LOCUS       DAJVUN010000001        69787 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.001, whole genome shotgun sequence.
ACCESSION   DAJVUN010000001 DAJVUN010000000
VERSION     DAJVUN010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 69787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 69787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..69787
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.001"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..260
                     /locus_tag="OQQ76_000001"
     CDS             <1..260
                     /locus_tag="OQQ76_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HCS1966635.1"
                     /translation="GLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSV
                     VMTPGWDNANGVTGWARNCNIQSDSALQQACEDVFRFDDAN"
     gene            270..1644
                     /gene="gspE"
                     /locus_tag="OQQ76_000002"
                     /pseudo
     CDS             270..1644
                     /gene="gspE"
                     /locus_tag="OQQ76_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414649.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
     gene            1634..2836
                     /gene="hofC"
                     /locus_tag="OQQ76_000003"
     CDS             1634..2836
                     /gene="hofC"
                     /locus_tag="OQQ76_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein transport protein HofC"
                     /protein_id="HCS1966636.1"
                     /translation="MASKQLWRWHGITGDGNAQDGMLWAESRALLLMALQQQMVTPLS
                     LKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAH
                     DLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK
                     SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSW
                     LLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA
                     GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGHPIWLALKNTGEFSPLCLQLVRTG
                     EASGSLDLMLDNLAHHHRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL
                     GDAMSGMG"
     gene            complement(2871..3914)
                     /gene="guaC"
                     /locus_tag="OQQ76_000004"
     CDS             complement(2871..3914)
                     /gene="guaC"
                     /locus_tag="OQQ76_000004"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HCS1966637.1"
                     /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSDQSW
                     SGVPIIAANMDTVGTFSMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVS
                     TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV
                     TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
                     DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK
                     RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFI
                     RVQEQENRIFNNL"
     gene            complement(4070..4114)
                     /locus_tag="OQQ76_000005"
     CDS             complement(4070..4114)
                     /locus_tag="OQQ76_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966638.1"
                     /translation="MIIKTLKMSARKRN"
     gene            4139..4759
                     /gene="coaE"
                     /locus_tag="OQQ76_000006"
     CDS             4139..4759
                     /gene="coaE"
                     /locus_tag="OQQ76_000006"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HCS1966639.1"
                     /translation="MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA
                     PALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ
                     ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA
                     TREARLAVADDVIDNNGAPDAIASDIARLHAHYLQLASQFVSQEKP"
     gene            4759..5502
                     /gene="zapD"
                     /locus_tag="OQQ76_000007"
     CDS             4759..5502
                     /gene="zapD"
                     /locus_tag="OQQ76_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HCS1966640.1"
                     /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF
                     RNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVL
                     ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS
                     LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH
                     KSRFAIRFMPLDSENGQVPERLDFELACC"
     gene            5512..5709
                     /gene="yacG"
                     /locus_tag="OQQ76_000008"
     CDS             5512..5709
                     /gene="yacG"
                     /locus_tag="OQQ76_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HCS1966641.1"
                     /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE
                     KRIPSSGDLSESDDWSEEPKQ"
     gene            complement(5816..6205)
                     /gene="mutT"
                     /locus_tag="OQQ76_000009"
     CDS             complement(5816..6205)
                     /gene="mutT"
                     /locus_tag="OQQ76_000009"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HCS1966642.1"
                     /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE
                     TPEQAVVRELQEEVGITPQHFSLFEKLAYEFPDRHITLWFWLVESWEGVPWGKEGQPG
                     EWMSLVGLNADDFPPANEPVIAKLKRL"
     gene            complement(6265..8970)
                     /gene="secA"
                     /locus_tag="OQQ76_000010"
     CDS             complement(6265..8970)
                     /gene="secA"
                     /locus_tag="OQQ76_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HCS1966643.1"
                     /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK
                     GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM
                     RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG
                     MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
                     ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE
                     RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
                     IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG
                     TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ
                     PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG
                     RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
                     KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED
                     VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERIL
                     AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
                     PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ
                     LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ"
     gene            complement(9032..9544)
                     /gene="secM"
                     /locus_tag="OQQ76_000011"
     CDS             complement(9032..9544)
                     /gene="secM"
                     /locus_tag="OQQ76_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414639.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secA regulator SecM"
                     /protein_id="HCS1966644.1"
                     /translation="MSGILTRWRQFGKRYFWPHLLLGMVAASFGLPALSNAAEPNVPA
                     KATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQYAIRTVIRHLSFAMAPQTL
                     PVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVWISQAQ
                     GIRAGPQRLT"
     gene            complement(9775..10692)
                     /gene="lpxC"
                     /locus_tag="OQQ76_000012"
     CDS             complement(9775..10692)
                     /gene="lpxC"
                     /locus_tag="OQQ76_000012"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HCS1966645.1"
                     /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
                     NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
                     IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
                     FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
                     DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVL
                     AKQEAWEYVTFQDDAELPLAFKAPSAVLA"
     gene            complement(10793..11944)
                     /gene="ftsZ"
                     /locus_tag="OQQ76_000013"
     CDS             complement(10793..11944)
                     /gene="ftsZ"
                     /locus_tag="OQQ76_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HCS1966646.1"
                     /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
                     DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA
                     GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
                     ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
                     EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
                     TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
                     VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFLRKQAD"
     gene            complement(12005..13267)
                     /gene="ftsA"
                     /locus_tag="OQQ76_000014"
     CDS             complement(12005..13267)
                     /gene="ftsA"
                     /locus_tag="OQQ76_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HCS1966647.1"
                     /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
                     GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
                     EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
                     ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI
                     AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
                     VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL
                     TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
                     GEAEVEKRVTASVGSWIKRLNSWLRKEF"
     gene            complement(13264..14094)
                     /gene="ftsQ"
                     /locus_tag="OQQ76_000015"
     CDS             complement(13264..14094)
                     /gene="ftsQ"
                     /locus_tag="OQQ76_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ"
                     /protein_id="HCS1966648.1"
                     /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV
                     VLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR
                     LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPML
                     YGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMK
                     RLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ
                     "
     gene            complement(14096..15016)
                     /gene="ddlB"
                     /locus_tag="OQQ76_000016"
     CDS             complement(14096..15016)
                     /gene="ddlB"
                     /locus_tag="OQQ76_000016"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1966649.1"
                     /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE
                     VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL
                     LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE
                     NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS
                     DETQYFCPAGLDASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG
                     MTSHSLVPMAARQAGMSFSQLVVRILELAD"
     gene            complement(15009..16484)
                     /gene="murC"
                     /locus_tag="OQQ76_000017"
     CDS             complement(15009..16484)
                     /gene="murC"
                     /locus_tag="OQQ76_000017"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HCS1966650.1"
                     /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
                     QISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
                     IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
                     VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL
                     HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
                     QDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEF
                     PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD
                     DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEML
                     APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD"
     gene            complement(16538..17605)
                     /gene="murG"
                     /locus_tag="OQQ76_000018"
     CDS             complement(16538..17605)
                     /gene="murG"
                     /locus_tag="OQQ76_000018"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HCS1966651.1"
                     /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR
                     MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLHIFNAWRQARAIMKAYKPDVVLGM
                     GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN
                     PVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS
                     GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA
                     LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR
                     AASIPDATERVANEVSRAARA"
     gene            complement(17602..18846)
                     /gene="ftsW"
                     /locus_tag="OQQ76_000019"
     CDS             complement(17602..18846)
                     /gene="ftsW"
                     /locus_tag="OQQ76_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HCS1966652.1"
                     /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY
                     DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL
                     PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYI
                     ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVVFVTTLAMLFLAGAK
                     LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL
                     WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL
                     EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
                     MLLRIDYETRLEKAQAFVRGSR"
     gene            complement(18846..20162)
                     /gene="murD"
                     /locus_tag="OQQ76_000020"
     CDS             complement(18846..20162)
                     /gene="murD"
                     /locus_tag="OQQ76_000020"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HCS1966653.1"
                     /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL
                     DKLPEAVERHTGSLNDEWLMAADLIVASPGIARAHPSLSAAADAGIEIVGDIELFCRE
                     AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAECELYVLELS
                     SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT
                     MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
                     LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL
                     QVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME
                     QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG"
     gene            complement(20165..21247)
                     /gene="mraY"
                     /locus_tag="OQQ76_000021"
     CDS             complement(20165..21247)
                     /gene="mraY"
                     /locus_tag="OQQ76_000021"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HCS1966654.1"
                     /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
                     IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
                     VVLVGYAVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL
                     VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA
                     TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
                     LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
                     EPRVIVRFWIISLMLVLIGLATLKVR"
     gene            complement(21241..22599)
                     /gene="murF"
                     /locus_tag="OQQ76_000022"
     CDS             complement(21241..22599)
                     /gene="murF"
                     /locus_tag="OQQ76_000022"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HCS1966655.1"
                     /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK
                     GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV
                     VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG
                     ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN
                     ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP
                     LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN
                     ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK
                     QSHAISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQENG
                     TC"
     gene            complement(22596..24083)
                     /gene="murE"
                     /locus_tag="OQQ76_000023"
     CDS             complement(22596..24083)
                     /gene="murE"
                     /locus_tag="OQQ76_000023"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HCS1966656.1"
                     /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH
                     QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY
                     HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
                     SAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
                     EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKV
                     IDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAA
                     RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
                     GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC
                     AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA"
     gene            complement(24070..25836)
                     /gene="ftsI"
                     /locus_tag="OQQ76_000024"
     CDS             complement(24070..25836)
                     /gene="ftsI"
                     /locus_tag="OQQ76_000024"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HCS1966657.1"
                     /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
                     LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
                     GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
                     LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
                     EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
                     NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
                     RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
                     LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
                     PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
                     NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
                     ALTTGDKNEFVINQGEGTGGRS"
     gene            complement(25852..26217)
                     /gene="ftsL"
                     /locus_tag="OQQ76_000025"
     CDS             complement(25852..26217)
                     /gene="ftsL"
                     /locus_tag="OQQ76_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HCS1966658.1"
                     /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI
                     CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
                     EKLQMQHVDPSQENIVVQK"
     gene            complement(26214..27155)
                     /gene="rsmH"
                     /locus_tag="OQQ76_000026"
     CDS             complement(26214..27155)
                     /gene="rsmH"
                     /locus_tag="OQQ76_000026"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HCS1966659.1"
                     /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
                     LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL
                     GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF
                     AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
                     IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL
                     GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA"
     gene            complement(27157..27615)
                     /gene="mraZ"
                     /locus_tag="OQQ76_000027"
     CDS             complement(27157..27615)
                     /gene="mraZ"
                     /locus_tag="OQQ76_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020325403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HCS1966660.1"
                     /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPC
                     LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
                     GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL"
     gene            complement(28217..29221)
                     /gene="cra"
                     /locus_tag="OQQ76_000028"
     CDS             complement(28217..29221)
                     /gene="cra"
                     /locus_tag="OQQ76_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite repressor/activator"
                     /protein_id="HCS1966661.1"
                     /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
                     HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
                     PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV
                     GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN
                     SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN
                     ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
                     "
     gene            complement(29303..29389)
                     /locus_tag="OQQ76_000029"
     CDS             complement(29303..29389)
                     /locus_tag="OQQ76_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fruR/shl operon leader peptide"
                     /protein_id="HCS1966662.1"
                     /translation="MCNLQPNMSRWAFFAKSVGTWNKSSCRS"
     gene            complement(29401..29892)
                     /gene="ilvN"
                     /locus_tag="OQQ76_000030"
     CDS             complement(29401..29892)
                     /gene="ilvN"
                     /locus_tag="OQQ76_000030"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1966663.1"
                     /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS
                     RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK
                     RNTEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDK
                     IMR"
     gene            complement(29895..31619)
                     /gene="ilvI"
                     /locus_tag="OQQ76_000031"
                     /pseudo
     CDS             complement(29895..31619)
                     /gene="ilvI"
                     /locus_tag="OQQ76_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079613.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
     gene            31738..31782
                     /locus_tag="OQQ76_000032"
     CDS             31738..31782
                     /locus_tag="OQQ76_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966664.1"
                     /translation="MKRNDKILHYEGLN"
     gene            complement(31937..32881)
                     /gene="leuO"
                     /locus_tag="OQQ76_000033"
     CDS             complement(31937..32881)
                     /gene="leuO"
                     /locus_tag="OQQ76_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LeuO"
                     /protein_id="HCS1966665.1"
                     /translation="MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAH
                     VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG
                     SGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ
                     ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDR
                     FASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVL
                     PLLLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR"
     gene            33542..33628
                     /gene="leuL"
                     /locus_tag="OQQ76_000034"
     CDS             33542..33628
                     /gene="leuL"
                     /locus_tag="OQQ76_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leu operon leader peptide"
                     /protein_id="HCS1966666.1"
                     /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH"
     gene            33721..35292
                     /gene="leuA"
                     /locus_tag="OQQ76_000035"
     CDS             33721..35292
                     /gene="leuA"
                     /locus_tag="OQQ76_000035"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HCS1966667.1"
                     /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME
                     VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT
                     SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN
                     AGATTINIPDTVGYTMPFEFARIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV
                     HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI
                     CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
                     AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR
                     LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITDYNVELVKYS
                     LTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
                     LQRKAQHNENNKETV"
     gene            35292..36383
                     /gene="leuB"
                     /locus_tag="OQQ76_000036"
     CDS             35292..36383
                     /gene="leuB"
                     /locus_tag="OQQ76_000036"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HCS1966668.1"
                     /translation="MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYD
                     VGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHF
                     KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
                     AFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD
                     VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG
                     FGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGI
                     RTGDLARGAAAVSTDEMGDIIARYVAEGV"
     gene            36386..37786
                     /gene="leuC"
                     /locus_tag="OQQ76_000037"
     CDS             36386..37786
                     /gene="leuC"
                     /locus_tag="OQQ76_000037"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HCS1966669.1"
                     /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL
                     RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH
                     PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
                     GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT
                     LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV
                     VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL
                     TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD
                     KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
                     AAAAVTGHFADIRNIK"
     gene            37797..38402
                     /gene="leuD"
                     /locus_tag="OQQ76_000038"
     CDS             37797..38402
                     /gene="leuD"
                     /locus_tag="OQQ76_000038"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HCS1966670.1"
                     /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
                     NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
                     APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY
                     RFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN"
     gene            complement(38451..39533)
                     /locus_tag="OQQ76_000039"
     CDS             complement(38451..39533)
                     /locus_tag="OQQ76_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1966671.1"
                     /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV
                     GAQPFWIGLFYTVNTIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNAPLFAFNRH
                     YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSIAAGIFTLSLVLIAFML
                     PSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPD
                     KLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALM
                     TLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW
                     GHFAVYWVIAVISVVALFLTAKVKDV"
     gene            complement(39635..39766)
                     /gene="sgrT"
                     /locus_tag="OQQ76_000040"
     CDS             complement(39635..39766)
                     /gene="sgrT"
                     /locus_tag="OQQ76_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake inhibitor SgrT"
                     /protein_id="HCS1966672.1"
                     /translation="MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES"
     gene            39855..41510
                     /gene="sgrR"
                     /locus_tag="OQQ76_000041"
     CDS             39855..41510
                     /gene="sgrR"
                     /locus_tag="OQQ76_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SgrR"
                     /protein_id="HCS1966673.1"
                     /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL
                     NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT
                     VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE
                     NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIA
                     DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRN
                     TTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEG
                     CYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART
                     IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIES
                     DIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA
                     SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
     regulatory      41544..41643
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            41674..42657
                     /gene="thiB"
                     /locus_tag="OQQ76_000042"
     CDS             41674..42657
                     /gene="thiB"
                     /locus_tag="OQQ76_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HCS1966674.1"
                     /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAF
                     EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA
                     ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT
                     STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
                     PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP
                     TGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISGWQRAVSR"
     gene            42633..44243
                     /gene="thiP"
                     /locus_tag="OQQ76_000043"
     CDS             42633..44243
                     /gene="thiP"
                     /locus_tag="OQQ76_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HCS1966675.1"
                     /translation="MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWV
                     AVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL
                     PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ
                     ALENIPDEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
                     GGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQ
                     GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS
                     LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFL
                     LLNNTIGLQQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL
                     KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA
                     VTALILLLLCFLLFTVIEKLPGRNVKTD"
     gene            44227..44925
                     /gene="thiQ"
                     /locus_tag="OQQ76_000044"
     CDS             44227..44925
                     /gene="thiQ"
                     /locus_tag="OQQ76_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706019.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein
                     ThiQ"
                     /protein_id="HCS1966676.1"
                     /translation="MLKLTDITWLYQHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL
                     IAGFLTPANGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL
                     NAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL
                     DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELL
                     SGKASASAILGITG"
     gene            complement(45039..45803)
                     /locus_tag="OQQ76_000045"
     CDS             complement(45039..45803)
                     /locus_tag="OQQ76_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1966677.1"
                     /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG
                     LGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE
                     HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI
                     LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL
                     WLTPLISAIGVVALVVLIRQPLMPVYIDILRKVVGV"
     gene            complement(45889..46767)
                     /gene="araC"
                     /locus_tag="OQQ76_000046"
     CDS             complement(45889..46767)
                     /gene="araC"
                     /locus_tag="OQQ76_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HCS1966678.1"
                     /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
                     YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRA
                     YWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLL
                     LRRMEAINESLHPPMDNRVREACQYISDHLADSDFDIASVAQHVCLSPSRLSHLFRQQ
                     LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF
                     RAGCEEKVNDVAVKLS"
     gene            47106..48806
                     /gene="araB"
                     /locus_tag="OQQ76_000047"
     CDS             47106..48806
                     /gene="araB"
                     /locus_tag="OQQ76_000047"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HCS1966679.1"
                     /translation="MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCD
                     APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL
                     ALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI
                     LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP
                     PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH
                     MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG
                     QSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLP
                     VVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI
                     AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP
                     SAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
                     "
     gene            48817..50319
                     /gene="araA"
                     /locus_tag="OQQ76_000048"
     CDS             48817..50319
                     /gene="araA"
                     /locus_tag="OQQ76_000048"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HCS1966680.1"
                     /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKL
                     PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ
                     FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERI
                     GSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
                     NSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFT
                     TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
                     YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAI
                     VASLIDLGDRYRLLVNCIDTVKTPHSLLKLPVANALWKAQPDLPTASEAWILAGGAHH
                     TVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR"
     gene            50519..51214
                     /gene="araD"
                     /locus_tag="OQQ76_000049"
     CDS             50519..51214
                     /gene="araD"
                     /locus_tag="OQQ76_000049"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HCS1966681.1"
                     /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS
                     GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT
                     IWAQSGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA
                     AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMEIFCRQLAPQLPDMQQTLLDKH
                     YLRKHGAKAYYGQ"
     gene            51289..53640
                     /gene="polB"
                     /locus_tag="OQQ76_000050"
     CDS             51289..53640
                     /gene="polB"
                     /locus_tag="OQQ76_000050"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HCS1966682.1"
                     /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF
                     IPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT
                     VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT
                     RHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPD
                     VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID
                     GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK
                     DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG
                     EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
                     TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC
                     RFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIG
                     RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLIPTIRGADTGSKKRYAGLIQEG
                     DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARL
                     VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL
                     DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF"
     gene            53804..56710
                     /gene="rapA"
                     /locus_tag="OQQ76_000051"
     CDS             53804..56710
                     /gene="rapA"
                     /locus_tag="OQQ76_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001117023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HCS1966683.1"
                     /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA
                     RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL
                     DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN
                     IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
                     MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL
                     LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPN
                     RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD
                     SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
                     SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV
                     ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
                     SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
                     YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE
                     QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLLDIIGINQDDRGDNMIVL
                     TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS
                     STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
                     EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL
                     SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ"
     gene            56722..57381
                     /gene="rluA"
                     /locus_tag="OQQ76_000052"
     CDS             56722..57381
                     /gene="rluA"
                     /locus_tag="OQQ76_000052"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HCS1966684.1"
                     /translation="MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD
                     SVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
                     HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGR
                     SHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD
                     F"
     gene            complement(57498..58313)
                     /gene="djlA"
                     /locus_tag="OQQ76_000053"
     CDS             complement(57498..58313)
                     /gene="djlA"
                     /locus_tag="OQQ76_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HCS1966685.1"
                     /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF
                     ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDLMNLHGASRTAAQNAFR
                     VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERSVLYVIAEE
                     LGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDA
                     TTIKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK"
     gene            58568..60922
                     /gene="lptD"
                     /locus_tag="OQQ76_000054"
     CDS             58568..60922
                     /gene="lptD"
                     /locus_tag="OQQ76_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HCS1966686.1"
                     /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
                     GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVPLHQKEAPGQPEPVR
                     TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
                     RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
                     PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
                     RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKV
                     SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
                     QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
                     AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL
                     EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI
                     YDDAAVEHFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG
                     GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI
                     SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD
                     NDKQHAVYDNAIGFNIELRGLSSNYGLDTQEMLRSNILPYQNTL"
     gene            60975..62261
                     /gene="surA"
                     /locus_tag="OQQ76_000055"
     CDS             60975..62261
                     /gene="surA"
                     /locus_tag="OQQ76_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SurA"
                     /protein_id="HCS1966687.1"
                     /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
                     LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
                     IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL
                     AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQVRNGADFGKLAIA
                     HSADQQALNGGQMGWGRIQELPGIFAQTLSTAKKGDIVGPIRSGVGFHILKVNDLRGE
                     SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPDS
                     ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA
                     QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
     gene            62261..63250
                     /gene="pdxA"
                     /locus_tag="OQQ76_000056"
     CDS             62261..63250
                     /gene="pdxA"
                     /locus_tag="OQQ76_000056"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HCS1966688.1"
                     /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT
                     DRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAIENGHYVVETLA
                     RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
                     ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
                     GTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
                     GFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ"
     gene            63247..64068
                     /gene="rsmA"
                     /locus_tag="OQQ76_000057"
     CDS             63247..64068
                     /gene="rsmA"
                     /locus_tag="OQQ76_000057"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HCS1966689.1"
                     /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI
                     GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE
                     KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
                     SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAF
                     NQRRKTIRNSLGNLFSVEVLTGMGLDPAMRAENISVAQYCQMANYLAENAPLQES"
     gene            64071..64448
                     /gene="apaG"
                     /locus_tag="OQQ76_000058"
     CDS             64071..64448
                     /gene="apaG"
                     /locus_tag="OQQ76_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HCS1966690.1"
                     /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ
                     LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI
                     DENGVPFSIDIPVFRLAVPTLIH"
     gene            64455..65297
                     /gene="apaH"
                     /locus_tag="OQQ76_000059"
     CDS             64455..65297
                     /gene="apaH"
                     /locus_tag="OQQ76_000059"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HCS1966691.1"
                     /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG
                     SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
                     RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
                     NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA
                     EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGE
                     AAAS"
     gene            complement(65375..65854)
                     /gene="folA"
                     /locus_tag="OQQ76_000060"
     CDS             complement(65375..65854)
                     /gene="folA"
                     /locus_tag="OQQ76_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HCS1966692.1"
                     /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR
                     HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ
                     FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
     gene            complement(66046..67908)
                     /gene="kefC"
                     /locus_tag="OQQ76_000061"
                     /pseudo
     CDS             complement(66046..67908)
                     /gene="kefC"
                     /locus_tag="OQQ76_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414589.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
     gene            complement(67901..68431)
                     /gene="kefF"
                     /locus_tag="OQQ76_000062"
     CDS             complement(67901..68431)
                     /gene="kefF"
                     /locus_tag="OQQ76_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     oxidoreductase KefF"
                     /protein_id="HCS1966693.1"
                     /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI
                     DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGKALHGKHLLW
                     AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA
                     RHYKQRLLEWQEAHHG"
     gene            complement(68539..69787)
                     /locus_tag="OQQ76_000063"
                     /pseudo
     CDS             complement(68539..69787)
                     /locus_tag="OQQ76_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414587.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT        16885 a        19335 c        17696 g        15871 t
ORIGIN      
        1 gtggattaga tacctgcgac ggtggcagca atggcattcc ctcgcctacc accacccgct
       61 atgtttcagc catgagtgtg gcaaaaggcg tggtgtcgct gaccgggcaa gaaagtctca
      121 atggactaag cgtcgtcatg acgccaggtt gggataacgc aaacggcgtc accggctggg
      181 cgcgcaactg caatattcaa agtgacagcg cattgcagca agcctgcgaa gatgtcttcc
      241 gctttgatga cgccaactaa ggagcggcaa tgaatattcc acagctcacc gccctgtgtc
      301 tgcgttatca gggagtcttg ctggatgcca gcgaagaggt ggttcatgtt gcggtagtcg
      361 atgcaccttc gcatgagttg ctggacgcat tgcatttcgc taccaccaaa cgtattgaga
      421 tcacctgctg gacgcgccaa caaatggaag gccacgccag tcgcacacaa cagacattgc
      481 ccgtagctgt tcaggagaag catcagtcga aagcagagtt gctgactcga acgttacaat
      541 ctgcgctgga acaacgtgcg tctgatattc atatcgaacc agcggacaat gcctaccgca
      601 tccgcttgcg tatcgacggc gtattgcatc ctttaccgga tgtttcaccg gatgccggag
      661 tcgcattaac cgccagatta aaagtgctgg gaaacctgga tattgcggaa catcgcctgc
      721 cgcaggacgg gcaattcact gtcgaactgg caggaaacgc cgtctcattt cgtattgcga
      781 ccttaccatg tcggggtggt gaaaaggtag tattaaggtt gttacagcag gtgaaccagg
      841 cactggatgt taacacgctg ggaatgcagc cgttacaact ggcggacttt gctcatgcct
      901 tgcaacaacc acagggactg gtgctggtaa ctggccctac aggcagcggc aaaacggtca
      961 cgctttatag tgccctgcaa aagctgaata ccgctgacat taatatttgt agcgtcgaag
     1021 atccggttga gatccccata gccggactaa accagacgca aatccatccg cgtgccgggc
     1081 tcacctttca gggcgttttg cgtgcgttat tgcgccagga tcctgacgtc atcatgatcc
     1141 gatggcgaaa cggcagaaat tgccattaaa gccgcgcaaa ccggtcacct ggtgttgtct
     1201 accctacaca ctaattccac ctgcgaaacg ctggtacgtt tacagcaaat gggagtcgcc
     1261 cgctggatgc tctcatcagc gcttacgctg gtaatagccc agcgtctggt acgtaaattt
     1321 tgcccacatt gtcgccagca gcaaggggag cccatccata ttccagacaa tgtatggccg
     1381 tcgccgctgc cccactggca ggcacccggt tgtgtacatt gctaccacgg tttttatggt
     1441 cgtaccgcct tgtttgaagt cctgcccatt acaccagcca tacgccagct tatttccgct
     1501 aataccgacg ttgaatcgct ggaaacgcac gcacgacagg cgggtatgcg tacgcttttt
     1561 gaaaacggct gcctagccgt ggagcaaggc ttaaccacct ttgaagagtt aatccgcgta
     1621 ctggggatgc cgcatggcga gtaagcaact ctggcgctgg catggcataa ccggcgacgg
     1681 caatgcgcaa gatgggatgc tatgggcaga gagccgtgct ttgctgctca tggcactaca
     1741 gcaacagatg gttaccccac ttagcctgaa gcgaatcgcc atcaattctg cgcagtggcg
     1801 aggagataaa agcgcggaag tcattcatca actggcgacg ctactcaaag ccgggttaac
     1861 gctttctgaa gggctggcac tgctggcgga acagcatccc agtaagcaat ggcaagcgtt
     1921 gctgcaatcg ctggcgcacg atctcgaaca gggcattgct ttttccaatg ccttattacc
     1981 ctggtcagag gtatttccgc cactctatca ggcgatgatc cgcacgggtg aactgaccgg
     2041 taagctggat gaatgctgct ttgaactggc gcgtcagcaa aaagcccagc gtcagttgac
     2101 cgacaaagtg aaatcagcgt tacgttatcc catcatcatt ttagcgatgg caatcatggt
     2161 ggttgtggca atgctgcatt ttgttctgcc ggagtttgcc gctatctata agaccttcaa
     2221 caccccacta ccggcactaa cgcaggggat catgacgctg gcagacttta gtggcgaatg
     2281 gagctggctg ctggtgttgt tcggctttct gctggcgata gccaataagt tgctgatgcg
     2341 ccgaccgacc tggcttatag tgcggcagaa attgctgtta cgcatcccga ttatgggttc
     2401 actgatgcgg ggacaaaaac tcacgcagat ctttacgatt ctggcgctga cacaaagtgc
     2461 aggcattact tttttgcagg gcgtagagag cgtcagagaa acaatgcgct gcccgtactg
     2521 ggtgcaactt ctgacacaaa tccagcacga tatcagtaac ggtcatccca tctggctggc
     2581 gctaaaaaat accggggagt ttagcccgct ctgtttgcaa ttagtgagaa caggagaggc
     2641 atccggctcg ctggacctca tgttagacaa cctcgcccat catcatcggg ataacacaat
     2701 ggcgctggcg gataacctcg cagccttact ggaaccggcg ttgctgatca taacgggagg
     2761 aattatcggt acgctggtgg tggcgatgta tctgccaatt ttccatttag gcgatgcgat
     2821 gagtgggatg ggataacgct ggcgtgttgc tccacaccag cgttggaaga ttacaggttg
     2881 ttgaagatgc ggttttcttg ttcctgcaca cggataaatg tggtgcgctt ggtcagttct
     2941 ttcaggcgtg aagccccaac gtatgtacaa gctgaacgca ggccgcccaa aatatcacgc
     3001 gcggtatttt caaccgggcc tcgcagcggc agcttaacgg ttttaccttc tgctgcgcga
     3061 tattccgcaa cgccgccaac gtgacgtttc atcgcagact cggagctcat gccgtagaac
     3121 agcataaatt tctcgccgtt ctcctcaacg atgcgaccgc cgctctcttc gtggcccgcc
     3181 agcatgccgc caagcatgac gaaatcggca ccgccgccaa aggcttttgc gacatcgccc
     3241 ggcgtggtgc agccaccgtc gctgacgatc attccgccca gaccgtgcgc cgcatcggca
     3301 cattcgatta ccgcagaaag ctgcggataa ccgacgcctg ttttgacgcg agttgtacaa
     3361 acagaacctg ggccaatgcc aactttaacg atatcagcac cggagaggat aagctcctca
     3421 cacatttcac cagtcactac gttgccagca caaatggttt tggtcggcca cgcttcacgc
     3481 gctttcgcaa cgaactgcac gaagtgttcg gaataaccat tcgccacatc aatacaaaca
     3541 aagtttaatg ccgggttcag gtcgagaatc tgtttagttt tttcgaaatc cgcatcagac
     3601 gtaccggtag aaaccatcac atgtttcagc acatcagcgg aagaattgtt gataaacgct
     3661 tgccactctt cgacagaata gtgtttatgc acagcagtca aaatatcaaa agaagccagc
     3721 gcagaggcca tagaaaatgt acctacggtg tccatatttg cggcgataat cggcacgccg
     3781 gaccagctct gatctgaatg tttgaaggtg aattgacgtt ccagttcaac atcggaacgg
     3841 cttttaagag tggagcgttt agggcggatg agaacgtctt taaaacctaa cttcagatct
     3901 tcttcaatac gcatgtgcgg attcctgggg ttaatggcta taagggtaag agcgcaactc
     3961 cagtgacgct atcatacgca ctaatcaatg cggcgcaaga ctgcgaaatt gtcttttttt
     4021 acgctacaat cccataaatt tacctggtaa atagtgagcg aacgtttcat caatttcgct
     4081 ttcgtgcact catttttaac gttttgataa tcatgatgaa ttcccgggaa tataaattat
     4141 gaggtatata gttgccttaa cgggaggcat tggcagtggc aagagtaccg ttgccaatgc
     4201 gtttgctgat ctcggaatta acgtcattga tgccgatatt attgcgcgtc aggtggttga
     4261 accaggtgca cctgcgctac atgccattgc tgatcacttt ggcgctaaca tgattgctgc
     4321 tgatggaaca ttgcagcgcc gggccttgcg cgagcggatc ttcgccaacc cggaagagaa
     4381 aaactggctt aacgccctgc tgcatccgct gattcagcaa gagacgcaac accagatcca
     4441 gcaagctact tccccctatg tactgtgggt tgtgccattg ctggtagaaa actcactgta
     4501 taaaaaagcg aatcgagtgc tggtggtgga tgtcagccca gaaacgcaac ttaagcgcac
     4561 catgcagcgc gatgatgtaa ctcgcgagca tgtcgaacaa atccttgctg ctcaggcaac
     4621 gcgcgaagcc cgccttgccg tggcagatga cgtcattgat aataacggcg caccggatgc
     4681 tatcgcatcg gatattgccc gcctgcacgc acactatttg cagcttgcgt cgcagtttgt
     4741 ctcacaggaa aaaccgtaat gcagacccag gtcctttttg aacatccact aaatgaaaaa
     4801 atgcgtacat ggctgcgcat tgagtttttg attcagcaac tcaccgttaa tttacccatc
     4861 gttgaccacg ctggcgcact gcatttcttc cgtaatgtca gtgaattact ggatgttttc
     4921 gagcgcggcg aagtccgcac tgagctgttg aaagaacttg accggcagca acgtaaactc
     4981 cagacctgga ttggcgtgcc tggcgtggac cagagccgta ttgaagcatt aattcagcag
     5041 ttaaaagcgg cggggagcgt attaatttcc gcgccgcgta tcgggcaatt tctgcgtgaa
     5101 gatcgtttga ttgctctggt gcgtcagcga ctgagcatcc caggcggctg ttgcagcttt
     5161 gatttaccta cattgcacat ttggctgcat ctaccccagg cgcagcgcga cagccaggta
     5221 gaaacctgga ttgccagcct gaacccgctc acccaggcac ttaccatggt gctggattta
     5281 attcgccagt cggccccctt ccgtaaacaa accagcctga atggttttta tcaggataac
     5341 ggtggcgatg ccgacttgct gcgcctgaat ctgtcgctcg attcacagct ttatccgcaa
     5401 atttccggac ataagagccg ttttgccatt cgttttatgc cgctggacag tgaaaacgga
     5461 caggtaccgg aacgtctaga tttcgaactg gcctgttgct aaggagtgaa aatgtcagaa
     5521 actattacgg tgaattgccc aacctgcggg aaaacggtgg tgtggggtga aatcagcccg
     5581 tttcggccat tttgctccaa acgttgtcag ctgatcgacc tcggagaatg ggctgctgaa
     5641 gaaaaacgaa tccccagcag tggcgatctt tccgaaagcg atgactggag cgaagagcca
     5701 aagcagtgac attggtctga tgccgcacat aggcctgata agacgcggac agcgtcgcat
     5761 caggcatctt gtgcaaatgt cggatgcagc gtgaacgcct tatccgacct acagactaca
     5821 gacgcttaag cttcgcaatt accggttcat tggctggcgg aaaatcatcg gcattaagac
     5881 cgaccagcga catccactca ccgggttgcc cttctttacc ccacggcacc ccttcccaac
     5941 tttcgaccag ccagaaccac agagttatat gcctgtccgg gaattcatat gccagttttt
     6001 caaatagcga aaaatgttgt ggggtaatcc cgacctcttc ctgaagttca cgcaccaccg
     6061 cctgttccgg cgtttcgccc atttcaattt taccgccggg aaactccagt ttattcgcca
     6121 tgtgcgcatc tgctgcgcga cgcgttataa agatttcatt gttctcgttg cgaataatac
     6181 ctaccgcaat ttgcagcttt ttcattgttt taaacctata aaaaaggcgc agaatcctgc
     6241 gccttttgct tcaacagtta gcttttattg caggcggcca tgacactgct tgtatttttt
     6301 accagaaccg cacgggcaag gatcgttacg tcctactttg cgctcaccgg tttgcgccgc
     6361 caatgcagct gcggctgcag agtcgtcatc ctgatggcta agctgctgca tttgcgctaa
     6421 acgctcggct tccatacgac gctgttgttc cagctcctca acctcttcag gcatacgtac
     6481 ctgaactttg ctcagcgtac tgataacttc atatttcaac gactccagca tcgctgcaaa
     6541 catggagaac gattcacgtt tgtattcctg cttcggatct ttctgtgcat agccacgcag
     6601 gtggataccc tgacgcagat agtccatcgc tgccaggtgc tctttccaca gggagtcaag
     6661 cgtttgcagc atgacgcctt tctcgaagtg acgcatcatc tcagcaccaa ccacttcttc
     6721 tttacgctga tacacttcga tggactgcgc cagaatgcgc tcacgcagcg tctcttcatg
     6781 cagttctggt tctttatcca gccactcggc aattggtaaa tcgaggtcga aatcgttctt
     6841 cagacgttcc tgcagccccg gaatatccca catttcttcc agcgactgtg gcggaatgta
     6901 ggcatcaatg gtggctttga acacatcttc acgaatgctg ttgatggttt cgctcacatc
     6961 gctgacatcc agcagttcat tacgctggga gtaaatggcg cgacgctgat cgttagccac
     7021 gtcatcatat tccagcagtt gcttacgaat gtcgaagtta cgactttcaa ctttacgctg
     7081 ggcgttggca atcgctttag tcacccacgg gtgttcaatg gcttcgcctg gcttcatacc
     7141 cagtttacgc atcatgccgg atactcggtc ggaagcaaaa atacgcatca gcgcatcttc
     7201 catcgacagg tagaaacggg aagaaccagc atccccctga cgaccagaac gaccgcgcaa
     7261 ctggttatcg atacgacggg attcgtgacg ctcggtaccg atgatatgca ggccacctgc
     7321 ttccagcacc gcatcgtgac gtacctgcca gtcggcttta attttttcaa tttgctctgc
     7381 ggtcggattt tccagcgcgg caacttctgc ctgccagcta ccaccgagca caatatctgt
     7441 accacgaccc gccatattgg tcgcgatagt caccgcagcc ggataacctg cctgagcaac
     7501 aatcgccgct tcgttggcgt ggaatttggc gttcaggacg ttgtgcttaa taccagcttt
     7561 ggtcagttcg tttgacacca gctccgattt ttcgatggag atagtaccca ccagcaccgg
     7621 ctggcctttc gcagtacgtt ctttgatatc ttcaatgatc gcctgaattt tttccgcttc
     7681 agtcatgtag accaggtccg gcagatcttt acgaatcatt ggacggttgg tcggaacaac
     7741 gacggtatcc agcttgtaga tggagctaaa ttcgaaagct tcggtatcag cagtaccggt
     7801 catccccgcc agtttttcat acagacggaa gtagttctgg aaggtgatcg aagccagcgt
     7861 ttggttttcg ttctggatct gcacaccttc tttcgcttcc acagcctggt gcagaccatc
     7921 ggaccagcga cggccctgca tggtacgacc ggtgtgttcg tcaacgatga taacttcacc
     7981 atctttaacg atgtagtcga cgtcgcgggt aaacagcgca tgagcgcgca gcgccgccgt
     8041 tacgtggtgc atcagcatga tgttggccgg agagtacaga gactcccctt catccatgat
     8101 gccctctttc accagcagtt cttcaatcag caccagacca cgttcggtca ggttcacctg
     8161 gcgagatttt tcgtccaccg agaagtggcc ttcgccctgg aaggtttcgg agtcttcttt
     8221 ttcctgacgg atcaggtgcg gaataatttt attcacgcgt ttatacattt ccgagctgtc
     8281 ttctgccggg ccggaaatga tcagcggtgt acgcgcttca tcgatcagga tggagtccac
     8341 ttcgtccacc agcgcatagt gcagtttacg ctgtacacgt tcttcagggc tgaacgccat
     8401 attgtcgcgc aggtagtcaa agccgtattc gttgttcgta ccgtaagtga tgtcagctgc
     8461 gtaagcttcg cgctttgccg gtgctggcat gcccggcagg ttgataccga cagtcaggcc
     8521 aaggaattca aacagcggac ggttgttttc ggcgtcacgt tgcgccaggt agtcgttgac
     8581 ggtaactacg tgcacgcctt taccggttag tgcgttcagg taagcaggca gcgttgcggt
     8641 cagggtttta ccttcaccgg tacgcatttc ggcgatgcag cgttcgttaa gaaccatacc
     8701 gccgagtaac tgaacgtcga agtgacgcat accaaagacg cgcttacttg cctcacgtac
     8761 cacggcgaaa gcttccggga tcagattttc cagcacttcg cctttttcca gacgtgcacg
     8821 aaactctgcg gttttccctt tcagttcttc gtcggagagt ttttccatct ccggttccat
     8881 ggcattgatg atgttgacca ctttgcgcat ccggcgcagg gtgcgatcgt tacgactacc
     8941 gaaaacttta gttaacaatt tgattagcat aataaaatct caaacgcccc gcgttgcgga
     9001 gttaataaaa tgaagtaaag gtttattgtt gttaggtgag gcgttgaggg ccagcacgga
     9061 tgccttgcgc ctggcttatc cagacgggcg tgctgaattt tgcttgtggg gtaaaatgcg
     9121 cataatcaat gcgataaccc ttttcagacg gcgtgccttc ctgggtcagc agcgcgctga
     9181 gcgtatccag taatgcaaga tgttgcgcct gaagaggcaa agattcttca gcaacgggca
     9241 gtgtttgcgg tgccattgcg aaagaaagat gacggattac cgtgcgaatg gcatattgat
     9301 gccagtaatc aacggaatag ttcgaattcg ggcggcgtgt gttcgcttcc agcaaggcca
     9361 attgaccaaa gttaactttg gctgaaggct cgtggttgcg ggttgtcgct tttgcgggca
     9421 cgtttggttc ggcggcgttg ctgagcgcag gcaaaccgaa actcgccgcg accatcccta
     9481 ataagagatg cggccagaag tagcgtttac caaactgtcg ccagcgcgtc agtattccac
     9541 tcacgttatt gccatcccga tcgaattcaa acgtatttag cgcacaaatc ttatcattaa
     9601 agcctgaagt ccacagcatg aatgaagata agttgtgcgt aaaagtgctt aagaaaacag
     9661 cgttcgcacc gttttttata gctcttataa aattcaaaaa aaaacgactg gttcacctgg
     9721 ccggagagag tgccagattt gccagtcgaa ttttatacga cagtataaat gtcgttatgc
     9781 cagtacagct gaaggcgctt tgaaggccaa cggcagttct gcgtcgtcct ggaaggtcac
     9841 atattcccag gcttcctgtt tcgccaggac agcctgcagc agtttgttat tcagtgcatg
     9901 accggattta taagcgataa atgcaccaat aatattgtga ccacacatga acaagtcacc
     9961 gatcgcatcg agcattttgt gacgcacaaa ttcgtcttca aaacgcaggc cgtcttcgtt
    10021 cagtacgcga taatcgtcaa caacgatggc acaatcgaag ctgccgccca ggcacaaacc
    10081 acgggactgc agatattcga tatcacgcat gaaaccgaac gtacgcgcac ggctgatctg
    10141 gcgcataaac gcatcagcgg agaagttcat cgcatagcgc tggttgctgg aatcaatagc
    10201 cggatggtta aaatcgatgg tgaaatccag cgaaaaacca ttgtacggct taaattcagc
    10261 ccacttatcg ccatcttcga cacgaacagt ctctttgatg cgaacaaatt ttttggcgca
    10321 gttcaactcg tcgataccgg cgtcaagcag caggtataca aacggagcgg cgctgccgtc
    10381 catgatcggg atttccggcg cgttaacttc gataacaatg ttatcgatgc ccaggcccgc
    10441 gagagcagca ttgaggtgct ctacggttga aatccgtaca tcatgctcgt tgaccagaca
    10501 cgtacagagc atggtatcac gcacagattt ggcatcggcc gggaaatcta ccggtggatt
    10561 caagtcggtg cgacgataga tgaccccggt gttggccggc gcagggcgta acgtcagagt
    10621 gactttcttg ccggtatgta aaccgacacc cgtcgcctga acgatacgtt taagtgtcct
    10681 ttgtttgatc atcgtattat ctcgccaaat tacctatcca accgaagtgt actatacatt
    10741 cggcgggcca gtttagcaca aagagcctcg aaaccaaaat tccagtcaat tcttaatcag
    10801 cttgcttacg caggaatgct gggatatcca gataatccgg ctctttcgca gtttgcggcg
    10861 cattgtcatt cacgacttta gcaaccggct tctgctcctg ggtcagcgga gccatcccat
    10921 gctgctggta gcgatccatc actggctgct gaacctgctt attggtcacc agagtgattt
    10981 caggacgttt gtccatgccg atacctgtcg caacaacggt tacgcgcagc tcgtcattca
    11041 tatccgggtc aagagaagta ccgataacca cagtcgcgtt gtcggaagca aatgcacgga
    11101 tggtgttacc taccgtttcg aactcatcca gacgcaggtc gaagcccgcc gtgatgttaa
    11161 ccagcacgcc gcgcgcgcca gacaggtcga tatcttccag cagcggagaa gagatagcca
    11221 tttcagcagc ttcttccgca cggtcttcac cgctcgccac gccagaaccc atcattgcgt
    11281 agcccatctc agacattacg gtgcgtacgt ctgcaaagtc cacgttcatc aaacccggac
    11341 gagtaatcag ttcagcgata ccttgcacag cgcctttcag tacatcgttc gctgcgccaa
    11401 acgcatccag cagggagata ccgcggccca gaactttcag cagtttgtcg ttcgggatag
    11461 tgatcagaga gtccacatgc ttggacagtt cagtgatccc ctgctccgcg aatgccatac
    11521 gcttcttgcc ttcaaagttg aaaggcttag tgacgacagc aacggtcagg atacccaaat
    11581 cttttgccac ttcagcgacg actggtgctg cacctgtacc ggtaccacca cccatacccg
    11641 cagcaataaa gaccatgtct gcaccttcca gcgccgcacg caatgcatcg cgatcctcat
    11701 cagccgcatt gcggccaact tctggattag cgccagcgcc cagtcctttg gtgataccgc
    11761 taccgatttg aatcgtctgt ccaaccgctg ttttacgcag cgcttgtgca tcggtattta
    11821 ccgcgaagaa ttcaacacct tcaatgcgct cgcgcaccat gtgttcaaca gcattaccgc
    11881 cgccgccgcc gacgccgatg actttaatca ccgcgtcatt ggtaagttcc attggttcaa
    11941 acatagtttc tctccgattt gtgcctgtcg cctgaggccg taatcatcgt cggcctcata
    12001 aaaattaaaa ctcttttcgc agccaactat tgagtcgctt gatccacgag ccaactgatg
    12061 ctgtaacacg tttttctact tcagcttcac cgttaagatg tgactctttc ccatagtgaa
    12121 gcaatcccac cgccgtcgaa taatacggct cctgagcata atccgttaaa ccggtaatgt
    12181 tcagcggcgc gccgatacgc acttgcgtat gaaacacgcg ctgagcacag gctgcaagac
    12241 cttcgatctg cgctgcgcca ccggttaata caatgcctgc cgccaggtga tgtttaaccc
    12301 cttgttggcg aagcttttcc tgcaactgca atatctcttc gttgaccagg ttgagcagct
    12361 cggtatagcg cggctcgatc acctctgcca gggtctgacg ttgcagactc cgtggcggac
    12421 gaccgcctac gctcggcact tccacgctct catcttttcc aacgatggaa cccagcgcac
    12481 aaccgtggcg aactttaatc gcttcggcgt cgcttggcgg cgtgccaaag gcgtaagcga
    12541 tatcactggt cacgacattg ccagcataag gaattacctt agtgtggcgc aatgccccac
    12601 cggtataaac ggcgatatcc attgtaccac ctccgatatc gacgacgcag acacccagtt
    12661 cacgttcatc ttccgtcaat accgaataac ttgatgccag tccggcaaat atcagttggt
    12721 caactttcag cccacaacgt tcaaccgctt tgacgatgtt tttcgccata tcgttgtgac
    12781 atgtgatcag gtgcactttt gcctgcatcc gcacgcccga aagtcctacc ggattcttga
    12841 tcccttcctg atagtcaatc gcatactctt gcgggatcac atgcagcaca cgatgttcat
    12901 cgcgcacacg caccgatttc gcggtatgga cgacgttttc cacatcttct tgcgtcactt
    12961 cttcttcaga aataggcacc ataccaattt cattctggca gctgatgtgc ttaccagaaa
    13021 gcgccagata taccgaagag atctgacaat ctgccatcaa ttctgcctgg tcaatggcgc
    13081 gttgtacgca cttgaccacg gattcgaggt cgttcacccc gcctttatcc ataccacgtg
    13141 acgggcagct gcccacgcca atgatattga ccataccgtc gggcagaact tcccctacta
    13201 aagcggcaac cttcgcggta ccaatctcta gtcctactac cagttttctg tccgtcgcct
    13261 tgatcattgt tgttctgcct gtgcctgatt ttgttgctga gtagattcct ctggcggcaa
    13321 gggcgcccag cctactgccg ctccagagtc ataacgcaaa tcaacgtagc taatccgttt
    13381 gccatcggtt tgcgcctgct gctgtaaaac cggataaagt tctacaaagc gagccaaacg
    13441 tttcatcgta tcgccccggc caagattgag cttaatatcg ttattcagcg tcaactgcca
    13501 ggaacgccgc gcggtcatcg ccgcttcctt cagagtaaat ctgtcctttg ccagcatctg
    13561 ccccatttcg cgatagccct gcaacacttc attggcgctg ccttccgggc catacagcat
    13621 tggaagcacc tgcttgctgg tgcgatctgg cggcacgctg aaggtgtttc cttccgcgtc
    13681 taccatatgt tgatcattcc accgcgcaat cggcacatat tcaaccagat gaatcttcaa
    13741 ttcatcaggc cactgctttc tgacgctcac ctgcttaatc cacggcaggc gttgttctat
    13801 ttgcgtctgg atgatgttga catcctgggt cataaaggta cccggctcac ccaatgccag
    13861 gatcgactgc cggatatcgt cattacgcgt gtaatggcgt tcaccggtca acaccagctt
    13921 tgagagcggc aggcgttgcg catcttccat ccagcccaac acgacccagc cgctcaccaa
    13981 cactgtcgtt aaaacggtca gcaggaaaag gatccccgcc agacgcgttc cattattgcg
    14041 gcgagaagaa acctcttctt cgctgtttcg cgtgttcaga gcagcctgcg acatattagt
    14101 ccgccagttc cagaattcgt actaccaact gcgagaagct catacctgcc tgacgtgccg
    14161 ccatcggcac caggctgtgg ctggtcatac ccggtgaggt attggcttcc agcagataaa
    14221 actgtccatc gctgtccagc ataacgtcaa tacgtcccca tcctttgcaa cctaacgtcg
    14281 tccatgcttt cagcactaat gcctgcaaat tggcctcttg tgacgcatcc agacctgcgg
    14341 ggcagaaata ctgtgtctca tcagagagat acttcgcctc ataatcatag aaggttccgg
    14401 acggttgaat acgtattgac ggtaaaattt cttcaccgag tatcgcaacc gtgaactccg
    14461 gcccacttag ccatttttca atcaatactt cttcatcgtg ctgaaatgcc aatcttaatg
    14521 catcttgtag agcattttct gctactactt ttgacattcc cacactggaa ccttcgcggc
    14581 tcggcttaac gataaccggc aaacccagag cagaaatttc tgctaactgc ttatcgctca
    14641 ggcctttttc aaactctgcg cgggttaacg ctacccacgg cgcgaccggt aaaccggcac
    14701 cttgccacag cagtttgctg cgtagtttat ccattgaaag cgcagatgcc atcactccgc
    14761 tgccggtata aggcaagccc atcagctcga gcatgccctg cagcgtacca tcttcaccgc
    14821 cgcgaccgtg tagcgcgata aacactttct gaaaacccat cgacttcagt tgcgtcacgt
    14881 cgacttcttt cgggtcgaca ggatacgcat caataccacc ttcacgcagc ccggctaaca
    14941 ccgctgcgcc agaattcaga gaaacttccc gctcagcgga agtcccgccc aacaggaccg
    15001 cgattttatc agtcatgttg ttcttcctcc ggagtttgcg gcttcagttt gatttcagct
    15061 aaagaacggg caatttttcc gatattacca gccccctgaa cgagaatcag gtcgttaccg
    15121 gttaataccg gtgccagcat ctcggctacc tgcgcagggt ccggcaccag aatgggatca
    15181 attttcccac gtccacgaat tgtgcgacac agcgaacggc tgtccgctcc cggaattggc
    15241 gcttcgccag ccggatacac ttccagcatc aacagggtat caacctgtgt cagcacattg
    15301 gcgaaatcat catacaggtc gcgcgtacgg gtaaaacggt gcggctgaaa cagcattacc
    15361 aggtttttat ccggccagcc tgcgcgcgcc gctttaatgg tggcgtcaac ttccgtcggg
    15421 tggtggccgt agtcatcgac cagcattgcc gtaccgcttt taccattcac tggctccagc
    15481 gggaattcac cgaggaaatc aaaacggcga ccagtcccca ggaagctctc cagcgcacgc
    15541 aaaatagcct cgtcgtcaat tccctcttcc gtagcaaccg caaccgcagc tgcggcgttc
    15601 agcgcgttat gacggcctgg cgcattcagg gtgacgcgca tcggctcttt gtcctggcgc
    15661 agcagcgtaa agtgcccctg cgggccaatc tgctgataat cttctacacg cacgtcggca
    15721 tcttcgctga agccgtaagt cgtggtctga cgtcccacac gcggtaacaa ttcgcggatc
    15781 accggatcat caacacacat caccgcacga ccgtaaaacg gcaggttgtg cagaaaatta
    15841 ataaaagtct gttttaaatt ctcaaagtcg ccctggtagg tatccatgtg gtcggcttcg
    15901 atattggtga caatcgccac catcggttgc agatgcagga acgatgcatc actctcatct
    15961 gcttcggcaa tcaggtaccg accatgcccc aaacgcgcat gaacccccgc cgcttttacc
    16021 agcccgccgt taacgaaggt tgggtcgagc cccgcttctg cgtagatgct ggaaaccatc
    16081 gcggtggttg tcgttttgcc gtgcgttcct gcaatggcga tgccatgacg aaaacgcatt
    16141 aactcagcca gcatttcggc acgacggatc accggaatac gcgcttcatg agctgcgaca
    16201 atttccgggt tatcggcaga aatggcgctg gaaacaacga ccacgctggc atcacgtacg
    16261 ttttccgggc gatggttgaa ataaatcgtc gctcccagat tcattaactg ctgcgtgacc
    16321 ggatttggcg ctaaatcgga accactgatc tgataacctt cattggccag aacttcggca
    16381 ataccgccca taccggcacc accgatgccg acaaaatgta tgtgccgaac gcgacgcatt
    16441 tcgggcacga tggaacgcag ttttgccaat tgttgtgtat tcattcttta cgccattaac
    16501 ttcttaaatt catacgatgc aaaaggcatc gctacaatta cgcccgggca gcccggctca
    16561 cttcatttgc cactcgctcg gtggcatccg gaatggatgc agcgcgggcg cgttctgcca
    16621 tggttaataa ggtttctcgc gaccacccgg ccagggtgtt ggcgacagca tccacgctaa
    16681 gctgtggctg ctcgataatt ttggctgcgc ccgctttttc cagcggtagc gcattccagt
    16741 attgctggcg gtctttatgt tgaaacggca caaacaacgc cggtagtcct gccgcggcga
    16801 tttcactcac cgttaaagca ccggagcggc aaacgacgac atccgcccac gcatacgccg
    16861 ccgccatatc atcaataaat tccgtcactt tatgctgcgg ttgccccgct tcggcatacg
    16921 cctgttcaac ggattgttgc gaacctttac cgctctgatg ccagatagtg actgaatcac
    16981 ccagtttcgc agcaacctgc ggcattgtct ggttaagaat gcgtgcgccc tgggaaccac
    17041 ccactaccag cacacgaacc ggaccttcac gtccagccaa acgttgctgc ggcaacggca
    17101 gcgccagcac atcggtacgc accgggttac ccaccacttc cgcattaggg aaagcgcctg
    17161 gaaacgcctg catcactttg gtggcaatct tcgccagcca tttattggtt aagcccgcaa
    17221 taccgttttg ttcatgaagt acaaccggaa tgcctaacga ccacgcggcc agaccacctg
    17281 gacctgatac atagccgccc ataccgagta ccacgtcagg tttgtacgct ttcataatcg
    17341 cccgcgcctg acgccaggcg ttgaagatat gcagcggcgc agctatcagt gcttttatac
    17401 cttttccacg cagaccagag atacgaatga aatcaatttc gatgccatgt tttggcacta
    17461 agtccgcttc catacggtcg gcagtcccca gccagcgaac ttgccaaccc tgagccatta
    17521 gatggtgcgc aaccgccagt cccgggaata catgtccacc ggttccgcct gccatcacca
    17581 ttaatcgctt tccttgacca ctcatcgtga acctcgtaca aacgcctgcg ctttctccag
    17641 acgcgtttca taatcaatac gcaacagcat catgatggct gtcgacataa tcagtaagct
    17701 cgaaccaccg taactgatca gcggcaatgt cagacctttg gtcggtaaca tccccgccgc
    17761 cgcgcctacg ttaaccagcg cctggaaact aaaccagatg ccaatagaac aggcgagaaa
    17821 accggaaaaa cggtggtcaa tttctaacgc tttgcggcca atcgacatcg cgcgaaaagc
    17881 gacgaagaat accattaaaa gtgccagcac cacaccgaca taccccagtt cttcgccgat
    17941 aatggcgaaa ataaagtcag tgtgcgcttc cggcagatac tccagttttt gtaccgagtt
    18001 acctaaacct tgtccccaaa gttcgccgcg accaaacgcc atcagcgatt gcgttaactg
    18061 atagccgctg ccaaagggat cttcccacgg gttccagaat gcggtaacac ggcggatacg
    18121 gtacggttcg gcgagtatca gcaacacaac cgctgaaatg cccataccga taatggcaat
    18181 gaactgccac aatttcgctc ccgccaggaa caacatcgcc agcgtagtca caaacaccac
    18241 caccaccgta ccaaggtctg gctgtgccag cagtaacact gccaacacca gaatcacgcc
    18301 catcggtttc aggaagccgc gcaggttatt acgtacttcg tcgcctttac gcaccagata
    18361 gttggcgata taacaaaaca gcgacagttt tgtcagctcc gcaggctgga tacgcagcaa
    18421 accgagatcg atccaacgcg atgccccttt aaccgagcta cccactacca gcacgatcat
    18481 cagcaggatg atagatccga gcagcatcgt ggcactgtag cgttgccaga actccatcgg
    18541 cagacgcagc gtaatgatcg ccagaatgaa tgccaggatc agatagacgc catcacgctt
    18601 cgcgaagaag aacggatcgt tggttaagcg ttgccctatg ggcattgacg ccgaggtcac
    18661 catgataaag ccaatcgccg caaggccgaa ggtcagccac agtaaggtgc gatcgtacat
    18721 gatcaggctg tcggtatctt tttcccgcga gcccatcacc cagcctttta gcgccgtgga
    18781 gatccagacc aggatactga atcctggcag gcgcggcatt ttcaggcgag ggagagataa
    18841 acgcatcaac ctaactcctt cgccagacgg gcaaactcat tgcctcgttg ttcaaagttc
    18901 ttgaactgat caaggctggc acaggccggg gagagcagaa ccatatcgcc cggctgaaca
    18961 cgcggagcca gcaagcgcat cgcctgttcc atagtttcgg tttgttctgc cacttccggg
    19021 cgtagcgccg ccagctgcgc accgtcacga ccaaaacagt acaaacgcac gttgtcgcca
    19081 ttcagatagc gcgccagtgg actgaagtcc gccgatttac catcgccgcc cagcaacaaa
    19141 tgcagcgtgc cgtctacctg caagccattc aacgccgctt ccgtactgcc gacgttagtg
    19201 gctttcgaat cgttaatcca gcgtacgcca ttgtgctcca gcaccacttc aaagcgatgc
    19261 ggcagaccgg tgaaggtggt taacgctttc aggctgctgg cgcgcggcaa accagctgcg
    19321 tctgccagtg ccagtgctgc cagcgcattg gtgtagttat gctgcccaga aagtttcatc
    19381 tctttcacgt tcagcacttt ctcgcctttc actcgcagcc aggtttctcc ctgctgatga
    19441 ttcaggtgat agtcacccat gttgacgcca aagctgacgc agcgttcatc agcaccgcga
    19501 atcggcattg ttaaggcatc atcagcattg acgacacaaa ctttcgcatt ttcgtaaata
    19561 cgcaattttg ccgcacggta ttgctgcaaa ccaaacggat agcggtccat atgatcttca
    19621 gtcacgttca gaatggtcgc cgccaccgcc tgtaagctgg aagtggtttc cagctggaag
    19681 ctcgacagtt ccagcacgta cagttcgcac tcagcatcaa gcagcatcaa cgctggcagg
    19741 ccaatattgc cacccacacc aacgttaacc cccgccgctt tcgccatttc acccactagc
    19801 gtggtgaccg tgcttttgcc gttagaaccg gtaatcgcca caatcggtgc ttgtgcttcg
    19861 cggcagaaca gctcgatatc gccaacgatt tcgattccgg catcagcggc agcgcttaag
    19921 gatggatgcg cccgtgcaat accgggactg gcgacaatca gatctgccgc catcagccat
    19981 tcatcattca gactgcccgt gtggcgttct acggcttcgg gtaatttatc caggccaggc
    20041 ggtgtcatac gcgtatccat aacgcgcggc gtcacaccgc gagcgaggaa aaagtccacg
    20101 caggaaagcc cggtgaggcc caggccgata atgacgacat ttttaccctg ataatcagcc
    20161 atgattaacg taccttcagc gttgccagac caatcagaac cagcatcagc gaaataatcc
    20221 agaaacgcac aatgacgcgc ggttccggcc agcctttcag ttcatagtgg tgatgaatcg
    20281 gtgccatgcg gaaaatacgt tgtccgcgca gtttaaagga gccgacctgc aggatgacag
    20341 aaagcgtttc taccacgaac acgcccccca taatcaccag caggaattcc tgacgtagca
    20401 gtacggcgat aatgcctaac gcaccaccta acgccagcga acctacatcg cccataaaga
    20461 cctgcgccgg ataggtgtta aaccacagga agcccagtcc tgccccgact atcgcggtac
    20521 agacaataac cagttccccg gcgtgtcgca gatacggtat gtgtaaatag ctggcaaagt
    20581 tcatgttgcc ggtcgcccac gccaccagcg caaaaccacc ggcgacaaat acggtcggca
    20641 taattgccag gccgtcgaga ccatcggtca ggtttaccgc gttgccagta cccacaatga
    20701 cgaagtaagc cagcagaatg tagaacagcc ccaactgcgg catcacatct ttaaagaatg
    20761 ggaccaccag ctgcgttgcg ggcgtgtctt tgccggcaag gtacagggcg aaggcgacac
    20821 ccagcgcaat gaccgacatc cagaaatact tccaacgagc gatcaaccct ttggtgtctt
    20881 tacgcaccac tttgcgataa tcatcaacaa agccaataac agcgtaacct accagcacca
    20941 ccaacacgca ccagacgtac ggattggacg ggtaagccca cagcagtacg gagatcacaa
    21001 tcgccgtcag gatcataatc ccgcccatgg tcggcgtacc gcgcttgctg aagtgtgatt
    21061 caggaccgtc gttacgcacc acctgaccaa aggaaagttt ttgcaaatga gcaatcatac
    21121 gcgggcccat ccacaatgag atgaacagcg cggtcagcag gctgacgatg gcgcgaaacg
    21181 tcagatagga aaagacgtta aagccggaat aatatttgac caaatgttcg gccagccaaa
    21241 ctaacatgtc ccattctcct gtaaagcgcg tactacctct tccatggcgg cactacgtga
    21301 acccttaact aaaatcgtaa ttacctgttg ctcagcaatc agtgatttaa gacgcgtaat
    21361 taacgcagtt ttatcagcaa aatgttcgcc aacgccgctg gcggtgctga tagcatggct
    21421 ttgtttaccc acgcttaaca cgcggtcaat accagcagct tttgccgcct cgcccacctg
    21481 tacatggcag gcttcgcttt cagcgcccag ttccgccata tcgcccacca ccagcacgcg
    21541 gtagcccggc atttcagcca gtacctgaac agcggcggtc attgaaccga cattggcgtt
    21601 gtaggagtcg tcgagcagca actggttttc tgccagttgg atggggaaca gacggcctgg
    21661 aacagctttc agatttgcca gccccgcttt gatagcatca agcgttgcgc ccacggacat
    21721 ggagagcgca gcggctgcca gcgcattcgc aatattgtga cgccccggca acggcagcag
    21781 aacatcgacg ctaccggttg gggtttgtag ggtaaattcc gtaccgtgcg aggtcacatg
    21841 gatattggtg gcggtgaaat cgctgttggc ggcattgggt gagaaacgcc acactttgcg
    21901 tgagccaatt acgctctgcc agttcagcca gtcgttgttg tcggcgttca taatggcgat
    21961 accgttttcc ggcaggccgc taaagatttc acctttcgct ttcgcgacac ccgcaagcga
    22021 gccaaaacct tccagatgcg ccgctgccag gttgttgacc agcgcagctt ccgggcgagt
    22081 cagactcaca gtccaggcta tttcgccctg atggttcgcg ccaagttcaa taactgcgta
    22141 atcgtattcc ggcgttaagc gcaacaacgt catcggtaca ccgatgtcgt tgttgagatt
    22201 gcctgccgta taaagcgtgt tgccgcactg gcttaaaatc gccgccgtca tctctttaac
    22261 ggaggttttg ccggaggaac ctgtcagagc aaccacgcgc gccggaactt gctggcgaac
    22321 ccatgcagcc agttcaccaa acgccagacg cgtatccttg acgattaact gcggcaggtc
    22381 gatatccagc ggacggctga ccagtagtgc gcccgcgccg ccagctttcg cctggtcggc
    22441 aaaatcgtgg gcatcaaaac gttctccttt cagggcaaca aacaggcagc ccggcgtcag
    22501 ttttcgggta tcagtggtta cagcatcaag ggtgatatct gcaccttgca gttcaccgtt
    22561 gagaatgtcg gtaagttggc taagggttac gctaatcatg caatcacccc cagcagacgc
    22621 gccaccgtga cgcgatcgga gtagtccaga cgctgattgc caacaatctg gtaatcttca
    22681 tggcctttgc ccgcgaccag caccacatcg ttctctttag cctgcataac ggcgcaagtc
    22741 accgcttcag cacggccttc catcactttg gcatgtccgg catctaacat tcccgccaga
    22801 atatcgttga tgatggcacg cggttcttcg gtacgcgggt tatcgtccgt caccaccgcc
    22861 acgtcagcaa actcttcggc aattgcgccc atcagtggac gcttaccttt atcgcgatcg
    22921 ccaccacagc caaagacaca ccacagcttg cccgcacagt gcagacgcgc cgcctgtaag
    22981 gctttttcca gtgcatccgg cgtatgcgcg taatccacca ccaccgtcgg tttgcctggc
    23041 gcagtgaaca cttccatacg tccgcaaacc ggttgcagac gcgcggcggt tttcaacaga
    23101 tcagccaatg gatagccgag tgccaacagt gtcgccagcg cgagcagcag gttgctgacg
    23161 ttaaaagcgc ctatcagatg gctttcaatt tcgccatcgc cccaacttga gctaaagcga
    23221 atcgtcacac cgctgtcgtg atagttcacg tcgatcactt ttaaccagcg tccgtgacag
    23281 ttcggattaa tatgatcttc cattgatacc gcaaccgcgt ccggcagctt tgccagccaa
    23341 cggcggccca cttcatcgtc ggcgttaata atcgcctgac cgcaatgatg ttcagaataa
    23401 agcagccatt tcgcagcttc gtagtgttcc atatcaccat gataatcaag gtgatcgcgg
    23461 cttaagttgg taaagaccga cgccgcaaat ttcaatgccg ccacacggtg ctgtaccagc
    23521 ccgtgggagg aaacttccat tgcgcaaaac gtcgcgccct gctccaccag ccccgccagc
    23581 tcatgctgaa catcgactgc cgaaccggtg gtattttctg tcgggatcac tttccccagc
    23641 agaccgttac caacggtgcc cattaccgcg ctggtttcgc caagcagttg gctccactgc
    23701 gccagcagct gggtagtcgt ggttttgccg ttggtgcccg ttacgcctac gagacgtaaa
    23761 ttgtcagagg gttcatggta aaagcggccc gccagtgcag ataaacgctc gttgagctgg
    23821 ctgagataga tgaccggtac gccgtgcatt tcacggattt caccgtcggt cgcctcatct
    23881 ttcgcctctg caataatggc agccacacct tgcgctatcg cctgcgggat atatcgacgc
    23941 ccgtccgcct gatgacctac tacagctaca aagagatcgc ccgccgcagc cacacggctg
    24001 tcgagtgtca tctctcgcag tgctcgcgaa ggtgcgtctg gcacccacgg agcaagaagg
    24061 tcgcgcaaat tacgatctgc cacctgtccc ctcgccttga ttaatcacaa attcattttt
    24121 atcgcccgtt gtcagcgcat ccggctcgat gttcatggta cgcaatacgc cgcccatgat
    24181 ggcaccaaag accggcgcgg aaacggcgcc gccgtagtat ttacccgcct gcggatcgtt
    24241 gataacaaca accagcgcga agcgcggctg actcgcaggc gcaacgcctg cggtataagc
    24301 aatatattta ttgatgtagc gaccgtccgg cccaaccttt ttcgcggtac cggttttaat
    24361 ggcgatacga tagcctttaa tcgccgcctt cacgccgccg ccgcccggta gcgccacgct
    24421 ttccatcata tgcaccacgg tgcggacaat ggattccggg aaaacacgtt caccgggaac
    24481 cggggggtca actttggtaa tcgacagtgg gcgataaatg ccgtagctgc cgatagttgc
    24541 gtagactcgc gctaactgta acggtgttac cattagcccg tagccgaaag agaaggtggc
    24601 cctctctatg tcagaccacc gttgtttttg aggatataag ccactgcgtt ctccgaccaa
    24661 ccccaaattg gtcgcttttc ccagtccaaa acgtgagtaa gtatctacta acgctgagga
    24721 cggcatcgct aacgccagct tggaaacacc gacgttactc gacttctgta ataccccggt
    24781 cagggttaat tcgctgtagc gtgccacgtc tttgatttcg tggccgttaa ttcgataagg
    24841 aatggtattg agtaccgagt tttcccgcac cacgccacgt tgcaacgcgg tcatcaccac
    24901 catcggttta accgttgagc ccggttcaaa cacgtcggtg atggtacggt tacgcatcgc
    24961 ctctttcggc gtgccgctca gattgttagg gttgtatgac gggctgttag ccatcgccag
    25021 cacttcacct gtgttgacat ccaccagcac ggcgctacca gattcagcct tgttaaaggc
    25081 caccgcgttg ttcagttcgc gataaaccag cgcctgcagg cgttcatcaa tactcagcgc
    25141 caggttgtgc gctgcctggc tgtcagtaga agaaatatct tcaattacgc gaccatagcg
    25201 gtctttacgc acaatgcgct cacccggctg cccggtaagc catttatcga aactcttctc
    25261 aacgccctca atcccttgac tatcgacgtt agtaaagcca atgaggtgag cagtcacttc
    25321 gccggatgga taataacggc gagattcttc acgcagatga atacccggca gtttcagttt
    25381 tttgatgtag tccgccatgt cagggtttac ctgacgcgcc agataaataa agcgcccttt
    25441 cgggttggcg ttaatgcggg cagaaagctg atccagcgga atattgagcg cgttagccag
    25501 cgccttccag cggtcaccga cgctgatacc gccagcgtca tgcacttctt tcgggtcagc
    25561 ccaaatcgct tttaccggca cgctcaccgc taacgggcga ccagaacggt cagtaatcat
    25621 gccgcgggag gtggaaactt gctgaacgcg aagagaacgc atgtcgccct ctttcaccag
    25681 catatccggg gagataactt gtaaccacgc tacgcgtcca agcagaaaag ccagcgccag
    25741 gagaatacag ccgcataaca acgcaaaacg ccaactaata aagttggcat gttcttcctg
    25801 acgttttggt ttctgcgttt tcgccgctgc tttcatgcgt cgcgtttatc cttatttttg
    25861 cactacgata ttttcttgtg acggatcaac atgctgcatt tgcagctttt ccgtggcgat
    25921 cctttccacc cggctatggt cgccgagcgc attctcttca aggatcaggt tgcgccattc
    25981 aatgtctaaa gcatctcgct ccagcaccag ttgttcgcgc tgagcggtca gtaaacgggt
    26041 atggtgcgcc gtggttacca cggtcaccgc cgtcaaaata atgcaaatga acaggcagag
    26101 tggcagcttc ccaaatcgca aaagatcgtc accgataaca ccaggcaatg catggcgctc
    26161 gtggcttccc atcgatcctt taactttgct tagagcttct gtcactctgc tgatcatgcg
    26221 ttcgtcctct ctgcgatacg cagaactgaa ctacgggcac gaggattctc agccacctct
    26281 tcttcgcccg gcattaactt gcctaatgct cgcagctgac ggccacccag ttttttgagc
    26341 tgctcttcag tcatcggtaa ccctgccgga acttgcggac cgcggctgtt ttcacgcata
    26401 aaacgtttca caatacggtc ttccagcgag tggaagctga tgatcgaaag ccgcccaccc
    26461 ggggccagca cgttgagcga gctttttagc gcctgctcta tctcctccag ttcactgttt
    26521 acccaaatgc gcaccgcctg gaaggtacgg gtcgcgggat gtttaaactt atctttcacc
    26581 ggcgttgcag cagccacgac ttccgccagt tctttggtgc gggtcatcgg ctgttcgcgg
    26641 ttacgctcga caatggcgcg ggcaatgcgt ttggcaaaac gctcttcacc ataggttttc
    26701 aatacccagg cgatatcggc ttcttctgcg gtttgtagcc attcagcggc tgactgccca
    26761 cgggttgggt ccatacgcat gtccagcgga ccatcgcgca taaaggaaaa gccacgttca
    26821 gcatcatcaa gttgcggtga agagacgcca agatcgagga gaatgccgtc gatcttgccg
    26881 ataagatcgc gctcggcaac gtattcgccc agcgcggaga aaggtccgtg gatgatggag
    26941 aagcgcggat catcaatagt cttcgcaacg gcgatagcct gcgggtcgcg atcgatcgcc
    27001 agcaaacgcc cctcttcgcc aagctgcgag aggatcagac gtgagtgacc accgcgacca
    27061 aaagtcccat caatgtagat gccatcagga cggatattga ggccattaac ggcttcatcc
    27121 agcagcaccg tagtatgttt atagttttcc atcattttat agagacaagt cctgcagtcg
    27181 ctccgataag tctccagtag ccaactgctc tgcgtcgata tcttccttga cctgttgatg
    27241 ccaggttgtt tcatcccaca gctcaaactt gttgaactgt ccaaccagca tcacttcttt
    27301 tgtcagcccg gcatgttgcc gcagtactgg cgcgattaac aatcgacctg cgccatccat
    27361 ctgacattcg ctggcatgac ctaacagtag gcgctgcaca cggcgctcaa ctgggttcat
    27421 gctcgacaga cgcgataatt tttgctcgat aatttcccat tcaggcaggg ggtaaagcag
    27481 caggcacggg tgatgaatgt caatggtgca aaccatttga ccggcagcgt tctcaagcag
    27541 ctgttcccga taacgggtag gcactgataa gcgccctttg ctgtcgagat tgactaacgt
    27601 tgctccccgg aacatgccag cctcacccct tattcccact ttgccccaca atttcccact
    27661 gaaaggagtt tacggagcgg aggaaaagct tgtcaagcca gtcacaaggc ataccgaggt
    27721 aaaaaacccg atgtttacgg ctaatatcag cgttgtttat tttacgtcca acgcgcgaag
    27781 caaattaacg ttatgaatag ctgtaagaaa aaatccctca tcgtcatcac tgttttaaaa
    27841 tgactcacta ttttccacag caaatataaa gtgtcagttt gcgacgcgag cggcatttta
    27901 ggacatatct tccccggtta acagtccttg ttacgtctgt gtggcgcttg atgccagcag
    27961 gtttgcgcaa aagcaaagaa aagtgtttgt taaatcggca attcatcgcc gcatgtaaca
    28021 aaataatgca aaaacgcgct gtcgatatca cttaattatt gtgaatttca gctggtgagt
    28081 taattaacgg gcgggtttaa aaccatttat caataatagt caggaatagt cttatttact
    28141 ttaagcatat tgatgtccag tcccgtactc tacgcgccag agggaaattc acctggcgcg
    28201 tatttttgtt cgcggcttag ctacggctga gcacaccgcg gcgatagaga ttacgtttaa
    28261 tgcgcgttaa accaggtttt ggcttacgcg gttcgtccag gcttgccagg acaatctcca
    28321 gcacacgctc tgcgacatcg cggtgacgtt gagccactgc cagcaccggg cactgtaaga
    28381 agtcgagcag ttcgttatcg ccaaaggtgg caattgccag gtcagaaggc agtttaccat
    28441 cgcgacgtag cgtgacatcc atcacccctt gcaacaacgc aaacgacgtt gtgaacagcg
    28501 cctgcggcat cggatgcgtt tccagccatt tttcgaataa ctgggcagcc gcctcccgct
    28561 catagctgtt ggcatacagg aaatgcactt cgcgcggatc atctttccag gcagtacgga
    28621 aaccttgttc acgcaggaag ctgacagaaa gctccggcag cgcgccaaga taaagcaccg
    28681 tctcggcggg aaacttacgt aactcttccg ccagcatttc ggcatcatcc tgatcggcac
    28741 caaccacgct ggtgaaatgt tcacgatcga gggcgcggtc cagcgcgaca atcgggaacg
    28801 ggtcgttagc ccagcgttga taaaaaggat gctcaggtgg caacgacgtc gaaacaataa
    28861 tggcatcaac ctgacgctgt aaaaggtgct caatgcagcg catttcgttg tctggctgat
    28921 cttctgagca ggcaatcagc agttgataac cccgttgccg cgcctggcgc tcaagatagt
    28981 tagcgatgcg ggtatagctg gtgttctcca gatcggggat cacaagacca atagaacgtg
    29041 tgcgtccagc acgaagccca gctgccacgg cgttcgggtg gtaattgtgc tcacgcacca
    29101 cagccatgac tttttcaacg gttttgtcgc tcacacggta ttgcttcgct ttgccgttaa
    29161 taacatagct tgcagtggtc cgcgacactc ccgccagccg agcgatttca tccagtttca
    29221 caattgcccc ttgcgtaaaa tgtaaaaacc atagccattg tactggtatg ggttaaattc
    29281 attaacatct aagcgcagaa aattaactgc ggcaactgct tttattccag gttcccactg
    29341 atttcgcaaa aaaagcccaa cgtgacatgt tgggctgcaa attgcacact gagatcattc
    29401 tcaacgcatt attttatcgc cgcgcgaaag tccgaccaca ccagagcgag caacttccac
    29461 aattttcgcc acctcgcgaa tcgatgctaa aaatgcatca agcttatcgc tggtgcctgc
    29521 taattgaacg gtataaagcg agggggtgac atcgataatt tgcccacgga atatttccgt
    29581 attacgtttc acttcgtcac gcccgtaacc gctggcctga attttcacca gcatgatttc
    29641 ccgctcaaca tgcgcgccct gccccaactc actcacgcgc aagacatcga ccagcttgtg
    29701 taattgcttt tcgatctgct caagtacttt ttcatcgccc acggtctgga tggtcatacg
    29761 cgataatgtc ggatcgtcgg ttggcgcaac ggtcaggctt tcaatgttgt agcctcgctg
    29821 ggaaaaaagg ccaatcacgc gggataacgc gcctgattca ttttcgagta agactgataa
    29881 tatccggcgc ataatcaggt tctctccgtt ttgcttaacc acatttcatc cattccgccc
    29941 ccgcgaatct gcatcgggta gacgtgctca ctgccatcga cggtaacatc aacaaacacc
    30001 aggcgattat tgcgcacctg ttccagcgcc tcgctaagtt tgctttccag ctcatgcgga
    30061 tgagagatct ggatcccgac gtgaccatag gcttccgcca gacggacgaa atcgggtagt
    30121 gattgcatat aagattgtga atgacggccg gaatagatca tgtcctgcca ctgtttcacc
    30181 atccccagat agcggttatt gagattcacc accagtacgg gcaactcgta ttgcaacgcg
    30241 gtagacagtt cctgaatgtt catctgaata ctgccgtcgc cagtgacgca aaccacggtt
    30301 tcttctggca acgccatttt gacgcccagt gccgcaggta aaccaaaacc catcgtgccg
    30361 aggccaccgg aattgatcca gcgacgcggt ttgtcgaatg gataataaag tgcagcaaac
    30421 atctggtgct gcccgacatc ggacgtcacg taagcgtctc ccttcgtcaa ccgccaaaga
    30481 gtctcgatca ccgcctgcgg tttaatcttt tcactgtgag tgtcatattt caggcactga
    30541 cgagcgcgcc actgttcaat ttgctgctac cagtcgcgga tctcatccag tggttgatgg
    30601 gcggattctt gcgacaagag ttcaagcatt tgttcgagga cctggcgagc atcccccaca
    30661 atcgggatat ccgcagtcac ggttttagaa atggaagtag gatcaatatc gatatgcaga
    30721 acagtggcat ttgggcagta ctttgccaga ttgttcgtcg ttcggtcatc aaatcgtacc
    30781 ccgacggcga aaatcacatc cgcgttatgc atcgtcatat tggcttcgta ggtaccgtgc
    30841 attcccagca tgcccagtgc ctgacgatgc gttgccggaa acgcccccag ccccatcaat
    30901 gaggaaacaa cgggcagatt caacgcctcc aacgtttctt tcaactgctg atggcagccc
    30961 gccatgattg ccccaccgcc tacgtagaca accggttttt ttgccactac cagcgtttgc
    31021 agagcacgct taatttgccc tttatgtccg gtagtagtgg gattgtaaga acgcatactg
    31081 accgactccg gccagacata gggtaatttg ttcgccggat taagaatatc tttcggtaaa
    31141 tcaacgacta ctggtccagg acgaccactt gccgccagcc agaaagcctt tttcagcacc
    31201 tgcggaatgt cttccgtttg cttaaccaga aaactgtgtt taaccactgg tcgcgaaatc
    31261 cccaccatgt cgcactcctg aaaggcatcg taacctatca acgaggtcgc tacctgcccg
    31321 gaaaggacaa ctaatggaat ggaatccata taagcggtgg cgatgccggt aatcgcattg
    31381 gtcgcccctg gacccgacgt taccagcacg acgccgactt ccccggtcgc gcgcgccaga
    31441 ccatcggcca tatgcactgc cgcctgctca tgacgaacta aaacatgatc gataccacac
    31501 acggtatgca atgcatcgta aatatcaagg actgcgcctc caggataacc gaatacttgt
    31561 ttaacgccct gatcgataag cgatcggacg accatctcgg ctccagacaa catctccatg
    31621 gcctgcctca ctgtttgatg gaaaaaatgt gtaaaacaca ttaaccgtcc gatcttgctt
    31681 aagcaattgg cagccagaga cataaacgca gggtaataag aataaacagg aggaaaggtg
    31741 aaaagaaacg ataaaatcct ccattacgaa ggattaaatt gataataaat cggctgaatc
    31801 ccacaactta cagcaatttc tctatttttt taattaatcc taaaatagag agcccacaca
    31861 ttcagaataa aattctacat tcaataaaaa atgcagaata aaccagacat tcatgtctga
    31921 cctattctgc attcagttag cgtttgcaaa ttgagactaa ttgttcttcc atccactgat
    31981 ggcctttatc gcgcccggca gcttcatgcc atgagagata acaggttctg ctgttttgtt
    32041 ttaacagcag cggtaatacc tgtaattcta aggattcagc gaactcttca gccagccaac
    32101 gcggcgcaat agcgaccaaa tgcgtttgcg acaccacgct aagtacgctc atcattgcca
    32161 tgccctgata cgcgatactg gcttgcttat ctaccgtgtc ataccaaggt tgactaaatg
    32221 acgcgaaacg atcgagcgaa accgccgcat gttgttcgtt ataaacatca tgtttcagta
    32281 acgggccttt aattgttgga tgatttttgc tggctaccag caccatttca tctttaaata
    32341 atggcacgct ggtaaattca ggacgatgga agtcttcata actaatcaca aactccgttt
    32401 cctgataacg cagctgatgt tcagtgttct gatttaatga agacttgaac ataacatgta
    32461 tatttggcgc aatctgctca atgtgattat aaatctgcga ggtcagaatg ctgtctaacg
    32521 ggctgcaaac acaaagatga aatacacgtt cactactcgc gggttcaaaa cctgaaccag
    32581 gcaattcatt ttgtactagt tgcaatgcct ggcgaactga accaaaaagt tgaaatgcgc
    32641 gagcagtcgg ttgaatacca cggccataac gaacaaaaag ctcgtcatta aacatcacct
    32701 tcaggcgtgc aacagcgtta ctgaccgcag gttgcgacat acccagaaca tgagcggcac
    32761 gggtaatgtt ttgctcctgc atcacggcat cgaaaacggt taataagttg agatcgacca
    32821 tgcgtagctg tggcttgctt aactccgccg tctctgaatg atctgtttgt acctctggca
    32881 tacttaactc cactgtcaca cttaactccc tttcccttat tggaatgcag agaaataatc
    32941 ctgaagaata tgatttatca tgcatataaa ataagaaaaa gcaaaatgag taaaattcgg
    33001 aaaacataaa gatacgggtt ctgataaaaa cagaatccat tgccgtggaa tgagtcattt
    33061 accacagcat aataatccat aatgtttttg ttgcgaaaac aatctaatca taactaccgc
    33121 gaatactcaa tcatctacaa aatggattaa atgtgcttat ttaataatta atttatatat
    33181 ttaatgcatt aattattaac attaatggat caataatatt caccaaatca atatcaaaaa
    33241 aaattcgcaa aacatataat tcaatacaaa tcatcaggat aggttttgca acgcgtgcat
    33301 tttgtcccct ttttcctcgt tgattagatg caaaaattta ttctgaaata tgtcaaccta
    33361 tgaaaagtgt cggtcgttaa acagaaatta atatcgcttg ctttaaccac cgcagcacaa
    33421 ttagctaatt ttacggatgc agaactcgcg ctggcgggac gtttttattg cgtcagggtt
    33481 gacatccgtt tttgtatcca gtaactctaa aagcatatcg cattcatctg gagctgattt
    33541 aatgactcac atcgttcgct ttatcggtct actactacta aacgcatctt ctttgcgcgg
    33601 tagacgagtg agcggcatcc agcattaagc cagcacgcag tcaaacaaaa aacccgcgcc
    33661 attgcgcggg tttttttatg cccgaagcga ggcgctctaa aagagacaag gacccaaacc
    33721 atgagccagc aagtcattat tttcgatacc acattgcgcg acggtgaaca ggcgttacag
    33781 gcaagcttga gtgtgaaaga aaaactgcaa attgcgctgg cccttgagcg tatgggtgtt
    33841 gacgtgatgg aagtcggttt ccccgtctct tcgccgggcg attttgaatc agtgcaaacc
    33901 atcgcccgcc aggttaaaaa cagccgcgta tgcgcgttag ctcgctgcgt ggagaaagat
    33961 atcgacgtgg cggccgaatc cctgaaagtc gccgaagcct tccgtattca tacctttatt
    34021 gccacttcgc caatgcacat cgccaccaag ctgcgcagca cgctggatga agtgatcgaa
    34081 cgcgctatct atatggtgaa acgcgcccgt aattacaccg atgatgttga attttcttgc
    34141 gaagatgccg ggcgtacccc cattgccgat ctggcgcgag tggtcgaagc ggcgattaat
    34201 gccggtgcca ccaccatcaa cattccggac accgtgggct acaccatgcc gtttgagttc
    34261 gccagaatca tcagcggtct gtatgaacgc gtacctaaca tcgacaaagc cattatttcc
    34321 gtacataccc acgacgattt aggcctggcg gtcggcaact cactggcggc ggtacatgcc
    34381 ggtgcacgcc aggtggaagg tgcaatgaac gggatcggcg agcgtgccgg taactgttcg
    34441 ctggaagaag tcatcatggc gattaaagtt cgtaaggata ttctcaacgt ccacaccgcc
    34501 attaatcacc aggagatatg gcgcaccagc cagttagtta gccagatttg taatatgccg
    34561 atcccggcaa acaaagccat tgttggcagc ggcgcattcg ctcactcctc cggtatccac
    34621 caggatggcg tgctgaaaaa ccgcgaaaac tacgaaatca tgacaccaga atctattggt
    34681 ctgaaccaaa tccagctgaa tctgacctct cgttcggggc gtgcggcggt gaaacatcgc
    34741 atggatgaga tggggtataa agaaagtgaa tataatttag acaatttgta cgatgctttc
    34801 ctgaagctgg cggacaaaaa aggtcaggtg tttgattacg atctggaggc gctggccttc
    34861 atcggtaagc agcaagaaga gccggagcat ttccgtctgg attacttcag cgtgcagtct
    34921 ggctctaacg atatcgccac cgccgccgtc aaactggcct gtggcgaaga agtcaaagca
    34981 gaagccgcca acggtaacgg tccggtcgat gccgtctatc aggcaattaa ccgcatcact
    35041 gactataacg tcgaactggt gaaatacagc ctgaccgcca aaggtcacgg taaagatgcg
    35101 ctgggtcagg tggatattgt cgccaactac aacggtcgcc gcttccacgg cgtcggcctg
    35161 gccaccgata ttgtcgagtc ctccgccaaa gccatggtgc acgtactgaa caatatctgg
    35221 cgtgccgcag aagtcgaaaa agagttgcaa cgcaaagctc aacacaacga aaacaacaag
    35281 gaaaccgtgt gatgtcgaag aattaccata ttgccgtatt gccgggggac ggtattggtc
    35341 cggaagtgat gacccaggcg ctgaaagtgc tggatgccgt gcgcaaccgc tttgctatgc
    35401 gcatcaccac cagccattac gatgtaggcg gcgcagccat tgataaccac gggcaaccac
    35461 tgccgcctgc gacggttgaa ggttgtgagc aagccgatgc cgtgctgttt ggctcggtag
    35521 gcggtccgaa atgggaacat ttaccaccag accagcaacc agaacgcggc gcgctgttgc
    35581 ctttgcgtaa gcacttcaaa ttattcagca acctgcgtcc ggcaaaactg tatcaggggc
    35641 tggaagcatt ctgtccgctg cgtgctgaca ttgccgctaa cggcttcgac atcctgtgcg
    35701 tgcgcgaact gaccggcggc atctatttcg gtcagccaaa aggccgcgaa ggtagcggac
    35761 agtatgaaaa agcgtttgat accgaggtgt atcaccgttt tgagatcgaa cgtatcgccc
    35821 gcatcgcgtt tgaatctgcc cgcaagcgtc gccacaaagt cacctcaatc gacaaagcca
    35881 acgtgctgca atcctctatt ttatggcggg agatcgttaa cgagatcgcc acggaatacc
    35941 cggatgtcga actggcgcat atgtacatcg acaacgccac catgcagctg attaaagatc
    36001 catcacagtt tgacgtcctg ctgtgctcca acctgtttgg cgacattctg tctgacgagt
    36061 gcgcaatgat cactggctcg atggggatgt tgccttccgc cagcctgaac gagcaaggtt
    36121 ttggtctgta tgaaccggca ggcggctcag caccagatat cacaggcaaa aacatcgcca
    36181 acccgattgc gcaaattctg tcgctggcac tgctgctgcg ctacagcctg gatgccgatg
    36241 atgcggcttg cgccattgaa cgcgccatta accgcgcatt agaagaaggc attcgcaccg
    36301 gggatttagc ccgtggcgct gccgccgtta gtaccgatga aatgggcgat atcattgccc
    36361 gctatgtggc agaaggggtg taatcatggc taaaacgtta tacgaaaaat tattcgacgc
    36421 tcacgtagtg tacgaagccg aaaacgaaac cccgctgtta tatatcgacc gccacctggt
    36481 gcatgaagtg acctcaccgc aggcgttcga tggtctgcgc gcccacggtc gcccggtacg
    36541 tcagccgggc aaaaccttcg ccactatgga tcacaacgtc tctacccaga cgaaagacat
    36601 taatgcctgt ggtgaaatgg cgcgcatcca gatgcaggag ctgattaaaa actgcaaaga
    36661 atttggcgtc gaactgtatg acctgaatca cccgtatcag gggatcgtcc acgtaatggg
    36721 gccggaacag ggcgtcacct tgccggggat gaccattgtc tgcggcgact cgcataccgc
    36781 cacccacggc gcgtttggcg cactggcctt tggtatcggc acttccgaag ttgaacacgt
    36841 actggcaacg caaaccctga aacagggccg cgcaaaaacc atgaaaattg aagtccaggg
    36901 caaagccgcg ccgggcatta ccgcaaaaga tatcgtgctg gcaattatcg gtaaaaccgg
    36961 tagcgcaggc ggcaccgggc atgtggtgga gttttgcggc gaagcaatcc gtgatttaag
    37021 catggaaggt cgtatgaccc tgtgcaatat ggcaatcgaa atgggcgcaa aagccggtct
    37081 ggttgcaccg gacgaaacca cctttaacta tgtcaaaggc cgtttgcatg cgccgaaagg
    37141 caaagatttc gacgacgccg ttgcctactg gaaaaccctg caaaccgacg aaggcgcaac
    37201 tttcgatacc gttgtcactc tgcaagcaga agaaatttca ccgcaggtca cctggggcac
    37261 caatccaggc caggtgattt ccgtgaacga caatattccc gatccggctt cgtttgccga
    37321 tccggttgaa cgcgcgtcgg cagaaaaagc gctggcctat atggggctga aaccgggcat
    37381 tccgctgacc gaagtggcta tcgacaaagt gtttatcggt tcctgtacca actcgcgcat
    37441 tgaagattta cgcgcggcag cggagatcgc caaagggcga aaagtcgcgc caggcgtgca
    37501 ggcactggtg gttcccggct ctggcccggt aaaagcccag gcggaagcgg aaggtctgga
    37561 taaaatcttt attgaagccg gttttgaatg gcgcttgcct ggctgctcaa tgtgtctggc
    37621 gatgaacaac gaccgtctga atccgggcga acgttgtgca tccaccagca accgtaactt
    37681 tgaaggccgc caggggcgcg gcgggcgcac gcatctggtc agcccggcaa tggctgccgc
    37741 tgctgctgtg accggacatt tcgccgacat tcgcaacatt aaataaggag cagaccatgg
    37801 cagagaaatt tatcaaacac acaggcctgg tggttccgct ggatgccgcc aatgtcgata
    37861 ccgatgcaat catcccgaaa cagtttttgc agaaagtgac ccgtacgggt tttggcgcgc
    37921 atctgtttaa cgactggcgt tttctcgatg aaaaaggcca acagccaaac ccggacttcg
    37981 tgctgaactt cccgcagtat cagggcgctt ccattttgct ggcacgagaa aacttcggct
    38041 gtggctcctc gcgtgagcac gcgccctggg cattgaccga ctacggtttt aaagtggtga
    38101 ttgcgccgag ttttgctgac atcttctacg gcaatagctt taacaaccag ctgctgccgg
    38161 tgaaattaag cgatgcagaa gtagacgaac tgtttgcgct ggtgaaagcc aatccgggga
    38221 tccatttcga cgtggatctg gaagcgcaag aggtgaaagc gggagagaaa acctatcgct
    38281 ttaccatcga tgccttccgc cgccactgca tgatgaacgg tctggacagt attgggctta
    38341 ccttgcagca cgacgacgcc attgccgctt atgaagcaaa acaacctgcg tttatgaatt
    38401 aatccccttg cccggtcaaa tgaccgggct ttccgctatc gtccacgtca tcaaacgtct
    38461 ttaacctttg cggttaaaaa taatgcgaca acagaaataa ccgcaattac ccagtagaca
    38521 gcaaagtgcc cccaactttg tgcaattgct ccctgaataa cgccagccag aattaccccg
    38581 gtagaaatac tgttagtaaa taaggtggta gctgcccccg ctcttccagg cattaaatcc
    38641 tgaaaccata gcatcccaat acccgcaaca atgccgataa atacagcgtt aaaaagttgc
    38701 agcgtcatca acgccatacg gctatgaaag aaaatcaatc cggtgtaaaa cagtactcct
    38761 gccgccactg ctatgaccat cattcgccgc ttaccataac gtttgacata gtagccagcc
    38821 agaatcattg ctggtatttc cagtccagct gccgtcccca tcaggaaacc cgccagtttg
    38881 tctggcaatc ctaactcgct actgatccac aacggcatat caataatgta catggtgttg
    38941 caggtccaca ttaacgtcga ggcgacaaat aacatccgta cgttactatc ctgccagcca
    39001 ccttgcattg ataaagcatt ttccgacggc agttctaccc gcgccacaga cggaagcata
    39061 aatgcaatca ataccagact gagtgtgaat atcccggcgg caatcgaaaa catcaccact
    39121 tctcgcgccg agttatccgc atattcccgc gccagagcaa ataactgtgg cattgccgta
    39181 ttggccagag atgccagaag cacaccacag gtgataagcg tcagataatg acgattaaat
    39241 gcaaacaatg gcgcattgcc gatagccatc aaacagcaaa atataatcag ttttcgccga
    39301 tcgccctgac tgtcagaacg ttttgccaac cagaggctta cgccgatccc agcaatagta
    39361 ttcaccgtat aaaagagtcc gatccagaaa ggttgcgcgc caacctcacg actcagaaat
    39421 aagctcaatg taggagcctg tagcgccccg gccaccccca tcataaaagc gaccagcata
    39481 aatgccgcgt aaacaccgtt catacggcga gccatcgtca ttatccagat catacgttcc
    39541 ctttttagcg cggcgagaat aaaaaaaacc agcaggtata atctgctggc gggtgatttt
    39601 acaccaatac tcagtcacac atgatgcagg caagtcaact ttcagaattg cggtcatccc
    39661 actgcatcag tccttcaagc atggttaatc gttgtgggac gcttaaccaa cgcaaccagc
    39721 acaacttcgc tgtcgcggta aaatagtgct gataaaactg acgcatgggg cacctccttg
    39781 cttcatcttt aggaattatt gacttaatat agggaaaata aaattgctgt cttttgcgca
    39841 ggagttcccc ttttatgcca tctgctcgtc tgcaacaaca gttcatccgc ctgtggcaat
    39901 gctgcgaggg taaatcgcag gacacaacgc tcaacgaact ggcagcgtta ttgagctgct
    39961 cgcgtcgtca tatgcgtacc ctgctcaaca ccatgcagga tcgcggctgg ctgacgtggg
    40021 aagcggaagt cgggcgcggt aaacgctcgc gtctgacatt cctctatacc gggctggcgc
    40081 ttcagcaaca gcgggcggaa gacctgctgg agcaggatcg tatcgaccaa ctagtgcagt
    40141 tggttggcga caaagcgact gtgcggcaaa tgctggtttc tcatctgggc cgcagcttcc
    40201 gccaggggcg gcacatcctg cgcgtgctct actatcgtcc gttgcgtaat ctgctacctg
    40261 gcagcgcatt gcgccgttcc gaaacccata ttgcccggca aatcttcagt tcgctaacgc
    40321 gcataaatga ggaaaatggg gaactggaag cagacatcgc ccaccactgg cagcaaatat
    40381 caccgcttca ctggcgtttc tttttgcgtc caggagtcca ttttcatcat ggtcgtgaac
    40441 tggaaatgga cgacgtgatc gcctctttaa aacgaatcaa tacgctgccg ctctattcgc
    40501 atattgcgga cattgtgtcg ccgacgccct ggacgctgga tatccatctc acgcaaccgg
    40561 accgctggtt accgttactg ctggggcaag ttccggcgat gatcctgccg cgcgaatggg
    40621 aaaccctcag taactttgcc agccatccca tcggcaccgg tccgtatgcg gtgatccgca
    40681 acaccaccaa tcaactgaaa attcaggcat tcgatgactt cttcggttac cgggcattaa
    40741 tcgatgaagt taacgtctgg gttctgccgg aaattgccga cgagccagct ggaggtctga
    40801 tgctaaaagg tccacagggt gaggaaaaag agattgaaag ccgcctggag gaaggttgct
    40861 actatttact attcgacagc cgcacccatc gcggagcgaa tcagcaagtc agggactggg
    40921 taagctatgt gctttctcca actaatctgg tctatttcgc tgaggaacag taccagcaac
    40981 tgtggttccc ggcttatgga ctgctccccc gttggcacca tgcccgcacc ataaagagcg
    41041 aaaaaccggc tggcctggaa agcctcaccc tgacctttta tcaggatcac agtgagcatc
    41101 gggtgattgc cgggatcatg cagcagattc tggcaagtca ccaggtcacg ctggaaatca
    41161 aagagatcag ctacgatcag tggcatgaag gagagatcga gagcgatatc tggcttaata
    41221 gcgccaactt tacgctgccg ctggattttt cgctgttcgc gcacttgtgc gaggtgccgc
    41281 tgctccaaca ctgtattccg atcgactggc aagccgacgc cgcccgctgg cgcaatggcg
    41341 aaatgaacct ggcgaactgg tgccagcaac tggtcgccag taaagcaatg gtgccgctta
    41401 tccaccactg gctgatcatt cagggacaac gcagtatgcg cggcctgcgt atgaataccc
    41461 tcggctggtt cgattttaaa tcagcgtggt ttgcgccgcc ggatccatga ttgctggtag
    41521 ataacaaaat cattacacta acaccgttct caacggggtg ccacgcaaac gcgtgcgctg
    41581 agaaaatacc cgtcgaacct gatccggata acgccggcga agggatttga ggctccttct
    41641 caagtccttt gccactcttt tttgaggtgc aaagtgttaa aaaaatgtct tcccctgctg
    41701 ttgctgtgca cagcgcccgt tttcgctaaa cccgttctga ctgtttatac ctacgattcc
    41761 ttcgccgccg actgggggcc tggtccaaag atcaaaaaag cttttgaagc cgactgtaac
    41821 tgcgaactga aactggtggc gctggaagat ggcgtttcgc ttctcaaccg tctacggatg
    41881 gaaggcaaaa atagtaaagc cgatgtggtg ctggggctgg ataacaatct gttagacgcc
    41941 gccagtaaaa ccggactatt tgccaaaagc ggtgtggcag cggatgccgt taacgttccc
    42001 ggcggctgga ataatgacac tttcgtcccg tttgattacg gctatttcgc cttcgtctat
    42061 gacaagaaca aactgaaaaa cccgccgcaa agcctgaaag aattggttga gagcgatcaa
    42121 aactggcggg tgatttatca ggatccgcgc accagtacgc cggggctggg cctgctgttg
    42181 tggatgcaaa aagtctatgg cgatgacgcc ccacaagcct ggcaaaaact ggcgaagaaa
    42241 accgtcacgg tcaccaaagg ctggagcgaa gcctacggcc tgtttttaaa aggtgaaagc
    42301 gatctggtac tgagttacac cacctctccg gcttatcaca ttctcgaaga gaaaaaagat
    42361 aactacgccg ccgcgaactt tagcgaaggt cactatctgc aggtggaagt cgccgcccgc
    42421 accgctgcca gcaagcagcc ggagctggcg caaaaattcc tccagtttat ggtttctccg
    42481 gcttttcaga atgcgatccc aaccggtaac tggatgtatc cggtggcaaa tgtcacgctg
    42541 cctgccgggt ttgaacaatt gaccaaaccg gccaccacgc tggagttcac accagctgaa
    42601 gtggcggcac aacgtcaggc atggattagc ggatggcaac gcgccgtcag ccgttaattc
    42661 ccggctggtt aattccaggt gtaagcgccg ccacgctggt ggtagcggtt gcgctcgcgg
    42721 cgtttctcgc cctgtggtgg aacgcgccgc agggtaactg ggtggcagtc tggcaggaca
    42781 gctacctgtg gcatgtggtg cgcttctcct tctggcaggc gtttctctcg gcgctactct
    42841 ctgtcgtacc cgcgatattc ctcgcccgcg ccctctatcg caggcgcttt ccgggtcggc
    42901 tggcgctgtt gcgtctgtgc gcaatgacct tgatcctccc ggtgctggtt gctgttttcg
    42961 gcattcttag cgtctatggt cgccagggct ggctggcatc gctctgccaa tcgctcggtc
    43021 tggagtggac cttttcgccc tacggcctgc aaggtatttt gctggcgcac gtatttttta
    43081 atctgccgat ggcgagccgc ttattactcc aggcactgga aaacattccc gacgaacaac
    43141 gtcagcttgc cgcccagctt gggatgcgcg gctggcattt tttccgcttc gtcgaatggc
    43201 cgtggttacg gcgacaaatc ccgccggttg ctgcacttat ctttatgctc tgtttcgcca
    43261 gcttcgccac cgtgctatca ctgggcggcg gtccgcaggc gaccactatc gagctggcta
    43321 tttatcaggc gctgagttac gactacgatc ctgcccgcgc ggcgatgctg gcgctgatcc
    43381 agatggtgtg ttgccttggg ctggtactgt tgagtcagcg attgagtaag gccattgcgc
    43441 caggcaccac gctgctgcaa ggctggcgcg acccggacga tcgtctgcat agccgcattt
    43501 gcgacacggt gttaatagtg ctggcgctgc tgctgttgtt gccaccgttg ctggcggtga
    43561 tcgtcgatgg ggtaaatcgc cagttgccgg aagtgctggc acaaccggtg ctgtggcagg
    43621 cgctgtggac ctcgttgcgt attgcgctgg cggcaggtgt attgtgcgta gtgctgacca
    43681 tgatgctgct atggagcagt cgcgaacttc gggcgcggca gaaaatgctg gcgggtcagg
    43741 cgctggagat gagcggcatg ttgattctcg ccatgccggg gattgtgctg gctaccggct
    43801 tctttttact gctcaacaac actatcggcc tgcaacaatc tgctgacggc attgtgattt
    43861 tcaccaatgc gttaatggcg atcccttatg cgctgaaagt actggaaaac ccgatgcgcg
    43921 atatcaccgc ccgctacagt atgttgtgtc agtcgctggg cattgaaggc tggtcgcgct
    43981 taaaagtggt ggagctgcgc gccctgaaac gtccactggc gcaggcgctg gcctttgcct
    44041 gcgtgctgtc gattggtgat tttggcgtgg tggcgttgtt cggtaacgat gatttccgta
    44101 ccctgccgtt ttatctctac cagcaaattg gctcctatcg cagccaggac ggcgcggtca
    44161 ccgcgttaat tctgctgcta ctctgttttc tgctgtttac cgtgattgaa aaactaccgg
    44221 ggcgaaatgt taaaactgac tgatatcacc tggctttacc aacatttgcc gatgcgtttt
    44281 agcttaacgg tggaacgcgg cgagcaggtg gcgatcctcg ggccaagcgg cgcaggtaaa
    44341 agtaccctgc tgaatttgat tgccggtttt ctgacgccag ccaacggttc gctgactatc
    44401 gatggcgttg atcacaccac gacgccgccg tcacgccgtc cggtgtcgat gctgtttcag
    44461 gagaacaacc tgttcagcca cctgacggtc gcgcagaaca tcgggctggg gcttaatcca
    44521 ggattgaagc tgaacgcggc acagcaggag aaaatgcacg ctatcgcccg tcagatgggg
    44581 attgataatt taatggcgcg gttaccgggc gagctttccg gcggccagcg acagcgcgtg
    44641 gcgttagcgc gttgtctggt gcgcgaacag ccgattttat tgctcgatga accgttctct
    44701 gcgctcgatc cggcgttacg tcaggagatg ctgacgctgg tgagcacgag ctgccagcag
    44761 caaaaaatga cgctattgat ggtgtcgcac agtgtggaag atgcggcgcg gatcgccaca
    44821 cgctcggtgg tggtcgccga cgggcgcatc gcctggcagg gtaagactga agaattgttg
    44881 agcggtaagg cgagtgcttc ggcaatattg gggattacgg gttagtatgc actgtcagat
    44941 gcggcgtgaa caccttatcc gacctacgga cagtgcgttt tgtaggcctg ataagacgcg
    45001 gtcagcgtcg catcaggcaa cccgcacaag acaatcccct aaaccccaac cactttacgc
    45061 aaaatatcga tatacaccgg catcaacggc tggcgaatta acaccaccag cgccaccacg
    45121 ccgatggcag aaatcaacgg cgtcagccac aacaaacggc cgcgcgacaa ataatgactt
    45181 aaacgatcgg ttgctttacc gctgcgccat aaccgccagc acagccagcc accaacccac
    45241 aaaaataccg ccgtcgccag cagcaaccat ttaaactcgc cgctctgcat tccggctgga
    45301 atatcgatcg ccgcgcccgc cagaatccca ggcaggaagt aaaacggtgg ccacagcagg
    45361 cagccgataa tattcggcgt aatgaatttt gccaccggca gatccagcat tcccgccacc
    45421 attggcacca gcggacgcgt cgggccaaca aagcgaccga ccagaatggt gaacatgctg
    45481 tgttgatgca acgcatgttc agttttatcg agtaatgctt tgtttttctt cagaaatgac
    45541 cagcgatgca acggcttttt aaaacgccag cccagccaga aggagatcca gtcgcccagc
    45601 agacaaccga caatccctgc cagccaggcg tgccagaaac ttaactcgcc gctgccaatc
    45661 agcgctccca gccccgccat cagcaccgta ccgggtagaa tcaaaccgac cagcgccagc
    45721 gactccagaa aagccaccaa caccaccgcc atcaatgaat acacggtaga ttgggtaata
    45781 aagtgttcca gcaatgcttg cataatgtgc ctgtcaaatg gacgaagcag ggattctgca
    45841 aaccctatgc tactccgtca agccgtcaat tgtctgattc gttaccaatt atgacaactt
    45901 gacggctaca tcattcactt tttcttcaca accggcacgg aactcgctcg ggctggcccc
    45961 ggtgcatttt ttaaataccc gcgagaaata gagttgatcg tcaaaaccaa cattgcgacc
    46021 gacggtggcg ataggcatcc gggtggtgct caaaagcagc ttcgcctggc tgatacgttg
    46081 gtcctcgcgc cagcttaaga cgctaatccc taactgctgg cggaaaagat gtgacagacg
    46141 cgacggcgac aagcaaacat gctgtgcgac gctggcgata tcaaaatcgc tgtctgccag
    46201 gtgatcgctg atgtactgac aagcctcgcg tacccgatta tccatcggtg gatggagcga
    46261 ctcgttaatc gcttccatgc gccgcagtaa caattgctca agcagattta tcgccagcag
    46321 ctccgaatag cgcccttccc cttgcccggc gttaatgatt tgcccaaaca ggtcgctgaa
    46381 atgcggctgg tgcgcttcat ccgggcgaaa gaaacccgta ttggcaaata ttgacggcca
    46441 gttaagccat tcatgccagt aggcgcgcgg acgaaagtaa acccactggt gataccattc
    46501 gcgagcctcc ggatgacgac cgtagtgatg aatctctcct ggcgggaaca gcaaaatatc
    46561 acccggtcgg caaacaaatt ctcgtccctg atttttcacc accccctgac cgcgaatggt
    46621 gagattgaga atataacctt tcattcccag cggtcggtcg ataaaaaaat cgagataacc
    46681 gttggcctca atcggcgtta aacccgccac cagatgggca ttaaacgagt atcccggcag
    46741 caggggatca ttttgcgctt cagccatact tttcatactc ccgccattca gagaagaaac
    46801 caattgtcca tattgcatca gacattgccg tcactgcgtc ttttactggc tcttctcgct
    46861 aacccaaccg gtaaccccgc ttattaaaag cattctgtaa caaagcggga ccaaagccat
    46921 gacaaaaacg cgtaacaaaa gtgtctataa tcacggcaga aaagtccaca ttgattattt
    46981 gcacggcgtc acactttgct atgccatagc atttttatcc ataagattag cggatcctac
    47041 ctgacgcttt ttatcgcaac tctctactgt ttctccatac ccgttttttt ggatggagtg
    47101 aaacgatggc gattgcaatt ggcctcgatt ttggcagtga ttctgtgcga gctttggcgg
    47161 tggactgcgc cagcggtgaa gagatcgcca ccagcgtaga gtggtatccc cgttggcaaa
    47221 aagggcaatt ttgtgatgcc ccgaataacc agttccgtca tcatccgcgt gactacattg
    47281 agtcaatgga agcggcactg aaaaccgtgc ttgcagagct tagcgtcgaa cagcgcgcag
    47341 ctgtggtcgg gattggcgtt gacagtaccg gctcgacgcc cgcaccgatt gatgccgacg
    47401 gtaacgtgct ggcgctgcgc ccggagtttg ccgaaaaccc aaacgcgatg ttcgtattgt
    47461 ggaaagacca cactgcggtt gaagaagcgg aagagattac ccgtttgtgc cacgcgccgg
    47521 gcaacgttga ctactcccgc tacattggtg gtatttattc cagcgaatgg ttctgggcaa
    47581 aaatcctgca tgtgactcgc caggacagcg ccgtggcgca atctgccgca tcgtggattg
    47641 agctgtgcga ctgggtgcca gctctgcttt ccggtaccac ccgcccgcag gatattcgtc
    47701 gcggacgttg cagcgccggg cataaatctc tgtggcacga aagctggggc ggcttgccgc
    47761 cagccagttt ctttgatgag ctggacccga tcctcaatcg ccatttgcct tccccgctgt
    47821 tcactgacac ctggactgcc gatattccgg tgggcacctt atgcccggaa tgggcgcagc
    47881 gtctcggcct gcctgaaagc gtggtgattt ccggcggcgc gtttgactgc catatgggcg
    47941 cagttggcgc aggcgcacag cctaacgcac tggtaaaagt tatcggtact tccacctgcg
    48001 acattctgat tgccgacaaa cagagcgttg gcgagcgggc agttaaaggt atttgcggtc
    48061 aggttgatgg cagcgtggta cctggattta tcggtctgga agcaggccaa tcggcgtttg
    48121 gtgatatcta cgcctggttt ggtcgcgtac tcggctggcc gctggaacag cttgccgccc
    48181 agcatccgga actgaaagcg caaatcaacg ccagccagaa acaactgctt ccggcgctga
    48241 ccgaagcatg ggccaaaaat ccgtctctgg atcacctgcc ggtggtgctc gactggttta
    48301 acggccgccg cacaccgaac gctaaccaac gcctgaaagg ggtgattacc gatcttaacc
    48361 tcgctaccga cgctccgctg ctgtttggcg gtttgattgc tgccaccgcc tttggcgcac
    48421 gcgcaatcat ggagtgcttt accgatcagg ggatcgccgt caataacgtg atggcgctgg
    48481 gcggcatcgc gcggaaaaac caggtcatta tgcaggcctg ctgcgacgtg ctgaatcgcc
    48541 cgctgcaaat tgttgcctct gaccagtgct gtgcgctcgg tgcggcgatt tttgctgccg
    48601 tcgccgcgaa agtgcacgca gacatcccat cagcccagca aaaaatggcc agtgcggtag
    48661 agaaaaccct gcaaccgcgc agcgaacagg cacaacgctt tgaacagctt tatcgccgct
    48721 atcagcaatg ggcgatgagc gccgaacaac actatcttcc aacttccgcc ccggcacagg
    48781 ctgcccaggc cgttccgact ctataaggac acgataatga cgatttttga taattatgaa
    48841 gtgtggtttg tcattggcag ccagcatctg tatggcccgg aaaccctgcg tcaggtcacc
    48901 caacatgccg agcacgttgt taatgcgctg aatacggaag cgaaactgcc ctgcaaactg
    48961 gtgttgaaac cgctgggcac cacgccggat gaaatcaccg ctatttgccg cgacgcgaat
    49021 tacgacgatc gttgcgctgg tctggtggtg tggctgcaca ccttctcccc ggccaaaatg
    49081 tggatcaacg gcctgaccat gctcaacaaa ccgttgctgc aattccacac ccagtttaac
    49141 gcggcgctgc cgtgggacag tatcgatatg gactttatga acctgaacca gactgcacat
    49201 ggcggtcgcg agttcggctt cattggcgcg cgtatgcgtc agcaacatgc cgtggttacc
    49261 ggtcactggc aggataaaca agcccatgag cgtatcggct cctggatgcg tcaggcggtc
    49321 tctaaacagg atacccgtca tctgaaagtc tgccgttttg gcgataacat gcgtgaagta
    49381 gcggtcaccg atggtgataa agttgccgca cagatcaagt tcggtttctc cgtcaatacc
    49441 tgggcggttg gcgatctggt gcaggtggtg aactccatca gcgacggcga tgttaacgcg
    49501 ctggtcgatg agtacgaaag ctgctacacc atgacgcctg ccacacaaat ccacggcgaa
    49561 aaacgacaga acgtgctaga agcggcgcgt attgagctgg ggatgaagcg tttcctggaa
    49621 caaggtggct tccacgcgtt caccaccacc tttgaagatt tgcacggtct gaaacagctt
    49681 ccaggtctgg ccgtacagcg tctgatgcag cagggttacg gctttgcggg cgaaggcgac
    49741 tggaaaaccg ccgccctgct tcgcatcatg aaggtgatgt caaccggtct gcagggcggc
    49801 acctccttta tggaggacta cacctatcac ttcgagaaag gtaatgacct ggtgctcggc
    49861 tcccatatgc tggaagtctg cccgtcgatt gccgtagaag agaaaccgat cctcgacgtt
    49921 cagcatctcg gtattggtgg taaggacgat cctgcccgac tgatcttcaa tacccaaacc
    49981 ggtccagcga ttgtcgccag cctgattgat ctcggcgatc gttaccgtct gctggttaac
    50041 tgtatcgaca cggtgaaaac accgcactcc ctgctgaaac tgccggtggc gaatgcgctg
    50101 tggaaagcgc aaccggatct gccaactgct tccgaagcgt ggatcctcgc tggtggcgcg
    50161 caccataccg tcttcagcca tgcgctgaac ctcaacgata tgcgtcagtt cgccgagatg
    50221 cacgacattg aaatcacggt gattgataac gacacccgcc tgccagcgtt taaagacgca
    50281 ctgcgctgga acgaagtgta ttacggattt cgtcgctaag tagccacatc aggtatgtaa
    50341 cgcctgatgc gacgctgacg cgtcttatct ggcctacacg ctgcgatttt gtaggccgga
    50401 taagcaaagc gcatccggca ttcaacgcct gatgcgacgc tggcgcgtct tatcaggcct
    50461 acgcgctgcg attttgtaga ccggataagc gaagcgcatc cggcacgaag gagtcaacat
    50521 gttagaagat ctcaaacgcc aggtattaga agccaacctg gcgctgccaa aacacaacct
    50581 ggtcacgctc acatggggca acgtcagcgc cgttgatcgc gagcgcggcg tctttgtgat
    50641 caaaccttcc ggcgtcgatt acagcgtcat gaccgctgac gatatggtcg tggttagcat
    50701 cgaaaccggt gaagtggttg aaggtacgaa aaagccctcc tccgacacgc caactcaccg
    50761 gctgctctat caggcattcc cctccattgg cggcattgtg catacgcact cgcgccacgc
    50821 caccatctgg gcgcagtcgg gtcagtcgat tccagcaacc ggcaccaccc acgctgacta
    50881 tttctacggc accattccct gcacccgcaa aatgaccgac gcagaaatca acggcgaata
    50941 tgagtgggaa accggtaacg tcatcgtaga aacctttgaa aaacagggta tcgatgcagc
    51001 gcaaatgccc ggcgttctgg tccattccca cggcccgttt gcatggggca aaaatgccga
    51061 agatgcggtg cataacgcca tcgtgctgga agaggtcgct tatatggaga tattctgccg
    51121 tcagttagcg ccgcagttac cggatatgca gcaaacgctg ctggataaac actatctgcg
    51181 taagcatggc gcgaaggcat attacgggca gtaatgactg tataaaacca cagccaatca
    51241 aacgaaacca ggctatactc aagcctggtt ttttgatgga ttttcagcgt ggcgcaggca
    51301 ggttttatct taacccgaca ctggcgggac accccgcaag ggacagaagt ctccttctgg
    51361 ctggcgacgg acaacgggcc gttgcaggtt acgcttgcac cgcaagagtc cgtggcgttt
    51421 attcccgccg atcaggttcc ccgcgctcag catattttgc agggtgaaca aggctttcgc
    51481 ctgacaccgc tggcgttaaa ggattttcac cgccagccgg tgtatggcct ttactgtcgc
    51541 gcccatcgcc aattgatgaa ttacgaaaag cgcctgcgtg aaggtggcgt taccgtctac
    51601 gaggccgatg tgcgcccgcc agaacgctat ctgatggagc ggtttatcac ctcaccggtg
    51661 tgggtcgagg gtgatatgca caatggcact atcgttaatg cccgtctgaa accgcatccc
    51721 gactatcgtc cgccgctcaa gtgggtttct atagatattg aaaccacccg ccacggtgag
    51781 ctgtactgca tcggcctgga aggctgcggg cagcgcatcg tttatatgct ggggccggag
    51841 aatggcgacg cctcctcgct tgatttcgaa ctggaatacg tcgccagccg cccgcagttg
    51901 ctggaaaaac tcaacgcctg gtttgccaac tacgatcctg atgtgatcat cggttggaac
    51961 gtggtgcagt tcgatctgcg aatgctgcaa aaacatgccg agcgttaccg tcttccgctg
    52021 cgtcttgggc gcgataatag cgagctggag tggcgcgagc acggctttaa aaacggcgtc
    52081 ttttttgccc aggctaaagg tcggctaatt atcgacggta tcgaggcgct gaaatccgcg
    52141 ttctggaatt tctcttcatt ctcgctggaa actgtcgctc aggagctatt aggcgaagga
    52201 aaatctatcg ataacccgtg ggatcgaatg gacgaaattg accgccgttt cgccgaagat
    52261 aaacctgcgc tggcaactta taacctgaaa gattgcgagc tggtgacgca gatcttccac
    52321 aaaactgaaa tcatgccatt tttactcgaa cgggcaacgg tgaacggcct gccggtggac
    52381 cgacacggcg gttcggtggc ggcatttggt catctctatt ttccgcgaat gcatcgcgct
    52441 ggttatgtcg cgcctaatct cggcgaagtg ccgccgcacg ccagccctgg cggctacgtg
    52501 atggattcac ggccaggact ttatgattca gtgctggtgc tggactataa aagcctgtac
    52561 ccgtcgatca tccgcacctt tctgattgat cccgtcgggc tggtggaagg catggcgcag
    52621 cctgatccag agcacagtac cgaaggtttt ctcgatgcct ggttctcgcg agaaaaacat
    52681 tgcctgccgg agattgtgac taacatctgg cacgggcgcg atgaagccaa acgccagggt
    52741 aacaaaccgc tgtcgcaggc gctgaaaatc atcatgaatg ccttttatgg cgtgctcggc
    52801 accaccgcct gccgcttctt cgatccgcgg ctggcatcgt cgatcaccat gcgtggtcat
    52861 cagatcatgc ggcaaaccaa agcgttgatt gaagcacagg gctacgacgt tatctacggc
    52921 gataccgact caacgtttgt ctggctgaaa ggcgcacatt cggaagaaga agcggcgaaa
    52981 atcggtcgtg cactggtgca gcacgttaac gcctggtggg cggaaacgct gcaaaaacaa
    53041 cggctgacca gcgcattaga actggagtat gaaacccatt tctgccgttt tctgatacca
    53101 accattcgcg gagccgatac cggcagtaaa aagcgctacg ccgggctgat tcaggagggc
    53161 gataaacagc ggatggtgtt taaagggctg gaaaccgtgc gcaccgactg gacgccgctg
    53221 gcccagcagt ttcagcagga gctatacctg cgcatcttcc gcaacgagcc atatcaggaa
    53281 tatgtacgcg aaaccatcga caaactgatg gcgggtgaac tggatgcgcg actggtttac
    53341 cgtaaacgcc ttcgccgtcc gctgagcgag tatcagcgta atgtgccgcc tcatgtacgc
    53401 gccgctcgcc ttgccgatga agaaaaccaa aagcgtggtc gccccttgca atatcagaat
    53461 cgcggcacca ttaagtacgt atggaccacc aacggcccgg agccgctgga ctaccaacgt
    53521 tcaccactgg attacgaaca ctatctgacc cgccagctac aacccgtggc ggagggaata
    53581 ctccctttta ttgaggataa ttttgctaca cttatgaccg ggcaacttgg gctattttga
    53641 gcaaaaaaag agttcgccag ataccatttt gatgcgtgac gaatgctttg ccatccagta
    53701 ccatagcgcc ctttccattc ctggacctga ataacaccac tacctcataa gcacggtagc
    53761 gggtggttat tgcctgcaat taaagatata gagccgaaca catatgcctt ttacacttgg
    53821 tcaacgctgg atcagcgata cagaaagcga attgggactt ggaaccgttg tcgcggtgga
    53881 tgcgcgaact gtcactttac ttttcccatc tactggtgaa aaccgtctgt acgcacgcag
    53941 tgattccccc gtgacccgcg tgatgttcaa ccctggtgat accattacca gccatgacgg
    54001 ctggcagatg caagtcgaag aagtaaaaga agaaaatggc ttgctgacct atatcggtac
    54061 tcgcctggat actgaagagt ccggcgtagc cctgcgtgaa gttttccttg atagcaaact
    54121 ggtgttcagc aaaccgcagg accgcctgtt tgccgggcag attgaccgta tggaccgctt
    54181 tgcgctgcgt tatcgcgcgc gtaagtattc cagcgaacag ttccgtatgc cgtacagcgg
    54241 cctgcgcggt cagcgtacca gcctgatccc gcaccagctc aacatcgctc atgatgttgg
    54301 ccgccgccac gcgccgcgcg tcctgctggc tgacgaagtg ggtttaggga aaaccattga
    54361 agccgggatg atcctgcatc agcaactgct ctctggcgct gctgaacgtg tgctgattat
    54421 cgtcccggaa accttacagc atcagtggct ggtagaaatg ctgcgccgtt tcaacctgcg
    54481 ctttgctctg tttgatgatg agcgttatgc cgaagctcag cacgatgctt acaacccgtt
    54541 tgacaccgaa cagctggtga tttgctcgct ggattttgcc cgtcgtagca aacagcgcct
    54601 ggaacatctc tgtgaagccg aatgggacct gctggtggtc gatgaagcgc atcacctggt
    54661 gtggagcgaa gatgcgccaa gccgtgaata tcaggccatt gaacaactgg cagagcacgt
    54721 gccgggcgtt ctgctgctga ccgcgacccc ggaacagctg gggatggaaa gccacttcgc
    54781 ccgtctgcgt ctgctggacc cgaaccgttt ccacgatttt gcgcagttcg ttgaagagca
    54841 gaaaaattat cgtccggttg cggacgccgt tgccatgctg ctggcaggta acaaactgag
    54901 caatgacgaa ctgaacatgc tcggcgagat gatcggcgag caggatatcg agccgctgtt
    54961 gcaggcagca aacagcgaca gcgaagatgc ccagagcgcc cgtcaggagc tggtttcgat
    55021 gctgatggat cgccacggca ccagccgcgt gctgttccgt aacacgcgta acggtgtgaa
    55081 aggattcccg aaacgcgagc tgcacaccat taagctgccg ctaccgacgc agtatcagac
    55141 ggctattaaa gtctccggca ttatgggcgc acgtaaaagt gcggaagatc gtgctcgcga
    55201 tatgctctac ccggagcgta tttatcagga atttgaaggt gataacgcca cctggtggaa
    55261 cttcgatccg cgcgttgagt ggctgatggg ctacctgacc agccatcgct ctcaaaaagt
    55321 gctggtgatc tgcgccaaag ctgccactgc gctgcaactg gagcaggtac tgcgcgaacg
    55381 tgaaggtatt cgcgctgcgg tgttccacga aggtatgtcg attatcgaac gtgaccgcgc
    55441 tgccgcctgg tttgccgaag aagacaccgg cgcacaggta ctgctgtgct cagaaatcgg
    55501 ttctgaagga cgtaacttcc agttcgccag ccacatggtg atgtttgacc tgccattcaa
    55561 cccggatcta ctggagcagc gtattggtcg tctggatcgt atcggccagg cgcacgatat
    55621 tcagatccat gtgccttatc tggagaaaac cgctcagtcg gtgctggtgc gctggtatca
    55681 cgaaggtctg gatgcatttg agcacacctg cccgaccgga cgcactattt acgatagcgt
    55741 atacaacgat ctgattaact atctggcttc accggatcaa accgaaggct ttgacgatct
    55801 gatcaaaaac tgccgcgagc aacatgaagc gctgaaagca cagctggaac agggtcgtga
    55861 ccgcctgctg gaaatccact ccaacggtgg cgaaaaagcc caggcactgg cagaaagcat
    55921 tgaagagcag gatgacgata ccaacctgat cgccttcgcc atgaacctgc tcgatattat
    55981 cggtatcaat caggacgatc gcggcgacaa catgatcgtg ctgacgccgt ccgatcatat
    56041 gctggtgccg gacttccctg gcctgtcgga agatggcatc accatcacct ttgatcgtga
    56101 agtggcgctg gcgcgtgaag atgcacagtt tattacctgg gagcatccgc tgatccgcaa
    56161 cggtctggat ctgatccttt ctggcgatac cggtagcagc acgatttcac tgttaaaaaa
    56221 caaagcgttg ccggtaggta cgctgttggt ggaactgatt tatgtggttg aagcccaggc
    56281 tccgaagcag ttgcagctca accgcttcct gccaccgacg ccggtacgta tgctgctgga
    56341 taaaaacggc aacaacctgg cggcgcaggt agagtttgaa acctttaacc gccagcttaa
    56401 cgcggttaac cgtcacaccg gcagcaaact ggttaacgcc gtgcagcagg atgttcacgc
    56461 tatccttcaa ctgggtgaag cgcagatcga gaaatctgcc cgtgcattga ttgatgcagc
    56521 gcgtaacgaa gccgacgaaa aactgtctgc cgagctgtct cgtctggaag ctctgcgtgc
    56581 agtgaacccg aacattcgtg acgacgaact gaccgccatt gagagcaacc gtcagcaggt
    56641 aatggaaagc ctggatcagg caggttggcg tctggatgcc ctgcgtttga tcgttgtaac
    56701 gcatcagtaa cggagccgaa aatggggatg gaaaactaca atccaccgca ggaaccctgg
    56761 ttggttatcc tgtatcagga tgaccacatt atggtggtta acaagccgag cggtttgttg
    56821 tctgtgccgg ggcgtctgga agagcacaaa gacagcgtga tgacgcgcat tcagcgtgat
    56881 tatccgcagg cagaatcggt gcatcgtctg gatatggcta ccagcggcgt gattgtagtg
    56941 gcgctgacca aagccgcgga gcgggagtta aaacgccagt tccgcgagcg cgagccgaaa
    57001 aagcagtatg tggcccgcgt ctgggggcat ccatcccctg cggaaggtct ggtggatctg
    57061 ccgctgattt gcgactggcc aaaccgcccg aaacagaaag tctgttacga aacgggtaaa
    57121 cctgcgcaga cggaatatga agtggtggag tatgcggcgg ataacacggc aagagtggtg
    57181 ttaaaaccga ttactgggcg ttcgcatcaa ttgcgtgtgc atatgctggc gctggggcat
    57241 ccgattctcg gcgatcgttt ttatgcatca ccagaagcga gagcgatggc accgcgtttg
    57301 ttgctacatg cagagatgtt gacgattacc catccggcgt atggcaatag tatgacgttt
    57361 aaagcgccag cggattttta atagtcacgc tggcgcagtt cggtaggcgg ataaggcgtt
    57421 cacgccgaat ccggcaattg tgcgccgatt gcctgatgcg acgcgggccg cgtcttatca
    57481 ggcctacagt ttaaaactta tttaaaccct ttctgctgct ttatcagctc atatgcctgc
    57541 tgaatttcct gcgctttctg cttcgccatc tccatcatct caggcggcaa acctttcgcc
    57601 accagcttat cgggatggtg ttcattcatc agcttacggt aggctcgttt aatggtggtc
    57661 gcatcatccg tcggcttcac acccagcaca ttacaggcat cttccagcgt cgggccacgc
    57721 tgcgcttgct gccagttacc accgccagat tgctgctgat aaccgccgcc aaactgtgca
    57781 ccgccctgca tcatgcgcaa aaactggtca aactgggcgc gggagatccc taattcttct
    57841 gcaatgacat acagcaccga ccgttcattc gggtgcagtg aaccatcagc aaacgccgcc
    57901 tgaatctgga tctccagaaa catacgaatt aagtcaaaac gaccaaagca gacactgcga
    57961 aactggcgca tcttttcgcg cagcgggtaa ttgtctgatt ttcccacccg gaacgcgttt
    58021 tgcgccgcag tacgggaagc gccatgaagg ttcattaggt ccatcagctg gctggcgata
    58081 tgaatatcag cctccgtgac gcgacctttg gatttggtta aatgccccat cacttcaaaa
    58141 gtggtggcaa aaaacagcgc ctgacgctca cgctggttgg cgaaccacgc cattttacgg
    58201 ctacgggctt tatcaaacat atggccaatt aacaggccta acactacgcc ccaaaagccg
    58261 ccgcccatca gtaaggccac ggccacgcca atgatttttc cccaatactg catatattcc
    58321 ccaaatcgac acacggatat cagggctatc tcccacaata taaaggtgct tttaccgttt
    58381 tccggctgca gtcaattgtg ggacatcgcc tataatttgc attatcatac ctgtcattca
    58441 atgccgtgcc taacaccact gacgctattc ggacaggatt aacactagcg tagagatgac
    58501 gagtacgtta gtctctgacc gtttgtcacg cgcaacgtta ccgatgatgg aacaataaaa
    58561 tcaacgtatg aaaaaacgta tccccactct cctggccacc atgattgcca ccgcccttta
    58621 tagtcaacag ggactggcag ccgacctcgc ctcacagtgc atgttgggcg tgccaagcta
    58681 tgaccgtcct ctggtacagg gcgataccaa tgacttaccc gtgactatca atgctgacca
    58741 cgcgaaaggg gactacccgg atgacgccgt gtttactggc agcgtggata tcatgcaggg
    58801 taacagccgt ctgcaggccg acgaagtgcc gctccatcaa aaagaggcac caggacaacc
    58861 ggagccggta cgaaccgttg atgcgctcgg taatgtccat tacgacgata accaggtgat
    58921 cctcaaaggg ccgaaaggct gggcgaatct gaacaccaaa gataccaacg tctgggaagg
    58981 tgattaccag atggtgggtc gccagggccg cggtaaagcg gacctgatga aacaacgtgg
    59041 tgaaaaccgc tataccattc tggataacgg tagctttacc tcctgtctgc cgggttctga
    59101 cacctggagc gtggtaggta gcgaaattat tcatgaccgc gaagaacaag ttgcggagat
    59161 ctggaacgcc cgctttaagg tgggtccagt accgatcttt tatagcccct atttgcagtt
    59221 gccggtgggt gacaaacgtc gctctggttt cttgatcccg aacgccaagt acaccaccac
    59281 caactacttt gagttctacc tgccatatta ctggaacatc gcgccaaata tggatgccac
    59341 catcacgccg cattatatgc atcgtcgtgg caacatcatg tgggagaacg aattccgcta
    59401 cctctcccag gcgggcgctg gcttgatgga actggactat ctgccttcag ataaagtcta
    59461 tgaagatgaa cacccgaacg atgacagttc acgtcgttgg ttgttctact ggcaacactc
    59521 cggggtcatg gatcaagtgt ggcgtttcaa cgtcgactac accaaggtca gcgatcctag
    59581 ctacttcaat gatttcgata acaagtacgg ttccagtact gacggctacg caacgcaaaa
    59641 attcagcgtt ggctatgcgg tgcaaaactt caatgccacc gtttcaacca agcagttcca
    59701 ggtctttagc gagcagaaca ccagtagcta ctcggcagag ccgcagttag acgttaacta
    59761 ctaccagaat gatgttggtc cgtttgatac gcgtatttac ggccaggcag tgcactttgt
    59821 taacaccaga gacgacatgc ctgaagcaac ccgtgttcac ctggaaccga ccatcaattt
    59881 gccgctctct aataactggg gcagcatcaa taccgaagcg aagttgctgg caacccatta
    59941 tcagcaaacc aatcttgact ggtataactc cagaaacacg accaagctgg acgaatccgt
    60001 taaccgcgtt atgccgcaat tcaaagttga cggcaaaatg gtctttgaac gcgatatgga
    60061 aatgctggct ccgggttata cccaaacgct ggaaccgcgc gcgcagtatt tgtacgtgcc
    60121 gtatcgcgat cagagcgaca tctataacta cgactcgtct ctactgcaat ctgactactc
    60181 tggcctgttc cgggaccgga cttacggcgg tcttgaccgt attgcctccg ctaaccaggt
    60241 gacgaccggt gtcacatctc gcatatatga tgatgctgcc gttgaacatt ttaatatttc
    60301 cgttggtcaa atctactatt tcacggagtc tcgcactggc gatgacaaca taacatggga
    60361 gaatgacgac aaaacgggct cactggtgtg ggcaggcgat acttactggc gtatctccga
    60421 gcgttgggga ttgcgtggcg ggattcagta cgatacacgt ctggataacg tagcgaccag
    60481 taactccagc attgaatacc gtcgggatga agaccgtctg gtacagctga attaccgtta
    60541 cgccagcccg gaatatattc aggctacgct gcctaagtac tattccactg ctgagcaata
    60601 taagaatggt atttcgcagg taggtgctgt cgccagctgg ccaattgccg atcgttggtc
    60661 cattgttggg gcctactact acgacaccaa tgcgaacaag caagccgact ctatgttagg
    60721 tgtgcaatac agctcctgct gctatgcaat tcgcgtcggt tacgagcgga agctgaacgg
    60781 ttgggataac gataaacaac atgcggtata tgacaacgca atcggcttta acatcgaact
    60841 tcgcggcctg agctccaact acggtctgga tacgcaagag atgctgcgtt cgaacattct
    60901 gccgtatcaa aacactttgt gatttgttga tttaccacgt aatccgcagt gcggttaatt
    60961 gaaatggaaa aagtatgaag aactggaaaa cgctgcttct cggtatcgcc atgatcgcga
    61021 ataccagttt cgctgccccc caggtagtcg ataaagtcgc agccgtcgtc aataacggcg
    61081 tcgtgctgga aagcgacgtt gatggattaa tgcagtcggt aaaactgaac gctgcgcagg
    61141 caaggcagca gcttcctgat gacgcgacgc tgcgccacca aatcatggaa cgtttgatca
    61201 tggatcaaat catcctgcag atggggcaga aaatgggagt gaaaatctcc gatgagcagc
    61261 tggatcaggc gattgctaac atcgcgaaac agaacaacat gacgctggat cagatgcgca
    61321 gccgtctggc ttacgatggt ctgaactaca acacctatcg taaccagatc cgcaaagaga
    61381 tgattatctc tgaagtgcgt aacaacgagg tgcgtcgtcg catcaccatc ctgccgcagg
    61441 aagtcgaatc cctggcgcag caggtgggta accaaaacga cgccagcact gagctgaacc
    61501 tgagccacat cctgatcccg ctgccggaaa acccgacttc tgatcaggtg aacgaagcgg
    61561 aaagccaggc gcgcgccatt gtcgatcagg tgcgtaacgg cgctgatttc ggtaagctgg
    61621 cgattgctca ttctgccgac cagcaggcgc tgaacggcgg ccagatgggc tggggccgta
    61681 ttcaggagtt gccgggtatc ttcgcccaga cattaagcac cgcgaagaaa ggcgacattg
    61741 ttggcccgat tcgttccggc gttggcttcc atattctgaa agttaacgac ctgcgcggcg
    61801 aaagcaaaaa tatctcggtg accgaagttc atgctcgcca tattctgctg aaaccgtcgc
    61861 cgatcatgac tgacgaacag gcccgtgtga aactggaaca gattgctgcc gatatcaaga
    61921 gtggtaaaac gacttttgct gccgcagcga aagagttctc tcaggatcca gactctgcta
    61981 accagggcgg tgatctcggc tgggctacac cagatatttt cgatccggcc ttccgtgacg
    62041 ccctgacccg cctgaacaaa ggtcaaatga gtgcaccggt tcactcttca ttcggctggc
    62101 atttaatcga actgctggat acccgtaatg tcgataaaac cgacgctgcg cagaaggatc
    62161 gtgcataccg catgctgatg aaccgtaagt tctcggaaga agcagcaagc tggatgcagg
    62221 aacaacgcgc cagcgcctac gttaaaatcc tgagcaacta atggttaaaa cccaacgtgt
    62281 tgtgatcact cccggcgagc ccgccgggat tggcccggac ttagttgtcc agcttgcaca
    62341 gcgtgagtgg ccggtcgaac tggttgtttg tgccgatgcc actctcctta ccgaccgggc
    62401 agcgatgctc ggtttgccgc tcaccctccg cccttattcc cccaactccc ctgcacaacc
    62461 gcaaactgcg ggcacattaa cgctacttcc tgtcgcgcta cgcgaatctg tcactgcggg
    62521 gcagttagcg attgaaaatg ggcattacgt ggtggagacg ctggcgcgag cgtgtgatgg
    62581 ctgtctgaac ggtgaatttg ctgcgctgat cacaggcccc gtgcataaag gcgtcattaa
    62641 cgacgcaggt attccgttta ctggtcatac cgagtttttc gaagagcgct cgcaggcgaa
    62701 aaaagtggtg atgatgctgg cgaccgaaga acttcgcgtg gcgctggcaa cgacgcattt
    62761 accgctgcgc gatatcgcag atgctatcac ccctgcactt ttgcacgaag tgattgctat
    62821 tttgcatcac gatttgcgta caaaatttgg tattgccgaa ccgcgcattc tggtctgcgg
    62881 gctgaatccg cacgcgggcg aaggcggtca tatgggtacg gaagagatag acaccattat
    62941 tccggtgctc gacgagctgc gggcgcaggg gatgaaactc aacgggccgc tgcctgccga
    63001 taccctgttt cagccgaaat atctcgataa cgccgacgcc gtgctggcga tgtaccacga
    63061 tcagggtctt cccgtgctaa aataccaggg cttcgggcgc ggtgtgaaca ttacgctggg
    63121 cctgcccttt attcgcacat cagtggacca cggcaccgcg cttgaactgg cgggacgtgg
    63181 cgaagccgat gtcggcagtt ttattacggc gcttaatctc gccatcaaaa tgattgttaa
    63241 cacccaatga ataatcgagt ccaccagggc cacttagccc gtaaacgctt cgggcaaaac
    63301 tttctcaacg atcagttcgt gatcgacagc attgtttctg ccattaaccc gcaaaagggc
    63361 caggcaatgg tcgaaatcgg ccccggtctg gcggcattga ccgagccggt cggcgaacgt
    63421 ctggaccagc tgacggtcat cgaacttgac cgcgatctgg cggcacgtct gcaaacgcat
    63481 ccattcttag gcccgaaact gacgatttat cagcaggatg cgatgacctt taactttggc
    63541 gaactggccg agaaaatggg tcagccgctg cgtgttttcg gcaacctgcc ttataacatc
    63601 tccacgccgt tgatgttcca tctgtttagc tatactgatg ccattgccga catgcacttt
    63661 atgttgcaaa aagaggtggt gaatcgtctg gttgcaggac cgaacagcaa agcgtatggt
    63721 cgattaagcg tcatggcgca atactattgc aacgtgatcc cggtactgga agttccgccg
    63781 tcagccttta caccaccacc caaagtggat tccgccgtcg tgcgcctggt tcctcatgca
    63841 acgatgcctc atccggttaa agatgttcgt gtgttgagcc gcatcaccac cgaagccttt
    63901 aaccagcgtc gtaaaaccat tcgtaacagc ctcggcaacc tgtttagcgt cgaggtgtta
    63961 acgggaatgg ggctcgaccc ggcgatgcga gcggaaaata tctctgtcgc gcaatattgc
    64021 cagatggcga actatctggc ggagaacgcg cctttgcagg agagttaacg atgatcaatt
    64081 cgccccgagt gtgtattcag gttcaaagcg tctacattga ggcacaatct tcacctgata
    64141 atgaacgtta cgtttttgct tataccgtaa ccatacgcaa tctggggcga gcgccagtgc
    64201 agttgttggg gcgttactgg ctgatcacca atggcaatgg ccgtgaaacc gaagtccagg
    64261 gcgaaggagt ggttggcgtc cagccactta tcgcgcctgg cgaagagtac cagtacacca
    64321 gcggtgcaat cattgaaacc ccgctgggca ccatgcaggg tcactacgaa atgatcgatg
    64381 aaaatggcgt ccctttcagc atcgacattc ccgtattccg actcgccgtt cccacactca
    64441 ttcattaaaa gaatatggcg acatacctta ttggcgacgt tcatggttgt tacgatgaac
    64501 tgatcgcatt gctgcataaa gtagaattta cccctgggaa agataccctc tggctgacgg
    64561 gcgatctggt cgcgcgcggc ccgggttcgc tggatgttct gcgctatgtg aaatccttag
    64621 gcgacagcgt acgtctggtg ctgggcaatc acgatctgca tctgctggcg gtatttgccg
    64681 ggatcagccg caataaaccg aaagatcgcc tgacaccgct gctggaagcg ccggatgccg
    64741 acgagctgct taactggctg cgtcgccagc ctttgctgca aatcgacgaa gagaaaaagt
    64801 tggtgatggc ccacgcaggg atcacgccgc agtgggatct acagaccgcc aaagagtgcg
    64861 cgcgcgatgt agaagcggtg ctatcgagtg actcctatcc cttctttctc gacgctatgt
    64921 acggcgatat gccaaataac tggtcaccgg aattgcgggg gctgggaaga ctgcgtttta
    64981 tcaccaacgc ctttacccgt atgcgttttt gcttcccgaa cggtcaactg gatatgtaca
    65041 gcaaagaatc gccggaagag gcccctgccc cactgaaacc gtggtttgcg attcctggcc
    65101 ctgtcgctga agaatacagc atcgcctttg gtcactgggc atcgctggag ggcaaaggta
    65161 cgccggaagg tatatacgcg ctggataccg gctgctgctg gggtggtaca ttaacctgcc
    65221 tgcgctggga agataaacag tattttgtcc agccgtcgaa ccggcataag gatttgggcg
    65281 aagcggcggc gtcttaaaca cagcctgata taggaaggcc ggataagacg cgaccggcgt
    65341 cgcatccggc actagccgta aattctatac aaaattaccg ccgctccaga atctcaaagc
    65401 aatagctgtg agagttctgc gcatcagcat cgtggaattc gctgaatacc gattcccagt
    65461 catccggctc gtaatccggg aaatgggtgt cgccttccac ttctgcgtcg atatgcgtca
    65521 gatacagttt ctgcgctttt ggcaggaact gctcataaac gcgaccgccg ccaatcacca
    65581 tgatttctgg tacgtcacca cacgccgcga tggcttcatc caccgacttc acccacgtta
    65641 cgcgatcgtc cgtacccggt tggctgctga ggataatatt tttgcgtcct ggcaacggac
    65701 gaccgattga ttcccaggta tggcggccca taatcacggg tttatttaag gtgttgcgtt
    65761 taaaccaggc gagatcggca ggcaggttcc acggcatggc gttttccatg ccgataacgc
    65821 gatctaccgc taacgccgca atcagactga tcattgagat ttcccgataa aaaaaattgt
    65881 cgccactata cgtaaagcgt aaaccgtcgt cgactggtgc gaggatgatg ttgaggaaaa
    65941 ttttatattc tgctggcgag tccacgctct ctccctggac tcgccgcatt acaatgaaac
    66001 aaaaacaaac agttagctgt aaagtatgat ttacgtcact ctttattagg atgagggttt
    66061 cgtttccggt tcatccgcca tgttgccggt atgtttacct tcttcggttc cctgccagcc
    66121 atgtcgttga attaatgaca gatgttcgcg gtcctcggta atgatctcac ttaacatcgc
    66181 gctggtgcgt ttatagaccg ccgcgcgggc tttggtgtcg ttctcaacca ttgccatctc
    66241 ttccaccatc tgaatattaa aacggcggaa cacatcggca cgttctcgcg cttcatacgg
    66301 ccccagacct aaactttcca gtgccagacg cccggttttc agcgcacctt cgaaggtttc
    66361 acgctccggc ttttcaacgc ctgcctgacg caaacgaatg tagtggtcga catcgcgggc
    66421 gcgggcaata atctgcaaat gcgggaagtg ttctttcacc atctctgtca gttgcaggtt
    66481 ggtttgcgga tcgtcgatgg cgttaatcag cacttccgct ttcgccgctc ccgcagattc
    66541 cagtaaatcc atccgcgtgg catcgccata aaacactttc ataccaaatt tacgcaaggt
    66601 ttcgatatgg tccggatcgt gatcgagcac caccattttc accccgctgg agagcagtaa
    66661 acgtccggtg atctgcccaa aacgaccgaa tccggcaatg attacccgcg gctgttcttc
    66721 gtcgatctca tcggcttcac gcgcctcttc agtagaagat tgctcaaggc gattgaggat
    66781 caccagcaga atcggcgttg ccgccatcga cagcgccacc gccagggtca gcgatttcgc
    66841 ccactccggc tccagcacat tcgccatctg cgccgcgcca aataccacaa aggcaaactc
    66901 actgccctgc cctaacaaca ccgcaaacca acgacgctgt ttatttggca cttgcaacgg
    66961 tcgggcaatc agccacagca tggcgatttt gatgatgagg aaaccgagca gcaaaatgac
    67021 aatgcgcaat gggttttcaa gcagcgtgcc aaagtctatc gacatgccaa caccgatgaa
    67081 aaacagcccc aacagcaaac ctttaaaggg ttcgatatcg ctctccagcg catgacggta
    67141 ttccgagctt gccagcagta cgcccgccag aaacgcgccc atcgccatcg acaagccgac
    67201 ctcttccagc agcaaaccaa agccaaacac gaggaataac gccacggcac taaacacttc
    67261 ccgcaagcca gagcgggcta caaaacgcag cgccggacgc gtgacatagc gccccagcaa
    67321 taccaccagc accagcgcac ccgccacttt taacgccgag agagcaaatg cgcccatcgt
    67381 cgtcgaggca ctgctcgttg ccagtagcgg aatcatcgcc accagcggga tcgccgcgat
    67441 atcctggaac agcagcaccg caaaggcact gcgacccatt tgcgtcacca tcagattgcg
    67501 ttcattcatc gcctgcatgg caatcgccgt agaggagagc gccagcgtca tgccgatcaa
    67561 ttccgcgacc tgccagcgca gcccaagtaa catgcagaac agccccagca ggccgccgca
    67621 aatcaccatc tgcaatgcgc caccgccgaa cactgccgca cgcagcttcc acagcctttg
    67681 tggatcgagt tcgaggccga taataaacag catcagcacc accccaatct aggcaaagtg
    67741 cagaatagat tcggcatcgg tcaccagtcg cagcccccac gggccaataa tgcagccggc
    67801 gatcaggtag ccaagtaccg atcccagacc aagacgtacc gcaatgggta caatcagcgc
    67861 tgccgaaccg agataaatca gcgcctgaat cagcgtatgg ctatccatga tgggcctcct
    67921 gccattccag cagacgttgc ttatagtgac gcgcctgccc ttcgagggtt tcgtcgtcac
    67981 aaataaaggt gcagtgcatg gcaaacggtg gcagccagtt cagcccgcag tagattgccg
    68041 tcgcctgtag cggctgcgac agcacatcaa agcccggatg cgcaccaatt tcaaaatggc
    68101 tttccccgcc gccggtcgtc accgcccaca gcaaatgttt gccatgcagc gccttgccgc
    68161 cgtgaccgta agcccagccg tgcgacaaaa ctttatcgat ccaaagttta agaagcggag
    68221 gaatgctgta ccactgcatc ggatgctgcc agacgatcag atcggcgcga gacagcgcct
    68281 cctgctcggc ggcaatatcg atattgaagt caggatagag ttgataaaga gagcgaattt
    68341 cgacgccttc cagcgtcctt gcctgttcaa gcatccgttt attcgcatgg gaatgatgcg
    68401 gatacggatg cgcataaatt ataagaatca taggtagccc gcgtgattac gcctttgttt
    68461 tcccacaaag tgtagtcata tattcacgcg gcttatagtc aataatattg attcagaaaa
    68521 gagagaaatc tgaacaattt accccattct ctgcccgcgg atcgtcatat tgctggtttg
    68581 cgccagtgac atccctcgat gtctccgggg caaacgctac ggaaatcaac aagccaaaca
    68641 gcgagatacc cgcccccatt agcatcgtgt tactgatacc gtaattattg ataaagatcg
    68701 gcagtgccca ggtcgaaaca atggtgccaa tacggcttaa ggacataatc acgcccacgg
    68761 cagaggcgcg gatatctgtc gggaagagtt cattaggata gagccactgc aaattacccg
    68821 gcccgccaga gaaaaaggca tacaccgcaa aggccatcac taccagccag atccccatat
    68881 ccgggatcag ccccaaaacc gccagcgcca gcgtcatcat ggcaaagctg ccaatcaaca
    68941 atggacgccg tccggcagtg tttaaccaca gcatcggcgg aatacagccg agcataaaga
    69001 acaggctaat caccacgttc cccagcgccg cgtttttgcc aacacccaat cccaacaaac
    69061 caacgatttg cgggccaaag gtgtaaatgg cgaacattgg gatcacctgg caggtccaga
    69121 tggcggcaac aaacagaaca aaaggaaaat ggcggcgatt aaacagatcg cgaaaacggg
    69181 tttgctgcgg ctgctcttca tcgaaagcca ccggttcgcc aaacagtttt atcatcatct
    69241 cttcgcactc ttttactcgc cctttgcgta ataaccagcg gggagattca ggcagttcga
    69301 atcgaccaat caaaatcaac aaacagggga tcgccgcgct acccagcatc cagcgccagc
    69361 cgccttccac atcataaagc cagtagccga ccagatcggc gcaggtcgcg ccgacatacc
    69421 acatggcggc gataaagctg atggaaaatg cccgctgacg ggtactggag aactcggtga
    69481 tcattgaggt ggcgatggga taatctgcac cgatgacaat gccgataagt acccgcatca
    69541 ccaacagttc gacgggggat gaaacaaaca tcgtcgccac cgatatcacg ccgatggcga
    69601 tgatatcaat gaggaacatt ttgcgccgtc cgactttatc ggaaatatag ccaaacagcg
    69661 atgtgccaac gaacagcccg gcgagcgttc ccgcgcccaa caagccaatc cagtcagcgt
    69721 ccagttttag cgccggagtc agttgctcca gcgccacgcc aatcattacc agtacataac
    69781 catccag
//
LOCUS       DAJVUN010000002        61093 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.002, whole genome shotgun sequence.
ACCESSION   DAJVUN010000002 DAJVUN010000000
VERSION     DAJVUN010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 61093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 61093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..61093
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.002"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..604)
                     /locus_tag="OQQ76_000064"
     CDS             complement(<1..604)
                     /locus_tag="OQQ76_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1705 domain-containing protein"
                     /protein_id="HCS1966694.1"
                     /translation="MTVFNKFARSFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFF
                     VLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDP
                     DEVVKMLGMYIPYLCAFAFLSLLFWVVIIKYDVSLPTKKVTGILLLIVISGSLFSACQ
                     FAYKDAKNKKTFSPYILASRFATYTPFFNLNYFALAAKKHQ"
     gene            complement(1063..1149)
                     /locus_tag="OQQ76_000065"
     tRNA            complement(1063..1149)
                     /locus_tag="OQQ76_000065"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1113..1115),aa:Leu,seq:gag)
     gene            complement(1164..1496)
                     /gene="secG"
                     /locus_tag="OQQ76_000066"
     CDS             complement(1164..1496)
                     /gene="secG"
                     /locus_tag="OQQ76_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HCS1966695.1"
                     /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG
                     SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA
                     KPTSDIPN"
     gene            complement(1724..3061)
                     /gene="glmM"
                     /locus_tag="OQQ76_000067"
     CDS             complement(1724..3061)
                     /gene="glmM"
                     /locus_tag="OQQ76_000067"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HCS1966696.1"
                     /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK
                     IIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS
                     HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE
                     FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG
                     ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL
                     RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD
                     KTTTGDGIVAGLQVLAAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK
                     AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV"
     gene            complement(3054..3902)
                     /gene="folP"
                     /locus_tag="OQQ76_000068"
     CDS             complement(3054..3902)
                     /gene="folP"
                     /locus_tag="OQQ76_000068"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312083.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HCS1966697.1"
                     /translation="MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHA
                     NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWLSVDTSKPEV
                     IRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE
                     VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGM
                     SRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAK
                     ENKRYE"
     gene            complement(3992..5926)
                     /gene="ftsH"
                     /locus_tag="OQQ76_000069"
     CDS             complement(3992..5926)
                     /gene="ftsH"
                     /locus_tag="OQQ76_000069"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HCS1966698.1"
                     /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND
                     QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI
                     FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA
                     KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG
                     SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN
                     QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH
                     MRRVPLAPDIDAAIIARGTPSFSGADLANLVNEAALFAARGNKRVVSMIEFEKAKDKI
                     MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP
                     EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG
                     FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD
                     NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP
                     VDEPRTPNPGNTMSEQLGDK"
     gene            complement(6026..6655)
                     /gene="rlmE"
                     /locus_tag="OQQ76_000070"
     CDS             complement(6026..6655)
                     /gene="rlmE"
                     /locus_tag="OQQ76_000070"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HCS1966699.1"
                     /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ
                     SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD
                     ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS
                     FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP"
     gene            6781..7074
                     /gene="yhbY"
                     /locus_tag="OQQ76_000071"
     CDS             6781..7074
                     /gene="yhbY"
                     /locus_tag="OQQ76_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HCS1966700.1"
                     /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH
                     ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR"
     gene            complement(7231..7707)
                     /gene="greA"
                     /locus_tag="OQQ76_000072"
     CDS             complement(7231..7707)
                     /gene="greA"
                     /locus_tag="OQQ76_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006178768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCS1966701.1"
                     /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE
                     QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL"
     gene            7955..9388
                     /gene="dacB"
                     /locus_tag="OQQ76_000073"
     CDS             7955..9388
                     /gene="dacB"
                     /locus_tag="OQQ76_000073"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HCS1966702.1"
                     /translation="MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVG
                     ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV
                     ARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
                     SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE
                     LDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR
                     QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD
                     AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL
                     AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV
                     EPADQRNRRIPLVRFESRLYKDIYQNN"
     gene            complement(9428..10600)
                     /gene="cgtA"
                     /locus_tag="OQQ76_000074"
     CDS             complement(9428..10600)
                     /gene="cgtA"
                     /locus_tag="OQQ76_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HCS1966703.1"
                     /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD
                     VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG
                     ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLAAK
                     PRWLVFNKIDLLDKAEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE
                     NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR"
     gene            complement(10616..11581)
                     /locus_tag="OQQ76_000075"
     CDS             complement(10616..11581)
                     /locus_tag="OQQ76_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012135318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1966704.1"
                     /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL
                     MASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ
                     VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTTLVEIFTKLTDYTWG
                     VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ
                     LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR
                     PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHTTVVSQPRAGE"
     gene            complement(11695..11952)
                     /gene="rpmA"
                     /locus_tag="OQQ76_000076"
     CDS             complement(11695..11952)
                     /gene="rpmA"
                     /locus_tag="OQQ76_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HCS1966705.1"
                     /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE"
     gene            complement(11973..12284)
                     /gene="rplU"
                     /locus_tag="OQQ76_000077"
     CDS             complement(11973..12284)
                     /gene="rplU"
                     /locus_tag="OQQ76_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HCS1966706.1"
                     /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG
                     EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS
                     A"
     gene            12543..13514
                     /gene="ispB"
                     /locus_tag="OQQ76_000078"
     CDS             12543..13514
                     /gene="ispB"
                     /locus_tag="OQQ76_000078"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HCS1966707.1"
                     /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG
                     KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA
                     FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE
                     ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA
                     DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN
                     ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR"
     gene            13741..14019
                     /gene="sfsB"
                     /locus_tag="OQQ76_000079"
     CDS             13741..14019
                     /gene="sfsB"
                     /locus_tag="OQQ76_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SfsB"
                     /protein_id="HCS1966708.1"
                     /translation="MESNFIDWHPPDIIAGLRKKGTSMAAESRRNGLSSSTLANALSR
                     PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK"
     gene            complement(14067..15326)
                     /gene="murA"
                     /locus_tag="OQQ76_000080"
     CDS             complement(14067..15326)
                     /gene="murA"
                     /locus_tag="OQQ76_000080"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HCS1966709.1"
                     /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV
                     PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA
                     RFGQGQVSLPGGCTIGARPVDLHISGLEQLDATIKLEEGYVKASVDGRLKGAHIVMDK
                     VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV
                     ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG
                     EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH
                     VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI
                     YHIDRGYERIEDKLRALGANIKRVKGE"
     gene            complement(15381..15635)
                     /gene="ibaG"
                     /locus_tag="OQQ76_000081"
     CDS             complement(15381..15635)
                     /gene="ibaG"
                     /locus_tag="OQQ76_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417657.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family iron metabolism protein IbaG"
                     /protein_id="HCS1966710.1"
                     /translation="MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVK
                     KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF"
     gene            complement(15795..16088)
                     /gene="mlaB"
                     /locus_tag="OQQ76_000082"
     CDS             complement(15795..16088)
                     /gene="mlaB"
                     /locus_tag="OQQ76_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HCS1966711.1"
                     /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL
                     SRVSRVDTGGLALLLHLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR"
     gene            complement(16088..16723)
                     /gene="mlaC"
                     /locus_tag="OQQ76_000083"
     CDS             complement(16088..16723)
                     /gene="mlaC"
                     /locus_tag="OQQ76_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HCS1966712.1"
                     /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN
                     EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK
                     QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN
                     WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK"
     gene            complement(16742..17293)
                     /gene="mlaD"
                     /locus_tag="OQQ76_000084"
     CDS             complement(16742..17293)
                     /gene="mlaD"
                     /locus_tag="OQQ76_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HCS1966713.1"
                     /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYA
                     TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR
                     TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK
                     NSGDAPAAAPGNNETTEPVGTTK"
     gene            complement(17298..18080)
                     /gene="mlaE"
                     /locus_tag="OQQ76_000085"
     CDS             complement(17298..18080)
                     /gene="mlaE"
                     /locus_tag="OQQ76_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014071945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HCS1966714.1"
                     /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL
                     VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV
                     VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRLWAGVISLPLLTV
                     IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL
                     FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN"
     gene            complement(18088..18897)
                     /gene="mlaF"
                     /locus_tag="OQQ76_000086"
     CDS             complement(18088..18897)
                     /gene="mlaF"
                     /locus_tag="OQQ76_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HCS1966715.1"
                     /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG
                     IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV
                     FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA
                     LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL
                     ADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS"
     gene            19107..20084
                     /locus_tag="OQQ76_000087"
     CDS             19107..20084
                     /locus_tag="OQQ76_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HCS1966716.1"
                     /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV
                     VSIGTSLPEIIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR
                     RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTR
                     EQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAI
                     GTSLPELATAIAGGRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDY
                     SVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE"
     gene            20098..21084
                     /gene="kdsD"
                     /locus_tag="OQQ76_000088"
     CDS             20098..21084
                     /gene="kdsD"
                     /locus_tag="OQQ76_000088"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase KdsD"
                     /protein_id="HCS1966717.1"
                     /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK
                     MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA
                     ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP
                     TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH
                     VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV
                     MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV"
     gene            21105..21671
                     /gene="kdsC"
                     /locus_tag="OQQ76_000089"
     CDS             21105..21671
                     /gene="kdsC"
                     /locus_tag="OQQ76_000089"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HCS1966718.1"
                     /translation="MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYM
                     GNNGEELKVFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK
                     LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA
                     GGRGAVREVCDLLLLAQGKLDEAKGQSI"
     gene            21668..22243
                     /gene="lptC"
                     /locus_tag="OQQ76_000090"
     CDS             21668..22243
                     /gene="lptC"
                     /locus_tag="OQQ76_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HCS1966719.1"
                     /translation="MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS
                     EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK
                     LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG
                     LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP"
     gene            22212..22769
                     /gene="lptA"
                     /locus_tag="OQQ76_000091"
     CDS             22212..22769
                     /gene="lptA"
                     /locus_tag="OQQ76_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide ABC transporter
                     substrate-binding protein LptA"
                     /protein_id="HCS1966720.1"
                     /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS
                     LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG
                     KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV
                     TTVLVPSQLQDKNNKGQTPAQKKGN"
     gene            22776..23501
                     /gene="lptB"
                     /locus_tag="OQQ76_000092"
     CDS             22776..23501
                     /gene="lptB"
                     /locus_tag="OQQ76_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HCS1966721.1"
                     /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT
                     TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV
                     LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH
                     GTPTEILQDEHVKRVYLGEDFRL"
     gene            23549..24982
                     /gene="rpoN"
                     /locus_tag="OQQ76_000093"
     CDS             23549..24982
                     /gene="rpoN"
                     /locus_tag="OQQ76_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HCS1966722.1"
                     /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN
                     PLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG
                     DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
                     ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL
                     IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV
                     LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE
                     SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
                     PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
                     IMVARRTVAKYRESLSIPPSNQRKQLV"
     gene            25005..25292
                     /gene="hpf"
                     /locus_tag="OQQ76_000094"
     CDS             25005..25292
                     /gene="hpf"
                     /locus_tag="OQQ76_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HCS1966723.1"
                     /translation="MQLNITGNHVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVE
                     KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH"
     gene            25410..25901
                     /gene="ptsN"
                     /locus_tag="OQQ76_000095"
     CDS             25410..25901
                     /gene="ptsN"
                     /locus_tag="OQQ76_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HCS1966724.1"
                     /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS
                     LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ
                     PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP
                     DEA"
     gene            25947..26801
                     /gene="rapZ"
                     /locus_tag="OQQ76_000096"
     CDS             25947..26801
                     /gene="rapZ"
                     /locus_tag="OQQ76_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HCS1966725.1"
                     /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL
                     ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL
                     HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL
                     TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF
                     IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH
                     RTLEKRKP"
     gene            26798..27070
                     /gene="npr"
                     /locus_tag="OQQ76_000097"
     CDS             26798..27070
                     /gene="npr"
                     /locus_tag="OQQ76_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS phosphocarrier protein NPr"
                     /protein_id="HCS1966726.1"
                     /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA
                     EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED"
     gene            27284..27979
                     /gene="yrbL"
                     /locus_tag="OQQ76_000098"
     CDS             27284..27979
                     /gene="yrbL"
                     /locus_tag="OQQ76_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP regulatory network protein YrbL"
                     /protein_id="HCS1966727.1"
                     /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDGGDG
                     GDGGDGGDGGDGGDGGDKEIRRELKYYAHLGRRLKDWSGIPRYHGTVETDCGTGYVYD
                     VIADFDGKPSITLTEFAEQCRYEEDIAQLRQRLKQLKRYLQDNRIVTMSLKPQNILCH
                     HISESEVIPVVCDNIGESTLIPLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQP
                     RESKTLALTSREA"
     gene            complement(27976..28704)
                     /gene="mtgA"
                     /locus_tag="OQQ76_000099"
                     /pseudo
     CDS             complement(27976..28704)
                     /gene="mtgA"
                     /locus_tag="OQQ76_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417675.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
     gene            complement(28701..29354)
                     /gene="elbB"
                     /locus_tag="OQQ76_000100"
     CDS             complement(28701..29354)
                     /gene="elbB"
                     /locus_tag="OQQ76_000100"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709007.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HCS1966728.1"
                     /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ
                     QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS
                     NFATLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA
                     EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE"
     gene            complement(29584..31920)
                     /gene="arcB"
                     /locus_tag="OQQ76_000101"
     CDS             complement(29584..31920)
                     /gene="arcB"
                     /locus_tag="OQQ76_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic respiration two-component sensor
                     histidine kinase ArcB"
                     /protein_id="HCS1966729.1"
                     /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM
                     VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL
                     SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF
                     LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK
                     VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL
                     ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI
                     FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV
                     ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI
                     FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV
                     AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK
                     PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD
                     VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI
                     TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS
                     PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK"
     gene            complement(32016..32945)
                     /locus_tag="OQQ76_000102"
     CDS             complement(32016..32945)
                     /locus_tag="OQQ76_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312117.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HCS1966730.1"
                     /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG
                     CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ
                     QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
                     HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHI
                     VKGSIMAKAWEAGRLNGIEQEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC
                     ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE"
     gene            33620..38080
                     /gene="gltB"
                     /locus_tag="OQQ76_000103"
     CDS             33620..38080
                     /gene="gltB"
                     /locus_tag="OQQ76_000103"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HCS1966731.1"
                     /translation="MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA
                     ILADGKTGDGCGLLLQKPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIV
                     EEELQRETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA
                     RRRIEKRLEADKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF
                     STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLHDAAPFVNET
                     GSDSSSMDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWD
                     GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG
                     PGELMVIDTRSGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELD
                     DDTLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ
                     QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT
                     TMKEEHYRADTLDITFDVTKTTLEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLP
                     VPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETL
                     GRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV
                     VGLCFQGTVSRIGGASFEDFQQDLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPD
                     VVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGENAVNIADVEPASELFK
                     RFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGR
                     FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH
                     DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT
                     GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE
                     SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE
                     TRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALYCTEN
                     NPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA
                     ADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
                     EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCIL
                     GKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLNVDDLAIHEEHLRGLITEHVQ
                     HTGSQRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ"
     gene            38093..39511
                     /gene="gltD"
                     /locus_tag="OQQ76_000104"
     CDS             38093..39511
                     /gene="gltD"
                     /locus_tag="OQQ76_000104"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit GltD"
                     /protein_id="HCS1966732.1"
                     /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQA
                     DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR
                     LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA
                     CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE
                     VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGE
                     TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN
                     AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPG
                     DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSD
                     LVVTAIAEGRKAADGIMNWLEV"
     gene            39695..40174
                     /locus_tag="OQQ76_000105"
     CDS             39695..40174
                     /locus_tag="OQQ76_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005085993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HCS1966733.1"
                     /translation="MESLSERTSTGYQQIHDGIIHLVDSARTETVRSVNALMTATYWE
                     IGRRIVEFEQGGEARAAYGAQLIKRLSKDLSLRYKRGFSAKNLRQMRLFYLFFQHVEI
                     RQTVSGELTPLGIPQTPSAEFPSAKIWQTLSAKLRGCLIFPQLLYCISYFRFVYSCK"
     gene            40191..40496
                     /locus_tag="OQQ76_000106"
     CDS             40191..40496
                     /locus_tag="OQQ76_000106"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1966734.1"
                     /translation="MIYIEQLELIHKSGDVLYPVKITRKSSGKTAFHLVPFGLNKTHD
                     LLEVEDASEAIRLVIDERHSIRCSTLTATITNKKGKRIKRTGIYSIKGVNIKEYNVR"
     gene            complement(40572..41036)
                     /locus_tag="OQQ76_000107"
     CDS             complement(40572..41036)
                     /locus_tag="OQQ76_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HCS1966735.1"
                     /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN
                     IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ
                     LCSTIDNEQAIILKPGMFAVFMPSEPHKPGCVVGEPGEIKKVVVKVKADLMA"
     gene            complement(41033..41908)
                     /gene="nanK"
                     /locus_tag="OQQ76_000108"
     CDS             complement(41033..41908)
                     /gene="nanK"
                     /locus_tag="OQQ76_000108"
                     /EC_number="2.7.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312122.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HCS1966736.1"
                     /translation="MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQALRDA
                     LAALVAPLQAHAQQVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLSNLPTIA
                     INDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPSGLAGHIGHTLAD
                     PHGPVCGCGRTGCVEAIASGRGIAAAAQGELMGADARTIFTRAGQGDEQAQQLIHRSA
                     HVLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHD
                     AGLLGAALLAQGEKL"
     gene            complement(41905..42594)
                     /locus_tag="OQQ76_000109"
     CDS             complement(41905..42594)
                     /locus_tag="OQQ76_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HCS1966737.1"
                     /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ
                     AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII
                     AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP
                     ETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ
                     WYNTAMKKAVL"
     gene            complement(42642..44132)
                     /gene="nanT"
                     /locus_tag="OQQ76_000110"
     CDS             complement(42642..44132)
                     /gene="nanT"
                     /locus_tag="OQQ76_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312124.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid transporter NanT"
                     /protein_id="HCS1966738.1"
                     /translation="MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT
                     EVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLAC
                     GFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA
                     AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY
                     RGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPT
                     GVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFL
                     GDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIG
                     GYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLI
                     GLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS"
     gene            complement(44241..45134)
                     /gene="nanA"
                     /locus_tag="OQQ76_000111"
     CDS             complement(44241..45134)
                     /gene="nanA"
                     /locus_tag="OQQ76_000111"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HCS1966739.1"
                     /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV
                     GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA
                     VSAVTPFYYPFSFEEHCDHYLAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG
                     VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ
                     GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP
                     VDEKYLPELKALAQQLMQERG"
     gene            complement(45256..46047)
                     /gene="nanR"
                     /locus_tag="OQQ76_000112"
     CDS             complement(45256..46047)
                     /gene="nanR"
                     /locus_tag="OQQ76_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417693.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NanR"
                     /protein_id="HCS1966740.1"
                     /translation="MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMI
                     RRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT
                     IIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ
                     SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVS
                     YQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK"
     gene            46427..47793
                     /gene="dcuC"
                     /locus_tag="OQQ76_000113"
                     /pseudo
     CDS             46427..47793
                     /gene="dcuC"
                     /locus_tag="OQQ76_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417694.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
     gene            complement(47836..48333)
                     /gene="sspB"
                     /locus_tag="OQQ76_000114"
     CDS             complement(47836..48333)
                     /gene="sspB"
                     /locus_tag="OQQ76_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HCS1966741.1"
                     /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPME
                     YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT
                     MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPT
                     LRVVK"
     gene            complement(48339..48977)
                     /gene="sspA"
                     /locus_tag="OQQ76_000115"
     CDS             complement(48339..48977)
                     /gene="sspA"
                     /locus_tag="OQQ76_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HCS1966742.1"
                     /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD
                     NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY
                     MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY
                     LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS"
     gene            complement(49372..49764)
                     /gene="rpsI"
                     /locus_tag="OQQ76_000116"
     CDS             complement(49372..49764)
                     /gene="rpsI"
                     /locus_tag="OQQ76_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HCS1966743.1"
                     /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA
                     RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG
                     FVTRDARQVERKKVGLRKARRRPQFSKR"
     gene            complement(49780..50208)
                     /gene="rplM"
                     /locus_tag="OQQ76_000117"
     CDS             complement(49780..50208)
                     /gene="rplM"
                     /locus_tag="OQQ76_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HCS1966744.1"
                     /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY
                     TPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE
                     IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI"
     gene            complement(50426..51553)
                     /gene="zapE"
                     /locus_tag="OQQ76_000118"
     CDS             complement(50426..51553)
                     /gene="zapE"
                     /locus_tag="OQQ76_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HCS1966745.1"
                     /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRP
                     PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR
                     LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
                     KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL
                     TQAHLWLSPLHDETRAQMDKLWLALAGAKRENSPTLEINHRPLATMGAENQTLAVSFT
                     TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS
                     AEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG"
     gene            51747..52145
                     /locus_tag="OQQ76_000119"
     CDS             51747..52145
                     /locus_tag="OQQ76_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HCS1966746.1"
                     /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE
                     LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES
                     EASNDQAPVQMPRDYSEGASGLLRTGAKRD"
     gene            52299..53666
                     /gene="degQ"
                     /locus_tag="OQQ76_000120"
     CDS             52299..53666
                     /gene="degQ"
                     /locus_tag="OQQ76_000120"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegQ"
                     /protein_id="HCS1966747.1"
                     /translation="MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAP
                     MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKG
                     YVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD
                     KLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGAL
                     LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM
                     SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT
                     TEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGI
                     KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESI
                     YLLMR"
     gene            53756..54823
                     /gene="degS"
                     /locus_tag="OQQ76_000121"
     CDS             53756..54823
                     /gene="degS"
                     /locus_tag="OQQ76_000121"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HCS1966748.1"
                     /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP
                     ASYNLAVRRAAPAVVNVYNRGVNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD
                     QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN
                     PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL
                     SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQSGGI
                     DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV
                     VMRDDKQLTLQVTIQEYPATN"
     gene            complement(54886..55824)
                     /gene="mdh"
                     /locus_tag="OQQ76_000122"
     CDS             complement(54886..55824)
                     /gene="mdh"
                     /locus_tag="OQQ76_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000861594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS1966749.1"
                     /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV
                     DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV
                     QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE
                     LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE
                     ERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK"
     gene            56259..56729
                     /gene="argR"
                     /locus_tag="OQQ76_000123"
     CDS             56259..56729
                     /gene="argR"
                     /locus_tag="OQQ76_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HCS1966750.1"
                     /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP
                     GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL"
     gene            57094..57357
                     /gene="yhcN"
                     /locus_tag="OQQ76_000124"
     CDS             57094..57357
                     /gene="yhcN"
                     /locus_tag="OQQ76_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417705.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HCS1966751.1"
                     /translation="MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSG
                     VASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK"
     gene            complement(57413..57685)
                     /locus_tag="OQQ76_000125"
     CDS             complement(57413..57685)
                     /locus_tag="OQQ76_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="barstar family protein"
                     /protein_id="HCS1966752.1"
                     /translation="MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN
                     DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH"
     gene            complement(57777..59744)
                     /gene="aaeB"
                     /locus_tag="OQQ76_000126"
     CDS             complement(57777..59744)
                     /gene="aaeB"
                     /locus_tag="OQQ76_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeB"
                     /protein_id="HCS1966753.1"
                     /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA
                     IVAAGPAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW
                     AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA
                     IMADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQ
                     GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT
                     PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE
                     EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS
                     LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE
                     VQQRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR
                     DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM
                     IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK
                     LRIWQAPPQVTEPVHRLAGMLHKYQHALTDS"
     gene            complement(59750..60682)
                     /gene="aaeA"
                     /locus_tag="OQQ76_000127"
                     /pseudo
     CDS             complement(59750..60682)
                     /gene="aaeA"
                     /locus_tag="OQQ76_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417708.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeA"
     gene            complement(60690..60893)
                     /locus_tag="OQQ76_000128"
     CDS             complement(60690..60893)
                     /locus_tag="OQQ76_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AaeX family protein"
                     /protein_id="HCS1966754.1"
                     /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFV
                     WHPALFNTALYCCLFYLISRLFV"
BASE COUNT        15217 a        16267 c        15124 g        14485 t
ORIGIN      
        1 tttgatgctt tttcgctgct aaagcaaaat agttgagatt gaaaaacggc gtataggtag
       61 caaatcgcga cgctagtata tatggactga acgttttttt attttttgca tctttataag
      121 caaattgaca agcggaaaat aaactgcccg aaatgacaat cagcaataat attcctgtca
      181 ctttttttgt cggcaaggaa acatcatatt ttattattac tacccaaaaa agaagggata
      241 aaaaagcaaa ggcacataga taagggatat acatccccag cattttgaca acttcatccg
      301 gatcactctg gagcacacta atcgcaaatc catcattgaa agttgtacca aaggtacacc
      361 atgaatagag gctaatactc atgtctgccg cagtcagtaa cacaaatggt gcggcaacaa
      421 gcaggcgaag cggaagggat gatatacgtt ttacaaccag gatggtcagg acgaagaaca
      481 gcaatcgctg aaccatatgc gcgccggaag aggcgactaa gttcgtaata ccaaaaacaa
      541 taacacaaag atacaacaac caatgagatt taaaacttct agcaaatttg ttgaatactg
      601 tcatccagaa atccaagttc acaaccaata taaacaatta tcaacaatgt tcaattttat
      661 atcagacatg tttttcaact ctgatccata tcagaccgaa acactgttag ttttttcttt
      721 ttaaatgatg cggccattgc gttctcagta attaaataac attatcaatg cgtctctaaa
      781 cattacgcag aacgtagcca tcagtagtta tactgacagg agcaggatgg tttatcgaga
      841 agtaaacata tccgtattcg taccggaact ggagttgaca caataaagtg ccaattatgt
      901 cagcagaagg gaaaagttta taactaaggc gtaccggcac catcgtttca aggtaccagc
      961 tacgagtaaa gcaactggac gagatacaga tacctgacaa ccattcctca gaccaggacc
     1021 aaaacgaaaa aagacgcttt tcagcgtcct ttttctggaa tttggtaccg aggacgggac
     1081 ttgaacccgt aagccctatt gggcactacc acctcaaggt agcgtgtcta ccaattccac
     1141 cacctcggca cggatactac tttttagttc gggatatcgc tggtcggctt agccggagca
     1201 gctggttgag tttgttcggt tttcgccggt gcactcagat tttcccattc gctaccttta
     1261 ttggttttgt tgctattgat gttacccagc accagactga tgatgaagaa taacgttgcc
     1321 agcagcgccg tcatgcgggt catgaagtta ccagaaccac ttgaaccaaa cagcgtagcg
     1381 gaagcgcctg ctccgaagga ggctcccata tcagcgcctt taccttgctg cagcatgatc
     1441 agaccaacaa ggccaattgc cacaataagg aaaactacca aaagagcttc gtacataatc
     1501 aacctgttcc ttgcggagtt gccgcgtacc aatgcttcaa ccaataaagc gggagttttt
     1561 aatctttccc actgaagcgg gtgtgaatac taaccaaagc gaatgacctt cgcaagggca
     1621 attttatcgc attgtatcaa ctgcggaaaa aaacagcaaa accgatgtgt tcgctgagaa
     1681 aaaaggcgac aatcgccgcc tttttagcca gtcatttatc gttttaaacg gcttttactg
     1741 catcggcgat gcggtgtgca aattcagtca cctgcgcttc gtcttcgcct tccaccatca
     1801 cgcgaattaa cggttcggtg ccggatttac gcagcaacac gcgtccacgg ttgcccagcg
     1861 cagcttcaac ctctgcggtc acggctttaa ctgactcatg ctcaagcgga tcgccgctac
     1921 ctgcggtgta acgcacgtta accagaatct gcgggaacat tttcatgccg ctgcaaaggt
     1981 cgtgcaggct catatggtta cgtgccatcg ccgccagcac ctgcaagcca gcaacgatgc
     2041 cgtcaccggt agtggtttta tccagcagga tcacatgacc ggaattctct gcaccgatac
     2101 gccagccttt ctcctgcatt ttttccagta cgtagcggtc acccactttc gcgcgcgcaa
     2161 atggaatacc taactgtttc agcgccagct caagccccat gttactcatc aatgtaccca
     2221 cagcaccacc acgcagctgg ccctgacgaa gaccttcacg cgcgatgata tacatgatct
     2281 gatcaccatc gactttattg ccttcatggt caaccataat cacgcgatcg ccgtcgccgt
     2341 cgaaggcaat accgagatcc gctttttcag ccagcacacg agcctggagc gcgcgaacgt
     2401 cggtagcccc cacttcggca ttgatgttta caccgttcgg ctcacaaccg atagcgataa
     2461 cgttcgcccc cagttcacgc agcacgttcg gcgcgatgtg ataagtcgca ccgtttgcgc
     2521 aatccaccac aatcttcagt tcgctgaggc taagttcgtt cgggaacgtg gctttgcaaa
     2581 actcgatata gcgacccgca gcatcaacga tacggctggc tttacccagt tctgccgaat
     2641 caacacagct gatctctttt tccatttccg cttcgatggc ctcttctacc gcatccggta
     2701 gtttggtgcc gtcgatagag aaaaatttaa tgccattatc gtagaacggg ttatgcgatg
     2761 cagatatcac aattccggcc tctgcgcgga aggtacgcgt cagataagcc acggccggtg
     2821 ttggcatcgg gccagtgaag agtgcggaaa ggcccgctgc cgccagaccc gcttccagtg
     2881 ctgactccag catatagcca gaaatacgcg tgtctttacc aataatgatc ttacgggagc
     2941 cgtggcgcgc cagcacttta cccgcggccc aacccagctt aagcacaaaa tcaggtgtga
     3001 tcggcgcatc ccctacacga ccacgaatcc catcggtacc gaaatattta cgattactca
     3061 tagcgtttgt tttcctttgc agacagagtg gcttccacca cccgcatcgc ttctacggtt
     3121 tctttgacgt catgaacacg aataatgtgc gcgccttgca ttgcggcaat gaccgcacag
     3181 gccagactac cgctcaggcg ctcggacggc cccacgttca gcagctgccc aatcatcgat
     3241 tttcgtgaca tacctaccaa cagcggcagg ttgaaatggt gaaattcagc caggcgcgcc
     3301 agtaatgaat agttatggga gagattttta ccgaaaccga atccggggtc gagcaacaat
     3361 ttctcttttg cgatacccgc ctgctcgcaa cgtgctattt gctcaataaa gtagcgattc
     3421 acttctgcaa agacatcgtc atacttcgga gcttcctgca tggtttttgg atttccctgc
     3481 atatgcatca gacaaaccgg taaaccggtt tctgccgccg cctccagagc gccaggttcg
     3541 gaaagggagc ggatatcgtt aataatgtga gcgccaactt tcgctgactc acggatgact
     3601 tctggtttgg atgtatctac cgagagccag acttcgaagc gttgagcaat tgcctcaacc
     3661 acaggaataa cacgttgcaa ctcttcttca acgctaactt ccgccgcccc tgggcgcgtg
     3721 gactcgccac caacgtcaat gatcgtcgcg ccagcgttga tcatcagatt cgcatgtttc
     3781 accgcatcta tcagcgagtt atgcgtgcca ccatccgaaa aggaatcagg cgtgacgttg
     3841 aggatcccca ttacgtgagg atggctaagg tccagtgaag tgccctgggc aaagagtttc
     3901 atggtgttat ccctggtatg aattgataag aaaaaacccc ggagcacgcc ccggggtttt
     3961 cggtacaaat acagtcatct gatgcgggaa cttacttgtc gcctaactgc tctgacatgg
     4021 tgttacccgg gttcggcgta cgcggttcat caaccggacg aggagccttt ggactaccat
     4081 tgtcgccaga attgttagaa gcgcctggtt cttcccagcc cgctggcgga cgtacatcgc
     4141 gacgtgccat caggtcatca atctgcggtg cgtcgatagt ctcatatttc atgagagcat
     4201 ctttcatcgc atgcagaata tccatattgt cggtcagaag ctgacgcgca cgattatagt
     4261 tacgctcaat cagtgctttc acttcctggt cgatgatacg tgcagtttca tcggacatat
     4321 gtttcgcttt tgctacgcta cggccgagga acacttcacc ttcttcttcc gcgtacagca
     4381 gtggacccaa tttctcagag aagccccact gagtcaccat gttacgcgcc aggttggtcg
     4441 caactttaat atcgttggac gcaccggtag aaacatgttc cggcccgtag atgatctctt
     4501 ctgccagacg accaccgtac agcgtagaaa tctggctttc cagtttctga cggctggcgc
     4561 tgattgcgtc gccctcaggc aagaagaaag tcacacccag cgcacgaccg cgtgggataa
     4621 tcgtcacttt gtgcaccgga tcgtgttccg gcaccaggcg accgataatc gcatgacccg
     4681 cttcgtggta agccgtcgat tctttctgcg cttccgtcat caccatggag cgacgttccg
     4741 cacccatcat gattttatct ttcgcttttt cgaactcaat catcgacaca acgcgtttgt
     4801 tgccacgagc agcgaacagt gccgcttcgt ttaccaggtt cgccaggtca gcaccggaga
     4861 aactaggagt accacgggca atgattgccg cgtcgatatc gggtgccaat ggtacgcgac
     4921 gcatgtgaac tttcaggatc tgctcacgac cgcgaacatc tggcaagcca accacaacct
     4981 gacggtcgaa acggccagga cgcagcaggg ccgggtcaag aacgtccgga cggttagtcg
     5041 cggcgataac gatgatacct tcgttacctt cgaagccatc catctcaacc agcatctggt
     5101 tcagagtctg ttcacgttca tcgtgaccac cgcccagacc agcgccacgc tggcggccta
     5161 cggcgtcgat ttcatcgata aagatgatgc acggtgccgc tttcttcgcc tgttcgaaca
     5221 tgtcacgaac acgggatgca cccacaccga cgaacatttc tacgaagtca gaaccggaga
     5281 tagtaaagaa cggaactttc gcttcgcctg caatcgcttt cgccagcaac gttttaccgg
     5341 tacccggagg accgaccatc aggacgcctt tcgggatctt accgccgagt ttctggaagc
     5401 ggctcggctc gcgcagatac tctaccagtt cagcaacttc ttcttttgct tcgtcgcagc
     5461 ccgcaacgtc agcaaaggtc gttttgatct gatcttccgt cagcatgcgc gctttgctct
     5521 taccaaacga catggcacct ttgccaccgc cgccctgcat ttgacgcatg aagaagatcc
     5581 agacaccaat cagcaacagc atcgggaacc aagagatgaa gatagaagcc agcaggcttg
     5641 gttcttcagg cggttcaccg acaaccttga cgttcttggt caacaggtta tccagtaatt
     5701 tcggatcctg aaccggaatg taagtggtat aacggttact atctttcttg gtaacgttga
     5761 tttcacgtcc gttgatacgc gcttcacgaa cctggtcgtt attgacctct tgtaggaagg
     5821 tagagtaatc caccttacgg ccattagact cgctgggccc aaagctctgg aatactgaca
     5881 tcagcacaac ggcaatgacc agccagagta ttaggttttt cgccatgtca ctcaagggat
     5941 taacctctta ttacaactgt gttaaaaaca gcgtcaggat actctatatc cagcatcttt
     6001 caaactttcg tctgaaatct cccggttagg gtttacgccc ggtcgctaca atatacactt
     6061 cccgcgaacg tgcacgagaa gagtccggct tacgaacttt gaccttcgta aacagggagc
     6121 gaatttccct tagatactca tcgaaacctt cgccctggaa caccttcact acaaaactgc
     6181 cacctggcgc taatacatca cgacacattt ctaacgccag ttccaccaga tacatggcac
     6241 gggggatatc caccgccggt gttccgctca tgtttggtgc catatcggac atgacaacct
     6301 ggactttgct gtcgccaacg cgctccagca gtgctttcat caccagttca tcacgaaaat
     6361 cgccctgaag aaagtccaca ccaacgatag gatccatagg taaaagatcg caagcgatga
     6421 tgcggccttt gccgccaatt tgggtgacca catattgtga ccaaccaccc ggagcagcac
     6481 caaggtcgac aaccgtcatt cccggtttaa agagtttgtc actttgctgt atttcatcaa
     6541 gtttaaacca ggcacgggaa cgtaacccct ttttctgtgc ctgttgaaca tatttatcgc
     6601 taaagtgttc ctgaagccag cggctggagc tggcagaacg cttcttacct gtcatttaac
     6661 tttcccatgg ggataactca tcgtaaccaa ttgcgtaaat ttttacgcgc ctatttggtg
     6721 atatatggga gatggcggta gaatgacccg ttttcaatcc caacgtaagc aaaaaatacg
     6781 atgaatctga gtactaaaca aaaacagcac ctgaaaggtc tggcacatcc gctcaagcca
     6841 gttgttctgc ttggcagtaa tggtttgacc gaaggggtgc tggccgagat tgaacaagcg
     6901 ttagagcacc atgaactcat caaggtgaaa atcgccaccg aagatcgcga aacaaaaacc
     6961 ttgatcgtgg aagctatcgt gcgcgaaacc ggcgcctgta atgtacaggt catcggtaaa
     7021 acgctggtgc tttatcgccc aactaaagaa cgtaaaatct cgctgccacg ctaagattat
     7081 cctaaactta cacacatttg ctgtgtaaaa cgaggggttt tccgcaggca ggagagcaaa
     7141 atgccacgct ctgttcgttg ataaaaggcc gcatagcggc ctttttcctt tctttacaat
     7201 acatcaacat cttgatgtat tgggtaattc ttacaggtat tccaccttaa ttacttcaaa
     7261 ttctacttcg ccgcccggcg ttttgatgac cacaacatca tcttcttctt tgccgatcag
     7321 gccacgagca ataggcgagt ttacagaaat caggttttgt ttaaagtcag cttcgtcatc
     7381 gccaacgatg cgataagtct gttcttcgtc agaatccaga ttcagcaccg ttacggtagc
     7441 accaaaaata acgcgcccat tgttgggcat tttggtgaca tcaatcacct gcgcgttcga
     7501 cagcttggct tcgatgtctt taatacggcc ttcgcagaaa ccctgctgtt cacgagctgc
     7561 gtggtattcg gcgttttctt tcaggtcgcc atgctcacgc gcttccgcga tagcagcaat
     7621 gatttcagga cggcgcacag atttcagaaa atccagctct tcgcgtaatt tttcagcgcc
     7681 gcgtaaggtc atcggaatag cttgcatttg ttatacctct tgaatattcc tgatggggca
     7741 agtcttcacc caccccggct gttcggcctg cccggcataa ctcctcaccg ggaccagaag
     7801 caaaaaaata ccgacccggg tacaagtccc aggtcagcta caattcacat tttgatagtc
     7861 attttaccct gaagttcccg aagggtcatc gtttacttta tagggcgttg cgccgtagta
     7921 tgacggcttg attccaggtt gttagcgcga gattatgcga ttttccagat ttatcatcgg
     7981 attgaccagc tgtatagcgt tcagtgttca ggccgcgaat gttgatgagt acgttactca
     8041 actccccgct ggtgccaacc ttgccctgat ggtgcaaaaa gtcggcgcgt cggcccccgc
     8101 tattgattac cacagtcagc agatggcgct gcccgccagt acgcagaaag tgattactgc
     8161 gctggcggcg ttgattcaac tcggccccga ttttcgtttc accacgacgc ttgaaaccaa
     8221 aggcaatgtg gaaaacggcg tacttaaggg tgacttagtg gcgcgatttg gtgccgatcc
     8281 gacgttaaaa cgtcaggata ttcgcaatat ggtcgcgact ttgaaaaaat ctggcgtcaa
     8341 ccaaatcgat ggcaatgtgt tgatagatac ctccattttc gccagccacg ataaagcccc
     8401 cggctggcca tggaatgaca tgacacaatg ctttagcgct ccgcctgccg ctgccatagt
     8461 tgaccgcaac tgtttctccg tctcgctcta cagtgcccca aaacctggtg atatggcttt
     8521 tatacgcgtg gcatcttatt accccgttac gatgttcagc caggtacgca ccctcccccg
     8581 aggttctgcc gaagcgcaat actgcgaact ggatgtcgta ccaggcgacc tgaaccgctt
     8641 tacgctgacg ggatgcctgc cacaacgttc tgagccgctc ccgttggctt ttgccgtgca
     8701 ggatggagcc agctatgccg gggcaattct gaaagatgag ttaaaacagg caggtatcac
     8761 ctggagcgga acactgctgc gccagactca ggttaacgaa cctggaacgg tagttgccag
     8821 taaacagtcg gccccgttgc acgatctgct taagattatg ctgaaaaagt cggacaacat
     8881 gatcgccgat acggttttcc gcatgatagg ccatgcgcgc ttcaatgtgc ctggaacatg
     8941 gcgggccggg tcggacgccg tgcgtcagat cctgcgccag caagccggtg tcgatattgg
     9001 aaacaccatt attgccgatg gttcagggct ttcgcggcat aacctgattg cccccgccac
     9061 catgatgcag gtgttgcaat acattgccca acacgacaat gaacttaact ttatctccat
     9121 gctgccgctg gcgggctatg atggctcttt gcagtaccgt gcaggtctgc atcaggcggg
     9181 cgtggatgga aaagtctcag cgaaaaccgg ttcgttgcag ggggtatata acctggcggg
     9241 attcattacc acagcgagcg ggcaacgaat ggcgtttgta caatatcttt ctggctatgc
     9301 agtagaaccg gcggatcagc gtaatcgccg tattccgtta gtgcgttttg aaagccgttt
     9361 gtataaagat atttatcaga acaattagtc aaaaagaaac cccggcacat ggccggggtt
     9421 ttgctgatta acgcttgtaa atgaactcaa cgccttcttc gtcgtcttcg tcccagtcat
     9481 catcccagtc ctcatcatcc tcttcagcaa tctcttcaag ctgctggcga tgataatcat
     9541 cccacatgaa ttcgactttc tctggctgtt tcgcttcttc agcctgcacg accgggtttt
     9601 caatgataaa ggtcatcaca tcccagcaga gatctttcac gcccagtcca ctcgccgcag
     9661 agatcagata atatttatct tcccagccca gcgcttcagc aatcgctttc gctttctctt
     9721 cagcttctgc cttatccagc agatcgatct tattgaacac taaccaacgc ggtttcgccg
     9781 ccagatcctg gctgtatttt tccagctcgc tgataataat acgcgcgttt tcaaccggat
     9841 cggtgccgtc aatcggatcg atatcgatga ggtgcaacag gacgcggcaa cgttccaggt
     9901 gcttcaggaa gcggataccc agacctgcgc cttccgcagc gccttcaatc agtcctggaa
     9961 tatcggcaac aacgaagctc ttttcgttgt ccattcgtac cacacccaga cttggcacca
    10021 gagtggtaaa cggataatcc gccactttcg gtttagccgc cgataccgcg cgaataaagg
    10081 tcgatttacc cgcgtttggc atccccaaca taccgacgtc agccagcagc atcagctcca
    10141 gcagcagctc acgcttatca cccggcgtac cgttggtttt ctgccgtggt gtacggttaa
    10201 cggacgattt gaaacgggta ttgcccagac cgtgccagcc gcccttagca accagcagac
    10261 gctgaccgtg tttagtcata tcgcccatgg tttcaccagt accctggtcg attacacgcg
    10321 tacctaccgg cactttaatc gtcacgtctt taccgcgctt accggtacaa tcgcggcttg
    10381 cgccgttctg accgcgctct gcacggaaag atttttcaaa acgataatcg ataagcgtgt
    10441 tcaggttttc gtcggcttcc atccatacgt caccaccatc accaccgtcg ccgccatccg
    10501 ggccgccttt cggaatatac ttttcgcggc ggaagctcac gcaaccatta ccgccatcac
    10561 ctgcaacgac cagaatcgat gcttcatcaa caaacttcat tttattctcc gtaaatcatt
    10621 cgcctgcgcg gggttgcgat accaccgttg tatgcttacg taatccgccc caaatacgat
    10681 gaccaatggc ggaatacatc gcgcccgcaa ccacgacaaa cgcaccgaga taacctaaaa
    10741 ggtttaacat cggtctggcg aagaaatcgg gccaggccag tgataaaaga tctgaaaaaa
    10801 acagcgtaaa cagtggggtg agcgtgatga tcgcgctcac ctgcgctgcc tgccagcgag
    10861 ccatcgcttc cgccagggcg ccatatccta ccaatgtatt cagtccgcaa aaaattaaac
    10921 atgcgagctg ccagtggcta agctgcgcta tcactcctgg ctttgccaga gggaagagcg
    10981 caattgtaca taaagtgtac agcaaaaaca ggatctgcgg tgaggccagc cgacgcaata
    11041 aaaccttttg cgccacgcca taactcaccc aaaccgtcgc cgcaccgacc ccaaagatga
    11101 ctccccaggt gtaatcagtg agctttgtaa atatctcgac cagagtggtg ttaaaaaaca
    11161 tcaccaggcc gctcaggagc atcaatgccc ctacaacctg agtgctgcgc attttctctt
    11221 tcaggataaa tacgctggca accatcatgc caactggcga gagttgccca atcacctgcg
    11281 aagcggtcgg actcaggtat tgcaaggatg agctgaacag gatgaagttc ccaaacagcc
    11341 cggcggtcgc cactgccaac aaaatcaacc agcgtggctt acgaaacacg cgtaatggcg
    11401 gcaacctctt cttcaccgca agaatggcac ccaggccaat actcgccatc aagaaacggt
    11461 aaaacacgat tgtcggaggt tccatcacct ccagcacctg cttcattgcg attggcaacg
    11521 ccccccagca aattgctgtg gtgagcgcca aaagaatgcc aatgcctgcc tgctgcttca
    11581 taccgtattc cctgcaaagc gcatttgcgg attaacgtcg cttaccggtt atcgaatgta
    11641 aaaagccccg caacgtgttg cggggctttc atccgttacc gggacacgaa aaacttattc
    11701 agcttcgatg ctgataaatt tacggttttt cgggccttta acttcgaatt tcactttacc
    11761 gtctgcttta gcaaacagag tgtggtcacg accgcaacct acgttagcgc cagcgtggaa
    11821 tttggtacca cgttgacgaa cgatgatgct acccgccaga acggattcgc caccgaaacg
    11881 cttaacgccc aggcgtttag cttctgaatc gcgaccgtta cgtgtggagc cgccagcctt
    11941 tttatgtgcc atttgaaatc tctcctcagg tcttaggcgc tgatgccagt aattttcaca
    12001 tcagtgaacc actgacgatg gccctgctgc ttacgatagt gtttacgacg acgaaactta
    12061 acgattttaa ctttctcgcc acgaccgtga gcaacaactt cagctttgat tacgccgcca
    12121 tcaacgaaag gaacgccgat tttgacttct tcaccgtttg cgatcatcag cacttcagcg
    12181 aactcaacag tttcgccagt tgcgatgtcc agcttttcca ggcgaacggt ctgaccttcg
    12241 cttactcggt gttgtttacc accactttgg aaaaccgcgt acatataaaa ctccgcttcc
    12301 gcgcacacct tttcaatgat tcagagtgcg ctataaatat tcacaatagg gcgcgaatat
    12361 tacgcaaaac gcacgccttt gacaagtgct acagtcaata cacgaagaaa aaaaacacaa
    12421 cttgtacggt aacgtttatc tgtgccattt tttcagtaca atcaccctat attcctaacc
    12481 ataaacccta agttgccttt gttcacagta aggtaatcgg ggcgaaaagc ccggcttttg
    12541 cgatgaattt agaaaaaatc aatgagttaa ccgcgcaaga tatggcgggt gttaatgcgg
    12601 caatccttga gcagcttaat tccgacgtcc aactgatcaa tcagttaggc tattacatcg
    12661 tcagcggcgg cggtaaacgt attcgtccga tgattgctgt actggctgca cgagctgttg
    12721 gctatgaggg aaatgcgcat gtcaccattg ctgccctgat cgagtttatc cacacggcga
    12781 ctctgctaca cgacgacgtt gtggatgaat cagatatgcg caggggtaaa gctaccgcca
    12841 acgctgcatt tggcaatgcc gccagcgtgc tggtaggcga ttttatttat acccgcgcgt
    12901 tccagatgat gaccagcctc ggttcactca aagtgctgga agtcatgtca gaagctgtaa
    12961 acgtcatcgc agaaggtgaa gttctgcaac tgatgaacgt taacgatccg gacatcactg
    13021 aagaaaacta catgcgcgtt atctatagta aaaccgcgcg tctgtttgag gctgccgcgc
    13081 agtgttccgg gattctggct ggctgtacgc cggaggagga gaaaggcctg caggattatg
    13141 ggcgctatct cggcactgct ttccagttga tcgacgattt actcgattac aatgccgatg
    13201 gcgaacagtt aggtaaaaac gtcggcgacg atctgaacga aggtaaaccg acgctgccgc
    13261 tgctgcatgc gatgcatcat ggcacaccag aacaggcaca gatgatccgt accgccatcg
    13321 aacagggtaa cggtcgccat cttctggaac cggttctgga agcaatgaac gcttgtggat
    13381 ctcttgaatg gacgcgtcag cgcgccgagg aagaagcaga caaagccatc gcagcgttac
    13441 aggtgctccc ggacacccct tggcgagaag cactcatcgg cctcgcgcac atcgctgttc
    13501 aacgcgatcg ttaatcccct cccttcatcc cgcgcagtgc gcgggatgat tccagtaaat
    13561 tccataaaaa cactaattca gcgctataac acctgaaaaa aaggcgatga atctttatat
    13621 attctgaata ttcacactct ttacaggaac tttttagagc aataggccat caggagtata
    13681 gtgatgcccg acagaagaag tgttctgaat gaaagcgact aacttaagga gtgaggaaag
    13741 atggaaagta atttcattga ctggcatccc cctgacatca ttgcaggttt gcgcaagaaa
    13801 ggaacgtcaa tggcggcgga atctcgcaga aatggtttga gttcctcaac gctggcaaac
    13861 gcattatcgc gcccatggcc gaaaggagag atgattattg cgaaagccct gggaactgac
    13921 ccctgggtta tctggccatc acgctaccat gatccgcaga cccatgagtt tatcgacaga
    13981 acgcagttga tgcgtagcta cactaaaccg aaaaaatgag tggtctggcg gtagccccgc
    14041 gaacggggct gccagctctc agacgattac tcgcctttca cacgcttaat atttgcacct
    14101 aaagcgcgca gtttgtcttc aatgcgttcg tagccacgat cgatgtgata aatacgatca
    14161 accaccgtcg tcccttccgc aatacagcca gccagcacca ggcttgctga tgcacgcaga
    14221 tcggttgcca taacctgtgc accagaaagt ttttcaacac catgacaaat aacggtattg
    14281 ctttcgattt cggcatgcgc gcccatacgg ctaagctccg gcacatgcat aaagcggttt
    14341 tcaaagaccg tttcggtgat gaatccggtc ccttctgcca ccaggttcaa cagcgtgaac
    14401 tgggcctgca tatcggtcgg gaatgccgga tgcggcgcgg tacgtacgtt aacagccttc
    14461 ggacgtttgc catgcatatc caggctaatc cagtcttcgc cgacttcgat gtccgctcca
    14521 gcgtcacgca gtttcgccag cacggcgtcg agagtatctg gctgcgcgtt acggcagata
    14581 attttgccgc gagaaatcgc cgccgccacc aggaaagtac cggtttcgat acgatccggt
    14641 agcacgcgat agacaccgcc gcctaaacgt tccacacctt cgatgacgat acgatcggtg
    14701 ccctgaccgc taattttcgc acccagcgta atcaggaagt tcgcggtatc gacgatttcc
    14761 ggttcacgcg ctgcgttttc aataatcgtg gtaccttccg ccagggttgc agcacacatg
    14821 atggtcaccg ttgcgccaac gctgacttta tccatcacga tatgtgcgcc tttcagacga
    14881 ccatcgacgg aagctttaac gtaaccttct tccagtttga tggtcgcgtc taattgttcg
    14941 aggccagaaa tgtgtagatc aaccggacgc gcaccgatcg tacaaccgcc aggcagtgaa
    15001 acttgcccct gaccaaagcg cgctaccagc ggccccagtg cccagataga agcacgcatg
    15061 gttttaacca gatcgtaagg tgcgcagaat acattaacgt cgcgggcatc aatatgcaca
    15121 gaaccattac gttctacttt cgcacccagc tgacttagca gcttcattga tgtatcgacg
    15181 tctttcagtt tcgggacgtt ctggatctct accggttctt ccgccagtag agcggcaaaa
    15241 aggataggca gagcagcatt tttagcgccg gaaattgtga cttcgccctg gagcttcgtt
    15301 ggcccctgaa cacgaaattt atccatttag tttgttctca gttaacaatt catatccgct
    15361 accggcgaat cgcccatagc tcaaaagccg ttcagtttgc gatcgcgcgc ccactccgca
    15421 ggggtatacg ctttgatcga cacagcatga atgcggttat ccgcaatata ttccatcagc
    15481 gggccataga ccgtctgctg ttttttaacc cgactcatgc cgtcaaacaa ctcacccacg
    15541 gcaataacct gaaagtggct gccatcgccc gaaacgtgga cttcctggag ggagagagcg
    15601 ttcatcaaca cgctctgaat ttcattattt tccatgggat cttcaatcat cagttaataa
    15661 accagcgaaa catcttagag caaagttgcg ctggcataaa taagcaaaaa gcctcgctga
    15721 taaatcagac aaggctcgac ttgcaggcag gtttgccgga caggcggtta acgccatatc
    15781 cggcctgaaa aaatttaacg aggcagaaca tcagcaggca aattatacaa tttcgccagg
    15841 gtatacactt tgtcgtttac cccctgaagc gtcacattgt tgccctgctt tttcgccaga
    15901 tcgataagat ggagcagcag tgccagtccc cccgtatcca cgcgggacac acggctaaga
    15961 tcgatgcagg taatcccctt caccgcttcc tcacgcattt cccaaagcgg tagcaaaacg
    16021 tcctgatcca gctctccgga taacgccagc gtgtcacccg tctgcatcca gctcagtgac
    16081 tcgctcatta ttttttctct tccagagtga ttttctgttg agaaatcgat ttcagttgcg
    16141 cagtcaggcc gtcgatacct ttggtacgca gcagcgttcc ccactcgttt tgtttggtgg
    16201 tgatcatact gacgccttca gcaatcatgt cgtaagcctg ccagttgccc gtctgggagt
    16261 ttttacgcca ctggaagtcc agacgcaccg gcgggcggcc attcggatca ataatggtaa
    16321 cgcgaatcgg cacaatggtt ttatcgccca gcggctgttc tggcgcaatc tgataggttt
    16381 gaccgtgata catcgccagc gcctgaccgt aagcctgctt caggtactca cggaaagcgg
    16441 caaagtaggc ttcacgttga gcaggggtcg cactcttgta atactggccc agcaccagcg
    16501 caccggcgta tttcacctgt acgtatggca gcagttcctg atcaacaatg gtacgcagat
    16561 aatccgggtt ggcccgaatt tgcggttgct cattcttcag gcgatcgaac gttttctgcg
    16621 ccgcctcgtc catcagctta taaggattgg tctggtctgc cgcggttgcc gcactcagcg
    16681 gtgcaatcac cagcaaagcg accatcatta aacgtttaaa catgcgtcgg ttctcctgaa
    16741 attatttcgt tgtacccaca ggttcagtgg tttcattatt acctggcgca gcagctggcg
    16801 catcgccact attcttattg tcatcgcctt tactaccgta aaggaactga ccaatgagat
    16861 cttccagcac catcgcagac ttagtgtcct gaattgtatc gccatccttc aggatagcag
    16921 tccccagttc cgggtcttca aaaccgacgt ttaatgccag atattgttcc cccagcaggc
    16981 cggaagtacg aatgctcagc gaactggtat ctggaatgtg gttataacgt tgttcaattt
    17041 ccagcgttac gcgtggcaga taggttttcg ggtccagcgt aatatccgcc acccggccca
    17101 caacaacgcc accaatactg accggagagc gcgctttcag gccgccaatg ttatcgaacg
    17161 tcgcataaag cgtgtaggtc ggttcagtac gtatggacgt cacgttcgcc gccttcaggc
    17221 aaacaaacag agccgccagc agtgctgcta ataaaaagat acccacccaa atttcatttt
    17281 ttttcgtttg catgaactca attcccaaac atcaatgcgg tcagcacaaa atccagcccc
    17341 agaacagcca gagacgagtg gacaacggtg cgagtggttg cccggctaat cccggcagac
    17401 gtcgggatgg cgtcgtagcc gttaaacaac gaaatccacg tcaccgtgat ggcgaacacc
    17461 acgctcttaa tcagacagtt gaccagatcc atacgccagt cgacggcatt ttgcattgcc
    17521 gaccagaaga acccgctatc aatgcctttc caactgacgc cgaccagaga tccgccccag
    17581 atccccacgg cgacgaaaat aaccgtcaac agtggtaatg aaataacccc agcccataaa
    17641 cggggagaaa taacccgacg cagcggatcc accgccatca tctccatact ggagagttgc
    17701 tctgtagcgc gcatcaggcc gatttctgcg gttagcgccg aaccagcacg cccggcaaac
    17761 aacaacgcgg caaccaccgg ccccagttca cgcagtagcg ataacgccac cagcataccc
    17821 agactggttt ccgcactata agtggtcaga accagataac cttgcagccc caacaccatt
    17881 ccgatgaaca cgccagaaac cacaataatc agcatcgaca ggacgccgac attatagagc
    17941 tggcgcacca gcagcggcgc atgtttgcga aattccggtt tgccgaccag cgcattgaat
    18001 aacattaacc cggcccgccc gaacgttctc agggttttaa tccctttatg tccgagcgac
    18061 gccagcgcat ttaacagcat gagtggctta actccctggt aaaagatcag cgtgataatc
    18121 gccggcagga tagcggaacg gaacaggccc gtcagctatc ccgtccagaa actgacgtac
    18181 gcgcggatca ggattcgcct gcaacgcctg ggcactgcca tgagcgacaa tttttttgtc
    18241 cgccaggatc caggcgtgat ccgcaatact taacacttcc ggcacatcgt gagaaaccac
    18301 cacacaagtc acgcccagcg cgctgttcag ctcagaaatc agcttcacca gtacgcccat
    18361 ggtgatggga tcttgcccaa caaaaggttc atcaaacatg atgagatccg gctccagcgc
    18421 aatcgcacgc gccagcgctg cacgccgcgc catcccaccg gaaagttcag aaggcattag
    18481 tttagccgct ccacgcagcc ccacggcctc cagcttcatc atcaccgtac tatgcaacaa
    18541 tggcgcggga agttgggtat gttcgcgcag tggataggcg acgttgtcaa atacgttcat
    18601 atcagtgaac aacgccccgg actgaaataa catgctcatc cgtttgcgca ctgtatacag
    18661 gcgcgaacga gacatcgccg gaatattctc accatcgaaa aggatctcac catgatctgg
    18721 tgcgatttgc ccgccaatca gacggagtag cgtcgtttta ccgatgcccg atggccccat
    18781 gatcgccgtg atcttccctc gcggcacggt cagggaaata ttatcgaaga tgcagcgatt
    18841 gccacgcgta aaactgacat cgcgcatatc gactaaattc gccacagact gctccataat
    18901 tcacccttcg tcttgcgttg attttctaag catggcgctc aatttaacct tgaacccaac
    18961 atatttacag aatattaccc gccgtggtta gcgaaagctg gcatttgttt tactttttag
    19021 ccgcataaag tcaaaattaa gaatccgtta cggctttctg aaaatcttca gcggaccggc
    19081 gagtatacct gaagaaagga cgttagatgc ttttagctac ggcactgtta attgttggtt
    19141 tacttttggt cgtttacagt gccgaccgcc tggtttttgc cgcgtctatt ctttgccgaa
    19201 cctttggcat cccgccgctg atcatcggca tgacggtggt cagtattggt acatcgttac
    19261 cagaaatcat cgtctcgctt gccgcgtctc tgcacgaaca acgcgattta gccgttggta
    19321 cagccctcgg ctcaaacatt atcaatattt tgctgatcct cggtctggct gcgctggttc
    19381 gtccttttac cgtccattcc gatgttctgc gtcgtgaatt acccttaatg ttgttggtca
    19441 gcgtagtggc cggttccgta ctctatgacg gacaacttag tcgcagcgat ggtatctttc
    19501 tcctctttct ggctgtgcta tggctgctgt tcattgttaa acttgcacgt caggctgaac
    19561 gtcaggggac tgacagcctg accagagagc agcttgcaga gctgccgcgt gacggcggat
    19621 tgcccgtcgc gtttttatgg ctcggcattg cgcttatcat catgccagtg gccacgcgga
    19681 tggtggttga taacgccacg gtgctggcga attactttgc catcagcgag ttgacgatgg
    19741 gtctgacggc aattgctatc ggaaccagcc tgccggaact ggcaaccgca atagcggggg
    19801 gtcgcaaagg tgaaaacgac attgctgtcg gaaatatcat tggcgcaaac atttttaata
    19861 ttgtcatcgt gttgggttta cccgcgctga taacgccagg agagattgat ccattggcgt
    19921 acagtcgtga ctacagcgtg atgttgctgg tgagcattat ttttgcgttg ctgtgctggc
    19981 ggcgctcccc gcaaccgggc cgtggtgtag gggtattatt aactggcgga tttatcgtat
    20041 ggctggcgat gttgtactgg ttatcgccaa tactcgttga ataactggaa acgcattatg
    20101 tcgcacgtag agttacaacc gggttttgac tttcagcaag caggtaaaga agtcctggcg
    20161 attgaacgtg aatgcctggc ggagcttgat caatacatca atcagaattt cacgcttgcc
    20221 tgtgaaaaga tgttctggtg taaagggaaa gttgtcgtca tggggatggg gaaatcgggg
    20281 cacatcgggc gcaaaatggc cgcaacgttt gccagcaccg gtacaccttc atttttcgtc
    20341 catcctggtg aagccgcgca tggtgattta ggcatggtca ccccacagga tgtggtgatt
    20401 gctatctcta actcaggtga atccagcgaa atcacggcct taattccagt gcttaagcgt
    20461 cttcacgtac cgttaatctg catcaccggt cgcccggaga gcagcatggc gcgcgccgca
    20521 gatgtgcatc tgtgtgttaa agtagcgaaa gaagcctgtc cgttagggct ggcaccgacc
    20581 agcagcacca ccgccacgct ggttatgggc gatgccctcg ctgtcgcgct gttaaaagca
    20641 cgcggcttta ctgctgaaga ttttgcgctc tcacacccag gcggcgcact gggtcgtaaa
    20701 cttctgctgc gcgtaaacga tattatgcat acgggcgatg agatcccgca tgttaagaaa
    20761 acggccagtc tgcgtgacgc attgctggaa gttacccgca aaaatcttgg tatgactgtc
    20821 atttgcgatg acaatatgat gattgaaggc atctttaccg acggtgattt acgccgtgtc
    20881 ttcgatatgg gcgtggatgt tcgtcagtta agtattgccg atgtgatgac gccgggggga
    20941 atacgcgtgc gccctggcat tctggccgtt gaggcactga acttaatgca gtcccgccat
    21001 atcacctccg tgatggttgc cgatggcgac catttactcg gtgtgttaca tatgcatgat
    21061 ttactgcgtg caggcgtagt gtaaagattc aaggataaac aacaatgagc aaagcaggtg
    21121 cgtcgcttgc gacctgttac ggccctgtca gcgccgacgt tatagcaaaa gcagagaaca
    21181 ttcgtctgct gatcctcgac gttgatggcg tactgtcaga tggcctgatt tatatgggca
    21241 ataacggcga agagctgaaa gtgttcaatg ttcgtgacgg ttatggcatt cgttgtgcgc
    21301 tcacctctga tattgaagtc gctatcatta ccgggcgaaa ggctaaactg gtagaagatc
    21361 gttgtgccac attggggatc actcacttgt atcaggggca gtcaaacaaa ctgatcgcct
    21421 ttagcgatct gctggaaaaa ctggcgattg ccccggaaaa tgtggcttat gtcggcgatg
    21481 atctcatcga ctggccggta atggaaaaag tgggtttaag cgtcgccgtg gccgatgctc
    21541 atccactgtt gatcccgcgc gccgattatg tgacgcgcat tgctggcggt cgtggcgcag
    21601 tgcgagaagt ttgcgactta ttactcctgg cgcagggcaa actggatgaa gccaaagggc
    21661 aatcgatatg agtaaagcca gacgttgggt tatcattgtg ctatcactgg cggttctggt
    21721 gatgatcggc attaatatgg ccgaaaaaga cgataccgcc caggtggtcg tcaacaacaa
    21781 tgatcccacc tataaaagcg agcatacgga cacgctcgtc tataacccag aaggggcact
    21841 aagctatcga ttgattgctc aacacgttga atattattcc gatcaggccg tttcgtggtt
    21901 tacgcagccg gtacttacca cgtttgataa ggataaaatc ccgacatggt ccgtaaaagc
    21961 agataaagcc aagctgacca atgaccggat gctctattta tatggacacg ttgaagtcaa
    22021 cgcacttgtg ccggactctc aacttcgcag aatcacgacg gataacgcgc agatcaatct
    22081 ggtgacgcag gatgttacct ctgaagacct cgtcacgtta tacggaacaa catttaactc
    22141 cagcggtctg aaaatgcgcg gcaacttacg cagcaagaac gccgagctga ttgaaaaggt
    22201 tagaacatcc tatgaaattc aaaacaaaca aactcagcct taatcttgtg cttgccagct
    22261 cacttctggc cgccagcatt ccggcatttg ccgtaaccgg agacactgat cagccgatcc
    22321 acattgaatc ggaccagcaa tctcttgata tgcaaggcaa cgtggttacc tttaccggta
    22381 atgtcatcgt cacccagggc accatcaaaa ttaatgccga caaagtggtc gttacccgtc
    22441 cgggcggcga acaaggtaaa gaagtgattg acggctacgg taaaccggca acgttctacc
    22501 agatgcagga caacggtaaa cccgttgaag gtcatgcttc ccagatgcac tacgaactgg
    22561 caaaagattt tgtcgttctg acgggtaatg cttatctgca gcaggtcgat agcaacatta
    22621 agggcgataa gatcacttac ctggtgaaag agcagaaaat gcaggctttc agcgacaaag
    22681 gcaagcgcgt aacaaccgtt ctggtgccgt cgcagctgca ggacaaaaac aacaaaggcc
    22741 agaccccggc acagaagaag ggtaattaat tcgttatggc aacattaact gcaaagaacc
    22801 ttgcaaaagc ctataaaggc cgtcgcgtgg tagaagacgt cagcctgacc gtcaactccg
    22861 gggaaattgt cggtctgctg gggccaaacg gtgccggtaa gaccaccact ttctatatgg
    22921 ttgttggcat tgtgccgcgc gatgcgggca acatcattat tgatgatgac gatatcagtc
    22981 tgctgcctct gcatgcacgc gcgcgccgcg gtatcggcta tctgccacag gaagcctcca
    23041 ttttccgtcg cctcagcgtt tacgataacc tgatggcggt actgcaaatt cgtgacgact
    23101 tgtctgctga acaacgtgaa gaccgcgcga acgagctgat ggaagagttt cacattgagc
    23161 acctgcgtga cagcatgggg cagtcactct ccgggggtga acgtcgccgt gtagaaattg
    23221 cccgcgcact ggctgcgaat ccgaaattta ttctactcga cgaaccgttt gccggggttg
    23281 acccgatctc ggttatcgac attaaacgca tcattgaaca cctgcgcgac agcggcctgg
    23341 gcgtactgat cactgaccac aacgtgcgtg aaacactggc ggtttgtgaa cgcgcttata
    23401 tcgtcagtca ggggcatttg attgcccacg gcacgcctac agaaatctta caagacgaac
    23461 acgttaagcg tgtatacctt ggggaagact tcagactctg atagggtaga agtttgcgac
    23521 gttttagcag gagagtacga ttctgaacat gaagcaaggt ttgcaactca ggcttagcca
    23581 acaactggcg atgacgccac agcttcaaca ggcgattcgt ctgttgcagt tgtcgacgct
    23641 ggaacttcag caggagctac agcaggcgct ggagagtaat ccgctgcttg agcaaatcga
    23701 cactcatgaa gaaatcgaca cccgcgaaac gcaagacagt gaaacgctgg acaccgccga
    23761 cgcgctcgaa caaaaagaga tgccggaaga gctgccgctc gatgccagtt gggacaccat
    23821 ttacaccgct ggtacaccat ccggcaccag cggtgactac attgacgatg agctgccggt
    23881 ctatcagggc gaaacgacgc agaccttgca ggattacctg atgtggcagg tcgagctgac
    23941 accgttttcc gacactgacc gcgctattgc tacctctatc gtcgatgccg ttgatgacac
    24001 cggttatctg actgtcccgc tggaagatat tctcgaaagt atgggcgatg aagagatcga
    24061 catcgacgag gttgaagccg tccttaagcg gatccaacgg tttgatccgg tcggtgtagc
    24121 ggcaaaagat ctgcgtgact gcctgctaat ccaactctcc caattcgata aaaccacgcc
    24181 gtggctggaa gaggccagac tgatcattag cgatcatctc gatctgttag ccaatcacga
    24241 cttccgcact ttaatgcgcg tcacgcgtct gaaagaagat gtgctgaaag aagccgtcaa
    24301 tctgatccag tcgctcgatc cgcgccccgg gcagtcgatc cagactggcg aacctgagta
    24361 tgtcattcca gatgtgctgg tgcgtaagca taacggtcac tggacggtag aactcaacag
    24421 tgacagcatt ccgcgtctgc aaatcaacca gcactacgcc tcgatgtgca ataacgcgcg
    24481 caacgatggt gacagccagt ttatccgcag caatctgcag gatgccaaat ggttgatcaa
    24541 gagtctggaa agccgtaacg atacgctact gcgcgtgagt cgctgtatcg ttgaacagca
    24601 gcaagccttc tttgagcaag gtgaagaata tatgaaaccg atggtactgg ccgatatcgc
    24661 ccaggctgtc gaaatgcatg aatcgacgat atctcgcgtg accacgcaaa aatacctgca
    24721 tagtccacga ggcatttttg aactgaagta tttcttttcc agtcacgtca ataccgaggg
    24781 cggcggcgaa gcttcctcca cggcgattcg tgcgctggtg aagaaattaa tcgcggcgga
    24841 aaacccagcg aaaccgttga gcgacagcaa gttaacctct ttgctgtcgg aacaaggtat
    24901 catggtggca cgccgcactg ttgcgaagta ccgagagtct ttatccattc cgccgtcaaa
    24961 ccagcgtaaa cagctcgttt gacccaaccg ataaggaaga cactatgcag ctcaacatta
    25021 ccggaaatca cgtcgagatc accgaggcac tgcgcgaatt tgttagagcc aaatttgcca
    25081 aacttgagca atattttgac cgaatcaacc aggtctatgt tgttctgaaa gtggagaaag
    25141 tcacccacac ctcagatgca acactgcatg taaacggtgg tgaaattcat gccagcgcgg
    25201 aaggtcagga catgtacgct gccattgatg gcttaattga taagctggca cgccagttga
    25261 ccaaacataa agataaactg aaacaacact aattgtccgg gcaattagca tgtgcatggc
    25321 ggcctgttgt gcggcacaac gggccatttg tacggttaat gctccgagcc tgttccactg
    25381 tttgagtggg caggttctta ggtgaaatta tgacaaataa tgatacaact ctacagctta
    25441 gcagtgttct taacagggaa tgtacgcgaa gccgcgttca ctgtcagagc aaaaaacgcg
    25501 ccctggaaat catcagcgag ctggcggcga aacaacttag cctgccgcct caggtggttt
    25561 ttgaagctat cctgacgcgg gaaaaaatgg gcagtaccgg tatcggcaat ggtattgcca
    25621 ttccgcatgg caaactggaa gaagatactc tgcgcgccgt tggcgttttc gttcagctcg
    25681 aaacgcctat agctttcgat gccatcgaca accaaccggt ggacttactt tttgccctgc
    25741 tggtgccggc agaccaaact aaaacgcacc tgcatactct gtcgctggtg gcgaaacgtc
    25801 tggcggacaa aaccatctgc cgccgtttac gcgcagccca gagcgatgaa gagctgtatc
    25861 aaatcattac ggataccgaa ggtactccgg atgaagcgta gttattcggt aatgtctctt
    25921 ttagacgttg tgaggagaaa cagtacatgg tactgatgat cgtcagcgga cgttcaggtt
    25981 caggtaaatc tgtcgccctg cgtgcgctgg aagatatggg tttttactgc gtggataacc
    26041 ttcccgtagt gttgttaccc gatctggctc gaaccctggc cgatcgcgag atttctgccg
    26101 ccgtcagcat tgatgttcgt aatatgccgg agtcaccaga aatattcgaa caggcgatga
    26161 gtaacctgcc tgacgctttc tcaccgcaac tcctgttcct ggatgccgac cgtaatacct
    26221 taattcgtcg ttacagtgac acgcgccgac tgcatccgct ttccagcaaa aacctgtcgc
    26281 tggaaagtgc tatcgacaaa gaaagcgatt tgctggagcc tctgcgttcg cgagcggatc
    26341 tgattgtcga tacctcagaa atgtccgttc acgagctggc tgaaatgctg cgtacccgtc
    26401 tgctgggtaa acgtgaacgc gaactgacca tggtctttga gtctttcggc ttcaaacacg
    26461 gtatccctat cgatgcagat tacgtctttg acgtgcgctt cttgccgaac ccgcactggg
    26521 atccgaaact gcgtccaatg acaggtcttg ataaacctgt cgccgcgttc ctcgaccgcc
    26581 acacagaagt acacaatttt atctaccaga cgcgaagcta tcttgagcta tggttaccta
    26641 tgctggaaac caacaaccgt agctacttga cggtcgccat tggttgtacc ggcgggaagc
    26701 accgttcggt gtatattgca gagcaactgg cagactactt ccgctcgcgc ggtaaaaacg
    26761 tccagtcacg ccatcgtacg ctggaaaaac gtaaaccatg accgtcaagc aaactgttga
    26821 aatcacaaac aagctgggca tgcatgcccg gcctgcaatg aagctgtttg aattaatgca
    26881 gggttttgac gctgaagtgc tgttacgtaa tgacgaaggc accgaggccg aagccaacag
    26941 cgttattgcg ctgctgatgt tggattctgc caaaggacgg cagattgaag ttgaagcgac
    27001 cggcccacag gaagaggaag cactggccgc cgttatcgcc ctctttaact ctggttttga
    27061 tgaagattaa tcttcatcac tttgacatac aactcccttc aaactccccc cgacaataag
    27121 aaaatcacgt actgaaatcg ttctcaatca acgtcatttg tacattttgt gcgcttttca
    27181 ctttcagaag aaccttaaga aaaccttaag aggcattgtt taggttttgt ttaagttaat
    27241 cgaccatact ggagatcgtc agaaaatatt tccaggagat ggcatgattc gcttatctga
    27301 acaaagtccc ctgggcaccg gaagacatcg gaaatgttat gcgcatccgg aagatgccca
    27361 acgctgtatc aagattgtct accatcgtgg cgatggtggc gatggtggcg atggtggcga
    27421 tggtggcgat ggtggcgatg gtggcgatgg tggcgatggt ggcgataaag agatccgccg
    27481 tgagttaaag tactacgcgc atcttggtcg ccggttaaaa gactggagtg gaataccgcg
    27541 ctatcacggt accgttgaga cggattgcgg aaccggttat gtctacgatg tgattgcaga
    27601 ttttgacggc aaaccctcca ttacgctgac cgaatttgct gaacaatgcc gttacgaaga
    27661 agacattgca caactgcgcc agcgactgaa acagctgaag cgttatttgc aggataaccg
    27721 tatcgtgacg atgtcgctga agccgcagaa tatcctctgt caccacatca gtgagtcaga
    27781 ggttatcccg gtcgtctgcg acaacattgg tgaaagcaca ttgattccac tggcgacctg
    27841 gtcgaagtgg tgttgtctgc gtaagcaaga gcggttatgg aaacgattta tcgcccaacc
    27901 ggcgctggct attgccctgc agaaagatct gcaacctcgt gagagcaaaa cgctggccct
    27961 cacttcgcgc gaagcttaat ccagctggtg ttgttgcata aacggctcac cgcctaactg
    28021 atacatctgc cgtaaaatcc acgcctgacg gctacgcacg tagcccgatg gcgaggagac
    28081 tttgaaacga agtggattag gtaatacagc tgccagtaat gcagcttccg accgggtaag
    28141 tttgctcgcg ggtttgtgga aataacgttg tgccgcagct tcgacgccaa acacaccgtc
    28201 gccaaattcg gcgatattca ggtaaaccgt caggatacgc tttttgctcc agactatttc
    28261 tatccccagc gttaatccag cttccagccc ttttcgtacc cagctacgcc catcccataa
    28321 aaagagattt ttggccgtct gctgagaaat cgttgaagca ccgcgaatac ggttttcatt
    28381 gcgctcgttg tgcgccaggg ctttctcaat ggaagcgaca tcaaagcccc agtgctcagg
    28441 aaatttctga tcttctgcgg caatcaccgc cagtcccatc cacggcgaga tttgatccat
    28501 actgacccag tcagaatgtg ccacgtaacg aaaattgcca tgcagctagg cgctgacctg
    28561 tcgctcgacc attaccgctg agaagggaac aggcgcaaca ctaaacaacg cgatgccccc
    28621 gccccagaaa acggcgagga caaccattaa ccgcaaaaga aaacggcgaa cgaaactaaa
    28681 caccgttaag cggcttttac tcattcagcc agaaccagca cgcgggaaac cagcttatca
    28741 atgccgctcg ccgcttctgc aatgttctgc gccagcatat atgctggggt ggtgacaatc
    28801 ttattgtctt catcaaccac gatatcatcg acaggacagg gcacatgctc cgcgcccatc
    28861 tcttccagca cttctgcggt atcgatatca gtaccgatgg tcaaacgcag cgggaaatcg
    28921 aaaattttcg gcagcatcgc cggggcaata cacataaaac caagcggttt tccggcctga
    28981 tgcatcgctt gtgccagcgc ctttaattca cggtcaacgg tgcattcgct accaagagtg
    29041 gcaaaattgc ttaaattctt cgccgcgcca aacccccccg gcacaatcaa cgcatccagt
    29101 tcagcggcat cggcctgggc cagaggacgg atttcaccgc gcgttattcg tgccgcttca
    29161 atcagcacgt tgcgcgtttc cgtcatcgct tcgccagtta aatggttgat aacatcaacc
    29221 tgctgcttat ccggtgcaaa gcagaccgcc tgcgcaccgc tgcgtgaaat agctaacaac
    29281 gtcaacaccg cttcatgaat ttcagaaccg tcatagacgc cgcatccgct cagaattacg
    29341 ccaattttct tcattgtgat catcctttcg caattgactg aaacacatta atttttttaa
    29401 taaaaatggt acgcatcaca catttaactg attcatgtaa caaatcattt aagttttgct
    29461 atcttaactg cgtgcggcct gaaaaacagt gctgtgccct tgtaactcat cataataatt
    29521 tacggcgcag ccaagatttc cctggtgttg gcgcagtatt cgcgcacccc ggtctagccg
    29581 gggtcatttt ttagtggctt ttgccaccca cgctttcagc acttctacgt cgtgacgcca
    29641 ctcttctttc atctcttcaa tccattcacc gacgttatct tcccaggcag gaaggtcagg
    29701 agactgaatt tgctgaccca gctgttgcag atggcgtaac cccactgacc ccgccgcacc
    29761 tttaatttta tgtccttcct caacaatgcc ttttttatcc tgcgccgtca gattcgactc
    29821 cagcacgctg acatagcccg gcatcatctt ctcaaacacc gctaacccgt cggtgatcag
    29881 cttcggtcct acaagttcga gatactgttc cagcatggga atatcgagca atgcttctga
    29941 tttactgttc tcttctgtcg tcaccgtact ctcctcatca tcctgggtat cccagaattt
    30001 cttgatcatc gcggttagcg ccggaaccga aagcggctta ctcagcacat catccattcc
    30061 agcattgagg tactcttgtt tgtctttcag cacgttagcg gttaaggcca ccagcggcgg
    30121 taaatcctcg cgcggataac gcttcgtcag ttcacgagag atatccagcc cggtcatatc
    30181 tggcaactga atatccagca acaccaggtc gtattcgccc ggtttaaaca tctccagcgc
    30241 cgccttgccg gtcatggcga catcaacgct gttacctaat ttttccagca cagaacgcgc
    30301 aacaatcacg ttcagttcaa tgtcttccac cagcagcaca ttcagcgccg gtaaaggcat
    30361 atcgtcttca tcaaacgcat catcgacctc ttctgctacc gacggtgcgt ggatcgtcaa
    30421 cgtaaaggtt gaacctttgc cctgttcgct ggtaaccgta atatcgccgc ccatattttt
    30481 cgccagacga cgagaaacgg ccagaccaat accggtgccg gtggcaggtt taccgccatg
    30541 actgtctttc acctggtaat acatggcgaa aattttatcc agctcatcct gcggaatgcc
    30601 gataccagag tcttccactt caaaatgcag catatcgcct tcatcgtagc gcacgcgcac
    30661 ggtaacctgg ccttgctggg tgaatttgac ggcgttactg atgaggttcc acaggatctg
    30721 ccgtaaacgc gtcccgtcgg taatgacctg atgcggtaat ggcagcgtcg gctccaggtt
    30781 aaagcgcaat cctttttgtt gcgcctgcaa tgcggagaga ttttccagat cggcaaggaa
    30841 gctggtgaaa tcaaccggtt gattatcaag ctggaccttg cgccgttcca tcttatccat
    30901 gtcgataata tcgttaaaga tattccccag cgtgacggcc gaaacatgga tggtcttgag
    30961 atatttttcc tgctcggcgg tgagttcggt atccagcaga atgcggctca gaccgacgat
    31021 accgttcagc ggtgtacgca attcgtgact gatggtggag ataaacgtcg ttttgtcgcg
    31081 gctggcccgt tcaagcgcat cctgataccg cttacgctcg gtaatgtcgc gaccaaagcc
    31141 catcaaaccg tgacgtttac ccacgcggtc gtagtacggc actttacgga tttcaaagca
    31201 ggctttgcgc ccgtccgggt aatccagcca ctgttcatag gtcagtgaca cattatgacg
    31261 gaacactttt tcatcggttt caatgacttt tgcggcggct tccggtgagt aaacatcagc
    31321 aggtttcagg tgaaccagtt gtttttcgct ttttccggtc agcagctcca tcgcgcggtt
    31381 acagccggaa aactctttat cttcgttacg ataaaaaacc aggtcgggtg aagcatcaag
    31441 gaaggaacgt aagaatgagg attgctgctc gagctgaatt tgtgtctctt cgcgctcttt
    31501 gatttcaatt ttcagttggc cgaaggtttc ctgcagttct gcttccgctt tttcacgaac
    31561 ggcaatttcc tgatttagct gggcaatatt atcttttaac tgaacgttga ggctcaaatc
    31621 gcgctcgcgc atctcctcca gtttttgcac cagccgtgac agacgttgtc gtgactcctc
    31681 cagttgctcg acgaccaccg atagaaagta gaccgcccac ggcgtaatca gcaaaccaaa
    31741 gaagatagaa cgaataacat caatgctttc gacctgacca tgcagcacca tggttaccgc
    31801 catttgtacc acaatggcaa gaacgacgag ggccagcgcc agcaacattg agaagcgcac
    31861 cagacctaac ttcatcatca ggtcaacata atactgcgcc agcagacgaa tttgcttcat
    31921 tagggaattc cttcacgaca acctgcccca ataataccca attctgacag ttacgttata
    31981 aattgtgtga gaaatgcgga attcccctca acgacctact ccgttggagg tagccacgga
    32041 cgtcccagcg ccgatccctg tacgccatgt tcattcagat agcgatccag ctcgaccatt
    32101 cccgtccatc gattttcgca ccacagcgga gcaagcagcg tcgggcgacg ggcgctggcg
    32161 gaaatgcggt ggtagatcac ttccggtggc gtatggcgaa tcatttctcc ggcagtgagc
    32221 gtgtaatcct cctgttcaat accgttcaaa cgccccgctt cccaggcttt cgccataatg
    32281 ctgcctttca caatatgcag cggatgcagc tttatgccgt ccacgccggt ttcaaccact
    32341 cgctccagcg tttgcaaaca ttcagcctgc ccttcgccag gcaggccgac aattaagtgg
    32401 gaacacacct tcagcccgcg ctgacgtgcc agctgggttg tacgctgata acaggcaaaa
    32461 tcatggccgc ggttgatgcg atgcagtgtt ttgtcgtggg cggtttgtag ccccagctcc
    32521 agccacactt cgtaaccctg gtccttatat tcgcaaagca gatccagcac cgcatccggc
    32581 acgcagtccg ggcgggtacc aacacacaaa ccgacaatat tggcctggct caccgcctgc
    32641 tgatacatag aacgcagcac ctgaacttcc gcaaaggtgc tagtatacgc ctgaaagtag
    32701 gccagatagc gtttagcgcg gttaactaaa ttcgcctggt gcgccagttg ctcggcaatg
    32761 gaacgatgct gctgcgcttc atcggcaaac gaggcaacat tacagaatgt gcagccacca
    32821 cgcccgatgg taccgtcacg gttagggcag ctaaaaccgc cgtgcagcgt cagcttatgc
    32881 accttttgcc cataacgacg ggtgagatca ccaccaaaca tattgactaa tttctgtaac
    32941 tgcataatct gatagaccgc gccttgaaaa gaggccaaag cctgccattt ttagctcaat
    33001 tcggcgatga cctggatcaa tcgtcccggc ctgcttttat caactgcata atcaatcaaa
    33061 attaccgaag tttcatgcat aatcacataa atcacttttg cttatcttgt gtcagatttt
    33121 tttatctcct tatggatttt aggcaaaaac agtagcatga aacgtcatta ccaattaagg
    33181 cagtataaaa tgctggtttt atcgtcagtt caaggcagga taagggttaa cacgccttta
    33241 tgacagtcag gaattgactg tttctctaac gacttccctt ttagccttaa agataaaatt
    33301 cattttaatt tcagtcgctt aataaagaat tttgcgctaa agcacatttc tgtaccaata
    33361 agcttgccat ttgacctgta tcagctttcc cgataagttg gaaatccgct ggaagctttc
    33421 tggatgagca gcctgctcat catatttatg cagtaattga gatcccctct tcaccgtatt
    33481 aaccgatgcg aaaaggacaa caagggggcg aatgcgaggc gcgcgtatga cacgcaaccc
    33541 ccgtcgccac gctctttctg tgcccgtgcg cagcggttcg gaagtggggt tcccgcagag
    33601 cctgggggag gttcacgata tgttgtacga taaatccctt gagagggata actgtggttt
    33661 cggcctgatc gcccacatag aaggcgaacc tagccacaag gtagtgcgta ctgcaataca
    33721 cgcactggcc cgcatgcagc accgtggcgc gattctcgcc gatggtaaaa ccggtgacgg
    33781 ttgcggcttg ctgttacaaa aaccggatcg cttttttcgc atcgttgcgc aggagcgcgg
    33841 ctggcgttta gcaaaaaact acgctgtcgg gatgctcttc ctgaataaag atcctgaact
    33901 cgcggctgcc gcacgccgca tcgttgaaga agagctgcaa cgcgaaacct tgtcgattgt
    33961 gggctggcgt gatgtcccca ctaacgaagg cgtgctgggt gaaatcgccc tctcctctct
    34021 gccccgcatt gagcaaattt tcgttaacgc tccggcaggc tggcgtccgc gggatatgga
    34081 gcgccgtctg tttatcgccc gccgccgcat tgaaaagcgt ctcgaagccg acaaagactt
    34141 ctacgtctgt agcctgtcga atctggtgaa catctataaa ggtctgtgta tgccggcgga
    34201 tctgccgcgc ttttatctgg atcttgcgga cctgcgtctg gaatcggcca tctgcctgtt
    34261 ccaccagcgc ttctccacta acaccgtacc gcgctggccg ctggcgcagc cgttccgcta
    34321 cctggcgcat aacggtgaaa tcaacaccat caccggtaac cgccaatggg cgcgtgcgcg
    34381 tacctataaa ttccagacgc cgcttatccc tgatctgcac gacgccgcac cgttcgtcaa
    34441 cgaaaccggc tctgactcca gttcgatgga taacatgctg gaactgctgc tggcaggcgg
    34501 gatggatatc atccgcgcca tgcgtctgtt agtgccaccc gcctggcaga acaacccgga
    34561 tatggacccg gaactgcgtg ccttctttga ctttaactcc atgcatatgg agccgtggga
    34621 tggcccggcg ggcatcgtga tgtccgacgg tcgttttgcc gcctgtaacc tcgaccgtaa
    34681 cggtctgcgt ccggcgcgct acgtcatcac caaagataag ctcatcacct gcgcctctga
    34741 agtcggtatc tgggattacc agcctgacga agtggtcgaa aaaggccgcg tcgggccagg
    34801 cgaactgatg gttatcgaca cccgcagtgg gcgtattctg cactcggcag aaaccgatga
    34861 cgatctgaaa agccgccatc catataaaga gtggatggag aaaaacgtcc gccgactggt
    34921 accgtttgaa gatctgcccg atgaagaagt gggtagccgc gaactggacg acgacacgct
    34981 tgccagctac cagaaacagt ttaactacag cgcggaagag ctggactccg taattcgcgt
    35041 actgggcgaa aacggtcagg aagcggtcgg ttcgatgggc gatgataccc cattcgccgt
    35101 gctctccagt cagccgcgca ttatttacga ctacttccgc cagcagtttg cccaggtgac
    35161 taacccgcca atcgacccgc tgcgtgaagc gcatgttatg tcgctcgcca ccagtatcgg
    35221 tcgtgaaatg aacgtctttt gcgaagcaga gggccaggcg caccgtttaa gctttaaatc
    35281 gccgattctg ctctactccg atttcaaaca gctcacgacg atgaaagagg agcactaccg
    35341 cgcagatacg ctggatatca cctttgacgt cactaaaacc acgctcgaag cgacagtcaa
    35401 agagctgtgc gacaaagccg aaaaaatggt acgtagcggc accgtgctgc tggtgctctc
    35461 cgaccggaat atcgctaaag atcgcctgcc ggttccagcc ccgatggcgg ttggcgcgat
    35521 ccagacccgt ctggtcgatc aaagcctgcg ttgcgatgcc aacatcatcg tcgaaaccgc
    35581 cagcgcccgc gatccgcacc acttcgccgt gttgctgggc ttcggcgcga cggctattta
    35641 tccatacctt gcctatgaaa cgctgggccg cctggtagac acccatgcga ttgccaaaga
    35701 ttatcgtacc gtgatgctca actaccgtaa cggcatcaac aaaggcttgt acaaaatcat
    35761 gtccaaaatg ggcatctcca ccatcgcctc ttaccgctgc tcgaaactgt ttgaagcggt
    35821 cggtctgcac gatgatgtag tgggcctgtg cttccagggg acggtcagcc gcattggtgg
    35881 ggcgagcttt gaagacttcc agcaggatct gctgaacctg tcgaaacgtg cctggctggc
    35941 gcgtaagccc atcagccagg gcggcctgct gaaatacgtc cacggcggcg aataccacgc
    36001 ttacaacccg gacgtggtgc gcacgctgca acaggcggta caaagcggcg agtacagcga
    36061 ctatcaggaa tacgcgaagc tggttaatga gcgtccggca accacgctgc gcgatctgct
    36121 ggcaattacg ccgggtgaaa acgcggtcaa cattgctgat gttgaaccgg caagcgaact
    36181 gtttaaacgc tttgataccg ccgcgatgtc tatcggcgcg ttaagcccgg aagcccacga
    36241 ggcgctggcg gaagcgatga atagcatcgg cggtaactcg aactccggtg aaggcggcga
    36301 agacccggcg cgctatggca ctaacaaagt gtcgcgcatc aagcaggtgg cttctggtcg
    36361 cttcggcgtt actccggcgt atctggtcaa tgccgacgtc attcagatta aagtcgccca
    36421 gggcgcgaag ccgggcgaag gcggtcagtt gccgggtgac aaagtcactc cttacatcgc
    36481 caaactgcgc tattcggtgc ccggagtgac gctgatctcc ccgccgccgc accacgatat
    36541 ctactctatc gaggacttag cgcagctcat tttcgacctc aagcaggtta acccgaaagc
    36601 gatgatctcc gtgaagctgg tttccgaacc gggcgtaggc accatcgcga ctggtgtggc
    36661 aaaagcttat gccgatttaa tcaccatcgc aggctatgac ggtggcaccg gcgcaagccc
    36721 gctgtcgtca gtgaaatacg caggttgccc gtgggagctg gggcttgttg aaacccagca
    36781 ggcgctggtt gccaatggtc tgcgtcataa gatccgtttg caggtcgatg gcggcctgaa
    36841 aaccggtgtt gatatcatca aagcggcgat tctcggcgca gaaagcttcg gcttcggcac
    36901 tggcccaatg gtcgcgctcg gctgtaaata tctgcgtatt tgccacctga acaactgcgc
    36961 aacgggtgtg gcaactcagg atgacaaact gcgtaagaat cactatcacg gcctgccgtt
    37021 caaggtgacg aattactttg agtttatcgc ccgtgaaacc cgcgagctga tggcacagct
    37081 gggggtaacg cggctggtgg atctgatagg tcgcaccgac ctgctgaaag agctggacgg
    37141 tttcaccgcc aaacagcaga aactggcgct gtcgaagctg ctggagaccg ccgaaccgca
    37201 tccaggtaag gcactctact gcaccgaaaa caacccgccg tttgataacg gcctgctgaa
    37261 cgcgcagttg ctgcaacagg cgaaaccgtt tgtcgatgaa cgccagagca aaaccttctg
    37321 gttcgatatc cgcaataccg atcgctccgt gggcgcgtcg ctttcaggct atatcgccca
    37381 gacgcacggc gatcaggggc tggcagccga tcctatcaaa gcgtacttca acggcaccgc
    37441 aggccagagt ttcggtgtat ggaacgcggg cggcgtggaa ctgtacctga ccggggatgc
    37501 caacgactat gtcggtaaag gcatggcggg cggcttaatc gccattcgtc ctccggttgg
    37561 ttccgccttc cgcagccatg aagcaagtat tatcggcaac acctgcctgt atggcgcgac
    37621 cggtggtcgt ctgtatgccg caggccgcgc gggtgaacgt ttcggcgtgc ggaactccgg
    37681 tgctatcacc gtggtagaag gcattggcga caacggctgt gaatatatga cgggcggtat
    37741 tgtctgtatt ctgggtaaaa ccggcgttaa cttcggtgcg ggcatgaccg gcggcttcgc
    37801 ttacgttctc gatgaaagtg gtgatttccg caaacgcgtt aacccggaac tggtcgaggt
    37861 cttaaacgtt gacgatctgg cgatccatga agagcatctg cgcggtctta tcactgagca
    37921 tgttcagcat actggctctc agcgcggtga agagattctg gcgaactggt caaccttcgc
    37981 cactaaattt gcgctggtta aaccgaagtc cagtgatgta aaagcactgc tgggtcaccg
    38041 tagtcgtagc gcagcagagt tgcgcgtgca ggcgcagtaa ggggtagcaa caatgagtca
    38101 gaatgtttat caatttatcg acctgcagcg cgttgatccg cctaagaaac cgctgaagat
    38161 ccgcaaaatt gagtttgttg aaatttacga gccgttttcc gaaggccagg ccaaagcgca
    38221 ggctgaccgc tgcctgtcgt gcggcaaccc atactgcgag tggaaatgtc cggtacacaa
    38281 ctacatcccg aactggctga agctcgccaa cgaggggcgt atttttgaag cggcggaact
    38341 gtcgcaccag accaacaccc tgccggaagt ttgcggacga gtctgcccgc aagaccgtct
    38401 gtgcgaaggt tcctgcactc tgaacgatga gtttggcgcg gtgaccatcg gcaacattga
    38461 gcgttatatc aatgataaag cgttcgaaat gggctggcgt ccggatatgt ccggcgtgaa
    38521 gcaaaccggt aaaaaagtgg cgattatcgg cgcaggcccg gcaggtctgg cgtgtgcgga
    38581 tgtcctgacg cgtaacggcg taaaagccgt tgtcttcgac cgtcatccag aaattggcgg
    38641 gctgctgacc ttcggtattc cggccttcaa gctggaaaaa gaggtaatga cgcgtcgccg
    38701 tgaaatcttc accggcatgg gtattgaatt caaactcaat accgaagtgg gccgcgacgt
    38761 gcagctggac gatctgctga gtgattacga tgccgtcttc cttggcgtcg ggacttatca
    38821 gtcaatgcgc ggcgggctgg aaaacgaaga cgccgatggc gtgtacgcag cgctgccgtt
    38881 ccttatcgcc aacaccaaac agttaatggg ctttggtgaa acccgcgacg aaccgttcgt
    38941 cagcatggaa ggcaaacgcg tggtggtcct tggcggtggc gacactgcga tggactgcgt
    39001 gcgtacgtcc gtgcgccagg gagcgaagca cgttacctgt gcctatcgtc gtgatgaaga
    39061 gaacatgccg ggttcccgcc gcgaagtgaa aaacgcgcgg gaagaaggcg tagagttcaa
    39121 attcaacgtc cagccactgg ggattgaagt gaacggtaac ggcaaagtca gcggcgtaaa
    39181 aatggtacgt accgaaatgg gcgaaccgga tgccaaaggc cgtcgccgcg cggagatcgt
    39241 tgcaggttcc gaacatatcg ttccgggaga tgcagtgatc atggcgtttg gtttccgtcc
    39301 acacaacatg gaatggctgg caaaacacag cgtcgagctg gattcacaag gccgcatcat
    39361 cgccccggaa ggcagcgaca acgccttcca gaccagcaac ccgaaaatct ttgctggcgg
    39421 cgatatcgtc cgtggttccg atctggtggt aaccgctatt gccgaaggtc gtaaggcggc
    39481 agacggtatt atgaactggc tggaagttta agctctgtcc cagcgccgcc tcctcagaaa
    39541 agagtcggcg ctgaaattct cctttctttc tggaaagcgc ctcgcataat ctgaagaaaa
    39601 ccaatgtaat acgctcatct ggattgttac cggtagatgc ccggcgtata gctgattcca
    39661 ttattcaacg cagcgccata taaagggaca gataatggaa tcgctctcag agagaacctc
    39721 aacaggctac cagcaaatcc acgacggtat tattcacctg gtcgatagcg cccggacgga
    39781 aacggtacgt agcgttaacg cgctgatgac cgcgacatac tgggaaattg gccgacgaat
    39841 tgtcgaattt gaacaaggtg gcgaggcaag ggctgcgtat ggtgcgcagc taatcaagcg
    39901 actatcaaag gatttaagtc taaggtataa gcgtgggttc tctgcaaaaa acttacgcca
    39961 aatgaggctt ttttacctct tttttcaaca tgttgaaatt cgccagacag tgtctggcga
    40021 attaacacca ttgggaattc cgcagacacc atctgcagaa ttcccatcgg caaagatttg
    40081 gcagacgctg tctgccaaat tgagaggctg tttgatattt ccacagcttt tgtattgcat
    40141 ctcctatttt cggtttgtat attcatgcaa ataaacgaag gaaagttgcc atgatttaca
    40201 ttgaacagct tgaattaatc cataaaagtg gtgatgtgtt gtatccagta aaaataacca
    40261 gaaaatcatc aggaaaaact gccttccatc ttgttccatt cggcttaaat aagactcacg
    40321 accttctaga ggtggaagat gcttcagaag caattcggct ggtgattgat gaacgtcatt
    40381 ccattcgctg cagtacactt acagcaacta ttacgaataa aaagggcaag cgaattaagc
    40441 ggacaggtat atacagtatc aagggtgtta acataaaaga atacaacgtc aggtaatggc
    40501 acagagcggt ccgtcagttc aggtttggct ctgtgccaaa gatgggtcag gtcacacctg
    40561 atctaataaa tttaagccat taaatcagcc ttaaccttca ccaccacctt tttaatctca
    40621 cccggctcgc cgacaacgca tcctggttta tgcggttcac ttggcataaa cacggcgaac
    40681 attcccggtt ttaagatgat ggcttgctcg ttatcaatgg tgctgcaaag ctgataatca
    40741 tcctcatggt ggaactcttc acactggcgc gcagtgcctg ccatgccaaa cagaatccgt
    40801 tcctcaccgt ttaataacag ctggatatca atgtattgct cgtgcaattc cgcttttttc
    40861 tcgacgggcg attgagtgtt aaacgtcatg acattcataa agatattgtc gccctgtaat
    40921 tcgtaacgac ccggcgcttt ttcttgcggt ctggcagcta atgccagcgt taacgcgtcc
    40981 tgtaacgcag gatgtaaccc agcagacggt aatgactgta cttcacccat catcataatt
    41041 tttctccctg ggccaacagc gcagccccaa gtaaacctgc atcgtggcgg tagtgcgccg
    41101 ccagtaaatc aacatgaaat gccgctggct cctgcgccag atacgtttcc accaacgcca
    41161 gatacccttc tgccagacca acgctgccac cgaccaccac gcactggcaa tcagttgtgg
    41221 ctttaatatc agcgatcagc cttgccagca catgtgcgga gcggtgaatc agttgctgcg
    41281 cctgctcgtc gccctgcccg gcgcgtgtga aaatagttct cgcatccgcg cccatgagtt
    41341 caccttgcgc tgccgctgca ataccgcgac cagaagcaat cgcttccacg caacctgtgc
    41401 gtccacagcc gcagactggg ccgtgtggat cggcaagcgt atgcccgatg tgccccgcca
    41461 gaccgctagg gccggtaagc agtttaccgc cgctcactac accgccgccg acgccagtgg
    41521 aaacggtgat aaacaccata tcggttatat cgccttccag cgcctgatac tctgcccatg
    41581 ctgcggcctg cgcgtcgtta atggcaatgg tcggcaaatt ggaaagttgt tccagcgttt
    41641 tgactaacgg aaagtgtagc aatccaccaa gattatgcgg attcagcgcc agcaagctgc
    41701 cgtcgcgaat aattccggtt gaagcgatgg caacctgctg cgcatgagct tgcaacgggg
    41761 cgactaacgc ggctaaggca tcacgcaacg cctgcggagt ctggctggct ggtgtcggaa
    41821 gttctcggcg atcgcggatc tgcccgtcag cgccaatcag cgcggcggca agtttagtac
    41881 cgccgatatc aatcgccaac gtggtcatag caccgccttt ttcatcgctg tgttgtacca
    41941 ctgacaaatg tgttcaagac gcgtaatggc agaaccgacc gtcaccgccc acgcgccgtg
    42001 gcgcatcgca tctgccgcct gagcaggcgt gttgtaacgc ccttcggcaa tcacccgaca
    42061 tccggcgtcg ctcaacgttt tcaccagcgc cagatccggc tcttctggcg tttcaggcgt
    42121 ggtatagcca gaaagcgtag tgccaataat ttcggctccc agcttttggc atgccaggcc
    42181 gtcttccggc gttgagcagt cggtcatcgc cagtaaaccg tgatggtgaa tacgtgccag
    42241 cagcgtttca acaggcaccg gacgcgggcg gtcggtgccg tcaatggcga taatgtccgc
    42301 gcccgcctgc gccagcgcat caacatcttc aatataggcc gtgatgcgta ccggagaatc
    42361 ctccagatcg cgtttcacaa ttccaataat cggcacgctc accaccgcac gcgtggcttg
    42421 cagatttgcc acaccttcaa tgcgaatggc aaccgcgccc gcctgttctg ccgctaatgc
    42481 catggcagcg acgatttcgg gtttatcgag cgggctgtcc ggaaccggct ggcaggagac
    42541 aatcaggcca ccgttagcag cgattttttg atccagttgt gcaagtaacg acatacatct
    42601 tcccttagcg aaaggcccgg tacagagacc gggcaacagg attaactttt ggttttgact
    42661 aaatcgtttt tggcgctgcc aaatggcacg gcaccgctaa atggtttgcc gtcgatagcg
    42721 tcatgagtac gcaatgcttc cgggcgcagc caacgctgaa cgcgggaagg catatccaga
    42781 ccaatcagca ggatcaccac aaatgtcaga ctgaacgata gcgatgccag cgcagtaccc
    42841 agatccagac gttgagcgat caacgcgccg atgattgggg ccagtgcgcc gcccaatgcg
    42901 ccaacgttgt aggtaaagcc caagcccgct gcacgctggt cggtatcgaa ataaccgcca
    42961 atcagtttcg gtaagatccc ggcgatccct tgtccaagca tttgctggaa gaacagtaac
    43021 agaccgagca cccagacgtt tgcgccgcca atcgcaaata ccggaataat caacagctgc
    43081 gaggccaaca ggctacaaac gtaggctttg cgggttccca gccagtcacc gaggaagccg
    43141 ccgacacagc accccaccgc agccccaaag ccgctaaaga acagcacatt ggcaacagta
    43201 tgcgggttat aagccagatc ggttttcaga tacgttggca gcagcgcctg aatcggccat
    43261 gagtagagga aagcaaacaa cacgaccacc atcagcatta cgcccgttgg ccagcgttta
    43321 cccgtacttt gcaccataaa gctgataaag attgcggcgc ataacagccc aagaacagcg
    43381 acgatcgcgg cattttgcag gttaccggcg aagcaaaacc acagcgcagt agccgccgcc
    43441 agtgtcatta cgatattggc aatgcgatgt tcaccacggt agagaatatc taccatcgtg
    43501 cgtactggtg ctttacctgc atgtttctct ttccagtctt ccgcttccgg gatgttttta
    43561 cgcagccaga gagcaaagat gataggcaaa atgccgataa agaacagcgc acgccagccc
    43621 cagaccggaa ccaccaggct atagacctga gcggcaacga cggcccccac agagaagcct
    43681 gaaatcagaa aaccactggc tttgttacgc agatgttttg gccagctttc aatgacatag
    43741 gtggcgctgg aaccgtattc acccgccatc cccatgccga tgaccagacg cgcgataaac
    43801 atggtgatgt agcctggcgc aaagccgcag gccagcgtcc cggccgagaa gagaacgatg
    43861 ctggtgacca ttgccagacg acgcccgtag cggtcaccca tagcgccgag catcaggccg
    43921 ccgaaccagc gagagataaa ggctgcggag atcagacttg ccgcctgcac cgtcgtcagc
    43981 ccgaattcac cctgtacttc ggtgagtacc agggcgatta aaacgaaatc aaaaccgtca
    44041 agcagatatc ccaaccaggc agcggaaaat gcgcgccatt gtgcacggtt gagatggcga
    44101 taccacggga tattctgggt tgtagtactc attgtgagtc tcccgcggtg ggcgatgccc
    44161 acacgctttg gtataaaaat tgtagggtac agatgcgttt atttcccctc acccggtagg
    44221 ggcgagcgag gggaaacaac tcacccgcgc tcttgcatca actgctgggc cagcgccttc
    44281 agttctggca gatatttttc atctaccggt ccaaacggtt tgcggcacag cggcacagaa
    44341 acgacatcca tataatggag gacagttttc aggccgcgga atacgcccgt tttgatcagt
    44401 aaatcaatga ctttattgca ttcagtttgc agtttctgcg cggtctggat atcgccttct
    44461 ttcagcgcct taacgatccc ctgatagcgc cagcccatga tgttgtaggt actaccgata
    44521 ccaccatcag cgcccgccag cagaccagag gcgaagattt cgtcgtaacc gttatagagc
    44581 acaagatcag gatgttcacg acggatctgc tccatctgat agagatcgcc agaggtctgt
    44641 ttcagcgcac ctacgccagg caatgtaaca agtgtgttga tctgatccag ggtcagtttt
    44701 accccactca gggctggaat gttgtacacc accatcggca aaccatccgc cgaatcaata
    44761 attgccagat agtgatcgca gtgttcttca aagctgaaag gatagtagaa cggcgtgacg
    44821 gcggagacgg catcgaagcc ataacgttta gccgatgccg caagttgttg gctttcggcg
    44881 gtgctgacgc aaccgacgtg ggcgatgagt ttaatcttac ctttcgcctc ttcggcgacg
    44941 atttccagta cctgttcacg ctcggaaagg ctttgtacaa aggcctcgcc ggtcgaacca
    45001 cccacgtata aaccgtcgat gccctgctga atattgaact gaaccaggcg acgcagactc
    45061 gctttatcca gcgcttgttg ttggtcaaaa ggagtcagga gtgcagccat tacgccacgt
    45121 aaattcgttg ccataaatac ctctgaagtg atgcttatct gataaacgat atacctttat
    45181 acctattata ccagatcaat taagcaacac cccatacaga aagcttataa tgcgatctgc
    45241 ttcactaaag tggcattatt tctttttgtt ggtggtctga ccgaaagcgt gccaggtagc
    45301 agagacgctg ttgagatgcg attgcaacgc acgatcggct tcgtcaggat catgacggcg
    45361 gatcgcatca acgatcgcaa tatgctgttg ataactaacg ttgttatgtt cgtgtagtgc
    45421 ctgatcggta accgttgggc gtgcggcaat aagccagtcg agcagggcaa cgtggatcgc
    45481 catgaagatt gggttaccgg ggatctccgc cagcacgcgg tggaaatcaa cgtctgaacg
    45541 aatgaatgcc gcgttgttat ccagcgactg actgttgatt tccagtgctt ttgccagcaa
    45601 atcgatttgc tcatcggtgg catgttcagc cgcatagcgc accagactgg attcaaagaa
    45661 cagacgtaat tgttcgaaat gggcaatccc accgggatga gaaaggaaat ctttcgccat
    45721 gccggaaagc tcaccgatga tagtgtccgc agaaggacgc gagacgcgag cgcgttcgcc
    45781 gttgtttatt tgcaccagac ctttgcgttt taacgctgcc agcgcttcac gcaccgaagg
    45841 acgcccgacg ttaaagaacg ccatcagttc gcgttcagac ggtaattgtt caccttcgcc
    45901 aaattcacga cggcggatca tctgttccag ctcttcttcc accatttcgg agagtttttt
    45961 acgcgccagc gggcggctac gcaagttgcg accaattgca ggtgaagaat cttcggtttg
    46021 cgaatcaaat gcgttcataa ggcccattct gtaaggtcag tgtgattaac atcatcagtg
    46081 acatcctatc acaggattga aagtagggga aaatggcagg tttttctctt tgtgcctcat
    46141 cattaccata attaacggaa taattaacta ttgcgaaaaa ttaatgtaac gcagataaaa
    46201 acatcccgtt tgaattattt ataagactat tcacgagcat tatgaatatt atgaatgcgt
    46261 tcttgcaaaa taatcataag tgcatatttt ttaatgaaaa attacctcac ttacaattaa
    46321 aaacacgaca tccgcaccat aaatagactt gcaaaaaata taacatcatt gttttcaatc
    46381 tgccgtttat gggattgacc gttttctttt gacacggagt tcaacaatgt tcggcataat
    46441 tatatctgtc atcgtattaa ttacgatggg ctatttgatc ctgaaaaact acaaacctca
    46501 ggtggtgctg gctgccgcag gtatcttcct gatgatgtgc ggtgtctggt taggggtcgg
    46561 tggtgtactc gatcccgcca aaagcagcgg ctacttgatc gtcgatattt ataatgaaat
    46621 cctgcgcatg ctgtccaacc gcattgccgg attggggcta tcgattatgg cggtgggcgg
    46681 tatgcccgct acatggagcg cataggggcc agtcgcgcga tggtgagctt gttaagccgc
    46741 ccgttaaaac tcattcgctc accgtatatt attctgtcgg caacttacgt catcggtcaa
    46801 atcatggcgc agtttattac cagcgcctcc ggtctgggta tgttgctgat ggtcacctta
    46861 tttccgacac tggtgagtct gggagtaagt cgtctctctg cggtggcggt tatcgcaacc
    46921 acaatgtcca ttgagtgggg aattctggaa acgaactcca tttttgcagc ccaggtcgcg
    46981 ggaatgaaaa ttgccactta cttcttccac taccagcttc cggtcgcctc ttacgtcatt
    47041 atctcggtgg cgatctccca ctttttcgtg caacgcgctt ttgacaaaaa agataaaaat
    47101 atcaatcacg aacaagcaga gcaaaaagct ctcgataatg tcccgccgct ctattacgcc
    47161 attttacctg tgatgccgtt aatcctgatg ctcggctcgc tgttcctcgc ccacgtcggg
    47221 ctgatgcagt cagaactgca tctggtggtg gtgatgttac tgagtttgac ggtgacgatg
    47281 tttgttgagt tcttccgcaa gcataacttg cgcgaaacaa tggacgatgt gcaggcgttt
    47341 tttgacggca tgggtacgca gtttgccaac gtggtaacgc tggtggtcgc gggtgaaata
    47401 tttgcgaaag gcttaacgac gattggcact gtcgatgcgg ttatcagggg tgcggagcat
    47461 tctggtctgg gcggtattgg cgtgatgatt attatggcgc tggtcattgc catttgtgcc
    47521 attgtgatgg gctctggcaa tgcgccgttt atgtcatttg ccagtcttat tccgaatatc
    47581 gcagccggac tacatgtacc agcggttgta atgattatgc cgatgcattt tgccacgacg
    47641 ctagcgcgcg cggtttcgcc gattactgcg gtggtggtcg ttacgtcagg aattgtaggc
    47701 gtttcgcctt ttgcggtggt gaagcgaaca gcgatcccca tggcagtcgg tttcgtggtg
    47761 aatatgattg ccacaatcac gctattttat taagccatta aaagacaaaa caggccacca
    47821 gggcctgttt ttgtattact tcacaacgcg taatgtcggt cgaccaccgc gtggtggctg
    47881 cggaggttca tcgtcaggat gagtgtcatc atcgtgatct ggcttgtcgc catcaataac
    47941 cgacataacg gtttcgttgt ctgccgatgc ctcttcatca ttcatgatgc tggtatcttc
    48001 atcgtaggca gcttcaggct caaacattgt gcctgcgcca ttttcacggg cgtagatagc
    48061 cagcacggca gccagcggca cagaaacctg acgcggaatg ccgccaaagc gcgcgttaaa
    48121 gcgcacctca tcattcgcca gttccagatt gccgacagca cgcggcgcaa tgttgagtac
    48181 gatttgcccg tcacgcgcat attccatagg aacctgcacg ccagggagcg tcacatccac
    48241 caccaggtgc ggcgtgagct ggttatccag caaccactca tagaatgcac gcagcagata
    48301 gggacgacgt ggtgttagct gtgacaaatc catacagatt aactccggcc cagacgcatt
    48361 tcacgttctg cttcagttaa agaagcaagg aaagagtcac gctcaaagac gcgggtcata
    48421 tagcctttca gctctttcgc acccgggccg ctgaactcga tgcccagttg cggcagacgc
    48481 cacagcagcg gagcaagata gcaatcgacc aggctgaact catcgctcag gaagtacggc
    48541 ttctgaccga agaccggcgc aatcgccagc agttcttcgc gcagttgctt acgtgcggca
    48601 tctgcttcag aagctgaacc gttgatgatg gtgttcatca gcgtgtacca gtctttttcg
    48661 atgcgatgca tgtacagacg gctttcaccg cgagctaccg ggtaaacagg catcagtggc
    48721 ggatgcggga aacgctcatc cagatattcc ataatgatgc gagattccca cagggtcagc
    48781 tcacgatcca ccagggtcgg aacgctctga ttcgggttga ggtcaatcag atcctgaggc
    48841 ggattgtcct tttccacgtg ttcgatctcg aaacttacac ctttctcagc cagcacaatg
    48901 cggacctgat ggctatagat gtcagtagga ccggaaaaca gcgtcattac cgaacgtttg
    48961 ttggcagcga cagccatgaa aacctccagg tatagtcaga atttttactg ctaccagcca
    49021 ccaggtggcc agtcagaagt tgtgttaccc agtaaggaac gactctcttt gttcgaaaat
    49081 caaacaaaaa atgagcaata cccgacattt gggcagaaaa ttggatgata gtttaccaga
    49141 ttttgcgacc tttgtggtga gtcgatgccg gaaatgggga aaaagagatg cgctttagtc
    49201 tgaaatagtt gacttagtcc cttattggcg atgtggtttt tgttttacct gtctgtcagg
    49261 tggcagcaaa aagcaacttt ccagttttta cgctgattca gattttagct ataaaaaaac
    49321 ccgccgaagc gggttttttc gaaaattgtt ttctgccgga gcagaagcca attaacgttt
    49381 ggagaactgc ggacgacgac gtgctttacg cagaccgact ttcttacgtt caacctgacg
    49441 agcgtcacga gtaacgaagc cagctttacg cagttcagaa cgcagggact cgtcgtattc
    49501 catcagagcg cgggtgatac cgtgacggat cgcaccagcc tgaccagaga taccaccacc
    49561 tttaacggtg atgtacaggt ccagtttctc aaccatgtcg accagttcca gcggctgacg
    49621 aactaccatg cgggcagttt cacgaccgaa gtactgttcc agagaacgtt ggttgattac
    49681 gattttaccg ttgcccggtt tgatgaaaac gcgagctgcg gaacttttgc ggcgaccagt
    49741 gccgtagtat tgattttcag ccattgccta taatcccgat tagatgtcaa gaacttgcgg
    49801 ttgctgtgcc gcgtggttgt gctcgttacc cgcgtaaact ttcagtttac ggaacatagc
    49861 acgacccagc gggccttttg gcaacatgcc tttaaccgcg atttcaatca cacgctcagg
    49921 acggcgagca atcatctctt caaaggtcgc ttgtttgata ccaccgatgt ggccggtgtg
    49981 gtgatagtac actttgtcag tacacttgtt gccggttaca gcaactttgt cagcgttcag
    50041 aacgatgatg taatcaccgg tatctacgtg cggagtgtat tccgctttgt gcttaccgcg
    50101 caggcgacga gccagttcag tagccagacg gcccagagtt ttaccggtcg cgtcaacaac
    50161 ataccagtcg cgttttacgg tttctggttt agctgtaaaa gttttcatta aaagcttacc
    50221 caataaatag ttacacgttg gtgaacaccc aaacgtcttc aattgttgag gttcacacga
    50281 caaagtccgg caaacctacc ccttcgaata gcctatgcca gcacacaaaa agttttggga
    50341 aaaaactttc ttgtaacgtg gggtcgcagg attatagaga agtcggggtc aaagatcgac
    50401 ccctttttgt gatttgtgac aggttttaac ccgccaaatg ctcgcgcttc agatactctt
    50461 cgctttgcat ctcttgcaga cgtgacaggc aacgctggaa ctcaaacttc agccgatcgc
    50521 cctgataaat ttcatacagc ggcacttctg cactcaccac taatttgaca tggcgctcgt
    50581 aaaactcatc caccagcgca ataaagcgcc gcgcttcgct ctccatcaac cgcgtcataa
    50641 ctggtacatc aaacaacatg accgtatgaa agaggcgtga gagcgcaata tagtcatgct
    50701 ggctgcgggc atcgacacac aaggtggtaa aagagacagc aagcgtctga ttctcagcgc
    50761 ccattgtcgc cagcggtcga tggttgattt ctaacgtcgg tgaattttcg cgtttcgctc
    50821 ccgccagcgc caaccatagt ttatccattt gtgcccgggt ttcatcgtgg agtggcgaaa
    50881 gccacagatg cgcctgagtg agtgtacgca gtcgataatc aacaccagcg tccacgttca
    50941 ttacatcaca atgctgttta atggcatcga ttgcaggcag aaaacgcgca cgttgcaagc
    51001 catttcgata aagttcgtcc ggcggaatat ttgacgtcgc taccagggta ataccgcggg
    51061 cgaacagggc tttcatcaga ccgccaagta gcatggcgtc ggtaatatca gaaacaaaaa
    51121 attcgtcaaa acagagcacg tcagtttcgg ctttaaagcg atcggcaata atttccagcg
    51181 gatcggtctg cccctgtaag gcagttagct cttcgtgcac ccgcagcata aaacggtgaa
    51241 agtgcaggcg ctgtttccgc tctcccggca ggctttgata gaaaaggtcc atcagccagg
    51301 ttttcccgcg tcctacaccg ccccacatat ataagccacg cactggcgta tgctttgtgt
    51361 cttcgcgttt accccacagc ttaccgaccc gcgccattag cccactcgtc ctgggggctg
    51421 gtggcctgct attgatgagt tcttgataaa taatttccag gcggctgacg gcctcttttt
    51481 gaacgtcgtc gggttgatgg ctgccttcat tgagcgcctt caggtattgc gatgttgggg
    51541 taacgctttg catgatctta ttattattcc ttgaataatc ggtgcgccgt tgttcacggt
    51601 tgacgaaaaa aaggccgttc tacactacgc gatatgcagt cgggattcca cttctgtgga
    51661 attaacggtt atagtggcat aatcagccgc aggcatggag cctgaagcca acaccctacg
    51721 gaaacaaaag acaacgggag atgttcatga cctgggaata tgcgctaatt gggttagtcg
    51781 tcggcatcat tattggtgct gtggccatgc gttttggtaa tcgtaaacta cgccagcaac
    51841 aggcgttgca gtacgaactg gaaaagaata aagctgaact ggacgagtat cgcgaagagc
    51901 tggttagcca ctttgcccgc agcgcggaat tactggatac catggcgcac gactatcgcc
    51961 agctgtatca gcacatggcg aaaagctcca gcagcctgct gccggaactg tctgctgaag
    52021 caaacccgtt ccgtaatcgt ctggcagagt ctgaagccag caacgatcag gcaccggtgc
    52081 agatgcctcg cgactattct gaaggtgcat ccggcctgct gcgtactggc gcgaagcgcg
    52141 actaatttat ttttcgggcg cagccattgc gccctcctct tctctccctc cccgactatc
    52201 atttaatctg gtgtctcatt gttagccgtc tgaaaattca ataacatcaa actgttttga
    52261 atctcttttc ttatcattca ggtacgagag caggaataat gaaaaaacaa acccagctgt
    52321 tgagtgcatt agcgttaagt gtcgggttaa ctctctcggc gtcatttcag gccgtcgcgt
    52381 cgattccagg ccaggttgcc gatcaggccc ctctccccag tctggctcca atgctggaaa
    52441 aagtgcttcc ggcagtggtg agcgtacggg tggaaggaac ggccagtcag ggacagaaaa
    52501 tcccggaaga attcaaaaag ttttttggtg atgatttacc ggatcaacct gcacaaccct
    52561 tcgaaggttt aggttccggt gtcatcatca acgccagtaa aggctatgtg ctgaccaaca
    52621 accatgtgat taatcaggca cagaaaatca gtattcagct caatgatggg cgcgagtttg
    52681 atgccaaact gattggtagc gatgaccaga gcgatatcgc cctgttacaa attcaaaacc
    52741 cgagcaaatt aacgcaaatc gctattgccg actccgataa attgcgcgtc ggtgattttg
    52801 ccgtagcggt cggtaatcca tttggccttg ggcaaaccgc cacctctggc attgtttccg
    52861 cattaggccg cagcgggttg aatcttgaag gtctggaaaa ctttatccag acagatgctt
    52921 ccattaaccg cggtaactcc ggcggtgcac tattaaacct taacggtgag ttaattggca
    52981 tcaacactgc aatccttgcg cctggcggcg ggagcgtcgg gattggattt gccatcccca
    53041 gtaatatggc gcgaacactg gcgcagcagc ttatcgactt tggtgaaatc aaacgcggtt
    53101 tgttaggcat caaaggcacc gagatgagtg ccgatatcgc caaagccttc aaccttgacg
    53161 tgcagcgtgg cgcgtttgtc agcgaagtgt tgccaggttc tggctcggca aaagcgggcg
    53221 tcaaagcggg cgatattatt accagcctca acggcaaacc gctgaatagc tttgctgagt
    53281 tgcgctctcg tatcgcgact acagagccgg gcacgaaagt gaagcttggc ctgctgcgta
    53341 acggcaaacc actggaagta gaagtgacgc ttgataccag cacctcttcg tcggccagcg
    53401 ctgaaatgat cacgccagcg ctggaaggtg caacgttgag cgatggtcag ctaaaagatg
    53461 gcggcaaagg tattaagatc gatgaagttg tcaaaggaag cccagctgct caggcaggct
    53521 tgcaaaaaga cgatgtgatc attggcgtca accgcgatcg ggtgaactcg attgctgaaa
    53581 tgcgtaaagt gctggcggca aaaccggcca tcatcgccct gcaaattgta cgcggcaatg
    53641 aaagcatcta tctgctgatg cgttaatgtc gtaaaccggg catcaggctt acgtgtgatg
    53701 tccggttaac tcgtggtatg ctgctgccgt tccctttttt aatgacgcct ccatcatgtt
    53761 tgtgaagctc ttacgttccg ttgcgattgg attaattgtc ggcgctattc tgctggttgc
    53821 catgccttcg ctgcgcagcc ttaacccgct ttccactccg caatttgaca gtaccgatga
    53881 gacgcctgcc agctataatc tggcggttcg ccgcgccgcg ccagcggtgg ttaacgttta
    53941 caaccgtggt gtgaacacca actctcacaa ccagcttgag atccgcaccc tgggatccgg
    54001 tgtaatcatg gatcaacgcg gttatatcat caccaataaa cacgtcatca acgacgccga
    54061 tcagatcatc gtcgccttac aggatggacg tgtatttgaa gcattgctgg tgggatctga
    54121 ctctctaacc gatctggcgg tacttaaaat taatgccact ggcggtttac ctaccattcc
    54181 aattaatgca cgtcgcgtac cgcacattgg cgacgtagta ctggcgatcg gtaacccgta
    54241 caacctcggg cagaccatta cccaagggat tattagtgcc acgggtcgaa tcggtctgaa
    54301 ccctaccggg cggcaaaact tcctacaaac cgatgcttcc attaaccacg gtaactctgg
    54361 tggcgcgctg gtgaactcgc tgggagaact gatgggcatt aacacgctgt cgtttgataa
    54421 gagtaacgat ggcgaaacgc cggaaggtat cggctttgcg attcctttcc agttagcaac
    54481 caaaattatg gataagctga tccgcgatgg gcgcgtgatc cgcggctaca ttggcattgg
    54541 tggacgtgag atcgcaccac tgcacgcgca gagcggtggt atagatcaac tgcaagggat
    54601 cgtggttaat gaagtgtcac ctgacggccc ggcggcgaat gcgggtattc aggtcaacga
    54661 tctgattatt tcggtggata acaaaccggc catctctgct ctggagacga tggatcaggt
    54721 ggcagaaatt cgccctggtt cggtgatccc ggttgtagtg atgcgtgatg ataagcagtt
    54781 aacgctgcag gtcaccattc aggaatatcc ggcaaccaat taagtcgagt gctcaaaaca
    54841 aaaaaccgga gtctgtgctc cggtttttta ttattcgcta atcaattact tattaacgaa
    54901 ctcttcgccc agggcgatat ctttcttgag cgtatccagc ataccttcca gcgcgttctg
    54961 ttcaaatgcg ctcagggtac cgatagattt acgctcttcc acgccgtttt tacccagcag
    55021 cagcggttga gagaagaaac gggcgtattg accgtcgcct tcaacgtagg cacattcgac
    55081 aacgccttgt tcgccctgca gtgcacgaac cagagacaga ccaaaacgtg cagctgcctg
    55141 gcccatagac agggttgcag acccgccacc ggctttcgct tcaaccacct cagtacccgc
    55201 gttctggata cgtttggtca gatcagccac ttcctgctcg gtaaaactaa cgccaggaac
    55261 ctgtgacagc agcggcagaa tggtaacacc agagtgaccg ccaataaccg gcacttcaac
    55321 ttcgcctggc tgtttgcctt tcagttccgc aacaaaggtg ttggaacgaa tgatatccag
    55381 cgtggtaacg ccgaacagtt tgtttttgtc ataaacaccg gcttttttca gcacttcagc
    55441 agcaattgca actgtggtgt taaccgggtt agtgataata ccaatgcacg ctttcgggca
    55501 ggttttcgca acttgctgta ccaggttttt cacgatgccg gcgttaacgt taaacaggtc
    55561 ggaacgatcc atacccggtt tacgcgctac acctgcagag ataagaacga catctgcgcc
    55621 ttccagcgcc ggagtcgcat cttcaccaga aaaacctttg attttcacag cagtagggat
    55681 atggctcaga tcgacagcca caccgggagt cactggagcg atatcataca gagagagttc
    55741 tgaacctgaa ggcagttggg tttttaacag tagtgcaagc gcctggccaa taccgccagc
    55801 agcgccgagg actgcgactt tcatcctaaa ctccttatta tattgataaa ctaagatatg
    55861 ttgctccgct gccgcgacct taatccacaa aattgccgtt tacaatgacc acatatcaag
    55921 aatgtgtagt cacgcaagtt tagcgtttat gcatttaatt gccgtaatca ggaacctaac
    55981 ttacgtaatt aacagtcgct tatgcattag cgcaacattc caacaggtgg tgacaatata
    56041 ccctaccgtt cagccaaaac aacatcaatt tgataacaat taatttactt ttaagcagaa
    56101 tttgcatgcc gtgacgcagg catgtttctc aataacgaaa tttgataaaa tcccgctctt
    56161 tcataacatt atttcagcct tcttcagggc tgactgtttg cataaaaatt catctgtatg
    56221 cacaataatg ttgtatcaac caccatatcg ggtgacttat gcgaagctcg gctaagcaag
    56281 aagaactagt taaagcattt aaagcattac ttaaagaaga gaaatttagc tcccagggcg
    56341 aaatcgtcgc cgcgttgcag gagcaaggct ttgacaatat taatcagtct aaagtctcgc
    56401 ggatgttgac caagtttggt gctgtacgta cacgcaatgc caaaatggaa atggtttact
    56461 gcctgccagc tgaactgggt gtaccaacca cctccagtcc attgaagaat ctggtgctgg
    56521 atatcgacta caacgatgca gttgtcgtga ttcataccag ccctggcgcg gcgcagttaa
    56581 ttgctcgcct gctggactca ctgggcaaag cagaaggtat tctgggcacc atcgctggcg
    56641 atgacaccat ctttaccacc cctgctaacg gtttcaccgt caaagacctg tacgaagcga
    56701 ttttagagct gttcgaccag gagctttaat ctctgccccg tcgcttctgg cggcggggaa
    56761 aatgttgctt atccctctca accccctgct ttcccctgcg attaatttaa cgaatagtgc
    56821 gttttactgc gacatgtcat tcacataatg aatacatacg gtaaaaaaag cacattatgc
    56881 aaaattcatt atctaattga aaatactaga attaaaaata aatgaccgtg tttttaattc
    56941 ttttttgtta ttaaaattca cattttcaac acttagtatc aactgaaaca gttagcatgg
    57001 tattaattag ttcaataatt agtgtgtgct tgattttgtg atatgggtca cgaaacaaag
    57061 gcccagctaa aagattatgt cgaggtaaaa atcatgaaaa tcaaaaccac tgtagctgca
    57121 ttaagcgtac tttctgttct ctctttcggt gcattcgctg ccgactccat tgatgctgca
    57181 caagcacaaa atcgtgaagc aatcgggacc gtatccgtaa gtggtgtggc gtcttcgcca
    57241 atggatatgc gtgaaatgct gaacaaaaaa gcggaagaga aaggcgcaac ggcctaccag
    57301 attactgaag ctcgtagcgg tgacacctgg cacgctacgg ctgaactgta caaataaacc
    57361 ctcatcgtct tgtccgacga tattgccccc ggttcggggg cttttttttg cgctaatgac
    57421 gaacattaaa acgcaaatgc ccttccagct cttcctctgc ctcatcaaat agcaatatta
    57481 acgcgccaaa acggcgacgc gttttctctc ccagatgaac aaattcaatc tcaagtggta
    57541 gcggcaggac atcgttcatt aacacatccc atagtgagtc gagatcgcgt accttatctt
    57601 tcgccagacc aaaggtttgg ctaaagtcac gataaaaatc ctcctgactc tcaatctcat
    57661 caaaatcaaa ggtataaata ttcatctatt gccaccgtca cgtttcgcgg cgagttctgc
    57721 cgtgcatcgc taagtatagc catgaaaaaa ccgacacttt tggcgtcggt tttgacctaa
    57781 ctatcggtca acgcatgttg atacttatgg agcatacccg ccagccgatg aaccggttcc
    57841 gtcacctgcg gtggcgcttg ccagatgcgt agcttttcct ggtagatttc aagttcttcc
    57901 agcaactggc caaagtaccg acgacgttta tcatcgctac gggcagatat cacatggtct
    57961 gctgtgcggc gcatttgtcg gtgaaacgcc gataaatcct cgttaaccgg gatcggcgca
    58021 tcacgcaggc gctggtgcgc gataatcatc gtcagcgcca ggcgaaattt cggcaaatcc
    58081 cctgggaact tattcatcag caaaaacagc tgctgataaa gtgccgggag gtggttctct
    58141 ttacgacgtg ccacattggt agtcatcgcg gaaacagcgg cagaaacaaa ctgattaagc
    58201 agtacacgtc cggtcctgtc gcgcgattta tcccgcacaa gcaaaataac ggtgaacgcg
    58261 agcacacagc cgacgatttg ccctaatgcg ctgtcgagaa actgactgaa atggaaagtc
    58321 atcgggttat ccagcacgat aatatttatg gtgctggcca gcgcccccat cgagcccagt
    58381 cgccgttgct gtacttctat accgaggaaa aatcccagca ctgccaggct aatacacagc
    58441 agcaacatgc tctgttgggt attagggata atcaccaaaa agtagagcag ccctaacggc
    58501 agcgcggcca gcgtcccgta gataaagtcg atcgccacca tgcgtggatt cggcaaacgc
    58561 attgccagtg acgtcactac cgcaatcatc accattgcac cactgccgga agtccagccc
    58621 gtccacagcc agaaaagcgt gcccagaatg caggaaagtg tggttcgcca gaagttaacc
    58681 atcgcatgat gacgttcggc tgactctact ttgacttccg gttcgccttg caggatctct
    58741 tcttcggtgg cgttgatttt tgtgttactg ataacgccgc gcttgagaag ctgataacgc
    58801 gttgccgccg cgacccagct ataaatggtg acaggcgttt cccgttcccc ggtccaggcg
    58861 ataactctcc gcaggcgttt gagctgcttg tggacgtcct gcgcggtttc taccggcgtg
    58921 tcaaaaaatt cgcggaaagt atcagtgatc aattccgggc gcgtattctg aataagataa
    58981 gtttcgcagg attgggtaat cagcgtcagc gatagcgtat tgatcgcttt taaacgtcga
    59041 ttggcccgcg cccagcggga agattccata ttcaggttgc tgcgcatgcc ttgtagcgcc
    59101 gtggtgcgtc gcaccaggtc gccccaggct ttatcgacaa cttcaccatc gccatgcttg
    59161 atacagagtt gcattaattg atattgcgcg accagcaaac tttccagctc tcgatccact
    59221 tcttgtttga tcgatcgcgg agaaaagagc aaatccgcca taatcgcaca cacaataccg
    59281 ataacgatct cgctacaacg ttcgacggca aactgcggcg taagcaatgg ttccggctga
    59341 atggtgatca caatgatcag cgcggtataa ccggccagcc cccacgcgta cgagttttct
    59401 attcgtacca gcgaggatat ccaggtacaa aaaccggccc agatacagca caccagaatc
    59461 atcaataatg gtgcgcggat catcgcaatg atgatcacca gtccggcaat acagccaata
    59521 aatgtgccga tgatgcgcaa aaagccacga taacgaatag cgccagaata cggttcacct
    59581 cccgcagcaa aggccggacc ggcggcaaca atcgccgctg tcagtaccgc ccagcgtggc
    59641 gtttccagct ggaagtgaaa gccaacaaac agcgccagta caatggcggt cgccagtttt
    59701 accgcaaagc gaatatgttg gttagcaatg gagaaaatac ccatcgtgat taaccaaact
    59761 cacgcaggcg atgggccatt ttacggaaga acgaatcctg gctttcgtcg cgatcttgtt
    59821 tgccagtgac caccactgta gcagtggtgc ccgcaggcca gatgttctct tgctggttgt
    59881 cgagacgaat acgaaccgga acacgttgcg caagacgcac ccattcaagg ttagagtcta
    59941 tagtcgccat ccctttgtcg tcacgcgtgc tgctggcgtt ggtgacccct gcggcaacac
    60001 tatcaacagt ccctttcagc actttgttac tgccaagcgg cgtgatctct gcacgatacc
    60061 ccggacgcac cccttccagc ttagtttctt ccatataggc cagtacatag aaggagttct
    60121 gtttcaccag cgcaaccgcc gttgatcctc gagtaataaa ctcaccggta tagacgttga
    60181 ggttggtcac ccagccatct gctggcgcgc ggatcaccgt gcgttcaaga tccagttttg
    60241 ccagatcgcg ggtcgcctgc gctttcgcta actgatgcag aaccgtttgt agtacgttgt
    60301 tagcctggtc gatctcttcg cgagacatcg cctgcacacc gagacggtta cgacgtccgg
    60361 cctcctggcg tttctcctgt gccagtacct gataataagc aacatcggct tgcgcttcct
    60421 caagcgcctt ttgatagcgc ggctggtcga tggtgaacag tatctgtcct tttttcacca
    60481 gctggttatc atgaacattc acctgggtaa tgagtccaga aacgtccggc gcgatcgcaa
    60541 tgacgtcagc gctaaagcgc gcgtcacgcg tccaggggga ttcggtgtaa tagacctagg
    60601 cattaaaaat tgcgatgaag gccagaatga ctaatacgac cgtgatggcc gtacgggaga
    60661 attttcttat tagtgttttc acttcaacct caaacgaaca gtcgcgatat caaataaaac
    60721 aagcagcaat agagcgcggt gttgaacaac gccggatgcc agacaaagtc gtagatacct
    60781 gttggcacaa gtacccggcg caccagccag aaaatcgcca gtgataaaag caattcaaaa
    60841 aatatcggtg ggaaggacag cccaaacacc acgataacgg gaaacagact catgttgacc
    60901 ttggttgtat agagagagca ggcgttatta ttttcagcat ctgtcgccgc agagaagggc
    60961 atggaaagcc gggcgagagc aacattgctg tagattgata tttaatatat tagcgtaact
    61021 gttatgctat tatctatatt agactggccc cctgaatctc cagacaacca gtatcactta
    61081 aataagtgat agt
//
LOCUS       DAJVUN010000003        53041 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.003, whole genome shotgun sequence.
ACCESSION   DAJVUN010000003 DAJVUN010000000
VERSION     DAJVUN010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 53041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 53041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..53041
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.003"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(25..399)
                     /locus_tag="OQQ76_000129"
     CDS             complement(25..399)
                     /locus_tag="OQQ76_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1966755.1"
                     /translation="MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETR
                     VDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFG
                     SVFFGNSKGTLNNDMSVMLPTY"
     gene            complement(769..1248)
                     /gene="folK"
                     /locus_tag="OQQ76_000130"
     CDS             complement(769..1248)
                     /gene="folK"
                     /locus_tag="OQQ76_000130"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HCS1966756.1"
                     /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILAVSSFYRTP
                     PLGPQDQPDYLNASVALETSLAPEELLNHTQRIELQQDRVRKAERWGPRTLDLDIMLF
                     GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELAFPDGETLREVLHTRAFDELSKW"
     gene            complement(1245..2663)
                     /gene="pcnB"
                     /locus_tag="OQQ76_000131"
     CDS             complement(1245..2663)
                     /gene="pcnB"
                     /locus_tag="OQQ76_000131"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000174652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HCS1966757.1"
                     /translation="MTLPRCTIFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQH
                     AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKL
                     FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGS
                     IEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLR
                     AVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEY
                     HLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL
                     ETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG
                     KRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDE
                     EPSPRRRTRRPRKRAPRREGTA"
     gene            complement(2702..3628)
                     /gene="gluQRS"
                     /locus_tag="OQQ76_000132"
     CDS             complement(2702..3628)
                     /gene="gluQRS"
                     /locus_tag="OQQ76_000132"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001432381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HCS1966758.1"
                     /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR
                     ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL
                     HEQGLSYYCTCTRARIQSIVGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGII
                     HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF
                     GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLIAALQFLGQLAEAHWQDFS
                     VEQILQSAVKNWTLTAVPESAIVNSTFSNASC"
     gene            complement(3665..4120)
                     /gene="dksA"
                     /locus_tag="OQQ76_000133"
     CDS             complement(3665..4120)
                     /gene="dksA"
                     /locus_tag="OQQ76_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002209354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HCS1966759.1"
                     /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL
                     EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
                     LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
     gene            complement(4298..5002)
                     /gene="sfsA"
                     /locus_tag="OQQ76_000134"
     CDS             complement(4298..5002)
                     /gene="sfsA"
                     /locus_tag="OQQ76_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HCS1966760.1"
                     /translation="MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC
                     ATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS
                     GYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH
                     LRELMNVAAEGLRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE
                     ISAESMALKKSLPVTL"
     gene            complement(5017..5547)
                     /gene="thpR"
                     /locus_tag="OQQ76_000135"
     CDS             complement(5017..5547)
                     /gene="thpR"
                     /locus_tag="OQQ76_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HCS1966761.1"
                     /translation="MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHL
                     TLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQL
                     ANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA
                     RGRTRYTPLKRWALMQ"
     gene            5621..8050
                     /gene="hrpB"
                     /locus_tag="OQQ76_000136"
     CDS             5621..8050
                     /gene="hrpB"
                     /locus_tag="OQQ76_000136"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HCS1966762.1"
                     /translation="MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH
                     PGINGKIILLEPRRLAARNVAQRLEELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEG
                     VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD
                     NDRLQQMLPEASVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLF
                     LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE
                     TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLH
                     LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRL
                     LQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG
                     NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG
                     RYQRANGMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQL
                     VQQSDTVEWDDAQGTLKAWRRLQIGLLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL
                     NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLATLETWLLPHMTGVHSLRGLKSLD
                     IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATN
                     PTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQKEMKGRYPKHVWPDDPAN
                     TAPTRRTKKYS"
     gene            8246..10768
                     /gene="mrcB"
                     /locus_tag="OQQ76_000137"
     CDS             8246..10768
                     /gene="mrcB"
                     /locus_tag="OQQ76_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyl
                     transferase/transpeptidase"
                     /protein_id="HCS1966763.1"
                     /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE
                     PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL
                     PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD
                     FPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR
                     SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL
                     FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY
                     FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD
                     MLSARPLGGQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA
                     EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI
                     GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLV
                     DALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA
                     FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT
                     GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAM
                     SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRVLPVWTSDPQSLCQQSE
                     MQQQPSGNPFDQSSQPQQQPAQQEQKDSDGVAGWIKDMFGSN"
     gene            10988..13177
                     /gene="fhuA"
                     /locus_tag="OQQ76_000138"
     CDS             10988..13177
                     /gene="fhuA"
                     /locus_tag="OQQ76_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrichrome porin FhuA"
                     /protein_id="HCS1966764.1"
                     /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV
                     TAAPAPQESLWGPAATIAAKHSATATKTDTPIEKTPQSISVVTNEEMQMHQFQSVKEA
                     LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLNQNNYLDGLKLQGNFYNDAVIDPYMLE
                     RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDALD
                     DNGEFSYRLTGLARSTNEQQKNSESQRYTIAPSFSWRPDDKTNFTFLSYFQNEPETGY
                     YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNQKMVGYSFEHGFNDTFTVRQNLR
                     FSEMKTSQKSVYGTGIAGDGHTLNRGTVVDNERLQNFSVDTQLESKFATGDVEHTLLT
                     GVDFMRMRNDINASFGSAPSIDLYNKYHPEYFAFGSAEPYQMNESKQTGIYVQDQAEW
                     NKWVFTLGGRYDWSKQATTVRENSYTPTEGYIERNDHQFTWRGGVNYLFDNGISPYFS
                     YSQSFEPSAFDLWSNPRISYKPSKGEQYEAGVKYVPNDMPVVVTGAVYQLTKTNNLTA
                     DPTNPLAQVPAGEIRARGVELEAKAALNANINLTASYTYTDAEYTKDTNLKGKTPEQV
                     PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANTFKVGSAAVMDAVVKYDLA
                     RFGMAGSSLAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF"
     gene            13228..14025
                     /gene="fhuC"
                     /locus_tag="OQQ76_000139"
     CDS             13228..14025
                     /gene="fhuC"
                     /locus_tag="OQQ76_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HCS1966765.1"
                     /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG
                     HNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV
                     RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM
                     LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL
                     VALRGGEMIAQGTPAEIMRGDTLEMIYGIPMGILPHPAGAAPVSFVY"
     gene            14025..14915
                     /gene="fhuD"
                     /locus_tag="OQQ76_000140"
     CDS             14025..14915
                     /gene="fhuD"
                     /locus_tag="OQQ76_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter
                     substrate-binding protein FhuD"
                     /protein_id="HCS1966766.1"
                     /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL
                     PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
                     SAGYGPSAEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYED
                     FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG
                     STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYG
                     ATLSAMHFVRVLDNAIGGKA"
     gene            14912..16894
                     /gene="fhuB"
                     /locus_tag="OQQ76_000141"
     CDS             14912..16894
                     /gene="fhuB"
                     /locus_tag="OQQ76_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HCS1966767.1"
                     /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP
                     DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG
                     ITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAI
                     NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD
                     DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGSRRLLPR
                     LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM
                     KVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWMWASGALLDDLMPWRWP
                     RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL
                     LPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV
                     LTWISGSTYNATDAQVWRTGIVMVILLAITPLYRRWLTILPLGGDTARAVGMALTPTR
                     IALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA
                     DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR"
     gene            complement(16929..18209)
                     /gene="hemL"
                     /locus_tag="OQQ76_000142"
     CDS             complement(16929..18209)
                     /gene="hemL"
                     /locus_tag="OQQ76_000142"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HCS1966768.1"
                     /translation="MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYL
                     YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTEL
                     VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
                     GQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPQPE
                     FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
                     GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEG
                     LLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY
                     LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL"
     gene            18434..19855
                     /gene="clcA"
                     /locus_tag="OQQ76_000143"
     CDS             18434..19855
                     /gene="clcA"
                     /locus_tag="OQQ76_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HCS1966769.1"
                     /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT
                     LVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP
                     EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR
                     MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV
                     FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTQWLYLILGIIFGIFGPIFNKWVLGM
                     QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV
                     FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVVVELFPQYHLEAGTFAIA
                     GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA
                     RTLAKQEAEQLARSKAASASENT"
     gene            19879..19944
                     /locus_tag="OQQ76_000144"
     CDS             19879..19944
                     /locus_tag="OQQ76_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966770.1"
                     /translation="MAIIIGLEFAQLPMSFGAKYE"
     gene            19937..20281
                     /gene="erpA"
                     /locus_tag="OQQ76_000145"
     CDS             19937..20281
                     /gene="erpA"
                     /locus_tag="OQQ76_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HCS1966771.1"
                     /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
                     FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
                     KSTCGCGSSFSI"
     gene            complement(20328..20951)
                     /locus_tag="OQQ76_000146"
     CDS             complement(20328..20951)
                     /locus_tag="OQQ76_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HCS1966772.1"
                     /translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
                     TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV
                     GIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
                     HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR"
     gene            complement(20989..21788)
                     /gene="btuF"
                     /locus_tag="OQQ76_000147"
                     /pseudo
     CDS             complement(20989..21788)
                     /gene="btuF"
                     /locus_tag="OQQ76_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414700.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter substrate-binding
                     protein BtuF"
     gene            complement(21781..22479)
                     /gene="mtnN"
                     /locus_tag="OQQ76_000148"
     CDS             complement(21781..22479)
                     /gene="mtnN"
                     /locus_tag="OQQ76_000148"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HCS1966773.1"
                     /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA
                     LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV
                     TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK
                     IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
                     SLMVESLVQKLAHG"
     gene            22563..24080
                     /gene="dgt"
                     /locus_tag="OQQ76_000149"
     CDS             22563..24080
                     /gene="dgt"
                     /locus_tag="OQQ76_000149"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HCS1966774.1"
                     /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA
                     IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRMKELKLLEAYGLDEL
                     TGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAAL
                     RLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW
                     RGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVAD
                     LEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFM
                     YLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFS
                     HPDVEQLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTR
                     HRLAYVEAVSKLPSDYPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ"
     gene            24210..25634
                     /gene="degP"
                     /locus_tag="OQQ76_000150"
     CDS             24210..25634
                     /gene="degP"
                     /locus_tag="OQQ76_000150"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegP"
                     /protein_id="HCS1966775.1"
                     /translation="MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM
                     LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN
                     GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS
                     DIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA
                     ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL
                     TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD
                     VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS
                     IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV
                     LDSKPSVLALNIQRGDSTIYLLMQ"
     gene            25812..26942
                     /gene="cdaR"
                     /locus_tag="OQQ76_000151"
     CDS             25812..26942
                     /gene="cdaR"
                     /locus_tag="OQQ76_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CdaR"
                     /protein_id="HCS1966776.1"
                     /translation="MAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALL
                     VLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMT
                     AEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIV
                     EVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDH
                     RKRVEQLITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYF
                     YQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKA
                     LFIHRNTLEYRLNCISELTGLDLGNFDDRLLLYVALQLDEER"
     gene            complement(27031..27417)
                     /locus_tag="OQQ76_000152"
     CDS             complement(27031..27417)
                     /locus_tag="OQQ76_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3461 family protein"
                     /protein_id="HCS1966777.1"
                     /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK
                     SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD
                     DLRHLESVVTNKISEIEADLEKLTRK"
     gene            complement(27579..28391)
                     /gene="yaeI"
                     /locus_tag="OQQ76_000153"
     CDS             complement(27579..28391)
                     /gene="yaeI"
                     /locus_tag="OQQ76_000153"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414706.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase YaeI"
                     /protein_id="HCS1966778.1"
                     /translation="MISRRRLLQATAATIATSSGFGYMHYWEPGWFELIRHRLAFFKD
                     NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFS
                     DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSVGITVLFNQATVIATPNRQFE
                     LVGTGDLWAGQCKPPPASEANLPRLMLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVP
                     LVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV"
     gene            complement(28446..29270)
                     /gene="dapD"
                     /locus_tag="OQQ76_000154"
     CDS             complement(28446..29270)
                     /gene="dapD"
                     /locus_tag="OQQ76_000154"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HCS1966779.1"
                     /translation="MQQLQNIIETAFERRAEITPANADTVTREAVNQVISLLDSGALR
                     VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG
                     FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE
                     TGEIHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
     gene            complement(29301..31973)
                     /gene="glnD"
                     /locus_tag="OQQ76_000155"
     CDS             complement(29301..31973)
                     /gene="glnD"
                     /locus_tag="OQQ76_000155"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HCS1966780.1"
                     /translation="MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQ
                     RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP
                     LSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT
                     NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
                     IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL
                     HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF
                     DEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGI
                     YSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ
                     WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF
                     IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
                     DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
                     LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW
                     HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
                     FTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF
                     TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED
                     LFIIATADRRALNNELQQEVHQRLTEALNPNDKG"
     gene            complement(32035..32829)
                     /gene="map"
                     /locus_tag="OQQ76_000156"
     CDS             complement(32035..32829)
                     /gene="map"
                     /locus_tag="OQQ76_000156"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HCS1966781.1"
                     /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI
                     CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK
                     DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE
                     GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK
                     DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE"
     gene            33197..33922
                     /gene="rpsB"
                     /locus_tag="OQQ76_000157"
     CDS             33197..33922
                     /gene="rpsB"
                     /locus_tag="OQQ76_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HCS1966782.1"
                     /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
                     KTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
                     LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA
                     ATVREGRSQDLASQAEESFVEAE"
     gene            34180..35031
                     /gene="tsf"
                     /locus_tag="OQQ76_000158"
     CDS             34180..35031
                     /gene="tsf"
                     /locus_tag="OQQ76_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HCS1966783.1"
                     /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
                     GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA
                     GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG
                     ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
                     RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV
                     AAMSKQS"
     gene            35178..35903
                     /gene="pyrH"
                     /locus_tag="OQQ76_000159"
     CDS             35178..35903
                     /gene="pyrH"
                     /locus_tag="OQQ76_000159"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HCS1966784.1"
                     /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
                     VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
                     RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
                     VLKATKVDGVFTADPTKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF
                     NMNKPGALRRVVMGEKEGTLITE"
     gene            36195..36752
                     /gene="frr"
                     /locus_tag="OQQ76_000160"
     CDS             36195..36752
                     /gene="frr"
                     /locus_tag="OQQ76_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000622421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HCS1966785.1"
                     /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY
                     YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL
                     PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV
                     QKLTDAAIKKIEAALADKEAELMQF"
     gene            36844..38040
                     /gene="ispC"
                     /locus_tag="OQQ76_000161"
     CDS             36844..38040
                     /gene="ispC"
                     /locus_tag="OQQ76_000161"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HCS1966786.1"
                     /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE
                     QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV
                     GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL
                     PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI
                     SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
                     RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTA
                     LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
                     VMRLAS"
     gene            38229..38987
                     /gene="ispU"
                     /locus_tag="OQQ76_000162"
                     /gene_synonym="uppS"
     CDS             38229..38987
                     /gene="ispU"
                     /locus_tag="OQQ76_000162"
                     /gene_synonym="uppS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308203.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl-diphosphate-specific
                     ditrans,polycis-undecaprenyl-diphosphate synthase"
                     /protein_id="HCS1966787.1"
                     /translation="MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
                     GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
                     NVRLRIIGDTSRFNSRLQECIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK
                     VQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDV
                     LWPDFDEQDFEGALNAFANRERRFGGTEPGDETA"
     gene            39000..39857
                     /gene="cdsA"
                     /locus_tag="OQQ76_000163"
     CDS             39000..39857
                     /gene="cdsA"
                     /locus_tag="OQQ76_000163"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414717.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HCS1966788.1"
                     /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWG
                     QLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLL
                     VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
                     VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPV
                     TLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
                     LLLLVFRTL"
     gene            39869..41221
                     /gene="rseP"
                     /locus_tag="OQQ76_000164"
     CDS             39869..41221
                     /gene="rseP"
                     /locus_tag="OQQ76_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma E protease regulator RseP"
                     /protein_id="HCS1966789.1"
                     /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF
                     GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA
                     AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEMAANSIAAEAQIAPGTELKAVDGIETP
                     DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR
                     GLQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI
                     ERQGSPLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT
                     WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI
                     INLFPLPVLDGAHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL
                     "
     gene            41251..43683
                     /gene="bamA"
                     /locus_tag="OQQ76_000165"
     CDS             41251..43683
                     /gene="bamA"
                     /locus_tag="OQQ76_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HCS1966790.1"
                     /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
                     SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN
                     KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR
                     NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK
                     LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN
                     LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT
                     VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL
                     GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
                     GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS
                     YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK
                     TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD
                     HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY
                     DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD
                     MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK
                     AEQFQFNIGKTW"
     gene            43805..44290
                     /gene="skp"
                     /locus_tag="OQQ76_000166"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
     CDS             43805..44290
                     /gene="skp"
                     /locus_tag="OQQ76_000166"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone Skp"
                     /protein_id="HCS1966791.1"
                     /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN
                     TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE
                     QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV
                     K"
     gene            44294..45319
                     /gene="lpxD"
                     /locus_tag="OQQ76_000167"
     CDS             44294..45319
                     /gene="lpxD"
                     /locus_tag="OQQ76_000167"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCS1966792.1"
                     /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN
                     PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
                     SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI
                     YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG
                     ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
                     MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE
                     RKVNQQD"
     gene            45424..45879
                     /gene="fabZ"
                     /locus_tag="OQQ76_000168"
     CDS             45424..45879
                     /gene="fabZ"
                     /locus_tag="OQQ76_000168"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000210741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HCS1966793.1"
                     /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
                     SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
                     RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
     gene            45883..46671
                     /gene="lpxA"
                     /locus_tag="OQQ76_000169"
     CDS             45883..46671
                     /gene="lpxA"
                     /locus_tag="OQQ76_000169"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HCS1966794.1"
                     /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVGIGEGTVL
                     KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
                     VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
                     QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA
                     YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFSRSTRGLIR"
     gene            46671..47819
                     /gene="lpxB"
                     /locus_tag="OQQ76_000170"
     CDS             46671..47819
                     /gene="lpxB"
                     /locus_tag="OQQ76_000170"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HCS1966795.1"
                     /translation="MTEQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGP
                     RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF
                     NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP
                     CRFIGHTMADAMPLDPDKNAARDVLGIPHDVHCLALLPGSRGAEVEMLSADFLKTAQL
                     LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDFSVHLLDGMGREAMVASDAALLASG
                     TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP
                     QKLAAALLPLLANGKISHAMHDTFRELHQQIRCNADEQAAQAVLELAQ"
     gene            47816..48412
                     /gene="rnhB"
                     /locus_tag="OQQ76_000171"
     CDS             47816..48412
                     /gene="rnhB"
                     /locus_tag="OQQ76_000171"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HCS1966796.1"
                     /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN
                     DSKKLSEKRRLALCEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP
                     EYVLIDGNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA
                     QHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS"
     gene            48449..51931
                     /gene="dnaE"
                     /locus_tag="OQQ76_000172"
     CDS             48449..51931
                     /gene="dnaE"
                     /locus_tag="OQQ76_000172"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCS1966797.1"
                     /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF
                     TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS
                     KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE
                     HFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA
                     IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY
                     FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ
                     MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
                     NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
                     HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA
                     GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
                     WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
                     PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG
                     IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAEL
                     AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
                     GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG
                     GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
                     AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
                     IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML
                     FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLAISL
                     TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
                     RGLIGSEQVELEFD"
     gene            51944..52903
                     /gene="accA"
                     /locus_tag="OQQ76_000173"
     CDS             51944..52903
                     /gene="accA"
                     /locus_tag="OQQ76_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HCS1966798.1"
                     /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
                     EKSVELTRKIFADLGAWQIAQLARHLQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
                     GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF
                     IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN
                     MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
                     RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA"
BASE COUNT        12565 a        13025 c        14642 g        12809 t
ORIGIN      
        1 ttaaaatcac catcatacac taaatcagta agttggcagc attaccgaca tgtcgttgtt
       61 cagcgttcct ttgctattac caaagaaaac agaaccgaag gtcattttag ctgtactacc
      121 tggattcgga tttgctttgc tgcagtcaac ggtgatgctg aaaggtttgg ctttagcgcc
      181 aacggtgtca ttcagcacgc cagcatcgat ttcaccaaca gttgcagttt gcagcaggat
      241 cagaccatct ttattaccgc cgtcaacgcg ggtttcacag gtgttatcaa caaccagacc
      301 actgatattt aactgaccac catccatatc agcagaagca gtacctgcaa ccattgccag
      361 cataagacca gacagggcaa aacctaattt tttagacata aaaatccttg aataaaattc
      421 cattagtcag actactggtt tgaagaatga ctattcatga cacaaatgtt ataagcagat
      481 gctagatatt aatgagtaat gatatttgtt accaaaattt acaactattg ttcattagga
      541 cgcctattgt gcactttaag ggcttttgaa caaattaaat tttcttaatt caaaattaag
      601 caaaaataaa ttcacaagtg caattggtta gggtatggcg atgggattga tatttatctg
      661 cgggaattta tattatgttt ctgcaaaaat gtttaaacta aaatttttat taaggaaaga
      721 gaggatgtat gattttcaga aaatatttat attcgtaata taaataaatt accatttgct
      781 taattcgtca aatgctcttg tatgtaagac ttcacgcaac gtctccccat caggaaacgc
      841 cagctccggt gcaatctcaa acagcggcca cagcataaat ccacgattct tcatatcgta
      901 gtgcggaacg gtcaggcgtt cggtatttat cacttcatta ccaaacagca tgatatcgag
      961 atccagcgtg cgtggtcccc agcgttcagc tttacgaaca cgatcctgtt gcagttctat
     1021 gcgctgtgta tggttgagta actcttccgg ggcgagcgaa gtttcaagcg ccacggaggc
     1081 gttgaggtaa tcgggttgat cttgcggccc cagcggtgga gtgcggtaaa acgaagaaac
     1141 ggcaagaatg tggctttcag ggatatcgcc taatgctttc agggcagcat tgacctgctc
     1201 cagcggagag gccagattgc tgcctatggc aatatacgcc actgtcatgc ggtaccctca
     1261 cgacgcggtg cgcgtttgcg tggacgacga gtacggcgac gcggtgacgg ctcttcatcc
     1321 aactcgttaa gcatcccttt ttgatctggt ggcgcggaaa cctggaactc accccaccat
     1381 ttcaccagac gctgcagttc agcgttacgt tcaacttcag ctcgcaaggc caacaggtca
     1441 taagccgcac ggaacttagg atgctccagc agtttccatg cgcgtttacc ctgacgacgg
     1501 gacatacgca actgcaactg ccagatatcg cgggttaacg tcgtcagacg tttcgggatt
     1561 gccagtgaac ggcaggcttc gtccagcacg tcgttcatcg ccagcgcgaa agcgtcgtga
     1621 taggtcaggc cgctttcctg ggcgatcttc tgtgccgtct ccagcagtgg gtaccagaac
     1681 atggcggcaa acaagaacgc cgggttcacg cgcatatcgt tatggatacg cgtatcggta
     1741 ttcttcagca cctgttcaat gatccgctcc atcgggctgt cgccattttc cgtgaagtag
     1801 cgggtaatgg tcgggaacag cggctggaac agatgatatt cacacaacag cttataggtt
     1861 tcgtaaccgt agcccgcttg tagcagttta agcgattctt caaacaggcg tgccggtggg
     1921 atatcgttca gcagggtagc gaggcgaggg atcggttctg cggtttccgg gctgatgcgc
     1981 atacccaatt tggcggcaaa acgtaccgcg cgcagcatac gtaccggatc ttcacggtag
     2041 cgcgtttccg ggttaccaat cagacggata acgccgtcct tcagatcctt catgccgcca
     2101 acgtaatcac ggacggtaaa atccgctacg ctgtaataca ggctgttgat agtgaaatcg
     2161 cggcgctggg cgtcttcttc gatggagccg aaaatgttgt cgcgcagcaa catgccgttt
     2221 tgcccgcgtt gggaggtcgt gcggtcgctg acgttacctt cgtggtgtcc acggaaggtt
     2281 gcaacttcga taatctccgg gccaaacatc acatgagcca gacggaaacg gcgacccaca
     2341 aggcggcagt tacggaacag tttgcgcacc tgctcaggcg tggcgttagt ggttacgtca
     2401 aaatctttcg gctttttgcc aagtaacagg tcgcgcacgc cgccgccaac cagccaggct
     2461 tcgtatcccg ctttattgag cctgtacatt accttcaggg cattttcact gatatctttg
     2521 cgggaaatag catgctgctc acgcgggatc accgtcacct gtggacgggc gactgcctgt
     2581 tcagcctcgc tttcctcgcg gcttagcacc ttgcggcaaa aattagcgac tcgggtaaaa
     2641 atagtacacc tcggtagtgt caaacatcat tcaggacaaa aaaatagcgg ctaatcatag
     2701 ctcagcatga cgcatttgag aatgttgaat ttacaattgc cgactcgggc acggcggtca
     2761 gcgtccagtt tttgacggct gactgaagga tttgctcgac gctgaaatcc tgccagtgtg
     2821 cttctgccag ctgccccaga aattgaagtg ccgcgattag taccgggcgt ggatcgcctt
     2881 tcggcaacgc aggcgcatga ttctgcttgg aaagtttagc gccttgtgga ttaagcgcca
     2941 gcggcagatg aatgtaatct ggcactttcc agccaaaaag ctggtacagc gagatttgcc
     3001 ttactgttgg ttcaatcaga tcagccccac gcactatttc tgtaacgccc tggaaatgat
     3061 catcaaccac aacagccagg ttgtaggcga acaacccatc acggcgatga atgataaaat
     3121 cttcccgtgc cagtttttcg tcggcgtgaa taatgccgcg cagctggtca gtaaattgcg
     3181 tgaccggatg ctgctggcgg atacgcactg cggcgttgtc tggtccatga tgcaacaccc
     3241 ggcaatgacc gtcgtaaata ccgacaatgc tttgaatacg cgcacgcgta caggtgcagt
     3301 aataacttag tccttgttca tgtaaccagg cgagtgcttc acgataggcg tcgtgacgtt
     3361 gcgattgcca gagaacatcg ccgtcccagt gcagaccgta atgttccagc tggcgcagga
     3421 tagtttctgc ggcaccggga acttcacgag gcgggtcgat atcttctatg cgtaccagcc
     3481 agcgaccttg ccgggcgcga gcctgcaaat agctgccgag cgcggcgatc agagagccaa
     3541 aatgaagctc gccggaagga gagggagcga agcggccaat atactgtgtg tctgtcatct
     3601 ctttgaacaa aaaataaggc gggagcattt cccgcctgtg gtaaacgtga tggaacggct
     3661 gtaattagcc agccatctgt ttttcgcgaa tttcagccag cgttttgcag tcgatgcaca
     3721 gatcggctgt cgggcgcgct tccagacggc gaataccaat ttcaacaccg caggattcgc
     3781 agtagccgaa atcttcgtct tccacttttt tcagcgtctt ctcgatcttt ttgatcagct
     3841 tacgctcgcg atcgcggtta cgcagttcga ggctgaactc ttcttcctgg gctgcacggt
     3901 ctaccgggtc cgggaagttg gctgcttcat cctgcatatg tgtaacggtg cgatcgactt
     3961 catccctgag ttgattacgc catgcttcca gaatacgacg gaagtgcgcc agctgggctt
     4021 cattcatata ctcttcgccc ggcttctcct gatatggttc caccccagcg atggcgagaa
     4081 tactcaggga cgatgtttta cggttttgcc cttcttgcat gttgcttctc cttaacacgc
     4141 actatcgatc cccatgttcg ggggaaaaat gaggccgcta taaatagcag atgcttttcc
     4201 ggatagcaat tatctaaacg taacacttga caactgtgtg aggaaaagcg tatttgcgca
     4261 cgcgaccaga atgtaaatta accagttact tactttacta caatgtaacc ggcagtgatt
     4321 ttttaagagc catgctttca gcagaaattt ccgctttgta agccagaatt tctacccccc
     4381 tctgttgagc ttctgacaat agttgcgcgt atttctcatc gatgtggcgc gcgggtgaaa
     4441 accgtgtaat ggctgaatgc agcacggcga aaaagataac cgcacgcagg ccttcagccg
     4501 ctacgttcat caactcccga aggtgtttct gacctcgttc agtgaccgca tcgggaaaat
     4561 atccctgttc gttctccgct aacgtaaccg atttcacttc aatatagcag tctggacgcg
     4621 aatccgcctg caacataaag tcaatacggc tgcgttctgc gccatatttt acttcgcttt
     4681 tcagcgagct atagcctgac agttctgaaa ttgattcatt aaggatagcc tctttcgtca
     4741 acctgttagc ccaaagcgta ttgacgcaaa taaatgcgcc gctctggctt tgagttagtt
     4801 cccaggtgtg tgggtatttc cgtttggtgt tgtctgaagt cgaataccag acggtatcgc
     4861 cacgcgttgc acaaccggtc atcgcacccg tattcgggca gtgtagcgtt aattcgcgac
     4921 catcgggtgt gatcacatcg gctaaaaaac gtttgtaacg ctgaattagc gtcgcgcgct
     4981 gtagaggggg agagaattcc attgcgacaa tccttgttat tgcattagcg cccagcgttt
     5041 tagcggcgtg tagcgtgtgc gtccacgggc aaacgaggag gcgtaaaggg tgaactccgt
     5101 caccgcataa gaccagttaa aacctggcgg cgggattgtc accgcctcgc tggcgtcgcg
     5161 caataaggta atatgtggat gaaacggacg attgctttga aaacaaccgc tgcgggcagc
     5221 ctgtgaacgg agcatattcg ccagctggat taagccgcgt ggcggctgac gcatccctaa
     5281 ccacaccaca cgcgaacgca gccattgtcc ggcgtcatca agcgtgagtg tgaaaccagg
     5341 ttgacgaatc cgtccggcta aaagagaaag cgccttctct ttctcggcgc tcacttcgcc
     5401 taaaaatgcc agagtcagat gcaaattatc ggcggcgacc ggacgtcccg cctcaggtgg
     5461 gaagtgtgtg gcgcgccagt ggataatctg ttcgcggatt tctgcaggta agtcgatagc
     5521 aaagaacaga cgttgcggtt cagacatgtg aggcactcgg ttatgaatta ccgcgatgct
     5581 acaatgtggc gcgaagaatg ttaaccctct ggagcgtttt gtgtcgtcgt tgcccgttgc
     5641 tgccgtctta cctgaattac ttaccgctct cgattgtgcg ccgcaggtat tattaagtgc
     5701 gccgaccggg gccgggaaat caacctggct gccgctgcaa ctgctggcgc atcccggcat
     5761 taacgggaaa attatcctgc tggagccgcg tcgtctggcg gcgcgtaacg tcgcgcaacg
     5821 gctggaggag ctgcttaacg aaaagccagg cgataccgtt ggctaccgga tgcgtgcgca
     5881 aaactgcgtc gggccgaata cccgcctgga agtagttacc gaaggcgtgc tgacgcggat
     5941 gatccagcgt gacccggagt tgagcggtgt tggattggtg atccttgatg aatttcatga
     6001 gcgtagcttg caggcggatt tggcgttggc gctgttactc gatgtgcaac aaggtctgcg
     6061 tgatgacctt aaactgctaa ttatgtcggc tacgctggac aacgaccgct tgcagcaaat
     6121 gctgccagaa gcgtccgtcg tcatctcaga agggcgctcg tttccggttg aacgccgtta
     6181 tttaccgctg cccgcgcatc agcgttttga cgatgccgtt gcggtagcca ccgctgaaat
     6241 gctgcgtcag gaaagcggat cattactgtt atttttacct ggcgtcggag aaattcagcg
     6301 tgtgcaggaa caactggctt cgcgcatcgg cagtgatgta ttgctctgcc cgctgtatgg
     6361 cgcgttgtcg ctgaacgatc agcgaaaagc gatcctcccg gcaccgcaag ggatgcgcaa
     6421 agtggtgctg gcgaccaata ttgctgaaac cagtttaacc atcgaaggta ttcgtctggt
     6481 ggtggattgt gcccaggagc gtgtggcgcg ttttgatccg cgcacggggc taacgcgact
     6541 gattactcaa cgcgttagcc aggcatccat gacgcagcgt gccgggcgcg ccgggcgtct
     6601 ggagccgggt atctgcctgc atctaatcgc caaagaacaa gcagaacgcg ctgccgcgca
     6661 aagtgaaccg gaaatcttac aaagcgatct ttccggtttg ctgatggaat tactgcaatg
     6721 gggatgcagc gatccggcgc agatgagctg gctggatcaa ccgccaacgg tgaatctact
     6781 ggccgcgaaa cgcctgttac aaatgctggg ggcgctggag ggtgaacggc ttagtgcgca
     6841 ggggcaaaaa atggcagcgc tgggtaacga tccgcgttta gcggcaatgc tggttagcgc
     6901 gaagaacgac gacgaagctg ctaccgcggc aaaaattgcc gccattctcg aagagccgcc
     6961 acggatgggc aatagtgacc tgggcgtggc gttttcgcgc aatcaaccag cctggcagca
     7021 acgtagtcag caactgttaa aacgcttaaa cgtacgtggc ggtgaggcag acagttcgct
     7081 tatcgcgccg ctacttgccg gggcgtttgc cgatcgcatt gctcgtcgcc gtgggcaaga
     7141 tggacgctat caacgggcaa acggcatggg agcgatgctc gatgccgacg acgcgctaag
     7201 ccgccacgaa tggttgatcg caccgttatt attgcagggc agcgcctcgc cggatgcgcg
     7261 gattttactg gcgctgccgg tcgatattga tgagttagta caacgctgcc cgcagctggt
     7321 acagcagtct gacactgtgg agtgggatga cgcgcaaggt acgctgaaag cctggcgtcg
     7381 gctgcaaatc ggtctgctga cggtgaaagt gcagccgctg gcgaaaccct cggaagacga
     7441 gttgcatcag gcgatgctta atggcatccg tgataaaggt ttaagcgtgc tcaactggac
     7501 ggcggaagcg gaacagctac gcttgcgttt gttatgcgcc gcaaagtggt tgccggaata
     7561 tgactggcca gcggttgatg atgaaagttt attggcgacg ctggaaacgt ggctgctgcc
     7621 acatatgact ggcgtacatt cactacgcgg cctgaaatca ctcgacattt atcaggcact
     7681 acgcggatta cttgattggg gaatgcagca acgtctggat agtgaattgc ctgcgcatta
     7741 cactgtgccg acgggaagcc ggatcgctat tcgttatcat gaagataacc cgcccgcgct
     7801 ggcggtgaga atgcaagaga tgtttggcga ggccaccaat ccgacgatcg cccaggggcg
     7861 cgtgccgctg gtgctggagt tgctttcacc tgcccaaagg ccattacaaa tcacacgaga
     7921 tttgagcgcc ttctggaaag gagcgtaccg tgaggtgcaa aaagagatga aagggcgtta
     7981 tcccaaacat gtctggccgg acgacccggc aaatactgca ccgacgcgac ggacgaaaaa
     8041 gtattcgtaa ggttggtttt ctccctctcc ctgtgggaga gggccggggt gagggcatca
     8101 gcgcgcacgt tcaccctcac cctaaccctc tccctcaagg gagaggggac cgatcgaaca
     8161 caaattttga gagatatctt cttctgtctt gtaacagaag aacagaaaat cgggcttttg
     8221 cgcctgaata ttgcggagaa aaagcatggc cgggaatgac cgcgagccaa ttggacgcaa
     8281 agggaaaccg acgcgtccgg tcaaacaaaa ggtaagccgt cgtcgttacg aagatgacga
     8341 tgattacgac gattatgatg actatgagga tgaagaaccg atgccgcgca aaggtaaggg
     8401 caaaggcaaa gggcgtaagc ctcgtggcaa acgcggctgg ctatggctac tgctaaaact
     8461 ggctatcgtt tttgccgtgc tgatcgccat ttacggcgtt tatctcgatc aaaaaattcg
     8521 tagccgtatt gatggcaagg tctggcaact gcctgcggca gtttatggcc gaatggtcaa
     8581 tcttgagcca gatatgacca tcagcaagaa cgagatggtg aagctgctgg aggcgactca
     8641 gtatcgtcag gtgtcgaaaa tgacccgtcc tggcgaattt accgtgcagg ccaacagcat
     8701 tgagatgatc cgccgtccgt ttgatttccc ggacagtaaa gaagggcagg tgcgtgcgcg
     8761 tctgaccttt gatggtgatc atctggcgac catcgtcaat atggagaaca accgtcagtt
     8821 cggctttttc cgtcttgatc cgcgtctgat caccatgatc tcctcgccaa acggtgagca
     8881 acgtctgttt gtgccgcgca gtggtttccc tgatttgctg gtggatactt tgctggcgac
     8941 agaagaccgc catttctacg agcatgatgg gatcagcctc tactcaattg ggcgtgcggt
     9001 gctggcaaac ctgaccgcag gtcgcacggt gcagggtgcg agtacgctga cgcaacagct
     9061 ggtgaaaaac ctgttcctct ccagcgagcg ctcttactgg cgtaaagcga acgaagccta
     9121 catggcgctg atcatggacg cgcgttacag caaagaccgt attcttgagc tgtatatgaa
     9181 cgaggtgtat ctcggtcaga gcggcgacaa cgaaatccgc ggcttcccgc tggcaagctt
     9241 gtattacttt ggtcgcccgg tagaagagct aagcctcgac cagcaggcgc tgttagtcgg
     9301 tatggtgaaa ggggcgtcca tctacaaccc gtggcgtaac ccgaaactgg cgctggagcg
     9361 acgtaatctg gtgctgcgtc tgctgcaaca gcaacagatt attgatcaag aactctatga
     9421 catgttgagt gcccgtccgc tggggggtca gccgcgcggt ggggtgatct ctcctcagcc
     9481 agcctttatg caactggtgc gtcaggagct gcaggcaaaa ctgggcgata aggtaaaaga
     9541 tctctccggc gtgaagatct tcactacctt tgactcggtg gcccaggacg cggcagaaaa
     9601 agccgccgtg gaaggcattc cggcactgaa gaaacagcgt aagttgagcg atcttgaaac
     9661 tgcgattgtg gtcgtcgacc gctttagtgg tgaagttcgt gcgatggtgg gaggttctga
     9721 gccgcagttt gcgggctaca accgtgcgat gcaggcgcgt cgttcgattg gttcccttgc
     9781 aaaaccagcg acttatctga cggctttaag ccagccgaaa atctatcgcc tgaacacgtg
     9841 gattgccgat gcgccaatcg cgctgcgtca gccgaatggc caggtctggt caccgcagaa
     9901 cgatgaccgt cgttatagcg aaagcggcag agtgatgctg gtggatgcgt tgacccgttc
     9961 gatgaacgtg ccgacggtaa atctggggat ggcgctgggg ctgcctgcag ttacggatac
    10021 ctggatcaaa ctgggcgtac cgaaagatca gctgcatccg gttccggcga tgctgctggg
    10081 ggcgttgaac ttaacgccaa tcgaagtggc gcaggcgttc cagaccatcg ccagcggtgg
    10141 taaccgtgca ccgctttctg cactgcgttc ggtaatcgcg gaagatggca aggtgctgta
    10201 tcagagcttc ccgcaggcag aacgcgctgt tccggcgcag gcggcgtatc tgacactatg
    10261 gaccatgcag caggtggtac aacgtggtac gggtcgtcag cttggggcga aatacccgaa
    10321 cctgcatctg gcagggaaaa cagggactac caacaataac gtagatactt ggtttgcagg
    10381 cattgacggc agcacggtga ccatcacctg ggtaggccgt gataacaacc agccgaccaa
    10441 actgtatgga gccagcgggg caatgtcgat ttatcagcgt tatctggcta accagacgcc
    10501 aacgccgctg aatcttgttc cgccagaaga tattgcagat atgggcgtgg actacgacgg
    10561 caactttgtt tgcagcggtg gcatgcgtgt cttgccggtc tggaccagcg atccgcaatc
    10621 gctgtgccag cagagcgaga tgcagcagca gccgtcaggc aatccgtttg atcagtcttc
    10681 tcagccgcaa cagcaacctg ctcagcaaga gcagaaagac agcgacggtg tagccggttg
    10741 gatcaaggat atgtttggta gtaattaaca tctaagcgtg aaataccgga tggcgagttg
    10801 ccatccggta aaataacatc ccatctaaga tattaaccct ttcttttcat ctggttgttt
    10861 attaaccctt caggaacgct cagattgcgt accgcttgcg aacccgccag cgtttcgaat
    10921 attatcttat ctttataata atcattctcg tttacgttat cattcacttt acatcagaga
    10981 tataccaatg gcgcgttcca aaactgctca gccaaaacac tcactgcgta aaatcgcagt
    11041 tgtagtagcc acagcggtta gcggcatgtc tgtttatgca caggcagcgg ttgaaccgaa
    11101 agaagacact atcaccgtta ccgctgcacc tgcgccgcaa gaaagcctat gggggcctgc
    11161 tgcaactatt gcggcgaagc actctgctac tgcgactaaa acggatacac caattgaaaa
    11221 aacgccgcag tctatttcgg ttgtgacaaa tgaagagatg cagatgcatc aatttcagtc
    11281 tgtaaaagaa gcattaggtt atacacctgg cgttacggtt agcagtcgtg gtgcttctaa
    11341 tacatatgat tttgttatca ttcgtggttt ctcatctgtt ggtctgaatc aaaataatta
    11401 ccttgatgga ctaaaacttc agggcaactt ttataacgat gctgtgattg atccttacat
    11461 gctcgagagg gttgaactga tgcgtgggcc gacgtctgtt ctctatggaa aaagtaatcc
    11521 tggtgggatt atttctatgg tgagtaagcg tccgaccact gaacccctga aagaaattca
    11581 gtttaaaatg gggacggata atctgtttca gaccggattc gatttcagtg atgcactgga
    11641 tgataacggt gagttctctt accgtttgac gggcctcgct cgctcaacaa acgaacagca
    11701 gaaaaactct gaatctcagc gttataccat tgctccatca ttctcatggc gtccagacga
    11761 caaaaccaat tttactttcc tgtcctattt ccagaatgaa ccagaaacgg gttattacgg
    11821 ttggttgccg aaagagggga ccgttgagcc attgcctaat ggtaagcgtc taccgactga
    11881 cttcaatgaa ggtgcatcga ataatacata ctcccgtaac cagaaaatgg tgggatatag
    11941 ttttgaacat ggttttaatg acaccttcac cgtgcgtcag aatctgcgtt tcagtgaaat
    12001 gaaaacctca cagaaaagtg tttatggcac agggattgct ggtgatggtc ataccctaaa
    12061 ccgcgggaca gtggtggata atgagcgtct acaaaacttt agcgttgata cccaacttga
    12121 aagtaagttt gctacaggtg acgtcgagca tactttgctg acaggggtag acttcatgcg
    12181 gatgcgtaat gatatcaatg ccagctttgg atccgcacca tccatcgatc tttataacaa
    12241 atatcaccct gaatactttg catttggtag cgcagagcca taccagatga atgaaagcaa
    12301 acaaacaggt atttatgttc aggatcaggc ggaatggaat aaatgggtat tcactctggg
    12361 gggacgctac gattggtcta agcaagcgac cactgttcgt gaaaactctt atacgccgac
    12421 tgaaggttat attgagcgca atgatcatca gttcacctgg cgcggtggtg taaattactt
    12481 attcgataat ggtatttcac cttactttag ctatagccag tcctttgaac cgagtgcttt
    12541 cgatctgtgg agcaacccac gcatttccta taagccatcg aaaggtgaac agtatgaagc
    12601 tggcgtaaaa tatgttccga atgatatgcc ggtcgttgtt acgggcgcag tctatcaatt
    12661 gacgaaaaca aataacctga cagcagaccc aacaaaccca ttagcgcaag tcccagcagg
    12721 tgagattcgc gctcgtggtg tggaacttga agcaaaagcg gcgttaaatg ccaatattaa
    12781 cttgacggct tcttatacct acaccgatgc ggaatacacc aaagacacca atctcaaagg
    12841 taaaactcca gaacaagtac cggagcatat ggcatctctc tggggggatt ataccttcaa
    12901 tgaagggccg ctttctggtt taacattggg aacaggtggt cgttttattg gttccagcta
    12961 tggtgatccg gcaaacactt ttaaagtggg tagcgcagct gtaatggatg ctgttgtaaa
    13021 atatgatctg gcacgctttg gtatggcggg atccagcctt gctgtgaacg tcaacaattt
    13081 gctcgatcgt gagtatgttg ccagttgctt ccagacttat ggctgcttct ggggcgcaga
    13141 acgtcaggtc gttgcaaccg caaccttccg tttctaattt ctcttttggg gcacggattt
    13201 ccgtgcccat ttcacaagtt ggctgttatg caggaataca cgaatcattc cgataccact
    13261 tttgcactgc gtaatatctc ctttcgtgtg cccgggcgca cgcttttgca tccgctgtcg
    13321 ttaacctttc ctgccgggaa agtgaccggt ctgattggtc acaacggttc tggtaaatcc
    13381 actctgctca aaatgcttgg ccgtcatcag cctccgtcag aaggggagat tcttcttgat
    13441 gcccagccgc tggaaagctg gagcagcaaa gcgtttgccc gcaaagtggc ttatttgccg
    13501 cagcagcttc ctccggcaga agggatgacc gtgcgtgaac tggtggcgat tggtcgttac
    13561 ccgtggcatg gcgcgctggg gcgctttggg gcggcagatc gcgaaaaagt cgaggaagct
    13621 atctcgctgg ttggcttaaa accgctggcg catcggctgg ttgatagtct ctctggcggc
    13681 gaacgtcagc gggcgtggat cgccatgctg gtggcgcagg atagccgttg tctgttgctc
    13741 gacgaaccga cctcggcgct ggatatcgcc caccaggttg atgtgctggc gctggtgcac
    13801 cgtttaagtc aggagcgtgg cctgacggtc attgccgtgt tgcacgatat caatatggcg
    13861 gcacgctact gtgattatct ggtcgccctg cgcggtggtg aaatgattgc tcagggaacg
    13921 cctgcggaaa ttatgcgcgg cgataccctc gaaatgattt atggcatccc gatgggtatt
    13981 ttgccgcatc cggcgggtgc tgcacctgtg agttttgttt attgatgagc ggcttacctc
    14041 ttatttcgcg ccgtcgactg ttaacggcga tggcgctttc tccgttgtta tggcagatga
    14101 ataccgccca cgcggcggct attgatccca atcgtattgt ggcgctggag tggttgccgg
    14161 tggaattact gctggcgctc ggcatcgtgc cttacggcgt ggcggatacc atcaactatc
    14221 gcctgtgggt cagcgaacca ccattgccgg actcagtgat cgacgtcggt ttgcgcacag
    14281 aacctaacct tgaactgctg accgaaatga aaccgtcgtt tatggtctgg tcggcaggat
    14341 atggcccttc agcagaaatg ctggcacgta ttgcgccggg gcgtggattt aacttcagcg
    14401 acggcaaaca gccgctggcg atggcgcgta aatcactgac ggaaatggca gatttactta
    14461 acctgcaaag cgcagcagaa acgcatttag cgcaatatga agactttatc cgcagcatga
    14521 aaccccgctt tgtgaagcgt ggtgcacgcc cgttattgct gacgacgctt atcgatccgc
    14581 gccatatgtt ggtcttcggt ccaaacagct tgttccagga aattcttgat gagtacggca
    14641 tcccaaatgc ctggcaaggg gaaaccaact tctggggcag taccgccgtc agtatcgatc
    14701 gtctggcagc gtataaagac gttgatgtgc tctgttttga tcacgacaac agcaaagaca
    14761 tggatgcgct aatggcaacc ccgctgtggc aggccatgcc gtttgtccgc gctggacgct
    14821 ttcagcgcgt acccgcagtc tggttttatg gtgcgacgct ctcggcaatg cactttgtgc
    14881 gcgttctgga taacgccatc ggaggtaaag cgtgagtaaa cgaattgcgc ttttcccggc
    14941 gttattgctg gcgctgctgg tgattgtcgc tacggcgctg acctggatga acttttcgca
    15001 ggcgctgccg cgtagccagt gggcgcaggc cgcctggtcg ccggatattg acgtcatcga
    15061 gcagatgatt tttcactaca gcttgctgcc gcgtctggct atttcgctgc tggtgggcgc
    15121 aggcctgggg ctggtgggcg tgctgtttca gcaagtgctg cgtaatccgc tggcggaacc
    15181 gacgacactt ggcgttgcta caggcgcgca actggggatt accgtcacta cgctctgggc
    15241 gatcccaggg gcgatggcga gtcagtttgc tgcgctggcg ggcgcttgcg ttgttggctt
    15301 aattgtcttt ggcgtcgcgt gggggaaacg gctttcgccg gtaacgctga tcctcgcggg
    15361 gctggtagtg agcctttatt gtggggcaat caatcagtta ctggttatct tccaccatga
    15421 ccaactgcaa agcatgttcc tgtggagcac cggaacgctg acgcaaaccg actggggcgg
    15481 tgttgagcgt ttatggccgc agttgctggg cggtgtgatg ctgacgttgc tgctacttcg
    15541 cccgttaacc ctgatggggc ttgatgatgg cgtggcgcgc aatctcgggc tggccttgtc
    15601 gctcgcgcgt ctggcggcgc tgtcgctggc gattgtcatc agtgcgctgc tggtgaacgc
    15661 ggtggggatt atcggcttta tcgggttgtt tgcgccgttg ctggcaaaaa tgctggggtc
    15721 gcggcgtctg ctgccgcgac tgatgctggc gtcgttgatt ggtgcgctga tcctctggct
    15781 ttccgatcaa atcatcctct ggctgactcg cgtgtggatg gaagtgtcca ccggttcggt
    15841 cactgcgttg atcggtgcgc cgctgctact gtggctgttg ccgcgtttac gcagcattag
    15901 cgcgccggat atgaaggtca acgatcgtgt cgcggctgaa cgccaacatg tgctggcgtt
    15961 tgccctcgcg ggcggcgtgc tgctgttgat ggctgtggtg gtggcgctgt cgtttggtcg
    16021 tgatgcgcac ggctggatgt gggcgagcgg ggcgttgctc gatgatttaa tgccctggcg
    16081 ctggccgcga attatggcgg cgctatttgc gggcgtcatg ctggcggtgg cgggctgtat
    16141 tattcagcga ctgaccggca acccgatggc aagcccggaa gtgctgggga ttagctccgg
    16201 cgcagcgttt ggcgtggtac tgatgctgtt tctggtaccg ggtaatgctt ttggctggct
    16261 gttacccgcg ggaagtatcg gtgccgcggt gacgctgttg attattatga tcgccgccgg
    16321 gcgcggtgga ttttccccac accgcatgtt actggcgggg atggcgttaa gtaccgcatt
    16381 caccatgctt ttaatgatgt tgcaggcgag tggtgacccg cgaatggcgc aagtgctcac
    16441 ctggatctct ggttcgacct acaacgccac cgatgcgcag gtctggcgta ccggaattgt
    16501 gatggtgatt ttgctggcga ttaccccgct gtaccgccgc tggctgacca ttttacctct
    16561 gggcggtgat accgcacgag ctgtgggaat ggcgctgacg ccgacgcgaa ttgcgctgct
    16621 gctgttagcg gcttgcctga cggcgaccgc gacgatgact attggaccgt tgagttttgt
    16681 tggtttaatg gcaccgcata ttgcgcggat gatgggtttt cgacggacga tgccacacat
    16741 cgtaatttcg gcgctggtgg gtggtttact gctggtattc gctgactggt gtgggcggat
    16801 ggtgctgttt ccattccaga tcccggcggg gctgctgtcg acctttatcg gcgcgccata
    16861 ttttatctat ttgttgagaa agcagagccg ttaattgagt gcctcgcccg gtgggcgagg
    16921 caaaattatc acaacttcgc aaatacccga cgtgcagcat cgatggtgtt attgatatct
    16981 tccatgctgt gcgccacaga cataaagccc gcttcaaacg ctgacggtgc caggtaaaca
    17041 ccttcgtcca gcatcatatg gaagaaacgc ttaaagcgtt ccacgtcaca ggccatcaca
    17101 tcctgatagc acgtcacgga ctcggcgtcg gtaaagaaaa taccgaacat gccgccaacg
    17161 tggttaacga ccagcggagt tccggcttct tctgccgctt ccagcagacc ttctgccaga
    17221 cgtgttgtca gctcatccag cgtttcgtga acgcccggct gcgcgacttc attcagacag
    17281 gcgaaacccg ctgccatcgc aatcgggtta ccggaaagcg tacccgcctg atagaccgga
    17341 cccgtcgggg ccagcgcatc cattacatca cgacgaccac cgaatgcgcc taccggcatt
    17401 ccaccgccga tgattttgcc gaggcaggtt aaatctggca ctacgccgta ataatcctgt
    17461 gcgccagcca gtgccacgcg gaagccggtc atcacttcat cgatgatcag caacgcgcca
    17521 aattcgtcgc acagcgcacg cagacctggc aggaactctg gctgcggcgg aacacagttc
    17581 atattgcctg ccaccggctc gacgataata caggcaatct cttgcgggta ttgctcaaac
    17641 gcggcgcgta cagaagccag atcgttataa gtacaggtta aggtatgttt ggcgaaatct
    17701 gccggaacac ccggcgagtt tggctggcct aacgtgagtg cgccagaacc ggctttcacc
    17761 agcaggcagt cagcgtgacc gtggtaacaa ccttcaaatt taatgatttt gtcgcgaccg
    17821 gtaaaaccac gggccaggcg gatggcgctc atggtcgctt cagtgccgga gttcaccatg
    17881 cgtaccatat ccatggtcgg gaccagttcg gtcaccagtt gcgccatttt cacttccatt
    17941 tcggtcggtg caccaaagct taaaccacgc tcggcggctt caatcacggc attgcggata
    18001 gccggatggt tatggcccag caccatcggc ccccaggaac cgacataatc gatataggct
    18061 ttgccatcaa catcgtacag ataagcgccg tccgcttttt cgataaacag tggagtgccg
    18121 cccacgccag taaaggcgcg aacaggggag ttcacaccgc cagggagcag ctcgcgcgct
    18181 gcgctgtaaa gattttcaga cttactcatg gagggttcct gattcgtaga aaaagtgaat
    18241 ggctgctatt ctatgttatt cataacaagt taaatactcg tcaaacatca ggctgcttgt
    18301 actggtgcaa tcctgatttc ttagagtata aaagttttgt gcatttgaaa cattacgctt
    18361 tgcaaaggat tttcatggaa cgcgcgagta aaatgccgtc atcttatttg tatgaccaat
    18421 aagtgatcat tggatgaaaa ctgatactcc ctctttagaa acaccgcagg ccgcgcgcct
    18481 gcgacgcaga caactgattc gccaacttct tgagcgcgat aaaaccccgt tagccatttt
    18541 gtttatggcg gcagtcgtcg gcacgcttgt cgggctggca gcggttgctt ttgacaaagg
    18601 tgtcgcctgg ttgcagaacc aacgtatggg ggcgctggta catactgctg ataattatcc
    18661 gcttctgtta accgtcgctt ttctctgttc ggcggtgctg gcgatgttcg gctacttttt
    18721 ggtgcgcaaa tacgcgccgg aagcaggtgg ttcggggatc ccggaaattg aaggggcgct
    18781 ggaagatcaa cgtcccgttc gctggtggcg tgtgttgccg gtgaaattct ttggcgggct
    18841 ggggacactc ggcggaggca tggtgctggg gcgcgaaggg ccaaccgtgc agatcggcgg
    18901 caatatcggt cgcatggtac tcgatatttt ccgcctgaaa ggtgatgaag ctcgccatac
    18961 gctgctggca accggtgctg ctgcggggct ggctgcggcc tttaacgcgc cgctggcagg
    19021 tattttgttt attatcgaag agatgcgtcc gcagtttcgc tatacgttaa tttcgattaa
    19081 agcggtattt attggcgtca ttatgtcgac cattatgtac cggattttta atcatgaagt
    19141 tgcgttgatt gacgtcggta aactttctga tgcgccgctt aatacgcagt ggctttatct
    19201 gatcctcggt attatttttg gcattttcgg ccctattttt aataaatggg tgctggggat
    19261 gcaggatttg ctgcaccgtg tgcacggcgg caatattacc aaatgggtgc taatgggcgg
    19321 tgcgattggc ggtctgtgtg gattgctggg gtttgtggca ccagcaacgt cgggcggcgg
    19381 ttttaacctg attcctatcg ctaccgcagg gaatttcagc atgggaatgc tggtgtttat
    19441 cttcgtcgcg cgggtcatta ccaccttact gtgcttctct tccggcgcgc cgggcggtat
    19501 ttttgccccg atgctggcgc tgggtactgt gctgggaacc gctttcggaa tggttgtcgt
    19561 tgagctgttt ccgcaatatc accttgaggc ggggactttt gctattgccg gaatgggggc
    19621 gttactggcg gcatctattc gcgcgccgtt aacggggatc attttggttc tggagatgac
    19681 cgataactac cagctcattt tgccaatgat tattaccggt cttggcgcaa cactattagc
    19741 gcaatttacc ggcgggaaac cgctatattc ggcgattctt gcgcgcacgc tggcaaaaca
    19801 ggaagctgag caactggcgc gaagcaaggc cgcatcagcc agcgagaata cttgaacgaa
    19861 ataccagggt attagataat ggcgattatt attgggttag aatttgccca attgccgatg
    19921 tcgtttggag caaaatatga gtgatgacgt agcactgccg ctggagttta ccgacgcagc
    19981 agccaacaaa gttaaaagcc tgatcgctga cgaagataac ccgaatctga aattacgcgt
    20041 gtatatcacc ggtggcggtt gcagcggctt ccagtatggt ttcacctttg atgatcaggt
    20101 gaacgaaggc gatatgacca tcgaaaaaca gggcgttggc ctggtggttg atccgatgag
    20161 cctgcaatat ctggtcggtg gttccgttga ctataccgaa ggactggaag gttctcgttt
    20221 catcgtgacc aacccgaacg cgaaaagcac ctgcggttgc ggttcttcct ttagcatcta
    20281 atctgttgtt catgtgccgg ataaactatc cggcatatct tctctcttca acgcccattc
    20341 tcatccagcg caaacgtcgg tagcttaaga tgccaacgaa tagccgccag ccgaatcaat
    20401 agcgtcacga ccatgcccat catactggct gtttccagtg gtacggaaaa tgtgtaataa
    20461 gccgtagcgt ggacaatacc gccgataata caggcagttg cgtagatttc tgtacgtaaa
    20521 atcatgggga tttcgcgggc cagtacatca cgaatgatcc cgccgccaac gccagtaatg
    20581 acgcccatac aaaccgcgat taacggaccg gcttccgcat taaaggcttt attcacgcca
    20641 atgccgacaa acaccgccag accaacggcg tccagcaccg gcaacatcca ttttggtaag
    20701 cgtcttggct ggcgcaccag cacgatggtc agcatgctgg ttaccattgc aacgaccaga
    20761 tcggtgggat ctttcaccca aaataccggg ccgtgatcca gcgccatgtc gcgaattgtc
    20821 ccgccgccta cagcggtaac cacgcccagc accagaacac caaaagggtc catacgcaat
    20881 tttccggcta acaaaacgcc ggagatggca aataccgctg tgccgactat atccagccaa
    20941 tagacgagca ttgttcaatc cccactgagc acctaaaaag gtcaggcgct aatctacctg
    21001 tgaaagcgca ttacagagct gttgtgcagc gaggataata cgtgggcttg cacgtcaaac
    21061 cagtcactcg tgagaggaat aacgggaatt ttgagctgtt caccccagta ttgtttgatt
    21121 ttaggaattt ggtccggtcc gcctgtaatg acaatcgcct gtggcgagcg tgctaacacc
    21181 tgttcgcggc taacttgcgg ccaaggaacc cggctgtctt taaagatgtt ttctccgcca
    21241 caaacttcga gtacctggtt ttgaatcgac tcttttccac tggtaaatgg cggattaatg
    21301 ccgaattgca gaaaaacacg ttttttaggt ttaccagcat attgcgcttt caattgcgcg
    21361 tactgatcca gcagggattg cgcggcttgt tcggccttat ccggttgcgg actccagggg
    21421 gccagttgac gtaacgcatt ggcaatttgt tcaatgcttg tcgcatcgac ccacatcact
    21481 tttattccca gcgaagccag ctggtcaacc tgccgctcgg cattacctcc acgccaggca
    21541 atcaccagat cgggtttcag cgcgacaatg cgttccagat tcatcccctg ccaggtggaa
    21601 acctgctcaa tcttttgcgc ttgtggagga tagtcggaat agctgctgac cccaaccggc
    21661 gtgatcccgg cggcaaaggc aagttcagtg ttggcgggag aaagcgtgat gacgcgcggt
    21721 gccgcgttga gccacagtgg cgcgagaaaa gacagggcga ccagcgccct gaacagtgac
    21781 ttagccatgt gccagtttct gcaccagtga ctcaaccatc aggctggact gtttagcggc
    21841 aacagccagg aactcatcga agctaagatg agactgttga tcggccacgt cggagatggc
    21901 gcgtacgaca acaaacggga cgttgaaatt gtggcagaca tgggcgattg ccgtcgcttc
    21961 catctctaca gcaatggcct gtgggaagtt gtggcggatt ttcgccagac caacagaacc
    22021 gttgatgaaa gcgtcgccgc taacaatcag gccacgtaca gcgttaagat tcagttcggc
    22081 aatgcaggcc tcagcggcag cgatcagttt atcgtcagct ttaaagcctg ccggacagcc
    22141 tggtaactga ccgtattcat aaccaaatgc cgtgacatcc gcgtcgtgat aacgtgcttc
    22201 gtccgagaca acgatatcgc ccactttcaa cgttggtgcc aggccaccgg cagaaccggt
    22261 gttaataatc acatctggct tgcagtgttc caacagcaaa gtggcaccca gcgccgcagc
    22321 gactttaccg atgcccgatt tcagaagcgc aacctcggtt ccattcagtt ggccggtata
    22381 gatttcgcaa ccgccgagac tgatagtttg acgattttcg attttgtcac gcagcagcgt
    22441 aacttcttct tccattgcac caatgatgcc gattttcata gatttactcg cgataagccc
    22501 gatttgaagg catagtttac catgcgctta cggggaagcg tatttctcac gcgggagagg
    22561 acatggcaca gattgatttc cgaaaaaaaa taaactggca tcgtcgttac cgttcaccgc
    22621 agggcgttaa aaccgaacat gagatcctgc ggatcttcga gagcgatcgc gggcgtatca
    22681 tcaactctcc ggcaattcgt cgtctgcaac aaaagaccca ggtttttcca ctggagcgca
    22741 atgccgccgt gcgcacgcgt cttacccact cgatggaagt ccagcaggtg gggcgctaca
    22801 tcgccaaaga aattctaagc cgtatgaaag agcttaaatt actggaagca tacggcctgg
    22861 atgaactgac cggccccttt gaaagcattg ttgagatgtc atgcctgatg cacgatatcg
    22921 gcaatccgcc gtttggtcat tttggcgaag cggcgataaa tgattggttt cgccagcgtt
    22981 tgcacccgga agatgccgaa agccagcctc tgactgacga tcgctgcagc gtggcggcac
    23041 tacgtttacg ggacggggaa gaaccgctta acgagctgcg gcgcaagatt cgtcaggact
    23101 tatgtcattt tgaggggaat gcacaaggca ttcgtctggt gcatacattg atgaggatga
    23161 atctcacctg ggcacaggtt ggcggtattt taaaatatac ccgtccggcg tggtggcgtg
    23221 gcgaaacgcc tgagacacat cactatttaa tgaaaaagcc gggttattat ctttctgaag
    23281 aagcctatat tgcccggttg cgtaaagaac ttaatttggc gctttacagt cgttttccat
    23341 taacgtggat tatggaagca gccgacgaca tctcctattg tgtggcagac cttgaagatg
    23401 cggtagagaa aagaatattt accgttgagc agctttatca tcatttgcac gaagcgtggg
    23461 gccagcatga gaaaggttcg ctcttttcgc tggtggttga aaatgcctgg gaaaaatcac
    23521 gctcaaatag tttaagccgc agtacggaag atcagttttt tatgtattta cgggtaaaca
    23581 ccctaaataa actggtaccc tatgcggcac aacgatttat tgataatctg cctgcgattt
    23641 tcgccggaac gtttaatcat gcattattgg aagatgccag cgaatgcagc gatcttctta
    23701 agctatataa aaatgtcgct gtaaaacatg tgtttagcca tccagatgtc gagcagcttg
    23761 aattgcaggg ctatcgggtc attagcggat tattagagat ttatcgtcct ttattaagcc
    23821 tgtcgttatc cgactttact gaactggtag aaaaagaacg ggtgaaacgt ttccctattg
    23881 aatcgcgctt attccacaaa ctctcgacgc gccatcggct ggcctatgtc gaggctgtca
    23941 gtaaattacc gtcagattat cctgagtttc cgctatggga atattattac cgttgccgcc
    24001 tgctgcagga ttatatcagc ggtatgaccg acctctatgc gtgggatgaa taccgacgtc
    24061 tgatggccgt agaacaataa ccaggctttt gtaaagacga acaataaatt tttacctttt
    24121 gcagaaactt tagttcggaa cttcgcgcta taaaacgaat ctgaagaaca cagcaatttt
    24181 gcgttatctg ttaatcgaga ctgaaataca tgaaaaaaac cacattagca ctgagtgcac
    24241 tggctctgag tttaggtttg gcgttatctc cgctctctgc aacggcggct gagacttctt
    24301 cagcaacgac agcccagcag atgccaagcc ttgcaccgat gctcgaaaag gtgatgcctt
    24361 cagtggtcag cattaacgta gaaggtagca caaccgttaa tacgccgcgt atgccgcgta
    24421 atttccagca gttcttcggt gatgattctc cgttctgcca ggaaggttct ccgttccaga
    24481 gctctccgtt ctgccagggt ggccagggcg gtaatggtgg cggccagcaa cagaaattca
    24541 tggcgctggg ttccggcgtc atcattgatg ccgataaagg ctatgtcgtc accaacaacc
    24601 acgttgttga taacgcgacg gtgattaaag tccagctgag cgatggccgt aagttcgacg
    24661 cgaagatggt cggcaaagat ccgcgctctg atatcgcgct gatccaaatc cagaacccga
    24721 aaaacctgac cgcaattaag atggcggatt ctgatgcact gcgcgtgggt gattacaccg
    24781 tagcgattgg taacccgttt ggtctgggcg agacggtaac ttccgggatt gtctctgcgc
    24841 tggggcgtag cggcctgaat gctgaaaact acgaaaactt catccagacc gatgcagcga
    24901 tcaaccgtgg taactccggt ggtgcgctgg ttaacctgaa cggcgaactg atcggtatca
    24961 acaccgcgat cctcgcaccg gacggcggca acatcggtat cggttttgca atcccgagca
    25021 acatggtgaa aaacctgacc tcgcagatgg tggaatacgg ccaggtgaaa cgcggtgagc
    25081 tgggtattat ggggactgag ctgaactccg aactggcgaa agcgatgaaa gttgacgccc
    25141 agcgcggtgc tttcgtaagc caggttctgc ctaattcctc cgctgcaaaa gcgggcatta
    25201 aagcgggtga tgtgatcacc tcactgaacg gtaagccgat cagcagcttt gccgcactgc
    25261 gtgctcaggt gggtactatg ccggtgggca gcaaactgac cctgggctta ctgcgcgacg
    25321 gtaagcaggt taacgtgaac ctggaactgc agcagagcag ccagaatcag gttgattcca
    25381 gctccatctt caacggcatt gaaggcgctg agatgagcaa caaaggcaaa gatcagggcg
    25441 tggtagtgaa caacgtgaaa acgggcactc cggctgcgca gatcggcctg aagaaaggtg
    25501 atgtgattat tggcgcgaac cagcaggcag tgaaaaacat cgctgaactg cgtaaagttc
    25561 tcgacagcaa accgtctgtg ctggcactga acattcagcg cggcgacagc accatctacc
    25621 tgttaatgca gtaatctcac tcaacccctt cctgaaaacg ggaaggggtt ctccttacaa
    25681 tctgtgaact tcaccacaac tccatacatc ttcatcatcc tttaggcatt tgcacaatgc
    25741 cgtacgttac gtacttcctt atgctaagcc gtgcataacg gaggacttat ggctggcatc
    25801 ttgataccaa aatggcgcag gatatcgtgg cacgtaccat gcgcatcatc gataccaata
    25861 tcaacgtaat ggatgcccgt gggcgaatta tcggcagcgg cgatcgtgag cgtattggtg
    25921 aattgcacga aggtgcattg ctggtacttt cacagggacg agtcgtcgat atcgatgacg
    25981 cggtggcacg tcatctgcac ggtgtgcggc aagggattaa tctaccgtta cggctggaag
    26041 gtgaaattgt cggcgtaatt ggcctgacag gtgaaccaga gaatctgcgt aaatatggcg
    26101 aactggtctg catgacggct gaaatgatgc tggaacagtc gcggttgatg cacttgttgg
    26161 cgcaggatag ccgtttgcgg gaggaactgg tgatgaacct gattcaggca gaggagaata
    26221 ctcccgcact tactgaatgg gcgcaacggc tggggatcga tctcaatcaa ccgcgagtgg
    26281 tggctattgt tgaggtcgac agcggtcagc ttggtgtgga cagcgcaatg gcggagttac
    26341 aacaactgca aaacgcgctg actacgcccg agcgtaataa tctggtggcg attgtctcgc
    26401 taaccgaaat ggtggtgttg aaaccggcgt tgaactcttt tgggcgctgg gatgcagaag
    26461 atcatcgtaa gcgagttgaa caactgatta cccgcatgaa agagtacggc cagctgcgtt
    26521 ttcgcgtttc actgggcaac tattttaccg gtcctggcag tattgcccga tcctatcgta
    26581 cggcgaaaac gacgatggtg gtgggtaaac agcggatgcc agaaagtcgc tgctattttt
    26641 atcaggatct gatgttacct gtgttactcg acagtttgcg tggcgactgg caggccaacg
    26701 aactggcgcg accgctggcg cggctgaaag cgatggacaa taacggcttg ctgcgacgaa
    26761 cgctggcggc gtggtttcgt cacaatgtgc aaccgctggc aacgtcaaag gcgttgttta
    26821 ttcatcgtaa taccctggag tatcggctta attgtatatc ggaactgacc gggcttgatt
    26881 tgggcaattt tgatgacagg ttgctgctgt atgtggcgtt acaactggat gaagagcggt
    26941 aggttatgcg ttaaggttga ggcggcgctg tctcattccc ctcagcccga aggggagagg
    27001 ggaatgcccg aattaaccgt caattcggga ttatttacgc gttagttttt ccagatcggc
    27061 ttcaatctcg ctgatcttat tggttacgac tgactccagg tgacgtaagt cgtcgaggat
    27121 cttacgctta agatcaactt cgctgcggtc acgctggcag atttgatcaa gctcatcaat
    27181 gatataccgt agattcgggc tgatttcctg gacttcttta taaccctgac ccacaccatc
    27241 agcgacgacc gttttacgct gacgcggata tttaaactta acgctcttgg cgaaaaactc
    27301 gcctttgtct ttctggaaat agattttcag aatatcgttg ttggcttcct gccggaggct
    27361 gtaacgatca atttcttcag gattggtaat acccagactt ttcagattgt cgtacatagc
    27421 gttacctcaa aatgagtcag taaattgtgc ttattttagc atttggcctg gcccgcccgg
    27481 ctcgactgtg atcgcagaaa gcctttttct tccagacttc tatcatggcg taaaaatcaa
    27541 aaaattacct gctttattgt ggtgataaaa ttcacgttct acaccagttc cagcatcgtt
    27601 acttccgggc ggcagttcag acgcaaacca tacaaactgc ccacgccacg ggttgtgtag
    27661 atgtgtcgtt cgccaaaggc atttaatccg gcgacgtaac gtttatcttc gacaggggca
    27721 aaaggttcac caaccaacgg tacgcgcagt tgcccgccgt gagtatggcc gcacagcatc
    27781 agatcccagg gttcatcacg catgacttct ttgctgtcgg gattatgtgc cagcatcagt
    27841 cttggcagat ttgcttcgct ggcgggaggt ggtttgcatt gtccggccca taagtcaccg
    27901 gtgcctacca gttcgaattg cctgttcggc gtggcgatca ccgtagcctg gttaaacaac
    27961 accgtgatgc ccactgattt caacgtctcg ccaattaagt gatttttttc tgtaccaaca
    28021 gggcgatcgt ggttgccgaa gcaggcaaac gtcggcgcac attcggcaag gggggagagg
    28081 acatcactaa acgccgaaaa attcagcggc atatcaaata atacgtaatc gccgcccagt
    28141 aatatcaaat cgggcttttg ttctatgcca agagcaatcg cgtcagaaat caggcttaaa
    28201 ggaacaaaac gagagtaatg gagatcggcc agaaaaagaa ttttgaatgg tgctgcgttg
    28261 tctttaaaaa aggcgaggcg gtgacggatt aattcaaacc agcctggctc ccagtaatgc
    28321 atataaccga aacctgagct cgtggctatc gtcgcggcag tagcctgcaa caatcggcgg
    28381 cgtgaaatca tcgctcatcc ctgcaaaaaa aatcgggcag cgtcgtgctg cccgtgtgca
    28441 tacttttagt cgatggtacg cagcagttcg ttaatgccga ctttgccgcg agttttcgcg
    28501 tcaactttct taacgataac cgcacagtag aggctgtatt tgccatcttt tgacggcaga
    28561 ttacctgaaa caaccacaga ccccgccgga acgcgaccgt agtggatttc gccggtttca
    28621 cggtcgtaaa tacgggtgct ctgaccaatg tatacgccca tggaaatgac ggaaccttct
    28681 tcgacaatca ccccttcaac tacttcagag cgtgcgccaa tgaagcagtt atcttcaatg
    28741 atggttgggt tagcctgcag cggttccagc acgccgccga tgcccacgcc accggaaagg
    28801 tggacgtttt taccaatctg cgcacaagaa ccgacggtcg cccaggtatc aaccatggtg
    28861 ccttcatcaa catatgcgcc gatgttgacg taagacggca tcagcacggt gttacgggca
    28921 ataaacgcac cctgacgtac cgccgctggt ggcacaacgc ggaagccttc tttctggaaa
    28981 cgtgcttcgt cgtagtcggc gaatttcatc ggcactttgt cgaagtagcg gctttctgcc
    29041 ccttcgatca cctgattatc attaatacgg aaagagagca gcaccgcttt tttcaaccac
    29101 tgatgcgtca cccactgacc gtcaattttt tccgctacac gcagtgcacc ggaatccagc
    29161 agggagatca cctgatttac cgcttcgcgg gtaacggtgt ctgcgttggc tggcgtgatc
    29221 tcggcacggc gttcaaaagc ggtttcaata atgttctgta actgctgcat tgttaaactc
    29281 ttttcatatc agtaaacaca tcacccttta tcgtttggat tgagggcctc tgtcaaccgc
    29341 tgatgcactt cctgctgcaa ctcgttatta agcgcacgcc ggtcagcggt ggcaattatg
    29401 aataaatctt ctactcgctc gccaatggtt gtaattcggg caccatgaag cgaaattccc
    29461 agatcggcaa aaattttccc gactctcgcc agcagtcctg gctggtcgag cgcgataagc
    29521 tcaaggaacg atttgcggtc ggtatgggtc ggcaaaaacg ttacttcggt ttcaacagta
    29581 aaatggcgta atttggcggg ttggcgacgg ggctgcggtg gctgccagct actttgcgtc
    29641 agtacttgct ccagaccaaa ccgaataacc tcatgacgat ctgcggacag cgggctgcca
    29701 tcgggttcca gcacgataaa ggtatccatc gccataccgt cgcgagtggt gaaaatttgt
    29761 gcgtcgtgaa cacttaaatt gcggcggtct aattcggcac agacggcggc aaacagatag
    29821 gggcggtccg ggctccagat aaaaatctcg gtgcctccac gcgtagcctg cgggctaagc
    29881 aataccagtg gtttgcttaa atcatgctgt aataaatggc gggcatgcca ggccagttga
    29941 tttgggctat ggcggacaaa atagttagca cgacagcgtg accaaatttg gtgcagcgcc
    30001 tcttcgtcga tgttatccat gcgcagtagt gccagtgcct ggagttggtg atggcgaacc
    30061 cgttcgcgca tatccggcgt gttttgcatt ccgcgtcgta gctgcttttc ggtggcaaaa
    30121 tagagttcgc gcaacagact ttgcttccag ctattccaca gcgtttcgtt ggtggcgcaa
    30181 atgtcagcca ctgtcaggca taccagatag cgcagacgat tttccgtttg aacttcttcg
    30241 gcaaactgct tgatgacttc agggtcctga atatcgcggc gttgtgctgt caccgacatc
    30301 agcaagtgct ggcgaaccag ccaggcaacc agctgtgttt cgcgtgagtt cagcccgtgg
    30361 agttctgcaa aatgcactac atcctgagca ccgagaatgg agtggtcgcc gccgcgtcct
    30421 ttggcgatat cgtgaaacag cgcggcgatg aaaatcagct cagttgacgg caggcgcggc
    30481 cagacgtcca cacacaacgg atggcgctgg cgcgtttctt cactggcaaa actctccagt
    30541 ttcagcatca cgcggatagt atgttcatcc accgtgtagg cgtggaacag atcaaactgc
    30601 atctgcccga cgatatgcga ccattgcggc atatacgcgc cgagcacgct atggcgatgc
    30661 attggcaata gcccgcgccg caccgctccg gggtgacgca gaatgctcaa aaacagtttt
    30721 cgtgcttccg gaatattaca cagcggttgt tgcagatggc gacgggcatg gcgtaactgg
    30781 cgcagcgtgg tggagtaaat gccggtgatc gcactgttgc gcaccatggt gtagaacata
    30841 cgcaagatgg cttccggctg gcgcataaat agtgtttcat cacgcaggtc gattagcgta
    30901 ccgcgtagct gaaactcatc gtcgattgga cgtggttttt cgtcggcagg aagggcgagg
    30961 atggcttcat cgaacagttg cagcagcatc tggttgagtt cactgacgcg gcgtgtaacg
    31021 cggaagtaat ccttcatcat ccgctcgacc ggttcgttgc cttcaccact gtaattcaga
    31081 cgctgagcga cgctaagttg gcgatcgaat aacaggcgat tatcgtaacg gctgacgacc
    31141 agatgcaggg caaagcgaat acgccacagt atatgcagac attcgtttaa ttccgcccgc
    31201 tccgctgagg ttaagaagcc aaacccaacc atttcatcca gcgatgttgc gccaaaatga
    31261 cggcgggcca cccattgcag agtgtggata tcgcgcaagc cgccagggct acttttgatg
    31321 tctggttcaa gattgtagct ggtgccgtgg taacgctgat ggcgctggtt ctgttcttca
    31381 actttcgccg cgtagaactt gtcggaaggc cagaatcctt cgctaaaaat atgtttttgc
    31441 agttcgagga agagcgcaac atcgccaatt aataagcggg attcgattaa attggtggcg
    31501 acggttaaat ccgataaccc ttccagcatg cactcttcaa gcgtgcgcac actatgaccg
    31561 acttccagct ttacatccca gagcagcgtt aacagctcgc ccactttttg cgcctgatcg
    31621 tccgggagct ttttacggct taaaatcagt aaatcgatgt cagaaagtgg atgcagctcg
    31681 ccacgaccgt agccaccgac ggcgaccaat gccaggtcgg caatctggct gaatcccgct
    31741 tcaatccata atcgttgcag gagctggtcg ataaactcgg tgcgcgcctc aatcaactgt
    31801 tctgcagaga tcccattgtc aaaggcatca cccagccaac gctggaaagt atctatatgg
    31861 gcttttatcc caccgacggt taattcatca cggggccaga cgcatggatt ttgcggttga
    31921 ccgggcaggg tggggagagc ggtgtttgcg tactgttctg gaagggtatt cattgtgcgc
    31981 cactcataag attaaattat cgcattaaaa aagccggcat tcgccggctt catcttattc
    32041 gtcgtgcgag attatcgccg ggatggtgtc atccttgcgt agcgtcagaa tttcgcagcc
    32101 gttatcagtc accacaatag tatgctcata ttgtgcagac aagctgcgat ctttggtttt
    32161 taccgtccag ccatctttca tggtgcggat ctctttttta cccgcgttga ccattggctc
    32221 gatggtgaac gtcatcccag gtttcagtac gacgttggtt tcacgggagt catagtgcag
    32281 cacctgcggt tcttcatgga agccgcgacc aataccgtgt ccgcaatatt cacgaacgac
    32341 ggagaagcct tctgcttcga caaacttctg aatcgccgca ccgatttcgc gcaggttaat
    32401 gcctggtttg accatgcgca gcgccaggta caggctttct tgcgtgatgc ggcacagacg
    32461 ttcgcccatg atggtcggct taccgacgat aaacattttc gaggtatcgc cgtggaaacc
    32521 atctttgatt acggtgacat caatgttaac gatatcgcca tctttcagca gcttcgcatc
    32581 gtccgggata ccgtggcaca ccacttcatt aatagagatg caaacggatt tcggatagcc
    32641 gtgatagccg aggcaggcag aaaccgcgtg ttgttcatta acaatgtaat cattacagat
    32701 gcgatccagc tcgccggtgc tgacgcccgg tttaacatac ggttcgatca tctccagcac
    32761 ttcggcagcc agtcggccag cgacgcgcat tttttcgata tcttctgggg tcttgattga
    32821 gatagccatt aattctgtcc atcagcgtcg gtgataccga caatatatat gtaagtgccg
    32881 tcaatggtat cacacccggg caaattgaga atcattctga atttcgccaa acgtgccact
    32941 gaacgttttc tataatagaa aattcaacgt ctgatgctgt acacagcgcc aacaattatt
    33001 ggtgtccatg acgtatttgt ggtataaagc gcgccggact tccgatccat ttcgtataca
    33061 cagactggac ggaagcgaca atctcacttt gtgtaacaac acacacgtat cggcacatat
    33121 tccggggtgc cctttggggt cggtaatatg ggatacgtgg aggcataacc ccaactttta
    33181 tatagaggtt ttaatcatgg caactgtttc catgcgcgac atgctcaagg ctggtgttca
    33241 cttcggtcac cagacccgtt actggaaccc gaaaatgaag ccgttcatct tcggtgcgcg
    33301 taacaaagtt cacatcatca accttgagaa aactgtaccg atgttcaacg aagctctggc
    33361 tgaactgaac aagattgctt ctcgcaaagg taaaatcctt ttcgttggta ctaaacgcgc
    33421 tgcaagcgaa gcggtgaaag acgctgctct gagctgcgac cagttcttcg tgaaccatcg
    33481 ctggctgggc ggtatgctga ctaactggaa aaccgttcgt cagtccatca aacgtctgaa
    33541 agacctagaa actcagtctc aggacggtac tttcgaaaag ctgaccaaga aagaagcgct
    33601 gatgcgcact cgtgagctgg agaaactgga aaacagcctg ggcggtatca aagacatggg
    33661 cggtctgccg gacgctctgt ttgtaatcga tgctgaccac gaacacattg ctatcaaaga
    33721 agcaaacaac ctgggtattc cggtatttgc tatcgttgat accaactctg atccggacgg
    33781 tgttgacttc gttatcccgg gtaacgacga cgcaatccgt gctgtgaccc tgtacctggg
    33841 cgctgttgct gcaaccgtac gtgaaggccg ttctcaggat ctggcttccc aggcggaaga
    33901 aagcttcgta gaagctgagt aataaggctt gataactccc ccaaaatagt tcgagttgca
    33961 gaaaggcggc aagctcgaga attcccggga gcttacatca gtaagtgacc gggatgagcg
    34021 agcgaagata acgcatctgc ggcgcgaaat atgaaggggg agagccctta tagaccaggt
    34081 agtacacgtt tggttagggg gcctgcatat ggcccccttt ttcactttta tatctgtgcg
    34141 gtttaatgcc gggcagatca catctccgag gattttagaa tggctgaaat taccgcatcc
    34201 ctggtaaaag agctgcgtga gcgtactggc gcaggcatga tggattgcaa aaaagcactg
    34261 actgaagcta acggcgacat cgagctggca atcgaaaaca tgcgtaagtc cggtgctatt
    34321 aaagcagcga aaaaagcagg caacgttgct gctgacggcg tgatcaaaac caaaatcgac
    34381 ggcaactacg gcatcattct ggaagttaac tgccagactg acttcgttgc aaaagacgct
    34441 ggtttccagg cgttcgcaga caaagttctg gacgcagctg ttgctggcaa aatcactgac
    34501 gttgaagttc tgaaagcaca gttcgaagaa gaacgtgttg cgctggtagc gaaaattggt
    34561 gaaaacatca acattcgccg cgttgctgcg ctggaaggcg acgttctggg ttcttatcag
    34621 cacggtgcgc gtatcggcgt tctggttgct gctaaaggcg ctgacgaaga gctggttaaa
    34681 cacatcgcta tgcacgttgc tgcaagcaag ccagaattca tcaaaccaga agacgtatcc
    34741 gctgaagtgg tagaaaaaga ataccaggta cagctggata tcgcgatgca gtctggtaag
    34801 ccgaaagaaa tcgcagagaa aatggttgaa ggccgcatga agaaattcac cggcgaagtt
    34861 tctctgaccg gtcagccgtt cgttatggaa ccaagcaaaa ctgttggtca gctgctgaaa
    34921 gagcataacg ctgaagtgac tggcttcatc cgcttcgaag tgggtgaagg catcgagaaa
    34981 gttgagactg actttgcagc agaagttgct gcgatgtcca agcagtctta attatcaaaa
    35041 aggagccgcc tgagggcggc ttctttttgt gcccatcttg taaattcagc taacccttgt
    35101 ggggctgcgc tgaaaagcga cgtacaatgt cgctagtatt aattcatttc aatcgttgac
    35161 agtctcagga aagaaacatg gctaccaatg caaaacccgt ctataaacgc attctgctta
    35221 agttgagtgg cgaagctctg cagggcactg aaggcttcgg tattgatgca agcatactgg
    35281 atcgtatggc tcaggaaatc aaagaactgg ttgaactggg tattcaggtt ggtgtggtga
    35341 ttggtggggg taacctgttc cgtggcgctg gtctggcgaa agcgggtatg aaccgcgttg
    35401 tgggcgacca catggggatg ctggcgaccg taatgaacgg cctggcaatg cgtgatgcac
    35461 tgcaccgcgc ctatgtgaac gctcgtctga tgtccgctat tccattgaat ggcgtgtgcg
    35521 acagctacag ctgggcagaa gctatcagcc tgttgcgcaa caaccgtgtg gtgatcctct
    35581 ccgccggtac aggtaacccg ttctttacca ccgactcagc agcttgcctg cgtggtatcg
    35641 aaattgaagc cgatgtggtg ctgaaagcaa ccaaagttga cggcgtgttt accgctgatc
    35701 cgacgaaaga tccaaccgca accatgtacg agcaactgac ttacagcgaa gtgctggaaa
    35761 aagagctgaa agtcatggac ctggcggcct tcacgctggc tcgtgaccat aaattaccga
    35821 ttcgtgtttt caatatgaac aaaccgggtg cgctgcgccg tgtggtaatg ggtgaaaaag
    35881 aagggacttt aatcacggaa taattcccgt gatggataaa taagggtaag attccgcgta
    35941 agtatcgcgg gggcgtaagt ctggttataa ggcgttattg ttgcaggcag tttggtcacg
    36001 gccagcgcgc agcaaccgga gcgtacaaaa gtacgtgagg atggcgagca ctgctcgggg
    36061 ccaaaatggc aaataaaata gcctaataat ccagacgatt acccgtaata tgtttaatca
    36121 gggctatact tagcacactt ccactgtgtg tgactgtctg gtctgactga gacaagtttt
    36181 caaggattcg taacgtgatt agcgatatca gaaaagatgc tgaagtacgc atggacaaat
    36241 gcgtagaagc gttcaaaacc caaatcagca aaatacgcac gggtcgtgct tctcccagcc
    36301 tgctggatgg cattgtcgtg gaatattacg gcacgccgac gccgctgcgt cagctggcaa
    36361 gcgtaacggt agaagattcc cgtactctga aaatcaacgt gtttgatcgt tcaatgtctc
    36421 cggccgttga aaaagcgatt atggcgtccg atcttggcct gaacccgaac tctgcgggta
    36481 gcgacatccg tgttccgctg ccgccgctga cggaagaacg tcgtaaagat ctgaccaaaa
    36541 tcgttcgtgg tgaagcagaa caagcgcgtg ttgcagtacg taacgtgcgt cgtgacgcga
    36601 acgacaaagt gaaagcactg ttgaaagata aagagatcag cgaagacgac gatcgccgtt
    36661 ctcaggacga tgtacagaaa ctgactgatg ctgcaatcaa gaaaattgaa gcggcgctgg
    36721 cagacaaaga agcagaactg atgcagttct gatttcttga acgacaaaaa cgccgctcag
    36781 tagatccttg cggatcggct ggcggcgttt tgctttttat tctgtctcaa ctctggatgt
    36841 ttcatgaagc aactcaccat tctgggctcg accggctcga ttggttgcag cacgctggac
    36901 gtggtgcgcc ataatcccga acacttccgc gtagttgcgc tggtggcagg caaaaatgtc
    36961 actcgcatgg tagaacagtg cctggaattc tctccccgct atgccgtaat ggacgatgaa
    37021 gcgagtgcga aacttcttaa aacgatgcta cagcaacagg gtagccgcac cgaagtctta
    37081 agcgggcaac aagccgcttg cgatatggca gcgcttgagg atgttgatca ggtgatggca
    37141 gccattgttg gcgctgctgg gctgttacct acgcttgctg cgatccgcgc gggtaaaacc
    37201 attttgctgg ccaataaaga atcactggtt acctgcggac gtctgtttat ggacgccgta
    37261 aagcagagca aagcgcaatt gttaccggtc gatagcgaac ataacgccat ttttcagagt
    37321 ttaccgcaac ctatccagca taatctggga tacgctgacc ttgagcaaaa tggcgtggtg
    37381 tccattttac ttaccgggtc tggtggccct ttccgtgaga cgccattgcg cgatttggca
    37441 acaatgacgc cggatcaagc ctgccgtcat ccgaactggt cgatggggcg taaaatttct
    37501 gtcgattcgg ctaccatgat gaacaaaggt ctggaataca ttgaagcgcg ttggctgttt
    37561 aacgccagcg ccagccagat ggaagtgctg attcacccgc agtcagtgat tcactcaatg
    37621 gtgcgctatc aggacggcag tgttctggcg cagctggggg aaccggatat gcgtacgcca
    37681 attgcccaca ccatggcatg gccgaatcgc gtgaactctg gcgtgaagcc gctcgatttt
    37741 tgcaaactaa gtgcgttgac atttgccgca ccggattatg atcgttatcc atgcctgaaa
    37801 ctggcgatgg aggcgttcga acaaggtcag gcagcgacga cagcattgaa tgccgcaaac
    37861 gaaatcaccg ttgctgcttt tcttgcgcaa caaatccgct ttacggatat cgctgcgttg
    37921 aatttatcgg tactggaaaa aatggatatg cgcgaaccac aatgtgtgga cgatgtgtta
    37981 tctgttgatg cgaacgcgcg tgaagtcgcc agaaaagagg tgatgcgtct cgcaagctga
    38041 ggataatccg gctacagaga gtctcgctat ttgttagcgt agggcttcag tgatatagtc
    38101 tgcgccatct gatcgtaagt agttggcttt ataaggtcag gtatgccgtg gttttgcacg
    38161 gctttttttt gtataggctt cagtattcct gagtaccgta aaccctgtca gggaataaaa
    38221 aacgcgtgat gttgtctgct actcaaccac ttagcgaaaa attgccagcg catggctgcc
    38281 gtcatgttgc gatcattatg gacggcaatg gtcgctgggc aaaaaagcaa gggaagattc
    38341 gtgcctttgg gcataaagcc ggggcaaaat ccgtccgccg ggctgtctct tttgcggcca
    38401 acaacggtat tgaggcgtta acgctgtatg cctttagtag tgaaaactgg aaccgaccag
    38461 cgcaggaagt cagtgcgtta atggaactgt ttgtgtgggc gctcgatagc gaagtaaaaa
    38521 gtctgcaccg acataacgtg cgtctgcgta ttattggcga taccagtcgc tttaactcgc
    38581 gtttgcaaga atgtattcgt aaatctgaag cgctaacagc cgggaatacc ggtctgacgc
    38641 tgaatattgc ggcgaactac ggtggacgtt gggatatagt ccagggagtc aggcaactgg
    38701 ctgaaaaggt gcagcaagga aacctgcaac cagatcagat agatgaagag atgctaaacc
    38761 agcatgtctg tatgcatgaa ctggcccctg tagatttagt aattaggact gggggggagc
    38821 atcgcattag taactttttg ctttggcaaa ttgcctatgc cgaactttac tttacagatg
    38881 ttctctggcc cgatttcgat gaacaagact ttgaaggggc gttaaatgcc tttgctaatc
    38941 gagagcgtcg tttcggcggc accgagcccg gtgatgaaac agcctgatgg ggggcgcttt
    39001 tgctgaagta tcgcctgata tctgcttttg tgttaatacc cgtcgtcatc gcggcgttgt
    39061 ttctgttgcc gccggtgggg ttcgccattg taacgctggt ggtctgcatg ctggcagcgt
    39121 gggaatgggg acagcttagc ggttttacca ctcgttcgca gcgagtatgg ttggcggtgt
    39181 tatgcgggtt attgttggcg ctgatgcttt ttctgttgcc ggaatatcac cgaaatattc
    39241 atcaaccgct ggttgaaatc tcactttggg cttcgctggg ttggtggatt gtcgcgctat
    39301 tgctggtgct gttttaccca ggttccgcag caatctggcg taactctaaa acattgcgcc
    39361 ttatttttgg cgtgctaacc attgttccct tcttctgggg catgctggcg ttacgggcct
    39421 ggcactatga cgagaatcat tacagtggcg caatatggct gctctatgtc atgatcctgg
    39481 tatggggcgc tgactccggc gcatatatgt ttggcaaatt gtttggtaaa cataagctgg
    39541 caccgaaggt ttctccgggt aaaacctggc aaggctttat aggtggactc gctactgcag
    39601 cggtaatctc atggggttat ggcatgtggg cgaatctcga cgtcgctccc gtcaccttac
    39661 tcatttgctc tattgtcgca gcgttagcct cagtgctcgg cgatctgacc gagagtatgt
    39721 ttaagcgtga agcaggaatt aaggacagcg gtcatttaat tccaggacac ggtggtattt
    39781 tagatcgtat tgatagcctg acggctgcgg taccggtctt tgcttgcttg ttgttactgg
    39841 tattcaggac gctttaacgg aaggtaatat gctgagtttt ctctgggatt tggcttcgtt
    39901 catcgttgca ctgggtgtac ttatcaccgt gcatgaattt ggtcatttct gggttgcccg
    39961 gcgttgtggt gttcgcgttg agcgtttctc aatagggttt ggtaaggcgc tctggcggcg
    40021 aactgataag ctcggcaccg aatatgttat cgccctgatc ccgctgggcg gttatgtcaa
    40081 aatgctggat gagcgcgcag aaccggtcgt tccggaactc cgccaccatg ccttcaataa
    40141 taaatctgtt ggccaacgag cggcgattat tgccgcaggt ccggttgcaa acttcatttt
    40201 tgctatcttt gcctactggc tggtttttat tattggtgtg cctggcgtac gtccggtggt
    40261 tggtgaaatg gcagccaatt cgatagctgc ggaagcacaa attgcaccag gtacggaact
    40321 aaaagccgta gatggtatcg aaacgcctga ttgggatgcc gtgcgtttgc agttggtcga
    40381 taaaattggc gatgaaagca ccaccattac agtagcgcca tttggcagcg accaacggcg
    40441 ggatgtaaag ctcgatttac gtcactgggc gtttgagcct gataaagaag atccggtatc
    40501 ttcgctgggg attcgtcctc gtgggctgca aattgaacct gtactggaaa atgtgcagcc
    40561 aaactcggcg gcaagcaagg caggtttgca agcaggcgac aggatcgtta aagtcgatgg
    40621 tcagccctta acgcagtggg tgacctttgt gatgcttgtc cgggataacc cgggtaaatc
    40681 cttagcgtta gaaatcgaaa ggcagggaag tcccttgtct ttgacattaa tcccggagag
    40741 taaaccgggt aatggtaaag cgattggttt tgtcggtatt gagccgaaag tcattccttt
    40801 gccagatgag tataaagttg tacgccagta tgggccgttc aacgccatcg tcgaagccac
    40861 ggacaaaacg tggcagctga tgaagctgac ggtcagtatg ctgggaaaat tgatcaccgg
    40921 tgatgtgaaa ctgaacaacc tcagtgggcc gatctctatc gccaaggggg ctgggatgac
    40981 agcggaactc ggggtagttt attacctgcc gtttcttgcg cttattagcg tgaacttagg
    41041 gataattaac ctgtttccgt tgcccgtact tgacggggcg catctgctgt tccttgcgat
    41101 cgaaaagatc aagggcggac cggtatccga gcgggttcaa gacttttgtt atcgcattgg
    41161 ctcgattctg ctggtgctgt taatggggct tgcacttttc aatgatttct ctcggttatg
    41221 agagttagtt aggaagaacg cataataacg atggcgatga aaaagttgct catagcgtcg
    41281 ctgctgttta gcagcgccac cgtatacggt gctgaagggt tcgtagtgaa agatattcat
    41341 ttcgaaggcc ttcagcgtgt cgctgttggt gcggccctcc tcagtatgcc ggtgcgtaca
    41401 ggcgacacgg ttaatgatga agatatcagt aataccattc gcgctctgtt tgctaccggc
    41461 aactttgagg atgttcgcgt ccttcgtgat ggtgataccc ttctggttca ggtaaaagaa
    41521 cgtccgacca ttgccagcat tactttctcc ggtaacaaat cggtgaaaga tgacatgctg
    41581 aagcaaaacc tcgaggcttc tggtgtgcgt gtgggcgaat ccctcgatcg caccaccatt
    41641 gccgatatcg agaaaggtct ggaagacttc tactacagcg tcggtaaata tagcgccagc
    41701 gtaaaagctg tcgtgacccc gctgccgcgc aaccgtgttg acctaaaact ggtgttccag
    41761 gaaggtgtgt cagctgaaat ccagcaaatt aacattgttg gtaaccatgc tttcaccacc
    41821 gacgaactga tctctcattt ccaactgcgt gacgaagtgc cgtggtggaa cgtggtaggc
    41881 gatcgtaaat accagaaaca gaaactggcg ggcgaccttg aaaccctgcg cagctactat
    41941 ctggatcgcg gttatgcccg tttcaacatc gactctaccc aggtcagtct gacgccagat
    42001 aaaaaaggta tttacgtcac ggtgaacatt accgaaggcg atcagtacaa gctttctggc
    42061 gttgaagtga gcggcaacct tgccgggcac tccgctgaaa ttgagcagct gactaagatc
    42121 gagccgggcg agctgtataa cggcaccaaa gtgaccaaga tggaagatga catcaaaaag
    42181 cttctcggtc gctatggtta tgcctatccg cgcgtacagt cgatgcctga aattaacgat
    42241 gccgacaaaa ccgttaaatt acgcgtgaac gttgatgcgg gtaaccgttt ctacgtgcgt
    42301 aagatccgtt ttgaaggtaa cgatacctcg aaagatgccg tcctgcgtcg cgaaatgcgt
    42361 cagatggaag gtgcatggct gggaagcgat ctggtcgatc agggtaagga gcgtctgaat
    42421 cgtctgggct tctttgaaac tgtcgatacc gatacccaac gtgttccggg tagcccggac
    42481 caagtagatg tagtctacaa ggtgaaagaa cgtaacaccg gtagcttcaa cttcgggatt
    42541 ggttacggta ctgaaagtgg cgtgagcttc caggctggcg tgcaacagga taactggtta
    42601 ggtacaggtt atgctgttgg tatcaacggg accaaaaacg attaccagac ctatgctgaa
    42661 ttgtcggtaa ccaacccgta cttcactgta gatggtgtaa gcctcggtgg tcgtctcttc
    42721 tataatgact tccaggcaga tgacgccgac ctgtccgact ataccaacaa gagttatggt
    42781 acagacgtga cgttgggctt cccgatcaac gaatataact cgctgcgtgc aggtctgggt
    42841 tatgtacata actccctgtc caacatgcag cctcaggttg cgatgtggcg ttatctgtac
    42901 tctatgggtg aacatccgag cacctctgat caggataaca gcttcaaaac ggacgacttc
    42961 acgttcaact atggttggac ctataacaag cttgaccgtg gttacttccc gacagatggt
    43021 tcacgtgtca acctgaccgg taaagtgacc attcctggat cggataacga atactacaaa
    43081 gtgacgttag acacggcgac ttatgtgccg atcgatgacg atcacaaatg ggttgttctg
    43141 gggcgtaccc gctggggtta tggtgatggt ttaggcggca aagagatgcc gttctacgag
    43201 aacttctatg ccggtggttc cagcaccgtc cgtggcttcc agtccaatac cattggtccg
    43261 aaagcagttt acttcccgca tcaggccagt aattatgatc cggactatga ttacgaatgt
    43321 gcgactcagg acggcgcgaa agacctgtgt aaatcggatg atgctgtagg cggtaacgcc
    43381 atggcggttg ccagcctcga gttcatcacc ccgacgccgt ttattagcga taagtatgct
    43441 aactcggttc gtacttcctt cttctgggat atgggtaccg tttgggatac aaactgggat
    43501 tccagccaat attctggata tccggactat agtgatccaa gcaatatccg tatgtctgcg
    43561 ggtatcgcat tacaatggat gtccccattg gggccgttgg tgttctccta cgcccagccg
    43621 ttcaaaaagt acgatggaga caaggcagaa cagttccagt ttaacatcgg taaaacctgg
    43681 taagtgttct ccacaaagga atgtagtggt agtgtagcga tgactttagg cgatcaatat
    43741 aagatcgccg ggccacgcaa agaactgcac cctccggtgc aaatgggatg gtaaggagtt
    43801 tattgtgaaa aagtggttat tagcggcagg tctcggttta gcactggcaa cttctgctca
    43861 ggcggctgac aaaattgcaa tcgtcaatat gggcagcctg ttccagcagg tagcgcagaa
    43921 aaccggtgtt tctaacacgc tggaaaatga gttcaaaggc cgtgccagcg aactgcagcg
    43981 tatggaaacc gatctgcagg ctaaaatgaa aaagctgcag tccatgaaag cgggcagcga
    44041 tcgcactaag ctggaaaaag acgtgatggc tcagcgccag acttttgctc agaaagcgca
    44101 ggcttttgag caggatcgcg cacgtcgttc caacgaagaa cgcggcaaac tggttactcg
    44161 tatccagact gctgtgaaat ccgttgccaa cagccaggat atcgatctgg ttgttgatgc
    44221 aaacgccgtt gcttacaaca gcagcgatgt aaaagacatc actgccgacg tactgaaaca
    44281 ggttaaataa gtaatgcctt caattcgact ggctgattta gcgcagcagt tggatgcaga
    44341 actacacggt gatggcgata tcgtcatcac cggcgttgcg tccatgcaat ctgcacaaac
    44401 aggtcacatt acgttcatgg ttaacccaaa ataccgtgag catttaggct tgtgccaggc
    44461 gtccgcggtt gtcatgaccc aggacgatct tcctttcgcg aaaagtgccg cgctggtagt
    44521 gaagaatccc tacctgactt acgcgcgcat ggcgcaaatt ttagatacca cgccgcagcc
    44581 cgcgcagaac attgcaccca gtgcggtgat cgacgcgacg gcgaagctgg ggaacaatgt
    44641 atcgattggc gctaacgcgg tgattgaatc cggcgttgaa ctgggcgata acgtgattat
    44701 cggtgccggt tgcttcgtag gtaaaaacag caaaatcggt gcaggttcgc gtctctgggc
    44761 gaacgtaacc atttaccatg agatccagat cggtcagaat tgcctgatcc agtccggaac
    44821 agtggtaggc gcagacggct ttggttatgc caacgatcgt ggtaactggg ttaagatccc
    44881 acagattggt cgcgtaatta ttggcgatcg cgtggagatc ggtgcctgca ctaccatcga
    44941 tcgcggcgcg ctggatgaca ctgttattgg caatggcgtg atcattgata accagtgcca
    45001 gattgcacat aacgtcgtga ttggcgacaa tacggcggtt gccggtggcg tcattatggc
    45061 gggcagcctg aaaattggtc gttactgcat gatcggcgga gccagcgtaa tcaacgggca
    45121 tatggaaata tgcgacaaag tgacggttac gggcatgggt atggtgatgc gtcccatcac
    45181 tgaaccaggc gtctattcct caggcattcc gctgcaaccc aacaaagtct ggcgcaaaac
    45241 cgctgcactg gtgatgaaca ttgatgacat gagcaagcgt ctgaaatcgc ttgagcgcaa
    45301 ggttaatcaa caagactaac gttccatctt ttgttcgcca aactttacgg cctgtctcat
    45361 tcttacgatt gcggcaggcc gtgttattat tgtcgtttct tatattttga caggaagagt
    45421 atcttgacta ctaacactca tactctgcag attgaagaga ttttagaact tctgccgcac
    45481 cgtttcccgt tcttactggt ggatcgcgtg ctggattttg aagaaggtcg ttttctgcgc
    45541 gcagtaaaaa atgtctctgt caatgagcca ttcttccagg gccatttccc tggaaaaccg
    45601 attttcccgg gtgtgctgat tctggaagca atggcacagg caacaggtat tctggcgttt
    45661 aaaagcgtag gaaaactgga accgggtgag ctgtactact tcgctggtat tgacgaagcg
    45721 cgcttcaagc gcccggtcgt gcctggcgat caaatgatca tggaagtcac tttcgaaaaa
    45781 acgcgccgcg gcctgacccg ttttaaaggg gttgctctgg tcgatggtaa agtagtttgc
    45841 gaagcaacga tgatgtgtgc tcgtagccgg gaggcctgat acgtgattga taaatccgcc
    45901 tttgtgcatc caaccgccat tgtggaagag ggcgcgtcaa ttggcgcgaa cgcacacatt
    45961 ggtccttttt gtatcgttgg accccatgtc ggaattggtg agggtaccgt actgaaatct
    46021 cacgttgtcg tgaatggtca tactaaaatt ggccgcgata atgagattta tcagttcgcc
    46081 tccatcggcg aagttaacca ggatctgaaa tatgctggcg aaccgacccg tgtggaaatc
    46141 ggcgatcgta accgcattcg cgaaagcgtc accattcatc gtggcacagt ccagggcggt
    46201 ggattgacga aggtgggcag cgacaactta ctgatgatca acgcgcacat tgcgcacgat
    46261 tgtacggtag gtaaccgctg tattctcgcc aacaacgcaa cgctggcggg tcacgtatcg
    46321 gttgacgact tcgcgatcat cggcggcatg accgcagtcc atcagttctg catcattggt
    46381 gcgcacgtga tggttggcgg ctgctccggt gtggcgcagg acgtccctcc ttatgtcatt
    46441 gcgcagggta accacgcaac gccgttcggt gtcaatatcg aagggctgaa gcgccgcgga
    46501 ttcagccgtg aggcgattac cgctatccgc aatgcgtata agctgattta tcgtagcggt
    46561 aaaacgctcg atgaagtgaa accggaaatt gctgaactgg cggaaacata tccggaagtg
    46621 aaagccttta ccgatttctt ttcacgctca acgcgcggtc tgattcgtta atgactgaac
    46681 agcgtccatt aacgattgcc ctggtcgccg gagaaacctc cggcgatatc ctgggggccg
    46741 gtttaatccg cgctctgaaa gaacgtgtgc ccaacgcccg ctttgttggt gttgccgggc
    46801 cacgaatgca ggctgaaggc tgcgaagcct ggtacgaaat ggaagaactg gcggtgatgg
    46861 gcattgttga agtgctcggt cgtctgcgtc gcttactgca tattcgtgcc gatctgacaa
    46921 agcgttttgg cgaactgaag ccagatgttt ttgttggtat tgatgcgcct gacttcaata
    46981 ttactcttga aggtaacctc aaaaagcagg gtatcaaaac cattcattac gtcagtccgt
    47041 cagtctgggc gtggcgacag aaacgtgttt tcaaaatagg cagagccacc gatctggtgc
    47101 tcgcatttct gcctttcgaa aaagcgtttt atgacaaata caacgtaccg tgccgcttta
    47161 tcggtcatac catggctgat gccatgccat tagatccaga taaaaatgcc gcccgtgatg
    47221 tgctggggat ccctcacgat gtccactgcc tggcgttgct accggggagc cgtggtgcag
    47281 aagttgaaat gcttagtgcc gatttcctga aaacggccca gcttttgcgc cagacatatc
    47341 cggatctcga aatcgtggtg ccactggtga atgccaaacg ccgcgagcag tttgaacgca
    47401 tcaaagctga agtcgcgcca gacttttcag ttcatttgct ggatgggatg ggccgtgagg
    47461 cgatggtcgc cagcgatgcg gcgctactgg cgtcgggtac ggcagccctg gagtgtatgc
    47521 tggcgaaatg cccgatggtg gtgggatatc gcatgaagcc ttttaccttc tggttggcga
    47581 agcggctggt gaaaactgat tatgtctcgc tgccaaatct gctggcgggc agagagttag
    47641 tcaaagagtt attgcaggaa gagtgtgagc cgcaaaaact ggctgcggcg ctgttaccgc
    47701 tgttggcgaa cgggaaaatc agccacgcga tgcacgatac cttccgtgaa ctgcatcagc
    47761 agatccgctg caatgccgat gagcaggcgg cacaagccgt tctggagtta gcacaatgat
    47821 cgaatttgtt tatccgcaca cgcagctggt tgcgggtgtg gatgaagtcg gacgcgggcc
    47881 gttagttggc gcggtcgtca ccgctgcggt gatccttgac ccggcgcgcc cgattgccgg
    47941 gctgaatgat tccaaaaagc tgagcgaaaa acgccgtctg gcgctctgtg aagagatcaa
    48001 agagaaagcg ttgagctgga gtctgggccg cgcggaaccc cacgaaatcg acgagctgaa
    48061 cattcttcat gcgaccatgc tggcgatgca gcgtgccgtc gctgggctgc atattgcgcc
    48121 ggaatatgtg ttgattgatg gtaaccgctg cccgaaatta ccgatgcctg cgatggctgt
    48181 ggtgaaaggc gatagccgcg taccggaaat cagtgccgcg tctatcctgg cgaaagtgac
    48241 gcgtgacgcc gaaatggcgg cgctggatat tgttttcccg caatatggtt ttgcccaaca
    48301 caaagggtac ccaaccgctt ttcatctgga aaaactggct gaacacggcg cgaccgaaca
    48361 ccatcggcgc agctttgggc ctgtcaaacg cgcactggga cttgcgtcct gattcttgtg
    48421 tcgagattaa gtaaaccgga atctgaagat gtctgaacca cgtttcgtac acctgcgggt
    48481 gcacagcgac tactcgatga tcgatggcct ggccaaaact gcaccgttgg taaaaaaggc
    48541 ggcggcgttg ggtatgccag cactggcgat caccgatttc accaaccttt gtggtctggt
    48601 gaagttctac ggagcgggac atggcgcagg gattaagcct atcgtcgggg cagattttaa
    48661 cgtccagtgc gacctgctgg gtgatgagtt aacccacctg acggtactgg cggcgaacaa
    48721 taccggctat cagaatctga cgttgctgat ctcaaaagcg tatcagcgcg ggtacggtgc
    48781 cgctgggccg atcatcgatc gcgactggct tatcgaatta aatgaagggt tgatccttct
    48841 ttccggcggg cgcatgggcg acgtcggacg cagtcttttg cgtggtaaca gcgcgctggt
    48901 agatgagtgt gtcgcgtttt atgaagaaca cttcccggat cgctattttc tcgagctgat
    48961 ccgcaccggc aggccggatg aagaaagcta tctgcacgcg gcggtggaac tggcggaagc
    49021 gcgcggtttg cccgtcgtgg cgactaacga tgtgcgcttt atcgacagca gcgactttga
    49081 cgcacacgaa atccgcgtcg cgatccacga cggctttacc ctcgacgatc ctaaacgccc
    49141 gcgtaactat tcgccgcagc aatatatgcg tagcgaagag gagatgtgtg agctgtttgc
    49201 cgacatcccc gaagcccttg ccaacaccgt tgagatcgcc aaacgctgta acgtaactgt
    49261 gcgtcttggt gaatacttcc tgccgcagtt cccgaccggg gacatgagca ccgaagatta
    49321 tctggtcaag cgtgcaaaag agggcctgga agagcgtctg gcctttttat tccctgacga
    49381 ggaagaacgt gttaagcgcc gcccggaata tgacgaacgt ctggagactg aacttcaggt
    49441 tatcaaccag atgggcttcc cgggctactt cctcatcgtt atggaattta tccagtggtc
    49501 gaaagataac ggcgtaccgg tagggccagg ccgtggctcc ggtgcgggtt cactggtggc
    49561 ctacgcgctg aaaatcaccg acctcgatcc gctggaattt gacctgctgt tcgaacgttt
    49621 ccttaacccg gaacgtgtct ccatgcctga cttcgacgtt gacttctgta tggagaaacg
    49681 cgatcaggtt atcgagcacg tagcggacat gtacggtcgt gatgcggtat cgcagatcat
    49741 caccttcggt acaatggcgg cgaaagcggt gatccgcgac gtaggccgcg tgctggggca
    49801 tccgtacggc tttgtcgatc gtatctcgaa actgatcccg cccgatccgg ggatgacgct
    49861 ggcgaaagcg tttgaagccg agccgcagct gccggaaatc tacgaagcgg atgaagaagt
    49921 taaggcgctg atcgacatgg cgcgcaaact ggaaggggtc acccgtaacg ccggtaagca
    49981 cgccggtggg gtggttatcg cgccgaccaa aattaccgat tttgcgccgc tttactgcga
    50041 tgaagagggc aaacatccgg tcacccagtt tgataaaagc gacgttgaat acgccggact
    50101 ggtgaagttc gacttccttg gtttgcgtac gctcaccatc atcaactggg cgctggagat
    50161 gatcaacaag cggcgggcga agaatggcga gccgccgctg gatatcgccg cgatcccgct
    50221 ggatgacaag aaaagcttcg acatgctgca acgctcggaa accacggcgg tattccagct
    50281 tgaatcgcgc ggcatgaagg acctgatcaa gcgtctgcaa cctgactgct tcgaagatat
    50341 gatcgcactg gtggcgctgt tccgcccagg tccgttgcaa tcagggatgg tggataactt
    50401 tatcgaccgt aaacatggtc gcgaagaaat ctcctatccg gacgtacagt ggcagcatga
    50461 aagcctgaaa ccggtactgg agccaaccta cggcatcatc ctgtatcagg aacaggtcat
    50521 gcagattgcg caggtgcttt ctggttatac cctcggtggc gcggatatgc tgcgtcgtgc
    50581 gatgggtaag aaaaagccgg aagagatggc taagcagcgt tctgtatttg ctgaaggtgc
    50641 agaaaagaac ggaatcaacg ccgaactggc gatgaaaatc ttcgacctgg tggagaaatt
    50701 cgcgggttac ggatttaaca aatcgcactc tgcggcctat gctttggtgt catatcaaac
    50761 gttatggctg aaagcgcact atccggcgga gtttatggcg gcggtaatga ccgccgatat
    50821 ggacaacacc gagaaggtgg tgggcctggt ggatgagtgc tggcggatgg ggctgaaaat
    50881 cctgccacca gatataaact ccggtcttta ccatttccac gtcaacgacg acggcgaaat
    50941 cgtgtatggt attggcgcca tcaaaggggt aggtgaaggt ccgattgagg ccatcatcga
    51001 agcccgtaat aaaggcggct acttccgcga actgtttgat ctctgcgccc gtaccgacac
    51061 caaaaagtta aaccggcggg tgctggaaaa actgatcatg tccggggcgt ttgaccgtct
    51121 tgggccacac cgcgcggcgc tgatgaactc gctgggtgat gcgttaaaag cggcagatca
    51181 acacgcgaaa gcggaagcta tcggtcaggc cgatatgttc ggcgtgctgg ccgaagagcc
    51241 ggaacaaatt gaacaatcct acgccagctg ccaaccgtgg ccggagcagg tggtgttaga
    51301 tggggaacgt gaaacgttag gtctgtacct tacgggacac cctatcaacc agtatttaaa
    51361 agagattgag cgttatgtcg gaggcgtaag gctgaaagac atgcacccga cagaacgtgg
    51421 taaagtcatc acggctgcgg ggctcgttgt tgccgcgcgg gttatggtca ccaagcgcgg
    51481 caatcgtatc ggtatctgca cgctggatga ccgttccggg cggctggaag tgatgttgtt
    51541 tactgacgcc ctggataaat accagcaatt gctggaaaaa gaccgcatac ttatcgtcag
    51601 cggacaggtc agctttgatg acttcagcgg tgggcttaaa atgaccgctc gcgaagtgat
    51661 ggatattgac gaagcccggg aaaaatatgc tagcgggctt gctatctcgc tgacggacag
    51721 gcaaattgat gaccagcttt taaaccgact ccgtcagtct ctggaacccc accgctctgg
    51781 gacaattcca gtacatctct actatcagag ggcggatgca cgcgcgcggt tgcgttttgg
    51841 cgcgacgtgg cgtgtctctc cgagcgatcg tttattaaac gatctccgtg gcctcattgg
    51901 ttcggagcag gtggaactgg agtttgacta atacaggaat actatgagtc tgaatttcct
    51961 tgattttgaa cagccgattg cagagctgga agcgaaaatc gattctctga ctgcggttag
    52021 ccgtcaggat gagaaactgg atattaacat cgatgaagaa gtgcatcgtc tgcgtgaaaa
    52081 aagcgtagaa ctgacacgta aaatcttcgc cgatctcggt gcatggcaga ttgcgcaact
    52141 ggcacgccat ctacagcgtc cttataccct ggattacgtt cgcctggcat ttgatgaatt
    52201 tgacgaactg gctggcgacc gcgcgtatgc agacgataaa gctatcgtcg gtggtatcgc
    52261 ccgtcttgac ggtcgtccgg tgatgatcat tggtcatcaa aaaggtcgtg aaaccaaaga
    52321 aaaaattcgc cgtaactttg gtatgccagc gccagaaggt taccgcaaag cactgcgtct
    52381 gatgcaaatg gctgaacgct ttaagatgcc tatcatcacc tttatcgaca ccccgggggc
    52441 ttatcctggc gtgggcgcag aagagcgtgg tcagtctgaa gccattgcac gcaacctgcg
    52501 tgaaatgtct cgcctcggcg taccggtagt ttgtacggtt atcggtgaag gtggttctgg
    52561 cggtgcgctg gcgattggcg tgggcgataa agtgaatatg ctgcaataca gcacctattc
    52621 cgttatctcg ccggaaggtt gtgcgtccat tctgtggaag agcgccgaca aagcgccgct
    52681 ggcggctgaa gcgatgggta tcatcgctcc gcgtctgaaa gagctgaaac tgatcgactc
    52741 catcatcccg gaaccgctgg gcggcgctca ccgtaacccg gaagcgatgg cggcatcgtt
    52801 gaaagcgcaa ctgctggcgg atctggccga tctcgatgtg ttaagcactg aagatttaaa
    52861 aaatcgtcgt tatcagcgcc tgatgagcta cggttacgcg taattcgcaa aagttctgaa
    52921 aaagggtcac ttcggtggcc cttttttatc gccacggttt gagcaggcta tgattaagga
    52981 aggattttcc aggaggaaca catgaacatc attgccatta tgggaccgca tggcgtcttt
    53041 t
//
LOCUS       DAJVUN010000004        51109 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.004, whole genome shotgun sequence.
ACCESSION   DAJVUN010000004 DAJVUN010000000
VERSION     DAJVUN010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 51109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 51109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..51109
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.004"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..221
                     /locus_tag="OQQ76_000174"
     CDS             <1..221
                     /locus_tag="OQQ76_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1966799.1"
                     /translation="QTVIYRIHPDARNRLTAGYMTSYFIGGAAGSLISASAWQHGGWA
                     GVCLAGATIALVNLLVWWRGFHRQEAAN"
     gene            345..1082
                     /gene="ygaZ"
                     /locus_tag="OQQ76_000175"
     CDS             345..1082
                     /gene="ygaZ"
                     /locus_tag="OQQ76_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine exporter subunit YgaZ"
                     /protein_id="HCS1966800.1"
                     /translation="MESPTPQPALGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG
                     FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRII
                     QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA
                     FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP
                     VAILAGIVCGCLTALIQAFWQGAPDEL"
     gene            1072..1407
                     /gene="ygaH"
                     /locus_tag="OQQ76_000176"
     CDS             1072..1407
                     /gene="ygaH"
                     /locus_tag="OQQ76_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine transporter subunit YgaH"
                     /protein_id="HCS1966801.1"
                     /translation="MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLD
                     TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG
                     LAWKVMAII"
     gene            1498..2028
                     /gene="emrR"
                     /locus_tag="OQQ76_000177"
     CDS             1498..2028
                     /gene="emrR"
                     /locus_tag="OQQ76_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter EmrAB
                     transcriptional repressor EmrR"
                     /protein_id="HCS1966802.1"
                     /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENR
                     NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE
                     RRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLS
                     RLDQMEQDGVVLEAMS"
     gene            2155..3327
                     /gene="emrA"
                     /locus_tag="OQQ76_000178"
     CDS             2155..3327
                     /gene="emrA"
                     /locus_tag="OQQ76_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrA"
                     /protein_id="HCS1966803.1"
                     /translation="MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFL
                     VLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFE
                     KAKTALASSVRQTYQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREEL
                     QHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRI
                     VSPMTAYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITT
                     DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYS
                     LRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG"
     gene            3344..4909
                     /gene="emrB"
                     /locus_tag="OQQ76_000179"
     CDS             3344..4909
                     /gene="emrB"
                     /locus_tag="OQQ76_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrB"
                     /protein_id="HCS1966804.1"
                     /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL
                     GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSL
                     NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY
                     ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI
                     MLDRGKELDWFSSQEIIILTVVAVVAVVAVVAVVAICFLIVWELTDDNPIVDLSLFKS
                     RNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIG
                     RFAHKLDMRRLVTFSFIMYVVCFYWRAYTFEPGMDFGASAWPQFIQGVAVACFFMPLT
                     TITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNP
                     NAQAMYSQLEGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAK
                     PPFGAGGGGGGAH"
     gene            complement(4973..5488)
                     /gene="luxS"
                     /locus_tag="OQQ76_000180"
     CDS             complement(4973..5488)
                     /gene="luxS"
                     /locus_tag="OQQ76_000180"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008458247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HCS1966805.1"
                     /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN
                     KEVMPERGSHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD
                     AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
                     LPKEKLQELHI"
     gene            complement(5638..7194)
                     /gene="gshA"
                     /locus_tag="OQQ76_000181"
     CDS             complement(5638..7194)
                     /gene="gshA"
                     /locus_tag="OQQ76_000181"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1966806.1"
                     /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGH
                     PEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPL
                     SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW
                     QAKCGDISGTDAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAIFSSFLQGKPTSLPF
                     EKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAK
                     IGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI
                     NPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLG
                     IGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSAR
                     ILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMETADTE
                     PFAVWLEKHA"
     gene            complement(7267..7695)
                     /locus_tag="OQQ76_000182"
     CDS             complement(7267..7695)
                     /locus_tag="OQQ76_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1966807.1"
                     /translation="MSEALSLFSLFARSFLSATLLPGNSEVVLVAMLLSGISYPWVLV
                     LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC
                     LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH"
     gene            complement(7692..8258)
                     /gene="yqaB"
                     /locus_tag="OQQ76_000183"
     CDS             complement(7692..8258)
                     /gene="yqaB"
                     /locus_tag="OQQ76_000183"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1-phosphate/6-phosphogluconate
                     phosphatase"
                     /protein_id="HCS1966808.1"
                     /translation="MYERYAGLIFDMDGTILDTEPTHRKAWREVLGHYGLQYDVQAMI
                     ALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVRSMLLDSVEPLPLVEVVKSWHGR
                     RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADHVKHHKPAPDTFLLCAQRMGVQPT
                     QCVVFEDADFGIQAARAAGMDAVDVRLL"
     gene            complement(8539..8615)
                     /locus_tag="OQQ76_000184"
     tRNA            complement(8539..8615)
                     /locus_tag="OQQ76_000184"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8579..8581),aa:Arg,seq:acg)
     gene            complement(8814..8890)
                     /locus_tag="OQQ76_000185"
     tRNA            complement(8814..8890)
                     /locus_tag="OQQ76_000185"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8854..8856),aa:Arg,seq:acg)
     gene            complement(9088..9164)
                     /locus_tag="OQQ76_000186"
     tRNA            complement(9088..9164)
                     /locus_tag="OQQ76_000186"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9128..9130),aa:Arg,seq:acg)
     gene            complement(9168..9260)
                     /locus_tag="OQQ76_000187"
     tRNA            complement(9168..9260)
                     /locus_tag="OQQ76_000187"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9224..9226),aa:Ser,seq:gct)
     gene            complement(9576..9761)
                     /gene="csrA"
                     /locus_tag="OQQ76_000188"
     CDS             complement(9576..9761)
                     /gene="csrA"
                     /locus_tag="OQQ76_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HCS1966809.1"
                     /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR
                     EEIYQRIQAEKSQQSSY"
     gene            complement(9996..12626)
                     /gene="alaS"
                     /locus_tag="OQQ76_000189"
     CDS             complement(9996..12626)
                     /gene="alaS"
                     /locus_tag="OQQ76_000189"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HCS1966810.1"
                     /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM
                     NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY
                     FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN
                     KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ
                     FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL
                     SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL
                     VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG
                     ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI
                     RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD
                     KGELKGANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSA
                     THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNL
                     PIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI
                     ISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR
                     QLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG
                     STIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD
                     AAALPAALASVKGWVSAKLQ"
     gene            complement(12754..13254)
                     /gene="recX"
                     /locus_tag="OQQ76_000190"
     CDS             complement(12754..13254)
                     /gene="recX"
                     /locus_tag="OQQ76_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HCS1966811.1"
                     /translation="MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKN
                     GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS
                     REATEKAMRECDIDWCALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDI
                     WRNFAD"
     gene            complement(13497..14558)
                     /gene="recA"
                     /locus_tag="OQQ76_000191"
     CDS             complement(13497..14558)
                     /gene="recA"
                     /locus_tag="OQQ76_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HCS1966812.1"
                     /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG
                     SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP
                     IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
                     GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF
                     YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV
                     DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS
                     TPDFSVDDSEGVAETNEDF"
     gene            complement(14638..15135)
                     /gene="pncC"
                     /locus_tag="OQQ76_000192"
     CDS             complement(14638..15135)
                     /gene="pncC"
                     /locus_tag="OQQ76_000192"
                     /EC_number="3.5.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidase"
                     /protein_id="HCS1966813.1"
                     /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAG
                     SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSI
                     SGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
                     FLQNT"
     gene            complement(15280..16365)
                     /gene="mltB"
                     /locus_tag="OQQ76_000193"
     CDS             complement(15280..16365)
                     /gene="mltB"
                     /locus_tag="OQQ76_000193"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HCS1966814.1"
                     /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQ
                     HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT
                     SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG
                     VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA
                     GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMAN
                     GQAPGLPNGFKTRYSISQLATAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT
                     ITRYNHSTHYAMAVWQLGQAVALARVQ"
     gene            16621..17184
                     /gene="srlA"
                     /locus_tag="OQQ76_000194"
                     /gene_synonym="gutA"
     CDS             16621..17184
                     /gene="srlA"
                     /locus_tag="OQQ76_000194"
                     /gene_synonym="gutA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HCS1966815.1"
                     /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL
                     INFIGQHRIERFAQRCAGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWV
                     TDLTTAIFEKKMGIQLEQKVHLAGATS"
     gene            17181..18170
                     /gene="srlE"
                     /locus_tag="OQQ76_000195"
                     /gene_synonym="gutE"
     CDS             17181..18170
                     /gene="srlE"
                     /locus_tag="OQQ76_000195"
                     /gene_synonym="gutE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HCS1966816.1"
                     /translation="MTRIRIEKGTGGWGGPLELEATPGKKIVYITAGTRPAIVDKLAQ
                     LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY
                     IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGSAVA
                     VLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVMLA
                     SHPLGLVMLALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAIN
                     AQAACDFIPVGLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ"
     gene            18181..18552
                     /gene="srlB"
                     /locus_tag="OQQ76_000196"
                     /gene_synonym="gutB"
     CDS             18181..18552
                     /gene="srlB"
                     /locus_tag="OQQ76_000196"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HCS1966817.1"
                     /translation="MTVIYKTTITRIGASATDALSDQMLITFREGAPADLEEYCFIHC
                     HGELKGALHPGLQFTLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV
                     AGPVPDDIAPGSVLKFESVKE"
     gene            18556..19335
                     /gene="srlD"
                     /locus_tag="OQQ76_000197"
     CDS             18556..19335
                     /gene="srlD"
                     /locus_tag="OQQ76_000197"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HCS1966818.1"
                     /translation="MNQVAVVIGGGQTLGAFLCHGLVAEGYRVAVVDIQSDKAANVAQ
                     EINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL
                     GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG
                     GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDK
                     VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF"
     gene            19440..19799
                     /gene="gutM"
                     /locus_tag="OQQ76_000198"
     CDS             19440..19799
                     /gene="gutM"
                     /locus_tag="OQQ76_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HCS1966819.1"
                     /translation="MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGR
                     SSGRFKPRVVVAIALDDQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIFPH
                     DPLSQNALSLALKLKRG"
     gene            19866..20639
                     /gene="srlR"
                     /locus_tag="OQQ76_000199"
                     /gene_synonym="gutR"
     CDS             19866..20639
                     /gene="srlR"
                     /locus_tag="OQQ76_000199"
                     /gene_synonym="gutR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol operon DNA-binding transcriptional
                     repressor SrlR"
                     /protein_id="HCS1966820.1"
                     /translation="MKPRQRQAAILEYLQKQSKCSVEELAQYFDTTGTTIRKDLVILE
                     HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST
                     VLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
                     FEHFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV
                     VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE"
     gene            20632..21596
                     /gene="gutQ"
                     /locus_tag="OQQ76_000200"
                     /pseudo
     CDS             20632..21596
                     /gene="gutQ"
                     /locus_tag="OQQ76_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311591.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase GutQ"
     gene            complement(21593..23107)
                     /gene="norR"
                     /locus_tag="OQQ76_000201"
     CDS             complement(21593..23107)
                     /gene="norR"
                     /locus_tag="OQQ76_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311592.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HCS1966821.1"
                     /translation="MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL
                     RYDSRQFIPLAIDGLAKGVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI
                     PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA
                     LLIEQLESQNMMPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG
                     TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE
                     MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE
                     VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRLGLSRVVLSAGAR
                     NLLQHYRFPGNVRELEHAIHRAVVLARATRNGDEVILEAQHFAFPEVTLPPPEAAAVP
                     VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGMKD"
     gene            23293..24732
                     /gene="norV"
                     /locus_tag="OQQ76_000202"
     CDS             23293..24732
                     /gene="norV"
                     /locus_tag="OQQ76_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic nitric oxide reductase
                     flavorubredoxin"
                     /protein_id="HCS1966822.1"
                     /translation="MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK
                     NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC
                     TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA
                     VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL
                     PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI
                     AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR
                     FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALELCREHGREI
                     ARQWALEPLPQSTVNKVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT
                     PWSEVPDNFLCPECSLGKDVFEELASEAK"
     gene            24729..25862
                     /gene="norW"
                     /locus_tag="OQQ76_000203"
     CDS             24729..25862
                     /gene="norW"
                     /locus_tag="OQQ76_000203"
                     /EC_number="1.18.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavorubredoxin reductase NorW"
                     /protein_id="HCS1966823.1"
                     /translation="MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKP
                     DLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQWQYDK
                     LVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDF
                     CRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGILA
                     TLDHQRSIEVDAVIAATGLRPETALARRAGLTINRGVCVDSYLQTSNDDIYALGDYAE
                     INGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPTMLVKIKTPELPLHLAGETQRQDLR
                     WQINTERQGMVARGVDDADQLRAFVVSEDRMKEAFGLLKTLPM"
     gene            complement(25990..28242)
                     /gene="hypF"
                     /locus_tag="OQQ76_000204"
     CDS             complement(25990..28242)
                     /gene="hypF"
                     /locus_tag="OQQ76_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HCS1966824.1"
                     /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD
                     GVEVRLREDPETFLVQLHQHCPPLARIDSVEREPYIWSQLPTEFTIRQSAGGAMNTQI
                     VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP
                     ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI
                     KGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIV
                     LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN
                     EQALADLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALALPPGFKNVP
                     PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPKYVV
                     HDAHPGYVSSQWAREMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGK
                     NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYPE
                     TASVQQQNWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEA
                     LAASCHGVTHPVTMPLVDNQLDLAAFWQQWLNWQAQVNQRAWAFHDALAQGFAALMRE
                     QATMRGITTLVFSGGVIHNRLLRARLSHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA
                     RWLAGEVQNG"
     gene            complement(28395..28922)
                     /gene="hydN"
                     /locus_tag="OQQ76_000205"
     CDS             complement(28395..28922)
                     /gene="hydN"
                     /locus_tag="OQQ76_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport protein HydN"
                     /protein_id="HCS1966825.1"
                     /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI
                     HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG
                     AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL
                     EQLSAEKRRRTALMF"
     gene            complement(29071..30081)
                     /gene="ascG"
                     /locus_tag="OQQ76_000206"
     CDS             complement(29071..30081)
                     /gene="ascG"
                     /locus_tag="OQQ76_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator AscG"
                     /protein_id="HCS1966826.1"
                     /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESG
                     YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS
                     AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVW
                     CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIA
                     NGKWTPASGAEGVETLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD
                     DIAIAPYIVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIHRDSLIAL
                     SR"
     gene            30341..31741
                     /gene="ascF"
                     /locus_tag="OQQ76_000207"
     CDS             30341..31741
                     /gene="ascF"
                     /locus_tag="OQQ76_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose/arbutin/salicin transporter
                     subunit IIBC"
                     /protein_id="HCS1966827.1"
                     /translation="MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDQLIDS
                     PTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTLRRI
                     GAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF
                     LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYT
                     YTAIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS
                     AISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSE
                     IGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIAS
                     LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFIL
                     TLLLGFEDIPVEEAAA"
     gene            31807..33231
                     /gene="ascB"
                     /locus_tag="OQQ76_000208"
     CDS             31807..33231
                     /gene="ascB"
                     /locus_tag="OQQ76_000208"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase AscB"
                     /protein_id="HCS1966828.1"
                     /translation="MSVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMA
                     VKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD
                     EITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRY
                     ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASA
                     LAAKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPA
                     YSARVFREKGVTIDKALGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSL
                     RNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDELAANGEINDDYR
                     ISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGT
                     LTRTRKKSFWWYKKVIASNGEDLE"
     gene            complement(33390..33860)
                     /gene="hycI"
                     /locus_tag="OQQ76_000209"
     CDS             complement(33390..33860)
                     /gene="hycI"
                     /locus_tag="OQQ76_000209"
                     /EC_number="3.4.23.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation peptidase HycI"
                     /protein_id="HCS1966829.1"
                     /translation="MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE
                     NDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK
                     EDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE"
     gene            complement(33853..34263)
                     /gene="hycH"
                     /locus_tag="OQQ76_000210"
     CDS             complement(33853..34263)
                     /gene="hycH"
                     /locus_tag="OQQ76_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase assembly protein HycH"
                     /protein_id="HCS1966830.1"
                     /translation="MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC
                     LEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA
                     QTSHQQEWSTMLLSMLHDIHQENAIYLMVRRLRD"
     gene            complement(34260..34938)
                     /locus_tag="OQQ76_000211"
                     /pseudo
     CDS             complement(34260..34938)
                     /locus_tag="OQQ76_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417199.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
     gene            complement(34938..35480)
                     /gene="hycF"
                     /locus_tag="OQQ76_000212"
     CDS             complement(34938..35480)
                     /gene="hycF"
                     /locus_tag="OQQ76_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycF"
                     /protein_id="HCS1966831.1"
                     /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCA
                     ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK
                     KEDFLQQSRFALCNCRVCNHPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR
                     QKCQVPSDRIELTRHMKEAI"
     gene            complement(35490..37199)
                     /gene="hycE"
                     /locus_tag="OQQ76_000213"
     CDS             complement(35490..37199)
                     /gene="hycE"
                     /locus_tag="OQQ76_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycE"
                     /protein_id="HCS1966832.1"
                     /translation="MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTITVKVNYLPE
                     VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWVTVRVEVDANKPEYP
                     SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA
                     PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR
                     GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL
                     EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR
                     RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTIGIGRLDPEIARDFSNVGP
                     MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD
                     NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT
                     LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS
                     PLK"
     gene            complement(37217..38140)
                     /gene="hycD"
                     /locus_tag="OQQ76_000214"
     CDS             complement(37217..38140)
                     /gene="hycD"
                     /locus_tag="OQQ76_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycD"
                     /protein_id="HCS1966833.1"
                     /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR
                     DIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY
                     LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI
                     TDTVYHWPLSQSIPLVLALCTCAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG
                     VMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFEN
                     SMARLRLDITPRITWAGFGFAFLAFVSLLAA"
     gene            complement(38143..39886)
                     /gene="hycC"
                     /locus_tag="OQQ76_000215"
                     /pseudo
     CDS             complement(38143..39886)
                     /gene="hycC"
                     /locus_tag="OQQ76_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311606.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit 3"
     gene            complement(39883..40494)
                     /gene="hycB"
                     /locus_tag="OQQ76_000216"
     CDS             complement(39883..40494)
                     /gene="hycB"
                     /locus_tag="OQQ76_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycB"
                     /protein_id="HCS1966834.1"
                     /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEK
                     ESAPQLCHHCEDAPCAVVCPVNVITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGS
                     RPLDIPANANTPKAPPAPPAPARISTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCP
                     TKALHLVDNTDIARVSKRKRELTFNTDFGDLTLFQQAQSGEAK"
     gene            complement(40619..41080)
                     /gene="hycA"
                     /locus_tag="OQQ76_000217"
     CDS             complement(40619..41080)
                     /gene="hycA"
                     /locus_tag="OQQ76_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase regulator HycA"
                     /protein_id="HCS1966835.1"
                     /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH
                     AMSCAPDKELCFVLFEHFRIYVTLADGFNSHTIEYYVETKEGEDKQRIAQAQLSIDGM
                     IDGKVNIRDREQVLEHYLEKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA"
     gene            41292..41642
                     /gene="hypA"
                     /locus_tag="OQQ76_000218"
     CDS             41292..41642
                     /gene="hypA"
                     /locus_tag="OQQ76_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1966836.1"
                     /translation="MHEITLCQWALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSL
                     AFCFDLVCRGSVAEGCKLHLEEQEVECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVA
                     DDGLQIRRIEIDQE"
     gene            41646..42518
                     /gene="hypB"
                     /locus_tag="OQQ76_000219"
     CDS             41646..42518
                     /gene="hypB"
                     /locus_tag="OQQ76_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HCS1966837.1"
                     /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIK
                     APEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR
                     KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV
                     NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG
                     EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG
                     MDQWLNWLETQRCA"
     gene            42509..42781
                     /gene="hypC"
                     /locus_tag="OQQ76_000220"
     CDS             42509..42781
                     /gene="hypC"
                     /locus_tag="OQQ76_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 3 maturation protein HypC"
                     /protein_id="HCS1966838.1"
                     /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV
                     GQWVLVHVGFAMSVITEAEARDTLDALQNMFDVEPDVGALLYGEEK"
     gene            42781..43902
                     /gene="hypD"
                     /locus_tag="OQQ76_000221"
     CDS             42781..43902
                     /gene="hypD"
                     /locus_tag="OQQ76_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HCS1966839.1"
                     /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH
                     THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV
                     PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ
                     AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF
                     HRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV
                     NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH
                     QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA"
     gene            43899..44909
                     /gene="hypE"
                     /locus_tag="OQQ76_000222"
     CDS             43899..44909
                     /gene="hypE"
                     /locus_tag="OQQ76_000222"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation carbamoyl dehydratase
                     HypE"
                     /protein_id="HCS1966840.1"
                     /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLA
                     QLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPCYLSCGFILEE
                     GLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWG
                     AQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKA
                     LRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV
                     IAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR
                     IC"
     gene            44983..47060
                     /gene="flhA"
                     /locus_tag="OQQ76_000223"
                     /pseudo
     CDS             44983..47060
                     /gene="flhA"
                     /locus_tag="OQQ76_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311614.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase transcriptional activator
                     FlhA"
     gene            complement(47097..47450)
                     /locus_tag="OQQ76_000224"
     CDS             complement(47097..47450)
                     /locus_tag="OQQ76_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
                     /protein_id="HCS1966841.1"
                     /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR
                     LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP
                     VPELPEKYRPKKPRE"
     gene            complement(47527..47661)
                     /locus_tag="OQQ76_000225"
     CDS             complement(47527..47661)
                     /locus_tag="OQQ76_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966842.1"
                     /translation="MIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIASVE
                     "
     gene            47737..50298
                     /gene="mutS"
                     /locus_tag="OQQ76_000226"
     CDS             47737..50298
                     /gene="mutS"
                     /locus_tag="OQQ76_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCS1966843.1"
                     /translation="MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDA
                     KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS
                     KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP
                     ADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG
                     TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN
                     LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF
                     TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA
                     LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL
                     EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE
                     YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN
                     YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM
                     RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH
                     NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME
                     DVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
                     ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV"
     gene            50404..51061
                     /gene="pphB"
                     /locus_tag="OQQ76_000227"
                     /pseudo
     CDS             50404..51061
                     /gene="pphB"
                     /locus_tag="OQQ76_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311617.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
BASE COUNT        12047 a        13940 c        13283 g        11839 t
ORIGIN      
        1 accagacggt aatttatcga atacaccctg atgcgcgtaa tcgcctgacc gcaggttaca
       61 tgaccagcta ctttattggc ggtgccgccg gttcgctaat ttcagcctca gcctggcaac
      121 atggcggttg ggctggtgtt tgtctggctg gcgcgacgat tgccctggtt aacttactgg
      181 tctggtggcg aggttttcat cgtcaggaag ccgcaaatta agcaatcagc aaccgttttc
      241 gtggctttac acttataagg gtgttaagaa gcccatcagt ctgataaggt taagatattc
      301 attcagtcta tttataatat taacaatcgt taagcgtaca ctctatggaa agccctactc
      361 cacagcctgc tcttggttcg gcgaccttca tggaaggatg caaagacagt ttaccgattg
      421 ttattagtta tattccggtg gcctttgcgt tcggtctgaa tgcgacccgt ctgggattct
      481 ctcctctcga aagcgttttt ttctcctgca tcatttatgc aggcgcgagc cagttcgtca
      541 ttaccgcgat gctggcagcc gggagtagtt tgtgggttgc tgcactgacc gtcatggcaa
      601 tggatgttcg ccatgtgttg tatggcccgt cactgcgtag ccgtattatt cagcgtctgc
      661 aaaaatcgaa aaccgccctg tgggcatttg gcctgacgga tgaggttttt gccgctgcaa
      721 ccgcaaaact ggtacgcaat aatcgccgct ggagcgagaa ctggatgatc ggcattgcct
      781 tcagttcatg gtcatcgtgg gtatttggta cggtaatagg ggcattctcc ggcagcggct
      841 tgctgcaagg ttatcccgcc gttgaagctg cattaggttt tatgcttccg gcactcttta
      901 tgagtttcct gctcgcctct ttccagcgca aacaatctct ttgcgttacc gcagcgttag
      961 ttggtgccct tgcaggcgta acgctatttt ctattcccgt cgccattctg gcaggcattg
     1021 tctgtggctg tctcactgcg ttaatccagg cattctggca aggagcgccc gatgagctat
     1081 gaggttctgc tgcttgggtt actggttggc gtggcgaatt attgcttccg ctatttgccg
     1141 ctgcgcctgc gtgtgggtaa tgcccgccca accaaacgtg gcgcggtagg tattttgctc
     1201 gacaccattg gcatcgcctc gatatgcgct ctgctggttg tctctaccgc accagaagtg
     1261 atgcacgata cacgccgttt cgtgcccacg ctggtcggct tcgcggtact gggtgccagt
     1321 ttctataaaa cacgcagcat tatcatccca acactgctta gtgcgctggc ctatgggctc
     1381 gcctggaaag tgatggcgat tatataaccc acaagaatca tttttctaaa acaatacatt
     1441 tactttattt gtcactgtcg ttactatatc ggctgaaatt aatgaggtca tacccaaatg
     1501 gatagttcgt ttacgcccat tgaacaaatg ctaaaatttc gcgccagccg ccacgaagat
     1561 tttccttatc aggagatcct tctgactcgt ctttgcatgc acatgcaaag caagctgctg
     1621 gagaaccgca ataaaatgct gaaggctcag gggattaacg agacgttgtt tatggcgttg
     1681 attacgctgg agtctcagga aaaccacagt attcagcctt ctgaattaag ttgtgctctt
     1741 ggatcatccc gtaccaacgc gacgcgtatt gccgatgaac tggaaaaacg cggttggatc
     1801 gaacgtcgtg aaagcgataa cgatcgccgc tgcctgcatc tgcaattaac ggaaaaaggt
     1861 cacgagtttt tgcgcgaggt tttaccaccg cagcataact gcctgcatca actctggtcc
     1921 gcgctcagca caacagaaaa agatcagctc gagcaaatca cccgcaaatt gctctcccgt
     1981 ctcgaccaga tggaacaaga cggtgtggtt ctcgaagcga tgagctaacg cgtcatctcg
     2041 ctcaaaaatc cagatttata aaagaaaaaa tgaccggcca gcatcgcaac atgctggcct
     2101 ttttggcaag caggtcggct cagccgatga gttaagaaga tcgtggagaa caatatgagc
     2161 gcaaatgcgg agactcaaac cccgcagcaa ccggtaaaga agagcggcaa acgtaagcgt
     2221 ctgctcctcc ttctcacctt gctctttata attattgccg tagcgatagg gatttattgg
     2281 tttttggtac tgcgtcattt cgaagaaacc gatgacgcat acgtggcagg gaatcagatt
     2341 caaattatgt ctcaggtgtc tggcagcgtg acgaaagtct gggccgataa caccgatttt
     2401 gtaaaagaag gcgatgttct ggtcactctc gacccgacag atgctcgcca ggcgtttgaa
     2461 aaagccaaaa ctgcactggc ttccagcgtt cgccaaacct accagctgat gattaacagc
     2521 aaacagttac aggcgaatat tgaggtgcaa aaaatcgccc tcgcgaaagc acaaagcgac
     2581 tacaaccgcc gtgtgccgct gggcaatgcc aacctgattg gtcgcgaaga gctgcaacac
     2641 gcccgcgacg ccgtcaccag tgcccaggcg caactggacg tcgctattca acaatacaat
     2701 gccaatcagg cgatgattct ggggactaaa ctggaagatc agcctgccgt gcaacaggct
     2761 gccaccgaag tacgtaacgc ctggctggcg ctggagcgta cccgtattgt cagtccgatg
     2821 accgcttatg tctcccgccg cgcggtacag cctggggcgc aaattagccc aacgacgccg
     2881 ctgatggcgg tcgttccagc caccaatatg tgggtggatg ccaactttaa agagacgcag
     2941 attgccaata tgcgtatcgg tcagccggtc actatcacca cggatattta cggcgatgat
     3001 gtgaaataca ccggtaaagt ggttggtctg gatatgggca caggtagcgc attctcactg
     3061 cttccggcgc aaaatgcgac cggtaactgg atcaaagtcg ttcagcgtct acctgtgcgt
     3121 atcgaactgg accagaaaca gctggagcaa tactcgctgc gcattggttt gtccacgctg
     3181 gtgagcgtca ataccactaa ccgtgacggt caggtactgg caaataaagt acgttcaaca
     3241 ccggtcgcgg taagtaccgc gcgtgaaatc agcctggcac ctgtcaataa actgatcgac
     3301 gatatcgtaa aagctaacgc tggctaatcc agaggtgcgt gtaatgcaac agcaaaaacc
     3361 gctggaaggc gcgcaactgg tcattatgac gattgcgctg tcactggcga cattcatgca
     3421 ggtgctggac tccaccattg ctaacgtggc gatccccact atcgccggga atctgggctc
     3481 atcgctcagc cagggaacgt gggtaatcac ttctttcggg gtggcgaatg ccatctcgat
     3541 cccgcttacc ggctggctgg caaagcgcgt cggggaagtg aaactgttcc tttggtccac
     3601 catcgccttt gctattgcgt cgtgggcgtg tggtgtctcc agcagcctga atatgctgat
     3661 cttcttccgt gtgattcagg ggattgtcgc tgggccgttg atcccacttt cgcaaagtct
     3721 tttgctgaat aattacccgc cagccaaacg ctcaatcgcg ctggcgttgt ggtcgatgac
     3781 ggtgattgtc gcgccaattt gcggcccaat cctcggcggt tatatcagcg ataattacca
     3841 ctggggctgg atattcttca tcaacgtgcc aattggcgtg gcggtggtgt tgatgacact
     3901 gcaaaccctg cgcggacgcg aaacccgcac cgaacggcgg cggattgatg ccgtggggct
     3961 ggcactgctg gttattggta tcggtagcct gcagattatg ctcgaccgcg gtaaagagct
     4021 ggactggttt tcatcacagg aaattatcat tcttaccgtg gtggcggtgg tggcggtggt
     4081 ggcggtggtg gcggtggtgg ctatctgctt cctgattgtc tgggagctga ccgacgataa
     4141 cccgatagtc gatctgtcgt tgtttaagtc gcgcaacttc accatcggct gcttgtgtat
     4201 cagcctcgcg tatatgctct acttcggcgc gattgttctg ctgccgcagt tgttgcagga
     4261 ggtctacggt tacacggcga cctgggcagg tttggcctct gcgccggtag ggattattcc
     4321 ggtgatcctg tcgccgatta tcggccgctt cgcgcataaa ctggatatgc ggcggctggt
     4381 aaccttcagc tttattatgt atgtcgtctg cttctactgg cgtgcctata cctttgaacc
     4441 aggtatggat tttggcgcgt cggcctggcc gcagtttatc cagggggttg cggtggcctg
     4501 cttctttatg ccgctgacca ccattacgct gtctggtttg ccaccggaac gactggcggc
     4561 ggcatcgagc ctctctaact ttacgcgaac gctggcgggg tctattggca cgtcgataac
     4621 cacgaccatg tggaccaacc gcgagtcgat gcaccatgcg cagttgactg agtcggtaaa
     4681 cccgttcaac ccgaatgccc aggcgatgta cagtcaactg gaagggcttg ggatgacgca
     4741 acagcaggca tcaggctgga ttgcccagca gatcactaat caggggctga ttatttccgc
     4801 caatgagatc ttctggatgt cagccgggat attcctcgtc ctgctggggc tggtgtggtt
     4861 tgctaaaccg ccctttggcg caggtggcgg cggaggtggt gcgcactaag tacaactaag
     4921 ccagttcatt tgaactggct tttttcaatt aattgtgaag atagtttact gactaaatgt
     4981 gcagttcctg caacttctct ttcggcagtg ccagttcttc gttgctgttg atgcgtacgt
     5041 cacgttccag aatgctacgc gcaatatcct gcgcttcctg caacgagtgc atctggtaag
     5101 tgccacactg gtagacgttc agctccggga tctgattctg atcctgcact ttcagcacgt
     5161 cttccattgc cgctttccag gcatcagcaa cacgctgctc atctggcgta ccaatcagac
     5221 tcatataaaa accggtgcgg cagcccattg gcgagatatc gataatctct acaccattac
     5281 cgttaagatg gttacgcata aaaccagcaa acaggtgctc cagagtatgg ctccctcttt
     5341 ctggcatcac ttctttgttc ggcacgcaga agcgcagatc gaacacggtg attgcgtcgc
     5401 catgcggggt gttcattgtt ttcgccaccc gaactgcagg cgcttccatc cgggtatgat
     5461 cgactgtgaa gctatctaac aacggcattt agccacctcc ggtaattttt ttaaaaattt
     5521 tctgaactct ttcttcccag gcgagtctga gtatatgaaa gacgcgcatt tgttatcatc
     5581 atccctgaat tcagagatga aattttggcc actcacgagt ggcctttttc ttttctgtca
     5641 ggcgtgtttt tccagccaca ccgcaaacgg ttcggtatca gcggtttcca tttcctgctg
     5701 acggcgttca gatgcctcgc gctcggctac aaaatcctct tcgcgcagaa tttccaacgg
     5761 ctcttcacgc agcagattac ggtaggcttc tgcaaacgct ttgcctgttc cgccaatacc
     5821 agtatcaatc atagacctta agatacgggc agagaaagtc agatcgggat tatcgaagca
     5881 ggcgaccagt tcatcacaca ctttctgata cgcttcgccg ccgttaatgc tatccaacgt
     5941 ttgcgcgacg cgtttcagat cgcggaacag atctttaccc acctgcggta acgggaactg
     6001 cgcggtttcg cagccgatac ccagcgtcag gcccggtttg cgaccttcga ggatcacccg
     6061 gttccagtta acgcgtgtac aggcaagttc gctactgctc atttccggtg catcagccag
     6121 cgcacaccag accataaaca ggtcgaggaa tcgcacctgc tgttcatcta caccaatcgg
     6181 cgagaacggg ttgatgtcca gcgaacgcac ttcaatatat tcaatgccgc cacgtaacag
     6241 cgcatcagaa ggtgactcgc cgctgcgggt aacgcgtttt ggacgaatcg gcgcatacag
     6301 ttcgttttca atttgcagca cgttgctatt gatttgcagc ctcttaccgt ctttctcaat
     6361 accaatcttc gcgtactctt ccgatggcgt tttgattgcc tgtttaaggc ccgctacgta
     6421 ctcgtaaaga tcgttgaagg taataccaag attgctttgc gatttattgg tatagccgag
     6481 atcgctcaaa cgaagagagg tcgcatacgg caggtaatac ataccgcact cggttttctc
     6541 aaacggcagc gacgttggtt ttccttgcag gaaagaagaa aaaatcgccg gagatgcacc
     6601 aaacagataa ggaatgaccc aaccgaaacg atagtaattg cggataacgc ggaaatagcc
     6661 cgcagaaatt ttctctttgg catcagtgcc cgagatatca ccgcacttcg cttgccagaa
     6721 tgccattggc aaagagaaat tgtagtgcac gccggaaatg gtttgcatca gcgcgccgta
     6781 gcgatttttc agcccttcac gatacagcgt tttaaagcgt ccggtgttag aagtgccgta
     6841 ctgtgccagt tcgatgtcct gaccttctgc gatgtagcat ggcatactta acggccacat
     6901 ccgctcatcg cccatattgc gcgccgtata acgatgcaga tcgcgcataa aggtcaacat
     6961 atgttcaata tcaccatcca ctggtgtaat gaattccagc aatgcttccg caaaatcggt
     7021 agtaatccat ttgtgcgtca gtgcggaacc taatgcttca ggatgacctg ttgttgccag
     7081 tgtgccatca gcattaacac gcaaagtttc gcgctccagc ccacgctgta tcccctttaa
     7141 cgcctgagga tgtttttcca gccaggccag cgcctgtgat acgtccggga tcaaattgac
     7201 ctcccgcctg tcaaaatcgt tttaattagc ataactgtaa tggtgaccat atgtgcaggc
     7261 ctacaattag tgccaccaca tcatgccctg aacggtagct gctgcaactg caacatagcg
     7321 taacgcttta ccaaggcaca aaaaaaagat taccggtccc cacgagatgc gcatccatcc
     7381 cgctaacaga cacagtaaat cgccaaccac gggcatccag cttaataata gcgtgactgc
     7441 accatagcgt ttcagccagc cagtagcttt ctcttgccag cgcgatgttt tacgcaatgg
     7501 aaagaaacgc ccaaggataa cgttagttaa ccctccaagg ctattaccca ttgttgctgt
     7561 taaaactaaa acccagggat aactgatccc ggaaagcaac attgccacca gcacgacttc
     7621 ggagttgccg ggtaatagtg tagcgctgag aaaactacgg gcaaacaacg agaaaagcga
     7681 taacgcttca ctcacagcaa gcgaacatcc acggcgtcca tgcctgctgc acgggccgcc
     7741 tgaataccga aatcggcatc ttcaaagacc acacactgcg tcggttgcac gcccatacgc
     7801 tgcgcgcaca acaaaaatgt gtctggcgcg ggtttatggt gtttgacgtg atcagcagcg
     7861 acgacggcgt caaaataacg gcgtaatccc aggtgcgcca gcaatgcctc agcgatggcg
     7921 ctttcactcc ccgttcctac agccattggg cgacgaccat gccaactttt caccacttca
     7981 acaagaggaa gcggctcgac actatccagc agcatacttc ttactgcttc tgttttttca
     8041 cgcgctaacg catgcgggtc gagatcggcc tgattcagct caataattgc ctgagcaata
     8101 cgccaggtgg gcgatccatt aagcgcaatc attgcctgaa catcgtactg aagaccgtag
     8161 tgccctaata cttcgcgcca cgctttacgg tgcgtaggct ccgtatccag gattgtgcca
     8221 tccatatcaa aaattaaacc tgcataacgc tcgtacatgg tcttctcgca agtcgaaaaa
     8281 tatgacgcta ctttagcgta attgcttgat tttgtcgctg atggcgaagg agaagaaaat
     8341 tcaggaaatg gataaagtag ttatttagaa atgagatatt tttgaaggaa atttttggga
     8401 gaagatggtg catccgggag gatgactcac tggcgttcgc ccttcgggcc gttgctgacg
     8461 caacgttatc ctccctggtg cctgcggtta ataccgctat ctcttcgata ccttcattgc
     8521 tgaaggttac ggagaatatg gtgcatccgg gaggattcga acctccgacc gctcggttcg
     8581 tagccgagta ctctatccag ctgagctacg gatgcatcgg gaaaatttat tttactgctg
     8641 atattgatat cgctactaaa gccatatcaa gtaagagatg gtgcatccgg gaggattact
     8701 cgccttgcgg ctcgcccttc gggccgttgc taaagcaacg ttatcatccc tggtgcctgc
     8761 ggttaattcc gctacctctt cgataccttc attgctgaag atttcggaga atatggtgca
     8821 tccgggagga ttcgaacctc cgaccgctcg gttcgtagcc gagtactcta tccagctgag
     8881 ctacggatgc atcgggaaac ttactttact gcagattttt tgataccgct actaaagccg
     8941 tatcaagtaa gagatggtgc attcgggagg attactcgcc ttgcggctcg cccttcgggt
     9001 cgttgctaaa gcaacgttat cctccctagt gcctgcggtt ataccgccac ctcttccata
     9061 ccttcatcgc tgaaagtacg tagaatatgg tgcatccggg aggattcgaa cctccgaccg
     9121 ctcggttcgt agccgagtac tctatccagc tgagctacgg atgcaaatgg cggtgaggcg
     9181 gggattcgaa ccccggatgc agcttttgac cgcatactcc cttagcaggg gagcgccttc
     9241 agcctctcgg ccacctcacc acacgcctct tacgagtgct tcgaagaact tgtttatcgc
     9301 tcatcgtcgc tgcgtggcgc acatattact ttctgagact tataagtcaa acaatttttc
     9361 ccacactttt atcgtttgca cacttcatgc tcaattagtc tgtaaaaacg tcaaaaagag
     9421 tgttttatct acagaaaaac ggaggtctgg cagatagcag taatgcaaaa aaatggagac
     9481 ttaagttgaa tgaacgggag taaagcgaaa agactataga gtgaaggaga aattttgagg
     9541 gtgcgtctca ccgataaaga tgagacgcgg aaagattagt aactggactg ctgggatttt
     9601 tcagcctgga tacgctggta gatctcttca cggtgaacag aaacttcctt cggggcattt
     9661 acgccaatac gtacctggtt gcccttcacc cctaaaactg tcacggtgac ctcatcccca
     9721 atcatgaggg tctcaccaac tcgacgagtc agaatcagca ttctttgctc cttgaaagat
     9781 taaaagagtc gggtctctct gtatcccggc attatccatc atataacgcc aaaaagtaag
     9841 caatgacaaa cacattacat gtaagcagtc atggcattac attctgttaa acctaagttt
     9901 agccgatata cacaacttca acctgacttt atcgttgtcg atagcgttaa tgcgaatgcc
     9961 gtgaagcgag tccacggcat tgcctgacgc ttatattatt gcaatttcgc gctgacccag
    10021 cctttcacac tggctaacgc tgcaggtaag gccgcagcat ccgtaccacc ggcttgcgcc
    10081 atgtcaggac gtccaccacc cttgccgccc acctgctgag cgaccatacc aatcagttcc
    10141 cctgctttca cacgatctgt gacgtcctta gatacgcctg caatcagaga aaccttacct
    10201 tcggctaccg ttgccagcac gataattgtc gaccccagct gattttttaa atcgtcaacc
    10261 atggtacgca acattttcgg ctcaacaccg ctaagctcgc taaccaacag cttaacacca
    10321 ttaacatcaa ttgccttact ggaaagattt gcgctctcct gtgcggcagc ttgttcttta
    10381 agctgttgta gttctttttc taactgacgc gtacgttcca gtactgagcg cactttatcc
    10441 gccagattat tgctatcgcc tttcagcaga tgcgcgactt cgcttaagcg atcgctgtct
    10501 gcatgaacgg tggtgatagc gccttctccg gttaccgctt cgatacgacg aacgcctgca
    10561 gcagtacccg attcagagat gatgcggaac agaccaatat caccagtgcg gctggcgtga
    10621 gtaccgccac acagctcggt ggagaaatcg cccatgctca gcacgcgtac acgctcatca
    10681 tacttctcgc cgaacagcgc catcgcacct ttcgctttcg ccgcttcgag atccatgatg
    10741 ttggtttcga tcggcaaatt gcgacgaatc tgtgcgttca ccaggtcttc gaccacacga
    10801 atctcttccg gtttcatcgc ttcgttgtgt gagaagtcga agcgcagcac cttgtcgtta
    10861 accagtgaac ctttctgcga tacatgagtc cccagaacct ggcgcagcgc agcgtgcatc
    10921 aggtgcgttg cggagtgatt cagacgaata cgggcgcgac gagcctcatc aacatcagcc
    10981 tgcacagcgt cgcccacttt cagagaaccc gcagcaagtt taccgatgtg accaatcgcc
    11041 tggccgtatt tctgcgtatc ttccaccgcg aaggagaagt tagcgccttt cagttcgcct
    11101 ttatcaccaa cctgaccgcc ggattccgca tagaatggtg tttgatctag cacgaccaca
    11161 gcttcctggc ctgcattgat ggcatcaacc gctttaccat caacaaacag cgcggtcact
    11221 ttgccgttca gttccagatg gtcatagcct ttaaattcag atgcactatc aacacggatc
    11281 attgcgttgt aatcggcacc aaagccgctg gcttcgcgcg cgcgacgacg ctgctcttcc
    11341 attgctgctt caaaaccagc ttcgtcaact ttgatgttgc gctcacgaca aacatcagcc
    11401 gtcaggtcaa ccgggaagcc ataggtgtcg tacagacgga aagccgtttc accatccagc
    11461 gtatcaccag aaagttttgc cagctcttca tccagcaacg ccagaccgcg ctccagagta
    11521 cgggcaaact gctcttcttc agtcttcagc acctgctcaa cctgcgcctg ctggcgtttc
    11581 aggtcttcac ccgcagagcc cataacgtcg atcagcggac caaccagttt gtagaagaag
    11641 gtttctttcg cgccgagcat attgccgtga cgcactgcgc gacgaatgat acgacgcagt
    11701 acataaccac ggttttcatt ggacggcatt acgccatccg cgatcaggaa cgcacaagaa
    11761 cgaatgtggt cagcgattac gcgcagcgat ttattgctca gatcggtcgc gccagtgact
    11821 ttcgctaccg cctggatcaa cgtgcggaac aggtcgatgt catagttaga gttaacgtgt
    11881 tgcagcaccg cagcaatacg ctccagaccc ataccggtat ctacagacgg cttcggcagc
    11941 ggttccatcg tgccatctgc ctggcggttg aactgcatga agacgatgtt ccagatctca
    12001 atgtagcggt cgccgtcttc ttccggactt cccggagggc caccccaaat gtggtcgccg
    12061 tgatcgtaga agatttcggt gcacgggccg cacggaccag tgtcacccat ctgccagaag
    12121 ttgtcagatg cgtatggcgc acctttgtta tcgccgatgc gaataatacg ttcgcgcggg
    12181 atcccgactt ctttttccca gatttcgtag gcttcgtcgt cgctttcata gacggtaacc
    12241 cacagacgct ctttcggcag ggcaaaccat ttttcgctgg tcagcagttc ccatgcaaac
    12301 tgaatggcat cgtgtttgaa atagtcgccg aagctgaagt tgcccagcat ttcgaagaag
    12361 gtatggtgac gcgcggtgta accgacgttt tccaggtcgt tgtgtttacc acccgcacgc
    12421 acgcagcgtt gggaagtggt agcgcgggaa taattacgct tgtcgagccc aaggaacaca
    12481 tccttgaact gattcatccc ggcgttggta aacaacaaag ttgggtcgtt atggggtacc
    12541 agggagctgc tggcaactac ctgatgtccc ttactatgga aaaagtcgag aaacgcctga
    12601 cggatctcag cggtgctctt gctcataatt atcctgaaat caagctaacg aaatatcgcc
    12661 accagctcca gcgtgtctta accgccgggc tggtaactga aaagtgggaa taagataagt
    12721 tttcttgact gggaagtaaa ataccgtatg cgttcagtcg gcaaaatttc gccaaatatc
    12781 ctggatatct tccatcagat agccacgata gagcagaaaa cgctggatct taactttttc
    12841 tgaaaagaca gttggcaaag gttcaccata ttttcgcgtc gcctgatcgc gcgccagtgc
    12901 gcaccagtcg atgtcacatt cacgcatcgc tttttctgtc gcttcgcggg aaataccttt
    12961 ctgattcagt tcctgacgaa tacgtgcagg tccataacct ttgcggctac ggctggcgat
    13021 aaagcgcgca acaaatcggc tgtcatcgag atagccatgt tcatggcacc aggcaataac
    13081 gcgctcgtaa tcttctgccg tagcatcaat ctcttctggg ccatttttgc ccataatcgg
    13141 tgccgcgagt ttacgtcgca gttcttgctc actgtgatcg cgcaccgcca gaatgcgtac
    13201 cgcacgatcc aacaggcgag catatgccgg gcgacgggac gttgattctg tcatggcata
    13261 tccttacaac ttaaaaaagc aaaagggccg cagatgcgac ccaggttttg ctgataaaca
    13321 gatttaatag tcaatgagtg tgcagaatgt tcccgcaggc ccaattcgtt agaggatcga
    13381 ggtgagagta atttttcacg ccagtgctgg cctgttcccc tcaccctaac cctctcccca
    13441 aaggggcgag gggaccgtcc gtgcacacat tatctattat catcaataac gaacgattaa
    13501 aaatcttcgt tagtttctgc tacgccttcg ctgtcatcta cagagaaatc cggcgttgag
    13561 ttcgggttgc tcagcagcaa ctcacgtact ttcttctcga tctctttcgc ggtttccggg
    13621 ttatctttca gccaggcagt tgcattcgct ttaccctgac cgatcttctc acctttgtag
    13681 ctgtaccacg cgcctgcttt ctcgatcagc ttctctttta cgcccaggtc aaccagttcg
    13741 ccgtagaagt tgataccttc gccgtagagg atctgaaatt cagcctgttt aaacggtgca
    13801 gcgattttgt tcttcaccac tttcacgcgg gtttcgctac ccaccacgtt ttcgccctct
    13861 ttcaccgcgc cgatacgacg gatgtcgaga cgaacagagg cgtagaattt cagcgcgtta
    13921 ccaccggtag tggtttccgg gttaccgaac atcacaccaa ttttcatacg gatctggttg
    13981 atgaagatca gcagcgtgtt ggactgcttc aggttacccg ccagcttacg catcgcctgg
    14041 ctcatcatac gtgccgcaag gcccatgtga gagtcgccga tttcgccttc gatttccgct
    14101 ttcggcgtca gtgccgccac ggagtcaacg acgataacgt ctactgcacc agaacgcgcc
    14161 agggcgtcac agatttccag tgcctgctcg ccggtgtccg gctgggagca cagcaggttg
    14221 tcgatatcga cgcccagttt acgtgcgtag attgggtcca gcgcgtgttc agcatcgata
    14281 aacgcacagg ttttaccttc acgctgcgct gcggcgatca cctgcagcgt cagcgtggtt
    14341 ttaccggaag attccggtcc gtagatttcg acgatacggc ccatcggcag accacctgcc
    14401 ccaagcgcga tatccagtga aagcgaaccg gtagagatgg tttccacatc catggaacgg
    14461 tcttcaccca ggcgcatgat ggagccttta ccaaattgtt tctcaatctg gcccagtgct
    14521 gccgccaacg ctttctgttt gttttcgtcg atagccattt ttactcctgt catgccgggt
    14581 aataccggat agtcaatatg ttctgttgaa gtaattatac tgtatgctca tacagtatca
    14641 agtgttttgt agaaattgtt gccacaaggt ctgcaatgca tacgcagtag cctgacgacg
    14701 caccgcatca cggtcgccgc tgaagcattc ccgccgggta atgccttcac cgcgggcagt
    14761 ggcaaaagca aaccagacgg tgccgacagg cttctcttca ctgccgccat ccggcccggc
    14821 gataccacta atagacacgg cataatcagc acgagccgct ttcagtgcgc ctatcaccat
    14881 ttccaccacg acgggttcac tcaccgcgcc atgctgcgcc agcgtctctt cgcgtacgcc
    14941 gatcatctgc gctttggctt cgttactgta ggtgacaaat ccgcgttcaa accaggcgga
    15001 gctaccggca atatcggtaa tcactttcgc tacccaacca ccggtacaag actcggcagt
    15061 tgttacggtt gcgccacggg ctttcagcgc ctgcccaacc tgttcactta actgcatcag
    15121 ttcactgtca gtcatcacaa cctctgtcag tcaaaaattt atgccggaca agatagcact
    15181 ttcgtcagga agatggtgtt ggcgttgcaa ttttacgagg aggattcaga aaaaagctga
    15241 ttagccagag ggaagctcac gcccccctct tgcaaatagt tactgcacgc gcgccagcgc
    15301 cacggcttgt cctaactgcc agaccgccat tgcgtaatgg gtgctgtggt tataacgggt
    15361 aatggtgtag aagttcggca gaccgtacca gtactggtaa ccggtaccga catccagacg
    15421 cagcaggctg gcttgttgat ggttgcccag cggctgctgt ggcgttaaac ctgccgtggc
    15481 aagctgcgaa atgctgtacc tggttttgaa gccatttggc aagcctggag cctgaccgtt
    15541 tgccattacc gcgacctgat cgcctttcac ccagccgtgc gctttgaaat agttcgccac
    15601 gctaccgatc gcatcaaccg gatcccacag gttgatatgc ccgtcgccgc tgaaatctac
    15661 cgcatattgt ttgtaagacg acggcataaa ctgtccgtag cccatcgccc cggcaaagga
    15721 acctttcaga ttgagcggat cgtcctgctc gtcgcgcgcc atcagcagga aggtttccag
    15781 ctcgccagag aaatactccg cgcggcgtgg gtagttaaat gacagcgttg ccagcgcatc
    15841 gaggatgcga gttttcccca tcacgcgccc ccagcgggtt tcaacgccga taatcccgac
    15901 gataatttcc ggcggtacgc catacacctg ccacgcgcga ttcaacgcat cttcatactg
    15961 attccagaaa accacaccgt tctgcacgtt gtccggcgta ataaattttt tgcgataacg
    16021 cagccatgcg ccgttcggac ctgatggcgg tttcaccgat gtggttggtg cctggttatc
    16081 catcagccgc agtaccgaat ccagacgctt cgcctgggag agaatttcct gcaactgctg
    16141 acgatcgaaa ccgtgtttgt tcaccatttt gtcgatgaac tgctgggcat tcgggttatt
    16201 agcgaaatcg ccgcccatct gcatcacatt gtgctgcggc tcaagcagga agccgccaga
    16261 cggcgttccg gtggtcgttt cagtctcagt aggttttggc ttgctgctac aggcggcaag
    16321 caacacaaaa aggggaagca atgttacata acgacgcttg aacatgaggg ggccatttaa
    16381 cagattcaac caggggcaag tatggtaaag catcacgccc cgcacaagga agcggtagtc
    16441 actgcccgat acggacttta cataactcaa ctcattcccc tcgctatcct tttactcaaa
    16501 ctttcaaatt aaaatattta tctttcattt ttagatcaaa ataacacttt taaatctttc
    16561 aatctgatta gattaggttg ccgtttggta ataaaacaat aaatcctgaa ggagagaaca
    16621 atgatagaaa ccattactca tggtgcagag tggtttatcg ggctgttcca aaagggcgga
    16681 gaggtgttta ccgggatggt gaccggcatt cttccgctgt tgattagcct gctggttatc
    16741 atgaacgcac tgattaattt tatcggtcag catcgtattg aacgttttgc tcaacgttgc
    16801 gccggtaacc ctgtttcccg ttacctgctg ctaccgtgca ttggcacgtt tgtcttttgc
    16861 aatccgatga ccttaagcct gggtcgcttt atgccggaaa agtacaaacc cagctactac
    16921 gcggcggcct cttatagctg ccactcaatg aatggcctct ttccccatat caaccctggc
    16981 gaactgtttg tttatcttgg cattgccagc ggtctgacaa cgctgaacct gccacttggc
    17041 ccactggcgg tgagctatct gctggttggt ctggtcacca acttctttcg cggctgggtg
    17101 accgatctga ccaccgccat ttttgagaaa aagatgggca ttcaacttga acaaaaagtt
    17161 cacctggcag gagcaacatc atgacgcgta ttcggatcga aaaaggaacg ggtggctggg
    17221 gcggcccgct tgagctggaa gccacgccgg gcaaaaaaat cgtctatatc accgccggta
    17281 cccggcctgc gattgttgac aaactggcac aacttactgg ctggcaggct attgacggat
    17341 ttaaagaagg tgaacccgcg gaggcggaaa ttggtgtcgc ggtaatcgac tgtggcggca
    17401 cattacgctg cggcatctat ccgaaacgac gtattcccac cattaatatc cactcgacgg
    17461 gcaagtccgg tccgctggcg cagtacattg tggaagatat ttatgtctct ggcgtaaaag
    17521 aagaaaacat cactgtagtg ggtgatgcga caccacaacc ctcttccgtg ggacgtgact
    17581 atgacaccag taagaaaatc accgaacaaa gcgatggttt actggcgaag gtgggaatgg
    17641 gcatggggtc cgccgttgcg gtgctgtttc aatctggtcg tgacaccatc gacactgtat
    17701 taaaaaccat tctgccgttt atggcattcg tctcggcgct cattggcatc attatggctt
    17761 ctggccttgg tgactggatt gcccacggtc ttgctccgct ggcgagccat ccactgggtc
    17821 tggtcatgct ggcgagccat ccactgggtc tggtcatgct ggcgctcatc tgctccttcc
    17881 cactgctttc acctttcctc ggcccaggcg cagttatcgc acaggttatc ggcgtattga
    17941 ttggcgtgca gattggtctc ggcaatattc cgccgcatct ggctttaccg gcactgtttg
    18001 ccatcaacgc gcaggcggcc tgcgacttca tcccggtcgg tttgtcgctg gcggaagccc
    18061 gtcaggacac ggttcgcgtc ggtgtccctt ctgtactggt gagccgcttt ttaaccggcg
    18121 caccgactgt actgatcgcc tggtttgtct ccggttttat ctatcaatag aggctgaaac
    18181 atgaccgtta tttataagac caccatcacc cgtatcggcg cgagtgccac tgacgccctc
    18241 agcgaccaga tgctcatcac ctttcgtgaa ggcgcgccag cggacctcga agagtattgc
    18301 ttcattcatt gccacggcga gttgaaaggt gcactccatc ccggtttgca atttacgctc
    18361 gggcagcatc gctatccggt gaccgctgtt ggcagtgtgg cggaagacaa ccttcgcgaa
    18421 ctgggtcatg tcaccctgcg cttcgatggt ttaaacgaag cggaatttcc gggcactgtc
    18481 catgtggcag gccctgtacc cgacgatatc gcgccgggat cggttttgaa gtttgaatct
    18541 gttaaggagt aaaaaatgaa tcaggttgcc gttgtcatcg gtggtgggca aaccttaggc
    18601 gcgttcctgt gccacggtct ggttgccgag gggtatcgcg tcgcggttgt cgatattcag
    18661 agcgacaaag ccgcaaatgt ggcacaagaa attaacgccg aatatggtga aagtatggcg
    18721 tacggttttg gtgctgacgc cactagcgag caaagcgttc tggcgctctc tcgtggggta
    18781 gatgaaatct ttggtcgcgt ggatttgctg gtctatagcg ccggaatagc aaaagcagcc
    18841 tttatcagcg acttccagct cggcgatttt gaccgttcgc tacaagtgaa tctggtgggt
    18901 tatttcctgt gtgcccgtga attttcgcgt ttgatgatcc gcgacgggat tcaggggcgc
    18961 attattcaga tcaactcaaa atccggcaaa gtgggcagca aacacaactc tggctacagc
    19021 gcagcgaaat ttggtggcgt cgggctgact caatcactgg cgctggatct ggcggagtac
    19081 ggcattacgg tgcattcact gatgctcggt aacctgctga aatcgccgat gttccagtca
    19141 ctgttgccac aatacgcgac caagctgggt atcaaaccgg atcaagtcga gcagtattac
    19201 atcgacaaag taccgctcaa acgcggctgc gattatcaag atgtgctgaa tatgctgctg
    19261 ttctacgcca gtcctaaggc gtcgtactgc accggacagt cgatcaatgt caccggcggt
    19321 caggtgatgt tctgatcaac agcggagatc cattaaggat ctccgtgaga ctatagaatg
    19381 cctgatgcgc tacgctcatc aggcatacag gacttccgcc actacattaa gggaaagtta
    19441 tggtatccgc actcatcacc gtcgccgtta tcgcctggtg tgcgcaactg gccttaggcg
    19501 gctggcaaat ttctcgtttt aaccgtgcct tcgacacact atgccagcaa gggcgggttg
    19561 gcgtgggccg ttccagcggg cgctttaaac cgcgggtcgt ggtcgccatc gcgctggacg
    19621 atcagcagcg catcgtcgac accttgttta tgaaaggact gaccgtcttc gcccgaccgc
    19681 aaaaaattcc cgcaattacc ggtatgcatg cgggtgattt acagcccgat gtgatctttc
    19741 cccatgatcc actatcacag aatgctctat cattggcgct taaactgaaa cgtggataat
    19801 ttcgttgtga atgttacttg cttgcgaagt tatcattttg aaacctaaat caggtaatca
    19861 cgcccatgaa acctcgtcag cgtcaggccg ccattctgga gtatctgcaa aagcagagta
    19921 aatgctcggt tgaagaattg gcgcaatact ttgacaccac aggcacaacc attcgcaaag
    19981 atctggtcat tctggaacat gccggaaccg tcattcgtac ttatggcgga gtggtgttga
    20041 ataaagagga atccgatccg cctatcgatc ataaaacact catcaacacc cacaagaaag
    20101 agctgattgc agaagctgcc gttagtttta tccatgatgg cgattcgatc attcttgatg
    20161 ctggcagtac cgttttgcag atggttcccc tgctctcgcg ctttaataac atcacggtga
    20221 tgaccaacag cctgcatatc gtcaatgcgc tatccgaact ggataacgaa caaactatcc
    20281 tgatgccagg cggaacgttt cgtaaaaaat cggcctcatt tcacggacag ctggcagaga
    20341 atgccttcga acatttcagt ttcgataaat tgtttatggg caccgacggc atcgatctca
    20401 atgcgggcgt aaccaccttc aacgaggttt ataccgtcag taaggcaatg tgcaatgccg
    20461 cgcgcgaagt gattttgatg gcggactcat caaagtttgg ccgtaaaagc cccaacgtag
    20521 tttgcagtct tgaaagcgtc gataagctga ttaccgacgc aggtatcgat ccggcgtttc
    20581 gtcaggcgct ggaagagaaa gggatcgatg tgatcataac cggagagagc aatgagtgaa
    20641 gcactactga acgcgggacg tcagacgtta atgctggagt tgcaggaagc aagccgttta
    20701 ccggaacgtc tgggcgatga ttttgttcgc gccgccaata tcatcctgca ctgcgaaggc
    20761 aaagtggtgg tttcgggaat tggcaaatcg ggccacattg gtaagaaaat cgccgcaaca
    20821 cttgccagta ccggcacacc ggcttttttg tccatccggc agaagcactg cacggcgatc
    20881 tggggatgat tgaaagccgc gatgtgatgc tgtttatctc ttactccggt ggcgcgaagg
    20941 aactggatct gattattccg cgtctggaag ataaatctat cgcgctgctg gcgatgaccg
    21001 gcaaaccgac gtcaccgctg ggcctggcgg caaaagcggt gctggatatc tccgtagaac
    21061 gcgaagcctg cccgatgcac cttgcgccga cctccagcac cgtcaatacc ctgatgatgg
    21121 gtgacgcgct ggcgatggcg gtcatgcagg cgcgcggatt taatgaagaa gattttgccc
    21181 gctcccaccc agccggggca ctgggcgctc gcttgctgaa taaagtgcat catctgatgc
    21241 gccgtgacga tgccatccca caggtggcgt taaccgccag cgtgatggat gcgatgctgg
    21301 aactcagccg caccggtctg gggctggtgg cggtatgtga cgctcaacaa caggtacaag
    21361 gcgtctttac cgacggcgat ttacgtcgct ggctggtagg cggcggcgca ctcaccacgc
    21421 cagttaatga agcgatgacg acaggcggca ccacgttaca ggcgcaaagt cgcgccatcg
    21481 acgccaaaga gatcctgatg aagcgcaaaa tcactgccgc accggtggtg gatgaaaacg
    21541 gcaaactcac cggcgcaatt aacctgcagg atttctatca ggccgggatt atttaatcct
    21601 tcattcccag acgtttcgcc agccgatgca ggttggcgac gtcggtttcc agcatccgcg
    21661 cgcaggcagc ccagttatga tgattttgtg ccagtgcctg gcgaatagtt tcacgctgga
    21721 acgcttctgt cgcttcacgc aggttttgct taacaacggg caccgccgcc gcttctggcg
    21781 gcggcaacgt cacctcagga aaagcaaaat gttgcgcctc aagaatcact tcatcgccgt
    21841 tgcgggtggc tctcgccagc actaccgccc gatgaatagc atgttccagt tcgcgcacgt
    21901 tccccggaaa acgatagtgt tgcagtaaat ttcgcgctcc ggcacttaat accacgcggg
    21961 agagccccag ccgcaaacga cactgttcgc agaaataccc cgccagcaga atgacatcat
    22021 cgccccgctc acgcagcggc ggcaccgaaa gtggaaacac gctcaggcga tgaaacaagt
    22081 cagcgcgaaa tcgccctgcc agcacctctt cgcgtaagtc gcggttagtc gccgccagca
    22141 cgcgcacatc gacccgcaaa ctacggtcat cgccaacgcg ctgaatatcg ccatactgca
    22201 acaccctcag cagcttggcc tgcaatgcca acgacaactc gccgatctca tccagaaaca
    22261 gagtgccgtt atccgccatt tcaaacttcc cgctgcggtt actgatagcg ccagtaaacg
    22321 ctcctttcac atgcccgaac aactcacttt ccgccacact ttccggcagt gcagcacagt
    22381 tgagatagac cagcggattc accgcccgtg gcgaggcttc atgaatcgct ttcgccacca
    22441 gctccttacc ggttcccgtc tcaccgctga tcaggacgtt gagatcggac gccgccacaa
    22501 tctcaatctc ttttttcagt tgcgtcatgc caggggacaa gccaatcatc tgcgtctgtt
    22561 tcaccgcttc aaacggcgtg gcatcgcctg gcatcatatt ctggctttcc agttgttcaa
    22621 tcagcaacgc attgcttaac gctcccgccg ccagcgcagc aatcagccgt agctcttcgt
    22681 cgctgaaaac atcgaactga tcgggctgca tcccgtcgag cgtcagtgcg ccgatcaggt
    22741 tttgcccggc aaacaatggc agaccaacgc aggcgtgaac cttcagactc tcctgcccag
    22801 gaatcaaacc gtcataggga tcgggcaatt cgctgtctgc gggaaagcgc accacatccc
    22861 cggcgcgggc aatcgcttcc agccgtggat gcccttccag cgcaaagcgt ctaccgagta
    22921 caccctttgc cagaccgtcg atggcaagcg gaataaactg ccgcgaatcg taacgtagca
    22981 acgcagacgc atcgcactcc agcacctgac gtagcgtggt gatcaggcgc tgaaaacgat
    23041 cctgatgacc aatcccacgc tgcaattcga tggcgatatt cgccagcaca tcaacggaaa
    23101 aactcatctt tgcctcactg tcaatttgac tatagatatt gtcatatcga ccatttgatt
    23161 gatagtcatt ttgactactc attaatgagc ataattttat ttatatagta aaaacaatca
    23221 gataaaaact ggcacgtaat ctgcaattag caagacatct ttttagaaca cgctgaataa
    23281 attgaggttg ctatgtctat tgtggtgaaa aataacattc attgggttgg tcaacgtgac
    23341 tgggaagtgc gtgattttca cggtacggaa tataaaacgc tgcgcggcag cagttacaac
    23401 agctacctca tccgcgaaga aaaaaacgtg ctgatcgaca ccgtcgacca taaattcagc
    23461 cgcgaatttg tgcagaacct gcgtaatgaa atcgatctgg cggatatcga ttacatcgtg
    23521 attaaccatg cagaagagga ccacgctggg gcgctgaccg aactgatggc gcaaattccc
    23581 gatacgccga tttactgtac tgccaacgct atcgactcga taaatggtca tcaccatcat
    23641 ccggagtgga attttaatgt ggtgaaaact ggtgacacgc tggatatcgg caacggcaaa
    23701 cagctcattt ttgtcgaaac gccaatgctg cactggccgg acagcatgat gacttacctg
    23761 acaggcgacg cggtgctgtt cagtaacgat gctttcggtc agcactactg cgacgagcat
    23821 ctgttcaacg atgaagtgga tcagacggag cttttcgagc agtgccagcg ttactacgcc
    23881 aatatcctga cgccgttcag ccgcctggta acaccgaaaa ttaccgagat cctgggcttt
    23941 aacttaccag tcgatatgat agcgacctct cacggcgtgg tatggcgcga taacccgacg
    24001 caaattgtcg agctgtacct gaaatgggcg gctgattatc aggaagacag aatcaccatt
    24061 ttctacgaca ccatgtcgaa taacacccgc atgatggctg acgctatcgc ccaggggatt
    24121 gcggaaaccg acccacgcgt ggcggtgaaa attttcaacg tcgcccgaag cgataaaaac
    24181 gaaatcctga ccaatgtctt ccgctcaaaa ggcgtgctgg tcggcacttc gacgatgaat
    24241 aacgtgatga tgccgaaaat cgccgggctg gtggaggaga tgactggttt acgcttccgt
    24301 aacaaacgcg ccagtgcttt cggctctcac ggctggagcg gcggtgcggt ggatcgtctt
    24361 tccacgcgcc tgcaggatgc gggtttcgaa atgtcgctta gcctgaaagc gaaatggcga
    24421 ccagaccagg acgctctgga gttatgccgt gaacacggtc gcgaaatcgc ccgtcagtgg
    24481 gcgctcgagc cgctgccgca gagcacggtg aataaggtag tcaaagaaga aacctctgcc
    24541 accacgacgg ctgacctcgg cccacggatg cagtgcagcg tctgccagtg gatttacgat
    24601 ccggcaaaag gcgagccaat gcaggacgtt gcgccaggaa cgccgtggag tgaagtcccg
    24661 gataacttcc tctgcccgga atgctccctc ggcaaagacg tctttgaaga actggcatcg
    24721 gaggcaaaat gagtaacggc attgtgatca tcggttcggg cttcgccgcc cgccaactgg
    24781 tgaaaaatat tcgcaaacag gacgccacta ttccattaac cctgattgcc gccgacagca
    24841 tggatgagta caacaaacct gacctcagcc atgttatcag tcaggggcaa cgtgccgatg
    24901 accttacccg ccagacggcg ggtgaatttg ccgagcagtt taatctgcac ctgtttccac
    24961 aaacctgggt gacggatatc gatgccgaag cccgtgtggt aaaaagccag aataatcagt
    25021 ggcaatacga caagctagta ctggcaaccg gtgccagtgc ctttgtcccg cctgtgcctg
    25081 ggcgtgagtt aatgctgacg ttaaatagtc agcaagagta tcgcgcctgt gaaacgcaac
    25141 tgcgggatgc ccgacgcgtg ttgattgttg gcggtggttt gattggtagc gaactggcga
    25201 tggatttttg tcgtgcaggc aaagcggtca cgctaatcga caacgctgcc agtattctgg
    25261 cgtcgttaat gccaccggaa gtaagcagcc gcttgcagca tcggttgacg gaaatgggcg
    25321 ttcatctgct gttgaaatct cagttacagg ggctggaaaa aacggattct ggcattctgg
    25381 caacgctgga ccaccagcgt agtatcgaag tggatgcggt aattgccgcc accggactgc
    25441 gcccggaaac agccctggca cgacgcgccg ggctgacgat taatcgcggc gtttgcgtcg
    25501 atagttatct gcaaaccagt aatgacgata tttatgcgct gggcgattac gcggaaatca
    25561 acggtcaggt actgccattc ctgcagccga ttcaacttag cgcgatggtg ctggcaaaaa
    25621 atcttctcgg caataacacg ccgctgaaac taccgacgat gctggtgaaa atcaaaacgc
    25681 cggaattacc gctgcatctg gcaggcgaaa cccagcgtca ggatttacgc tggcaaatta
    25741 ataccgaacg ccagggaatg gtggctcgcg gtgttgacga tgctgaccag cttcgcgcct
    25801 ttgtggtcag tgaggatcgg atgaaagagg catttggatt gttgaaaaca ttgccgatgt
    25861 aggtgggcta ctgtgcctaa aatgtcggat gcgacgctag cgcgtcttat ccgacctacg
    25921 gggacgcatg tgtaggccgg ataaggcgtt tacgccgcat ccggcaatgg tgtccaaatg
    25981 caacacgttt tatccgttct ggacttcacc cgctaaccaa cgcgccgcag caataacccc
    26041 ctgccccaga gacaaaccgc catcacccgc cggtaaactc tgaggaaaga gcaatgtgaa
    26101 atcagcgaga taatgcgaca gacgtgcacg cagcaaacgg ttatgaataa ccccgccgct
    26161 aaataccagc gtagtgatac cacgcatcgt ggcctgctca cgcatcaacg cggcaaaacc
    26221 ctgcgccagc gcatcatgaa acgcccacgc gcgttgatta acctgtgcct gccagttcag
    26281 ccactgctgc cagaaagcgg cgagatccag ttgattgtcc accagcggca tcgtcaccgg
    26341 atgcgtcact ccgtggcatg aggctgcgag cgcctccaga gcacaagccg cttcaccttc
    26401 ataacttaac gtggctggcg cacagcccag tgccgccgcc actgcatcga acaaccgccc
    26461 acacgatgac gccagcggcg cgttaattcc acgctcaatg gcccgcgcca gcacgctcca
    26521 gttttgctgt tgcacacttg ctgtttcagg gtaattctgc cactccggca caaagcgcag
    26581 gcactgcgcc agcaggtttc gccacggctg cttcgctgcc aaatcgccac ccggaagcgc
    26641 cactgcaggc aagccgccca ggtgctcaca ttcgcgatag ttcacccgca ggcactcgcc
    26701 gccccacaaa gcgccgttct tccccatacc gataccgtcg agcgtcaaag caatgacatc
    26761 accgccatcc agcggccact gatgctctgc cagacacgcc gctgcatggg catgatgatg
    26821 cagtaccgtt tgcgtcggca gattcatttc acgcgcccac tggctggaga catagcccgg
    26881 atgcgcgtca tgcacaacgt atttcggggt aaaatcgtag atgttttgca tcaggcgtaa
    26941 cgcttcgcgc cactgcatct ggatgccatc gtcacttaaa tcgcccagat gctgactcaa
    27001 caccgcttgt tcaccgcgca ccaggcagaa ggtatttttc agatccgctc cgagacacag
    27061 cacaggcgga acatttttaa agcccggagg caaagccagc gcatccggca catacccccg
    27121 cgaacggcgc agcatttcgc cgctttcgcg caccaccgaa tcatccatcc gctgcacgat
    27181 gtcgcggtta tgtatcaaga atccgtcggc aatgccctgc aaatccgcca gcgcctgttc
    27241 gttgctgata gctggtggtt taccgctcag gttgccggag gtcatcacca gcgggcattg
    27301 cagttcctgt aacagcaaat gctggagcgg gttcgcaggc aacattaccc cgacttcgtt
    27361 aaggtcaggg gcgatatcat cacaaagctc aggaacgtat tttttatcca ccagcacaat
    27421 cggcgcggcg ggcgtggtaa gcaactggcg cgcagcgtct ggtaaaccgt cagccactgg
    27481 caacatgacc gccagcggtt tcgccgggcg atgtttgcgc gcccgaagtg tcgccaccgc
    27541 gttactgtta cgtgcatcgc aggcaagatg aaatccgcca atccctttga tggcgacaat
    27601 gttgcccatt tttaactgtg cgatagccgc ctgtaatgcc gcctcttgtt ctgcatgttc
    27661 accatgactt acccattcaa gatgcgggcc acactctggg caggccaccg gctgggcgtg
    27721 gaagcgacga tcgagcgggt cgcggtactc tttgtcacaa gccggacaca acggaaacgc
    27781 cgccatcacg gtaaacgggc ggtcgtaagg catggcgcga ataatggtga aacgcgggcc
    27841 gcagtgggta cagttgataa acggataacg ataacgccgt tcgcctgggg tattcatttc
    27901 ggcaaggcaa gcagggcaag tagcggcatc cgggacaatt tgcgtattca tggcacctcc
    27961 cgcgctctgg cggatggtga actcagtggg cagttgtgac cagatgtacg gctcacgctc
    28021 gacgctatca atacgcgcca gcggcgggca gtgctgatgc aattgaacaa gaaacgtttc
    28081 cgggtcttcc cgcagccgga cttctacgcc atcgccgtca ttacagacat cgccgtgaag
    28141 atttaattgc tgtgccagct gccagacaaa cggacgaaaa ccgacgccct gcactttgcc
    28201 acgaatacgc agttggacac cgcaagatgt gttttttgcc attgagttat tcccgccatc
    28261 atgaattgcg taacccgccc agccggacac gacagcgtcg catccggcag tcacaggtcg
    28321 gcgataccgc ccgctccgta ttctacgaat atttccggga attcctttga tgccagaaca
    28381 gttctgtaag atttttagaa catcagcgcc gtacggcggc gtttttctgc actcagttgt
    28441 tcaagtttat tacgatcgac acaaatcagc gcatgagtcg ggcaagccgc catacacgcc
    28501 gggccgtctt cacgatggtt gcacaggtca catttattgg cttcggcttt gtcagcccgt
    28561 acattcagcc ccgcgccgct gttgcgaatc accggacgta ccaccacttc catcgcgcca
    28621 tacgggcaag ccacaacgca ggttttgcaa ccaatgcaac gttcctgcat cacatgaaca
    28681 aaccctttat cacggctgat agcaccattc gggcagacgt tagcgcacgg tgcatcttca
    28741 cactgacggc aaactgtcgc cgtggaaatg ttcacacctt taatgacatg gatacgcggt
    28801 aaaaatgttt ccggggtcag cgatgcacag tcctgatttt cctgatgaga aaccacgcac
    28861 gccacttcac aggtacggca accaatacat ttactcgcgt cagcaatgat gaaacggttc
    28921 atcaaattct ccagcaatga cagttaatgc gccgatacat tcacaaatca tgccagtttt
    28981 taattcactg ttatttaagg aaattaattt ctgtaatgca ggaaaaaaga tgtcatcgac
    29041 actagtgacg atgacatgtg atgacaatgt ttatcgcgaa agagcaatga gtgagtcgcg
    29101 gtggatcagt tttccgctga aggttttcgg cggtgagaaa tccccgccat cgagcataaa
    29161 aatcagccgt ccaataattt cctgaatcat ctcagtcacc ggaattttta cgctggagag
    29221 cgccggaacg atataggggg caattgcgat atcatcgaat ccgataactg acacctgctc
    29281 tggcaccgct acgccgcgct cgtgcaacgc tttcatcgca cctatcgcca tatcgtcgtt
    29341 actggcaact aacgcgctaa atttagcccc acgttcgagc aacgtttcta ccccttcggc
    29401 cccgctggcg ggcgtccatt taccgttagc gataagtttt tcattgagcg caataccatg
    29461 ctgcgccagc gcgtctttat acccagcaag acgttcaatg ctggtggggg aatccatcga
    29521 gccggtaagg aaagcaatct cctgatgtcc ggcgtttatc aactctgcca cggcattaaa
    29581 gctggtctgt ttatgatcgc accagacgct atggctgctg tttttgcgca ggcggcgatt
    29641 aagcaccatt atcggctgac tgtgcgcgtc aatgatgtca tcgatctcat ccacgcttaa
    29701 aaaacgcggg taaatcataa tggcgtcgca gcgcaaatcc agcagatact gaatcgcctg
    29761 gcgctcttct tcggcgctgt gtttaccatc tgccaatagc aactgccgcc ctttctcttc
    29821 cgccattcgc gcggcatgaa agagtaattc actaaaataa atgccgtggt aaagcgtgtt
    29881 ggtcactacc agccccagcg tctgagtact cttcgccgac agattgcgcg ccagcaagtt
    29941 tgggcggtaa ccgctctctt ctaccgcctg aaacacgcga tctttagtct cctggctgac
    30001 gtagccatta cctgaaagca cgcgggaaac ggtcgctttt gaaaccccgg cgcgcttcgc
    30061 cacttccagc atcgtcgtca tcattttcat ccctttacac gcaatcaacg cagtgtactg
    30121 caccgtttgc cgattgtcct tgcgcaatcg gcgggaaaaa tattcaggtg accggtttca
    30181 caaatataaa aaatgaataa ttaactctct tgcttattta gtgacaagta ttcatgattt
    30241 tgtgaaaccg gtttcctaat tccgtttcag catcggcatt tttccgttac gtcgactgat
    30301 aacaactaca tctaccctac tgataacagg ataaaatccg atggccaaaa attatgcggc
    30361 gctggcacgc tcggtgatag cggcactggg cggcgttgat aacatctcgg cggtcacgca
    30421 ctgtatgacg cgtttgcgct ttgttatcaa agatgaccag cttatcgaca gcccgacgtt
    30481 aaaaaccatc cccggcgtgc tcggcgtggt acgtagtgac aaccagtgtc aggtgattat
    30541 cggcaatacc gtttcacaag cctttcagga agtcgtcagc ctgctgccgg gagatatgca
    30601 gcccgcacag cccgtgggta aacccaaact cacgctgcgt cgcattggtg cggggatcct
    30661 cgatgcgctg atcggcacca tgtcaccgct gatcccggcg attatcggcg gatcgatggt
    30721 caaactgctg gcgatgatcc tcgagatgag cggcgtgctg acaaaaggat cgccgacctt
    30781 aaccattctg aatgtgattg gtgacggtgc tttcttcttc ctgccgctga tggtcgcggc
    30841 atctgccgcc atcaaattta aaaccaatat gtcgctggcg attgccatcg cgggtgtgct
    30901 ggtacatccg agttttattg aactgatggc gaaagcggcc cagggtgaac atgtcgaatt
    30961 tgccctgatt ccggtcaccg cggtgaaata cacctacaca gcgatcccgg cgctggtgat
    31021 gacttggtgc ctgtcatata tcgaacgctg ggtggatcgc attacaccgg cggtgaccaa
    31081 aaacttcctc aagccaatgc tgattgtgtt gattgccgca ccgctggcaa tcctgctgat
    31141 tggcccgatt ggtatctgga tcggtagcgc catttcggcg ctggtttaca ccattcatgg
    31201 ttatctgggc tggctttcag tcgccattat gggcgcgctg tggcctctgc tggtaatgac
    31261 cgggatgcac cgcgtcttta cgccaaccat cattcagacc attgccgaaa ccggcaaaga
    31321 agggatggtc atgccgtcag agatcggcgc taacctgtcg ctgggcggtt catcactggc
    31381 ggtggcgtgg aaaacgaaaa acccggaact gcgccagacg gcgctggctg cggcggcatc
    31441 agccattatg gcggggattt ccgaaccggc gttatacggc gtggcgatcc gcctgaaacg
    31501 tccgcttatc gccagtctta tcagcggttt tatttgcggc gcggttgccg gtatggcggg
    31561 gcttgccagc cactcaatgg cagcgccggg gctatttacc agcgtgcaat tcttcgatcc
    31621 ggcgaatcca atgagcatcg tctgggtgtt cgcggtcatg gcgctggcgg tggtgctgtc
    31681 gtttatcctc acactgttgc tcggctttga ggatattcct gttgaggaag cggctgccta
    31741 ggcgcgaaag catcagagcg tacaaccgac cgtcgccaaa gaagtaagtc ttaattgagg
    31801 atgaaaatgt cagtatttcc agaaggtttt ttatggggcg gcgcgcttgc cgccaaccaa
    31861 tctgaaggtg cgttccgtga aggcggaaaa gggctgacca ccgtcgatat gatcccacac
    31921 ggcgagcatc gaatggcggt gaaactgggg ctggaaaaac gttttcagtt gcgcgatgac
    31981 gagttttatc ccagccatga ggcgacggat ttttatcatc gttataaaga agatatcgcc
    32041 ctgatggcag agatgggatt caaggttttc cgtacctcaa ttgcctggag ccgtctcttt
    32101 ccgcagggcg atgaaatcac gcccaatcag cagggcattg ctttttatcg ttctgtcttt
    32161 gaagagtgta aaaagtacgg tatcgaaccg ctggtcacgt tgtgccactt cgatgtgccg
    32221 atgcatctgg tcaccgaata tggctcctgg cgtaaccgca agctggtgga gtttttcagc
    32281 cgctacgcca gaacctgctt tgaagcattt gatggtctgg tgaaatactg gctaaccttc
    32341 aatgaaatca acattatgtt gcatagcccg ttctccggcg cgggtctggt gtttgaagaa
    32401 ggtgaaaatc aggatcaggt gaaatatcag gccgcgcatc accagctggt tgccagtgcg
    32461 ctagccgcca aaatcgccca tgaggttaac ccgcaaaatc aggtgggctg tatgctggcg
    32521 ggcggcaact tctaccctta cagctgcaaa ccggaagatg tctgggcggc gctggagaaa
    32581 gatcgggaaa acctgttttt tatcgatgtg caggcgcgcg gcgcgtatcc ggcttactct
    32641 gcccgcgtat ttcgcgaaaa aggggtaacc atagataaag cgctgggcga tgatgagatc
    32701 ctgaaaaaca ccgtcgattt tgtctctttc agctattacg cctcgcgctg cgcctcggcg
    32761 gagatgaacg ccaacaacag cagtgcggcg aacgtggtga aatcgctgcg taacccgtat
    32821 ctgcaagtga gcgactgggg ctggggaatt gatccactcg gtctgcgtat caccatgaat
    32881 atgatgtacg atcgttatca gaagccgctg tttctggtgg aaaacggcct cggcgcaaaa
    32941 gatgaacttg ctgccaatgg cgagattaac gatgactatc gcatcagcta tttacgcgaa
    33001 catatccgcg caatgggcga agcgattgca gatggcattc cgctgatggg ctacaccaca
    33061 tggggctgta ttgatttagt ttccgcctct acgggtgaaa tgagcaaacg ctacggtttt
    33121 gtctacgtag accgtgacga cgcaggcaac ggcacgctga cgcgcacacg taagaaatcg
    33181 ttctggtggt ataaaaaagt gattgccagt aatggggaag atttagagta agtaacagtg
    33241 ccggatgcgg cgtgaacgcc ttatccggcc tacatgtcgc acgaaccagg aaggcccgat
    33301 aagcgcagcg catcgggcaa tttagcattt ggcatcagag ctggttcacc ccatcaagaa
    33361 catccctgtc ctgattcctt aatgaaaaac tactcttctt ccaccgctaa ctgcgcgaag
    33421 ccgccattcc cttcccagcc ttccagtcgt tgataaacgg tttctaccgc atctttaatc
    33481 ggctgggtca tcgggtagta aaagccgacg atatccggct gtatgccgag gaaaatcact
    33541 tcgccaatat cttctttcaa ctggtcgata agatagttca gaggcatgtt atgggtagtc
    33601 atcataaaca tctcggcgat atcatccggg tcgatgatgc ggatctcgcc ggggtttagc
    33661 cccatatccg tggcgtcgac aatcagtaac cgcgtagggc gcagttcacg gatggcgacg
    33721 atgtcgtttt ccggtgcact accgccgtca atcaccaccc agttaccttt cggcgcggcg
    33781 gcgcactttt ccgccagcag cggacctgcg ccatcatcgc ccatcatgct attgccaaca
    33841 cagagtaaaa cgtcagtcac gcaatctcct caccatcaaa tagatggcgt tttcctgatg
    33901 aatatcatgc agcatactta acagcattgt actccattcc tgctgatgcg aagtttgcgc
    33961 tgcccgggct ttatcgaatg cgttggccag catcggcaca tggttaatgt cgatgacgat
    34021 ctcaccgtac ttcggtacgc cttccatttt gcggcgggct tcactgcccg cctccagagt
    34081 ggcaatccat gccagatatt catcccacgg gcaggtgagc gccgcttcca ggcaatcgat
    34141 aaccccaagg tggtgaccaa tcgccaggct gtaatagacc acctgctgcg cctcggcggg
    34201 cgtggcatcg ttctcatcaa taaatttacg gctcagttga ctgaacacca ccttttcact
    34261 catcggatac gcacctcttc tacaacatga ttcagatggc tgacaatctc gttcagacgc
    34321 ggatcgtttt ccgcttccag ccagcgtgca acctgttctt cgccctgccc taactgtgtc
    34381 aggaagtcat cggcaatctg acgaccgtaa cgataacccg ccaggcggcg tgcttcgcga
    34441 tccactttca cgcgcagcgg ctgcaccata tcgccatgca ggatctccgc cggttgttca
    34501 tccagttcac ccggcccacg ggcgtgaatt ttctgctcca gcaggccgag cgccattgca
    34561 aagccgtaca gcgtggcggc aggcgttggc gggcagccag ggatataaac atccacaggg
    34621 acaattttat ccgtaccgcc ccacacgcag cgcaggggat cgcattgcac gggtgaccgc
    34681 gccggtaaac agtaaaatat ccgcatgacg cggtgaagga acgactttaa tgccgaagcg
    34741 ttctgcatca aacagcggcg ataaagtggc gaaaatttcg atttcgcagc cgttgcagcc
    34801 gccgcagtcc acgcggtaaa cataggcaga acgtttgatt tttttcagta acgacgcctt
    34861 catgctggcg atggattcat ccaccgtcat cgggaccgga atgccgttgg cgtcacgggg
    34921 gcctaataaa ttgctcatca gatggcctct ttcatatggc gagtcagttc aatacggtcg
    34981 gacggcacct ggcatttctg gcgcttacat tccgggcaag tctcaaagct ttcgcggtgg
    35041 ttttccgcgc ggctgtcgcc gttgtgctta agcagcgcaa tggcgtagtc gatctctttc
    35101 tggacggcga aaggatgatt gcagacgcga cagttgcaca gcgcgaagcg agactgttgc
    35161 aggaagtctt ctttcttcca caccgccagt tcgtactctt gcgacagctt aatcgccgcc
    35221 gtcgggcaaa cttcttcgca gcgtccacag aagatgcagc gcccgagatt aaactcccag
    35281 gccagctctc ctgtggcgag gtcagtttca accgttaagg cgtttgacgg gcaggcattg
    35341 acgcaggccg cgcagccgat gcactgctgc gggttctgct ctggcttacc acggaagttt
    35401 ttatcaaccg caatcggctc cagcggataa gacgaggtcg ccgtgccggt tttgataact
    35461 tttttgataa aggtaaacat ggcgattcct tatttcagcg gcgagttttt acgctcaatg
    35521 ctgtagcgct cgagttcttt gtacggcacc actttgctct tcttcttacg tacatcgacc
    35581 acagtcatgc ggtcggtaca ggagtagcaa gggtccaggc taccgataat cagcggcgca
    35641 tcggaaacag tgttgccacg cagcatgtag cgcagggtcg gccagttcgc gtaggtcgcg
    35701 gcacggcagc gccagcggta cagcttctgg ttgtcgccag tcatgctcca gtggatatca
    35761 tcaccgcgcg gcgcttcggc aaagcccagc gcgaaacggt gcggaatgta ggtaaagcct
    35821 tccaccatca gcgggccacc cggcaggtta tccagaccgt agtcgatcat gttcagcgcg
    35881 gtatagactt cgttgatacg cactttcaga cgcgaaataa cgtcgcagcc ctgctcgctg
    35941 tggacttcca ttggcagcag gccataacca acaaacgggt gatcagcgcg ggtatcgcga
    36001 gcgtgtccgc tggcgcggac catcgggcca acgttactga aatcgcgggc aatttccggg
    36061 tccagacgac caatgccgat ggtgcgctgt tccatgttcg gtgtgctcag cagcacatcc
    36121 accagctcct gcacttcacg acgcatctgt tgcgccagct ggcgggtctg gatcatgtca
    36181 tctttcaaca gatcgcgacg aatcccgccg atcaggttca ggccgtaggt tttacgcgca
    36241 ccggtgagga tctcggccat tttcatggag gtttcacgca cgcggaagaa ctgcataaag
    36301 ccggagtcga agccggtaaa gtggcaggcg aggccgaggt tgagcagatg cgagtgcagg
    36361 cgttccacct ccagcagaat ggcgcggatc atctgcgcac gttctggcac ctgaataccc
    36421 atcgcgtttt ccaccgacgt ggtgtaggcg gtgctgtggg cgaagccgca gatcccgcac
    36481 acacggtcag agaggaaggt cacttcgtta taacccatgc gggtttccgc cagtttttcc
    36541 ataccgcgat ggacatagaa caagcggtag tctgcgtcga taatgttttc gccatcgacg
    36601 aacagacgga agtggcccgg ttcgtcagaa gtgacgtgca gcggaccaat cggcacgacg
    36661 ttgtttttct tgtcgcccag ttcgttgatg aactcgtagg tttcagcatc ggtggtcggt
    36721 gccggacgct gacgataatc catgctgtct ttacgcagcg gataaagttc atccggccag
    36781 tcatccggca gcaccagacg gcgttcatcc ggcagaccaa ccggaatcaa accgtacata
    36841 tcgcgcactt cgcgctcgcc ccacaccgcc gccggaacgc gcggcgtcac ggacggatac
    36901 tccggtttgt tggcatcaac ttcgacgcga accgttaccc agcacttagt ccctttctcc
    36961 atcgacagca cgtaataaac ggcgtaatga ccattcagtt tgcgttcgtc gttaccaaaa
    37021 agcaccgaca gccagccccc ctgcttgtag tagagaaact ccaccacttc cggcagatag
    37081 ttcaccttta cggtgatagt cagctgatct ttggtctgcc aggcgtggtc cagcacgacg
    37141 cccggaaatg cctcattcag cgcggcgaga taatgttgac ctaatttttc ttcagacatg
    37201 ctcaaactct ctttaatcac gccgccagca aggagacgaa cgctaaaaat gcaaagccaa
    37261 acccagccca agtaatgcgc ggagtaatat caagacgcag acgggccatg ctgttttcga
    37321 acagcgcgat aaccaggacg ccgaccacca gttttacgat ggcaatcacc agcgccagca
    37381 gcagtccacc ggcggtgaag gtttccattt gtccccacgg aataaacacc ccgacgaaca
    37441 tctgcaacac caccagctgt ttcaggctga taccccattt catgacgcca aagccgctgc
    37501 cgctatactc agagagcgga ccttcctgca actcctgctc ggcttccgcc aggtcgaacg
    37561 gcagtttgcc catttcgata aaagtggcga acgcacaggt gcagagcgcc agcaccagcg
    37621 ggatgctttg gctcagcggc cagtgataaa cggtgtcggt aatgttgctg atgttggtgg
    37681 aaccggcaac ctgtgcggca acccacagac caagcagcaa catcggttcg accagcacgc
    37741 caagcatcgc ttcacggctc gcaccgatag cggtaaacgg gctaccggta tccagaccgg
    37801 aaatggcaaa gaagaaacgc gcgatggcga agagatacag taaggtgatc aaatcgccca
    37861 gttgcggcag cggagaaccg acggtcacca ccggcagcgc agtagcgata gtcagcatga
    37921 cgcccaccat cacatacggc gtcaggcgga acacccagcc agaggcatcc gggccaacgc
    37981 tctggcggcc cagcagtttg ataatgtcgc gatactcctg caacacgccc ggcccgcgac
    38041 ggttatgcag acgggcgcgc gccacgcggg taataccgga gagcagcggc gcaacggcaa
    38101 ataacaccag cgcctgaatt aacggatata aaacactcat tctcaggctc ctcgtgaaac
    38161 aataatcacc accagtaccg ccagttcaac cagcgccatc cggcggaaca gcaacgcact
    38221 accttcgcac tgccagcccg gcaccagcga caccggattc agccatttgc gcagtttcag
    38281 cactggcgca aacgcctgtt taaccggcat ggcaaaaccg tgagcggtaa tcaccattga
    38341 tttttcatgg tcgtagccgc acacccaggc cgcaccgcgg gaacgtgacg gcaggcggtc
    38401 gcctttgcaa atcgccataa tgatgaatgg cagcagagag catcggcagc agccacggcg
    38461 cagcaacacc gccaattacg cagcaaatcg ccagtgccac tacgcttacg ctcatcagga
    38521 gcggcgcaca ggtggcgttt tcggcttctt tggtacgcgg cgcgccgagg aacgtgacgc
    38581 catagacttt cgccatacac atcaccgcca gcgcaccggt aattgccaga cccacagcga
    38641 gcagcggccc cagcagacgg gcaacaaacg cgccactatt gctcagtttg aaaaaggatt
    38701 gatagataac ccattccccg gcaaacccgt tcagcggcgg cagcgcagcc attgccatca
    38761 acccgactaa catggcgatg gagataaccg gcattttctt gccaatacca ccgagttttt
    38821 cgatatcgcg atgaccggta cggaaccaga cgctccccgc cccgaggaac agtacgcttt
    38881 tgaacaggct atggttaagc agatggtaca gaccaccgac caggccaaga gcaatcagcg
    38941 ccggttgttc gagcgcgata cccgttacgc cagcgcccag ccccagcagg ataatgccga
    39001 tattttccag ggtgtggtaa gccagcaggc gctggatgtt gtgctccatc agcgcataca
    39061 gaccaccgac aaacgcggtg atcatgccga gcaccagcag cacgatcccc caccacagcg
    39121 gtgcattacc gcccagcagt gacagggtta aaatgcccag caggccaatt ttcatgacta
    39181 ccgtagaaaa caacgcggca gctggcgcag aggcgttagc atgtgcctgc ggcacccagc
    39241 cgtgcagcgg aataatcccg gcgagcaggc caaagccaat cacaccgagc agccagatat
    39301 cggaaccgag cggcagctgt tgcatacgca tatccagcag gcgcagatcc agcgtgccat
    39361 aacgctgcca cagcagccag caagcaatcg ccagcagcag agtgccaaga cgccccagcg
    39421 caaaccacag tttgccctct ttgctgttgc tggtgaggaa caccgcacac aaggccatga
    39481 cttcggccat taccacgaac atgccgaggt tgctggcgat gacggcgcag acggcggcag
    39541 ccatcaacat attgatctgc aagccgttgc acttcacctg cgcgtggcga tgccagtcaa
    39601 tgttgtagag gctgacaaac agaccgcaca gaccgagcgt aatcagccaa atcgcgttaa
    39661 gcggggagat ttgcacatcg tagcttacca gcgacagcgc accgctcacg ccaaccgcgc
    39721 cagtcagcac agtgaagccc gcggctgccg tatacaggct accaaccgcg ccgccaattc
    39781 cggctatcca gccacttagc gtcttttgaa aagaaaagag aaatgccaga acagcggcgg
    39841 cgacaaacca caccacgccg ctattgatca gggaaattgc gctcatttag cctctccact
    39901 ttgagcctgc tgaaacaagg tgagatcgcc aaagtccgta ttaaaagtca gctcacgctt
    39961 acgtttgctg acgcgggcga tatcggtgtt atccaccaga tgcagggctt tggtcgggca
    40021 catccgcacg caggccggac cttgttcatc aaagctacaa aggtcacatt tgacggcgat
    40081 cgcgcgaata cccggcaccc agtcaagcag cgtactgata cgcgccggag caggcggtgc
    40141 cggtggcgct ttcggggtat tggcatttgc aggaatatcc agcggacggc tgccggaaaa
    40201 ttcaattgcg ccaaacgggc aggcgatgcc gcacagcttg cagcttacgc acaggctttc
    40261 attcaactgc acggccccat caacgcgggt gatgacgtta accgggcaga ccaccgcgca
    40321 gggtgcatct tcacagtggt gacagagctg cggcgcagat tctttttcat tcagcatcac
    40381 tctcaggcgc ggcattgatt gcaggccgtg ctggcgatgc gtctctgaac aggctgcctc
    40441 acaagtgtgg cagccgatac agagcgtgga gtcagcaatt acaaaacgat tcaccaggca
    40501 ttcctcaggt gattgtcatt tttgacgaaa acatgccgat gaaatgtcat tttcgacact
    40561 catcgacacg cccatcccca aacaggcgta acgcctgcaa aacgggcaaa gcctcagctc
    40621 atgctgccgg gctttgtccc tttaccagtt ggcttaaatt caccggcaca ttgttttcaa
    40681 tggcggtgta taagctgtcg taaacgccag cgattttttc gagatagtgt tccagaacct
    40741 gttcgcgatc gcggatgttg accttgccat caatcatgcc gtcaatgctc agttgcgcct
    40801 gcgcaatccg ctgtttgtct tcgccctctt ttgtttcgac gtaatactcg atggtgtggc
    40861 tgttaaagcc atccgccagg gtgacgtaaa tacgaaaatg ttcaaaaagg acgaaacaga
    40921 gttctttgtc cggcgcgcag ctcatggcgt gatgcaggcg cgctttcgat aacgtgatcc
    40981 cctgaaccag cgaattgcag tagatgtgcc actggtcctg taggcgacga tgccgctgtg
    41041 cgatgtaatc ggctttctcg cttatttccc aaatagtcat tgtcaggtta cccgtttaac
    41101 agagatgcca gctttaagca ttttctgtgc caatttttaa tttattgtta ttaaaacgat
    41161 ttttaagcta aagatgaatt tcgtcgccgt gtcgacgtgt catttcgaca tcatcgacat
    41221 tattcacctc agggataatc aacactggcg caattattgc ttgtagctgg caatagttaa
    41281 tgggaggcga tatgcacgaa ataaccctct gccaatgggc actggaattg atcgaacagc
    41341 aggccgcaaa acacggcgca aaacgcgtaa ctggggtctg gctcaaaatt ggcgcatttt
    41401 cttgtgtcga aaccagctct cttgcctttt gttttgatct ggtttgccgc ggcagcgtgg
    41461 cggaaggttg taaactgcac ctcgaagaac aagaggtcga atgctggtgt gaaacatgcc
    41521 aacagtatgt gacgctattg acccagcgcg tccgccgctg tccacagtgt catggtgaca
    41581 tgctacagat tgtggcagac gacggtttac agattcggcg gatagaaata gaccaggagt
    41641 gagcgatgtg tacaacatgc ggttgcggtg aaggcaacct gtatatcgag ggtgatgaac
    41701 ataaccctca ttccgcgttt cgtagcgcgc catttgcccc ggcggcacgc ccgaagatga
    41761 aaatcaccgg cattaaagcg cctgaattta cccccagcca gactgaagaa ggcgacctgc
    41821 attacggtca tggcgaagcg ggcactcacg caccgggcat gagccagcgt cggatgctgg
    41881 aagtcgaaat tgacgtgctg gacaaaaaca accgtctggc tgaacgcaac cgcgcgcgct
    41941 ttgctgcccg caagcaactg gtgctcaacc tggtttccag cccaggttcc ggtaaaacca
    42001 ccctgctgac ggaaacccta atgcgcctga aagacagcgt tccgtgcgcg gttattgaag
    42061 gtgaccagca aaccgtgaac gatgccgcac gcattcgcgc taccggcaca ccagcgattc
    42121 aggtgaacac aggtaaaggc tgccatcttg acgcacagat gattgccgac gccgcaccgc
    42181 gtctgccact ggacgataac ggtattctgt ttatcgaaaa cgttggcaac ctcgtatgcc
    42241 cggccagctt cgatctcggt gaaaaacaca aagtggcggt gctttccgtt accgaaggtg
    42301 aagacaaacc gctgaaatat ccgcatatgt ttgccgccgc ctcgctgatg ctgctcaaca
    42361 aagttgacct gttgccgtat ctcaactttg acgttgagaa gtgcatcgcc tgcgcccgcg
    42421 aagtcaatcc agaaattgaa atcatcctta tttccgccac cagcggtgaa gggatggacc
    42481 agtggctgaa ctggctggag acacagcgat gtgcataggc gttcccggcc agatccgcac
    42541 cattgacggc aaccaggcaa aagtcgacgt ctgcggcatt cagcgcgatg tcgatttaac
    42601 gttagtcggc agctgcgatg aaaacggtca gccgcgcgtg ggccagtggg tactggtaca
    42661 cgttggcttt gccatgagcg taattactga agccgaagca cgcgacactc tcgacgcctt
    42721 acaaaacatg tttgacgttg agccggatgt cggcgcgctg ttgtatggcg aggaaaaata
    42781 atgcgttttg ttgatgaata tcgcgcgccg gaacaggtga tgcagttaat tgagcatctg
    42841 cgcgaacgtg cttcacatct ctcttacacc gccgaacgcc ctctgcggat tatggaagtg
    42901 tgcggtggtc atacccacgc tatttttaaa ttcggcctcg accagttact gcctgaaaac
    42961 gttgagttta tccacggtcc gggttgcccg gtgtgcgtac tgccgatggg tagaatcgac
    43021 acctgcgtgg agattgccag ccatccggaa gtcatcttct gtacctttgg cgacgccatg
    43081 cgcgtaccag ggaaacaggg atcgctgttg caggcaaaag cacgcggtgc cgatgtgcgc
    43141 atcgtttact cgccgatgga tgcgttgaaa ctggcgcagg agaatccaac ccgcaaagtg
    43201 gtgttcttcg gcttaggttt tgaaaccacc atgccgacca ccgccatcac tctgcaacag
    43261 gcgaaagcgc gtgatgtgca gaatttttac ttcttctgcc agcacattac gcttatcccg
    43321 acgctgcgca gtttgctgga acagccggat aacggtatcg acgcgttcct cgcgccgggc
    43381 cacgttagta tggttatcgg cactgatgcc tataatttta tcgccagcga ttttcatcgt
    43441 ccgctggtgg tcgctggttt cgaacccctt gatctactgc aaggcgtggt gatgctggtg
    43501 gagcagaaaa tagcggccca cagcaaggta gagaatcagt atcgtcgggt ggtaccggat
    43561 gccggtaacc tgctggcgca acaggcgatt gccgatgtgt tctgtgtcaa cggcgacagc
    43621 gaatggcgcg gcttaggcgt gattgaatct tctggcgtgc acctgacgcc ggattatcaa
    43681 cgattcgatg ccgaagcaca tttccgcccg gcaccgcagc aggtctgcga tgacccgcgc
    43741 gcgcgttgtg gtgaggtatt aacgggcaaa tgtaagccgc atcaatgccc gctgtttggt
    43801 aacacctgta atcctcaaac cgcatttggt gcactgatgg tctcctctga aggagcgtgc
    43861 gccgcgtggt atcagtatcg tcagcaggag agtgaagcgt gaataatatc caactcgccc
    43921 acggcagcgg cggccaggcg atgcagcaat taatcaacag cctgtttatg gaagcctttg
    43981 ccaacccgtg gctggcagag caggaagacc aggcacgtct tgatctggcg cagctggtag
    44041 cagaaggcga tcgtctggcg ttctccaccg acagttacgt cattgacccg ctgttctttc
    44101 ctggcggtaa tatcggcaag ctggcgattt gcggcaccgc gaatgacgtt gcggtcagtg
    44161 gcgctattcc gtgctatctc tcctgtggct ttatcctcga agaaggattg ccgatggaga
    44221 cactgaaagc cgtagtgacc agcatggcag aaaccgcccg cacggcaggc attgccatcg
    44281 ttactggcga tactaaagtg gtgcagcgcg gcgcggcaga taaactgttt atcaacaccg
    44341 ctggcatggg cgcaattccg gcgaatattc actggggcgc acagacgcta accgcaggcg
    44401 atgtattgct ggttagcggt acactcggcg accacggggc gactatcctt aacctgcgtg
    44461 aacaactggg gctggatggt gaactggtca gcgactgcgc ggtgctgacg ccgcttattc
    44521 agacgctgcg tgacattccc ggcgtgaaag cgctgcgtga tgccacccgt ggtggtgtaa
    44581 acgcggtggt tcatgagttc gcggcagcct gcggttgtgg tattgaaatt tctgaatcag
    44641 cactgccggt taaacctgct gtgcgcggcg tttgcgaact gctgggactg gacgccctta
    44701 actttgccaa cgaaggcaaa ctagtaatag ctgttgaacg caacgcagca gagcaagtgc
    44761 tggcagcgtt acattcccat ccactgggga aagacgcggc gctaattggt gaagtggtgg
    44821 aacgtaaagg tgttcgtctt gccggtctgt atggtgtgaa acgaaccctc gatttaccac
    44881 acgccgaacc gcttccgcgt atatgctaat aaaattctaa atctcctata gttagtcaat
    44941 gaccttttgc accgctttgc ggtgctttcc tggaagaaca aaatgtcata tacaccgatg
    45001 agtgatctcg gacagcaagg gttgttcgac atcactcgga cactattgca gcagcccgat
    45061 ctggcctcgc tgtgtgaggc tctttcgcaa ctggtaaagc gttctgcgct cgccgacaac
    45121 gcggctattg tgttgtggca agcgcagact caacgtgcgt cttattacgc atcgcgtgaa
    45181 aaagacaccc ccattaaata tgaagacgaa actgttctgg cacacggtcc ggtacgccgc
    45241 attttgtcgc gccctgatac gctgcattgc agttacgaag aattttgtga aacctggccg
    45301 cagctggtcg caggtgggct ataccccaaa tttggtcact attgcctgat gccactggcg
    45361 gcggaagggc atatttttgg tggctgtgaa tttattcgtt atgacgatcg tccctggagc
    45421 gaaaaagagt tcaatcgtct gcaaacattt acgcagatcg tttctgtcgt caccgaacaa
    45481 atccagagcc gcgtcgtcaa caatgtcgac tatgagttgt tatgccggga gcgcgataac
    45541 ttccgcatcc tggttgccat taccaacgcg gtgctttccc gcctggatat ggacgaactg
    45601 gtcagcgaag tcgccaaaga aatccattac tatttcgaca ttgacgatat cagtatcgtc
    45661 ttacgcagcc accgtaaaaa caaactcaac atctactcca ctcactatct tgataaacaa
    45721 catcccgccc acgaacagag cgaagtcgat gaagccggaa ccctcaccga acgcgtgttc
    45781 aaaagtaaag agatgctgct gatcaatctc cacgagcggg acgatttagc cccctatgaa
    45841 cgcatgttgt tcgacacctg ggcaaccaga ttcaaacctt gtgcctgtta ccgctgatgt
    45901 ctggcgacac catgctgggc gtgctgaaac tggcgcaatg cgaagagaaa gtgtttacca
    45961 ctaccaatct gaatttgctg cgccagattg ccgaacgtgt ggcaatcgct gtcgataacg
    46021 ccctcgccta tcaggaaatc catcgtctga aagaacggct ggttgatgaa aacctcgccc
    46081 tgaccgagca gctcaacaat gttgatagtg aatttggcga gattattggc cgcagcgaag
    46141 ccatgtacag cgtgcttaaa caagttgaaa tggtggcgca aagtgacagt accgtgctga
    46201 tcctcggtga aactggcacg ggtaaagagc tgattgcccg cgcgatccat aatctcagtg
    46261 ggcgtaataa tcgccgcatg gtcaaaatga actgcgcggc gatgcctgcc ggattgctgg
    46321 aaagcgatct gtttggtcat gagcgtgggg cttttaccgg tgccagcgcc cagcgcattg
    46381 gtcgttttga actggcggat aaaagctccc tgttcctcga cgaagtgggc gatatgccac
    46441 tggagttaca gccgaagttg ctgcgtgtat tgcaggaaca ggagtttgaa cgtctcggca
    46501 gcaacaaaat cattcagacg gacgtacgtt taattgccgc gactaaccgc gatctgaaaa
    46561 aaatggtcgc cgaccgagag ttccgtagcg atctctatta ccgcctgaac gtattcccga
    46621 ttcacctgcc gccactacgc gagcgtccgg aagatattcc gctgctggcg aaagccttta
    46681 ccttcaaaat tgcccgtcgt ctggggcgca atatcgacag cattccagcc gagacgctgc
    46741 gcaccttgag caacatggag tggccgggta acgtacgcga actggaaaac gtcattgagc
    46801 gcgcagtatt gctaacacgc ggcaacgtgc tgcagctgtc attgccagat attgctttac
    46861 cggagcctga aacgccgcct gccgcaacgg ttgtcgctca ggagggcgaa gatgaatatc
    46921 agttgattgt tcgcgtgctg aaagaaacca acggcgtggt tgccgggcct aaaggcgctg
    46981 cgcaacgtct ggggctgaaa cgcacgaccc tgctgtcacg gatgaagcgg ctgggaattg
    47041 ataaatcggc attgatttaa ctgcaaattg ccggacagat ctgcctgtcc ggcatactat
    47101 tcacgaggtt ttttcggacg atatttttcc ggcagttctg gcaccggacg cttgtcatcg
    47161 atgagatgac gcacggttaa gatcggatga cgccacagca ttctcggccc ggcccaacgc
    47221 ataatctgtt tcatctcttc acgctttgca ggctggtaac agtgcaccgg acactgctta
    47281 caggctggtt tctcttcgcc gaacacacat ttatccagcc gcttttgcgc gtaaacaaac
    47341 aacgcctcgt aatgctccgg ctccgctgac gcctgcgggc atttcgcttg ataaagatcg
    47401 atcatttttt taatcgtcag tttttcacga gagatacgct tgccggacat gctgcctcca
    47461 tactcttaag gtgtatttat attacaactt aatttgaaag gggactatgg ctctgaagga
    47521 ggaggtttat tcaaccgacg caattttgcg tacttgcttc ataagcatca cgcaaaagct
    47581 gcaaaacagc atctttcccg gaaccagcat caagaactcg ccgttcgctt cttcccctga
    47641 aatgattaac tccggtatca tgtgcgcctt atgtgattac aacgaaaata aaaaccatca
    47701 caccccattt aatatcaggg aaccggacat aaccccatga gtgcaataga aaatttcgac
    47761 gcccatacgc ccatgatgca gcagtatctc aggctgaaag cccagcatcc cgagatcctg
    47821 ctgttttacc ggatgggtga tttttatgaa ctgttttatg acgacgcaaa acgcgcgtcg
    47881 caactgctgg atatttcact gaccaaacgc ggtgcttcgg cgggagagcc gatcccgatg
    47941 gcggggattc cctaccatgc ggtggaaaac tatctcgcca aactggtgaa tcagggagag
    48001 tccgttgcca tctgcgaaca aattggcgat ccggcgacca gcaaaggtcc ggttgagcgc
    48061 aaagttgtgc gtatcgttac gccaggcacc atcagcgatg aagccctgtt acaggagcgt
    48121 caggacaacc tgctggcggc tatctggcag gacagcaaag gtttcggcta cgcgacgctg
    48181 gatatcagct ccgggcgttt tcgcctgagc gaaccggccg accgcgaaac gatggcggca
    48241 gagctgcaac gcactaatcc ggcggaactg ctgtatgcag aagatttcgc cgagatgtcg
    48301 ctgattgaag gccgtcgcgg cctgcgccgt cgcccgctgt gggagtttga aatcgacacc
    48361 gcgcgccagc agttgaatct gcaatttggc acccgcgatc tggtcggttt tggcgtcgag
    48421 aacgcgccgc gcggactttg tgctgccggt tgtctgttgc agtatgcgaa agatacccaa
    48481 cgcacgaccc tgccgcatat tcgttctatc accatggaac gtgagcagga cagcatcatt
    48541 atggatgccg cgacacgtcg taacctggaa attactcaga acctggcggg cggtgcggaa
    48601 aatacgctgg cttctgtgct cgactgcacc gtcacgccga tgggtagtcg tatgctgaaa
    48661 cgctggctgc atatgccagt gcgcgatacc cgcgtgttgc ttgagcgcca gcaaactatt
    48721 ggcgcattgc aggatttcac cgccgggcta cagccggtac tgcgtcaggt cggcgacctt
    48781 gaacgtattc tggctcgtct ggctttacga actgctcgcc cacgcgatct ggcccgtatg
    48841 cgccacgctt tccagcaact gccggagctg cgtgcacagt tagaaactgt cgatagtgca
    48901 ccggtacagg cgctacgtga gaagatgggc gagtttgccg agctgcgcga tctgctggag
    48961 cgagcaatca tcgacacacc gccggtgctg gtacgcgacg gtggtgttat cgcatcgggc
    49021 tataacgaag agctggatga gtggcgcgcg ctggctgacg gcgcgaccga ttatctggag
    49081 cgtctggaag tccgcgagcg tgaacgtacc ggcctggaca cgctgaaagt tggctttaat
    49141 gcggtgcacg gctactacat tcaaatcagc cgtgggcaaa gccatctggc acccatcaac
    49201 tacatgcgtc gccagacgct gaaaaacgcc gagcgctaca tcattccaga gctaaaagag
    49261 tacgaagata aagttctcac ctcaaaaggc aaagcactgg cactggaaaa acagctttat
    49321 gaagagctgt tcgacctgct gttgccgcat ctggaagcgt tgcaacagag cgcgagcgcg
    49381 ctggcggaac tcgacgtgct ggttaacctg gcggaacggg cctataccct gaactacacc
    49441 tgcccgacct tcattgataa accgggcatt cgcattaccg aaggtcgcca tccggtagtt
    49501 gaacaagtac tgaatgagcc atttatcgct aacccgctga atctgtcgcc gcagcgccgt
    49561 atgttgatta ttaccggccc gaacatgggc ggtaaaagta cctatatgcg ccagaccgca
    49621 ctgattgcgc tgatggccta catcggcagc tatgtaccgg cacaaaaagt cgagattgga
    49681 cctatcgatc gcatctttac ccgcgtaggc gcggcagatg acctggcttc cgggcgctca
    49741 acctttatgg tggagatgac tgaaaccgcc aatattttac ataacgccac cgaatacagt
    49801 ctggtgttaa tggatgagat cgggcgtgga acgtccacct acgatggtct gtcgctggcg
    49861 tgggcgtgcg cagaaaatct ggcgaataag attaaggcat tgacgctgtt tgccacccac
    49921 tatttcgagc tgacccagct accggagaaa atggaagacg tcgccaacgt gcatctcgat
    49981 gcgctggagc acggagacac cattgccttt atgcatagcg tgcaggatgg cgcggcgagc
    50041 aaaagctacg gcctggcggt tgcagctctg gcaggcgtgc caaaagaggt gattaagcgc
    50101 gcacggcaaa aactgcgtga gctggaaagc atttcgccga acgccgccgc tacgcaagtg
    50161 gatggtacgc aaatgtcttt gctgtcagta ccggaagaaa cctcgccagc ggtcgaagct
    50221 ctggaaaacc tggacccgga ttcactgact ccgcgtcagg cgctggaatg gatttatcgc
    50281 ttgaagagcc tggtgtaata acaattcccg atagtctttt gctatcggga atattaacga
    50341 caactgacga ataaaataaa aacaccctgt ataataggaa agcttatttt acagggtaaa
    50401 accatgccat ctacacgcta tcaaaaaatt aatgcccatc actatcgcca tatatgggtc
    50461 gttggtgata ttcatggtga ataatcaatt attacaatcc cgcttacatc aactctcttt
    50521 ttgccctgaa accgacttac ttatttctgt cggcgataat attgatcgtg ggccggagag
    50581 tcttgacgtc ctgcgcctgc taaaccagcc ctggtttatc tccgttaaag gcaaccacga
    50641 agcaatggcg ctggatgcgt tcgcgaccgg cgatggcaat atgtggcttg ccagcggtgg
    50701 tgactggttt ttcgatttaa atgattcaga gcaacaagag gcaatagatc tgttgctgaa
    50761 attccatcac cttccacata ttattgaaat cactaacgac ataataaaat atgtcatcgc
    50821 acatgcagat tatccgggtg atgaatatct ctttggcaaa gaaatagcgg agagcgaatt
    50881 actctggcct gtttatcgtg tgcagaaatc gcttaatggc gagttacaac aaataaacgg
    50941 cgctgattat tttatatttg gacatatgat gtttgataac attcagacgt tcgctaacca
    51001 gatttatatt gataccggat cgccgaaaag tgggcggctg tcattttata aaataaggta
    51061 gtctcatgct tcttctgtga agcatgagta accagatgtt attgcaggc
//
LOCUS       DAJVUN010000005        42851 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.005, whole genome shotgun sequence.
ACCESSION   DAJVUN010000005 DAJVUN010000000
VERSION     DAJVUN010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 42851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42851
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.005"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(208..930)
                     /gene="baeR"
                     /locus_tag="OQQ76_000228"
     CDS             complement(208..930)
                     /gene="baeR"
                     /locus_tag="OQQ76_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BaeR"
                     /protein_id="HCS1966844.1"
                     /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD
                     QVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI
                     GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD
                     LTPAEFRLLKTLSHEPGKVFSREHLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE
                     QSFIRAVYGVGYRWEADACRIV"
     gene            complement(927..2330)
                     /gene="baeS"
                     /locus_tag="OQQ76_000229"
     CDS             complement(927..2330)
                     /gene="baeS"
                     /locus_tag="OQQ76_000229"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     BaeS"
                     /protein_id="HCS1966845.1"
                     /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK
                     HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG
                     WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD
                     KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED
                     ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE
                     TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG
                     LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLQISAGQRDKTVRLTFAD
                     SAPGVSDDQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG
                     VSITVELPLERDLQREV"
     gene            complement(2327..3742)
                     /locus_tag="OQQ76_000230"
     CDS             complement(2327..3742)
                     /locus_tag="OQQ76_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1966846.1"
                     /translation="MTDLPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESP
                     LHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELL
                     LARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY
                     ASWHWIFLINIPVGIIGAIATLLLMPNYTMQTRRFDLSGFLLLAVGMAVLTLALDGSK
                     GTGLSPLTIAGLVAVGVVALVLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIG
                     SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT
                     LGLSLVTLLFMTTALLGWYYVLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS
                     LLSMIMQLSMSIGVTIAGLLLGLFGSQHVSVDSGTTQTVFMYTWLSMALIIALPAFIF
                     ARVPNDTHQNVAISRRKRSAQ"
     gene            complement(3743..6820)
                     /gene="mdtC"
                     /locus_tag="OQQ76_000231"
     CDS             complement(3743..6820)
                     /gene="mdtC"
                     /locus_tag="OQQ76_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtC"
                     /protein_id="HCS1966847.1"
                     /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV
                     IMVSASLPGASPETMASSVATPLERSLGRIVGVSEMTSSSSLGSTRIILQFDFDRDIN
                     GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFAST
                     QLAPTILQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG
                     ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN
                     AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV
                     EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL
                     TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL
                     LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML
                     VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQA
                     DQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQ
                     QIIDRLRAKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRK
                     KLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIY
                     QPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGL
                     SAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILI
                     IAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI
                     GIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFDALPLVLSG
                     GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE"
     gene            complement(6821..9943)
                     /gene="mdtB"
                     /locus_tag="OQQ76_000232"
     CDS             complement(6821..9943)
                     /gene="mdtB"
                     /locus_tag="OQQ76_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtB"
                     /protein_id="HCS1966848.1"
                     /translation="MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVS
                     ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITL
                     QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM
                     TQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT
                     GANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAE
                     NSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVEVTVLSDRTT
                     NIRASVDDTQCELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS
                     INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFS
                     LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQN
                     RFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQD
                     NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQ
                     INLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQAT
                     SLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNA
                     LYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALGTIRLTSSDGGVVPLSSIAKI
                     EQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGCT
                     LAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALMIAGS
                     ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT
                     LAALLGALPLMLSTGVGAELRRPLGIGMVGGLVVSQVLTLFTTPVIYLLFDRLALWTK
                     SRFACHEEEA"
     gene            complement(9943..11190)
                     /gene="mdtA"
                     /locus_tag="OQQ76_000233"
     CDS             complement(9943..11190)
                     /gene="mdtA"
                     /locus_tag="OQQ76_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter subunit MdtA"
                     /protein_id="HCS1966849.1"
                     /translation="MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSQSAAPGATKQAQ
                     QSPAGGRRGMRSGPLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLMALH
                     FQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKATLTNARRDLARYQQLAKTNLV
                     SRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQIS
                     SGDTTGIVVITQTHPIDLLFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTL
                     LSLDNQIDATTGTIKVKARFNNQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNE
                     GHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVE
                     AQSATTPEEKATSREYAKKGARS"
     gene            11469..11525
                     /locus_tag="OQQ76_000234"
     CDS             11469..11525
                     /locus_tag="OQQ76_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1966850.1"
                     /translation="MMKILIIVVLLVISYPAY"
     gene            11797..11853
                     /locus_tag="OQQ76_000235"
     CDS             11797..11853
                     /locus_tag="OQQ76_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1966851.1"
                     /translation="MMRLLIIVVLLVISWPAY"
     gene            12126..12185
                     /gene="ibsA"
                     /locus_tag="OQQ76_000236"
     CDS             12126..12185
                     /gene="ibsA"
                     /locus_tag="OQQ76_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsA"
                     /protein_id="HCS1966852.1"
                     /translation="MMKHVIILVILLVISFQAY"
     gene            12406..13065
                     /locus_tag="OQQ76_000237"
     CDS             12406..13065
                     /locus_tag="OQQ76_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HCS1966853.1"
                     /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMNGRPINELNAGL
                     VTFRDELLADSLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK
                     ALDMVEERKREYRANGISYYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIG
                     VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS
                     V"
     gene            13062..13823
                     /locus_tag="OQQ76_000238"
     CDS             13062..13823
                     /locus_tag="OQQ76_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HCS1966854.1"
                     /translation="MSWRLVYASAVGTSHISADLPCQDACQMQVAWLNDQQPLLVMFL
                     ADGAGSVSQGGEGAKLAVNEAMAFMVQKVQDGELGLNDVLATNMVLTIRQRLFAEAEA
                     KALAVRDFACTFLGLISSANGTLIMQIGDGGVVVDFGRGLELPLTPMVGEYANMTHFI
                     SDEDAVSRLETFTSTERAHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLAAATQE
                     QLDLLPELLKQFLSSPAVNERTDDDKTLALALWLP"
     gene            13820..15760
                     /gene="yegI"
                     /locus_tag="OQQ76_000239"
     CDS             13820..15760
                     /gene="yegI"
                     /locus_tag="OQQ76_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310906.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YegI"
                     /protein_id="HCS1966855.1"
                     /translation="MKPTLYTATGECVTPGRELGKGGEGAVYDINEFVDSVAKIYHTP
                     PPALKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYS
                     PAHRRQSYPHCAWDFLLYVARNIALSFATVHEHGHVVGDVNQNSFMVGRDSKVVLIDS
                     DSFQINANGTLHLCEVGVSHFTPPELQTLPSFVGFERTANHDNFGLALLIFHVLFGGR
                     HPYSGVPLISDAGNALETDIAHFRYAYASDNQRRGLKPPPRSIPLSMLPGDVEAMFQQ
                     AFTESGVATGRPTAKAWVAALDSLRQQLKKCTVSAMHVYPAHLTDCPWCTLDNQGVIY
                     FIDLGEEVITTGGDFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRREYI
                     ILIEIALSALSLLLCGLQAEPRYIILVPVLAAIWIIGSLTSKAYKAEVQQRREAFNRA
                     KMDYDHLVSQSQQLGGLEGFIAKRTMLEKMKDEILGLPEEEKRALAALHDTARERQKQ
                     KFLEGFFIDVASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVIDWK
                     ASCERRFVFRPNEAVTPAERQAVMAKMAAKRHRLELALTVGATELQRFRLHAPARTMP
                     LMEPLRQAAEKLAQAQADLSRC"
     gene            complement(15773..17125)
                     /gene="yegD"
                     /locus_tag="OQQ76_000240"
     CDS             complement(15773..17125)
                     /gene="yegD"
                     /locus_tag="OQQ76_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1966856.1"
                     /translation="MFIGFDYGTANCSVAIMRDGKPHLLKMENDSTLLPSMLCAPTRE
                     AVSEWLYRHHDVPADDDETQALLRRAIRYNHEEDIDVTAKSVQFGLSSLAQYIDDPEE
                     VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPETITQAVIGRPINF
                     QGLGGDEANTQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGG
                     GTTDCSLLLMGPQWRSRLDREASLLGHSGYRIGGNDLDIALAFKNLMPLLGMGGETEK
                     GIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKIWRQRLS
                     YRLVRSAEECKIALSSVAETRASLPFISDELATLISQQGLESALSQPLARILEQVQLA
                     LDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGIPIAGGDDFGSVTAGLARWAEVVFR
                     "
     gene            17259..18107
                     /gene="alkA"
                     /locus_tag="OQQ76_000241"
     CDS             17259..18107
                     /gene="alkA"
                     /locus_tag="OQQ76_000241"
                     /EC_number="3.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2"
                     /protein_id="HCS1966857.1"
                     /translation="MYTLNWQPPYDWSWMLGFLAARAVSGVETVADDYYARSLAVGEY
                     RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLLDLQCNPQIVNGALGKLGAAR
                     PGLRLPGSVDAFEQGVRAILGQLVSVAMAAKLTAKVVQLYGERLDDFPEYICFPTPQR
                     LAAADPQALKALGMPLKRAEALIHLANAALEGSLPMTIPGDVEQAMKTLQTFPGIGRW
                     TANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEG
                     WQPDEA"
     gene            complement(18216..21533)
                     /locus_tag="OQQ76_000242"
     CDS             complement(18216..21533)
                     /locus_tag="OQQ76_000242"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1966858.1"
                     /translation="MSKQSQHVLIALPHPLLHQVSLGLASFIFTLFSLELSQFGTQLA
                     PLWFPTSIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAV
                     VGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWV
                     LSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTF
                     IIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLI
                     LLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQSNKALCQF
                     LGYSQEELRGLTFQQLTWPKDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALL
                     AVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMEHITLANEAGGIGIWEWELKPN
                     IFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSCSPFKLEFRIT
                     VKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGE
                     AVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTS
                     RSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSA
                     SHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALL
                     RELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGR
                     VHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAA
                     MSLDEQWRMIKENQLMMLAHGVALPRIPEARNLWLISLKLWSCEGEIIDEQTFRRSFS
                     DPALSHALDRRVFHEFFQQAAKAVASKGISIALPLSVAGLSSATLVNDLLEQLENSPL
                     PPRLLHLIIPAEAILEHAESVQKLRLAGCRIVLNQVGRDLQIFNSLKANMADYLLLDG
                     ELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGDVIA
                     DAQPLDLLVNSSYFAIN"
     gene            21851..22492
                     /gene="udk"
                     /locus_tag="OQQ76_000243"
     CDS             21851..22492
                     /gene="udk"
                     /locus_tag="OQQ76_000243"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HCS1966859.1"
                     /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI
                     PEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR
                     MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS
                     MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE"
     gene            22584..23165
                     /gene="dcd"
                     /locus_tag="OQQ76_000244"
     CDS             22584..23165
                     /gene="dcd"
                     /locus_tag="OQQ76_000244"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004942378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HCS1966860.1"
                     /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF
                     RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD
                     LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF
                     EPLSGPAARPYNRREDAKYRNQQGAVASRIDKD"
     gene            23187..25040
                     /gene="asmA"
                     /locus_tag="OQQ76_000245"
     CDS             23187..25040
                     /gene="asmA"
                     /locus_tag="OQQ76_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane assembly protein AsmA"
                     /protein_id="HCS1966861.1"
                     /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSG
                     YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK
                     QVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ
                     HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA
                     AIEQINWQLQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTL
                     TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ
                     GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD
                     ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG
                     QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT
                     LNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY
                     GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM"
     gene            complement(25333..26916)
                     /locus_tag="OQQ76_000246"
     CDS             complement(25333..26916)
                     /locus_tag="OQQ76_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1966862.1"
                     /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD
                     RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT
                     MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA
                     VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI
                     GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVD
                     HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEEEIRQLLERNQHT
                     RLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR
                     NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG
                     HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR
                     VQKVQIIPLRKDGEMEYEV"
     gene            complement(27117..27266)
                     /locus_tag="OQQ76_000247"
     CDS             complement(27117..27266)
                     /locus_tag="OQQ76_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966863.1"
                     /translation="MVIEYWLSNNAGGSVTANGIAGKVTIRQLAIFKNYIKCHSIWFL
                     GVSLG"
     gene            27575..28714
                     /gene="wza"
                     /locus_tag="OQQ76_000248"
     CDS             27575..28714
                     /gene="wza"
                     /locus_tag="OQQ76_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein Wza"
                     /protein_id="HCS1966864.1"
                     /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF
                     DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE
                     LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ
                     VDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN
                     GREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM
                     TLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGGNGKIANIYQLDMSDATSLVMATEF
                     RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW"
     gene            28720..29163
                     /gene="wzb"
                     /locus_tag="OQQ76_000249"
     CDS             28720..29163
                     /gene="wzb"
                     /locus_tag="OQQ76_000249"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase Wzb"
                     /protein_id="HCS1966865.1"
                     /translation="MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKG
                     ADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVM
                     LFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQALNAEQV"
     gene            29166..31328
                     /gene="wzc"
                     /locus_tag="OQQ76_000250"
     CDS             29166..31328
                     /gene="wzc"
                     /locus_tag="OQQ76_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase Wzc"
                     /protein_id="HCS1966866.1"
                     /translation="MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITAVFALC
                     AVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGK
                     TVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDNK
                     NYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHARPGSEFTVTKYSTLGMINQLQNSL
                     TVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQL
                     PEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNVDAQLNELTFKEAEISKLY
                     TKVHPAYRTLLEKRQALEEEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNK
                     EQELKITEASTVGDVRIVDPAITQPGVLKPKKGLIILGAIILGLMLSIVGVLLRSLFN
                     RGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIE
                     AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR
                     KGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSER
                     FAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSR
                     FEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK"
     gene            31421..32260
                     /gene="wcaA"
                     /locus_tag="OQQ76_000251"
     CDS             31421..32260
                     /gene="wcaA"
                     /locus_tag="OQQ76_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaA"
                     /protein_id="HCS1966867.1"
                     /translation="MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS
                     NSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNR
                     LSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQV
                     FTWAWRFKDCLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSP
                     KKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGI
                     RGR"
     gene            32263..32751
                     /gene="wcaB"
                     /locus_tag="OQQ76_000252"
     CDS             32263..32751
                     /gene="wcaB"
                     /locus_tag="OQQ76_000252"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaB"
                     /protein_id="HCS1966868.1"
                     /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNIWAAPL
                     LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG
                     ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV
                     IK"
     gene            32748..33965
                     /gene="wcaC"
                     /locus_tag="OQQ76_000253"
     CDS             32748..33965
                     /gene="wcaC"
                     /locus_tag="OQQ76_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaC"
                     /protein_id="HCS1966869.1"
                     /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK
                     ESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHV
                     LHSYWLNLKSVVHFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP
                     TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPWRCRIIN
                     NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALDDKIELHT
                     FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI
                     ATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ
                     QMLEEYVNFYQNL"
     gene            33940..35157
                     /gene="wcaD"
                     /locus_tag="OQQ76_000254"
     CDS             33940..35157
                     /gene="wcaD"
                     /locus_tag="OQQ76_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid polymerase WcaD"
                     /protein_id="HCS1966870.1"
                     /translation="MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLL
                     LFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIR
                     FKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL
                     NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGV
                     MTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGS
                     SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY
                     FSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV
                     CPFILRKALNITR"
     gene            35168..35914
                     /gene="wcaE"
                     /locus_tag="OQQ76_000255"
     CDS             35168..35914
                     /gene="wcaE"
                     /locus_tag="OQQ76_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaE"
                     /protein_id="HCS1966871.1"
                     /translation="MLLSIITVAFRNLEGIVKTHASLAHLAQAEDISFEWIVVDGGSN
                     DGTREYLENLNGIYNLRFVSEPDNGIYDAMNKGITMAQGKFALFLNSGDIFHQDAANF
                     VRKLKMQKDNMMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKW
                     RYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQ
                     ILHVPGFWAELSWHLRQRTTSKTKALYNKV"
     gene            35930..36478
                     /gene="wcaF"
                     /locus_tag="OQQ76_000256"
     CDS             35930..36478
                     /gene="wcaF"
                     /locus_tag="OQQ76_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaF"
                     /protein_id="HCS1966872.1"
                     /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA
                     FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ
                     KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKS
                     LPANVVCRGNPAVVIRERVETE"
     gene            36504..37625
                     /gene="gmd"
                     /locus_tag="OQQ76_000257"
     CDS             36504..37625
                     /gene="gmd"
                     /locus_tag="OQQ76_000257"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HCS1966873.1"
                     /translation="MSKVALITGVTGQDGSYLAEFLLKKGYEVHGIKRRASSFNTERV
                     DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT
                     ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
                     KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL
                     GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF
                     EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK
                     PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES"
     gene            37628..38593
                     /gene="fcl"
                     /locus_tag="OQQ76_000258"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
     CDS             37628..38593
                     /gene="fcl"
                     /locus_tag="OQQ76_000258"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
                     /EC_number="1.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HCS1966874.1"
                     /translation="MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDS
                     RAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL
                     LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS
                     VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA
                     AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK
                     PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG"
     gene            38596..39075
                     /gene="gmm"
                     /locus_tag="OQQ76_000259"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
     CDS             38596..39075
                     /gene="gmm"
                     /locus_tag="OQQ76_000259"
                     /gene_synonym="nudD"
                     /gene_synonym="wcaH"
                     /gene_synonym="yefC"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose mannosyl hydrolase"
                     /protein_id="HCS1966875.1"
                     /translation="MFLRQEDFATVVRSTPLVSLDFVVENSRGEFLLGKRTNRPAQGY
                     WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY
                     VVLGFRFRVSEEELLLPDEQHDDYRWLTPDALLASDNVHANSRAYFLAEKRAGVPGL"
     gene            39072..40295
                     /gene="wcaI"
                     /locus_tag="OQQ76_000260"
     CDS             39072..40295
                     /gene="wcaI"
                     /locus_tag="OQQ76_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis fucosyltransferase
                     WcaI"
                     /protein_id="HCS1966876.1"
                     /translation="MKILVYGINYSPELTGIGKYTGEMVEWLVAQGHEVRVITAPPYY
                     PQWQVGENYSTWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR
                     RWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA
                     QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHIADADV
                     DALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADLLRDEPLIFAIVGQGGGKARLE
                     KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN
                     AVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL
                     DKENVLRQFINDIRG"
     gene            40298..41725
                     /gene="cpsB"
                     /locus_tag="OQQ76_000261"
     CDS             40298..41725
                     /gene="cpsB"
                     /locus_tag="OQQ76_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HCS1966877.1"
                     /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT
                     ICRLKGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAAKRH
                     SPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPEIGYGYIRR
                     GEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYR
                     PDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSD
                     VGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTKDAV
                     LIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITVKPG
                     EGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLD
                     LIEVRSGSYLEEDDVVRFADRYGRV"
     gene            42006..>42851
                     /gene="cpsG"
                     /locus_tag="OQQ76_000262"
                     /gene_synonym="manB"
     CDS             42006..>42851
                     /gene="cpsG"
                     /locus_tag="OQQ76_000262"
                     /gene_synonym="manB"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis phosphomannomutase
                     CpsG"
                     /protein_id="HCS1966878.1"
                     /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG
                     GDVRLTSETLKLALARGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF
                     GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFSNGIP
                     NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE
                     KNPGAK"
BASE COUNT        10351 a        11166 c        11547 g         9787 t
ORIGIN      
        1 tcaaaccaac cagccataat gactccttga ttgaaattgt gtatcgaaaa cagcatctaa
       61 aggtgctgtt taccgattaa agtatgagcg attttctgat gcctgccagg gcggagagat
      121 aatgtcagtt tgctgaccat gcgtgggata atgtggccgg atcgggtctg aacgccatct
      181 ccggctaaca aaataatgtc gctaaaacta aacgatgcgg caggcgtcgg cttcccagcg
      241 gtaaccgacg ccgtaaacgg cgcggataaa tgactgttcg gcgtcgagag attccagctt
      301 gcggcgcagg tttttaatgt ggctgtcgat ggtgcggtcg gttactacgc ggtagtcgtc
      361 ataaagatga ttgagcaaat gctcgcggga gaacactttt cctggttcat gagagagcgt
      421 tttcagcaga cgaaattccg caggcgtcag gtcaagcatt ttaccgcgcc atgaagcctg
      481 aaaacgacct tcgtcgataa tcaacgggct ttcagcatcc tgttgctgca actcgcgctg
      541 cggtttgcaa cggcgcaaaa tggttttgac gcgcgctacc acttcccgtg ggctgtacgg
      601 cttgcagatg tagtcatctg cgccaatctc cagccccagc aggcgatcga tctcttcgat
      661 ttttgccgtc accatcacga tcggaatgtc agaaaaacga cgaatttccc ggcacagcgt
      721 caggccatcg gtgccaggga gcatcagatc taacaggatc agatccggtg gtgtctggcg
      781 cacatacggc agtacctgat cgccgtggct gataagcgtc ggcgcatagc tcgcagcacg
      841 cagataatca atgagcaact gccccagctt cggttcatct tccacgatca aaatacgcgg
      901 tgtgttttcg tcgattggta actcggtcat acttctctct gtaaatcccg ttccagcggt
      961 aactctactg taatgcttac cccgccaaaa ggcgaatggg cagcaataat gcgaccatta
     1021 tgtgcttcaa caatgttcag gcaaatcgcc agccccagcc cggaaccgcc gctggcacgg
     1081 ttgcgggaac cttcggtgcg ataaaaacgt tcaaacaatt tttgtagctg atcgtcactg
     1141 acacctggcg cactgtcggc aaaggtcagg cgcaccgttt tgtcgcgctg cccggcagag
     1201 atttgcaggc tgccgccgct gtcagtgtag cgcaggctgt tttccagtaa gttattgaat
     1261 aactgcatta aacggtcgcg atcgccaaat acggtaatac tgtctggcag ggaaaattgc
     1321 agtttcaggc cacgactggc gaatcgttcg cgaaatgcgc cgcccgccac ttccagcagt
     1381 gggatcaaat ctaccggtgc tttttgatag gcgagagcgc cttcatcaga catcgacaac
     1441 tgatggagat cgtcaaccag tttggtcagt gtaccgacct ccgcctgtaa agacgccacc
     1501 gtctccggcg tgaatttacg cacgccatcc tgaatggctt ccagttcacc gcgcagcacc
     1561 gctaatggcg tacgcagttc gtgagaaata tcggccataa aatcgcgccg catttgctgg
     1621 tttttctcca gtgtgctggc aagctggttg aagtcttgcg ccagtttgcc cagttcatct
     1681 tcactggtgg gcgttacgcg ggtagtgaaa tcgcccgccg ccagtttgtg cgtgccatcg
     1741 acaagtcgtt ttaccggtgc cagtaaaccg cgcgccagca gaaaagtggc aagtgccgcg
     1801 agtaacgttg ccagggcgac aatcaaccag ctggtttgcc gctgttgttt atcgaaattg
     1861 atatcagtat tgcgcgttaa ccgctcaacg ggggaggcga tcaccgcgcc aacttccgca
     1921 ccgttgacca gaatgggtcg ccgtgtaccg tcaggtggaa tcggcgctcg cggaccaacc
     1981 agcactttgt tgttttgatc aaccacccag aactgggtac gccagccgtg cggtggcata
     2041 cccgggccgg gtttatcttc cgaattatcg tgttcaaatg aacgcaggat ctgaaagaca
     2101 aagcgatcat tgttgcgcag gaagcgccag ttgccatgct gcgcatactg ctcgccaagc
     2161 gcatcactta acagttgtaa tcgctgttca ttaccatgct tgatgtaatc aataaagcca
     2221 cgctcaaaac tgatacgcac cgcccagtgc atactgatca gcaagacaat gcaggtggcg
     2281 aaaatcgcca gaaacagttt gccggtaata ccgggtcgcc agaacttcat tgcgcgctcc
     2341 tttttcgccg cgaaatagct acattttgat gcgtatcgtt cggcactctg gcaaagatga
     2401 acgccggaag ggcgatgatc aacgccatgc taagccaggt gtacataaag acggtttgtg
     2461 tggtgccgct gtcgacgctg acatgctgtg aaccaaaaag tcccagcaac agcccggcga
     2521 tagtgacgcc gatactcatc gacaattgca taatcatcga cagcaggctg tttccgctgc
     2581 tcgccagatt gtccgggaga tctttcagcg tcagggtgtt catggaggag aaacgcgtcg
     2641 agttgaccat cccttgtaaa aacaggacga acggcaaaac gtagtaccag cccagcaggg
     2701 cggtagtcat aaacaacagg gtgaccagcg acaggccaag cgtggttgcc accagtaccc
     2761 gacgatagcc aaagcgattc accacctgta ccacaattcg cttcatcccc atgctgccga
     2821 gcaccatcgg gatcatcatc agtccggcat gaaaaggcga gaaaccgagg ccaatttgca
     2881 ggaaaaccgg tgtcataaag ggcaacatgc cactgccaat acgtccggca aagctccccg
     2941 ccaggcccag cgaaaaggta cgagtacgga acagtttcag actgaacagg gcacggttgt
     3001 tatttctggc atgcagcaga taaagcacca gtgccaccac gccaactgcg accaggcctg
     3061 caatcgtcag cggcgataaa cctgtacctt tactgccgtc cagcgccagg gttaataccg
     3121 ccatgccaac cgccagcaat aaaaatccgg agagatcaaa gcgccgcgtc tgcatggtgt
     3181 agttcggcat taacagcaat gtggcgatcg caccgataat ccccaccgga atgttgatca
     3241 aaaagatcca gtgccacgac gcgtactcca ccagcagacc gccgagcgcc ggaccgagca
     3301 gcggaccgac ctgaccgggt aacgtgacaa aggtcatcgc cgccatatat tgctcgcgcg
     3361 gtacgatttt catcaccgtc aatctgccga ccggcaccat catcgcgccg ccaacgccct
     3421 gtaacgcgcg tgccagcaac agttcgttca gcgtgccgga aagcgcgcaa aacagtgaac
     3481 cgagagtaaa cagcacgatg gcggtaaaga aaatattgcg cacgccgact ttgtccgcca
     3541 gccagccgct ggcgggcagc atcaccgcca cggtcagcac ataagagaca atgaccatgt
     3601 gcatatgcaa cggactttcc ccgaggcttt gcgccattga gggaagggcg gtgtttacga
     3661 tggtggtgtc cagcgactgc ataaagaagc cgaaagccac aatccacaat tgccaacggg
     3721 tgctgtcggg aagatctgtc atttactcgg ttaccgtttg tttaggttta cgcgaaaaac
     3781 gcagccgcag acggtcgaaa aagagataca ccaccggcgt ggtatacagc gtaaggagct
     3841 ggctcattac cagtccgccg acaatggtga tccccagggg ttgccgcagc tccgagccgt
     3901 caccgcccga caacaccagc ggcagcgcgt caaacagcgc cgccagggta gtcatcataa
     3961 tcgggcgaaa acgcagcaga caggcctgga aaatagcttc ctgcggcgtc aggttaccgt
     4021 gccgttgggc ttcaagcgca aaatcgacca tcataatggc gtttttcttc acgatgccga
     4081 ttaatagcat gatccctatc agggcgatta ggctgaacgg ggcattgaac agctccagcg
     4141 ccagcagcgc tccaacgccc gccgagggca gggtggagag gatcgtcagc ggatgtacgt
     4201 aactctcgta aaggataccc agcacgatat acaccgtggc gatggcggcg ataatcagga
     4261 tcacctgtga gttcatcgtc tcctggaaca cctgcgccgt gccggcaaaa ctgccgcgca
     4321 ccgtcgaagg cacaccaagc tgggtcattg cgcgatcgat cgccgcactg gcgtccgaga
     4381 gcgattttcc ggtcggcagg ttgaacgaga tggtcgaggc tgccgataat ccctgatgat
     4441 tcaccgatag tggggcattc gccggttgcc atttagcgaa atacgacagc gggatcgctt
     4501 tgccttcgtt attaatgacg aacatttttt ccagagcgct gatgtcctgg gtatagcgcg
     4561 gatccacttc catcaccact ttatactggt tcatcggctg ataaatggtc gagatttgcc
     4621 gctgaccgaa ggcgttattt aacaggctgt tggcggcctg cacgtcgatt cccagccgtg
     4681 ccatggtgtc gcggtcgtaa accagattca tctccgcgcc gttatcctgc tgatcggagt
     4741 tcacgtccgc cagttccggc aacgtcgcca gttttttgcg gatttttggc tcccattcgc
     4801 gcagtgccgc caggtcgtcg gataacaacg tgtactggta gctggcgttc gactgacgcc
     4861 caccaacgcg aatatcctgt accgccatca ggaacagatt cgcccccggt tctttcgcca
     4921 gttttgcgcg cagacggtcg ataatttgct gcgccgtttc gctgcgttcg tcgcgtggct
     4981 tgagggtgat aaacatcatc ccgctgttca ctcgcgaacc gcctgtaaag ccggtgacat
     5041 tatccactgc cggatcgtca cggataattt tcatgaaatc ctgcaactta ccgcgcatcg
     5101 cctgaaacga aatactctga tccgcctgaa tcccgcccat caacacgcca gtgtcctgct
     5161 ccgggaagaa ggttttcggg atcgagatat acagccagat attcagcgca atggtgccaa
     5221 gcagcaccac gcccaccaga cgggtatgat tgagcaccca tttcagcgac ttgccatagc
     5281 cttgttgcag ggctaccaac atgcggccaa aaccacgcag tcgcttttgc tcgcgcggct
     5341 tgctggcttt cagcatccag ccacacatca ttggcgttag cgtcagggaa accagcaacg
     5401 aaataccaat ggcgacagaa agcgtcacgg caaactcgcg taacagtcgg cccggcaatc
     5461 cgcccatcaa cagcagcggc aggaacaccg ccaccagtga cagactcatc gacagcaccg
     5521 taaaaccgac ttcgcgagta ccttgcagtg cggcttgcaa cggtttcatt cccgcttcca
     5581 gatgacgtgc aatgttttcc agcaccacga tggcgtcatc caccacgaaa ccagtagcga
     5641 tggtgagcgc cattaacgaa aggttattga gactgaatcc gcacaggtac atcgccgcaa
     5701 acgtaccaat cagcgaaacc ggcaccgcaa cggcgggaat aatagtggcg cgacccgagc
     5761 gcaggaataa aaacaccacc agaatcacca gcgccaccga gataatcagc gtttgctcga
     5821 cttcttccag cgaggcgcga atggtggggg agcgatcctg ggcaatttgc agatcaatcg
     5881 ccgccggaat ggtttcctgc aactccggta attttgcccg gatgctgtca accgtctgga
     5941 taatattggc ttccggcagc ttgcggatca tcagcaaaat agccggtttg gcgttggtca
     6001 tcccggcgtt gcgcacatcc tgcactgagt cggtcaccgt cgccacatcg cccagacgaa
     6061 ccgcgccgcc gttgttgtag tgaataatca acggctgata ttcagcggcg gtttttagct
     6121 catcattggt ctggatctgc cagcggtgag tgccatcttc cagtgccccc tgcggtttac
     6181 gcacgttggc attgctgatg gcagtgcgta cgtcatccag cgacacgccc tgattaaaca
     6241 gcgcctgcgg gttcagcccg acgcgcacgg cgggcagcga gctgccgccg acatcgacat
     6301 caccgacacc gtcgatttgc aaaatcgtcg gagccagctg cgtcgaggcg aaatcgtaca
     6361 attcaccctg cgaataagta tcggaggtta gcgtgaggat cataattggc gcatccgacg
     6421 ggttcgcttt gcgataagtc gggcggctgg gcatcccact gggcagcaga ctttgtgcgg
     6481 cgttgatcgc cgcctgcaca tcacgcgccg caccgttgat atcccggtca aaatcaaact
     6541 gcaaaataat acgcgtgctg ccgagcgaac tgctggaggt catttcactg accccgacaa
     6601 tgcgcccaag tgaacgctcc agcggcgtgg caacggaaga cgccattgtc tccggcgacg
     6661 caccgggcag cgaggcgctg accataatca ccggaaaatc gacctgcggc agcggggcga
     6721 ccggcagcat acggaagccc agtatgccgc acagggtaat ggcgaccgac agtaaaatcg
     6781 tcgccaccgg gcggtaaatg aagagggcaa aaaacttcac ttacgcctcc tcttcatgac
     6841 aggcaaagcg gcttttagtc cacaatgcca ggcggtcgaa cagcagataa atcactggcg
     6901 tggtaaacag cgtcagtacc tggctgacaa ccagaccacc gaccatacca atgcctaacg
     6961 gacgacgcag ttccgcgccg accccggtac tcaacatcag cggcagcgcg ccaagcagag
     7021 ccgccagggt ggtcatcagg atcggacgaa aacgcagcag acaagcctgg tagattgcat
     7081 cgcgcggcga catgccttgc tcgcgctcgg cagccagcgc gaagtcgatc atcatgatgg
     7141 cgtttttctt cacgataccg atcagcaaaa taatgccgat aatcgcaatc acatccagtt
     7201 cgctaccggc aatcattaac gccagcagtg cgccaacacc tgccgtgggc aacgtcgaga
     7261 gaatggtgat tggatgaata aagctctcgt acagaatgcc gagcacgata tacatcgcca
     7321 ccaccgctgc gacaatcagc cagacagtgc tgcccagcgc cgactggaag gcgagggtgc
     7381 agccctggaa ctgcgtggtg atatccaccg gtagattcag cgtcttttca gtgtccataa
     7441 tcgcctgcac cgcatcgccc agcgaataat tatccggcac gttaaaggag atggttgtta
     7501 ccgggaactg atccagatgg ttgatggaga gcggtgcaaa acgctgctca attttggcaa
     7561 tcgaacttag cggaaccacg ccaccgtcgc tgctggtcag gcgaatggta cccagcgccg
     7621 cgaggcctgg ggtattttcg gtgttgtgtt ccagcaccac gcgatactgg ttggcttgag
     7681 tataaatagt ggaaatcagc cgctgaccaa acgcgttgta cagggcgtta tcgacatctg
     7741 ccatgctgat ccccagacgg ctggcgctgt cacgatcaac attgacatac gccaccagcc
     7801 ctttgtcctg ccagtcgctg gagacatcag aaagctgtgg cagttgctgg agtttttcca
     7861 tcaactgtgg cacccaggta ctgagcgcat ccagtgacgt ggcctgcaag gtaaactggt
     7921 actgggtgcg gctgacctga gtatcgatgg tcaggtcctg cgttggttgc aggaagagat
     7981 cgacgcccgg cactttatcc accgccgttt gcagacgggc gatgactttt tgcacccgat
     8041 catcacgttc atccagcggt ttgaggttga tctgcaaacg cgcactgttc agcgacgggt
     8101 tagtgccatc aacgccaaca aatgaggtca gactttgcac tgccggatcc tgcaaaatca
     8161 cgtccgcgac ctggcgttgc cgctgggcca tattggcaaa ggagctggat tgcggtgcct
     8221 gcaaagtgcc ctgaataatg ccgttatcct gtaccgggaa gaaacctttc ggaatgaaca
     8281 cccacaatag aacgctaagc agcagcgtgc tgagcgccac gcttaaggtc agccacggat
     8341 gattcagcac tttcgccagt ccacgaccat aggcggcgat tatcctgtcg aacatttttt
     8401 ccgaggcacg ggagaagcgg ttctgtttac gcaacgactc ctggctgagc atccgtgcgc
     8461 acatcatcgg tgtcagggtt agcgacacca cggctgagat taaaatcgct accgccaggg
     8521 taatagcaaa ttcgcggaac agtcgcccga cgatatcgcc cataaacagc agtgggatca
     8581 acaccgcaat cagcgagaag gtcagcgaga taatggtaaa gccgatttca cctgcgcctt
     8641 tgagcgccgc cgccaacggt ttttcgcctt tttcgatata gcgggaaata ttttcgatca
     8701 ccacgatggc gtcatcgacc acgaacccgg tggcgatagt taacgccatc agcgtcaggt
     8761 tattgattga aaaatcgaga aacaccataa ccgcgaaggt gccgattaac gacagcggca
     8821 ctgcgacgcc gggaatgatg gtcgccggaa tattgcgcaa aaacaggtag ataatcatta
     8881 ctaccagcgc gatagccatc atcaattcac actgagtatc gtcgacggat gcgcggatat
     8941 tggtggtacg gtcagaaagt accgtcacct ccaccgattt cggcaaactc tcggtgagct
     9001 gtggcagcat ctgccggatg ctgtcggcgg tggagataat gttagcaccg ggctggcgct
     9061 gaacattcat cacaatggcc tgttctttgt tcgcccatgc gccgagccag ctgttttctg
     9121 caccttgctc tacggttgcg acatcgccca gacgaatcgg cgcgccgttc tggtaggcga
     9181 taatcaactg gcgatattct tccgcagatt gcatttggtc attcgcggaa agcgtaaccg
     9241 cgcgggaagg gccgtcgagg ctaccttttg ccgagttaac gttagcgccg gtaatggcgg
     9301 tgcgcacggt ttcgctggtc aggccgaggg cggcaatcgc ctgagcgtta agtttgacgc
     9361 gaacagccgg acgctggccg ccggaaagcg tcaccaggcc gacgccggaa atctgcgaga
     9421 ttttctgcgc gacgcgggtt tccaccatat cttccacttg cgtcatcggc atggcggttg
     9481 aggtaacggc gagcgtcatg atcggcggat ctgccgggtt cactttgctg taaaccggcg
     9541 ggttaggcag atcgctcggc aacaagttgg tcgcagcgtt aatcgcggcc tgcacttcct
     9601 gctcggcgac atccagcggt aatgttagct ggaactgtaa ggtgataact gacgcaccgc
     9661 cggaactttg cgacgacatc tgtttcaggc cagacatctg cccgaactgg cgttcgagcg
     9721 gcgcggtaac ggcagaggtc atgacatccg ggctcgcacc tgggtagagc gtgaccacct
     9781 gaatggtcgg atagtccact tccggcagcg ccgaaacggg cagggcgcga taaccgataa
     9841 tcccggcgag taagatcgcc accatcagca gcgtggtggc gacaggacgc ataataaaca
     9901 ggcgcgacgg gccgcctgtg ctgctcggag gtaacacctg catcaggagc gtgctccttt
     9961 tttcgcgtat tcgcggctgg tggctttctc ttccggagtg gtggcgctct gggcttccac
    10021 cacttccact ttcgcccctt cggtcaggcg atcaatgccg tctgtcacca cgcgatcgcc
    10081 cgcagaaata cctgcacgga tcaccacttt ctgactgtcc tgaatgcccg gcgtcaccag
    10141 atgtttgctg accttgtttt cgctattcag cacccagaca aaatggcctt cattgcccat
    10201 ttgcagggcg gctgttggga tcactacggc gttttgttcg gtgtcgacta acatgcgcgc
    10261 gttaacaaac tgattgggaa acagcgcatc atcctgatta ttaaagcgtg ctttcacttt
    10321 aatcgtaccg gtagtggcat cgatttggtt atcgagactt aacagcgtgc cttcacttaa
    10381 tttcttcgag ttggtgcgat cccaggcttc taccaccagc ggtttcccgg ctttttgcgc
    10441 ctgcacgacg gtagcgatat cgctttccgg cagggtaaag agcaaatcga taggatgcgt
    10501 ctgggtgatc accacgatcc cggtggtatc accactggag atttggttac caacatcaac
    10561 ctgcttgaga ccaacgcgac catcgactgg tgcggtgatg cggctccagt cgagttgcag
    10621 ctgcgcgctg gcgacgcttg cttcatcagc cttaatggtg ccttcggttt cactgaccag
    10681 cgcctgttgg gcatccagct cctggcggga gacgagattg gtttttgcca gttgctgata
    10741 acgcgccaga tcacggcggg cgttggtaag cgtggcttta tcttttgcca gttggccctg
    10801 ggcttgtgct aatgcaactt tgaactggct ggggtcaatt tctgccagta aatcgcctgc
    10861 tttgacctgc tggccttcct ggaaatgtaa cgccatcagt tgaccatcca cgcggctgcg
    10921 caccgtaaca gtattagcgg cggtaatggt gccaagcccg gtgaggtaac gtggaactgc
    10981 ctgttctacg gcggtcgccg cctgaaccgg ggctaatggg ccggaacgca taccacggcg
    11041 accacccgct ggcgattgct gcgcttgttt cgtcgcccct ggggctgcac tctgggagtc
    11101 attgcggcct tgccagaacc agaatgcggc gatggcggcg ataaccacca cgattacgat
    11161 tacccaacgg gatttataac tgcctttcat cgttaagagt ttctcttcct gaaacgtttc
    11221 gcggaatgat actagtgtag ccagccaata agggagaaaa atggaggaat tatgaaacac
    11281 tatcgggaat cgtctgaatg gcgggcacat ttgcgagcac gcatccagta ataacacagg
    11341 aaactatttt atctacgcgt tagcgataga ctgcttgcat ggcgaaagga ggtaagccga
    11401 cgatttcagc gggacgctga aacgggaaag cccctcccga ggaaggggcc ataaataagg
    11461 aaagggtcat gatgaagata ctcatcatcg tggtgctctt agtgattagc tacccagcat
    11521 actaagacta ccagggcggg ggaaaccccg ctctaccctc actcctgaaa gtatgccttc
    11581 acgttcagaa tgtcaatccg caggctttgc agtctgcgat cctgccagca aatattcttt
    11641 gcgagtcgtt acgcaataat cacacttgaa actattttat ccgcaagtca gcgatagact
    11701 gcatacaggg cgaaaggagg taagccgaag atttcagcgg gatgctgaaa cgggaaagcc
    11761 cctcccgagg aaggggcctt aaataaggaa agggtcatga tgaggctact catcatcgtg
    11821 gtgctcttag tcattagctg gccagcttac taagactacc agggcggggg aaaccccgct
    11881 caaccctcac tgctgaaagt atgccttcac gataagattg tcaatccgca ggctttgcag
    11941 tctgcgatcc tgccagcaaa tattctttgc gagtcgttac gcaataatca cactggaaac
    12001 tattttatcc gcaagtcagc gatagactgc atacagggcg aaaggaggta agccgaagat
    12061 ttcagcggga cgctgaaacg ggaaaccctc tcccggagaa gagggctttt aataaggaaa
    12121 ggggtatgat gaagcacgtc atcatactgg tgatactctt agtgattagc ttccaggctt
    12181 actaagaacc ccagggggag ggggaaacct ctccctaacc ctcactcctg aaattatgtc
    12241 actccgccct tagtgtcaat cgacggctct ccgttcttgc gaggcgaata gcaaaatttt
    12301 ctgcgccgcc gggactaatt ctgaaagttt cttcgtttgc tcttatttca ttattgcagt
    12361 cggtatgata ccggacctca ataattctct aagaaaggat ttcttatgag cgaacaaatc
    12421 acgtttgcca ccagcgattt tgccagtaac ccggaaccac gttgcccctg cattttgctg
    12481 ctggatgttt ctggttctat gaacggtaga cccattaatg aacttaacgc cggattggtt
    12541 acctttcgcg atgagctgct tgccgattcg ctggccttaa aaagagttga actcggcatt
    12601 gtgacgttcg gcccggtgca tgtggaacaa ccctttacca gcgccgctaa ttttttcccg
    12661 cccatcctgt ttgcccaggg cgatacacca atgggcgctg ccattaccaa agccctggat
    12721 atggtagagg agcggaaacg tgagtatcgt gcaaatggta tttcgtatta tcgcccgtgg
    12781 attttcctga tcaccgatgg cgctccaacc gatgagtggc aggctgccgc caacaaagtg
    12841 tttcaggggg aagaagataa gaagtttgcc ttcttttcca tcggtgttca gggggcggat
    12901 atgaagactc tggcacaaat cagcgttcgt cagcctttgc cactgcaggg attacaattc
    12961 cgtgaactgt ttagctggtt atccagttcg ctgcgttcgg tttcccgctc cacgccggga
    13021 acggaagttg tgctggaagc gccaaaaggc tggacgtcag tgtgagctgg cgtctggttt
    13081 atgcatccgc tgttggaacg tcgcacatta gcgctgattt accttgtcag gatgcctgcc
    13141 agatgcaggt tgcctggcta aatgaccagc agccattact ggtgatgttc cttgctgatg
    13201 gcgcaggtag cgtttcgcag ggaggagaag gcgcgaagct cgccgtcaat gaagcgatgg
    13261 cgtttatggt gcaaaaagta caggacggtg aattggggct taatgatgtc ctcgccacaa
    13321 atatggtact gaccattcgt caacgacttt ttgccgaggc agaagccaaa gcattagcag
    13381 ttcgcgattt tgcctgcacg tttctgggat tgatttcatc ggctaacggc acattgatta
    13441 tgcaaattgg cgacggcggt gtagtggtgg attttggtcg tggtctggaa ctgccgctca
    13501 cgccgatggt gggtgaatat gccaatatga cgcatttcat tagcgatgaa gatgctgttt
    13561 ccagactgga aactttcacc agcactgagc gtgcgcataa agttgcagca tttacggatg
    13621 gtattcagcg actggcgtta aatatgctgg ataattctcc gcatgtgcct ttctttaccc
    13681 cgtttttcaa tggactggcg gcagcaacgc aggaacaact cgatttatta cctgaattgt
    13741 taaagcagtt tttgtccagc ccggcggtaa acgagcgtac cgatgatgat aaaacgttgg
    13801 cactggcgct gtggttacca tgaaacccac tttatatact gctactggtg agtgcgttac
    13861 gccaggccgt gaactgggca aaggtggcga aggcgcggtt tatgatatca atgagtttgt
    13921 cgatagcgtc gccaagattt atcacacgcc gccacccgcc ttaaaacagg acaaacttgc
    13981 ctttatggct gcgacagctg acgcgcagtt gttgaattat gtcgcctggc cgcaggcaac
    14041 gcttcacggt gggcgaggcg gaaaggttat cggttttatg atgccaaaag tttctggtaa
    14101 agaaccgatt catatgatct atagcccggc acatcgtcgc cagagttacc ctcattgtgc
    14161 gtgggatttt ctactctatg ttgcgcgcaa tattgcttta tcttttgcta cggttcacga
    14221 gcacgggcac gtcgtggggg acgtaaacca gaacagcttt atggtaggtc gcgacagcaa
    14281 agtggtgttg atcgatagtg actcctttca gattaacgcc aatggcacac tgcatttatg
    14341 cgaagtcggc gtgtcgcatt ttacgccgcc agagctacaa accttgccat catttgtcgg
    14401 ttttgaacgt accgcgaatc acgataattt tggccttgcg ttgctgattt ttcacgtctt
    14461 gtttggtggg cggcatcctt attctggtgt gccgcttatc tctgatgcgg gtaatgcgct
    14521 ggagacggat attgcccatt tccgttatgc ctacgcgtca gacaaccagc gacgtggttt
    14581 aaaaccgccg ccacgatcga ttccgctgtc gatgttaccg ggcgatgttg aagccatgtt
    14641 tcagcaggcg tttacggaaa gtggcgtagc aaccgggcgt ccgacggcta aagcgtgggt
    14701 agcagcactg gattctctac gccaacagtt aaagaaatgt accgtttcgg caatgcatgt
    14761 ttatcccgct catttgaccg actgcccgtg gtgtacgctg gataatcaag gcgttatcta
    14821 ttttattgat ctcggcgaag aggtcattac caccggcggt gattttgtgc tggcgaaagt
    14881 ctgggcgatg gtgatggcgt cagtcgcgcc gccagcattg caactgccat tacccgatca
    14941 tttccaaccg actggcaggc cgcttccttt aggcctgtta cggcgcgaat acatcattct
    15001 gattgagatc gcactgtcag cgttatcgct gctgctttgc ggccttcagg cagaaccgcg
    15061 ttatattatt ttggttcctg tgctggcggc tatctggatt attggcagtc tgacaagcaa
    15121 agcgtacaaa gcagaagttc agcaacgccg tgaggcattt aatcgcgcga aaatggacta
    15181 tgaccattta gtcagccaga gccaacagtt gggcgggctg gaaggtttta tcgccaaacg
    15241 gacgatgctc gaaaaaatga aggacgaaat tctcgggtta ccggaagaag aaaaacgtgc
    15301 tctggcagca cttcacgaca ccgcaaggga acggcagaag cagaagtttc tggagggatt
    15361 ttttattgat gttgcctcta ttcccggcgt tggccctgcg cgtaaagcgg cgttacggtc
    15421 ctttggtatt gaaacagcag cggatgttac ccgtcgtggg gttaagcaag ttaaagggtt
    15481 tggtgatcat ctgacccagg cggtcatcga ctggaaagcg agctgtgaac gccgttttgt
    15541 gttcaggccg aacgaagcgg taacgcctgc agaaagacaa gcggtaatgg cgaaaatggc
    15601 cgccaaacga catcggctgg aattggcgtt gactgtcggc gcgacagagt tgcagcgatt
    15661 ccgccttcat gctccagcac ggaccatgcc gttgatggaa ccgttacgtc aggcggcaga
    15721 aaaactggct caggcgcagg cagatttaag tcgctgctga gccatttttc aattaacgaa
    15781 acaccacttc cgcccagcgt gccagcccgg cggtgacgga gccaaagtca tcgccgcctg
    15841 caatcggaat gcccggcaac tgttctgcca gcgctttttt aatcagcggc gaacgggcgc
    15901 taccgccggt caggtagatg acatccggtt tttcctgggc gttatccagg gccagttgca
    15961 cctgttccag aatccgcgcc agtggctggc tgagggcgct ttccagccct tgctggctaa
    16021 tcagcgtagc cagttcatcg ctgataaacg gcagtgaggc gcgggtttcc gctacgcttg
    16081 aaagagcaat tttgcactct tctgcgctac gcaccaggcg atagcttaaa cgctgacgcc
    16141 agattttctg tagcagggcc actttttccg gttcgcgggc atcgcgtacc agatcgttaa
    16201 gcagacgacc gttggcacta ctgtagaaat cactctgcgc aggtacgtcg ttgatggcca
    16261 ccgcattcca ccacggcaga atcggcaggg cgatgccttt ttcggtttcg ccccccatac
    16321 ccagcagtgg catcaggttt ttaaacgcta gtgcgatatc cagatcgtta ccgccaatac
    16381 ggtaaccact gtgacccagc aggctggctt cacgatcgag acgcgaacgc cactgcggcc
    16441 ccatcagcag caatgaacag tcagtcgtac caccgccgat atccaccacc agtacccgtt
    16501 tttcttcctg taaggtggct tcgtaatcca gcccagccgc taccggctcg tactggaata
    16561 ccacgtccct gaatccggca cgcttcgccg cgcgttccag aatcccttgc gcctgggtgt
    16621 ttgcttcatc accgcccaga ccctgaaagt tgatcgggcg accaatcacc gcctgagtaa
    16681 tcgtttctgg cagctgtgcc tgcgcctgct ggcgaatgtg caacatcatt gcgcagacca
    16741 gatcctcaaa cagcgctacc tgctgcggtt ttaagccgct ggcaccgagg aacgattttg
    16801 gtgatttcac aaaccacact tcttccggat catcaatgta ctgtgccagt gaggaaagac
    16861 cgaactgcac gcttttcgcc gtaacatcga tatcttcttc gtggttataa cgaatcgccc
    16921 gacgtaacag cgcctgcgtt tcatcgtcgt ctgccggaac atcatgatgg cggtacagcc
    16981 attcgcttac cgcctcacgc gttggcgcgc aaagcattga aggcagcagc gtgctgtcgt
    17041 tttccatttt tagcaagtgc ggtttaccgt cacgcatgat cgccactgaa cagtttgctg
    17101 taccgtaatc aaaaccaata aacacgaaat aatccccatg ccggtgaaga aggggcgtga
    17161 ctttagcgaa atgttgccgt cgcgacaacc ggaatatgaa agcaaagcgc agcgtctgaa
    17221 taacgtttat gctgaaagcg gatgaataag gagatgcgat gtataccctg aactggcagc
    17281 cgccgtatga ctggtcgtgg atgttgggat ttctcgccgc ccgtgcagtg agtggtgtgg
    17341 aaacggtcgc tgacgattat tatgcccgta gtctggcggt gggcgaatat cgcggcgtgg
    17401 tgactgctat tccggatata gcccgccata ctctgcacat aaatttaagt gcaggtttag
    17461 aacccgttgc cgctgagtgt ctggcgaaaa tgagccgcct gcttgatctg caatgtaacc
    17521 cgcagattgt taacggtgcg ttgggcaagt taggcgcggc gcggcccgga ttgcgtttac
    17581 ccggcagtgt tgatgctttt gagcagggcg tgcgggcgat tttaggccaa ctggtgagcg
    17641 tggcgatggc ggcaaaattg accgccaaag tggtacagct ttatggcgaa cggctggatg
    17701 attttccgga gtatatctgc ttccccacgc ctcagcggct ggcagcagcc gacccgcagg
    17761 cattaaaagc gttaggcatg ccattgaaac gggcagaggc gctgattcat ctggcaaatg
    17821 cggcgctgga gggcagctta ccaatgacaa taccgggcga cgtagaacaa gcgatgaaaa
    17881 cgctgcaaac ttttccgggt atcggacgct ggacggcgaa ttatttcgct ttgcgtggct
    17941 ggcaggcgaa agatgttttc ctgccggatg attatctgat taaacagcga tttccgggaa
    18001 tgacaccggc gcaaatccgc cgttatgccg aacgctggaa gccctggcgt tcttatgcgc
    18061 tgttgcatat ctggtatacg gaaggctggc aaccagacga agcatgacgt tggtcgccgg
    18121 atgcggtgcg agcgccttat ccggcctggg gaatgagcga tttgtaggca tgataagacg
    18181 cgttagcgtc gcatcaggcg atggggaagc acgcctcagt taatcgcgaa ataactacta
    18241 ttcaccagca aatccagcgg ttgggcatcg gcaatcacat caccataaat cagatcgacg
    18301 ccgatgccag aaagcgtatc catcactaag ggtaaaacga ctggcccggc gatggttttc
    18361 atcccgagtc gctgagcgtg cccctgaata atcgtaatca gcatctcatc catcaaatta
    18421 ccctgcacgt tggcgcataa ctcaccatca agtagcaggt aatctgccat attcgctttc
    18481 agcgagttga agatttgcag atcgcggccc acctggttga gcactatccg acatcccgcc
    18541 agccgcagtt tttgcacgct ttctgcgtgc tctaaaatcg cttcagccgg aataatcaga
    18601 tgtaataacc gtggtggtag agggctgttt tccagctgct caagcagatc attcaccagc
    18661 gtggcgctac tcaaaccggc aacggaaagg gggagggcga tgcttatgcc tttactggca
    18721 accgcttttg cggcctgctg gaaaaattcg tggaataccc ggcggtcaag agcatggcta
    18781 agcgccggat cgctgaagct acgacgaaat gtttgttcat caataatctc gccttcgcaa
    18841 ctccagagct taagtgaaat cagccacaaa ttacgcgctt ccgggatccg tggcaaagcg
    18901 acaccgtggg cgagcatcat caactgattc tctttaatca tccgccactg ttcatcaagc
    18961 gacatcgccg cccgttcgct atgtgcggca gcttgctgcg gttcgtaaac cgtcacccgg
    19021 ccccggccac catttttgga ggcataacag gcgatatcag cctgcgacat cacttctgcc
    19081 gcctgatgat tattgtcatc gatcaaggta atcccggcgc tggcacctac ccgatgtacc
    19141 cggccttccc atataaagtg atagtcattc acagcactga taatacgtgt agcgataaaa
    19201 cgagcgcttt caacattgca gtctggcagc agcagaccaa attcatcacc gccgagccgc
    19261 gccagcacgt cactggagcg cagcatactc agcatcaacg acgccagttc gcgcagcaaa
    19321 gcgtcgcccg ccgcatgccc ggcgctgtca ttcaccgctt taaagcgatc aagatcgata
    19381 aacaccagtg catgtcgctg atgcgtactg tttaccgttt gcagcaggat acgcagttgt
    19441 ttctcaaaac tggcgcggtt ggcgagatgc gtcagtgcat catgggaggc gctgtagctc
    19501 agctggcgca gcattttgcg tgattcggta acgtcctgaa tcaccagaac cgaaccaata
    19561 ttgctgccgt ccagagtact taacggcgta atactgtaat gcacgtcgta actgccgccg
    19621 ctccgacagt gcaacaccac atcttgttcg atcgcggaac gtgaggtgtc ggcactgtaa
    19681 atgttctcca ttaatggtcc gttgtcgcca aaagtaatat gcaacaccgt caggagcgga
    19741 acacctaacg cttcttcctg cgtccagccg ctcatcttct ccgccactgg attcataaag
    19801 gtaattttca tcgccatatc aatacagacc acggcttcgc cgatggagtc cagcgtaatg
    19861 tgcaggcgct ctttttcctg aaacaatgcc tcgttaagct gtttaacctc agtcatatcc
    19921 atattaatgc cgagcaggcg ttcgacttcg ccttctttat tcagtacccg gttggcgagg
    19981 gcgcggatat ggcgaatacc gtcttttacg gtaatgcgaa attccagttt aaagggcgag
    20041 catgattgca acgaatcacg aatcactttt tcggcatgct ggcgatcttc cggcagcacg
    20101 cactcgtacc acacctgcca gttcggtttg atatgtggag gaatttcata cagctcgaac
    20161 atccgcttat cccagctaaa aatattcggc ttcaactccc actcccagat gccaatcccg
    20221 cccgcttcgt tagccagcgt gatgtgctcc atcagttgct gattgacctg ttcggtgcgt
    20281 tttagctcgt taatgtcttc aatctgagcg ataaaataga gcggcgtgcc atccgtgtgg
    20341 cgcaccagtg agacggcaag caacgcccag acaacatcgc cattgcggtt gtagtaacgt
    20401 ttttccattg aataggtgtt tatttcaccg cttatcagct tttcaacctg ttggagatct
    20461 ttattgagat ccttcggcca ggtcagttgc tggaaggtga gtccgcgcag ctcttcctga
    20521 ctgtaaccga gaaactggca gagtgctttg ttggattgca gccattgtcc ctcggtgccc
    20581 actaacgcca tgccgatagc ggaatattcc atcgcgttcc gaaaacgggt ttcgctttcg
    20641 gaaatgtgtt tgcgttccgc acgaaaggca tacatcacca tggtcatgat gttggcgggc
    20701 agcaggatca gcaaaaacgg tagccacggc atatggctca tcaggtacgt acgcggcgta
    20761 gcaagcaggg agggatccgc ggccatcatc agcgacacca tcatcaccgt ggtaaggaag
    20821 atcaaaaagg cttccattcg tggcaggcgc acggcgctcc acatcaacag cacaataatg
    20881 aaagtaaaag gccacggcag atacagcatc gaaagccagc ttaacgtcag tgtgatggct
    20941 aacgtgagca gcgactcaaa aagcaaccgt gggttgcgat ggcgcagcag atagtgtggt
    21001 ttaaataaca atcccagcgg caccagtgcc agagcgccga tggattctga cagtacccat
    21061 atcaaaaatg ccctgagagg atcgtctccg ggcgtcagca ggacaaccag aacacccccc
    21121 aacagaggtg gaacaatggc gctgccgagt gccagacgca gccagtcagc cagattttgc
    21181 aaggggttat accacggcag caatttacgt agcagcactg ccccgaccac ggcttcaaca
    21241 atattgatgg tcgtccaggt catgttcagc gagctggtgg aaaaaagcag gatggatgcg
    21301 gcgatatttc ccagcgaaca gctcagcgca attcccggcc acatgcgccc ggcatggcga
    21361 taaaacgcca ccatcatgat ggacgtcggg aaccacagtg gggcgagttg ggtgccaaac
    21421 tgcgaaagct caagcgagaa aagggtgaag ataaacgagg ctaaacctaa actgacctgg
    21481 tgaagcagcg ggtggggcag ggcaattaat acatgctgtg attgtttgct cattaccgct
    21541 ttatccgcaa ggccaggtcg ccagtattcg tttctgtgtt tatgctagta caaaagtttt
    21601 acattttata tgcgaattgc tcataaagtg acgtaaaggc ggataatttg cgcaactgcg
    21661 tataacattt tttactttgt ataaaactga tcaacgtaat ttgccaccgg gaattcttcg
    21721 tcaacaatta actctgagcg cgcggcaacg ttattcgact ggtatcaggc ggatgaaatc
    21781 cctataattg ccgcgtttgg cgcttcgtcg cccccttcct aacatccagg ttaatcaggt
    21841 cgctaaatat atgactgatc agtctcatca gtgcgtcatt atcggtatcg ctggcgcatc
    21901 ggcttccggc aagagtctta ttgccagtac cctttatcgt gaattacgtg agcaagtcgg
    21961 tgatgaacac atcggcgtaa ttcccgaaga ctgctattac aaagatcaaa gccatctgtc
    22021 gatggaagaa cgcgttaaga ccaactacga ccatcccagc gcgatggatc acagtctgct
    22081 gcttgagcat ttacaagcgt tgaaacgcgg ctcggcaatt gacctgccgg tttacagcta
    22141 tgttgaacat acgcgtatga aagaaacggt gacggttgag ccgaagaagg tcatcattct
    22201 cgaaggcatt ttgttgctga cggatgcgcg tttgcgtgac gaacttaact tctccatttt
    22261 cgttgatacc ccgctggata tctgcctgat gcgccgcatc aagcgtgacg ttaacgagcg
    22321 tgggcgttca atggattccg tgatggcgca atatcaaaaa accgtgcgcc cgatgttcct
    22381 gcaattcatt gagccttcta aacaatatgc ggacattatc gtgccgcgcg gcgggaaaaa
    22441 ccgcatcgcg atcgatatat tgaaagcgaa aataagtcag ttctttgaat aagcttgata
    22501 aattgtgtac cgttcagtga taacctggta tgcccttgac gtaattggcg ttaagggagt
    22561 gatgcgcgaa aggagaaaat gccatgcgtc tgtgtgaccg agatattgaa gcctggcttg
    22621 atgaaggccg tttgtcgatc aacccacgtc cgccagtgga gcgtattaac ggcgcgacgg
    22681 tggatgtacg cctgggcaat aaatttcgta ccttccgtgg tcacacggca gcgtttatcg
    22741 atctgagcgg tcccaaagat gaagtgagcg ccgcgcttga ccgcgtgatg agcgatgaga
    22801 tcgttctcga cgagggcgag gcgttctatc ttcacccagg agagctggcg ctggcggtga
    22861 cgctggagtc ggtgacgctg ccagccgatc tggtgggctg gctggacggg cgttcctcac
    22921 tggcgcgtct ggggctgatg gtgcacgtca ccgcgcaccg catcgatccg ggctggtctg
    22981 gttgcattgt gctggagttc tacaactccg gtaagctgcc gctggcgctg cgtccgggca
    23041 tgttaattgg tgcgctgagc tttgagccgc tttccggccc ggcggcgcga ccttacaacc
    23101 gccgtgaaga tgcgaaatat cgcaaccagc agggcgcggt agccagccga atcgataaag
    23161 actaattcag gcccattgag gataccatga gacgatttct gacgacgctg atgatactcc
    23221 tggtcgtgct ggtggccggg ttatctgcgt tagtgttgct ggtgaatccg aatgatttcc
    23281 gcgactatat ggtcaagcaa gttgctgcac gtagcggtta tcaattgcag ctcgacgggc
    23341 cactgcgttg gcacgtctgg ccgcagctta gtatcctctc cgggcgaatg tctctcaccg
    23401 cccagggcgc aagccagcca ctggttcgcg ccgacaacat gcgtctggac gtggcgcttt
    23461 taccactact gagtcatcaa ctgagcgtta agcaggtgat gctaaaaggg gcagtgatcc
    23521 aactgacgcc gcagacggaa gcggtgcgca gtgaagacgc tccggttgca ccgcgcgaca
    23581 ataccttgcc ggatctgtca gacgatcgcg gatggtcgtt tgatatatcc agtcttaagg
    23641 tggcggacag cgtgctggtg ttccagcatg aagatgacga gcaggtgaca atccgcaata
    23701 ttcgcctgca aatggaacaa gatccccaac atcgtggttc atttgagttc tccgggcggg
    23761 ttaatcgcga tcagcgcgat ctcacgatat cccttaacgg tacggtagat gcttctgatt
    23821 atccgcatga tttaacggcg gctattgaac aaattaactg gcagttgcag ggtgccgatt
    23881 taccaaaaca aggtattcag gggcagggga gtttccaggc ccagtggcag gagtcacata
    23941 aacgcctttc atttaaccaa attagtttga ccgccaatga tagtacgcta agcgggcaag
    24001 cacaggttac gctgacagag aaaccggaat ggcagctgag gctgcaattc ccgcaactga
    24061 atcttgacaa cctcatcccg cttaatgaaa ccgcgaatgg tgaaaacggt gccgcgcagc
    24121 aggggcagag ccaatcaacg ttgccgcgcc cggtcatttc ttcgcgtatt gatgaaccgg
    24181 cctatcaggg actgcaaggc tttacggctg atattttgtt gcaggccagt aacgtgcgct
    24241 ggcgcggaat gaattttaca gatgttgcca cgcaaatgac caacaagtcg ggtttgctgg
    24301 aaattactca actgcagggc aaacttaacg gtggacaggt ttcactgccg ggcacgctgg
    24361 acgcgacatc aataaatccg cggataaact tccagccacg gctggaaaac gttgagattg
    24421 gtaccattct gaaggcgttt aactatccga tttcgttgac cggaaaaatg tcactggctg
    24481 gtgatttctc cggtgctgac atagatgccg acgcattccg ccacaactgg caaggacagg
    24541 cacatgtcga aatgaccgac acgcgcatgg aagggatgaa cttccagcag atgattcagc
    24601 aagcggtaga gcgtaatggc ggtgatgtga aggccgctga aaactttgat aacgtgacgc
    24661 ggcttgaccg ctttaccacc gatttgacgt tgaaggatgg cgtcgtgacg ttaaacgaca
    24721 tgcaaggtca atcgcctgtg ctggcgctga caggggaagg catgttgaat ctggcagatc
    24781 aaacctgcga cacccagttt gatattcggg tcgtgggtgg ctggaacggg gaaagcaaac
    24841 tgattgattt cctgaaagaa acgccagtac cgctgcgggt ttatggcaac tggcagcaac
    24901 tcaattacag cctgcaagtg gatcagttac tgcgcaaaca tctacaggac gaagcgaaac
    24961 gtcgcctgaa tgactgggcc gagcggaata aagattcccg taatggcaaa gatgtgaaga
    25021 agttgcttga gaagatgtag gttaccaggt gaccagtcct gtaggcctga taagacgcgt
    25081 aaagcgtcgc atcaggcgtt cgtggcggca tcattatatt ctgaatatgt aagatcgaag
    25141 gctgttccgt tcacttgatg ttcctcgtta ctatggaacg ctcaagccgg tgaacgtgcc
    25201 agggtggctc aatcgccacc accctggcaa cccgggccca cacccccgct gtgatgtcca
    25261 tgtaccacag acaacgcttc attgctgaag ttataaggcg tcacgcagca tcgggtaaaa
    25321 tgaccgatac catcacacct cgtactccat ctcgccatcc ttacgcagcg gtataatctg
    25381 caccttctgc acgcgatggc tttccacctg caacgtttta agcaaataat cccccacctg
    25441 aacttcttcg ccaggttttg gaatacgttg caaatactcc atcaacagcc cggcaatggt
    25501 gtgatattca cgtttttcat ccagcggcag cggcacatat tgcaccagat cttccagcgg
    25561 catatgacca ttcgccgtcc aggaaccgtc cgcattcttc tgaatatcat ggcgggcgtc
    25621 gatctcttcc acttcgttcg gtaagttacc ggcaatggtt tcagtgacgt cacttaatgt
    25681 cacaatccct tccaccgagc caaactcatc caccacaaaa gcaaagtgcg tgcgggcatt
    25741 acggaactgc tccagggcag gtaacaacgg caaggtttcc gggaacacca gcggctggcg
    25801 aatcaacacc cgcaggttga gcggttcgcc gcgcagtgac tgttgtagca ggtcgataac
    25861 gtgaacaaca ccgagcaaat cttctgcgtc atcaccgtcg gtaaccacca gccgcgtatg
    25921 ctgatttcgc tccagtaact ggcggatttc ttcttccggc gcgttgagat cgatatgctc
    25981 aatatcgtgg cgcgacgtca taatgctgct gacggtacgc tggttaagat taagtacccg
    26041 ctcaatcatc cgccgttcct gcggattaaa gatctgctgg ttaccatgat ccaccagcat
    26101 ggacgcggtt tcggcgtcca gttccgcatc ttctttttgc ccgctaagca ggcgcattac
    26161 cgcttcggta gtccgctggc gcagcgtctg gttagcggaa agaaaacgtc gccggttaaa
    26221 gatagccaac tgattgagtg cctcgatcat caccgagaaa ccaatggcag cgtacaggta
    26281 gcctttcgga atgacgaagc cgaaaccttc tgccaccagg ctaaagccaa tcatcaacag
    26341 gaagcttaag cagagaataa cgatcgtcgg gtgactgtta acaaattgcg ttaacggctt
    26401 gctggccatc aacatcaggc tgatagcgat aaccacggcg gccatcatga ccagtaaatg
    26461 gtcgaccatc ccgacggcgg taatcactga gtcgagtgag aagatggcgt ccagtaccac
    26521 aatttgcgtc accacgcccc agaacttcgc acctttgcgt tgtgtgggat tattgctgtc
    26581 tttcccttcc agccgttcgt tcagctccat cgtggctttg aacaacagga agaaaccacc
    26641 aaacagcatg attaagtcgc gggcgctaaa ggtaaacgag cggaagctga acagcggttg
    26701 agtcagggtg accagccagg agattgacgc cagcagtaac aggcgcatta acatcgccag
    26761 cagcagcccg gtaacccgtg cgcggtcgcg ctgcttcggc ggtagttttt cggcgaggat
    26821 ggcaataaag accaggttat caatgccgag gaccagttcg atcacaatca gtgtgattaa
    26881 cccggcccag atagacggat cggcaatcca ttccatagta agtacaaaac ctattcgttg
    26941 tatgacaaat gtcacaattc gatcatggat aaatcggggc aaaaatgcaa tgttgcagca
    27001 ctatttatct catattattt gagggtaata acctcacatt atccctgaat taaaagtggt
    27061 aataataaaa catcatttaa gaaatatcgc atgtggaggc gcaatattaa atattgtcaa
    27121 cctaaagaaa ctcctaaaaa ccatattgaa tgacacttaa tataattctt aaaaatagcc
    27181 aattgccgaa ttgttacctt gcctgctatt ccgttagctg taacacttcc tcctgcatta
    27241 ttggagagcc aatattcaat taccataatg tcaccttata ttcggaagtt aatttccgca
    27301 ataacccttt ctcatcaacg attgtatgca gagagggttt gaaaaattaa gctaaatcag
    27361 tgtattggta gctaaaaagc caggggcggt agcgtgtctg gatgcctgaa agaccagtct
    27421 gaattattct gtcaatagcc tgcggatgaa atcaattttt ttaggactga tgccagttaa
    27481 atttgtattc aattaactgc aaggtaaatg tgcatggcga cattgctatt aatagtgcac
    27541 aggataatta ctctgccaaa gtgataaata aacaatgatg aaatccaaaa tgaaattgat
    27601 gccattattg gtgtcagtaa ccttgataag cggttgcaca gtacttccgg gtagcaatat
    27661 gtcgacgatg ggcaaagacg tcatcaaaca gcaggacgct gatttcgatc tcgacaaaat
    27721 ggtgaatgtt tatccgctga ccccgcgcct gattgaccaa ttacgcccac gcccgaatgt
    27781 agcgcgcccc aatatgacgc tggaaagcga gatcgcgaat taccagtatc gcgtcgggcc
    27841 gggggacgtt cttaatgtca ccgtctggga tcacccggaa ctcaccacgc cagccggtca
    27901 gtaccgcagc tccagcgaca ccggcaactg ggtacagcct gacggcacta tgttttaccc
    27961 gtatatcggc aaggttcacg tagtggggaa aacgctcgct gaaatccgca gtgatattac
    28021 cgggcgctta gcgacgtaca tcgctgaccc gcaggtggac gttaatatcg ccgccttccg
    28081 ctcacaaaag gcctatatct ccggtcaggt gaataaatcc ggtcaacagg cgatcaccaa
    28141 cgtgccactg actattctcg acgccatcaa cgccgcaggt ggcctgaccg acaccgctga
    28201 ctggcgcaac gtagtgctaa cacacaatgg tcgtgaagaa cgcatttctt tgcaggcgct
    28261 gatgcaaaac ggcgacctca atcagaaccg actgctttat cccggcgata ttctctacgt
    28321 gccgcgtaat gatgatctga aagtatttgt gatgggtgaa gtgaagaaac agagcaccct
    28381 gaaaatggac tttagcggca tgaccctgac tgaagccctg ggtaatgctg aaggtatcga
    28441 catgaccacc tccaacgcca gcggcatctt tgtcattcgt ccgctgaaag gcgagggcgg
    28501 gggtaacggc aagattgcca atatctacca gctggatatg tccgatgcca cgtcgctggt
    28561 gatggcgaca gaattccgcc tgcaacctta tgacgtggtg tatgtcacca ccgccccggt
    28621 ttcccgctgg aaccgtctga tcaatcagtt gctgccaact attagcggtg tccgttacat
    28681 gacggataca gccagcgaca ttcataactg gtaatcgtca tgtttaacaa catattagtt
    28741 gtctgtgtcg gcaatatttg ccgttccccg acggcggaac gcttactgca acgttatcac
    28801 ccggaactga aagtggagtc cgctggactc ggcgcgctgg tcggtaaggg cgctgatcct
    28861 accgctatca gcgtcgccgc agaacatcaa ctgtctctgg aaggccactg tgcacgacaa
    28921 atcagccgcc gcctgtgtcg caactatgac ctgattttga ccatggaaaa gcgccatatc
    28981 gaacgcttat gcgagatggc acctgagatg cgcggcaaag tgatgctgtt tggtcactgg
    29041 gataacgaat gtgaaatccc cgatccgtat cgcaaaagcc gggaaacgtt tgcagcggtg
    29101 tacacattac ttgaacggtc tgcccgccag tgggcgcagg cattgaacgc agagcaggta
    29161 taagaatgac agaaaaagta aaacaacatg ccgctccggt aacgggcagt gatgaaatcg
    29221 atattggtcg cctggtcggc accgtcattg aagcgcgctg gtgggtgatt ggcatcaccg
    29281 ctgtatttgc cctctgtgcc gtggtttaca ccttcttcgc cacgccgatt tatagtgccg
    29341 acgcactggt acaaatcgag caaaacagcg gcaattcgtt agtgcaggac attggttcgg
    29401 cattagccaa caaaccgcct gcatcggacg ccgagatcca gttgattcgt tcgcgtctgg
    29461 tgcttggtaa aacggtggac gatctcgacc tcgatattgc ggtgagcaaa aacacgttcc
    29521 cgattttcgg tgcgggctgg gatcgtttga tgggacgtca gaacgagacg gtgaaagtga
    29581 ccacctttaa ccgcccgaaa gagatggcgg accaggtgtt tacgcttaat gtgctggaca
    29641 ataaaaacta caccctgagc agtgatggcg gctttagcgc ccgtgggcaa gcgggccaga
    29701 tgctgaaaaa agaaggcgtc acgctgatgg ttgaagccat tcacgcccgc ccgggcagtg
    29761 agtttaccgt caccaaatac tccacgttgg ggatgatcaa ccaactgcaa aacagcctga
    29821 cggtaacgga gaacggcaaa gacgcaggcg tactgagcct gacttatacc ggtgaagatc
    29881 gcgaacagat ccgcgacatt cttaacagca tcgcccgtaa ctatcaggaa caaaatattg
    29941 agcgcaaatc ggcggaagcg tcgaaaagcc tcgctttcct cgcgcaacag ttaccggaag
    30001 tacgtagccg cctcgatgtt gccgaaaaca aactgaatgc cttccgtcag gataaagatt
    30061 ctgttgatct gccgcttgaa gcgaaagcgg tgctcgattc gatggtgaac gttgacgcgc
    30121 agttgaacga actgaccttt aaagaggcgg aaatctccaa gctgtacacc aaagttcacc
    30181 cggcgtaccg cacgctgctg gagaaacgtc aggcgctgga agaagagaaa gccaaactta
    30241 acggtcgcgt aacggcgatg ccgaaaaccc agcaggaaat tgtccgtctg acccgcgatg
    30301 tcgagtctgg gcagcaggtc tatatgcaac tgctgaataa agagcaggag ctgaaaatca
    30361 ccgaagccag caccgtcggc gatgtgcgca ttgttgaccc ggcaatcacc cagccaggtg
    30421 tactgaaacc gaagaaaggg ctgattatcc tcggcgcgat tattcttggc ctgatgctct
    30481 ctatcgtggg tgtgctgctg cgctcgttgt ttaatcgtgg catcgaaagc ccgcaggtgc
    30541 tggaagaaca cggtatcagc gtctatgcca gcatcccgtt gtcggaatgg cagaaagcgc
    30601 gcgatagcgt caaaaccatc aaagggatta aacgctataa acagagccag ctactggcgg
    30661 tggggaatcc aaccgatctg gcgattgaag ccatccgcag tctgcgtacc agtctgcact
    30721 tcgcgatgat gcaggcgcag aacaatgtgt tgatgatgac cggggttagc ccgtcaatcg
    30781 gtaaaacctt tgtctgcgcc aacctggcgg cggtgatcag ccagaccaat aaacgcgtgt
    30841 tgttgatcga ctgcgatatg cgcaaaggct acacccacga gctgttgggc accaataacg
    30901 tcaatggcct gtcggaaatt ctgattggtc agggcgatat tactaccgca gctaaaccga
    30961 cctctattgc caaatttgac ctgatcccgc gcggtcaggt gccgccaaat ccttctgaac
    31021 tgttgatgag cgaacgcttt gccgaactgg tgaactgggc gagtaaaaac tatgacctgg
    31081 tgttgattga tacgccgccg attctggcag tgaccgatgc ggcaattgtt ggtcgtcatg
    31141 tcggaaccac attaatggtg gcgcgttatg cggtcaacac attgaaagaa gtggaaacca
    31201 gtctgagccg ctttgagcaa aacggtattc cggtgaaagg ggtgattctg aactccatct
    31261 tccgccgcgc cagcgcgtat caggattatg gctattacga atacgaatat aagtcggatg
    31321 cgaaataacg acgcctgcat tcgcaccgcc ccgtaggccg gataaggcgt tcacgccgca
    31381 tccggcaagc aaaccagctc ataagccggg agaacaacct atgaaagaca atccgctgat
    31441 ctcaatctat atgccgacct ggaaccgcca acaactggcg attcgggcga taaaatcggt
    31501 cttgcgccag gactacagca actgggagat gatcatcgtg gatgattgct ccaactcctg
    31561 ggaacaactg caacagtacg tcaccgccct caacgatccg cgtattacct acattcacaa
    31621 cgacattaac agcggggcgt gcgcggtacg taaccaggcg attatgctgg cgcaagggga
    31681 atacattacc gggatcgatg acgatgatga atggacgccc aaccgtctga gcgtcttcct
    31741 cgcccataaa cagcaactgg tcacacacgc ctttttgtac gctaacgact acgtttgcca
    31801 gggcgaagtc tattcccaac cggcaagctt gccgctgtat cccaaatcgc cgtattcacg
    31861 ccgcctgttc tacaaacgca atatcattgg caatcaggtc tttacctggg catggcgttt
    31921 caaagattgt ttgttcgata ccgaactaaa agcggcacag gattacgaca tcttcctgcg
    31981 gatggtggtg gagtatggcg aaccgtggaa agtggaagag gcgacgcaga tcctgcatat
    32041 caatcacggt gaaatgcaga tcacctcgtc accgaaaaaa ttctccggat acttccactt
    32101 ttaccgcaag cacaaagaca aatttgaccg tgccagtaaa aaatatcagc tgtttactct
    32161 ctaccagatc cgcaataaac gtatgacctg gcgcactttg ctgacgctgc tgtcggtgcg
    32221 taacggcaaa cgtctggctg atggtattcg ggggcgctaa agatgctgga agatctgcgc
    32281 gccaacagct ggagtttacg tccgtgctgc atggttctag cgtatcgcgt cgctcatttt
    32341 tgttcggtgt ggcgcaaaaa gaacgtcctc aacaatattt gggcggcccc tctgctggtg
    32401 ctgtatcgca ttatcaccga atgctttttc ggttatgaaa tccaggctgc cgcgaccatt
    32461 ggccgccgct ttactatcca tcacggttac gccgtagtga tcaataaaaa cgtggtggcg
    32521 ggggatgatt tcaccattcg ccacggtgtc actatcggca atcgtggtgc cgataacatg
    32581 gcatgtccac acattggcaa cggcgtcgaa ctcggtgcca acgtcattat tcttggtgat
    32641 atcacgcttg gtaacaacgt caccgtgggt gcgggcagcg tggtgctcga ctctgtcccg
    32701 gacaacgcgc tggtggtggg agaaaaagcg cgagtgaagg taattaaatg aatattctgc
    32761 aatttaatgt gcgactggcg gaaggcgggg cagcaggtgt ggcgttagat ctccaccagc
    32821 gtgcgctgca acaggggctg gcgtcacatt ttgtctacgg ttacggcaaa ggcggcaaag
    32881 agagcgtcag ccatcagaac tatccgcagg tcatcaaaca tacgccgcgg atgaccgcga
    32941 tggcgaatat tgccctgttt cgtctgttta atcgcgatct gtttggcaat ttcaatgagt
    33001 tatatcgcac cattactcgc acaccgggtc cggtggttct gcattttcat gtgctgcaca
    33061 gctactggct aaatcttaag agcgtggtgc acttttgcga aaaagtgaaa aaccataaac
    33121 cggacgtcac tctggtctgg acgctgcacg accactggag tgttaccgga cgctgcgcct
    33181 ttaccgacgg ttgcgaaggc tggaaaacag gctgccagaa atgcccgacc ttaaataact
    33241 atccgccggt gaagattgat cgcgcacacc aactggtggc gggcaaacgc cagttattcc
    33301 gtgagatgct ggcgctgggc tgtcagttta tttcccccag ccagcatgtg gctgatgctt
    33361 tcaatagcct gtacggtcca tggcgttgcc ggattatcaa taacggtatt gatatggcaa
    33421 ccgaagcgat tctggcggat ctgcctccgg tgcgcgaaac tcagggcaag ccgaaaatcg
    33481 cggtggtggc gcatgacctg cgttacgacg gcaaaactaa ccagcaactg gtgcgcgaga
    33541 tgatggcgct ggacgacaaa atcgaactgc ataccttcgg taagttctcg ccgttcaccg
    33601 ctggcaacgt ggtcaatcac ggctttgaaa ccgacaaacg taagctgatg agcgcgctca
    33661 atcagatgga tgcgctggtg ttcagttctc gtgtcgataa ctacccactg attttgtgtg
    33721 aggcgttatc aattggcgtg ccggtgattg ccacccatag cgacgcggcg cgtgaagtgt
    33781 tgcaaaaatc cggcggtaaa accgtcagcg aagaagaggt gctgcaactg gtccagttaa
    33841 gcaaaccgga aatcgcgcag gcgatatttg gtaccacgct ggctgagttc agccaacgca
    33901 gccgcgccgc ctacagtgga caacagatgc tggaggagta tgtcaacttc tatcagaatc
    33961 tgtagctacc tgctgctgcc gctgatctac ctgctggtta acgtcaaaat cgcccagctt
    34021 ggcgaaagtt tccccatcac catcgtcact tttttacctg tcttgttact gctgttttta
    34081 gaacgcatca gcgttaaaaa attgatgatt gccttaggga ttggcgcggg actcacggcg
    34141 tttaactacc tgtttggtca gtcgttggat gccagtaaat acgtcacttc aaccatgctg
    34201 tttgtctata ttgtgatcat tattggcatg gtgtggagta ttcgctttaa aacgatttcg
    34261 ccacacaacc atcgcaagat attacgtttc ttttatctgg tggtcgggct ggtggtggcg
    34321 ctggcggcag tggagatggc gcaaattatc ctcaccggcg gcagcagtat tatggagtcg
    34381 atttcgaaat atctgattta cagcaacagc tatgtgctga atttcattaa attcggcggc
    34441 aagcgcacga cagcacttta tttcgaaccg gcatttttcg ctctggcatt aatctcaatt
    34501 tggctcagca tcaaacagtt tggtatcaaa acgcctaaaa ccgatgctat gattctcgca
    34561 gggataatat tatccggatc gttttcaggg gttatgacct ttatcctgtt ttatttgctg
    34621 gagtgggcat ttcaatatct gaataaagag gcgattaaga aaaagttacc gttggcattg
    34681 atttctctgg ctgtattcct ggttggtgtg gtaatcgcgt ttccttatat ttccacccgt
    34741 ctgggcgatt taggtacgga aggatcgtca tcgtattatc gtattgtcgg tccgctggtg
    34801 atggtcggtt attctttgac ccatattgac ggtgtagtca gatttggctc actttatgaa
    34861 tatgtcgcat cattcggaat atttaacggt gcggatgtcg gaaaaaccat agacaatggt
    34921 ttgtatctgc tgattattta tttttcctgg ttcgcagtgt ttttatcgct gtggtacatg
    34981 gggaaagtga taaaaatgat gatcaacgct tttggtgata accgcaattt tcgcgtgcaa
    35041 ttatatcttt ttactccggt gtcgctgttt tttaccggtt cgatatttag cccggaatat
    35101 gcatttttaa tcgtctgtcc gtttattttg cgaaaagcgt taaatattac gaggtaagaa
    35161 taagaacatg ttgcttagca taatcactgt cgcgtttcgt aacctcgaag ggatagtcaa
    35221 aacacatgcc tcgctggcgc atctggcgca ggcggaagat atcagcttcg aatggattgt
    35281 tgtcgatggc ggttccaatg acggcacccg tgagtatctg gaaaatctca atggtatcta
    35341 taacctacgc tttgtcagcg agccagataa cggtatctac gacgccatga acaaaggcat
    35401 tacgatggca caaggcaagt tcgcgttgtt tctcaattcg ggcgatattt ttcatcagga
    35461 tgccgcaaat tttgtccgta agttaaaaat gcaaaaagat aacatgatga tcaccggcga
    35521 tgcgctgctg gattttggcg acgggcataa aattaaacgt agcgccaaac cgggctggta
    35581 tatttatcac agcctgcccg ccagtcatca ggcgatattt ttccctgtat ccggcttgaa
    35641 aaaatggcgt tatgacctgg aatataaagt ttcttccgac tacgcgctgg cagccaaaat
    35701 gtataaagcc ggttatgcat ttaaaaaact caatggcctg gtgtctgaat tttccatggg
    35761 tggggtatct accaccaata atatggaatt gtgtgctgac gcgaaaaaag tccaacgaca
    35821 aatattacat gtacctggct tttgggctga attatcctgg catttacgcc aacgtactac
    35881 ctcaaagacg aaagccttat ataacaaagt ctgaatataa ggagaaccaa tgcaagattt
    35941 aagcggtttc tcggtgccga aagggttccg gggcggcaac gctattaaag tgcaattatg
    36001 gtgggcagta caggcaacaa tatttgcctg gtcgccacaa gtattgtatc gctggcgggc
    36061 ttttttatta cgtttattcg gagcgaaaat aggaaaaaac gtagttattc gtccgtcagt
    36121 aaaaattacc tatccgtgga aattaacctt aggtgattac gcgtgggtcg gcgatgacgt
    36181 caatttatat accctcggtg aaataaccat tggcgcacat tcggtgatat cgcaaaaaag
    36241 ttatttatgc accggtagcc acgaccatgc aagtcaacat ttcaccatta acgccacgcc
    36301 tattgtgatt ggcgagaaat gctggctggc aaccgatgtc tttgttgccc caggcgtcac
    36361 aatcggcgac ggcaccgtcg tgggtgcacg aagcagtgtt tttaaatcgc ttccggcaaa
    36421 tgtggtttgc cgggggaatc ccgcagtggt gatacgcgaa cgcgttgaaa ctgaataaat
    36481 tcaaaaatac agaggaataa gacatgtcaa aagtcgctct catcaccggt gtaaccggac
    36541 aagacggttc ttacctggca gagtttctgc tgaaaaaagg ttacgaggtg catggtatta
    36601 agcgtcgcgc atcgtcattc aacaccgagc gcgtggatca catttatcag gatccgcaca
    36661 cctgcaaccc gaaattccat ctgcattatg gcgacctgag tgatacctct aacctgacgc
    36721 gcattttgcg tgaagtacag ccggatgaag tgtacaacct gggcgcaatg agccacgttg
    36781 cggtctcttt tgagtcacca gaatataccg ctgacgtcga cgcgatgggt acgctgcgcc
    36841 tgctggaggc gatccgcttc ctcggtctgg aaaagaaaac tcgtttctat caggcttcca
    36901 cctctgaact gtatggtctg gtgcaggaaa ttccgcagaa agagaccacg ccgttctacc
    36961 cgcgatctcc gtatgcggtc gccaaactgt acgcctactg gatcaccgtt aactaccgtg
    37021 aatcctacgg catgtacgcc tgtaacggaa ttctcttcaa ccatgaatcc ccgcgccgcg
    37081 gcgaaacctt cgttacccgc aaaatcaccc gcgcaatcgc caacatcgcc caggggctgg
    37141 agtcgtgcct gtacctcggc aatatggatt ccctgcgtga ctggggccac gccaaagact
    37201 acgtaaaaat gcagtggatg atgctgcaac aggaacagcc ggaagatttt gttatcgcta
    37261 ccggcgttca gtactccgta cgtcagttcg tggaaatggc ggcagcacag ctgggcatca
    37321 aactgcgctt tgaaggcacg ggtgttgaag agaagggcat tgtggtttcc gtcaccgggc
    37381 atgacgcgcc gggcgttaaa ccgggtgatg tgattatcgc cgttgacccg cgttacttcc
    37441 gtccggcaga agttgaaacg ctgctcggcg acccgaccaa agcgcacgaa aaactgggct
    37501 ggaaaccgga aatcaccctc agagagatgg tgtctgaaat ggtggctaat gacctcgaag
    37561 cggcgaaaaa acactctctg ctgaaatctc acggctacga cgtggcgatc gcgctggagt
    37621 cataagcatg agtaaacaac gcatttttat cgctggccat cgcgggatgg tcggttctgc
    37681 catcaggcgg cagctcgaac agcgcggtga tgtggaactg gtattacgca cccgcgacga
    37741 gctgaacctg ttggacagcc gcgcggtgca tgatttcttt gccagcgaac gcattgacca
    37801 ggtctatctg gcggcggcga aagtgggcgg cattgttgct aacaacacct atccggcgga
    37861 tttcatctac cagaacatga tgattgagag taacatcatt cacgccgcgc atcagaacga
    37921 cgtgaacaaa ctgctgtttc tcggatcgtc ctgtatctac ccgaaactgg caaaacagcc
    37981 gatggcagaa agcgagttgt tgcagggcac gctggagccg actaacgagc cttatgctat
    38041 tgccaaaatc gccgggatca aactgtgcga atcttacaat cgccagtacg gacgagatta
    38101 ccgttcagtc atgccgacca acctgtacgg gccgcacgac aacttccacc cgagtaattc
    38161 gcatgtgatc ccagcattgc tgcgccgctt ccacgaggcg acggcacaga atgcaccgga
    38221 cgtggtggta tggggcagcg gtacaccgat gcgtgaattc ctgcacgtcg atgatatggc
    38281 ggcggcgagc attcatgtca tggagctggc gcatgaagtc tggctggaga atacccagcc
    38341 gatgctgtcg cacattaacg tcggcacggg cgttgactgc accatccgtg aactggcgca
    38401 aaccatcgcc aaagtggtgg gttacaaagg tcgggtggtt tttgatgcca gcaaaccgga
    38461 tggtacgccg cgcaaactgc tggatgtgac gcgcctgcat cagcttggct ggtatcacga
    38521 aatctcactg gaagcggggc ttgccagcac ttaccagtgg ttccttgaga atcaagaccg
    38581 ctttcggggg taatgatgtt tttacgtcag gaagactttg ccacggtagt gcgctccaca
    38641 ccgcttgtct ctctcgactt tgttgtcgag aacagtcgcg gcgagtttct gcttggcaaa
    38701 agaaccaacc gcccggcgca gggttactgg tttgtgccgg gagggcgcgt gcagaaagac
    38761 gaaacgctgg aagccgcatt cgagcggctg acgatggcgg aactggggct gcgtctgccg
    38821 ataacagcag gccagtttta cggtgtctgg cagcactttt atgacgataa cttctctggc
    38881 acggatttca ccactcacta tgtggtgctc ggttttcgct tcagagtatc ggaagaagag
    38941 ctgttactgc cggatgagca gcatgacgat taccgctggc tgacgccgga tgcactgctc
    39001 gccagtgaca atgttcacgc taacagccgc gcctattttc tcgctgagaa gcgtgccgga
    39061 gtacccggat tatgaaaata ctggtctacg gcattaacta ctcgccggag ttaaccggca
    39121 tcggcaaata cactggcgag atggtggaat ggctggtagc acaaggtcat gaggtgcggg
    39181 tcattaccgc accgccttac tacccgcagt ggcaggtggg cgagaactat tccacctggc
    39241 gctacaaacg agaagagggg gccgccacgg tgtggcgctg cccgctgtac gtgccaaaac
    39301 agccgagcac cctgaaacgc ctgttacatc tcggcagttt tgccgtcagc agtttctttc
    39361 ctctgatggc gcaacgtcgc tggaagccgg atcgcattat cggcgtggtg ccaacgctgt
    39421 tttgcacgcc gggaatgcgc ctgctggcga aactctctgg tgcgcgtacc gtgctgcata
    39481 ttcaggatta cgaagtggac gccatgctgg ggctgggcct tgccggaaaa ggcaaaggcg
    39541 gcaaagttgc acagctggca acggcgttcg aacgtagcgg actgcataac gtcgataacg
    39601 tctccacgat ttcgcgctcg atgatgaata aagccatcga aaaaggcgtg gcggcggaaa
    39661 acgtcatctt cttccccaac tggtcggaaa ttgcccgttt tcagcatatt gcagatgccg
    39721 atgttgatgc ccttcgtaac cagcttggcc tgccggataa caaaaaaatc attctttact
    39781 ccggcaatat tggtgaaaag caggggctgg aaaacgttat tgaagctgcc gatctcctgc
    39841 gcgatgaacc gctgattttt gccattgtcg ggcagggcgg cggcaaagcg cggctggaaa
    39901 aaatggcgca acagcgtggt ctgcgcaaca tgcaattttt tccgctgcaa tcgtatgacg
    39961 ctttacccgc actgctgaag atgggcgatt gccatctggt ggtgcaaaaa cgcggcgcgg
    40021 cagatgccgt attgccgtcg aaactgacca atattctggc ggtaggcggt aacgcggtga
    40081 ttactgcaga agcccacaca gaactgggac agctttgcga aacctttccg ggcattgcgg
    40141 tttgcgttga accggaatcg gtcgaggcgc tggtggcggg gatccgtcag gcgctcctgc
    40201 tgcccaaaca caacacggtg gcacgtgaat atgccgaacg cacgctcgat aaagagaacg
    40261 tgttacgtca atttataaat gatattcggg gataattatg gcgcagtcga aactctatcc
    40321 agttgtgatg gcaggtggct ccggtagccg cttatggccg ctttcccgcg tactttaccc
    40381 caagcagttt ttatgcctga aaggcgatct caccatgctg caaaccacca tctgccgcct
    40441 gaaaggcgtg gagtgcgaaa gcccggtggt gatttgcaat gagcagcacc gctttattgt
    40501 cgcggaacag ctgcgtcaac tgaacaaact caccgagaac attattctcg aaccggcagg
    40561 gcgtaacact gcacctgcca ttgcgctggc ggcaaaacgt catagcccgg agagcgaccc
    40621 gttaatgctg gtgctggcgg cggatcatgt gattgccgat gaagacgcgt tccgtgccgc
    40681 cgtgcgtaat gccatgccgt atgccgaagc gggcaagctg gtgaccttcg gcattgtgcc
    40741 ggatctacct gaaatcggtt atggctatat tcgtcgcggt gaagtgtctg cgggtgagca
    40801 ggatacggtg gcctttgaag tggcgcagtt tgtcgaaaaa ccgaatctgg aaaccgctca
    40861 ggcctatgtg gcaagtggcg aatattactg gaacagcggc atgttcctgt tccgcgccgg
    40921 acgctatctc gaagaactga aaaaatatcg cccggatatt ctcgatgcct gtgaaaaagc
    40981 gatgagcgcc gtcgatccgg atctcgattt tattcgcgtg gatgaagaag cgtttctcgc
    41041 ctgcccggaa gagtcggtgg attacgcggt catggaacgt acggcagatg ctgttgtggt
    41101 gccgatggat gcgggctgga gcgatgtcgg ctcctggtcc tcattatggg aaattagcgc
    41161 ccacaccgcc gagggcaacg tttgccacgg cgatgtgatt aatcacaaaa ccgaaaacag
    41221 ctatgtgtat gccgaatctg gcctggtcac caccgtcggg gtgaaagatt tggtggtagt
    41281 gcagaccaaa gatgcggtgc tgattgccga ccgtaacgcg gtgcaggatg tgaaaaaagt
    41341 ggtcgagcag atcaaagccg atggtcgcca tgagcatcgg gtgcatcgcg aagtgtatcg
    41401 tccgtggggc aaatatgact ctatcgacgc gggcgaccgc taccaggtga aacgcatcac
    41461 cgtgaaaccg ggcgagggct tgtcggtaca gatgcaccat caccgcgcgg aacactgggt
    41521 agtggtagcg ggaacggcaa aagtcaccat tgacggtgat atcaaactgc ttggtgaaaa
    41581 cgagtccatt tatattccgc tgggggcgac gcactgcctg gaaaacccgg ggaaaattcc
    41641 gctcgattta attgaagtgc gctccggctc ttatctcgaa gaggatgatg tggtgcgctt
    41701 cgcggatcgc tacggacggg tgtaaacgtc gcattaggcg ctggttgtcg gatgcggcgt
    41761 gaacgcctta tccgacctac ggttcggatt tgtaggcctg ataagacgcg gcagcgtcgc
    41821 atcaggcgct ggctgtcgga tgcggcgtga acgccttatc cgacctacgg ttcgggtttg
    41881 taggcctgat aagacgcggt agcgtcgcat caggcaatga atgcgaaacc gcgatgtaaa
    41941 taacgacaaa aacaaaattg gccgcttcgg tcagggccaa ctattgcctg aaaaagggta
    42001 acgacatgaa aaaattaacc tgctttaaag cctatgatat tcgtggaaaa ttaggcgaag
    42061 aactgaatga agatattgcc tggcgcattg gtcgcgctta tggcgaattt ctcaaaccga
    42121 aaaccattgt gttaggcggt gatgtccgcc tcaccagcga aaccttaaaa ctggcgctgg
    42181 cgagaggttt acaggatgcg ggcgtcgatg tgctggatat cggcatgtcc ggcaccgaag
    42241 agatctattt cgccacgttc catctcggcg tggatggcgg cattgaagtt accgccagcc
    42301 ataacccgat ggattataac ggcatgaaac tggtgcgcga aggggctcgc ccgatcagcg
    42361 gtgataccgg actgcgcgat gtccagcgcc tggctgaagc caacgacttt cctcccgtcg
    42421 atgaaaccaa acgcggtcgc tatcagcaaa tcaatctgcg tgacgcttac gttgatcacc
    42481 tgttcggtta tatcaatgtc aaaaacctca cgccgctcaa gctggtgatt aactccggga
    42541 atggcgcagc gggtccggtg gtggacgcca ttgaagcccg ctttaaagcc ctcggcgcac
    42601 ctgtggaatt gatcaaagtg cacaacacgc cggacggcaa tttctccaac ggtattccta
    42661 acccgctgct gccggaatgt cgcgacgaca cccgcaatgc ggtcatcaaa cacggcgcgg
    42721 atatgggcat tgcctttgat ggcgattttg accgctgttt tctgtttgac gaaaaagggc
    42781 agtttatcga gggctactac attgtcggcc tgctggcaga agcgttcctc gaaaaaaatc
    42841 ccggcgcgaa g
//
LOCUS       DAJVUN010000006        41406 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.006, whole genome shotgun sequence.
ACCESSION   DAJVUN010000006 DAJVUN010000000
VERSION     DAJVUN010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 41406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41406
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.006"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(227..1084)
                     /gene="murI"
                     /locus_tag="OQQ76_000263"
     CDS             complement(227..1084)
                     /gene="murI"
                     /locus_tag="OQQ76_000263"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312925.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HCS1966879.1"
                     /translation="MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLL
                     PDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPA
                     LREKFDFPVVGVVPAIKPAARLTANSIVGLLATRGTVKRSYTHELIARFANECQIEML
                     GSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVL
                     PEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPEAEQLLPVLQRYGFE
                     TLEKLAVLG"
     gene            complement(1029..2877)
                     /gene="btuB"
                     /locus_tag="OQQ76_000264"
                     /pseudo
     CDS             complement(1029..2877)
                     /gene="btuB"
                     /locus_tag="OQQ76_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418401.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent vitamin B12 receptor BtuB"
     regulatory      complement(2931..3121)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            3235..4335
                     /gene="trmA"
                     /locus_tag="OQQ76_000265"
     CDS             3235..4335
                     /gene="trmA"
                     /locus_tag="OQQ76_000265"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HCS1966880.1"
                     /translation="MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHY
                     RMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR
                     HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK
                     IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY
                     CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG
                     VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPCILYISCNPETLCKNLE
                     TLSQTHKVERLALFDQFPYTHHMECGVLLTAK"
     gene            complement(4375..4734)
                     /locus_tag="OQQ76_000266"
     CDS             complement(4375..4734)
                     /locus_tag="OQQ76_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YijD family membrane protein"
                     /protein_id="HCS1966881.1"
                     /translation="MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLV
                     LTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIM
                     VFWIGAKMRNRKQEVAE"
     gene            complement(4734..5384)
                     /gene="fabR"
                     /locus_tag="OQQ76_000267"
     CDS             complement(4734..5384)
                     /gene="fabR"
                     /locus_tag="OQQ76_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HCS1966882.1"
                     /translation="MMGIRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI
                     APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
                     NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
                     IVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE"
     gene            5705..7105
                     /gene="sthA"
                     /locus_tag="OQQ76_000268"
     CDS             5705..7105
                     /gene="sthA"
                     /locus_tag="OQQ76_000268"
                     /EC_number="1.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Si-specific NAD(P)(+) transhydrogenase"
                     /protein_id="HCS1966883.1"
                     /translation="MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGG
                     CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ
                     GFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
                     PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE
                     MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD
                     SLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
                     KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN
                     VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM
                     AEAYRVAALNGLNRLF"
     gene            complement(7088..8005)
                     /gene="oxyR"
                     /locus_tag="OQQ76_000269"
     CDS             complement(7088..8005)
                     /gene="oxyR"
                     /locus_tag="OQQ76_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HCS1966884.1"
                     /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG
                     VMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVG
                     PYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPL
                     FDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH
                     FRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGS
                     PLRSRYEQLAEAIRARMDGHFDKVLKQAV"
     gene            complement(8272..9645)
                     /gene="argH"
                     /locus_tag="OQQ76_000270"
     CDS             complement(8272..9645)
                     /gene="argH"
                     /locus_tag="OQQ76_000270"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HCS1966885.1"
                     /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL
                     VTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK
                     LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA
                     QPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGF
                     ASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSG
                     SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDT
                     WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VEAIRQGKPLEDLPLDELQKFSHVIGEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIA
                     FAQARLG"
     gene            complement(9706..10482)
                     /gene="argB"
                     /locus_tag="OQQ76_000271"
     CDS             complement(9706..10482)
                     /gene="argB"
                     /locus_tag="OQQ76_000271"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418394.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HCS1966886.1"
                     /translation="MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGG
                     GCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGL
                     FLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVN
                     ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKV
                     NAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA"
     gene            complement(10490..11494)
                     /gene="argC"
                     /locus_tag="OQQ76_000272"
     CDS             complement(10490..11494)
                     /gene="argC"
                     /locus_tag="OQQ76_000272"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HCS1966887.1"
                     /translation="MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL
                     ISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDL
                     SGAFRVNDATFYEKYYGFTHQYPEQLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQ
                     LALKPLIDADLLDLNQWPAINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI
                     ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKG
                     VPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI
                     "
     gene            11648..12799
                     /gene="argE"
                     /locus_tag="OQQ76_000273"
     CDS             11648..12799
                     /gene="argE"
                     /locus_tag="OQQ76_000273"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HCS1966888.1"
                     /translation="MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFK
                     DLGFNVEVQPVPGTRNKFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHD
                     GKLYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTAL
                     RPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQ
                     LRDNLKERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTFNELNG
                     LLNDALAPVSERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEA
                     PFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELIIQVIHHFCWH"
     gene            13151..15802
                     /gene="ppc"
                     /locus_tag="OQQ76_000274"
     CDS             13151..15802
                     /gene="ppc"
                     /locus_tag="OQQ76_000274"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004203687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCS1966889.1"
                     /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKS
                     SRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE
                     VIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQ
                     LDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVP
                     NYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT
                     DLFLKDIQVLVSELSMVEATPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARL
                     KGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVR
                     IDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAE
                     TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL
                     DDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIK
                     TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP
                     EITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYF
                     RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK
                     VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKEL
                     RNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKE
                     GQEPDPRVEQALMVTIAGIAAGMRNTG"
     gene            15985..17718
                     /locus_tag="OQQ76_000275"
     CDS             15985..17718
                     /locus_tag="OQQ76_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase CptA"
                     /protein_id="HCS1966890.1"
                     /translation="MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTN
                     GIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLF
                     VMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALL
                     YGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNE
                     NNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLT
                     VFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMT
                     ARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQDVLNDPAPKKLIIVHLLGT
                     HIKYKYRYPENQGKFDGNTDHVPPGLSAEELESYNDYDNANLYNDHVVASLIKDFKAA
                     DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFS
                     QDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYD
                     TLPYGDQVGNQ"
     gene            17933..18784
                     /locus_tag="OQQ76_000276"
                     /pseudo
     CDS             17933..18784
                     /locus_tag="OQQ76_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709754.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(18771..19112)
                     /locus_tag="OQQ76_000277"
     CDS             complement(18771..19112)
                     /locus_tag="OQQ76_000277"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS1966891.1"
                     /translation="MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVSIETQGALG
                     TENRFADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVL
                     SAPQQTHLILE"
     gene            complement(19114..19992)
                     /locus_tag="OQQ76_000278"
     CDS             complement(19114..19992)
                     /locus_tag="OQQ76_000278"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418387.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[formate-C-acetyltransferase]-activating enzyme"
                     /protein_id="HCS1966892.1"
                     /translation="MTSSAGQRISCNVVETRRNDVARIFNIQRYSLNDGEGIRTVVFF
                     KGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDA
                     LEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPAS
                     KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPG
                     FTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKDVAAPSSADVAT
                     MREMAERAGFQVTVGG"
     gene            complement(19958..22255)
                     /locus_tag="OQQ76_000279"
     CDS             complement(19958..22255)
                     /locus_tag="OQQ76_000279"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1966893.1"
                     /translation="MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRA
                     KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFA
                     ISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATSTQIFSINQTDKGQGHIIID
                     YPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAVLAETMAANCT
                     DAQRREELLTIAEISRHNAEHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM
                     LPFYQASLTQGEDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT
                     ENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRLGTGIPQIF
                     NDEVVVPVFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHEN
                     EGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR
                     DITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGE
                     KVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPCGGYFTPGSYTVSAHVP
                     LGSVVGATPDGRFAGEQLADGGLSPMLGQDEQGPTAVLKSVSKLDNTLLSNGTLLNVK
                     FTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLWEAQQRPQDYAGLVVRVA
                     GYSAFFVELSKEIQDDIIRRTAHQL"
     gene            complement(22306..22626)
                     /locus_tag="OQQ76_000280"
     CDS             complement(22306..22626)
                     /locus_tag="OQQ76_000280"
                     /EC_number="2.7.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HCS1966894.1"
                     /translation="MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIG
                     LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHL
                     AQTA"
     gene            complement(22641..23720)
                     /locus_tag="OQQ76_000281"
                     /pseudo
     CDS             complement(22641..23720)
                     /locus_tag="OQQ76_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit EIIC"
     gene            24029..26530
                     /gene="ptsP"
                     /locus_tag="OQQ76_000282"
     CDS             24029..26530
                     /gene="ptsP"
                     /locus_tag="OQQ76_000282"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312903.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1966895.1"
                     /translation="MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRK
                     GNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDE
                     LEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALSNLPAAKDVDAEQSALE
                     NGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLRQHLLAGVSEGLSCAEAIVAS
                     ANHFCEEFARSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELT
                     PSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQHQTIYIDG
                     NAGAIVVEPGEAMARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVE
                     AQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGG
                     DKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGSLKIMIPMISSM
                     EEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFSIGSN
                     DLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVL
                     PLLVGLGLDELSMSAPSIPAAKARMAQLDSRECRKLLNQAMACRTSLEVEHLLAQFRM
                     TQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFST
                     GLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIF
                     SRLARRIMHEEFRNALVNAASADAIASLLQHELEL"
     gene            26542..27204
                     /gene="fsa"
                     /locus_tag="OQQ76_000283"
     CDS             26542..27204
                     /gene="fsa"
                     /locus_tag="OQQ76_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS1966896.1"
                     /translation="MELYLDTANVAEVERLARIFPIAGVTTNPSIIAASKESIWEILP
                     RLQKAIGDEGILFAQTMSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKMLKKE
                     GITTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRTVQELQALLEMHAPES
                     MVLAASFKTPRQALDCLLTGCESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTT
                     HL"
     gene            27215..28318
                     /gene="gldA"
                     /locus_tag="OQQ76_000284"
     CDS             27215..28318
                     /gene="gldA"
                     /locus_tag="OQQ76_000284"
                     /EC_number="1.1.1.6"
                     /EC_number="1.1.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional L-1,2-propanediol
                     dehydrogenase/glycerol dehydrogenase"
                     /protein_id="HCS1966897.1"
                     /translation="MDRIIQSPGKYIQGADVINRLGEYLKPLEERWLVVGDKFVLGFA
                     QSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKA
                     LAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGA
                     PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAM
                     LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVA
                     FGTLTQLVLENAPVEEIETVAALSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGE
                     TIHNMPGGATPDQVYATLLVADQYGQRFLQEWE"
     gene            28592..29209
                     /locus_tag="OQQ76_000285"
     CDS             28592..29209
                     /locus_tag="OQQ76_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HCS1966898.1"
                     /translation="MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGAR
                     QQIGNTLFYDPAYVRLTYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFA
                     EYPQKWKLKRPDSNIDHRRVPNLETWFSRHNKTRPISKNAGDYQAGDIVSWRLDNGLA
                     HIGVVSDGFARDGTPLVIHNIGAGAQEEDVLFSWRMVGHYRYFVK"
     gene            complement(29236..30141)
                     /gene="yijE"
                     /locus_tag="OQQ76_000286"
     CDS             complement(29236..30141)
                     /gene="yijE"
                     /locus_tag="OQQ76_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine transporter YijE"
                     /protein_id="HCS1966899.1"
                     /translation="MSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVTSYIGAFDFTAL
                     RCIFGALVLFIVLLLRGRGMHPTPFKYTLAIALLQTCGMVGLAQWALVSGGAGKVAIL
                     SYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFSSMKSAMLAILS
                     GVSWGASAIVAKRLYTRHPRVDLLSLTSWQMLYAALVMSVVALLVPQREIDWQPTVFW
                     ALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWLLGENPGAVEGS
                     GIVLIVLALALVSRKKKEAVSVKSI"
     gene            complement(30235..32415)
                     /gene="katG"
                     /locus_tag="OQQ76_000287"
     CDS             complement(30235..32415)
                     /gene="katG"
                     /locus_tag="OQQ76_000287"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HCS1966900.1"
                     /translation="MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVD
                     LLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIR
                     MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA
                     DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG
                     ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAG
                     PTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF
                     KYEWVQTRSPAGAIQFDAVDAPEIIPDPFYPSKKRKPTMLVTDLTLRFDPEFEKISRR
                     FLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDI
                     IDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVR
                     ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI
                     EMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFD
                     SSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKYTASRADL
                     VFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL"
     gene            complement(32744..33634)
                     /gene="metF"
                     /locus_tag="OQQ76_000288"
     CDS             complement(32744..33634)
                     /gene="metF"
                     /locus_tag="OQQ76_000288"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HCS1966901.1"
                     /translation="MSFFHASQRDALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNS
                     IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTI
                     ARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAK
                     SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK
                     QAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT
                     LNRAEMSYAICHTLGVRPGL"
     gene            complement(33983..36415)
                     /gene="metL"
                     /locus_tag="OQQ76_000289"
     CDS             complement(33983..36415)
                     /gene="metL"
                     /locus_tag="OQQ76_000289"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase II"
                     /protein_id="HCS1966902.1"
                     /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM
                     MVVSAAGSTTNQLINWLKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAF
                     VSDLERLAALLDSGINDAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE
                     RAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG
                     ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV
                     SGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLVH
                     KEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSEVADSALKILDEAGLPGELRLRQGLA
                     LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDGISLVAVLRTGPTESLIQGLHQ
                     SVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD
                     GLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGF
                     HVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTIL
                     SISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAR
                     EAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVV
                     RFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA
                     IQSDINRLAQLL"
     gene            complement(36418..37578)
                     /gene="metB"
                     /locus_tag="OQQ76_000290"
     CDS             complement(36418..37578)
                     /gene="metB"
                     /locus_tag="OQQ76_000290"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HCS1966903.1"
                     /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH
                     DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG
                     GSYRLFDSLVKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC
                     HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV
                     VTELAWWTNNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY
                     HPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLI
                     SHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG"
     gene            37855..38172
                     /gene="metJ"
                     /locus_tag="OQQ76_000291"
     CDS             37855..38172
                     /gene="metJ"
                     /locus_tag="OQQ76_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015855437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HCS1966904.1"
                     /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
                     QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPET
                     WEY"
     gene            38356..38964
                     /locus_tag="OQQ76_000292"
     CDS             38356..38964
                     /locus_tag="OQQ76_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX family permuted papain-like enzyme"
                     /protein_id="HCS1966905.1"
                     /translation="MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATH
                     SDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQK
                     LAQTVKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLV
                     QAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW"
     gene            39109..39801
                     /locus_tag="OQQ76_000293"
                     /pseudo
     CDS             39109..39801
                     /locus_tag="OQQ76_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(39956..40192)
                     /locus_tag="OQQ76_000294"
     CDS             complement(39956..40192)
                     /locus_tag="OQQ76_000294"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966906.1"
                     /translation="MKAIQCCYFLALVSSNLMAGVMGNDNIFLSNSDSAVLYCVAKIF
                     PDGENILIYKVNIINASSKKDVFFMKAQHQPTMT"
     gene            complement(40194..41406)
                     /locus_tag="OQQ76_000295"
                     /pseudo
     CDS             complement(40194..41406)
                     /locus_tag="OQQ76_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312891.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT        10137 a        11410 c        10296 g         9563 t
ORIGIN      
        1 ccgcttcgct ttttctcagc ggcgcggggt gtgcataata cgctttcccg ctacagagtc
       61 aagcatttat ttttgctttc tctgtcggaa ttctcaggag aaccccgctg acccggcggc
      121 gtgtttgccg ttgttccgtg tcagtggtgg cgcattatag ggagttattc cggcctgaca
      181 agaggaaatt taaaataatt ttctgaccgc gcaacattca accaaatcag cctaaaactg
      241 ccagtttttc gagcgtttcg aagccgtaac gctgtaaaac gggcaataat tgttcagctt
      301 ctggcgtcat tgccatacaa aaggcaatat tcgcatcggc agattttgca tccggggctt
      361 catgttctaa caaccaggcc gttcggcgag caatcgctgc gccagaatcc actagccggg
      421 ttccctctgg cagcacttgt aacagttctt cttgtagtag agggaaatgg gtgcaaccca
      481 atacaacggt atctggcggc tctttcattc ttaaccacgg gcgtaggata cgttttagtg
      541 catccagaga aacatcttcg ccatgtagct tcgcttcagc caactcaacc atctctgccg
      601 agcccagcat ttctatctgg cattcattag cgaaacgcgc gatcagctca tgagtataag
      661 aacgtttaac tgttccgcgg gttgccagta atccgacaat gctatttgcc gtcagacgtg
      721 cagcaggttt aatcgccggc acgacaccaa caaccggaaa gtcgaacttt tcgcgtaatg
      781 caggaagtga aacggtactg gcagtgttgc aagcgaccac agccagcgca aggggataac
      841 gttcttgcac cgcggtgaca attgccacca ctcgctcaac aataaacgct tcgctttttt
      901 caccatacgg gaaagcgacg ttatcgaaag cataaatgta atggagatcc ggtaagagat
      961 gccggatctc gtcatagacc gacaacccac cgacgccgga gtcaaacacc agcacggtgg
     1021 gacgtggttc agaaggtgta gctgccagac aaggtgtatt cccgtcctgc agtttggtag
     1081 ccatagactg tctcataatc tttgtcgaac aggttggcta ttttaccacg aactgtcagg
     1141 tgagaggtga ccggatacgc aaccgcaaga tcccacaagc tcacaccgcc cattttaacg
     1201 gtttgataag gataagatga gtaatcctta tcatagcgag tgcctaaata ctgataagta
     1261 ataccccagt cgaagtcata caactgccag tcgagctggt atttcacctg ctgtttagca
     1321 cggcgtaaca acggcgtgtc ggtaatcgca ttgcgcgcat cgacataatc ataactcaca
     1381 gtatgcgtca gtggtccggt atcaaaattg gcggtcgcct cgacgccctt aatccgcgct
     1441 ttcccttcgt tgtaatattt cagggtgtga tcatcataat cgatcaagtc actgacatcg
     1501 ttacgatatc cggaaatacg ccagttcacc ccagcggtta agccttcaaa cgcgccttcc
     1561 cactgtttgc ttttctccgg gtccagattc ggatttccgt agaagccata cagttgcccc
     1621 aaatttggtg ccttataaga tgtcccgtag gaagcaatga agcgataacc ttcgatgaat
     1681 tcccaaccgg cgctggtttg ccaggttcca tgacgaccaa actgtgagtt atcgtcactg
     1741 cgtgctgcgc cttcaaaggt aaaatcgccg acttgttgca gcccggtcag atagatgccg
     1801 gtattacgtt gatcatatcc atcctcaaca taacctgtac ccggcgtcgt agtctgtttc
     1861 tgccagtcga cacccgcacc aatactaccg tgaccaacga tgacattgtt tgcccactgg
     1921 acggtgtatt gcttcatctc atcgagcgtc gccgacgaat cataacgacc ataatgggga
     1981 tcgtagttgt aatctttgct atggctatag ctggtaatga gttgtgattt aatcagttcg
     2041 ccgttatagc gcagcccggc gtcccaactt tggctataga gtttacgggt atcgagcaac
     2101 ggtgaaccgg gagaataata cacgtcataa ttggtacggt tatcatagcc atagccgcgc
     2161 acaaagccgc tccaggcatc agtaaagtta tgctccagcg cgccataaag cgttttactt
     2221 aaaaaaccat cgttatctgt ctgcgcttgc gttccggtat taccataggc aacaacatca
     2281 taaccatgag tatgggcata atcgcccaac agcgttaccc gtgtcttatc ccccagttgt
     2341 tgctgcgtag agacatcata gttctgataa ctattgcttc cccaccctgc tgaaatttcc
     2401 gttccgggtt catcgcgcgt cgtgatgata ttcaccaccc cgcctattgc atcggaacca
     2461 taaacagcgg agcgcggccc acggatatat tcaacacgct ggacaagcgc acgcaatagg
     2521 gaactggcta aggtcggcag aaccactccc ccccgccaga ttcaggcgta cgccatcaat
     2581 taacaccaac acatgactgg catttgtacc tcgaataaaa atagatgaga gctgacctga
     2641 accgccgttt tgggtgatat cgacgcccgg aagacggcgc agcacatcat tgaccgaggt
     2701 cgactgccag cggtcgatat cctgacgggt cacaacggtg gttggtgcaa gcacagtgct
     2761 gcgcggctgt tcaaaacggt tagcagtaac gacgagagta tccgggctgg tatcctgtgc
     2821 ccaagcggaa aaggctgtga cagaacacgc cgtcagcagc gaagcttttt taatcattgt
     2881 aaagcatcca caatagaaga aggatgccgc aggtttcatc aatattacgc gatgatgaga
     2941 cgttggccgg caggtcttcg ggcttggagg ggtatctaag atactaagag atgatgactt
     3001 cccaccggat ggcagtgtcc gcataacgca atcatcgcac ctttccttac cgctgcgcgt
     3061 cagctccaga ttcgcactgg attccctatt aactcacagg accggcaagt ggatgctaca
     3121 ggttgtaaca agttactgtc cagacgtagc tcacaaatag gaattcatca agatctggac
     3181 atctgatgag caatccctac aatcgccgcg tactttaatt tttcaggata catcatgacc
     3241 cccgaacacc ttccaacaga acagtatgaa gcgcagttag ccgaaaaagt ggtacgtttg
     3301 caaagtatga tggcaccgtt ttctgacctg gttccggaag tgtttcgctc gccggtcagt
     3361 cattaccgga tgcgtgcgga gttccgcatc tggcacgatg gcgatgacct gtatcacatc
     3421 attttcgatc aacaaaccaa aagccgtatc cgcgtggata gcttccccgc cgccagtgaa
     3481 cttatcaacc agttgatgac ggcgatgatt gcgggtgtgc gtaataatcc cgttctgcgc
     3541 cacaagttgt tccagattga ttacctcacc acgctgagta atcaggcggt ggtttccctg
     3601 ctataccata agaagctgga tgatgagtgg cgtcaggaag cggaggccct gcgcgatgca
     3661 ctgcgcgcgc agaatctgaa tgtgcatctg attggtcggg caacgaaaac caaaatcgag
     3721 ctggatcaag attacatcga cgagcgtctg ccggtcgcag ggaaagagat gatctaccgt
     3781 caggtagaaa acagctttac ccagccgaac gcggcgatga atattcagat gctggaatgg
     3841 gcgctggacg taaccaaagg ctcaaaaggc gatttactgg agctgtactg cggcaacggt
     3901 aacttttcat tagcgctggc gcgcaatttt gatcgggtat tagccaccga aatcgctaag
     3961 ccgtcggttg ctgctgcgca atacaacatc gcagctaacc atattgataa cgtacaaatt
     4021 attcgtatgg cggcagaaga atttactcag gcgatgaatg gtgtgcgcga gtttaaccgc
     4081 ctgcaaggga tcgacttaaa gagttatcag tgcgaaacca tttttgtcga cccaccgcgc
     4141 agcggtctgg acagtgaaac cgagaaaatg gtgcaggcgt atccgtgtat tttgtacatc
     4201 tcctgtaacc cggaaacgtt atgcaagaat ctggaaacat taagccagac gcacaaggtc
     4261 gaacgtctgg ctctgtttga tcagttcccc tacacgcacc atatggagtg cggcgtatta
     4321 ctgaccgcga agtaaaaccc atgccggatg cgccagcatc cggcataata ccgattactc
     4381 agcaacttcc tgcttacggt tacgcatctt cgcgccaatc cagaacacca taatgacgga
     4441 gagtactgcc gggaagaagt tagagccgat atccggatat tccgcacgaa ctaccgtgct
     4501 gtacagcagt acgccgagaa taaaacaggc agctgccaga cccggcaagc ctaccggcat
     4561 agtgcgatta agataacgtt gatgcaggca gtaaaccgtc agcaccaggg aaataatcgg
     4621 gaatacagaa aatggcacaa tggagctaaa cagcgctgcg aaagtaccat taatcgataa
     4681 gccagcaact aacgccagca gcagcgtacc tctatcttga tttgcttgtt tcattactcg
     4741 tccttcacat ttcccggaat aattgcggtt ttctcttgtt cacggcgata ccagtaataa
     4801 gcccctttcg aaatcattcg cagttgcagt accagtcgct cttctaattg ccgacgttgt
     4861 tcgacgccga cgtccaacgc ctcggcaccc gcactgaaga caattgtcac cattgcttcg
     4921 gcttgcgctt cagtaaacgc acgcggcata tggttttcga gttccagata gtccgcaagt
     4981 tccgcaatga agtgctgaat ttcacgcgca acggcggcac gaaacgcagc ggaggtgccg
     5041 gagcgttccc gcaataataa ccggaaggcg ttaggattat taccgatgaa ctccataaat
     5101 gtggagaccg aggtgcggat cacactcccg cctttggcga tacgctgacg cgcctggcgc
     5161 atgagttggc gtagcattaa accgctctca tcaaccatgg tcagacccag ttcgtctacg
     5221 tcgcggaaat gccgataaaa agaggtggga gcaatgcccg cttcacgcgc cacttcacgc
     5281 aaactcaggc tggcgaagct gcgttcagca cttaattggc taaatgcggc ttccaccagc
     5341 gaacggcggg ttttttcttt ttgttgcgct cttatgccca tcacgatgtc tgaatccttg
     5401 ccaaaagtac tgctggcact ataccagaga atgaacatac tggattgctc cagtattgtg
     5461 aatgaacggt aacgcaataa aacatattta ctggccggtt cttttacgta cagcggaaac
     5521 ctgccgctta aacggagagt atcgtcgata aaaatccaat aaaacgtcag ggcaaaagta
     5581 agaaacagac aaagcaaagg ccgctcagga tatagccaga taaatgacgg ggatcaattg
     5641 gcttacccgc gataaaatgt taccattctg ttgcttttat gtataagaac aggtaagccc
     5701 taccatgcca cattcctacg attacgatgc catagtaata ggttccggcc ccggcggcga
     5761 aggcgctgca atgggcctgg ttaagcaagg tgcgcgcgtc gcagttatcg agcgttatca
     5821 aaatgttggc ggcggttgca cccactgggg caccatcccg tcgaaagctc tccgtcacgc
     5881 cgtcagccgc attatagaat tcaatcaaaa cccactatac agcgaccatt cccgactgct
     5941 ccgctcttct tttgccgata tccttaacca tgccgataac gtgattaatc aacaaacgcg
     6001 catgcgtcag ggattttacg aacgtaatca ctgtgaaata ttgcagggga acgctcgctt
     6061 tgttgacgag catacgttgg tgctggattg cccggacggc agcgtcgaaa cactaaccgc
     6121 tgaaaaattt gttattgcct gcggctctcg tccatatcat ccaacagatg ttgatttcac
     6181 ccatccacgc atttacgaca gcgactcaat tcttagcatg caccacgaac cgcgccatgt
     6241 acttatctat ggtgctggag tgatcggctg tgaatatgcg tcgatcttcc gcggtatgga
     6301 tgtaaaagtg gatctgatca acacccgcga tcgcctgctg gcatttctcg atcaagagat
     6361 gtcagattct ctctcctatc acttctggaa cagtggcgta gtgattcgtc acaacgaaga
     6421 gtacgagaag atcgaaggct gtgacgatgg tgtgatcatg catttgaagt cgggtaaaaa
     6481 actgaaagct gactgcctgc tctatgccaa cggtcgcacc ggtaataccg attcgctggc
     6541 gttacagaac attgggctgg aaactgacag ccgcggacag ctgaaggtca acagcatgta
     6601 tcagaccgca cagccgcacg tttacgcggt gggcgacgtg attggttatc cgagcctggc
     6661 atcagcggcc tatgaccagg ggcgcattgc cgcgcaggcg ctggtaaaag gcgaagccac
     6721 cgcacatctg attgaagata tccctaccgg catttacacc atcccggaaa tcagctctgt
     6781 gggcaaaacc gaacagcagc tgaccgcaat gaaagtgcca tatgaagtgg gccgcgccca
     6841 gtttaaacat ctggcacgcg cacaaatcgt cggcatgaac gtgggcacgc tgaaaatttt
     6901 gttccatcgg gaaacaaaag agattctggg tattcactgc tttggcgagc gcgctgccga
     6961 aattattcat atcggtcagg cgattatgga acagaaaggt ggcggcaaca ctattgagta
     7021 cttcgtcaac accaccttta actacccgac gatggcagaa gcctatcggg tagctgcgct
     7081 aaatggctta aaccgcctgt tttaacactt tatcgaaatg gccatccatt cttgcgcgga
     7141 tggcctctgc cagctgctca tagcggctgc gcagcggtga gccaggacga taaaccaggc
     7201 caatcgtgcg gcgaggttcc ggcttaatac acggcaaata aacaacccca tcgcgtttgc
     7261 gctccggcgg cacagccagc gcaggcagta aagtgatccc gctacctgcc gccaccatgt
     7321 tacgcagtgt ctccaggctg gtcgcgcgga agtgtgtatc ttcatccgcc ccggcttcaa
     7381 agcagaaacc cattgcctga tcgcgcaaac agtgaccatc ttccagcatc agcagttttt
     7441 cccctgccag atcggccatc ggtacgcatt cgcggttcgc ccacgggtga tcttcataga
     7501 tagccagcaa cattggctca tcaaacaacg gcacttcaat gaatgcttcg ctctctttca
     7561 ccagcgcgag gatcacgcaa tcgagtttgc cgctgtccag ttgcgccagt aactggtggg
     7621 tctgtgcttc atgcagatac atttccagct ttggaaatgt ctggtgcagc atcgggataa
     7681 tatgcggcag caggtacggt ccaaccgtag gaatcaaacc aatatgcagc ggtccggaca
     7741 tcgtctcgcc ctgctggctt gccatctctt taaggacttt cacctcacgc agcacggtac
     7801 gcgcctgatc caccagcagc attcccgcct gggtgaacaa cactttacgg ctggtccgct
     7861 ccagcaacat cacgcccagc tcatcttcca gcttacgaat ttggccgcta agcgtcggct
     7921 ggctaacgtg gcaggaatct gccgcacgcc gaaaatggcg gtgttcagcc aatgccacca
     7981 ggtactcaag atcacgaata ttcattatcc atcctccatc gccacgatag ttcatggcga
     8041 taggtagaat agcaatgaac gactatccct atcaagcatt ctgactgata attgctcaca
     8101 gaaacggagc ggcacctctt ttaacccttg aagtcactgc ccgtttcgag agtttctcaa
     8161 ctcgaataac taaagccaac gtgaactttt gcggatctcc aggatccgct tttttttgcc
     8221 ataaaaaagc ccggcgataa gccaggctca aatttgtaca tataaatgtt cttaccccaa
     8281 ccgcgcctgc gcaaaagcaa tcgcttgggc cacctgctgc ggtgagacac cgccttttgc
     8341 cgcacgcttg tcgaggcacg attgtagcga cagaatcgga tagacatctt cgccaatcac
     8401 gtggctgaat ttctgcaact cgtcgagcgg cagatcttcc agcggtttgc cctgacgaat
     8461 ggcttccacc accgcttcac ccacgatatg gtgcgcctcg cggaaaggta cgcctttcgc
     8521 caccaggtaa tccgccagtt cggtggcgtt ggcgtaaccc tgctgagccg cttcctggca
     8581 acgtggacgt ttcacctgaa tgccgtccag caccagcgcc gccatatgca ggcagtccag
     8641 ccaagtatcg agcgcgtcga acagaccttc tttgtcttcc tgcatatctt tgttgtaagc
     8701 cagcggcaaa cctttcagcg tcatcatcat gccggttaac gcaccctgca cccgaccgca
     8761 tttaccgcga atcagctcca gcgcatccgg gtttttcttc tgcggcatta atgatgaacc
     8821 ggaagtcacg cggtcagaaa gctccacaaa ccccgcttcg ccggtgttaa agaaaatcag
     8881 atcttcagca aaacgcgaca gatgcaccat gccgatagcg gcagccgaca gcagttccaa
     8941 cacatggtca cggtcagaaa cgctgtccag actgttacgg gtcgccgaag caaagcccag
     9001 ccagcctgct aactgttcac ggtcgatttc ataggccgtt cccgccagcg cgccacagcc
     9061 taatgggctg acatccagac gcttaagcgc atcctgcaaa cggctttcat cacgcgccag
     9121 catctcaaca taggccaggc accagtgcgc gaacgtcacc ggctgggcgc gttgcaggtg
     9181 agtgtaacct ggcattaccg cgtcctgatt gttttgtgcg gtttccacca gcgccgattg
     9241 cagctgccgg ttagccgtca gtaactcgct aacggtatct ttgcaccaca gtttcaggtc
     9301 agtcgctacc tgatcattac ggctacgccc ggtatgcagc tttttgccta actggcccac
     9361 tttgtcgatc agtttgcctt ccacccagct atggatatct tcggcgtcgc tttcaaggat
     9421 ttgttgtggc ctggcgcgaa catcttccag caacacgttc agcgcctctt ccagttgcgc
     9481 ctgctcttct gcggttaaca cgccgaccgt tactagggct ttggaccagg ccacagagcc
     9541 aacaatatcc tgctccgcca gacggtaatc aaagcgcagt gagtcgttga attgtttgaa
     9601 ccgttgatct gctgcctggg taaaacgccc gccccaaagt gccataactc tgtttcctta
     9661 ttttgaaatt caatgccgga aagctgcgcc tccggctaac aaaacttaag ctaaaatccg
     9721 cgtacccatc ggcataccgt taaacagtgc cggaagctgc tccgcatgac gccaggaggc
     9781 gatatctacc ggacggccca gcgtgcgggc cgcatccagc gccgcgttca ctttcactat
     9841 catgccgtca gtaataatgc cctgctcaat cagttgttct gctttcgcgg cggtcatttc
     9901 ggcaatgcgt tgccctttgc cgtcgagaat gccgctgacg tcggagagca aaatcagatc
     9961 cgcgcccagc gttgccgcca gcgccgttgc cgcctggtcg gcattgacgt tcatcagttg
    10021 cccttcgtct gttacgccaa tggagctgac caccggcaga taaccgttct ccagcaagga
    10081 gttgataagc ttaggcgaac ctggctgcgc cagtccaaca tgacctaact cttcatcaag
    10141 ctgggtcact ttgacgctgt cgccatcacc gagaaacaaa cctacggccg caatctgatg
    10201 tttcttcgcc catgccaaca gggttttatt tgccgttccc gccagtgctc cggtgataat
    10261 gtctatctga tcagcaggcg tcacccgcag gccgtttttc tttttcaccg gcagattcag
    10321 ccctttcatc agctcatcca ccacgcaacc gccgccgtgc acaatcacca gcggacgctg
    10381 atgtgactca cgataattca ccagtgcgct aaacagacgt tccagcgcct cttcactatc
    10441 cagcagtacg ccgcccagtt tgataattaa tggattcatc attgcaccct taaataagag
    10501 actgcgtttc cgcatagccg aaacgaatat tggcgcactg taccgcttgt gccgccgcgc
    10561 ctttcagtaa gttgtcttcg gtcgccacaa taatcagatg ctcgccctga acggcaaacc
    10621 cgatatcgca aaatggcagc ccaacgacat ttttcagcgc cggaacgcct ttgtcataca
    10681 gccgcaccag cggtttatgg gcatacgcct gctgtaacac ttgcgcgact tgcgcctggg
    10741 tcacacccga tttcaggcgg caggtaatgg tttcgagaat gccgcgcggg aaattgccca
    10801 gatgtggggt gaagataacg tcagcaccga ggtgtgtggc gatctctggt tgatggcgat
    10861 gagtaaagac gccatacggt tgcaggctaa cttcacaaaa actatttgaa atcgctgcct
    10921 tacgtcctgc accgctcacg ccgctggtgg cgttgatcgc cggccactga ttgaggtcaa
    10981 gaagatcggc atcaatcaac ggtttcagcg ccagctgtgc cgccgtcgga taacagcctg
    11041 gcaccgcaat caaattcgct tcttttaatt tattaccgca ccactccgcc agaccgtagg
    11101 ctgcctgttc cagctgttcc gggtattgat gggtaaagcc gtaatatttt tcatagaagg
    11161 tggcgtcgtt aacacgaaac gcgccggaaa ggtcgaacac cacgcagccc gcttcaagaa
    11221 actgcggcgc taaatcgtgg ctaacttcat gggcggtggc gagaaacact acgtccaccc
    11281 ctgggctaaa ctcgctgata tccgacatcg gctgcaacgg cagctcaacg atgcctttta
    11341 gctgcggatg caaatcggag attaactttc ccgcatcatt gctttgcgct gaaacagtca
    11401 aagcggttat gttcatatgc ggatggcgat ttacataggt cactagctct gcgccagcgt
    11461 agccgctggc acccacaatc agcgtattca acatcggggc tattcacctt cttatgtctg
    11521 gttgccaggt taaacgtaaa acattcacct tacggctggt gggttttatt acgctcaacg
    11581 ttagtgtatt tttattcata aatactgcat gaatattgat actatcatga ccagaggtgt
    11641 gtcaacaatg aaaaacaaat taccgccatt tatcgagatt taccgcgctc tgattgccac
    11701 accttcaata agcgctacgg aagaggcact cgatcaaagc aatgcagatt taatcactct
    11761 gctggcggac tggtttaaag atttgggctt caatgtggaa gtgcagcctg ttccaggaac
    11821 tcgcaacaaa ttcaatatgc tggcaagtat cggacagggg gctggcggct tgttgctggc
    11881 ggggcatacc gatacggtgc catttgatga cggtcgctgg acgcgcgatc cgtttacact
    11941 gacggagcat gacggcaagc tttacggctt aggcaccgcc gacatgaaag gcttttttgc
    12001 gtttatcctt gatgcgctac gcgatgtcga cgtcacgaaa ctgaaaaaac cgctctacat
    12061 tctggcgact gctgatgaag aaaccagtat ggccggagcg cgttattttg ccgaaactac
    12121 cgccctgcgc ccggattgcg ccatcattgg cgaaccgacg tcactacaac cggtacgcgc
    12181 acataaaggt catatctcta acgccatccg tattcagggc cagtcggggc actccagcga
    12241 tccagcacgc ggagttaacg ctatcgaact aatgcacgac gccatcgggc atattttgca
    12301 attgcgcgat aacctgaaag aacgttatca ctacgaagca tttaccgtgc cataccctac
    12361 gctcaacctc gggcatattc acggtggcga cgcttctaac cgtatttgcg cttgctgtga
    12421 gttgcatatg gatattcgtc cgctgcctgg catgacattc aatgaactta atggtttgct
    12481 caacgatgca ttggctccgg tgagcgaacg ctggccgggt cgtctgacgg tcgacgagct
    12541 gcatccgccg atccctggct atgaatgccc tccgaatcat caactggttg aagtggttga
    12601 gaaattgctt ggagcaaaaa ccgaagtggt gaattactgt accgaagcgc cgtttattca
    12661 aacgttatgc ccgacgctgg tgctcggtcc gggttccatc aatcaagctc atcagcctga
    12721 tgaatatctg gagacgcggt ttattaaacc cacccgtgag ttgattatcc aggtaattca
    12781 ccatttttgc tggcattaaa acgtaggccg gataaggcgc tcgcgccgca tccggcaccg
    12841 ttgccaaact ccggtgccgc aataatgtcg gatgcgatgc ttgcgcatct tatccgacct
    12901 acacctttgg tgttatgtat ggcgattttt taacatttcc ataagttacg cttatttaaa
    12961 gcgtcgtgaa tttaatggcg taaattcctg ctatttattc gtttgctgaa gcgatttcgc
    13021 agcatttgac gtcaccgctt ttacgtggct ttataaaaga cgacgaaaag caaagcccga
    13081 gcatattcgc gccaatgcga cgtgaaggat acagggctat caaacgataa gatggggtgt
    13141 ctggggtaat atgaacgaac aatattccgc attgcgtagt aatgtcagta tgctcggcaa
    13201 agtgctggga gaaaccatca aggatgcgtt gggagaacac attcttgaac gcgtagaaac
    13261 tatccgtaag ttgtccaaat cttcacgcgc tggcaatgat gctaaccgcc aggagttact
    13321 caccacctta caaaatttgt cgaacgacga gctgctgccc gttgcgcgtg cgtttagtca
    13381 gttcctgaac ctggccaaca ccgccgagca ataccacagc atttcgccga aaggcgaagc
    13441 tgccagcaac ccggaagtga tcgcccgcac cctgcgtaaa ctgaaaaacc agccggaact
    13501 gagcgaagac accatcaaaa aagcagtgga atcgctgtcg ctggaactgg tcctcacggc
    13561 tcaccctacc gaaattaccc gtcgtacact gatccacaaa atggtggaag tgaacgcctg
    13621 cttaaaacag ctcgataaca aagatatcgc tgactacgaa cacaaccagc tgatgcgtcg
    13681 cctgcgccag ttaatcgccc agtcatggca taccgatgaa atccgtaagc tgcgtccaag
    13741 cccggtagat gaagccaaat ggggctttgc cgtagtggaa aacagcctgt ggcaaggcgt
    13801 accaaattac ctgcgcgaac tgaacgaaca actggaagag aacctcggct acaaactgcc
    13861 cgtcgaattt gttccggtcc gttttacttc gtggatgggc ggcgaccgcg acggcaaccc
    13921 gaacgtcact gccgatatca cccgccacgt cctgctactc agccgctgga aagccaccga
    13981 tttgttcctg aaagatattc aggtgctggt ttctgaactg tcgatggttg aagcgacccc
    14041 tgaactgctg gcgctggttg gcgaagaagg tgccgcagaa ccgtatcgct atctgatgaa
    14101 aaacctgcgt tctcgcctga tggcgacaca ggcatggctg gaagcgcgcc tgaaaggcga
    14161 agaactgcca aaaccagaag gcctgctgac acaaaacgaa gaactgtggg aaccgctcta
    14221 cgcttgctac cagtcacttc aggcgtgtgg catgggtatt atcgccaacg gcgatctgct
    14281 cgacaccctg cgccgcgtga aatgtttcgg cgtaccgctg gtccgtattg atatccgtca
    14341 ggagagcacc cgccataccg aagcgctggg cgagctgacc cgctacctcg gtatcggcga
    14401 ctacgaaagc tggtcagagg ccgacaaaca ggcgttcctg atccgcgaac tgaactccaa
    14461 acgtccgctt ctgccgcgca actggcaacc aagcgccgaa acgcgcgaag tgctcgatac
    14521 ctgccaggtg attgccgaag cgccgcaagg ctccattgcc gcctacgtga tctcgatggc
    14581 gaaaacgccg tccgacgtac tggctgtcca cctgctgctg aaagaagcgg gtatcgggtt
    14641 tgcgatgccg gttgctccgc tgtttgaaac cctcgatgac ctgaacaacg ccaacgatgt
    14701 catgacccag ctgctcaata tcgactggta tcgcggcctg attcagggca aacagatggt
    14761 gatgattggc tattccgact cagcaaaaga tgcgggcgtg atggcagcgt cctgggcgca
    14821 atatcaggca caggatgcat taatcaaaac ctgcgaaaaa gcgggtattg agctgacgtt
    14881 gttccacggt cgcggcggtt ccattggtcg cggcggcgca cctgcccatg cggcactgct
    14941 gtcacaaccg ccaggaagcc tgaaaggcgg cctgcgcgta accgaacagg gcgagatgat
    15001 ccgctttaaa tatggtctgc cagaaatcac cgtcagcagc ctgtcgcttt ataccggggc
    15061 gattctggaa gccaacctgc tgccaccgcc ggagccgaaa gagagctggc gtcgcattat
    15121 ggatgaactg tcagtcatct cctgcgatgt ctaccgcggc tacgtacgtg aaaacaaaga
    15181 ttttgtgcct tacttccgct ccgctacgcc ggaacaagaa ctgggcaaac tgccgttggg
    15241 ttcacgtccg gcgaaacgtc gcccaaccgg cggcgtcgag tcactacgcg ccattccgtg
    15301 gatcttcgcc tggacgcaaa accgtctgat gctccccgcc tggctgggtg caggtacggc
    15361 gctgcaaaaa gtggtcgaag acggcaaaca gagcgagctg gaggctatgt gccgcgattg
    15421 gccattcttc tcgacgcgtc tcggcatgct ggagatggtc ttcgccaaag cagacctgtg
    15481 gctggcggaa tactatgatc aacgcctggt agacaaagca ctgtggccgt taggtaaaga
    15541 gttacgcaat ctgcaagaag aagacatcaa agtggtgctg gcgattgcca acgattccca
    15601 tctgatggcc gatctgccgt ggattgcaga gtctattcag ctacggaata tttacaccga
    15661 cccgctgaac gtattgcagg ccgagttgct gcaccgctcc cgccaggcag aaaaagaagg
    15721 ccaggaaccg gatcctcgcg tcgaacaagc gttaatggtc actattgccg ggattgcggc
    15781 aggtatgcgt aataccggct aatcttcctc ttctgcaaac cctcgtgctt ttgcgcgagg
    15841 gttttctgaa atacttctgt tctaacaccc tcgttttcaa tatatttctg tctgcatttt
    15901 attcaaattc tgaatatacc ttcagatatc cttaaggaat tgtcgttaca ttcggcgata
    15961 tttttttcaa gactggttct tactatgcat tccacagaag tccaggctaa accccttttt
    16021 agctggaaag ccctgggttg ggcactgctc tacttttggt ttttctctac tctgctacag
    16081 gccattattt acatcagtgg ttatagtggc accaacggca ttcgcgactc gctgttattc
    16141 agctcgctgt ggttgatccc ggtattcctc tttccgaagc ggattaaaat tattgccgca
    16201 gtaatcggcg tggtgctatg ggcggcctct ctggcggcgc tatgctacta cgtcatctac
    16261 gggcaggagt tctcgcagag cgttctgttt gtgatgttcg aaaccaacac caacgaagcc
    16321 agcgagtatt taagccagta tttcagcctg aaaattgtgc ttatcgcgct ggcctatacg
    16381 gcggtggcag ttctgctgtg gacacgcctg cgcccggtct atattccaaa gccgtggcgt
    16441 tatgttgtct cttttgccct gctttatggc ttgattctgc atccgatcgc catgaatacg
    16501 tttatcaaaa acaagccgtt tgagaaaacg ttggataacc tggcctcgcg tatggagcct
    16561 gccgcaccgt ggcaattcct gaccggctat tatcagtatc gtcagcaact aaactcgcta
    16621 acaaagttac tgaatgaaaa taatgccttg ccgccactgg ctaatttcaa agatgaatcg
    16681 ggtaacgaac cgcgcacttt agtgctggtg attggcgagt cgacccagcg cggacgcatg
    16741 agtctgtacg gttatccgcg tgaaaccacg ccggagctgg atgcgctgca taaaaccgat
    16801 ccgaatctga ccgtgtttaa taacgtagtt acgtctcgtc cgtacaccat tgaaatcctg
    16861 caacaggcgc tgacctttgc caatgaaaag aacccggatc tgtatctgac gcagccgtcg
    16921 ctgatgaaca tgatgaaaca ggcgggttat aaaaccttct ggatcaccaa ccagcagacg
    16981 atgaccgccc gcaataccat gctgacggta ttttcgcgcc agaccgacaa gcagtactac
    17041 atgaaccagc aacgtacgca gagtgcgcgt gaatacgaca ccaacgtgct gaagccgttc
    17101 caggatgtgc tgaatgaccc tgcgccgaag aaactgatca tcgttcatct gctgggtacg
    17161 catatcaaat acaaataccg ctacccggaa aatcagggca agtttgatgg caataccgat
    17221 catgttccgc caggattaag cgcagaagag ctggaatcat ataacgatta tgacaacgct
    17281 aacttgtata acgatcatgt ggttgccagc ctgattaaag actttaaagc ggcagacccg
    17341 aacggattcc ttgtttactt ctctgaccac ggtgaagagg tttacgacac gccgccgcac
    17401 aaaactcagg ggcgtaacga agacaacccg acgcgccaca tgtacaccat tccgttcctg
    17461 ctgtggacgt cggaaaaatg gcaagcgact catccccgtg atttctcaca ggatgtcgat
    17521 cgtaaataca gcctggcgga actgatccac acctggtcag atttggcggg cttatcttac
    17581 gacggttacg atccaacccg ttcagtggtg aatccgcagt tcaaagaaac tacccgctgg
    17641 attggtaacc cgtacaagaa aaacgcgctg atcgattacg acactctgcc gtatggcgac
    17701 caggtaggta atcagtaatt atcagccagg cgctatttgc cggatgcgac gcttgacgcg
    17761 tcttatccgg cctacagatc gcggcggtag gctggataag gcgtttacgc cacatccggc
    17821 aatacaactg ccgcaatgtt tacatcgaac tcccctcagg ccacactttt caggtggcct
    17881 tttttaataa tgccagttac tgttttcccg tctacatacc taagggaata acatgtatca
    17941 cgacatcagc tatctgctct cccgcctgat caacggcccg ctgtccctgc gccagattta
    18001 ctttgccagc agtaacggcc cggtgcccga tcttgcgtat caggtcgatt ttccacggct
    18061 ggaaattgtg ctggaaggtg agtttgttga taccggcgct ggagcaacgt tagttcccgg
    18121 cgatgtgctg tacgttgccg ctggtggctg gaatttccca caatggaaaa cacccgctac
    18181 cacctttagc gtgctgtttg gcaaatagca actcggcttc agcgtcgtgc aatgggatgg
    18241 caaacaatat caaaatctgg cgaagcaaca cgtcgcccga cgcggcccac gtataggttc
    18301 ttttctgcta caaacgctca atgaaatgca aatgcagccg caggagcagc aaacggcaag
    18361 gcttatcgta accagcctgc ttagccactg ccgcgatttg ctcggcagcc aaatccagac
    18421 cgcctcacgc agccaggcac tatttgaagc tattcgcgat tatatcgacg aacgctatgc
    18481 ctccgcgctt acccgcgaat ctgtcgcaca ggcattctat atttcaccaa actatctctc
    18541 gcacctgttt caaaaaacgg gggccattgg ttttaacgaa tacctgaatc acacgcgact
    18601 ggagcacgct aagacgttat tgaaaggcta tgacctgaag gtaaaagaag tggcgcacgc
    18661 ctgcggcttt gtcgacagca actacttctg ccgtctgttt cgtaaaaaca ccgaacgctc
    18721 gccgtcggaa tatcgccggc agtaccacag ccaactgaca gaaaaaccga ctactccaga
    18781 ataagatggg tttgctgcgg cgcagaaagc actttgcgca ccgcgctcat tacccgctgc
    18841 ggctcacgca ggaatgcgta gatgctgcat tgcacatagc ggcaatgttc aaatcgctcg
    18901 gcaccggcaa gctcgatatc cgtaatcaac agagcaacat ccgcccgacg gatatcctcg
    18961 tccgcgaaac gattctccgt tcccagcgcg ccctgagttt caatgctgac gccccacttc
    19021 tctaactggc acaacttttc cagccgttcc gccgccatat aagtatgcgc cacgccgctt
    19081 acgcaggcgg ttactgccac caggtatgcc attttaacct cccacggtaa cctgaaatcc
    19141 ggcccgttct gccatttcgc gcatcgttgc cacatcggct gatgacggcg cagcaacatc
    19201 cttcatcgac catgttttcc ccagcaggcg gtatttcggc tcgccgtact gatgaaacgg
    19261 caacagatgg atctgcctga tattcagcgg gatcagcacg tccagcgcct gctgcatatt
    19321 ctcccggctg agtgtgaaac cggggatcag cggcaaacgc gggatcacgt tgacaccctc
    19381 actcaccagc aaacgcaggt tctccagtac gcgtggcagg ttcatcttca ccacatcccg
    19441 cgcctgagtc gcgtccataa tttttaaatc gaacaacact tcatcgcaca atttcgccag
    19501 cggtaacagc ttgctggctg gtgcgtctcc ggcagtttca atggcacatg agacacccca
    19561 cagccgcagt cgctgtaaaa aacgggtagc aaactccgcc tgcattaaca cttcgccgcc
    19621 agaaagcgtg acgccgccgc cggacgtgcg aaaaaaaatg tcatctttca tcacttcccg
    19681 ttccagagcg tcaaggctga tatcgcgacc aatccgttca aacgccccgg aggggcattc
    19741 atccgcatca cgcaaacatt tcgcacagtg cagacatttc gcctctctgc gtaccgtctg
    19801 gattttgccg gagatcgact ccggattagc acaccacggg caaagatgcg gacagccttt
    19861 aaaaaagacc accgtacgaa tgccctcgcc gtcattcagt gaataacgct gaatgttgaa
    19921 aatgcgcgcc acatcattgc ggcgcgtttc cacaacgtta cagctgatgc gctgtccggc
    19981 ggatgatgtc atcctggatc tccttcgaca gttcgacaaa gaaggcgctg tatccggcaa
    20041 cgcgcaccac cagcccggca taatcttgtg ggcgctgttg cgcttcccac aacgtgtcgg
    20101 cgttcaccac gttaaactga atatgctgca acttaagctg ggtaaacgcc cgtaagaagt
    20161 cggccagttt gcgtaatccc gcttcacctt ccagggtcgc cggagtgaat ttcacgttca
    20221 gcaacgtacc gttagacagc agcgtattat cgagcttact gactgacttc agtaccgctg
    20281 ttggcccttg ttcgtcctgg cccagcatag gtgacaagcc gccgtctgcc agctgttctc
    20341 cggcaaaacg accgtctggc gtcgcgccaa ccaccgatcc caacgggacg tgagcagaaa
    20401 cggtatacga tcccggcgtg aagtaaccac cgcacgggtt ctggtatttt tccacttctt
    20461 tgcagtagtg gcgcaacagt tcggcgctaa tgttatccac ctcgtcgata tcgttaccat
    20521 atttctcaaa gcggttaatt aagcgagcgc ggactttttc gccttctggc gttgcaaagt
    20581 tggcttttaa taccgacagc aattcgtcaa aacttaaacg ctgttgctca aaaaccatcc
    20641 ctttcaacgc atggagagaa tcgctcaggt tggcgatacc gatcccctgt acgccggaga
    20701 agttataacg cgcgccgcca tcggtaatat cgcgaccttt ttccagacaa tcgctgataa
    20761 aagacgagag cagcggtaca ggtgcccagt cgcgatggcc gatatcacaa atattgctgc
    20821 cctcaaccat cagggtgatg tagtggctga tcttggcgcg gatctgctcc agtaaacctt
    20881 cataagtcag cgcagcattg ccttcatttt catgcaggca gatttccatc actttcagca
    20941 gattaaacat cgcgatgtca tgcaagccgt aggttctgcc gggaatagat aattccacac
    21001 agcccactac ggaatagtcg cgcgcatctt ccagcgaaac gccacggttg aggaacactg
    21061 gtaccaccac ttcatcgtta aagatttgcg gaataccggt gccgaggcga atggtttcgg
    21121 cggttttcat caggaatggc gtgtcgatca aggcgttagt gcgcacgccg aggttcggtt
    21181 gcggtaattg cacgctttga taggcgtcaa ggcaaaggaa cgaaagcacg ttcaccgcgc
    21241 tacgtccgtt ctcggttaac ccgccgagca gtgcggtata gccggtcggg aaacctgcga
    21301 aataacgcgc gctgctggtg gagcgcaaca gcacgatgtc gttgcatttc acccataaag
    21361 attcgagcag ttctttcagg aacgccggat cttcgccctg ggttaaagat gcctgataga
    21421 acggcaacat atactggtcg aagcgcccta aagacagcga actggcgttg gattcgtatt
    21481 gcagaatgat gttcatgtac cagaataact ggcacgcctg ccagaacgtc tgcggcttat
    21541 gttcggcgtt atggcgagag atctccgcaa tagtcagcag ttcttcgcga cgctgggcat
    21601 ctgtgcagtt tgccgccatc gtttccgcca gtacggcgta acgcaaaatg tgtttctgcg
    21661 aggcttccag cagtaacagc gctgcctgat aaaagtgatt ctccggctgt tgctgacaat
    21721 gttgctgcat ctgtgccacc aactccccca gcccgtgatt caacaggcgt gggtaatcaa
    21781 taataatgtg cccctggcct ttatccgtct ggttaatgct gaaaatctgc gtgctggtcg
    21841 cggcttttac ttcatccgtc atctgcccgt tgatgaaatc tttcatcgaa cgtttttccc
    21901 agtacgggaa caactcttca cgatagatac gtttatcttc ttcgctgata gcaaagcggt
    21961 cctgcggacg cgtcgggaat tgatccagct ctttcagcag ccagtaaggg tccatttccg
    22021 gcgacataat cccggcgcgc ggttttacgg tgcggttacc ggcaatcagt tcttcatcac
    22081 gaatcgaaat ttcaacatgt tcaaggatat acgctgttgc tttcgcccgg cgcaatatca
    22141 ccggttcgcc ttcggtttgc cgatggctgg cggtataaag cagcgcccgc tccagcgaga
    22201 tttcacgggt attggcaaac agtgcagttt tgaggcgaga gatacgattc gtcatgagga
    22261 actcctgtgg gaaagcgaac ccgcccttgc gagcgggaga agaacttaag cggtttgcgc
    22321 caggtgagct tcaattttgc tcataatggc gtcagcacgt tttactgcat cgctgatgtt
    22381 gacgcgcacg atggtcttgc cagcaaaacg ctcttcaaac ttgatgccga tatctttggt
    22441 cagaatcacc atatcagcgc tcgccacatc ttccgcagtc agttcatttt ccagaccaat
    22501 tgacccctgg gtttctactt tcacttccca gcctttcgct ttcgcggcac tttccagcgc
    22561 ctctgctgcc atataggtat gggcaacacc tgaaggacat gcggttactg caataatttt
    22621 cgtcatggct cgttcctcaa ttaattaatt tcaaaatcca aatccaggtc gtcttctttt
    22681 tcatcagtcg aagacccatt tttacgcgcc agacttttca gcacgttcac acaaacagcc
    22741 gtcaccactg ctccgacagc cactgctgcg atataaccca gcttgccttc aaccaccggc
    22801 agcacaatca gaccacccca gcctgcatag cactgcgcac cgaccagcgc cgcagttact
    22861 gcaccacaaa ctgaaccgac catgatggaa ggaatgacac gcagcggatc ggcagcggcg
    22921 aaaggaatcg ccccttcagt aacgccaaca cagcccatca ccagtgccgc tttgccggtt
    22981 tcgcgctctt ctgcggagaa atttttacga ccaatcagcg tcgccagccc catccccagc
    23041 ggcgggatac aaatacccac ggcagcgatg accaccacgg tataaacacc ctgagcaacg
    23101 caaatcagca tgaaggcata ggccactttg ttaaccggac cgcccatatc gaacgccagc
    23161 atcagaccca tgatcaccgc cagcataaca atgctgccct gctgcatccc ttgaagccac
    23221 tgagtcaggc tgttggtcaa cgcccctaca ggctcgccca agccccacat catgatgcct
    23281 gcggtaatca gtgtgccgac gataggaata atgaagatag gcatcaccga gcgcagaact
    23341 ttatgcaccg gaattttctt caggtaatgc accacgatgc cgccgataat cccggcgatc
    23401 agtgcaccaa agaagcccgc accaaagctg ttaccaacct aggcaccgat agcgcacgga
    23461 gccagcgcag aacgctctgc aatggagtaa ccaatgtaag cggcgaggaa aggcaccatc
    23521 agcgtcaaac ctgcaacgcc gatatcaaac agttttttca aattcggatc ggctacggca
    23581 tccggcactg cgcctttgcc atacaacatg acggaaaccg ccagcaaaat accgcccgat
    23641 accacgaagg gaatcatgtg tgaaacgccc gtcattaaat gctgacgggt atttttcagg
    23701 atctgcacca actcattcat aagctgctcc cgggcttgcg aaagcccatg tccatatttt
    23761 tgatggagga aacaataggc aatcgcaggc ggagcaaaca gtggataaaa aggccattta
    23821 ctggactttt gtaatatcag tacaaaaatg cgatccgcct cataacttgc gataaaccgg
    23881 aagcatgccg caaaacggcg tcttgtgaga cgcgtcgcaa attgacggtt acattacatt
    23941 tgtccagctt ttggcagatt tgtcacatgg caggccgttg ccgtgcgctc ttatcctgta
    24001 aacagaaaac cgtaccggga gagaggcaat ggccctgatt gtggaattta tttgtgagct
    24061 acctaacggc gtacatgcgc gtccggcaag ccacgttgaa acgctgtgta atactttttc
    24121 atcacaaatt gagtggcata acctgcgcac tgaccgcaag ggcaacgcca aaagcgccct
    24181 tgcgctgatt ggcaccgata cgctggcggg cgataactgc cagttactga tttccggggc
    24241 cgacgaacag gaagcgcacc agcgtttaag ccaatggctg cgcgatgaat tcccccactg
    24301 cgatgcgccg ctggcggaag ttaaatctga cgaactggaa ccactgccgg tttcactgac
    24361 caatctgaat ccgcaaatta tccgcgcccg caccgtgtgc agcggtagtg caggcggcat
    24421 tctgacgccg atctcttctt tagatctcaa tgcgctgagt aatcttcccg cagccaaaga
    24481 cgttgacgcc gagcaatccg cactggaaaa tggcctgacg ctggtactga aaaacattga
    24541 gtttcgtctg ctggatagcg acggtgctac cagcgcgata ctggaagctc accgatccct
    24601 ggctggcgat acatctttac gtcagcactt actggcaggc gtcagcgagg gattaagctg
    24661 tgccgaagcg attgtcgcca gtgcgaatca cttttgcgaa gagttcgccc gttccagcag
    24721 cagctacctg caagaacgtg ccctggacgt acgcgacgtc tgcttccagt tactccagca
    24781 aatctacggt gagcaacgct tcccggcacc gggcaaactg acgcagcccg ccatttgtat
    24841 ggctgatgaa ctgactccca gccagttcct cgaactggat aaaaatcacc tcaaaggtct
    24901 gttactgaaa agtggcggca ccacctcaca taccgtaatt cttgcccgtt cgttcaacat
    24961 tccgacactg gttggtgtag atattgatgc ccttactccg tggcagcatc aaacgattta
    25021 tatcgacggc aacgccgggg cgattgtggt tgagccaggg gaagccatgg cccgttatta
    25081 tcagcaagaa gcccgcgtac aggacgccct tcgtgagcaa cagcgtgtct ggctgaccca
    25141 acaagcccgt accgctgacg gtatccgcat tgaaattgcc gctaacatcg ctcactccgt
    25201 ggaagcgcag gccgcattcg gcaatggtgc ggaaggcgtt ggtttgttcc gcactgaaat
    25261 gctctatatg gatcgcacca gtgcaccggg cgaaagcgag ctgtacaaca ttttttgtca
    25321 ggcgctggag tctgccaacg gacgcagcat tattgtgcgc actatggaca ttggcggcga
    25381 caaacccgtt gattatctga acattccggc agaagctaac ccgttcctcg gttatcgcgc
    25441 tgtgcgtatt tatgaagaat acgcctcgct gttcaccaca caactacggt cgatcctgcg
    25501 cgcctccgct cacggcagcc tgaaaatcat gatcccgatg atctcctcaa tggaagagat
    25561 cttatgggtg aaagaaaaac tggcggaagc caaacagcaa ctgcgtaacg aacacattcc
    25621 gtttgatgag aagatccagc ttggcattat gctggaagta ccgtcggtga tgttcatcat
    25681 cgatcaatgc tgcgaagaga ttgatttctt tagtattggt agtaatgacc tgacgcaata
    25741 tctgctggca gtggatcgcg ataacgctaa ggttactcgt cactacaaca gcctgaatcc
    25801 ggcattcttg cgggcgctcg attacgccgt gcaggcggtg catcgccagg gcaaatggat
    25861 tggtctgtgc ggtgagctgg gagcgaaagg ttccgtgctg ccgttgctgg tcggcttagg
    25921 gctggatgaa ctcagcatga gcgcaccatc aattccggcg gcgaaagcgc ggatggcgca
    25981 acttgatagc cgtgagtgcc gcaagttgct caaccaggca atggcctgcc gtacttcgct
    26041 ggaagtggaa cacctgctgg cgcaattccg catgacccaa caggacgcac cgctggtcac
    26101 cgccgagtgc atcacgctgg aaagtgactg gcgcagcaaa gaagaagtgc tcaaaggcat
    26161 gaccgataac ctgctgctgg cgggccgctg ccgctatccg cgtaaactgg aagccgactt
    26221 atgggcgcgc gaggccgttt tctctaccgg tctgggcttt agttttgcca ttccacacag
    26281 caaatcagaa cacattgagc aatccaccat cagcgtggcg cgtctgcaag cgccggtgcg
    26341 ctggggcgat gatgaagcgc aattcatcat tatgttaacc ctgaacaaac acgctgcggg
    26401 cgatcagcac atgcgcattt tctcgcgcct cgctcgccgc atcatgcacg aagaattccg
    26461 taacgcgctg gttaacgccg cctctgccga cgctatcgcc agcctgctgc aacatgaact
    26521 ggaactgtaa aaggaaacat catggaactg tatctggaca ccgctaacgt cgcagaagtc
    26581 gaacgtctgg cacgcatatt ccccattgcc ggggtgacaa ctaacccgag cattatcgct
    26641 gccagcaagg agtccatctg ggaaattctg ccgcgtctgc aaaaagcgat tggtgatgag
    26701 ggcattctgt ttgctcagac tatgagtcgt gacgcgcagg gtatggtgga agaagcgaag
    26761 cgcctgcgcg acgccattcc gggcattgtg gtgaaaatcc cggtgacttc cgaaggtctg
    26821 gccgccatta agatgctgaa aaaagagggt attactacgc ttggcaccgc agtgtacagt
    26881 gctgcacaag ggttactggc cgcgctggca ggggcaaaat acgttgctcc gtatgttaac
    26941 cgcgtagatg cccagggcgg ggacggcatt cgtacggttc aggagctgca agcgctgtta
    27001 gaaatgcatg caccagaaag catggtgctg gcggccagct ttaaaacgcc gcgtcaggcg
    27061 ctggactgtt tactgacagg atgtgaatcc atcaccctgc ccttagatgt agcgcaacaa
    27121 atgctcaaca cccctgcggt agagtcagct atagagaagt tcgaacacga ctggaatgcc
    27181 gcatttggca ctactcatct ctaaaggagc aattatggac cgcattattc aatcaccggg
    27241 taaatacatc cagggcgctg atgtgattaa tcgtctgggc gaatacctga agccgctgga
    27301 agaacgctgg ttagtggtgg gtgacaaatt tgttttaggt tttgctcaat ccactgtcga
    27361 gaaaagcttt aaagatgctg gactggtagt agaaattgcg ccgtttggcg gtgaatgttc
    27421 gcaaaatgag atcgatcgtc tgcgtggcat cgcggagact gcgcagtgtg gcgcaattct
    27481 cggtatcggt ggcggaaaaa ccctcgatac tgccaaagca ctggcacatt tcatgggtgt
    27541 tccggtagcg atcgcaccga ctatcgcctc taccgatgca ccgtgcagcg cattgtctgt
    27601 tatctacacc gatgagggtg agtttgaccg ctatctactg ttgccaaata acccgaatat
    27661 ggtcattgtc gacaccaaaa tcgtcgctgg cgctcctgca cgtctgttag cggcgggtat
    27721 cggcgatgcg ctggcaacct ggtttgaagc acgcgcctgt tcccgtagcg gcgctaccac
    27781 tatggcgggc ggcaagtgca cccaggcggc gctggcactg gcagaactgt gctacaacac
    27841 tctgctggaa gaaggcgaaa aagcgatgct tgccgccgaa cagcatgtag taacccctgc
    27901 gctggaacgc gtgattgaag cgaacaccta tttaagcggt gttggttttg aaagcggcgg
    27961 actggcggcg gctcatgcgg tgcataacgg cctgaccgct atcccggacg cgcatcacta
    28021 ttatcacggt gaaaaagtgg cattcggtac gctgacgcag ctggtactgg aaaacgcgcc
    28081 ggttgaggaa atcgaaaccg tagctgcact tagccatgcg gtaggtttgc caataactct
    28141 cgctcaactg gatattaaag aagatgtccc ggcgaaaatg cgaattgtgg cagaagcggc
    28201 atgtgcagaa ggtgaaacca tccacaacat gcctggcggc gcgacgccag atcaggtata
    28261 cgccactctg ctggtagccg accagtacgg tcagcgtttc ctgcaagagt gggaataacc
    28321 tactccaaac tcccggcttg tccgggagtt tgaacgcaaa attgcctgat gcgctacgct
    28381 tatcaggcct acgcaatctc tgcaatatat tgaatttgcg tgctttttag gccagataag
    28441 gcgttcacgc cgcatccggc actctgtgcc agtaatctga aactcctacg ttgttcagga
    28501 gttttttatc cgcttctgga cattttctct acagaacaat cgttagcccg gaaggtcgaa
    28561 tctgtgactc ttattttcac ggacgaacca gatgaaagct tcactggcgc tgctcagcct
    28621 gctaacggca tttaccagcc actccttaaa atctcccgcc gttccaccaa ccgtggtaca
    28681 aatccaggcc aataccaacc ttgccatcgc agacggtgcc agacagcaaa tcggcaacac
    28741 gctattttac gatccggcgt atgtgcggct tacctatcct ggcggtgatg tcccgcaaga
    28801 acgcggtgta tgttccgatg tggtgatccg tgcattgcgc agccagaagg tcgatttgca
    28861 gaaactggtt cacgaagata tggcgaagaa ttttgccgag tacccgcaaa aatggaagtt
    28921 aaagcgcccg gacagcaaca tcgatcaccg tcgggtgcct aatctggaaa cctggtttag
    28981 ccgccacaac aaaacacgcc ccatcagtaa aaatgccggt gactatcaag cgggcgatat
    29041 tgtctcctgg cgattagata acgggctggc gcatattggg gtggtgtcag atggcttcgc
    29101 ccgcgacggt acgccactgg tgatacataa cattggcgca ggcgcgcagg aagaagatgt
    29161 gctgtttagc tggcggatgg tggggcatta tcgttatttt gttaaataag cgatcgcccc
    29221 acatgaagaa aaaattcaga tgctttttac actgacagct tcttttttct tacggctcac
    29281 cagcgccagt gccagcacaa tcagcacaat accgctacct tcaacggccc ccggattctc
    29341 accgagcagc caccaggaaa agagtacgcc gcaaacggga acggccagcg tgcttaagct
    29401 ggcaatactg gcaggcaagt ttttcaatac aaacaaccat aagctccacg ccagcgccgt
    29461 cgccagaatc gcactgtagg ccagcgccca gaacacggtg ggctgccagt caatttcacg
    29521 ttgcggcacc agtaaagcga ccacactcat caccagcgcc gcatagagca tctgccagga
    29581 tgttaacgat aataaatcca cgcgcggatg acgggtgtat aggcgtttag caacaatcgc
    29641 gctcgccccc caactaacac cggagaggat tgccagcatg gcacttttca tcgaagagaa
    29701 atcgagttgc cacggctgca acaccaaaaa taagccgaaa gcggcaatca gaatcgcgaa
    29761 atattgccca cgtcgcaggc gttcaccgag aaacaacgcg gcgaaaatca ccacccagaa
    29821 cggcatggta tagctcagga tcgccacctt ccccgcacct ccgctgacca acgcccactg
    29881 cgccagacca accatcccgc aggtttgtaa cagggcaatg gctaaggtgt atttaaacgg
    29941 cgtcgggtgc attccgcgac cacgtaataa aaggacgatg aataaaacga gagcgccgaa
    30001 aatgcagcgt aaggcggtaa agtcgaaggc accgatgtaa ctggtgactt gcttcatgaa
    30061 aatccagcta taactccaga taagtgtgag cacaaccagg ccactgattg ccagtgggtt
    30121 gctctttcct gcggcagaca tgagagatcc agtgtgtagt tttcctgtgg acactatacg
    30181 ccggtaaaga aacttcagcg actgcctgaa agacagtcac tgaagaaggt cagattacag
    30241 caggtcgaaa cggtcgaggt tcatcacttt cacccatgcc gctacgaagt ctttaacaaa
    30301 cttctcgtgg gcatcgctgc tggcgtaaac ttccgctacc gcacgcagga cagagttaga
    30361 accaaatacc agatccgcac ggctggctgt gtatttcact tcgccggttt cgcggtcacg
    30421 tccttcgaac agctctttcg attcgtcagt cgctttccac tcgtaacgca tatccagcaa
    30481 gttcacgaag aagtcattgc tcaatacgcc aacgcggtca gtgaagacgc cgtttttgct
    30541 gctatcgaag ttggcaccca gtacacgcat cccgcccacc agcgcagtca tttccggcgc
    30601 ggtcagcgtc agttgctgtg ctttgtcgat cagcagtgac tcggtggtgg aaacgtccag
    30661 acgagcgcga tagttacgga aaccgtcagc aattggctcc agcagctcaa acatctcaat
    30721 gtcagtctga tcctgacgcg catcaacgcg acccggcgca aacggtacat gaatgctcaa
    30781 acctgcggcg cttgcggctt tctcaacacc aaccacacca gccagcacga tgatatccgc
    30841 cagcgaggct ttaccagact ctttctggat tttctccaga acaggcagag cacgaacggc
    30901 tgcggcgttc acatcccagt cgcgctgcgg cattaatgcc agacgcgcac cgttggcacc
    30961 accgcgtttg tcgccaccac ggaaggtaga agcagatgcc caggccaccg ataccagctc
    31021 actaacagac agaccagaat ccgcaatcgc gaatttcaga tcgataatgt cctgctcggt
    31081 cgggttgtag atcggctgcg gcagcggatc ttgccagatc agatcttctt tcggcacttc
    31141 cggcccgatg tagcgagatt tcggccccat atccctgtgc gtcagtttga accaggcacg
    31201 ggcaaaggct tcgttgaacg cctgcggatc gttgaggaaa cgacgagaga tcttctcgaa
    31261 ctcaggatca aaacgcagcg tcaggtcggt caccagcatt gtcggtttac gtttcttcga
    31321 cggatagaac ggatccggga taatttccgg tgcgtctacc gcgtcgaact ggattgctcc
    31381 agccggactg cgggtctgta cccactcata tttgaacagg ttctcgaaga aatagttgct
    31441 ccactgggtc ggcgtctggg tccagacaac ttccagacca gaggtaatgg catctgcgcc
    31501 aacgccgctg ccgtaagtgc tcgcccagcc taaaccttgt tcttcaatcg gtgcagcttc
    31561 tggatcagga cctacatttg atgtcggacc ggcaccgtga gttttaccca gcgtatgacc
    31621 acccgcaatc agcgccacgg tttcttcgtc gttcatgccc atgttgccga aggtcgcacg
    31681 gatagctgct gccgcagaaa gcggttcgcc gctgtgatcc gggccttccg ggttaacgta
    31741 aatcagaccc atctcggttg cacccagcgg tgctttcgcc agcgcttccg gatgacggtg
    31801 agtcagccag gctttttcat caccccagtt aacatccaga tccggttccc agacgtcttc
    31861 acgaccggca ccaaaaccga aggtacggaa gccggagttt tccagcgcca cgttacctgc
    31921 gaggataaac aggtcggccc aggagatttt ctgaccatat ttctgtttga ttggccacaa
    31981 caggcgacgc gctttatcga ggcttacgtt atccggccag gagttcagcg gtgcaaaacg
    32041 ttgctgacca cgacccgcgc cgccgcgtcc atcgattgaa cggtaagtac ctgcgccgtg
    32101 ccaggccata cgaataaaca gaccggcgta gctgccccag tcggctggcc accacggctg
    32161 agattctgtc agcagggctt tcagatcttt tttcaggccg tagtaatcta atttgctgaa
    32221 ttctttgcgg tagtcaaagt cctcacccag cgggttagaa cgattagaat gttggtttaa
    32281 caggtcaaca cggagttgat ttggccacca gtcgcgagtg gttgtgcccg cccccgcgct
    32341 ctggtcgtga ccgccctgat ggaacgggca tttgccagtg gctgtcgtgt tatggatatc
    32401 gtctgacgtg ctcatcaatg tgctcccctc tacagtgtta ccgttacgat acacagcgtt
    32461 agagagaagt tataattgaa ttaatccacg gatgcgatag ttgagatctt acatattgtt
    32521 ggttaaagag atgtaggtca aattgatcgt aattaagctt ttttgattat gtccgaattc
    32581 ggacaaatgc tttataaaaa agggttttag cttcatatcc ttcaagtaat gagggagaaa
    32641 acaaggctga caaccttatt ttcccgccct catttcgagg cagcattttg tgctctgttt
    32701 aaaatttgtg atcactgtgt gattttcaca aaagccacac tatttataaa ccaggtcgaa
    32761 cacccagcgt atggcaaatc gcgtaactca tttcagcgcg gttaagcgta tagaagtgga
    32821 aatctttcac tccttcacgg cttaaaatct tcaccatatc catggcaata ttcgcgccca
    32881 ccagtttgcg ggtttcggca tcatcatcta ggccgtcgaa catttgcgcc atccacgccg
    32941 gaatacgcac gttggtcata tcggcaaatt tcttcgcctg tttaaagtta gataccggca
    33001 aaattcccgg aataatttcc acatcaatgc ccgccgatac acagcggtca cgaaaacgca
    33061 ggtagctttc gacatcgaag aagaactgag taatcgcgcg gttggctccg gcatcgactt
    33121 tacgtttcag attaagcaaa tccgcctgag cgctttttgc ttccgggtga acttccggat
    33181 acgccgccac ggagatatcg aaatctgcca cttcttttaa tagcgtcacc aggtcagaag
    33241 catacatttc tggcttacca cttcccggcg gcagatcgcc acgcagcgcc acgatatgac
    33301 gaataccgtt attccagtag tcgcgtgcaa tggtgcgcaa ctcgtcgggc gtcgcatcaa
    33361 tgcaagtaag atgcggtgcc gcttccagac cagtgcgatc tttaatgcct ttaataatgc
    33421 tgtgcgtacg gtcgcgctcg ccggagttcg cgccataggt caccgataca aacttcggtt
    33481 tcaggctgct aaggcgatcg atggagttcc acagggtctg ctccatttca ctggtacgcg
    33541 gcgggaaaaa ctcgaacgaa acgttaatct gcccctggac ttctgccagg ctctgattca
    33601 gggcatcccg ctggctggcg tgaaaaaagc tcatacctta cctcatcaat cgcttgtagt
    33661 tatatgttgt gctgtgcaca tctatccgtt tagacgtcca gatgtaaaga tgaaggaaaa
    33721 gccgaagggc gtcaaccgaa aaatgaccaa tgatggtgag gaaaaatcag ggaagatgaa
    33781 aaaacttcag gatggtaaga aaaagaaaat ccggtatgca aagcaaaccg gactgcaaat
    33841 ataaactaac catgtactta ttgcttcttg ccggattcgt cgtaaacgct taatccggcc
    33901 taatcctatg ataattcaat atatttcatt agaaaccata aacccgaaaa catgagtacc
    33961 gggcattatt aaatttctga aattacaaca actgtgccag ccggttgata tccgactgaa
    34021 tcgccccggc ggtgacgtcg cgccccgcgc caggcccacg gatcaccagc gggttgtcgc
    34081 gataccagcg gctttcgatg gcaaagacgt tatcgcacgg cagcagtgat gccagcggat
    34141 ggtcttcacg caccgcctcc acgcccacac gcgctttgcc gttggcatcg aaacgcacca
    34201 cgtagcgcag caccagcccc atttcgcggg ccgcttccag ccgttgcacc atctgctcgt
    34261 taagttcatc gccattttca aagaaatggt cgatgctgcc gccttcgcaa tgagcaggca
    34321 ccagcgattc cacacgtacc tggtccggtt caatgttgta acccgcttca cgcgccagaa
    34381 ttaccagctt gcgcattacg tctttgccgg agaggtcgtc acgcggatca ggctcggtta
    34441 agccctgctg ccacgcctga tccaccagct cggtaaacgg cacgctaccg tcgaattgca
    34501 ggaacagcca ggagagcgtg ccggagaaga tcccgctgat cgacaaaata gtatcgccgc
    34561 tgtcgatcag atcgcgcacg gtgtggttga tcggcaagcc cgcaccgacg gtggcattgt
    34621 acagccagtg acgcccggtt ttttcgaagg cgtcgtggat ctggcgatat ttattgctgt
    34681 cgctggctcc cgccagtttg ttggcgctga taacgtggaa accgtggctg gcgaaatcaa
    34741 gatactgatc agcaagctgc tggctggcgg taacgtccag caccactaaa tcatcatacg
    34801 gatgggcgcg catccacagg aacaacgact cttcatcctg ctcaaccgct tcatcgttga
    34861 agaaggctaa cgcgcggctg gcgtccagcc cgtcatagct caacaggctg cggcggctgt
    34921 ccaccacacc tgccagcaca aactcaaagc cggtacgtgc cgaaagcgtg ctctgctcac
    34981 gggcgaacag ttccagccaa cgggaaccga tattgccctt accgaacaat accaggccga
    35041 tgcgtttttc tgcgcggaag acggactgat gcagcccctg aatcaggctt tcggtcgggc
    35101 cggtgcgcag tactgccacc aggctgatgc cgtcatcgga ctgccaggta aattcgaccg
    35161 gctggccttt cagttgctgc cagaagcggt ggcaatgcag cgggttacgg gtgacgcctg
    35221 caccgaccat cgccaccagc gccagcccct gacgcaggcg cagttcgcca ggtaatcccg
    35281 cttcgtcgag gattttcagc gcactgtcgg ccacttctga ggtgtagcaa aattgcagca
    35341 actggcgatc gttatgtacg ccaaccgcca gcgggcgtac ctgcgcgcgt ttcaggattt
    35401 ggtcgatctc tttatgcacc agtttgaaat cctgactggc gggcacctga aactcaatca
    35461 aacagacatc atcgtggctg gtgacaatac gcgcaccagt accggaggcc agcacgcgtt
    35521 caatgcgcgt ggaaccttga tccggcgtgt agctacagcg cagttgcagg tcgatttcgc
    35581 tgccagaaac cggctgtaaa gtacgggcgt gaagaacggg agccgccagg cgcgccagtt
    35641 cgctggcctc atccagacgc agcaacggca gcaggcaggc atctttcact ttacgcgggt
    35701 cggcactgta taccccggcg acgtcgctcc agatggttac gcgagaaaca cccgccagcg
    35761 caccgatttg tgtcgcggaa tagtcggaac cgttacgccc cagcagcacc gtttcaccgg
    35821 cgttgttgcg gctgataaat ccggtcacca ccagacgttt gcccggatgt tgcaccagca
    35881 gctgttgcag caacgggtaa gaaagccctt catcaacctg cggttgtgcg gcgcgttcag
    35941 cgcgtaaaaa ctcgcgggca tcaagccagg ccgctggcag cccttgttga ttaagtaccg
    36001 cagacatcag gcgtgccgac catacttccc cgtggcccac cacttccgca tacactgcgt
    36061 cgttaatacc gctgtcgagc agcgccgcta ggcgctcaag gtcgctgaca aaagcgctaa
    36121 tgaggctatc agcttcttca gcgggtagca gaccgctaat cagatcgcac tgatagcgac
    36181 gcagcgtttg ttgaacctga tgcgcagaga gacgatcggt ctggcttagt ttcaaccagt
    36241 taatcaactg gttagtggtg ctaccggcgg cggaaaccac catcatatcg tcaggctgag
    36301 agtactccgc cataatgccc gcaacacgca aataacactt cacatcagcc agactactgc
    36361 caccaaattt atgcagttga cgacctttcg cccctgcctg cgcaatcaca ctcattttta
    36421 ccccttgttt gcagcccgga agccattttc caggtcggca attaaatctt cgccatcttc
    36481 aataccggtg gagatacgca gcagcgtctc ggagatcccg gcggcagcac gcgcttctgg
    36541 tgccatgcct gcatgtgtca tggttgcggc gtgagagatt aaactttcca ctccccctaa
    36601 tgattccgcc agcgtaaaca acgacagccc gcccaggaaa cgacgcagcg tctgctcatc
    36661 tccatccagt tcaaaactca acattgcgcc aaagcctttt tgctggcgcg cggcaatttc
    36721 atgcccctga ttttccggca gcgacgggtg atacagtttt ttcaccaacg gctgggtttg
    36781 cagatatttc acaatcgcct gcgcgttgcg ctgggccagc tccatacgcg gcaccagcgt
    36841 tcgcaacccg cgtagcagca gatagctgtc aaacgcgccg cccgtcacgc caatattgtt
    36901 tgtccaccag gcaagttcag tgacaacgtc cgggtcttta gcaatcacca cgccagccac
    36961 cacgtcagag tgaccgttca gatatttcgt acatgaatgc aacaccagat cggcacccaa
    37021 tgccagcgga ttttgtaatg ccgggcttaa gaaggtgtta tccaccacgc tcaccgcccc
    37081 gacttccctt gccagatggc agattttcgc aatatccacg acgcgtaaca atggattact
    37141 tgggctttct accagtacca gtttgggttt ttctgccagc gctgcccgta atgcctgttc
    37201 atcgccttga tcaacaaaca acacgcgata gcaaccgcgt ttcaccagac tgtcgaacag
    37261 gcgatagcta ccgccgtagc agtcgtgcgg cgcaaccagc agatcgccag gtttcaaaaa
    37321 gacggtcgtg accaagtgaa tcgcggacat gccggtatta gtaagtactg cgccagcacc
    37381 gccttccagt tctgccagcg cacgctgaac cacatcgcgc gttgggttgc cgcgacgcga
    37441 gtaatcatgc gcgcgcggtt cattaaatcc ggtaaagtta taggtgctgg aaagatggat
    37501 gggagggaca acgcaaccat actgttcgtc gtcatttaac ccgctacgca ctgcgatggt
    37561 ggcctgttta cgcgtcatgt gatgaagttt cctgggcttt gtcggtgaaa tgtcaggcac
    37621 cagagtaaac attgtgttaa tggacgtcaa tacatctgga catctaaact tctttgcgta
    37681 tagattgagc aaatcccaaa tagccgttaa aattatatgc attatcacgc cgacaggtgc
    37741 attacacgat gtcacggtaa cgcctgtacg gtaaactatg cgggtttacg gtcagtaccc
    37801 acataaattg tgtggtctgg tctcaattta ttgacgaaga ggattaagta tctcatggct
    37861 gaatggagcg gcgaatatat cagcccatac gctgagcacg gcaagaagag tgaacaagtc
    37921 aaaaagatta cggtttccat tcctcttaag gtgttaaaaa tcctcaccga tgaacgcacg
    37981 cgtcgtcagg tgaacaacct gcgtcacgct accaacagcg agctgctgtg cgaagcgttt
    38041 ctgcatgcct ttaccgggca acctttgccg gatgatgccg atctgcgtaa agagcgcagc
    38101 gacgaaatcc cggaagcggc aaaagagatc atgcgtgaga tggggattaa cccggagacg
    38161 tgggaatact aaagcaaaaa agagcggcgc ggagtggaat cgcctgatgc gctacgctta
    38221 tcaggcctac gtcatattgc aatttattga atttgcacga acttgtaggc cggataaggc
    38281 gttcacgccg catccggcat aaacaacgag cacgttgtct gcgacccacc gctttttata
    38341 catggacgtt taactatgaa aaacaggctg ctgatcctca gcctgctggt ttctgtacct
    38401 gcctttgcct ggcagccaca aaccggcgac atcatctttc agatctctcg ctcatcgcaa
    38461 agtaaagcga tccaactggc gacccattcc gattatagcc acaccggtat gctggtgata
    38521 cgcaacaaaa agccctacgt ttttgaagcg gtcggcccgg tgaaatacac cccgctcaag
    38581 cagtggatcg cccatggtga aaagggcaaa tacgttgttc gccgcgttga aggcggactg
    38641 agtgttgaac aacagcaaaa actggcgcaa acggtaaaac gttatctcgg taaaccgtat
    38701 gatttcagct tctcatggag cgacgatcgc cagtactgtt cggaagtggt gtggaaggtt
    38761 taccagaacg cgctgggaat gcgcgtgggc gagcagcaga agttgaaaga gttcgatctc
    38821 agcaacccgc tggtccaggc taagctcaaa gaacgctacg gcaaaaatat tccgcttgag
    38881 gaaacggtag tttcaccaca agccgttttc gacgcgccac aactcaccac ggttgccaaa
    38941 gagtggccgc tgttttcgtg gtaatggatg atgaaaaaaa taattcccgc cgtagtctgt
    39001 ttgttgcttt gtagttgcac gacctttccg caaactgtcg ctccggtaaa cggtgatgcc
    39061 tccaattagt tgaattaagg atataatact cgcttttaag gttgtttcat ggtcacagtt
    39121 aaccttcatt gcccccgttg ccagtccgtt caggtttacc gtcacgggca gaacccaaaa
    39181 agacatgatc gattccgcgg ccgtgactgt caccgggtat ttcagctcag ttactgttac
    39241 gagccccgta aaccgggagt taaagaccaa atcgctgaaa tgactttcaa cggtgccggg
    39301 gttcgcgata ctgcccgtac gctgaaaatc ggcattaata cagtcatccg aactttaaaa
    39361 aactctcgcc acgaagaata acgtcatccc cggtcgctca tgctgatgtg gcactcatct
    39421 gcgaacttag tcagcaatgg agctttgtcg gcagtaaagc gcgacagcac tggctctggt
    39481 acgtgtacaa cacgaaaact ggtggtgttc tggcctacac ttttggcccc cggactgacg
    39541 aaacctgtcg tgaattgctg gcgctgctta cccttttacc atcggcatgt tgaccactga
    39601 cgaatggggt agttacacca gagagttacc gaaggaaaag catctgactg gtaagatttt
    39661 tactcagcgc attgagcgca acaatctgac cctgagaacc cgaatcaaac gtctggcccg
    39721 cagaaccatc tgtttctcgc gctctgtaga acttcatgaa aaagtcatcg gtgcttttat
    39781 caaaaatata tgttctacta attggagtca tcacccttct gatgagcttt ccttggatga
    39841 ttaccagact gaatacacag ccaaagattt ttacctcatt ctgctctttt ttctcaaatg
    39901 acatatatta tattttacat catattcata ggcatatgac attcccccgc ccccattatg
    39961 tcattgtggg ttgatgttgg gctttcataa aaaaaacatc tttttttgaa ctagcattaa
    40021 ttatatttac tttatatatt aaaatatttt ctccatctgg aaatatttta gccacacaat
    40081 ataaaacagc tgaatccgaa ttacttaaaa atatattatc attacccata actccagcca
    40141 ttaaattact ggagactaaa gcaaggaaat aacaacattg tattgccttc attttaatta
    40201 ctcccttgtc tgataattgt aactccattc cctttagctt taggattata ttttagatag
    40261 gtattatttg gtgttcccaa gtaactactg tattcttttt ttcccattcc attcatataa
    40321 gaattcgtta aatctttgct tgaaaaattt agactatcat aaacatcatt ttcttttgtt
    40381 actttatttc ctttatcgtc agagtaaaaa ccgtgagtgt gataatcgcc tactctctct
    40441 gaaccttcag ggcattttat atttcgcaag tctacactat cattatcatt tgaacttatc
    40501 ggattcatgg ggaaatattc accttgcttc ttacatatta gtccaccata ttatttattc
    40561 tcgttaattg attctccatt acacattgcc aatgcaaata ttccaatatc atctatattt
    40621 tttgatttaa attcatataa tcctaatgga tccatgctat tcaccgggct cagcggatac
    40681 tgataaaaat tccatccccc cttcagccca atcggatcct gagtgatata tcgcccctgc
    40741 agcgggtcat aatagcggtg gcggttgtaa tacaggccgg actcctcatc atactgctgc
    40801 cccggcaggc gaatgagctg ctgcagatga tgcgggttct cttcattcag caggttgccc
    40861 cactcatcgt attctgcgca ccattctgtt gccccttccg tgctgataag caccagcggc
    40921 aggccgcaat ggtcgcagtg gtacaggtga atttttcgcg ccggcgtgta caccgggtcc
    40981 atctggtttt tcatctgcgc cacggtcagg ccgcacgatg ccagccagcg gcggctttcc
    41041 tcactcaccc ggtcagccag gatttcactt tccagccggt cgagcatctg caccagcacc
    41101 ggcgggaaca ccacactgcc accgtcttcg ccgccggact gctgaagggt atccgccagg
    41161 ctgcggcgct gcgttttcgc cagctcaccg gtggcggttt caactctgat gagtggcgtg
    41221 aagctccccg gctgataaat cgtctggatg cggctcctgt cgttctgtat tgtggtcagc
    41281 cggtcgccgt cccagccgta ccaggtcact tccggtttcc gtgacagcga catccagccc
    41341 gtcaggtcac gttcacgccg ccacacccgt tttgccaccc tgcggcccag cgggtcgtaa
    41401 agatag
//
LOCUS       DAJVUN010000007        39877 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.007, whole genome shotgun sequence.
ACCESSION   DAJVUN010000007 DAJVUN010000000
VERSION     DAJVUN010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39877
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.007"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(57..584)
                     /locus_tag="OQQ76_000296"
     CDS             complement(57..584)
                     /locus_tag="OQQ76_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001762409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1966907.1"
                     /translation="MQHLKNITAGNPKTVAQYQLTKNFDVIWLWSEDGKNWYEEVSNF
                     QEDTIKIVYDENNIIVGITRDASTLNPEGFSVVEVPDITANRRADDSGKWMFKDGAVI
                     KRIYTADEQQQLAESQKATLLSEAESVILPLERAVRLNMATDEERSRLEAWERYSVLV
                     SRVDPANPEWPEMPQ"
     gene            complement(588..2678)
                     /locus_tag="OQQ76_000297"
     CDS             complement(588..2678)
                     /locus_tag="OQQ76_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001623412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1966908.1"
                     /translation="MSTKFKTVITTAGAAKLAAATAPGGRKVNITTMAVGDGGGKLPV
                     PDAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLI
                     AVANMAESYKPALAEGSGRSQTCRMVIIVSSVASVELTIDTTTVMATQDYVDDKIAEH
                     EQSRRHPDASLTAKGFTQLSSATNSTSETLAATPKAVKAAYDLANGKYTAQDATTARK
                     GLVQLSSATNSTSETLAATPKAVKAAYDLANGKYTAQDATTARKGLVQLSSATNSDSE
                     TLAATPKAVKTAYDLANGKYTAQDATTARKGLVQLSSATNSDSETQAATPKAVKSAYD
                     NAEKRLQKDQNGADIPGKDTFTKNIGACRAYSGALSTEAGNWTTAQFIEWLDSRGAFN
                     HPYWMCKGSWSYANNKIITDTGCGNIHLAGAVIEVMGIKSAMTIRITTPTTSSGGGAT
                     SAQFTYINHGDNYAPGWRRDWNRYGDSMSGTINQDSGSQNAYMSTALCSGTRGGKKYL
                     RKFRGGEGDTIWHETVQGGVIRWATGNTDAQEELSLSSAYGLRSRGEITSLSANGLRI
                     AYGNYGFFIRNDGGSTYLMLTASGDKFGTWNGLRPLTINNANGGVSMGHGLSVTGRVN
                     PSDYGNFDSRYVKDVRLGTRVVQTMQKGVMYEKSGHVITGLGIVGEVDGDDPAVFRPI
                     QKYINGTWYNVAQV"
     gene            complement(2689..3219)
                     /locus_tag="OQQ76_000298"
     CDS             complement(2689..3219)
                     /locus_tag="OQQ76_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001285325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HCS1966909.1"
                     /translation="MSDSRLLPTGSSPLEVAAAKACAEIEKTPVSIRDLWNPDTCPAN
                     LLPWLAWAFSVDRWDEKWPEATKRAVIRDAYFIHCHKGTIGAIRRVVEPLGYLINVTE
                     WWETSDPPGTFRLDIGVLESGITEAMYQEMERLIADAKPASRHLIGLNITRDIPGYLF
                     AGGVAYDGDVITVYPG"
     gene            complement(3212..4120)
                     /locus_tag="OQQ76_000299"
     CDS             complement(3212..4120)
                     /locus_tag="OQQ76_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001121472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HCS1966910.1"
                     /translation="MPIIDLNQLPAPDVVEELDFETILAERKATLISLYPEDQQEAVA
                     RTLTLESEPLVKLLEENAYRELIWRQRVNEAARAVMLACAAGNDLDVIGANYNTARLI
                     ITPADDSTLPPTPAEMESDTDYRLRIQQAFEGLSVAGSVGAYQYHGRSADGRVADISV
                     TSPSPACVTISVLSRENNGVASEDLLAVVRNALNGEDVRPVADRVTVQSAAIVEYQIN
                     ATLYLYPGPESEPIRAAAVKKLEAYITAQHRLGRDIRLSAIYAALHVEGVQRVELAAP
                     LADIVLNSTQASFCTEYRVVTGGSDE"
     gene            complement(4125..4472)
                     /locus_tag="OQQ76_000300"
     CDS             complement(4125..4472)
                     /locus_tag="OQQ76_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HCS1966911.1"
                     /translation="MTARYLGMNRSDGLTVTDLEHISQSIGDILRTPVGSRVMRRDYG
                     SLLASMIDQPQTPALELQIKVACYMAVLKWEPRVTLSSVTTARSFDGRMTVTLTGQHN
                     DTGQPLSLTIPVS"
     gene            complement(4469..5098)
                     /locus_tag="OQQ76_000301"
     CDS             complement(4469..5098)
                     /locus_tag="OQQ76_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004999972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HCS1966912.1"
                     /translation="MNAQYNEILRFIRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQ
                     WLTHRAGRSRTWWAPSVGEQVLILAVGGELDTAFVLPGIYSGDNPAPSASADALHIRF
                     PDGAVIEYEPETSALTVSGIKTASVTASDSVTATVPVVMVKASTRVTLDTPEVVCTNK
                     LITGTLEVQKGGTMRGNIEHTGGELSSNGKVLHTHKHPGDSGGTTGSPL"
     gene            5185..6258
                     /locus_tag="OQQ76_000302"
     CDS             5185..6258
                     /locus_tag="OQQ76_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001764703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966913.1"
                     /translation="MSTYFFSSETMKELFKDYLVFLNTLTPGTNFESSRNKIIAQAIN
                     FISENPEDWDKKSQYNIAMIGDTFKSFLREKGEDNNSINLIFTCFFRFIIEPSILSPE
                     IESHFSPLRTIKDFALYNYNEFDERSRAQIDFSLRELPLAMVKEVLSSSNVDTYKKYI
                     DSLNEGRQFFEKCDSFLKEQHAKIESIKESLKGYEVAFNFVGLFEGFNSLGKKKESEI
                     MLSRIILIILAIIIPSPLIYYGMHKLPALETTNAATYFMSALPFASVTLIFMYYFRVV
                     LLNHISLRTQIMQIELRKSLCQFIQSYSDYSSEIRKNNPEALSKFEDVVFSNIMLSDD
                     KIPSTFDGIEQIASLINSLKNGK"
     gene            complement(6361..6813)
                     /locus_tag="OQQ76_000303"
     CDS             complement(6361..6813)
                     /locus_tag="OQQ76_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HCS1966914.1"
                     /translation="MNEFKRFEDRLTGLIESLSPSGRRRLSAELAKRLRQSQQRRVMA
                     QKAPDGTPYAPRQQQSARKKTGRVKRKMFAKLITSRFLHIRASPEQASMEFYGGKSPK
                     IASVHQFGLSEETRKDGKKIEYPARPLLGFTGEDVQMIEEIILAHLNR"
     gene            complement(6806..7273)
                     /locus_tag="OQQ76_000304"
     CDS             complement(6806..7273)
                     /locus_tag="OQQ76_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001406878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1966915.1"
                     /translation="MLKPDSLRRALTDAVTVLKTNPDMLRIFVDNGSIASTLATSLSF
                     EKRYTLNVIVTDFTGDFDLLIVPVLAWLRENQPDIMTTDEGQKKGFTFYADINNDSSF
                     DISISLMLTERTLVSEVDGALHVKNIPEPPPPEPVTRPMELYINGELVSKWDE"
     gene            complement(7236..7394)
                     /locus_tag="OQQ76_000305"
     CDS             complement(7236..7394)
                     /locus_tag="OQQ76_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage lysis protein"
                     /protein_id="HCS1966916.1"
                     /translation="MPGSDPQKNGDLSADIRQLENALARCASQVKMIKHCQDENDAQT
                     RQPAQGAD"
     gene            complement(7381..7806)
                     /locus_tag="OQQ76_000306"
     CDS             complement(7381..7806)
                     /locus_tag="OQQ76_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001585210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HCS1966917.1"
                     /translation="MSKLMIVLVVLLSLAVPGLFLVKHENASLRTSLDRANSVASGQQ
                     TTITMLKNQLHVALTRADKNELAQVALRQELENAAKREALREKTITRLLNENEDFRRW
                     YGADLPDAVRRLHQRPACTDASDCRQRLPESEPLPDAGQ"
     gene            complement(7794..8219)
                     /locus_tag="OQQ76_000307"
     CDS             complement(7794..8219)
                     /locus_tag="OQQ76_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000736575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysA"
                     /protein_id="HCS1966918.1"
                     /translation="MKKLSLSQMLNVSLALMLALSLIYPQSVAVNFVAAWAILATVIC
                     VVTGGVGVYATEYVLERYGRELPPESLAVKIVTSLFLQPVPWRRRAAALVVMVATFIA
                     LVAAGWIFTALIYLVASVFFRLIRTACRQRFEGREPCQS"
     gene            complement(8234..8731)
                     /locus_tag="OQQ76_000308"
     CDS             complement(8234..8731)
                     /locus_tag="OQQ76_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 104 protein"
                     /protein_id="HCS1966919.1"
                     /translation="MPVINTHQNIAAFLDMLAVSEGTANHPLTKNRGYDVIVTGLDGK
                     PEIFTDYSDHPFAHGRPAKVFNRRGEKSTASGRYQQLYLFWPHYRKQLALPDFSPLSQ
                     DRLAIQLIRERGALDDIRAGRIERAISRCRNIWASLPGAGYGQREHSLEKLVTVWRTA
                     GGVPA"
     gene            complement(8731..9012)
                     /locus_tag="OQQ76_000309"
     CDS             complement(8731..9012)
                     /locus_tag="OQQ76_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000123123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1966920.1"
                     /translation="MTAEEKSVLSLFMIGVLIVVGKVLAGGEPITPRLFIGRMLLGGF
                     VSMVAGVVLVQFPDLSLPAVCGIGSMLGIAGYQVIEIAIQRRFKGRGKP"
     gene            complement(9016..9219)
                     /locus_tag="OQQ76_000310"
     CDS             complement(9016..9219)
                     /locus_tag="OQQ76_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000846400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HCS1966921.1"
                     /translation="MKTFALQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGAVLP
                     HGTAVELPDVQTAPVAETVNLWE"
     gene            complement(9219..9728)
                     /locus_tag="OQQ76_000311"
     CDS             complement(9219..9728)
                     /locus_tag="OQQ76_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HCS1966922.1"
                     /translation="MMTLIIPRKEAPVSGEGTVVIPQPAGDEPVIKNTFFFPDIDPKR
                     VRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTRLADVPADDIDGES
                     IRVFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWRDMRWAVARIQD
                     KPRCIVSQI"
     gene            complement(9828..10577)
                     /locus_tag="OQQ76_000312"
     CDS             complement(9828..10577)
                     /locus_tag="OQQ76_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HCS1966923.1"
                     /translation="MTSPAQRHMMRVSAAMTAQREAAPLRHATVYEQMLVKLAADQRT
                     LKAIYSKELKAAKKRELLPFWLPWVNGVLEQGKGAQDDILMTVMLWRLDTGDIAGALE
                     IARYALKYGLTMPGKHRRTPPYMFTEEVALAAMRAHAAGESVDTRLLTETLELTAAAD
                     MPDEVRAKLHKITGLFLRDGGDAAGALAHLQRATQLDCQAGVKKEIERLERELKPKPE
                     PQPQPKAATRTPRKTRSVTPAKRGRPKKKAS"
     gene            complement(10581..11654)
                     /locus_tag="OQQ76_000313"
     CDS             complement(10581..11654)
                     /locus_tag="OQQ76_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001248534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HCS1966924.1"
                     /translation="MRQETRFKFNAYLSRVAELNGIDAGDVSKKFTVEPSVTQTLMNT
                     MQESSDFLTRINIVPVSEMKGEKIGIGVTGSIASTTDTAGGTERQPKDFSKLASNKYE
                     CDQINFDFYIRYKTLDLWARYQDFQLRVRNAIIKRQSLDLIMAGFNGVRRAETSDRSS
                     NQMLQDVAVGWLQKYRNEAPARVMSKVTDEEGHTTSEVIRVGKGGDYASLDALVMDAT
                     NNLIEPWYQEDPDLVVIVGRQLLADKYFPIVNKEQDNSEMLAADVIISQKRIGNLPAV
                     RVPYFPADAMLITKLENLSIYYMDDSHRRVIVENPKLDRVENYESMNIDYVVEDYAAG
                     CLVEKIKVGDFSTPAKATAEPGA"
     gene            complement(11713..12567)
                     /locus_tag="OQQ76_000314"
     CDS             complement(11713..12567)
                     /locus_tag="OQQ76_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001074418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HCS1966925.1"
                     /translation="MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRI
                     NLEHLRGILPDGIFKRYGDVVELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQ
                     KVYTSMEIQPNFANTGKCYLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENL
                     ISVATPVELEFEDLPETVFTALTEKVKSIFGRKQASDDARLNDVHEAVTAVAEHVQEK
                     LSATEQRLAEVETAFSALKQEVTDRADETSQAFSRLKNSLDNTESLTQQRRSKATGGG
                     GDALMTNC"
     gene            12741..14513
                     /locus_tag="OQQ76_000315"
     CDS             12741..14513
                     /locus_tag="OQQ76_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001357052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HCS1966926.1"
                     /translation="MTITTDTTLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSW
                     KQRDGWDSVAPISRVEMSLEARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQ
                     TGNEADLNPNVANRNKGGRRKPKKNFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEHR
                     IRDILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFARLVDVD
                     LTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSH
                     LRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQ
                     IVTIEDALKGGCTLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTL
                     EEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGM
                     DFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYPAARDIRYTPEMKTAMVL
                     KAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSERIATYEASRSEEASHADLAWATM
                     HALLNEPLTAGISTPLTSTILEFY"
     gene            14513..15547
                     /locus_tag="OQQ76_000316"
     CDS             14513..15547
                     /locus_tag="OQQ76_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1966927.1"
                     /translation="MSKKKGKTPQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYV
                     ECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV
                     LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTPFTPGSV
                     FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR
                     NDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD
                     LLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQEVIRF
                     KNYSLDTDNS"
     gene            complement(15952..16881)
                     /locus_tag="OQQ76_000317"
     CDS             complement(15952..16881)
                     /locus_tag="OQQ76_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000109483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4238 domain-containing protein"
                     /protein_id="HCS1966928.1"
                     /translation="MSVARHHHFLSQCYLKGFTSNGGKKSKLTVIDLKERKTFESNTR
                     NVGGVRDFNRLELDGVDPNYLESSLAEFEGSVATHLRKLEEGGEFSGETKDVILEFIS
                     LLAIRTPAQREHLSSPLKQIAKFIMKSSVSSAERWDDCKLAYEKEMGESLPYDLAYEK
                     IKNFVDGDNFEINVIREFMIDMEMKCVPVITKLLHQRNWSLMTISDGQGSFITSDNPV
                     CLMWTNPELARGPYSPGFGVKDTLVLFPVSKNLLLAGEFDGHEGVFSCNEEQAAVFNT
                     SVIRHTAERIFSSNDNFKFLDSSKKMKQGKSLV"
     gene            complement(16985..19156)
                     /locus_tag="OQQ76_000318"
     CDS             complement(16985..19156)
                     /locus_tag="OQQ76_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000268616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HCS1966929.1"
                     /translation="MAVKASGRFVPPSAFAAGTGKTFTGAYAWNAPREAVGRERPLTR
                     DEMRQVQGVLSTINRLPYFLRSLFTSRYDYIRRNKSPVHGFYFLTSTFQRRLWPRIER
                     VNQRHEMNTDASLLFLAERDHYARLPGMNDKELKKFAARISSQLFMMYEELCDAWVDA
                     HGEKESLFTDEAQAHLYGHVAGAARAFNISPLYWKKYRKGQMTTRQAYSAIARLFNDE
                     WWTHQLKGQRMRWHEALLIAVGEVNKDRSPYASKHAIRDVRARRQANLEFLKSCDLEN
                     RETGERIDLISKVMGSISNPEIRRMELMNTIAGIERYAAAEGDVGMFITLTAPSKYHP
                     TRQVRKGESKTVQLNHGWNDEAFNPKDAQRYLCRIWSLMRTAFKDNDLQVYGLRVVEP
                     HHDGTPHWHMMLFCNPRQRNQIIEIMRRYALKEDGDERGAARNRFQAKHLNRGGAAGY
                     IAKYISKNIDGYALDGQLDNDTGKPLKDTAAAVTAWASTWRIPQFKTVGLPTMGAYRE
                     LRKLPRGVSIADEFDERVEAARAAADSGDFALYISAQGGANVPRDCQTVRVARSPSDE
                     VNEYEEEVERVVGIYAPHLGARHIHITRTTDWRIVPKVPVVEPLTLKSGIAAPRSPVN
                     NCGKFTGGDVPVMHPTPSEHAAAVLNLVDSGVIGWDDPEVVTVLRSALKHGAPRPNWQ
                     QRNCEPLKPYQIAPSGRMTKAERSQIPRIHFELALIGKTYQ"
     gene            complement(19146..19421)
                     /locus_tag="OQQ76_000319"
     CDS             complement(19146..19421)
                     /locus_tag="OQQ76_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5405 family protein"
                     /protein_id="HCS1966930.1"
                     /translation="MSIRIEIGERYVVTSDSFQFILHEKKRAESGKNAGQEWLAVVGY
                     YPKLSQLVSGLMHHDILTGSAKSFADLNAQVEQLSRRCSEAFGSYGR"
     gene            complement(19418..19642)
                     /locus_tag="OQQ76_000320"
     CDS             complement(19418..19642)
                     /locus_tag="OQQ76_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016242005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HCS1966931.1"
                     /translation="MPDNVDFIQEQQTELLERQINAARVKHCGVSSLVCEECDAPIPA
                     ARRAAYPSATRCVSCQSVFEAKNKHYRRMA"
     gene            complement(19642..19944)
                     /locus_tag="OQQ76_000321"
     CDS             complement(19642..19944)
                     /locus_tag="OQQ76_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001277953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5405 family protein"
                     /protein_id="HCS1966932.1"
                     /translation="MSCSRSVVLLNNALKIAVMKNGDLSLIQLGLDKEKREITESVIA
                     IYQNELNLLSDVVNLLVKRAVFHKQISSVDELTKLTTELASYCADEFKKLNDKRNW"
     gene            complement(19944..20168)
                     /locus_tag="OQQ76_000322"
     CDS             complement(19944..20168)
                     /locus_tag="OQQ76_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016236090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2732 family protein"
                     /protein_id="HCS1966933.1"
                     /translation="MHTVSENQCGKYALLLQQARTEAQADAATRFSSHLDAMIRHITK
                     AELSRVEIVELLSQESEKFHNIGLSRGEVL"
     gene            complement(20232..20732)
                     /locus_tag="OQQ76_000323"
     CDS             complement(20232..20732)
                     /locus_tag="OQQ76_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein B"
                     /protein_id="HCS1966934.1"
                     /translation="MTVMTLNLVEKQPAAMRRIIGKHLAVPRWQETCDYYNQMMERER
                     LTVCFHAQLKQRHATMRFEEMNDVERERLVCAIDELRGAFSKRRQVGASEYAYISFLT
                     VSQRRTLFMHAGLTEKEFNQPYWRINEESCYWRDALFRALRELFSLFEYAPTILTSVK
                     PEQYLH"
     gene            complement(20729..20899)
                     /locus_tag="OQQ76_000324"
     CDS             complement(20729..20899)
                     /locus_tag="OQQ76_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001530545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966935.1"
                     /translation="MNEPRCIAQLLRNESPRAIDFTITHGKGRKGIIIRTKKQSPLKK
                     ALTFLKSRRVWK"
     gene            complement(20910..21185)
                     /locus_tag="OQQ76_000325"
     CDS             complement(20910..21185)
                     /locus_tag="OQQ76_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory phage cox family protein"
                     /protein_id="HCS1966936.1"
                     /translation="MSKQVTLMTDAIPYQEFAKLIGKSTGAVRRMIDKGKLPVIDMTD
                     PQSASGRAGEYWVYLPAWNNGLKLAYESRPKEIRDGWLMWLGLGEPR"
     gene            21300..21599
                     /locus_tag="OQQ76_000326"
     CDS             21300..21599
                     /locus_tag="OQQ76_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000020919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1966937.1"
                     /translation="MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTP
                     PTDVMMNILQTPQFTKYTLWFMTNQIAPESGQIAPALAHFGQNETTSPHSGQKTG"
     gene            21715..22728
                     /locus_tag="OQQ76_000327"
     CDS             21715..22728
                     /locus_tag="OQQ76_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001755162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1966938.1"
                     /translation="MAIKKLDDGRYEVDIRPTGRNGKRIRRKFDKKSEAVAFEKYTLY
                     NHHNKEWLSKPTDKRRLSELTQIWWDLKGKHEEHGKSNLGKIEIFTKITNDPCAFQIT
                     KSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKP
                     ETGYLTQEEIALLLAALDGDNKKIAILCLSTGARWGEAARLKAENIIHNRVTFVKTKT
                     NKPRTVPISEAVAKMIADNKRGFLFPDADYPRFRRTMKAIKPDLPTGQATHALRHSFA
                     THFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAISLNPLRGGTEAESVHTVS
                     TVE"
     gene            complement(22994..23311)
                     /locus_tag="OQQ76_000328"
     CDS             complement(22994..23311)
                     /locus_tag="OQQ76_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1966939.1"
                     /translation="MKKIAAISLTSVFLISGCAVHNDETSIGKFGLAYKSNIQRKLDN
                     QYYTEAEASLARGRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFK
                     CGE"
     gene            23717..24616
                     /gene="yegS"
                     /locus_tag="OQQ76_000329"
     CDS             23717..24616
                     /gene="yegS"
                     /locus_tag="OQQ76_000329"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
                     /protein_id="HCS1966940.1"
                     /translation="MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKG
                     DAARFVEEARKLGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATS
                     VGIPEALDKALKLAIAGNAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALG
                     GVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALIND
                     GLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHEITFNLDGEPLSGQ
                     NFHIEILPAALRCRLPPDCPLLR"
     gene            complement(24698..25471)
                     /locus_tag="OQQ76_000330"
     CDS             complement(24698..25471)
                     /locus_tag="OQQ76_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020238881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1966941.1"
                     /translation="MNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLE
                     QKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMTVI
                     LDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHGS
                     IAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISGAMVTAANKVIAVLDSSKFNR
                     RGFNQVLPIEKIDIIITDDAVSEVDKLALQKTRVKLITV"
     gene            complement(25577..26617)
                     /gene="gatD"
                     /locus_tag="OQQ76_000331"
     CDS             complement(25577..26617)
                     /gene="gatD"
                     /locus_tag="OQQ76_000331"
                     /EC_number="1.1.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1966942.1"
                     /translation="MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPR
                     IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ
                     CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE
                     NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKFFGAMQTFNSSEMSAP
                     QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI
                     LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFTQAVRDIA
                     RNAMPGKVLLIP"
     gene            complement(26665..28020)
                     /locus_tag="OQQ76_000332"
     CDS             complement(26665..28020)
                     /locus_tag="OQQ76_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HCS1966943.1"
                     /translation="MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIG
                     IGFVGIGLVIGLMLDSIGPAARAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPI
                     AILVNVAMLLTRMTRVVNIDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKL
                     GDWFARDTRNFFELEGIAIPHGTSAYMGPIAVLVDAIIEKIPGVNRIKFSADDIQRKF
                     GPFGEPVTVGFVMGLIIGILAGYDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK
                     QARSRLQAKFGGQEFLIGLDPALLLGHTAVVSASLIFIPLTILIAVCVPGNQVLPFGD
                     LATIGFFVAMAVAVHRGNLFRTLISGVIIMSITLWIATQTIGLHTQLAANAGALKAGG
                     MVTSMDQGGSPITWLLIQVFSPQNIPGFIIIGAIYLTGIFMTWRRARGFIKQEKVVLA
                     E"
     gene            complement(28024..28308)
                     /gene="gatB"
                     /locus_tag="OQQ76_000333"
     CDS             complement(28024..28308)
                     /gene="gatB"
                     /locus_tag="OQQ76_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIB"
                     /protein_id="HCS1966944.1"
                     /translation="MKRKIIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCRVNEI
                     ETYMDGVHLICTTAKVDRSFGDIPLVHGMPFISGIGIEALQNKILTILQG"
     gene            complement(28339..28791)
                     /gene="gatA"
                     /locus_tag="OQQ76_000334"
     CDS             complement(28339..28791)
                     /gene="gatA"
                     /locus_tag="OQQ76_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIA"
                     /protein_id="HCS1966945.1"
                     /translation="MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIVRE
                     AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVEVSLVIALI
                     VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE"
     gene            complement(28801..30063)
                     /gene="gatZ"
                     /locus_tag="OQQ76_000335"
     CDS             complement(28801..30063)
                     /gene="gatZ"
                     /locus_tag="OQQ76_000335"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatZ"
                     /protein_id="HCS1966946.1"
                     /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE
                     ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA
                     MEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQ
                     REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIA
                     IVVQPGVEFDHSNIIHYQPQEAQALAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA
                     ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF
                     NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQS
                     GELSAIPHQLIMDKIYDVLRAYRYGCAE"
     gene            complement(30092..30946)
                     /gene="gatY"
                     /locus_tag="OQQ76_000336"
     CDS             complement(30092..30946)
                     /gene="gatY"
                     /locus_tag="OQQ76_000336"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatY"
                     /protein_id="HCS1966947.1"
                     /translation="MYVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP
                     VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVM
                     IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADAFYTNPAQA
                     REFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDI
                     QQTIKLGICKINVATELKNAFSQALKNYLTEHPEATDPRDYLQSAKSAMRDVVSKVIA
                     DCGCEGRA"
     gene            complement(31254..32306)
                     /gene="fbaB"
                     /locus_tag="OQQ76_000337"
     CDS             complement(31254..32306)
                     /gene="fbaB"
                     /locus_tag="OQQ76_000337"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HCS1966948.1"
                     /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN
                     RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI
                     EAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG
                     AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA
                     DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL
                     ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL
                     INAVQDVYLDSKITIA"
     gene            32563..33840
                     /locus_tag="OQQ76_000338"
     CDS             32563..33840
                     /locus_tag="OQQ76_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease"
                     /protein_id="HCS1966949.1"
                     /translation="MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYA
                     CTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYS
                     LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQILGYADISPT
                     NIPLLITAGSSALLGVFAFFLPDTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCS
                     FLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL
                     LGLVTAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR
                     TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAII
                     AVLFMIFFRESDNEITAIKVDDRDIALTQGEVK"
     gene            33837..34841
                     /locus_tag="OQQ76_000339"
     CDS             33837..34841
                     /locus_tag="OQQ76_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HCS1966950.1"
                     /translation="MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPG
                     PKENNAACYFNRAEFTDDTSMALCLADALLEREGKIDPNLIGRNILDWALRFDAFNKN
                     VLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALAS
                     SPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSIARHAQQKRITTFSASLAAR
                     LEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCAN
                     LGGDTDTIGAMATAICGALHGINAIDPPLKAELDAVNQLDFNRYATALAKYRQQREAV
                     "
     gene            34838..35788
                     /locus_tag="OQQ76_000340"
     CDS             34838..35788
                     /locus_tag="OQQ76_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1966951.1"
                     /translation="MSGARLHTLLPELTTRQSVMVVGAAVIDVIADAYVLPWRGCDIE
                     LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAE
                     GDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGEL
                     LVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE
                     ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGLAS
                     GLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV"
     gene            complement(35762..36508)
                     /locus_tag="OQQ76_000341"
     CDS             complement(35762..36508)
                     /locus_tag="OQQ76_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1966952.1"
                     /translation="MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHG
                     NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFS
                     QQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESW
                     VPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVI
                     KQVALDQQQRPIEYSISHCRSDLYVFVCEE"
     gene            complement(36560..37378)
                     /locus_tag="OQQ76_000342"
     CDS             complement(36560..37378)
                     /locus_tag="OQQ76_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 25 protein"
                     /protein_id="HCS1966953.1"
                     /translation="MQLRITSRKKLTALLCALGLISIVAIYPRQTVNFFYSTAVQITD
                     YIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKAT
                     EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVAAPVQVRLFLQTVDFSQGDFPAVL
                     DVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH
                     YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQGFVDGIKETP"
     gene            complement(37443..38243)
                     /gene="thiD"
                     /locus_tag="OQQ76_000343"
     CDS             complement(37443..38243)
                     /gene="thiD"
                     /locus_tag="OQQ76_000343"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HCS1966954.1"
                     /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ
                     NTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNV
                     VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE
                     QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA
                     LAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW"
     gene            complement(38240..39028)
                     /gene="thiM"
                     /locus_tag="OQQ76_000344"
     CDS             complement(38240..39028)
                     /gene="thiM"
                     /locus_tag="OQQ76_000344"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HCS1966955.1"
                     /translation="MQVDLLSSAQSAHTLHLFHQHSPLVHCMTNDVVQTFTANTLLAL
                     GASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVEQAKSSQTPWTLDPVA
                     VGALDYRRRFCLELLSHKPTAIRGNASEIMALAGVANGGRGVDTTDAAANAIPAAQTL
                     ARETGAIVVVTGEVDYVTDGHRIVGIHGGDPLMTKVVGTGCALSAVVAACCALPGDML
                     ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA"
     regulatory      complement(39063..39159)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(39251..39523)
                     /gene="rcnR"
                     /locus_tag="OQQ76_000345"
     CDS             complement(39251..39523)
                     /gene="rcnR"
                     /locus_tag="OQQ76_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II)-binding transcriptional repressor
                     RcnR"
                     /protein_id="HCS1966956.1"
                     /translation="MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAA
                     IRGAVNGLMREVIKGHLTEHIVHQGDELKREEDLDVVLKVLDSYIK"
     gene            39644..>39877
                     /gene="rcnA"
                     /locus_tag="OQQ76_000346"
     CDS             39644..>39877
                     /gene="rcnA"
                     /locus_tag="OQQ76_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt efflux protein RcnA"
                     /protein_id="HCS1966957.1"
                     /translation="MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIA
                     IKGTIKQAVMLGLAATISQTAVVWLIAFGGMVIS"
BASE COUNT         9733 a        10632 c         9615 g         9897 t
ORIGIN      
        1 agcggactgt cagattagac tttactctgt gctataggta tgtcagctca tacaacttat
       61 tgcggcattt ccggccattc aggatttgca ggatccacac gactgaccag aacgctgtag
      121 cgttcccatg cttccagtcg gctgcgctcc tcatctgttg ccatattcag cctgacagcg
      181 cgctccagcg gcaaaatcac ggattcagct tcggaaagta aagttgcctt ttgtgattct
      241 gccagttgct gctgttcgtc tgccgtataa atccgcttaa tcacggcacc atccttaaac
      301 atccatttac ctgagtcatc agcacgtcgg ttggcggtaa tatcaggaac ctcgacaacg
      361 ctaaaacctt cagggttaag cgttgaagca tctctggtga tgccgacaat tatattattc
      421 tcgtcgtaaa caatctttat cgtgtcttcc tgaaaattac ttacttcctc ataccagttt
      481 tttccgtctt cagaccataa ccagataaca tcaaaatttt ttgtcagttg atattgggca
      541 acagttttgg gattacccgc agtaatattt tttaaatgct gcataaatta cacctgtgcg
      601 acgttatacc atgtgccatt aatgtatttt tgtattggtc tgaatactgc cggatcatcg
      661 ccatcaactt cgccgacaat gccaagccct gtaattacat ggcctgattt ctcatacatc
      721 acgccttttt gcatggtctg aacaacacgc gtacccaggc gaacatcttt cacatagcgg
      781 gaatcaaaat ttccgtaatc tgatgggtta acacgtccag taacactcag gccatgcccc
      841 attgacactc cgccattggc gttattgata gtcagcggtc ttaaaccgtt ccatgttcca
      901 aatttatcgc cagaggccgt cagcattaaa tatgtgctgc cgccatcatt cctgataaag
      961 aatccataat tgccataagc aatgcgcaga ccattagcac tgagcgatgt aatttcacct
     1021 cttgaacgaa gaccataagc agagctgagt gataattctt cctgagcatc agtattacct
     1081 gtcgcccagc gaattacccc gccctgtact gtttcatgcc agatagtgtc tccttctcca
     1141 ccacgaaact ttctgagata ttttttgccg cctctggtgc cggaacataa ggccgtagac
     1201 atataggcat tctggcttcc actatcctga ttaatagttc cagacataga atcgccgtaa
     1261 cggttccagt cacgccgcca gccaggagca tagttgtccc cgtggttaat ataagtaaat
     1321 tgcgcgcttg tagcgccccc accgcttgat gttgttggtg tggtaatacg aatagtcatt
     1381 gcagacttta tgcccattac ctcaataaca gcgccagcaa gatgaatatt gccacagcca
     1441 gtatccgtaa tgattttgtt atttgcatat gaccaggagc ctttgcacat ccagtacgga
     1501 tgattaaatg caccacggga atccagccat tcaataaact gagcggttgt ccagtttccg
     1561 gcttcagtgc tcaaagcgcc gctataagca cgacaggcac cgatattttt cgtgaaggta
     1621 tcctttcccg gaatatccgc accgttctga tctttctgaa gacgtttttc agcattgtca
     1681 taggcagact tcaccgcctt tggcgttgca gcctgcgttt cagaatcact gttggtggcg
     1741 ctactgagct ggacaagacc ttttcgcgcc gtggtggcat cctgtgcagt gtatttcccg
     1801 ttagcaaggt catatgctgt cttaaccgcc tttggcgttg ccgcaagcgt ttcagaatcg
     1861 ctgttggtgg cgctactgag ctgaacaagg ccttttcgcg ctgttgtggc atcctgtgca
     1921 gtgtatttcc cgttagcaag gtcatatgct gcctttaccg ctttcggcgt tgcggcgagc
     1981 gtttcagacg tgctgttagt cgcactactg agctgaacaa ggccttttcg cgcggtggta
     2041 gcgtcctgtg cggtatattt cccgttagca aggtcatatg cggccttaac cgctttcgga
     2101 gttgcagcca gtgtttcaga cgtgctgttg gtcgcactgc ttaactgagt aaaacctttt
     2161 gcggtcagcg aggcgtcagg gtgacgtcgt gactgttcat gttctgcaat tttgtcatca
     2221 acgtaatcct gcgttgccat caccgttgtg gtgtcaatgg tcagctccac tgaggccaca
     2281 ctgctgacga tgatgaccat gcggcaggtc tgcgaacgcc ctgagccttc ggcaagggct
     2341 ggcttataac tttcggccat gttcgccacg gcaattagcg ttcccgcatc atcgtacagg
     2401 ccaagttcac gcatccagaa accgcccacc tccggcggaa taaccagctc tgcgataata
     2461 taattactgt ttcgtttgtc ctggctgatt ttgttcagcg catgtcgcca gacttcatgg
     2521 ataagcccgg tctgtccggc atccgggaca ggcaatttac caccgccatc cccgacggcc
     2581 atcgtggtaa tgttgacctt ccgccctccc ggtgcggttg ccgctgccag ctttgctgca
     2641 ccggcagtgg tgataacggt tttgaatttt gtgctcatta ttcctcactt atccggggta
     2701 aaccgtaatt acatcgccgt cgtaagccac accaccggcg aacaggtagc cgggaatatc
     2761 ccgggtaatg ttcaggccaa taagatgacg gcttgcaggt ttggcatcag caataagccg
     2821 ttccatttcc tgatacattg cctctgtgat gccgctttcc agtacgccaa tatcaagccg
     2881 gaaggtgcct ggcgggtcac tggtttccca ccactccgtc acgttgatga gatagcccag
     2941 cggctccacc acacgccgga ttgcacctat agtgccttta tgacagtgga tgaaataggc
     3001 atcgcgaata acggcgcgtt tggtcgcttc cggccacttt tcatcccacc tgtcgaccga
     3061 aaacgcccac gccagccacg gcagcagatt tgccggacag gtatccgggt tccacagatc
     3121 acgaatactg accggcgttt tttcaatttc cgcacaggct tttgcggcgg cgacttcaag
     3181 cggtgatgag ccggtcggca gcaggcgcga atcactcatc cgagcctccg gtcacgacgc
     3241 ggtattcggt acagaaagac gcctgcgtac tgttgagcac aatgtcggcc agtggtgcag
     3301 ccagttcgac acgctgcacg ccttccacat gcaaagcggc ataaatggca gacagacgga
     3361 tgtcgcgccc cagccggtgc tgtgccgtga tgtacgcttc cagttttttc acggcggcag
     3421 cgcggatggg ttcgctttcg ggaccagggt aaaggtaaag cgtggcgttt atctggtatt
     3481 caacgatggc ggcagactgc acggtcacgc ggtcggctac cggcctgacg tcctcgccat
     3541 taagggcgtt acgcaccacc gccagcaggt cttcggatgc gacaccgtta ttttcacgtg
     3601 acagcacaga gatggtgacg caggccggag aaggactggt gacagagata tctgcgacac
     3661 gcccgtcggc acttcgacca tgatactgat aggcccccac cgacccggcg acgcttaaac
     3721 cttcaaacgc ctgctgaata cgcagacgat aatcggtgtc agattccatc tcggccggtg
     3781 tcggcgggag ggtcgaatca tctgccgggg tgataatcag gcgcgcggtg ttgtaattgg
     3841 caccaatcac atcaaggtca ttaccggcag cacaggccag catcaccgcc cgtgcggcct
     3901 cattcacacg ctgacgccag ataagctcac gataagcatt ttcctccagc agtttgacga
     3961 gaggctcaga ttcaagcgtc agggtacggg cgaccgcctc ctgctggtct tccgggtaaa
     4021 gggaaatcag tgtcgccttg cgttcggcaa gaatggtttc aaagtccagc tcctcgacca
     4081 catccggtgc gggtagctgg ttcaggtcga taatcggcat ggtttcaact cacagggatg
     4141 gttaacgaaa gtggctggcc ggtgtcgttg tgctgaccgg ttaacgtgac cgtcattcgc
     4201 ccgtcaaaac tgcgcgccgt ggtgacggat gacagggtga cgcggggttc ccatttcagc
     4261 actgccatgt aacaggcgac cttaatctgc aactcaagcg ccggggtctg cggctggtca
     4321 atcattgatg ccagcaacga gccgtaatca cgacgcatca cccgtgagcc gaccggtgtg
     4381 cgcaggatat cgccgatact ctggctgata tgctcaaggt cagtgaccgt caggccatca
     4441 ctgcgattca ttccgagata acgcgctgtc atagaggact cccggttgtg ccgccgctgt
     4501 cgccggggtg tttatgggta tgcagtacct tcccgtttga tgaaagttca ccgccggtgt
     4561 gttcaatgtt gccgcgcatc gtcccgccct tctgcacttc cagcgtgccg gtaatcagct
     4621 tgttggtgca gaccacctcc ggtgtgtcca gggtgacgcg ggttgatgct ttcaccatga
     4681 ccaccggcac cgtggcagta acagaatcag aagccgtcac gctggccgtt ttaattccgc
     4741 ttaccgtgag tgcactggtt tcaggttcat actcaatcac cgccccgtca gggaaacgga
     4801 tatgcagggc atccgccgac gccgacggcg cggggttatc gccggaataa atccccggca
     4861 gaacgaacgc cgtgtcgagt tcaccgccca cggccagaat cagcacctgt tcccccacgg
     4921 aaggtgccca ccatgtgcgc gaacgaccgg cgcgatgggt cagccactga agccagtcgg
     4981 tgcacatgcc gccggtctgc acacggcagc gaccggcatt aaggtcggtt tcgacgataa
     5041 tgccagtgcg aatcatattg cgtataaagc gaagaatttc attgtattgt gcattcattc
     5101 gataataatg attctgtaca atctcgaagt aaatcacacc acgatttctg gtgcacagaa
     5161 caacaaggga caacaaaatc cattatgagt acttactttt tctcgtcaga aacaatgaaa
     5221 gaattgttca aagattatct ggtctttttg aacacgctga ctcccggcac aaactttgaa
     5281 tcaagcagaa acaaaataat tgctcaagca ataaacttca tttccgaaaa ccctgaagat
     5341 tgggacaaaa aatcccagta caacattgct atgattggcg acacctttaa aagtttctta
     5401 agagaaaagg gagaagataa caacagcatc aaccttatat tcacttgctt ttttagattt
     5461 atcattgaac caagcattct ctctccggaa atagagtctc acttttcacc actaagaacc
     5521 atcaaggatt ttgctctgta taactataat gaattcgatg agcggagcag agcacagata
     5581 gacttttctc ttagagaact gccattagca atggttaaag aagttttaag ctccagcaat
     5641 gttgacacat ataaaaaata cattgatagt ttaaacgaag ggcgtcaatt tttcgaaaag
     5701 tgcgactcct tcttaaagga gcaacatgcc aaaatagagt caatcaaaga gtcattaaaa
     5761 gggtatgagg tcgcatttaa ttttgttgga ttgtttgaag gctttaattc acttggcaaa
     5821 aagaaagaaa gtgaaatcat gctatcaaga ataattctta tcatcttggc tataatcatt
     5881 ccctccccgc tgatatacta tggaatgcat aaattaccag ctctcgaaac gacaaatgct
     5941 gccacatatt ttatgtcagc actacctttt gcatcagtta cattgatttt catgtattac
     6001 tttagagttg tactgctaaa tcatatatcg ttacgaactc agattatgca aatagaactc
     6061 agaaagagcc tttgtcagtt cattcagagt tatagcgact attcctcaga gataaggaaa
     6121 aacaatccgg aagcgctttc aaaattcgaa gacgtagtat tttcaaacat catgctatcc
     6181 gatgataaga taccatctac atttgatggc attgagcaaa tagcatcgtt aatcaattca
     6241 ttaaaaaatg gaaagtaatg ataaaaggcc aataactggc cttttattta ttaacatgaa
     6301 aattcaaaat aaattatgct aatcaattga tttctatctt atattctcag atgattaaag
     6361 ctaacgattc aggtgagcca ggataatctc ttcaatcatc tgcacatcct caccggtaaa
     6421 gccgagcaga ggacgcgccg gatattcaat tttcttaccg tctttccggg tttcttccga
     6481 cagaccgaac tgatgcacac tggctatttt cggtgacttc ccgccgtaaa actccattga
     6541 tgcctgttca gggctggcgc ggatatgcaa aaaacgactg gtgataagtt tcgcaaacat
     6601 ttttcgctta acgcgaccgg tcttttttct ggcgctctgc tgctggcgtg gtgcgtaggg
     6661 tgtgccgtcc ggggctttct gtgccatcac ccgacgctgc tgactctgac gcagacgttt
     6721 cgccagttcg gcgctcagtc gccgacgccc tgacggtgac agcgactcaa tcagtccggt
     6781 cagcctgtct tcaaaacgct taaactcatt catcccactt actcaccagt tcgccattga
     6841 tataaagctc catcgggcgg gtgaccggct ccggcggcgg aggttccggg atattcttca
     6901 catgcagcgc gccgtccacc tcactgacca gcgtgcgctc ggtcagcatc aggctgatgc
     6961 tgatatcaaa gctgctgtca ttgttgatgt ctgcataaaa cgtgaagccc tttttctggc
     7021 cttcgtcggt ggtcatgatg tcgggctgat tttcccgcag ccacgccagc accggcacga
     7081 tgagcaggtc aaaatcaccg gtaaagtcgg tcacaatgac attgagcgtg taacgctttt
     7141 cgaacgacag cgacgtcgcc agtgtggagg caatactccc gttatccacg aatatccgca
     7201 gcatatcggg gttagttttc agcaccgtga cggcatcagt cagcgccctg cgcaggctgt
     7261 cgggtttgag catcgttttc gtcctgacag tgtttaatca tttttacctg gctggcacag
     7321 cgtgccagcg cgttctcaag ctgccggata tcggcactta aatcgccgtt cttctgcggg
     7381 tcactgcccg gcatcgggca aaggctcact ttcgggcagg cgttggcgac aatcactggc
     7441 gtcagtgcag gccggacgct ggtgcaaccg gcgcacagca tcaggcaggt cagcgccata
     7501 ccagcggcgg aaatcctcgt tttcattaag taacctcgtg atggttttct cgcgcagtgc
     7561 ttcacgcttc gcggcgttct ccagttcctg acgcagtgcc acctgcgcca gctcgttttt
     7621 gtctgccctg gtgagtgcaa catgaagctg atttttcagc atggtgatgg tcgtctgctg
     7681 cccgctggcg acgctgttcg ccctgtccag tgaggtgcgc aggctggcat tttcatgctt
     7741 caccagaaac agccccggca ccgccagtga taacaacaca accagcacaa tcatcagctt
     7801 tgacatggtt cccgcccctc aaaacgctga cggcaggccg tacgtatcag ccggaagaac
     7861 accgacgcca caagataaat cagcgcggta aaaatccacc cggcagcgac cagcgcgata
     7921 aacgtcgcca ccatcaccac cagagccgcc gcccgtctgc gccacggcac cggctgcaaa
     7981 aacagcgacg tgacaatctt cacggccagc gattccggcg gcagctcccg cccgtagcgt
     8041 tccagcacat actcagtggc atacaccccg acaccaccgg taaccacaca gataaccgtc
     8101 gccagaatcg cccaggcggc gacaaaattg acggccacgc tctgcgggta aatcagggac
     8161 agtgccagca tcagcgccag cgacacgttc agcatctgtg aaagggataa tttcttcatg
     8221 gtgtttactc cgtttaagcc ggtacgccgc cagcggtacg ccagacggtg accagttttt
     8281 ccagtgaatg ctcacgctga ccgtaaccgg cacccggcag ggacgcccag atattgcgac
     8341 agcgtgaaat ggcgcgctca atacgtcccg cccggatgtc atccagcgca ccgcgttcgc
     8401 ggatcaactg aatggcgagt ctgtcctgtg acaacggact gaaatccggc agggcaagct
     8461 gtttgcggta atgcggccag aacaggtaaa gctgctgata gcgaccggag gccgtggatt
     8521 tttcaccgcg acggttaaac accttcgccg gtcggccatg tgcgaacggg tggtcactgt
     8581 agtcggtgaa aatttccggc tttccgtcca gtccggtgac tatcacgtca tagccccggt
     8641 ttttcgtcag cggatggttc gccgtccctt cggacacggc cagcatgtcg agaaaggcgg
     8701 cgatattctg atgcgtgtta ataaccggca ttacggtttc cccctgccct taaagcggcg
     8761 ctgaatggca atctcaatca cctgataacc ggcgataccc agcatggagc cgatgccgca
     8821 caccgcaggc aatgacaggt caggaaactg caccagaaca acaccggcaa ccatcgagac
     8881 aaaaccaccg agcaacatgc gcccgataaa cagacgcggg gtgatgggtt caccaccggc
     8941 aagcaccttg ccgacaacaa tcagcacccc aatcatgaaa agcgacagga cgcttttttc
     9001 ttctgctgtc atgcgttact cccacagatt gacagtttca gccacgggcg cggtctgaac
     9061 gtcgggcagt tcgacggcgg tgccgtgcgg cagcaccgcg cccagttcag ccagtcccgg
     9121 atttgcggcg agcacggtct caaccacgcc ctcagtgcgc ccgtaatacc ggacacaaat
     9181 ggcgtcgagc gtgtcgccct gtagcgcaaa ggtcttcatc agatttgact cacgatgcag
     9241 cgcggcttgt cctggatgcg cgccaccgcc cagcgcatat cccgccacag ctcatcaatg
     9301 gtgctgtcaa tgctgtcagc cttcttgtcg cctttcgcac tggcatccac gccgcgataa
     9361 cgctcataca gcgacgcggt cgccatcgca cacacggcgc gctcgtagta aaaaaccctg
     9421 atgctttcac cgtcgatgtc gtccgccggg acgtccgcca gacgcgtaaa accggcggca
     9481 attttctgtt cgcggtactc gtacagctcc gcatttgttt ccgccatgcc tgacttgatg
     9541 gcctcacgca gacgggcggg ggcgacagtc tgctcaaggc gcatacgttc ccggacgcgc
     9601 ttcgggtcga tatcgggaaa aaagaacgtg tttttaatca ccggctcgtc gcctgccggt
     9661 tgcgggatga ccaccgtacc ctcaccggac acgggagcct cctttcgcgg aataatcagc
     9721 gtcatcatga ctacctctga aaagtcgggc ggtggacgcc ggtgcagtgt cagatgattc
     9781 accctcactg accggcgtgc cgccctggcg cggggcgcat tcggttgtta actggctttc
     9841 tttttcgggc gtccacgttt tgccggtgtc acgctccggg tcttacgcgg ggtacgggtg
     9901 gccgcttttg gctgcggctg cggctccggc ttcggtttca gctcccgctc cagtcgttca
     9961 atctcttttt tgacgcctgc ctgacagtcg agctgtgtcg cacgttgcag gtgcgccagc
    10021 gcaccggcgg catcaccacc gtcacgcaga aacagaccgg tgattttgtg cagctttgcg
    10081 cgcacttcat caggcatgtc agcagcggca gtcagttcaa gggtctccgt cagcaggcgg
    10141 gtatccacag actcaccggc agcgtgggca cgcatggccg caagcgcgac ctcctcggtg
    10201 aacatgtacg gcggggtgcg gcggtgttta cccggcatgg tcagaccgta cttcagggca
    10261 taacgggcaa tctccagcgc accggcaata tcgccggtat ccagacgcca cagcatgacc
    10321 gtcatcagaa tgtcatcctg tgcacctttg ccctgctcca gcacgccgtt cacccacggc
    10381 aaccagaacg gcagcagttc gcgttttttc gcggccttca gctcttttga ataaatcgct
    10441 ttcagtgtgc gctggtctgc ggcgagctta accagcatct gctcatagac agttgcatgt
    10501 cgcagcgggg cggcttcccg ctgcgcggtc atcgctgccg agacccgcat catgtggcgc
    10561 tgtgcgggac tcgtcatcgg ttacgctccc ggctctgcgg tcgctttagc cggtgtggag
    10621 aagtcaccga ccttgatttt ttccaccaga caaccggcgg cgtagtcttc caccacgtaa
    10681 tcaatgttca ttgactcgta gttctccacg cggtcgagtt tcgggttttc cacaatcacg
    10741 cggcgatggc tgtcatccat gtagtagatg gacaggtttt ccagcttcgt gatgagcatc
    10801 gcatccgccg ggaagtacgg gacgcgcact gccggcaggt taccgatgcg tttctggctg
    10861 atgatgacgt cagcggccag catctcgctg ttgtcctgct ccttgttgac gatggggaaa
    10921 tacttgtccg ccagtagctg acgccccaca atcaccacaa ggtcagggtc ttcctgatac
    10981 cacggctcaa tcaggttgtt ggtcgcatcc atcaccagtg catcgaggct ggcataatca
    11041 ccgcccttac ccacgcggat gacctcagag gtcgtgtgac cttcctcgtc agtaaccttg
    11101 ctcatcacgc gcgccggggc ttcattgcgg tatttctgca gccagccgac cgccacatcc
    11161 tgcagcatct ggttactgct gcggtcagag gtttcggcac gcctcacgcc gttaaaaccg
    11221 gccatgatta aatcaaggga ctggcgtttg ataatggcgt tacggacacg gagctggaaa
    11281 tcctgataac gcgcccacag gtccagcgtt ttgtagcgga tataaaaatc gaagttaatc
    11341 tggtcgcatt cgtacttgtt tgacgccagc ttcgagaagt ccttcggctg acgctcggtg
    11401 ccaccggcgg tgtcggtggt gctggcgatg gagccggtga caccaatacc aattttttcc
    11461 cctttcattt cgctgaccgg cacaatgttg atgcgggtca gaaagtcaga ggactcctgc
    11521 atggtgttca tcagggtctg ggtgaccgac ggttcaacgg tgaatttttt cgacacatca
    11581 ccggcgtcga tgccgttcag ttcggcaaca cgggacaggt aggcattaaa tttaaagcgg
    11641 gtttcctggc gcatagtttt tcctgaaatt aagggttaat cgtgaaggtt ttcccggact
    11701 gactgacgcc ggtcagcagt tcgtcatcag ggcgtcaccg ccaccaccgg tggccttgct
    11761 gcggcgctgc tgggtcagac tttcggtgtt gtcgagactg tttttcaggc ggctgaatgc
    11821 ctgactggtt tcatccgccc tgtcagtcac ctcctgctta agtgcggaaa aggcggtttc
    11881 cacctcagcg aggcgctgct cagtggcgct cagtttttcc tgcacatgtt cagcaacagc
    11941 ggtcaccgct tcatgcacgt cattcagacg ggcgtcatcg ctggcctgtt tgcggccaaa
    12001 aatggatttc accttttcgg tcagggcggt gaacacggtt tcaggcaggt cttcaaattc
    12061 cagctcaacg ggcgttgcca ctgaaatcag gttttcaggg cttaatttga agcggttcag
    12121 ggggttgtgt tttgccgtgc ggcagaattc caggtattcc gtgccgaggc ttgccgggtc
    12181 atcggtgacg gccagcccca ccagataaca tttgccggtg ttggcaaagt tcggctgaat
    12241 ttccattgag gtgtagacct tctgcgcggc cttgttcatc gcgataaggt catcggtcgg
    12301 ggtgattttc gcaaacagcg cccatttgcc tttcagcgcc gaatcgtcat caatcttttc
    12361 ggccttcagt tcgaccacat cgccataacg tttaaaaata ccgtcaggca ggatgccgcg
    12421 cagatgttcc aggttaatgc ggcaaccgta gacacgcggg tcaaaggttt cggccatttc
    12481 ctgaatatcc tgcgcactga tgacacgccc gtcacaggtg tcaccctcaa cgccgatacg
    12541 aaagaatttt gagacttttt ttgccattgt caggagtcct gaatagtgat tagaggagtc
    12601 acatgtcggc atcagtttcc cgacgatgcg catcctccgc catcagtccc ggatggctta
    12661 tcactgacac aacagcacct tagcgaatcg cggggcgcga ctcagtagcc ttgccgtgta
    12721 ttcatcacgg cgaggtattc atgaccatca ccacagacac cactctttta cacgacccgc
    12781 gtcgtcaggc ggcgctgctg tactggcagg gattttccgt gccgcagatt gccgccatgt
    12841 tgcagatgaa acgcccgacg gtgcagagct ggaagcagcg cgacggctgg gacagcgttg
    12901 cccccatcag ccgtgtcgaa atgagtctgg aagcgcggct gacccagctc atcatcaaac
    12961 cgcagaaaac cggcggtgac ttcaaggaaa ttgacctgct cggacgccag attgaacgac
    13021 tggcacgggt caaccgttac agtcagaccg gcaacgaggc agaccttaat ccgaacgtcg
    13081 ctaaccgcaa caaaggcggg cgtcgcaaac cgaaaaagaa ttttttcagt gacgaggcca
    13141 tcgaaaagct ggagcagatt ttctttgagc agtctttcga ctatcagttg cactggtatc
    13201 gcgccgggct tgagcaccgc atccgcgata tcctgaaatc ccgccagatt ggcgcgacgt
    13261 tttatttttc ccgcgaggcg ctgctgcgcg ccctgaaaac cggccataac cagatttttc
    13321 tgtcggccag taaaacgcag gcgtatgtgt tccgtgaata catcatcgcc tttgcccgtc
    13381 tggttgacgt tgaccttacc ggtgacccga ttgtcctggg caataacggc gcaaaactga
    13441 tttttctcgg caccaactcc aacaccgcac agagccataa cggcgacctg tacgtcgatg
    13501 agattttctg gatcccgaat tttcaggtac tgcgtaaggt ggcatcaggt atggcctcac
    13561 agagccacct gcgctcgacc tatttctcca ccccgtccac gctggcgcac gacgcctacc
    13621 cgttctggtc gggtgaactg ttcaaccggg gacgcgccag cgccgccgaa cgcgtggaaa
    13681 tcgacgtcag tcataacgcc cttgccggag gtcttctctg tgcggacggc cagtggcggc
    13741 agattgtcac cattgaggac gccctgaaag gcggctgcac gctgttcgac attgagcagc
    13801 tcaaacgcga aaacagcgcc gacgatttta aaaacctgtt catgtgtgaa tttgttgacg
    13861 acaaggcatc ggtgttcccg ttcgaggagc tgcaacgctg catggtcgac acgctggaag
    13921 aatgggaaga ctatgcaccc tttgccgcca atccgttcgg ctcccgcccg gtatggattg
    13981 gttacgaccc gtcacaccgt ggcgacagtg ccggatgcgt ggtgctggca ccgccggtgg
    14041 tggccggtgg caaattcaga atacttgagc gtcaccagtg gaaaggcatg gactttgcca
    14101 cccaggctga atccatccgc aaactcaccg aaaaatataa cgtcgaatac atcggtattg
    14161 atgccaccgg cctcggtgtc ggcgtgttcc agctcgtgcg ctcgttctat cctgccgcgc
    14221 gcgatatccg ctacacaccg gaaatgaaaa ccgcaatggt gctcaaggca aaagacgtta
    14281 tccgccgtgg ctgtctggaa tatgacgtca gcgccaccga catcaccagc tcgtttatgg
    14341 ctatccgcaa gaccatgacc agcagcgaac gcatcgccac ctatgaggcc agccgcagcg
    14401 aggaagccag ccacgccgac ctcgcctggg cgaccatgca cgccctgtta aatgagccac
    14461 tcaccgccgg tatcagcacc ccgctgacat ccaccattct ggagttttac tgatgagcaa
    14521 gaaaaaaggg aaaacaccgc aacctgcggc aaaaaaaatg accgccagcg ccccgaaaat
    14581 ggaggcattc acctttggtg agccggtgcc ggtactcgac cgccgtgaca ttctggatta
    14641 cgtcgagtgc atcagtaacg gcagatggta tgagccaccg gtcagcttta ccggtctggc
    14701 aaaaagtctg cgtgctgccg tgcatcacag ctcaccgatt tacgttaaac gcaatattct
    14761 ggcctcgaca tttatcccgc atccgtggct ttcccagcag gatttcagcc gctttgtgct
    14821 ggattttctg gtgttcggta atgcgtttct ggaaaagcga tacagcacca ccggtaaggt
    14881 catcagactg gaaacctcac cggcaaaata tacccgccgt ggtgtggagg aggatgttta
    14941 ctggtgggta ccgtccttca acgagccgac acctttcacg cccggctccg tatttcacct
    15001 gctggagccc gatattaatc aggagctgta cggcctgccg gaatatctca gcgcccttaa
    15061 ctctgcctgg ctgaatgaat cggccacgct gttccgccgc aagtattacg aaaacggcgc
    15121 acatgccgga tacatcatgt acgtcaccga tgccgtgcag gatcgcaacg atatcgaaat
    15181 gctccgcgaa aacatggtga agtcgaaagg ccgcaacaac tttaaaaacc tgtttctcta
    15241 tgccccacag gggaaagccg acggcattaa aattatcccg ctcagtgaag tggcaacgaa
    15301 ggacgatttt tttaatatca aaaaagccag cgccgctgac ctgctggacg cgcaccgcat
    15361 cccctttcag ttgatgggcg gcaagccgga gaacgtcggg tcgctgggcg atattgagaa
    15421 agtggcaaag gtctttgtcc gcaatgagct tatcccgcta caggacagga tccgcgagat
    15481 aaacggctgg ctcggccagg aagtcatccg ctttaaaaac tactcactgg acactgacaa
    15541 cagctgaaca tcgccgcctg cgggcggctt ttttacaccc cgtcatcacg ccctcatacg
    15601 ctcaccaccg cacaaaacac cccgcagaca caccaacggc cccggcgaac aatctaaacg
    15661 ccatcacgac gcgctcagac gctgaaaaaa taaaatcagc accaccgcca gcgcgcagtg
    15721 ctttccccgc ctcgcccgcc cgctttatgg gtcggtttta atgcaggtgc acgaatacac
    15781 cggaggcgcg ccggcactgg tggcgctcag acgcaacagg ggaggaaaac gcatgcaatt
    15841 gaatgcattt ctaggcacac ctaaaaatga aaaaatgtta tgacaattaa tcattttaaa
    15901 cacactgatt aagggtagaa ttctcctagt aaaatcatag aaaaaccgct atcaaaccag
    15961 gcttttgcct tgcttcattt ttttagatga gtctaaaaat ttgaaattat cattagatga
    16021 aaatattctt tctgcggtat gccgaatgac tgaagtattg aagaccgcag cctgctcctc
    16081 attacaactg aatacaccct catgaccatc aaactcgccc gccaaaagaa ggttttttga
    16141 tactgggaac aaaactaaag tgtcttttac accaaacccg ggggaataag ggcctcgtgc
    16201 taattcagga ttagtccaca ttaagcaaac tgggttatct gaagttataa atgacccttg
    16261 cccatcagat atggtcataa gtgaccagtt gcgttgatgc aacaacttgg tgataacagg
    16321 tacacatttc atttccatat ctatcatgaa ctctctgatt acattgattt cgaaattatc
    16381 cccatccaca aaatttttaa ttttttcgta agcgagatca tatggcaaag actcacccat
    16441 ttctttctca taagctaatt tgcaatcgtc ccaacgctca gccgaactaa ctgaggattt
    16501 catgataaac tttgctattt gtttcaatgg agatgataaa tgttctcgct gagcaggcgt
    16561 acgtattgcc aataaggaaa taaactccag aataacatct ttggtttcgc ctgaaaactc
    16621 gcccccctcc tcaagttttc ttaaatgagt agcgacactg ccttcaaact ctgcaagaga
    16681 actctcgaga tagtttgggt caactccatc caattctaat cggttgaaat ctctaacccc
    16741 cccgacattg cgagtattac tctcaaaggt tttgcgctcc tttaaatcta ttacagttaa
    16801 ttttgatttt ttccccccat tacttgtaaa ccctttcaaa taacattggg ataaaaaatg
    16861 atgatgcctt gcaacactca tactcagctc cgttatggct ataatcgcat aaataataag
    16921 cacttatatt gcaatcatct agttaaatac acaatattta tgactccgaa atttcattaa
    16981 atcactattg ataggtttta ccaattagtg ccagctcgaa atggatgcgt ggaatctgcg
    17041 aacgttcagc ctttgtcatc cgccctgatg gcgctatctg gtacggtttt aatggttcgc
    17101 agtttctttg ttgccaattc ggtctcggtg caccatgttt taatgcactc ctgagcaccg
    17161 tcacaacttc cgggtcatcc catccgataa caccactatc aaccagattt aacaccgctg
    17221 cggcatgctc agacggtgta gggtgcataa ccggaacgtc accgccggtg aactttccac
    17281 agttattgac aggactccga ggcgcggcga tgccgctttt taaagtcaaa ggctcaacga
    17341 ccggcacttt cggcacaatg cgccagtccg tcgttctggt gatatgaata tgacgcgcgc
    17401 cgagatgcgg cgcgtaaatg ccgaccactc tctcgacttc ttcctcgtac tcgttaactt
    17461 catccgacgg gctacgggcg accctgacag tctgacaatc gcgcgggaca tttgccccac
    17521 cctgcgcgct gatatacaac gcaaaatcac cactgtctgc ggcggcgcga gcagcctcga
    17581 cgcgctcgtc aaactcatca gcaatgctga cgccgcgcgg caatttgcgt agttcacggt
    17641 aagcccccat tgtcggcaga ccaaccgttt taaattgtgg gatgcgccac gttgacgccc
    17701 atgcggtaac agccgcggca gtatctttaa gcggcttacc ggtatcgtta tcgagctgac
    17761 catccagtgc atagccgtcg atattttttg agatgtattt cgcgatatac cccgcagcac
    17821 cgccccggtt aaggtgtttc gcctgaaaac ggtttcgcgc agctcctctt tcgtcgccat
    17881 cctctttgag cgcatagcga cgcatgattt cgataatctg gttacgctgg cgcggattac
    17941 aaaaaagcat catatgccag tgcggcgttc cgtcgtggtg tggctcgacg acacgcaaac
    18001 cgtagacctg taaatcatta tccttgaatg ccgtgcgcat caggctccag atacggcaga
    18061 gataacgctg cgcatccttt ggattaaatg cctcatcgtt ccagccgtga tttagctgga
    18121 cggttttact ttcgcctttt ctgacctgac gtgtcgggtg atactttgac ggcgcggtca
    18181 gcgtgataaa catccccaca tcaccctctg ctgcggcgta acgctcaata ccggcaatgg
    18241 tgttcatcag ctccatccgg cgaatttcag gattagaaat actgcccatc accttactga
    18301 taaggtcgat gcgctcgccg gtttccctgt tttcaaggtc acatgattta agaaattcca
    18361 gatttgcctg gcggcgcgca cgcacatcac gaatggcatg tttactggca taaggagaac
    18421 ggtctttatt gacctccccg acagctatca gtaacgcctc atgccagcgc atacgctggc
    18481 ctttaagctg atgagtccac cactcatcgt taaacaggcg ggcaatggca gaatatgcct
    18541 gcctcgtggt catctgtcct ttacggtatt ttttccagta gagcggggaa atattgaaag
    18601 cacgtgcagc gccagcaaca tgaccataaa ggtgagcctg cgcctcatcc gtaaacagcg
    18661 attctttttc gccatgtgca tcaacccagg catcgcagag ttcctcatac atcatgaaaa
    18721 gctgcgatga gatacgggca gcaaactttt tcagctcctt gtcattcatt cccggcaggc
    18781 gcgcatagtg gtcacgctct gccagaaaca gcaacgacgc gtcggtgttc atttcatggc
    18841 gctgattcac acgctcaatg cgcggccata aacgacgctg aaaagtggat gtgaggaaat
    18901 aaaacccgtg caccgggctt ttattgcgcc ggatgtagtc ataacgtgaa gtaaacagcg
    18961 agcgcaaaaa gtaaggcagg cggttaatcg tggataaaac accttgcacc tgacgcatct
    19021 cgtcacgtgt aaggggtctt tcgcgcccga cagcctcgcg tggcgcgttc catgcataag
    19081 caccggtaaa cgtcttaccg gtgcctgcgg caaatgctga cggagggaca aaacgcccgg
    19141 aggctttaac ggccatatga gccaaaagcc tctgaacaac gcctgctgag ttgctcaacc
    19201 tgcgcgttta aatcagcaaa agactttgcg cttccggtca gaatatcgtg atgcatcagg
    19261 ccggaaacga gctggcttaa tttcgggtaa taaccaacca ccgccagcca ttcctgaccg
    19321 gcgtttttac cgctttccgc tctctttttc tcgtggagaa taaactgaaa gctgtcactg
    19381 gtaacgacat aacgttcgcc aatttcaata cgaatgctca tgccattctc cggtaatgtt
    19441 tgttttttgc ttcaaagact gactgacagg aaacacaacg cgtggctgac ggataagccg
    19501 cacgacgggc agcaggtatt ggcgcgtcac actcttcgca aaccagcgaa gaaacaccgc
    19561 aatgttttac ccttgccgcg ttaatctggc gctccagtaa ttcagtctgt tgttcctgaa
    19621 taaaatctac gttgtccggc attaccagtt ccttttgtcg ttcagttttt taaattcatc
    19681 agcgcaatag ctggcaagtt ctgtcgttaa ttttgtcagt tcatccactg aggaaatttg
    19741 cttgtggaat acagcgcgtt taacaagtaa attgaccaca tcagacagga ggtttaattc
    19801 gttctgataa atcgcgataa cagactcagt tatttcgcgt ttttctttat caagaccaag
    19861 ttgaataaga gacaaatcgc catttttcat aacggcgatt tttaaggcgt tattcagtaa
    19921 tacaactgaa cgagaacagg acatcaaagc acctccccgc gagacaatcc gatattgtga
    19981 aatttttccg actcctgact gagcagctcg actatctcca cgcgggataa ctccgccttt
    20041 gtgatgtggc gaatcatggc atcaagatga gaagaaaagc gcgtcgcagc gtcggcctgt
    20101 gcttcggttc tggcctgttg cagcagtaat gcgtatttac cgcactgatt ttcagaaact
    20161 gtatgcataa ctttctccag gcaaaaagaa gccccgcacg attaagtgcg ttaaaaactc
    20221 tggttaatta cttaatgcag atattgctct ggttttaccg acgtcagaat tgtcggtgca
    20281 tactcaaaca ggctgaataa ttcacgtaat gcacggaata aagcatcacg ccagtaacat
    20341 gactcttcat taattcgcca gtatggctgg ttgaattctt tttcagtcaa tccggcatgc
    20401 ataaataaag tacgacgctg actgactgtt aaaaaactaa tatatgcata ctcacttgcg
    20461 ccaacctgac ggcgttttga gaatgcccca cgcaattcat caattgcaca taccagtcgt
    20521 tcacgttcga catcattcat ttcttcaaaa cgcatcgttg cgtgacgctg ttttaactgc
    20581 gcatggaagc aaaccgttag ccgttcacgt tccatcatct gattataata atcgcatgtc
    20641 tcctgccagc gagggacggc cagatgctta ccaattatcc ggcgcatagc tgctggctgt
    20701 ttttcaacaa gattgagcgt catcactgtc atttccagac cctccgactt ttcagaaagg
    20761 tcagagcctt ctttaacgga ctctgttttt tggtgcggat aatgattccc ttgcgtccct
    20821 taccgtgggt aatggtgaag tcaatcgccc tggggctttc gttacgcagt aactgagcaa
    20881 tacaacgagg ctcattcata cggttctcct taacgtggtt caccgagacc taaccacatc
    20941 aaccagccgt cacgaatctc tttagggcgg ctttcataag ccagttttag tccgttattc
    21001 catgccggaa ggtataccca atattcacct gcacgacctg aagctgattg tggatcggtc
    21061 atatcaatta caggcagctt tcctttatcg atcatccgac gaaccgctcc tgtcgatttt
    21121 cctattagtt ttgcgaactc ctgataagga atcgcatcag tcatgagtgt tacttgcttg
    21181 ctcatgtcgt cctccagccc tcatgaatta cgtttaatgc cttataatgc cttttagtgc
    21241 ccacatccaa gcactaaaca atctacatct aaactagata ctattgagat ctaaacacta
    21301 tgtcaaacac gataagcgag aagatagtct taatgcgaaa atctgagtat ttgagcagac
    21361 aacaacttgc tgatttaaca ggggttccgt atggcacgct gagttactat gaaagtggtc
    21421 gttcaacacc tccaacagat gtcatgatga acatcctgca gaccccacaa ttcaccaaat
    21481 acactttatg gttcatgaca aatcagatcg ctcctgagtc cgggcaaatt gcgcccgctc
    21541 tcgcacactt tgggcaaaac gaaacaacgt cgccccactc cggtcaaaag actggttaac
    21601 aatttatcgt gaatatattc atcacaagtg cctactattg gtggctaaat ttcagccacc
    21661 acgaaaaaag cgattagtag tagcaaaaaa aagtaccact cggagggttt tctgatggca
    21721 atcaaaaaac tcgatgatgg tcgatatgaa gtggacatcc gccctactgg acgtaacgga
    21781 aaacgcatcc gtaggaagtt tgataagaaa agcgaagctg tcgctttcga aaaatacacg
    21841 ttgtacaacc accacaataa agaatggcta tcaaaaccaa cagacaaacg acgtctgtcg
    21901 gaactgacac agatctggtg ggatttaaag ggtaaacacg aagagcatgg gaaatctaat
    21961 cttggaaaaa ttgaaatctt cacaaaaata acgaatgacc catgcgcatt tcaaatcacg
    22021 aaatccctta tcagccagta ctgcgccacc cgaagaagtc agggtattaa accttcgagt
    22081 atcaatcgtg atttaacatg tattagcggc atgtttacag ccctgattga agcggagtta
    22141 ttctttggtg agcaccctat cagagggaca aagaggctta aggaggaaaa accagaaaca
    22201 ggctatctca cacaggaaga aattgcctta ctgcttgcag cacttgacgg cgacaataaa
    22261 aagattgcga ttctttgcct gagtacagga gcacgttggg gagaagcagc tcgtttgaaa
    22321 gcagaaaata tcatccataa ccgcgtcacg tttgttaaaa cgaaaacaaa caaaccacgc
    22381 accgtcccga tctcagaggc tgttgccaaa atgatcgcgg ataacaaacg aggtttttta
    22441 ttccctgatg ctgattaccc tcgcttcaga cgaacaatga aagcaataaa accggatttg
    22501 ccaacggggc aagccacaca tgcactaagg cacagctttg ccactcattt catgattaat
    22561 ggaggaagta ttatcacgct acaacggata ctaggtcaca cgcggattga gcaaactatg
    22621 gtttacgctc attttgcgcc agagtacctt caggacgcca tttctcttaa tccgctaaga
    22681 ggtggtactg aggccgagag tgtccacaca gtgtccacag tagagtaacg tttaagggct
    22741 ttcagtggta atttatgccg ctcaaacccg cattgtaccg ttgaaagccc ctactggtga
    22801 caccctaaat ctcccttaca cgggcttatt tttttatgca taagccctat ctctggtaac
    22861 cgtcttccat tgaccacatc gatagaatcc tccttcatag cacgatgcct ttcacttatc
    22921 ggcatcgtgc tcccacaggt tccggctacg cacagccaga acgcgcatag ttgacgctta
    22981 ccaaaaaata ttctcactct ccacatttga atgtcagacg agcgacacca tgtaatccta
    23041 caccttctgt cttcagctca actatttgca tttttttgcc ctgagtaaca cagaaatgag
    23101 ttgcatcatt ttttactata ttttctgcac cagatattct acccctggct aaagaagctt
    23161 cggcttcggt gtagtattgg ttatcgagtt tacgctgaat attactttta tatgcaagac
    23221 caaatttacc gatacttgtc tcatcattat gcacagcaca accagatata agaaaaacac
    23281 tagttaatga tatagcagct atctttttca tctcaccttc ccccattaaa taccaacgac
    23341 actctctagt gtttaaatat aataatggca tgattattat aattgaatag gattataata
    23401 aatgttctgt acaacatttc ctacataagt aggaattacg gacattgagg cccttcaggg
    23461 taactccatg ggggctttaa tatattatat tgaagatgcc actgtttagt tgaatattag
    23521 gtatatgctc ttttttgaaa tttatcggtg gttaccgtta atattcgctg ttcccattgc
    23581 aagctcctgg tggtaaccac tgaatcctcc atacttgaac tgacttttta tcctccgact
    23641 ttcatcctgt tctgactcca ccttttcttt tctgctctac actatctaca gaccaatcat
    23701 aaaggcacat acgatcatgg cagaatttcc cgccagctta ctgattctta atggcaaaag
    23761 tactgacaat ctacccttgc gcgaagcaat tatgctgttg cgtgaggaag gaatgacgat
    23821 ccatgtgcgg gtcacctggg agaaaggtga tgccgcacga tttgtagagg aggcccggaa
    23881 gttgggcgtc gcaacggtga ttgccggtgg tggcgatggc accattaatg aagtttctac
    23941 ggcgttgatt cagtgtgagg gggatgacat acccgcgctg ggaattttgc cattaggaac
    24001 cgccaatgat tttgccacca gtgtagggat tcctgaggca ctggataagg cgctgaaact
    24061 ggcaattgcc ggtaatgcca ttgcgataga tatggcgcag gtcaacaaac aaacctgttt
    24121 tattaatatg gcgacaggcg ggtttgggac gcgtattacc acagaaacgc cggaaaaatt
    24181 aaaagccgcg ctgggtggcg tctcatacat cattcatggc ttaatgcgta tggatactct
    24241 gcaaccggac cgttgtgaaa tccgcggtga aaactttcac tggcaaggtg acgccctggt
    24301 cattggtatt ggtaacgggc gtcaggccgg tggcggtcaa caattgtgcc cgaacgcgtt
    24361 aattaacgat ggcttgctgc aactgcgcat ttttaccggc gatgaaattc ttccggctct
    24421 cgtatcaact ttaaaatctg acgaagataa cccgaatatt atcgaaggcg cttcgtcgtg
    24481 gtttgatata caagctccac acgaaatcac ttttaatctt gatggcgaac cgttgagtgg
    24541 acaaaacttt catattgaaa tacttccggc ggcgttgcgt tgtcgattac caccagattg
    24601 tccattattg cgttaatcaa actattctct cttgaaccag ggagaatccg taatgccgga
    24661 tgaggtgtaa ataccttatc cggcatacag aacaatacta caccgtaatt aattttaccc
    24721 gtgtcttctg caatgccagt ttatccacct ctgatacagc atcatcggta ataataatgt
    24781 caattttttc gattggcagt acctgattaa aaccgcgacg gttaaatttc gatgaatcga
    24841 gaacggcaat cactttatta gcggcggtga ccatcgcacc gctaatcgaa taaccttcat
    24901 taaaggtcgt aataccatta accgcatcaa taccatcagc accgacaaac attaaatcgg
    24961 cattaatatc ctgcaatgaa cgctcggcaa tggaaccatg catcgagcgc gttttatggc
    25021 ggaccgtgcc accacagacg accagagtaa tgtctttatt ttcggaaagg gcaaacgctg
    25081 ccgggagact gttggtaatc accgtgatat ttttagcggt cattaatcct tcggcgataa
    25141 gcattgtggt acttccgctg tcgagaataa cggtcatccc ttcatggatc attttgactg
    25201 ccgcctgcgc tattctgttt tttggcgcgc tggcgagctg aaatcgctct ttaaacccga
    25261 cttcctgggt ctcggtttca ctattaccgg acattatttt cgccgcaccg ccatgaaagc
    25321 gcgtaaccac gcctttttgt tcgagaaagc gcaaatcggc acggattgtc gcttccgagg
    25381 cagcaaatac tcccgccaga tcctgaacaa gcacggttcc ctgttcattc actaattgga
    25441 tgatcttatt ccttcgctcg aatgaattca tcgtcattta cccatattca attgtggcta
    25501 gtgtaaacga agggggacca ttggtgaatg atctgttttg cacaataccg ggccagcatc
    25561 acgctggccc gcggtttcat ggaatgagca acactttgcc cggcatggca ttacgagcga
    25621 tgtcacgcac cgcctgggtg aagctttcaa agcttccacg gtgagcgatt aatggctcca
    25681 ggcttaactt acgttctgtc agcaaccggc tcgccgtttc ccactcctgc cccggccaag
    25741 ggctggaata gttcatccaa ctgccgataa ccgtcagctc tttacgcaat attttgccaa
    25801 acgttgccga tgttaaatgc agatcctgat gcaacgtgcc caccagcgcc agttgggcat
    25861 gaggaccggc aatctctacc gccagttcga cagtttgcgg tacgccagcc gtctcgagga
    25921 taagctgatt aaaacgcagt tcgcgtaaaa cgctctgcat ttgcggcgcg ctcatttcgc
    25981 tactgttaaa tgtttgcatc gcaccgaaaa attttgccag tgccagtttt tctgagctaa
    26041 tgtcgatagc cgtcacactc tttgctccca gcgcgacagc gcactgaata gccagcaggc
    26101 caatggttcc ggcaccaata ataataacgt ttttattctc acaaccttgc gctaaatgaa
    26161 aagcatgcag accaacggta atcggctcaa taaaagcccc atcctcaata ggcatatccg
    26221 tgggtagagc aaagacattt tttcgcttaa cgacaatata ttcagcaaat ccaccatcac
    26281 gccgcgagcc aataaaatca tattttgcgc actgggaata aaaccctttc agacactctg
    26341 gacaagtaaa acagggtaat aacggcacac aggcaaccgc atcgccaggg tgtaaatcat
    26401 caacaccgga tcccaccgca tcaatatagc cgctaaattc atggcctaac gttattggat
    26461 aataatgtgc accattttta aatatcctgg gtaaatcgga accacataag cccgagctgg
    26521 caatttttac ccgcacctca tcctgatgtt taatttcagg aatgacgctt tctgcaacgc
    26581 gcacgatacc atcagtatca ttcaccactg atttcataaa aactcctgat tgttaagggg
    26641 gataacctcc ccctcaggta aaaattattc tgcgagaacg actttctctt gtttaataaa
    26701 gccacgcgct ctacgccagg tcatgaaaat accggtcaga taaattgcac cgataataat
    26761 gaaaccggga atattttgcg gggagaaaac ctgaatcagt aaccaggtaa tgggagaacc
    26821 gccctgatcc attgaagtca ccataccccc ggcttttaac gccccagcat tagccgccag
    26881 ttgggtgtgc aaaccaatag tttgcgtcgc gatccacaga gtgatgctca tgatgatgac
    26941 acccgagatt aaggtgcgga acagatttcc acgatgcacg gcgactgcca tcgccacaaa
    27001 gaagccgatg gtggcaagat cgccaaacgg cagcacctga ttacccggaa cacaaacagc
    27061 aattaaaatg gtgagcggga taaaaatcag gcttgccgat accaccgccg tatgccccag
    27121 cagtaatgcg ggatccaggc caatcaggaa ctcctgaccg ccgaacttcg cctgtaaacg
    27181 actacgggcc tgcttagcga tgggcgttaa accatccatg atgggtttaa tcacccgtgg
    27241 cattagcagc atcactgccg ccgtttttac cgccagctgc aatacacctt tgacatcgta
    27301 acccgcgagg atgccgataa tcagccccat cacaaaaccc acggtgacag gctcgccaaa
    27361 tggaccaaat ttgcgctgaa tatcgtcggc gctaaattta attcggttaa cgcctgggat
    27421 tttctcgatg atagcatcga ccagcaccgc aatcggcccc atatacgccg acgtaccgtg
    27481 cggaatagca ataccttcca gctcaaagaa atttcgggta tcgcgggcaa accagtcgcc
    27541 gagcttataa acaaacgccg cgtgaattac cacacctgcc atccctatca tccatgaacc
    27601 ggttgccaga tgcagcaacg cgccggtgaa ggtcatatgc cagatattcc agatatcaat
    27661 atttaccacc cgcgtcatac gggtcagtaa catcgccacg ttaaccagaa tcgcaatcgg
    27721 aatcgccacc agcgcaattt gcgacgccca ggtcattggt gaagagcccg gccagccgac
    27781 atcgaccaca tgcagattca ggtcgaaatt ttccgccatc gctctcgccg ccggaccaat
    27841 ggaatccagc attaagccaa tcacaaggcc aatgccaaca aagccaatcc cgatatgcag
    27901 acccgcttta aagcaatcgc ctgccttcat gcctaatatt ttagaaaaaa taatgatgac
    27961 aatcggaagc atcaccgtag ggccgaggtc gagaatataa cgcatgactt ctgaaaacat
    28021 aggtcacccc tgtaagatag tcagaatttt attttgtaat gcttcgatac cgataccaga
    28081 aataaaaggc atgccgtgaa ctaacggaat atcgccaaaa ctacgatcca ctttggcagt
    28141 ggtgcatatc aaatgcacac catccatata ggtttctatt tcattaaccc gacactggat
    28201 taattcaaca ggaatattat gattctgaca caactcttta atttcttccg ccgccatcgt
    28261 agaggtcgca accgcgcctc cgcaagcgac aataatcttg cgtttcataa atagtccttt
    28321 ttattgttac agagggattt attcgtctga atctaaaaca tactttgtga agtattcctt
    28381 taactgggtt tcaggaagag tgattagtgt ctcgacgata tcgggctgtt gtaacttgcc
    28441 aaataaacag cgtaaaagtt tcaattgctg ctgcggattt tccacaatca acgcaataac
    28501 caacgatacc tccacgtcgt tatcatcatc cgcttgctga aaatgaactt tatttgttgg
    28561 ccttaacaga taaatggctg acgacttagc atgaatcgcc tcacaatgcg gtattgcaat
    28621 ggcgtgctgc tcaagcatta tcccggtagg gaattctgct tctctgacaa ttaatgcctg
    28681 tggccaggta tcatgaacca cacctttggc gagcatctca ttaccgatat gggttaaaac
    28741 ttcgctacga tcgacaaaag aaattccgct acgaacaaac aggttagtca tataccgtcc
    28801 ttattccgca cagccgtagc gataggcgcg caaaacatca taaattttat ccataatcag
    28861 ctgatgcggt attgctgata attccccgga ctgaatgcgt tcaaattgtt tgggaagata
    28921 ctgactaatc atgcccagtg ggatgtccac gccttcaaga ttcaccatca tcgtttcgac
    28981 gctattttta atccgactat gcggccagta ataacgaata cgatccgaca ggctgtaacg
    29041 aatatccagt aatgaatcgt taaaacccgt acgataatat tttttccagt attgcggttc
    29101 gtcgagcatc acttcttcaa ttaccgccag gcaaccgctg cgattttcgg gggcgataag
    29161 ttcctgctca atttgtgcca gtgcaaatat cgcctcgcgt aaagcaaagg ttaatgcggg
    29221 accgactttc aatattgcaa agtgatcgcg gactaattcc caataagccg ttcgggtctg
    29281 gtaatcggta gaatgtgctt cataaaccat tcgggtgttt tctatccatt gcgccagcgc
    29341 ctgcgcttcc tgcggctgat aatggataat attgctgtga tcaaattcca cacccggctg
    29401 caccacgatg gcaatcacac gtgttaacgc ctctgtcagc ccacgggcaa taaaggcctt
    29461 ttgatgcgta cgtaaagtat tggcggcatc ttcaacatgg gtgatgtgta ctgactgaat
    29521 ggcgctggcc tcaccgcccg gaaccggaac ttcggtgcca atgacatagc tcagttgctc
    29581 acgctggcaa tctgtcgcca cactttccgc agcaaagcaa agcacagcag ctcgttccgc
    29641 aaccgtttct ggtgctaacg gtatgggatc ccccgcgcag gacattgacg catcaagatg
    29701 aattttactg aagccagcac gaacatatgc ttttaccagc tcgacggatt tttccatcgc
    29761 cgcatccgca ttttcttgct gccagcagtt tggccccaga tgatcgccgc cgagaataat
    29821 gcgttcgcgt gcaaacccaa ctttatcggc aatcgtaaaa acaaattcgc gaaagtctgc
    29881 cggtgtcatt ccggtataac cgccaaattg attgacctgg tttgacgttg cttcaatcag
    29941 cactttgcgc gtgctgttgc gatcaaatgc cagcgccgct tcgataacca acggatgggc
    30001 agaacagact gaacatatgc cgatatgttc accagcttta tgccgggcaa ttaacgtttt
    30061 catgtttttt ccttgttaaa tggcaggtgc gttatgccct gccctcgcag ccacaatcgg
    30121 caatcacttt gctcaccaca tcgcgcattg cggatttagc cgactgcaaa taatcccggg
    30181 gatcggtcgc ttcggggtgc tcggtcaggt aattttttaa cgcctgcgag aaggcatttt
    30241 tcagctccgt tgcaacgttg attttgcata tccccagttt gatggtttgc tgaatatcct
    30301 tagtcgataa tcctgacgcg ccatgcagca ccagcggtaa gttcacccac tggcgaatgt
    30361 tctccagtcg agaaaaatca agcgccggtg cgctggcata cataccatga gccgtgccga
    30421 tggcgaccgc cagggaatca attccggttg cctcggcaaa ttcacgcgcc tgagcggggt
    30481 tggtataaaa agcatcggct tcattgactt gcacatcatc ttcctggccg ccaagttgcc
    30541 ccagctccgc ttcgacgctg acatcaaagc gatggcaaaa atccaccacc tctttgaccc
    30601 gtgaaatatt ttgcgcaaaa ggcaaatgcg aggcgtcaat catgactgag cgcacgccag
    30661 aacgaacctt ctgagcgata tcgtcaaatt tcgtgtgatg gtcgagatga attgccagtg
    30721 gatggtgata ttgcttcgcc atcgcgctga ccagcgccaa cagattttct gtaccagcat
    30781 gagtaaatgt gccaggcgtt ccggcgatga tgaccggcgc atgcaggttg gcagcggttt
    30841 ccaccaccac ttgcatcgtt tcgagattgt gaatattgaa tgccggaacc gcataaccgc
    30901 cgcgctgtgc gttgttcagc atctgctttg tcgataccac gtacattttc atatcctgct
    30961 gtttgttttc gatttcaaaa tataatgaaa ttatttgttt ttaaatatcg cgataacgat
    31021 cacaaaaacg acaatatgaa aattgttcga ggagtgaaag gcaaaaaaac ggcctcccga
    31081 tagggaagcc gtagcaaagt gcgcgtgttt ttatgccgga tgcggtgtaa acatacgtgg
    31141 cagtgctatg taggcatgat aagacgcttc agcgtcgcat caggcatagg ttgccggatg
    31201 cagcgtaaac gccttatccg tcctacgggg tggtgttgtt cgtataaggc gtatcaggcg
    31261 atagtaattt tgctatcgag ataaacgtcc tgcacggcgt taatcagttt cacgccgtca
    31321 gccatcgatt tcttgaacgc cttacgtcca agaatcagcc ccattccgcc agcgcgtttg
    31381 ttgataaccg cagtacgcac tgcatcactg aggtcagttt caccgcctgc agcaccgccg
    31441 gagtttatca accctgcccg gcccatatag cagttagcta actgataacg caccagatca
    31501 atcgggtttt cgctggttaa cttgctgtac acgcgatcgt cggtataacc gtaattaatc
    31561 gctttataac cgccgttatt ttccgccatt ttctgtttga cgatgtccgc gccaatggtc
    31621 gccgccagat ggttcgcctg accagtcagg tcggcggaaa catggtaatc aacgccatct
    31681 ttcttaaagg cggagttacg caaataggcc cacagcactg tcaccatgcc cagctcgtgc
    31741 gcacgttcaa aagccgcaga aatttcttca atctggcgac gtgactcttc cgagccaaaa
    31801 tagatagtcg caccaaccgc aaccgcgccc atgttgaacg cctgctccac gctggcatac
    31861 agcgtttgat cgtaggtatt cgggtaactt agcgtctcgt tgtgattaag tttgacgagg
    31921 aatggaatgc gatgcgcata acgccgcgat accgacgcca gcacgccgta agttgacgcc
    31981 acacagttac agcccgcttc gatcgccagt tcaacaatgt ttttcgggtc aaagtagagc
    32041 gggttagcag caaatgaagc tccggcagag tgctcaacgc cctggtcaac cggcagaata
    32101 gaaagatatc ctgtgccagc cagacgcccg gtgttgtaca acgtctgcat attacgtaac
    32161 accgcaggcg ggcgattatt gtcaatcatc acgcggtcta cgtagtcatg tccggggaga
    32221 taaagctggt cagaaggaat agtcatacaa cggtgctgta aaaggttgtc ggcgtctttg
    32281 ccaagcaact gcgcaatatc tgtcattact atgctcccgt aaattccgat tggatatcgg
    32341 ctatggattt tcctggcccg ccttttgcgg gcaatcataa tcctggtcgt tacgggcgag
    32401 tttttccatc ttttggatgt tttttcagcg ttttctgttg gctcgattca tcagaaaaaa
    32461 tgttagcgcg gtcaagtttt caccgcaaag gtatttaaaa ggcattatta agtggtattg
    32521 tcatcgcgta ccttacatta cctgtcatga aggaattaaa agatgaaaac aacagcaaag
    32581 ctgtcgttca tgatgtttgt tgaatggttt atctggggcg cgtggtttgt gccattgtgg
    32641 ttgtggttaa gtaaaagcgg ttttagtgcc ggagaaattg gctggtcgta tgcctgtacc
    32701 gccattgcgg cgatcctgtc gccaattctg gttggctcca tcactgaccg ctttttctcg
    32761 gcgcagaaag tgctggcggt attgatgttc gcaggcgcgc tgctgatgta tttcgctgcg
    32821 caacagacca cttttgccgg gttcttcccg ttactgctgg cctactcgct aacctatatg
    32881 ccgaccattg cgctgactaa cagcatcgct tttgccaacg tgccggatgt tgagcgtgat
    32941 ttcccgcgca ttcgtgtgat gggcactatc ggctggattg cctccggtct ggcatgtggt
    33001 ttcttgccgc aaatactggg gtatgccgat atctcaccga ctaacatccc gctgctgatt
    33061 accgccggaa gttctgctct gctcggtgtg tttgcgtttt tcctgcccga cacgccacca
    33121 aaaagcaccg gcaaaatgga tattaaagtc atgctcggcc tggatgcgct gatcctgctg
    33181 cgcgataaaa acttcctcgt ctttttcttc tgttcattcc tgtttgcgat gccactggcg
    33241 ttctattaca tctttgccaa cggttatctg accgaagttg gcatgaaaaa cgccaccggc
    33301 tggatgacgc tcggccagtt ctctgaaatc ttctttatgc tggcattgcc gtttttcact
    33361 aaacgctttg gtatcaaaaa ggtgttattg cttggtctgg tcaccgctgc gatccgctat
    33421 ggcttcttta tttacggtag tgcggatgaa tatttcacct acgcgttact gttcctcggt
    33481 attttgcttc acggcgtaag ttacgatttt tactacgtta ccgcttacat ctatgtcgat
    33541 aaaaaagccc ccgtgcatat gcgtaccgct gcgcaggggc tgatcacgct ctgctgccag
    33601 ggcttcggca gtttgctcgg ctatcgtctt ggcggtgtga tgatggaaaa gatgttcgct
    33661 tatcaggaac cggtaaacgg actgactttc aactggtccg ggatgtggac tttcggcgcg
    33721 gtgatgattg ccattatcgc cgtgctgttc atgatttttt tccgcgaatc cgacaacgaa
    33781 attacggcta tcaaggtcga tgatcgcgat attgcgttga cacaagggga agttaaatga
    33841 aaacagaacg tattctcggt gctctttatg ggcaggcgtt aggggatgcg atggggatgc
    33901 cctccgagct ttggccacgc agccgcgtta aagcacactt tggctggatt gaccgttttc
    33961 ttcctggacc aaaggagaat aacgcggcct gttattttaa ccgcgccgaa ttcaccgacg
    34021 atacctcgat ggcgctgtgt ctggcggatg cgttactgga acgtgaaggc aagatcgatc
    34081 cgaatcttat tgggcgtaat attctcgact gggcgctgcg tttcgacgcc tttaacaaaa
    34141 acgtactagg tccgacctcg aagattgctc tcaacgccat tcgcgacggt aaacccgttg
    34201 ctgaactgga aaacaatggc gtgaccaacg gcgcggcaat gcgcgtctcg ccattaggtt
    34261 gtttgcttcc ggcgcgtgat gttgattcct ttattgatga tgtggcgctg gcgtccagcc
    34321 cgacccataa atccgatctg gcggttgcgg gcgcggtagt catcgcatgg gcgatttctc
    34381 gtgccattga cggagaaagc tggtcagcga ttgtagattc actgccttca attgcgcgac
    34441 atgcccagca aaaacgcatc accaccttca gcgcctcact ggcagcacgt ctggagattg
    34501 cgctgaaaat tgtgcgcaat gccgacggca ctgaatccgc cagcgaacag ctgtatcagg
    34561 tcgttggcgc aggtaccagc actatcgagt ccgttccgtg cgccattgcg ctggttgaac
    34621 tggcacaaac cgacccgaac cgttgcgccg tcctctgcgc taaccttggc ggcgatacag
    34681 acaccatcgg tgctatggcg acggcaatct gcggcgcgtt gcatggcatt aacgctatcg
    34741 atcctccgtt aaaggcggag ctggatgcgg taaatcagct tgatttcaac cgctatgcca
    34801 cagcgctggc gaaatatcgt caacaacggg aggcggtatg agcggcgctc gattacacac
    34861 gctgctgcct gaattaacca cgcgtcagtc ggtgatggtc gtcggcgcgg cggtcattga
    34921 cgtgatcgcc gacgcttatg tcctcccctg gcgtgggtgc gatatcgaac tgaaacagca
    34981 gagcgttaac gttggcggct gcgcactgaa tattgccgtg gcgttaaagc gcctcggcat
    35041 cgaagcgggt aatgccttgc cgctcggtca gggggtatgg gcggagatta ttcgcaaccg
    35101 gatggcgaaa gaggggttaa tcagcctgat cgataacgcc gaaggcgata acggctggtg
    35161 tctggcgctg gttgagccgg atggcgaacg tacttttatg tcattcagcg gtgtggaaaa
    35221 tcagtggaat cgccagtggc tggcgcgatt aaccgttgcg cctggcagcc tgctctattt
    35281 ttccggttat caactggcct cgccctgcgg cgaattgtta gtggaatggc tggaagagct
    35341 gcaagacgtg acgccgttta tcgattttgg cccacgtatt ggcgatatcc cggacgcatt
    35401 actggcgcgg atcatggcct gtcgaccttt agtgtcactc aatcgtcaag aggctgagat
    35461 tgccgccgaa cgttttgctt tatccgcaga gataacaaca cttggcaagc aatggcagga
    35521 gaaatttgcc gcgccgttga tcgttcgtct cgataaagaa ggcgcatggt atttcagcaa
    35581 cgacgcttct ggctgcattc cggcatttcc aacgcaagtt gtcgacacca ttggggcggg
    35641 cgacagtcat gccgggctgg cctctggtct gccactggcg gatgccgtat tactgggcaa
    35701 tgcagtggcg tcgtgggttg tcgggcatcg gggcggtgat tgtgcgccaa cgcgcgagga
    35761 actactcctc gcacacaaaa acgtatagat cgctgcgaca gtggctaatg ctgtactcaa
    35821 taggccgttg ctgttggtca agcgccactt gcttgatcac cagcaccggt attttgctat
    35881 ctaactgaat atgtgactga aactcggcat ccggcatccg ggcgctaacg cgggaacgcg
    35941 tacgttgtgg gtaaatgtgc tggctgcgga aatagtcata aagtgaaatc ccgatggcat
    36001 caacatcatg aattaaatgc gccggaaccc acgattcctc aatcgatacc gcttcttcat
    36061 cgacatagcg aatacgctta agcaaaaaga catcacttcc tgcttcgacc gccagctgct
    36121 gcgcgacttc ttcgggacat ttcacgacac gcttgttaac ccatagcgta tcgggctttt
    36181 tcccgcgcaa taccacctgc tgagaaaaac ctcgcgcttc tttcaacgag tattcgaaga
    36241 tgttgttgat ctgcgtgccg taaccacgcg aacgcgtcac cacaccctct tcttccagcg
    36301 cctgcatcgc cttgcgcacc gtaatgcgcg aaacgccggt taactgactt aaatcacgct
    36361 caccgggcaa aatattgcca tgctccagca ccccgctgcg cacggcattt tttaccgttt
    36421 cggcaaactt aatataaagc ggcgtgttat ccgccgctaa aatacgttcg ttcagttggg
    36481 caatcagctg ggtatgcgct tgttccattt gtctttttcc tgccagggag tctggtggga
    36541 gtatatcact gcttcttatt taaggcgttt ctttaatccc atcaacgaac ccctgcaact
    36601 cctccaccgt gccattaaac acattaaaat ccaccggacc attgatgcca tctacctgtc
    36661 cacggtcgga atgctgccag aagcgccagg ccatgccgtc attgtccgga cgacgttgat
    36721 agtagtgagc cacccaccac ggatattcat tgaaatagcc cgccagattc gtgtgataaa
    36781 aaacggctcc tgagtaaata atcggctttt tccccgtact tttttcgacc atttttagcc
    36841 actgacttac cctcttgcgt aattcttttg ccgataattt tcctcgctct tctacgtcca
    36901 gtaccgcagg gaaatcgcct tgtgagaaat ctaccgtttg cagaaataat cgcacctgaa
    36961 ccggtgctgc taccgacggg gagaaataat gatatgcccc gcgcagcagg ccattttcac
    37021 ggcttagttg ccagttacgc gaaaaatagg ggtccaccag cttttcgcct tccgtcgcct
    37081 taataaaggc aaattgtaag cgaataccgt tatcgcgcat ttttgccaca cgctgccagt
    37141 cgatccgctc ctgccagcgc gaaacatcta ttccgtgaat ggtgtaactg gcaggaatac
    37201 gaatagcgaa agatttaacc gggcgataac cgtagaagtg gatgtagtct gtaatctgaa
    37261 ctgctgtcga atagaaaaaa ttcaccgtct gacgcggata aattgcaacg atggaaatta
    37321 gcccaagagc gcataataga gcggtgagtt tttttcgact ggtaattctt agctgcattg
    37381 gtttcatccc tgaatgtcag tgccaaaggc tgacaataac caaagcagct atagtacggt
    37441 gctcaccacc aggcgtggaa gtggtgaacc ggaccaatac cgtgaccaac ttccagcgtg
    37501 tcggcctggg ctaacgccga tgaaagccag ctttttgcct cctgtacggt gtcagcccag
    37561 tttgtatggc gcgggcgtag tgcagccaac gccgcagaga gtgtacaacc agtaccgtgg
    37621 gtgtttttgg tcataatgcg cggtgcggta aaccgttgtt caccctcgcg ggtaaacagc
    37681 cagtccgggc tttgctcatc atccagatga ccacctttca ttagcactgc gccacagccc
    37741 atcgccaaca gcgatcgccc ttgttccagc atttcctgtt cggtgcgcgc gtgtggcgcg
    37801 tcgagcaagg cggcagcttc gggcaagttt ggcgttatta atgaaacctg tggcaataat
    37861 cgactgcgca gcgtagcaac cgccgaaggt gaaagcagcg ggtcgccgct ttttgccagc
    37921 ataacggtgt cgagtaccac gttttggatc tgataacgtt gcaaccgttc tgccaccgct
    37981 tcaacaatat cggtttccgc caacataccg attttagtgg tgtcgattcg cacatcgctg
    38041 aacaccgaat cgagctgggc ggcgacaaaa tcaggctcaa tgcgatacac cgactgtacg
    38101 ccacgggtat tttgcgccac cagtgcagta ataactgagc aaccataagc gccaagtgcc
    38161 gagaaggttt taagatcggc ctgaatcccc gcaccaccac tgggatcagt accggcaatc
    38221 gtcagagcgt taattcgttt catgcctgca cctcctgcgt caattgccag agcgcatcaa
    38281 ggaaatgtgg aacaaaactg cctggcccct cgcttctggc gactgcgcgc tctccggctt
    38341 gtttcatcca gtgacaggca gatgcgacat tttccagcat atcgcctggt aacgcacaac
    38401 aggcagcaac aaccgccgat aatgcacagc cagttcctac cactttagtc attagcggat
    38461 cgccaccgtg aatgccaacg atacgatgcc catcggtaac ataatccacc tcgcctgtga
    38521 ccacgacgat tgcgccagtt tcccgtgcca gtgtttgtgc agcgggtatt gcgttagctg
    38581 cggcgtcagt ggtatccact ccccgtccac cattagcaac gccagctaat gccatgattt
    38641 ccgaagcatt accacgtatg gcggttggct tatgagacag aagttccaga caaaaacggc
    38701 ggcgataatc gagtgcaccc accgctacag gatcaagcgt ccagggggtt tgagagcttt
    38761 ttgcttgctc aacggcggca cgcatcgcct gtgcgcgtgg ctgcgtcagc gtgccaacgt
    38821 taatcagcaa cgcactagca atagccgcaa actgactggc ctcttcggtt tcgataacca
    38881 tcgctggcga tgcaccgagc gccagcaagg tattggcagt aaaggtttgc accacatcgt
    38941 tggtcatgca gtgcacaaga ggggaatgtt ggtgaaaaag gtgtaacgtg tgcgcagatt
    39001 gcgcggaact cagcaggtcg acttgcatag tttgctcctg ccataacgtg aagaagcaat
    39061 gacctggtgg tccgtgactt ccctacgctg gcattatcca gatcaggtaa tacgggtatt
    39121 tctcagcctt cacgcagaag ggcaccccga gtcgtttggt tgcgatgata aatcgcagag
    39181 gaggatggta atgtccagcg cacgcgttgt aaacgaggaa aaacggcagt tttacaatcg
    39241 cgttaataaa ttatttgata tatgaatcca gcaccttcag aacgacatcc agatcttctt
    39301 cacgttttag ctcatccccc tggtgaacga tgtgttccgt cagatgacct ttaatcactt
    39361 cccgcatcag accgtttacc gcgccacgga tagcagcaat ctgttgtaaa actgcagcgc
    39421 attcgtgcgg ctcgtcgagc attttcttga gcgccacgac ctggccctga atcttactgg
    39481 cacgcgcttt cagtttctgt ttatcacgga ttgtatgaga catggcaaca cctggttaac
    39541 aagaatatga aaaatcatag cactattaat ctactggggg gtagtatcag gtactggggg
    39601 ggagtagaat cagattgccg aattaatact aagaattatt atcatgaccg aatttacaac
    39661 tcttcttcag caaggaaacg cctggttctt catccccagc gccatcttac ttggtgcgct
    39721 tcatggtctg gaaccagggc actcaaaaac gatgatggcg gcgtttatca tcgccatcaa
    39781 aggcaccatt aaacaggcgg tgatgctcgg actggcagca accatttcgc agaccgcggt
    39841 ggtctggttg attgcctttg gcgggatggt gatcagt
//
LOCUS       DAJVUN010000008        39371 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.008, whole genome shotgun sequence.
ACCESSION   DAJVUN010000008 DAJVUN010000000
VERSION     DAJVUN010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.008"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..1609)
                     /locus_tag="OQQ76_000347"
                     /pseudo
     CDS             complement(1..1609)
                     /locus_tag="OQQ76_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308529.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SmdA family multidrug ABC transporter
                     permease/ATP-binding protein"
     gene            complement(1639..2097)
                     /gene="decR"
                     /locus_tag="OQQ76_000348"
     CDS             complement(1639..2097)
                     /gene="decR"
                     /locus_tag="OQQ76_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DecR"
                     /protein_id="HCS1966958.1"
                     /translation="MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLED
                     DGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE
                     YDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE"
     gene            complement(2250..3068)
                     /gene="cof"
                     /locus_tag="OQQ76_000349"
     CDS             complement(2250..3068)
                     /gene="cof"
                     /locus_tag="OQQ76_000349"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HMP-PP phosphatase"
                     /protein_id="HCS1966959.1"
                     /translation="MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGR
                     HALEMQHILGALSLDAYLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDTRASM
                     HIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQI
                     QLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDRE
                     MLGSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTHWLDYPHLPYSPE"
     gene            3168..4868
                     /locus_tag="OQQ76_000350"
     CDS             3168..4868
                     /locus_tag="OQQ76_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HCS1966960.1"
                     /translation="MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLL
                     RQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPG
                     ELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDN
                     NTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQ
                     LFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTA
                     ELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQV
                     SSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWT
                     IPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTT
                     LLAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQVMPDEE
                     NRFNALKAVFSQLMADATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ
                     "
     gene            4933..5628
                     /gene="queC"
                     /locus_tag="OQQ76_000351"
     CDS             4933..5628
                     /gene="queC"
                     /locus_tag="OQQ76_000351"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HCS1966961.1"
                     /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID
                     VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL
                     FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVCLGMAKDIRFETPL
                     MWIDKAETWALADYYGKLDLVRNETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKP
                     TVMAAMKQKTGLR"
     gene            complement(5680..6078)
                     /gene="fadM"
                     /locus_tag="OQQ76_000352"
     CDS             complement(5680..6078)
                     /gene="fadM"
                     /locus_tag="OQQ76_000352"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain acyl-CoA thioesterase FadM"
                     /protein_id="HCS1966962.1"
                     /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM
                     TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADA
                     LITFVCIDLKTQKALALEGELREKLEQMVK"
     gene            complement(6172..6543)
                     /locus_tag="OQQ76_000353"
     CDS             complement(6172..6543)
                     /locus_tag="OQQ76_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HCS1966963.1"
                     /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA
                     QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED
                     LKQVPGMGNSLVERNLAVLTL"
     gene            complement(6694..8565)
                     /gene="ppiD"
                     /locus_tag="OQQ76_000354"
     CDS             complement(6694..8565)
                     /gene="ppiD"
                     /locus_tag="OQQ76_000354"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1966964.1"
                     /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK
                     VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD
                     QYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQL
                     TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY
                     EQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQQQRTRYSIIQT
                     KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE
                     KGQLSGVIKSSVGFLIVRLDDIHPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS
                     DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPG
                     INSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV
                     DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN
                     VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ"
     gene            complement(8757..9029)
                     /gene="hupB"
                     /locus_tag="OQQ76_000355"
     CDS             complement(8757..9029)
                     /gene="hupB"
                     /locus_tag="OQQ76_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-beta"
                     /protein_id="HCS1966965.1"
                     /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL
                     VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN"
     gene            complement(9238..11592)
                     /gene="lon"
                     /locus_tag="OQQ76_000356"
     CDS             complement(9238..11592)
                     /gene="lon"
                     /locus_tag="OQQ76_000356"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HCS1966966.1"
                     /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM
                     DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA
                     LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID
                     DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK
                     KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ
                     KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI
                     LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR
                     GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV
                     AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP
                     KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK
                     HIEINGDNLHDYLGVQRFDYGRADNENCVGQVTGLAWTEVGGDLLTIETACVPGKGKL
                     TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI
                     AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN
                     KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK"
     gene            complement(11780..13054)
                     /gene="clpX"
                     /locus_tag="OQQ76_000357"
     CDS             complement(11780..13054)
                     /gene="clpX"
                     /locus_tag="OQQ76_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HCS1966967.1"
                     /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC
                     NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG
                     DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA
                     KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT
                     KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED
                     VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE"
     gene            complement(13180..13803)
                     /gene="clpP"
                     /locus_tag="OQQ76_000358"
     CDS             complement(13180..13803)
                     /gene="clpP"
                     /locus_tag="OQQ76_000358"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006809880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HCS1966968.1"
                     /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF
                     LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS
                     TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
                     GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN"
     gene            complement(14049..15347)
                     /gene="tig"
                     /locus_tag="OQQ76_000359"
     CDS             complement(14049..15347)
                     /gene="tig"
                     /locus_tag="OQQ76_000359"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HCS1966969.1"
                     /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF
                     RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED
                     FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEA
                     EDRVTIDFTGSVDSEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP
                     EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER
                     ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR
                     ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK
                     ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA"
     gene            complement(15691..16008)
                     /gene="bolA"
                     /locus_tag="OQQ76_000360"
     CDS             complement(15691..16008)
                     /gene="bolA"
                     /locus_tag="OQQ76_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BolA"
                     /protein_id="HCS1966970.1"
                     /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLV
                     SDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAG
                     SIA"
     gene            16313..16891
                     /locus_tag="OQQ76_000361"
     CDS             16313..16891
                     /locus_tag="OQQ76_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1966971.1"
                     /translation="MFKKILFPLVALFMLAGCAKPPTTIEISPTITLPQQDPSLMGVT
                     VSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVN
                     LQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKITKNYRASYNVEGAFQASNK
                     NIADAVNSVLTDTIADMSQDTSIHEFIKQNAR"
     gene            16935..18410
                     /gene="ampG"
                     /locus_tag="OQQ76_000362"
     CDS             16935..18410
                     /gene="ampG"
                     /locus_tag="OQQ76_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide MFS transporter AmpG"
                     /protein_id="HCS1966972.1"
                     /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI
                     DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE
                     PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG
                     GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF
                     FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA
                     LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT
                     SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA
                     VPGLILLLVCRQTLEYTRVNDNFISRTEYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA
                     LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT"
     gene            18871..19818
                     /gene="cyoA"
                     /locus_tag="OQQ76_000363"
     CDS             18871..19818
                     /gene="cyoA"
                     /locus_tag="OQQ76_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit II"
                     /protein_id="HCS1966973.1"
                     /translation="MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLI
                     LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF
                     LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
                     VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM
                     KFKAIATPDRAEFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFAD
                     VINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH"
     gene            19840..21832
                     /gene="cyoB"
                     /locus_tag="OQQ76_000364"
                     /pseudo
     CDS             19840..21832
                     /gene="cyoB"
                     /locus_tag="OQQ76_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002444673.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
     gene            21822..22436
                     /locus_tag="OQQ76_000365"
     CDS             21822..22436
                     /locus_tag="OQQ76_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HCS1966974.1"
                     /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF
                     ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL
                     ALTCLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
                     MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM"
     gene            22436..22765
                     /locus_tag="OQQ76_000366"
     CDS             22436..22765
                     /locus_tag="OQQ76_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HCS1966975.1"
                     /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA
                     VILGTIRAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL
                     NYNMMMH"
     gene            22777..23667
                     /gene="cyoE"
                     /locus_tag="OQQ76_000367"
     CDS             22777..23667
                     /gene="cyoE"
                     /locus_tag="OQQ76_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HCS1966976.1"
                     /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV
                     GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYVTLLGIAGFMLLW
                     FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDS
                     GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV
                     ATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALS
                     VMMSVDFMVPDSHTLLAAVW"
     gene            23816..25180
                     /locus_tag="OQQ76_000368"
     CDS             23816..25180
                     /locus_tag="OQQ76_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308508.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1966977.1"
                     /translation="MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
                     ASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIW
                     GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITH
                     KLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLN
                     FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRK
                     MKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAG
                     YKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPA
                     YVSSLRIEIPANIAANEALKVRLLETEGIKEVLIAEEEHSAYVKIDSKVTNRFDVEQA
                     IRQA"
     gene            complement(25308..25799)
                     /gene="yajQ"
                     /locus_tag="OQQ76_000369"
     CDS             complement(25308..25799)
                     /gene="yajQ"
                     /locus_tag="OQQ76_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414960.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide binding protein YajQ"
                     /protein_id="HCS1966978.1"
                     /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDA
                     SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI
                     ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN
                     FRD"
     gene            25967..26878
                     /gene="panE"
                     /locus_tag="OQQ76_000370"
     CDS             25967..26878
                     /gene="panE"
                     /locus_tag="OQQ76_000370"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HCS1966979.1"
                     /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET
                     DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT
                     IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL
                     PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE
                     GHHTSAEDLRHYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP
                     ENTRLFEMVKRKESEYERIGTGLPRPW"
     gene            26841..27431
                     /gene="yajL"
                     /locus_tag="OQQ76_000371"
     CDS             26841..27431
                     /gene="yajL"
                     /locus_tag="OQQ76_000371"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase YajL"
                     /protein_id="HCS1966980.1"
                     /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLA
                     ITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIV
                     AAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVKLLTSQGPGT
                     AIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE"
     gene            complement(27485..28933)
                     /gene="thiI"
                     /locus_tag="OQQ76_000372"
     CDS             complement(27485..28933)
                     /gene="thiI"
                     /locus_tag="OQQ76_000372"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HCS1966981.1"
                     /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
                     RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQL
                     EGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPEVTVHLEVEDDRLL
                     LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI
                     GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVA
                     ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
                     DFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSIIDKVVEEANNVDIREIAQQTE
                     QEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNR
                     TWLLWCERGVMSRLQALYLREQGFNNVKVYRP"
     gene            29139..29381
                     /gene="xseB"
                     /locus_tag="OQQ76_000373"
     CDS             29139..29381
                     /gene="xseB"
                     /locus_tag="OQQ76_000373"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HCS1966982.1"
                     /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ
                     LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE"
     gene            29381..30280
                     /gene="ispA"
                     /locus_tag="OQQ76_000374"
     CDS             29381..30280
                     /gene="ispA"
                     /locus_tag="OQQ76_000374"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HCS1966983.1"
                     /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG
                     KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
                     VKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL
                     DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA
                     FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ
                     LAEQSLDTSALEALADYIIQRNK"
     gene            30305..32167
                     /gene="dxs"
                     /locus_tag="OQQ76_000375"
     CDS             30305..32167
                     /gene="dxs"
                     /locus_tag="OQQ76_000375"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HCS1966984.1"
                     /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
                     RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
                     GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA
                     FEAMNHAGDIRPDMLVVLNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG
                     VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ
                     FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA
                     KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY
                     STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT
                     PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLAI
                     LNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG
                     SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA"
     gene            32222..33196
                     /gene="yajO"
                     /locus_tag="OQQ76_000376"
     CDS             32222..33196
                     /gene="yajO"
                     /locus_tag="OQQ76_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414953.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxyxylulose-5-phosphate synthase YajO"
                     /protein_id="HCS1966985.1"
                     /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII
                     KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR
                     AQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH
                     ASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGR
                     LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK
                     PGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK"
     gene            complement(33250..33768)
                     /gene="pgpA"
                     /locus_tag="OQQ76_000377"
     CDS             complement(33250..33768)
                     /gene="pgpA"
                     /locus_tag="OQQ76_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HCS1966986.1"
                     /translation="MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLA
                     AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL
                     MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY
                     FIGHHWPLGILS"
     gene            complement(33746..34723)
                     /gene="thiL"
                     /locus_tag="OQQ76_000378"
     CDS             complement(33746..34723)
                     /gene="thiL"
                     /locus_tag="OQQ76_000378"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HCS1966987.1"
                     /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI
                     STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES
                     FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT
                     PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI
                     SDLGHIVKASDCGARIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR
                     GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP"
     gene            complement(34801..35220)
                     /gene="nusB"
                     /locus_tag="OQQ76_000379"
     CDS             complement(34801..35220)
                     /gene="nusB"
                     /locus_tag="OQQ76_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HCS1966988.1"
                     /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
                     VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV
                     AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK"
     gene            complement(35240..35710)
                     /gene="ribE"
                     /locus_tag="OQQ76_000380"
     CDS             complement(35240..35710)
                     /gene="ribE"
                     /locus_tag="OQQ76_000380"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HCS1966989.1"
                     /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV
                     KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA
                     HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
     gene            complement(35799..36902)
                     /gene="ribD"
                     /locus_tag="OQQ76_000381"
     CDS             complement(35799..36902)
                     /gene="ribD"
                     /locus_tag="OQQ76_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HCS1966990.1"
                     /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ
                     RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQD
                     PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR
                     TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL
                     YPQQNLRQPVRIVIDSQNRVTPEHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHK
                     GHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLC
                     TLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA"
     gene            complement(36906..37355)
                     /gene="nrdR"
                     /locus_tag="OQQ76_000382"
     CDS             complement(36906..37355)
                     /gene="nrdR"
                     /locus_tag="OQQ76_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HCS1966991.1"
                     /translation="MHCPFCFAVDTKVIDSRLVGGGSSVRRRRQCLVCNERFTTFEVA
                     ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGERE
                     VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED"
     gene            37506..38045
                     /locus_tag="OQQ76_000383"
     CDS             37506..38045
                     /locus_tag="OQQ76_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HCS1966992.1"
                     /translation="MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLN
                     QETVKITQQNRLNAKSSSGGYLLPGAKTPARLESQIGTLRMSLVNITPDTDGTTLTLR
                     IQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKG
                     ISVDQLGFVRIHDIQPVMQ"
     gene            38344..39228
                     /gene="tsx"
                     /locus_tag="OQQ76_000384"
     CDS             38344..39228
                     /gene="tsx"
                     /locus_tag="OQQ76_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-specific channel-forming protein Tsx"
                     /protein_id="HCS1966993.1"
                     /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS
                     YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI
                     EPRFSIDKLTNTDLNFGPFKEWYFANNYIYDMGRNKNGRQSTWYMGLGTDIDTGLPMS
                     LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG
                     DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN
                     FNVRSTGWGGYLVVGYNF"
BASE COUNT         9209 a        10460 c         9845 g         9857 t
ORIGIN      
        1 gcttccgtca gtgccgaaag gcgatgggca ctgatgatta ccgttcttcc ctgtccccac
       61 tgacgcaggt tatgcaggat ctggtgctct gtgcgtccgt ccaccgccga aagcgcatca
      121 tcaaggatga ggatttccgc gttgactaat aacgctcgag caatggagat acgctgtttt
      181 tgcccaccgg aaagcatcac gccgcgctcg cccacttctg tatcgtaacc ttgcggtaga
      241 cgcaaaatat cgtcatgtac gctggctaac cgcgcgacat gctcaatctc ttgctgggtg
      301 gcattcgggc aacccaacgc gatgttgttc gctacggtgt cggaaaaaag gaacggtgtc
      361 tggctaacta ccgccaggcg gctacgccag ctatcgagtt gtaacttcgt cagaggaata
      421 tcatgaaagc gaatatcccc ctcgctgacg tcgaaatgac gctgaatgag cgacaacagg
      481 gtacttttgc cggaaccagt cggcccgcag atacccagca tctgaccggg tttcagggcg
      541 aaattgacgt tttccagcgc aggatggtca gtctgcggat acgtgaacta gtgaatattt
      601 acatccagtt cgccacgccc ttccggcacg ggttcgctac catcgttcac caccggcgct
      661 tccgccagca tcgcgcgaat acggctgtat gcagcactac cacgttccac aatgttaaac
      721 atccatgcca gcgccagcat tggccaaatc atcagaccta aatacatcat aaaactggtg
      781 agctggccca gcgttaaact gccctgcacc accatccaac taccgccgcc aatcgccagc
      841 aagttcgcca taccaatcgc gatatagatg gtcgggtcga aacgagcatc aatacgcgcc
      901 acccgcatgt ttttttgccg gtatcttcgg catccgcggc aaataacgcc gactggcgat
      961 cttccagacc aaaggctttg atcatgcgga tactggtgag gctttcctgg gtgcggtcat
     1021 taagactaga aaacgccgcc tgtgccagct taaagcgttc atgcaaggca tcgccgttgc
     1081 gcttgatcat gatcgccatc actggcatcg gcaacagggc aaataaggtc aactgccagc
     1141 taatttgcgt agacatcata atcaacacag cgcagcccat caccagtgaa tccaccagcg
     1201 tcagcacccc ttctccggct gcaaacacga cgcgatcgac gtcattggtc gcacgagcca
     1261 tgaggtcacc cgtgcgatga cgcaggtaaa actcaggatg ctgccggctt agctgacggt
     1321 aataatcttc acgcagttca acagccagtt gataagacgc accaaacagc aatacccgcc
     1381 agacgtaacg caggaaataa accacaacgg caatcagcac catggtggcg atccacatca
     1441 ggatctgccc ggtagtaaag tgttgttctg tcacgccatc gacaacaata ccaaccactt
     1501 ttggcggaac cagttgcagc atcgcgataa tgacaagcaa ggcgacagcc ccgagatagc
     1561 gacgccattc ccgacggaaa taccagctta attgagcaaa taatcgcacg cgttgtgtcc
     1621 tgacctgatt ctggatattt attcgatggg taaagaagtg gtgtatttaa tctgttccat
     1681 cgcgaagctg gaagtgacgt ccgacagccc cggcacgctg tttaccagac gcttataaaa
     1741 ctcgtcgtag cgtttcatgt cggcaacctg gacgcgcatc agataatcgt attcaccagc
     1801 catgcgccag aaccccagca cttctggcat ttcggtaacc accgtgacaa agcggcaata
     1861 ccattcgctg ctgtgatgtt gcgtttttat cagcacaaag gcggtcaggc cgaggcctat
     1921 tttttccgga tccagcaggg cgactttgcc gataaggata ccgtcgtcct ccagccgttt
     1981 caggcgcttc cagcaagggg tggttgtcag attaacggct tcagccagtg cctgcaaaga
     2041 gagggtgcaa tcctgctgca gtaaggccag cagcttacgg tcaattttat ctaacatagc
     2101 ccttccacag agaatttttt tctcttttaa ttctatttta aaggtgaaat cacgacaatt
     2161 tattctgtgc ggtttaaaca ccacggcaca aaatgacaaa ttcaacgcaa aaaaaaccgg
     2221 gcaattgccc ggtgctggaa gggatctcat tattcggggg aataaggtag atgtggatag
     2281 tccagccagt gcgtcaaata gtgagagaca gcctgatttc ggcaatgtcc aatcaccggt
     2341 aaatgcggga gctccgcgcg cagttgcggc atcgcattgc ccataataaa cccgctaccg
     2401 acgctgccta acatttcgcg atcgttcatc gcatcaccaa aggccatgca atcgcgcaac
     2461 gataaaccta aatgttgggt cagcaccgtc aatgcagcgc ctttattgca gcccaccggc
     2521 agtacttcga ggcaatccgt ggcggaaaaa cacaaatgtg cacgctcgcc taatgcttcg
     2581 tatagctgga tctgcaagcg tgtaagatcg tcgtgatcgc cacagaagca gatcttggtg
     2641 acgctgccga gtggcatttt tttgacatcg attatctgat aacgaaaacc gctatagaca
     2701 aatgcctgca acaacgcagg gatctctttc ccggtaaacc aaccgtcgtc attgaagata
     2761 tgcatgctgg ctcgggtatc ccattgctga tacagcacca gctccgcgac atccgcaggt
     2821 aaatcatcac gatgtaaaag ttcaccttcc agagaatgca cgcgcgttcc gttgccggta
     2881 atcaaatatg catccagcga tagtgccccg agaatatgct gcatctccag cgcatgacgc
     2941 cccgtggcaa aagtgagggt aatgtcgcgt tcacgcagtc gcgccaaagt agagagggtt
     3001 ttctcaccta aatgatggtc aggcatcaat aaagtgccat ccatatcaaa tgctgccaga
     3061 cgagccattt ctttctccac tctgtgacac ggttaatgga gattgagtat cacctgatat
     3121 atacggaagt aatagtgaat agttaaataa tattgttccg ggtttatatg cgattgctca
     3181 accgtcttaa ccagtatcaa cgtctgtggc aaccttcagc cggaaagccg caaaccgtca
     3241 ccgtcagcga actggccgaa cgctgttttt gcagcgaacg ccatgttcgt acgctgttgc
     3301 gtcaggcaca ggaggcggga tggctggagt ggcaggcgca gtcaggacgc ggaaagcgcg
     3361 gacaattacg ctttctggtc acgccggaat cgctacgcaa tgcgatgatg gaacaggcac
     3421 tggaaaccgg aaagcagcaa gatgtgctgg agctggcgca actggcccca ggtgagctac
     3481 gcactctgtt acagccgttt atgggcggac aatggcaaaa cgatacaccc acgttgcgta
     3541 ttccctacta tcgcccgctc gaaccgctac aaccaggctt tttgcccggc cgtgccgagc
     3601 agcatctcgc cgggcagata ttttccggcc tgacccgctt cgataataat actcagcgcc
     3661 cgattggcga tttagcgcat cactgggaaa cctctactga cgggttacgc tgggactttt
     3721 atcttcgttc aaccctacac tggcataacg gcgatgcagt aaaagcctca cacttacacc
     3781 agcgattatt gatgctgtta caactgccag cactggatca attatttatt agcgtgaagc
     3841 gtattgaagt cacccatccg cagtgtctga ccttcttttt acatcgcccc gattactggc
     3901 ttgcgcaccg gctggcgagc tattgcagcc atctggcgca tccgcaattc ccactgatcg
     3961 gcactggtcc ttttcgctta acacaattca cagcggagct ggtgcgcctg gagagccatg
     4021 attattacca tttgcgtcat ccgctgctta aagcggttga gtactggata actccgccgc
     4081 ttttcgaaaa agatttggga accagttgtc ggcatcccgt gcaaatcacc atcggcaaac
     4141 cggaggagct gcaacgggtc agccaggtca gtagtggcat cagtttaggt ttttgctatt
     4201 taacgttgcg caaaagtccc cgactctccc tctggcaggc gcgaaaagtg atctccatta
     4261 ttcatcaatc cggtttatta caaacgttag aagtcggaga aaacctgatc accgccagtc
     4321 atgcattact gccaggctgg actattccgc actggcaagt accggatgaa gtcaaactac
     4381 cgaaaacctt gacgctggtt tatcacctac cgatagaact tcataccatg gcagaacgcc
     4441 tacaggcgac actggcagcg gaaggctgtg aactcacaat tatttttcat aacgcaaaaa
     4501 actgggacga cacgacccta ctggcacacg cagacctcat gatgggcgac agattaattg
     4561 gcgaagcacc ggaatatact ctggagcaat ggctacgttg cgatccacta tggccacatg
     4621 ttttcgacgc tccagcatat gcacatctgc aatcgacgct ggacgcggtg caagtaatgc
     4681 ctgatgagga aaaccgattt aatgccctga aagcggtttt tagccagtta atggcagacg
     4741 cgacgctgac gccgctgttc aactatcact atcgcattag tgcccctccc ggcgtgaacg
     4801 gtgtgcgact gacaccgcgc ggctggtttg aatttaccga agcctggctt cccgcgccgt
     4861 cgcaatgaat agctggtccg ggttaatcgc aggcgttacc ataacgcttt tattgttcaa
     4921 gcaggattat ctatgaaacg tgctgtcgtt gtgttcagtg gaggccagga ttccaccacc
     4981 tgtctggtgc aggcattaca acaatatgat gaagtccatt gcgtgacgtt cgattacggt
     5041 cagcgacatc gcgcagaaat cgacgtggca cgcgaactgg cgctgaaact gggagcacgc
     5101 gcgcataagg ttcttgatgt aacgctgctc aacgagctgg cggtcagcag cctgacacgt
     5161 gacagcattc cggtgcctga ttatgaacct gaagccgatg gcatcccgaa tacgtttgtc
     5221 ccagggcgta atattttgtt cctgacgctg gcggcaatat atgcgtatca ggtaaaagca
     5281 gaagccgtaa ttaccggcgt ctgtgaaacg gatttctccg gctacccgga ttgccgcgat
     5341 gagtttgtga aagcactaaa ccatgccgtc tgtttgggca tggcgaaaga tattcgtttt
     5401 gaaacgccgc tgatgtggat tgataaagcg gaaacctggg cgctggcaga ttattacggc
     5461 aaactggatt tagtccgtaa cgaaacgttg acctgctata acggcattaa aggcgacggt
     5521 tgcggtcatt gtgcggcatg taatttacgc gccaacggtt tgaatcatta tctggccgat
     5581 aaaccgacgg tgatggcagc gatgaagcag aaaaccgggt tgaggtaatt attccgggtg
     5641 tcgccggatg cggcttgagc atccggcacc acaaaacgtt tacttaacca tctgctccag
     5701 cttttcgcgc aattcccctt ccagagctaa tgctttctgc gttttaagat caatacaaac
     5761 aaacgtaata agcgcatccg ctaccacctg cccttccggc tccagtgtaa tgacctggct
     5821 taagatgccg cttttaccgt ttaattgctg caactgactg gtaatagtta acaggtcact
     5881 taataccgct gggcgacgat agttaatatt gatattgacc acgacgaagg cgatgttatg
     5941 ggccgtcatc cactgaaaac tgtcgctatt ttccaaccca tcccagcggg cttcttcgag
     6001 aaattcaagg tagcgggcgt tgttgacgtg ctggtaaacg tcgagatgat atccacgaac
     6061 tttgatttgt gtttgcatag cgcaataacc ttacgttgtt gttataagta cagaggtcat
     6121 aactggtatg acctcttcag tctggcaaaa aattgccact atgcaaatta attacagggt
     6181 taataccgcc agattacgtt ccaccagcga attgcccatc cccggcacct gctttagatc
     6241 ctccactgtt ttaaacggac cgtactcttc gcgataactg acaatcgcct gcgctttctt
     6301 caggccaacg ccattcatcg cgcgggctag ctcttccgcg ctggcattat taatgctgac
     6361 ccgggtgcct tcttcgtcac tggctttcgc cggtactgct gctttacttt gtgctgcagg
     6421 agcttccgct ttggtttcta ccgccgtcgg tttcgccaca gaagctgccg ccagcgcgct
     6481 atgagacatt ccggcacagg ccagggacag ggtaatgagc agtgctttaa ttccgtgttt
     6541 catactgttt tctccttgtt tgttaacagt ggaatcacct taacggcagt gaaaacagta
     6601 aacaaatggc aatgttcaga aatggaaaag gccgcgaaag cgaccttttc ttgttacagc
     6661 tgcaacgcat ttttttgcga ggcgtcttca ggattattgc tgttccagcg catcgccaat
     6721 tttgattttc gcctctttac gcaggttact catcagagct tcaaagacga tttgtgcgtt
     6781 gttctgggtg ataccctgca ccatcgcttt tttctgatct tccggcattg aaccttgttt
     6841 cacttcatcc agcgccagca gaaccacatt accttgcata tcggtcgcca taccgtagct
     6901 cggtttgtct ttcgctggca gtggcagtgc aaacgccgcc tggctaatcg ggtcacgacc
     6961 ggaacggctt aaggttttcg gctcgccaaa tttcagaccg gcagcctgca tagcttccgc
     7021 acctttgccg gctttcaaat caaccagcag tttctcagca tccactttcg cctgttgttc
     7081 agctttgttg tgctgaacca gtgccttaac ttgttcctga acatctgcca acggtttcac
     7141 cgcttccggt ttgtgctcgc tgatgcgcag cacgaatgca cggtcgccgt ctacggtgat
     7201 gatgtcagag ttgatgcccg gcgcgccgtt ttcacctacc agaccgccgt taaagatagc
     7261 gtcggcaacc ggcttgaagt tcaactcttc cggcaggtta tctttgctga accaacccgt
     7321 ctgagtggct ttaacgccgg cagcttgctc tgcaccggcc agagactcgg tgtcgttgct
     7381 tgccgcatcg ctcactttct gctgcagcgc atagtacgca tcgagggctt tttcgtgttt
     7441 cactttcgcc gcaatgtcgt cacgtacttc gtctaacgat ttcactttcg ctggatgaat
     7501 gtcgtccaga cgtacaatca ggaaaccgac cgaagatttg atgacaccag acagttggcc
     7561 tttttctttt agaccagcat ttttcagttc gtcggggata gtggcatctt ctaaccaacc
     7621 catatcgccg ccgttacggg cagagataat atcggcagat ttttctttgg ctaatgcagc
     7681 aaaatcaccg cctttattca gctcatcaag taccgctttc gcttcatctt cagttttggt
     7741 ctggatgatg ctgtagcggg tacgctgctg ctgggtgaat tgatcctgat gctgatcgta
     7801 gtagctctgg atatccgcat cgctaaccgg ttgctgcatc gttgcggcat ccagcttgat
     7861 gtaactcacg cggaattgtt ccggcgtcat gaaattgttt ttgttttgtt cgtagtagct
     7921 ggcaatctcc tgttcggtca caggctgctt cgccgccagc gcgttaacat cgatagtcgc
     7981 ctcacgcacc acgcgttgtt gcgcgaccag tgccgccagc tcgtcggttt cacctttcag
     8041 cataaaatcg gtaccggcaa caccgttaat cagctgttgg gtagtgagct ggttacgcag
     8101 cgcctgggcg tactgatcgg cggtcatccc catctggttg aggataccgt tatagcggct
     8161 gttatcaaat ttgccatcaa cctggaaggc tggggtcgcg aaaatcgcct gtttaacctg
     8221 ctcatcactg atacccagtt tcagctcacg agcgtactga tccaacagcg cctcgtcgat
     8281 cagacgattc agcacctgtt gacgcagggt tttcatatag ccttcattcg ctgccagctc
     8341 ggagtattga tcgcccagct gttgctgcat gcgattacgc tcgctgttaa aggcgttctc
     8401 gaactgccca cggctgattt cctggtcatt cacttttgcg gcgtagttat tgcctccgcc
     8461 aatcaggtaa ccactcacgc cggtcaatat gaacgacacg ataatgatac cgaaaataat
     8521 cttgagcacg agactgtttg cagccgtgcg taagctgtcc atcatggtgt aacaacactc
     8581 cgctgtagat gactgtgtac ctcacgcaac gtatcgatgc gcgcaaaggc ctattgtgac
     8641 aagaaacggg ggcaattgtc agcccacaag acgcagaaag tcaccgaata caaataaaaa
     8701 aggcacatca gtagatgcgc ccttgaactt cgtcacatcc ccaccgggga caacgcttag
     8761 tttaccgcgt ctttcagtgc tttacctgca cggaagctcg gtactttagc agcagcgatg
     8821 gtgatctctt taccggtctg cgggttgcgg ccagtacggg cagcacgctc tttaacggca
     8881 aaagtaccaa aacctaccag tgctacatca tccccttctt tcagagattc agttacggaa
     8941 gcaataatag catctaacgc acggccagcc gcagctttag agatatcagc ccctgcagca
     9001 atcttgtcga tcaattgaga tttattcact cttctcttcc tctttataat ttatatcgca
     9061 cttgaatcct tcaaggtacg aacgcgcagc agttatatca ggccagccat ccccttacaa
     9121 caccccttaa taagggcaag cccgatccgc catctaactt agcgagacaa aaaaaggctg
     9181 gcaagcccga attagcctgc cagccctgtt tttattagtg cattttgcgc gaggtcacta
     9241 ttttgcagtc acaacctgca tgccagacgg ttcattttgc agcgccagag tcagaacttc
     9301 ctcaatgcgc ttcacaggat gaatgtccag atcggcaatt acgttgtcag gaatctcttc
     9361 cagatcgcgt ttattttcga acggaattag cactgtttta atcccgccgc gatgcgctgc
     9421 caggagtttt tctttcaaac caccgatcgg cagtacctga ccacgcagag tgatctcacc
     9481 ggtcattgcc acatcggcac gaaccgggtt accggtcagg caagaaacca gcgcggtgca
     9541 catagcaata ccggcactcg gaccatcttt cggcgtcgca ccttccggta cgtggacgtg
     9601 gatgtcacgt ttttcgtaaa aatcagggtt gatccccagt ttttccgcac gcgcacgaac
     9661 caccgttaac gccgcctgaa tagactcctg catcacttcg ccgagcgaac cggtataggt
     9721 cagtttgcct ttacccggaa cacatgcggt ttcaatggtc agcaagtcac cgcccacttc
     9781 cgtccacgcc agaccggtta cctgaccgac acagttttcg ttatcagcgc gaccatagtc
     9841 gaaacgctga acaccgaggt agtcatgcag gttatcgccg ttaatttcga tatgttttaa
     9901 tgacttatcg agcagtaact gcttaaccgc tttgcggcac agtttggaga tttcacgctc
     9961 cagaccacgc acgcccgcct cacgggtgta gtaacgaata atgccgataa tggcgctatc
    10021 gtcgacggtc agctcacctt ttttcagtgc attacgttca atctgcttcg gcagcaggtg
    10081 acgtttggcg atgttcagtt tttcatcttc ggtataaccg gagaggcgaa tcacttccat
    10141 acgatccagc agcggtgccg gaatgttcat ggagttcgac gtcgcgacaa acatcacgtc
    10201 gctgagatcg taatccactt ccaggtagtg gtcgctgaac gctacgttct gctctggatc
    10261 cagcacttca agcagtgcag aggccggatc gcctcgcatg tcagaagaca ttttgtcgat
    10321 ctcatcgagc aggaacagcg ggtttttcac gcccactttc gccattttct ggatcagttt
    10381 acccggcata gaaccgatgt aagtacggcg gtgaccacgg atttccgctt catcacgcac
    10441 gccgcccagc gccatacgga catatttacg cccggtggct ttggcaatgg actgaccaag
    10501 agaggtttta cctacccccg gcggccctac caggcagagg atcggtccct tgattttgtt
    10561 gacacggctt tgaaccgcaa ggtactcaag gatgcgatct ttcacgcgct ccagaccata
    10621 atggtcggta tcaaggattt cctgcgcctg acgcaggtct tttttgacct tgctgcgcgc
    10681 attccacggt acctgtacca tccagtcgat ataaccacgc actacggtcg cttctgccga
    10741 catcggagac atcattttca gcttctgcaa ctctgcttcc gctttctctt ttgcctcttt
    10801 cggcatcttc gccgcgtcga ttttgcgctt cagggcttcg ttttcgtccg gcgcgtcgtc
    10861 catttcaccg agttctttct gaatagcttt catttgctcg ttcagatagt actcacgctg
    10921 ggatttctcc atctgctttt taacgcggtt gcgaatgcgt ttctcaacct gcagcagatc
    10981 gatttccgat tccatcattg ccatcagata ttccagacgt tcgttaacgt cggacatctc
    11041 cagaacggac tgtttgtcag ccagtttcag tggcatatgt gcagcaatgg tatccgccag
    11101 acgcgccgga tcgtcgatgc tattcagcga cgtcagcact tctggtggga tttttttgtt
    11161 cagcttgatg tagccttcga actggctgat tgcagtacgc accagcactt cctgttcccg
    11221 ctcatcaatg gtcggcgact ccagatactc cgccttcgca gaaaagtgtt cgccattgtc
    11281 agagagcgca gaaatacgcg cgcgctgtaa cccctcgacc agcactttga cggtgccgtc
    11341 aggcagtttc agcatctgca atatagaggc cacggtcccg acggtgaaaa gatcgtttac
    11401 acccggctca tccgttgaag cttctttctg cgcgaccagc ataatttttt tatcatggtc
    11461 catcgccgct tccagacaac ggatagattt ttcccgcccg acaaataagg ggatgaccat
    11521 gtgcggataa accaccacat cgcgcagcgg caatacgggg atttcaatgc gttcagaacg
    11581 ctcaggattc atagagctct ctcttagttt aatttccgcc aggtaatcag atgacacgac
    11641 tgtgcttcac gccatctatt aacatgtacg tcagtatatg gggatgtttc ccccacattc
    11701 aacgccgaga atagaggaaa aattaaaggg gagataaaat cccccctttt tggttaacta
    11761 attgtatggg aatggttaat tattcaccag atgcctgttg cgcttccggc ttaccataaa
    11821 tcagcaacgg tttgctttga ccatcaatta ccgactcgtc gataaccact ttttcgacat
    11881 cttccatgga cggcagatcg tacatggtat cgagcagtgc ggcttctacg atggaacgca
    11941 ggccacgggc accggtttta cgcgccatcg ctttcttagc gatagcatcc agcgcctcgt
    12001 cacggaattc cagatccacg ccttccagat taaacagcgc ctgatactgc ttggtcaggg
    12061 cgtttttcgg ctctttgagg atctgaatca gagcttcttc gctcagttca ttcaacgttg
    12121 cgacaaccgg cagacgacca ataaactcag ggataagacc aaacttgatc agatcttccg
    12181 gttcaacctg cgccagcagc tcgccttcgc ttgctttgtc ggacttcgct tttaccgtcg
    12241 cgccaaaacc aatgccggag ccggtttcta cacggtggga aatcacttta tccagaccgg
    12301 caaacgcacc gccacaaata aacaggatct tggaggtatc aacctgcaaa aattcctgct
    12361 gcggatgctt acgcccgccc tgcggtggaa cggcagcaac agtaccttcg atcagtttca
    12421 acagtgcctg ctgtacgcct tcaccggaaa cgtcacgggt aatagacggg ttgtccgact
    12481 tacgagaaat cttgtcgatt tcatcgatgt agacaatacc acgctgtgct ttctggacat
    12541 cgtagtcgca tttctgcaac agcttctgaa tgatgttttc aacgtcttca cccacataac
    12601 cggcttcggt cagtgtagtc gcgtcggcca tggtgaacgg aacatccagc aggcgcgcca
    12661 gcgtttcagc cagcagcgtt ttaccggaac cggtcggacc gatcagcaga atgttacttt
    12721 tgcccaactc gacaccattg ctggtatctc cgttgcgcag acgtttgtaa tggttgtata
    12781 ccgcgaccgc cagcactttt ttcgcctgtt cctggccgat aacgtaatcg tccaggtggt
    12841 tgcgaatttc atgcggcgtc ggtagcgcac tgcgttcacg atgcggtgca acttctttaa
    12901 tctcttcgcg aatgatgtcg ttacataaat caacacattc gtcgcagata tacacggatg
    12961 gaccggcaat cagcttgcgc acttcatgct ggcttttgcc gcaaaaagag caatacagca
    13021 atttgcctga gccatctttg cgtttatctg tcatgggtca aaacctcttc tttgttcttt
    13081 gtgccgcaca cgacgacgca aatgccattc tcaggcgcaa gccgcttaca gcgttgtgcc
    13141 cccctggata agtatagcgg cacagttgcg cctctggcat caattacgat gggtcagaat
    13201 cgaatcgacc agaccgtatt ccaccgcttc aggggcggaa aggaagcgat cgcgctcggt
    13261 atcacgttca atctgttcta atgattgacc cgtatgaagc gccataagtt cattcatgcg
    13321 ccctttaact ttcagaattt cacgggcatg aatttcgata tcggtcgcct ggccctggta
    13381 gccgcccaac ggttggtgaa tcatcacgcg cgaattcggc aggcaaaaac gtttaccttt
    13441 tgcccctgcg gtcagcaaga aagcgcccat cgaggccgcc tggcccatac agatggtgct
    13501 gacatcaggc ttgataaact gcatggtgtc atagatagac atcccggcag tgatcacccc
    13561 gcctggggag ttaatgtaca gatagatatc tttttctggg ttttccgctt ccaggaacag
    13621 catctgcgcc acaatcaggt tagccatgtg gtcttcaacc tggccagtca gaaaaatgac
    13681 gcgttcctta agtagacgag aatagatatc aaaagagcgc tcaccgcgtg aggtctgttc
    13741 aatgaccatc ggcaccagcg ccatatgggg tgcaaagtta tctcgttcgc cgctgtatga
    13801 catttccgtc tcctggataa aattgaaaaa acctgctgta ccgattgtaa ccttatggac
    13861 ggattatcag ctagtccctg tgttatgggt acggcatcac catatttcaa gcataacaat
    13921 cttttgttgt tacgctaaca ccgaaagagg cttttcgcac ggttccatgc aaaattcatg
    13981 acaaaaaaaa gcccaccacc tggcggtgac gggcctttgt gcgaatttag cgcgttatgc
    14041 tgcgtaaatt acgcctgctg gttcatcagc tcgttgaaag tggtttcttt ttcagtcact
    14101 ttcgctttcg ccagtacagc ttcaacagcc tgttcttcca gagcaacatt gcgcatgttg
    14161 tccatcagtt ctttgttttt gctgtagaac tcgataactt ctttcggatc ttcgtacgca
    14221 gaagccatct cttcgatcag gcctttcacg cgctcttcgt cagctttcag ctcgttggtg
    14281 cggataactt cgcccagcag caggccaaca actacgcggc gtttagcctg ttcttcgaac
    14341 agttcgcgcg gcagttccag agcttgtttt tcgttgccac cgaaacgctg tgcagcctgg
    14401 cgacgcagaa cgtcgatttc gctgtcgatc agcgcagccg gtacgtcgat gtcgttagct
    14461 tttaccagac cttcgatcgc ctgagactta acgcggttac ggatggcgct cttcagctcg
    14521 cgctccatgt ttttacgcac ttcagcgcgc agaccttcta cggaaccatc ttcaacgccg
    14581 aaacgtttga tgaattctgc agtcagttcc ggcagttcac gctcttcaac tttcttcagg
    14641 ttgatagcga atttcgctgc tttacctttc aggttttctg cgtggtattc ttccgggaag
    14701 gtcacgtcga tggtgaactc ttcgccagct ttgtggcctt tgataccgtc ttcaaagccc
    14761 gggatcatac gaccctggcc catcgccagt acgaaatcag acgctttacc gccttcgaac
    14821 tcttcgctgt ctacagaacc ggtgaagtcg atggttacgc ggtcttctgc ttcaacagcg
    14881 ccgtcttttt ctttccaggt cgcctgctgt ttacgcagag tatccagcat gccgtcaacg
    14941 tcagcgtcgg tcacttcaac gatcggtttt tcaacttcga tcgcttccag accctgcagt
    15001 tcaacttccg gataaacttc aaactctaca gagtaagtga agtcttcacc cagcttgtat
    15061 tcgcccggaa cataagtcgg tgcgccagcc ggattgattt tttctttaat gatggcgtca
    15121 atgaagttac ggctcatcag gtcacccaga acgtcctggc gtacagacgc gccataacgc
    15181 tgagcaacga tattcattgg cactttgcct ttgcggaagc cgtcaatacg tacttttttc
    15241 gcaacgttga ccagctcgct tttaacagcg gtctcgatgc tgtcagcagc gatagtaatc
    15301 gttacacggc ggccaaggcc ttgagtggtt tcaactgaaa cttgcatctt gttacctcaa
    15361 aaaatcacag tgctcggtca actcttaccc cgcaagcaca ggttgttggc ttcgcggaac
    15421 cgggatgttc ttataatcaa tcacattccc tgttaccaga atcatcccga aagcattcaa
    15481 ataggacgcg gcattatagc ggcatcactt ttatgagtcg agaacggtta ttgcgcgctg
    15541 tcgcgtattt tttcacaatt cccgggcaat tttcgtctga atgctgggca aaaagcgcaa
    15601 aatccagaca aaacaaaacg gcccgcaggc cgtttttcat aaaatcttta gcaacatact
    15661 gaaaaagcgc cgacagttgc aaatgcgttt ttacgcgatg cttcctgctc cacgacaggg
    15721 aggagaggca aagacggtgt cctgcaaccc ttcccactcc ttaatagtgt aagtatgcag
    15781 agccagcgca tgaacggtag tagagagttc ctccgctaaa gtactgtaaa tcattcgatg
    15841 acgattcaga aaacgttcac ccgtaaaacg atcgctgacc agcacaactt taaaatggct
    15901 ttcagagccg gctgggacat tgtgacgata gctttcatcc actacttcga ggaatacggg
    15961 ttggaacgcc gcccttaatt tttcttctat ccgctcacgt atcatcatga aatatctcct
    16021 ccgacaacgc tgagatgtca tccatccctt taaatactag ccgcttttac cgtttccatt
    16081 gcagcttaac aacaaatatt taggtttcgt cctggttttt ccgtcaagcg tatgaagttt
    16141 actgatttaa agattgaaac acaggcctcg catcagcgtt tcttttacca ggggtgatta
    16201 tttcgtcaac atgatgaatt tacatgcctt acccacttcc cctcgccgtt ggcaatgtta
    16261 tgatggcggg aatttttacc aaacacgctt aagagtctct gagagcccga acatgttcaa
    16321 aaaaatcctc ttcccgttag ttgctctgtt tatgcttgca ggatgcgcaa aaccgccaac
    16381 aactattgaa atttccccga cgattacact gccacagcag gatccaagcc tgatgggcgt
    16441 caccgtaagc attaatggtg ccgatcagcg taccgatcag gcgctggcaa aagtcacccg
    16501 cgataatcaa atcgttaccc tgaccgcctc ccgcgatctg cgtttcctgc tgcaagaagt
    16561 gctggaaaaa cagatgaccg cgcgtggtta catggttggt ccgaatggcc cggttaatct
    16621 gcaaatcatc gttagccaac tgtatgctga cgtgtcccag ggcaacgtgc gctacaacat
    16681 cgctaccaaa gcggatatcg ccatcatcgc taccgcgcag aatggcaaca aaataaccaa
    16741 aaactatcgt gccagctaca acgttgaagg tgcgttccag gcctccaaca aaaatatcgc
    16801 cgatgcggtt aacagtgtgc tgaccgatac catcgctgat atgtctcagg acaccagcat
    16861 tcacgaattc atcaagcaga acgcgcgtta atttctgccc tctggcccgg tgcaaaccgg
    16921 gcctgtagac gcccatgtcc agtcaatatt tacgtatttt tcaacagccg cgttcagcca
    16981 tattgctgat cctgggtttt gcttccgggc taccgctcgc cctgacatcc ggtaccttac
    17041 aggcctggat gacggtcgag aatattgatc tcaaaaccat tggtttcttc tctctggtag
    17101 gccaggctta cgtttttaaa ttcctctggt caccgctgat ggaccgctac acgcccccat
    17161 tttttgggcg gcggcgcggt tggctgctcg ccacgcaaat cctgttatta gtcgccattg
    17221 cggcgatggg ttttctcgaa cctggcaccc aactccgctg gatggcggca ctggcggtgg
    17281 tgatcgcttt ttgctcggcc tcccaggata ttgtcttcga tgcgtggaaa accgatgtgc
    17341 tcccggcaga agaacgtggt gcgggcgcgg caatcagcgt gctgggttac cgtttaggga
    17401 tgctggtttc cggcggctta gccctgtggc tggcagataa atggctgggc tggcagggca
    17461 tgtactggtt gatggcggcg ctgttgatcc cttgtattat cgcgacgttg cttgcaccag
    17521 aaccgaccga caccattcct gtgccaaaaa cgctggaaca agcggttgtt gcacctctgc
    17581 gagatttctt tggtcgcaat aatgcctggc ttattttgct tcttatcgtg ctgtataagc
    17641 tgggcgacgc attcgccatg agcctgacaa ccacgttttt gattcgcggc gtcgggtttg
    17701 atgcgggtga agtaggcgtg gttaacaaaa cgcttggctt actggcgacc attgtgggcg
    17761 cattgtacgg tgggattttg atgcagcgcc tgtcgctgtt ccgggcgctg ctgattttcg
    17821 gcattttaca aggtgcgtct aacgctggtt actggctgct gtcgattact gataagcatc
    17881 tctacagcat gggcgcagcc gtctttttcg aaaacctctg tggcgggatg ggcacatcag
    17941 cctttgtcgc gctgttaatg acgctgtgta ataagtcatt ttccgctact caatttgccc
    18001 tgctctcagc gctttccgct gtaggacgag tttatgtcgg ccccgtggcg ggttggtttg
    18061 ttgaagcaca cggctggtcg acattctatc tattctccgt cgccgctgcc gtaccggggc
    18121 ttattttgct gctggtttgc cgccagacgc ttgaatatac acgagtaaat gacaacttta
    18181 tctcccgtac cgaatatccg gcaggttatg cctttgccat gtggacactg gcggcgggcg
    18241 tcagcctgtt ggccgtgtgg ttactgctgt tgacgatgga cgcgctggat ttgacgcact
    18301 tctctttcct gcctgctctg ctggaagtcg gggttttagt cgccctttct ggcgtcgtgc
    18361 ttggtggttt gctggattat ctggctctac gaaaaacgca tctgacgtaa tctgtaaata
    18421 ttatttagct gtagtaatca ctcgccgtaa ttattacggc taaataaaca tcagtatcgc
    18481 ttaataatat ttgttctttt gtgcggctta gcgtttggaa attattgacg caatttatga
    18541 attctatttt ttcttacacg attcagctaa cgagtcttta ttttcccccc acccaattgt
    18601 caccataatg ataattattt gttaaacaat tattttattc cagattggtt ataccaattg
    18661 cccgtccaaa ctccttctgc actccccttt cgttataacg cccttttgca acagcttctt
    18721 aaaattaact tgatatgttt tgcaacatat gtgacctgac agccaaatcc aagtaacagg
    18781 aatttaatca tgtttacagt aatgtaacct tcccgtaaaa cgcccacaca ctttaaacgc
    18841 caccagatcc cgtggaattg aggtcgttaa atgagactca ggaaatacaa taaaagtttg
    18901 ggatggttgt cattatttgc aggcactgta ttgctcagtg gctgtaattc tgcgctgtta
    18961 gatcccaaag gacagattgg tctggagcaa cgttcactga tactgacggc atttggcctg
    19021 atgttgattg tcgttattcc cgcaatcttg atggctgttg gtttcgcctg gaagtatcgt
    19081 gcgagcaata aagatgctaa gtacagcccg aactggtcac actccaataa agtggaagct
    19141 gtggtctgga cggtacctat cttaatcatc atcttccttg cggtactgac ctggaaaacc
    19201 actcacgctc ttgagcctag caagccgctg gcacacgacg agaagcccat taccatcgaa
    19261 gtggtttcca tggactggaa atggttcttc atctacccgg aacagggcat tgctaccgtg
    19321 aatgaaatcg ctttcccggc gaacactccg gtgtacttca aagtgacctc caactccgtg
    19381 atgaactcct tcttcattcc gcgtctgggt agccagattt atgccatggc tggtatgcag
    19441 actcgcctgc atctgatcgc caacgaaccc ggtacttatg acggtatctc cgccagctac
    19501 agcggcccgg gcttctcagg catgaagttc aaagctattg caacaccgga tcgcgccgaa
    19561 ttcgaccagt gggtcgcaaa agcgaagcag tcgccgaaca ccatgtctga catggctgcg
    19621 ttcgaaaaac tggccgcgcc tagcgaatac aaccaggtgg aatatttctc caacgtgaaa
    19681 ccagacttgt ttgctgatgt gattaacaag tttatggctc acggtaagag catggacatg
    19741 acccagccag aaggtgagca cagcgcacac gaaggtatgg aaggcatgga catgagccac
    19801 gcggaatccg cccattaaag gggttgagga agaataaaga tgttcggaaa attatcactt
    19861 gatgcagtcc cgttccatga acctatcgtc atggttacga tcgctggcat tattttggga
    19921 ggtctggcgc tcgttggcct gatcacttac ttcggtaagt ggacctacct gtggaaagag
    19981 tggctgacct ccgtcgacca taaacgcctc ggtatcatgt atatcatcgt ggcgattgtg
    20041 atgttgctgc gtggttttgc tgacgccatt atgatgcgta gccagcaggc tcttgcctcg
    20101 gcgggcgaag cgggcttcct gccacctcac cactacgatc agatcttcac cgcgcacggc
    20161 gtgattatga tcttcttcgt ggcgatgcct ttcgttatcg gtctgatgaa cctggtggtt
    20221 ccgctgcaga tcggcgcgcg tgacgttgcg ttcccgttcc tcaacaactt aagcttctgg
    20281 tttactgttg ttggtgtgat tctggttaac gtttctctcg gcgtgggcga atttgcgcag
    20341 accggctggc tggcctatcc accgctatcg ggaatagagt acagtccggg agtcggtgtt
    20401 gattactgga tatggagtct ccagctatcc ggtataggta cgacgcttac cggtatcaac
    20461 ttcttcgtta ccattctgaa tgatgcgcgc accgggcatg accatgttca agatgccagt
    20521 atttacctgg gcatcactgt gcgcgaacgt actgattatt gcttccttcc caattctgac
    20581 ggttaccgtc gcgttgttga ccctggatcg ctatctgggc acccatttct ttaccaacga
    20641 tatgggtggc aacatgatga tgtacatcaa cctgatttgg gcctggggcc acccggaagt
    20701 ttacatcctg atcctgcctg ttttcggtgt gttctccgaa attgcggcaa ccttctcgcg
    20761 taaacgtctg tttggttata cctcgctggt atgggcaacc gtctgtatca ccgtgctgtc
    20821 gttcatcgtt tggctgcacc acttctttac gatgggtgcg ggcgcgaacg taaacgcctt
    20881 ctttggtatc accacaatga ttatcgccat cccgaccggg gtgaagatct tcaactggct
    20941 gttcaccatg tatcagggcc gtatcgtgtt ccattctgcg atgctgtgga ccatcggttt
    21001 tatcgtcact ttctcggtgg gcgggatgac tggcgtgctg ctggcagtac cgggcgcgga
    21061 cttcgttctg cataacagcc tgttcctgat tgcgcacttc cataacgtta tcatcggcgg
    21121 cgtggtcttc ggctgcttcg cagggatgac ctactggtgg cctaaagcgt tcggtttcaa
    21181 actgaatgaa acctggggta aacgcgcgtt ctggttctgg atcatcggct tcttcgttgc
    21241 ctttatgccg ctgtatgcgc tgggcttcat gggcatgacc cgtcgtttga gccagcagat
    21301 tgacccgcag ttccacacca tgctgatgat tgcagctagc ggtgcagtac tgattgcgct
    21361 gggtattctc tgcctcgtta ttcagatgta cgtttctatt cgcgaccgcg accagaaccg
    21421 tgacctgact ggcgacccgt ggggtggccg tacgctggag tgggcaacct cttccccgcc
    21481 tccgttctat aactttgccg ttgtgccgca cgttcacgag cgtgatgcat tctgggaaat
    21541 gaaagagaaa ggcgaagcgt ataaaaagcc tgaccactat gaagaaattc atatgccgaa
    21601 aaacagcggt gcaggtatcg tcattgcagc tttctccacc atcttcggtt tcgccatgat
    21661 ctggcatatc tggtggctgg cgattgttgg cttcgcaggc atgatcatca cctggatcgt
    21721 gaaaagcttc gacgaggacg tggattacta cgtgccggtg gcagaaatcg aaaaactgga
    21781 aaaccagcat ttcgatgaga ttactaaggc agggctgaaa aatggcaact gatactttga
    21841 cgcacgcgac tgcccacgcg cacgaacacg ggcaccacga tgcaggcgga accaaaatct
    21901 tcggattttg gatctacctg atgagcgact gcattctgtt ctcaatcttg tttgctacct
    21961 atgccgttct ggtgaacggc accgcaggcg gcccgacagg taaggacatt ttcgaactgc
    22021 cgttcgttct ggttgaaact ttcttgctgt tgttcagctc catcacctac ggcatggcgg
    22081 ctatcgccat gtacaaaaac aacaaaagcc aggttatctc ctggctggcg ttgacctgtt
    22141 tgtttggtgc cggatttatc gggatggaaa tctacgaatt ccatcacctg attgttaacg
    22201 gcatgggtcc ggatcgcagc ggcttcctgt cagcgttctt tgcgctggtc ggcacgcacg
    22261 gtctgcacgt cacttccggt cttatctgga tggcggtgct gatggtacaa atcgctcgtc
    22321 gcggcctgac cagcactaac cgtacccgca tcatgtgcct gagcctgttc tggcacttcc
    22381 tggatgtggt ttggatctgt gtgttcactg ttgtttatct gatgggggcg atgtaatgag
    22441 tcattctacc gatcacagcg gcgcgtccca tggcagcgta aaaacctaca tgacaggctt
    22501 tatcctgtcg atcattctga cggtgattcc gttctggatg gtgatgacag gggctgcctc
    22561 tccggccgta attctgggaa caatccgggc aatggcagtg gtacaggttc tggtgcatct
    22621 ggtgtgcttc ctgcacatga ataccaaatc agatgaaggc tggaacatga cggcgtttgt
    22681 cttcaccgtg ctaatcatcg ctatcctggt tgtaggctcc atctggatta tgtggaacct
    22741 caactacaac atgatgatgc actaagagcg gcggttatga tgtttaagca atacctgcaa
    22801 gtaacgaaac caggcatcat ctttggcaac ctgatctcgg tgattggggg attcctgctg
    22861 gcctcaaagg gcagcattga ttatcccctg tttatctaca cgctggttgg ggtgtcactg
    22921 gttgtggcgt cgggttgtgt gtttaacaac tacatcgaca gggatatcga cagaaagatg
    22981 gaaaggacga agaatcgggt gctggttaaa ggcctgatct ctcctgctgt ctcgctggtg
    23041 tacgtcacct tgctgggtat tgctggcttt atgctgctgt ggtttggcgc gaatccgctg
    23101 gcctgctggc tgggggtgat gggctttgtg gtttatgtcg gcgtctatag cctgtacatg
    23161 aaacgccact cagtctacgg cacattgatt ggttcgctct ccggcgctgc gccgccggtg
    23221 attggctact gtgcagtaac cggcgagttc gatagcggcg cagcgatcct gctggctatc
    23281 ttcagcctgt ggcagatgcc tcactcctat gccatcgcca ttttccgctt taaggattac
    23341 caggcggcaa acattccggt attgccagtg gtaaaaggca tttcggtggc gaagaatcac
    23401 atcacgctgt atatcatcgc ctttgccgtt gccacgctga tgctctctct tggcggttac
    23461 gctggatata aatatctggt ggtcgccgcg gcggttagcg tctggtggtt aggtatggct
    23521 ctgcgcggtt ataaagttgc tgatgacaga atctgggcgc gcaagctgtt cggcttctct
    23581 atcatcgcca tcactgccct ctcggtgatg atgtccgttg attttatggt accggactcg
    23641 catacgctgc tggctgctgt gtggtaacaa aacctctcta ttaaaaaggt gctacggcac
    23701 cttttttctt agcattagaa acatatccct ctcgaaatat ttactaaaaa atccgcatgt
    23761 ttaccccatt cgtttgccgc tttacactag tcgcgaattt aaaacagagg tggtaatgaa
    23821 cgattataaa atgacgccag gtgagaggcg cgcgacctgg ggtttaggga ccgtattctc
    23881 gttgcgcatg ctgggcatgt ttatggttct gccggttctg accacgtatg gcatggctct
    23941 gcaaggtgcc agcgaagcat taatcggtat tgccattggt atttatggtc tgactcaggc
    24001 cgtttttcag attccgtttg gcctgctttc cgaccgtatt ggtcgcaaac cattaattgt
    24061 cggtgggctg gcggtgtttg ccgccggtag cgttatcgct gcgctctctg actccatctg
    24121 gggaattatt ctgggccggg cgctacaagg ctccggtgcg attgccgctg ccgttatggc
    24181 gctgctttcc gatctcacgc gcgaacaaaa ccgcaccaaa gcaatggcgt ttatcggcgt
    24241 gagctttggc attacctttg ccattgcgat ggtgcttggc ccgatcatca ctcacaaact
    24301 tgggctgcac gcgctgttct ggatgatcgc tattctggca acgaccggca ttgcgttgac
    24361 catttgggtt gtgcccaaca gtagcactca cgtacttaat cgtgagtccg gaatggtgaa
    24421 aggcagtttc agtaaagtgc tggcggaacc gcggctgctg aaactcaact ttggcattat
    24481 gtgtctgcat attttgctga tgtcgacgtt tgttgccctg cccggacaac tggctgatgc
    24541 agggttcccg gcggctgaac actggaaggt ctatctggcg acaatgctaa tcgcctttgg
    24601 ctcggtcgtg cctttcatta tctacgctga agttaagcgc aaaatgaagc aagtctttgt
    24661 cttctgcgtc gggttgatcg tggttgcgga aattgtgttg tggaacgcgc aaacgcagtt
    24721 ctggcaactg gtggtcggcg tgcagctttt ctttgtagcg tttaatttga tggaagccct
    24781 tctgccttca cttatcagta aagagtcgcc agcaggttac aaaggtacag cgatgggtgt
    24841 ttactccacc agccagtttc ttggcgtggc gattggcggt tcactgggcg gctggattga
    24901 cggcatgttt gacggtcagg gcgtatttct cgctggcgca atgctggccg cagtgtggct
    24961 ggcagtcgcc agtaccatga aagaaccggc gtatgtcagc agtttgcgca ttgaaatccc
    25021 ggcgaacatt gccgcaaacg aggcgttaaa agtgcgtttg ctagaaactg aaggcatcaa
    25081 agaagtgttg attgcagaag aagaacattc agcttatgtg aaaatcgaca gcaaagtgac
    25141 gaatcgcttt gatgttgaac aggcaattcg ccaggcataa aagcgaggcg aaattgcctg
    25201 cagcgctacg ctcatcaggt ctactaagct cctgatttac aagcctttgt aggccgaacc
    25261 aggcgttcat gccgcatctg acatgaacaa agcgcaggtt gtcgcgatta atcgcggaag
    25321 tttttgaact ggaacggctg acccagatcg ccaccgcgca ccatcgccat gacagcctgc
    25381 aaatcatcac gagatttgcc agtcacgcgg atctcatcgc cctgaatttg cgcctgcact
    25441 ttcagtttgc tgtctttgat catcttgacg atttttttct gggtcgcgct ctcaatgccc
    25501 tgcttcagtt tcgcttccac aaaccaggtt ttaccgctat gaacgatatt ttccggtaca
    25561 tccagtgaac tgccttcaat gccgcgcttc agcagcttgg cacgcagaat atccagcaac
    25621 tgattgacct ggaaatcgga ctcgctcaac actttgatgg ttttgctggc gtcgttcagc
    25681 tcaaatgagg cttcaacgtt acggaagtca aaacgggact ccacttcgcg gctcgcgtta
    25741 tcgaccgcgt tacgtgcttc ctgaagatca acttcagaga caatatcgaa agatggcatc
    25801 ttttcctctc ccttcatttt tgatgcgaag cataataccc gcaaagttaa ataaccgaca
    25861 gtcctgcacc aggacgtatc ccttaattgt gcatagtcgc aacagcatgc acaattaagg
    25921 gatagcctta ttgaacaccc ggagtggttg cgggtgagga ggaacaatga aaattaccgt
    25981 attgggatgc ggtgccttag ggcaattatg gcttacagca ctttgcaaac agggtcatga
    26041 agttcagggc tggctgcgcg taccgcaacc ttattgtagt gtgaatctgg ttgagacaga
    26101 tggttcgata tttaacgaat cgctgaccgc caacgatccc gattttctcg ccaccagcga
    26161 tctgctcctg gtgacgctga aagcatggca ggtttccgat gccgtcaaaa gcctcgcgtc
    26221 cacactgcct gtaaccacgc caatactgtt aattcacaac ggcatgggca ccatcgaaga
    26281 gttgcaaaat attcagcagc cattactgat gggcaccacc acccatgccg cccgccgcga
    26341 cggcaatgtc attattcatg tggcaaacgg tatcacgcat attggtccgg cacggcaaca
    26401 ggatggcgat tacagttatc tggcggatat tttacaaacc gtgttgcctg acgttgcctg
    26461 gcataacaat attcgcgccg agctgtggcg caagctggca gtcaactgcg tgattaatcc
    26521 actgaccgcc atctggaatt gcccgaacgg tgaattacgt catcatccgc aagaaattat
    26581 gcaaatatgc gaagaagtcg cggcagtgat cgaacgcgaa gggcatcata cttcagcgga
    26641 agatttgcgt cattacgtga tgcaggtgat tgatgccaca gcggaaaata tctcgtcgat
    26701 gttgcaggat atccgcgcgc tgcgccacac cgaaatcgac tatatcaatg gttttctctt
    26761 acgccgcgcc cgcgcgcatg ggattgccgt accggaaaac acccgcctgt ttgaaatggt
    26821 aaaaagaaag gagagtgaat atgagcgcat cggcactggt ttgcctcgcc cctggtagtg
    26881 aagagactga agccgtcacc acgatcgacc tcttggttcg cggcggtatc aaagtcacca
    26941 ctgccagcgt agccagcgat ggcaacctgg caattacctg ctcgcgcggc gtgaagctgc
    27001 tggcggatgc gccgctggtc gaggtggctg atggcgaata tgacgtgatc gtactgcctg
    27061 gtggcattaa aggcgcagag tgttttcgcg atagcactct gctggttgaa accgttaaac
    27121 agttccaccg ttccgggcgt atcgtcgcgg ctatttgcgc cgcgccagcc accgtgctgg
    27181 tgccgcacga tatcttcccg attggtaata tgaccggctt cccgacgctg aaagacaaaa
    27241 ttcccgctga acaatggcag gacaagcgcg tcgtctggga tgcacgggta aaattgctga
    27301 ccagccaggg gccggggaca gctatcgact ttggtctgaa aattatcgac ctgctggttg
    27361 ggcgcgagaa agcccatgaa gtggcatcac aactggtgat ggcggcaggg atttataatt
    27421 attacgagta gtgtcggatg cggtaagcgt cgcatctgac cagatgcgac gttacaacca
    27481 caaattacgg gcgatatacc ttcacattgt taaagccctg ctcgcgcaga tagagcgcct
    27541 gcagacggct catcaccccg cgctcacacc acagtagcca ggttctgttc tggtcgagat
    27601 cgccaaactt ggtgctcagt ttatagaacg gcagagaaac tacatcaatc ccttcgactt
    27661 tcagtggctt atcttcctgt tcatcgatag aacggatatc gaggatcacg tcgttcgggc
    27721 cgaagccatt gacggtttcc acttccacca cttcctgctc ggtctgctgg gcgatttcgc
    27781 ggatatcaac gttattcgct tcttcaacca ctttatcgat aatgctgaag tcgaatttct
    27841 cttcttccgc ttcaatcttc gacttaaccg ctttcaccgt cgggcttttg gagataacac
    27901 cgcaatattc cggcatcgtg cgagcaaagt cttcggtgcc aatctggcga gccaggttga
    27961 tgatgtgctc tttgtcgtaa gaaatcagcg gacgcaggat cagcgtatcg gagacgttat
    28021 caatcaggcg caggttggtc agcgtctgac tggacacctg gccgagcgct tcgccggtga
    28081 ccagcgcctg tacgccgtaa cgttcagcca ctttagacgc ggcacgcacc atcatacgtt
    28141 tgaggataac gcccatctga ccgtcgtcga ttttctcgag aatttccccg acgaccggtt
    28201 cgaaattaat agcgacaaaa cgcacgcggt gggagctgcc aaaacggttc cacagataat
    28261 gcgccacctg acgcacgcca atttcatgcg ccgcgccgcc aaggttaaag aaacagtaat
    28321 gcacgcggca gccgcgacgc atcaacatat aactggaaac accggagtcg aaaccaccgg
    28381 aaatgagcga cagcacatct tcctgggtgc cgatcgggaa accgccaata ccttcgtagc
    28441 ggcctttaat cagcaggaga cgatcgtctt ccacttccag atggacagtc acttccggat
    28501 tggtcagctt cacgcgcgcg gactcaatat gctgatttaa accgccgccg acgtaacgtt
    28561 ccacatcaat cgagctaaaa tcatgtttgc cacggcgctt cacgcgtacg cagaaggttt
    28621 tgccttccag ctgatcgcga tactgaacca acgctttctc aaaaatatcg tgcatgtcgg
    28681 taaacggcac gtcttcgact tcgagaatat ggtggatacc cggaatacgg gtcagggcgt
    28741 cgcgaatagc cagacgctgg ttttcatctt ttgcgcgaac ttcgatgtta tcccagtggc
    28801 ggacgacagc gagcgtctca tcatagtgct ttaaaacgtt acgaatgttc ccggtaagga
    28861 tttttataaa gcgcaagcgc acagattggc ttttgatggt gatttccggg aacaatttaa
    28921 tgataaactt catggcggca atggttcgtt ggcaagcctt aagcgacttg tatagggaaa
    28981 aatacagcag cccacacctg cggctgcatc caggcgcgga agtataccac taacatcgct
    29041 ttgctgcgca catcacctta ccattgcgcg ttatttgcta tttgccctga gtccgttacc
    29101 atgacggggc gaaaaatatt gagagtcaga cattcattat gccgaagaaa aatgaggctc
    29161 ccgccagctt tgaaaaggcg ctgagcgagc tggaacagat tgtaacccgt ctggaaagtg
    29221 gcgacctgcc gctggaagag gcgctgaacg agttcgaacg cggcgtgcag ctggcacgtc
    29281 aggggcaggc caaattacaa caagccgaac agcgcgtaca aattctgctg tctgacaatg
    29341 aagacgcctc tctaacccct tttacaccgg acaatgagta atggactttc cgcagcaact
    29401 cgaagcctgc gttaagcagg ccaaccaggc gctgagccgt tttatcgccc cactgccctt
    29461 tcagaacact cccgtggtcg aaaccatgca gtatggcgca ttattaggtg gtaagcgtct
    29521 gcgacccttc ctggtttatg ccaccggtca tatgtttggc gttagcacaa acacgctgga
    29581 cgcacccgct gccgccgtag agtgtatcca cgcttactca ttaattcatg atgatttacc
    29641 ggcgatggat gatgacgatc tgcgtcgcgg tttgccgacc tgccatgtga agtttggaga
    29701 agcaaacgcg attctcgctg gcgacgcttt acaaacgctg gcgttctcga ttttaagcga
    29761 tgctgatatg ccggaagtgt cggatcgcga cagaatttcg atgatttctg aactggcgag
    29821 cgccagcggt attgccggaa tgtgcggtgg tcaggcatta gatttagacg cggaaggcaa
    29881 acacgtacct ctggacgcgc ttgagcgtat tcatcgtcat aaaaccggcg cattgattcg
    29941 cgccgccgtt cgccttggtg cattaagcgc cggagataaa gggcgtcgtg ctctgccagt
    30001 actcgacaag tacgcagaga gcatcggcct tgccttccag gttcaggatg acatcctgga
    30061 tgtggtagga gatactgcaa cgttgggaaa acgccagggt gccgaccagc aacttggtaa
    30121 aagtacctac cctgcacttc tgggtcttga gcaagcccgg aagaaagccc gggatctgat
    30181 cgacgatgcc cgtcagtcgc tgaaacaact ggctgaacag tcactcgata cctcggcact
    30241 ggaagcgcta gcggactaca tcatccagcg taataaataa acaataagta ttaataggcc
    30301 cctgatgagt tttgatattg ccaaataccc gaccctggca ctggtcgact ccacccagga
    30361 gttacgactg ttgccgaaag agagtttacc gaaactctgc gacgaactgc gccgctattt
    30421 actcgacagc gtgagccgtt ccagcgggca cttcgcctcc gggctgggca cggtcgaact
    30481 gaccgtggcg ctgcactatg tctacaacac cccgtttgac caattgattt gggatgtggg
    30541 gcatcaggct tatccgcata aaattttgac cggacgccgc gacaaaatcg gcaccatccg
    30601 tcagaaaggc ggcctgcacc cgttcccgtg gcgcggcgaa agcgaatatg acgtattaag
    30661 cgtcgggcat tcatcaacct ccatcagtgc cggaattggt attgcggttg ctgccgagaa
    30721 agaaggcaaa aatcgccgta ccgtctgtgt aatcggcgat ggcgcgatta ccgcaggcat
    30781 ggcgtttgaa gcgatgaatc acgcgggcga tatccgtcct gatatgctgg tggtcctcaa
    30841 cgacaacgaa atgtcgattt ccgaaaatgt cggcgcgctc aacaaccatc tggcgcagct
    30901 gctttccggt aagctttact cttcactgcg cgaaggcggg aaaaaagttt tctctggcgt
    30961 gccacccatt aaagagctgc tcaaacgtac cgaagaacat attaaaggca tggtagtccc
    31021 tggcacgttg tttgaagagc tgggctttaa ctacatcggc ccggttgacg gtcacgatgt
    31081 gctggggctt atcaccacgc tgaagaacat gcgtgacctg aaaggcccgc agttcctgca
    31141 tatcatgacc aaaaaaggtc gtggttatga accggcagaa aaagacccaa tcactttcca
    31201 cgccgtgcct aaatttgatc cctccagcgg ttgtttgccg aaaagtagcg gcggtttacc
    31261 gagctattca aaaatctttg gcgactggtt gtgcgaaacg gcggcgaaag ataacaagct
    31321 gatggcgatt actccggcga tgcgtgaagg ttccggcatg gtcgagtttt ctcgtaaatt
    31381 cccggatcgc tacttcgacg tggcaattgc cgagcaacac gcagtgacct ttgccgccgg
    31441 tctggcgatt ggtgggtaca aacccattgt cgcgatctac tccactttcc tgcaacgcgc
    31501 ctatgatcag gtgctgcatg acgtggcaat tcaaaagctt ccggtcctgt tcgccatcga
    31561 ccgcgcgggc attgttggtg ctgacggtca aacccatcag ggtgcttttg atctctctta
    31621 cctgcgctgc ataccggaaa tggtcattat gaccccgagc gatgaaaacg aatgtcgcca
    31681 gatgctctat accggctatc actataacga tggcccgtca gcggtgcgct acccgcgtgg
    31741 caacgcggtc ggcgtggaac tgacgccgct ggaaaaacta ccaattggca aaggcattgt
    31801 gaagcgtcgt ggcgagaaac tggcgatcct taactttggt acgctgatgc cagaagcggc
    31861 gaaagtcgcc gaatcgctga acgccacgct ggtcgatatg cgttttgtga aaccgcttga
    31921 tgaagcgtta attctggaaa tggccgccag tcatgaagca ctggttaccg tagaagaaaa
    31981 cgccattatg ggcggtgcag gcagcggagt gaacgaagtg ctaatggccc atcgtaaacc
    32041 agtccccgtg ctgaacattg gcctgcctga cttctttatt ccgcaaggaa cgcaggaaga
    32101 aatgcgcgcc gaactcggcc tcgatgccgc cggtatggaa gccaaaatca aggcctggct
    32161 ggcataatcc ctactccact cctgctatgc ttaagaaatt attcatggca ggagtggcag
    32221 catgcaatac aaccccttag gaaaaaccga ccttcgcgtt tcccgacttt gcctcggctg
    32281 tatgaccttt ggcgagccag atcgtggtaa tcacgcatgg acactgccgg aagagagcag
    32341 ccgtcccata attaaacgcg cactggaagg cggcataaat ttctttgata ccgccaatag
    32401 ctattccgat ggtagcagcg aagagatcgt tggtcgcgca ctgcgggatt tcgcccgtcg
    32461 tgaagacgtg gtcgttgcca ccaaagtgtt ccatcgcgtt ggtgatttac cggaaggatt
    32521 atcccgtgca caaattttgc gctctatcga cgacagcctg cgacgtctcg gcatggatta
    32581 tgtcgatatc ctgcaaattc atcgctggga ttacaacacg ccgatcgaag agacgctgga
    32641 agccctgaac gacgtggtaa aagccgggaa agcgcgttat atcggcgcgt catcaatgca
    32701 cgcttcgcag tttgctcagg cactggaact ccaaaaacag cacggctggg cgcagtttgt
    32761 cagtatgcag gatcactaca atctgattta tcgcgaagaa gagcgcgaga tgctgccact
    32821 gtgttatcag gagggcgtgg cggtgattcc gtggagcccg ctggcgcggg ggcgactgac
    32881 gcgtccgtgg ggagaaacta ccgcacgact ggtgtctgat gaggtgggga aaaatctcta
    32941 taaagaaagc gatgaaaatg acgcgcagat cgcagagcgg ttaacgggcg tcagtgaaga
    33001 actcggtgca acacgagcac aagttgcgct ggcttggttg ttgagtaaac cgggcattgc
    33061 cgcaccgatt atcggtacat cgcgggaaga acagcttgat gagctattga acgcggtgga
    33121 tatcactttg aagccggaac agattgccga actggaaacg ccgtataaac cgcatccggt
    33181 agtaggattt aaataagagt ccaggcctga tgagacgcaa caagcgtcac atcaggcatc
    33241 ggtgcacaac tacgacagaa tgcccagcgg ccagtgatga ccaataaagt acaggatgcc
    33301 agcggagatc accccggcga caatatcatc tatcatgatc cccatgccgc catgcacatt
    33361 gcgatcaaac cagcggatcg gccacggttt ccacatatcc agaatacgga aaatcacaaa
    33421 cccggcggca acccactgcc agtcattggt cggcagcgcc atgagcgtga tccacatacc
    33481 aataaattcg tcccaaacaa tgctgccgtg atcgtgcacg cccatatctt ttgcggtctg
    33541 atgacaaaga tagacgccga tacagatccc cagcatcacc accagcgagt agagctgcca
    33601 gggcaaaaag gtcatcagat accagaacgg aatcgctgcc agcgagccca tcgtcccagg
    33661 aacgatcggg cttaatccac ttccgaatcc gacagcaagt agatgccacg gattactcat
    33721 cttcaggcga cttttcgcga catctttatg gcgtggcaaa atggtcatat cctttccagt
    33781 ctaacgtaac aggttcaccg tcacgaataa aacaaagccc ttcgatatcg gcggtcattt
    33841 gcccgataca ggtaaacggt acgcccaggt gtccgagagc cacatccagc gctccacggt
    33901 tcagttccgg caccgtgaaa cacaactcgt aatcttcacc gccagagagc gcccagcgca
    33961 gcgcctgttc cggttcaaca tggcgagaaa gcgcatcaga aaacggcagc aatgccaggt
    34021 caatacgtgc gccgcagtcg ctggctttca cgatatgccc gagatcggaa atcagaccgt
    34081 cagagagatc gatagctgaa tttgctagat cgcgcagtgc ctgcccctgt aaaatacgcg
    34141 gcgatggacg gagatgacgt ttgatcaagt agtccgcatc tttagcatcg gcaacctgca
    34201 aacggttttg caaaatcgcc agcccggcgg cgctatcgcc cggtgtaccg gtcacataga
    34261 tccagtcacc cggtttcgcc ccagagcgcg ttaaggctcg tcccatcgga acaaagccgt
    34321 ggatacccaa cgtcattgat aatggcccac gcgtggtatc gccgccaatg agttgcatat
    34381 cgtaataatt gagaagatca aacaaactgt cgctgaagga ctcaagccac gcttcgtcta
    34441 cgtccggcaa ggttaatgcc agcgtcagcc aggccggatc ggcccccatc gctgccagat
    34501 cgcttaggtt caccgccagt gctttatacg ccagatcagc aggatcgata tcagggagga
    34561 agtggttgcc cgccaccagc gtatcagtgc tgatcgccag ggtctgtttc tcggggatat
    34621 tgagaagtgc gcaatcgtcg ccgatgccca gttcgacatc aagacgagaa cttcttacac
    34681 ggtcaaaata acgggcaatc agggagaact cgccacatgc catacgttat gcctcagcag
    34741 gtaaaaaaga aaaggccggc gatcatggaa cggtcttccg tgaatctacc ggcctggata
    34801 ttactttttg ttagggcgaa tcacaggtgc tgctttatcg agtacaccgt tgacgaactt
    34861 atggctgtct tctgcgccga acgatttcgc cagttcgatc gcttcgttaa tggccacttt
    34921 gtatggcaca tcgctacgtt tagacagttc gtacagcgca atgcgcagta ctgctttttc
    34981 tacctgtccc agttcttcca gcagacggga caggtatggc ttcatcagtc cgtcgaggta
    35041 tgcggtatta gtcgccaccc cggccagcag ctcacggaag tacaggacgt caacgtcttt
    35101 tacatcctgt tcagccagga actggtattc aacatcagcg atgtcgttct gggacaactg
    35161 ccaggagtag agcgcctgga cggcacactc acgagcgcgg cgacgagcag caggtttcac
    35221 ggatttcccc ttactaattt caggccttga tggctttcaa tacattaatc atttcaagcg
    35281 cggtcagtgc agcttctgca cctttgttgc cagctttggt gccagcacgt tcgatcgctt
    35341 gttcaatgct ttcagtggtc agaaccccaa aagcaaccgg aatttcgctg tcctgggcaa
    35401 catgcgccag gccgttgctt gcaccaccag cgacatattc aaaatgggca gtgccaccac
    35461 gaataaccgt acccagcgca atcaccgcgt cgtatttacc ggttttagcc agtgcacccg
    35521 ccgccagcgg cagctcatag gcaccaggca cccaaacaac ggtaatgttt tcatctttta
    35581 cctgaccgat acgtttcagt gcgtcaattg caccttccag caggctgtca ttgataaagt
    35641 tgttgaaacg cgcgatggtg atggcgacgc gagcgtccgg ggtagcaacg ttagcttcaa
    35701 taatgttcat tttcttcctt cgggttcgag tatggccccg caggggggcg gattttagca
    35761 taatatttcg tgcgctgctt ccctttcgag ccgggagatc atgcacccac taaatgcagg
    35821 caaacatccg ggcctacatg acgtatctct ttgaatttaa attggggggc gtcggctaat
    35881 ttctcaagcc ctggcagggt gcataatcca cgggcgtcgc tgcctaatag tttaggtgcg
    35941 atatagacaa tcagctcatc gactaaaccc gcctgcagca atgcgccagc gagcgttggc
    36001 cccgcttcca cccagatgct gttaatctgc tgtttaccca gttgcatcat cagtacaacc
    36061 agatccagat gacctttatg ctctggaatc agcaaggtac gcaccgtttc cggccactca
    36121 cgagaatctt cctgcgtacg cgcgaaccag gtttcgccgg gctgctgcac aatgtgatgt
    36181 tccggcgtca cgcgattttg gctatcaatc acaatacgta ccggctggcg gagattttgt
    36241 tgcgggtaga gcgcctgagt ttgttcatcc agttcggacc aacgcaccgt taaggcagga
    36301 tcatccgcca gcaccgtggc gctgctggtt aaaatggcat gactttgcgc gcgcagtcgt
    36361 tgtacatcac gccgcgcctg gggcgaagtg atccactggc tttcgccgct cgccatcgcc
    36421 gtgcgaccat caagcgatgc gccaagtttt aactgaatat aaggaaagcc ggtgcgcatc
    36481 cgcttgagaa agcctttatt caattgctcg gcttcactca tcatcaggcc gtggctgacg
    36541 tcaatgccag cctgttgcag acggtaaagt ccacgcccag cgacctgcgg gttaggatct
    36601 tgcatcgagg caaccacgcg cgccacacct gcggcaatta aagcatcaca gcaaggcggc
    36661 gtacggccgt gatggctgca aggttcgagt gtcacatacg ccgttgcacc tttggctttt
    36721 tcacccgcca tacgcaacgc gtgtacttcg gcatgtggtt cacccgctcg ttgatggtaa
    36781 ccttcaccga caatttcgcc atctttgaca atgacgcacc cgacatttgg gttggggtgg
    36841 gtggtaaaac gtcctcgttg cgccagcttt agcgcccgcg ccatgtaata ctcgtcctgc
    36901 acggcttagt cctccaggcg cgcgatctct tcgccaaatt ctttgatatc ttcgaaactg
    36961 cggtagacag aggcaaaacg gatataggcg actttatcga gctttttcaa ttgctccatc
    37021 accagattgc caatcatctt gctcggtact tcgcgctcac cggtggcgcg cagctgcgat
    37081 ttaatatgat tgattgccat ttcaacgtca tcggaactca ccggacgttt ttccagcgcc
    37141 cgcagcattc cgctacgcaa tttctcttca ttaaacggtt cacgcacgtc gttgcttttt
    37201 acaacacgcg gcataaccag ctccgccact tcaaaggtgg tgaaacgttc attacacacc
    37261 agacactgcc gacggcggcg tacggatgaa cccccgccca cgagacgaga gtcaattacc
    37321 ttagtgtcca cggcgaaaca gaatgggcaa tgcatacggc gtcctgacca ggtggttaac
    37381 ggaaatctat tttaccctga actgacgata caacaaaggc gcaacgcttt tgagataaag
    37441 gatcgatgct ttcgctgctt ttaccctcta ccattaggct aattgcgacg agaaagggac
    37501 gacctatgaa tactaacgtt tttcgactgc tcctgctggg aagcctgttc agccttagcg
    37561 cctgtgtgca gcaaagtgaa gtgcgacaga tgaaacacag cgtcagcacg ctgaaccagg
    37621 agatgacgca actcaatcaa gaaacagtca aaatcactca gcaaaacagg ctgaatgcaa
    37681 aatccagcag tgggggttac cttctgcctg gagcgaaaac accggcaaga ctggaaagcc
    37741 agatcggtac tttacgtatg tcgctggtga atattacgcc tgatacagat ggcaccaccc
    37801 ttacactacg tattcagggt gagtcgaatg atcccttgcc cgcattcagc ggaactgttg
    37861 aatatgggca aattcaggga acaatagaca actttcagga aatcaatgtg cagaatcaat
    37921 tgattaatgc ccctgccagc gtcctcgccc ccagcgatgt tgatattccg ttacaattaa
    37981 aggggatttc tgtggatcag ttaggctttg tacgtatcca cgacattcaa cctgttatgc
    38041 agtaaacgta tttcgggacg attttgtgcg tcccgcaaca tctttccccg tcattttgtt
    38101 actctgctta catcacctgg attgatagta aaagtttgca acaagggcga aagtcagtac
    38161 aatccccgcc cgaatgtgtg taaacgtgaa cgcaatcgat tacgtaaatg atagaactgt
    38221 gaaacgaaac atatttttgt gagcaatgat ttttataata ggctcctctg tatacgaaat
    38281 atttagaaac gcaatttgcg cctttttcac tcccgcaagg gattttcaaa cagtggcata
    38341 catatgaaaa aaacattact ggcagccggt gcggtactgg cgctctcttc gtcttttact
    38401 gtcaacgcag ctgaaaacga caaaccgcag tatctttccg actggtggca ccagagcgtt
    38461 aacgttgtcg gaagctatca cacccgtttc ggaccgcaga tccgcaacga tacctacctt
    38521 gagtacgaag cattcgctaa aaaagactgg ttcgacttct atggttatgc ggatgcgccg
    38581 gtattcttcg gcggtaactc cgatgctaaa ggtatctgga accacggttc tccgctgttt
    38641 atggaaatcg aaccacgttt ctccatcgac aagctgacca atactgacct taacttcggt
    38701 ccgttcaaag agtggtactt cgcgaacaac tacatttacg acatgggtcg taataaaaat
    38761 ggtcgccaga gcacctggta catgggtctg ggtaccgaca tcgatactgg tctgccgatg
    38821 agcctgtcca tgaacgtcta tgcgaaatac cagtggcaga actatggcgc agcgaacgaa
    38881 aacgagtggg acggttaccg tttcaaaatt aaatactttg tgccgattac cgatctgtgg
    38941 ggcggtcagc tgagctacat cggcttcacc aacttcgact ggggttccga tttaggggat
    39001 gacagcggta acgcaatcaa cggtattaag acccgtacta ataactctat cgcttccagc
    39061 catattctgg ctctgaacta cgatcactgg cactactctg tcgtagctcg ttactggcac
    39121 gacggtggtc agtggaacga cgatgcagaa ctgaacttcg gcaacggcaa cttcaacgtt
    39181 cgctctaccg gctggggtgg ttacctggta gtaggttaca acttctgatt atgaaaatgc
    39241 cgggatttat tcccggcatt tctgattgtt aacaacgtga gctttgttca tgccggatgc
    39301 ggcgtaaacg ctttgtccgg cccacaaaag cacgtaaatt caatatattg ctgaaataac
    39361 gtaggcctga t
//
LOCUS       DAJVUN010000009        39135 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.009, whole genome shotgun sequence.
ACCESSION   DAJVUN010000009 DAJVUN010000000
VERSION     DAJVUN010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39135
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.009"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            132..341
                     /locus_tag="OQQ76_000385"
     CDS             132..341
                     /locus_tag="OQQ76_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1966994.1"
                     /translation="MTNTTLVKYGKLGYIVPRPQKIRGRWLIDRRAVFVGPGETGIAP
                     EIHTGDDDALKEILTHVTEATKKQH"
     gene            310..1428
                     /locus_tag="OQQ76_000386"
     CDS             310..1428
                     /locus_tag="OQQ76_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase Arm DNA-binding
                     domain-containing protein"
                     /protein_id="HCS1966995.1"
                     /translation="MSPRPQKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTD
                     KGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKN
                     GDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLW
                     VDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRARLTMEDWQKIYNATPEKHFIRNAML
                     LAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGC
                     RDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAGKTPPTFHEQRSLSE
                     RLYRAQGIDTKTLLGHKVQATTDRYNDTRGQEWVKLVI"
     gene            1595..2389
                     /gene="potC"
                     /locus_tag="OQQ76_000387"
     CDS             1595..2389
                     /gene="potC"
                     /locus_tag="OQQ76_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HCS1966996.1"
                     /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT
                     KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV
                     VMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE
                     AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI
                     YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNTGDVK"
     gene            2386..3432
                     /gene="potD"
                     /locus_tag="OQQ76_000388"
     CDS             2386..3432
                     /gene="potD"
                     /locus_tag="OQQ76_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotD"
                     /protein_id="HCS1966997.1"
                     /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE
                     QFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS
                     KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWAYLWKPEYK
                     GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY
                     MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN
                     FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS
                     SIYEEYYQKLKAGR"
     gene            complement(3588..4409)
                     /gene="cobB"
                     /locus_tag="OQQ76_000389"
     CDS             complement(3588..4409)
                     /gene="cobB"
                     /locus_tag="OQQ76_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HCS1966998.1"
                     /translation="MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVL
                     VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP
                     KIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ
                     VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH
                     VYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL"
     gene            complement(4425..5336)
                     /gene="nagK"
                     /locus_tag="OQQ76_000390"
                     /pseudo
     CDS             complement(4425..5336)
                     /gene="nagK"
                     /locus_tag="OQQ76_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415637.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
     gene            complement(5365..6609)
                     /gene="lolE"
                     /locus_tag="OQQ76_000391"
     CDS             complement(5365..6609)
                     /gene="lolE"
                     /locus_tag="OQQ76_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HCS1966999.1"
                     /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG
                     LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTG
                     LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
                     KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG
                     SSVSGIALKMTDVFNANKLVRDAGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM
                     VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG
                     LIIGVVVSLQLTPIIERIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL
                     LASWYPARRASNIDPARVLSGQ"
     gene            complement(6609..7310)
                     /gene="lolD"
                     /locus_tag="OQQ76_000392"
     CDS             complement(6609..7310)
                     /gene="lolD"
                     /locus_tag="OQQ76_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309522.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HCS1967000.1"
                     /translation="MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSS
                     GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF
                     TALENVAMPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL
                     VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM
                     RDGRLTAELSLMGAE"
     gene            complement(7303..8502)
                     /gene="lolC"
                     /locus_tag="OQQ76_000393"
     CDS             complement(7303..8502)
                     /gene="lolC"
                     /locus_tag="OQQ76_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004976588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolC"
                     /protein_id="HCS1967001.1"
                     /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV
                     LSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVV
                     LQSARSVAVGVMLGIDPAQEDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
                     QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGN
                     ITGWRLWLDEPLKVDSLSQQKLPEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA
                     VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGASAGIIGAILGAALGA
                     LLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP
                     AEALRYE"
     gene            8764..9837
                     /locus_tag="OQQ76_000394"
     CDS             8764..9837
                     /locus_tag="OQQ76_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HCS1967002.1"
                     /translation="MKQKELWINQIKGLCICPVVIYHSVITFYPHMTTFQHPLSEVLS
                     KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW
                     LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF
                     SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR
                     RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN
                     TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL
                     SQRAFSDLLFSPPSLPAAVSYSR"
     gene            9965..13411
                     /gene="mfd"
                     /locus_tag="OQQ76_000395"
     CDS             9965..13411
                     /gene="mfd"
                     /locus_tag="OQQ76_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HCS1967003.1"
                     /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
                     IAPDMQNALRLHDEISQFTDQMVMNLGDWETLPYDSFSPHQDIISSRLSTLYQLPTMQ
                     RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSLDALRTQLDSAGYRYVDQVMEHG
                     EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP
                     TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
                     PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW
                     PRVQLKTKHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE
                     GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
                     GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY
                     LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA
                     ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR
                     LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM
                     ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE
                     RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV
                     REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND
                     FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL
                     LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF
                     SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI
                     ASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE
                     FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA
                     IA"
     gene            13555..14517
                     /gene="ldtC"
                     /locus_tag="OQQ76_000396"
     CDS             13555..14517
                     /gene="ldtC"
                     /locus_tag="OQQ76_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtC"
                     /protein_id="HCS1967004.1"
                     /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGEN
                     KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE
                     GIVINIAELRLYYYPTGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
                     TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI
                     RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI
                     TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL"
     gene            complement(14600..14857)
                     /gene="bhsA"
                     /locus_tag="OQQ76_000397"
     CDS             complement(14600..14857)
                     /gene="bhsA"
                     /locus_tag="OQQ76_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple stress resistance protein BhsA"
                     /protein_id="HCS1967005.1"
                     /translation="MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISAKAG
                     TNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK"
     gene            15098..15730
                     /gene="comR"
                     /locus_tag="OQQ76_000398"
     CDS             15098..15730
                     /gene="comR"
                     /locus_tag="OQQ76_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family copper-responsive transcriptional
                     repressor ComR"
                     /protein_id="HCS1967006.1"
                     /translation="MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLAD
                     LVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFA
                     AIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGE
                     IPTHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK"
     gene            complement(15792..16331)
                     /locus_tag="OQQ76_000399"
     CDS             complement(15792..16331)
                     /locus_tag="OQQ76_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HCS1967007.1"
                     /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK
                     ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA
                     LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD
                     PGTQIPLDSNGQLILNNKV"
     gene            complement(16558..17862)
                     /gene="ndh"
                     /locus_tag="OQQ76_000400"
     CDS             complement(16558..17862)
                     /gene="ndh"
                     /locus_tag="OQQ76_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017384716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone dehydrogenase"
                     /protein_id="HCS1967008.1"
                     /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS
                     HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE
                     KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK
                     YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGE
                     RILPALPPRISAAAHSELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI
                     KAPDFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCTRPEGGFVPPRAQAA
                     HQMATCAMNNILAQINGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI
                     ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH"
     gene            complement(18262..18804)
                     /locus_tag="OQQ76_000401"
     CDS             complement(18262..18804)
                     /locus_tag="OQQ76_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1967009.1"
                     /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ
                     HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI
                     DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT
                     HKFKNISPHLQRIKAFKTLG"
     gene            complement(18827..19852)
                     /gene="nagZ"
                     /locus_tag="OQQ76_000402"
     CDS             complement(18827..19852)
                     /gene="nagZ"
                     /locus_tag="OQQ76_000402"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HCS1967010.1"
                     /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE
                     LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALLGMEEGGKLAQEAGW
                     LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPEKALAIASRFIDGMHEAGMKT
                     TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSTLIRENKLDAIMPAHVIYSD
                     VDPRPASGSSYWLKTVLRQELCFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI
                     LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKASSTRLNQLHERW
                     QEEKAGH"
     gene            complement(19863..20687)
                     /gene="thiK"
                     /locus_tag="OQQ76_000403"
     CDS             complement(19863..20687)
                     /gene="thiK"
                     /locus_tag="OQQ76_000403"
                     /EC_number="2.7.1.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine kinase"
                     /protein_id="HCS1967011.1"
                     /translation="MPFRSNNPITRDELLSRFFPQFHPVTTFNSGLSGGSFLIEHQGQ
                     RFVVRQPHDPDAPQSAFLRQYRALSQLPASIAPKPHLYLRDWMVVDYLPGAVKTYLPD
                     TNELAGLLYYLHQQPRFGWRIMLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP
                     LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDTALELAAVWVENTEQHRQLVNDYA
                     TRAKIYPAQLWRQVRRWFPWLLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ"
     gene            complement(20671..21309)
                     /gene="lpoB"
                     /locus_tag="OQQ76_000404"
     CDS             complement(20671..21309)
                     /gene="lpoB"
                     /locus_tag="OQQ76_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HCS1967012.1"
                     /translation="MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQ
                     PVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSV
                     LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
                     RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ"
     gene            complement(21323..21700)
                     /locus_tag="OQQ76_000405"
     CDS             complement(21323..21700)
                     /locus_tag="OQQ76_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HCS1967013.1"
                     /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI
                     SAEKPVLSTSDIQPSASSTLYNERQKPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH
                     SAVTLYGSANFLGAHKVRLYLYL"
     gene            complement(21703..22062)
                     /gene="hinT"
                     /locus_tag="OQQ76_000406"
     CDS             complement(21703..22062)
                     /gene="hinT"
                     /locus_tag="OQQ76_000406"
                     /EC_number="3.9.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415621.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine nucleoside phosphoramidase"
                     /protein_id="HCS1967014.1"
                     /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP
                     NILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM
                     HLLGGRPLGPMLAHKGL"
     gene            22396..24585
                     /gene="fhuE"
                     /locus_tag="OQQ76_000407"
     CDS             22396..24585
                     /gene="fhuE"
                     /locus_tag="OQQ76_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric-rhodotorulic acid/ferric-coprogen
                     receptor FhuE"
                     /protein_id="HCS1967015.1"
                     /translation="MLSTQFNRDNQYQAITKPSLLAGCIALALLPSAAFAAPATEETV
                     IVEGSATAPDDGENDYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVM
                     ENTLGISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEV
                     VRGATGLMTGTGNPSAAIDMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDG
                     KIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWG
                     GLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQRFADTWQATLNATHSEVE
                     FDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYEL
                     FGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTT
                     HMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWST
                     YASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNVAQ
                     STGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVN
                     PNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLF
                     TRYQVTKNFSLQGNVNNLFDKTYDTNMEGSIVYGAPRNFSITGTYQF"
     gene            complement(24645..26078)
                     /gene="ptsG"
                     /locus_tag="OQQ76_000408"
     CDS             complement(24645..26078)
                     /gene="ptsG"
                     /locus_tag="OQQ76_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIBC"
                     /protein_id="HCS1967016.1"
                     /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV
                     SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH
                     LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA
                     AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF
                     QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN
                     RAKVGGIMISAALTSFLTGITEPIEFFFMFVAPILYIIHAILAGLAFPICILLGMRDG
                     TSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED
                     AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV
                     AGSGVQAIFGTKSDNLKTEMDEYIRNH"
     gene            complement(26373..27170)
                     /locus_tag="OQQ76_000409"
     CDS             complement(26373..27170)
                     /locus_tag="OQQ76_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1967017.1"
                     /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL
                     TGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYT
                     PETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED
                     RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE
                     NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR"
     gene            complement(27181..28185)
                     /gene="holB"
                     /locus_tag="OQQ76_000410"
     CDS             complement(27181..28185)
                     /gene="holB"
                     /locus_tag="OQQ76_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HCS1967018.1"
                     /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL
                     SRYLLCQQLQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNE
                     HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR
                     LHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQ
                     ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE
                     LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
                     "
     gene            complement(28182..28823)
                     /locus_tag="OQQ76_000411"
     CDS             complement(28182..28823)
                     /locus_tag="OQQ76_000411"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HCS1967019.1"
                     /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT
                     QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD
                     LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE
                     QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA"
     gene            complement(28813..29835)
                     /gene="yceG"
                     /locus_tag="OQQ76_000412"
     CDS             complement(28813..29835)
                     /gene="yceG"
                     /locus_tag="OQQ76_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YceG"
                     /protein_id="HCS1967020.1"
                     /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL
                     KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL
                     ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGW
                     FWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE
                     TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI
                     TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL
                     KEKNAQ"
     gene            complement(29838..30647)
                     /gene="pabC"
                     /locus_tag="OQQ76_000413"
     CDS             complement(29838..30647)
                     /gene="pabC"
                     /locus_tag="OQQ76_000413"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HCS1967021.1"
                     /translation="MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQ
                     RLQDACQRLMIFCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR
                     ILSITVYPAHYDRLRNEGMTLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD
                     EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE
                     VQASLEEALQADEMVICNALMPVMPVRACGDVSFSSATLYEYLAPLCERPN"
     gene            complement(30767..32008)
                     /gene="fabF"
                     /locus_tag="OQQ76_000414"
     CDS             complement(30767..32008)
                     /gene="fabF"
                     /locus_tag="OQQ76_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HCS1967022.1"
                     /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS
                     AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG
                     AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI
                     ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA
                     ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN
                     GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKAIFGEAASRVLVSS
                     TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNLDEGCDLDFVPHEARQVSGME
                     YTLCNSFGFGGTNGSLIFKKI"
     gene            complement(32096..32332)
                     /gene="acpP"
                     /locus_tag="OQQ76_000415"
     CDS             complement(32096..32332)
                     /gene="acpP"
                     /locus_tag="OQQ76_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1967023.1"
                     /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV
                     MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA"
     gene            complement(32543..33277)
                     /gene="fabG"
                     /locus_tag="OQQ76_000416"
     CDS             complement(32543..33277)
                     /gene="fabG"
                     /locus_tag="OQQ76_000416"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HCS1967024.1"
                     /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA
                     ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE
                     WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG
                     FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA
                     VAFLASDEAAYITGETLHVNGGMYMV"
     gene            complement(33290..34219)
                     /gene="fabD"
                     /locus_tag="OQQ76_000417"
     CDS             complement(33290..34219)
                     /gene="fabD"
                     /locus_tag="OQQ76_000417"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HCS1967025.1"
                     /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL
                     WALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA
                     GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVN
                     FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK
                     ITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG
                     PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL"
     gene            complement(34235..35188)
                     /gene="fabH"
                     /locus_tag="OQQ76_000418"
     CDS             complement(34235..35188)
                     /gene="fabH"
                     /locus_tag="OQQ76_000418"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HCS1967026.1"
                     /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI
                     AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG
                     CPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG
                     AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT
                     ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS
                     AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF"
     gene            complement(35256..36326)
                     /gene="plsX"
                     /locus_tag="OQQ76_000419"
     CDS             complement(35256..36326)
                     /gene="plsX"
                     /locus_tag="OQQ76_000419"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415608.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HCS1967027.1"
                     /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDA
                     ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRMTLELVKEGRAQAC
                     VSAGNTGALMGLAKLLLKPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ
                     FAIMGSVLAEEVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEAN
                     ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS
                     LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA
                     RLESVYPAGFELLDGGKSGTLR"
     gene            complement(36407..36580)
                     /gene="rpmF"
                     /locus_tag="OQQ76_000420"
     CDS             complement(36407..36580)
                     /gene="rpmF"
                     /locus_tag="OQQ76_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HCS1967028.1"
                     /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT
                     ADGYYRGRKVIAK"
     gene            complement(36632..37153)
                     /gene="yceD"
                     /locus_tag="OQQ76_000421"
     CDS             complement(36632..37153)
                     /gene="yceD"
                     /locus_tag="OQQ76_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HCS1967029.1"
                     /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD
                     VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL
                     PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEVQK
                     PNPFAVLASLKRK"
     gene            37352..37936
                     /gene="yceF"
                     /locus_tag="OQQ76_000422"
     CDS             37352..37936
                     /gene="yceF"
                     /locus_tag="OQQ76_000422"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-methyl-GTP pyrophosphatase"
                     /protein_id="HCS1967030.1"
                     /translation="MPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQL
                     VLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTF
                     YTGLALFNSANGYLQTEVEPFDVHFRHLSEAEIDNYVRKEHPLHCAGSFKSEGFGITL
                     FERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG"
     gene            complement(38048..39007)
                     /gene="rluC"
                     /locus_tag="OQQ76_000423"
     CDS             complement(38048..39007)
                     /gene="rluC"
                     /locus_tag="OQQ76_000423"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HCS1967031.1"
                     /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK
                     GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREDEAVSPHLQKVAALADVILYEDDHI
                     LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL
                     RSLHEQLREKGMQKDYLALVRSQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET
                     RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG
                     LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR"
BASE COUNT         9741 a        10431 c         9595 g         9368 t
ORIGIN      
        1 gcggagcagg aaggacatct gatggaaatg gaaaccacgc aagcacctta aaatcaccat
       61 catacactaa atcagtaagt tggcagcatt acccgctcga cgagtggaaa ccaaaacggt
      121 tcagtctccc aataacaaac actaccctgg tgaaatacgg aaaactagga tacatcgttc
      181 caagaccaca aaaaattcgt gggcgttggc tgatagatcg ccgagcagta tttgttgggc
      241 ctggtgaaac gggaattgcg ccggaaattc atactggcga tgatgatgca ctgaaggaga
      301 ttttaactca tgtcaccgag gccacaaaaa aacagcactg acgtagccgg tctttacgaa
      361 aagtttgatc gcagaactgg cagagtttac taccagtata aaaatcctgt gactggaaaa
      421 tttcacggac tcggaacaga caaaggtaag gcagaaaaaa tcgcttccac agccaatcag
      481 cgaatagctg cagcagaagc tgaatatttc atgcgcaaaa ttgatgaaag tccgtcagca
      541 acaaaacgtc ggggtatcag attaaaggca tgggttgatc gatatctgaa aatacaggac
      601 acgcgactga aaaatggaga tattgcagct acaactcaca aagaaaaaac tcgaatggct
      661 gcatacctgg tttcccgtct gggaaaccac ccattgaaag aactggaagt aagagacttt
      721 gcattaatac tggatgagtg gctggataaa gacatggtca gcacagcgag agtaaatcgt
      781 ggattatggg ttgatattta taaagaagca cagcatgcag gggaagttcc tcctggatgg
      841 aatcctccgg aggctacccg taaaccgatc cctaaagtaa ccagagccag gctcaccatg
      901 gaagactggc aaaaaattta caatgcaacg cctgaaaaac actttatccg taacgcaatg
      961 cttcttgcga ttgttactgg tcagcgccgt gatgacattt gccacatgcg tttttcagat
     1021 gtgtggaacg aacacttgca tatcacccag ggaaaaaccg gaatgcgtct ggcgttaccg
     1081 cttacgctac gctgtgatgc cattgggata acgttaaaag aagttattga tgggtgccga
     1141 gacagaatat taagtccata tctaatccat agtcggcacc agaaacaacc gaagccgatg
     1201 agtaaagaca acctgagcga ctactttgcc aaagcacggg atctggctgg gataattcca
     1261 ccagcaggaa aaactccgcc aacatttcat gaacaacgct ctctatcaga acggctgtac
     1321 cgtgcacagg gtatcgatac aaaaacatta ctaggacata aagtccaggc aaccaccgat
     1381 cgctataacg atactcgagg tcaggaatgg gttaagctgg ttatttgaca aacaccatat
     1441 ggaatatccg tcaccatctc aggaaaaaag tgttgtaaaa tgcgtggcct agttttgggg
     1501 aaacgttttg gagagatttt ggagaaagga aaaaattgaa taaattcaaa atcctgaaag
     1561 tgctccacct tatgaataag aaggtggaac tcgaatgatc ggtcgactgc ttcgcggcgg
     1621 ttttatgacc gctatctacg cgtacctgta tatcccaatc attattttga ttgtgaactc
     1681 ctttaacagc tcgcgctttg gcatcaactg gcagggtttt accaccaaat ggtatagcct
     1741 gctgatgaac aacgacagcc tgttacaggc agcgcagcat tcactaacaa tggcggtgtt
     1801 ttcggcgacg tttgctacgc ttatcggttc actgacggca gttgcgctgt accgttatcg
     1861 ctttcgcggt aagccgttcg ttagcggaat gctgtttgtg gtaatgatgt caccagatat
     1921 cgtgatggca atttcgctgc tggtgctgtt tatgctgctg ggtattcagc ttggcttctg
     1981 gtcgctgctg ttctcgcata tcaccttctg cctgccattt gtggtggtga cggtgtattc
     2041 gcgcctgaaa ggttttgacg tgcggatgct ggaagcggcg aaagatctcg gtgccagcga
     2101 atttaccatt ctgcgaaaaa tcatactgcc actggcaatg ccagcggtgg cagcgggctg
     2161 ggtgttaagc tttaccctgt cgatggacga tgtggtagtt tcttcgttcg tcaccggacc
     2221 aagttatgaa attctgccgt taaaaattta ttcgatggtc aaagtcggcg tatcgccgga
     2281 agttaacgcg ctggcaacca tattactggt gctgtcgctg gtgatggtta ttgccagtca
     2341 gcttattgct cgtgataaaa cgaaaggtaa cacaggggac gttaaatgaa aaaatggtca
     2401 cgccacctgc tcgcggcggg tgctctggca ctgggcatga gcgccgctca cgccgatgac
     2461 aacaacacgc tgtatttcta caactggacc gagtacgtgc cgccaggact gcttgaacag
     2521 ttcaccaaag aaaccggtat taaggttatc tattcgactt acgagtcgaa cgaaaccatg
     2581 tacgccaagc tgaaaacgta caaagacggt gcgtatgacc tggtggttcc ttcaacctat
     2641 tacgtcgata aaatgcgtaa agaagggatg atccagaaga tcgacaagtc gaagttaacg
     2701 aacttcagca atctcgatcc agacatgctc aacaagcctt ttgacccgaa taacgactac
     2761 tccattccgt atatctgggg ggcgacggcg attggtgtta acggtgatgc ggtggatccg
     2821 aaatctgtca ccagctgggc ctatctgtgg aagccagagt acaaaggcag cctgctgttg
     2881 accgacgatg cccgtgaagt gttccagatg gcgctgcgta agctgggcta ttccggtaac
     2941 accaccgatc cgaaagagat tgaagctgca tataacgagc tgaaaaaact gatgccaaac
     3001 gtcgcagcgt ttaactccga taacccggct aacccgtaca tggaaggcga agttaacctc
     3061 ggcatgatct ggaacggttc tgctttcgtt gcacgccagg cgggtacgcc tattgacgtg
     3121 gtgtggccga aagaaggcgg catattctgg atggacagcc tggcgatccc ggcaaatgcc
     3181 aaaaacaaag aaggcgcgct gaaattgatc aacttcctgc tgcgcccgga tgtggcaaaa
     3241 caggttgctg aaactatcgg ttatccaacg ccaaaccttg cggcgcgtaa gctgttaagt
     3301 ccagaagtgg cgaacgataa aacgctctac ccggatgctg aaaccattaa aaatggcgaa
     3361 tggcagaatg acgttggcgc agccagcagc atttatgaag agtattatca gaagctgaaa
     3421 gcaggacgtt aattcagcaa gcgggcggtg gtattaccgc ccgtttttta tttagcaagg
     3481 atgtggctaa tgagtcagga cagtagagtt ttatcccact ctttcgtcgg tattgtggtc
     3541 cgctcgtagg cctgataagc gtagcgcatc aggcaatgct tcctgcttta taatcccttc
     3601 agcaactttt caacaaactc aggcaccacc tggcttgccg ggccgtaata tttctcggca
     3661 aattcattac cgacctgact tggttcgaga ttcagttcca cggtgtgcgc gccatgcagt
     3721 ttcgcttcgt gaacaaaccc agccgccgga taaacatgcc cggaagtacc aatggcaatg
     3781 aaaatatcag ccatcgacaa cgccatataa atttcatcca tgccgagtgg catttcgcca
     3841 aaccaaacga cgtgcgggcg caagggtgcc gggaactggc aacaatggca tttatcttct
     3901 ggcgtaacgt ctccggtcca gtcgagaacc tgaccacttt gcgaacaacg aactttcagc
     3961 aattccccat gcatatgaat gacattggta ttacctgcgc gttcatgcag gttgtctata
     4021 ttctgcgtta ccagcaaaaa gcgatcgccg agagcgtctt gcagtttagc cagcgcaaga
     4081 tgcgcggcgt taggctgaat ttttggctgc tgcagctgtc gacgacgggc gttataaaac
     4141 gcttgcacca gttcaggatc gcgatcgaaa ccttccggcg ttgccacatc ttcaacccga
     4201 tgttcttccc acaggccatc tgcggcgcga aaggtacgaa tacctgattc cgcagaaatt
     4261 cctgcccctg tcagtacgag tactcttggt ttttccattg cttccggcac cactttatct
     4321 ctgaaaaaaa tacgctgacg caaacgctcg cgcaggcggc gtttattttt acgaaaacga
     4381 cttaaccgat gaccccgacg cgacagcata gcaacctctg ttgtttaatc ggttagatgt
     4441 aggaaggccg caccacgcat tcctcccgca tcaccgtggc gcgcgcgttc aatgcgcgga
     4501 acacgagcta caggtaagag atgacgaggc agcctgtccg ccagttgcgt tgtgattgcc
     4561 gggaaattcg ataagccacc accaatgacg accaggtcag ggtcaacaat ggtcaggata
     4621 tttcccagac aaaccgctaa taaatccaga taacgctcaa cgtgcgccct tgcctgctca
     4681 tcgccttgat tataaagcgc aataatttcg ggagcctgca actgttgatg ataatagtgt
     4741 tgatacagcc acgcaaaacc gcgaccagac agataattct caatgcagcc atgctgacca
     4801 cagccgcagc ggcgtaacgg gaaatccaac cccatcatgg ttaacgcatc aaccggcaga
     4861 cgcatatggc caaactcgcc ggtaatgtag cttttaccgg taatcggttt gccgttgaaa
     4921 atcagcccac cgccaacgcc ggtaccaaga atcaacccca tcaccagtgg atattgcgta
     4981 aattcatcat ctcaggcttc tgaaagggca aaacagttgg catcgttatc aaggcgtaca
     5041 tcgcgatcaa gacgtgcgct caggtcggca cgcagcggtt taccgctggc agcggggaca
     5101 ttggcggcat acagcgtacc atcttctgtt tccggcattc ccggtatacc aatgccgaca
     5161 gaacctctac agccaaaacg ttgatcagct tcggctacca gctcgcacac tgcatctaaa
     5221 aatgcgtcat agctgtcacg cggtgtcggc acccgctttt cccactgcaa ctgccgaccg
     5281 ctatcaaaca cgccaagcgc aatttttgtt ccaccaatat caaacccgta atacattgcc
     5341 gctccttgtt ttaatgtact gcctttactg gccgctaagg actcgcgcag ggtcaatatt
     5401 actggcgcgc cgcgccggat accaacttgc caaaagactc agcaacaatg ctgtgaccag
     5461 tacgtagaag acgtccagcc agtgcaattc cgatggcagg aagtcaataa aatagatatc
     5521 gctggagagg aactgatgac cgatcagctt ttcaatccgc tcaataatcg gggtaagttg
     5581 cagtgaaaca actacgccga taatcagccc acacaggctg ccgaacagcc ctgccagcaa
     5641 tccataccag acaaagatgg cgcgaattaa accatctttc gcccccagcg ttcttaatac
     5701 tgcgatatcg ccactcttgt ctttcaccgc catcactaag gtggagacga tgttgaaaca
     5761 ggccacgcca atcaccagta ccatcgccag atacataatg gcgcggatca tctggatatc
     5821 gcgatacata tagccgtaag taccaatcca gcttttaata taaacatagc tgttggtcat
     5881 ttcacccgca tcgcgtacca gcttattggc gttgaaaaca tccgtcattt taagggcaat
     5941 acctgacacg ctggaaccca tatcaagata ttgttgggca tccgccagcg ggatcatggc
     6001 aaaactgtga tcgagttggc cactcaactg caaaataccc gcaacgtgca aacgcacacg
     6061 ttttggctgc atcagtttat gctcaggatt cgagttgggg atcatgatcg acacccaatc
     6121 gccctgcttc actttcagcg catccgccac gcctttgccg atgataattt gctgttcgcc
     6181 cgctttaaaa ttgcgccacg catccccctg aacaaacgag ggtaatgcgc tcagacgctg
     6241 ttcctgttgt gggttaacgc ccttcacctg gattgcgcgc agattcgctc cactttccac
     6301 cagcccggtg aaattgatat acggcgcagc ggcggcaata cccggcactt tctgcacttt
     6361 atccagtgct tcctgccagt tagtccatgg ctgatttacc gcttcgattt caccatgcgg
     6421 caccaccgcc agaatgcggt tattcagttc gcgttcaaag ccgttcatcg cgcttaagcc
     6481 gacgatcaat accgccacac cgagggcaat gccaatggta gaaatgacgg agatcagcga
     6541 caccatgcca ccgcgccgcc gtccgcgact aaaacgcagg ccaattaata acgataaagg
     6601 catcgccatt actccgcccc catcaggctc agttccgccg tcagacgtcc atcacgcatt
     6661 tctaactggc ggctcatacg tttcgccagt tgcaggtcgt gagtaaccac caggaaggcg
     6721 gtgccctgca agcgattcaa ttccccaagc aactggaaga tgctgtcggc gttacgcgca
     6781 tcgaggttac cggtaggctc atccgccagt accagacgcg gattattgac cagcgcacgg
     6841 gcaatcgcta cacgctggcg ttcgccgcca gaaagttcag atgggcggtg attcgcacga
     6901 tgctccagcc ccaccgcttt taacatctcc agtgcacggc tgttgatttc agcgggcttt
     6961 ttcttgccaa tcagcagcgg catagccacg ttttccaggg cggtaaaatc cggcagcagg
     7021 tggtgaaact gataaataaa gcccagtttc tggttgcgca gttctgcttt tgctgccgac
     7081 gacagtttgc tcatcggttg accgttaaag atcacatcgc cggaggttgg cgtatccagt
     7141 ccgcccagca ggtgcagcaa ggtgctttta ccggaaccag agctaccgac gatcgccatc
     7201 atttcacctt cgccgacgct gaaactgaca ttgtgcagta catcggtttg cacactgcct
     7261 tcctgatagc gtttgcacag gttgtcgcat tgcaacagga tcttattcat aacgtaaagc
     7321 ctcagcgggt tgtgtggcgg cagcgcgcca tgaagggtaa agcgtagaca gcagcgcgat
     7381 agccatcgcc accagcgcaa taacaatgac ctgtaaaggt tcgatagcca tcggcagcgc
     7441 cgcgccatca agcaggacgc cgattattgg catcagatta tttaactggc tggcaagcag
     7501 tgcgccaagc gccgctccga ggatcgcacc gataatcccg gcgctggccc cttgcaccat
     7561 aaagatcatc atgatttgtc gcggagttaa gccttgcgtt tgcaggatcg ctacttcgcc
     7621 ctgcttctcc atcaccatca gccccagcga ggtaataatg ttaaacgccg caacggcgac
     7681 aatcaggctc agcagtaaac ccatcatatt tttttccatg cgtacggcct ggaacaactc
     7741 gcctttacga tcacgccagt cctgccattt gctgtcttca ggcagttttt gctgacttaa
     7801 tgagtcgact ttcagcggct catccagcca caaacgccag ccggtaatat tgcctgccgg
     7861 ataacgcatc agacgcgagg catcctcaat attcaccagc atttcattgc catcgacttc
     7921 actgttggcg gcgaaagtgc caatcacatt gaacaggcgc tgacttggaa tacgccccat
     7981 cggcgtgaac tggctggcag atggtaccat catgcggatt tgatcaccgc gattaacgcc
     8041 tagctgtgag gcaagttgtt cgccgaggat gacattatat ttccccggct cgaggtcagt
     8101 ttgtttcaca ttgaccagat acggcgttag tggatcttct tgcgccggat cgatacccag
     8161 catcaccccg accgccacgc tgcgcgcgct ttgcagtacc acatcaccgg tagtaatagg
     8221 tgcgacgcga ttaacgccgt ccagtttgac tgccgtttcc gggagttgct gcgggttaag
     8281 agagccatgc tcagaagaga gaattgcctg tggcatcagg ccaaggatgt tgttttgcag
     8341 ctcgcgctca aagccgttca tcactgacaa tactgtgacc agcgccatca ccccgagggt
     8401 aatgccgatg gtagaaagcc aggagacgaa acgaccgaag cgatccgctg cacgcccacg
     8461 catgtaacgc aggccaataa ataaagcgac aggttggtac atgaaatccg tctggttgct
     8521 gtagcaaaga cacgagtata taagcgaaag caagatgggt aaacgtctga actgtaagtg
     8581 atcgtcaggg ctaatctgaa aagcccccgt aaatcaatcg gctaaattgc catgttttat
     8641 catcaatctt gccgcctgat cttaatctga aaaatcatcc aatacagaca gatacccatt
     8701 acacctcggg tcataacccg caggatcaac cgcatgtaaa ttaaaaaaga gcgtgttgtc
     8761 ctgatgaaac aaaaagagct atggattaac cagatcaaag ggttatgtat ttgtccggtg
     8821 gtgatttatc actcggtcat taccttttat ccgcatatga ccacttttca gcatccgtta
     8881 tcggaagtcc tgagcaaatg ctggatctat ttcaatcttt accttgcacc ctttcgtatg
     8941 ccggtttttt tctttatatc cggctatttg attcgccgct atatcgacag cgtaccgtgg
     9001 ggaaattgtc tcgataaacg gatctggaac atcttctggg tgctggcgct ttggggcgtg
     9061 gtgcagtggc tggcgttaag tgcgctgaac cagtggctgg cacctgagcg cgatttaagc
     9121 aatgcctcca atgccgctta tgccgattcc accggtgagt tcctgcacgg gatgatcacc
     9181 gccagcacca gcttgtggta tctgtatgcg ttaattgtct atttcgtggt atgtaaaatt
     9241 tttagccgtc tggcgctgcc actattcgcc ttgtttgtac tgctgagtgt ggcggttaat
     9301 ttcgttccca cgccgtggtg gggaatgaac agtgtgatcc gcaatttgcc ttattacagc
     9361 cttggcgcat ggtttggcgc aacaataatg acctgtgtta aagaggtacc gttgcgccgc
     9421 catctgctga tggcttcttt gcttaccgtt ctggcggtcg gtgcctggtt gtttactatc
     9481 tcgctgctgt tgtcgctggt atcgattgtg gtgatcatga agctgtttta tcagtacgag
     9541 caacgattcg gtatgcgctc caccagcctg ctgaatgtga ttggctccaa caccattgct
     9601 atctacacca cccatcgcat tctggttgaa atattcagct taactctgct tgcgcaaatg
     9661 aacgcagcac gctggtcgcc gcaagtcgaa ctgacactcc tgctggttta tccctttgtc
     9721 agtttgttca tctgtactgt tgcgggcttg ctggtaagaa aactttcaca gcgtgcattc
     9781 agcgatctgt tgttctcccc gccttcactg cccgctgccg tcagttactc ccgctaagcc
     9841 atcgccccag ccggggcgat tcaatttgct aaaccatgtc gattacggat aatgaacagc
     9901 attgcttatc agagatatgc ccccatatgt tgaggcatat cctaacgaga atctgacaac
     9961 cgttatgcct gaacaatatc gttatacgct gcccgtcaaa gcgggtgagc agcgtctgct
    10021 gggcgagtta accggcgcag cctgtgcaac gctggtagcg gaaattgccg aacgtcacgc
    10081 cggtccggtg gtactcattg caccagatat gcaaaatgct ctgcgtttgc atgatgaaat
    10141 cagtcagttc accgatcaga tggtgatgaa tctgggggac tgggaaactc ttccctacga
    10201 cagcttttcg cctcatcagg acattatctc ctcgcgcctt tccacccttt accagctacc
    10261 gacgatgcag cgtggcgtac tgattgttcc ggtgaatacg cttatgcagc gcgtttgccc
    10321 acacagtttt ctccacggtc atgcgctggt gatgaaaaaa ggtcagcgcc tgtcactaga
    10381 tgcattacga acccaactgg acagcgccgg ttatcgctat gttgaccagg tgatggagca
    10441 cggcgaatac gccacgcgcg gcgcgttgct ggatctcttc ccgatgggga gtgagctgcc
    10501 ttatcgtctt gatttctttg atgatgaaat cgacagcctg cgggtgtttg acgtcgacag
    10561 ccagcgcacg ctggaggaag tagaagcgat caatctgctg cccgcgcacg aatttccgac
    10621 cgataaagcg gcaattgaac tgttccgcag ccagtggcgc gataccttcg aagtgaagcg
    10681 cgatccggaa catatttacc agcaagtgag taaaggcaca ttacctgccg ggatcgagta
    10741 ctggcagcca ttgttcttca gcgaaccact gccgccgctg ttcagttatt tccctgccaa
    10801 taccttgctc gtgaatactg gcgatctgga aaccagtgcc gaacgtttcc aggctgacac
    10861 gctggcgcgt tttgagaatc gcggcgtcga tccgatgcgc ccgctgttgc caccacaatc
    10921 gctctggctg cgggtggacg agctcttctc agagctgaaa aactggcccc gggtgcagct
    10981 aaaaactaaa catttaccga caaaagccgc gaatgccaat ttaggtttcc agaaactgcc
    11041 agacctggcc gttcaggcgc aacaaaaagc gccgctggat gcgctgcgta agttcctcga
    11101 gactttcgac ggtccggtgg tgttctcggt agaaagtgaa ggtcgccgtg aagcgctggg
    11161 tgaactgctc gcacgaatta aaattgctcc gcaacgcatt atgcgtcttg atgaagccag
    11221 cgaccgtggg cgttatctga tgattggcgc tgccgaacat ggttttgtcg ataaggtgcg
    11281 taatctggcg ctgatctgcg aaagcgatct gctcggtgaa cgtgttgccc gccgtcgtca
    11341 ggattctcgc cgcaccatca accccgatac actgatccgt aaccttgcgg agctgcatat
    11401 tggtcagccg gtggtccatc tggagcacgg tgtcgggcgc tatgccggaa tgaccacgct
    11461 cgaagcgggc ggcattactg gcgagtattt gatgctcacc tatgccaacg acgccaaact
    11521 gtatgttccg gtgtcgtcac tgcatctgat tagccgttac gcaggtggcg cggaagaaaa
    11581 cgccccgctg cataaacttg gcggcgatgc gtggtcacgc gcgcggcaga aagcggcgga
    11641 aaaagtgcgt gatgtggcgg cggaattgct ggatatctac gcgcaacgcg ccgccaaaga
    11701 gggcttcgcg tttaaacacg atcgtgagca gtatcagttg ttctgcgaca gcttcccgtt
    11761 tgaaaccacg ccggatcagg cgcaggccat taatgcggta cttagcgaca tgtgtcagcc
    11821 gctggcaatg gatcgtctgg tgtgcggcga tgttggcttt ggtaaaacag aagtggcgat
    11881 gcgcgccgct ttcctggcag tagataacca caagcaggtg gcggtgttgg tgcctaccac
    11941 ccttctcgcg cagcagcatt acgacaactt ccgcgaccgt ttcgccaact ggccggtacg
    12001 tatcgaaatg atctcccgtt tccgcagcgc caaagagcag acgcaaatcc ttgcggaagt
    12061 ggcggaaggg aaaatcgata ttctgatcgg tacgcacaaa ctgctgcaaa gtgacgtcaa
    12121 gtttaaagat ttaggcctgc tgattgtcga tgaagaacac cgcttcgggg tgcgtcataa
    12181 agagcgcatt aaagcgatgc gcgcgaacgt ggatattctg acgcttactg caacgccgat
    12241 cccacgcacg ctgaatatgg caatgagcgg aatgcgtgac ctgtcgatta tcgccacgcc
    12301 gcccgcccgt cgtctggcag ttaaaacctt tgtccgtgag tatgacagcc tggtggtccg
    12361 ggaggcgatc ctgcgtgaaa ttttgcgcgg ggggcaggtt tattatctct acaatgatgt
    12421 ggaaaacatc cagaaagctg ccgaacggct ggcagaactg gtgccagaag cgcggatcgc
    12481 catcggtcac gggcagatgc gcgagcgcga actggaacgg gtgatgaatg atttccatca
    12541 tcaacgtttc aacgtgctgg tttgtacaac cattatcgaa accgggatcg acatcccgac
    12601 agccaacacc attatcattg aacgcgcgga tcacttcggt ctggcgcagc tgcaccagtt
    12661 acgcggtcgc gtcggacgtt cacatcatca ggcatatgca tggctgctga cgccgcatcc
    12721 aaaagcgatg actaccgatg cacaaaaacg tcttgaagcg attgcctcgc tggaagatct
    12781 cggtgcaggc tttgcgctgg caacgcacga tctggagatc cgcggcgcgg gtgaactgct
    12841 tggcgaagaa caaagtggct caatggaaac catcggtttc tcgctgtata tggagttgct
    12901 ggaaaacgcc gtcgatgcac tgaaagccgg acgcgagccg tcgctggaag atctcaccag
    12961 ccagcaaaca gaagtcgagc tgcggatgcc gtcgctattg ccagatgatt tcattcctga
    13021 cgtgaatacg cgtttgtcgt tctataaacg tattgccagc gccaaaacgg aaaacgaact
    13081 ggaagagatc aaagtcgagc ttatcgatcg cttcggcctg ctgccggatc cggcgcgtac
    13141 cctgctggat gttgcccgtc tgcgccagca agcgcagaaa ctggggatca ggaagctgga
    13201 aggtaatgag aaaggcgggg tgatcgaatt tgccgagaag aatcacgtta atccggcctg
    13261 gttgattggt ttgctgcaaa aacagccgca gcattaccgc cttgatggtc cgacgcgcct
    13321 gaaatttatt caggatttga gtgagcggaa aacgcgtatc gaatgggtac gccagtttat
    13381 gcgtgaactg gaagagaacg cgatcgctta atggtaaatc gggggcgttt ctgcgccccc
    13441 atcggcaaca tttacaaatt ctttgcactt ccctgcacta tccgacactg tcaccatcca
    13501 taattcaggc ttatctgttt attacaataa ccttatattt attatggatt tttggtgatg
    13561 atcaaaacgc gtttttctcg ctggctaacg ttttttacgt tcgccgctgc cgtggcgctg
    13621 gcgctaccgg caaaagccaa cacctggccg ctgccgccag cgggcagtcg tctggttggc
    13681 gaaaacaaat ttcatgtggt ggaaaatgac ggtggttctc tggaagccat cgccaaaaaa
    13741 tataacgtcg gctttctcgc tctgttacag gctaaccccg gcgttgatcc ttacgtaccg
    13801 cgcgcgggca gcgtgttaac gatcccgttg caaaccctac ttccagacgc gccgcgcgaa
    13861 ggcattgtga tcaacattgc ggagctgcgt ctctattact acccgacggg taaaaattcg
    13921 gtaaccgtgt atccaatagg tattggtcag ttaggtggtg acacgctgac accgacaatg
    13981 gtgaccaccg tttcagacaa acgtgcaaac ccaacctgga cgccaacggc aaacacccgc
    14041 gcccgttata aagcacaggg aattgagttg cctgcggtag tgccggctgg accggataac
    14101 ccaatgggcc atcatgcgat tcgtctggcg gcctatggcg gcgtttattt gcttcatggt
    14161 acgaacgccg atttcggcat tggcatgcgg gtaagttctg gctgtattcg tctgcgggat
    14221 gacgatatca aaacactctt tagccaggtc accccaggca ccaaagtgaa tatcatcaac
    14281 actccgataa aagtctctgc cgaaccaaac ggtgcgcgtc tggttgaagt acatcagccg
    14341 ctgtcagaga agattgatga cgatccgcag ctgctgccaa ttacgctgaa tagcgcaatg
    14401 caatcattta aagatgcagc acaaactgac gctgaagtga tgcaacatgt gatggatgtc
    14461 cgttccggga tgccggtgga tgtccgccgt catcaagtga gcccacaaac tctgtaaatc
    14521 ctggataaaa aaaatccccg cgacacggca tgtcgcgggg aaaaaatcag tagtagcagg
    14581 cattaatgag ggttaatgct tatttataaa ttactgctgt tccatggagg gtattcggac
    14641 cggttacaga agtaatacgg aaagattttg cgcccatctc atccgctttt tgcgccagct
    14701 gctcttccag cgatcccaga tttgtccccg ctttagcact gattgtaccg actttttgtt
    14761 ggccttctgg cgttgactga acttcgacag ccgcaaagct ggcaaatgac atggagctta
    14821 aaatcgccgc agcgatgagg gtttttacgt ttttcataat agtggcctta tgcagatgaa
    14881 tgacgtcgca agcaattatt taacgatcga taactaaatg acagatgtga tctggatcac
    14941 atacaagata ttttttataa caatcattaa ttaatttaaa aatctttaaa tttcagttaa
    15001 atagaaagca attattttta tgggatctgg actggtgaac ggaggtgatt atttttataa
    15061 taacctttca ttcacagtca ccaggtacaa cggcatcatg gcaactgact caacacaatg
    15121 tgtaaaaaaa agccgtggcc gcccaaaagt gttcgacagg gatgccgcgc ttgataaggc
    15181 catgaaattg ttctggcaac acggttatga agcgacttct cttgcggacc tcgtcgaagc
    15241 gaccggagcc aaagcgccca cgctatacgc ggaatttacc aacaaagagg ggttatttcg
    15301 tgccgttctc gaccgctata tcgatcgttt tgccgctaag catgaagcac agctgttttg
    15361 tgaagagaaa agcgtggagt ctgcgctggc tgactatttt gctgccatcg ccaactgctt
    15421 taccagcaaa gacaccccgg caggctgctt catgatcaac aactgcacca ccctctcccc
    15481 agattcagga gatatcgcca atacgttgaa atcacgccat gcgatgcaag agcgcacttt
    15541 gcagcagttt ttatgtcaac gacaagcgcg cggggaaatc ccgacccact gtgacgtaac
    15601 acatctggca gaattcctta attgtattat tcaggggatg tcgatcagcg cacgcgaagg
    15661 tgcatcgctg gaaaaactaa tgcagattgc cggaacgact ttgcgtttat ggcccgaact
    15721 ggtgaaataa gtcgcaaaaa aagcccctca gcctgagcga atgaggggcc aaattgcaga
    15781 gtacagcctt gttatacttt gttattcaaa atcagttgcc cattactatc tagcgggatc
    15841 tgcgtacccg gatcgcggtc catgcggatt ttgccctgct gatcgccaat cttataggtc
    15901 acatcataac cgagcatttt ttctgacttg tcatacaccg ttttacaacg ctgttgcgta
    15961 gtcgtgtaag tatcgctttc ctggagagag ccctggatct ggttaccggc atatccacca
    16021 cccagcgccc ccacaacagt ggcgacatct ttaccgcgac caccgccaaa ctgatgccct
    16081 atcacgccgc cagcaacagc gccgagcacc gacccggtaa tgcgattttc atcctgcacc
    16141 ggtcgacgat gggtcactgt gacgttgcga cactcctgac gcggtgtttt aaccgtttcc
    16201 ttgattgggg ttgcagaaac aacctgagcg tattgcgggc cacgttcaaa cacgttcaga
    16261 ctggccactg ccgctacgcc cagcgcagct gcgacaccaa tcccgatacc cgccaacatt
    16321 gatttattca cgggaacacc tccttctttg cagttatgcc aatcatgcaa gcgaaggaga
    16381 aaagcagcta tcagacagaa gatgaaaagc gcgggaatgg ctggaaatac ttaatgattc
    16441 ggaggagtct gaaggaatgc ctgatgcgac gcttaacgcg tcttatcagg cctaccgctc
    16501 gtaccatttg tccagggcgg atgaggcgtt tatgccacat ccgccagtgt acgtcgatta
    16561 atgcaacttc aaacgcggac ggataacgcg gttaatactc cccaccagca tcattaatcc
    16621 ggttttaaag taaccatgca gcgcaatctg atgcattcgg tatagcgaga tatatacaaa
    16681 gcgcgcaatt cgtccttcaa tcatcattga gccgcgcgtc aagttaccca tcaggctacc
    16741 aacggtggag aagttcgaca gcgataccag tgaaccatga tctttatact gataattttt
    16801 cagcggctta ccgtttatct gcgccagaat attgttcatt gcgcaagtcg ccatctggtg
    16861 tgcagcctga gcacgcggcg gaacaaagcc cccttccgga cgcgtgcatg acgcgcagtc
    16921 gccaatagcg taaatgtctg gatcgcgggt ggtttgcagc gtcggttcca ccaccagctg
    16981 gttgatacgg ttagtttcaa gaccaccgat atctttcagg aagtctggcg ctttgatccc
    17041 ggctgcccac accatcagat cagcctcaat atattcacca tctttagtgt gcaggccgcc
    17101 ttcatcagca ctggtgacca tggtttgcgt cagcacgcga acgccaagtt tcgttaactc
    17161 actatgggcc gcagcagaga tgcgtggcgg taatgcaggc aaaatacgtt ctcccgcttc
    17221 tactagcgtt acgttcaggg cttcgttggt cagaccttta taaccgtagc tgtgcagttg
    17281 cttgaccgcg ttatgcaact cagcggagag ttctacaccc gtcgcgccgc caccgacaat
    17341 cgcaatgttc actttgccat tcgcgcccag gttggcggag tatttcagga acagattcag
    17401 catctcctgg tggaagcgac gcgcctggtg cgggttatcg aggaaaatgc agttctcttt
    17461 gacgcctggc gtattgaaat cgttagaggt gctacccagc gccatgacca gggtgtcata
    17521 ggcgatttta cgttccggaa ccagcagttc acctttctcg tcgcgtagtt ctgcaatagt
    17581 gattgttttc gcttcacgat caatatcaat gacggaaccc aactggaact ggaaaccatg
    17641 attgcgcgca tgggccagat agctcaacgc atcgacgcct tcatcaagcg agccagtcgc
    17701 cacttcgtgc agcagcggtt tccacaggtg gctgtggtta cgatcgacca gcgtaatttt
    17761 ggcttttttc ttacgtccca gcttatgccc cagctgtgtt gccatttcca gcccaccagc
    17821 accgccgccg acaatcacaa tctttttcaa tggcgtagtc aacgtgaccc ccttaaattt
    17881 attaaccaat tgttaattaa tggttattaa catagctctt aattaacaac aggttacagc
    17941 aatgaaaatg ttcttcgcta ttgagaataa catgaatggt gcattggtca taccaaaatt
    18001 gatgttaatc aagttttgtt gctgaaaaga taggcgactt taccgggtaa gatcaaaaaa
    18061 tagagtttat tgtttattat ttgagcgaat ttgtgagagt gatatagcgt gaggggtgta
    18121 tgcagggcgt tcggtaggcc tgataagagg cgcatcaggc attgatgctc gactgtcgga
    18181 tgcggcgtaa acgccttatc cgacttacag aattcggagc gcatcaggta ccggcaaggt
    18241 tacctgatgc gacgagggca tttacccgag ggttttgaac gctttaatgc gctgcaaatg
    18301 cggggagata ttcttgaatt tgtgcgtctg ctcttcgtcc cagacaatct cgtaataatg
    18361 atgcaactct tcagatgtcc gctggctgtt aagcgcttca tcattacgcg acaaaatcac
    18421 caggcaacga tcgcgattct tctcgcggaa gttggtcaca cacttagtgg caatatcggc
    18481 atactcttcc gggcgatcaa tcttgccttc catgttctca taagggaaca aattagggtt
    18541 gaagatcacc tggcggatat cgcaaagaaa accaatccgt tccgcccagt atccgcccag
    18601 accaacgccg caaatcagcg gacgctcgtc gacgttcagt tgcaacattt tgtccacttc
    18661 tttaagcaga tgctgcatat catgtttcgg atgccgcgta ctgtagctta tcaagcgtac
    18721 atccgggtca ataaactgca attgtaagac tttctcgtgg ttacccggac tgttagagtc
    18781 aaaaccgtgt aaatagataa tcatcgcttc ctcacataag ccagggttag tgacctgctt
    18841 tctcttcctg ccagcgttca tgtaactgat tcagacgggt gctgctcgcc ttccagcgag
    18901 ccgagtccat cagttcctgt cgcgaaaatg aacctttatg atacaaacgt gtaacacgtt
    18961 ctgccttgat cggtgacaga ttatctaaca cgctgacggc ccctttacga ttattgcaga
    19021 ccaggatcat atcgcaacct gcgtccagtg atgcctgccc gcgttcggca taactgccca
    19081 taatcgcggc accttccatc gataaatcgt cagagaaaat tacaccgtca aaacacagtt
    19141 cctgacgcaa aacggttttc agccagtagg aagaaccgct cgccggacgc ggatcaacat
    19201 cactgtagat cacatgcgca ggcataatgg cgtcgagttt attttcgcgg attaacgtgc
    19261 tgaaaaccga catatctttg gcacgaattt ccgcttgcgg gcgtgggtcg cacggcgtct
    19321 ctttgtgtga atctgcagtt actgcaccgt gtcctgggaa gtgtttcccg gtcgttttca
    19381 ttccggcttc atgcatccca tcaataaacc gactggcgat tgccagggct ttttctgggt
    19441 cggcatgata agaacgctcg ccaatcgccg cgctgatatg tcctacatcc agcactggcg
    19501 caaagctgat atcaatatcc atagcgatca tttcgctggc catcagccaa cccgcctctt
    19561 gcgccagttt gccgccctct tccattccca acagcgcagc aaaggattgt gctgccggta
    19621 agcgggtaaa accttcgcga aaacgctgca cgcgtccacc ttcctgatct accgccacca
    19681 ccagatgatt gcgcgatgct gcgcggatct ggcgcaccag ttcacgtaac tgggcaggat
    19741 catgatagtt acgcgtaaag agaatcagcc ctcccaccag cggatgcgcc agtatttcac
    19801 gctcttccgc gtccagttcg taaccttcga catccaacat tactggaccc acactgctct
    19861 ccttattgtt ttattaatag ctgccgccag gtgtcatcgg ccagcctgat aaattgttga
    19921 tcgccggttt gtcgccagcg gtactcaaac caccctgctt tgagcatcag cagccaggga
    19981 aaccatcgcc tgacctgacg ccataattgc gccggataaa tcttcgcgcg agtggcatag
    20041 tcattgacca attgccggtg ctgttcagta ttttccaccc acaccgccgc cagttccagc
    20101 gcggtatcac catctccggc atactcccag tcgatgagtt ttaaccctga tgcgctatgc
    20161 actaaatttc cggcgtggac atccatatgc aatggactta agcgtaaagg tcgtggttcc
    20221 cgcgctttgc gcagacgttt taacattcgc agccaaccca cagtccgccg cgccggatcg
    20281 ctttgctgcc agtacagttc cagtaacggc aacagcatta ttcgccagcc aaaacgtggt
    20341 tgttgatgta gataatacag caagcctgcc agttcgttgg tatccggcaa atacgttttt
    20401 accgcgccgg gcagatagtc gactaccatc cagtcacgga gatataaatg cggcttcggt
    20461 gcaatgcttg cgggtagttg tgataaagcc cgatactggc gcaagaacgc ggactgcggc
    20521 gcatcaggat cgtgcggctg acgcacaaca aaacgctggc cctgatgttc aatgagaaaa
    20581 ctaccgccac taagcccact attaaacgtc gtgacgggat gaaactgcgg gaaaaagcgc
    20641 gacagcaatt cgtcgcgcgt gatgggatta ttactgcgaa acggcacctt tacctgacca
    20701 gataatttcg cccgtctgca ccagcatcag ctgcatttgt agggtcggag cgttaacgtt
    20761 gccagaggcg ctggagtaca gcacgtaatg agcgccgaca ttgcgggcaa tgcctatggc
    20821 tttactacgg gtgcctaaac tgtcctgcgg cgacaaacct aactgttgct tagccatcga
    20881 cagttgctgg gcggaaacca gggtaaattt cccgttatta gccagcgcat ttcgcagcgt
    20941 ttcggtcgct tctgcggcat tcagcgaacc gttagtacgg ttgttaacgc tatcaaccag
    21001 caggacgcta cccgcagtca ccccgtcagc cccaagcatc ttactgacca tcggctgcat
    21061 tgcgccattc cagtcataat ggcgaatatg cggcgcaggc ggtgccgttc gatcttcgtg
    21121 ctcaattggg cctggctgct gcgggatcgt cggcaccgag ggcactgtgg ggacaggctg
    21181 ttgtggctcg gctggttgtt ccggcgctgg tttcacttct tctaccggtg caggttcacg
    21241 ttgccccaca cacccggcga gaaacatcgc cagcgcggta atcaaggcgt agcgactcat
    21301 ttttgtcatc aagattcacc ccttacaaat atagataaag tctgactttg tgcgccccca
    21361 gaaaattggc gctgccgtac agcgttaccg ccgaatgtgc gggaatggta acgctgcgtg
    21421 gcctttccag aggatgcatc tccagccctc tggcgtcata ccagtaaaaa cgataatgaa
    21481 cggtaacggg tttttgcctt tcgttataaa gcgttgagga tgctgaaggt tgaatatcag
    21541 acgtcgaaag gacgggcttt tctgcactga tgcccgcagc caataaagat gactccatca
    21601 ccagcgattg ctcatcattc accggaattt ccggatgtga acgacagccc accagcagta
    21661 acaacaccag agacaccagc ccaaagcatc cttttctcat cgttacagac ctttatgcgc
    21721 cagcattggt cccagcggac ggccacccaa caagtgcata tggatgtggt aaacctcttg
    21781 tccgccatgg cggttggtat tcatgatcag acgatagcca tcttcggcaa taccttcttg
    21841 ctcagcaatt tttgccgcta cggtgatcat gcgtcccagc gcctgctcat gctcagctga
    21901 gacgtcgttc acagtcggaa tgaggatatt cggaatgatc agaatatgcg ttggcgcttg
    21961 cggcgaaata tcgcgaaacg ccgttaccag atcatcctgg tagacgatat cggaggggat
    22021 ctcacgacga ataattttgc tgaatatagt ttcttctgcc acgacatttt cctttttcaa
    22081 atagccatgc gttgcgccat gctacgccgc gccacactgc gagtatagag tatggtcgag
    22141 ttaaacctgc tctttcaacc ttaactcacg atttcttaag caaaaaatcg ttttgctgcc
    22201 gtatatatcg ccattattcc catttctgcc tgcgaatgcg ctgaaaagac attctctgtt
    22261 tggtttacac gacaaatatg aatgcgtata tttctcattt gcatttacaa acaaaattat
    22321 tcgcacacta aatataatcg ctcatcaccc tcctccggca tgagcctgac gacaacataa
    22381 accatgagat ttcaaatgct ttcaacacaa tttaacaggg ataatcaata tcaagccatc
    22441 accaaaccat cactacttgc cggttgcata gcactggcac tattaccttc tgccgctttt
    22501 gctgcaccag ccactgaaga aacggtgatt gttgagggtt cagccacagc tccagatgat
    22561 ggcgaaaatg attacagcgt aacgtctacc tctgcgggta ccaaaatgca gatgactcaa
    22621 cgtgatattc ctcagtcggt cactattgtt agccagcagc ggatggaaga tcagcagtta
    22681 caaacgctgg gcgaagtgat ggaaaacacg ctggggatca gcaaaagtca ggcggattcc
    22741 gatcgtgctc tttattattc ccgcggattc cagatcgata actatatggt tgatggtatc
    22801 cccacctatt ttgaatcgcg ctggaatctg ggcgatgcac tttctgatat ggcactgttt
    22861 gaacgcgtag aagtagtgcg tggcgcgaca ggactcatga ccgggacggg taatccatct
    22921 gcggcaattg atatggttcg aaaacacgcg accagtcgtg aatttaaagg cgatgtctcg
    22981 gcggaatacg gtagctggaa caaagaacgg tatgtggcgg atttacaaag cccactcacc
    23041 gaagacggta aaatccgcgc gcgaattgtc ggcggctacc agaataacga ctcatggctg
    23101 gaccgctaca acagtgaaaa gaccttcttc tccggcattg tcgatgctga tttaggcgat
    23161 cttacgacgc tttcagccgg ttacgaatat cagcgcattg atgttaatag ccctacctgg
    23221 ggcggtttac cgcgctggaa tactgatggc agcagcaaca gttacgatcg tgcacgcagt
    23281 accgcacctg actgggcgta caacgataaa gagatcaaca aggtctttat gaccctgaag
    23341 cagcggtttg ctgatacctg gcaagcgaca ctgaatgcca cccactctga agtcgaattt
    23401 gacagcaaaa tgatgtatgt cgatgcctat gtaaacaaag cggatggtat gctggttggg
    23461 ccatacagta attatggacc tggctttgat tatgtcggcg gcaccggttg gaacagtggc
    23521 aaacgtaaag ttgatgcgct ggatttgttc gctgacggta gttatgaatt gtttggtcgt
    23581 cagcacaatc taatgtttgg tggcagttac agcaaacaaa acaatcgtta cttcagttca
    23641 tgggccaaca tcttcccgga tgaaattggc agtttctaca actttaatgg caatttccca
    23701 caaaccgact ggtcaccaca gagcctggca caggacgata ccacacatat gaaatcgtta
    23761 tatgctgcca ctcgagtcac ccttgccgat ccgctgcatc tgatcctcgg cgcacgttat
    23821 accaactggc gggttgatac gctgacttac agcatggaga aaaaccacac cacgccttac
    23881 gctggtctgg tgtttgacat caatgacaac tggtcgacct acgccagcta tacctctatt
    23941 ttccagccgc aaaatgatcg tgacagttca ggcaaatatc tggctccaat caccggtaac
    24001 aactacgagc tgggtctgaa atcggactgg atgaatagcc gtctgaccac cacgttagcc
    24061 atcttccgta ttgagcagga taatgtcgct cagtccaccg gtacacctat ccccggcagc
    24121 aacggcgaaa ccgcctataa agcggtggat gggacagtca gtaaaggggt ggaatttgaa
    24181 ctcaacggcg caattaccga caactggcag ctgacatttg gcgcaacgcg ctatattgca
    24241 gaggataacg aaggaaacgc cgttaatcct aatctgccac gcaccacggt taaaatgttc
    24301 accagctatc ggttgcctgt catgccagag ttgacagtcg gcggtggtgt taactggcaa
    24361 aatcgcgtgt ataccgacac cgtgacaccg tatggcacct tccgcgccga gcaaggtagc
    24421 tacgcgctgg tggatctctt cacccgctac caggtgacga aaaacttctc gttacagggg
    24481 aacgtcaata acctgttcga caaaacctac gataccaaca tggaaggttc tatcgtctac
    24541 ggcgcaccgc gtaatttcag cattaccggc acgtatcaat tctgaataac acctgtaaaa
    24601 aaggcagcca tctggcagcc ttagtctccc caacgtctta cggattagtg gttacggatg
    24661 tactcatcca tctcggtttt caggttatcg gatttagtac cgaaaatcgc ctgaacacca
    24721 gaacccgcaa ccactacgcc cgctgcgccc agtttcttca ggccagcctg atccacttta
    24781 gacacatcag caacgctgac gcgcagacgg gtaatacatg cgtcgaggtt agtaatgttt
    24841 tctttaccac caaatgcagc aaccagagcc ggtgccattt cgctggtacc tgttgctttt
    24901 gcatcttcag tcgcgtcttc acgacccggc gttttcagat ccagtgcttt aatcagcacg
    24961 cggaagatgg tgtagtaaac aatcgcataa ccgataccga cgatcgggaa cagccacagt
    25021 ttgctgctgt taccagacag aacgataaag tcgatcagac cgtgcgagaa cgacgtaccg
    25081 tcacgcatcc ccagaagaat acagattggg aatgccaggc ctgccagaat cgcgtggatg
    25141 atgtacagga tcggcgcaac gaacatgaag aagaactcga tcggctcggt gataccggtc
    25201 aggaacgagg tcagcgccgc ggagatcata ataccgccca ctttcgcgcg gttttctggt
    25261 ttagcagagt gccagatagc aattgcggca gctggcagac cgtacatttt gaacaggaag
    25321 ccaccagaca gtttacccgc agtcgggtca cccgccatat aacgcggaat gtcgccgtgg
    25381 aaaacctgac ctgctgcgtt ggtgtattca ccaatctgca tctggaaagg tacgttccag
    25441 atgtggtgca gaccaaacgg taccaggcaa cgttcgatga aaccgtaaat gccaaacgca
    25501 actaccgggt tctggtaagc agcccactga gagaaggtct ggattgcaga accaatcggc
    25561 ggccaaatga aggacagcac aacgccagta aagatggcag ccaggccaga aatgatcggc
    25621 acaaagcgtt taccggcaaa gaagccaaga tactcaggca gcttaatacg gtagaaacgg
    25681 ttaaacatgt acgctgcgat cgcaccggag ataatccctc cgagtacgcc agtatccgcc
    25741 aggtgtttag aggcgatttc ttcagcaggt aaatgcagta ccagtggcgc aaccacggcc
    25801 atggttttaa ccatgatgcc ataggcaaca actgcggcca gcgcggatac gccatcgtta
    25861 ttggtaaagc cgagggcgac accgatcgca aaaatcagtg gcatgtttgc aaagacggaa
    25921 ccgcctgctt ctgccataac atgcgataca acggcgggca gccagctgaa attcgcggaa
    25981 ccgacgccca gcagaatacc tgcgataggt agtacggata ccggcagcat cagcgattta
    26041 ccgacctttt gcaggttagc aaatgcattc ttaaacataa ttgagagtgc tcctgagtat
    26101 gggtgctttt tttacgttct cacgcgtggc aaggggggag agcctcgccg tgtacagggc
    26161 atctaagcgc cctttattta ttacacagag taaaataatt cagtgccaat ttgtttgacg
    26221 gctatcacgt ttcaacttca gatcattgga gaagttgcac attttgacaa aacatatgtc
    26281 acaatatttc aaacgcggtt attcaccgcc caattttcgg cggtgaactt tactcgtttt
    26341 agccattaat tacgagcttt aaaaaaactc attcaacgga tggattgaag gcgggaagcg
    26401 tcgatgtgaa acagacgggc gaagttatcg gtggttacct gcgccagttc ttcaacggca
    26461 acacctttca acacagccat gtattctgca acgtcacgaa ccatcgcagg ttgattctct
    26521 tttcctcgat gcggtaccgg cgcaaggtaa ggtgagtcag tttccaccag taatcgatcc
    26581 agggggacat aacgcgcagc atcgcgcagt tgctccgcat tacggaaggt cacaatgccg
    26641 gaaaaggaga tgtaaaatcc gagatccagt aatttacccg ccgtttctct gtcctctgta
    26701 aaacagtgta gtacgccacc gcaatccgtc actttttctt cgcgcagaat tgccagcgta
    26761 tcggcacggg cgtcacgggt atggacgata accggcttgt tcagttcacg accaatctgg
    26821 atatgatgga tgaaggactc ttgctgacgt actttagttt ccggtgtgta ataataatcc
    26881 agcccggttt cacccagcgc tacaacaccc tcttctgccg ccagacgacg taaatcttct
    26941 acatcgtagg gatcattctg gttgagtgga tgcacgccac aagaaaatac gacgttgtca
    27001 cgttcgccta ccagatcccg catatgtaaa taacccgtta atgttgtggc gactgccaga
    27061 caaaatttca catcgcgtgc ggcggctttc gccagaacgt catccacgtc cttatgcaaa
    27121 gattcataat ccagaccatc gagatggcag tgtgagtcga ctaaaaacat gatgtctctc
    27181 ttaaagatga ggaaccggta gcacaacgcc cggttgcagg taatgctcaa tacgcagtaa
    27241 aagatcggtg atgagaagct cgcggttgat gcctgtgaca gacattaact gttcacgaat
    27301 gtggcaaaca tcccccagta tagcctgcag gcgcgaggga gaaagatggt ttgccagttc
    27361 ggcgaccagg cccggcacat caacattggt cacctgtgca gcgccatgat ggcgttttag
    27421 cgcatccatc agcaacgttg ccagccagtg taaacgcgcc ggagcttgtt catgattaag
    27481 ggccgccagc agcgaatacc agtcgcccga tggtacgcta tatgccaacg cctgacacaa
    27541 tgtttcacga gcctgccagt tatctccctg aaacaacgcc agtgccgcgc caggcgaacc
    27601 ggcacttaag cgcaatgcgg caagtaatgc atcctgtgac attgtcactt cgcgtgaaag
    27661 ccaggtcacg gcgtactgtt ccggcggcgg cgcaagataa tgtaaccgac aacgactacg
    27721 taatgttgcc agtaaacgtt caggctcgcg ggtagccagg aaaaaccagg tttctgctgg
    27781 tggctcttca agcgttttca gcaatgcgtt agccgcggcg tcggtcagta aggcagcatc
    27841 ggttacccag acaactttcg caccacctag gcgtgcgtgc tcattcagct tttcggtgac
    27901 ctcacgtacc gcatcaatgc ccagcgtatt tttccctttt tcgggagcca gggtgtagta
    27961 atcgggatgc gtgccagcct gcatcaactg acatccacga cagtgaccgc aacttttgtg
    28021 gccctgcagt tgttggcaga gtaaataacg gctcagggcg tagattaaag catcatcgcc
    28081 catgcccggt aacgcctgaa tgagtagcgc atggtgacct cttccggcct gatagctggc
    28141 taccagtttt tcgaaatcag gtcgtaacca tggataccat ctcatgcgtc caactccttc
    28201 acccagtggg tcacggtagt gcggattgca tccatcacgg cctccagcgg ctgggtggca
    28261 tcaatggtat gaatactttt atcttgtgca gccagttcca gatagcgggc gcgggtgcga
    28321 ttaaagaaat cgaaagactc ttgctcaata cgatccagct cgccgcgcgc acgcgcgcgt
    28381 tttaagccaa cttccggggt aacatcgaga tagagcgtta agtcggggcg aaaatccccg
    28441 agaacagcat cacgcagtgt tgccagcata tgttggtcaa taccacgtcc tccgccctga
    28501 tacgcctgag tggagagatc gtggcgatcg ccaatcaccc aggtgccgtt agccagagct
    28561 ggtttgatga ccgtttctac cagttgaacg cgcgcggcat aaaacatcag aacttcggct
    28621 ttatcggtaa tgacttcatc gcctaccgat ttgatatcca gcaccaggct tcttaacttt
    28681 tcggcaagtt gcgtaccgcc aggttcccga gtgaaaacca tgtcgcggat acccagttgc
    28741 tcaagcgtct caaccaccac attacgcgcg gtagttttgc ctgcgccttc cagcccctca
    28801 atgacgatat acttactgcg catttttttc cttaagcact ttcagataat cctgcacaga
    28861 cttgttatgg ctggcaagat tggtattaaa cgtgtgacca cctttaccat cggccacaaa
    28921 atagagatac ggcgtttttg ccggatgcgc agcagccttc agcgaatccg cccccggcgt
    28981 agctatcgca cctggcggca aaccggtaat ggtataggtg ttatacgctg tcggcgtttc
    29041 caggtctgca cgagaaagtt tgccattata acgctctccc atcccgtaaa tcacggttgg
    29101 gtcggtctgc aggcgcatac caatgcgtaa acggttgata aataccgagg caacctgatc
    29161 gcgttcactg gcaacggcgg tttctttttc gataattgat gccatcgtca ccagctggtt
    29221 tttatcttta taaggcagac cgtccgcacg cccttcccag gcgctatcga ccgctttcac
    29281 cattttcttg tgcgctcgct tgagtaacgc gacatcggtg gtattggcgg tatacatcca
    29341 ggtgtctggc cagaaccaac cttcaatcca ctccgggttt tccagttcaa gtgcctgcgc
    29401 tacggtggcg tacttatcgt cactcagcgt gtgcttgata tacggagcct cacgcaattg
    29461 cttgaggtag tcgctcagac gcatcccttc taccagtcgc agcgggaact gtgcttcttt
    29521 accgctttcc agcaatttca gcatctcgcg cacggtcatc tgcggtgtaa agcggtaagt
    29581 cccggcttta aagtgagaaa gatccggttc gatacgcagc aaccattgaa aaacccgtgg
    29641 gcgattgatg atcttatcgg cataaagctg ttcaccaagc gccagacgtc cggtccctgg
    29701 cttcagggta aatatcgtct cttctttgat aagcaatttg ctgtcggcaa gatggcgaac
    29761 cttccagacg cccacaccag cggcgatacc cagtaccacc agcaataaca agataatcaa
    29821 taacactttt ttcatgacta attcgggcgc tcacaaagtg gggctaaata ttcatataac
    29881 gttgctgacg aaaaggagac atcgccacag gcacgtacgg gcatcactgg cattaacgca
    29941 ttacaaataa ccatctcatc tgcctgcaac gcctcttcca gagaggcttg cacttcgaca
    30001 agctgataag aggattgtgc cagcaaacgg atacagaatt gtcgcataat gccgttaaca
    30061 cctgcctgat ccagtcgcgg cgtataaact acattgccct tccgccagaa caaattagcc
    30121 gcacagcatt ccgtaaccca cccttcgctg tcaaggacca gcgcctcatc agcgtttgtc
    30181 tgctcaagat gagagcggat caatacttgc tcaagccgat taagatgttt aatacctgca
    30241 agatggggat tgcgccccag ccgcaccggg cttagcgcca acgtcatccc ttcgttacgc
    30301 aaacggtcgt aatgtgcagg ataaaccgta atggagagaa tccgcgttgc cggtccactg
    30361 ttcaatgtgc tgtaccctcg cccgccacta ccgcgactga tcacgacttt cagcacacca
    30421 ttttgctgtt ctgctgccag cgttttcatc tcttgttcaa gctgaggcca gaagtcacag
    30481 aaaatcatca accgctgaca agcatcctgt agtcgctgga tatgcgccga taacaaactg
    30541 actttaccgt cgataactct ggcggtggta aaacaaccat caccaaactg cgttgcccga
    30601 tcgcttactg ccagcgattc ctgcttatga ccgttaatta agaacatacc ggctccttat
    30661 cagagaattg ttagtgtggc agcatgttca ctacggaaca agtcggaata aaagctaaga
    30721 aaaaaggccc gcaagcggac cttttatatg ggtgggaaat gacaacttag atctttttaa
    30781 agatcaaaga accattagtg ccaccgaagc cgaaggagtt acacagcgtg tattccattc
    30841 cgctgacctg acgtgcttca tgcggtacga aatccagatc gcaaccttca tccaggttat
    30901 ccaggttgat ggttggcgga acagcctgat cgcgcagcgc caggatggag tagatagact
    30961 ctactgcccc cgccgcacct aacaggtgac cggtcataga tttcgtggag cttaccaaca
    31021 cacggcttgc agcttcaccg aagatggctt tcaccgcctg cgcttcagct ttatcgccag
    31081 ccggcgtaga agtaccgtgc gcgttaacgt agccaatctg actcgcttca atgcctgcat
    31141 cacgcagagc atttgccatt gccagagctg cgcctgcgcc attttctggc ggtgacgtca
    31201 tatgataagc atcgctgctc ataccaaagc cgacgagttc agcgtaaatt ttcgcaccgc
    31261 gttttttcgc gtgttcgtac tcttctagta ccagcatacc ggcaccatcg cccagtacga
    31321 agccatcacg ctctttatcc cacgggcggc tcgccgcttg cgggttatca ttgcgggtag
    31381 ataatgcacg tgccgcgcca aaaccaccaa cgcccagcgg cgtactggct ttctctgcgc
    31441 cacctgcaac catcacgtca gcatcgccat acgcgataat acgcgcagca tgaccaatgt
    31501 tgtgcacgcc ggaagtacag gcggtcgcga tagagatgct tgggccacgc aggccataca
    31561 tgatagtcag atgacctgcc accatgttca caatcgttga cggaacgaag aatgggctga
    31621 tcttacgtgg accaccgttc atcagagatg tgtggttttc ttcgatcagt ccgaggccgc
    31681 caatcccgga gccaattgcg gcaccaatgc gggttgcgtt ctcttccgtt atttcaaggc
    31741 cagaatcctg catggcctga acgccagcga caattccata ttgaatgaag gcatccatct
    31801 tgcgctgttc tttgcgcgag ataatgtcct cacagttaaa atcctttact aagccagcaa
    31861 atttcgttgc ataggcgcta gtatcgaaat ggtcgattag gctgatgcca ctctgaccgg
    31921 caagcagagc tttccaggta gactctacgg tattgccgac aggagacaac atgcccagtc
    31981 cggtcacaac tacacgacgc ttagacacgt ttgtcctcca gggagggaaa aaatgattct
    32041 agtgggacaa aaagataaaa ctcaggcggt cgaacgaccg cctggagatg ttcacttacg
    32101 cctggtggcc gttgatgtaa tcaatggcag cctgaacggt ggtgattttc tcagcttctt
    32161 cgtccggaat ctcagtatca aactcttctt ccagagccat taccagctca acggtgtcaa
    32221 gagaatccgc gcccaggtct tcaacgaaag aagcattgtt ggtaacttct tcctgcttaa
    32281 cgcccagctg ttcgccgata attttcttaa cgcgttcttc gatagtgctc atactcttaa
    32341 atttcctatc aaaactcgct ttcgcgatgg ttttcgtagt gtataaaatg ttgaaaaatt
    32401 tgcaactaaa tcccggcagg tcttaccacg attttacgtt attttgaggc cttacccccc
    32461 aataacgcaa atcattttgc actaattatt actcataacc acgcagactg cgcgcaacat
    32521 gagcattttg tgcaaatcgc ggtcagacca tgtacatccc gccgttcaca tgcaaagttt
    32581 cacccgtgat gtaagctgct tcgtcggatg ccaggaatgc aaccgcgttg gcgatttcct
    32641 gtgcgccgcc gaggcgaccc gcaggaacct gcgccaggat acccgcacgc tggtcatcgc
    32701 tcagcgcacg tgtcatgtcc gtttcaataa agcccggagc aacaacgttt acagtaatac
    32761 cgcgtgacgc aacttcgcgc gccagtgatt tactgaagcc gatcaagccc gctttcgccg
    32821 cagcgtagtt ggcctgaccg ccatttccca tggtaccaac cacagaaccg atagtgataa
    32881 tacgaccatg acgctttttc atcatagcgc gcattaccgc ttttgacaga cggaaaacag
    32941 atgaaaggtt ggtttcgata atatcgttcc actcttcatc tttcattcgc attaacaggt
    33001 tatcacgagt gataccggca ttattgacca ggatatccac ttcaccaaat tctgcgcgaa
    33061 ttttttccag aacagattcg atagatgccg ggtcggtcac attcaacatc agacctttgc
    33121 cgttagcacc taaataatca ctgatcgcct gagcgccatt ttcactggtc gcagtgccaa
    33181 taactttcgc gccacgggct gcgagcgttt cagcaattgc gcggccaatt ccgcggcttg
    33241 caccggttac cagtgcgatt tttccttcaa aattcatgat tttcctcttt taaagctcga
    33301 gcgccgctgc catcgctgaa ggttcgttca gcgccgaggc ggtcagggtg tcgacaatgc
    33361 gtttcgtcag gccagttagc actttgcccg ggccgacttc atagagatgt tctacgcctt
    33421 gcgctgccat gtactcaaca gacttcgtcc actgaaccgg gttatacaac tgacgtacca
    33481 gtgcgtcacg aatggcatca ccattggttt cgcatttcac atcaacgtta ttcacaacag
    33541 gaactgttgg tgcgttaaag gtgattttcg ctaattctac tgccagtttg tcggctgctg
    33601 gtttcatcag cgcacagtga gacggtacgc tcactggtaa cggcagcgcg cgttttgcgc
    33661 ccgcagcttt acaggcagcg ccagcacgct caaccgcctc tttatgaccg gcaataacca
    33721 cctgtcccgg agagttaaag tttaccggag aaacgacctg accttctgca gcttcttcac
    33781 acgctttcgc aatagacgca tcatccagac cgatgattgc cgccatagcg cccgtgcctt
    33841 ctggtacggc ttcttgcatg aacttgccgc gcatctcaac cagacgcacc gcatcagcga
    33901 aatcaatcac gccagcgcaa accaacgcgg agtattcccc caggctgtga ccggccatca
    33961 ttgccggtgc tttaccgccc tgctgctgcc atacgcgata cagcgcaaca gatgcagtca
    34021 acagcgctgg ctgggtttgc caggttttat tcagttcttc agctggcccc tgctgggtca
    34081 gcgcccacag gtcgtagccc agcgccgcag aagcttcagc aaacgtttct tcgacaattg
    34141 gatagctcgc cgccatatca gccagcattc caacggtttg agaaccctgt ccagggaaca
    34201 caaatgcaaa ttgcgtcatg ttttaatcct tatcctagaa acgaaccagc gcggagcccc
    34261 aggtgaatcc accgccaaag gcttcaagca gaaccaactg ccccggctta atgcgcccgt
    34321 cgcgtacagc ttcatccagc gcgcacggga cagaggccgc agaggtatta ccgtggcgat
    34381 ccagcgtcac cacgacattg tccatagaca taccgagttt tttcgccgtt gcactgataa
    34441 tacgcaggtt agcctgatgc ggaaccagcc agtccagttg agaacggtca agattattcg
    34501 ccgccagcgt ctcatcaacg atgtgcgcca gttccgttac cgcaaccttg aagacttcgt
    34561 tgcccgccat cgtcagatga attgaattct ctggattcac gcggtcggcg tttggcagcg
    34621 tcagcaattc accataacta ccgtcggcat gcagatgggt ggagatgatt cccggctctt
    34681 cagaggcagc cagcaccgca gcgcccgcgc catcgccaaa aataataata gtcccacgat
    34741 ctgttggatc gcaggtgcgc gccagtacat cggaaccgac gaccagagca tacttcaccg
    34801 ccccagattt cacgtattga tcggctacgc ttaatgcata ggtgaaacct gcgcaggctg
    34861 ctgcaacgtc aaatgccggg caacctttaa tgcccaacat gctttgaatc tgacaagctg
    34921 cgctcgggaa agcgtgcgta gcagaagtcg ttgccacaac gatcaggcca atctggtctt
    34981 tctcaatgcc cgccatctca attgcgcgtg tcgccgcttc aaagcccatg gttgaaacgg
    35041 tttcgtttgg cgcggcaatg tggcgttcgc ggataccggt acgagtgaca atccactcgt
    35101 cagaggtgtc caccattttt tccaaatcgg cgtttgtccg cacttgttcg ggcagatagc
    35161 tgccagtacc aataatcttc gtatacatgt acgctcagtc acttttcggt tatataccgt
    35221 cacttgcaaa ctgcgagttc gctggcagcg tcctgctacc gcagagttcc gcttttgcca
    35281 ccgtccagca gctcaaaacc agctgggtat acagattcca ggcgagcggc aattcgctga
    35341 ggaacttgtc gctgcaccgc ctgcactgcc tgttcaatcg cgaccgcaaa agctcgctga
    35401 ttggctgcac catgactttt tatcaccgtg ccgcgcaatc ctaacagaca ggcgccgtta
    35461 tactggtcgg ggttgaggtg actgaatcgc ctcgtcaggc tcttttgtag ccaacgcttt
    35521 aataacagta gccaccacga ccgttttttc ccttcaccct gagatttcag cagagaaagg
    35581 aacatcctga caacaccttc catcgtcttt aacgtgacat ttcctgtaaa gccgtcacaa
    35641 accagcacat ctgtcttgcc agttaacaac tcattggctt caagatagcc gatataattg
    35701 atagaaggga ttgttttaag caccgctgag gcatcccgaa tactgtcgag accctttact
    35761 tcttcttcac caatattgag caacgccacg cgaggattgg gaatttccac cacctcttca
    35821 gccagaactg agcccataat ggcaaattgc accaacattg tgctgtcaca atcgacgttg
    35881 gcccctaaat cgaggaccac cgttttgccc ttttgctgat gtggtaatac cgtcaccagc
    35941 gccggacgct caatcccctc caagggcttg agtaataatt ttgccagccc catcagtgcc
    36001 ccggtattac cggcactgac acaggcttgc gctcgacctt ctttcaccag ctccagggtc
    36061 atacgcattg aactcccacg actagcgcgg atagcttgcg aaggccgggc atcactggcg
    36121 ataactgact gcgcaggaat aatctgcaga cgcgaacgtt gttcaaagtc agctttagca
    36181 agtaatggcg tgatggcgtc gggattgccg actaaaagaa gagtgagttg cgaattagaa
    36241 ttcagtgcct gcaatgctgc aggcactgtc acggaagggc caaaatcccc tcccatgaca
    36301 tctaacgcca gggttagacg tgtcaaggta tcgtcgccgc ccggtttggt ctttccccag
    36361 ttgcctgggg aaaatcctca ctaagcttca tcacgcagac gcgtgattac ttagcgatga
    36421 ccttgcggcc gcggtagtaa ccgtcggcag tgatatggtg acgcaggtgt ttttcaccag
    36481 aagttttgtc tacagacagg ctggtgactg cggtcagcgc gtcatgggaa cgacgcatgc
    36541 cacgtttgga acgggttggt ttattctgtt gtacggccat ggaccttact cctcaattac
    36601 ggtttatccc cgatccaacg gggagcacca attacttacg ctttaagctg gctaatacgg
    36661 caaatgggtt tggcttttgc acttcttcag gcagttcacc aaagaccatg tccgcttcgg
    36721 acacttcaca gtgttcagaa tcatgcaccg gaactaccgg caaggcgagg atgatttcat
    36781 cttcaaccat tgcaagcaga tcgatttcac cgaattcgtt aacctcaatc ggttcatacg
    36841 cttccggcag tgcttcagcc tgttcgtctg aacgcacagg actaaaacaa tacgttgtgt
    36901 agacctgatg agtaaacggc ttcccgcaac gctgacactc gagcgttacc gtcaccttcg
    36961 catcgccgtt taacactgcg agacgttggt tatcgatagc gaacgacatg gagcattcca
    37021 catcactgtc cacactgacc acggattcgg cgacgcgctc aacctgatca ggggtataga
    37081 taccctggta atcaaggcgt ttttgagccg tacgaaccgg atcgagagtc aggggtaatt
    37141 ttaccttttg catagggcgc gcatattaac tttgtaacgt catagagtca aagaaaaagg
    37201 cagcctgtgg ttgccttttg ccaataattc gcacacattg cgggttactg ctttattttc
    37261 gttcagtgct gataacgaac atcaacctgc aaaacgaagc gcatagttta aaatggctat
    37321 catcaatacg ctatatctga tggaaaaaaa tatgcctaaa cttattttag cctccacctc
    37381 gccatggcgt cgcgctcttc tggaaaaact gcaaatctct tttgaatgtg cagcaccaga
    37441 ggtcgacgaa accccacgca gcgacgaatc accgcgacag ttggtgcttc gactggcaca
    37501 agaaaaagcg caatctctgg cgtcacgtta tccggatcat ttaattattg gttcagacca
    37561 ggtatgtgtt cttgatggcg aaatcaccgg taaaccgtta acggaagaaa atgcccgtct
    37621 gcaattacgc aaagccagcg gcaatatcgt caccttctat actggactgg cgttgtttaa
    37681 ttcggcgaat gggtatctac aaacagaagt ggagcctttt gacgtccatt tccgtcacct
    37741 gagcgaggcg gagattgata attacgtgcg taaggagcat cccctgcact gcgcgggtag
    37801 ctttaagagt gaaggatttg gcattacgct gtttgagcgt ttagagggac gtgaccctaa
    37861 cacgctggtt ggtttaccgc taatcgcgct gtgtcagatg ttacgtcggg aagggaaaaa
    37921 cccgctgatg ggatagttgt ttgcgccgga tgcggttacg tcgcatccgg caatcggtgc
    37981 aggcggcctg atgcggcgta aacgccttat caggccaacc gcccattatc aggcttatat
    38041 gcttgtatta gcgcgcgtta cgcagctttt gcaaacaacg cttcaaacct tcatccatcg
    38101 gcgcttcgat acgcatcacc tcaccggtcc ccggatgggt aaacttcaac gctgcggcgt
    38161 gcaggaacag acgatttaat cccgtgcctg cttcagtgag ctgtctgtca aattcacggt
    38221 caccgtagcg atcgtcaaag gcaatcggat gacccgcata ctgtgtatgc acacggatct
    38281 gatgagtacg tccggttacc gggctacaac gcaccagggt ggcaaatgca tagcgttctt
    38341 ccactttaaa gcgtgtttcc gacggtttgc cttcctgact gacacgcacg atacgttcgc
    38401 cgctttgcag aatatttttc aataacggcg cttgaacgct cttcacatgc gactgccact
    38461 gactgcgcac cagcgccagg taatcttttt gcattccttt ttcacgtaat tgctcatgca
    38521 gagaacgcaa cgccgagcgt tttttcgcta ccagcaacac acctgaagtg tcccggtcga
    38581 gacgatgaac cagttcaagg aaccgcgctt ccgggcgcaa cgcccgcaaa ccttcgataa
    38641 cgccgaagct taaaccactg ccgccatgta ccgccgtacc ggaaggttta ttcagcacca
    38701 ggatatgatc atcttcatat aagatgacgt ccgccagcgc cgccaccttt tgcagatgtg
    38761 gcgaaaccgc ctcatcttcc cgctcagcaa cgcgaaccgg tgggatacgc acctcatcac
    38821 ccgcttcgag tttatattca ggcttaatac gttttttgtt cacccgcact tcgcctttac
    38881 gcaaaatacg gtaaatcata ctttttggta cgcctttcaa ttgggtacgc aaaaagttgt
    38941 cgatacgttg ccccgcttcg tcagcggtga tagcaacaat ttttacggat ggagtctctg
    39001 ttttcatggt gggcgattct aattagccaa caggattcgc gccactcatt tttctatgct
    39061 tatatttagt tttacacctt attacttcac tacgtgatca ctttattgat ggttattaaa
    39121 ccaatcacca gcaag
//
LOCUS       DAJVUN010000010        38151 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.010, whole genome shotgun sequence.
ACCESSION   DAJVUN010000010 DAJVUN010000000
VERSION     DAJVUN010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 38151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38151
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.010"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(193..1772)
                     /locus_tag="OQQ76_000424"
                     /pseudo
     CDS             complement(193..1772)
                     /locus_tag="OQQ76_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000810568.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            complement(1804..2629)
                     /locus_tag="OQQ76_000425"
                     /pseudo
     CDS             complement(1804..2629)
                     /locus_tag="OQQ76_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001606056.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
     gene            complement(2887..4140)
                     /gene="amiC"
                     /locus_tag="OQQ76_000426"
     CDS             complement(2887..4140)
                     /gene="amiC"
                     /locus_tag="OQQ76_000426"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiC"
                     /protein_id="HCS1967032.1"
                     /translation="MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPA
                     SSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSAR
                     VGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED
                     YNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQI
                     ARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSG
                     SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK
                     FGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQ
                     QEVAESILAGIKAYFADGATLARRG"
     gene            4372..5703
                     /gene="argA"
                     /locus_tag="OQQ76_000427"
     CDS             4372..5703
                     /gene="argA"
                     /locus_tag="OQQ76_000427"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HCS1967033.1"
                     /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS
                     IVNDIGLLHSLGIRLVVVYGARPQIDANLAVHHHEPLYHKNIRVTDAKTLELVKQAAG
                     TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA
                     IHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD
                     GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL
                     LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI
                     DKFTIILRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS
                     GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG"
     gene            complement(5765..7591)
                     /gene="recD"
                     /locus_tag="OQQ76_000428"
     CDS             complement(5765..7591)
                     /gene="recD"
                     /locus_tag="OQQ76_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HCS1967034.1"
                     /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH
                     DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL
                     CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV
                     ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK
                     ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL
                     PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG
                     THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD
                     IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG
                     VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT
                     RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV
                     YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE"
     gene            complement(7591..11133)
                     /gene="recB"
                     /locus_tag="OQQ76_000429"
     CDS             complement(7591..11133)
                     /gene="recB"
                     /locus_tag="OQQ76_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HCS1967035.1"
                     /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL
                     GGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE
                     EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR
                     YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL
                     ASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE
                     TNSYQLPESLEKFSQRFLEDRTKAGGENPRHPLFEAIDQLLAEPLSIRDLVITRALAE
                     IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ
                     QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA
                     PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES
                     CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ
                     VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN
                     ALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER
                     RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT
                     IHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPKSVDLAEVERLAED
                     LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC
                     IEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGH
                     GIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW
                     VQEKLELGGFESQWEPMLTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEP
                     LIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE
                     DSSVYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIYLFLRGV
                     DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA"
     gene            complement(11126..14014)
                     /gene="ptrA"
                     /locus_tag="OQQ76_000430"
     CDS             complement(11126..14014)
                     /gene="ptrA"
                     /locus_tag="OQQ76_000430"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HCS1967036.1"
                     /translation="MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQY
                     QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP
                     QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE
                     RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL
                     KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG
                     IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE
                     GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL
                     ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT
                     PQNARIWYISPKEPHNKTAYFVDAPYQVDKISEQTFADWQQKAANIALSLPELNPYIP
                     DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFSSEPKADVSLILRNPKAMDSARNQ
                     VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY
                     FSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI
                     TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTQARDVQKQLGADGSEWCRNKDVVVD
                     KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG
                     YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQ
                     AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV
                     EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE"
     gene            complement(14190..17558)
                     /gene="recC"
                     /locus_tag="OQQ76_000431"
     CDS             complement(14190..17558)
                     /gene="recC"
                     /locus_tag="OQQ76_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HCS1967037.1"
                     /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ
                     WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL
                     LEHEDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLVEGLGE
                     AQAWQAPLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA
                     LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL
                     FRDSENAGQLFNSDGEQDVDNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL
                     LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR
                     LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV
                     LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD
                     DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS
                     LLMQLNIWHRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL
                     GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND
                     GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGLSIQDNS
                     ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE
                     RQSYAREWLPAASRAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN
                     FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE
                     IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWHPSLL
                     SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG
                     MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDI
                     WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS"
     gene            complement(17571..17894)
                     /locus_tag="OQQ76_000432"
     CDS             complement(17571..17894)
                     /locus_tag="OQQ76_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS1967038.1"
                     /translation="MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASR
                     NQYQQLWRHGWQQTQLRAISPPANWQVNRLQTSQAGCVSISVTLVSSGGREGEMTRLH
                     CPNRQ"
     gene            complement(17879..18286)
                     /locus_tag="OQQ76_000433"
     CDS             complement(17879..18286)
                     /locus_tag="OQQ76_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2509 family protein"
                     /protein_id="HCS1967039.1"
                     /translation="MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQS
                     LRRQAIVQSALAWGKMHSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSL
                     WRTGEVIDGNIVFSPSGWSDFCPLKERALCQLP"
     gene            complement(18283..18846)
                     /locus_tag="OQQ76_000434"
     CDS             complement(18283..18846)
                     /locus_tag="OQQ76_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1967040.1"
                     /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK
                     LALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDCIIVQWDANSNGIWDREP
                     VKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
                     TVNMRAASKSEPQTVVNASYSVTGFNL"
     gene            complement(18837..19307)
                     /locus_tag="OQQ76_000435"
     CDS             complement(18837..19307)
                     /locus_tag="OQQ76_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HCS1967041.1"
                     /translation="MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTAS
                     QARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEV
                     EMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL"
     gene            complement(19492..20286)
                     /gene="thyA"
                     /locus_tag="OQQ76_000436"
     CDS             complement(19492..20286)
                     /gene="thyA"
                     /locus_tag="OQQ76_000436"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HCS1967042.1"
                     /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL
                     VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP
                     TPDRRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS
                     CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL
                     QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI"
     gene            complement(20293..21168)
                     /gene="lgt"
                     /locus_tag="OQQ76_000437"
     CDS             complement(20293..21168)
                     /gene="lgt"
                     /locus_tag="OQQ76_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HCS1967043.1"
                     /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR
                     ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF
                     HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF
                     PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI
                     RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI
                     MMVWAYRRSPQQHVS"
     gene            complement(21319..23565)
                     /gene="ptsP"
                     /locus_tag="OQQ76_000438"
     CDS             complement(21319..23565)
                     /gene="ptsP"
                     /locus_tag="OQQ76_000438"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HCS1967044.1"
                     /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD
                     HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV
                     KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT
                     ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE
                     AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI
                     EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT
                     LAELPQDRLVGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLIVDGYRGE
                     LLVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
                     LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL
                     PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD
                     EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ
                     YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI
                     GLGYRHLSMNGRSVARVKYLLRRIDFAEAENLAQRSLEAQLATEVRHQVAAFMERRGM
                     GGLIRGGL"
     gene            complement(23578..24108)
                     /gene="rppH"
                     /locus_tag="OQQ76_000439"
     CDS             complement(23578..24108)
                     /gene="rppH"
                     /locus_tag="OQQ76_000439"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001655775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HCS1967045.1"
                     /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE
                     SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL
                     QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE
                     NTPKPQNTSAYRRKRG"
     gene            24793..25482
                     /gene="mutH"
                     /locus_tag="OQQ76_000440"
     CDS             24793..25482
                     /gene="mutH"
                     /locus_tag="OQQ76_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HCS1967046.1"
                     /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALAGLVTPENL
                     KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG
                     NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWTPNEEEDRQLREDWEE
                     LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT
                     SALLARHFLIQ"
     gene            25551..26264
                     /locus_tag="OQQ76_000441"
     CDS             25551..26264
                     /locus_tag="OQQ76_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HCS1967047.1"
                     /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ
                     RAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK
                     ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
                     VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM
                     FFSIAVESLNLIRNKKNPL"
     gene            26402..26620
                     /gene="ygdR"
                     /locus_tag="OQQ76_000442"
     CDS             26402..26620
                     /gene="ygdR"
                     /locus_tag="OQQ76_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YgdR"
                     /protein_id="HCS1967048.1"
                     /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD
                     DTGLVSYHDQQGNAMQINRDDVSQIIER"
     gene            26728..27768
                     /locus_tag="OQQ76_000443"
     CDS             26728..27768
                     /locus_tag="OQQ76_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HCS1967049.1"
                     /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI
                     NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD
                     QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
                     LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPSIVTIQNPYSLLNRSFEVG
                     LAEVSQYEGGELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAA
                     YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI
                     EAVHQVYTYPAP"
     gene            complement(27800..28993)
                     /gene="lplT"
                     /locus_tag="OQQ76_000444"
     CDS             complement(27800..28993)
                     /gene="lplT"
                     /locus_tag="OQQ76_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HCS1967050.1"
                     /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ
                     FYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP
                     FLGYTLVGVGAAAYSPAKYGILGELTTGNKLVKANGLMEASTIAAILLGSVAGGVLAD
                     WHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGET
                     RFSLVGTSLFWGAAVTLRFLLVLWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKL
                     VTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERG
                     KKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWI
                     WQRRH"
     gene            complement(28986..31145)
                     /gene="aas"
                     /locus_tag="OQQ76_000445"
     CDS             complement(28986..31145)
                     /gene="aas"
                     /locus_tag="OQQ76_000445"
                     /EC_number="2.3.1.40"
                     /EC_number="6.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acyl-ACP--phospholipid
                     O-acyltransferase/long-chain-fatty-acid--ACP ligase"
                     /protein_id="HCS1967051.1"
                     /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL
                     LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI
                     FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI
                     TLHILPPTQVAMPDASRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG
                     AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI
                     ARRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE
                     DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA
                     NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL
                     VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL
                     EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG
                     YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV
                     SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTRDKLQQYAREHGVPEL
                     AVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE"
     gene            31534..32565
                     /gene="galR"
                     /locus_tag="OQQ76_000446"
     CDS             31534..32565
                     /gene="galR"
                     /locus_tag="OQQ76_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalR"
                     /protein_id="HCS1967052.1"
                     /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS
                     YHPNANARALAQQTTETVGLIVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ
                     KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD
                     RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGE
                     PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL
                     VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL
                     EASHHATSD"
     gene            complement(32572..33834)
                     /gene="lysA"
                     /locus_tag="OQQ76_000447"
     CDS             complement(32572..33834)
                     /gene="lysA"
                     /locus_tag="OQQ76_000447"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HCS1967053.1"
                     /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK
                     QFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD
                     VIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
                     NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD
                     LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ
                     SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE
                     TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRSLL
                     PEVLFDNGQARLIRRRQTIEELLALELL"
     gene            33956..34891
                     /gene="lysR"
                     /locus_tag="OQQ76_000448"
     CDS             33956..34891
                     /gene="lysR"
                     /locus_tag="OQQ76_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator LysR"
                     /protein_id="HCS1967054.1"
                     /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK
                     VIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP
                     VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTER
                     TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR
                     RMIVETHSAASICAMVRAGVGVSVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLH
                     RPSSALVQAFSEHLQAGLPKLVTSLDAILSSATTA"
     gene            complement(34878..35570)
                     /gene="ygeA"
                     /locus_tag="OQQ76_000449"
     CDS             complement(34878..35570)
                     /gene="ygeA"
                     /locus_tag="OQQ76_000449"
                     /EC_number="5.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HCS1967055.1"
                     /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVD
                     FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL
                     HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI
                     IFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA
                     IHAEDAVAFMLS"
     gene            complement(35699..37117)
                     /gene="araE"
                     /locus_tag="OQQ76_000450"
     CDS             complement(35699..37117)
                     /gene="araE"
                     /locus_tag="OQQ76_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-proton symporter AraE"
                     /protein_id="HCS1967056.1"
                     /translation="MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIA
                     GALPFITDHFVLTSHLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLG
                     SIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLG
                     IVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVL
                     RMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNI
                     IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVM
                     ALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKC
                     RDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETK
                     NVTLEHIERKLMAGEKLRNIGI"
     gene            complement(37432..>38151)
                     /gene="kduD"
                     /locus_tag="OQQ76_000451"
     CDS             complement(37432..>38151)
                     /gene="kduD"
                     /locus_tag="OQQ76_000451"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HCS1967057.1"
                     /translation="VTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRR
                     FLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLN
                     IKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMAN
                     EWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLA
                     SSASDYVNGYTIAVDGGWLAR"
BASE COUNT         9583 a        10298 c         9197 g         9073 t
ORIGIN      
        1 gccaacgact gtaccctaaa atcgggtgtt ccagacgttt ttttaatgtt ctgatgatag
       61 cttccggtat cggaagatcc atatctgaaa tagagaatgg taatacatct tttacaccaa
      121 atctgtcttc acaaaagtcc cattgtgtgc aatatgttcc tttacgagaa attgaggtat
      181 taaaaatatc catcaacata tccccatgta attatccata tcccgacgta gggcgatgac
      241 ttttgtaccg ataatgactt gtaaggtatt ttgatcaagt ttcacaaccg caattcctcc
      301 ggcccttttt attgcagcct catctatcaa tcccatatcc gcgatagtta aacgcaaacg
      361 agttacacaa ttatccagtg atttaatatt ttctttacca cccagagcct taaccatttg
      421 ctccgctgcc tgcaactctg atttatcatg aactgggatg ttagctattg cagtttcttc
      481 gtgagcgttc agcgtgacag gactggactc ttcacggcct acagtcatca ggttaaattt
      541 gagaatggtc caacggaaca caaagtaata aatgaagaaa taagccactt caacacatac
      601 cgctaatggc catcccgttc ttgtgccacg taagacacca aagctaataa attgaatcag
      661 atcgccagta aagcccatct tcacgcccat atatggcaga accatgttag ccaatccatt
      721 cataaaggca tggaagacaa acaacagcgg gctgacaaat aagaacagaa attcaatcgg
      781 ctcgctgacg ccgccaataa ttaccgtgag cacaccggaa atcagcaatg ctttgatagc
      841 ccttctgttt tgagcatgag cagtgtgata catcgccagc gcggcgccag ccagaccata
      901 ctgaatcatc agtttgccct gctccatttt ccccgccaaa tccagcggaa tgaccgcatt
      961 ctctttgacg tatgccataa acatgttcag ggtgccgtaa tactcttcac cgccaatcac
     1021 tgccgatccg ccgattgggg taaagcggaa aactgatgtc accaagtgat ttaagccaaa
     1081 aggtatcgtc acgcgttcgg caacagcata gaagaaataa ccaacaggac cggaagttga
     1141 aatccagtga ccaatgagca tgaaaagatt gaaaaatggc ggccagataa aaggaatgat
     1201 cagaccaaat ccactcatca caatcagtgt aatgataggc acaaggcgtg ggccactata
     1261 aaaccctaat gattcaggaa tacgtaagtt aacgatcttt ttatacatgc tggcgactaa
     1321 taaccctgcc acaatcccac ccaacacgct ggtattgtag gactggatcc cgagtatgat
     1381 ggtttgccca tgtgtcgaca tttggtcagc agctaccaat aagtcgtgct gtttaagata
     1441 aaagttcgtt ccaagatgca tcgccataaa gccaattaag ccagaaaaag cgccataggc
     1501 tttatcatct ttctctttta ataatcccaa aggtatagct atcgcaaaca atacaggtaa
     1561 attaacgaag gcaaacaaac caaggctaac aataaaatca agtatggttt taattaacgg
     1621 aatagccaac actggaatga attttgccat atcatcgctg gctaaaccac ttcccagccc
     1681 taacatcata ccacatacac ttaacagagc gatgggatac ataaatgcct tcccaggctc
     1741 tgaaaaaaac tccaggattt cttttgtttc atactggtta tctcatgaaa atgttatgta
     1801 taattagtcc attaatactt tgatgcgaat agaaagatat agtttctctt ccagaatcaa
     1861 atcatattta aaagttgcgt acagatatct ttcaatttca tgaatggcac gttgtaactg
     1921 aaaatctttt tcaagaaact gctcatagat atcaccaata tttttctgtt ttattttttt
     1981 cattacataa cacacgacta gaaaaatatt taaggtgcat cataaatctg gagtagttaa
     2041 atgaacttct gtccaccctt ctgttataaa caacttcaat aagctccgtg attttttgag
     2101 acagctcaat aatccttact gattcataat caactgaatt ttcataatta tttaaaatat
     2161 gcaatgctat aaaaccaatc tcatcatccg gtagttgaac gctaaattgc tcattaatga
     2221 ttgttaatgc atcacgactt attgcatact ctgctttgta caacgctttg atttcctcaa
     2281 ggaaaacatt attaatttgt atgcctgaga cgactcggga tattgcattc gaaatgtgat
     2341 cagcaagaat cagtagtagc gatggattga gttttttttc gagattactc tccgcataat
     2401 gcactatctt ttcggcaaca aaaatatact caatacccac atgctcaatc aatttgtaga
     2461 gtttattttt ttgctcattt ctgacataaa aaatccggtt tgcaggatgc tcagggaccg
     2521 acataccata ttttttattg taaccaacgc caggcccaga aatgataacc tcctgtccgt
     2581 tcaccgatgc ctgtacacaa ttattgttca tgactttttc gatgatcatt ccatggctcc
     2641 caaaaaaaag caaggcatgt cagaagtaat aattacttca aacattgcct tgcctgattt
     2701 aacagttaca agataattaa ctaatgcgta tactttacac ggaattgtgc ttaataaaag
     2761 agatgacaga cttatttttt aagccgatat tcaaatattc gacagcagtc acaaaaccat
     2821 cgttcaacat ttatgtaaat aatatttatt caatgaaaca taaattcatt gaataaatta
     2881 aaaacatcat ccccttctcg ccagcgtcgc cccatcggca aaatacgctt taatccccgc
     2941 aagaatagac tccgcaactt cctgctggaa agttgccgtt ttcagtttac gctcttcctc
     3001 aacgttactg ataaacgccg tttcgaccag aatggaggga atatctggtg cctttagtac
     3061 ggcaaacccg gcctgttcaa cttgattttt atgcagcttg ttgattttac cgagcttatt
     3121 cagtaccgct ttaccaaact tcaggctgtc ggcaatggtc agcgactgca ccatatcgaa
     3181 catggtgtgg tcgacatagc ggtcaccgct tttgctcacg ccaccaatca agtccgaggc
     3241 gttctgggtt tgtgccagat attttgccgc agtactggtt gcacctttgg ttgagagcgc
     3301 aaacacagag gaaccgctcg gctgacgact ggtaaaggcg tcggcatgga tagagacaaa
     3361 caggtcagca cgctgttttt gggcttttgc tacgcgcact tgcaacggaa tgaagatgtc
     3421 ttcattgcgc gtcatgtaca ccttcatatt gccctctttc tcgatcagag agcgcagacg
     3481 gcgagctatt tgcaatacca cgtctttttc gcgcgttttg tatttcccca ccgcaccgga
     3541 gtcttcgccg ccgtggccag ggtcaagcat aataacaata ggacgatcgc gccctgcttt
     3601 acccggttgt ggaccacttt gtgctggcgg cacctgcttt tcgaggtcgc ctttgttgta
     3661 atcctccagc agcgccagca gcgggtcctg catatcctgt gcattggccg gatagaggtc
     3721 catcaccaga cgctctttaa acccggcgac cggcgcaagg gcaaacagct gcggttttac
     3781 gttttgcttt aattcaaaaa ccatccgtac ggtctgcggg tcaaattgcc cgacgcgcgc
     3841 cgacttgatg aacgggtcgt ctgcacgaat ttgtgccgcc atccccttga gtaccgagtt
     3901 caggtttaca tcttcgatat ccaccaccac gcgttcaggg ttactcaacg cgaactgctt
     3961 atatttcagc tgacgatttg attctaccgt cacacgggtg tagctggacg caggccagac
     4021 gcgcaccgcc acgacctggc tgaccgcagc cagactgacc tgacttacgc tcaatagcca
     4081 catggcaccc gcgccttgca gtaaacgacg acggctgatt gcagtgttgg atcctgacat
     4141 gcctctcccg agcaaaagaa atctaagctg tgtaacaagt aaacgactaa tttgaccgga
     4201 aactttagcg aaagacgcat aatctgtcat ctaataaacg gtaaacattc tttttatatt
     4261 cacggcatta ctgataaaaa agtcgctctc gcataaaatt tacacttgca ccctgcgaaa
     4321 aaacagaata aaaatacact aatttagaat aatcatgcaa aggggtgtgc cgtggtaaag
     4381 gaacgtaaaa ccgagctggt cgagggattc cgccattcgg ttccctatat caatacccac
     4441 cggggaaaaa cgtttgtcat catgctcggc ggtgaagcca ttgagcatga gaatttctcc
     4501 agtatcgtta atgatatcgg gttgttgcat agcctcggca tccgtctggt ggtggtctat
     4561 ggcgcacgtc cgcagatcga cgcaaatctg gccgtgcatc accacgaacc gctgtatcac
     4621 aagaatatac gtgtgaccga cgccaaaaca ctggaactgg tgaagcaggc tgcgggaaca
     4681 ttgcaactgg acatcactgc tcgcctgtcg atgagtctca ataacacgcc gctacagggc
     4741 gcgcatatca acgtcgtcag tggcaatttt attattgccc agccgctggg cgtcgatgac
     4801 ggcgtggatt actgccatag cgggcgtatc cggcggattg atgaagacgc gatccatcgt
     4861 caactggaca gcggtgcaat agtgctaatg gggccggtcg ctgtttcagt cactggcgag
     4921 agctttaatc tgacctcgga agagattgcc actcaactgg ccatcaaact gaaagctgag
     4981 aagatgattg gtttttgctc ttcacagggc gtcactaatg acgacggtga tattgtctca
     5041 gaacttttcc ctaacgaagc gcaagcgcgg gtagaagccc aggaagagaa aggcgattac
     5101 aactccggta cggtgcgctt tttgcgtggc gcagtgaaag cctgccgcag cggcgtgcgt
     5161 cgctgtcatt taatcagtta tcaggaagat ggcgcgctgt tgcaagagtt gttctcacgc
     5221 gacggtatcg gtacgcagat tgtgatggaa agcgccgagc agattcgtcg cgcaacaatc
     5281 aacgatattg gcggtattct ggagttgatt cgcccgctgg agcagcaagg tattctggtg
     5341 cgccgttctc gcgagcagct ggagatggaa atcgacaaat tcaccattat tctgcgcgat
     5401 aacacgacta ttgcctgcgc cgcgctctat ccgttcccgg aagagaagat tggggaaatg
     5461 gcctgtgtgg cagttcaccc ggattaccgc agttcatcac ggggcgaggt tctgctggaa
     5521 cgcattgccg ctcaggcgaa gcagagcggc ttaagcaaat tgtttgtgct gaccacgcgc
     5581 agtattcact ggttccagga acgtggattt accccggtgg atattgattt actgcccgag
     5641 agcaaaaagc agttgtacaa ctaccagcgt aaatccaaag tgttgatggc ggatttaggg
     5701 taagcgatga aaattgtcgg atgcgacatg cgtaacactc gtgcgtcgca tccggcaatt
     5761 acgtttattc ccgcgaacta aacaacgccg ccagaccact gcgccgctca gtacgagtgg
     5821 cgattgccgc acttaatata cgctcatcgg catacagcga cagacggcga cgcgcgcggg
     5881 tcaccgcggt gtataccagc tctcgcgtta ctaccggcgt gcgttggctc ggtaaaatca
     5941 acgccgcatg gtcgaactcc gatccctgcg atttatgtac cgtcatcgcc cacgtagttt
     6001 cgtgctctgg caagcgactc ggttgcacag acttaatatt gccgtccggc atcgcaaacc
     6061 agacgcgcgt cccctgcccg cgatccagtg caataccgat atcgccatta aacaacccaa
     6121 gcgcgctgtc attacgggca atcatcaccg gtcgaccttc gtaccaacga gagtgcggat
     6181 gacgatgaat tttgcgcttc tgttgcataa actgctcaat tcgctcattc agtccagcca
     6241 cgccaaacgg cccttcccgc agggcgcaca aaagttggta ctcattgaac gcctgaatga
     6301 ttaaatccgg ctcggcacgc gcttgcagca gatccagata acgtccataa cccgcaagag
     6361 cttcctcaag catcgcaata taatcttcgc cgctctgtaa aagtcgtttt tcgatatcag
     6421 taaaatcctg ctgaaaaacg gttttcactg ccgttttatc accacggttg atcgccgcag
     6481 ctaactgacc aatgccagaa tcgctgccga aacgatagct tttttgcagc aggcagagac
     6541 tgtcgcgcaa agatgccgct tctgtgccgg ttcctgccgg aacgtgagtc cccgtcaggc
     6601 ggcttagctg cctggcacgc tcggcggtaa agcccgcgtt ggcataagcg cagatatcgc
     6661 ccagcacagc cccagcctca accgaggcca gttgatcacg atcgccgaga aagatcactc
     6721 gcgcatgatc gggcaaggcg tcgatcagtc tcgacatcat aggcagatcg atcattgacg
     6781 cttcatctac caccagcaca tcaagatgca gcgggttacc ggcatgatga cgtaaacgct
     6841 ggctacccgg ctgcgcgccc agcaatcggt gcaaagtgct ggcatcttcc ggaatgcgtt
     6901 tcttttgttc atcggtcagc ggtaactgtc gcaaagcctt gccgagagat tcggttaagc
     6961 gcgcggcagc tttacccgtt ggtgcagcca gacggatacg gcagcgttcg ccgtcggcca
     7021 tttgaattaa cgctgccagc aacttcgcca cggtggtcgt tttaccggtg cctgggccgc
     7081 cggaaatcac cgagatccgc cgcgtcagcg ccactgccgc tgcaactttt tgccagttaa
     7141 tttcatcgct tactggaaaa agtttgtcca gggtttgcgc cagtagagct tcatcaacct
     7201 caatggcatg attcacctca ttgaagaagc gcgctaccgt ccgctcgtta caccacatgc
     7261 gattcaaata aagacgatcg ccacagagga tcatcggcgt gggttcatct cccctgctga
     7321 ccgcttgaga agccagcaag cattcttccc aattttgtag ctcaccgatt tcactgacac
     7381 aggtcgccaa cagcggatgc gacgcctcgt tattttccag tcgtgaaagc ggcaaacaga
     7441 cgtgtccctc tccggcatca tgacttaaca gtgccgccgc gagggtgacg gcaggatgtt
     7501 catctcccgc cacggtcagg gcaaattgca catccagcgg gcgtagctgt ttgtgctcca
     7561 cagcttccag taattgcttt tgcaatttca ttacgcctcc tccagggtca taccggcaaa
     7621 catctcatcc atcagggcaa tcaacccggc gttgggtcgg gttgtgtaaa tcccttgttg
     7681 cggatgttct ttatcaacgc cacgcaggaa cagatagata acgccgccaa agtgacgatc
     7741 atagtcgtaa tcagcaatgc gatggcgcag ataacgatgc agcgccaggg tataaagctg
     7801 atattgcaga tcatagcggt gtgcctgcat cgctgctgcc atagcctgtt gggtgtaaac
     7861 cgaactgtct tcacccagcc agttggattt atagtcgagc aggtaataac gcccttcgtg
     7921 gcggaatact aggtcgataa agccttttaa catgccgcgt acctgcatga actccagcgg
     7981 cgggcagcca gcggatagcg ggtcaaactg gcgaattagt gcatcaagct ggctggcgat
     8041 gagcggttcg ctaatcggca ggtaaaactc catctccacc tgtttatcgc ggtcggaaag
     8101 ctgactcagg ctaacaccct tttcattgag aggtgcctgg aggacagccg tgatccactc
     8161 ggtcaacatc ggttcccact gcgattcaaa gccgccgagt tccagttttt cctgtaccca
     8221 gttcgggtca accggctggg taaaatcgag gtcttcaaac aaactgtgca agaatgtccc
     8281 cggtgacgca ccgcgcggga actgatgcgg tgttaacgtc ggttcttcaa cgacgctgac
     8341 cacgcctgcg gcatcaacat ccagccgtgg catcagatcc tgagcgatac cgtgaccacg
     8401 ctgctgcaag ccggagtagc tggtgacacg ccagttatcg ccgggcaatc gttgtagtgt
     8461 cctcgcattc agttctgcag ttaaagcatc attaacctgc cagggctggt tatcaccagt
     8521 ttgtgccgtt tgccaggcaa tatcatcatc gcataacgct tcaatacagg tgcgaagccc
     8581 tgccgcatct tgcggttccc ctttttgcag caaacgcccg agcgcacttt ggtggacgtc
     8641 ggtgtcacct tttttatcgc cacgacggcg caccagcggt gcaacgccga gactgcaatg
     8701 ccaaaccgaa cgcgttagcg ccacgtaaag caaacgcaga tcttccgcca gacgttcgac
     8761 ctccgcgagg tcgacgcttt ttggcgcagc attaagatcc aaaactgcct caaacgagtg
     8821 gcgatcgtga taaaacgcct gatcctggac gcggaaattg gtaataaatg gcaaccagac
     8881 cagcggatat tccagccctt tcgatttatg gatcgtgaca atctgcacca gatgtttatc
     8941 actttcgagg cgcatttgtt ggctggaggc attactgtct ggctcgagga tatgttgcga
     9001 taaccagcgt accagcgcat gttcactttc cagctgcgtt ccggcttctt gtagcagttc
     9061 gctgatatgc aagatatcgg taagacgccg ctcaccgcct gccgttgcca gcaagttttc
     9121 tgcaatgtta cgcgccgaca tcagcgcccg cagcatcggc ataacgccac gtttgcgcca
     9181 gatttgccga taaccatcga actcttcaac taccgcatcc cacgcatgtt cgtcattatt
     9241 cagcgtttcg atatccagcg cgttcagccc catcattgac gttgccagcg cactacgcag
     9301 ggtgttctca cgttcgggcg tcatcaccgc ctgcaataac caaagcattt cctgcgcttc
     9361 cagagtttca aaaacactgt cgcggttcga aaggtaaacg gaagggattt ccagcaacgt
     9421 taaggcatcg cgcacctggg cggcctcctg gcggctgcgc accagcacac tgatgtccga
     9481 agcacgcacc ggacgcgcgt cgtcgccgtt catcagcaac gcttcgcccc gctgtccggc
     9541 ttgtagccag tcgcggattt gcgcagcaca tacctgcgcc atggtacttt gatagtcgcc
     9601 aacgccgcag ctttcgcctt ccatcagcca cattttcatc gcaggctgcg tttcaccttt
     9661 aaatacaaaa cgtaacgcct gatttttccc ggctgatttc actggaataa acggtatttc
     9721 gcgaaacatg aacgcgtcat cagtctggct gaaaagcttg ttcacactgt tcaccattcc
     9781 aggtgcggag cgccagttgg tgtctaaagt gtagtgggcg tgaacttcac tacgcgcctt
     9841 catataagtg aagatatccg caccccggaa tgcatatatg gcctgcttcg ggtcgccaat
     9901 cagcaacaat gcggtttccg gctgatggtg ccagatacgg cgaaaaattc ggtactgctg
     9961 ggggtcggta tcctgaaatt catcgatcat tgccaccggg aatcgcgtac ggatcgccgc
    10021 tgccaacacc tcaccgcttt cgctacgcag cgcggaatcg agccgactta acatgtcatc
    10081 aaaacccaat tcgccacggc ggcgtttttc acgcgctact gtttcgcgga tctcagccaa
    10141 tgcgcgggtg atcaccagat cgcggatcga caatggttct gcaagcagtt gatcgatcgc
    10201 ctcaaacagt ggatgtcgcg ggttttcccc cccggctttc gtgcgatctt ctaagaaacg
    10261 ctgggagaat ttttccagcg actccggcaa ctgataactg ttggtctctt cttctgccca
    10321 ggcgctgatc ttgtcgatcc atttagcctg attgctacgg ttaaacttgc gtcgatcaat
    10381 accagaagat tcgatcagcg catccagttc acccactgcg tcgcgccact gctgttttac
    10441 cgtagcaata cgcgccacaa tttgcgcgtg gcgggaagcc agcgtttcat catcgggcgg
    10501 cggtgctttg ataaccggcg cttcgccttg cagataacga ttaatatcgc gcagcaacgc
    10561 ctgcggccct ttccaggttt caaagacgac ctgggctatt tcacgcggca gcgggtagca
    10621 gtggcgacgc cagaaatcgg cgcaggcctg gtaacgtagc agagactcat cttcaatcag
    10681 ctgctgctca aacagcatgc cggattcaaa ggcattcagg ttgagcatgc gctggcaaaa
    10741 accgtgaata gtaaagactg ccgcttcatc catctgccgt tcggctaaca acaaccactg
    10801 cgcggcttgc gctttatcgt cgatctcttc cagcagacgt tcgtacagtg gattgtcggt
    10861 agtttcacgc agacaggcga tgcgcaactc atggatattg ctacggatac gaccacgcaa
    10921 ttctgccgtg gcagcctcgg taaaggtgac caccagcagt tcttcaacgg tcagcgggcg
    10981 gggaaaggcg gcggaaccgc ctagtccaag taacaggcgc aaatagagcg ccgcaatcgt
    11041 aaaggttttg cctgtgccgg cagaggcttc aatcaggcgc tcaccctgta agggcaagcg
    11101 caaaggatct agtgtctcgg cgacatcact cattcttttc actcatcagg ggcattgttt
    11161 gctgcaacgc gctgacgttc tcccacactt tccagccttc agggtgtaca tattcggctt
    11221 tcccgttctg gctgccggaa atctgcgaca gaatagccat gccttgcggc tcgaccaccg
    11281 cctgatggaa gaaatcagca agtttttgcg gcgtcagcag ttttatctgg gccacgattt
    11341 tatcacgcga atcgaagcgc atattgccgc gatcgaaatc tttacttaac ttcgatgctt
    11401 cttcgccgag cgtttgcggt gcctgcagca tctgggtaat taccgcctgc tggatttgcg
    11461 caaactcatc tggcttcatc gctcgcaatt ttgcctctgc ggttgggaaa aacgccttgt
    11521 aacgctccca caagaatgaa ggctgtttat cattgctttg caaaaggaag cccatgcccc
    11581 actgacgccc cacgctcatt ggaaacgcaa acacggcata gcccaattgt tcttcggtac
    11641 gcaactgatt gtagaaccac ggctgtacga tctgccccaa cagagagcta taggctgagc
    11701 tggtgtattc atcgtagcca gtcggtacaa ataccgctgc cagtgcggag tcggtgctgt
    11761 taccggcttt ttcaaagatg acggattgtt ttttatcgac cactacatct ttgtttcgac
    11821 accactctga accatcagcg cccaactgtt tttgcacatc gcgtgcctgc gttgttgcct
    11881 gggcctcggt catgttgccg ataaccataa actctggtcg agcccctgat tttaaggcgt
    11941 cgcgataggc cagcacctct ttcaacgtaa tggagggcaa aattttacgc cgttcatctc
    12001 gcgagaagta cggcacttgc gagagcatct gcgcgggcat aatcgcctgc tcaaacgctt
    12061 tacccttttc tgcggaatcc atcatctggt tataccaaga cttcgcctgc tcaagctgat
    12121 cttccgtagc ggtatagcta aagtacccct cgagcaatgc ctggaacagc tgcggcagac
    12181 gctgggtgta accattagca ttaaccataa ggccgttgtt agcgttggtg gaaaaactta
    12241 tgccaccaac cgacgcctgg ttgcttaact gatcaagcgc cagccctgcg agataatcat
    12301 tgagcgcaaa catcacctga ttgcgggcgc tgtccatggc tttcggatta cgcaaaatca
    12361 ggctgacatc agctttgggt tcgctggaaa aataacggct tggcgcatac accacgcgca
    12421 gattcgactc atcaacaatc agctctggat ggtcatattt cttctctgac ttaatcagcg
    12481 agaaatcgtc aggaatatag gggttaagct ccggtaagga gagcgcaata ttggcagctt
    12541 tttgctgcca gtcagcgaaa gtttgttcgc tgattttatc gacctgatac ggcgcatcga
    12601 caaaataagc cgttttattg tgcggctctt tcgggctgat ataccagata cgcgcattct
    12661 gcggcgtcat catcgccaga cgttctttta ctgctttagc atcgtaccga tcggcaatat
    12721 tgactgcatc cagcgtatgc tcaaccggaa cgcgaatcat ggtatctgcc agccattcga
    12781 cgtaatccat atcacgggtg atcgacggat aacggaagtc gatatccagc acattcgcca
    12841 gttcatcgaa gtattgttta tcaatgcctt tttcacgtaa cagattgaga tagctaaaaa
    12901 ttgccgccac aacctgatcg cgattagcca ggcctttatc ggttaaagac gcagagatcg
    12961 ctaatacgcc gctgttgccg ttgacgatag gatcggagtt ggcgctaatg ccctcaacta
    13021 atccctgctt ttgcagccag tcggaaagtg tacctgggct gcgattacca atcagatagg
    13081 taatcaattc atccgtttta ctacggaact tcgctgagtt gttatcgatg cgaaactcaa
    13141 cgcgcagaac tttacgcggc agtgccggga cgtaatgaat gataatgccc ttttgcgcgt
    13201 cggtgactac cggcacggtg atttccggtt ttttgctctc tttgttcggc acgcgaccaa
    13261 aggtgtccgc cgccattttt gccaactccg gcagcggttt attgctgtaa ataaccgcct
    13321 tcatcagatt ggcggaatag tacttctcgt ggaaatcttt cagcgcctgc tgcaccggat
    13381 taccaggttt atcgcttaaa gtttcgaggt taccaccaga aaactttgaa ccggggtgtg
    13441 ccgggttaat ggtttctgcg ctgacctgtg ccatgcgcat cccgtcacgc gtacgcgcca
    13501 tggttaattc agcgttcacc gcattacgct cacgttcggc atatttcttg tcgagcaaag
    13561 gttcagcaat agcatcggcc aggcggtcta ccgcaccagg caaggcgtcg ttctcaactt
    13621 ccagatagaa agccgtgcga tacggcgcag tgctggcatt gtgactaccg ccgtgcattt
    13681 tgagatattc ggccagactg tcagcctgcg ggtacttttt cgaccccatc agactcatat
    13741 gttcaaggta atgtgccagc ccctggtacg cctcgggatc ttccagcgac ccaacgggca
    13801 ccaccagcgc cgagagcgat ttaactgcct gcggatcaga aaccagcaag accaccatac
    13861 cgttatccag acgtatagcc tgatactggc ggttatcttt atcactttta cggatggttt
    13921 cctgaatcgg ctgccatccc gtttctgcct gacttaaggg tgcccaaagg gcaactaaca
    13981 acaataatgc tttgaaccaa gtgctgcggg gcattcacgg acctcataat caacttaatt
    14041 ttctgtccag attcaacacg ttaacgcaaa tcatctgcca gaatttaatc ttgtgctgca
    14101 cgagtcagcc tatgtttata taaccatcag tccgtgactg gtgcgcatca taaagtaagc
    14161 ggatagattg cgcaattttt atacagcact catgactgat taaagcgaaa cagcggtaac
    14221 aggaaacgtt gcgactgttc aacgatggcc tccattgtct ctggtgttaa ttgccgccag
    14281 agcctttgat accagatatc atcaccttcg ccacgcacca tcatgttgcc ttcgtaagcc
    14341 tgaaggaatt tcgtacgggc tttttgcaac gtggaatcgt catccagcat ggcatcgttt
    14401 tgcgcgtcat aacaggtttt tagccacgcg ccgccacttt caggtaacac cagcaatggc
    14461 gcggacatcc cttcacgata cccctcaatc agttgtgaga ggtaatgcaa agcctgttcg
    14521 gctgcaagcg gcggaaaacg ccactcgccg tctttgcgta gaaaaaggcg actttcacca
    14581 ttaccaccgc tggcacagta gacaaggtgt tccagccaaa gttgcattcc ctgcgccaca
    14641 cttaataaag agggatgcca gcgcaacagg ccatccggct gcacctgcgg caaccagcca
    14701 gttatctgca caccgttgca ggcgagatca atttccatac tctgccccgg ctggcgacag
    14761 gcaatgactc tgtcggcaag ctgctgcatc tcctggcact gagtttccca gaaaatttca
    14821 ccaaaagcgc catacggtaa atcccctgcc gcccggaagc gacggaacaa gcgttcggca
    14881 tcatcctgct caaccagtgc attcaataac tgctgattga tttgataacg gctaagccct
    14941 tccagaataa atggctcggt gtcggggatt tcgctgtctt cggtacggaa gttcacctgc
    15001 aaacgcatct ggaaaaatgc ccgcaccgga tgtgcccaga atcgttgtag cgtttccagc
    15061 ggcacggttt ccggtaaggt aaacggcagc ggctgaacaa attcagaatg tgctttacca
    15121 gcccggctgg ccgcaggtag ccattcacga gcatagcttt gtcgttcgcc tggctggtag
    15181 ttttgtggat caaacggcat ccgggtatgg aggcaggtaa gatgcgcttt tacccttgcc
    15241 tcgctttcat cacagttgag cgcttcatcg cccggtagat aatgactttg cccgatgtag
    15301 tcgatcagtt cctgcaccag taccgacggg aaacgttcac tgttatcctg aatggaaagc
    15361 ccgatataac tgatatagag tttttgctgc gcggaaatta acgcttccag gaacaggtag
    15421 cggtcgtcat cgcgacggct acggtcgcca cgcttcggtt tctggctcat caggtcaaag
    15481 cccaatggcg caagctgacg tggataaacg ccgtcgttca ttcccagcag gcaaaccact
    15541 ttgaacggaa ttgaacgcat tggcatcaga gtacaaatgt taaccggtcc ggcgagaaaa
    15601 cgctggctga tacgttcttg atccagacgc tgtgccagtt catcacgcaa tagtgacagc
    15661 ggcaccgcgt cgccatactg cgcacctaaa ccttcggcga taatcgcctg ccattgttgt
    15721 tcgatcagcg tcatcgccgc ttcggtttcc gcatccggca ggaagaaggc gttgagcata
    15781 tcgcgacaaa ccggcaacca ctcttctagc ggacgctcct gtgccagccc gcgatgccag
    15841 atgtttagct gcattagcag tgaagccaga tgccccacca gttctgcaat taagccgctc
    15901 gactcatcat aaggtagaac cgattgccac tcgccctgcg cgctctccat cgcgtagccc
    15961 agcaacatac gcgtcaggcc aaatcgccag gtgtgttgtc cggtggcggg gagttccagc
    16021 tcgcgaacgt tgtcgtcatc tatcccccaa cgaatgccgg attcgttgac ccactggcgt
    16081 aaataacgca gcccttcttc ggtgatgtca aaccgcgccg ccagcaccgg cacatccagt
    16141 aatgccagca cgtcttccga cacaaagcgg ctgtctggca acgataacag gctgataaac
    16201 gcttccagta ccggatgcga ctgccgcgcc cgacggtcgg aaatggcgta aggcaggtaa
    16261 cgatccgcag gtgcgctacc aaacacagcc tgaataaacg gactgtagct gtcgatatca
    16321 gccaccatca cgatgatgtc gcgcggagta agtgtcgggt cttcttccag catcgccagc
    16381 aggcgatcgt gcaaaacttc aacttcacgc tgcgggctat ggcaaacgtg gaaggtgata
    16441 ctgctatcca gtggatcaag cgggcgtttg ttatcgctac gggaaaactc ttcgatgttc
    16501 acaccagcaa cggcacggtt ttccagttcc agaatgtcag actgaatgtt atgcagcagg
    16561 ttatctggcg tgacatcgac aaaggcgtcc agctcctggc tgctctccag gtcagaaagg
    16621 agataaatgt agtcgcgccc aagcttcccc catgaggcca gcagcgggtt gtcgacatcc
    16681 tgttcaccat cgctgttaaa gagctgtccg gcattttcgc tatcgcgaaa tagcggcaat
    16741 tcgcgatctt caaaactgtg tcgacgctga cgagtcagca gtttcgccag ataagcagga
    16801 tctttaatat cgccccagta ataacggcag gggttggtaa acaggagatg gatttcaata
    16861 tgtttaccca gcgcctggag cgcctggaga taaacaggcg gtaacgcgga aataccgcat
    16921 ataaagacgc gcgaaggtaa ccccggcggg caggtcgtcg cggactccag cgtttcgata
    16981 aagcgctgat agagattcgc gcggtgccag cgcggttgtc cgagttcatg ggtatattcc
    17041 accagcgcct tccacaacgg cgcttgccag gcctgtgctt ctcccagccc ttcaaccaaa
    17101 tgtcctgttt cccattgtgc cagccactcc gggcgataga ccagatactg gtcaaacagg
    17161 tccgccgctt ttgaggaaag ctggaacagt tttcgcttgt cgctatcgtc agtcagataa
    17221 tgccgcaaca gggtaaagtc ttcgtgctcc aacagttgtg gcagcagagt catcagtttc
    17281 cagctcatgc tctgtttgtt aaaggcgctc tctttgggga tctccggtaa cacccggacg
    17341 aacatatccc agataaagct cgcaggcagc ggaaaatcaa tgtttgccgc aataccaaac
    17401 ttttgcgaca gggtcatttg cagccactgt gccataccgg tactttgcac cagaatcatc
    17461 tctggttcga aaggatcgtc cagccgttcg cgttcgacaa taaactccat caacgcttcc
    17521 agcacgtcca gacgattgga atggtagacc cttaacatag cggctcctga ctactgacga
    17581 ttcgggcaat gcaggcgggt catctcgcct tctctgcccc cggatgaaac tagcgtaacg
    17641 ctgatgctga cacatcccgc ctgcgatgtc tgcaatcggt tgacctgcca gttagctggt
    17701 ggcgaaatcg cgcgcagttg cgtttgctgc cagccatgcc gccagagctg ttggtactgg
    17761 tttctgctgg caagactgtt cattaatgtt cgctggaaac ccgataacgc agtgacaatc
    17821 atcaccatca acaccatcgc caacattacc tccggcaggc taaagccttg ttgattcttc
    17881 agggaagctg acataacgcc ctctctttca gcggacaaaa atcgctccag ccgcttggcg
    17941 aaaaaacaat gtttccatca atgacttcgc ctgttcgcca caacgaaacg ccttcataac
    18001 cggcaatcaa taaggcttca ttatctgcca gtaaacgcaa acaaacctgg gcatcggttt
    18061 cagcgtactg cgagcactga actgctggct gcgtctgcca ggagtgcatt tttccccacg
    18121 ccagcgccga ctgaacgatg gcctggcggc gcaatgactg actttccatg ctcacgcgag
    18181 aggcaaaact gcgatcctgt tggctcattc cttgtaatag caaactaccc aaaaccagca
    18241 gcatcaggac cagagccagt gacgaaacac ccttttcgcg gttcacaggt tgaatcctgt
    18301 cacgctatag ctggcattca ccacggtttg cggttcagac ttactggcag cacgcatatt
    18361 aaccgtcaac accggcgaga agccgctgac atcctgacgt acgacctgaa aagtgtcgat
    18421 aatgatggca tccggattag tgactttatc ccagccctta ccttcacagg atgtcgcacc
    18481 gcgtagcgtt tccagcacat gctccttcag acgaaatcca atctggtcgg actcttttac
    18541 cggttcgcga tcccagatac cgttactgtt cgcatcccac tgcacaatga tacagtcacc
    18601 ctgtccgaca atttccagcc cttcgccggt acagatgcca tgacaataac ccgccctctg
    18661 gagatgcttc gcgacggtaa atacccgcag ccagatttca tcttccagcg ccagcttacg
    18721 ggtgctcgtt aaactttcac gctgtaacgc aggcagaaag cgtgcagccc ccagcaacaa
    18781 tacgctactg atcgccatag caatcaacac ttccagcaga gaaaaacctt gctcttttac
    18841 aggcatcctt ctgtttctcc ttgctgacaa agccggagtc ttccccacgg cgaaaccacc
    18901 agccaccact cgcccgttga gtttttgaag cgaatatgcc cggcccatgc ggtattgcgc
    18961 aggccaaaga aagcaagcga aggtgtcagg tcgctcattt cgacttcggg ccagcgtggc
    19021 acaaagacca atggtgaact gccatgacag gtattggccc cagcagcgga actcacaagg
    19081 caccataacg tcccctccct gataacgctg atactgtggt cgcggttatg ccagttggca
    19141 tcttcacgta aatagagcaa atagtcccgc gcctggctgg cggtttgcca tagccgttgc
    19201 gactgctgcc agtattgcca gccatagagt ccacttgcgc ttagcatgac caaaatcagc
    19261 atcgcgacca gcgtttcaat cagcgtataa ccacgttgtg ttttcatgcc ggcagtatgg
    19321 agcgaggaga aaaaaagacg agggccagtt tctatttctt cggcgcatct tccggactat
    19381 ttacgccgtt gcaggacgtt gcaaaatttc gggaaggtgt ctcgaagaat ttaatggagg
    19441 gtaaaaaaaa ccgacgcaca ctagcgtcgg ctctggcagg atgtttcgta attagatagc
    19501 caccggcgct ttaatgcccg gatgcggatc gtagccttca atctcaaaat cttcgaaacg
    19561 gtagtcgaag atggattcgg gtttacgttt gataatcaac ttcggcagcg gacgcggttc
    19621 gcggcttaat tgcagatgag tttgatccat atgattgctg tacaggtgcg tgtcgccccc
    19681 cgtccagaca aaatcgccca cttccagatc acactgctgc gccatcatat gcaccagtaa
    19741 cgcgtagctg gcaatgttaa acggcaggcc gaggaaaacg tcacaggagc gctgataaag
    19801 ctggcaagag agtttgccgt ctgccacata gaactggaag aacgcatggc acggtgccag
    19861 cgccatttta tccagttcgc ctacgttcca cgctgaaaca ataatgcggc gcgaatccgg
    19921 gtcgtttttc agctggttca gtaccgtagt gatctggtca atatgacgac gatccggcgt
    19981 tggccaggcg cgccactgtt taccatacac tggcccgagg tcgccgtttt catcggccca
    20041 ttcgtcccag atggtgacat tgttttcgtg tagataagca atgttagtgt cgccctgcag
    20101 aaaccacagc agttcatgga tgatggaacg caggtggcaa cgtttagttg tcaccagcgg
    20161 gaatccatcc tgcaggttaa aacgcatctg atgaccaaaa atggaaagcg ttccggttcc
    20221 ggtacggtcg tttttctgtg tgccttcgtc gagcactttt tgcatcagtt ctaaatactg
    20281 tttcatggtt cctcaggaaa cgtgttgctg tgggctgcga cgatatgccc agaccatcat
    20341 gatcacaccc gcgacaatca tcgggatgga aagaatttgt cccatgctga tgtactgcac
    20401 ccaggcacca gtaaactgcg cgtcgggctg gcggaaaaac tcaacaatga tgcgaaacgc
    20461 gccgtaacca atcaggaaca aacctgagac agctcccatt gggcgcggtt tacgaatata
    20521 caggttgagg ataataaaca gcactacacc ttccagcaac agctcgtaaa gctgtgatgg
    20581 gtggcgcggc agcacaccgt aagtatcgaa aatggattgc cactgcgggt tggtttgcag
    20641 cagcaaaata tcttctgtac gggagccagg gaacagcatg gcaaacggga agttcgggtc
    20701 aacgcggccc cacaattcac cgttaataaa gttgcccaga cgcccggcac caagaccaaa
    20761 cggaatgagt ggtgcgataa aatcagagac ctggaagaag gaacgtttag tacggcgggc
    20821 gaagataatc atcaccacga taacgccaat caggccgccg tggaaggaca tgccgccgtc
    20881 ccagacacgg aacagataca gcggatcggc cataaactgc gggaagttgt agaacagaac
    20941 ataaccaata cgtccaccga ggaagacgcc gaggaagccc gcatagagta agttttcaac
    21001 ttcatttttg gtccagccac tgcccggacg attcgcccga cgtgttgcca gccacattgc
    21061 aaaaatgaaa cccaccagat acatcaggcc gtaccagtga agcgccacgg gtcctattga
    21121 gaaaatgacc ggatcaaact ccggaaaatg cagatagcta ctggtcatct gtcaccacaa
    21181 gttcttgtta tttcgctgaa agagaacagc gattgaaatg cgcgccgcag gtttcaggcg
    21241 ctccaaaggt gcgaataata gcacaagggg acctggctgg ttgccggata ccgttaaaag
    21301 atatgtatat gatccgcgct ataaccctcc gcgaatcagt ccgcccatgc cgcggcgctc
    21361 cataaaggct gcaacctgat gacgaacttc ggtcgccagt tgcgcttcca gactacgctg
    21421 cgcaagattt tctgcttcgg caaaatcaat gcgccgcagc aggtatttta cccgcgctac
    21481 agaacgtccg ttcatagaca gatggcgata cccaagccca atgaggattg ccacgcacat
    21541 gggatcgccc gccatttcac cgcacaaacg gagatcgata ccatgtattt ccgcttcccg
    21601 ggcgatcatt gccagagctc gtaacattgc aggatgaagg ctgtcataaa tgttcgccac
    21661 ccgggtattg ttgcgatcaa cggccagaat gtattgagtc agatcgttgg tgccaacaga
    21721 gatgaaatcg acccgctttg ccagatgcgg cagcataaat accattgacg gtacttccag
    21781 catgatgccg atacgtggtt tgggaatttc gtaaccgatc atctcctcga cttcacgtcc
    21841 ggcacgttca atcaggcggc gtgcttcgtc aacttcatcg aggctggtga ccatcggcaa
    21901 cagaatattc aggttgcccg tagcggcatt agcacgcagc atcgcccgca cctggatcaa
    21961 gaagatctcc ggctgatcga gcgtaatgcg aatcccacgc caacccaggc atggattctc
    22021 ttcgctgatc ggcatgtaag gcagctgctt atctgctccg acatccagcg tacgcaaggt
    22081 gacgggttta tcattgaaca tttgcagcat cccctgatac tgcgccacct gttcttcttc
    22141 cgacgggaaa ccactttgca gcatgaatgg gatttcagtg cgataaagac cgatgccatc
    22201 aatacggctg cccagttttt cttcatgttc cgggcttaaa ccagcattga gcatgacttt
    22261 tatacgctca ccgcttttta actgcgcggg taaattgacg tcatcttccg ccagacggct
    22321 aagctcaatc tcttcactaa ttagccgctg atattcttgc agcagtaccg gctccggatc
    22381 gaccagcaat tcaccgcgat agccatcaac gatcagcgtc ctacgatgca gcaccgaagg
    22441 ctgaatatcc gcgcccatca cggtagggat ccccagcgca cgtaccatga tcgcagcatg
    22501 ggagttggct gcgccatctc gcacgacaac accgactaag cgatcctggg gcagctcagc
    22561 aagagttgtc gctgacagtt catctgccac cagaatgaaa cgttccggcc aggcgttcgg
    22621 cccttgatta gcgtcatcaa gatgaaacag caatcgctga cccagcgcac gtaaatcgcc
    22681 agcccgctct ttgagatagt tatcgcttag cgcggcaaac tgttcggcaa atttttcaat
    22741 gaccgttttt accgcccact ctgccaccga gcctttatca acctcggcaa acaattcgcg
    22801 acgcagccgg gtgtccgaaa gcaggtgcga gtaaagatcg aaaatagccg ccgtttcttt
    22861 ttgtgctccg gcggcaaagc gtttgctgta gcggcgaaac tcgtttgccg cttcttccag
    22921 cgccccggtc aatcgttcgc gttccagagc cggatccagc gttgatgcct gatacacctg
    22981 ttccattaaa ggtaacgtgg catcctgcca gccttcggca atcgccacac caggtgctgc
    23041 cggtaatgcg cggattcgcg tctggcgata ttgcccaaac aaggcagtca actgcgactg
    23101 agaaagaata gctgccatct gggtggcaag cgtcaccagg aaggattctt cactttcgtc
    23161 atactggcgc aactctcgtt gctgtaccac cagtacacca agcaactggc gacgttgaat
    23221 aattggtacg cctaaaaacg cgcggaaacg ttcttctttt acggagggga tgtatttgaa
    23281 gctggggtgc ttttgcgcat ctgcaaggtt tatcggttcc gccagcctgc caaccaggcc
    23341 gacgatccct tcatcaaacg cgagcgttac agtgcgaccg cgtggttttt tcagtccccg
    23401 ggtcgccatc aggtagtaac aacgtcgatc atgatcggcc aggtagaccg aacagacctc
    23461 ggtatccatc gcaagacaga tgtcggtaac cagaatattt aacgcctcat tcaggcgtgg
    23521 tgcgctggct accttttcga ctatttcgcg caggcgagtg agcataattg gcgtgactta
    23581 acctctttta cgtcgataag cagatgtgtt ttgtggtttt ggcgtatttt cctgcagtga
    23641 catcaccaca ctcgcgaact ctttcattac cctacggtag acatcacgtt taaatgacac
    23701 cacctgtctg accggatacc agtaacttac ccatcgccag ccgtcaaact ctggtgtact
    23761 gctggtttgc atattgattt ctgcatcgcc gctcaccagc tgcaagagaa accatttttg
    23821 tttttggccg atacaaaccg gcttcgtgtc ccaacgcacc aaacgtttcg gtaatttgta
    23881 gcgcaaccag ttacgcgttg aagcaaggat tcgaacgtct ttgcggctta atcctacttc
    23941 ttcaaacaat tcacggtaca tcgcctgctc tgcggattct ccggggttga ttccgccttg
    24001 cggaaattgc caggagtgct gaccaaatcg ccgggcccac attacctgcc cctggcgatt
    24061 acaaatcacg atacctacgt ttgggcggta gccatcgtca tcaatcaccg gactacctca
    24121 aaataaagct ttatatacga atgattgttt catactccag gaagacggta aaccactctc
    24181 tgcagggcat tacacactaa taacaattga ataactcaca gttatgtgca gagttataaa
    24241 cagaggaagg ggtggatagc cgtttttatt caccttttct gtggatagag ttgtgaagaa
    24301 ctacggaatt actacgggaa aacccggagc attctgaata agcccgatat aggcatttta
    24361 aaatattcat tatcagtcaa tgcattacat gtaatttgag taatgaaaaa gagtaattcg
    24421 tgacccaggt cacacctctc atttacgggt tggcgaaaga tcaaccaatg ccgtatttat
    24481 ccacagaatg tgccactaag ttaagcactg aaccactaaa aactggagtt tcgtcgcacg
    24541 tcaaggctgt aaatggaaac agtagtggag gtttttcaca gttatcccag ctttctgtgg
    24601 ataacatggt gtaagatcct gtttattttc agtgaccaga tttggaaaac ctattgcagt
    24661 gctgcgcaac tcgattatcg gcagcctaaa aagcaatata aatcagagaa ttgaacaaca
    24721 catgtggaaa aagttacact gcgaatattc ggcacataat tgctgtttgt tttttaacca
    24781 aggtatcatg acatgtccca acctcgccca ctgctctctc ctcccgaaac tgaagaacag
    24841 ttgttagcgc aagcacagca actttctggt tatacattgg gagaactggc ggcacttgcc
    24901 gggctggtta cgccagagaa tttaaaacgc gataagggct ggattggcgt gttactggag
    24961 atctggctag gtgccagcgc agggagtaaa cctgagcaag attttgctgc tctgggcgtg
    25021 gaacttaaaa ctatccctgt ggatagtctt ggtcgtccgc tggaaacaac attcgtttgt
    25081 gttgccccgt taacgggtaa tagcggggtg acctgggaaa ccagccacgt gcgccacaag
    25141 ctcaaacgcg tactgtggat accggttgaa ggcgagcgca gcatcccgct ggcgcagcgt
    25201 cgcgtaggat ccccgttgct gtggaccccg aatgaagagg aagaccgaca gctacgcgaa
    25261 gactgggaag aattaatgga tatgattgtt ctcggtcagg ttgagcggat caccgctcgt
    25321 cacggggaat atttacagat aagaccgaaa gcagcgaatg cgaaagcgct taccgaagcc
    25381 attggtgccc ggggcgaacg gattctgacg ctgccacgcg gcttttattt gaagaagaat
    25441 ttcaccagtg cactactggc ccgtcatttt ctgatccagt agccatcgct ttgacctgcc
    25501 gctttccggg catataatta ccgcttcatt tttttggcag ggctttttag atgttatttg
    25561 catggataac cgatcctaac gcctggcttg cgctcggtac gctgacgctg ctggagatcg
    25621 ttcttgggat cgacaatatt attttccttt ctctggtggt ggcaaagctt cccacagcac
    25681 aacgtgctca tgcgcgccgt ctggggttgg cgggagccat ggttatgcgt ctggcgctgc
    25741 tggcatcaat cgcctgggtt acgcgcctga caaatccgct ttttacaata ttcagtcagg
    25801 aaatttctgc ccgtgatttg attctgcttc tgggtggctt gttccttatc tggaaagcca
    25861 gcaaggaaat ccacgaatcc attgaaggtg aagaagaagg gctgaaaaca cgcgtttcat
    25921 cattcctcgg cgctatcgtg cagattatgc tgctggatat tatctttagc ctcgactcgg
    25981 tgattacggc tgtgggtctg tcagatcacc tgtttattat gatggcagcc gtggtgattg
    26041 ccgtaggcgt gatgatgttc gccgcgcgct cgattggtga ttttgtcgaa cgccatcctt
    26101 cggtaaaaat gctggcgctc tctttcctga ttctggtggg ctttaccctg attctggaaa
    26161 gtttcgacat ccacgtaccg aaaggttaca tctacttcgc gatgttcttc tctattgcgg
    26221 ttgaaagcct caacttgatt cgcaacaaaa agaatccgct ctgatactcc gtacgctctc
    26281 ctgcgggagg gcgtactcac tccttttacc ctcacagttt aagattttcc tgctttcaag
    26341 atatataacg tcggtttata aacagactat tatcataggt aggccaaatg aggataaccg
    26401 gatgaaaaaa tgggcagtaa taatttctgc agtcggactg gcgtttgctg tttccgggtg
    26461 ttccagtgat tacgtcatgg cgaccaaaga tggccgtatg attttgaccg atggaaaacc
    26521 tgaaattgat gatgataccg ggctggtgag ttatcacgat cagcaaggta acgcgatgca
    26581 aattaaccgt gatgatgttt cgcaaattat tgaacgttaa caaataaggt cagcatccgg
    26641 ctggccttaa gatttttctc tttccctttt cccttccctc tgccattttt atattcctta
    26701 tgtcgtgatt ataaaaagga aacggctatg caatatcacc gtatacccca cagttcgctg
    26761 gaagtcagca cgctggggct tggcacgatg acgtttggtg aacagaacag cgaagccgac
    26821 gcccacgcac aactcgacta tgccgtcgct cagggcatta accttatcga cgttgccgaa
    26881 atgtacccag tacctccgcg ccccgaaacg caagggttaa ccgaaaccta cgtcggcaac
    26941 tggctggcga aacatggcag ccgcgaaaag ttaattatcg cctccaaagt gagcggaccg
    27001 tcgcgcaata atgacaaggg catccgcccg gatcaggcgc tggatcggaa gaatatccgc
    27061 gaagcgctgc atgacagcct caagcgccta cagactgatt acctcgatct ttatcaggtg
    27121 cactggccgc agcgcccgac caactgcttc ggcaaactcg gttatagctg gacggattct
    27181 gcgcctgcgg tttcgctgct ggatacgctg gacgcactgg cagagtacca acgcgcggga
    27241 aaaattcgtt atatcggcgt gtcgaacgaa actgcatttg gcgtaatgcg ctacctgcat
    27301 ctggcggaca aacacgatct gccgagtatt gtcaccattc agaaccctta cagtctgtta
    27361 aaccgcagtt ttgaagtagg tctggcagaa gtcagccagt atgaaggggg cgaactgctg
    27421 gcctattcat gcctgggttt cggcacgctg accgggaaat atctcaatgg tgcaaaaccc
    27481 gctggcgcac gtaatacgct ctttagtcgg ttcacccgct atagcggtga gcaaacgcaa
    27541 aaagccgtcg cggcgtatgt tgatatcgcc agacgtcatg gcctggaccc tgctcagatg
    27601 gcgctcgcgt ttgtacgccg tcaaccgttt gttgccagca ctctgctggg cgcaaccacg
    27661 atggatcagc tgaaaactaa catcgaaagt ttgcatctgg agttaagcga agacgtatta
    27721 gctgaaattg aagcggtgca tcaggtttat acttatccgg caccataaga ttaacgccgg
    27781 ttaaaaccgg cgttaaatat taatgacggc gctgccagat ccacagcgcc gttattgcca
    27841 gcgcaaacag cgcaccgaag ccaatgccaa tgggcacgac cgggatgcct accattaccg
    27901 ccagcgagta aatgcccagc atcaacaaca tggcgctgtt ttcgccaagg ttttgtactg
    27961 caatcgcatt ccccgccccg acgctttttt taccccgctc ctgtagcaac gcattgagcg
    28021 gaacgacaaa aaagcccccc atcacgccaa tcagcatcaa caaggcatag gctggcagca
    28081 gctcgtgttg cagggaaaaa atcagtacca ccacgccaat caaaatcccg gctggcatac
    28141 agcgtgacac ggtttccagc gtaactaact tcgctgccgc acctgcgcca accacgatac
    28201 caatcgctac catcgcgttg agataggtgg gcgtagcgtt atcggtaatg cccagcgcca
    28261 ccggtaccca cagcaccaac aggaaacgca gcgtgacagc cgctccccag aataaactgg
    28321 tgcccaccag cgaaaaacgc gtttcaccat tgcgccatag cgaggtgcag gcattcagga
    28381 aactgcgggt catgttgatg agattccagg actgccccgg acgcgccgcc gccagtttgg
    28441 gaatgtagat attggcaacg accgcaccac cgtaggccag tgcgcatgcg gccagggcga
    28501 cgaggacatg ccagtcagcc agcacaccac cggctacgga accgagcaaa atcgccgcta
    28561 tggtagaagc ttccattaaa ccgttagctt tcactaactt attacccgtg gttaattcgc
    28621 cgagaatacc gtatttcgcc ggtgaatagg ctgcagcacc aacccccacc agcgtatagc
    28681 cgagaaacgg attgatacca aagcagatac tggctgcgcc cagcagcttc aggccgttgg
    28741 caaacatcat cacccggcct ttggcgaagc tatccgccac ctgcccgaca aacggcgcaa
    28801 aaagaatgta agcacctaca aacaccattt gcaggatggg ctggctccac tccggataga
    28861 actgcgcttt cagtaacgcc agagtggcaa acagtagggc attatcgcca aacgcagaga
    28921 gaaactgcgc cacgataacc gctttcatcc ccttcgacca caacgaagtg ttagtgtgca
    28981 ctgactcact catcgtgttg ttccgcttcg tctacccagc ttttcaacgt gacaaagtca
    29041 ggtttgccgc tgccaagtaa tggcatctgt ttcagatagc gaatatcgcg cggtacagca
    29101 agctccggca cgccgtgctc gcgggcatac tgttgcaact tatcgcgcgt cagttcgtta
    29161 tctgtggtga acagcaccag tgcctcgcct ttgctggcat cgctcttaat cgcagtggca
    29221 tggactttat ctggcgaaac accaagtgcc agttgttcca ccatttccag cgacaccatt
    29281 tcgcctgcaa ttttggcaaa gcgttttgcg cggccctgaa tctgcacaaa gccctgctcg
    29341 tcaaaacgca caatatcgcc agtgtcatac cagccgcgct ccatttcgcc gcgaacattc
    29401 tcggcggtgg gcacttccag tacacctggc ttctccaccc gcagatagcc gttcattatg
    29461 ttcggccctt tcagttgcag gcgtccgccc tcttcgatac caggaaccga caacaggcgc
    29521 gcatccattc ctggtagaat acgccctacc gtaccgggtt tcgccgccat cggtacgttg
    29581 atagaaacga caggcgcgca ctcggttaca ccatagcctt caaggatgcg caggccaaat
    29641 ttatcctgcc aaagctgttt ggtactttct tgtagttttt ctgcgcctgc caccacatag
    29701 cgtagacgat agaagtcata cgggttggcg aaacgcgcgt agtgaccgag gaaagtcgag
    29761 gtaccgaaca acacggtgca actgcggtca tacaccaact ccggcacaat gcggtaatgc
    29821 agcgggcttg gataaaggaa cacttctgca cctgtaagca gtggcgtaaa caggcctacc
    29881 gtcagcccaa aggagtgaaa cagcggtaat gccgacataa agcgatcgtt ggtggtgaag
    29941 tcggcaatcg ttttaatctg ctcgacgttc gccagaatgc ttttatggct atggacgacg
    30001 ccttttggat ggccttcaga accggaggta aagaggatca gcgcctcttc ttccggctgc
    30061 tgttttacct gcgccaggcg cggcatcagc aaatgagcga agatccatac tttgtcggca
    30121 gtggtgacat ctgcttttaa atcttccaga tagacccagc gcacctgagt aagttgctcc
    30181 ggcagatgcc agagtttgcc tttatcgaga aactggcggg aagtgaagat ggttttgatt
    30241 tcagccgccg taatagcact ggtcagccct tttaccccag cagtgtagtt catcattgcg
    30301 ggaatgcggc gacgcgcgat ggccccaaaa atcactgccg cactgatgcc tgcattgggc
    30361 agcattaagc cgatgcgttc gccttcaaca ctgtattttt caaggatgcg tccaacaaac
    30421 agcgttttcg taagcaattt gcgataggag tctggggtaa agttgacgtc ttcgacacat
    30481 ttcttcccgg ctccgaagcg gtacattgca ctcagtaaag attcgtacag agtttcacgc
    30541 gggcgcaccg ccatacgcgc ttccatcatt atttgatgca gcatttcgcc agcgattttg
    30601 cgacggtcac gggcacgcga cgcatccggc atcgccacct gcgttggagg caaaatatgc
    30661 agagtaattt gcgggaacaa gcgacgttta accagacctt tcaggcggct gaagtgcgta
    30721 agttccgccc cttcaatacg cacaggaata accgttgcac cagacttcgc cgcgacaaaa
    30781 cccgcgccat cgtagatttt catcagcgag cctgtagtgg tgatgcgtcc ttcagggaaa
    30841 atcaccactg gtcggccctg ttccaccaga cgtaccagat gtttaatagc cataggttgc
    30901 gtcgggtcga gaggaacaaa gtcgataaat gatttcagcc aacgcatata ccactgttgg
    30961 cttattgagg tgtaaacggc aaacactgga cgcacaggta aaaacagtcc aagcaaaatg
    31021 ccatcaataa aagagacgtg attaggcgta attagaacgc gctcgccctt cagtgcctgg
    31081 gtgtcacccg taacgcgaac gcgatacaaa acacggcaca aatttcgaaa aaagctaaaa
    31141 agcattccaa ctccctttgc tctgattcag taaaagcgaa tggagggaga ttacacgaga
    31201 taaagaacgc gagcgacagt aaattaggtg cgaaaaaaaa cctgcgcatc cgcgcaggtt
    31261 ggtgcaagag acagggtacg aagagcgtac cgaataatct caccaatcaa tacctctggg
    31321 atcaccactt tagcaacctg aagccaaacg ccaccagcgg tcaatcgcaa cagcgtttcg
    31381 caaagtgtaa ccaaaggttt gcaatctctt tttttgtctt acttatttgc gtttggctca
    31441 cattcccacg atgaaaacac gccacccctt gaaccaacgg gcgttttccg taacactgaa
    31501 agaatgtaag cgtttaccca ctaaggtatt ttcatggcga ccataaagga tgtagcccga
    31561 ctggcaggcg tttcagtcgc caccgtttcc cgcgtcatta ataattcacc caaagccagc
    31621 gaagcttccc ggctggctgt gcatagtgca atggagtctc ttagctatca cccgaacgcc
    31681 aacgcccgtg cgctggcgca gcagaccact gaaacggtcg gtctgatcgt tggtgatgtt
    31741 tccgatccgt ttttcggtgc aatggtgaaa gcggtcgaac aggtggctta tcacaccggt
    31801 aatttcttat tgattggcaa cggttaccac aacgaacaaa aagagcgtca ggctattgag
    31861 caactgatcc gccatcgctg tgctgcgttg gtcgtccatg ccaaaatgat cccggatgcc
    31921 gatttagcct cattaatgaa acaaatgccc ggtatggtgc tgatcaaccg tatcctgcct
    31981 ggctttgaaa accgttgtat tgctcttgac gatcgttacg gtgcctggct ggcaacgcgt
    32041 catttaattc agcaaggtca tacccgcatt ggttatctgt gctctaacca ctctatttct
    32101 gacgccgaag atcgtctgca agggtattac gatgcccttg ctgaaagtgg tattgcggcc
    32161 aatgaccggc tggtgacatt tggcgaacca gacgaaagcg gcggcgaaca ggcaatgacc
    32221 gagcttttgg gacgaggaag aaatttcact gcggtagcct gttataacga ttcaatggcg
    32281 gcgggtgcga tgggcgttct caatgataat ggtattgatg taccgggtga gatttcgtta
    32341 attggctttg atgatgtgct ggtgtcacgc tatgtgcgtc cgcgcctgac caccgtgcgt
    32401 tacccaatcg tgacgatggc gacccaggct gccgaactgg ctttggcgct ggcggataat
    32461 cgccctctcc cggaaatcac taatgtcttt agtccgacgc tggtacgtcg tcattcagtg
    32521 tcaactccgt cgctggaggc aagtcatcat gcaaccagcg actaaccgca gttaaagcaa
    32581 ttccagagcc agtaattctt cgatggtctg gcgacggcga atcaaccgcg cctgaccatt
    32641 atcaaacaga acttctggta acagcgaacg gctattgtag ttggatgaca ttgatgcgcc
    32701 atatgcccct gtatcatgca gtaccagata atcacctgcc ttcacttccg gcaaggcgcg
    32761 ggtttcaaca tttccccctt cctgctgggt aaagacatcg cccgattcac ataacggtcc
    32821 ggcgacgacg gtttccaccg ttggcgcgtg ttccagagaa cgaccatcag ctgccagggc
    32881 actgatatgg tggtaactac cgtacattgc cgggcgcatc agatcgttga acccggcatc
    32941 aaccagcaca aagtggcggc tccccatttg tttgacgctc cgcacctgag taattaatac
    33001 gccagactgc gctaccagga agcgacccgg ttcaatttcc agtttcacag ggtggcccaa
    33061 atggcgggcg atttgctcac gcgcggcatt ccacagacca taataatgtt cggtatcaac
    33121 cgcctcttca ccctgttgat aaggaacaga aagcccaccg cccgcagaaa tagcctgtaa
    33181 atcctgaccg aattcgatga cctgacgcac catagcacca cacacctgtt ccagatgggc
    33241 ataatcaacg ccagaaccaa tgtgcatgtg aatgccgacc agctgcagat gatgacgttg
    33301 tatcacgtcc agtgcggcgg gcagatcggt gtaccagata ccgtgcttgc tgttttcgcc
    33361 accggtattg gttttttggc tatgtccgtg accaaacccc ggattaacgc gcagccatac
    33421 ccgatgccct ggcgaaacct ggcccagttg gtcgagcata tcaacagaac ccgcattcac
    33481 cggaatttgc aattcactga cgcgttcaag cgtcgcctga tcgataacat ctgccgtaaa
    33541 aacaatatca tcggggtgcg tttgcggatt gtaacccgcc gccaacgcac gctctatttc
    33601 gcctaacgag acggaatcca ctttcacgcc ctgctcacgc attaagcgca aaatatgaat
    33661 attggaacag gctttctgtg caaagcgcac cacatcaaac tgtttcagcg ctgcaatctg
    33721 ccgacgaata atttgcgcat cgtagaccca caccgggcag ccaaattcag cgggcaaacg
    33781 cagcagattt tcggcggtga gatcggtatc ggtgctgaac agtgaatgtg gcataacaaa
    33841 ctccagataa gtgctttttt atgattacgc cacatcataa aaagaataaa aaatatcgat
    33901 ttatgtcgag tctatgcaaa aatgatatgg attaccggat tgcgagagag cgctaatggc
    33961 cgccgttaac ttacgtcata ttgaaatttt tcatgcggta atgaccgccg gaagcctgac
    34021 tgaggcggca cacctgctac acacctcaca gccaaccgtc agccgcgaac ttgcgcgctt
    34081 tgagaaggtg atcgggctga aattgtttga gcgcgtacgt gggcgattac atcctaccgt
    34141 gcaaggactg cgtctgtttg aagaagtgca acgatcctgg tacggactgg atcgaattgt
    34201 cagcgctgca gaaagtctgc gcgagtttcg ccagggagaa ctgtctattg cctgcctgcc
    34261 ggtcttttcg caatcttttt taccgcagct cctgcaaccc tttctggcac gttatcccga
    34321 tgtcagctta aatatcgtgc cccaggaatc accgctactt gaagagtggc tctcggccca
    34381 gcgtcatgat ttaggactca ctgagacact ccatacgcct gcgggaacag aacgtaccga
    34441 attactctct ttagatgaag tgtgtgtgtt acctccgggt catccgctgg cggtaaaaaa
    34501 ggtattaacg ccggatgatt ttcagggtga gaactacatc agcctttccc gtactgacag
    34561 ctatcgccag ttgctggatc agctatttac tgaacatcag gttaaacgac gcatgatcgt
    34621 agaaacccac agcgccgcgt caatctgcgc aatggtacgg gcgggggtag gtgtttcggt
    34681 ggttaacccg ctcaccgcac tggattatgc ggcaagcggt ttagtggtgc ggcggttcag
    34741 tattgcggtt ccgttcaccg tcagcctgat ccgccccctg caccgcccgt catcagcgct
    34801 ggtgcaggcg tttagtgagc atttacaagc ggggttaccg aaactggtca cttctcttga
    34861 cgctattttg tcgtcagcta cgacagcata aaagcgacag catcctcggc atggatcgcc
    34921 gcagtatcaa acacaggcaa aacactgcgc tcttctggca ccagtaaacc aatttctgtg
    34981 cagccaaaaa tgacgccctg tgcgccctgt tctgcaaggc gagcaatcac ttgcgcataa
    35041 taagcgcgtg acgcttcggt aaattgcccc agacacagtt cttcaaaaat aatctgatta
    35101 attttcgccc gttcatccgc ttcaggaata agacaattga tggaaaattg ttccgtcagc
    35161 cgcccgcgat aaaaatcctg ttccatggtg taacgcgtac ccagcagcgc cacacgagtc
    35221 attccggccc cggtaattgc acgtccggtg gcatccgcaa tgtgtaagaa aggcagagtg
    35281 caacgtgact caatggcatc cgccacttta tgcatcgtat tggtacataa cacaatacct
    35341 tctgcgcccg cccgctgtaa gccaagcgcc gcctcagcca gaatgtcccc ggttttatcc
    35401 cattccccgc gacgctggca ctcttctatt tcatgaaaat cgacgctatg tagcagcact
    35461 tgcgcagagt gaagcccacc aagccgctgt ttaatgcctt catttatcaa acgatagtaa
    35521 ggaatggtgg attcccagct cattcctccc agcaaaccaa ttgttttcat tcctctctcc
    35581 tgatgtgtgt taccgcaaca aggctgaata aggaacgaga caaacgcctc aacggccaag
    35641 tgcccaatct ctattaacga aaaaagggcc ggatgtacag cacatccggc ccgtgaaatc
    35701 agatgccgat atttctcaac ttctcgcctg ccatcagttt gcgttcgata tgttccagcg
    35761 tgacattttt ggtttccgga atgagccaga aagtgatgcc cacaaacgca atgttcagcg
    35821 cagtgtagag ccagaacgta ccggcagcgc caatgctgtc gagcagcgtc aggaaggtcg
    35881 cgccgataat catattcgac acccagttcg tggtggtcga acaggtaata ccgaaatcgc
    35941 ggcatttcag cggctgaatt tcagagcaca ggatccacac cactggcgcg gcgctcatcg
    36001 cataaccggc aatacacatc atcgtcatgc caacagagag ccaggacaag ccactggaag
    36061 ccgtaccgtt atcaaactgc atcaggcaat agcccagcac cagagtgcct aacgccatca
    36121 cgctgaaacc aattttcaga gccggtttac gccctgcttt atctaccgta aacaccgcaa
    36181 taaaggtggc gaacataaag gtcagcccta cgaccagagt cgcaatcatc tgttgttctg
    36241 tggtcgtaaa gcccgccatt ttgaagatac gcggcgcgta gtacatgatg atgttcatac
    36301 cggtaaactg ctgcatcgcc tgcaacaaca taccgagaaa cacagcacga cggacgttac
    36361 ggttgatctt aaacagtgcc caaccgccct gttttaactt caggctttca cgaatttcgt
    36421 tgagttcttc tcgcgctttt tccgacgtat cgcgcagcat acgcaatact tcttccgcct
    36481 caatatgacg ccccttttcc gccaaccagc gcgggctatt tggcaggaag accaccagaa
    36541 taatcagcag aactgctggt aaagcaagaa cccccaacat tgcgcgccag ttaccgctat
    36601 aactgaacgc tgtatcggat aaaaacgcca gcacgatgcc gagtgtgacc atcaactggt
    36661 acatactgat catcttaccg cgaacgtttt cacttgccat ttcagaaaga tacagaggag
    36721 cggtgtaaga cgcgatcccg acagcaatgc ccagcaccac acgagcggcg attaacatct
    36781 ctacgctggt cgcaaaagcg gaccctatag aaccgagtac aaacaggatg gcccccgcca
    36841 tcaggctgta tttacgcccc aggcggaacg acagccaacc attaaacagc gcaccaattg
    36901 ctgcgccgag catcatgcta ctaaccaccc attcctgcaa atgactggtc agcacaaagt
    36961 gatcggtaat gaacggcaac gctccggcga ttacgccgat atcaagacca aataacaatc
    37021 ctgcgaccgc agcagctacc gaaacaaaca tattcatacg ccgcgtatcc cgcaaagaac
    37081 gtggcgttaa agcagattcc gtattgatag taaccatttt ttcctgccag cagagagtaa
    37141 gacatagtga aaaaatacgt gaacaactca cgcaggtgtc aggtcggaaa cagcataaat
    37201 atggattaaa ttgctgcgac atgtcgttat gtgatggata ttccaatttt caaattaagt
    37261 tgaattattg agattattat taaccaccta attttacagc agataaaatt cataaagttc
    37321 attaattgat aattaatatg gattatttca taaccatgat atggattatg atgatctaca
    37381 ggtataaaaa accctgccat gcggcagggt cataaaagta agaagaatga attaacgcgc
    37441 cagccaaccg ccatccacgg caatggtata accattcaca taatctgaag cgctggaggc
    37501 aaggaacact atcggcccca tcaggtcact cggcagtccc caacgaccag ctggaatgcg
    37561 gtcgagaatt tccgcgctac gttgttcatc tgcccgtagt tgttgagtat tgttggtcgc
    37621 catgtaaccc ggagctatcg cattaacatt aatgttgtgt ttagcccatt cgttcgccat
    37681 caatcgcgtc acacccatca cgccgctttt tgatgcggta taagaaggca cacggatccc
    37741 gccctggaag gagagcattg acgcgatatt gataatcttg ccgccattgc cttgcgcgat
    37801 aaagtgtttc gccgctgcct gagacatgaa gaatacgctc ttgatattca ggttcatgac
    37861 atcgtcccag tctttttcgc tgaactcgag agcgtcttcg cggcgaatca atccggcgtt
    37921 attcaccagg atatcaatat gaccaaattc agctaccgcg cgatccagca gtccaggaat
    37981 gccatcaatc tttcgcagat cggcggtcag gcttaaaaaa cgacgcccca gcgccgtgac
    38041 ctgctcgatg gtttcagtcg gttcaacgat gttaatgcca acaatgtcac agcccgcttg
    38101 cgccagcccc aacgccatcc cctggcccag cccagtatca caaccagtga c
//
LOCUS       DAJVUN010000011        38079 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.011, whole genome shotgun sequence.
ACCESSION   DAJVUN010000011 DAJVUN010000000
VERSION     DAJVUN010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 38079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38079
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.011"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(62..1702)
                     /gene="pgm"
                     /locus_tag="OQQ76_000452"
     CDS             complement(62..1702)
                     /gene="pgm"
                     /locus_tag="OQQ76_000452"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HCS1967058.1"
                     /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT
                     SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL
                     AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP
                     NGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADI
                     VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA
                     IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ
                     HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES
                     AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA
                     AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP
                     SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA"
     gene            complement(1728..2273)
                     /gene="seqA"
                     /locus_tag="OQQ76_000453"
     CDS             complement(1728..2273)
                     /gene="seqA"
                     /locus_tag="OQQ76_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HCS1967059.1"
                     /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP
                     VTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD
                     AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI
                     EHIMQSMQFPAELIEKVCGTI"
     gene            2458..3222
                     /gene="ybfF"
                     /locus_tag="OQQ76_000454"
     CDS             2458..3222
                     /gene="ybfF"
                     /locus_tag="OQQ76_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1967060.1"
                     /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN
                     IIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALA
                     RDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ
                     FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPSGNSPYVSEQYRDDLL
                     AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND"
     gene            3362..3655
                     /gene="ybfE"
                     /locus_tag="OQQ76_000455"
     CDS             3362..3655
                     /gene="ybfE"
                     /locus_tag="OQQ76_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415211.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HCS1967061.1"
                     /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR
                     DKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV"
     gene            3795..4325
                     /gene="fldA"
                     /locus_tag="OQQ76_000456"
     CDS             3795..4325
                     /gene="fldA"
                     /locus_tag="OQQ76_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HCS1967062.1"
                     /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL
                     EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL
                     GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW
                     VKQISEELHLDEILNA"
     gene            4535..4621
                     /gene="uof"
                     /locus_tag="OQQ76_000457"
     CDS             4535..4621
                     /gene="uof"
                     /locus_tag="OQQ76_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001491546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fur leader peptide"
                     /protein_id="HCS1967063.1"
                     /translation="MIRIISRANSVTSSNEVNRLVTGQIPHD"
     gene            4614..5060
                     /gene="fur"
                     /locus_tag="OQQ76_000458"
     CDS             4614..5060
                     /gene="fur"
                     /locus_tag="OQQ76_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HCS1967064.1"
                     /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI
                     DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF
                     SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK"
     gene            complement(5145..5471)
                     /locus_tag="OQQ76_000459"
     CDS             complement(5145..5471)
                     /locus_tag="OQQ76_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967065.1"
                     /translation="MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP
                     EKIEACQSVLNVLKKEKQHQHFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE
                     IRSNNK"
     gene            complement(5521..6927)
                     /gene="chiP"
                     /locus_tag="OQQ76_000460"
     CDS             complement(5521..6927)
                     /gene="chiP"
                     /locus_tag="OQQ76_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitoporin"
                     /protein_id="HCS1967066.1"
                     /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG
                     IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAVFTAIEMAEN
                     GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGLVWARAGYIQPTGQTLL
                     APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV
                     DYLHSLGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD
                     KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYAS
                     SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQS
                     NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI
                     FQDERDVKFMVIAPFTIF"
     gene            complement(7374..9038)
                     /gene="glnS"
                     /locus_tag="OQQ76_000461"
     CDS             complement(7374..9038)
                     /gene="glnS"
                     /locus_tag="OQQ76_000461"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HCS1967067.1"
                     /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
                     AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSD
                     YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK
                     MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI
                     SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
                     LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE
                     DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRAD
                     FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG
                     RKVKGVIHWVSAAHALPVEIRLYDCLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL
                     KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE"
     gene            complement(9241..11187)
                     /gene="nagE"
                     /locus_tag="OQQ76_000462"
     CDS             complement(9241..11187)
                     /gene="nagE"
                     /locus_tag="OQQ76_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetyl glucosamine transporter subunit
                     IIABC"
                     /protein_id="HCS1967068.1"
                     /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA
                     GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI
                     ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH
                     AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR
                     FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV
                     TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS
                     QNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQL
                     ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI
                     VGAKAESIGDAMKKVVARGPVAAASAEATPSTAAPVAKPQAVPNAVSIAELVSPITGD
                     VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI
                     VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD
                     FSGLIIKAQGHVVAGQTPLYEIKK"
     gene            11521..12321
                     /gene="nagB"
                     /locus_tag="OQQ76_000463"
     CDS             11521..12321
                     /gene="nagB"
                     /locus_tag="OQQ76_000463"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008805656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HCS1967069.1"
                     /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT
                     PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE
                     NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK
                     TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEG
                     CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL"
     gene            12381..13529
                     /gene="nagA"
                     /locus_tag="OQQ76_000464"
     CDS             12381..13529
                     /gene="nagA"
                     /locus_tag="OQQ76_000464"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HCS1967070.1"
                     /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR
                     SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT
                     SDELMKQGVRVMREYLARHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC
                     ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY
                     NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA
                     PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM
                     ATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ"
     gene            13538..14758
                     /gene="nagC"
                     /locus_tag="OQQ76_000465"
                     /gene_synonym="nagR"
     CDS             13538..14758
                     /gene="nagC"
                     /locus_tag="OQQ76_000465"
                     /gene_synonym="nagR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NagC"
                     /protein_id="HCS1967071.1"
                     /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL
                     APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL
                     FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP
                     DSSKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV
                     RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ
                     RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN
                     PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR
                     AMLNGILLQHLLEN"
     gene            14806..15558
                     /gene="nagD"
                     /locus_tag="OQQ76_000466"
     CDS             14806..15558
                     /gene="nagD"
                     /locus_tag="OQQ76_000466"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide monophosphatase NagD"
                     /protein_id="HCS1967072.1"
                     /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNY
                     PSQTGQDLANRFTTAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA
                     GFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALC
                     AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI
                     LVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI"
     gene            15955..17619
                     /gene="asnB"
                     /locus_tag="OQQ76_000467"
     CDS             15955..17619
                     /gene="asnB"
                     /locus_tag="OQQ76_000467"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001724523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase B"
                     /protein_id="HCS1967073.1"
                     /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA
                     ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV
                     ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVTS
                     EMKSLVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDFDAVKDNVTDKNELRQALED
                     SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP
                     GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDTIRDVIYHIETYDVTTIRASTPMYLMS
                     RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKA
                     MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFESYLPASVAWRQK
                     EQFSDGVGYSWIDTLKEVAAQQVSNQQLETARFRFPYNTPTSKEAYLYREIFEELFPL
                     PSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSAYK"
     gene            18000..18076
                     /locus_tag="OQQ76_000468"
     tRNA            18000..18076
                     /locus_tag="OQQ76_000468"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18034..18036,aa:Met,seq:cat)
     gene            18085..18169
                     /locus_tag="OQQ76_000469"
     tRNA            18085..18169
                     /locus_tag="OQQ76_000469"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18119..18121,aa:Leu,seq:tag)
     gene            18193..18267
                     /locus_tag="OQQ76_000470"
     tRNA            18193..18267
                     /locus_tag="OQQ76_000470"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18225..18227,aa:Gln,seq:ttg)
     gene            18302..18376
                     /locus_tag="OQQ76_000471"
     tRNA            18302..18376
                     /locus_tag="OQQ76_000471"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18334..18336,aa:Gln,seq:ttg)
     gene            18392..18468
                     /locus_tag="OQQ76_000472"
     tRNA            18392..18468
                     /locus_tag="OQQ76_000472"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18426..18428,aa:Met,seq:cat)
     gene            18517..18591
                     /locus_tag="OQQ76_000473"
     tRNA            18517..18591
                     /locus_tag="OQQ76_000473"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18549..18551,aa:Gln,seq:ctg)
     gene            18629..18703
                     /locus_tag="OQQ76_000474"
     tRNA            18629..18703
                     /locus_tag="OQQ76_000474"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18661..18663,aa:Gln,seq:ctg)
     gene            complement(18857..20032)
                     /gene="ubiF"
                     /locus_tag="OQQ76_000475"
     CDS             complement(18857..20032)
                     /gene="ubiF"
                     /locus_tag="OQQ76_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706550.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HCS1967074.1"
                     /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFSVTVIEHAEPAPFVA
                     DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL
                     PLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRDNDLQELELKGGETIRAKL
                     VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL
                     FDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL
                     QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY
                     QMRRMADNFIMQSGMDLFYAGFSNNLPPLRFVRNLGLMAAERAGVLKRQALKYALGL"
     gene            20178..21602
                     /gene="miaB"
                     /locus_tag="OQQ76_000476"
     CDS             20178..21602
                     /gene="miaB"
                     /locus_tag="OQQ76_000476"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HCS1967075.1"
                     /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL
                     LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII
                     FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY
                     CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSF
                     ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL
                     MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY
                     SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT
                     SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV
                     AETPESVIARTRKENDLGVGYYQP"
     gene            21755..22795
                     /locus_tag="OQQ76_000477"
     CDS             21755..22795
                     /locus_tag="OQQ76_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HCS1967076.1"
                     /translation="MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRD
                     NHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLTIKEARVLEQSAESV
                     PEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL
                     ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIER
                     NVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDL
                     PRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAAL
                     AAERKREEQEQK"
     gene            22792..23259
                     /gene="ybeY"
                     /locus_tag="OQQ76_000478"
     CDS             22792..23259
                     /gene="ybeY"
                     /locus_tag="OQQ76_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014169133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HCS1967077.1"
                     /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR
                     VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK
                     PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETKIMLALGYEDPYIAEKE"
     gene            23349..24227
                     /gene="corC"
                     /locus_tag="OQQ76_000479"
     CDS             23349..24227
                     /gene="corC"
                     /locus_tag="OQQ76_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308723.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HCS1967078.1"
                     /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS
                     GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR
                     FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS
                     QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA
                     SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ
                     VHVKIPDDSPQPKLDE"
     gene            24252..25790
                     /gene="lnt"
                     /locus_tag="OQQ76_000480"
     CDS             24252..25790
                     /gene="lnt"
                     /locus_tag="OQQ76_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HCS1967079.1"
                     /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL
                     QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVVLAAYLS
                     LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL
                     KGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP
                     EKTIQVSMVQGDIPQSLKWDGDQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN
                     QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN
                     KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSVNGIELTAAICYEIIL
                     GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA
                     VIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR
                     ARKR"
     gene            complement(25868..27745)
                     /locus_tag="OQQ76_000481"
     CDS             complement(25868..27745)
                     /locus_tag="OQQ76_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCS1967080.1"
                     /translation="MSASSVKPLNVQLPAITLILFALCIGIFCYLAQWMSYEEVDQSA
                     LIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMFAFLVVGGVAEQILGKWRLLI
                     TWLFSGVFGGLISACYALRDSDQIVISVGAFGAIMGIAGAAIATQLASGAGTYHKNQR
                     RVFSLLGMVALTLLYGARQTGIDNACHIGGLIAGGALGWLSARLSGQNRLVTEGGIIV
                     AGSLLLTGAIWLAQQQMDESVLQVRQSLREAFYPQEIEQERRQKKQQLAEERNALKET
                     LSAPVSREQASGDLLAEIADIHDMAISRDGNMLYAAIENTNSIVVFDLGQKKILHTFT
                     APIAKEKSVKHCGGCKDQGVRSLALSPDEKLIYATSFEANALSVINVATGEIIQSITT
                     GAHPDSLILSRDGTKAWVMNRTSNSVSAIDLVTYQHVADIPLEKYDGAGTSGKPGAWV
                     MALSPDERTLLVPGAGRGNIVRINTITHQKEDFPAGDARGTISAMRFRPENGEVIFAD
                     SQGISRISVGDQQASIMTQWCSRSVYSVEGISPDGQYLALVSYGLQGYVILLNINAGQ
                     IIGVYPASYVNHLRFSADGRKIFVMAKNGLIQMDRTRSLDPQAIIRHPQYGNVACIPE
                     P"
     gene            28200..29122
                     /gene="gltI"
                     /locus_tag="OQQ76_000482"
                     /pseudo
     CDS             28200..29122
                     /gene="gltI"
                     /locus_tag="OQQ76_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308721.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter
                     substrate-binding protein GltI"
     gene            29292..30032
                     /gene="gltJ"
                     /locus_tag="OQQ76_000483"
     CDS             29292..30032
                     /gene="gltJ"
                     /locus_tag="OQQ76_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltJ"
                     /protein_id="HCS1967081.1"
                     /translation="MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAF
                     LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA
                     ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL
                     LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA
                     YVLINAIIMLVMTLVERKVRLPGNMGGK"
     gene            30032..30706
                     /gene="gltK"
                     /locus_tag="OQQ76_000484"
     CDS             30032..30706
                     /gene="gltK"
                     /locus_tag="OQQ76_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltK"
                     /protein_id="HCS1967082.1"
                     /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM
                     RLSSFAPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV
                     AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT
                     QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY
                     LKRRTA"
     gene            30706..31431
                     /gene="gltL"
                     /locus_tag="OQQ76_000485"
     CDS             30706..31431
                     /gene="gltL"
                     /locus_tag="OQQ76_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter ATP binding
                     protein GltL"
                     /protein_id="HCS1967083.1"
                     /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ
                     VKVLKRDKAPAREKALKLLERVGLSAHANKFPAQISGGQQQRVAIARALCMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHKMGFARKVANRVIFMDEGKIVEDS
                     PKDAFFDDPKSDRAKDFLAKILH"
     gene            31549..32484
                     /gene="rihA"
                     /locus_tag="OQQ76_000486"
     CDS             31549..32484
                     /gene="rihA"
                     /locus_tag="OQQ76_000486"
                     /EC_number="3.2.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-specific ribonucleoside hydrolase
                     RihA"
                     /protein_id="HCS1967084.1"
                     /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK
                     TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC
                     TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT
                     PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHIEDTERFRAIGNPVSTIVAE
                     LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVV
                     DYYYLTGNKPNATVMVDVDRQGFVDLLADRLKFYA"
     gene            32568..34238
                     /gene="hscC"
                     /locus_tag="OQQ76_000487"
     CDS             32568..34238
                     /gene="hscC"
                     /locus_tag="OQQ76_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HscC"
                     /protein_id="HCS1967085.1"
                     /translation="MDNAELTIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS
                     MDENNHILVGKPAVSRRTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSL
                     KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL
                     HTQQNTRSLVFDLGGGTFDVTVLEYATPVIEVHASAGDSFLGGEDFTHMLVDEVLKRA
                     EVARTTLNESELAALYVCVEAAKCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLL
                     NRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV
                     ALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRV
                     ETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGL
                     LEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAKLEE
                     LWARALGDEREEIGRVITDFDAALQSNDMARVDEVRRRASDYLAIEIP"
     gene            complement(34298..35749)
                     /gene="djlC"
                     /locus_tag="OQQ76_000488"
     CDS             complement(34298..35749)
                     /gene="djlC"
                     /locus_tag="OQQ76_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlC"
                     /protein_id="HCS1967086.1"
                     /translation="MKTCWQILEIESTTQIDIIRQAYLARLPLCHPETDPQGFKALRQ
                     AYEEALRLAVNPVEEADDEEKDAAAEHEILRAFRTLLDSESDRFQPSAWQKFIQQLNT
                     WNMEDVDQLRWPLCAIAIEARYLSLNCASLLAERLNWHSFNDSEGMDEEEREAFLEAI
                     QAGDCFDFLSLLEYPVALQNQTVEYYFALERCCRYHPDYVTAFLAMEGPWFIPDDAKL
                     HRKLLRWYSSVQTGMAELIPVAKQWQMEEPESEDARYYLCAQRLYCGEGESLLADLCA
                     YRESYPSTQADNLLLQWSKRHCPDYFALLVMVIEAQSMVDAQSKPLKYVPGESARTRL
                     LWAEILHSGKLSPLGQSFIESLFFKRKAWAWWKSRVGSETEQDSPLLDLYRVAEQVVL
                     EAFPKQEMLARLNTRLEGGDAHPLEAIITRMLLTKVKLEPEDEDVDEPTPENHEEKND
                     EDEKPQSITSIIKISLTVLVIGYALGKIAMLFS"
     gene            complement(35746..36453)
                     /locus_tag="OQQ76_000489"
                     /pseudo
     CDS             complement(35746..36453)
                     /locus_tag="OQQ76_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415181.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
     gene            complement(36534..37961)
                     /locus_tag="OQQ76_000490"
     CDS             complement(36534..37961)
                     /locus_tag="OQQ76_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HCS1967087.1"
                     /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETDPQGFKQLRQ
                     AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNY
                     CSMEEIDELRWSLCTIAMNTAHLSFECVVLLAERLRWLQEENVGEIDEEELESFLYAI
                     AKGNVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPEWLTLYLAQHRAVIIPDDAKL
                     HRNLLRWYSAGRLDIPELLDYARSWREAEPDNEDARYYEYAQRVYCGEGESLLAELCD
                     YWREYPSTQADALILQWCRQHRVDYYPLVVMMIEARELVNDQGKQLLYVPGDSARTRF
                     HLYEILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHLLWPLYLVAKQLVQASQPT
                     EESLMPIVSRLDAEDRCPLEALIIRRLLIQAANFTEKQTVEPEPQPQPMPVDDGGPGC
                     LGVIKIIFYIFIFAGLIGKILHLFG"
     gene            complement(37958..>38079)
                     /locus_tag="OQQ76_000491"
     CDS             complement(37958..>38079)
                     /locus_tag="OQQ76_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS1967088.1"
                     /translation="NDMFYQLFASDDAYYPTLSWQPLADYPTCPETLKDMSDL"
BASE COUNT         9424 a         9817 c         9514 g         9324 t
ORIGIN      
        1 tgtgtttgtc atacgtaaaa aagggcgatc ttccgaccgc cctttttctt atttaatgtg
       61 tttacgcgtt tttcagaact tcgctaacaa tctcaaccgc ttctttctca atctgcttgc
      121 gatgttcttc accgaggaag ctttcgcagt agatcttata tgcgtcttcc gtgcctgacg
      181 gacgcgcggc gaaccagccg ttgtcagtca tcactttcag accgccgata gaagcaccat
      241 tgcccggtgc cgccgtcagg cgcgcggtga tcgggtcgcc tgccagggtg ctggcgctca
      301 ccatttccgg agacagctta gacagcgccg ctttttgtgc ggaagtcgca gctgcctgca
      361 aacggttgta gctcggcgca ccaaagcgtt ttgccagttc gttgtagtgt tcctgcgggt
      421 tcttaccggt gacagcggtg atttccgccg ccagcagaca catgatgatg ccgtctttgt
      481 cggtggacca cggcgtgccg tcgaaacgca ggaaggaagc ccctgcgctc tcttcgccgc
      541 caaagccgaa gctgccgtcg aacagaccat caacaaacca tttgaaacct accgggactt
      601 ctaccagctt gcggcccaag tcattgacca cacggtcgat catcgcagaa gaaaccagcg
      661 ttttaccgac agcaacatct ttgccccact gcggacgatg ctggaacagg tagttgatcg
      721 ccaccgccag gtagtggttc ggattcatca aacctgccgg agtgacgata ccgtgacggt
      781 cataatccgg gtcgttagca aacgccagat cgaacttatc acgcagtgcc agcaggcccg
      841 ccatcgcaca ctcggaggag cagtccatac ggatcgcgcc gtctttatca aggtgcataa
      901 agcggaaggt ttgatcgacc tgatcgttaa cgatggtcag gttgaggttg taatactcgc
      961 caatacgctt ccagtattcg ataccggaac cgcccagcgg atcaacgccc agcgtcaggc
     1021 ccgctttctg aatcgccgcc atatcaacga tatcggccag accttccaca aacggctgca
     1081 ccagatcctg ctctttcaca tgaccggatg ccatcgcttc gtcgagggag atacgcttca
     1141 cgcctttcag gccatcggcc agcagtgcgt tggccctgtc ttccaccact ttggtgacgt
     1201 tggtatcagc cgggccacca tttggcggat tgtacttgat accaccatct tccggcgggt
     1261 tatgggacgg tgtaatcacg ataccgtctg ccagcggacc acctttttta ttgtgaacca
     1321 ggatggcatt ggaaacggca ggcgttggag tgaagccatt gttttcctgc acaatgacat
     1381 caacgccgtt cgctgccagc acttccagta cggaaatgaa cgcaggctcg gacagggcgt
     1441 gagtatcttt acccacatag caagggccag tgatgccgtt tttcgcacgt tcttcagcaa
     1501 ttgcctgagc gatcgccaga atgtgcggct cgttaaagct gtggcgcgct gcactgccac
     1561 ggtgaccgga agtaccgaat ttcaccgcgt gctccgcatt ccctgcttct ggtttcagta
     1621 cataatattg cgccgtcagt tgggcgacgt taatcaaatc actctgttgt gcaggttggc
     1681 ctgcacgatt gtggattgcc attgctttgt cctttgtctg caacgtttta gatagttccg
     1741 caaaccttct caatcaattc cgccgggaat tgcatcgact gcatgatgtg ttcgatcatg
     1801 ctgcatttac ggccggtgtt ggtgttggtg atcacccaat acggcgtgcc tggcacatgt
     1861 ttcggcttgg tctgattacc atttttcagc agcgtttgtt catctgccgc aaagtaaacg
     1921 cgtgtacgac cgtgcaacga ttccgttgct tcggcaaacg cctgggcgtc aagagaatat
     1981 agtgtagaca acagcagcat aaagcgattg accgctcgct tttgctctgc gtattcgtca
     2041 gaaagcagaa gttcacgcat tgcgcgaacc ttgtctttaa tcgttttgac cggcttcgct
     2101 tcgacgatag caggtgacgc aacgcgaacc tctttcgtca ccggagcagc aggctgtgat
     2161 gcggcggaaa atttcaacat acgccgtaaa atgtcggatg cgctctcgcc gatatgctta
     2221 gtgtggctgg caatatagct gtagagttca tcatcaactt caatcgtttt catcttaatc
     2281 cagtgcagtg tcttagctga atacaagtcg ccaagagtat atgaataaat cccggcagcg
     2341 gatagcgtca agcctggctt gcagaaaaac tcggaataaa ccttatttgt tgcagccctg
     2401 tggcacaatg gtcaacataa taccctaaca cgacaacgcg aaaaaaagaa ctttgccatg
     2461 aaattgaata tccgcgcgca aactgcacaa aaccagcaca ataattctcc catcgttctt
     2521 gtccatggtc tgtttggtag cctcgacaac cttggcgtac tggctcgcga tctggtaaac
     2581 gatcacaata tcatccaggt tgatatgcgt aaccacggtc tttcaccgag agatccggta
     2641 atgaattacc cggcgatggc gcaggatctt gttgatactc tggatgcaca gcagatcgac
     2701 aaagcaacat ttatcggtca ctccatgggc ggtaaagcgg taatggcact tacggcactg
     2761 gcccgcgatc gcatcgataa actggtggcg atcgatatcg caccggtcga ctatcacgta
     2821 cgccgtcatg atgagatttt cgcggctatc aacgcggtca gtgaatcgga cgcacaaact
     2881 cgccagcaag cagcagcaat aatgcgccag catcttaatg aagaaggggt gattcagttt
     2941 ctgttgaaat cttttgttga cggggagtgg cgctttaacg tgccggtatt gtgggatcag
     3001 tatccgcata ttgtgggttg ggagaaaatc ccggcatggg atcaccctgc cctgtttatc
     3061 cctagcggca attctccgta tgttagcgag cagtaccgtg atgatttact ggcacaattt
     3121 ccacaggcac gggcgcatgt gattgcaggc gcgggtcact gggtccatgc tgaaaaaccg
     3181 gatgcggtat tacgcgctat ccgtcgctat ctcaatgatt aacgcaactg attaaaaacc
     3241 cagcgtccgc gtcgctttcc gcgcgtgggc gttggcgtga ctcatcgcgc tgatgtatta
     3301 tggcgcgcta tccatccggg cagaggcctg gctgattgtt tcccccgaag tcaccaagat
     3361 catggccaaa gaacaaacgg accgtacgac attagatctg ttcgcgcacg agcgtcgacc
     3421 gggacgaccg aaaactaatc cgctttcgcg cgatgaacag ctgcgtatta ataaacgcaa
     3481 ccagctaaaa cgcgacaaag tacgtggcct taagcgtgtc gaactgaagc tgaacgcgga
     3541 agctgtcgag gcgctgaacg agctggcgga gtcgcgcaat atgagccgta gcgaactgat
     3601 cgaagagatg ttaatgcagc aactggcggc gctgcgtagt cagggcatcg tttaaatttc
     3661 cactttcatg tagcacagtg tgcagtcctg ctcgtttgct gattccgcaa gactgcctgt
     3721 tctgctatga ttgcctttat ccgtgggcaa ttttccaccc ccatttcaat aagtttcaag
     3781 aggttatttc actcatggct atcactggca tctttttcgg cagcgacacc ggtaataccg
     3841 aaaatatcgc aaaaatgatt caaaaacagc ttggtaaaga cgttgccgat gtccatgaca
     3901 ttgcaaaaag cagcaaagaa gatctggaag cttatgacat tctgctgctg ggcatcccaa
     3961 cctggtatta tggcgaagcg cagtgtgact gggatgactt cttcccgact ctcgaagaga
     4021 ttgatttcaa cggcaaactg gttgcgctgt ttggttgtgg tgaccaggaa gattacgccg
     4081 aatatttctg cgacgcattg ggcaccatcc gcgacatcat tgaaccgcgc ggtgcaacga
     4141 tcgttggtca ctggccaact gcgggctatc atttcgaagc atcaaaaggt ctggctgatg
     4201 acgaccactt tgtcggtctg gctatcgacg aagaccgtca gccggaactg accgctgaac
     4261 gtgtagaaaa atgggttaaa cagatttctg aagagttgca tctcgacgaa attctcaatg
     4321 cctgatgtga tgcggcgtag actcatgtct acgccgtatt aatagataat gccaatcaaa
     4381 ataattgcta caaatttgta acttttgctg ttgtacctgt acaatgtccc ggtgttcaag
     4441 tggccttgcc gttgtaaatg taagctgtgc cacgttttta ttaacaatat ttgccaggga
     4501 cttgtggttt tcatttaggc gtggcaattc tataatgata cgcattatct caagagcaaa
     4561 ttctgtcact tcttctaatg aagtgaaccg cttagtaaca ggacagattc cgcatgactg
     4621 ataacaatac cgccctaaag aaagctggcc tgaaagtaac gcttcctcgt ttaaaaatcc
     4681 tggaagttct tcaggagccg gacaaccatc acgtcagtgc ggaagattta tacaaacgtc
     4741 tgatcgatat gggtgaagaa attggtctgg ctacggtata tcgcgtactg aaccagtttg
     4801 acgacgctgg tatcgtcacc cgccacaatt ttgaaggcgg taaatccgta tttgaactga
     4861 cacagcaaca tcaccacgat cacctgatct gcctcgactg cggcaaggtt atcgaattta
     4921 gtgatgattc catcgaagcg cgtcagcgtg aaattgccgc aaaacatggc attcgcctga
     4981 ctaaccacag tctctatctt tacggtcact gtgccgaagg cgattgccgc gaagatgaac
     5041 atgcgcacga aggcaaataa gccagcctga atgagaaaaa gccaacctgc gggttggctt
     5101 ttttatgcaa gggaaataag aaaagcgaga gttacagctc tcacttattt gttattactg
     5161 cgaatttcct gccaaacttt atcacaatcg gctttcaccg cctgatcatt tccggtttgc
     5221 gttgcacgca gacactgctg ataatccagt acgcggacac tttcctggtc ggcaaaatgc
     5281 tgatgttgtt tctctttctt cagcacgttt aacacgctct ggcaggcttc aattttttct
     5341 ggcgaacctt gtgcggtgtt gatacaggcg ctgtatgcct ctttcagacg actgtcttcc
     5401 tgtggcgcgg ttgattgcgc acaagctacc agccccgatg ccattatggc gatgagaatc
     5461 agttttttca tagcaaattc ctcaaacgtg cggcaggcac aaaacctgcc gcgtcgggca
     5521 tcagaagatg gtgaatggtg cgattaccat aaatttcacg tcacgctcat cctggaagat
     5581 gttgccgtaa ccaccgcccc agcttgggat gtcggagtgg ttgtcgtatt cggtgaagtg
     5641 cagtttgaac atcgtgcctt tggcgcgacc gtcctgaatg gtgtagaccg catccaggct
     5701 gtatgcagac tcttcaatag tccggttttt gtcgtagtac gcatccggat tgctctgcca
     5761 ggtcgcaggt ttagcatccc atgcgtaaac gtaggaagcg ccgatggcga agcctggaag
     5821 attccagttt ttcaggtcat acatcgcacc gaagaagacc gctttttcgc cgttagcgtt
     5881 gaagtcggaa cggttatccc accagatatc caggcggccg ttggaggaag cgtaggttgg
     5941 agtcatacgt tgcaggaagt atccctgctg accgtcagcc ttaacccagg tgccttcgag
     6001 gcgcaaatcc actacgtcag ccgcccggta accaaaggtc aacgcttgca gccaggcggt
     6061 gccgtcataa aggtcgttga cgctgcgatc gtcaacttta tcgcgcgtac catagaactg
     6121 gtagctggtg gttaacgggc taccggcgat atcaaatttg tagctggctt tggcaaaata
     6181 ttgatcgata tacccttccg cctgaccaaa tgccgcttcc agtacgaagt tatttttgaa
     6241 gtcgtatttc gccccaaggg agtgcagata atcaactttg gtggttttat cgttctgata
     6301 aaactcatcc atttccagat gccacggcgc tttgtattcg ttggtccaca tgtaggagaa
     6361 actcaacgca ccagcatcgc cgtaatcaaa attcgccccg gcttccgccc cctgataagt
     6421 acctggcata aagctccagt gcggcgctaa cagcgtttga ccagttggct gaatgtaacc
     6481 tgccctcgcc caaaccagac cgtatttaaa tttggccgca gctttataca ggcttatacc
     6541 gcttttgtcg ccggaccagt cttcgtcata ggctttatta ctttttgaaa acgcgatttc
     6601 gttcgggtgg gagctgtcgc cgttttccgc catttcaatc gccgtaaaca cagcaatatc
     6661 aaggccgaac atatcagcag cataaccgga ctgaaaatcg aggttggcat tccaggtgga
     6721 gtgagaaagg ttggttttgt atttgtcgcc gtcggtaaca tctttacggt cgcgttcacg
     6781 ctgccagtaa tatataccgc cggttaaggt tgaatcgtcg atgaatcctt cggcgcgagc
     6841 ctccggcatt gccataaagc ccgacattgc tgtaacaccg gcgatagcca gcgccagcgt
     6901 actacgtttg ccactaaacg tacgcatggg ttaatcctct ttgacgtata aattgctgca
     6961 ccaaaggtga acagcgaaaa aaataaaaat taaaaaagta gcattgagaa aagtctcgct
     7021 gactacagga atagactatt tttcgcgacg cgaattatca atctctttct gtaaccagaa
     7081 tgtaagaaca tgagcaaccg cacatatttt gatgattttt gttacaaggc ttaagtttgc
     7141 ggttgaaagg cttgcagaag aataaaagcg taaatttcca gcaagatgaa agcggttaca
     7201 ttttatttaa ttatggtttg tgattttaaa tttattttat ggataaattg cgaagcggaa
     7261 ttaattcgcg aagaaaagca gaaaaaacgc cgcagagtac ggcgtttggg attgtttgct
     7321 atttcttgcc ggatgcgacg taaatgcctc acccggcctg gtagaactta aaattactcg
     7381 cctactttcg cccaggtatc acgcagccca acggtgcggt taaataccgg tttttccgct
     7441 gtggaatggc ggctgtcgag gcagaagtaa ccttcacgct caaactggaa tgctttaccc
     7501 gcaaccgcat ctttcagcga cggttcagca aagccctgtt tgatcaccag cgattccggg
     7561 ttaatcaccg acaggaaatc atccgcagca cctgggttag gcacgctgaa cagacagtcg
     7621 tacagacgga tttcaaccgg cagcgcatgt gccgcgctca cccagtgaat aacacctttg
     7681 actttacgac catctgccgg atctttgctt aaggtgtcgg cgtcataagt acagaagatg
     7741 gtggtgatat tgccttcggc atctttctcc acgcgttctg ccttaatgac gtaagcatta
     7801 cgcagacgca cttctttacc cagcaccaga cgtttgtact gcttgttagc ttcttcgcgg
     7861 aaatcggcgc gatcgatcca aatctcaccg ctaaacggca cctggcggct acccatttcc
     7921 ggtttgttcg gatggttcgg catggtaacc atttcgcctt cgccctgata gttttcgata
     7981 accagtttca ccggatcgat aaccgccatt gcgcgcgggg cgttttcgtt gagatcttca
     8041 cggatgcagg attccagcga cgccatctca atggtgttgt cctgcttggt cacgccgatg
     8101 cgtttgcaga actcacgaat agaagcagca gtgtaaccac gacgacgcag accggaaatg
     8161 gtcggcatac gcgggtcatc ccagccttca acgtgcttgt cggtcaccag caggttcagc
     8221 ttacgcttgg acatcacagt gtattccaga ttcaggcgcg agaattcgta ctggcgcggg
     8281 tgaacaggaa tggtgatgtt gtccagcacc cagtcgtaca ggcgacggtt gtcctggaac
     8341 tcaagcgtac acagagagtg cgtaatacct tccagggcat cgctgatgca gtgggtgaag
     8401 tcgtacatcg ggtagatgca ccacttgttg ccagtctggt ggtgttcagc aaatttaatg
     8461 cggtacagca ccggatcgcg catcacgata aacggtgaag ccatgtcgat tttcgcacgc
     8521 aggcaggctt taccttcttc aaaaccaccg gcacgcattt tttcgaacag cgccaggttc
     8581 tcttcaacgc tgcggtcgcg gtacgggctg tttttacccg gttgcgtcag ggtgccgcgg
     8641 tattcgcgga tctgttccgg cgtcagttca tcaacgtacg ccaggccttt attgatcagt
     8701 tcgatcgcat aggcgtggag ctgatcaaaa taatcggagg agtaacggac gttaccagac
     8761 cagtgaaaac ctaaccactc tacgtcgttt ttgatcgact caacatactc gatatcttct
     8821 tttaccgggt tagtgtcgtc gaaacgcagg ttgcactggc ctttatagtc ctgggcgatc
     8881 ccgaagttca ggcagataga tttcgcatgg ccaatatgca gatagccatt cggctccggc
     8941 gggaaacggg tgtgtactgt ggtgtgctta ccactggcca gatcttcatc gatgatctga
     9001 cggataaagt tagtcgggcg ggcttctgcc tcactcatcg tggattcctc aaagcgtaaa
     9061 caacgtataa cggcgtatga tcttataagc gggacaggct gacaactgtt agttttttaa
     9121 aattgataat ctaacaagga ttatggggat gattgatgaa aaaaaaagcg gcagagaaga
     9181 tctccaccgc ttgtcattgt tggatgcgac gctcaagcgt cgcatcaggc ataaagcaga
     9241 ttactttttg atttcataca gcggtgtttg acccgccaca acatggccct gagctttaat
     9301 gatcaagcca ctgaaatcgt cgatattgct gcaaaccacc gggctaatca tcgagcgggc
     9361 gttagcgttc aggtaatcca gatccatttc cagaatcggt tgccctgcgc ttacctgcgc
     9421 accctcttcc accagacgtt taaagccttt accttccagc gctacggtgt cgatacccat
     9481 atggacgacg atctccgcgc ctttttcggt ttccaggcag aacgcgtggt tggtgttgaa
     9541 gattttcacg attgtccctg cggctggtga tacgacgatt ttatctgtcg gtttcaccgc
     9601 cacaccgtca cccaccgctt tgctggcgaa tgcttcgtca ggaacctgat ccagtgccac
     9661 gacatcaccg gtaatcggcg ataccagctc cgcgatagat accgcgtttg gtacagcctg
     9721 cggttttgct acaggcgcgg cagttgacgg agttgcttca gctgacgcag cggctaccgg
     9781 accacgggca acgactttct tcatcgcatc gccgatggat tctgctttcg cgccaacaat
     9841 cacctgaata gtctgtttgt tcagtttcac tacaccagaa gcacccagac gtttacacat
     9901 cgtatcgttg acgcgggcag agtcagccac ggtcaggcgc agacgggtga tacaggcgtc
     9961 aattgctttc aggttgtcag tgccaccaac cgcagcaata tagttggtcg ccagttgatt
    10021 gaggccttct tcagtgttgc tgttggcttc ttcagtaacg atctcgtctt ctttatcttc
    10081 acgacccggc gttttcaggt tgaacatgcg gataaccaaa ctgaacacca cgaagtagat
    10141 agcgaagaag acaacaccca tcaccagcag catccagacg ttctggctgg cggccggcag
    10201 attatacatc aacgcgtagt cgatagcccc cgcagagaaa gagaagccag catggatacc
    10261 cagcagtgtt gccacaaaca ggctgatacc ggtcagcagt gcgtgcagga ggtacagcag
    10321 cggtgcaagg aacatgaaca ggaattccag cggctcagtc acaccggtca ggaacgcagt
    10381 aacagcaaca gaaagcagca tcccgccaac catcggacga cgctctttcg gtgctgcgaa
    10441 gtacatcgcc agcgccgcac ccggcagacc gaacatcata atcgggaaga agccggacat
    10501 gaacatcccc gcggtgccgt caccggcata gaagcggttg atatcaccgt ggaaaaccgt
    10561 acccgccgcg ttggtgaatt caccaatctg gaaccaggcg atggtgttca gcacctgatg
    10621 cagaccggtt gggatcagca gacggttgat gaaaccaaag ataccggaac ccagcgcgcc
    10681 cgcagaaacg atccactcgc ctcctgcatg gatagcgtgc tgtaccggcg gccagacgta
    10741 accaaaaatg gccgccagca ccaggcagaa gaagccggtg gcaatcggca caaagcgttt
    10801 gccgccgaag aagctcagga agtccggcag tttaatatcg gaccaacggt tataggctgc
    10861 gccaccaacc agaccggtaa tgatacccgc cagtacaccc atgtttattt ctgggttgat
    10921 ggtcaccatc gctttggtta acacaaagta acctaccgca cccgccagcg ccgccgcacc
    10981 tgcgctgtct ttcgaccagc tggatgccac accgatggcg aagattaatg cgaggttatc
    11041 aaaaatcgca ccgcccgcct gggcaataaa cgcaacgtta agtaaatctg gctgaccgaa
    11101 tcgcagcaac agtgccgcca ccggcagcac cgcgataggg agctgtaacg ccctaccgag
    11161 tcgctggaaa aaacctaaaa tattcatctt attcccccta cgagaaccct atttggctcg
    11221 tttaaagccg tatttttatt ttgctgcaaa ttgtactgcc gatgttctgt aatcagattg
    11281 ttagataatc tgctacagag tgtgtgaaaa tttaattcgt atcgcaaatt aaacgcgtgt
    11341 cttttgtgag ttttgtcacc aaatatcgtt atcatcactc ccttttactg gctaaaccag
    11401 aaaacttatt ttatcattca aaaaaatcag gtcggattga cgcctgtctg cgcaaatcca
    11461 ggttacgctt aaagatgcct aatccgccaa cggcttacat tttacttatt gaggtgaata
    11521 atgagactga tccccctgac taccgctgaa caggtcggca aatgggctgc tcgccatatc
    11581 gtcaatcgta tcaatgcgtt caaaccgact gccgatcgtc cgtttgttct gggcctgcca
    11641 actggcggca cgccgatgac cacctataaa gcgttagtcg aaatgcataa agcaggccag
    11701 gtcagcttta agcacgttgt caccttcaac atggacgaat atgtcggtct gccgaaagag
    11761 catccggaaa gctactacag ctttatgcac cgtaatttct tcgatcacgt tgatattcca
    11821 gcagaaaaca tcaaccttct caacggcaac gccccggata tcgacgccga atgccgccag
    11881 tatgaagaaa aaatccgttc ttacggaaaa attcatctgt ttatgggcgg tgtaggtaac
    11941 gacggccata ttgcatttaa cgaaccggcg tcttctctgg cttctcgtac tcgtatcaaa
    12001 accctgactc atgacactcg cgtcgcgaac tctcgtttct ttgataacga tgtcaatcag
    12061 gtgccaaaat atgccctgac tgtcggtgtt ggtacattgc tggatgccga agaagtgatg
    12121 attctggtgc tgggtagcca gaaagcactg gcactgcagg ctgcagttga aggttgcgtg
    12181 aaccacatgt ggaccatcag ctgtctgcaa ctgcatccaa aagcgatcat ggtgtgcgat
    12241 gaaccttcca ccatggagct gaaagttaag actttaagat atttcaatga attagaagca
    12301 gaaaatatca aaggtctgta attgttatcc ctgccctggc tccttgctca gggcaatatt
    12361 ttttaaaatc gggggtcaga atgtatgcat taacccaggg ccggatcttt accggccacg
    12421 aatttcttga tgaccacgcg gttgttatcg ctgatggcct gattaaaagc gtctgtccgg
    12481 tagcggaact gccgccagag atcgaacaac gttcactgaa cggggccatt ctctcccccg
    12541 gttttatcga tgtgcagtta aacggctgcg gcggcgtaca gtttaacgac accgctgaag
    12601 cggtcagcgt ggaaacgctg gaaatcatgc agaaagccaa tgagaaatca ggctgtacta
    12661 actatctgcc gacgcttatc accaccagcg atgagctgat gaaacagggc gtgcgcgtta
    12721 tgcgcgagta cctggcaaga catccgaatc aggcgttagg tctgcatctg gaaggtccgt
    12781 ggctgaatct ggtaaaaaaa ggcacccata atccgaattt tgtgcgtaag cctgatgccg
    12841 cgctggtcga tttcctgtgt gaaaacgccg acgtcattac caaagtgacc ctggcaccgg
    12901 aaatggttcc tgcggaagtc atcagcaaac tggcaaatgc cgggattgtg gtttctgccg
    12961 gtcactccaa cgcgacgttg aaagaagcga aagccggttt ccgcgcgggg attacctttg
    13021 ccacccatct gtacaacgcg atgccgtata ttaccggtcg tgaaccgggc ctggcgggcg
    13081 cgatcctcga cgaagctgac atttattgcg gtattatcgc tgatggcctg catgttgatt
    13141 acgccaacat tcgtaacgct aaacgcctta aaggcgacaa actgtgtctg gttaccgacg
    13201 ccaccgcgcc agcaggtgcc aacattgaac agttcatttt tgcgggtaaa acaatatact
    13261 accgtaacgg actttgtgtg gatgagaacg gtacgttaag cggttcatcc ttaaccatga
    13321 ttgaaggcgt gcgtaatctg gtcgaacatt gcggtatcgc actggatgaa gtgctgcgta
    13381 tggcgacgct ctatccggcg cgtgcgattg gcgttgagaa acgtctcggc acactcgccg
    13441 caggtaaagt agccaacctg accgcattca cacctgattt taaaatcacc aagaccatcg
    13501 ttaacggtaa cgaggtcgta actcaataag agaaagtatg acaccaggcg gacaagctca
    13561 gataggtaat gttgatctcg taaaacagct taacagcgcg gcggtttatc gcctgattga
    13621 ccagtacggg ccaatctcgc ggattcagat tgccgagcaa agccagcttg cccccgccag
    13681 cgtaaccaaa attacgcgtc agcttatcga acgcgggctg atcaaagaag ttgatcagca
    13741 ggcctccacc gggggccgcc gcgctatctc catcgtcacc gaaacccgca atttccacgc
    13801 aatcggcgta cggcttggtc gtcacgacgc caccatcacc ctgtttgatc tcagcagcaa
    13861 agtgctggca gaagaacatt acccgctgcc ggaacgtacc cagcaaacgc tggaacatgc
    13921 cctgttgaat gccattgctc agtttattga tagctaccag cgcaaactgc gcgagctgat
    13981 cgcgatttcg gtgatcctgc cagggcttgt tgacccggac agcagcaaaa ttcattacat
    14041 gccgcatatt caggtagaaa actgggggct ggtagaagct ctggaagaac gttttaaagt
    14101 gacctgtttc gttggtcacg atatccgtag tctggcgctg gcggagcact acttcggtgc
    14161 aagtcaggat tgcgaagact ccattctggt gcgtgtccat cgcggaaccg gggccgggat
    14221 tatctctaac gggcgcattt ttattggccg caacggtaac gtcggtgaaa ttggccatat
    14281 tcaggtcgaa ccgctgggtg aacgctgcca ctgcggcaac tttggctgcc tggaaactat
    14341 cgccgccaac gctgccattg aacaacgggt gttgaatctg ttaaagcagg gctaccagag
    14401 ccgcgtgccg ctggacgact gcaccatcaa aactatctgc aaagccgcga acaaaggcga
    14461 tagtctggcg tcggaagtaa ttgagtatgt cggtcgtcat ctgggtaaaa ccatcgccat
    14521 tgctatcaac ttatttaatc cgcaaaaaat tgttattgcc ggtgaaatca ccgaagccga
    14581 taaagtgctg ctccctgcta ttgaaagctg cattaatacc caggcgctga aggcgtttcg
    14641 cactaatctg ccggtggtac gttctgagct ggatcaccgc tcggcaatcg gcgcttttgc
    14701 gctggtaaaa cgcgccatgc tcaacggtat tttgctccag catttgctgg aaaattaatg
    14761 tgcttttata gtggcgctta ttgttgtcaa tattctgggt agtccatgac cattaaaaat
    14821 gtaatttgcg atatcgacgg cgtgctgatg cacgataacg tcgccgtacc gggtgcagcg
    14881 gaatttttgc acgggattat ggataaaggc ctgccgctgg tgttgctgac caactatcct
    14941 tcgcagactg ggcaagatct ggcgaaccgc tttaccaccg caggtgtcga tgtacctgac
    15001 agcgtgtttt atacctctgc gatggcgact gccgatttcc tgcgtcgcca ggaaggcaag
    15061 aaagcgtatg tggtgggcga aggcgcactg attcatgaac tgtacaaagc cggtttcact
    15121 attaccgatg tgaaccctga tttcgtgatt gttggcgaaa cgcgttccta caactgggac
    15181 atgatgcata aagcagccta tttcgtcgct aacggtgcac gttttatcgc caccaatccg
    15241 gacacccacg ggcgcggttt ttatcccgcg tgtggcgcgt tgtgtgcagg catcgaaaaa
    15301 atctccgggc gtaaaccgtt ctatgttggt aaaccgagtc cgtggatcat ccgcgcggca
    15361 ttaaacaaaa tgcaggcgca ttcggaagaa acggtgattg tcggcgataa cctgcgtacc
    15421 gatattctgg cgggcttcca ggcaggtctg gaaacgattc tggtgctttc tggtgtttca
    15481 tcgctcgacg atatcgacag tatgccgttc cgcccaagct ggatttaccc gtcggtcgct
    15541 gaaatcgacg ttatctgaat agcaaccacg tccgcggacg tggttggctc tgatgacaaa
    15601 cgccaaactg cctgatgcgc tacgcttatc aggcctacgc agctcctgca atatattgaa
    15661 ttttcatgct tttgtaggcc ggataaggcg ttcacgccgc atccggcatg aacaaattgc
    15721 actttgtcag caatttggcc cccgtaaaat ataaacattc aataaaaccc gctaaaaatt
    15781 atcgattcat caataaatat atcctcacac cagacctttt ttcaccaatc gacaatcacc
    15841 attacgtttt ttattttttc accgccaaat cgcttgcgca cagtgctgct ttgcggcatt
    15901 tttttaaaca agcaaacaca acaagcaaca aataccaggt taacggagaa ggttatgtgt
    15961 tcaatttttg gcgtattcga tatcaaaaca gacgcagttg agctgcgtaa gaaagcactc
    16021 gagctgtcac gcctgatgcg tcatcgtggc ccggactggt ccggtattta tgccagcgat
    16081 aacgccattc tcgctcacga acgtctgtca attgttgacg ttaacgcggg ggcgcaacct
    16141 ctctacaacc aacaaaaaac ccacgtactg gcggtaaacg gtgaaatcta caaccaccag
    16201 gcattgcgcg ctgaatatgg cgatcgttat cagttccaga cagggtctga ctgtgaagtg
    16261 atcctcgcgc tgtatcagga aaaagggccg gaatttctcg acgacttgca gggcatgttt
    16321 gcctttgccc tgtacgacag cgaaaaagat gcctacctga ttggtcgcga ccatctgggg
    16381 atcatcccac tgtatatggg ctatgacgaa cacggtcagc tgtatgtgac ctcagaaatg
    16441 aaatcgctgg tgccagtttg ccgcacgatt aaagagttcc cggcggggag ctatttgtgg
    16501 agccaggacg gcgaaatccg ttcttattat catcgcgact ggttcgactt tgatgcagtg
    16561 aaagataacg tgaccgacaa aaacgagctg cgtcaggctc tggaagattc cgttaaaagc
    16621 catctgatgt ctgatgtgcc ttacggtgtg ctgctttctg gtggtctgga ttcctcaatt
    16681 atttccgcta tcaccaagaa atacgcagcc cgtcgcgtgg aagatcagga acgctctgaa
    16741 gcctggtggc cgcagttaca ctcctttgct gtaggtctgc cgggttcacc ggatcttaaa
    16801 gcagcccagg aagtggcaaa ccatctgggc acggtgcatc acgaaattca cttcactgta
    16861 caggaaggtc tggataccat ccgcgacgtg atttaccaca tcgaaactta tgatgtgacc
    16921 actattcgcg cttcaacacc gatgtattta atgtcgcgta agatcaaggc gatgggcatt
    16981 aaaatggtgc tgtccggtga aggttctgat gaagtgtttg gcggttatct ttacttccat
    17041 aaagcgccca acgctaaaga actgcatgaa gagacggtgc gtaaactgct ggccctgcat
    17101 atgtatgact gcgcgcgcgc caacaaagcg atgtcagcct ggggcgtgga agcacgcgtt
    17161 ccgttcctcg acaaaaaatt ccttgatgtg gcgatgcgca ttaacccgca ggataaaatg
    17221 tgcggtaacg gcaaaatgga aaaacacatc ctgcgtgaat gttttgagtc atacctgccc
    17281 gcaagcgtgg cctggcggca gaaagagcag ttctccgatg gcgtcggtta cagttggatc
    17341 gacaccctga aagaagtggc ggcgcagcag gtttctaatc agcaactgga aactgcccgc
    17401 ttccgcttcc cgtacaacac gccaacctca aaagaagcgt atctgtaccg ggagatcttt
    17461 gaagaactgt tcccgcttcc gagcgccgct gagtgcgtgc ctggcggtcc ttccgtcgcg
    17521 tgttcttccg ctaaagcgat cgaatgggat gaagcgttca agaaaatgga cgatccatct
    17581 ggtcgtgcgg ttggtgttca ccagtcggca tataagtaag aaatgcgaaa cagccccggt
    17641 gaaatccggg gctgtttcag ttattgaggt gcttgttgat tctgatatgc agtaaggaaa
    17701 tgttccgggt ttgccacatc actgtttgac aactcatcac tgtaggccag tatttcatag
    17761 attaatttcc caccactatt gttgaattcc gaatttcatc ctgtacgaca aaagaatggc
    17821 tgtagggtgg ggaaaaaaca caaagtaaac aataattgac gaatatagcg ccacgctgtt
    17881 cgcaacctaa ccaaacagtc actttcgagc aattttcctt gaaaaagagg ttgacgctgc
    17941 aaggctctat acgcataatg cgccccgcaa cgccgataag gtatcgcgaa aaaaaagatg
    18001 gctacgtagc tcagttggtt agagcacatc actcataatg atggggtcac aggttcgaat
    18061 cccgtcgtag ccaccatctt ttttgcggga gtggcgaaat tggtagacgc accagattta
    18121 ggttctggcg ccgcaaggtg tgcgagttca agtctcgcct cccgcaccat tcaccagaaa
    18181 gcgttgtacg gatggggtat cgccaagcgg taaggcaccg gtttttgata ccggcattcc
    18241 ctggttcgaa tccaggtacc ccagccatct tcttcgagta agcggttcac cgcccggtta
    18301 ttggggtatc gccaagcggt aaggcaccgg tttttgatac cggcattccc tggttcgaat
    18361 ccaggtaccc cagccatcga agaaacaatc tggctacgta gctcagttgg ttagagcaca
    18421 tcactcataa tgatggggtc acaggttcga atcccgtcgt agccaccaaa ttctgaatgt
    18481 gtcgaatacg ttcggcaaat tcaaaaacca atttgttggg gtatcgccaa gcggtaaggc
    18541 accggattct gattccggca ttccgaggtt cgaaccctcg taccccagcc aatttattca
    18601 agacgcttac atcgtaagtg cacccagttg gggtatcgcc aagcggtaag gcaccggatt
    18661 ctgattccgg cattccgagg ttcgaatcct cgtaccccag ccacattaaa aaagctcgct
    18721 tcggcgagct ttttgctttt ctgcgttcat tcaatgtcga atgcgatgtt gacacgtctt
    18781 atccttcaat gtcggatgcg acgctgccgc gtcttatccg acctacggtt ggcacgcatc
    18841 cggcaatgtt gtaaggctac aaccctaacg catatttcag cgcctgacgt ttcaacacgc
    18901 cagcacgctc tgccgccatt aacccgagat tacgcacaaa acgcagcggc ggcagattat
    18961 tactgaatcc agcataaaac agatccatac cactttgcat aatgaagtta tccgccatgc
    19021 gccgcatctg gtaacgcttg aggacaggat aactggccca cgcttcaccg taactgcggg
    19081 cattcaccag aacatcaatc agggcatcga catcacgata accaagattc accccctgcc
    19141 ccgccagcgg atggatggta tgcgcggcat cgcccaccag cgcaagcccc ggctgcacat
    19201 actgcaacgc atgtcggcgc gtcagcggaa acgcaccagc ggcaagcggt gtaacgtaac
    19261 ccagacgcga cgggaaatgc ttcgcgattt ccgcctggag ttgcgccata ttcatattct
    19321 gcaactggcg aatacgcgcc ggagagtcat accacaccag cgatgcccag ttatcaaaca
    19381 acggcagaaa cgcacgcggt ccgtccgggg taaattgctg ccaggtgctg tcgccgggat
    19441 cgttctcaca ctgtacgcta atcaacatgc acgactgcgc atactgccag gcatgaacgc
    19501 caattcccgc catctgccgc acctgagaat ttgcgccgtc ggcaccaatc accagtttcg
    19561 cgcggatcgt ttcaccgccc ttcagttcca gctcctgaag atcattatct cgatgtaatg
    19621 caatcagcga gcctggcaca cgtaacgtta ctttcggatg cgcttccagc gcctgccaca
    19681 gcgcctgttg caggacggtg ttttccacca tatagccaag caacggtagc ttaagttcag
    19741 cggcgtcaaa caccacatgc gccgtttccc actcccacgt ttccagtctg cggtaaggat
    19801 ggcaacgcat agcctgtact gcatcccaga cccctaaccc tttaagcaat gataccgatg
    19861 cggcgctgat cgccgagatc cgcacgtccg gttggctatc agcgacaaac ggtgcaggtt
    19921 ctgcgtgctc gatcaccgtt accgaaaatc cgtgctgtgc cagccccagc gccagcgcgc
    19981 cgccgaccat tcctccgccg acaatggcaa tttccgttgg ttgatttgtc atggtcaatc
    20041 atcctgttag caatatgctt taagtttaca ggatttttac ccccaagggc tgataacgct
    20101 catactggcc acaacggcag caaagcatta cactatgcgc cctgcattcc tggctactat
    20161 ttcgcaagag caagtcgatg accaaaaaac tccatattaa aacctggggc tgtcagatga
    20221 acgagtacga ttcatcgaag atggccgatc tgctggatgc cacccacggc tatcaactga
    20281 ccgacgtggc ggaagaagcg gatgtgctgc tgctgaacac ctgctcaatc cgcgagaagg
    20341 ctcaggaaaa agtcttccat cagttgggtc gctggaaact gttaaaagag aagaatccag
    20401 acctgattat cggcgtcggt ggctgcgtgg catcgcaaga aggcgagcac attcgccagc
    20461 gcgcccacta tgtcgatatt atttttgggc cgcaaacgct gcaccgtctg ccggagatga
    20521 tcaactccgt gcgcggcgac cgcagcccgg ttgtagatat cagcttcccg gaaatcgaga
    20581 agtttgaccg tctaccggaa ccgcgcgccg aagggccgac cgcgtttgtc tccatcatgg
    20641 aaggctgcaa taaatattgc acctactgcg tggtgcctta cacccgtggt gaagaggtaa
    20701 gccgtccgtc tgacgatatt ctgtttgaga ttgcccagct tgcggctcag ggcgtgcgtg
    20761 aagtcaacct gctcggtcag aacgtgaacg cctggcgtgg tgaaaactac gacggctcca
    20821 ccggatcgtt tgccgatctg ctgcgtctgg ttgctgcgat cgacgggatc gatcgtattc
    20881 gctttaccac cagccatccg atcgaattca ccgacgatat catcgaagtg tatcgcgaca
    20941 cgccggagct ggtgagcttc ctgcatctgc cggtacagag cggttccgat cgcattctga
    21001 acctgatggg ccgtactcat acggcactgg agtacaaagc gatcatccgt aaactgcgtg
    21061 cggcgcgtcc agatattcag atcagttctg atttcatcgt tggcttccct ggcgaaacca
    21121 ccgaagactt cgagaaaacg atgaagctga ttgccgacgt caatttcgac atgagctaca
    21181 gctttatctt ctctgcacgt ccgggtacac cagccgccga tatggttgat gatgttccgg
    21241 aagaagagaa gaagcagcgt ctgtatattc tgcaagaacg tatcaatcag caagcgatgg
    21301 catggagccg ccggatgctc ggcaccaccc agcgtattct ggtagaaggg acttcgcgta
    21361 agagcatcat ggagctttcc gggcgtaccg aaaataaccg cgtggtcaac ttcgagggca
    21421 caccggatat gatcggtaaa ttcgtcgatg tagaaattac cgacgtctac ccgaactctc
    21481 tgcgcggtaa agtggtgcgt actgaagatg aaatgggcct gcgcgtggca gaaacaccgg
    21541 aatcggtgat tgcccgtacc cgcaaagaaa acgaccttgg cgtgggttat tatcagccgt
    21601 aattctcagg cccgccgttc cggtgggcct tgttttttct ctctttatcc ccatctttat
    21661 cgcaatgctt gcgccttttt cctgtggcgt gaataatttc cttataggcc ggtgaatgtt
    21721 cagcttccgg cggcatacag ataagaggaa cggtttgaac atagacactc gcgaaatcac
    21781 cctggagcca gcagacaacg cgcgtctgtt gagcctgtgc ggcccgtttg atgacaacat
    21841 caagcagctc gaacgccgtc tcggcatcga gatcaatcgc cgcgacaacc actttaaact
    21901 gaccggccgt ccgatttgcg tcaccgctgc ggcagacatt ctgcgtagcc tgtatgtcga
    21961 tacagccccg atgcgcggtc agattcagga tatcgaaccg gaacagatcc accttacgat
    22021 taaagaagcg cgagtactgg agcaaagtgc ggagagcgtg ccggagtacg gcaaagcggt
    22081 caatatcaaa accaaacgcg gcgtaattaa gccgcgcacg ccaaaccagg cgcagtacat
    22141 cgccaatatt ctcgaccatg acattacctt cggcgttggc ccggcgggta cgggtaaaac
    22201 ctacctggca gtggctgcgg cagttgatgc cctggagcgt caggagattc gccgtattct
    22261 gctgactcgt ccggcggtcg aagccggtga gaaactgggc ttcctgcctg gcgatttaag
    22321 ccagaaagta gacccgtatc tgcgcccact gtacgacgcg ctgtttgaaa tgctgggctt
    22381 tgagaaagtt gagaaactga ttgagcgcaa cgttattgaa gtcgcgccgc tggcctatat
    22441 gcgtggtcgt acgctgaacg acgcgtttat cattctcgat gagagccaga acaccaccat
    22501 cgaacagatg aagatgttcc tgacccgtat cggttttaac tcaaaagcgg ttatcaccgg
    22561 cgacgtcaca cagatcgacc tgccgcgtaa tactaaatca ggcttacgtc acgccatcga
    22621 agtactggcc gatgtcgaag agatcagctt taacttcttc cacagcgaag acgtggttcg
    22681 tcaccctgtg gtggcgcgta tcgttaacgc ctatgaagcc tgggaagaag ccgaacaaaa
    22741 acgaaaagcg gcgctggcgg cagaacgcaa gcgcgaagaa caggaacaaa aatgagtcag
    22801 gtgatcctcg atttacaact ggcatgtgaa gataattccg ggttaccgga agagagccag
    22861 tttcaaacat ggctgaatgc ggtgatcccg cagtttcagg aagaatcgga agtgactatt
    22921 cgcgtggtcg ataccgccga aagccacagt ctgaatctga cctatcgcgg taaggataag
    22981 ccgaccaacg tgctctcctt cccgtttgaa gtgccgcctg gcatggaaat gtcgctactg
    23041 ggcgatctgg ttatctgccg tcaggtggtt gagaaggaag ctcaggagca aggcaaacca
    23101 ctggaggcgc actgggcgca tatggtggtg cacggcagtc tgcatttgtt aggttacgat
    23161 cacatcgaag atgacgaagc agaagaaatg gaagccctcg aaacaaagat tatgcttgct
    23221 ctgggctatg aggatccgta cattgccgag aaagaataat ttgccaggca tttgactggc
    23281 agacgtcccc gccgttggtg attaacgacg gcgttttgat taactaacat gagaacccat
    23341 acgacgccat gagcgacgac aattcacaca gtagtgacac gataagcaac aagaagggat
    23401 ttttctccct gttactcagc caacttttcc acggtgaacc gaaaaaccgt gacgaactgc
    23461 tggcgctgat ccgtgattcc gggcagaacg accttatcga cgaagatacg cgcgatatgc
    23521 tcgaaggggt gatggacatc gcagaccaac gcgttcgcga catcatgatc ccccgctccc
    23581 agatgattac cctgaaacgc aaccagacgc tggacgaatg ccttgatgtc atcatcgagt
    23641 ccgcccactc acgtttcccg gtgattagcg aagacaaaga tcacattgaa gggattctga
    23701 tggcgaaaga cttgctgccg tttatgcgca gcgatgctga agccttcagc atggacaaag
    23761 tgttacgtca ggcggttgtc gttcctgaaa gtaagcgcgt agaccggatg ctgaaagagt
    23821 ttcgctctca gcgttaccac atggcgatcg tcattgacga attcggtggg gtttccggtc
    23881 tggtgaccat tgaagacatc ctggaactga ttgttggtga gattgaagac gaatatgacg
    23941 aagaagatga tatcgacttc cgtcagctga gtcgtcatac ctggaccgtg cgcgcactgg
    24001 cttccattga agacttcaac gaagcgttcg gcacccactt tagcgatgaa gaagtcgaca
    24061 ctatcggtgg tctggtgatg caggcgtttg ggcatcttcc ggcgcgtggc gaaactatcg
    24121 acatcgacgg ttaccagttc aaagtggcga tggccgacag tcgacgtatt attcaggttc
    24181 atgtcaaaat cccggatgac tcaccccagc cgaagctgga tgaataaaac cgaaactgga
    24241 tagataacta catggctttt gcctcattaa ttgaacgcca gcgcattcgc ctgctgctgg
    24301 cgttattatt cggtgcctgc ggaacgctgg ccttctctcc ttacgacgtc tggcctgcgg
    24361 cgattatttc gttgatgggg cttcaggcgt tgacctttaa ccgccgtcca ctccagtctg
    24421 ccgctattgg cttttgctgg ggatttggcc tctttggcag cggtattaac tgggtctatg
    24481 tcagcatcgc gacctttggc ggaatgcctg gcccggttaa catcttcctg gtggtggtgc
    24541 tggcggcgta tttgtcgctg tataccggac tgtttgctgg cgtgctgtcg cgtctgtggc
    24601 cgaaaaccac ctggctgcgc gtggcgattg ccgcccctgc tctctggcaa gtgaccgagt
    24661 ttctgcgcgg ttgggtactg acaggcttcc cgtggttaca gttcggctat agccagattg
    24721 atggcccgtt aaaagggctg gcaccgataa tgggcgtgga agccattaac ttcctgctga
    24781 tgatggttag tggcctgctg gcactggcgt tggtcaaacg caactggcgt ccgctggtgg
    24841 tggccgtcgt gctgtttgcc ctacccttcc cgctgcgtta catccaatgg tttaccccgc
    24901 aaccggagaa aaccattcag gtttcgatgg ttcagggcga tattccgcaa tcactgaaat
    24961 gggatggaga tcagcttctt aatacgctga agatttacta caacgcaacg gctccgctga
    25021 tgggcaaatc atcgttgatt atctggccgg agtcggcgat aaccgatctg gaaattaatc
    25081 agcaaccgtt cctcaaagca ctggacggtg agttgcgcga taaaggtagc tcgctggtaa
    25141 ccgggattgt cgacgcgcgt ctcaataagc agaaccgcta cgatacctac aacaccatca
    25201 tcacactggg taaaggtgca ccgtacagct acgaatcagc cgatcgctat aacaaaaacc
    25261 atctggtgcc gtttggcgag tttgtcccgc tggagtcgat tctgcgtccg ttagcaccgt
    25321 tctttgatct gccgatgtcg tcgttcagcc gtgggccata tatccagccg ccgctgtcag
    25381 taaatggtat tgagcttact gcggctattt gctacgagat cattctcggc gagcaagtgc
    25441 gcgataactt ccgcccggat accgactatc tgctgactat ctccaacgat gcgtggtttg
    25501 gtaaatctat tggtccatgg caacacttcc agatggcgcg aatgcgtgcg ctggagctgg
    25561 cgcgcccact gttgcgcagc accaacaacg gcattacggc ggtgattggc ccgcagggtg
    25621 agattcaggc gatgatcccg cagttcaccc gcgaggtgtt aaccactaat gtgacaccga
    25681 ccaccggact cacaccgtat gcacgtaccg gcaactggcc actgtgggtg ctgacggcac
    25741 tgtttggttt tgccgctgtg ttgatgagtc tacgagcacg taaacgttga tgtgcctgat
    25801 gtatcctgca tgagcaaaac gtactttctc attgagcttt ggggcatggt tatcatgccc
    25861 ctttttctta cggttcaggg atacaagcca cattgccata ttggggatga cgaataattg
    25921 cctgcggatc aagcgagcgc gtcctgtcca tttggatcaa cccgttcttc gccatgacaa
    25981 atatttttct accatccgct gaaaaacgaa ggtgattaac gtagctggca ggataaacgc
    26041 caataatctg cccggcatta atattgagca ggatgacata accttgcagg ccatatgaca
    26101 ccaacgctaa atattgaccg tccgggctaa taccctcaac ggaataaacg ctcctgctac
    26161 accattgcgt cataatgctg gcttgttgat cccctacgct tatacgtgaa atcccctgac
    26221 tatctgcaaa aataacctcg ccgttttcag gtcgaaaacg catcgccgat atcgttccac
    26281 gcgcatcacc tgcgggaaag tcttctttct gatgcgtgat ggtattgatc cgcacgatgt
    26341 tacctctgcc tgctcccgga accagtaatg ttctttcatc cggggaaagt gccataaccc
    26401 aggcgcctgg tttaccgctc gtccccgccc cgtcgtattt ctccagcggg atatccgcca
    26461 catgctgata agtcaccaga tcaatcgctg acacactatt actggtgcga ttcatcaccc
    26521 aggcttttgt gccatcacgc gagaggataa ggctgtcagg atgtgcaccg gtggtaatcg
    26581 actgaataat ctcccctgtc gccacgttaa tgaccgataa cgcattcgct tcaaatgaag
    26641 tcgcataaat caacttttca tccgggctta atgccagcga tctgacgccc tgatctttac
    26701 agccaccaca atgtttgact gacttttctt tcgctatggg cgctgtaaag gtatgcagga
    26761 ttttcttttg tccgaggtcg aaaacaacaa tgctgttcgt gttttcaatt gcggcataca
    26821 acatattacc atcccgactg atcgccatat catggatatc ggcaatctca gcgagcaaat
    26881 caccactggc ctgttcacga cttaccggag cggataatgt ttccttgagg gcgttgcgtt
    26941 cctccgctaa ctgctgcttt ttttgccgtc gctcttgttc aatctcctgt ggataaaacg
    27001 cttcacgcag actttgcctg acttgtaaaa ctgactcatc catctgctgc tgcgcaagcc
    27061 agatagcccc ggtcagaaga agactgcccg caacaataat cccgccttcc gtaacgagtc
    27121 ggttttgccc agataaacgc gcgctcagcc aacccaacgc gccacccgca atcaggccgc
    27181 caatgtgaca agcattatct attcctgttt gccgggcacc atacaacagt gtcagcgcca
    27241 ccatacccaa cagagaaaat actcgccgct ggtttttatg gtatgtgccc gcacctgaag
    27301 caagctgtgt tgctatcgca gcgccagcta ttcccataat tgccccgaat gccccaacgc
    27361 tgatgactat ctgatcacta tcgcgtaacg cataacaggc gctgatgagc ccaccaaaga
    27421 cgccggagaa taaccaggta atcaggagtc gccatttccc cagaatctgt tccgccacgc
    27481 ctcccacgac caggaatgca aacatattca tcagcagatg agaaacacta ctgtgcagaa
    27541 agatactgct caataagcgc cagggttcac ccgacaaagt aagaggcgca acgtttgcgc
    27601 cgagatggat aagtgcggat tgatcgacct cttcataact catccattgt gcgagataac
    27661 aaaatatccc aatacagagt gcaaaaagga taagggttat tgcgggtaat tgaacattta
    27721 acggcttaac cgaagatgca gacataaggt gtttcttcct tgaaaagaca ggtaaaaagc
    27781 atttttcccg tgtgcagtta tcatcccggc aaacgtccca tgccgaaaag ataattctgt
    27841 ccgaaatatg actttttcag cctaaaatta caatcgtaat taatttgccc ctaagtattt
    27901 tttggcatgt aagttgcttt atttactgtg taagcgatga aatcagccgc gacgcaacca
    27961 ggttgcacca ccacaaatca gcggtagcac caaaaaggtg cggtttaaga attttgcttc
    28021 ggaatggtgc ggcgcatctc gcaaaaacaa acaataaaac agcaatatct ttacatttag
    28081 ccaaactaaa tgttacctaa caggcacaac actgcacaat aaagttgcag acgataacaa
    28141 cacaaacact cacaacgggt atccatgcgt tcttaacgca gaagataaag gagttggata
    28201 tgcaattacg taaacctgcc acagcaatcc tcgccctggc gctttccgca ggactggcac
    28261 aggcagatga cgccgccccg gcagcaggca gtacgcagta cgcagtacgc tggacaaaat
    28321 cgccaaaaac ggtgtgattg tcgtcggtca ccgtgaatct tcagtacctt tctcttatta
    28381 cgacaatcag caaaaagtgg tgggttactc gcaggattac tccaacgcca ttgttgaagc
    28441 agtgaaaaag aaactcaaca aaccggactt gcaggtaaaa ctgattccga ttacctcaca
    28501 aaaccgtatt ccactgctgc aaaacggcac tttcgatttt gaatgtggtt ctaccaccaa
    28561 caacgtcgaa cgccaaaaac aggcggcttt ctctgatact attttcgtgg tcggtacgcg
    28621 cctgctgacc aaaaagggcg gcgatatcaa agattttgcc gacctgaaag acaaagccgt
    28681 agtcgtcact tccggcacta cctctgaagt tttgctcaac aaactgaatg aagagcaaaa
    28741 aatgaatatg cgcatcatca gcgccaaaga tcacggtgac tctttccgca ccctggaaag
    28801 cggtcgtgcc gttgccttta tgatggatga tgccctgctg gccggtgaac gtgcgaaagc
    28861 gaagaaacca gacaactggg atatcgtcgg caagccgcag tctcaggaag cctacggttg
    28921 catgttgcgt aaagatgatc cgcagttcaa aaagctgatg gatgacacta tcgctcaggt
    28981 gcagacttcc ggtgaagcgg aaaaatggtt tgataaatgg ttcaaaaatc caattccgcc
    29041 gaaaaacctg aacatgaatt tcgaactgtc agacgaaatg aaagcactgt tcaaagaacc
    29101 gaatgacaaa gcactgaact aattacaaga accaggggcg gaaattccag ccctctcgat
    29161 tgttacgtag cacggacaga ctatacgcct gatggtcgtt ccccatcggg cctgaaaacc
    29221 gcaatacgct gggtaacaat cttcgagggt agcagttaac gctgctaccc tcttttttct
    29281 ggagtagatt tatgtctata gactggaact ggggtatttt tttacaacaa gccccgttcg
    29341 gcaacaccac ctatcttggt tggatctgga gtggttttca ggtgacgatc gctttgtcga
    29401 tctgcgcctg gattatcgct ttcctcgtcg gttcattttt cggcatttta cgtaccgttc
    29461 caaaccgttt tctctccggt ctgggtacgt tgtatgtcga actgttccgc aacgtgccgt
    29521 tgattgtgca attctttacc tggtatctgg tgatcccgga gctgttgccg gagaaaatcg
    29581 gcatgtggtt taaggccgag ctggatccca atattcagtt tttcctttca tccatgctct
    29641 gcctggggct gtttaccgcc gcccgtgttt gcgaacaggt acgcgccgcc attcagtcgt
    29701 tgccgcgtgg gcaaaaaaat gccgcgctgg cgatgggcct gacgctaccg caggcttatc
    29761 gatacgtact gctgcctaat gcttatcgcg ttatcgtccc gccgatgact tccgagatga
    29821 tgaacctggt gaaaaactcc gccatcgcct cgactattgg tctggtggat atggcggcgc
    29881 aggcgggtaa attgcttgat tactcagccc acgcctggga gtcgtttacc gctattacgc
    29941 tggcgtatgt gttgattaac gcgattatca tgctggtaat gacgctggtt gaacgtaaag
    30001 ttcgcctgcc tggcaacatg gggggcaaat aatgtacgag tttgactgga gttccattgt
    30061 cccttccctg ccatatctgc tcgacgggct ggtgatcacg ctgaaaatca ccgtcacggc
    30121 agtcgtgatt ggtattttgt ggggcaccat gctggcggtg atgcgcttgt ccagctttgc
    30181 gcccgtagcg tggtttgcca aagcctacgt taacgtattc cgctcgattc ctttagttat
    30241 ggttttgctg tggttttacc tgatcgtgcc aggttttctg caaaacgtgc tgggattatc
    30301 accaaaaaat gatatccgtt taatttcggc gatggtggcg ttttcgatgt ttgaagcggc
    30361 ctactattca gagattatcc gtgctggtat tcaaagtatt tctcgtggtc agtcgagcgc
    30421 cgcgctggcg ttgggaatga ctcactggca gtcgatgaaa ctgattattc tgccgcaggc
    30481 gttccgcgcg atggtgccgc ttctgctcac tcagggcatc gtactgttcc aggatacctc
    30541 actggtgtat gtgttatctc tggccgattt cttccgtacc gcctcaacca ttggtgagcg
    30601 tgatggtacg caggttgaga tgatcctgtt tgccggattt gtttatttcg ttattagtct
    30661 tagcgcgtcg ttgttggtca gctacttgaa aagaaggaca gcataatgat taccctgaaa
    30721 aatgtttcaa aatggtatgg tcactttcag gtgctgaccg actgctcaac cgaagtgaaa
    30781 aaaggcgaag tggtggtggt ttgcggcccg tctggttccg gcaaatcaac gctgattaaa
    30841 accgtcaacg gcctcgaacc agtgcagcaa ggtgaaatca ccgtcgatgg tatcgtggtt
    30901 aatgacaaga aaaccgatct ggcaaagctg cgttcccgcg tcgggatggt gttccagcat
    30961 tttgagttgt tcccccattt gtcgattatt gaaaacctga ctctggcgca ggtgaaagtg
    31021 cttaaacgcg ataaagcgcc cgctcgtgaa aaagcattga aattgctgga gcgcgtggga
    31081 ctttccgcac atgccaataa atttccggcg cagatttccg gcggtcagca gcagcgtgtg
    31141 gcaatcgctc gcgcgttgtg tatggatcct attgcgatgc tgttcgacga accgacatcg
    31201 gcgctggatc cggagatgat caacgaagtg ctggacgtga tggtggaact ggcgaacgaa
    31261 ggaatgacca tgatggtggt gacccacaaa atgggctttg cccgcaaagt ggcgaatcgg
    31321 gtgatcttta tggacgaggg taaaattgtc gaagactcgc cgaaagacgc tttcttcgat
    31381 gatccgaaat cggaccgcgc gaaagacttc ctcgcgaaaa tcctgcatta atcactctgg
    31441 cgcgcatacc caagtgcgcg ccatctcacg ctttatcgtt tcgcccctcg tatctgttac
    31501 atcctggcgt tacccttgtc gcaaagaagc acacaacaag gagcaacaat ggcactgcca
    31561 attctgttag attgcgaccc aggtcatgac gacgctatcg caatagttct cgccctcgcc
    31621 tcaccagagc ttgatgtcaa agcaattacg tcttccgccg gaaaccagac accagaaaaa
    31681 accttacgca atgttctgcg tatgctgacc ttgcttaatc gcaccgatat tccggtagca
    31741 ggcggcgcgg taaaaccgtt aatgcgtgag ttgattatcg cggacaatgt gcacggcgaa
    31801 agcggtctgg atggcccggc attaccggaa ccgacgttcg caccgcaaaa ctgtacggcg
    31861 gtagagctga tggcgaaaac gctgcgcgaa agtgcggaac ctgtcacgat tgtgtctacc
    31921 ggaccgcaaa ctaacgttgc cttgctgctc aatagccatc cggaactgca tagcaaaatt
    31981 gcccgtatcg tgattatggg cggcgcaatg gggcttggta actggacgcc tgcggctgaa
    32041 tttaatattt acgttgaccc ggaagcggca gaaattgtct tccagtcagg gatcccagtg
    32101 gtgatggccg gtctggatgt tactcataaa gcgcaaatcc acattgaaga caccgagcgt
    32161 ttccgcgcga ttggcaaccc tgtttcaacc attgttgccg aactgctgga tttcttcctc
    32221 gaatatcata aagacgaaaa atggggcttt gtcggtgcac cgctgcatga cccatgcacc
    32281 atcgcctggc tgttgaaacc cgagttgttt accactgttg agcgctgggt tggcgtggaa
    32341 acacagggga aatataccca gggtatgacg gttgttgatt attattatct gactggcaat
    32401 aaaccgaatg ccactgtaat ggtcgatgtt gatcgtcagg gctttgttga tttactggct
    32461 gatcgtctga aattttacgc ttaacacacg tcattgatta agatcaccac gcgttacctg
    32521 ggtggtctta atctgtttat ctctttttct ttcaagatat aaatgcaatg gataatgcag
    32581 aactcaccat tggtatcgat ctcggcacta ccaatagttt aattgccgtc tggaaagacg
    32641 gtgccgcgca attaattcca aataagttcg gtgaatattt aacaccatcc ataattagca
    32701 tggatgaaaa taatcatatt ttagtcggaa aaccggctgt atcacggcgt acttcgcatc
    32761 cggataaaac agcagcgtta tttaaacgcg caatgggcag taataccaac tggcggttag
    32821 gcagcgacac atttaacgcg ccagaactgt cctctttggt attacgctca ttaaaagaag
    32881 atgccgaaga atttctgcaa cgtccgatta aagatgtggt gatctccgtt ccggcttatt
    32941 tcagcgatga acaacgcaag catacccgtt tagctgcgga gttagccggg ttaaatgcgg
    33001 tacgcttaat taatgaaccc acagcagctg cgatggcata tggcctgcat acgcaacaaa
    33061 atacccgctc gctggttttt gatctcggtg gcggcacgtt tgacgttacg gtgcttgagt
    33121 acgccacgcc ggtgattgaa gttcacgcct ccgctggcga tagcttcctc ggtggcgaag
    33181 attttaccca tatgctggtc gatgaggttt taaaacgcgc ggaagttgcc aggaccacgc
    33241 ttaacgagag tgaactggca gccttgtacg tctgtgtgga agcggcaaaa tgtagcaatc
    33301 aatcgccatt gcacattcgc tggcagtatc aggaagaaac gcgggaatgc gaattttacg
    33361 agaacgaact ggaagatttg tggttgccgc tgctcaatcg cttgcgagtg ccgattgaac
    33421 aggcgttgcg cgatgcgcgt ctgaagccga gtcaaatcga cagtctggta ctggttggcg
    33481 gcgcgtcaca aatgccgctg gtgcagcgaa tcgccgtgcg tctgtttggc aaattaccgt
    33541 atcaaagtta cgatccgagc accattgtcg cgctgggcgc agcaatccag gccgcctgcc
    33601 gcttacgcag tgaagatatt gaagaggtaa tcctcactga tatttgccct tactcgttgg
    33661 gcgttgaagt taaccgccag ggcgtttccg gcattttctc gccgattatt gaacgaaaca
    33721 ccacagtacc ggtgtcgcgt gtagaaactt actcgaccat gcacccggag caggattcaa
    33781 ttacggttaa cgtctatcag ggagaaaacc acaaagttaa aaataacatt ctggttgaat
    33841 ccttcgatgt gccgttgaag aaaaccgggg cttatcagtc gattgatatt cgctttagtt
    33901 atgatatcaa cgggttgctt gaagttgacg tgcttctgga agacggcagc gttaagtcca
    33961 gagtgattaa ccacagcccg gtaacattga gcgcgcagca gattgaagag agtcggacgc
    34021 ggttatccgc attgaaaatt tatccgcgcg atatgctcat caatcgcacc tttaaagcca
    34081 aactggaaga gttgtgggcg cgagcgctgg gtgacgagcg agaagagatt ggccgggtga
    34141 tcaccgattt tgatgcggcg ctacagtcaa acgacatggc ccgcgtggat gaagttcggc
    34201 ggcgggcgag cgattattta gccattgaga tcccataaac acggctgccg gatgcggcgt
    34261 aaacgctgca tccggcatcg gcgcaaaaaa cacatcgtca actaaacaac atcgcgattt
    34321 tgccgagagc ataacctatc accagcaccg ttaaactgat tttgataatg ctggtaatgc
    34381 tctgtggttt ttcatcctca tcattttttt cttcatggtt ttcaggtgtt ggctcatcga
    34441 catcttcatc ctccggctcg agtttcactt tcgtcaacag catccgggtg ataatggcct
    34501 ctaatggatg agcatctccg ccttccagcc ttgtattaag acgggccagc atctcttgtt
    34561 tcggaaacgc ttcaagcact acctgttccg ctacccgata caaatccagt aacggtgaat
    34621 cttgctctgt ctcgctaccg actctcgatt tccaccacgc ccatgctttg cgtttgaaga
    34681 ataacgactc aataaacgat tgacctaacg gcgataattt tccgctatgt aaaatctccg
    34741 cccataacag ccgcgtccgg gcgctctcac caggaacata tttcaatggt ttactttgcg
    34801 catctaccat gctctgcgct tcgataacca tcactaataa cgcgaaataa tctgggcaat
    34861 gacgcttact ccactgcaac aacaaattat cagcttgtgt agatgggtaa ctttcccggt
    34921 acgcgcagag atcggcaagc aggctttccc cctcgccgca gtacaacctt tgagcacaca
    34981 agtaatatcg ggcatcttcg ctttctggtt cttccatttg ccactgtttg gctacaggaa
    35041 tgagttccgc catacctgtt tgcaccgagc tgtaccagcg caacagtttg cgatgtaact
    35101 ttgcatcatc aggaatgaac cacggacctt ccatcgccaa aaacgcagtg acatagtcag
    35161 gatggtaacg gcagcaacgt tccagcgcga agtaatactc aacagtctgg ttctgcaacg
    35221 caacgggata ttccagaagg ctaaggaaat cgaaacaatc accagcctga atggcctcaa
    35281 gaaaagcctc cctttcttcc tcatccattc cttcgctgtc attaaacgaa tgccagttca
    35341 aacgctctgc cagcaaagaa gcacaattca atgaaagata tcgcgcttct atagcgattg
    35401 cacacagcgg ccagcgtaat tgatcgacat cctccatgtt ccaggtattt aattgctgaa
    35461 taaatttctg ccaggcggag ggctgaaaac gatcactttc tgaatccagt aatgtcctga
    35521 atgcacgcag tatttcatgt tcagcggcgg catctttttc ttcatcatct gcttcctcga
    35581 caggatttac cgccagtcgc agcgcctctt cataggcctg gcgtaatgct ttaaacccct
    35641 gcggatcggt ttcgggatga cataacggta agcgagcaag ataagcctgg cggataatgt
    35701 ctatttgcgt cgtgctttca atttcgagga tttgccaaca tgttttcata ggtcgctcac
    35761 atccttaagc gttaccgggc attcaggctg gacagttaat ggttgccagg gaagcgtggc
    35821 atagaaacga tcgcttcccg ctgccagctc ttcgaacatc cgactcccgg cgctatcgta
    35881 tttgtacagg gttagcgcct cgcgtagcga agtgttgtct tcgcactgag aagattgcca
    35941 gtagagacgc cctaacgaat aggcagaaaa atagtgcatc cagccgtgat agtaatggtg
    36001 agctcgtaca tagacgcgcg attgcagcca taaactctct tcttccgtca gccacttgtt
    36061 gagcacaccg acccgtgaca gaaaccccat tcgaacataa tcccaagctt tgattcaccc
    36121 ttccccacag cacatagcgg tttgggcaac gaattgggta taaatcaacc ctctctccga
    36181 gccaccagca attaatgctt tccactcttc aggggaagag cgatgccatg tcagatataa
    36241 gccagctaaa tcattggcat gaccatcatc agtcatctga taaatagtct gaattaaatc
    36301 atcacgatta tttattcccc aggatgatga gagatcgaat tcttttatac cggtatacat
    36361 ttttggcgag tcatgcgcgg gtttgcaacc ctgattaagt atttccatgg gcgcagaaag
    36421 cgcaaaaaga agatattgtt cttccttatt catttgttaa taatccctta agtgcattaa
    36481 ctgactactt ttttatatta cttgccgggc tttccgcaca ttaacgtcga ctgtcacccg
    36541 aacagatgga gtattttccc tatcaaaccg gcaaagataa aaatgtagaa aataattttg
    36601 atgacgccca gacagcccgg cccaccatcg tcaacgggca ttggctgcgg ttgcggctcc
    36661 ggttcaacag tttgcttctc ggtaaaattc gccgcctgaa ttaataatcg acgaataatt
    36721 aatgcttcca gtggacaacg atcttctgca tcaagacggc ttacgatcgg cattaatgat
    36781 tcttctgtcg gttggctggc ctgcactaat tgtttggcaa ctaaatataa tggccataag
    36841 agatgttctg tatcacgcgt gagtgagatc cgcggcttac gtcctttgtg caaaaccatc
    36901 tcgaccagtg aacgccccag cgcagagagt ttttcatcgc tgagtatttc gtataaatga
    36961 aaacgcgtac gggcgctgtc gccggggaca taaagtagct gtttaccctg atcgttaacc
    37021 agttcacgag cttcaatcat catcaccact aacgggtaat aatcgacccg atgctgacgg
    37081 caccattgca atattaaagc atccgcctgg gtggagggat actcgcgcca gtagtcacaa
    37141 agttctgcca gcaagctttc gccttctcca caatagacgc gttgcgcgta ttcataataa
    37201 cgcgcatctt cattatcagg ttcagcttcc cgccacgacc gggcgtaatc cagaagttcg
    37261 gggatatcca ggcgacctgc gctataccag cggagtaaat ttctgtgcag ttttgcatca
    37321 tcggggatga tcactgcgcg atgttgcgct aaatacaatg tcagccattc tggatgcgat
    37381 gaccaaatcc gagcgaacat ttggtaaaaa tcgatggtgt cattttgcac ggcaacgggc
    37441 agatgcagaa tggtctggaa gttaaaaaca ttccccttcg caatggcata taaaaaggat
    37501 tccagttctt cttcgtctat ttccccgacg ttttcctcct gcaaccaccg caatctttct
    37561 gctaataaca ccacgcactc gaaggataaa tgagcagtgt tcatggcgat tgtgcacagc
    37621 gaccagcgta attcatcaat ctcttccatc gagcaataat ttaattgctg aatgaatcgc
    37681 tgccaggcgg agggcagaaa acgttcgcta tcagaggcaa gtaacgcgcg aaaggcgagc
    37741 agaatttcat gttctgctac ctcatattct tctggttgcc aaacagattt agcaggcgac
    37801 tgcgcaatcc gtagcgcctc ctcatacgcc tgacgaagtt gtttaaaacc ctgcggatcg
    37861 gtttctggat gaaaggacgg taacagcgcc agataagcgc ggcggataat atcgacgtca
    37921 gtcgtttcct ctatatcgag gatcttccag caatttttca taagtcgctc atatccttaa
    37981 gcgtttccgg gcatgtgggg tagtcagcca gtggttgcca agacaaggta gggtaatacg
    38041 catcatcact ggcaaataat tgataaaaca tatcattgc
//
LOCUS       DAJVUN010000012        37975 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.012, whole genome shotgun sequence.
ACCESSION   DAJVUN010000012 DAJVUN010000000
VERSION     DAJVUN010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37975
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.012"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..312
                     /locus_tag="OQQ76_000492"
     CDS             <1..312
                     /locus_tag="OQQ76_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HCS1967089.1"
                     /translation="QAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVGGGAVAAAAGSM
                     VNDKTLVEGVSLTYKEGTKVYTSTQVGKECQFTTGLAVVITTTYNETRIQPNTKCPEK
                     S"
     gene            328..867
                     /locus_tag="OQQ76_000493"
     CDS             328..867
                     /locus_tag="OQQ76_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5384 family protein"
                     /protein_id="HCS1967090.1"
                     /translation="MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQH
                     DEWVAERNREIQQEKQRRSNAQVAANKRAATAAANKKARQDKLDAEASADKKRDQSYE
                     DELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDLVQSEADANRNMTEGGR
                     DLMKSVGKAEENKSDSWFN"
     gene            complement(962..2539)
                     /gene="guaA"
                     /locus_tag="OQQ76_000494"
     CDS             complement(962..2539)
                     /gene="guaA"
                     /locus_tag="OQQ76_000494"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HCS1967091.1"
                     /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA
                     QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEA
                     SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVAST
                     ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMHMLERFVRDICQCEALWTPAKIIDDAV
                     ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM
                     FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ
                     GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG
                     LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYNKVSQAFTV
                     FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS
                     RVVYDISGKPPATIEWE"
     gene            complement(2608..4074)
                     /gene="guaB"
                     /locus_tag="OQQ76_000495"
     CDS             complement(2608..4074)
                     /gene="guaB"
                     /locus_tag="OQQ76_000495"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004151980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HCS1967092.1"
                     /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP
                     TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV
                     TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL
                     RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG
                     NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP
                     VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI
                     DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS"
     gene            4236..5606
                     /gene="xseA"
                     /locus_tag="OQQ76_000496"
     CDS             4236..5606
                     /gene="xseA"
                     /locus_tag="OQQ76_000496"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HCS1967093.1"
                     /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS
                     GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM
                     QPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL
                     KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND
                     ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS
                     TRQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL
                     KRTGQQQQRLTQRLNQQNPQPKIHRAQTRIQQLEYRLAETLRVQLSATRERFGNAVTH
                     LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK
                     SRKKVH"
     gene            complement(5603..5818)
                     /locus_tag="OQQ76_000497"
     CDS             complement(5603..5818)
                     /locus_tag="OQQ76_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417005.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HCS1967094.1"
                     /translation="MELHCPQCQHVLDQDNGHARCPSCGEIIEMKALCPDCHQPLQVL
                     KACGAVDYFCQHGHGLISKKRVEFVLA"
     gene            complement(5887..7359)
                     /gene="der"
                     /locus_tag="OQQ76_000498"
     CDS             complement(5887..7359)
                     /gene="der"
                     /locus_tag="OQQ76_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417006.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HCS1967095.1"
                     /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR
                     AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI
                     AKHLRSREKPTFLVANKIDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL
                     PWMEDLAPQEEVDEDAEYWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL
                     TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI
                     KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV
                     KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV
                     EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG
                     SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK"
     gene            complement(7477..8655)
                     /gene="bamB"
                     /locus_tag="OQQ76_000499"
     CDS             complement(7477..8655)
                     /gene="bamB"
                     /locus_tag="OQQ76_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HCS1967096.1"
                     /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP
                     TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG
                     WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG
                     LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSA
                     VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ
                     IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYD
                     GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR
                     "
     gene            complement(8666..9286)
                     /gene="yfgM"
                     /locus_tag="OQQ76_000500"
     CDS             complement(8666..9286)
                     /gene="yfgM"
                     /locus_tag="OQQ76_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ancillary SecYEG translocon subunit YfgM"
                     /protein_id="HCS1967097.1"
                     /translation="MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNS
                     HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN
                     ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV
                     ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI"
     gene            complement(9304..10578)
                     /gene="hisS"
                     /locus_tag="OQQ76_000501"
     CDS             complement(9304..10578)
                     /gene="hisS"
                     /locus_tag="OQQ76_000501"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HCS1967098.1"
                     /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP
                     IVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE
                     QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH
                     VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL
                     LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL
                     GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLV
                     ASGADTQSAAMALAERLRDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV
                     TNGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG"
     gene            complement(10689..11807)
                     /gene="ispG"
                     /locus_tag="OQQ76_000502"
                     /gene_synonym="gcpE"
     CDS             complement(10689..11807)
                     /gene="ispG"
                     /locus_tag="OQQ76_000502"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HCS1967099.1"
                     /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT
                     VNQIKALERVGADIVRVSVPTMDEAEAFKLIKQRVNVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES
                     AMRHVDHLDRLNFAQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV
                     KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV
                     RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVEK"
     gene            complement(11834..12847)
                     /gene="rodZ"
                     /locus_tag="OQQ76_000503"
     CDS             complement(11834..12847)
                     /gene="rodZ"
                     /locus_tag="OQQ76_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoskeleton protein RodZ"
                     /protein_id="HCS1967100.1"
                     /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV
                     RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSL
                     GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
                     GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV
                     DTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLF
                     SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS
                     PAQ"
     gene            complement(13132..14286)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ76_000504"
     CDS             complement(13132..14286)
                     /gene="trmG/rlmN"
                     /locus_tag="OQQ76_000504"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HCS1967101.1"
                     /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQ
                     VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ
                     RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG
                     AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA
                     LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT
                     IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVL
                     MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV"
     gene            complement(14436..14867)
                     /gene="ndk"
                     /locus_tag="OQQ76_000505"
     CDS             complement(14436..14867)
                     /gene="ndk"
                     /locus_tag="OQQ76_000505"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HCS1967102.1"
                     /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV
                     EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT
                     LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR"
     gene            complement(15016..17328)
                     /gene="pbpC"
                     /locus_tag="OQQ76_000506"
     CDS             complement(15016..17328)
                     /gene="pbpC"
                     /locus_tag="OQQ76_000506"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417014.1"
                     /note="penicillin-binding protein 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase PbpC"
                     /protein_id="HCS1967103.1"
                     /translation="MLRLLTKRGCWITLAAVPFLLFLAAWGADKLWPLPLHEVNPARV
                     VVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARA
                     AWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGGKILQLWRALQLEWHLSKREILILY
                     LNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRVRPDRWPERAEAA
                     RNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKIVTTL
                     DAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMV
                     NAIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEA
                     LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAA
                     AYTAFARHGKAGKLRLQPDDPLLERPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPL
                     AWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNILLS
                     RSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEG
                     INGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCP
                     PYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRN
                     VTLHLTDKGDYQLLVMDDVGQIATVKFVMQ"
     gene            complement(17329..22290)
                     /gene="yfhM"
                     /locus_tag="OQQ76_000507"
     CDS             complement(17329..22290)
                     /gene="yfhM"
                     /locus_tag="OQQ76_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha2-macroglobulin"
                     /protein_id="HCS1967104.1"
                     /translation="MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSEN
                     ASSAKLSVPERQKLAQQSAGKVLTLLALSEVQLDGAATLVLTFSIPLDPDQDFSRVIH
                     VVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTIT
                     TRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRN
                     SLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAG
                     RYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQA
                     TSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFG
                     PRDLYRPGETVILNGLLRDADGKALPDHPIKLDVIKPDGQVLRSVVSQPENGLYHFTW
                     PLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPNDEVKFSV
                     VGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDK
                     GRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPADALPGLRPQFALK
                     SVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSE
                     DEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAG
                     YSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWW
                     QEIDVPAQGLDLTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGVLHLPLGDEN
                     RRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDP
                     WQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPPVNHVNIVAQQA
                     LPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRF
                     MASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVR
                     ALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAI
                     PADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAA
                     QLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLV
                     RAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQ
                     KAPLGALREIWEHRADAASGLPLLQLGIALKTMGDATRGEEAIVLALKTPRNSDERIW
                     LGDYGSPLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERCLSTQESNALFLAAR
                     TIQDLPGKWQAQTSFSAEPLTGEKTLNSNLNSDQLATLQVRNSGDQPLWLRMDASGYP
                     QSAPLPANNMLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLP
                     AGLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPV
                     TLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP"
     gene            22497..23342
                     /gene="sseA"
                     /locus_tag="OQQ76_000508"
     CDS             22497..23342
                     /gene="sseA"
                     /locus_tag="OQQ76_000508"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HCS1967105.1"
                     /translation="MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLN
                     GHIPGAVFFDIKALSDHTSPLPHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAP
                     RAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDV
                     LLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE
                     LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLP
                     VEPVK"
     gene            complement(23835..24611)
                     /gene="sseB"
                     /locus_tag="OQQ76_000509"
     CDS             complement(23835..24611)
                     /gene="sseB"
                     /locus_tag="OQQ76_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708361.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced serine sensitivity protein SseB"
                     /protein_id="HCS1967106.1"
                     /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE
                     AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL
                     FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT
                     LFKTIKPVKRAFICSIKENEEAQPNLFIGIEADGDIEEIIQATGSVATDTLPGDEPID
                     ICQVKKGEKGISHFITEHIVPFYERRWGGFLRDFKQNRII"
     gene            complement(24753..26036)
                     /gene="pepB"
                     /locus_tag="OQQ76_000510"
     CDS             complement(24753..26036)
                     /gene="pepB"
                     /locus_tag="OQQ76_000510"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HCS1967107.1"
                     /translation="MTEAMKITLSTQLADARWGEKATYSINNDGITLHLNGADDLGLI
                     QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVEWPDLDDAQRQELDN
                     RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL
                     HTVGRASERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD
                     MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT
                     DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS
                     ASQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW
                     LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA"
     gene            complement(26214..26414)
                     /gene="iscX"
                     /locus_tag="OQQ76_000511"
     CDS             complement(26214..26414)
                     /gene="iscX"
                     /locus_tag="OQQ76_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004104502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HCS1967108.1"
                     /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD
                     DPQASNEKILEAILLVWLDEAE"
     gene            complement(26426..26761)
                     /gene="fdx"
                     /locus_tag="OQQ76_000512"
     CDS             complement(26426..26761)
                     /gene="fdx"
                     /locus_tag="OQQ76_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015683702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HCS1967109.1"
                     /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK
                     SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR
                     YTINHAREH"
     gene            complement(26763..28613)
                     /gene="hscA"
                     /locus_tag="OQQ76_000513"
     CDS             complement(26763..28613)
                     /gene="hscA"
                     /locus_tag="OQQ76_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001559634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HCS1967110.1"
                     /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL
                     ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH
                     LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF
                     DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL
                     RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQADIPDRSDNRVQRELLDAAIAAKI
                     ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM
                     VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI
                     PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS
                     LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE
                     IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDNAA
                     AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV"
     gene            complement(28630..29145)
                     /gene="hscB"
                     /locus_tag="OQQ76_000514"
     CDS             complement(28630..29145)
                     /gene="hscB"
                     /locus_tag="OQQ76_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone HscB"
                     /protein_id="HCS1967111.1"
                     /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ
                     LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL
                     DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSS
                     AEQLEEKLLDF"
     gene            complement(29241..29564)
                     /gene="iscA"
                     /locus_tag="OQQ76_000515"
     CDS             complement(29241..29564)
                     /gene="iscA"
                     /locus_tag="OQQ76_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HCS1967112.1"
                     /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF
                     VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG
                     ESFHV"
     gene            complement(29581..29967)
                     /gene="iscU"
                     /locus_tag="OQQ76_000516"
     CDS             complement(29581..29967)
                     /gene="iscU"
                     /locus_tag="OQQ76_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HCS1967113.1"
                     /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ
                     IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPV
                     KIHCSILAEDAIKAAIADYKSKREAK"
     gene            complement(29995..31209)
                     /gene="iscS"
                     /locus_tag="OQQ76_000517"
     CDS             complement(29995..31209)
                     /gene="iscS"
                     /locus_tag="OQQ76_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HCS1967114.1"
                     /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG
                     WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT
                     EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV
                     QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV
                     RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR
                     LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE
                     PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ
                     GVDLNSIEWAHH"
     gene            complement(31321..31809)
                     /gene="iscR"
                     /locus_tag="OQQ76_000518"
     CDS             complement(31321..31809)
                     /gene="iscR"
                     /locus_tag="OQQ76_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HCS1967115.1"
                     /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ
                     LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD
                     KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL
                     RA"
     gene            complement(32079..32819)
                     /gene="trmJ"
                     /locus_tag="OQQ76_000519"
     CDS             complement(32079..32819)
                     /gene="trmJ"
                     /locus_tag="OQQ76_000519"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HCS1967116.1"
                     /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS
                     QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA
                     EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW
                     LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR
                     ARPESQELNILRGILASIEQQNKGNKAE"
     gene            32938..33741
                     /gene="suhB"
                     /locus_tag="OQQ76_000520"
     CDS             32938..33741
                     /gene="suhB"
                     /locus_tag="OQQ76_000520"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HCS1967117.1"
                     /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD
                     KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS
                     IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK
                     AKQYATAYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL
                     LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAMLANMRDELSDALKR"
     gene            33886..34740
                     /locus_tag="OQQ76_000521"
     CDS             33886..34740
                     /locus_tag="OQQ76_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311427.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1967118.1"
                     /translation="MALPVNKRVLKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP
                     DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLP
                     ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGA
                     NILAVIGQDDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP
                     LLLIHGKADHVIPWQHSEKLYSLAKETKRLILIPDGEHIDAFSDRHGDVYREQMVDFI
                     LSALNPQN"
     gene            34931..36211
                     /gene="csiE"
                     /locus_tag="OQQ76_000522"
     CDS             34931..36211
                     /gene="csiE"
                     /locus_tag="OQQ76_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase inducible protein CsiE"
                     /protein_id="HCS1967119.1"
                     /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD
                     DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI
                     TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFETRDIHFLCLYLQYCL
                     LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSML
                     RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLF
                     AIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN
                     DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP
                     YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA"
     gene            complement(36203..37342)
                     /locus_tag="OQQ76_000523"
     CDS             complement(36203..37342)
                     /locus_tag="OQQ76_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HCS1967120.1"
                     /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL
                     LGAGLVARFLGSLLIAPRVSDPSRLISALRVLAMMTLLFAVAFWAGAHVAWLMLVMIG
                     FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYQVIL
                     ALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVLQNWRFLACVCLLQGAH
                     AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC
                     GVVRWGIMGATTALPWLIVVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA
                     MGGSIAIMTVFTGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC"
     gene            complement(37502..37969)
                     /locus_tag="OQQ76_000524"
                     /pseudo
     CDS             complement(37502..37969)
                     /locus_tag="OQQ76_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311430.1"
                     /note="activator of 3-phenylpropionic acid catabolism;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
BASE COUNT         8982 a        10548 c         9458 g         8987 t
ORIGIN      
        1 caagccttcg gcgcgcttat tggcgcagtc gctggcggtg ttatcggcca caacgtcggt
       61 tctggcagca attccggaac gacggcaggg gcagttggcg gcggagctgt agccgcggca
      121 gcgggttcta tggtgaatga taaaacctta gtggaaggtg tttctttaac atataaggaa
      181 ggcaccaaag tgtatacctc tacacaggtg ggtaaagagt gccagtttac gacaggttta
      241 gccgttgtta ttaccacaac gtataacgaa acgcgtattc agccaaatac taaatgtcct
      301 gaaaagagct aataatcagg aggagtcatg aagaaagttt ttctttgcgc catcttggcc
      361 tccttaagct atccggctat cgcctcatca ttgcaggatc aactctctgc tgtagcagaa
      421 gcggaacagc aaggtaaaaa tgaagagcaa aggcagcatg acgaatgggt cgcggagcgc
      481 aacagggaaa tccagcaaga gaagcaacgt cgctcaaatg cccaggtcgc cgctaacaaa
      541 agagcggcaa cggcagcagc aaataagaaa gctcgtcagg ataaactgga cgccgaagcc
      601 tctgcggaca aaaaacgcga tcaaagttat gaagatgagc tacgcagctt agagattcag
      661 aaacaaaaac tggcgctggc aaaagaagaa gcccgcgtta agcgagaaaa cgaatttatc
      721 gatcaggaac tgaagcacaa agctgcgcaa accgatttgg tgcaatctga agctgacgcc
      781 aacagaaata tgactgaagg cggtcgcgat ctgatgaaaa gcgtgggcaa agcagaagag
      841 aacaaatcgg acagctggtt taattaatcg atgttagtaa cttcaagcct atgattcttg
      901 aagataaaaa accctctgta gtaacagagg gttttgttca ttcatagtgc agggattaaa
      961 atcattccca ctcaatggta gctggcggct tgccgctgat gtcatacacc acgcgggaaa
     1021 taccgttcac ttcattgata atgcggttgg aaacgcgacc gaggaaatcg tacggcagat
     1081 gcgcccagtg tgcggtcata aagtcgatgg tttcgacagc acgcagagag acaacccagt
     1141 catacttacg accatcgccc attacgccaa cggaacgtac cggcaggaac acagtgaacg
     1201 cctggctgac tttgttgtac aggtccgctt tacgcagttc ttcaatgaag atggcgtcag
     1261 cacggcgcag caggtcacag tactctttct tcacttcacc cagcacacga acgccaaggc
     1321 ctggtcccgg gaacgggtga cggtacagca tgtcgtacgg caggcccagc tccagaccaa
     1381 tcttacgcac ttcgtctttg aacagctctt tcagcggttc aaccaggccc atcttcatct
     1441 ctttcggcag gccgcccacg ttgtggtgag atttgatgac gtgtgcttta ccggttgcag
     1501 aagccgcaga ttcgataacg tcagggtaga tggtgccctg cgccagccac ttcacgtctt
     1561 ccagtttcag cgcttcttca tcgaacactt caacgaaaac gcgcccgatg attttacgtt
     1621 ttgcttccgg atcgttttcg ccagccagcg ctgacaggaa gcgatcttct gccggtacgt
     1681 gaacaatgtt cagaccaaag tgatcgccaa acatatccag aacctgctct gcttcgttga
     1741 gacgcagcag gccgttgtcg acgaatacgc aagtcaggtt tttaccgata gcgcggtgca
     1801 gcagcattgc ggttacggag gaatccacac caccagagag gccgaggatg actttatcgt
     1861 cgcctacctg ctcgcggatg cgagctacag catcgtcgat aattttcgct ggcgtccaca
     1921 gggcttcaca ctggcagata tcacgcacaa aacgctccag catgtgcata ccctggcggg
     1981 tgtgagtcac ttccgggtgg aactgtacgc catagaagcg tttttcttcg ttagccataa
     2041 tggcaaacgg gcagctttcg gtgctggcta cggtgacgaa gtcggacggg atagcggtaa
     2101 ctttatcgcc gtggctcatc cagacatcga gcagcggttt accgtctgcg gtcagcgcat
     2161 cttcgatacc gcgaaccagt gcgctgtcgt ttacgacttc aacctgcgcg tagccaaatt
     2221 cacgttcgtt agaggcttca acgtgaccgc ccaactgcat tgccatggtc tgcatgccat
     2281 agcaaacgcc gaataccggt acgcctgctt caaagacata ctgcggcgca cgcggactgt
     2341 tttcttcagt agtactttcc gggccgccgg aaagaataat gccgcttgga ttgaagtcac
     2401 gaatttgtgc ttctgtcaca tcccacgccc acagttcgca gtaaacaccc agctcacgca
     2461 cgcggcgcgc aaccagttga gtgtactgag aaccgaagtc cagaatgagg atgcgatgct
     2521 tatgaatgtt ttccgtcatt gacgcttatt ccgaggcaag tgaaacagat aatataaatc
     2581 gcccgacatg aagtcgggcg aagagaatca ggagcccaga cggtagttcg gggactcttt
     2641 agtaatggtc acgtcgtgaa cgtggctttc ctgaatgccc gcaccgctga tacgtacaaa
     2701 ctccgcttta gtacgcagtt cgtcgatagt accacagccg gtcaggccca tacaggagcg
     2761 caggccgccc atctgctggt gaatgatctc tttcaggcga cctttatagg ctacgcgacc
     2821 ttcgatacct tccggcacca gtttgtcggc agcgttgtca ctctggaagt aacggtcaga
     2881 agaacctttg gacatcgcac ccagagagcc cataccacgg taagatttgt aagaacggcc
     2941 ctggtagagt tcaatttcac ccggagattc ttcagtaccc gccagcatgg aacccaccat
     3001 taccgcgctt gcgccagcgg cgatagcttt ggcgatgtcg ccggagaagc gaataccacc
     3061 atctgcgata accggaatac ctgtgccttc cagcgcttca actgcgtcag caacggcagt
     3121 gatctgcgga acacctacgc cagtaacgat acgagtcgta cagatagaac cagggccgat
     3181 accgacttta accgcgctgc aaccagcttc tgccaaagcg cgtgcacctg cagctgttgc
     3241 cacgttgccg ccgatgattt gcagatccgg atatttagca cgggtttcac ggatacgctg
     3301 caaaacgcct tctgagtggc cgtgggagga gtcgatcagc agaacgtcaa cgccagcggc
     3361 aaccagcgcg tcaacacgct cttcgttacc cgcacctgcg ccaactgcag caccaacacg
     3421 cagacggcct tgctcgtctt tacaggcgtt cggtttacgt tccgctttct ggaagtcttt
     3481 cacggtgatc atgccgatca ggtggaattc gtcatcaacc accagcgctt tttcaacgcg
     3541 tttttcgtgc atttttgcca gcaccacttc acgggcttca ccttcacgca cggtgaccag
     3601 acgctctttc ggcgtcatgt aaacgctaac cggctggttc aggtcggtaa caaaacgcac
     3661 gtcacgaccg gtgataatac ccaccagttc gttttcttcg gtaacaaccg gatagcccgc
     3721 aaaaccgtta cgctcggtca gttctttcac ttcgcgcagc gtcgtggttg gcagaacagt
     3781 ctgcggatca gtcaccacac cagattcgtg ttttttcaca cggcgaactt cttctgcctg
     3841 gcgttcaatg gacatgtttt tgtggataaa gccgataccg ccttcctgag ccagagcaat
     3901 agccaggcgc gcttccgtta cggtatccat tgctgcggaa agcataggga tattcagacg
     3961 aatagttttc gtcagctggg tgctgaggtc agcagtattc ggcagaacgg tagaatgagc
     4021 aggaacgagg agaacgtcgt caaacgtcag agcttcttta gcgatacgta gcatgggcaa
     4081 tatctcgacc agagtggtta ataaatattg ccgcggcatt atacagagcg taaccgattg
     4141 catctacccc tttttgcaaa aaatgcttgc tatccccgaa gggcgggtta ctatcgactg
     4201 aataacctgc tgatttagaa tttgatctcg ctcacatgtt accttctcaa tcccctgcaa
     4261 tttttaccgt tagtcgcctg aatcaaacgg ttcgtctgct gcttgagcat gagatgggac
     4321 aggtttggat cagcggcgaa atctctaatt tcacacaacc ggcttccggt cactggtact
     4381 ttacactcaa agacgacacc gcccaggtac gctgcgcgat gttccgcaac agcaaccgcc
     4441 gggtgacctt ccgtccacag catggacaac aagttttagt tcgcgccaat attacgctct
     4501 acgagccgcg cggtgactac cagataatcg ttgagagtat gcagccggcc ggtgaagggc
     4561 tgctgcaaca gaagtacgaa cagctcaaag cgaagttgca ggctgaaggt ttgttcgatc
     4621 agcaatacaa aaaaccactt ccctcccctg cgcattgcgt tggtgtgatc acctcaaaaa
     4681 ccggtgctgc gctacatgat attttgcatg tgttaaaacg tcgcgatcct tctctaccgg
     4741 tgatcatcta ccccaccgcc gttcagggcg atgacgcacc ggggcaaatt gttcgcgcca
     4801 ttgaactggc gaatcagcgc aatgagtgcg acgtgttgat cgttgggcgc ggcggcggtt
     4861 cgctggaaga tttatggagt tttaacgacg aacgcgtagc gcgggcgatt tttgccagcc
     4921 gcattccggt cgtcagcgcc gtcgggcatg agacggatgt gaccattgcc gattttgttg
     4981 ccgatctgcg tgcgccaacg ccgtctgccg ccgctgaagt agtgagccgt aatcagcaag
     5041 agttactgcg ccaggtgcaa tcgacccgtc aacggctgga gatggcgatg gattattatc
     5101 tcgccaaccg cacgcgtcgc tttacgcaga tccatcaccg attacagcaa cagcatccgc
     5161 agctccggct ggcacgccag caaaccatgc ttgagcgcct gcaaaagcgg atgagctttg
     5221 cgctggaaaa tcaacttaag cgtaccgggc aacagcagca gcggttaaca cagcggctga
     5281 atcagcaaaa tccacagccg aagattcatc gcgcgcaaac gcgcattcag caactggaat
     5341 atcgtttagc agaaaccctg cgcgtacagc ttagcgccac gcgtgaacgt ttcggtaatg
     5401 cagtaacgca cctcgaagcc gtaagcccac tgtcaacgct ggcgcgtgga tacagcgtta
     5461 ctactgctac tgacggcaat gtactgaaaa aagtgaagca agttaaagcg ggtgaaatgc
     5521 taaccacacg tctggaagac ggctggatag aaagtgaagt taaaaacatc cagccagtaa
     5581 aaaaatcgcg taaaaaggtg cattaagcca gcacgaattc aacgcgtttt ttcgatatca
     5641 agccatgccc gtgctgacag aagtaatcta ctgcaccgca ggcttttaac acctgcaacg
     5701 gttgatggca gtctggacaa agagctttca tttcaataat ttccccgcag gatgggcaac
     5761 gcgcatggcc gttatcctga tcaagcacat gctgacattg tggacaatgc agttccatat
     5821 gaattcctcc ggtagccatc cctctacatt catagaggga atggcagata aaatacttac
     5881 ggataattat ttatttttct tgatgtgctt catcagacgc ttacgtttac gcatctgggt
     5941 tggcgtcagg gtgttacgct tgttcgcata cgggttttcc ccttctttga actgaatacg
     6001 aatcggcgat cccattacgt ccagcgattt gcggaagtag ttcatcaagt agcgcttgta
     6061 ggaatcaggc aggtctttca cctgattacc gtgaatcacc acaatcggcg ggttataacc
     6121 accagcgtgg gcatatttca gcttcacacg acgaccgcgt accagcggcg gttggtgatc
     6181 ttcaacagcc atcgtcatga tgcgcgtcag catagaggtc cccacacgac gggtggagct
     6241 gtcatacgct tcacgtactg attcaaacaa gttaccaaca ccactgccgt gcaaggcaga
     6301 gataaagtgc acacgagcaa aatcgataaa gcccagacgg aagtccagcg tttctttcac
     6361 ctgctctttc acttcctggc tcaggccatc ccacttattc accacaatga caagtgagcg
     6421 cccactattg agaataaagc ccagcagcga gagatcctga tcggaaatac cttcgcgcgc
     6481 atcaatcact aacatcacca cgttggcatc ttcaatggcc tgcaacgttt tgattacgga
     6541 gaatttctct acagcatcgg tgattttgcc gcgtttacgt acgccagcgg tgtcaatgag
     6601 cacatactca cgtccatcgc gttccattgg aatgtagata ctgtcacgcg tcgtgccagg
     6661 catgtcataa acaacaacgc gctcttcacc aagaatacgg ttagtgagtg tagacttacc
     6721 tacgttcgga cgacccacaa tcgccagttt gatcggcaga ctttgcgggt cgaagtcgtc
     6781 ttcctcttct tcttcgccgt tctcttccgc ttcaaattgc gcccagtatt cagcgtcttc
     6841 gtcgacttcc tcttgcggtg cgagatcttc catccacggc agcagcacat gctccagcag
     6901 acttaatacg ccacgaccgt gagacgcggc gatcgggtag atttcaccta agccaagcga
     6961 gtagaaatca accactgcct gatcgggatc cagaccgtca attttgtttg ccaccaggaa
     7021 ggtcggtttt tcacgggagc gcagatgttt ggcaatcgct tcatctgccg gcatcaggcc
     7081 cgcgcgcgca tccaccataa acagtacgac gtccgcttct tcaatcgcca gcagcgactg
     7141 ttccgccatg cgggtttcta caccgtcttc tgtgccatca atcccgccgg tatcaataca
     7201 gataaactca cggccttcaa tttccgcacg accgtactta cggtcacgag tcagacccgg
     7261 gaaatccgca accagcgcat ctcgggtgcg agttagacgg ttaaataacg tggattttcc
     7321 tacgttaggg cgcccgacaa gcgcgaccac aggtaccatg tttaaagcct catttttata
     7381 aatcatcaga caacgcacgc tatattcgcg tcgttgttaa aaacaggaaa acggcccctg
     7441 tccaggagcc gttttcaaag tgaacgacag agacgattaa cgtgtaatag agtacacggt
     7501 tccgtctttt gcctggatca gcagtttgcc gtcagcggca accggttcag tctggaaacc
     7561 ggaactatca actttttgct gggcaacgaa acgaccatct tcgacattaa tccagtgcag
     7621 ataaccttca ctgtcaccga ccaccaggtt gccatcatac agcaccggag aagtcagcag
     7681 gcgatgcaac agatcgcttt gtgtccacag cgtaacgccg ccatcaatgg tcaacgccat
     7741 cacccggtca ttttgatcga ccagatagat gcgattgccg tcgacgatga aatcattcac
     7801 cgaacccagt tcgcgtttcc acataatctg accactgcgc agatcaagcg ccgtcaggtt
     7861 accattatag gccagcgcga aaacaacgcc gttaacaacg acgggagtcg tgtcaacatc
     7921 gctcagacgg tcaatttcgg tagaaccggt cgcctgggaa atacgctgct gccaaatcat
     7981 ctggccctgt tccatcagca ctgcgctgac gcgaccatta tcgcccccca cgacggccgc
     8041 accaaaagcc gttgccggcg cagactcgcc acgcaaagag agcgaaggca tatcgaggtt
     8101 aactgtccat ttgacagcgc cgtcagcttc gttcagcgct tgtaactgac cgttactggt
     8161 gtggattaac accagaccgt cgctgaccac cgggcgcgaa agtgcttcac ccgcgacttt
     8221 agtttgccat gccacagtac catcgctggt attcagcgcg taaacctgcg ccttttcgct
     8281 gccaatgtag acatgcccac cagacacggt cacaccgcca gaaagtaatg caggctcttt
     8341 agagaaccag ccatctttct cggccaggct gacagaccag atttctttgc catcatccgc
     8401 attcagcgct tttaccaaac cagcgcggtc cgctgcatag acaacgttgt ccgccagtgc
     8461 cggatgaaga ttggaataga agttgccaat gccgctacca acagaagtac tccacgccgt
     8521 ggtcggcgta aactggtttt caacggttgg caatggggac atctttacca catcttcttc
     8581 gctgttaaac agcgaacagc cgcttaaaag ggtaacggaa agcagtcctg gcagcagtaa
     8641 tttacgcaat tgcatcgggt ccctctcaga tggacaaatt attaattttc atctgcatca
     8701 tttcgctcag tgccggagta acatcgcttt tcacgcctgc ttcccatgca ctacgcgcac
     8761 cttgcttatc acctttgctc agcaatgctt caccacgcag gtcggcaaca atggcagccc
     8821 acccttcacc tttgatggta tcaagggttt tcagcgcggc atcagcctgc ttgagctgta
     8881 cctgaacgcg agcaagacgc agatttatca cggctttgag attttcatcg ctcgtgtctg
     8941 ccagcccctg ttgtaactgg gcggcagctt tctctagttc atttttgtca acaaattgct
     9001 gcgcaagttc caaagaagcc agcgcaccat aagtattttt attttcagca gcaaattttt
     9061 ccgccgccgg gatgctatcc ggtttgcctt cgctcactgc ggtaaccgca ttttgatagg
     9121 caagagaagc ggagcgtgca gaatcaacct gatggctgtt ccagtagcgc cagccaatca
     9181 gtgcgccaac gcccaaaatc accccaacag ccagtgcttt gccattttca gcaaaaaagc
     9241 gtttaaccgc ttctacctgg tcgttttcgt tctcgtaaat ttccacgctg tccttctcct
     9301 tccttaaccc agtaacgtgc gcaaatgcgc ggctacgcta tcctgcgcaa ctgccgtttg
     9361 ctcaccagag cgcaaatcct tcactactgc tgtgccgtta gtcacttcag actcacccag
     9421 caccacagca acgcgggcac cccatttatc agcacgggca aactgtttct taaagttgcc
     9481 gccgccgtgg ttggtcatca atttcacgcc ctgtaattca tcacgcagac gctcagctaa
     9541 tgccatagcc gcagattgtg tatcagcacc tgaagccacc aggtatatat cgacaatagg
     9601 atcggcttta aattccggat taacggcctg tactaacaat acaagacgtt cgaggcccat
     9661 cgcaaaaccg acagccggtg ttgcacgacc gcccagttgt tccacaagac cgtcataacg
     9721 accgcctgca cacacggtgc cctgggagcc gagactgtta gtcacccact cgaaaacggt
     9781 acggttatag taatccagac cacgcaccag acgctggttt acggtgtaag cgatccccgc
     9841 gctctcaagc agtttgcaca gaccggcaaa atgctcacga gattcctcgt ccagataatc
     9901 acctaatgcc ggagcgtcgt tgagaagcgc ctgcacttcc ggattttttg aatccagcac
     9961 gcgcagcggg ttagtgtaca tgcggcgttt gcagtcttcg tccagctttt ctttatgctg
    10021 ctcaaggaat gccaccagcg catcgcggta attggcgcgt gcttccagcg aaccgataga
    10081 attcagctca agagttacgt gttcggaaat acccagcgcg cgccaccagc gggcggtgag
    10141 cataatcagt tcagcgtcga tatccggacc ttgcagaccg aaaacttcgc agcccaactg
    10201 atggaactga cgataacgcc ctttctgcgg acgctcgtga cggaacatcg gcccgatata
    10261 ccacagacgc tgttcctgat tgtacagaag accatgctcg atgccggcgc gtacacagcc
    10321 cgccgtccct tcagggcgca gagtcaggct gtcgccattg cgatcctcaa aggtgtacat
    10381 ctctttttca accacgtcgg tgacttcacc aatcgcacgt ttgaatagcg gggtctgctc
    10441 tacaatcggc aagcggattt cactgtaacc gtagctgccg agcacgtttt tcagtgtgcc
    10501 ttcaatgcgc tgccagatgg ccgtttcgcc aggcaggtaa tcgttcatgc cgcgaatggc
    10561 ttgaatgttt tttgccacgt ttattctctt tctgaatata aaaatgaacc ctcaacgctt
    10621 ccctcaatgt ttggggagcc atgcgggttc aatcatacac gggaagcgag gcgcttccca
    10681 tcacgttatt atttttcaac ctgctgaacg tcaattcgac gcgcttcatc cagctgactg
    10741 gctttcgcac gaatgcgtgc ttccagctgg tcgatcatat cgttgttgtc cagacggtct
    10801 ttgcgcacgc catcttcata gaggccgctt ttcttgttgc cgccggtgac gccgagtgta
    10861 gaaaccagcg cctcacctgg gccattcacc acgcagccga taatcgaaac gtccatcgga
    10921 gtgatgatat cttccaggcg ttgctccagc gcgttaaccg taccgataac atcaaattcc
    10981 tgacgcgaac aggtcgggca ggcgatgaag ttgatccctc gcgaacggat acgcagcgat
    11041 ttcaaaatat cgaaaccgac tttgatctct tcgaccggat cggccgccag cgatacgcgc
    11101 agcgtgtcgc cgatgccttc agacagcagc agacctaaac caatggcgga ttttactgcc
    11161 ccgctgcgtg caccaccggc ttcggtgatc cccagatgca gcggctgatc gatctgtttt
    11221 gccagcaaac gataagactc aacagcgagg aagacgtcag acgctttcac gctgactttg
    11281 aactgagcga agttcaggcg atcgagatga tcaacatgac gcatggcgga ttccagcaac
    11341 gcctgcggcg tcggttcgcc atacttttct tgcagatctt tttccagcga tccggcgtta
    11401 acgccaatac ggatcggaat gtttttatcg cgcgcacagt caaccaccat gcgaatacgc
    11461 tcttcattac cgatattgcc agggttaata cgcagacaat cgacgccgta ttccgctact
    11521 ttcagcgcaa tgcgatagtc gaagtggatg tcagccacca gcggcacgtt aacccgctgt
    11581 ttgatgagtt tgaacgcttc tgcctcgtcc atcgtcggta cggagacacg gacgatatca
    11641 gcgccaacgc gttccagcgc cttgatttga ttgaccgttg cttcgacatc tgtcgtacgc
    11701 gtattggtca tggactgtac ggcgatggga gcaccatcgc caatcggcac attcccaacg
    11761 taaatacgtg ttgattttct acgttgaatt ggagcctggt tatgcatgaa aaatctcccg
    11821 cgttacccgt ctgttactgc gccggtgatt gttcggcatt gagggtcaga cgcgcaacct
    11881 ggttagttct gataaaacga ctcagatcga caggtttccc ttgatactgg atctgtactg
    11941 cggctggcgc accaattttc agtttgtacg gtgcctggcc ggttaagttc aaattaccgt
    12001 ctttacgctg cataccgcta aacaattttt taccagtagc atcagtgacc tccagccagc
    12061 aatcggcagt aaagttcatc accagcgcat tcggatcagc caccggcgtg gtcacgccag
    12121 cctgatcggt tggcaacggc gcagcaccat ctggcgttgt tgctgccgtt ggtgccgggg
    12181 tcgcggcggt atcaacattt gcctgcgaag gcgaaacaac cgcattctgt tgcggatcaa
    12241 cagctggtgc tggcgcagtt acggcaggtg tttgcgtgtt ggttgcggta gtatccacag
    12301 acgctggcgg cgtggacgtt gtagccgggt ctgtagttgt cgacgtattt aacggaacac
    12361 tctgcccctg ctcgctatta ctgctcagtt ccgccgaaga ttgatcggcc atagtggtga
    12421 tctcttcctg ctgagctttg tggtcttgcc accaccaggc accgctcagg ccgataacca
    12481 caaacagcac cagccaggtg aaggtcatca gccagccgtc acgttttttg cggcgtttac
    12541 cgagggaaaa actctgcatc ggcgcaactt tcgcagcccg tagtggagcc tgcttttcca
    12601 gccctggcag cagttcttct tctggaatat gtaccagacg cgcataagag cggatatatc
    12661 cgcgcaggaa tgttgaagca agatcggcgg gtgccttatc ttcttcaatg tcgcgtaccg
    12721 tggaaacctt caggcaaagt cgctcggcaa cggcctgctg actaagtcct agttgttcgc
    12781 gagcattacg caggcgagcg ccggtagtaa gtgcttcatt ttggtcgtgc gtggcttcag
    12841 tattcattcg ctgcaggtac gtttaaatga gaattgagat gccggtgaac catcatgctc
    12901 acccacaccg cgaaacatcc gttaagttaa ccgttatcat acagtataag accgtctgtg
    12961 tgctcgtgac aaagcccaca ttcactaagg ctaacttact gttgcatcgt tacatactgc
    13021 cttaaagtca gcaaaaacgc accgttaata ttgaccagac aattgcaact taatacttca
    13081 ttcataaaag attacgccac ggtacataaa gtaaccgtgg cgtaatggct atcagactgc
    13141 tttaatgtcg atggcttcac cctgcatccg tttacgcagg gtacgtttcg tacggtcgat
    13201 aacatcgccc gccaactgac cacaggcagc atcgatatca tcaccacgag ttttacgcac
    13261 aatagtggtg aaaccgtagc tcatcagcac ttttgagaaa cggtcgatac ggctgttcga
    13321 actgcgtcca tacggcgcgc ccgggaacgg gttccacggg atcaggttga tcttacacgg
    13381 cgtatctttc agcagctccg ccagttggtg cgcgtgttca gtgccgtcgt taacgtggtc
    13441 aagcatcacg tattcaatag tgactcggcc ctgattggcg ttggatttct ccagataacg
    13501 gcgcaccgca gcaaggaacg tttcgatatt gtactttttg ttgatcggca caatttcgtc
    13561 acgaatttcg tcgttcggcg cgtgcaggga aattgccagt gcaacgtcga tcatatcgcc
    13621 cagtttatcc agcgccggaa ctacaccgga agtagaaagc gtgacgcgac gtttagacag
    13681 gccaaaaccg aaatcatcaa gcatgatttc catcgccgga acgacgttgt tcaggttgag
    13741 cagcggctcg cccatgccca tcatcactac gttagtgatt gggcgctgac cggtgacttt
    13801 tgctgcgccg acgattttcg ccgcacgcca cacctggccg ataatttccg acacccgcag
    13861 gttgcggtta aagccctgct gggcggtgga acagaattta cactccagcg cacaccccac
    13921 ctgcgaagag acgcagagcg tggcacggtc gtcttccggg atatacaccg tttcgacgcg
    13981 ctgatcgcca acggcgatcg cccatttaat ggtgccgtcg gatgaacgct gttcttcaac
    14041 cacttccggt gcgcggattt ccgccacctc tttcagtttg ccgcgcaaca ctttgttgat
    14101 gtcggtcatc tcatcaaagt tgtcgcagca atagtgatac atccacttca tcacctgatc
    14161 ggcgcggaag ggtttttcac ctaaatcttt aaaaaactcc cgcatctgct gacggttgag
    14221 atccagcagg ttgatttttc catctttcgt ggtgacgttt tcaggtgtga ctaattgttc
    14281 agacatatgc tattccggcc tcgttattac acgttatggc ccctggaggg ttgaaaaaag
    14341 aaacgccccg gtgagcggct gctcgtccgg gggcgctgca ttgtacaaat tctggcgcac
    14401 ggatgccacg tttgcacgcg gcatttacga aattattaac gggtgcgcgg gcacacttcg
    14461 ccttcgccaa agaaataagc gatttcgcga gcggcagatt cgacggaatc agaaccgtgg
    14521 gtaccgtttt cggtcaggct gtcagcgtaa tcagcgcgca gagtaccagc cagtgcgttt
    14581 gccggattgg tcgcgcccag cagatcgcgg tgacgctgaa cggcgttttc accttccagc
    14641 acggaaacca cgatcgggcc agaggtcatg aattcaacca gaccatcaaa gaacggtttt
    14701 ccatcgtgtt cagcataaaa gccacgtgcc tgttcaacgg tcaggtgcag cattttggtg
    14761 ccgacaattt tgaaccctgc agcttcaaag cgcgcaaaga tattaccaat gacgtttttt
    14821 gctaccgcgt tcggtttgat gatggaaaaa gtacgttcaa tagccatttt tacctctgta
    14881 aattgttctg ttgttgtctg taccagcgta cgagatggcg cggattataa tgagcaacag
    14941 ggccgttgac tattgatgaa ggtaacattt ttttaaaata aaatgagttt tagcaacaat
    15001 cagggacaaa acagactatt gcatgacaaa tttcactgtc gcgatttgcc ccacgtcatc
    15061 catcaccagc aattgataat cacctttatc cgtcaaatgc agggtcacgt tgcgcccgcg
    15121 ttcagttaac ggttcgccat tcagaaacca ccagcgttca cctgcccctc cacttgattg
    15181 caacggcaaa gtcgcttccg ctgcgcccgg taaacgttta ataatcgcgc catcgcgaac
    15241 gcctgtcagc tgcagcggga gctgggcatc gtgaccgtat ggcgggcaac ttgtcgaggc
    15301 cggtggtaag cgcacagcgc gacgttctga tgcgggcagc cagggttcca gcggtagcgg
    15361 ccagacattt atcatttctt gtcgcgcttg cgggcaatca gcggcaacac gtttgccatt
    15421 ttcatccagc cagatgggga aacgaatgcc attaatgcct tcctgctccg gcagtaatag
    15481 agttggcggc tgactcccgt ccagcagcca ggttgccagg cggcggcgac agttaccgtc
    15541 accttccggc aaagactgtc cgcccggcca gcagataacg ccacgagtga ctgagttcgg
    15601 gcgcgggtct tccggcagat tcgcactgcg cgacagtaag atattattga cctgattcaa
    15661 caatggtacg gcactggcaa agccaaactg accaacaacg ggcgtgccgt ccggtctgcc
    15721 agtccagatc ccaatgacat agcgagcgtt aaccccaatc gcccaggcgt cacgatagcc
    15781 atagctggtg cccgttttcc atgccagtgg ggcgacgcgc ggcaaggcac tatccggcaa
    15841 gggttgcgct tcatcagcca taatccggcg aatgatccac gccgcccccg acgacattaa
    15901 aggccgttca agcagcggat cgtcaggctg taagcgcaat ttgcctgcct tgccgtggcg
    15961 agcaaacgcg gtatacgctg ccgccatatc ttccagtttt gcaccagcgc cgccgagaat
    16021 gagtgaaaga ttcggcgcag caccgttggg caaatataac ggcaatccaa cattgcgtaa
    16081 ctttgccgca aaccgtttcg gtccataggc ttccagcacc tgcacagcag gtaagttcag
    16141 cgagcgcacc agcgcctcgc tcatgctgat cgggccatga aaaccgctat caaagttacc
    16201 tggtcgataa tcaccggtgc gccgggggac gtcttgcagc agtgatgccg ggtggatcaa
    16261 gccttcatcc agcgccagac cataaacaaa cggtttgagc accgatcctg gcgatcggat
    16321 cgcattgacc atatcaacat gaccaaagcg tgaatcatcg ttgagatcaa ccgatcccac
    16381 ccagccgcga acacgcatat cggtatgatc aaccacgatc atcgccagtg agctgcgcgg
    16441 tggcaaccgc cctttccagt tttgcgccag ttcttccaga cgtcgttgaa gaccggcatc
    16501 cagcgtagta acgattttgt cgcttttgct tttaccgagc atcatgcgcg aaaacagcgg
    16561 tgccagttgc ggcatttgtc ggggtgccag ccagatgggt tcttcccttg actcttttac
    16621 ctgctcacgg gaccacacac cttgcacggc catccgttcg agcactttat tacgcgcggc
    16681 ttcggcacgc tccggccaac gatccgggcg cactcggctg ggcgcttgcg gtaacaccgc
    16741 cagcattgcc gcctcggaat agcttaaatt cgcaggcgat tttccgagat aagcccaact
    16801 tgccgcaccg atcccctgca acgtaccgcc aaacggagcg cggttaagat acaagatcag
    16861 aatttcacgc ttagacaaat gccactccag ttgcaacgcg cgccagagct ggagaatttt
    16921 gccaccaaat gttttggggt gaggatcaag cagacgagca acctgcatag tgagcgtgct
    16981 gccaccagaa ataacccgtc ccgaagtgag atcttgccat gctgcgcgcg ccaccgagaa
    17041 tggattcacc cccggatgct tccagaacca gcgatcttca taattgatca gcgcttcaag
    17101 gtaacgtgga gacacatctt cgattgttac cggataacgc cagatgccat cagcatcggc
    17161 gaagcgccag agcggcgtac catcctgcgc cacgaccact cgtgcgggat tgacttcatg
    17221 cagcggtaga ggccagagtt tatctgctcc ccacgctgca agaaaaagga gaaatggcac
    17281 agctgccagc gttatccagc agccgcgttt ggttaacaag cgaagcattt acggtcggac
    17341 aatcagcaga tcttcagccg cgccggtcgc ccgccattgg ggaacataca ttgattccac
    17401 catcggttgc ggtacctgat acgttcccgg cgtcaccgcc cgcgccagat acaccagcgt
    17461 taccggttgg tattcatcaa cggcaaccgc cgccacaaag cgatcgtcac ggaactcaat
    17521 gtgcttaatg ctcgcctgct gcatctggtt cagtaagttt tgcacttcgc caccactttg
    17581 ctccaggctg gcgctaccgt tcgccagatt ctgattttcc agttccagac ccgcaggcag
    17641 cagatccacg actaacgcat ccggcacgct gttactggct tttacctgca accagaccag
    17701 caccagatcg ccgctacgta acgagtccag cgatttgctc ttaccatcag taccaagaat
    17761 atgacgctcg atttgcagca tattgttcgc cggtaaaggt gcggattgcg gataaccgct
    17821 ggcatccata cgcaaccata acggctgatc gccactgttt ctcacctgca aggtggcaag
    17881 ttgatcgcta ttcagattgc tgtttagcgt tttctcgcct gtcagcggct cagctgagaa
    17941 agaggtttgc gcctgccatt tacccggtaa atcctgaatc gtacgggcag ccaggaacaa
    18001 cgcgttactt tcctgcgtcg atagacagcg ttcaccaaac gcctgctgcg aaagtgtgtt
    18061 cagcaaagtg tactgctcat cgggtagcag tttattttct tccagcaagg agagcattaa
    18121 cgcgttgtcg cgcagtggac taccgtaatc acccagccat atccgctcat cactatttct
    18181 cggcgttttc agcgccagca caatcgcttc ttcaccacgc gttgcatcac ccatggtttt
    18241 cagcgcaatg ccaagttgca gcagcggtaa accagaagcg gcatctgcac gatgctccca
    18301 gatttcacgc agcgcaccca gtggtgcttt ttgctgacgg gccagcacca gcgcagcgta
    18361 agactgaacg gcgaatttac tggctttgag attatccgcg tacgggatcg acatcatgcc
    18421 cggatcttgt aaatagcgca gcagacgctc attaccccgg ttaatggcgt ctgtcggcac
    18481 gctgtaaccc tgttcgcctg cgcggaccag gaaatccatc acgtaagccg tcagccagta
    18541 ctcttcgtca ccgtttttat cccacagcgc aaagccgccg ttatcacgtt gcatttgcag
    18601 caaacgggaa atgccgatat cgaccgatgc acggcgtttc tcatcactgt cgcctttgat
    18661 gcccaacgcc tgcagttggg ctgcgttggt ataaagtgac gggaacaggc cgctggcggt
    18721 ttgctcaaga cagccgtacg gatacgcttt taactctttg atataacgtg caatgttcag
    18781 cggtggtttg ccgctcaaca acaattgccc ttccagcgta acaggcgaga agttttgcaa
    18841 tccatccgcc ggaatcgccc atgtctcacc aggctgtaac gccgtaccgt aattaaccgt
    18901 ttgtgctggg aacgccggac ggacgccgat tttccactgc ttatgctgat cggcaacggt
    18961 ttcacccggt aacgctaacc cgctaatggt ggcctgaatt tctccatcgc cataacccgg
    19021 caatgctcgc actgggataa acagcgtagt acgcacacct ggcgctaatt caacggctgc
    19081 gggtgaatcg ctgaccagtt caagcaaacc actggcggtc agggcaacgt tcagtttttg
    19141 cggtttatcg gtaagattag tgatatccag cgtcagacgc gaggtatcgc cactcgccat
    19201 aaagcgcggc atgttcagtt cagcaatcac cggtgcggca actatcactt tgctttcgtt
    19261 gctaccgaaa tcatctgccg tccaggcttg cgccatgacg cgcaattcac cgttaaaatc
    19321 gccaatcggc agtgtaaccg agccttcgcc ctgttcgttg agcgttaccg gcagcgcctg
    19381 ctgcgcgaca atattgacgt gattgaccgg cggtttacca ccacgtttca gctcatcacc
    19441 atcgccaccg aaacgcagag ctgccagacg cccctgacct tcaataacct gaccgtaaat
    19501 atcgtaaatg tctgcgccat agcgtttctg accaaagaac gcctgccacg gatctggcgt
    19561 gacgtagtca gtaatattca gcacaccact atcaacggca gacaccagca cattcacctg
    19621 tttaggcttc tcgccatttt tagtgctggc tttaattttc acggttaatg gttgattggg
    19681 acgcattttt gctggtgttt ccagcgccag atcgaggcga cggttttcat cgccaagcgg
    19741 cagatgcaac acaccaaccg cgcgttttgg cgtcgcggag cgagatttat cgccaggacg
    19801 taccaccagc gtacttaaat acagatcatg acgattccag gttttatcga ccggaatcgt
    19861 cagatccagc ccttgagccg gaacatcaat ctcttgccac cacagcggcc cttcactgga
    19921 ctcgaccatc gcataacctt tacccgccgt tggcgcggcg atatgcaact taatggtgtc
    19981 gccagggcga taactggctt tatccagttt cagcgtgaca cggtcgggtc gcactgcgcc
    20041 gctaccgtcg ctgttgtcct gccagctata gccagcccag aaacgaacac tactgaccgc
    20101 ttcattcggc gctttgactt ccagacgata agcgccccac tctaccggaa aactgacctt
    20161 gccggtttcg tccgctttca gatccagagt ttgttcattt tcgatcagat ctttttgatc
    20221 aaactgtgac tgccagcctt catcttctga ccagttccag tagtaatcgc ggcgttcgcg
    20281 aatcaggcgc acctgcaagc ccgacacggc ttttttcacg ccttgtgcat cgctataaac
    20341 gatgtcaaaa gcggcgttac tgccttcatc aacaatgggc tgtttcaccg tgctgtcagt
    20401 gcgataatcg taaaccgatt tcaaggcgaa ctgcggacgg agccccggca atgcatcggc
    20461 aggccagata gcctgctcag cgcggcgcgt caccgggcga ccgcccgatt ccagcaaact
    20521 gccctggaaa ataacctgca atggggaatg cgtttccttc cactggcttt ctgtagaaac
    20581 ttcgccgcgc cctttatcat ccagcgtcaa ctgaacttca tccagcgtgc gggaaaggtt
    20641 ttcggcagct atatcgccga attcaaaacc aggtaaggct gacacagcct cacgcagtgg
    20701 gcgcaggaaa agttgccctt gcaaagtatt accattagca ggcgcaccgt acaggtagta
    20761 tcccaccacg gagaatttca cttcatcatt cggcgtaagc ggggttttct caccggtcag
    20821 attcagcgcc atacgctctg gcataaaatc ttcgacgtgg aaatcccaca tccggtactg
    20881 gttatcgccc gtgttggcgc gaatatgcca cataccggtt gccgcattgc tatcgagtgg
    20941 ccaggtaaag tggtagaggc cattctccgg ctgactaacg acgctcctga gtacctgccc
    21001 gtcaggttta atcacgtcta acttgatggg gtgatcgggc aatgctttac cgtctgcatc
    21061 gcgcagtaaa ccattgagga ttaccgtttc acctgggcga taaagatcgc gtgggccaaa
    21121 catgaaaaac tgtttgctat agcctggcgc gccagcaatg ttaaattctg ctaagtccag
    21181 cgccggaagt tttaaatcga gtagcgttgt ctgaccgtct ttacgtgcca gcagtaatgc
    21241 cgcattttta tcattttcca gctgcacatg cccctgagcg tcactggttg cctgagtcag
    21301 agtctgccct ttctcattta ataaagagac ttcaattcct tgctgggccg cgccgttttc
    21361 cagactttgg gtaaagatat ccagacgatt gtgataacgg tgagctgaaa cgccgatatc
    21421 acttaacgta aacagcgtcg cgggattact gtaatcgtaa cgtccagcct gattcatcac
    21481 agccagatac acgcccgcct gctgaagcgg tttgatatcg cccagcggca gcaataattt
    21541 ttcacgggtg ttacgcgcag gattgagatc aaaccgtccg gtgtagacca gatccgccat
    21601 ctgcagcagt ttgtctgact gccagttcgc cagcgaattg cggtattccc attggctaat
    21661 gaatgctggc agagattctg gcttaacgcg gaagaagtta acatcgacat tattaacgtt
    21721 gagcgccatt accggcagcc cttcaacgac tttgccaggc agcagcgaac cacggctggc
    21781 aaaaccgacg ctgggttgga tgtcgcgggt agttatagtt ttttcgtaat ctttactgaa
    21841 ggttgcgttg ttgagtgctt tgacctcctt gccaatagta acgatcaaat cacgtttcgg
    21901 ttcgaggtgg cgtaaacgta gctctttaag attatctgac agctcccagg caccatccac
    21961 tttgccgctt tttttatcga cgacatgaat aacgcgtgag aaatcctgat ccgggtcgag
    22021 agggatggag aacgtcagca ccagcgtggc tgcaccatca agttggactt cagagagagc
    22081 cagcaatgtc agcaccttac cggcactctg ttgggccagt ttttgtctct ccggcacgga
    22141 gagttttgct gaactcgcgt tttctgaaga ggccgcttta gtaacttcag aaggcgcatc
    22201 ttttttcacc gctgttggcg cgttatcgtt gttgtcgcac cctgccagcg ccagcattag
    22261 catgcaggcg gctacgcgta actttttcat ttttcatccc tgccacaatg gcccgttagc
    22321 aacgtcgaat aattattatg cgtgagaatt tacgttatgt aattcagtat cacgcccata
    22381 caatccgaat tttagtgaga attgtggctc agacagccaa atcagcctct ttcgcttgtc
    22441 gcttttcact aaacatccga caatttagcc taaccccggc aaaaatggag atgcctatgt
    22501 ccacgacatg gtttgtagga gccgactggc tcgccgaaca tattgatgac ccggaaattc
    22561 agattatcga tgcccgcatg gcgtcgcctg gacaggaaga tcgtaacgtt gctcaggagt
    22621 atctgaatgg acatattccc ggcgcagtgt tttttgatat caaagcgctt tctgatcaca
    22681 cttccccgct tccgcacatg ctgccgcgcc cggaaacgtt cgccgtggcg atgcgtgaat
    22741 taggcgttaa ccaggataag cacctgattg tctatgacga aggtaatctt ttctcagccc
    22801 cacgagcatg gtggatgctg cgcacctttg gtgtagagaa agtgtcgatt ctggggggtg
    22861 gacttgcagg ctggcagcgc gatgatctgc tgttagaaga aggtgcagta gagctgccgg
    22921 aaggagagtt taacgccgcg tttaatcctg aagccgtggt gaaagtaacc gatgtattat
    22981 tggcaagcca tgaaaatacg gcgcaaatta ttgatgcccg cccggctgca cgttttaacg
    23041 cagaagttga tgaacctcgc ccaggtttac gtcgcggaca tattcccgga gcactgaatg
    23101 ttccgtggac ggaactggtg cgcgaaggcg aactaaaaac gaccgatgaa ctggatgcga
    23161 tattttttgg tcgcggcgtc agctacgaca aaccaattat cgtcagctgc ggctctggtg
    23221 taacggcagc cgtggttttg ttagcactcg cgacgctgga tgtgccaaac gtgaaactgt
    23281 acgacggcgc atggagtgaa tggggcgcgc gggcagattt accggttgag ccagtgaaat
    23341 aagtatttta caggcaataa aaaaccgccg aatttggcgg ttttttattg ctggtctggt
    23401 tcgcggcctt tccagcaggt tgtattaccg tagtaatgca agcgcgtctc agcggagaca
    23461 atactcgcca gtaactctct ttttgtcaag caaaagagag ttattattgt tctgttagta
    23521 tattatccac tgcggccctt tccgccgtct cgcaagcggg cgctggctta aggaaaggat
    23581 attgcgcgac cgttagagca agcgcgtctc agcgcttgct atcgcggcaa tatcgccagt
    23641 ggtgctgtcg tgatgcggtc ttcgcatgga ccgcacaatg aagatacggt gcttctgtat
    23701 cgtacttatt gtttctggtg cgctgttttc ccaagtaaat aataaccgaa gtctctccgg
    23761 cgacaattta ctggtggtta acaaccttca gagcagcaag taagcccgaa tgccgccctt
    23821 tagggcggca tattttagat tatccggttt tgtttaaagt cacgcaaaaa acctccccag
    23881 cgacgttcat agaatggcac aatatgttcg gtaataaagt ggctaattcc tttttcccct
    23941 tttttcacct gacaaatatc gattggttca tcgccaggta atgtatcggt cgctacactt
    24001 cccgtcgcct gaataatttc ttcgatatca ccatcggctt caatgccaat aaataaatta
    24061 ggctgtgcct cttcgttctc tttaattgaa caaataaaag cacgcttcac cggcttaatg
    24121 gttttaaata aggtggtgag tgaatcaatc atttgtgctg gcggctctgc gacttccgat
    24181 aatatcagcg attcaccgcc ttccaggatt tcctggctgc tcagcggatt tccctcttca
    24241 ccaatcaaca aactgatttc acgcggcata aattctttac cggtcggcag tttggcatta
    24301 aggaagagcg tttcgccaag ggtcatctca aacaatgtgc gaacgggcat tacgacaaat
    24361 gcctgttcgt cttcaaccgc ctgttgaagc gcttctaacg aggtgaaaaa aggaatgacg
    24421 ctggtgccgt cttctttttc ccagtgctgt aaatcaagcg cactatcttc aaccacagcc
    24481 tcgccctgcg ccgccgtacc aggcacccag acggtggatt ccagtagagt acggaaaaag
    24541 gccgggcggt gcgccggttc ggttgctgct ttttccagca ggtcttcaag ttcgtttttt
    24601 gtttcggaca taagaaccac aattcattca acgttcgggg cgcaaatgcc tgatgcgcta
    24661 cgcttatcag gcctacaagg gattcgcaat ttgttgaatt tgcagaattt gtaggccgga
    24721 taaggcgttt acgccgcatc cggcatatta gtttacgccg ttaacagatt agctatcgtg
    24781 cgcacaccaa gtcccgtagc gcccgcagac cactgttcaa ccggcgcttt acggtaagtc
    24841 gccgagcagt cgatatgcag ccagccttgc tgatagttct caacaaagtg cgacaggaag
    24901 cccgccgccg tgctcgcgcc tgccggatac gccgcgcttc cggtattgtt cagttcggca
    24961 aagttagacg gcagctggct gcggtggaat tccgccagcg gcagacgcca gaatggttcg
    25021 ttctcttgtg aggcactcgc cagcaaacga ccggcaagcg catcgtcaaa actgaacagc
    25081 gcgtgataat cattacccag cgcagttttc gccgccccgg tgagggtcgc cgcatcaatg
    25141 atcatttccg gtttctgcgc actggcatca atcagaccat cggcaagcac cagacgccct
    25201 tcggcatcag tgttcatcac ttcaactttt ttaccgttgc gataggtgat gatatcgccc
    25261 agcttgaacg cattgccgct aatcaggtta tccgcacagc agaggaacag cttcacgcgc
    25321 ttgttcagtc cgcgcgtaat ggcaaatgcc agcgccccgg taaccgttgc cgcgccgccc
    25381 atgtccgact tcatcgagtc cataaacgca gtctgtttga tgctgtagcc gccggagtca
    25441 aaagtgatac ctttacctac caggcacgcg tacactggcg cttctttatc gccagttggg
    25501 ttgtaatcca gcgccagcaa taccggagaa cgttctgaag cgcgtccgac ggtgtgcagc
    25561 cccatataac cttgctcacg cagatcttcg cctttggtga tccgataagt cacacgatcg
    25621 cccgcgacgt tgctgatcag atcaacagca cgctgtgcca gttgcgatgg tcccaattct
    25681 tctgccggtg cgttgatggt gtcacgcacc cagtcgatga tcatcaggcg gttatccagt
    25741 tcctggcgct gggcatcgtc cagatccggc cactccactt tacgcgtgcc tttcggggct
    25801 ttgtaacctt gccagaatgc ccagcagcga tccgcatccc agccttcacc gcttaactga
    25861 acatgcttga tgcccagacc gtcaatcttg cgcgccgcac gctgaatcag ccccagatcg
    25921 tctgccccgt tcaaatgcag ggtaatgccg tcattattaa tgctgtaagt tgctttttct
    25981 ccccagcgcg cgtcggcaag ttgggtagag agggtaatct tcatcgcttc tgtcatttta
    26041 gttatccttc tttgtaaaag ggccgccagt tggcagcccc aggatttttc cgctaaatga
    26101 ttcgcgttgc aggaaggcgg caagtgagtg aagccccagg agcatagata actatgtgac
    26161 tggggtgaac gagcgcagcc aacgcatctg cggcgtgaag catgacgcgg aaattattcg
    26221 gcctcgtcca gccagactaa caaaatcgct tcgaggattt tctcgttgga tgcctgcggg
    26281 tcgtcgtcga aatcttccag atcgcaaatc cactgatgca tatcggtgaa tcgaaccgtt
    26341 ttcggatcaa gatcaggata cgcatcgtac agtgcttcgc caatttcgcg gctatcggtc
    26401 cacttaagtc ccatactaac ctctgttaat gctcacgcgc atggttgata gtgtaacgcg
    26461 ggatttcgac tactaaatct tcgtcggtaa cgcgtgcctg gcagcttaaa cggctttcgg
    26521 gctccagtcc ccaggctttg tccagcatgt cgtcttcctg ctctgagctt tctggcagcg
    26581 agtcaaaacc ttcacgaacg atgcagtggc aggtggtgca agcacaggat ttttcacagg
    26641 cgtgttcaat ctcgataccg ttacgcagcg ctgcgtcgag aatggtttca ccgctattag
    26701 cttccagaac agcgccatca gggcagaggt cctgatgagg caaaataaca atctttggca
    26761 tattaaacct cgtccacgga atggcctttc agcgcacgac gaaccgactg gtccatgcgg
    26821 cgagcggcga aatcctgggt ttgtttgtct acgtttttaa tcgcttgttc gatggcgtca
    26881 acatcatcgc cctgagccac ttcactcagg tgagcggcag cattgtcaat gacctgacgc
    26941 tctgcggcgc ttaacagcgc ggcatcagca gccagcgcgc cgtgcagact ttccagcaca
    27001 cgcgccgctt ctactttttg ttctgccagc atacgggctt ttacgtcctg ctcggcatag
    27061 ctcattgaat ctttgatcat cgaagcgatt tcgctatcgg tcagaccgta agaaggtttg
    27121 acctgaatag acgcctcaac gccggtggat ttctccatcg ccgtcacgct caaaagaccg
    27181 tcggcatcga cctggaacgt cacgcgaata tgcgcaccgc cagccggtag cgccggaata
    27241 ccacgcagcg caaaacgcgc cagtgagcgg cagtcctgca ccagttcgcg ctcaccctgc
    27301 attacatgga tagacatcgc cgtctgacca tctttaaagg tggtgaaatc ctgagcgcgg
    27361 gccaccggaa tagtggtatt acgcggaatc actttctcca ccaggccgcc catcgtttcg
    27421 aggcccagcg acagtgggat cacatcaagc agcagcattt cgctgtccgg cttgttaccc
    27481 accagaatat ccgcctgaat cgccgcgcca atagcgacga ctttatccgg gtcgatggaa
    27541 gtcagcggtg gacgaccgaa aaattcgcct acccgttcac gcaccagcgg cacgcgagta
    27601 gaaccgccaa ccatcaccac ttccagcact tcatcagctt ctacgcccgc gtctttcagc
    27661 gcacgacgac aagccagtaa ggttcgtttt accagtggcg cgatcagttc attgaattgt
    27721 tcacggctga tttcgccctg ccagcccgca acgttaacgg tcacggagtc cgcatcgctc
    27781 agcgcgattt tggctgcaat ggcggcatcc agcagttcac gctgaacgcg gttatcgcta
    27841 cgatcaggaa tgtccgcctg ctcgcgaatg taatccgcca gcagatggtc gaaatcatcg
    27901 ccgccgagcg cggaatcacc gccggttgcc agcacttcaa acacgccgcg acttaagcgc
    27961 agaatggaaa tatcaaacgt cccgccaccg aggtcataaa cggcgatcac gccttcctga
    28021 ccggaatcca gcccgtaggc gatagccgca gcggtcggtt cgttaagtaa gcgcagaaca
    28081 tgcaaccccg ccagacgcgc cgcgtctttg gtgccctgac gctgggcatc gtcaaagtac
    28141 gccggaacgg tgataacgac accatccagc tcgcctgcca gggcttcagt tgcccgcgcc
    28201 gccagtgctt tgaggatgtc cgcagaaacg cgcaccgggt tcagcagccc cgccgccgtt
    28261 tcaatcattg gcaggccgtt ttcgctggcc tggaattgat aaggcaaatg cggatagcgt
    28321 tgctggatat cagccagcga gcgtcccatc aggcgtttaa cagaactaat ggtgttggcg
    28381 gtatcgagcg ctgcgttagt acgcgcgtca taacccaccg aatgcccttg ctgttgatag
    28441 tgaacaacag atggcagcag gtgacggcct tcatggtcgg ctaacgtttc ggcctgaccg
    28501 ctgcgcactg tcgctaccag cgagttggtt gtgcccaggt caataccggc cgccagacga
    28561 cgctgatgcg gcgcagcact caaaccaggt tcactaattt gtaataaggc catgtttagc
    28621 ttccagaaat taaaaatcga gcagtttttc ttcgagttgt tcggcactgc ttcgcagttt
    28681 atcgagaaaa cgcagcttac gcacggtatc cgccgccgcg tcccacgtct cgttgtctaa
    28741 ctgttcaacc atcaactgat ggcgggtatc aaacatcttt ttcacacgtt taataaagct
    28801 ttccagccgc gcttcatctt tcgcctgttc gatctcgtcc agttcttcgc gcagctccag
    28861 ctgttccatc aggaacgcgg tgtcgcgcac agtatgctgc tcgctggcga gatcaaaacc
    28921 gtgcaaagaa agcaaatatt ccgcgcgcat taacggatga cgcagcgttt gccaggcctg
    28981 gttaatggtt gcagattgct gtacggcggc gagttgttcc gcctggcttc cgctggcgaa
    29041 tttatcagga tgatactgac gttgtagatc ctgaaaacgc aggctcagtg cctgggtatc
    29101 gagttgataa cgggcaggca agccaaagag ggtgaagtaa tccataacat tctcagggct
    29161 gcgatccgcc gcgataacgg cgaatcaggt aaaacaaacc ccacgcgcag gcgaccacgg
    29221 tggggttatc ggtatgcgca tcaaacgtgg aagctttcgc cgcaaccaca ctcatcttta
    29281 acgttcgggt tggtgaattt aaacccttca ttcaggcctt cttttacgaa gtccagctgc
    29341 gtaccgtcca gaaattgcag gcttttgcca tcgaccacga ctttcacgcc tttgtcttca
    29401 aacacgatgt cttccggcgt cggttcgtca acaaattcca gtacataagc catacctgaa
    29461 catccggagg ttctcacgcc cagacgcagg ccaaaccctt tgccgcggtt agccagaaag
    29521 gtatttactc gcgctgctgc actgtcgctc agtgtaatcg acataaccaa acctcaactc
    29581 ttattttgct tcacgtttgc ttttatagtc cgcaatggcg gctttgatcg cgtcttctgc
    29641 cagaatagaa cagtgaattt tcaccggcgg cagttcaagt tcttcagcaa tatcggtgtt
    29701 tttgatcgcc tgcgcttcga cgagagactt ccctttcacc cattcggtga ccagggagct
    29761 ggaagcgata gcagaaccgc agccgtaagt tttaaaacgc gcgtcttcaa tgataccttc
    29821 atcgttgact ttaatctgca acttcatcac gtcgccacag gccggtgcac ccaccatgcc
    29881 gctgccgacg ttctcgtcgt tgttgtcaaa ggaacccacg ttacgcggat tctcgtaatg
    29941 gtcgataact ttttcgctgt aagccattat aaattctcct gattccgata ccgattaatg
    30001 atgagcccat tcgatgctgt tcagatccac gccctgcttg tacatttccc acagcggaga
    30061 aaggtcacgc agacgaccga tggatttacg aactaactcg atggtgtagt cgatctcttc
    30121 ttcagtagta aaacgaccta aagagaaacg gatagagcta tgtgccagct cgtcgttcag
    30181 ccccagcgcg cgcagcacgt aggacggttc gaggcttgct gacgtacagg cggaacctga
    30241 agaaactgcg aggtctttca gcgccataat cagtgactca ccttcaacgt agttgaagct
    30301 gacgttgaga atgttcggcg caccgtgttc caggtcaccg ttcaggtaaa cttcttcgat
    30361 atctttgatg ccgttccaca gacggttacg caggccgcgc agacgttcca tctcggtcgc
    30421 catctcttct tttgcgatgc gataggcctc gcccattccg acgatctggt gaacaggcag
    30481 agtgccggaa cgcataccgc gctcgtgacc gccgccgtgc atttgcgctt cgatgcgtac
    30541 gcgcggttta cgacgtacat acagcgcacc gatacctttc gggccataga ttttgtgacc
    30601 ggagaaagac atcaggtcaa ctttcaactg gctcaggtcg ataggcagtt tgcccacgct
    30661 ctgggttgca tcaacgtgat agataatgcc acgagcacgg cacatttcgc cgatagccgc
    30721 gatatcctgc accacgccga tttcgttatt tacgtgcatg atggaaacaa ggatggtgtc
    30781 gtcacgcatc gctgcttcaa gttctttcag gtcgataatg ccgttacgct gcggtgccag
    30841 gtaggtgact tcaaaacctt cgcgctccag ctgacggcag gtatccagta ccgctttgtg
    30901 ttcggttttg ctagtgatga tgtgcttgcc ttttttctga taaaagttgg ctgcaccttt
    30961 gatcgccagg ttgtcagatt cggttgcacc agaggtaaag acgatttcac gcggatcagc
    31021 gccgaccaga tcggcaatct gattacgggc gatatctacc gcttcttcag cctgccagcc
    31081 gaaacggtga gaacgagagg ccgggttacc aaaggttccg tccatcgtca tgaactgcat
    31141 cattttctcg gcaacacgcg ggtccaccgg cgtggttgcg gagtagtcga gataaatcgg
    31201 taatttcatt gctctataaa ctccgtacat cactcaatgc aaggaatcag gctaccggct
    31261 ggatgtacga ccgtgtttac ggagtattta gcactccggc ctgattctga attcttttta
    31321 ttaagcgcgt aacttaacgt cgatcgcgtc ttgtgtgcgg gtgcgtggcg cgtcgtgagt
    31381 atgctgacga ccagacacat ccagcacttc ctggttatta accagttcgc ctaaagtaat
    31441 gttgttgaga aaaccggtga gacggtcgct caaatcacgc cacagcgcgt gggtcaggca
    31501 tttatcgccg ccctggcagc cgcctttacc ctgacaacgg gtggcatcta cagattcgtc
    31561 aacggcgcta atcacttcgc caacggcgat gctgctggca tctttgccta acagataacc
    31621 accgcctggt ccacgtacgc tggaaaccag accattttta cgcagacggg aaaacagttg
    31681 ttccagataa gaaagggaaa ttccctgacg ttcggaaata tcagccaacg gtaccgggcc
    31741 cgcttcagag ttgagcgcaa cgtcaagcat tgcggtcacg gcatagcgcc ctttagatgt
    31801 cagtctcatg tcttacttca cctcaaactc gcccctgccc ggggtttttt attgtaaaag
    31861 tgggggtatt gaatagcagg gtcaagtctg acattcccga gtaaattggt caactattta
    31921 cttgactgat ttagtcgggt atttaacctt cagtgccatt tttttatcgt ggcgtttgta
    31981 cctgttgtcg gatgcggtgt gaacacctta tccgacctac ggttctgtac attgtaggcc
    32041 tgataagacg cgttaagcgt cgcatcaggc aactactgtt attcggcctt gttaccttta
    32101 ttctgctgct caatagaagc cagaatcccg cgcaggatat tcaattcctg gctttccggg
    32161 cgcgcacggg taaacagacg gcgcaattta ttcatcacct gccccggatg gttttcacgg
    32221 ataaaaccgg ttgccagcag cgtttgttcc agatgaccat aaaaacgctc cagatcatcg
    32281 accagcggat acggcgtctc ttcatgctcg acctgctcgc cgttttcctg agttgccagc
    32341 caggccatgc gcacttcata ggcaataacc tgaaccgcca tcgccaggtt cagcgagctg
    32401 tattccgggt tagccgcaat cgcgacatga taatggcatt tctgcaactc ttcattggtc
    32461 aagccgacgc gctcgcgacc aaacaccagc gccaccgggg tatttgccgc ttcagcgacg
    32521 cttttcaggc cgcattcgcg cgggtcgagc atcggccatg gcagcgtgcg ggaacgtgcg
    32581 ctggtgccca ccaccaagct acaaccggct aacgcttcgt cgagcgtatc gacgatgtga
    32641 gcattaccaa tcacatcgct ggcccctgct gccagggcaa tcgcctggga gtcgggtttc
    32701 accagtggat taaccagcca cagattggtt aatcccattg ttttcatggc acgggcaaca
    32761 gaacccatat tgccggtgtg tgacgtctcc accagcacaa ttcgaatatt ttgcagcatt
    32821 gtctttcttc atctaaagat tattcacgca tcttatcata aaacgaagac agatgccgat
    32881 ctcgctgcta tactctgcgc cgttttcccg ttctttaaca tccagtgaga gagaccgatg
    32941 catccgatgc tgaacatcgc cgtgcgcgca gcgcgcaagg cgggtaattt aattgccaaa
    33001 aactatgaaa ccccggacgc tgtagaagcg agccagaaag gcagtaacga tttcgtgacc
    33061 aacgtagata aagctgccga agcggtgatt atcgacacga ttcgtaaatc ttacccacag
    33121 cacaccatca tcaccgaaga aagcggtgaa cttgaaggta ctgatcagga tgttcaatgg
    33181 gttatcgatc cactggatgg tactaccaac tttatcaaac gtctgccgca cttcgcggta
    33241 tctatcgccg ttcgtatcaa aggccgcacc gaagttgctg tggtatacga tcctatgcgt
    33301 aacgaactgt tcaccgccac tcgcggtcag ggcgcacagc tgaacggcta ccgtctgcgc
    33361 ggtagcaccg ctcgcgatct cgacggtacc attctggcga ccggcttccc gttcaaagca
    33421 aaacagtacg ccactgccta catcaacatc gtcggcaaac tgttcaacga atgtgcagac
    33481 ttccgtcgta ccggttctgc ggcgctggat ctggcttacg tcgctgcggg tcgtgttgac
    33541 ggtttctttg aaatcggtct gcgtccgtgg gatttcgcgg caggcgagct gctggttcgt
    33601 gaagcgggcg gcatcgtcag cgacttcacc ggtggtcata actatatgct gaccggtaac
    33661 atcgttgctg gtaacccgcg tgttgtgaaa gccatgctgg cgaacatgcg tgacgagtta
    33721 agcgacgctc tgaagcgtta atgactcagg cgggtgatgt cactcacccg ccctcgcctt
    33781 tcaggcgcta ttccgaaata cttcctcacc gctttacttt ctttcgtcac tctcccacca
    33841 tctttccccg attaatggat gataaagaag tcacaaggaa aggttatggc gctgccagtg
    33901 aacaaacgcg ttctcaaaat tctgtttatt ctctttgttg ttgccttctg cgtttattta
    33961 gtgccgcgcg ttgccatcaa cttcttctat tatcctgacg ataaaattta cggtcccgac
    34021 ccctggtcgg cggaatccgt cgaatttacg gctaaggacg gtactcgtct gcaaggctgg
    34081 tttattcctt cttcgacggg ccctgctgac aatgccatcg caaccatcat tcatgctcac
    34141 ggcaatgccg gaaatatgtc cgcccactgg ccgctggtca gttggttacc cgagcgtaat
    34201 ttcaacgttt ttatgtttga ttatcgcggg tttggtaaat caaaaggcac gccgtcccag
    34261 gccggattgc tggacgatac gcaaagtgcc atcaatgtgg tgcgccatcg cagtgatgta
    34321 aacccacaac ggctggtgct gttcgggcag agtattggcg gggcgaatat tcttgctgtt
    34381 attggtcagg atgatcgtga aggcatacgt gcggtgatcc tcgactccac atttgcctct
    34441 tatgcaacca tcgccaatca gatgatcccc ggcagtggct acttacttga tgagagttac
    34501 agcggcgaaa attatatcgc cagcgtcagc ccgatcccgc ttttactcat tcacggtaaa
    34561 gctgatcacg ttatcccatg gcagcacagc gaaaagttgt atagcctagc aaaagagaca
    34621 aaacggttga tcctaatccc ggatggcgaa cacattgatg ctttttccga tcgtcacggc
    34681 gatgtttatc gcgaacagat ggtggacttt atccttagcg cgttgaatcc gcagaactaa
    34741 cccatgatcg ctagcacgat aatcattcac aaaaccacct taagacatgc taatccactg
    34801 gtcagaacag tttaagatga gaaaaattct gtgacgcttg ccaacatttc tgatgattag
    34861 cattcccttc gccatgtccc tgagcaaact ttagctattc ttatcaatta tgcttatggg
    34921 agatctacag atgatgccta cgcttgctcc accatctgtc ctttcggctc cccagcgccg
    34981 ctgccagatc ttgctgacgc tctttcagcc ggggttgacc gccaccatgg caaccttcag
    35041 cgagcttaat ggtgtggatg atgatattgc cagtcttgat atcagcgaaa caggacggga
    35101 gatcctgcgc tatcatcaac tcacactgac gactggttat gacggtagct accgggttga
    35161 aggtacagtg cttaaccaac gtttgtgttt atttcactgg ctacgacgtg gtttccgtct
    35221 gtgtccgtca tttattacca gccaattcac ccccgccctg aagagtgaac tgaagcggcg
    35281 cggaattgcg cgtaactttt acgacgatac caatctacaa gcgttagtga atctctgctc
    35341 ccgacggctg caaaaacgct ttgaaacgcg cgatattcat ttcctgtgtc tgtatctgca
    35401 atattgtttg ctgcaacacc acgctggaat tacgcctcag tttaatccgc tccaacgtcg
    35461 ctgggcggaa tcctgccttg aatttcaggt agcgcaggaa attggacgcc actggcagcg
    35521 tcgggcgctc cagcctgtac cgcctgatga gccactgttt atggcattac ttttttccat
    35581 gttgcgggtt cccgatccat tgcgtgatgc gcatcagcga gacagacaat tgcgtcagtc
    35641 tatcaaacgt ctggtaaacc attttcgtga gctgggaaat gttcgttttt atgatgaaca
    35701 ggggttatgc gatcagcttt atacccacct cgcccaggcg ttaaatcgca gtttgtttgc
    35761 catcggtatt gataataccc tgccagaaga gttcgccaga ctgtacccac gcctggtgcg
    35821 caccacccgc gcggcgctgg ccggatttga aagtgaatac ggcgtccatc tttctgatga
    35881 ggaaagtggt ctggtcgcag tgattttcgg tgcctggcta atgcaggaaa acgatctgca
    35941 tgaaaaacag attattcttc ttaccgggaa tgatagcgag cgagaagcgc agattgagca
    36001 gcagttacgc gaactaacgt tactgccgct caacattaaa catatgtcgg taaaggcatt
    36061 tttgcagaca ggcgctccgc gcggcgcggc actaattatt gcgccttata ccatgccgtt
    36121 accgctcttt tcaccaccgc tgatctatac ggacctgaca ctgacaacac atcaacagga
    36181 gcagatccgc aaaatgctcg aatcagcatg agggaacaac tttcgggcgc aaaaacattg
    36241 ccggaagcgc caccagcgcc attacccaga acacgccgtg gcccagatat tgatacagga
    36301 aaccggtgaa aacggtcatg atagctatac tgccgcccat cgcgacggca gagtaaaccg
    36361 cctgtaaacg gatgacttcg ctaccctggc gagcggcaat atagcgcatg gcggccaggt
    36421 ggcagaccgt gaaggtgccg caatgcagaa tttgcaccac tatcaaccac ggcaacgccg
    36481 tagttgctcc cataatgccc cagcgcacta cgccgcaaat cgccgagatc aacagcatat
    36541 cgcgtgcact acaacggcgg aaaagtttat tactcagcgc aaagataatg acttccgcca
    36601 ccacgcccag cgaccacaaa taccccaccg ccgaggccga gtagccagct gcctgccagt
    36661 aaatggcgct aaaaccgtaa taggccgcat gtgccccctg caataaacaa acgcaggcca
    36721 gaaagcgcca gttctgaaga accagcgcca accacgctga ccaaccggtg ctctcctgct
    36781 ggcggcttgc cccttgtggc tgaatcgtcg gacggatgag aaagccgagc agcatggatg
    36841 ccacgcccaa tgttaacagc gcgaggatca cctgataatc aaacatagtg accagtttgc
    36901 ccgtcagcgc cgagccaatg acaaacgcca ccgagcccca cagtcgcact ttgccgtaat
    36961 caagcgggaa ctgcttttgc cacgtattcg ccagtgcatc ggtcaacggt accagcggtg
    37021 agaaaaagag gttaaagcca atcatcacca gcatcagcca cgctacgtgc gcccccgccc
    37081 agaaggcgac agcaaagaga agtgtcatca ttgccagcac gcgcaaggcg gaaatcaggc
    37141 gagaaggatc gctgacgcgg ggcgcgatga gcaaactccc gagaaaacgg gcaaccagac
    37201 ctgcccccaa taacaggccg atggtttctg gcgttaaacc aatcccttta agccagacgc
    37261 tccagaaagg tagaaaaatg ccgtaactaa aaaagtatgt gaaatagccg agcgccaacc
    37321 agcgcgtgga ttgcaaaacc atgagtccct cccgtcagga ggcgttagtc tggggttaat
    37381 cgaatgttgg tgcaagttga aaaataagaa tattcgagcc tgcttcccga tgtctgtaac
    37441 gccagttcac aagcactaaa aaactgcgat ccgcgacgca tgttgcaaaa ataatgcgta
    37501 attatgccgt tacgcttgcc aaacgttcct gcacaatggc gatgaaatca cgtaatgccg
    37561 gcttcatctc ccctttcttc cacgccatca gtaaagcaat ggaaggcaca tttccggcaa
    37621 tgggacgaaa aacaacctgt ccggtattaa aattattcat ataaccgggt atcaaagtga
    37681 cgcccagccc catgcccacc agattcatgg tcaccagaat attcgttgcc acctggacga
    37741 tatttggctg gctgttttct tgcgcaaacc acgctttaac gatcggcgca agcgaaccgg
    37801 aatacgccgg atcggtactg acgaaattca cgccatccag ttgcgcggcg gtgatctctt
    37861 tttcatgtgc taaagggtga tcaaccggta acacaaccac taatggttcg tcaaaaagct
    37921 ccagataatc aatctccggg ctataaacag gatggcgggt aatgactcca aatta
//
LOCUS       DAJVUN010000013        37606 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.013, whole genome shotgun sequence.
ACCESSION   DAJVUN010000013 DAJVUN010000000
VERSION     DAJVUN010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37606
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.013"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1981
                     /locus_tag="OQQ76_000525"
     CDS             <1..1981
                     /locus_tag="OQQ76_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="catecholate siderophore receptor Fiu"
                     /protein_id="HCS1967121.1"
                     /translation="GAFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTF
                     NTEQVEVIKGPSGTDYGHSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQ
                     VIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNT
                     PDGGIPTIGLPGYSAPSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDIN
                     DNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILTN
                     QTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTRN
                     GANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPA
                     GVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSG
                     SGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYG
                     KKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWS
                     QYQATDDISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNV
                     YNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF"
     gene            2023..2700
                     /gene="ybiX"
                     /locus_tag="OQQ76_000526"
     CDS             2023..2700
                     /gene="ybiX"
                     /locus_tag="OQQ76_000526"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKHD-type hydroxylase YbiX"
                     /protein_id="HCS1967122.1"
                     /translation="MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQ
                     QVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVR
                     SHPQSGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV
                     TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENEEILSLLNLYHNL
                     LREWSEI"
     gene            2774..3040
                     /gene="ybiI"
                     /locus_tag="OQQ76_000527"
     CDS             2774..3040
                     /gene="ybiI"
                     /locus_tag="OQQ76_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc finger protein YbiI"
                     /protein_id="HCS1967123.1"
                     /translation="MASGLANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGA
                     PIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR"
     gene            3324..3554
                     /locus_tag="OQQ76_000528"
     CDS             3324..3554
                     /locus_tag="OQQ76_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1967124.1"
                     /translation="MALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAK
                     LAEKAAAAGASGYSITSATNNNKLSGTAVIYK"
     gene            complement(3782..4867)
                     /gene="hcxB"
                     /locus_tag="OQQ76_000529"
     CDS             complement(3782..4867)
                     /gene="hcxB"
                     /locus_tag="OQQ76_000529"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcXB"
                     /protein_id="HCS1967125.1"
                     /translation="MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAG
                     HDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGI
                     EKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRF
                     GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPA
                     VMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTII
                     INPELFGAPDCSAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGS
                     WQAICDAARQIGMSEETLQAFCQQLAS"
     gene            complement(5008..5970)
                     /gene="ybiB"
                     /locus_tag="OQQ76_000530"
     CDS             complement(5008..5970)
                     /gene="ybiB"
                     /locus_tag="OQQ76_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HCS1967126.1"
                     /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG
                     VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA
                     ILLHKLGFPVVVQGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA
                     FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDI
                     GGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQ
                     WIERCLAGSEPIPESLKIQMACCLEATGEAATISDGLARVNQAF"
     gene            complement(5998..8148)
                     /gene="dinG"
                     /locus_tag="OQQ76_000531"
     CDS             complement(5998..8148)
                     /gene="dinG"
                     /locus_tag="OQQ76_000531"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HCS1967127.1"
                     /translation="MALTAALKAQIAAGYKALQEQIPDFIPRAPQRQMIADVAKTLAG
                     EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK
                     IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK
                     GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE
                     VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL
                     DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH
                     RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA
                     LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
                     SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFE
                     PSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQSD
                     QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI
                     TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR
                     LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR"
     gene            8268..8750
                     /gene="ybiA"
                     /locus_tag="OQQ76_000532"
     CDS             8268..8750
                     /gene="ybiA"
                     /locus_tag="OQQ76_000532"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-glycosidase YbiA"
                     /protein_id="HCS1967128.1"
                     /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTW
                     PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRNRSKPLRKNWESVKEQVMRKALR
                     AKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK
                     "
     gene            complement(8982..10346)
                     /gene="rhlE"
                     /locus_tag="OQQ76_000533"
     CDS             complement(8982..10346)
                     /gene="rhlE"
                     /locus_tag="OQQ76_000533"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlE"
                     /protein_id="HCS1967129.1"
                     /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS
                     AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL
                     NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR
                     MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD
                     QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH
                     GNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG
                     RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ
                     QRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
                     AAAQ"
     gene            10575..11246
                     /gene="cecR"
                     /locus_tag="OQQ76_000534"
     CDS             10575..11246
                     /gene="cecR"
                     /locus_tag="OQQ76_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CecR"
                     /protein_id="HCS1967130.1"
                     /translation="MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNTTTREIAAQAGQN
                     IAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRA
                     CRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
                     NDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGL
                     SQRSL"
     gene            11249..12244
                     /gene="hlyD"
                     /locus_tag="OQQ76_000535"
     CDS             11249..12244
                     /gene="hlyD"
                     /locus_tag="OQQ76_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308900.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein HlyD"
                     /protein_id="HCS1967131.1"
                     /translation="MKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRTV
                     NLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLMLA
                     GYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT
                     LKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTRA
                     VEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQI
                     GFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGNEAGHE"
     gene            12237..13973
                     /locus_tag="OQQ76_000536"
     CDS             12237..13973
                     /locus_tag="OQQ76_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1967132.1"
                     /translation="MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGA
                     GKTTLMRMLAGLLKPDSGNATMIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLN
                     LYADLRSVTDEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL
                     LLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ
                     GEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPD
                     DIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKE
                     LTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMD
                     LKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGL
                     KSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE
                     KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQ
                     LIHDWDKEHSNE"
     gene            13966..15099
                     /locus_tag="OQQ76_000537"
     CDS             13966..15099
                     /locus_tag="OQQ76_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1967133.1"
                     /translation="MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG
                     YGINLDSSKLRVGILLEQRSEATLDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRG
                     LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT
                     FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS
                     TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL
                     GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV
                     STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD"
     gene            15110..16216
                     /locus_tag="OQQ76_000538"
     CDS             15110..16216
                     /locus_tag="OQQ76_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1967134.1"
                     /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE
                     VTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP
                     ADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELV
                     VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI
                     FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS
                     LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK
                     DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM"
     gene            complement(16178..16588)
                     /locus_tag="OQQ76_000539"
     CDS             complement(16178..16588)
                     /locus_tag="OQQ76_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhQ family protein"
                     /protein_id="HCS1967135.1"
                     /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL
                     CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL
                     AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR"
     gene            16754..17482
                     /locus_tag="OQQ76_000540"
     CDS             16754..17482
                     /locus_tag="OQQ76_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HCS1967136.1"
                     /translation="MLTINIQKGFTAFNRRFILPELRDAVRTVSADIVCLQEVMGAHE
                     VHPLHVENWPDTSHYEFLADTMWRDFAYGRNAVYPEGHHGNAVLSRYPIEHYENRDVS
                     VDGAEKRGVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEWVNELPDGEPVL
                     VAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLDRIYVKNASASA
                     PTALPLRTWRHLSDHAPLSAEIHL"
     gene            17479..18720
                     /gene="clsB"
                     /locus_tag="OQQ76_000541"
     CDS             17479..18720
                     /gene="clsB"
                     /locus_tag="OQQ76_000541"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HCS1967137.1"
                     /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE
                     DNVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNKLTAAGVVFRYYDPRPRLF
                     GMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDIL
                     QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQ
                     ARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK
                     GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD
                     NLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWHPAHTPRLTQVDP
                     PAQPTMETQDRVETENTGVKP"
     gene            18720..19676
                     /locus_tag="OQQ76_000542"
     CDS             18720..19676
                     /locus_tag="OQQ76_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
                     /protein_id="HCS1967138.1"
                     /translation="MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIR
                     DYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTW
                     VGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVA
                     QTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALTQMLISSVNWMV
                     MGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGS
                     IIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM"
     gene            complement(19712..20425)
                     /locus_tag="OQQ76_000543"
     CDS             complement(19712..20425)
                     /locus_tag="OQQ76_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HCS1967139.1"
                     /translation="MESYSQNSNKLDFQHETRILNGIWLITALGLVATAGLAWGAKYL
                     EITATKYDSPTMYVAIGLLLVCMYGLSKDINKINAVIAGVIYLFLLSLVAIVVASLVP
                     VYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERP
                     IWVISCLVIVLWPGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFG
                     ILAAIAITLVWQRHTRFFH"
     gene            complement(20631..21335)
                     /locus_tag="OQQ76_000544"
     CDS             complement(20631..21335)
                     /locus_tag="OQQ76_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HCS1967140.1"
                     /translation="MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN
                     SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS
                     IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW
                     LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD
                     FINLFLMLLRIFGNRR"
     gene            complement(21472..21924)
                     /gene="moaE"
                     /locus_tag="OQQ76_000545"
     CDS             complement(21472..21924)
                     /gene="moaE"
                     /locus_tag="OQQ76_000545"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HCS1967141.1"
                     /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG
                     DSVKALTLEHYPGMTEKALAEIVDEARNRWPLGRVTAIHRIGELWPGDEIVFVGVTSA
                     HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW"
     gene            complement(21926..22171)
                     /gene="moaD"
                     /locus_tag="OQQ76_000546"
     CDS             complement(21926..22171)
                     /gene="moaD"
                     /locus_tag="OQQ76_000546"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HCS1967142.1"
                     /translation="MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWAL
                     ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG"
     gene            complement(22164..22649)
                     /gene="moaC"
                     /locus_tag="OQQ76_000547"
     CDS             complement(22164..22649)
                     /gene="moaC"
                     /locus_tag="OQQ76_000547"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HCS1967143.1"
                     /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI
                     IDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL
                     CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD
                     D"
     gene            complement(22652..23164)
                     /gene="moaB"
                     /locus_tag="OQQ76_000548"
     CDS             complement(22652..23164)
                     /gene="moaB"
                     /locus_tag="OQQ76_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HCS1967144.1"
                     /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV
                     VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF
                     GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR
                     PCNFHPHLKK"
     gene            complement(23186..24175)
                     /gene="moaA"
                     /locus_tag="OQQ76_000549"
     CDS             complement(23186..24175)
                     /gene="moaA"
                     /locus_tag="OQQ76_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HCS1967145.1"
                     /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK
                     GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG
                     YRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK
                     VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL
                     RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLYLCLF
                     GEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG"
     regulatory      complement(24163..24307)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            24572..25480
                     /gene="yvcK"
                     /locus_tag="OQQ76_000550"
     CDS             24572..25480
                     /gene="yvcK"
                     /locus_tag="OQQ76_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HCS1967146.1"
                     /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN
                     GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK
                     ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP
                     IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV
                     YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL
                     EASDIPYRHDRQLLHNALEKALQALG"
     gene            complement(25672..27693)
                     /gene="uvrB"
                     /locus_tag="OQQ76_000551"
     CDS             complement(25672..27693)
                     /gene="uvrB"
                     /locus_tag="OQQ76_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HCS1967147.1"
                     /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG
                     KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV
                     PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
                     LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD
                     EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE
                     NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL
                     LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV
                     SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
                     VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE
                     GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG
                     ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP
                     MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS"
     gene            complement(28272..28949)
                     /gene="bioD"
                     /locus_tag="OQQ76_000552"
     CDS             complement(28272..28949)
                     /gene="bioD"
                     /locus_tag="OQQ76_000552"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706656.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1967148.1"
                     /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGS
                     EKTPEGLRNSDALALQHNSSLQLDYAIVNPYTFAEPTSPHIISAQEGRPIESLVMSAG
                     LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA
                     QAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
                     YINLALL"
     gene            complement(28942..29697)
                     /gene="bioC"
                     /locus_tag="OQQ76_000553"
     CDS             complement(28942..29697)
                     /gene="bioC"
                     /locus_tag="OQQ76_000553"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HCS1967149.1"
                     /translation="MATVNKQAIAAAFGRAAAHYEQHAELQRRSADVLLAMLPQRKYT
                     HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATA
                     TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERP
                     HANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRIL
                     TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE"
     gene            complement(29684..30838)
                     /gene="bioF"
                     /locus_tag="OQQ76_000554"
     CDS             complement(29684..30838)
                     /gene="bioF"
                     /locus_tag="OQQ76_000554"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCS1967150.1"
                     /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF
                     SSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRA
                     LLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLAR
                     LLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG
                     SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYNTSMPPAQAQAL
                     RASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL
                     AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG"
     gene            complement(30835..31875)
                     /gene="bioB"
                     /locus_tag="OQQ76_000555"
     CDS             complement(30835..31875)
                     /gene="bioB"
                     /locus_tag="OQQ76_000555"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HCS1967151.1"
                     /translation="MAHRPRWTLSQVAELFEKPLLDLLFEAQQVHRQHFDPRQVQVST
                     LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW
                     KNPNERDMPYLEQMVQGVKDLGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF
                     YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES
                     VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC
                     FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMT
                     PDTDEYYNAAAL"
     gene            31962..33251
                     /gene="bioA"
                     /locus_tag="OQQ76_000556"
     CDS             31962..33251
                     /gene="bioA"
                     /locus_tag="OQQ76_000556"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HCS1967152.1"
                     /translation="MTKDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRR
                     LIDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP
                     LECVFLADSGSVAVEVAMKMALQYWQAKGEVRQRFLTFRNGYHGDTFGAMSVCDPDNS
                     MHNLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMVAHRHEIAAVIIEPIVQGAG
                     GMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKAL
                     TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ
                     QVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRP
                     FGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ"
     gene            33310..33786
                     /locus_tag="OQQ76_000557"
     CDS             33310..33786
                     /locus_tag="OQQ76_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase inhibitor"
                     /protein_id="HCS1967153.1"
                     /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK
                     SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG
                     YDGAAPPKGETHRYIFTVHALDVEHIDVDEGASGAMVGFNVHFHSLASASITAMFS"
     gene            33938..35221
                     /locus_tag="OQQ76_000558"
     CDS             33938..35221
                     /locus_tag="OQQ76_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA thioester hydrolase"
                     /protein_id="HCS1967154.1"
                     /translation="MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPI
                     LSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD
                     AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
                     DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT
                     LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT
                     NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN
                     AFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD
                     DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK"
     gene            complement(35362..37599)
                     /locus_tag="OQQ76_000559"
     CDS             complement(35362..37599)
                     /locus_tag="OQQ76_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydratase"
                     /protein_id="HCS1967155.1"
                     /translation="MFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMD
                     KLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVF
                     GLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGE
                     LVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVG
                     PGVSALSTDFRNSVDVMITETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYY
                     DGCISVDLSAIKSMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLL
                     DKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDL
                     AKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQM
                     SAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGLVKGATQQ
                     PLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNQIGLAEF
                     TLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMV
                     YAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV
                     GDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFN
                     KNRQM"
BASE COUNT         8804 a        10178 c         9739 g         8885 t
ORIGIN      
        1 gggtgcgttt tttgcgggtg agaacggtaa ctccaccact ggcgacgcca tttatatgcg
       61 tggtgccgat acctctaaca gtatttatat tgatggcatt cgcgatatcg gcagcgtctc
      121 gcgcgacacc ttcaataccg agcaggtcga agtgattaaa gggccgtccg gcaccgacta
      181 cgggcacagc gcaccgacgg gctcaatcaa tatgatcagc aaacagccgc gcaatgattc
      241 cggcattgac gcctccgcca gtattggcag cgcctggttc cgccgcggca cgctggacgt
      301 caatcaggtc attggtgata ccaccgcggt gcgcctgaat gtaatgggcg aaaaaacgca
      361 cgatgccgga cgcgacaaag tcaaaaatga gcgttacggc gtcgcccctt ctgtcgcttt
      421 tggccttggt acagcgaatc gtttgtatct taattatctg catgtcaccc agcacaacac
      481 gccagacggc ggcattccga ccatcggttt gccgggctat tctgccccat ctgcgggaac
      541 ggcggccctg aatcattccg gaaaagttga tactcataac ttttacggca cggattccga
      601 ttacgacgat tcgaccaccg acaccgccac catgcgtttt gagcacgaca tcaacgataa
      661 caccaccatt cgcaatacta cccgttggtc gcgcgtaaag caggattacc tgatgacggc
      721 gattatgggc ggggcgtcga atattactca gcccaccagc gatgtgaata gctggacctg
      781 gtcacgcacg gcgaatacca aagatgtgag taataaaatt ctcaccaacc agaccaacct
      841 gacctcgacg ttctataccg gttctatcgg tcatgatgtc agtaccggcg tggaatttac
      901 ccgtgaaacg cagactaact acggcgttaa tccggtgacg ttacccgcgg taaatattta
      961 tcatcctgac agcagcattc atcccggcgg cctgacgcgc aacggcgcaa acgccaatgg
     1021 tcagacggat accttcgcaa tttacgcctt tgatacgctg caaatcaccc gtgattttga
     1081 gctgaacggc gggatccgtc tggataatta tcatactgaa tatgacagtg ccaccgcctg
     1141 cggcggcagc ggacgcggtg ccatcacctg cccagctggt gtggcaaaag gttctccggt
     1201 caccaccgtc gacaccgcca agtcgggcaa tctggtgaac tggaaagccg gggcgctgta
     1261 tcacctgacg gaaaacggta atgtctatat taactatgcc gtttcccagc agcctccggg
     1321 cggcaacaac ttcgcccttg cgcagtctgg cagcggtaac agtgccaacc gcaccgattt
     1381 taaaccgcaa aaagccaaca ccagcgagat tggcaccaaa tggcaggttc tggataaacg
     1441 cctgttgctc accgccgcac tgttccgtac tgatatcgaa aatgaagttg agcaaaatga
     1501 tgacggaact tactcgcaat acggtaagaa acgtgtcgaa ggctatgaga tatccgtggc
     1561 cgggaatatc actcccgcgt ggcaggtgat tggcggctat acccagcaaa aagcaaccat
     1621 caaaaacggc aaagatgttg cccaggatgg ttcctcatcg ctgccgtata ccccggagca
     1681 cgccttcacc ttatggagcc agtatcaggc aaccgatgat atctctgttg gcgcgggcgc
     1741 acgctatatc ggcagtatgc ataaaggttc agacggcgcg gtgggaacgc cagcgtttac
     1801 cgaaggttac tgggtcgccg atgccaaact ggggtatcgg gttaatcgca atctcgactt
     1861 ccagctaaac gtttacaacc tgtttgatac cgattacgtc gcctcaatca acaagagcgg
     1921 ctaccgttat cacccgggcg agccaagaac cttcttgctc acagccaata tgcatttctg
     1981 attcagatgt ggggcgcagg ccccactttt tggagaaatt gtatgatgta ccacattccc
     2041 ggcgtgttat cgccacagga cgtcgctcgt tttcgcgaac aactggaaca agccgaatgg
     2101 gtggatggac gcgtcaccac cggcgcacaa ggtgcgcaag ttaagaacaa tcaacaggta
     2161 gacacccgca gcacgttata cgccgccctg caaaatgagg tgctgaacgc ggttaaccaa
     2221 catgctttat tctttgccgc ggccttgccg cgtacccttt ccacgccgct gtttaatcgc
     2281 tatcagaaca atgaaaccta tggttttcat gtggatggcg cagtacgcag ccatccacaa
     2341 agcggctgga tgcgcactga cctttctgcc acgctgtttt taagcgatcc acaaagctac
     2401 gacggcggcg aactggtcgt taatgacacc ttcggacaac atcgggtaaa actcccggca
     2461 ggtgatctcg tgttgtatcc ctccagcagc ctgcattgcg tgacacccgt aacccgcggc
     2521 gtacgagtgg catcatttat gtggatccag tcgatgatcc gcgatgataa aaagcgcgcc
     2581 atgctgtttg aactagacaa aaatattcag tcgctgaaaa gccgctatgg tgaaaatgaa
     2641 gagatcctgt cgctgctcaa tctttatcat aatctgctgc gggaatggtc ggagatctga
     2701 cgcttgaact gcccaggttc gtccctatat tagctacact taactgtaca agcattgata
     2761 tggggaggac gatatggcat ccggtttggc taacgatgac gccgtcaacg aacagatcaa
     2821 cagtacaatt gaagatgcga ttgcccgcgc tcggggtgaa attccgcgtg gcgaaagcct
     2881 gtatgaatgt gaagagtgcg gtgcccccat cccgcaagcc cgtcgggaag ccattcctgg
     2941 cgtgcgctta tgtattcatt gtcagcagga gaaagattta caaaaaccag cgtatacagg
     3001 atataatcgc agaggttcga aagacagcca gttacgttaa ctacaactgg cgagatgcat
     3061 agcgagtata atttgtattt tgcgtggcat tccgtgcctt taacgctgct gtgactgcca
     3121 cgcggcataa aacaagtcca taagtacaac aaataaatgg tttatcagta tgttagatat
     3181 caatcaattt atttgaacaa ggcggtcaat tctcttcgat tttatctctc gaaaaaaaac
     3241 gtgatactca tcacatcgac gaaacaacgt cacttataca aaaatcacct gcgagagatt
     3301 aattatatac tgttgttgct gctatggctc tttcaactct atcatttggc gtgttcgcgg
     3361 cggaaccggt aacggcatcc caggcacaga acatgaataa aatcggcgtg gtttctgccg
     3421 atggcgcatc caccctcgat gccctggaag cgaaactggc tgagaaagcc gcggcagccg
     3481 gtgccagtgg atacagcatc acttctgcca ccaacaacaa taaattaagc ggtactgcgg
     3541 taatttataa gtaattcgta ggacagataa ggcgtttacg ccgcatccgg caacagatgc
     3601 ctgatgcgac gctaccgcgt cttatcaggc ctacaaaatc cgaaccgttg gacggatcag
     3661 gcggttacgc tacgtccagc acaagtattt ccctgtctgt ttgccgacag acgcatatgc
     3721 tctaaccctc attgatccta tattaccctt gtttgcccgt ccgttactgg acgggctttt
     3781 tttagctggc taactgctga cagaaagcct gtaacgtctc ttccgacata ccaatctgcc
     3841 gcgccgcatc acaaatggcc tgccagcttc ccgcatccaa tggaatcccc tgctcctgcc
     3901 gttcgcgacg cgtgttcact tcccactcgc ccggtagcaa aatcggctta tcgtcatcat
     3961 gcggcgaggc tttcacccac tcggcaaagg cttcagtctg cgcgctacaa tccggcgcgc
     4021 cgaacagttc cgggttgatg atgatagtgg tcatgcagtt aagaatggca tcgggactgg
     4081 tttgtaacgt ttcctgatgc gtcgttttac cgccagaaag cgccccgcca agaatttcac
     4141 acatcgctgc aagggcgtag cctttatgtt cggcaaaggt caacagcgac cccaacggcg
     4201 actcctgcat taccgccgga ttggtcgtcg gcacgccgtt aacgtcaatc aggcaacctg
     4261 gcggcacggg gacgccttta tgccaggcga cgcgagtttt accaaatgcg atggcgctgg
     4321 tggcgtaatc aagcaacagc gggaaattat ctttacgagg gaaaaccaca cagaacggat
     4381 tggtgccaaa gcggctgtcg cgaccgtgga acggtgcgac cattggaata ccgaccacgc
     4441 taacaaagtg gatagagaca aaccccgccg ctgcacactg ctccgcccag taaccgatac
     4501 ggccgatatg atgcgagtta tgtagcgcca cggcagcaat accgtgctga tgcgctttct
     4561 caatccccag cgccatcgct tcgtgtgccg cgacctgacc gaatgcgcga tcgccatcga
     4621 gcgtgactgc cgcccccgcc tctttaacga ttttggcatg atggttaatt tgcagatgcc
     4681 cctgactcca ggaacgcaca tagcttggga tcatgccaat accatgagaa tcatgccctg
     4741 ctaggtttgc cgcgattaaa tgatcggcca ctaatttcgc ttcttgttcc tcgctaccca
     4801 tctgacgaaa tacagcctga ataaaactgt gcagcgtctg agcatcaaag cgatgaccac
     4861 tttccatggt taactcctgt ttatgttatg tgtttgttgt ttttttatgc tgcacgccgg
     4921 gcgcgggaag gtcaataaag atgcaggaat ttcatattgc ggtggggtaa aagccggatg
     4981 acatggctca tccggctgag aaaagaatta aaatgcctga ttaacgcgcg ccaggccgtc
     5041 gctgatagtt gccgcttcac ccgtagcctc caggcagcaa gccatctgga ttttcagcga
     5101 ttcgggaatc ggttcgctgc cagcaaggca acgctcaatc cactgcgccg tggtttctgg
     5161 gtcttttgct tgtggcagta actcgctacc agcagtgtcc tgtttttcat acagcacccg
     5221 catcccttca cggtcaatga gattgatctg cgggcagcgc tgcggattag catacacttc
     5281 gccttcagta ccatgcatta gtagcgcccg cccgccgata tcgctaaaga acttcgcgac
     5341 tcgcccgatg tattccggat gcgaaacgct ggaaagacgc agcgcctcac cttcggcaaa
     5401 tggcgtcgcc agtttcgcca gggtatgtgc actgttacgc acgcccatcc gccagcgcat
     5461 cgccagttgt ttttccagcg gcgggcaaaa cgcgccgaca ggcataaaca ccggttgatg
     5521 ttcgtcgagc ttcgcctgcg cctgcccgcc gtgcaacgtt ggtgtaatac ccatcagttc
     5581 gaaaatggtt tctgtcagca cgcgagttgg atcttcgcta accccttgaa ccaccacagg
     5641 aaaaccgagt ttgtgcagga gaatagccaa caacggcgtc aggttggcct gtttacgcgc
     5701 gccgttgtaa ctggggatga caatcggcat cggcttgcct gcaggcggcg tcagcttgat
     5761 ggtgtgattt tgcatggctt cgtaaaagcc gagcatctct gcttcccctt cccctttgat
     5821 acgtagcgca atcaatacgc cgcccaactc aaggtcaggg acttcaccat tgagcatatg
     5881 ggcatacaga ccgcgcgcag tatcccggtc taaatcgcgc gcgtggtttt tcccgcgccc
     5941 gatctcttta atgattttgc gatagtccat ttacgactcc ttacctgact cacatcatta
     6001 acgccgccga cggcgtgggg atttcgtttt ttctttcttt ttaactatac cttcagggac
     6061 ttccggttgc tctatcggaa ataccggtaa tgcatccagt agtcgcttgc cataattttt
     6121 ggtcagcaag cgtttgtcgt agataaccac ttcgccccag caaccgtggc ttcgaatcag
     6181 tcgcccaacc tgctgaatca ggttaaacga ggcgctcggc aggctttgca cctcaaacgg
     6241 atagcggttg aggcttttca gccattcccc ttcggtgatc accaccgggc tgtcgatggg
     6301 cggaaaagcg attttgtgga tatgcacctg gctgagcaga tcacctttca aatcaagccc
     6361 ttcggcaaat gactgtaagc ccaccagcac actacgctca ccgttggcaa cgcgtttgcg
     6421 gtgcagttca actaagcgat aacgcggctg atcgctctgc accagcagca tcaggcgtaa
     6481 atccgtcaca tagtcgagaa agcgctgcat cgcccgtccg ctggcaaaca gtaccaacat
     6541 accgagatgt tttttgctct ccacctgctc acggaaaaag gccgccattt cggcaatatg
     6601 ctgctcttcg ttgtcgatgg aaggctcaaa gcgcatccgg ggaataacaa ttttgccctg
     6661 ttcgcagtgg ttaaaggggg aatccagcgc cacaaaacgg tcgcccgctt tctctttcag
     6721 cccgctcatc tcctgcaaac gcgaaaaact gttcagcgaa cgcaaggttg cggaggtgac
     6781 aataatgtgc ggaatactgc gccacagcag cctttccagc tgatcgctga cacgtattcc
     6841 cacgcagtga aaccagagat gcagctgccc ttcgcgctct tcccgcgtcg cccatttggt
     6901 caccggcgca ccggaagatt gcgccagaga cgccagccgc cagagtttgc tttgcgcctc
     6961 gaacatcccc aacgcgcggt tcatctgcaa aatcaaccga tgcagacgca caatatcgtg
     7021 gctgccggtt ttctcactta aatcgttaag aaataactcc gccagaccac gcagcatctc
     7081 ggtgagtttt gccagccgct ggcagatctc cagcacttca tcaggcagtt cgcccatcgc
     7141 aaaacggtgc tctgcctcct gcccggcagg catgtagaga ttgagaatgt tgtttaacga
     7201 ggcgataagc tcatacaact cttcacaatg cgcattcaaa cgttcaggga tcgccagcgg
     7261 tgggatggtc ttcgggcgaa actgctccat gcaggtagcg accagtttcg tgaacaagtc
     7321 cagctgtagt cgataccagg gcgcggtgat ttcagcgctc atctccagcg catcccgggc
     7381 cacatctggc aggtgatgac cttcgtccag caccagcagc agatttttcg ggtcaggcag
     7441 tacggcttcg ctttccatcg ccgccatcac cagcgcatgg tttgccacca ccacttccgc
     7501 ttcctgaatc tcccgacgag caacaaaaaa cgggcattca cgatagtagt aacagttacg
     7561 gttgaggcag ctggctttgt cggtactcaa acgacgccag agatcatcat ctatagcgat
     7621 atccgtatga tcgcgcagac catcccattt ataagtgtcg agatcgccct tcagcttcgc
     7681 acaacgtttt tgctcttcct gattatttgg cgtcagttcg tcgtcaagaa acgccagcag
     7741 atcctgttgc gtgggttcag tgctggcgag cgccgtcaga ttacgcggac aaacgtagcg
     7801 cccacgcccg aaagcggcag tgaatttaag atcgggaatg atctttttca gcagcggtaa
     7861 atctttgctg taaatctgat cctgcaacgc cacgttggcg gtactcacca ccagcgtttt
     7921 ttgctcttcg cgggcaatgg cgatgccggg gatcaaatag gagagcgttt tcccaacgcc
     7981 ggtgggggct tcaatcgcca gatgccgccc ttcttctccg gccagcgttt tggcgacgtc
     8041 cgcaatcatc tgccgctgcg gcgcacgggg aataaagtcg gggatctgtt cctgaagcgc
     8101 cttatacccg gcggcaattt gcgctttaag cgcggcggtt aatgccatga gaaaacctga
     8161 aatactgtat aaacagccaa tattgtggca tttttcggtt ttcaggggta atggtttttc
     8221 tgtttctgga aagcggctcg caataaccac caacataatg cggtttaatg cccgttcgag
     8281 cacaaaggat ccaacacgtc atgcaagaca ccatcataaa tttctacagc accagcgatg
     8341 actacggtga tttttctaac tttgccgcct ggcccatcaa ggttgacggg aaaacctggc
     8401 ccacctccga acactatttt caggcacaaa aattccttga tgaaaaatac cgcgaagaga
     8461 tccgtcgggt ttcttccccc atggtcgccg ctcgcatggg gcgtaatcgt tccaagccac
     8521 ttcgtaaaaa ctgggagtcg gttaaagaac aggtgatgcg taaagcactt cgtgctaaat
     8581 tcgaacagca tgcagaactg cgtgcgctct tgctggcaac cgcgcccgca aaactggttg
     8641 agcatacgga aaacgatgct tactggggag acggtggtaa tggtaagggc aagaatcgac
     8701 tgggctacct tttaatggag ttgcgcgaac aattggctat agagaagtaa cgtctcggtg
     8761 gcttatgggc ggtaaaacag ataaattttt tcccgtgttc tcaaattgct gacaagtgct
     8821 tgttgtgaaa tgccggatgc ggcgtaaacg ccttatccgg cctacaaaag catgcaaatt
     8881 caatatattg cagagttaac gtaggcctga taagcgtagc gcatcaggca gttttgcgtt
     8941 tgttcatcag cctgatgccg ggcatagccc ggcataaaag attactgcgc agcggcaggt
     9001 ttacgcggac ggcggcgacg ttgttgttcg cctgccggtt tggcatcgcc gaggcggcga
     9061 gacggttttt ctgcaggttt cgcgcttgca gattttgcgc caccttcccc acggcgtggt
     9121 tgctgttgac cgcgaccacc accttgccca cgaccgccgc cgccacgttg ctggcgaccg
     9181 ttctggatcg gttcggcttt gattgacggg tccggctcat agcccggaat cgcaatgcgc
     9241 gggatctctt ttttcagcag tttttcgata tcacgcagca gtttgtgttc atcaacacac
     9301 accagcgaca acgcttcacc ggtagcagcc gcacgaccgg tacgcccgat acggtggaca
     9361 taatcttccg gtacgtttgg cagttcatag ttgacgacgt gcggcaactc ttcgatatcc
     9421 agaccgcgcg cagcgatatc ggtcgccacc agtacgcgaa tgtcactcga tttaaaatca
     9481 gccagcgcac gggtacgcgc accttgcgat ttattcccgt ggatcgccgc actacggatg
     9541 ccatctttat tgagctgctc agccagatgg ttagcgccgt gtttggtacg ggtaaacacc
     9601 agcacctgct gccagttccc tttaccaatc atgtgcgaca gcaattcgcg tttgcgtttc
     9661 ttatcgacaa agtgaacgtg ctgggtcacc tgatcagacg cggtattgcg gcgtgccact
     9721 tcgatttcca gcgggttgtg caacagtttt tccgccaggg ctttaatatc gtcagagaag
     9781 gtcgcagaga acagcaggtt ctggcgtttc gctggcagtt ttgttaacac gcgacggata
     9841 tcgtggataa agcccatgtc gagcatgcgg tcagcttcat cgaggacgag gatttcaacc
     9901 tgatccagct tcactgcatt ttgatgttcc aggtccagca aacgtcccgg tgttgccacc
     9961 agaacatcaa cgccgccgcg cagcttcatc atttgcgggt taatgctgac accgccaaac
    10021 accaccagcg aacgaatgtt caaatatttg ctgtaatcac ggacgttttc gccaatctgc
    10081 gcagccagtt cacgggtcgg ggtaagaatg agcgcacgta ccggacgacg ccctttggcg
    10141 tgcggctggc gagtgatcag gtgttgcaac agcggcagcg taaagcccgc tgttttaccg
    10201 gtaccggtct gggcgctagc catcaggtcg cggccttcca gcaccgcagg gatcgcctgc
    10261 tgctgaatag gggtgggttc acggtaaccc tgctcggcaa cggcgcgcag gatatcaggg
    10321 cttaaaccca aagaatcgaa agacataact actccgaacc gccccgaccg ttaccggtgt
    10381 agttttcagg gagatactga aaaggaaaat gacaaaaacc acaatgtcat gagggagcgg
    10441 agtgtagcag tttttgtgac gcagcgcata aattatccct gtgactggcg ttgctaaaat
    10501 tcttagccat actggacaac tcccctatgg agtcataatc ttaatcaatc atttgattaa
    10561 gaatggactg tgcgatgaat aatcctgcca tgacaatcaa gggtgaacag gcgaaaaaac
    10621 agctgattgc tgccgcactg gcgcagtttg gtgaatatgg aatgaacacc accactcgcg
    10681 agatagccgc ccaggccggg cagaatatcg ctgccatcac ctactacttc ggttcgaaag
    10741 aagatttgta cctcgcctgc gcccagtgga ttgccgattt tattggcgag cagttccgtc
    10801 cgcatgccga ggaagccgaa cgcttgttcg cgcaaccaca gcctgatcgg gctgccatcc
    10861 gtgaactgat ccttcgcgcc tgcaggaaca tgattaagct gctcacccag gatgacaccg
    10921 tcaacctcag caagtttatc tcccgtgagc agctctctcc cacggcagcc taccacctgg
    10981 tgcacgaaca ggtgattagt ccgctacaca gccacctgac acgcctgatt gccgcctgga
    11041 ccggctgcga cgccaatgac acccgcatga tccttcatac ccatgcgttg attggtgaga
    11101 ttctggcgtt ccgtcttggc aaagaaacaa ttctgttacg taccggctgg accgcgttcg
    11161 atgaagaaaa gaccgaactg atcaaccaga cggtgacctg tcatatcgac ctgattttgc
    11221 aaggattatc gcaaaggagt ttgtagtgat gaaaaaacct gtcgtgatcg gactggcggt
    11281 agtggtactt gccgccgtgg ttgccggagg ctactggtgg tatcaaagcc gccaggataa
    11341 cggcctgaag ctgtatggca acgtggatat tcgtacggtg aatcttagtt tccgtgttgg
    11401 ggggcgcgtt gaatcgctgg cggtggacga aggtgatgcg atcaaagcgg gccaggtgct
    11461 gggcgaactg gatcacaagc cgtatgagat tgccctgatg caggtgaaag cgggcgtctc
    11521 ggtggcacag gcgcagtatg acctgatgct tgccgggtat cgcgatgaag aaatcgctca
    11581 ggccgccgca gcggtgaaac aggcgcaagc cgcctatgac tatgcgcaga acttctataa
    11641 ccgccagcaa ggactgtgga aaagccgcac catttcggca aatgacctgg aaaatgcccg
    11701 ctcctcgcgc gaccaggcac aggcaacgct gaaatcagca caggataaat tgcgtcagta
    11761 ccgttccggt aaccgtgaac aggacatcgc tcaggcgaaa gccagcctcg aacaggcgca
    11821 ggcgcaactg gcgcaggcgg agctgaattt acaggactca acgttgatag caccgtctga
    11881 tggcacactg ttaacgcgcg cggtggagcc aggcacggtt ctcaatgaag gtggcacggt
    11941 gtttaccgtt tcactaacgc gtccggtgtg ggtgcgcgct tatgttgatg aacggaatct
    12001 tgaccaggcc cagccggggc gcaaagtgct gctttatacc gatggtcgcc cggacaagcc
    12061 gtatcacggg cagattggtt tcgtttcgcc gactgctgaa tttaccccga aaaccgtcga
    12121 aacaccggat ctgcgtaccg acctcgtcta tcgcctgcgt attgtggtga ccgacgccga
    12181 tgatgcgtta cgccagggaa tgccggtgac ggtgcaattc ggtaacgagg caggacatga
    12241 atgatgccgt tatcacgctg aacggcctgg aaaaacgctt tccgggcatg gacaagcccg
    12301 ccgtcgcgcc gctcgattgt accattcacg ccggttatgt gacggggctg gtggggccgg
    12361 atggtgcagg taaaaccacg ctaatgcgga tgctggcggg attactgaaa cccgacagcg
    12421 gcaatgccac gatgattggc tttgatccaa tcaaaaacga cggcgcgctg cacgccgtgc
    12481 tcggctatat gccgcagaaa tttggtctgt atgaagatct cacggtgatg gagaacctca
    12541 atctgtacgc ggatttgcgc agcgtcaccg acgaggcacg taagcaaact tttgctcgcc
    12601 tgctggagtt tacgtctctt gggccgttta ccggacgcct ggcgggcaag ctctccggtg
    12661 ggatgaaaca aaaactcggt ctggcctgta ccctggtggg cgaaccgaaa gtgttgctgc
    12721 tcgatgaacc cggcgtcggc gttgacccta tctcacggcg cgaactgtgg cagatggtgc
    12781 atgagctggc aggcgaaggg atgttaatcc tctggagtac ctcgtatctc gacgaagccg
    12841 agcagtgccg tgacgtgtta ctgatgaatg aaggcgagtt gctgtatcag ggggaaccaa
    12901 aagccctgac acaaaccatg gccggacgca gctttctgat gaccagtcca cacgagggca
    12961 accgcaaact gttgcaacgc gccttgaaac tgccacaggt cagcgacggc atgattcagg
    13021 ggaaatcggt acgtctgatc ctcaaaaaag aggccacacc agacgatatt cgccatgccg
    13081 acgggatgcc ggaaatcaac atcaacgaaa ctacgccgcg ttttgaagat gcatttattg
    13141 atttgctggg tggtgccgga acctcagaat cgccgctggg tgcaatattg catacggtag
    13201 aaggcacacc cggcgagacg gtgatcgaag cgaaagaact gaccaagaaa tttggtgatt
    13261 ttgccgccac cgatcacgtc aactttgccg ttaaacgtgg ggagattttt ggtttgctgg
    13321 ggccaaacgg cgcgggtaaa tcgaccacct ttaagatgat gtgcggtttg ctggtgccga
    13381 cttccggcca ggcgctggtg ctggggatgg atctgaaaga gagttccggt aaagcgcgcc
    13441 agcatctcgg ctatatggcg caaaaatttt cgctctacgg caacctgacg gtcgaacaga
    13501 atttacgctt tttctctggt gtgtatggct tacgcggtcg ggcgcagaac gaaaaaatct
    13561 cccgtatgag cgaggcattt ggcctgaaaa gtatcgcctc ccacgcgacc gatgaactgc
    13621 cattaggttt taaacagcgg ctggcgctgg cctgttcgct gatgcatgaa ccggacattc
    13681 tgtttctcga cgaaccaacg tccggcgttg atcccctcac ccgccgcgaa ttttggctgc
    13741 atatcaacag catggtagag aaaggcgtca cggtgatggt caccactcac tttatggatg
    13801 aagcagaata ttgcgaccgc atcggcctgg tgtaccgtgg gaaattaatt gccagcggca
    13861 cgccggatga tttgaaagcg cagtcggcca acgacgagca acccgatccc accatggagc
    13921 aagcctttat tcagttgatc cacgactggg ataaggagca tagcaatgag taacccgatc
    13981 ctgtcctggc gtcgcgtacg ggcgctgtgc gttaaagaga cgcggcagat cgttcgcgat
    14041 ccgagtagct ggctgattgc ggtagtgatc ccgctgctac tgctgtttat ttttggttac
    14101 ggcattaacc tcgactccag caagctgcgg gtcgggattt tactggaaca gcgtagcgaa
    14161 gcgacgctgg atttcaccca caccatgacc ggttcgccct acatcgacgc caccatcagc
    14221 gataaccgtc aggaactgat cgccaaaatg caggcgggga aaattcgcgg tctggtggtt
    14281 attccggtgg attttgcgga acagatggag cgcgccaacg ccaccgcacc gattcaggtg
    14341 atcaccgacg gcagtgagcc gaataccgct aactttgtac aggggtatgt cgaagggatc
    14401 tggcagatct ggcaaatgca gcgagcggag gacaacgggc agacttttga accgcttatt
    14461 gatgtacaaa cccgctactg gtttaacccg gcggcgatta gccagcactt cattatcccc
    14521 ggtgcggtga ccattatcat gacggtcatc ggcgcgattc tcacctcgct ggtggtggcg
    14581 cgagaatggg aacgcggcac catggaggct ctgctctcta cggagattac ccgcacggaa
    14641 ctgctgctgt gtaagctgat cccttattac tttctcggga tgctggcgat gttgctgtgt
    14701 atgctggtgt cagtgtttat tctcggcgtg ccgtatcgcg ggtcgctgct gattctgttt
    14761 tttatctcca gcctgttttt actcagtacc ctggggatgg ggctgctgat ttccacgatt
    14821 acccgcaacc agttcaatgc cgctcaggtc gccctgaacg ccgcttttct gccgtcgatt
    14881 atgctttccg gctttatttt tcagatcgac agtatgcccg cggtgatccg cgcggtgacg
    14941 tacattattc ccgctcgtta tttcgtcagc accctgcaaa gcctgttcct cgccgggaat
    15001 attccagtgg tgctggtggt aaacgtgctg tttttgatcg cttcggcggt gatgtttatc
    15061 ggcctgacgt ggctgaaaac caaacgtcgg ctggattagg gagaagagca tgtttcatcg
    15121 cttatggacg ttaatccgca aagagttgca gtcgctgctg cgcgaaccgc aaacccgcgc
    15181 gattctgatt ttacctgtgc ttattcaggt gattctgttc ccgttcgccg ccacgctgga
    15241 agtgactaac gccaccatcg ccatctacga tgaagataac ggcgagcatt cggtggagct
    15301 gacccaacgt tttgcccgcg ccagcgcctt tactcatgtg ctgctgctga aaagcccaca
    15361 ggagatccgc ccaaccatcg acacacaaaa ggcgttactc ctggtgcgtt tcccggctga
    15421 cttctcgcgc aaactggata ccttccagac cgcgccgttg cagttgatcc tcgacgggcg
    15481 taactccaac agtgcgcaaa ttgccgccaa ctacctgcaa cagatcgtca aaaattatca
    15541 gcaggagctg ctggaaggaa aaccgaaacc taacaacagc gagctggtgg tacgcaactg
    15601 gtataacccg aatctcgact acaaatggtt tgtggtgccg tcactgatcg ccatgatcac
    15661 cactatcggc gtaatgatcg tcacttcact ttccgtcgcc cgcgaacgtg aacaaggtac
    15721 gctcgatcag ctactggttt cgccgctcac cacctggcag atcttcatcg gcaaagccgt
    15781 accggcgtta attgtcgcca ccttccaggc caccattgtg ctggcgattg gtatctgggc
    15841 gtatcaaatc cccttcgccg gatcgctggc gctgttctac tttacgatgg tgatttacgg
    15901 tttatcgctg gtgggattcg gtctgttgat ttcatcactc tgctcgacac aacagcaggc
    15961 gtttatcggc gtgtttgtct ttatgatgcc cgccattctc ctttccggtt acgtttcgcc
    16021 ggtggaaaac atgccagtat ggctgcaaaa cctgacgtgg attaacccta ttcgccactt
    16081 tacggacatt accaagcaga tttatttgaa ggatgcgagt ctggatattg tgtggaatag
    16141 tttgtggccg ctactggtga taacggccac gacagggtca gcggcgtacg cgatgtttag
    16201 acgtaaggtg atgtaacttc ttatctttcg ccagcaaaga cactaccgcc gggccggcaa
    16261 ggattgccag ccctgcaatt gccagcaaaa agttgttttc cagtacgcgg gacaacagcc
    16321 acagcacaat cagcgctgcg ccaaaatacc aggtcgtggt cagctcttcc agcacgtctg
    16381 ccacctcacg ccagcgttgc tcggggtggc gctgaaacac caacatcatc actaccgtga
    16441 cacaatacag tgcgcataat cccacgccga cgtgaaccag agtcttactc atccagccca
    16501 ccaccagcag cgccactacc agtaaatgca acataatctg ccagcaactt agacccgttg
    16561 cgacacgaac acgttgttgc cacttcatgg cttctctcct gaagaattta tctctactta
    16621 ctcagagtac cgaactttac ggaaaattcc gtaagaccgc acctttttgt gacgccgact
    16681 acactatttc aatgagataa gaggcaaaga caggaaaatt atgcccgatc aaacataaca
    16741 attttcgttc aaggtgctca ccatcaacat tcaaaaaggt tttaccgcgt ttaaccgacg
    16801 cttcattttg ccggaacttc gcgacgcggt gcgtaccgtc agcgccgata ttgtttgcct
    16861 gcaggaagtg atgggcgcgc acgaagttca tccgctgcat gtggaaaact ggcccgatac
    16921 ctcgcactac gagtttctcg ccgacactat gtggcgcgat tttgcctacg gtcgcaatgc
    16981 cgtatacccg gaagggcatc acggcaacgc cgtactgtcg cgttatccca ttgaacatta
    17041 tgagaatcgc gatgtttcgg tcgatggtgc ggaaaagcgc ggcgtgctct actgccgcat
    17101 tgtgccgccg atgaccggaa aagcgattca tgtgatgtgc gtacatctgg gcctgcgtga
    17161 ggcgcaccgt caggcgcagc ttgcgatgct cgccgaatgg gtgaatgagc taccggacgg
    17221 cgaaccggta ttggtggcgg gtgatttcaa tgactggcgg caaaaagcta atcatccgtt
    17281 aaaagtgcag gccggactgg atgagatttt tacccgcgcc cacggacgcc cagcgcgcac
    17341 gtttccggtg caatttcctc tactacgact ggacaggatc tacgtcaaaa atgccagcgc
    17401 cagcgcgcca accgcgttgc cgctgcggac atggcgacac ctttctgatc atgccccttt
    17461 aagtgcggag attcatttat gaaatgtagc tggcgcgaag gcaataagat ccagttgctg
    17521 gaaaacggcg agcaatatta tcccgcggtg tttaaggcga ttggcgaggc acaagaacgc
    17581 atcattcttg aaacgtttat ctggtttgag gataacgtcg gcaaacagct acatgcggca
    17641 ctactggcag cagcgcaacg cggggttaaa gcggaagtct tgctggatgg ctacggttcg
    17701 ccggatctca gcgatgagtt tgtcaataaa ctgacggcag ctggcgtagt gttccgctac
    17761 tacgatcccc gccctcgcct ttttggtatg cgcaccaatg tgtttcgccg gatgcatcgc
    17821 aaaattgtgg tgatcgacgc gcgtatcgcc tttattggcg ggctgaatta ctccgccgag
    17881 catatgtcca gctacggtcc agaggctaaa caggattacg cggtacgcct tgaagggccg
    17941 attgtcgaag atattctcca gtttgagctg gaaaacctgc ctggacagag cgcggcacgg
    18001 cgctggtggc gacgtcatca caaagcggaa gagaaccgcc agccgggaga agcgcaggta
    18061 ttgctggtct ggcgcgataa cgaagaacat cgcgatgata ttgaacgcca ttatctgaaa
    18121 atgctcactc aggcgcggcg ggaagtgatt atcgccaacg cctacttctt ccccggctat
    18181 cgatttttac acgccttgcg taaagcggca cggcgcgggg tgcggatcaa actgatcatt
    18241 cagggcgaac cggatatgcc gattgtcaga gtcggtgcgc gcttgctgta taactatctg
    18301 gttaaaggcg gcgttcaggt ttttgagtac cgccgccgcc cgctccacgg caaagtggca
    18361 ttgatggacg atcactgggc gacagtaggg tccagtaatc tcgatccgct cagtttgtca
    18421 ctgaatctcg aagcaaatgt catcatccac gatcgtcatt ttaaccagac gctgcgcgat
    18481 aatctgaacg gcattattgc cgcagattgt cagcaggtgg atgaaaccat gctgcccaaa
    18541 cgcacctggt ggaacctgac caaaagcgtg ctggcgttcc actttttacg ccacttcccg
    18601 gcgctggttg gctggcatcc ggcacacaca ccacgtctga cgcaggttga tccccccgca
    18661 caaccgacaa tggaaacgca ggatcgggta gaaactgaaa acacgggggt aaaaccctga
    18721 tgagtaaatc acacccgcgc tggcgcttag caaagaagat cctcacctgg ctgtttttta
    18781 tcgcggtgat tgtgttgctg gtggtctacg ccaaaaaagt ggactgggaa gaggtctgga
    18841 aggtcatccg cgactacaat cgcgttgcgc tgcttagtgc ggtcgggctg gtggtcgtca
    18901 gctatctgat ttacggctgc tatgacctgc tcgcccgctt ttactgcggt cacaaactgg
    18961 cgaagcgcca ggtgatgctg gtgtcgttta tctgctacgc cttcaacctg acgctcagta
    19021 cctgggtcgg cggcattggt atgcgctatc gtttgtactc ccgactaggg ttaccgggca
    19081 gcactattac gcggattttc tcgctcagta ttaccaccaa ctggctgggc tatattttac
    19141 tggcagggat tatctttacc gcaggcgtgg tggagttgcc ggatcactgg tatgtcgctc
    19201 aaactacgct gcgtattctc ggcattggct tactgatgat tatcgcggtt tatttgtggt
    19261 tttgcgcttt cgcgaagcac cgccatatga ccatcaaagg gcaaaagctg gtgctgcctt
    19321 catggaaatt cgccctcact cagatgctga tttccagcgt taactggatg gtaatggggg
    19381 cgattatctg gctgttactt ggtcaaagcg tgaactattt ctttgtactg ggcgtgttac
    19441 tggttagtag tattgctggc gtcatcgtgc atattccggc ggggatcggt gtgctggaag
    19501 cggtgtttat cgcactactg gctggggagc atacctcgaa agggagcatt atcgccgcgc
    19561 tgctcgctta tcgcgtcctg tattacttta tcccgctgct gctggcgctg atctgttacc
    19621 tgctactgga aagccaggcg aagaagctac gggcgaaaaa tgaagcggcg atgtgaagtt
    19681 tagttaagtt ctttagtatc tgcattcacg actaatgaaa aaaacgcgta tgcctttgcc
    19741 agacaagcgt tatagctatc gcggcaagta tcccaaagaa gccgataaaa tagtaataga
    19801 gtgttaatgc acctgtaaaa gcgcaacgaa ccggactcca caactcttca ctatggcatt
    19861 ttcctgccag ttcaaggagc ttatttcgtc catgcgagat aatgcctggc cataacacaa
    19921 tcactaagca acttattacc caaatgggcc gttcactcat taatgccgca ttcacgatga
    19981 ttaccagggc caaccctgtc aacgtcatca taatgataaa acggtgagaa ccaggatcaa
    20041 cattaaataa taaaccggcc agcatactga ttaaaaacat cgcgcccgca gtgctgaaca
    20101 caatgataat ggcatataca ggaactaaac ttgcaacgac aatcgccacc aaagagagta
    20161 aaaacagata tattacgcct gcgatgacgg catttatctt gttgatatcc ttacttaagc
    20221 catacataca aactaataat aaccctatgg cgacatacat tgttggtgaa tcatatttgg
    20281 ttgccgtaat ttcgagatac ttagctcccc aggccagtcc tgcggttgcc accaaaccta
    20341 aagcggtaat gagccatata ccgtttaata tcctggtctc gtgctgaaaa tctaatttat
    20401 tgctgttttg tgagtatgat tccattcttt tagttgtcct tagaaaaaat attaatattc
    20461 accatcaata aatttaaacc cacgcataca aaatactttt gtatttatgg atacggaaaa
    20521 cgcttccgct cggccataag gcgtatttta tacctggtac ttgttaagtg tcgtttttag
    20581 taagaaaaga aatcccgaca catggccggg atattgatgg tgaaaaagaa ttaacggcgg
    20641 ttgccaaaaa ttcgcagcaa catcaggaac aggttgatga agtccagata caaggttaac
    20701 gcgccaagaa tggaatattt gcgcaggttc gacgtgtcgc gggtatcaat ctgctcaccc
    20761 atatttttca atttctgagt gtcatacgcc gtcaatccga caaagacaat cacgccgatg
    20821 taggtaactg cccacatcaa tgcttcgctt ttcagccaga agttgaccag cgatgccagc
    20881 acaatgccga ttaacgccat aaacagcata ttgccaaagc cacttaaatc gcgcttcgtg
    20941 gtgtaaccgt acaggctcat tgcgccgaac atcccggcag taacgacgaa agtactggcg
    21001 atagaagcag cggtatagac aatgaatata ctggaaagcg taagacccgt cagcgccgaa
    21061 taaagcataa agagcatcgt cgttacacct gcgctcagct tttgaatcat cgctgataac
    21121 acaataacca atgctaattg cgcgatgatc agaccgatta aaaagacacg gttagtgaac
    21181 aacagctcca tcacggccgc ggaattagcc gcataccagg caacaaatgc ggtcagcaac
    21241 aagccaacgg tcatccagcc atagacttgc gccatataag tttgcaagcc agcccggggt
    21301 tgtacgattg aatcagaacg tgggaatctg tccatgacga tctcctgaag atataaggaa
    21361 tatcttaagg atactgcaaa atgatgaggc tgtgcatcga cgcagcgtaa acgcatgtac
    21421 tgagcggtga aattgccgga cgcagcggtg ccttatccgg ctaacaaaaa actaccagcg
    21481 ttttgccgcc tgctgatcgc tctcccgagc ttcaacccag cggtcgcctt ccggcgtggc
    21541 ttcgcgcttc cagaacggtg cgcgggtttt gagataatcc ataataaact gcccggcttc
    21601 aaacgcactg ctgcgatgcg cactggtgac accgacaaaa acgatttcat cgcccggcca
    21661 taattccccg atgcggtgaa tcgcagtgac gcgccccagc ggccagcggt tacgcgcttc
    21721 atcaacaatt tctgccagtg ctttttcagt catccccgga tagtgttcga gggttaatgc
    21781 tttgacgctg tcgcccaggt tatggttgcg caccttacca gtaaaggtga ctaccgcacc
    21841 gtcttcgtca cgctccgcca gccacgggta ctcttctcct acgctgaacg gctgcggacc
    21901 aacaacaatt ttggtttctg ccatcttaac ctccggttac cggcgggaag aaagctactt
    21961 cgtcgccgtc agtcagcgga tggtcaaaac tcaccagcgt ctggttgacg gcagccagta
    22021 atttgccatc ttccagcgcc agcgcccagc gatcgctctg cgcagccatg tgctggcgta
    22081 acgcttcaac agttgggaaa tccgcagcca cttcggttgc atctgttccc accaactcgc
    22141 gcacctgcgc gaaaaaaaga actttaatca tccgcttcca ccttaaagtc acccgacttg
    22201 ccgccgctct tcgccagcaa acgtaccgga ccaatcacca tatctttttg caccgctttg
    22261 cacatgtcat aaatggtcag cgccgccacg gaggccgcgg ttaatgcttc catttcgaca
    22321 ccggttttcc cggtcaggcg gcataaggtt tctatacgca cccgattgtg ctccggctcg
    22381 gcctgtaaat tgacttcaac tttgctgagc atcagcggat gacagagcgg gatcagatcc
    22441 caggtgcgtt ttgccgcctg aataccggca atacgcgcag tggcaaatac gtcgcctttg
    22501 tggtggcgac catcaataat catcgccagc gtctcgctgc gcatggtgac aaaggcttcc
    22561 gcccgcgctt cacgcacggt ttccgctttg gcggagacat ccaccatgtg cgcttcgcca
    22621 gcggcgttga tatgggtcag ttgcgacata cttatttctt caaatgtgga tggaaattac
    22681 acggacgcgt acgggcatcc agctgcggcg cgatgatatt ttcccatgcg gtacggcacg
    22741 ctttggtcga acccggcatg gcgaaaatca gcgttttgtt ggcgacgccc gctaccgcac
    22801 gagattgcaa cgtggaagtg ccaatctctt caaacgacaa catccggaac acttcaccaa
    22861 aaccttcaac ttcacggtcg aacaacggca gcaatgcttc gggagcctga tcaccttccg
    22921 tcaggccagt accacccgta atcaatacca cttgtacatc gtcgctggcg atccacgcag
    22981 atacctgagc gcgaatagcg tagcggtttt ctttcacaat ggctttatcg acaacgtgat
    23041 ggcccgcttc ttgcgccgaa tcgcgcagat agtgaccgga ggtatcgtct tcttcaccgc
    23101 gacgattaga aaccgtaaga atagcaatac gggtcgggat aaattcagtg cttacctgac
    23161 tcatctgatc tctccttttg acgttttagc cgccaatgta cgataagttt tgcgtaatac
    23221 cggtgttgtt ttgatgcagg aaatgggtct gtttcttctc ccgcagcgcc gctgaaatac
    23281 gcgcttccag cgcctgttgc tgggtatcgt cttccagcag atcgcgcagg ttaacgccgc
    23341 cttcaccaaa caggcagaga tagagtttac caatggagga aacgcgcagg cggttgcaag
    23401 tggcgcagaa gtctttttca tacggcatga taaggccaat ctctccggcg taatctggat
    23461 ggcaaaagac ttgcgcggga ccgtcgctgc gttgacgtaa ttggtggatc cagccgcgac
    23521 gcagtagctc gtcacgcaga acctgaccag agatgtgatg cttacggaag agctcgctgc
    23581 cctcgcccgt ttccatcagt tcgatgaaac gcagctggat agggcgatgc tggatccagt
    23641 tcagaaaggt gtcgagctgg tgatgattaa catcacgcat cagcacggta ttgactttga
    23701 ccttctcaaa accggcctca aatgcagcat caatccctgc catgacctgg ttgaatttat
    23761 cctgcccggt aatagcgtga aactggcggg cgtccagact gtcgacactg acgttaatgc
    23821 cagtaagtcc cgcatcgcgc cagttcgcca catcgcgttc cagacggtaa ccattggtgg
    23881 tgaccgcaat ctggcggata gcgtcgtttt cccgcacagc ggcgatgata tcggtaaagt
    23941 cgcggcgtaa agacggctca cctcctgtca ggcgcacttt ttcggtgccc agactggcga
    24001 aggcgcgcgt aacccggcga atttcatcga cggtaagaaa gcctttattg gtgacgccgc
    24061 tcggtttgta gccatccggc aggcagtagg tgcaacgaaa gttacacaca tcggtaatcg
    24121 acaggcgcaa gtagtaaaac ttacgcgcaa atgcatcagt cagttgtgaa gccatgtaca
    24181 cctttccaga tacgggaggc gaagtcattt cttccttcgc cctggtggca atctttacga
    24241 gcattgtcac ggccaaagca ccgtatcagt tgacctaggt gcagaggcta gagtgtttag
    24301 tggttaagcc gatactagcg tgtaaatggg atttttacca tccacacttt cgctatgcaa
    24361 tcatgtatat agcgttatga tcgtgctatt tcgctacaga ataagggaaa atggcagttt
    24421 tactttgata tacatcatca gggaggcata gcgtgcatcg tcctttagag gtagaagaaa
    24481 atagtttgta tcctcaatat tggcaggtta attgctgttt ccccgcaatt tgcgctactg
    24541 tagcgcggat aatctgactc caggaaacta tatgcgcaat cgtacgctgg ctgatcttga
    24601 tcgtgtcgtt gctctcggcg gagggcatgg actgggacgc gttctctcat cactttcgtc
    24661 tttgggttct cgtttaacgg gtatcgtcac caccacggat aatggtggct cgacggggcg
    24721 tattcgccgt tcagaaggcg gcattgcctg gggcgatatg cgcaactgcc tcaaccaact
    24781 gataacggaa ccgagcgtcg cctccgcgat gtttgaatac cgttttggcg gcaatggcga
    24841 actttccggg cacaaccttg gaaacttgat gttaaaggcg ctggatcacc ttagcgtgcg
    24901 gcctctggaa gccatcaatt taattcgtaa tctgctgaaa gtggatacgc atttgattcc
    24961 aatgtcagag catcccgtcg atctgatggc gattgacgat caggggcatg aagtttacgg
    25021 cgaggtcaat atcgaccagt taactacgcc gattcaagag ttattattaa cgccgaatgt
    25081 acccgcaacg cgtgaggcag ttcacgctat caatgaagcg gatctcatca ttattgggcc
    25141 tggcagtttt tataccagcc tgatgccaat tctgctgctg aaggaaatcg cccaggcatt
    25201 acgccgcacg ccagcgccga tggtttatat cggcaatctg gggcgtgagt tgagtttacc
    25261 tgcggctaat ttgaagctgg aaagcaagct ggcaattatg gagcagtatg ttggtaaaaa
    25321 agtcattgat gcggtcatcg tcgggccaaa agtggatgtc tcggcggtga aagagcggat
    25381 tgtgatccag gaggtactgg aggccagcga tattccgtat cgtcatgacc gccagttgtt
    25441 acataacgcg ctggaaaagg cgttacaggc tttaggttaa cggaaatccg aaggaaaatt
    25501 ccggcttcct attgaagaca aagtgcgcgt tgtttatgcc ggatgcggcg tgaacgcctt
    25561 atccggccta caaaccgcgc aaattcaata tattgaggag aaaatgtagg cctgataagc
    25621 gtagcgcatc aggctgtttt ccgtttgtca tcagtcttct tcgctatcct gttacgatgc
    25681 ggcaataaac aactcacgca actgatgcaa ctggtcacga atttgtgccg cttcttcgaa
    25741 ctccagattc tgcgcgtgtt gcatcatcag cccttccagt tcatggattt tctgctgcaa
    25801 cgctttcggc gacatatcca tcggcacatt atccggctca acaatcgggc gcgattttcc
    25861 tctgcccttc gctttggttt tggcaatgtt ctgccccagc gccaggatat cgaccacttt
    25921 cttgttcaag ccttgcggcg taatgccgtg ttcctcgttg tacttctgct gtttctcacg
    25981 gcgacgttcg gtttcgccaa tcgctttcgc cattgatggg gtgatcttat cgccgtagag
    26041 aatcgcttta ccgttaacgt tacgtgccgc acgaccaatg gtctggatca acgaacgttc
    26101 ggaacgcagg aagccttctt tgtcagcgtc gaggatcgcc accagcgaca cttccggcat
    26161 atccagacct tcgcgcagta agttgatccc taccagcacg tcgaactcac ccagacgcaa
    26221 gtcgcggata atctccatac gttcgacggt gtcgatatct gagtgaagat aacgcacgcg
    26281 ctcgccatgt tcttcgagat attcggtaag atcttccgcc atccgcttgg tcagtgtggt
    26341 gaccagtacg cgttcgttaa ttgccgctcg ctgacgaatc tccgaaagaa gatcatcaac
    26401 ctgtgtcgcc accggccgca cttcgataat cgggtcaagc aatccggttg gacgcaccac
    26461 ctgatccacc acatcgccgc cggatttttc cagctcgtaa ttacccggcg tcgccgaaac
    26521 atagatggtt tgcggcgcta atgcttcgaa ctcttcaaac ttaagcggac ggttatccag
    26581 cgctgatggc aggcggaagc cgtactccac cagtgtctct ttacgcgccc ggtcaccgcg
    26641 atacatgccg ccaatttgtg gaatggtgac gtgagattca tcgacgacca gcagcccatc
    26701 ggcaggcagg taatcaaaca gcgtcggcgg tggctcaccc ggtccacgac cggagaggaa
    26761 gcgcgagtag ttttcaatcc ccgaacagta gcccagctcg ttcatcatct ccagatcaaa
    26821 ctgggtacgc tgggtcagcc gctgctcttc cagcagtttg ttgttttcca acagcacttt
    26881 gcgtctggcg gccagttctt ctttgatctc ctccatcgcc tgtacgatgc gctcgcgcgg
    26941 tgtgacgtag tgcgttttcg ggtagatggt aaaacgtgga atagtggaaa caatctgccc
    27001 ggtcagcggg tcaaataacg acaatcgttc cacttcctcg tcaaacagtt ccacgcgaag
    27061 tgcaatgtca tccgattctg ccgggaagat atcaatcacc tcgccacgaa cgcggaaagt
    27121 accacgctgg aatgcttgat cattacgagc gtattgcagc tccgccagtc ggcgcagaat
    27181 cgcgcgctga tcgataatca taccgaccgt gagatggagc atcatcttga gatataaatc
    27241 aggatcgccc agaccataaa tcgcggaaac agaggccact acaaccacat cacgccgctc
    27301 cagcatcgct ttggtggcgg ataaacgcat ctgctcaata tgttcgttaa ccgaggcatc
    27361 tttctcaatg aaagtgtcgg aactcggtac ataggcttcc ggctgatagt agtcgtagta
    27421 ggagacgaaa tactccaccg cgttttccgg gaagaactct ttcatttcgc catacagctg
    27481 ggccgccagc gttttgttgg gcgcaagtac catggttggg cgctgaaggt cagcaatgac
    27541 attggcaatg gtgaaggttt tccctgagcc agtcacgcca agtaacgtct ggtgcgccag
    27601 gccatcttcc agcccctctt cgagacgtcg aatcgcctct ggctgatcgc cagaaggttt
    27661 aaaagcggaa ttcagtttga acggtttact catgagtcgc tacctgaagg agttgggcgg
    27721 gcaggtatgt aattttactc gtcgtactta attatgccaa caaattatac tggataaaaa
    27781 aacagttcat caccataata tttctgatac agcgtaaact ccgctgtcaa tcatgagcaa
    27841 aatttactct gtggcgagat aaaactccgg ccttaccggg ttatccccaa agcaacggct
    27901 tttttaacat ttgtcaagat gagtgatgac agttttatgg caagagatgc ctgttcagtg
    27961 actgccattg catttatcta accagttaaa aaataaaaga tatttctttg agccgtcttt
    28021 aacgccaatt cgcgtgcaag ccgcgtattc tctcgcttgc ctcgtgtttt ctaactctaa
    28081 tacacatggt tatccacagg aatagtggat aactgtctcc agcccctatc ccccgccgcc
    28141 tgggcaattc ccacattcgc cgcatgaggc ggaagtaaaa tttttttcgt gattatttta
    28201 gaatttaatt ggttaaattg cagtcaatcg aagacgcgat ctcgctcgca atttaaccaa
    28261 atacagaatg gctacaacaa ggcaaggttt atgtactttc cggttgccgc attttctgga
    28321 ttttctgcaa gccaggggat ctctcccagc agcggcgcgg gaatcatgcg ggtgagcgtg
    28381 gtcatatatt cagcgtgacg ttttcccgga ggcgtaacat cgttcgccac ccaacccgcc
    28441 agagtcagtc cggcgtgttg tattgcctgc gcagtcaaca tcgcgtgatt aatacagccg
    28501 agtttcacac caactaccag tatcaccggc agttgttcct gtgttaccca atctgcaaaa
    28561 gtgaaagtgt cagaaagcgg cgtaaaccag ccgccagcac cttccactaa cacccagtca
    28621 gcctgttgtt caagcgcgcg taatccggcg ctcattacca atgattctat cggcctgccc
    28681 tcttgcgcac tgatgatgtg cggcgaagtg ggttctgcga aggtgtaagg atttactatt
    28741 gcgtaatcca gctgcaggct gctgttgtgc tgtaacgcca gcgcgtcact attacgtaag
    28801 ccttccgggg tcttttcgct gccagaggcg accggtttat aacctgccgt ccgataacct
    28861 actgccttcg cggcttgtaa aagtgcacaa ctggcgacgg ttttccccac ttcggtatcc
    28921 gttccggtga caaaataacg tttactcacg agcaatcact cccaaaaaaa gatgatacgt
    28981 cagaggatat cgcccctgtt gttgcggcca ggccagttgc aatcgctgca attgcgaacg
    29041 cgttaatatt cgcgggtcgc gcccttcatg aagatgcgta gcaccgatgc ctttcagcga
    29101 acgcatggca ctgagcgcat catcaaacca tagtgtgatg ggctgaatat gatgttgata
    29161 atgcacgccg ttcagcgact gttcgatttc atctggcggt aaaaagcgat tagcatgcgg
    29221 acgctcgtcc accgcctgcc acgcctgatg cagttcgggt aacgatccct gcaccagcgt
    29281 ggtaaacgcc accacgcctc cggggcgcac cacccgatac agctcgcgga gtgccgtgga
    29341 taaattaccg caccactgca ccgcgagatt gctccatgca agatcgaacg tcgcagtcgc
    29401 taacggcagg gattcgatat ctcccgccag ataatggtct gcagcatctt tctggcgggc
    29461 ttgcacaagc attggcggtg agagatctaa cgccgtcacc tgtgcgtgac gctctcgcca
    29521 gtggcggctc atccagcctg gcccacaccc cgcgtccagt acgtgggtgt atttacgctg
    29581 tgggagcatt gccagtaaga cgtcagcact ccggcgctgt aactctgcgt gttgctcata
    29641 gtgcgcggct gcccgaccaa atgccgctgc aatggcttgt ttattaaccg ttgccatgca
    29701 gcacctccag cagacggtcg atatcctgca tttcatgcgc tgcggttagc gttaagcgca
    29761 gtcgcgcagt accagcgggt acggttggcg ggcgaatcgc cgtgacccag cagccttgct
    29821 ggcgcagttt ttctgccagt tgtaacgcac ggctgttatc accgacgatc aatggctgga
    29881 tggcgctgca tgaatcagca agcgtaaacg gcaaatcctg tactccggca cgaaaacgcg
    29941 caatgagtga caccagtttt tcgcgccgtg catccccctc atcacggcga atgaccgcca
    30001 gcgacgcacg taatgcctgc gcctgagcgg gcggcatact ggtgttgtag ataaggtggc
    30061 gggcgaattg cagcagataa tccgccaccg tactggagca aagcaccgct gccccgctga
    30121 cgccaaatcc tttgccaaaa gtcaccacca gcaattctgg ttttaccttt tgcagccagc
    30181 agctgccgcg cccctgctcc ccgataacgc ccgtgccgtg ggcatcatcg accatcaacc
    30241 agccattgtg ctgttgcgtt acctgctgga tttccgccag tggcgcacta tcgccgtcca
    30301 tgctgaacac gccttctgtc accaccagtt gctgccccgg acagggggaa gcaagcagtc
    30361 gcgccagatg agtgacatcg ttatgaacaa aacggcgaag ctgcgacggg cttaaactgg
    30421 cagcctccag caatgaggca tggctaagcc ggtcagcgac aatgcggtcc tcttttgcca
    30481 tcatcgcggc aatgaccgcc tgattagcgg caaaaccaga gataaatagc agtgcccgcg
    30541 aatagcccag ccactcggcc agttcttctt ccagcgcctg atgcgcaacg ctataaccgc
    30601 tgacgtgacc ggaaccgccg ctaccgacgc caaattgctc cgcaccctgc tgccaggcac
    30661 ggataatttg cggatgatgg cttaaaccta aataatcgtt actggaaaag ttcagatact
    30721 ggcgatcatc cgccaccagc cagcgtccgg ctccttgcgc cactggataa cggcgacgca
    30781 gggcatcggc agcacgccgc gcatcgagcg ccgcgttgat tttctcctgc cagctcatag
    30841 tgctgccgcg ttgtaatatt cgtcagtatc cggggtcatc agcgcctgtt caagacgttg
    30901 ctgttgttcg ttatcccctg ccagcacggc agtttgctgc ggatttagcc ccagtttgcg
    30961 gaacagttgc aggtctttat cttcttccgg attcggcgtg gtcagcagtt tgcaaccgta
    31021 gaaaatcgag tttgcgcctg ccataaagca catcgcctga gtctgttcgt tcatctgctc
    31081 gcgtccggca gaaaggcgca cgtaagaggt cggcatcatg atccgcgcga ccgcaatggt
    31141 gcgaataaaa tcaaaggcat caacgtcatc gttatcggca agcggcgtgc ctttcacctt
    31201 caccagcatg ttgattggca cgctttccgg cggcgtcggc aggtttgcca gttgcagcaa
    31261 taatccggcg cgatctttta ccgtttcgcc taagcccaca atgccgccag aacagacttt
    31321 gatcccggca tcgcgcactt tttccagcgt atcgaggcgt tcctgataag tgcgggtggt
    31381 gatgatattg ccgtaaaact ccggcgaggt gtcgaggttg tggttgtagt aatccagccc
    31441 ggcgttcgcg aggcgctgcg cctgagattc actcaacgtg cccagcgtca tacacgcctc
    31501 cagccctaaa tcttttaccc cctgcaccat ctgctccagg tacggcatat cgcgttcgtt
    31561 gggattcttc cacgccgcgc ccatgcaaaa acgcgtcgat cccgccgctt tcgctttgcg
    31621 cgccgactcc agcacctgtt caacttccat caaccgctcg gcttccagcc cggttttata
    31681 gcgcgagctt tgcgggcaat atttgcaatc ttccgggcaa gcaccggttt taatcgacag
    31741 caacgtgctg acctgcacct gacgaggatc gaaatgctgg cgatgcacct gctgcgcttc
    31801 aaacagcaga tccagcaacg gtttttcaaa taattctgcg acttgcgaca atgtccagcg
    31861 tgggcggtga gccatggggc ttctccaaaa cgtgtttttt gttgttaatt cggtgtagac
    31921 ttgtaaactt aaatcttttc aatttggttt acaagtcgat tatgacaaag gacgatcttg
    31981 cctttgacca acgccatatc tggcacccat acacatccat gacctccccg ctgccggttt
    32041 atccggtggt gagcgccgaa ggttgcgagc tgattttgtc tgacggcaga cgcctgattg
    32101 acggtatgtc gtcctggtgg gcggcgatcc acggctacaa tcacccgcag cttaatgcgg
    32161 cgatgaagtc gcaaattgat gccatgtcgc atgtgatgtt tggcggtatc acccatgcgc
    32221 cagccattga gctgtgccgc aaactggtgg cgatgacgcc gcaaccactg gaatgcgttt
    32281 ttctcgcgga ctccggttcc gtagcggtgg aagtggcgat gaaaatggcg ttgcagtact
    32341 ggcaagccaa aggcgaagtg cgccagcgtt ttctgacctt ccgcaatggt tatcatggcg
    32401 atacctttgg cgcgatgtcg gtgtgcgatc cggacaactc aatgcacaac ctgtggaaag
    32461 gctatctgcc agaaaacctg tttgctcccg ccccgcaaag ccgcatggat ggtgaatggg
    32521 atgaacgcga tatggttggc tttgcccgcc tgatggtggc gcatcgtcat gaaatcgcgg
    32581 cggtgatcat tgaaccgatt gtccagggcg caggcgggat gcgcatgtac catccggaat
    32641 ggttaaaacg aatccgcaaa atgtgcgatc gcgaaggtat cttgctgatt gccgacgaga
    32701 tcgccaccgg atttggtcgt accggcaaac tgtttgcctg tgaatatgca gaaatcgcgc
    32761 cggacatttt gtgcctcggt aaagccttaa ccggcggcac aatgaccctt tccgccacac
    32821 tcaccacgcg cgaggttgca gaaaccatca gtaacggcga agccggctgc tttatgcacg
    32881 ggccaacttt tatgggcaat ccgctggcct gcgcggctgc aaacgccagc ctggcgattc
    32941 tcgaatctgg cgactggcag caacaggtgg cggctattga agtacagctg cgcgagcaac
    33001 ttgcccccgc ccgtgatgcc gaaatggttg ccgatgtgcg cgtgctgggg gcaatcggcg
    33061 tagtcgaaac aactcgtccg gtgaatatgg cggcgctgca aaaattcttt gtcgaacagg
    33121 gggtatggat ccggcctttt ggcaaactga tttacctgat gccgccctat attattctcc
    33181 cgcaacagtt gcagcgtctg accgcagcgg ttaaccgtgc ggtgcaggat gaaacatttt
    33241 tttgccaata acgggaagtc agcgtgtggg tttctggcta cactttctgc aaactagaaa
    33301 ggagggttca tgaaactcat cagtaatgat ctgcgcgatg gcgataagct gccgcatcgt
    33361 catgtcttta acggcatggg ttacgatggc gataatattt caccgcatct ggcgtgggat
    33421 gatgttcctg cgggaacgaa aagttttgtt gtcacctgct acgacccgga tgcgccaacc
    33481 ggctccggct ggtggcactg ggtagttgtt aatttacccg ctgatacccg cgtattaccg
    33541 caagggtttg gctctggtct ggtagcaatg ccagacggcg ttttgcagac gcgtaccgat
    33601 tttggtaaaa ccggatacga tggcgcagcg ccgccgaaag gcgaaaccca tcgctacatt
    33661 tttaccgttc acgcgctgga tgtagagcat attgatgtcg atgaaggagc cagcggcgcg
    33721 atggtcgggt ttaacgttca tttccactct ctggcaagcg catcgattac cgcgatgttt
    33781 agttaatcac tctgccagat ggcgcaatgc tatctggtat cacttaaagg tattaaaaac
    33841 aactttttgt ctttttacct tcccgtttcg ctcaagttag tataaaaaag caggcttcaa
    33901 cggattcatt tttctatttc atagcccgga gcaacctgtg aacacatttt cagtttcccg
    33961 tctggcgctg gcattggctt ttggcgtgac gctgaccgcc tgtagctcaa caccacccga
    34021 tcaacgtcct tctgatcaaa ctgcgcctgg tacctcttct cgcccgattc tgtcggcaaa
    34081 agaagcgcag aatttcgatg ctcaacacta ttttgcatcc ctgacaccag gtgctgcagc
    34141 gtggaatcct tccccgatta ccctgcctgc gcaacctgac tttgttgtcg gcccggcggg
    34201 cactcaaggt gtaacgcata ccacgattca ggcggcggta gatgcggcaa ttatcaagcg
    34261 taccaacaag cgccagtata ttgccgtgat gcctggtgag tatcagggaa cggtgtatgt
    34321 ccctgctgct ccgggtggaa ttactctgta cggtacaggt gaaaaaccga ttgatgtgaa
    34381 gattgggctt tcccttgatg ggggcatgag ccctgccgac tggcgtcacg acgtcaaccc
    34441 gcgcggcaaa tatatgccag gtaaaccagc gtggtatatg tacgatagct gccagagcaa
    34501 acgcagcgac agtatcggtg ttctctgctc tgcggtcttc tggtcacaaa acaatggcct
    34561 gcaactgcaa aacctgacca tcgaaaacac gctgggcgat agcgtagatg caggtaacca
    34621 tccggcggtg gcactgcgta ctgatggtga ccaggtacag attaacaacg ttaacattct
    34681 cggtcgtcag aacaccttct ttgtcaccaa cagcggtgtg cagaaccgtc tggaaacgaa
    34741 tcgtcagccg cgtacgctgg tgaccaacag ctacattgaa ggggatgtgg atatcgtttc
    34801 tggtcgcggc gcagtggtgt tcgataacac cgaattccgc gtggtgaact cacgtactca
    34861 gcaagaagcg tatgtgtttg caccggctac gctgtccaac atttactacg gtttcctcgc
    34921 cgtaaacagc cgtttcaatg ctttcggtga tggtgtggcg caactgggcc gctcgctgga
    34981 tgttgatgcc aataccaacg gtcaggtggt gatccgtgat agcgccatca acgaaggttt
    35041 taacacggct aaaccgtggg ccgatgcggt gatctctaat cgtccgtttg cgggtaatac
    35101 cggcagcgta gatgataacg acgaaataca gcgcaatctg aatgacacta actacaaccg
    35161 catgtgggaa tacaataacc gcggcgtggg tagtaaagtg gttgcagagg cgaagaagta
    35221 agagcaatta actatttgcc ggatgcggcg taaacgcctt atccggccta cggttcgatg
    35281 cgatttgtag gtcggataag atgcgcaagc atcgcatccg acaataagtg ccgaatgcga
    35341 cctacattca catggcgctt tttacatctg acggttttta ttgaagttaa tcaaactacc
    35401 cgccttgata atctcgcgct cttcagcagt cagactttcc atatagagcg taatttccgt
    35461 taccggcgca tcttcatgga tcacataacc tttaaacgtc gtacccggat tatccagcgc
    35521 cgctttaatg ccagggatgt aaatgtaatc ccccacttca aaggttggca cttccgccat
    35581 ctgcagcggt aacatccccc agttgatgac gttagaacgg tagcgtttag tcgcgtactc
    35641 ttcggcaata ttcgccagac cgccaatcac acgctggcag ctcgccgcct gttcacgcgc
    35701 agaaccatcg cctggtttca ccgcatatac catgctgcca atttcagttt gcagcggatc
    35761 aatatgctcc tgaccagcaa tctgcttaat gcgcgcaaac acctctgtca gctcgctgac
    35821 attccccgcc agacgctgat tttccagctc agcagtcgct ttacttctgc caacataacc
    35881 gggatcgcgg cgtgacaggg taaactccgc cagaccaatc tgatttgaac gataagaaga
    35941 ggtttcaccg gaaggaatca gttcgtcggt ggtggtcact tcgtcgagga tcttcgagca
    36001 cactttcagg acgatattgt cagtcagcgc acccaattcc ggccagtctt taatgttcgg
    36061 tccgtaaatc agcggttgct gagttgcccc tttcacaagg ccctgataaa cacggttttt
    36121 atacggcgtt acatcgaagg cgtactccgg cacgttgtcc cagcaatcaa gttcgctggc
    36181 agaggttaaa tagccaccgt ttgccgcagt cgcagcgata gaacgagcgt ccatcaacgc
    36241 caccgctgac atctgcccat tagctggctt agagccttcg cggttcggga agttacgcgt
    36301 ggtgtggcga atacttaatc cgttgttgat tggcgtatcg cccgcgccaa agcatgggcc
    36361 gcagaacgcg gttctgatga ttgcgcctgc gccaatcaaa tctgctacca cacctttttt
    36421 ggctaaatcc ataaacaccg gctgtgatga cgggtaaacc gccagcgaga aggtgtcatt
    36481 gccacaggat tgaccgcgca gtgcattcgc cgccgcgatg acgttttcgt agttaccgcc
    36541 agaacagccc gcgataatcc cctgctgcac tttcaggcga ccattttcca ctttatccag
    36601 cagcgagagt ttggctttac cgtgcgccac gcgttcggac tcaatttcaa tctcacgcag
    36661 aatgtcggtc aggttctggt tcagtgtgtc gatttcatac acgttgctcg ggtggaacgg
    36721 cagcgcaatc attgatttga tggcgcttaa atcaacgctg atgcagccat cgtagtacgc
    36781 catcggttga gggttaagct ggcagtaatc ctggccgcga ccgtgcagcg ccagccagtt
    36841 atgcacttct tcatcagttt gccagacgga gcttaaacag gtggtttccg tgatcatcac
    36901 gtcaacgctg ttacggaaat cggtagagag cgcgctaacg cccggtccaa cgaactccat
    36961 gactttgttt ttgacgtaac cgtttttgaa caccgcgcca atgatagcca gcgccacatc
    37021 ctgtggcccc acatacggcg caggttttcc ggtcagatgc accgcaacca cgcccggata
    37081 gtcgatatcc caggtgtcat taagcagctg ttttaccaac tcaccgccgc cctcaccgac
    37141 tgccattgtc cctaatgcac cgtaacgggt gtggctgtct gacccgagga tcattttgcc
    37201 cccgccagcc atcatctcac gcatatattg atggatgacc gcaatatgcg gaggcacaaa
    37261 aataccgcca taacgctgag ctgccgataa accaaaaaca tggtcatcac cgttaatggt
    37321 gccgccgacg gcgcagagtg agttatggca gttggtcagc acatacggca gcgggaaacg
    37381 ttccattccg gacgctttag cggtctgtac aataccaaca aaggtaatat cgtgagaggc
    37441 taatgaatca aacttaattt taagtttatc catatttccg gacgtattat gagaagagag
    37501 aatagaccag gcaatagtgc cttttttggc ttcttctttt ttaatttcgc cggtgaaatg
    37561 ttcttcggca attatttcgt tattactggc gagaaacacg cctttt
//
LOCUS       DAJVUN010000014        37254 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.014, whole genome shotgun sequence.
ACCESSION   DAJVUN010000014 DAJVUN010000000
VERSION     DAJVUN010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37254
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.014"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            198..1478
                     /gene="wcaK"
                     /locus_tag="OQQ76_000560"
     CDS             198..1478
                     /gene="wcaK"
                     /locus_tag="OQQ76_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis pyruvyl transferase
                     WcaK"
                     /protein_id="HCS1967156.1"
                     /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNPQAEVDVMSRYPV
                     SSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNI
                     AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP
                     FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDF
                     TASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQV
                     IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGT
                     RLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQVMVADTLGQ
                     LPALNTRLNEAVSRERQTGMQMVKSVLERIGEAK"
     gene            1475..2695
                     /gene="wcaL"
                     /locus_tag="OQQ76_000561"
     CDS             1475..2695
                     /gene="wcaL"
                     /locus_tag="OQQ76_000561"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaL"
                     /protein_id="HCS1967157.1"
                     /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQN
                     THAAWTKYNLAARTRWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESR
                     NLILSAICGQVATPFYADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREV
                     LNHYAPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA
                     PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ
                     LEDVIEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST
                     LHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLDTDELAPVIKRAREKVEHDFNQ
                     QVINRELASLLQAL"
     gene            2706..4100
                     /gene="wcaM"
                     /locus_tag="OQQ76_000562"
     CDS             2706..4100
                     /gene="wcaM"
                     /locus_tag="OQQ76_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis protein WcaM"
                     /protein_id="HCS1967158.1"
                     /translation="MPFKKLSRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHD
                     WIASFKQAFSEGQTVVVPAGFVCDNINTGIFIPAGKTLHILGSLRGNGRGRFVLQDGS
                     LVTGEEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTV
                     SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCT
                     NGKINWGIGIGLAGSTYDNNYPEEQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIK
                     ACNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF
                     RVNNIQMDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELHNKPQHLFMRNIKV
                     MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNEKGQSSVDIDRINHHIV
                     NVEKINFRLPERRE"
     gene            4258..5253
                     /locus_tag="OQQ76_000563"
     CDS             4258..5253
                     /locus_tag="OQQ76_000563"
                     /EC_number="5.1.3.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,
                     octacis-undecaprenol 4-epimerase"
                     /protein_id="HCS1967159.1"
                     /translation="MNDNVLLIGASGFVGTRLLETAIADFNIKNLDKQQSHFYPEITQ
                     IGDVRDQQALDQALAGFDTVVLLAAEHRDDVSPTSLYYDVNVQGTRNVLAAMEKNGVK
                     NIIFTSSVAVYGLNKHNPDENHPHDPFNHYGKSKWQAEEVLREWYNKAPTERSLTIIR
                     PTVIFGERNRGNVYNLLKQIAGGKFMMVGAGTNYKSMAYVGNIVEFIKYKLKNVAAGY
                     EVYNYVDKPDLNMNQLVAEVEQSLNKKIPSMHLPYPLGMLGGYCFDILSKITGKKYAV
                     SSVRVKKFCATTQFVATKVHSSGFVAPYTLSQGLDRTLQYEFVHAKKDDITFVSE"
     gene            5496..6389
                     /gene="galF"
                     /locus_tag="OQQ76_000564"
     CDS             5496..6389
                     /gene="galF"
                     /locus_tag="OQQ76_000564"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalF"
                     /protein_id="HCS1967160.1"
                     /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI
                     VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV
                     RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS
                     QVLAKRMPGDLSEYSVIQTKEPLDCEGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS
                     ADIWPELERTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY
                     GLRNLKEGAKFRKGIEKLLSE"
     gene            6722..7690
                     /locus_tag="OQQ76_000565"
     CDS             6722..7690
                     /locus_tag="OQQ76_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001718489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCS1967161.1"
                     /translation="MDDSVSVVIPYYNDSPRIEKCLDSICSQTRQAIEVIIVDDCSKD
                     SALLLKIIDKFKNKINIRYLRNDENKNGAYSRNVGMREARGGIVAFLDADDYWATDHL
                     EESVNALLLNGVEFVFSNVIEVDCCGCESRRKVTNPQYLDNKYDIILLSPPQTNSFLF
                     RKKIFDTKEIFFDENLRRHQDYQFLTLILEKNISYQYIDKYTSYYVQSHRPHTERMDY
                     KSVFLFWEKYNSYVSGRLLKKFITGLVLEVVLVYGKNKTKSFIDSHELVKINASKLFL
                     YLVLKTNFGVNANRVIYPFFYYILFSPKSILKKISQRINRKLVHNA"
     gene            7683..8792
                     /locus_tag="OQQ76_000566"
     CDS             7683..8792
                     /locus_tag="OQQ76_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1967162.1"
                     /translation="MRNKISIVTTNITNNGGTERVIANVANSLSEIYDIRIYSLSTTE
                     GECFYPLNERIHIKHMGMMCYEHEKSVLKKTFKKLINVFYSINEFKKIRSNYIIGVNK
                     NINILLVLSFLLNYKRKRDYKLIGWEHFAHNAPMSLFTRILRELLYKYLDDLIVLTKF
                     DEKYYKAKKIKTTVIENAYTAMDVDNLKTVSKGNVILSIGRHTSQKRFDKLLHIWKEI
                     VKKNDGLKLRIVGDGPLLDENKKLAQKLNLSDSVVFAPPTKKINEEYQNASLFLMTSD
                     YEAFPMVLLEALKNGLPCIAFDCDTGPRDIIVNGVDGFVIPINDSLKFVEKTIDVMNN
                     ENLRYQLSSNAKVNVERFNEEHISKKWLIKLKQLQ"
     gene            8819..9871
                     /gene="wzy"
                     /locus_tag="OQQ76_000567"
     CDS             8819..9871
                     /gene="wzy"
                     /locus_tag="OQQ76_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001718486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O169/O183 family O-antigen polymerase"
                     /protein_id="HCS1967163.1"
                     /translation="MIIITSFMVLLFLFTDNLKLKNFRIILFYFFSLCFSVLVYFRPE
                     YMLNTDYKEYYNYFKWINFDNIYNLSDTIGFEYGFGYIVTLIKYFFESERACFSGIAF
                     LSVFISYKAILRLNPKTTAFSFSLFLLSFCVYIFLGQIRQGISLSLGLLAISYLLEDK
                     RKQFLLTVIIASSIHVTALILILAPFVKYFRIKYIFYSLLLSFAFVFIDVIKPLIITL
                     AQFIPFGSFITGKIIAYGNSEFSTKVGFSFIQVYYVLLSTVLYILVKKYEYKNNYILT
                     LCKIFMVGVILNFTFNSFSVLLRLTYYYLALDCILMGYLLNMAKNGYTKILIYCPTLM
                     LFILRFYMQWSEHING"
     gene            9864..10955
                     /locus_tag="OQQ76_000568"
     CDS             9864..10955
                     /locus_tag="OQQ76_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1967164.1"
                     /translation="MVEHCSKNKKILVDCRMINASGIGVYTREIIKELKKYRYLQIEL
                     LLQEEQQLPIDVEDIGFKIHYINFSRYSIKNIGGMKHLLNGFDVYFMPSLSIPPLLKK
                     GCLIITTVHDLCPVALRKLFGSKKAVAYWALLLIQLVCSNKIISISRFTAKEINKYYF
                     GLFKSKLYVIGNGIRNIFNLELNSETENSHEEYGICVGNIKPHKNVVPLIDYLKTNII
                     NKKIYFIGEINGFSTKINKSLLNDLPENIVFTGRVSDQELHNYYRNASFFIFPSLYEG
                     FGLPLLEAMNYRLPIFASNIDVFKEVAGETINYFDPYTFDALADRINKLKKNKKSIES
                     YARVLQLYSWDNNVASLLRIMNEEDIARK"
     gene            10930..12048
                     /locus_tag="OQQ76_000569"
     CDS             10930..12048
                     /locus_tag="OQQ76_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001718484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCS1967165.1"
                     /translation="MKKILLVNKYYHPDIGGVETVVQQHAQLLKYEYSVTVLCISKEF
                     SWYTKNEFINGVKVIRCSSLGTYFSMPLSITFFLHYFINYLKSDVIINHVPFPLMDLA
                     FFIIDRLVKRKNILFWHSDIVKQKALKKILRPFIINTINRSTQILTTSPNLKANSEDI
                     GEYQKKTDVLPLFINSNVINGYIKNLNAEKKYDFIFFGRLCYYKGVDILLDAVKILKN
                     KGAEPEIFMAGDGDLVNYIENEIIENKIKNITFIKRFLTEEEKYHYLSISKCFLFPSV
                     AASEAFGITQLEAMSLGLPVINTNLNTGVPFVSLNGVTGITVTAGNPDDLANAMLSLL
                     RDDEKYESFKTNCKVRVSELFEENVVKNKLFKVIEELN"
     gene            12108..13544
                     /gene="cpsB"
                     /locus_tag="OQQ76_000570"
     CDS             12108..13544
                     /gene="cpsB"
                     /locus_tag="OQQ76_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HCS1967166.1"
                     /translation="MSNNIICPVIMAGGSGSRLWPLSRLFYPKQFLKLVDDSSMLQET
                     ISRLGDLPCSLPVVICNEQHRFIVAEQLRMINKLTNNIILEPVGRNTAPAIALAAMIS
                     ESFSSLEDPLLLVLAADHDIKNHKSFRDAVRKAIPFAEQGKLVTFGIVPSMAETGYGY
                     IKRGHEISLENDEVAYTVSKFYEKPNISDAQKFLASGKFYWNSGMFLFRASRYLSELN
                     KFRPDIYLACASSTKNINTDLDFIRVDENSFSNCPDESIDYAVMEQTSDAVVVPMNAG
                     WSDVGSWSSLWEISKKNEQGNVNHGDVINHNTENSYVYAESGLVTTIGVKDLVVVQTK
                     DAVLVADRNSVQDVKKVVEQIKAHGRSEHQMHREVYRPWGKYDSIDAGERYQVKRITV
                     KPGEGLSVQMHYHRSEHWVVVAGTAKVTIDGVIKLLGENESLYIPQGAKHCLENPGKI
                     PLELIEVRSGSYLEEDDVVRFADRYGRV"
     gene            13658..15028
                     /gene="cpsG"
                     /locus_tag="OQQ76_000571"
                     /gene_synonym="manB"
     CDS             13658..15028
                     /gene="cpsG"
                     /locus_tag="OQQ76_000571"
                     /gene_synonym="manB"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000164218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis phosphomannomutase
                     CpsG"
                     /protein_id="HCS1967167.1"
                     /translation="MKKLNCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG
                     GDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF
                     SYINAKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIP
                     NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE
                     KNPGAKIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY
                     FRDFAYCDSGMIPWLLVAELVCLKGKTLGELVRDRMAAFPASGEINSKLAQPVEAINR
                     VEQHFSREALAVDRTDGISMTFADWRFNLRSSNTEPVVRLNVESKANVELLESRVSII
                     LNILNM"
     gene            15065..16048
                     /locus_tag="OQQ76_000572"
     CDS             15065..16048
                     /locus_tag="OQQ76_000572"
                     /inference="COORDINATES: protein motif:HMM:NF012383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967168.1"
                     /translation="MNYISLETLMNDIRDSINLLSKHNFDLVVGIPRSGMIPAYLISL
                     YLNIDVTDVNSFILNTPIQRGSTRTSGKRIYNPHDAQRILLVDDSFSTGKSMRNILDS
                     IPVDLKKNIKTMVAYTSDVNGAGLDIYIRHVSHPRLFEWNILNHSIISNSCFDIDGVL
                     CVDPNELQNDDGENYIKFICEAEPKFIPKFKIKYLVTNRLEKYRDITEAWLLKNNIQY
                     EKLIMLNMATKEERQSAGIHSRHKAEFYKRSGCDLFVESDINQAIEIMKYTGKYVYCI
                     DNNRMYSPSAIQYLSKRPLDFMNDIILYLPRILYRRLPLETKMAIKKRLKP"
     gene            complement(16082..17494)
                     /gene="wzx"
                     /locus_tag="OQQ76_000573"
     CDS             complement(16082..17494)
                     /gene="wzx"
                     /locus_tag="OQQ76_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_052920442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O183 family O-antigen flippase"
                     /protein_id="HCS1967169.1"
                     /translation="MSIFNNLKWNAISQLFKIATQLISMIYLARLIAPEDYGIMAMAT
                     VVTNFAILFRDLGTSAAIVQRDSIDESLKSAIFWLNLLLGIIVGTAILFSSSYFSELY
                     DVPKLKPVLSLLSINFFLLGATSVHLSLLERESKFETISKIEIFSFGSALIIAIAMAY
                     LNFGVYSLVTQSIVSTLLSSGLFWYLSSWSPRIKIENIFKNTKSIFSFSYQLSLFNFI
                     NYFARNLDSFLIGKYMSATILGAYNLAYRIMLFPLTSITFIVNRSLFPILSKNKHKHA
                     EVEKIYLNTVYTIWFITIPLIISLLCLNEMVINIIFGEKWHLSSSILVWLAPTAIIQS
                     ILSTTGIIFMSQGRTGILVLLGVQGAILTGIAFVIGVNDNIISLAKYYFIANLVHFFP
                     CMALTMYVIKSNFYKLILKTYPLFIAGFISYYIIYILKKHLDHSFLSLVILTIICFVV
                     FIVSLLPTKEVKNFINRLIK"
     gene            17688..19094
                     /gene="gndA"
                     /locus_tag="OQQ76_000574"
     CDS             17688..19094
                     /gene="gndA"
                     /locus_tag="OQQ76_000574"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HCS1967170.1"
                     /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA
                     ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN
                     TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA
                     AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQT
                     FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP
                     LSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYA
                     QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY
                     FKQIADDYQQALRDVVAYAVQNGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGA
                     HTYKRIDKEGVFHTEWLD"
     gene            19343..20509
                     /gene="ugd"
                     /locus_tag="OQQ76_000575"
     CDS             19343..20509
                     /gene="ugd"
                     /locus_tag="OQQ76_000575"
                     /EC_number="1.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HCS1967171.1"
                     /translation="MKITISGTGYVGLSNGILIAQNHEVVALDIVQAKVDMLNKKQSP
                     IVDKEIEEYLATKDLNFRATTDKYDAYKNADYVIIATPTDYDPKTNYFNTSSVEAVIR
                     DVTEINPNAVMVIKSTIPVGFTKSIKERLGIDNLIFSPEFLREGKALYDNLHPSRIVI
                     GERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA
                     ESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAI
                     VDANRTRKDFIADAILSRKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVII
                     YEPVMKEDSFFNSRLERDLATFKQQADVIISNRMAEELKDVADKVYTRDLFGSD"
     gene            20656..21636
                     /gene="wzzB"
                     /locus_tag="OQQ76_000576"
     CDS             20656..21636
                     /gene="wzzB"
                     /locus_tag="OQQ76_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HCS1967172.1"
                     /translation="MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIAL
                     AIGYLAVAKEKWTSTAIVTQPDVGQIAGYTNAMNVIYGPAVPKVSDIQASLIGRYSTA
                     FSALAETLDNQEEAEKLTIEPTVKNQSLPLAVSYVGETPEGAQKQLAKYIQQVDDQVN
                     VELEKDLKDNIALRMKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ
                     QTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIH
                     AYRYVMKPTLPIRRDSPKKAITLILAMLLGGMVGAGIVLGRNALRNYNAK"
     gene            complement(21733..22344)
                     /locus_tag="OQQ76_000577"
     CDS             complement(21733..22344)
                     /locus_tag="OQQ76_000577"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HCS1967173.1"
                     /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDK
                     TIESGKVTFFSRTKQRLWTKGETSGNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTS
                     SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA
                     ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLRKRHQ"
     gene            complement(22338..23114)
                     /gene="hisF"
                     /locus_tag="OQQ76_000578"
     CDS             complement(22338..23114)
                     /gene="hisF"
                     /locus_tag="OQQ76_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HCS1967174.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA
                     DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLDDAAKILSFGADKISI
                     NSPALADPTLITRLADRFGVQCIVVGIDTWYDGETGKYHVNQYTGDETRTRVTQWETL
                     DWVQEVQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE
                     AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC"
     gene            complement(23096..23833)
                     /gene="hisA"
                     /locus_tag="OQQ76_000579"
     CDS             complement(23096..23833)
                     /gene="hisA"
                     /locus_tag="OQQ76_000579"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707919.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HCS1967175.1"
                     /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLSRLQDYAAQGAE
                     VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEDDVAALLEAGVARVVVG
                     STAVKSPERVKGWFERFSADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY
                     LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALRGTG
                     VRGVIVGRALLEGKFTVKEAIACWQNA"
     gene            complement(23833..24423)
                     /gene="hisH"
                     /locus_tag="OQQ76_000580"
     CDS             complement(23833..24423)
                     /gene="hisH"
                     /locus_tag="OQQ76_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HCS1967176.1"
                     /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL
                     PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED
                     VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIDDGAYFYFVHSYAMPVNPWTIAQCNYG
                     EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM"
     gene            complement(24423..25490)
                     /gene="hisB"
                     /locus_tag="OQQ76_000581"
     CDS             complement(24423..25490)
                     /gene="hisB"
                     /locus_tag="OQQ76_000581"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707917.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HCS1967177.1"
                     /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQ
                     KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD
                     CRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDRETLNWPMIGE
                     QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEV
                     NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR
                     PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG
                     RTLRQAIRVEGDTLPSSKGML"
     gene            complement(25490..26560)
                     /gene="hisC"
                     /locus_tag="OQQ76_000582"
     CDS             complement(25490..26560)
                     /gene="hisC"
                     /locus_tag="OQQ76_000582"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HCS1967178.1"
                     /translation="MSTVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE
                     FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDS
                     ILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTG
                     QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL
                     AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER
                     EYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL
                     RITVGTREESQRVIDALRAEQV"
     gene            complement(26557..27861)
                     /gene="hisD"
                     /locus_tag="OQQ76_000583"
     CDS             complement(26557..27861)
                     /gene="hisD"
                     /locus_tag="OQQ76_000583"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HCS1967179.1"
                     /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK
                     AHGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQ
                     KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLC
                     SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK
                     RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAAD
                     MARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN
                     ARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV
                     QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA"
     gene            complement(27867..28766)
                     /gene="hisG"
                     /locus_tag="OQQ76_000584"
     CDS             complement(27867..28766)
                     /gene="hisG"
                     /locus_tag="OQQ76_000584"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HCS1967180.1"
                     /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE
                     NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG
                     GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR
                     AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ
                     GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE
                     TMEKLKALGASSILVLPIEKMME"
     misc_feature    complement(28813..28936)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(28912..28962)
                     /gene="hisL"
                     /locus_tag="OQQ76_000585"
     CDS             complement(28912..28962)
                     /gene="hisL"
                     /locus_tag="OQQ76_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="his operon leader peptide"
                     /protein_id="HCS1967181.1"
                     /translation="MTRVQFKHHHHHHHPD"
     gene            29245..29496
                     /gene="yefM"
                     /locus_tag="OQQ76_000586"
     CDS             29245..29496
                     /gene="yefM"
                     /locus_tag="OQQ76_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoeB-YefM toxin-antitoxin system antitoxin YefM"
                     /protein_id="HCS1967182.1"
                     /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE
                     YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE"
     gene            29493..29747
                     /gene="yoeB"
                     /locus_tag="OQQ76_000587"
     CDS             29493..29747
                     /gene="yoeB"
                     /locus_tag="OQQ76_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin YoeB"
                     /protein_id="HCS1967183.1"
                     /translation="MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGK
                     PEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY"
     gene            29830..30654
                     /locus_tag="OQQ76_000588"
     CDS             29830..30654
                     /locus_tag="OQQ76_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1967184.1"
                     /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG
                     IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAH
                     RIPRIIFTSSTSVYGDAQGMLKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA
                     GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP
                     ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE"
     gene            30700..31629
                     /locus_tag="OQQ76_000589"
     CDS             30700..31629
                     /locus_tag="OQQ76_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1967185.1"
                     /translation="MKPLLDVLMILDALEKEGSFVAASAKLYKTPSALSYTVHKLESD
                     LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT
                     FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG
                     FSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE
                     AITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQ
                     TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI"
     gene            31844..31906
                     /gene="yoeI"
                     /locus_tag="OQQ76_000590"
     CDS             31844..31906
                     /gene="yoeI"
                     /locus_tag="OQQ76_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YoeI"
                     /protein_id="HCS1967186.1"
                     /translation="MGQFFAYATVITVKENDHVA"
     gene            31896..33254
                     /gene="plaP"
                     /locus_tag="OQQ76_000591"
     CDS             31896..33254
                     /gene="plaP"
                     /locus_tag="OQQ76_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PlaP"
                     /protein_id="HCS1967187.1"
                     /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS
                     GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS
                     LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV
                     VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD
                     GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI
                     MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR
                     TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK
                     DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED
                     VA"
     gene            33464..34393
                     /locus_tag="OQQ76_000592"
     CDS             33464..34393
                     /locus_tag="OQQ76_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HCS1967188.1"
                     /translation="MVLCWDLSCSVGVFALIQAGLLTYEAGAFPWLGTVIGGYIFGLG
                     IVLAGGCATGTWYRAGEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYSTEHNSI
                     AETFNLSVWPLVTVLLVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVT
                     AVLIGLIALLAWPLSEATGRMFGLGITSPTANILQFLVAGDVKYINWGVFLVLGIFVG
                     SFIAAKASREFRVRAADAQTTVRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGW
                     IGLVFMILGVWTASWLVYVRPQRKARLATAAAN"
     gene            34407..34634
                     /locus_tag="OQQ76_000593"
     CDS             34407..34634
                     /locus_tag="OQQ76_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HCS1967189.1"
                     /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE
                     AIPQWAAEEGHAITDYQQIGDAAWSITVQKA"
     gene            complement(34677..36104)
                     /gene="sbcB"
                     /locus_tag="OQQ76_000594"
     CDS             complement(34677..36104)
                     /gene="sbcB"
                     /locus_tag="OQQ76_000594"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HCS1967190.1"
                     /translation="MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIG
                     EPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGY
                     NNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
                     LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLM
                     ALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDS
                     DTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNL
                     KILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLP
                     ALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQML
                     VQQYADDKEKVALLKALWQYAEEIV"
     gene            36313..>37254
                     /gene="dacD"
                     /locus_tag="OQQ76_000595"
     CDS             36313..>37254
                     /gene="dacD"
                     /locus_tag="OQQ76_000595"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase DacD"
                     /protein_id="HCS1967191.1"
                     /translation="MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDY
                     TTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVF
                     VGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLH
                     LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSGKSLTWNGITQQNRN
                     GLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLR
                     WGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGTEQE"
BASE COUNT        10183 a         8126 c         8771 g        10174 t
ORIGIN      
        1 tcttgtaggc ctgataagac gcgccagcgt cgcatcaggc actgaatgcc ggatgcggcg
       61 taaacgcctt atccggccta cggttctgtg ctcgggtctt gtaggcctga taagacgcgt
      121 cagcgtcgca tcaggcaaaa agcggcaacg aacaaaacaa acacagcctc acctggcatc
      181 aaatttatga ggaaaaaatg aaattactta ttctgggcaa ccacacttgc ggcaatcgtg
      241 gcgacagcgc catcttgcgc ggcttacttg atgccatcaa catcctcaat ccacaagccg
      301 aagtggacgt gatgagccgc tatccggtca gttcttcctg gctgctcaac cgcccggtaa
      361 tgggcgatcc gctgttcctg caaatgaaac aacacaacag cgcggcgggc gttgtcgggc
      421 gcgttaaaaa agtcctccgt cgccgctacc agcatcaggt attgctctca cgcgtcaccg
      481 acactggcaa gctgcgtaat atcgccatcg cccagggatt caccgacttc gtgcgcctgc
      541 tgtcaggtta cgatgccatt atccaggtcg gcggatcgtt ttttgtcgat ctctacggcg
      601 tgccgcagtt tgaacatgca ctttgcacat ttatggcgaa aaagccgctg tttatgattg
      661 gtcacagcgt cggtcccttc caggatgagc aatttaacca actggcgaac tatgtctttg
      721 gtcattgcga cgcgctgatc ctgcgcgaat cggtcagcct tgatttgatg aaacgcagca
      781 atatcactac cgcaaaagtg gaacatggcg tcgataccgc gtggctggtc gatcaccaca
      841 ccgaagactt cactgccagc tatgccgttc aacactggct ggacgttgcc gcacaacaga
      901 aaacggtggc cattaccctg cgcgaactgg caccgttcga caaacgtctc ggcaccactc
      961 aacaagcgta tgaaaaagcc tttgccgggg tggtcaatcg cattctcgac gaaggctatc
     1021 aggtgattgc gctctccacc tgtacgggta tcgacagcta taacaaagac gaccgcatgg
     1081 tggcgctcaa cctgcgccag cacatcagcg atcctgcccg ttaccacgta gtgatggatg
     1141 aactcaacga tctggaaatg ggcaaaattc tgggggcctg tgaactcacc gtcggtacgc
     1201 gcctgcactc cgccattatc tcaatgaact ttgccacccc ggcgattgcc atcaactatg
     1261 aacataaatc cgctgggatc atgcagcagc tgggactacc ggagatggcg attgatatcc
     1321 gtcatttatt agacggcagc ctgcaagtga tggttgcgga taccttaggc cagcttccgg
     1381 cactgaacac gcgacttaac gaagccgtca gtcgcgaacg tcagacggga atgcagatgg
     1441 tgaaatctgt gcttgaacgc atcggggagg cgaaatgaag gtcggcttct ttttactgaa
     1501 atttccgctg tcgtcggaaa ccttcgtcct caatcaaatt accgcgttta ttgatatggg
     1561 ctttgaggtg gagattgtcg cgctgcaaaa aggcgacacc cagaacaccc acgcggcatg
     1621 gacgaaatac aaccttgccg ccagaacccg ctggttacag gacgaaccta cgggcaaagt
     1681 ggcgaaactg cgccaccgtg ccagccagac cttacgcggc attcatcgta aaaatacctg
     1741 gcaggcactt aacctcaaac gctatggtgc cgagtcgcga aacctgattt tgtctgccat
     1801 ttgcggccag gtcgcaacac cattttatgc cgatgtcttt atcgctcatt ttggccctgc
     1861 gggggtaacc gcagcaaaac tacgcgaact gggtgtcatt cgcggcaaaa ttgccaccat
     1921 cttccacggt attgatatct ccagtcggga agtgctcaac cactacgctc ccgaatatca
     1981 acaactgttt cgccgtggcg acctgatgtt accgataagc gatctgtggg ccggaaggct
     2041 gcaaaaaatg ggctgcccga gggaaaaaat cgccgtatcg cgtatgggcg tggacatgac
     2101 gcgctttagc ccgcgtccgg tgaaagcgcc cgcaacgccg ctggaaatca tttccgtcgc
     2161 acgcttaacc gagaaaaaag gcctgcatgt ggcgattgaa gcctgccgtc agttgaaaga
     2221 gcagggcgtg gcatttcgct atcgcatcct cggcattggc ccgtgggaac gacgcctgcg
     2281 caccctcatc gaacaatatc aactggaaga tgtgatagag atgccgggct ttaaaccgag
     2341 ccatgaagtg aaagcgatgc tcgacgacgc ggatgtcttc ctgttgccat cggttacagg
     2401 tgcggatggc gatatggaag gtattccggt ggcgctaatg gaagcaatgg cggtcggcat
     2461 tccggttgtt tcaactctgc atagcggaat accagaactg gttgaggccg ataaatccgg
     2521 ctggctggtg cctgagaacg atgctcgcgc actggcgcaa cgcctggcgg catttagcca
     2581 actggacacc gacgaactgg ctccggttat caaacgtgcg cgcgaaaaag tcgaacacga
     2641 ttttaaccag caggtgatca atcgagaact cgccagcttg ctgcaggctt tatagaggag
     2701 aacgtatgcc atttaaaaaa ctctcccgac gcaccttcct gacggcaagc tcggcgcttg
     2761 ccttcctcca tacccctttc gctcgcgcac ttcccgcccg acaaagcgtt aacattaacg
     2821 actacaaccc tcatgactgg atcgcctcat ttaaacaagc cttcagcgaa gggcaaacgg
     2881 tcgtcgtgcc tgctggattc gtttgtgaca atatcaacac cggcatcttc attcctgcag
     2941 gtaaaacgtt acacatcctt ggaagtctgc gcggcaacgg cagagggcga tttgtcttac
     3001 aggacggcag cctggtgaca ggggaggagg gcggcagtat gcataacatc accctggatg
     3061 tgcgtggttc tgactgcacc atcaaagggc tggcgatgag cggctttggt ccggtaacgc
     3121 agatttatat cggcggcaaa aacaaacggg tcatgcgcaa cctgaccatc gataacctga
     3181 ctgtcagcca cgctaattac gccatcttac gccagggatt tcataaccag attatcggtg
     3241 ccaacatcac caattgtaag ttcagcgact tacaaggcga cgccattgaa tggaacgtgg
     3301 caattaacga cagtgatatt ttgatatctg accatgtcat cgagcgcatc aactgtacca
     3361 acggcaaaat caactggggc atcggtatag gccttgcggg aagtacctac gataacaact
     3421 acccggaaga gcaggcagtg aaaaactttg tcgtggcgaa tatcacggga tcggattgtc
     3481 ggcagttgat ccatgttgaa aatggtaaac attttgttat tcgtaatatc aaagcctgca
     3541 atatcacgcc ggatttcagt aagaaagcag gtattgataa cgccacagtc gctatttacg
     3601 gttgtgacaa tttcgtgatt gataatattg aaatgattaa tagcgccggg atgttaatcg
     3661 gctatggggt aattaaaggc aaatatctct caataccgca aaatttccga gtgaataata
     3721 ttcaaatgga taacacccat cttgcttata aattgcgcgg catccaaatc tccgccggga
     3781 atgctgtctc ctttgtggcg ctgactaaca ttgagatgaa gcgtgcgtcg ctggagttac
     3841 acaacaaacc gcaacacctt tttatgcgaa atatcaaggt gatgcaggaa tcctctgttg
     3901 gaccagcatt gagcatgaac ttcgacatgc gcaaagacgt tcgcggcgtc tttatggcga
     3961 aaaaagaaac actgctgtca cttgcaaatg ttcatgcggt gaatgaaaaa gggcaaagct
     4021 ccgtcgatat cgacaggatt aatcaccata ttgttaatgt ggaaaagatt aactttagat
     4081 tgccggaacg gagggagtag atttgcgacc attcataaac ttactggata taatgttcta
     4141 aaagattata atcctcacac taactgttaa agctggggct gggcagcatt gactactcag
     4201 ggaaggtact catctttatc ttgtgtttct tacgtaacaa ccagactaaa gtgatttatg
     4261 aacgataacg ttttgctcat aggagcttcc ggattcgtag gaacccgact acttgaaacg
     4321 gcaattgctg actttaatat caagaacctg gacaaacagc agagccactt ttatccagaa
     4381 atcacacaga ttggcgatgt tcgtgatcaa caggcactcg accaggcgtt agccggtttt
     4441 gacactgttg tgctactggc agcggaacac cgcgatgacg tcagccctac ttctctctat
     4501 tatgatgtca acgttcaggg tacccgcaat gtgctggcgg ccatggaaaa aaatggcgtt
     4561 aaaaatatca tctttaccag ttccgttgct gtttatggtt tgaacaaaca caaccctgac
     4621 gaaaaccatc cacacgatcc tttcaaccac tacggaaaaa gtaagtggca ggcagaggaa
     4681 gtgctgcgtg aatggtataa caaagcacca acagaacgtt cattaaccat catccgtcct
     4741 accgttatct tcggtgaacg caaccgcggt aacgtctata acttgctgaa acagatcgct
     4801 ggcggcaagt ttatgatggt gggcgcaggg actaactata agtccatggc ttatgttgga
     4861 aacattgttg agtttatcaa gtacaaactg aagaatgttg ccgcaggtta tgaggtttat
     4921 aactacgttg ataagccaga cctgaacatg aaccagttgg ttgctgaagt tgaacaaagc
     4981 ctgaacaaaa agatcccttc tatgcacttg ccttacccac taggaatgct gggtggatat
     5041 tgttttgata tcctgagcaa aattacgggc aaaaaatacg ctgtcagctc agtgcgcgtg
     5101 aaaaaattct gcgcaacaac acagtttgtc gcaacgaaag tgcattcttc aggttttgtg
     5161 gcaccgtata cgctgtcgca aggtctggat cgaactctgc agtatgaatt cgttcatgcc
     5221 aaaaaagacg acataacgtt tgtttctgag taatgcagac gagtcagaga aaaaaggacc
     5281 aggttggact acgattattc ggaaagaggt actgattaaa ttatcagtat gtggaattcc
     5341 gagtaatccg agtaacccag atgctgatgg tgtgtagtgt tatcgtaagg tttaatcaaa
     5401 gttatgcgga actaagctat ggtatatagc cataccgttt ggctaaccta tggcaataat
     5461 ttacgcacta tcagccactt agaggtagga aaataatgac gaatttaaaa gcagttatac
     5521 cggtagcggg tcttgggatg catatgttgc ctgccactaa ggcgataccc aaagagatgc
     5581 taccgatcgt cgacaagcca atgattcagt acattgttga cgagattgtg gctgcaggga
     5641 tcaaagaaat cctcctggta actcacgcgt ccaagaacgc ggtcgaaaac cacttcgaca
     5701 cctcttatga attagaatct ctccttgaac agcgcgtgaa gcgtcaactg ctggcggaag
     5761 tgcagtctat ctgtccgcct ggcgtgacca ttatgaacgt gcgtcagggc gaacctttag
     5821 gtttgggcca ctccatttta tgtgcgcgac ctgccattgg tgacaatcca tttgtcgtgg
     5881 tgctgccaga cgttgtgatc gacgacgcca gcgccgaccc gctacgctac aaccttgctg
     5941 ccatgattgc gcgcttcaat gaaacgggcc gtagccaggt gctggcaaaa cgtatgccgg
     6001 gtgacctctc tgaatactcc gtcattcaga caaaagaacc actggattgt gaaggtaaag
     6061 tcagccgcat tgttgaattt atcgaaaaac cggatcagcc gcagacgctg gactcagaca
     6121 tcatggccgt tggtcgctat gtgctttctg ccgatatttg gccggaactt gaacgcactc
     6181 aacctggtgc atgggggcgt attcagctga ctgatgccat tgctgaactg gcgaaaaaac
     6241 agtccgttga tgcaatgctg atgactggtg acagctacga ctgcggtaaa aaaatgggct
     6301 atatgcaggc gtttgtgaag tatggactgc gcaacctgaa agaaggggct aaattccgta
     6361 aagggattga gaagctgtta agtgaataat gaaaatctga ccggatgtaa cggttgataa
     6421 gaaaattata acggcagtga agattcgtgg tgaaagtaat ttgttgcgaa tattcctgcc
     6481 gttgttttat ataaacaatc agaataacaa tgagttagca ataggatttt agtcaaagtt
     6541 ttccaggatt ttccttgttt ccagagcgga ttggtaagac aattagcgtc tgaattttat
     6601 gaattacttt ggctggtgcc agagttgaca aagacatgta gaataaaaag tgcactggta
     6661 gctttaagcc aggggcggta gcgtgtcaaa tatatatttt attattgagt ggcttacata
     6721 tatggatgat tcggtttctg tcgttatacc ttattacaat gattcccctc gtattgaaaa
     6781 gtgtttggat agtatatgtt cacaaaccag acaagctatt gaagttataa tagttgatga
     6841 ttgttcaaaa gatagtgcat tactactaaa aatcattgat aaatttaaaa ataaaataaa
     6901 tatacgatat ttgagaaatg atgaaaataa aaatggggca tattccagaa acgtagggat
     6961 gagagaagca aggggaggaa ttgttgcttt tctcgatgct gacgactatt gggccacaga
     7021 tcatctcgag gaaagtgtaa atgctttgtt gttaaatggg gtggaatttg ttttttcaaa
     7081 tgtaatagag gttgattgtt gtggttgtga gagtcgaaga aaagttacta atccccaata
     7141 tttggataat aaatacgata taatactgct ttctcctcct caaactaatt cattcctatt
     7201 taggaaaaaa atatttgaca ctaaagagat tttttttgat gaaaacttac gtagacatca
     7261 agattatcaa tttcttactt taatattaga aaaaaatatt tcatatcaat atattgataa
     7321 atatacttca tattatgtgc aatcacatcg tcctcatact gaaagaatgg attataaatc
     7381 tgttttttta ttttgggaaa aatataattc ttatgtttct gggagattac taaaaaaatt
     7441 tattaccggt ttagttcttg aggtggttct tgtgtatggg aaaaataaaa caaagagttt
     7501 tattgattcg catgaacttg tcaagataaa cgcatcgaaa ctatttcttt atcttgtgtt
     7561 aaaaacaaat tttggtgtta atgctaatag ggtgatttat cctttttttt attatatttt
     7621 attcagcccc aaaagcatat taaaaaagat atcacaaagg attaatagaa agttggtaca
     7681 taatgcgtaa taagatatct atagttacta caaatattac taataatggt ggtactgagc
     7741 gagtaatagc aaatgttgct aattctcttt cagaaattta tgatattcgt atttatagcc
     7801 tatctactac tgaaggcgaa tgtttttatc ccctaaacga acgtatacat ataaaacata
     7861 tggggatgat gtgttatgag catgaaaaat cagttttaaa aaaaacattc aaaaagttaa
     7921 taaatgtttt ctattcaata aatgaattta aaaaaataag gtcaaattat ataattggag
     7981 tcaacaagaa cataaatata cttctagttc tatcgttttt gttaaattat aaaagaaaga
     8041 gagattataa actgattggg tgggaacatt ttgcacataa tgctcctatg tcactattta
     8101 ccagaatttt acgtgagcta ttatataaat acttagatga tttaattgtt ctaactaaat
     8161 ttgatgagaa gtattataaa gctaagaaaa taaaaacaac agtgattgaa aatgcgtata
     8221 cagcaatgga tgtagataat ctcaagactg ttagtaaagg aaatgttatt ctatcaattg
     8281 gaagacatac gtctcaaaag cggtttgata agttgttaca tatctggaaa gaaatagtta
     8341 aaaagaatga tgggttaaaa ctgcggattg ttggggatgg tcctctattg gatgagaaca
     8401 aaaaattagc ccaaaaattg aatctgtccg actcagtagt gtttgctccg ccaactaaaa
     8461 aaattaatga ggaatatcaa aatgcatctt tatttttaat gacatctgac tatgaagcat
     8521 ttccaatggt tttgttggaa gctttgaaaa atggtcttcc ttgcattgcg tttgactgtg
     8581 atactggacc tagagatatt atcgttaatg gagttgatgg atttgttata ccaataaatg
     8641 atagtttgaa atttgtagaa aaaacgatag atgtcatgaa taatgaaaac ttaagatacc
     8701 aactaagctc gaatgcaaag gttaatgtcg aaaggtttaa tgaagaacat atttcaaaaa
     8761 aatggttgat taagttaaaa caattgcaat aacatcgacg ttaaaatcaa ggtataagat
     8821 gattataata acatcattca tggttctgtt gtttttattt acagataatt taaaattaaa
     8881 aaactttaga ataatattgt tttatttttt ttctctttgt ttcagtgtgt tagtttattt
     8941 tagacctgaa tacatgttaa atactgatta caaagaatat tataactatt ttaaatggat
     9001 taattttgat aatatttata acttatcgga cacaattggt ttcgaatacg gcttcggcta
     9061 tatagtcacg ttaataaaat atttttttga atctgaacgt gcttgttttt caggtattgc
     9121 ttttttatcg gtgtttatta gttataaagc tatattaaga ttaaacccca aaacgaccgc
     9181 attttctttt tcattatttt tattatcatt ttgtgtttat atttttttag gccaaataag
     9241 acaaggcata tcactttcgt taggcttact ggctatatct tatttgttgg aggataagcg
     9301 aaaacagttt ttattaaccg ttatcatagc ttcaagcatt catgtgacgg ccctaatact
     9361 aatattagct ccattcgtta aatattttag gataaagtat attttttatt ccttactact
     9421 atcgtttgct tttgttttta tagatgtaat aaaaccactg attataaccc tagcgcagtt
     9481 tattccgttt ggtagtttta taactggaaa aataatagct tatggaaata gcgaattttc
     9541 aaccaaagtg ggtttttctt ttattcaagt gtattatgtt ttactttcta cagttttata
     9601 tatcctagta aaaaaatatg aatataaaaa taattatatc ctcacattat gtaagatttt
     9661 tatggtcgga gtgattctta attttacatt taattcattt tctgttttac ttagacttac
     9721 ttattactat ttagcattag attgcatttt gatgggctat ctcttgaata tggcaaaaaa
     9781 tggatatacg aaaatattaa tatattgccc aacactaatg ctatttatat taaggtttta
     9841 tatgcaatgg agcgaacata tcaatggttg aacattgtag taaaaataaa aaaatactcg
     9901 ttgattgtag aatgattaat gcctctggaa taggtgttta tactcgtgaa attatcaaag
     9961 agttaaaaaa atatagatac ttgcagatcg agttattgct tcaagaagaa caacagttac
    10021 caattgatgt tgaagatatt ggatttaaaa tccactatat aaatttttct cgctatagta
    10081 ttaaaaacat cggtggtatg aagcatttac tgaatggctt tgatgtctat tttatgccat
    10141 cattatcgat accacctcta ttaaaaaaag gctgtttgat aatcacaaca gtacatgatc
    10201 tgtgtcctgt tgcattacgg aaattatttg gatccaaaaa agctgtagct tattgggctt
    10261 tgctattaat acaacttgtt tgttctaata agataatttc catttcaaga ttcactgcta
    10321 aagaaataaa taagtattac tttggtttat ttaaaagtaa attatatgtc attggcaatg
    10381 gtataagaaa tatttttaat ttggaattaa atagtgaaac agaaaattcc catgaagaat
    10441 atggtatttg cgtgggcaat attaagcctc ataaaaatgt tgtaccacta attgattacc
    10501 ttaagacaaa catcattaac aaaaaaatat attttatagg tgaaataaat gggttttcaa
    10561 cgaaaataaa taaaagtttg cttaacgatt tgcctgaaaa tatagttttt acagggagag
    10621 taagtgatca agaattacat aattattacc gtaatgctag tttttttata ttcccctcat
    10681 tatacgaagg ctttggtttg cctttgctag aggctatgaa ttataggttg cctatttttg
    10741 catcaaatat tgatgtattt aaggaagttg ctggtgaaac aattaattat tttgatccat
    10801 atacatttga tgctcttgca gatagaatta acaaattaaa aaagaacaag aaatctattg
    10861 aatcttatgc acgagttttg cagttatata gttgggataa taatgttgca agtctattaa
    10921 ggattatgaa tgaagaagat attgctcgta aataaatact atcatccaga cattggtggc
    10981 gtagaaactg ttgtacaaca gcatgctcaa ttattgaagt atgaatatag tgtaacagtg
    11041 ttgtgtatta gcaaagaatt ctcatggtat acaaaaaatg aattcattaa tggagttaaa
    11101 gtaatacgct gttcttcatt gggaacttat ttttctatgc cgttatcaat tacttttttt
    11161 ttgcattact tcattaatta tttaaaatca gacgtgatta ttaatcacgt tccgtttcca
    11221 ttaatggatt tagcattttt tatcattgat agattagtca aaagaaaaaa tatattattt
    11281 tggcacagtg atatagtaaa gcaaaaagca ttaaaaaaaa tattacgtcc gttcattata
    11341 aatactatta atcgaagcac tcagatttta actacatctc caaatctcaa agctaattca
    11401 gaagacatcg gtgaatatca gaaaaaaaca gatgtgttac cattatttat taattcaaat
    11461 gttataaatg gttatattaa aaatttaaac gcagaaaaaa aatatgactt tatatttttt
    11521 ggaagattat gttattataa aggagttgat attcttttag atgcagtaaa aattttgaaa
    11581 aataaaggag ctgaacctga aatttttatg gcaggtgatg gtgatttagt taattatatc
    11641 gaaaatgaaa ttattgaaaa taaaattaaa aatataactt ttattaaacg gtttttaaca
    11701 gaggaggaaa aatatcatta tctttcaatt tcaaaatgtt ttcttttccc atccgttgct
    11761 gcatccgaag catttggtat cactcagctt gaggcaatgt ctcttgggct ccctgtaata
    11821 aacacaaacc ttaatactgg cgttcctttt gtcagtttaa atggagttac ggggataaca
    11881 gtaactgcag gtaatcctga tgatttagct aatgcaatgc tgtctttgtt gcgcgatgat
    11941 gaaaaatatg aatcgttcaa gacaaattgt aaagttaggg tttctgagtt gtttgaggaa
    12001 aatgttgtga aaaataaact attcaaagta attgaagaat taaactgaga agttgaattt
    12061 tcactcatac tatattcatt aattattcgt atttatatac ttaacttatg tcaaataata
    12121 ttatctgtcc tgtgattatg gctggtggtt ctggtagccg tctatggcct ctttctcgtc
    12181 ttttttatcc aaagcaattt ctaaaattag tagatgattc aagtatgcta caagaaacaa
    12241 ttagtcgcct tggagatctt ccttgtagct tacctgttgt tatatgtaat gaacagcata
    12301 gatttattgt tgctgaacag cttcgaatga ttaataagtt aacgaataac attatattag
    12361 aacctgtagg gcgcaataca gccccagcaa tagctttagc agcaatgatc tctgagtctt
    12421 tttcttcttt agaagatccc ttacttttag tattagctgc tgatcatgat attaaaaatc
    12481 ataaatcatt tcgtgatgct gtaaggaaag ctattccttt tgcagaacaa ggtaaattag
    12541 ttacttttgg tattgttcca agtatggctg aaacaggata tggctatatt aagcgtggac
    12601 atgaaatttc tttggaaaat gatgaagtcg cgtatactgt ttcgaagttt tatgaaaaac
    12661 ctaatataag tgatgcccaa aaattcctcg cttctggaaa attttattgg aatagtggta
    12721 tgtttttatt tagagcttct cgttatttga gtgagttaaa taaatttaga ccagatatat
    12781 acttagcatg cgcatcttct actaaaaata taaataccga tcttgatttt attcgtgttg
    12841 atgaaaattc attttctaac tgcccagatg aatccataga ctatgcagtc atggaacaaa
    12901 cttctgatgc agtggttgtt cctatgaatg caggttggag tgatgttgga tcatggtctt
    12961 ccctatggga gattagtaaa aaaaatgaac aagggaatgt taatcatggt gatgttatta
    13021 atcacaatac tgagaatagt tatgtctatg ccgagtctgg tttggtgact accattgggg
    13081 taaaagactt ggttgttgta caaaccaaag atgccgttct tgttgcagat cgcaattctg
    13141 tgcaggatgt gaaaaaagta gtggagcaga ttaaagccca tggtcgttcc gaacatcaga
    13201 tgcatagaga agtttatcgt ccatggggta aatatgactc tatcgacgca ggcgagcgct
    13261 accaggtgaa acgcataacc gtgaaaccgg gcgaggggtt gtcagtacag atgcattacc
    13321 accgttcgga acactgggta gtggtagcgg gaacggcaaa agtcactatt gatggggtta
    13381 tcaaacttct tggcgaaaac gagtccctct atattccgca aggggcgaag cattgcctgg
    13441 aaaatccggg gaaaataccg cttgagttaa tagaagttcg ctccgggtct tatctcgaag
    13501 aggatgatgt ggtgcgtttt gcagatcgtt atggaagagt ctagttttgt acaactttca
    13561 ttttccctaa tgattctcga cctgaaataa ttctgccctg ttcatgtaaa ttatttgaat
    13621 accactctaa tttgagtgtt gaaaatgagt gtttaaaatg aaaaaattaa actgctttaa
    13681 agcctatgat attcgcggga aattaggcga agaactgaat gaagatattg cctggcgtat
    13741 tgggcgtgcc tatggcgaat ttctcaaacc gaaaaccatt gtattaggcg gtgatgtccg
    13801 cctcaccagc gaaaccttaa aactggcgct ggcaaaaggt ttacaggatg cgggcgtcga
    13861 tgtgctggat attggtatgt ccggcaccga agagatctat ttcgccacgt tccatctcgg
    13921 cgtggatggc ggcattgaag ttactgccag ccataatccg atggattaca acggcatgaa
    13981 actggtgcgc gaaggggctc gtccgatcag cggtgatacc ggactgcgcg atgtccagcg
    14041 cctggcagaa gccaacgact tccctcccgt cgatgaaaca aaacgcggtc gctatcagca
    14101 aatcaatctg cgtgacgctt acgttgatca tctgttcagt tatatcaacg ccaaaaacct
    14161 cacgccgctc aagctggtga tcaactccgg gaacggcgca gcgggtccgg tggtggacgc
    14221 tatcgaagcc cgctttaaag ccctcggcgc acctgtggaa ttaatcaaag tgcacaacac
    14281 gccggacggc aatttcccca acggtattcc taacccgctg ctgccggaat gccgtgacga
    14341 cacccgcaat gcggtcatca aacacggcgc ggatatgggc attgcctttg acggcgattt
    14401 tgaccgctgt ttcctgtttg acgaaaaagg gcagtttatc gagggctact acattgtcgg
    14461 tctgctggca gaagcgttcc tcgaaaaaaa tcccggcgcg aagatcatcc acgatccacg
    14521 tctctcctgg aacaccgttg atgtggtgac tgccgcaggc ggcaccccgg taatgtcgaa
    14581 aaccggacac gcctttatta aagaacgtat gcgcaaggaa gacgccatct acggtggcga
    14641 aatgagcgcc caccattact tccgtgattt cgcttactgc gacagcggca tgatcccgtg
    14701 gctgctggtc gccgaactgg tgtgcctgaa aggaaaaacg ctgggcgaac tggtgcgcga
    14761 ccggatggcg gcgtttccgg caagcggtga gatcaacagc aaactggcac aacctgttga
    14821 ggcgattaac cgcgtcgaac agcattttag ccgtgaggcg ctggcggtgg atcgcaccga
    14881 tggcatcagc atgacctttg ccgactggcg ctttaacctg cgctcctcca acaccgaacc
    14941 ggtggtgcgg ttgaatgttg aatcaaaagc caacgttgag ttactcgaaa gcagggtttc
    15001 tataatatta aatattctaa atatgtgact aatttaattg tgtgcttaaa attaggagtt
    15061 caatgtgaat tatatttctt tagaaacctt gatgaatgat attagagact caataaatct
    15121 attgagtaaa cataattttg atttagttgt aggcattcca agaagtggta tgataccagc
    15181 ctatctgatc agtctttatt tgaatattga cgtaaccgat gttaattctt ttatcctaaa
    15241 tacaccaatt caaagaggat cgactagaac atcaggaaaa cgcatatata acccacatga
    15301 tgcacaaagg attctcttag tcgatgatag cttttcaaca ggtaaatcga tgaggaatat
    15361 tttagattct ataccagtgg atttaaaaaa aaatattaaa acaatggttg cctatacatc
    15421 tgatgtaaat ggcgctggat tagatattta tatacgtcat gtttctcacc ccagattgtt
    15481 tgaatggaat atactcaatc acagcatcat tagcaatagc tgtttcgata ttgatggtgt
    15541 tttatgtgtc gatcctaatg agcttcagaa tgacgatggt gaaaactata taaaatttat
    15601 atgcgaggca gaacctaagt ttatacctaa gtttaagata aaatacttgg ttacaaaccg
    15661 tcttgaaaaa tacagagaca taactgaagc atggttgtta aaaaataaca tacaatatga
    15721 gaaattaatc atgttaaata tggcgacaaa agaagaaagg caatctgcag gaattcattc
    15781 cagacataaa gccgaatttt ataaacgttc cggttgtgat ttatttgttg aaagtgatat
    15841 taatcaggcg attgaaatta tgaaatatac cgggaagtat gtatattgta tagataataa
    15901 tagaatgtac tctcctagcg ccatacaata tttatctaaa aggccgcttg actttatgaa
    15961 tgatataatt ctttatttgc cacgaatttt atatcgtaga ttacccttag aaacaaagat
    16021 ggctataaaa aaaaggttaa aaccttaaaa agcatttcaa cctttttcaa tttacttatt
    16081 tttatttaat taaccgatta atgaagtttt tgacttcttt agtcggtaat aatgaaacta
    16141 taaacacgac gaaacatata atagtcaaaa taactagtga taagaaacta tggtccaagt
    16201 gtttttttaa tatatatatt atataatagc taatgaagcc tgctataaat aaaggataag
    16261 ttttcaaaat aagtttgtaa aagtttgatt ttatcacata catggttaaa gccatacatg
    16321 gaaaaaaatg aactaaatta gctatgaaat aatattttgc gagtgaaatg atattgtcat
    16381 taacgccaat cacaaatgca atacctgtca agatggctcc ttgtacccca agtaagacaa
    16441 ggataccagt acggccttgg gacataaata ttatacctgt ggtgctcaaa atgctttgaa
    16501 tgatagctgt aggcgctaac catacaagaa ttgatgaaga taaatgccat ttttctccaa
    16561 aaattatatt tattaccatt tcatttaaac aaagtagaga tataataaga ggaatggtta
    16621 taaaccaaat cgtatatact gtatttaaat atattttttc tacctcagca tgcttgtgtt
    16681 tatttttact taatataggg aataacgaac ggtttacaat aaacgttatt gaagtaagtg
    16741 ggaaaagcat aattctatat gctagattat atgcacctaa tatagttgct gacatgtact
    16801 tacctatgag gaaactatct aaattacgag caaagtaatt aatgaaatta aaaagagata
    16861 gctgatagct gaaagaaaat attgatttgg tatttttaaa tatattctca attttgattc
    16921 taggactcca tgaacttaaa taccaaaaca aacctgaaga taacaacgtg ctaacaatag
    16981 attgagtgac taaactatat accccaaagt tgagatatgc cattgctata gcaatgatta
    17041 aagcagagcc aaaagaaaaa atttctattt ttgagatggt ttcaaatttt gactctcttt
    17101 caagaagtga taagtgaaca gatgttgccc caagtaagaa aaaattaata gatagcaatg
    17161 ataaaacagg ttttaattta ggtacgtcgt ataattcaga aaaataagat gagctaaata
    17221 aaattgcagt tcctactatt atgcctaata ataaatttag ccaaaagata gcagatttga
    17281 gactttcgtc gatcgaatct ctctggacta tagcagctga tgttcctaag tcacgaaaaa
    17341 ggattgcgaa attggttacc acggtggcca tagccataat accataatct tctggtgcaa
    17401 ttaatctggc aagataaatc atacttataa gctgtgttgc tattttaaat aattgtgata
    17461 tagcgttcca ctttaagttg ttaaaaatgc tcattattag ttctctagag tgacctataa
    17521 aaagtaaaaa taaaaatcca acacccttag tattcttaca taaaataaaa aactagaaaa
    17581 gctaattata ctgaaaggta acatgagtta tagtttatta ttttttaaaa taagtaaact
    17641 tgaatctcgc atacatcgcg atgaacatcc cctgacagga gaaaacaatg tcaaagcaac
    17701 agatcggcgt cgtcggtatg gcagtaatgg ggcgcaacct tgcgctcaac atcgaaagcc
    17761 gtggttatac cgtctctatt ttcaaccgct cccgtgaaaa gacggaagaa gtgattgccg
    17821 agaatccagg caagaaactg gttccttact atacggtgaa agagtttgtt gaatctctgg
    17881 aaacgcctcg tcgcatcctg ttaatggtga aagcaggtgc aggcacggat gctgctattg
    17941 attccctcaa accatatctc gataaaggcg acatcatcat tgatggtggt aacaccttct
    18001 tccaggacac cattcgtcgt aatcgtgagc tttctgccga aggctttaac ttcattggta
    18061 ccggtgtttc cggtggtgaa gaaggtgcgc tgaaaggtcc ttccattatg cctggtgggc
    18121 agaaagaagc ctatgaactg gttgcaccga tcctcaccaa aatcgccgca gtggctgaag
    18181 acggtgagcc atgcgttacc tatattggtg ccgatggcgc gggtcactat gtaaaaatgg
    18241 ttcacaacgg tattgaatac ggtgatatgc agctgattgc tgaagcctac tctttgctta
    18301 aaggtggctt gaacctttcc aacgaagaac tggcgcagac ctttaccgag tggaataacg
    18361 gtgaactgag cagctacctg atcgacatca ccaaagatat cttcaccaaa aaagatgaag
    18421 acggtaacta cctggttgat gtgatcctgg atgaagcggc taacaaaggt accggtaaat
    18481 ggaccagcca gagcgcactg gatctcggcg aaccgctgtc gctgattacc gagtctgtgt
    18541 ttgcacgtta tatctcttct ctgaaagatc agcgtgttgc cgcatctaaa gttctctctg
    18601 gcccgcaagc acagccagca ggcgacaagg ctgagttcat cgaaaaagtt cgtcgtgcgc
    18661 tgtatctggg caaaatcgtt tcttacgctc agggcttctc tcagctgcgt gctgcgtctg
    18721 aagagtacaa ctgggatctg aactacggcg aaatcgcgaa gattttccgt gctggttgca
    18781 tcatccgtgc gcagttcctg cagaaaatca ccgatgcata cgccgaaaat ccgcagatcg
    18841 ctaacctgct gctggctccg tacttcaagc aaattgccga tgactaccag caggcgctgc
    18901 gcgatgtcgt cgcttatgcg gtacagaacg gtatcccggt tccgaccttc gccgctgcgg
    18961 ttgcctatta tgacagctac cgcgccgcag ttctgcctgc gaacctgatc caggcacagc
    19021 gtgactattt cggtgcacat acttataagc gcattgataa agaaggtgtg ttccataccg
    19081 aatggctgga ttaatctgat ttaaatcaat taatcaatgc aaggcccgga gaaacccttc
    19141 gggctttttt attatacaaa gcggcaggtt atggcctttt tttataatta atggttaaaa
    19201 aagcgatata atacagagtc gcacagcagg atcgctgcct tgacagttca tctacatcag
    19261 cgttaaaaat cccgcagtag atgaagctgt ggtggtggat taatgaccac tctaaatgtt
    19321 taaccggaag aagtcagagc taatgaaaat aacaatttca ggaacaggtt atgttggtct
    19381 ttcaaatggt attctgattg cgcaaaacca cgaagtggtt gcactggata tcgttcaggc
    19441 caaagtggac atgcttaaca agaagcagtc accgattgtt gataaggaga ttgaagagta
    19501 tctggcgact aaagatctca atttccgcgc tacgacagat aagtatgacg cgtataaaaa
    19561 tgccgattac gttattattg ccacgcctac cgattatgat ccgaaaacaa attattttaa
    19621 tacctcaagc gtggaagcgg tcatccgtga tgtgacagaa attaatccca acgcggtaat
    19681 ggtgattaaa tctacaattc cggtaggttt caccaaatca attaaagaac gtctgggtat
    19741 cgataacctt attttctctc cggaatttct ccgtgaaggt aaagcccttt acgataatct
    19801 ccatccttca cgtattgtca ttggtgagcg ttcagaacgc gcagaacgtt ttgctgcgtt
    19861 gttacaggaa ggcgcgatta agcaaaatat ccctacactg tttaccgact ccactgaagc
    19921 agaagcgatt aaacttttcg ctaataccta tctggcgatg cgcgtagcat actttaatga
    19981 actggatagc tatgcagaaa gtttaggtct gaatactcgc cagattatcg aaggcgtttg
    20041 tctcgatccg cgtattggca accattacaa caatccgtcg tttggttatg gtggttattg
    20101 tctgccgaaa gataccaagc agttactggc gaactaccag tctgtgccga ataacctgat
    20161 ttcggcaatt gtcgatgcta accgcacacg taaagatttt attgccgatg ccattttgtc
    20221 acgcaagccg caagtggtgg gtatttatcg tctgattatg aagagcgggt cagataactt
    20281 ccgtgcgtct tccattcagg ggattatgaa acgtatcaag gcgaaaggcg ttgaagtgat
    20341 catatacgag ccggtgatga aagaagactc attcttcaac tctcgcctgg aacgagatct
    20401 cgccaccttc aaacaacaag ccgacgtcat tatttccaac cgtatggcag aagagcttaa
    20461 ggatgtggca gacaaagtct acacccgcga tctctttggc agtgactaac atcctgttat
    20521 cagggcgatt ttcgccctga ttctcttatg ttccctttgt aataattcat tatttttatc
    20581 atttatccta tagcattcat ggcgattatc gctaaactat ggcgacttaa aattatttcg
    20641 tccgttaggg taatgatgag agtagaaaat aataatgttt ctgggcaaaa ccatgacccg
    20701 gaacagattg atttgattga tttactggtg cagttgtggc gcggcaagat gacaattatc
    20761 atctctgtca ttgtggctat tgccctggct atagggtatc tggccgttgc caaagaaaag
    20821 tggacttcca cagctatcgt tactcaacct gatgtggggc aaatcgctgg ttataccaac
    20881 gcgatgaatg tgatttacgg tccggctgta ccgaaagtct ccgacattca ggcttcgctt
    20941 atcggacgtt acagcactgc attctcagca ttagcggaaa cgctggataa ccaggaagaa
    21001 gcagaaaagc tgaccattga gcctaccgtt aaaaatcagt cattaccttt agcggtgtct
    21061 tatgttggtg aaacacctga aggtgctcag aagcagctgg cgaagtatat ccagcaagtt
    21121 gacgaccagg taaacgtaga gctggaaaaa gacctgaaag acaacatcgc gctgcgtatg
    21181 aaaaacttgc aggactcttt aagaactcag gaagtagtcg cgcaagagca gaaagatctg
    21241 cgtatccgtc agattcagga agcgttgcag tatgcgaatc aggcgcaggt gacaaaaccg
    21301 caaattcaac agactggcga agatatcacg caagatacgt tgttcctttt ggggagcgaa
    21361 gcgctggagt cgatgattaa gcatgaggcg acccgtccgt tggtgttctc gccaaactac
    21421 tatcagactc gtcaaaacct gctggatatc gaaagcttaa aagttgatga tcttgatatt
    21481 catgcttacc gttatgtgat gaaaccgacg ttacctattc gtcgcgatag tccgaaaaag
    21541 gcaatcacct tgattctggc gatgctgctg ggcggcatgg ttggcgcggg gattgtgctg
    21601 gggcgtaatg ctctacgcaa ctacaacgcg aaataatctt ttcggtttta aagaaaacgg
    21661 gcagggtggt gacaccttgc ccgttttttt tgccggatgc gacaacaaca tcgcatccac
    21721 ttaccccgca actcactgat gccgtttacg caggttctca attaccgtcg ttaaatccag
    21781 atcctgatcc tgcaacagca ccagcaggtg atacatcaag tcagatgcct cgttggtcag
    21841 ctcaaagcgg tcatgtaccg ttgctgccag tgcggtttcc acgccttctt cacccacttt
    21901 ctgcgcaatg cgcttggtgc cgctggcata cagtttggcg gtgtaggagg tttccgggtc
    21961 ggcagattta cgttcggcga gcagttgttc cagttgataa aggaacagcc actggtgagc
    22021 ggtgtcgccg aaacagctgc tggtgccttt gtggcaggtt gggccgatgg gattcgccag
    22081 taccagtaac gtgtcgttgt cgcagtccgg ggcaatactc accacattga ggaaattgcc
    22141 cgacgtttcg cctttggtcc acagtcgctg tttagtgcgg gagaaaaagg tgactttgcc
    22201 gctttcgatg gttttgtcta aggcttccgg gttcatatag cccagcatta acacttcacc
    22261 ggataccgcg tgctgcacaa tcaccggcat aagtccgtcg gttttttccc agtccagttc
    22321 gcgacgttgt tgttctgtta acatatcctg atctccacgc cctgtgttgc caggtacgct
    22381 tttaattcac caatattgat tatttgtttg tggaatacgg aagcagccag cgcgccgtca
    22441 acgtcggcat cgcggaaggc ttcgaggaag tgttccatgg tgcccgcgcc accggaggca
    22501 atcagcggga cgtggcaaac ttcacgcact tttttcagct gctcgaggtc gtaaccgtta
    22561 cgcacaccgt cctgattcat catgttgagg acgatttctc cggcaccgcg tttttgcact
    22621 tcctgtaccc agtcgagtgt ttcccactga gtgacgcggg tgcgggtttc gtcgccggta
    22681 tattgattca catgatattt accggtttcg ccgtcgtacc aggtatcaat accgaccaca
    22741 atacactgca cgccaaagcg atccgccagg cgagtaatta acgtcggatc cgccagcgca
    22801 ggagagttga tggaaatttt atccgcgcca aaggaaagaa ttttggcggc gtcatccaga
    22861 gacttaatcc cacccgccac acaaaacgga atgtcgatca cttccgccac gcgagatacc
    22921 cagcttttat ctaccacacg gccatcgctg gaagcggtga tatcgtagaa caccagttcg
    22981 tctgcacctt cctctgcgta gcgttttgcc agcggcacga tatcgccaat gatttcatgg
    23041 ttgcgaaact gtacgccttt caccacctga ccatcacgaa cgtcgagaca tggaattatg
    23101 cgttttgcca gcatgcgatg gcctccttca cggtgaattt accttccagt aatgcacgac
    23161 caactattac gccgcgcacg ccagtgccac gcagggccgc cacatcatca atgtcgccaa
    23221 tgccgccgga tgactgaaat gccacctgcg gatatctggc gcacacttct tcatataaag
    23281 agacgttaga acctgccagc gtgccgtcgc gcgagatatc ggtacacagc acatgtttca
    23341 ggccgacggg cagataggtt tccaccagtt gttccagtga aacgcccgag ttctcttgcc
    23401 agccgctgac tgccacctgc ttgttgcctt gctcgtcaat acggacatcc agcgccagca
    23461 ctaaggcatc ggcactgaaa cgttcaaacc agcctttcac cctttctggt gatttcaccg
    23521 cggtggaacc gaccaccaca cgcgcaacgc ccgcttccag taacgccgcc acgtcatctt
    23581 cgctacgcac gccgccgcca acctgcaccg gaacgttaac tcccgccacc agggttttaa
    23641 tcagcgggat ttgacgttta gccggatctt ttgccccggt cagatccacc agatgcaaca
    23701 cttcggcacc ctgcgcggcg taatcctgca atcgcgacag cgggtcgtta ccgtaatcgc
    23761 gctgtttgcc gtaatcgccc tgatggagac gcaccacggt gccgtcgatt aaatctaatg
    23821 ccggaataat catcacatct ccaggaaatt tttcagcaac ttagcgccag cggcaccaga
    23881 acgctccggg tggaactgca cgccgtagaa gttatctttt tgtaccgccg cggtgaacgg
    23941 ttcgccgtag ttacactggg cgatggtcca cggattgacc ggcattgcgt aactgtgaac
    24001 aaagtaaaag tacgcgccgt catcaatccc ctgaaacagg cggttgcctg cctgcgggta
    24061 aacgcggttc cagcccatat gtggcagtgg cagaccaaag tcggtcattt tcggcacgtc
    24121 ttcgtcgatg atgcccagca aatcgacgcc gttgctctct tcgctgcgcc gccccagcag
    24181 ttgcatccct aagcagatgc ccagcaccgg ttgggtacag gctttgatga gatcaaacag
    24241 ctcgcgctca cgcacctgat ccatcgctgc ttgtgcagtg ccaacgccgg gtaaaaatag
    24301 tttatcggcc agcaacacga cgtccgggtc acggctgact ttgggttcat aaccgtgacg
    24361 cgcaatggca gacttcaccg agttcaggtt ggcgcagccg gtatccagga tcaccacgtt
    24421 cattacagca ttcctttcga cgagggcagg gtgtcgcctt ccacgcggat ggcctggcgc
    24481 agggtgcgac caaaggcttt aaagagactc tctacacggt gatgatcgtt tttacctttg
    24541 gttttcaggt gcaacgtcac gcccatggtg tatgagagcg aacggaagaa gtgctcgatc
    24601 atttcggtgc tgagatcgcc cacgcgctgg taggtaaatt cggctttata ttccaggtgc
    24661 gggcgaccag agatatccag tgcacagcgg gcaaggcatt cgtccatcgg cagcacaaaa
    24721 ccaaagcggc aaataccgcg tttatcgccg agggcaattt ttaacgcttc gcccagcgcc
    24781 aggccggtat cttcgacggt gtggtgatcg tcgatataga ggtcgccttt gacgttgact
    24841 tccatgcgga aaccgccgtg ggtggcgatc tgatccagca tgtgatcaaa gaagccgaca
    24901 ccggtgttaa tcttgctgcc accttcgcga tccagccaca cctggacatc aatttgcgtc
    24961 tctttggtgt tgcgcactac atgggcgtaa cggtctcgtt tagtgagttg ctcgccaatc
    25021 atcggccagt tcagggtttc gcggtcgtag cgtaaaccat taatgcccat gttttccgcc
    25081 agttgaatgt cggtcgcgcg atcgccaatc acataactgt tagcgcgatc catcgcttgc
    25141 tcagccagat aacgttccac cagttttact ttcggcttac ggcagtcgca ctcatcggcg
    25201 ggcaggtgcg gacaaatcag cacttcatca aactgtacgc cttgcgaggt gaagatctgc
    25261 atcatcaggt tgtgcgggcc atcgaaatcc gcctgtggga aactttgtgt tcccagacca
    25321 tcctgattag tgatcatcac cagcttgtag cccgcttttt gcagcttcag cagttccggg
    25381 atcacgcccg gttcaaaggc gagtttatca aaacggtcca cctgaaaatc actcggcggt
    25441 tcgctaatca gggttccatc gcgatcgata aaaagatact tctgactcat caaacttgct
    25501 ccgcacgtaa ggcgtcaatg acgcgctggc tttcttcacg ggttccgacg gtaattcgca
    25561 ggcagccgct taaagagggt tgtttattct gatcacgtaa gataatgccc tgatcccaca
    25621 aagatttaaa cactgcactg gaggctttaa agcgcgccag aatgtagttg gtttcagagt
    25681 caaaaacctg ctccacgcag gggatctctt tcagtgcggc aatcaggtat tcgcgttctg
    25741 caataatttg cgctacccgt tcgcgcatgg cgacgattcc ctgcgggctt aacgcctggg
    25801 ccgcaatgtc ggcaaccggc gtcgagagcg ggtagggggc gatcactttc atcagcaggt
    25861 tgatgacttc ttcgtttgcc agcgtaaacc cgcaacgaag gcccgccaga gcaaaagctt
    25921 tcgacagtgt gcgcaaaata gccaggtgcg gatattccgc cagccagcca gccagcgatg
    25981 cctgcgggca aaactctata taggcttcat cggcaaccac aatcgcctta ccgcgggtta
    26041 actccagcag ggtgcgaaaa tcctgcggat tgatcagttg cccggtcggg ttgttggggc
    26101 tgcaaacata gaccactttt acgccgtcca gcttgtcgga aatgccctgt aagtccagtt
    26161 gccagttgtc cagcgtcggc actgtgcggc actcgacgcc aatcgtttcg gcgctgacgc
    26221 tgtacatgcc gtacgttggt gggcagtaga ggatggagtc tttacccggt tcgcaaaaag
    26281 cgcggatcag cagttcaata ccttcgtccg cgccacggct gaccagcacc tgttccggtt
    26341 ttacgcctgc atattgcgcg taattttcaa tcaccgcttt cggctgacat tccgggtagc
    26401 ggttgagcgt ttgctgagta agctgaaact ccacggctgt gggatattcg ttggcgttca
    26461 gccagacgtc gccattaccg cccagacgac gcgccgactg atacggcgtc aggttgcgga
    26521 cgttttcacg cgctaaatcg gtaatagtca cggtgctcat gcttgctcct taagggcgtt
    26581 aacacgcaaa gtaacggcat ttttgtgggc ggtcaggcgc tcggcggcgg ccagtgtttc
    26641 tatggttgaa gccagcgcgg agaacccctc tttcgacagt tcctgtacgg tcatgcgctt
    26701 ctggaaatct gccagcccga ggctggaaca ggtggcggtg taaccgtaag tcggtagaac
    26761 gtggttggtg ccggaggcgt aatcacctgc cgattccggt gaccagtcac caagaaatac
    26821 cgaaccggcg ctggtgatgc tatcgaccag ttcacgggcg ttgcgggtct gaatgatcag
    26881 gtgctccggg ccgtactggt tggagatctc cacgcactgc gctaaatctt tagtcacgat
    26941 caggcggctg gcgttcagtg cctggcgggc ggtttcggca cgcggcagtt ctgccaactg
    27001 gcgttcgacg gcctcggcaa cgcgacgcgc catatcagca gcgggcgtca gtaaaatcac
    27061 ctgtgagtcc gggccgtgtt cagcctgaga gagcaaatca gaagccacga aatccggcgt
    27121 agcgccgctg tcagcaatca ccagcacttc cgacgggcct gcgggcatat cgatcgccgc
    27181 accgtccaga cgctggctca cctgacgttt cgcttcggtg acaaaggcgt tacccggccc
    27241 gaagattttg tccacttttg gcacagattc cgtaccaaac gccagtgcgg caatggcctg
    27301 tgcgccgccg acgttaaaca cgtcctgcac accgcacagc tgcgccgcat aaaggatctc
    27361 atcggcaatc ggcggcggtg agcacagcac cactttttta cagcccgcaa tactcgccgg
    27421 agtcgccagc attaataccg ttgagaagag cggggcggag ccgccaggaa tatacaaccc
    27481 aactgaagcg actgggcgcg tgacctgctg gcaacgcacg cctggctgcg tttctacatc
    27541 taccggcggc agtttttgcg cagtgtggaa ggtttcaata ttcttcactg ccaccgccat
    27601 cgcctgtttt agctcgtcgc tcaggcgttc gctggcggcg gcaatttcct cagcagacac
    27661 cttcagtgcg gtaaccgtgg ttttatcaaa cttcgcgctg tattcccgca gggcctcatc
    27721 gccgtgtgct ttcacgttat cgagaatatc gttaacagtg cgggtaatgc tttcagaagc
    27781 ggagatcgcc gggcgcatta acagctggcg ttgttgctcc gcagtacagc tattccagtc
    27841 aatgattgtg ttaaagctca tggcgatcac tccatcatct tctcaatcgg caggaccagg
    27901 attgaactgg cacccagcgc tttcagtttt tccatcgttt cccagaacag ggtttcgcta
    27961 ctgaccatgt gcatcgctac gcgctgttga tcacccgcca gcggtagaat agttgggcgt
    28021 tcggcacctg gcagcagggc gatgacttca tccagacgtt cggtcggtgc gtgcatcatg
    28081 atgtattttg attcacgcgc ctggataaca ccctgaatac gggtcagcag tttgtcgatc
    28141 agttgctgtt tggattcttc catttcgcca tcgcgttgta tcaggcaggc tttcgagcga
    28201 tagataactt cgacttcgcg caggccgtta gcttccagcg tggcaccggt ggaaaccaga
    28261 tcgcaaatcg catccgccag tccggcacgc ggggcgactt caacagaacc gttcagtaag
    28321 caggatttaa aagagatacc tttctggtcg agataacgct tgagcaggtg aggataagag
    28381 gtggcgatac gtttaccgtt taaggagagc gggccatccc aggcttcatc aaccggcgtt
    28441 gccagtgaaa gtcggcagcc gccgaaatcc agacgacgca gggtaaagta gcgtggatct
    28501 tcaccctggg cgcggcggtt aagcagctct tcttccagca cgttttcgcc gataatcccg
    28561 aggtcaacca cgccgtccat taccagaccg ggaatgtcgt cgtcacgcac gcgcagaata
    28621 tcaatcggca tgttttctgc catcgcgatc aggcgctggg tgtgaagatt gattttaatg
    28681 ccacagcgcg ccagcaattc gcgtgagtca tcacttaaac ggccggattt ctgcatagct
    28741 atgcgtaaac gagtgttgtc tgtcattttc ttattcctct ttaaacctgt ctgaaccgtt
    28801 atcaaccgcg caataaaaaa gcccccggaa ggtgatcttc cgggggcttt ctcatgcgtt
    28861 catgcaccac tggaagatct gaatgtcttc cagcacacat cgcctgaaag actagtcagg
    28921 atgatggtga tgatggtggt gtttaaattg aacgcgtgtc ataaaagtct ctgtgaatgt
    28981 ttattcaact gatgtctttt aacctaaacc actttcacgt tagaaagcaa gggctttttt
    29041 atatatttta tggcgatgga tttgtttaat gaatgagcgg ggaaaggagg gggctaagag
    29101 gactgtcctc taagctgacg gcaccaaaaa tagcgaagcc tggattttcg tctcactgac
    29161 aataccttga tctacaaact aattaataaa tagttaatta acgcccatca ttgtacaatg
    29221 aactgtacaa aagaggagat tgacatgcgt acaattagct acagcgaagc gcgtcagaat
    29281 ttgtcggcaa caatgatgaa agccgttgaa gatcatgccc cgatccttat tactcgtcag
    29341 aatggagagg cttgtgttct gatgtcactc gaagaataca actcgctgga agagacggct
    29401 tatctactgc gttcccccgc taacgcccgg agattgatgg actcaatcga tagcctgaaa
    29461 tcaggcaaag gaacagaaaa ggacattatt gagtgaaact aatctggtct gaggaatcat
    29521 gggatgatta tctgtactgg caggaaacag ataagcgaat tgttaaaaag atcaatgaac
    29581 ttatcaaaga tacccgcaga acgccatttg aaggtaaggg gaagccagaa cccctgaaac
    29641 ataatttgtc aggtttctgg tcccgacgca ttacagagga gcaccgtctg gtatacgcgg
    29701 ttaccgacga ttcactgctc attgcagcat gtcgttatca ttattgaaca gattcattca
    29761 tagaatgaat tgtcagtttt gatacgctag cgtagcctta tagatctaag gtgtatcagg
    29821 agataacgga tgaaaaaggt cgcaattgtc gggttagggt ggttaggcat gccgctggcg
    29881 atgtcacttt cagcgcgagg ctggcaagtc accgggagta aaaccacaca agatggtgtc
    29941 gaagcggccc gaatgagtgg cattgatagc tatctgcttc gcatggagcc tgagttagtt
    30001 tgcgattctg acgatctgga tgccctgatg gatgccgatg cactggtcat tacgcttccg
    30061 gcacgtcgta gcggctccgg cgatgagttc tatttacaag cggtacaaga gttagtggat
    30121 agcgcgctgg cccatcgtat tccccgaatt atttttacca gctcaacatc tgtctatggc
    30181 gatgcgcaag gcatgttgaa agaaactacc ccgcgtaatc cggtaaccaa cagtggacga
    30241 gtattagaag aactcgaaga ctggctgcac aatttacccg gtacttcggt cgatattctg
    30301 cgtcttgcgg gcctggtcgg accggggcgt catcccggac gcttctttgc cggaaaaacc
    30361 gcgcctgatg gtgaacatgg tgttaattta gtccatttag aagatgttat tggcgctatc
    30421 actctgttgt tacaggcacc taaaggcgga cacatctata atatatgtgc gccagctcac
    30481 cctgcgcgta atgttttcta tccgcagatg gcccgtttac tggggctgga acctccgcag
    30541 ttcagaaata gtctggacag cggcaaaggt aagattattg atggcagtcg gatttgtaat
    30601 gaactgggat ttgaatacca gtatcccgat ccgctggtaa tgccgctgga gtaaacgatc
    30661 acgccagcag gacgccgcat acactgcaag ggggcgtgta tgaaaccact gctggatgtg
    30721 ttgatgatcc tcgatgcctt agaaaaagaa ggcagttttg tggcggcgtc ggccaaactc
    30781 tacaagacgc cgtccgctct gagttacacc gttcacaagc tggaaagcga ccttaatatt
    30841 caattgcttg atcgtagcgg tcaccgcgct aaattcaccc gcaccggaaa aatgttatta
    30901 gagaaagggc gggaagttct gcataccgtg cgggaactgg aaaagcaggc gatcaaactg
    30961 catgaaggct gggaaaacga gctggtgatt ggcgtggacg acacgtttcc tttttctctg
    31021 cttgcgccac tgattgaagc tttttatcaa catcatagcg tgacgcgcct gaagtttatc
    31081 aatggcgtac tcggtggttc atgggatgcc ctgactcagg ggcgagcgga tattattgtt
    31141 ggcgcgatgc atgagccacc atcttccagt gagtttggtt tttcacggtt gggcgatctg
    31201 gaacaagtct ttgccgtcgc gcctcatcat ccgttagccc tggaagaaga gccgttaaat
    31261 cgtcgtatta ttaagcgata tcgggcgatt gtggtggggg atactgcgca ggcaggcgct
    31321 tctacggcct cacaacttct cgacgaacaa gaagccatta ccgttttcga ttttaaaacc
    31381 aaactggagc tgcaaattag cggcctcggc tgcggctatt taccccgtta tctggcgcaa
    31441 cgttttctcg atagtggcgc gttaatcgag aagaaagtgg tcgcccaaac tctctttgaa
    31501 cccgtctgga ttggctggaa cgaacagacc gcaggccttg ccagcggctg gtggcgagat
    31561 gaaattttag caaatagtgc gatcgccggt gtttatgcaa aatctgatga cggaaaatca
    31621 gccatttaaa gaaaaattat tatgacaagc ctctcattct cttgtcattt cccccccatt
    31681 taggcacaat gcgccgctgt caaaaaatga ctaaaaaccg acgtttcatc agcgtcggtt
    31741 attttttgct tcaaaccaat cattcatacc aagaggccgg gcttcgtacc ggatagatat
    31801 ttactaaaaa tcgacagttg ttgtcgctga ggaatccaaa aaaatggggc aattttttgc
    31861 ttacgcgacg gttatcaccg taaaggagaa tgaccatgtc gcataacgtt actccaaaca
    31921 cctctcgcgt ggaattgcgt aaaacgctta cgttagttcc ggttgtaatg atgggtcttg
    31981 cctatatgca gccgatgacg ctgtttgata cttttggtat cgtttcaggc ctcacggatg
    32041 gtcatgtgcc gacagcctat gcgttcgcat tgattgcgat cctgtttacg gctctgagct
    32101 acgggaagct ggttcgccgc tatccttctg ctggctctgc atacacttac gcccagaaat
    32161 ccattagccc aactgtcggc tttatggtgg gttggtcttc tctgctcgac tatctgttcg
    32221 cgccgatgat caacattctg ctggcgaaaa tttattttga agctctggtg ccttccatcc
    32281 catcgtggat gtttgtggtg gcgctggtgg cctttatgac cgcctttaac ctgcgtagtc
    32341 tgaaatccgt agcgaacttc aacactgtaa tcgtcgtgtt gcaggtagtg ctgatcgcgg
    32401 tgattctggg catggttgtt tatggcgtat ttgaaggtga aggcgctggt acgctggcga
    32461 gcactcgtcc gttctggtct ggcgatgcgc atgttatccc gatgattacc ggggcgacaa
    32521 tcctgtgctt ctcctttacc ggctttgacg gcatcagcaa cctgtcggaa gaaaccaaag
    32581 atgcagagcg cgtgatcccg cgtgcgattt tcctgaccgc gctgattggc ggcatgatct
    32641 tcatctttgc aacttacttc ctgcagctgt acttcccgga tatctctcgc tttaaagatc
    32701 cggatgcgtc acagcctgaa atcatgctgt acgtggcagg taaagcattc caggttggtg
    32761 cgctgatctt ctccaccatt accgtactgg cgtccggtat ggcggcgcac gcaggtgttg
    32821 cgcgtctgat gtacgtaatg gggcgtgacg gcgtattccc gaaaagcttc ttcggttatg
    32881 tacacccgaa atggcgtact ccggcgatga acatcatcct ggttggcgcg attgccctgc
    32941 tggcaatcaa cttcgacctg gtaatggcta cggcgctgat taactttggt gcgttggtgg
    33001 cgttcacctt cgttaacctg tcggttatct cgcagttctg gatccgtgag aagcgtaata
    33061 agacgctgaa agatcacttc cagtatctgt tcctgccgat gtgtggtgcg ctgaccgttg
    33121 gtgcgctgtg ggttaacctg gaagaaagct caatggttct gggtctgatc tgggcggcta
    33181 tcggtctgat ttacctggct tgcgtcacca agagcttccg taacccggtt ccgcagtacg
    33241 aagacgttgc ataatcatct tttctaataa taaaccggag tcgaatgatt atttggctcc
    33301 ggttttttta ttctttttta tcgaaatcct cattaataac catttgttct aatttagaga
    33361 atttggttat tggtctgcat tccaccagtc atgaataatt tccctattaa cattcatctg
    33421 gttaattaat ttatgttttc aatgatatta agcgggctaa tttgtggtgc tctgctggga
    33481 tttgtcatgc agcgtggggg tttttgcgtt aattcaggcg ggcctactga cttacgaagc
    33541 cggggcgttc ccgtggcttg gtactgttat aggtgggtat atcttcgggc tgggaattgt
    33601 tctggcgggt ggatgtgcca ccgggacctg gtatcgcgcg ggtgagggat tgatcggcag
    33661 ttggatcgcg cttttcactt atatggtgat gagtgcggtg atgcgttctc cacatgccag
    33721 tggtttaaat caaaccttgc agcactacag tactgaacat aactctattg ctgagacttt
    33781 taatttgtct gtgtggccgt tggttaccgt tttgctggtg ataacgctct gggtggtgat
    33841 gaaagagttg aagaagccaa aactcaaagt cgcgacctta ccgccgcgcc gaaccgggat
    33901 cgctcatatt ctgtttgaaa aacgctggca tccctttgtc actgctgtac tcatcggttt
    33961 gattgcgctt ttagcctggc ccctgagtga agcaaccgga cgcatgtttg ggttaggaat
    34021 cacttcccca acggccaata ttctgcaatt tctggtcgca ggtgacgtga aatacattaa
    34081 ctggggcgtt ttcctggtgt tagggatctt cgtggggtca tttattgcag ccaaagcgag
    34141 ccgtgagttc cgcgttcgcg cagctgatgc acaaacaaca gtacgtagcg ggttaggtgg
    34201 tgtgcttatg ggcttcggtg ccagcattgc aggtggttgc tctatcggta atggactggt
    34261 catgactgca atgatgacct ggcagggctg gattggcctt gtatttatga ttctcggagt
    34321 ctggactgcg tcctggcttg tgtatgtacg accacagcgt aaggcacgac tggcgactgc
    34381 tgcggcaaat taagtaaggt gtaaagatgg cgattaaaaa gctggatgtg gtgacgcagg
    34441 tctgtccgtt tccactcata gaagcaaaag cagcactggc agaaatggcc agcggcgatg
    34501 agttggtaat tgagtttgat tgcacccagg caactgaagc aatcccacag tgggcggcag
    34561 aagaaggaca tgccatcacc gattatcagc agattggcga tgcagcgtgg agcatcaccg
    34621 ttcaaaaagc ctgactcaac attgtcctcc gccgtaccag cggcggaggc ttcaaattag
    34681 acgatctctt ccgcgtactg ccaaagtgct tttaacagcg ccactttctc tttgtcatcg
    34741 gcatattgtt gtaccagcat ctgcaattca tcagcataac cctgcaaaaa ctctggcgtg
    34801 aatacctggc ggcggtgctc cagccagcgt tgctgctcgg cataatccag cgtccccggg
    34861 aagttgcgtg cccgataatt gaacaacagc ttttcaatcc gtttatcaac aaaagtgata
    34921 tccagtgccg gtaaattacg cggctcggtt tccagcacaa ttttcattgc tgcacgatct
    34981 gcgtcactga aaaagccgtt ataaagctgt gcatccacgt tatctgaagg cgtaaacggt
    35041 tcggcttccg cgaatatcgc caccactttt tcgcgcactt gcggattttc acgcagaatt
    35101 ttcaggttat cgaggcaatg ctgacgatta attcccagtc ggtcggcatc ttccgggcgt
    35161 agcgtattcg cctgggccag caccggacat ttattgatat gcaccagctt aaccggaacg
    35221 gcggcgttat cgccaagatc ggcttttgca gtatataaac gctcgcgcaa tgtgtcgcta
    35281 tccagttcca gtaatggcga aatgtctcct gccaaatcca ccataattac ggcattgcga
    35341 ttttctggat gccacgccag cggtgccacc cagctggtat tgccgcgcca tgccccaaac
    35401 attccggaaa cgtgaaccag gggtttcatc tgcggaacat caatcaacgc catcagtttg
    35461 tgtttattac gatgggtaaa gagataatca aacagacgtg gctgacgcgt ttttaccagt
    35521 ttcgccatcg caatagtggc gtacacatca gccatcgcat cgtgggcgtt gctatgttca
    35581 ataccattcg ctttggttaa atgctcaagg cgaaagctcg gtagaccgtc atcattttca
    35641 ggccagttta ttccttccgg gcgcagggca taacaggcac gcataacatc cagtaaatcc
    35701 cagcgcgagt tatcatgctg ccagctccag gcgtaaggat cgtagaaatt acgataaaaa
    35761 atgttgcgtg tgacttcgtc gtcgaaacgt acattgttgt agcccagaat acaggtcttc
    35821 ggtacggtaa aaagcgagtg aatacgggcg gcaaacgcgg cttcgttttc tcctttcgcc
    35881 cgtgcttcct gcggggtaat accggtaatt aatacggctc ctggctgggg taaatagtca
    35941 tcagcgggct tgcagtaaaa gacttcgggt tcgccgatga cattgaattc gctatcggtg
    36001 cgaatggctg cgaactgtgc agggcgatct aacgcggggt gcgtgccaaa ggtttcgtaa
    36061 tcgtgaaaca aaaaggtaga ttgttgctta ccgtcattca tcattaggtt aaatccgtta
    36121 tttctgctgt ctgccagagt atcaaatatc accgtgctaa tcagctttag cgccacaatt
    36181 tggcagcgag tggcaacaga tcatgtcaga taaaaatgag agggtagtca cattttcttg
    36241 cactttattc cagccagttc ataagtattt ccgtaaaaag aacagctatt tgaaactcct
    36301 gagggtttgc tgttgaaacg ccgtcttatt attgctgctt ctttgttcgt ttttaactta
    36361 tcgtctggtt ttgcggcgga aaacattcct ttttcacctc agcctccaga gattcatgcc
    36421 gggtcctggg tattgatgga ttacaccacc ggtcagatcc tcaccgcggg taatgagcat
    36481 caacagcgca atcccgccag cctgacaaag ctgatgacgg gttatgtcgt ggatcgcgct
    36541 atcgatagtc atcgcattac gccagacgat attgtcaccg tggggcgcga tgcgtgggcg
    36601 aaagataatc cggtgtttgt cggttcttca ctgatgtttt tgaaagaggg cgatcgcgta
    36661 tcggtacgtg atttaagccg tggtttaatt gtggattccg gaaatgacgc ttgtgttgct
    36721 ctggctgact atattgccgg tgggcaacgg cagtttgttg aaatgatgaa caactatgcc
    36781 gagaagctgc atctcaagga tacgcatttt gaaacagtgc atggtctgga tgcacctggc
    36841 cagcatagct cggcttatga tttagctgtg ctttctcgtg ctatcatcca cggcgagccc
    36901 gagttttatc atatgtacag tgggaaaagt ctcacctgga acggtatcac ccagcaaaac
    36961 cgtaacgggt tgttgtggga taaaaccatg aatgttgacg gcctgaaaac gggtcatact
    37021 tctggtgccg ggtttaatct cattgcttcg gctgtagatg ggcagcgtcg tctcattgca
    37081 gtggtaatgg gggctgacag tgcaaaaggt cgtgaggaag aggcaagaaa attactgcgt
    37141 tgggggcaac aaaactttac tacggtgcaa attttgcacc gtgggaaaaa ggtcggaacg
    37201 gaacgcatct ggtatggcga taaagaaaat atcgacctgg gaacggaaca agag
//
LOCUS       DAJVUN010000015        36495 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.015, whole genome shotgun sequence.
ACCESSION   DAJVUN010000015 DAJVUN010000000
VERSION     DAJVUN010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36495
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.015"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(42..494)
                     /gene="tabA"
                     /locus_tag="OQQ76_000596"
     CDS             complement(42..494)
                     /gene="tabA"
                     /locus_tag="OQQ76_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin biofilm protein TabA"
                     /protein_id="HCS1967192.1"
                     /translation="MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRL
                     FYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAF
                     LPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPARVRKAVVKMLMA"
     gene            complement(639..1232)
                     /locus_tag="OQQ76_000597"
     CDS             complement(639..1232)
                     /locus_tag="OQQ76_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HCS1967193.1"
                     /translation="MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTD
                     YLGINPPSLYAAFGNKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAAR
                     RYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFM
                     STVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE"
     gene            1303..2016
                     /gene="bdcA"
                     /locus_tag="OQQ76_000598"
     CDS             1303..2016
                     /gene="bdcA"
                     /locus_tag="OQQ76_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1967194.1"
                     /translation="MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA
                     ERLAQETGATAVFTDSADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRL
                     FKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
                     ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAG
                     PEASFVTDAMHTIDGAFGA"
     gene            2147..2542
                     /locus_tag="OQQ76_000599"
     CDS             2147..2542
                     /locus_tag="OQQ76_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1967195.1"
                     /translation="MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGT
                     PEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAP
                     PYPTWTAVGVTWLAGFDFEIKVIARIPEL"
     gene            2822..2956
                     /gene="pyrL"
                     /locus_tag="OQQ76_000600"
     CDS             2822..2956
                     /gene="pyrL"
                     /locus_tag="OQQ76_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyr operon leader peptide"
                     /protein_id="HCS1967196.1"
                     /translation="MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
                     "
     gene            2960..3895
                     /gene="pyrB"
                     /locus_tag="OQQ76_000601"
     CDS             2960..3895
                     /gene="pyrB"
                     /locus_tag="OQQ76_000601"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HCS1967197.1"
                     /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV
                     IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA
                     IVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM
                     VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE
                     VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT
                     DVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL"
     gene            3908..4369
                     /gene="pyrI"
                     /locus_tag="OQQ76_000602"
     CDS             3908..4369
                     /gene="pyrI"
                     /locus_tag="OQQ76_000602"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HCS1967198.1"
                     /translation="MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITI
                     GLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPER
                     IDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN"
     gene            4442..4828
                     /gene="ridA"
                     /locus_tag="OQQ76_000603"
     CDS             4442..4828
                     /gene="ridA"
                     /locus_tag="OQQ76_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminobutanoate/2-iminopropanoate deaminase"
                     /protein_id="HCS1967199.1"
                     /translation="MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEIPA
                     DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF
                     PARSCVEVARLPKDVKIEIEAIAIRR"
     gene            complement(5034..7730)
                     /gene="mgtA"
                     /locus_tag="OQQ76_000604"
     CDS             complement(5034..7730)
                     /gene="mgtA"
                     /locus_tag="OQQ76_000604"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HCS1967200.1"
                     /translation="MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLK
                     MAVMPEEELWKTFDTHPEGLNQAEVESAREQHGENKLPAQQLSPWWVHLWVCYRNPFN
                     ILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL
                     RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLP
                     VEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQES
                     EPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLP
                     MIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDIS
                     GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERR
                     RMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQ
                     GLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVK
                     ILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKER
                     IVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLE
                     EGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVS
                     QVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHANTPET
                     QTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPL
                     ASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ"
     gene            complement(7871..7924)
                     /gene="mgtL"
                     /locus_tag="OQQ76_000605"
     CDS             complement(7871..7924)
                     /gene="mgtL"
                     /locus_tag="OQQ76_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_003933616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mgtA regulatory leader peptide MgtL"
                     /protein_id="HCS1967201.1"
                     /translation="MEPDPTPLPRQRLKLFR"
     gene            8109..9074
                     /gene="treR"
                     /locus_tag="OQQ76_000606"
     CDS             8109..9074
                     /gene="treR"
                     /locus_tag="OQQ76_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001181347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator TreR"
                     /protein_id="HCS1967202.1"
                     /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMN
                     QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPEFYEQGYDPIMMESQF
                     SPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDE
                     GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAM
                     KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLIKFLHPE
                     IVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLSRSFPER"
     gene            9175..10596
                     /gene="treB"
                     /locus_tag="OQQ76_000607"
     CDS             9175..10596
                     /gene="treB"
                     /locus_tag="OQQ76_000607"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS trehalose transporter subunit IIBC"
                     /protein_id="HCS1967203.1"
                     /translation="MMSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANAR
                     PKEIEQLPMVKGCFTNAGQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMK
                     WHEQLISHFAETFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFL
                     WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDF
                     GMFSIAKVGYQAQVIPALLAGLALGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHA
                     LIGPFGRMIGDGVAFAVHHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQ
                     SMGGTPVWPLIALSNIAQGSAVIGIIISSRKHNEREISVPATISAWLGVTEPAMYGIN
                     LKYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPNYWQVFALAMAIAI
                     IIPIVLTSFIYQRKYRLGTLDIV"
     gene            10646..12301
                     /gene="treC"
                     /locus_tag="OQQ76_000608"
     CDS             10646..12301
                     /gene="treC"
                     /locus_tag="OQQ76_000608"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HCS1967204.1"
                     /translation="MTNPPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHK
                     LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMV
                     FNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY
                     LHLFAPEQADLNWENPAVRAVLKKVCEFWADRGVDGLRLDVVNLISKDPRFPDDLDGD
                     GRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN
                     FHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFG
                     DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR
                     NDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALA
                     DDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSRE
                     IQPWQPGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK"
     gene            12695..14833
                     /gene="nrdD"
                     /locus_tag="OQQ76_000609"
     CDS             12695..14833
                     /gene="nrdD"
                     /locus_tag="OQQ76_000609"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HCS1967205.1"
                     /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAA
                     VVSEQMQGRNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEI
                     RGLVEQTNASLLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH
                     YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH
                     IYGGTTINRIDEVLAPFVTASYNKHRKTAEEWNIPDAEGYANSRTIKECYDAFQSLEY
                     EVNTLHTANGQTPFVTFGFGLGTSWESRLIQESILRNRIAGLGKNRKTAVFPKLVFAI
                     RDGLNHKKGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE
                     NENGEQIHDGRNNLGVISLNLPRIALEAKGDEATFWKLLDERLVLARKALMTRIARLE
                     GVKARVAPILYMEGACGVRLNADDDVSEIFKNGRASLSLGYIGIHETINALFGGEHVY
                     DNEQLRAKGIAIVERLRQAVDQWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG
                     VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYPNIQHNLKALEDV
                     WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGY
                     LGSPDARPFNAGKQEEVKRRVKHLGNGQIG"
     gene            15023..15487
                     /gene="nrdG"
                     /locus_tag="OQQ76_000610"
     CDS             15023..15487
                     /gene="nrdG"
                     /locus_tag="OQQ76_000610"
                     /EC_number="1.97.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate
                     reductase-activating protein"
                     /protein_id="HCS1967206.1"
                     /translation="MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSG
                     QPFTKAMEDQIINDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIW
                     VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR"
     gene            complement(15532..15918)
                     /gene="cybC"
                     /locus_tag="OQQ76_000611"
     CDS             complement(15532..15918)
                     /gene="cybC"
                     /locus_tag="OQQ76_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313240.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b562"
                     /protein_id="HCS1967207.1"
                     /translation="MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDNLKVVEKADN
                     AAQVKDALTKMRAAALDAQKATPPKLEGKSPDSPEMKDFRHGFDILVGQIDDALKLAN
                     EGKVKEAQAAAEQLKTTRNAYHQKYR"
     gene            complement(16102..17454)
                     /gene="pmbA"
                     /locus_tag="OQQ76_000612"
     CDS             complement(16102..17454)
                     /gene="pmbA"
                     /locus_tag="OQQ76_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HCS1967208.1"
                     /translation="MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT
                     GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY
                     TSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEG
                     GSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQT
                     PEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFL
                     LDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSA
                     RKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGA
                     AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
                     "
     gene            17548..18099
                     /locus_tag="OQQ76_000613"
     CDS             17548..18099
                     /locus_tag="OQQ76_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HCS1967209.1"
                     /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA
                     EIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD
                     KLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKE
                     GNKPPKSARQIFQYLRELAENEE"
     gene            complement(18182..19555)
                     /gene="mpl"
                     /locus_tag="OQQ76_000614"
     CDS             complement(18182..19555)
                     /gene="mpl"
                     /locus_tag="OQQ76_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HCS1967210.1"
                     /translation="MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEK
                     QGIELIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRD
                     RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEAD
                     EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII
                     WPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV
                     GEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRGEANGVTVYDDFAHHP
                     TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHI
                     PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
                     KKAEAAQ"
     gene            19731..20729
                     /gene="fbp"
                     /locus_tag="OQQ76_000615"
     CDS             19731..20729
                     /gene="fbp"
                     /locus_tag="OQQ76_000615"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HCS1967211.1"
                     /translation="MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAG
                     LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH
                     AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV
                     YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK
                     KYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYEC
                     NPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA"
     gene            complement(20762..21754)
                     /gene="yjfF"
                     /locus_tag="OQQ76_000616"
     CDS             complement(20762..21754)
                     /gene="yjfF"
                     /locus_tag="OQQ76_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease YjfF"
                     /protein_id="HCS1967212.1"
                     /translation="MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAF
                     LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFG
                     AFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
                     HLSAMGLLMLVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTG
                     LATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGL
                     IQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQR"
     gene            complement(21741..22763)
                     /locus_tag="OQQ76_000617"
     CDS             complement(21741..22763)
                     /locus_tag="OQQ76_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313234.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1967213.1"
                     /translation="MPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQV
                     VLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVA
                     EVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVT
                     FNSPDLSWFGSGSLLFLPTAVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAG
                     VNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMG
                     GRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGV
                     RSRDKT"
     gene            complement(22777..24279)
                     /locus_tag="OQQ76_000618"
                     /pseudo
     CDS             complement(22777..24279)
                     /locus_tag="OQQ76_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026286.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
     gene            complement(24419..25375)
                     /gene="ytfQ"
                     /locus_tag="OQQ76_000619"
     CDS             complement(24419..25375)
                     /gene="ytfQ"
                     /locus_tag="OQQ76_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactofuranose ABC transporter
                     substrate-binding protein YtfQ"
                     /protein_id="HCS1967214.1"
                     /translation="MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV
                     AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD
                     AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG
                     ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA
                     HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPA
                     FDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMGY"
     gene            25685..26215
                     /gene="ppa"
                     /locus_tag="OQQ76_000620"
     CDS             25685..26215
                     /gene="ppa"
                     /locus_tag="OQQ76_000620"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001739810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HCS1967215.1"
                     /translation="MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDR
                     FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGE
                     DAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAE
                     AAKAEIVASFERAKNK"
     gene            complement(26595..26936)
                     /locus_tag="OQQ76_000621"
     CDS             complement(26595..26936)
                     /locus_tag="OQQ76_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HCS1967216.1"
                     /translation="MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGA
                     VPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVEGLKL
                     IESGDWLDRDK"
     gene            complement(26939..30718)
                     /gene="tamB"
                     /locus_tag="OQQ76_000622"
     CDS             complement(26939..30718)
                     /gene="tamB"
                     /locus_tag="OQQ76_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamB"
                     /protein_id="HCS1967217.1"
                     /translation="MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVP
                     GLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQ
                     VNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSG
                     LNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSR
                     SVLPEMTDLHLPLNLNIEEFKGEQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDS
                     NQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKVGGALREQLEIGVNLSGP
                     VDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMR
                     TAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTL
                     NGINTAKEFPEWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGN
                     SYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKV
                     RGTVEAPQLLADITARGLRWQELSVTQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNI
                     NLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTLVGPW
                     SLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDFAMLK
                     PFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTL
                     NLTAELRNNRAELGWTIRLTNNGQFDGQVLVTDPQGRRNLGGNVNIRNFNLAMINPIF
                     TRGEKAAGMVSANLRLDGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMR
                     STLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFE
                     ATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNL
                     IVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGE
                     LLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSY
                     LLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQV
                     VVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF"
     gene            complement(30715..32448)
                     /gene="tamA"
                     /locus_tag="OQQ76_000623"
     CDS             complement(30715..32448)
                     /gene="tamA"
                     /locus_tag="OQQ76_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamA"
                     /protein_id="HCS1967218.1"
                     /translation="MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLS
                     TIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGV
                     PVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
                     SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEY
                     ESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYST
                     DVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGF
                     KRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMI
                     SRTRSRGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGT
                     LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQY
                     NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHG
                     LQFYIGLGPEL"
     gene            32654..33292
                     /gene="msrA"
                     /locus_tag="OQQ76_000624"
     CDS             32654..33292
                     /gene="msrA"
                     /locus_tag="OQQ76_000624"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HCS1967219.1"
                     /translation="MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGME
                     IAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD
                     PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAA
                     MLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA"
     gene            33615..34958
                     /locus_tag="OQQ76_000625"
     CDS             33615..34958
                     /locus_tag="OQQ76_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1967220.1"
                     /translation="MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINA
                     QRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSF
                     ILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANM
                     IFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTP
                     RENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA
                     LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG
                     DLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK
                     IPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA"
     gene            complement(35020..35226)
                     /locus_tag="OQQ76_000626"
     CDS             complement(35020..35226)
                     /locus_tag="OQQ76_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1107 domain-containing protein"
                     /protein_id="HCS1967221.1"
                     /translation="MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKV
                     KDKLHLSVMSEVNRQVMRLQTEMA"
     gene            35551..36105
                     /locus_tag="OQQ76_000627"
     CDS             35551..36105
                     /locus_tag="OQQ76_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HCS1967222.1"
                     /translation="MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDK
                     DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT
                     DDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQ
                     WAKDGALTQEEVQQVMDLLQKLLK"
     gene            complement(36195..>36495)
                     /locus_tag="OQQ76_000628"
     CDS             complement(36195..>36495)
                     /locus_tag="OQQ76_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967223.1"
                     /translation="IIDDNFAIVIESLGFALKIYGGDERFRNGSSVVLEDEDYSLIYN
                     FLVNAGCQQVELAEQVDAIVSANLAVDSDITEEEICEKYKSTIEAFKKEQLALPV"
BASE COUNT         8826 a         9835 c         9106 g         8728 t
ORIGIN      
        1 aaactcgccg taaacctgga gttatttacg gcgaaaagtc atcacgccat cagcatcttc
       61 actactgctt tgcgaacccg ggctggcgcg cccactgcgc acagcggttt atgcacttcc
      121 cccggataaa acacaacaaa atcaccttca ttaaggataa ctgttttctc atcaacgcct
      181 tccggcaaaa atgcgatgtc tttatcagct aaccagtcgg tatccggggt gcctgcaggt
      241 tgcgtgctga aggtcatgcc ttcctgacct tttaacacaa tctgaatgtc gagatagcgg
      301 gcatggtact ccgcacggcg agcttcgtgc ggctcggtca tatcttccga gataagataa
      361 aacagacgat tgccttcgat atcgtgcttg ccctttggcg tttctgccgt aacgtgtgct
      421 ttgatatgct caatcgcctg gcgtaactcc tggggtagcc acggctgaag attatgaata
      481 tttccgatga tcatcttttc cactccttaa ttaaaacaac gtttcatttc catcgttata
      541 cgaaaagatg atcaattccg ctagccttaa cgcgtgaatt attgtcttat cacaacttat
      601 cggcaggcgc gttcccgcct ttcgggtcaa ggcccgcatc actccttgag aatagttttt
      661 atcgcttccc ccgccagtgc agctgttgca cagagttgtt cgatggagtg cccctcccgt
      721 gccttcgcag aaagccctga catcacggta ctcataaaat cagtcacaca ttgtgcgctt
      781 tgtggatgcc gcctggcgat atagtcataa atggtcgttt ctgcggcgtg ataatattga
      841 acggcaatat cacgcgcttg tggatcatga ctatgaatgc cttcaagaac catacagcca
      901 gcgcagccgc cgttttggct atatctgcgc gccgcttctt ttaatacctc agccaggcac
      961 tcccctaccg gacgatcatc acgaagaata tcggcaagcg gaatagcttc cgtaccgaca
     1021 tattcattga gtacacggct aaataaccca gccttattgc caaaagccgc gtagaggctc
     1081 ggggggttaa taccaagata atcagtaact tcagcaacac tgacagcatc gaaacctttt
     1141 tggtgaaaaa gcacttttgc cgcagagact gcctgctcag gagcgaaacg tctgggacga
     1201 cctggaacgc gagattgttt tttagtgacc attacaaaac ttgttgacag aaagttaaaa
     1261 cagttttgta gtgcatgtta cataataaat caaggagtcc ttatgggcgc ttttacaggt
     1321 aagacagttc tcatcctcgg tggtagccgt ggaatcggtg ccgctatcgt acgtcgtttc
     1381 gtcaccgatg gggccaatgt acgattcacc tatgcggggt cgaaagatgc cgctgaacgc
     1441 ctggcacaag agactggagc gacagcagta ttcacagata gtgctgacaa agacgctgtt
     1501 attgatgtcg ttcgtaagag cggcgcattg gatatcctgg tggtaaatgc aggtattggc
     1561 gtctttggcg atgccctgga attaaatgcc gacgatattg atcgcctttt caaaatcaat
     1621 attcatgctc cttaccatgc ctctgttgaa gccgcccggc agatgcccga aggcggacgc
     1681 atcttaatca tcggctccgt gaatggcgat cgtatgcctg ttgcaggcat ggctgcttat
     1741 gccgccagta aatctgccct gcaaggcatg gcgcgcgggc tggcccgtga tttcggaccg
     1801 cgtgggatca ccatcaacgt cgtccagcca gggccaattg ataccgacgc taatcccgcc
     1861 aacgggccaa tgcgcgatat gtcgcatagt tttatggcca tcaaaagaca tgggcaaccg
     1921 gaagaggtcg ctggtatggt cgcatggtta gcagggccag aagccagttt tgttaccgac
     1981 gcgatgcata ccattgatgg cgcgtttggc gcataaccga ctacgctcaa ttaagcccag
     2041 ccatttccca tgatgtctgg gttttgttta ctcacgtcgt ccgctaaaag cggctcctgg
     2101 taaatataaa tcttctgttc atgtcgtaaa tcttgaggat aaccaaatgg tagaaagaac
     2161 cgctgttttc cctgctggac gacattcact gtatgctgag catcgttatt ctgcggctat
     2221 tcgttccggc gatttgctgt ttgtttccgg gcaagtagga agtcgagagg acggaacacc
     2281 agaacccgat tttcagcaac aagtcagact ggcctttgat aatttgcatg cgaccctggc
     2341 agctgcggga tgcacttttg acgatatcat tgatgttacg agctttcata ccgatccaga
     2401 aaaacaattt gaagacatca tgacggtgaa aaatgaaata tttagcgcgc caccttatcc
     2461 aacctggacg gcggtgggcg ttacatggct ggcaggcttt gattttgaaa ttaaagtgat
     2521 agcgcgcatc cctgagctct aagcaatagt gctagccgtt cgttttcaca ctccgcccta
     2581 taagtcggat gaatggaata aaatgcatat ctgattgcgt gaaagtgaaa aagaaaaaag
     2641 caggaaatgt ctgcaattat tgataccgaa cgacagttcc ccccagaatc acagtaaata
     2701 aaaatgcata tattttaact ttaaattcaa ataaaccgtt tgcgctgaca aaatattgca
     2761 tcaattgctt gcaccgcttc tgacgatgag tataatgccg gacaatttgc cgggaggatg
     2821 tatggttcag tgtgttcgac attttgtctt accgcgtctg aaaaaagacg ctggcctgcc
     2881 gtttttcttc ccgttgatca cccattccca gcccctcaat cgaggggctt ttttttgccc
     2941 aggcgtcagg agataaaaga tggctaatcc gctatatcag aaacatatca tttccataaa
     3001 cgaccttagt cgcgatgacc ttaatctggt gctggcaaca gcggcaaaac tgaaagcaaa
     3061 cccgcaacca gagctgttga agcacaaagt cattgccagc tgcttcttcg aagcctctac
     3121 ccgtacccgc ctctctttcg aaacttccat gcaccgcctg ggtgccagcg tggtgggctt
     3181 ctccgacagc gccaatacat cactgggtaa aaagggcgaa acgctggccg ataccatttc
     3241 ggttatcagc acttacgtcg atgcgatagt gatgcgtcat ccgcaggaag gtgcggcgcg
     3301 cctggccacc gagttttccg gcaatgtacc ggtactgaat gccggtgatg gctccaacca
     3361 acatccgacg caaaccttgc tggacttatt cactattcag gaaacccagg ggcgtctgga
     3421 caatctccac gtcgcaatgg ttggtgacct gaaatatggc cgcaccgttc actccctgac
     3481 tcaggcgtta gcgaagttcg acggcaaccg tttttacttc atcgcgccgg acgcgctggc
     3541 aatgccgcaa tacattctgg atatgctcga tgaaaaaggg atcgcatgga gtctgcacag
     3601 ctctattgaa gaagtgatgg cggaagtaga catcctgtat atgacccgcg tgcaaaaaga
     3661 gcgcctggac ccatccgaat acgccaacgt gaaagcgcag tttgttcttc gcgccagcga
     3721 tctccacaac gccaaagcca atatgaaagt actgcatccg ctgccgcgtg ttgatgaaat
     3781 tgcgacggat gttgataaaa cgccacacgc ctggtacttc cagcaggcag gcaacgggat
     3841 tttcgctcgc caggcgttac tggcactggt tctgaatcgc gatctggtac tgtaagggga
     3901 aatagagatg acacacgata ataaattgca ggttgaagct attaaacgcg gcacggtaat
     3961 tgaccatatc cccgcccaga tcggttttaa gctgttgagt ctgttcaagc tgaccgaaac
     4021 ggatcagcgc atcaccattg gtctgaacct gccttctggc gagatgggcc gcaaagatct
     4081 gatcaaaatc gaaaatacct ttttgagtga agatcaggta gatcaactgg cattgtatgc
     4141 gccgcaagcc acggttaacc gtatcgacaa ctatgaagtg gtgggtaaat cgcgccccag
     4201 tctgccagag cgcatcgaca atgtgttggt ctgcccgaac agcaactgta tcagccatgc
     4261 cgaaccggtt tcatccagct ttgccgtgcg aaaacgcgcc aatgacatcg cgctcaaatg
     4321 caaatactgt gaaaaagagt tttcccataa tgtggtgctg gccaattaat tgcggttggt
     4381 aataaaagtc tggctcccta taatgagcca gactttttac cgctgtaata aaggagaaat
     4441 catgagcaaa actatcgcga cggaaaatgc accagcagct atcggtcctt acgtacaggg
     4501 cgttgatctg ggaaatatga tcatcacctc cggtcagatc ccggtaaatc cgaaaacggg
     4561 cgaaataccg gcagacgtcg ctgcacaggc acgtcagtcg ctggataacg taaaagcgat
     4621 cgtcgaagcc gctggtctga aagtgggcga catcgttaaa actaccgtgt ttgtaaaaga
     4681 tctgaacgac ttcgcaaccg taaacgccac ttacgaagcc ttcttcaccg aacacaacgc
     4741 caccttcccg gcacgttctt gcgttgaagt tgcccgtctg ccgaaagacg taaagattga
     4801 gatcgaagcg atcgctattc gtcgctaatc ttgatggaaa tccgggctat catgcccgga
     4861 ttaagtctga tgacaaacgc aaaatcgcct gatgcgctac gcttatcagg cctacgtgat
     4921 tcctgcaatt gattgaattt gtaggccgga ttaggcgttt acgccgcatc cggcatgaac
     4981 aaaactcact ttgtctgcaa tctgaatccg ggccaccatg cccagtttat tctttactgc
     5041 cagccgtaac gacggctata aaatcctttc accaactggg ttaacgtcat ataccctgcc
     5101 agaatcgcaa ccagccacgg gaaatagctt aacggcaacg cctgtaattg cagataactg
     5161 gccagcggtg aaaacggcaa tgcgatcccg acaatcatca cgatcacggt catgatcatt
     5221 aacggccacg atgcacagct ctgaataaac ggcacacggc gggtgcggat catatgcaca
     5281 atcagcgttt gcgacagtaa gcccaccaca aaccatcccg actggaacag cgtttgcgtt
     5341 tccggcgtgt tggcatggaa tacccaccac atcaggcaaa acgtcagaat atcgaagatc
     5401 gagctgatcg gtccgaagaa gatcataaag cgccccagat ccgccggatt ccaacgctgc
     5461 ggcttttgaa tttgctcgtc gtcgacgtta tcaaacggga tcgccacctg tgacacatcg
     5521 tacagcaggt tctgaataag caagtgtaac ggcaacatcg gcaggaaggg caagaaagca
     5581 ctcgccacca gcacgctgaa cacattacca aagttagaac tcgccgtcat tttgatgtat
     5641 ttcagcatgt tggcgaaagt gcgacgtccc tcaataaccc cctcttccag caccatcagg
     5701 cttttttcca gcaggatgat atcagccgct tcacgggcaa tatctaccgc gccgtccaca
     5761 gaaatgccga tatccgccgc gcgtaaggcg ggcgcatcat taataccatc gcccataaag
     5821 ccaaccacat gcccttcgcg cttcagtaag gtcacaatgc gttctttatg catcggcgtc
     5881 aggcgggcaa acagcgtggt gcgctgtgca agatttgcca gttcgtcgtc agatagcgtt
     5941 tcaatatcac taccaatgac cacctctccc gcgtccagcc ccacttcatg gcacactttc
     6001 gctgcaacta actcactgtc gccagtaagg atttttacgg taattccact cgcttttaat
     6061 gccttcagtg ccggagcggt tgtctctttt ggcggatcaa gaaaagcaat atatccttcg
     6121 aggatcaggt cggattcatc cgcccgctgg taatctcctt cacgcgctgg caggtatttc
     6181 gtcgccaccg caaccacgcg cagcccctga cgattcagcg tatcagtaac ccgcttaatc
     6241 ttacgcagca tgatgtcatc gagcggcaca atctcgccat tgtgacgcac ctgcgaacac
     6301 acattgagga tttcctgcaa tgcacctttg caaaccagct gatggtgctc ggtattttct
     6361 gccactacca ccgacatccg gcgacgctcg aaatcaaacg gaatctcatc gattttttgc
     6421 caacgactgg ccagcgagcg cgctgactct tcatccgtac cttcgagcac cgctgtatcg
     6481 agcaggtttt taagtccggt ctgataatga ctgttcaacc acgcgctatg cagcacgcgt
     6541 tcgctggttt taccggagat atcggtatga ttctccagca caattttatc ctgcgtcagg
     6601 gtgccggttt tatcagtgca cagaatatcc attgcgccaa agttctgaat agcatccaga
     6661 tgtttgacga tcactttctg tttcgacagc tttactgcgc cgcgcgccag cgtcgaggta
     6721 acaatcatcg gcaacatttc cggcgttagg cctaccgcga ccgaaagcgc aaacagcgcc
     6781 gcttcccacc agtcgccttt ggtgtagcca ttgattaaca gcaccaccgg tgccatcacc
     6841 agcataaagc gaatcagcag catactgacg cggctgatcc cttgctgaaa ggcattcggc
     6901 tcgctttcct gctcactaac acgccccgcc agttgaccaa accaggtatt ggcacctgta
     6961 gcaatcacca ttgcttgtgc cgtgccgctc accacggtgg tgcccataaa acacagcgtg
     7021 tcgcactcca gcggattgct gtgctccggc tggcgagtgg tagcggcttt ttccacgggc
     7081 agagactcac cggttaacga cgcctgagcg acgaacagat cccgcgcttg caagatacgt
     7141 aaatctgccg ggatcatatc ccccgccgcc agttttataa tatcgccggg caccagctgg
     7201 tcgatcggga tctccagcca gccattttcg cctttgtcgt taattacgcg cagcaccgtc
     7261 gcggtattgc tgaccatcgc tttcagggca tctgccgctt tagtggaacg tgcttcctga
     7321 ataaagttca gcaacgtaga aatagcgacc attagcgcga taacgcccgc agcaaataaa
     7381 tcttccgtgg cgtaagaaat agcgccgaga atggtgagta aaatattaaa ggggttgcga
     7441 tagcagaccc ataaatgtac ccaccacggc gacagttgtt gtgcgggtaa tttattttca
     7501 ccatgttgtt cgcgggcaga ttccacttcc gcctgattta acccttccgg atgggtgtcg
     7561 aacgttttcc acaattcttc ttcgggcatc accgccattt tcaggcaatg cgcacttaag
     7621 gacggcggga ccaccgtatt cactgtctgc tgcgcgccag gcaatggatc acgatgaacc
     7681 agacgggaag gtaaatggcg aatgagccgg gtaaaaattt ctttaaacat aaggagtccc
     7741 tccgcactgt ctgaaacagt acagaaatgt cttcaggcgt ggcgaagcct tacctgaagg
     7801 taataatgct gagcagggac gttaaaacgt cacggcctta cgcatccggt aacgccgtga
     7861 aaagacgggc ttaccggaaa agttttaatc tctgtcgagg gagaggcgtg ggatcaggtt
     7921 ccatataacc tccggtaagt gaaaaaagcg ccgcaaataa taaggagaat acaataatat
     7981 tcgtagcatc tatggcgata taatacctgc tggcaactaa accaacgata aaccagactt
     8041 tacccattgc tgaatgcacg ggtaaagtta ggctcaaata attaaacaac acgttacagg
     8101 acaacaggat gcaaaatcgg ctgaccatca aagacatcgc gcgcttaagc ggcgtgggga
     8161 aatctacagt ttcccgggtg ctgaataacg aaagcggcgt gagccagcgc acccgcgagc
     8221 gtgttgaagc agtgatgaat cagcatggat tttccccttc ccgctctgcg cgcgctatgc
     8281 gtgggcaaag cgataaagtg gtcgccatca ttgttacccg cctggattcg ttgtcagaaa
     8341 atctcgccgt tcaaaccatg ctgccagagt tctatgaaca aggttacgac ccaatcatga
     8401 tggaaagtca gttttccccg caattagttg ccgaacattt gggggtgctg aaacggcgta
     8461 atatcgacgg cgtagtgctg ttcggtttta ccggcataac agaagaaatg ttagcccact
     8521 ggcagtcatc gctggttctg ctggcgcgtg acgcaaaagg ctttgcttcg gtctgttatg
     8581 acgacgaagg ggcaatcaag atcctgatgc aacggctgta tgaccagggg catcgtaata
     8641 tcagttatct cggcgtgccg cacagtgacg tgacgaccgg taagcgacgt cacgaagcct
     8701 acctggcgtt ctgcaaagcg cataaactgc atcccgttgc cgctctgcca ggccttgcta
     8761 tgaagcaagg ctatgagaac gtagcaaaag tgattacgcc tgaaactacc gccttactgt
     8821 gcgcaaccga cacgctggca cttggcgcaa gtaaatacct gcaagagcaa cgcatcgaca
     8881 ccttgcaact ggcgagcgtc ggtaatacgc cgttaataaa attcctccat ccggagatcg
     8941 tcaccgtaga tcccggttac gccgaagctg gacgccaggc ggcctgccag ttgatcgcac
     9001 aggtaaccgg gcgcagcgaa ccgcaacaaa tcatcatccc cgccaccctg tccagatcgt
     9061 ttcctgaacg ataaattgtg atcttcgctg cgtttcggga acgttccctt ttttaaattt
     9121 ttccgcgcaa tatattctgc agccaaccaa aaatgtcatc tgccatgggg ctttatgatg
     9181 agcaaaataa accaaacgga tatcgatcgg ttgattgaac tggtcggcgg gcgcggcaat
     9241 attgcgacgg tgagccactg tattactcgc ctacgctttg tcctcaacca accggccaat
     9301 gccagaccga aagaaattga gcaactcccc atggtgaaag gctgtttcac caatgccggg
     9361 caatttcagg tggtgattgg caccaacgtg ggtgactact atcaagcact gatagcgtca
     9421 accggacagg cgcaggttga taaagagcag gtaaaaaaag ccgcccggca gaatatgaaa
     9481 tggcatgagc agttgatctc tcatttcgca gagaccttct tcccgttgct gcccgcgttg
     9541 attagcggcg gtttgatcct cggttttcgc aatgtgatcg gcgatttgcc catgagcaac
     9601 ggtcaaacgc tggcgcaaat gtacccttcc ctgcaaacga tctacgattt tctgtggttg
     9661 atcggtgaag cgatcttctt ctacctgccg gtcgggattt gctggtcagc ggtgaaaaaa
     9721 atgggcggca caccgatcct tggtatcgtg cttggcgtga cactggtttc cccccaactg
     9781 atgaacgctt atctgctcgg gcagcagctg ccggaagtgt gggactttgg catgttcagc
     9841 atcgccaaag tgggctatca ggcgcaggtg atcccggcac tgttagccgg gctggcgctg
     9901 ggcgttattg aaactcgcct taaacgcatc gtgccagatt acctctatct ggtggtggtg
     9961 cccgtctgtt cgctgatcct cgcggtgttc ctcgcccatg cgctgattgg tccgtttggt
    10021 cgcatgattg gcgatggcgt tgcctttgcg gtacatcacc tgatgaccgg cagctttgct
    10081 ccgattggcg cggcattgtt tggcttcctg tacgccccgc tggtgatcac cggggtacac
    10141 cagaccacgc ttgctattga tttgcagatg attcaaagca tgggtggtac gccagtgtgg
    10201 ccactgattg cgctgtcgaa tatcgctcag ggctccgccg tgatcggcat tatcatttcc
    10261 agccgcaagc acaatgaacg cgagatctcc gtgcctgcga cgatctccgc ctggcttggg
    10321 gtcactgagc ctgcaatgta cggcatcaac ctgaaatatc gcttcccgat gctgtgcgcg
    10381 atgattggtt ctggtctggc aggattgcta tgcggcctga acggcgttat ggcgaatggc
    10441 atcggcgtag gcggcctgcc gggaattctc tcgattcaac cgaactactg gcaggtgttt
    10501 gcgctggcaa tggctatcgc catcatcatc ccgattgtac tcacctcgtt tatctatcag
    10561 cggaaatacc gcctgggcac gctggacatt gtttaatttt cttcggggcg caattgcgcc
    10621 ccctcgcatt tgcaggaata acgtaatgac taatcctccc cactggtggc aaaacggcgt
    10681 tatctaccag atttatccaa agagttttca ggacaccacg ggtagcggta ccggcgattt
    10741 acgtggcgtt atccaacgcc tggactatct gcataaactg ggcgttgatg ccatctggct
    10801 aacccccttt tatgtctctc cccaggtcga taacggttac gacgtagcga actatacggc
    10861 gattgatccc acctacggca cgctggacga ttttgacgaa ctggtgacgc aggcaaaatc
    10921 gcgcgggatt cgtatcattc tcgatatggt gtttaaccat acctctaccc aacatgcctg
    10981 gtttcgcgag gcgctgaaca aagaaagccc ttaccgccag ttttatatct ggcgcgatgg
    11041 agaaccagaa acgccaccga acaactggcg ttcaaaattt ggcggtagtg cgtggcgctg
    11101 gcatgcggaa agcgaacagt actatttgca tctctttgca ccagaacagg cggatctcaa
    11161 ctgggagaat ccagcggtac gcgcagtgct gaaaaaagtc tgtgagttct gggccgatcg
    11221 tggggtcgac gggttgcgcc tggatgtggt gaatctgatc tccaaagacc cgcgtttccc
    11281 tgatgacctg gatggcgacg ggcgtcgctt ctacaccgac gggccacgag cacacgagtt
    11341 tttgcacgag atgaaccgcg atgtgtttac gccacgcggg ttaatgaccg taggtgaaat
    11401 gtcctccacc agccttgagc attgccagcg atacgcggca ctgacaggca gtgaattgtc
    11461 gatgaccttt aattttcatc acctgaaggt cgattatccc ggtggtgaaa aatggacgct
    11521 ggctaaacct gactttgtgg cgttgaaaac attgttccgc cactggcaac aaggaatgca
    11581 caacgtagca tggaatgcct tgttctggtg taaccacgat cagccgcgca ttgtttctcg
    11641 ctttggtgat gaaggtgaat accgcgtgcc tgcggcaaaa atgctggcga tggtgctgca
    11701 tggcatgcag ggaacgccgt atatctacca gggcgaagag attggcatga ccaacccgca
    11761 tttcacgcgc attactgact atcgcgacgt agagagcctc aatatgtttg ccgagctgcg
    11821 caacgatggt cgtgatgccg acgagttatt ggcaatcctt gccagtaaat cccgtgacaa
    11881 cagccgcacg cccatgcaat ggagcaacgg cgataatgcc ggatttacgg ctggcgaacc
    11941 gtggattggc ctaggtgata actatcaaca aatcaacgta gaagccgcgc tggccgatga
    12001 ttcctcggtg ttttacacct accaaaagtt aatcgcactg cgtaagcagg aagccatcct
    12061 gacatggggc aattaccagg atctgctgcc aaacagccct gtattgtggt gctatcgccg
    12121 tgaatggaag gggcaaacct tgctggtcat tgccaacctt agccgtgaga tccaaccctg
    12181 gcagccaggg caaatgcgcg gcaactggca gcttgtgatg cataactacg aagaagcctc
    12241 accacaaccc tgtgccatga atttacggcc ttttgaggct gtctggtggt tacagaagta
    12301 aatcttccct aagccccggt aatgccggtc attccggggt tttgtctgtc agcatgttgt
    12361 ttttgtttat ttttcaacca gcaaattcat taaaaaattt acataacgct gtagcgcccg
    12421 tcatccgtac gctctgcttt ttactttgag ctacatcaaa aaaagttcaa acatccttga
    12481 tgcaaagcac tatatataga ctttaaaatt cgtcccaacc caatatgttg tattaatcga
    12541 ctataattgc tactacagct ccccacgaaa aaggtgcggc gttgtggaaa agcggatggc
    12601 gattgcggaa agcaccggaa aacgaaacga aaaaaccgga aaacgccttt cccaatttct
    12661 gtggataacc tgttcttaaa aatatggagc gatcatgaca ccgcatgtga tgaaacgaga
    12721 cggctgcaaa gtgccgttta aatcagagcg catcaaagaa gcgattctgc gtgcagctaa
    12781 agcagcggaa gtcgatgatg ccgattattg cgccactgtt gctgcagttg tcagcgagca
    12841 gatgcagggc cgcaaccagg tggatatcaa tgagatccag accgctgttg aaaaccagct
    12901 gatgtcaggt ccatacaaac aactggctcg tgcttacatc gagtaccgtc acgatcgcga
    12961 cattgaacgt gaaaaacgcg gtcgcctgaa tcaggagatc cgtggtctgg tcgagcagac
    13021 caacgcctcg ttactcaacg aaaacgccaa caaagacagc aaggtgattc caacccagcg
    13081 cgacctgctg gccgggatcg tggctaaaca ctatgcacgt cagcacctgc tgccgcgtga
    13141 cgtggtgcag gcacatgagc gtggcgatat tcactatcac gatctcgatt actcgccgtt
    13201 cttcccgatg ttcaactgca tgttgatcga cctgaaaggc atgctgaccc agggctttaa
    13261 gatggggaac gccgagattg aaccgccgaa gtcgatctct acggcaaccg ctgtaactgc
    13321 gcagattatt gctcaggtcg ccagccatat ttatggcggc accaccatta accgtatcga
    13381 tgaagtgctg gcaccgtttg tcaccgccag ctacaacaaa catcgcaaga ccgcagaaga
    13441 gtggaacatc ccggacgccg aaggctacgc taactctcgt accattaaag agtgctacga
    13501 tgccttccag tcgctggagt acgaagtaaa caccctgcac accgccaacg gtcagacgcc
    13561 gtttgtaacc tttggttttg gtctgggtac cagctgggag tcgcgcctga ttcaggaatc
    13621 tatcctgcgt aaccgtatcg caggcctcgg taaaaaccgt aaaactgcgg tgttcccgaa
    13681 actggtgttt gcgattcgcg atggcctgaa ccataaaaaa ggcgatccga actacgacat
    13741 caaacagctg gcgctggagt gcgcaagcaa gcgcatgtat ccggatatcc tgaactacga
    13801 tcaggtagtg aaagtcaccg gttcgtttaa aactccgatg ggctgccgca gcttcctcgg
    13861 cgtgtgggaa aatgaaaacg gcgagcagat ccacgatggt cgtaacaacc tcggcgtgat
    13921 cagcctgaac ctgccgcgta ttgctctgga agcaaaaggc gatgaagcca ccttctggaa
    13981 gctgctggat gaacgtctgg tgctggcacg taaggcgctg atgacccgta tcgctcgtct
    14041 cgaaggcgtg aaagcgcgcg tggccccgat cctctatatg gaaggtgctt gtggcgtgcg
    14101 tctcaatgct gacgatgatg tttctgaaat cttcaaaaac ggtcgtgcgt ctctttcgct
    14161 gggttacatc ggcatccacg aaaccattaa cgcgctgttc ggcggcgagc atgtttacga
    14221 caacgagcag cttcgcgcga aaggtatcgc cattgttgaa cgtctgcgtc aggcagtgga
    14281 tcagtggaag gaagaaacgg gttatggttt cagtctctac agcacgccga gtgaaaacct
    14341 gtgcgaccgc ttctgccgtc tcgatactgc tgagtttggc gtggtgccgg gcgtgaccga
    14401 taaaggttac tacaccaaca gtttccacct cgatgtggag aagaaggtga acccgtacga
    14461 caagatcgac tttgaagcgc cttacccgcc gctggcgaac ggtggtttca tttgctacgg
    14521 cgagtatcca aacattcagc acaacctgaa ggcgctggaa gatgtctggg attacagcta
    14581 tcagcatgta ccgtattacg gcaccaatac accgattgat gagtgctacg agtgtggctt
    14641 taccggtgag ttcgagtgca ccagcaaagg cttcacctgc ccgaaatgtg gtaaccatga
    14701 cgcctcccgt gtgtcggtaa ctcgccgcgt gtgcggatat ttaggtagcc cggatgcacg
    14761 tccgtttaac gccggcaagc aggaagaagt taagcgccgc gttaaacatt tgggaaatgg
    14821 gcagataggt tgatctgcac taagcaaatg ccggatgtga tgtgaaagcg tcgcatcccg
    14881 cgttgattgc cggatgcggc gtaaacgcct tatccggcct acatttggca acggctgtag
    14941 gcctgataag acgcgacagc gtcgcatcag gcattgatta ccggatgcag tctacacgcg
    15001 gactgataag ccaggcgaaa taatgaatta tcatcagtac tatcctgtcg acatcgtcaa
    15061 cggccccggc actcgttgca ccctgtttgt ctccgggtgt gttcatgaat gccccggttg
    15121 ctataacaaa agcacatggc gggtaaattc cggtcagcca tttactaaag caatggaaga
    15181 ccagatcatt aacgatctga atgacactcg tatcaaacgc cagggtattt ccctctccgg
    15241 cggcgatccg ctgcatccgc aaaacgtgcc ggatattctg aaactggtac aacgcatccg
    15301 cgccgagtgt ccgggtaaag acatctgggt gtggacaggc tataaactcg acgaactcaa
    15361 cgcagcgcaa atgcaggttg ttgatttgat taacgtgctg gtcgacggca aatttgtgca
    15421 ggatttaaaa gacccttccc tgatctggcg cggcagcagc aatcaggtgg tgcatcattt
    15481 gcgatgataa gttccctgtt acctgagtgc aggcaacagg gaaatgagga attaacgata
    15541 cttctggtga taggcgttgc gggtcgtttt cagttgctct gcggcagcct gcgcttcttt
    15601 tactttacct tcatttgcca gcttcagcgc gtcgtcaatc tgaccgacca gaatatcgaa
    15661 accgtgacgg aagtctttca tctccgggct gtccggtgat ttgccttcga gcttcggcgg
    15721 cgttgctttt tgcgcatcca gcgctgcggc gcgcatcttc gttaacgcgt ctttgacttg
    15781 cgccgcgtta tcggcttttt cgaccacttt taaattgtcg ttgagggttt ccatattgtc
    15841 ttcaagatca gcggcaaacg acgccgaact gaataccaac gaggagactg caagaatagc
    15901 taacaggctt tttcgcattg ctcacatcct tttttattta cacttcatca ttcacactgc
    15961 ctcatcgacg actacgctca ttcgaccggg tcacgtactg cgagtacgct ccccggccct
    16021 cattcacttt ccgtatcgat gcagtgcgaa tgattttgtg taatttttta gtttatagcg
    16081 cgacaggtcg cgccagtttt tttactgtcc ggcgattttc atctccggca acagcacaga
    16141 accacactgt atattactgc gtgtttcaat atcgttaccg acggtgacaa tattgcgcca
    16201 catatctttt aaattacctg cgatggtgat ttcgctaacc ggatactgaa tttcgccgtt
    16261 ttctacccag aagcccgccg caccacggga ataatcaccg gtaattgcac tcacgccctg
    16321 gcccatcaat tccgtcacca ccagcccggt gcccatctct ttgagcatct gctcgaagct
    16381 tagaccttgt ccggcaatcc gccagttgtg aataccgccc gcatgtccgg tgcttttcag
    16441 ccccagtttt cgcgccgaat agctggtcag cagccactga gtcaggatgc catctttaat
    16501 aatatcgcga cgctcggtgc gcacaccttc gctgtcgaat ggcgtcgacg ccagcccttt
    16561 cagcagatgc ggatgctctt caatggtcag ccagtccggc agaatttgtt tacccagcga
    16621 atccagcagg aaggtagatt tacggtaaac cgatccaccc gctatcgccc ccaccagatg
    16681 gccaaaaagc ccggttgcca cttcattggc aaaaatgacc ggcgctttca tggtggagag
    16741 tttacgcggt gacaggcgcg ataaagtacg gcgagcacag tcggccccaa cccactctgg
    16801 cgtttgcaga tcgctcatcg cacgaccaat ggtgtaggcg taatcacgct ccatatcgcc
    16861 attttcttcg gcaattacac agctggagag cgaatgacgc gttgagcagt aaccctgcaa
    16921 catgccgtgg ctgttgccaa aaactttaac accgtagtgg ctgttaaagc tgccaccttc
    16981 ggtattggtg atgcgtttgt ccgcctgcaa tgccgcctgt tctgcgcggg ccgccagttc
    17041 aatggcttca tccggggaaa cttccgcagg gtggaacaag tcgagatctg gtgcgtcaaa
    17101 ggccagcagc tctttgtctg ccacgccggc acagggatct ggcgaggtat aacgggcaat
    17161 atccagcgcc gcctgtacag tacgggcaat ggcctgcggg cttaaatcgg tggatgatgc
    17221 gctacctttg cggttctggt gataaacagt gatccccagc gcgccatcgc tattgaattc
    17281 aacattctcc acttcaccat aacgcgtgct tacgctaatg ccggtggtct tgctgacggc
    17341 aacttccgca ccgtccgatt tgcctgaggc caactccagc gcagtggaaa ctgcttcttc
    17401 cagaatcttg cgctgcgctt caacttgaga gattactttc attgcaagtg ccataatgta
    17461 gagagtttct ctgaagtcta acagagaacc gtttttcagt gcgcatctta actggtaaca
    17521 ttagcctctt tttttaagga gcctgagatg actaagcagc ccgaagactg gctcgacgac
    17581 gttcccggtg atgacatcga agacgaagac gatgaaatta tctgggtcag taaaagtgaa
    17641 attaaacgtg atgccgagga gctaaaacgc cttggcgcgg aaattgttga tctggggaaa
    17701 aacgcgctgg ataagatccc gttagatgcg gatctgcgcg cggctattga gctcgcccag
    17761 cgtattaaga tggaaggtcg ccgccgccag ttgcagctca tcggtaagat gctgcgccag
    17821 cgcgatgtag aaccgatccg tcaggcgctg gataagctga aaaaccgtca caaccagcag
    17881 gtggtgctgt tccataaact ggaaaacctg cgcgatcgtc tgatcgatca aggtgatgac
    17941 gccatcgctg aggtattaaa tctgtggccc gatgccgatc gtcagcaact gcgtactctg
    18001 atccgcaacg cgaagaaaga gaaagaaggg aataagccgc cgaaatccgc acgccagatt
    18061 ttccagtatc tgcgcgaact ggcggagaat gaagagtaat tttcgttgtt gatgtgagta
    18121 tggtttgccg gatgcggcgt aaacgcctta tccggcaatg ctatctcagg ctgaggccga
    18181 attactgcgc agcttccgcc ttcttcgcca gaccatccag cagtttctga tggatcccac
    18241 caaaaccgcc gttgctcatc accagaatat ggtcgccagg ctgagcggtt ttcaccacca
    18301 tatctgccag cgtatccaca tcgccactcc agtgtgcagg ctgaacgcag gcttctgcca
    18361 cttctgccac ctgccacgga atatgcgccg gttgcagcag gaagacttca tcggcacgac
    18421 ctaatgaagg tgccaaatcg tctttgcaga tccccatttt catggtattc gagcgcggtt
    18481 ccagcacagc aataatgcgc gctgtaccac caactttgcc acgcagcgcc gccagcgttg
    18541 ccagaatcgc cgtcgggtga tgggcaaaat cgtcatatac cgtgacgcca ttcgcttcac
    18601 cacgcaactc cagacggcga cgagcattaa taaacgaacc cagcgcgtta gcggtatctg
    18661 ccggcgctac gccaacatgg cgggccgccg caatcgccat caggccatta tgcatattat
    18721 gttcgcctac cagcgaccat ttcacttcgc ccactttttc gccatccagc aagacttccc
    18781 attcggaagc atcggtggtc agctttttcg cctgccagtg cccctgctca cccaccagct
    18841 cctgctcgct ccagcagccc atcgccatgg tctgtttcag gttgatgtca ttttccggcc
    18901 agataatacg gccctgcccc ggaacgatac gcaccagatg gtggaactgt ttctggatcg
    18961 ctttcaggtc gtcaaagata tcggcgtgat cgaactcaag gttgttaagg atcagcgtac
    19021 gcgggcagta atggacaaat ttagagcgtt tgtcgaagaa ggcgcagtcg tactcatccg
    19081 cttcgataac aaagaagtcg ctttcgccca gacgcgccga aacctcaaag ttccccggca
    19141 caccgccgat cacaaatccc ggtttgtaac cacactgttc cagaatccag gtcgccattc
    19201 ccgcggtggt ggttttgccg tgtgtaccgg caacggccag cacccagcgg tcgcgcagca
    19261 caaaatcgtg cagccactgt ggacctgaca tataagggat gtttttttcc agtaccgctt
    19321 ccacacacgg atttccacgg gtcatggcgt tgccaataat caccagatcc ggctgcggat
    19381 cgagctggct ggcatcgtaa ccctgaatca gttcaatgcc ttgcttctca agtaaggtgc
    19441 tcatcggcgg atacacattg gcgtccgaac ccgttacttc atggcctaac tggcgcgcca
    19501 gcatcgccag accgcccata aacgtgccac aaattcctaa aatatgaatg cgcatacgtc
    19561 actatccttt tttaatctgc cgctcatttt acgcatatgt cgggcaagtg agaaacgcat
    19621 ttcaggataa tccgtaattt gctggcgcga ttcacctgag cgcaacattg agattatttg
    19681 ttaagattgt tgcggtcgct ttactccata aacattgcag ggaaagtttt atgaaaacgt
    19741 taggtgaatt tattgtcgaa aagcagcacg agttttctca tgctaccggt gagctcactg
    19801 ctttgctgtc ggcaataaaa ctgggcgcca agattatcca tcgcgatatc aacaaagcag
    19861 gactggttga tatcctgggt gccagcggtg ctgagaacgt gcagggcgag gttcagcaaa
    19921 aactcgactt gttcgctaat gaaaaactga aagccgcact gaaagcacgc gatatcgttg
    19981 caggcattgc ctctgaagaa gaagatgaga ttgttgtctt tgaaggctgt gaacatgcaa
    20041 aatacgtggt gctgatggac ccactggatg gctcgtccaa catcgatgtt aacgtctctg
    20101 tcggtaccat tttctccatc taccgccgag ttacgcccgt cggcacgccg gtaacggaag
    20161 aagatttcct ccagcctggt aacaaacagg ttgcggcagg ttacgtggta tacggctcct
    20221 ctaccatgct ggtttacacc accggatgcg gtgttcacgc ctttacttac gatccttcgc
    20281 tgggcgtttt ctgcctgtgc caggaacgga tgcgcttccc ggagaaaggc aaaacctact
    20341 ccatcaacga aggaaactac attaagtttc cgaacggggt gaagaagtac attaaattct
    20401 gccaggaaga agataaatcc accaaccgcc cgtatacctc acgttatatc ggttcactgg
    20461 ttgcggattt ccaccgtaac ctgctgaaag gcggtattta tctctaccca agcaccgcca
    20521 gccacccgga cggcaaactg cgtttgcttt atgagtgcaa cccgatggca ttcctggcgg
    20581 aacaagcggg cggtaaagcg agcgatggca aagagcgtat tctggatatc atcccggaaa
    20641 ctctgcacca gcgccgttcg ttctttgtcg gcaacgacca tatggttgaa gatgtcgaac
    20701 gctttatccg tgagttcccg gacgcgtaat ctcctgcgcc tctccacacg gagaggcatt
    20761 tttatcgctg cgcaatgttg actcttgtca ctggcgaact ctgacgattc tcccacagca
    20821 ccgttaaccc acgctgtaat gctataaaaa taaacaacaa aataccgatg gcgattttcg
    20881 tccaccagga actcagcgtg ccgtcaaagt tgatgtaagt ctggatcagt ccctgaattg
    20941 ccacgccaaa aagcgtccca agcaccgtcc cgacgccacc acttaacaac gtaccgccaa
    21001 tcaccaccga cgcgatggcg tccagttcca cacctacgcc cgccagtgca tatccggcct
    21061 gggtataaat cgagaagaca atccccgcca gtgttgccag tccggtggag agcatataaa
    21121 tgcgaatagt ggtgctgcga gtagaaatcc ccatcaggtt cgccgacgtc gcgttgccgc
    21181 caatagcgta cacctgattg ccaaaacggg tacgatgcgc aaggaaaata ccgataacca
    21241 ccaccagcat caacagcccc atcgcactaa ggtgaccgcc gccggggatt ttccacgcaa
    21301 ggcttgagag cgtgtcataa atgggatggt ttatcggaat cgactcttcc gaaacgagat
    21361 agctgacgcc gcgcaaaaag aacatccccg caagcgtaat gataaatgcc gggatcttca
    21421 gggcgtcgat cagaagcccc ataaatgcgc cgaaggcaca gcccatcacc agcactagcg
    21481 gaaacgccag cagcggcgag aggccgaaat cgccaaccac ttttgccaga aacacgccag
    21541 taaaggcgat cactgaaccg acggagagat cgataccgcc agagaggatc acaaaggtca
    21601 taccaacggc aataatcccc agaaaagcgt tatcggtcag gatattgcag atcactcttg
    21661 tggaagcaaa accgggaaac tgcgtcaggc agtagaaata gcccagcaca aagacgccga
    21721 tggtgatcat cagtggcaaa ttacgtttta tcacggctac gtactccttt aatcagactg
    21781 ataaagcgtt gcgactggac aatcagcacg caaagcacca ccaccgcttt caccacctgg
    21841 ttcatctccg gtggaaagcc cgaaagcaaa attccggtgt tcatcccctg aataatcagc
    21901 gcccccacta ccgagagcag caggttaaag cgcccgccca tcagcgatcc gccgccaatc
    21961 accaccgcga gaatggcgtc cagctccagc cataatccgg cgttgttggc atcggcaccg
    22021 cgaatatccg ccgccacgat aatgcccgca atcgccgcac acagcccgct caacacataa
    22081 gtgagcatga cgatgatccg cgtgtttacc ccggcatttt ttgccgcccg aatgttgata
    22141 ccaacggctt cgataaacat ccccagtgcc gttttgcggg tcaacagcca gaacaggaga
    22201 agcgtcagta ccgcaataat gactgccgtt ggcaggaaca acagcgatcc actgccaaac
    22261 catgagagat ccggcgagtt aaacgtgacg atctgtccgg aggtgatcag ttgcgccacg
    22321 ccgcgcccgg cgaccatcag gatcagggtg gcgacaaatg gctgaatttt gaggatcgct
    22381 accagtatgc cgttccacaa tcccgccagg atgccggtgc ccagggcgct taacaaaaca
    22441 atcggcaggc tgacttccgc gaccgtcatc gcagccgttg tggctccggc gatagccatc
    22501 accgccccta cggagagatc aatcccaccg gtggcgatca ccagcgtcat accaatcgcc
    22561 agtaacgcaa cgggggctgc acggttaaga atgtctatgg ggctaccgaa caaacgccca
    22621 tcctgaagca ctacctgcca gaaatgcggg gctaccaggc tgtcgaccag cagcaccagc
    22681 aatagtgcta ccagctgcgg catccccgtc ggccagcgaa agcgcctttt tggcgtagtg
    22741 gtgtccggaa gagattgagg catcacactg ttctccttac gccgcaatgg cgttcatgat
    22801 agccggaacg gaaagctctg ccagccggat ctccgccacc tgtttgcgat cgagcatgat
    22861 gatcacccgg tcggcatagc ccaccagttc ttccagttcg gaggagatca ccagcagcgc
    22921 cagaccatcg gcgcatagcg tttcaatcag gcggatgatc tcggcgtggg caccaacatc
    22981 aatgccacgg gttggctcat cgaggatcag aaattgcggt cgggtcagta gccaacgtga
    23041 aagcaacact ttttgctgat tgccgccgga gagaaattca atcggttgtt cagttgaagg
    23101 tgtgcgaatg ccaagctggc ggataaagcg ttcggcaatc tcttgctgct ctttgcggga
    23161 aatgggtcgt agccagccgc gctgggcctg gagagcgagg atgatatttt cccgcaccga
    23221 ggcggcagcg atgatgccat cggttttcct gtcttccggg cagaagccga tgcccagtac
    23281 cgaagcctga tgtggcgatc gcaggttttg cggtttgcct ttgatcaacg ccgtgccgct
    23341 gtcagcaggt ttgataccga agatcacttc ggcggtttcg gtacgtccgg atcccagcaa
    23401 gcctgccagg ccgacgatct cgccggggcg cacttcgaga tcaaacggtg ctatcgttcc
    23461 ttttttgccg taatttttga acgcggcaac gggtttgtcg ctcaacaatg ttcgcccggc
    23521 acgctgtagc gcgtgggtat ccagctcgcg ccccagcatc atttttacca gttcgatctg
    23581 cggtagctcg cgcgtttccc gacagcctac gaaactgccg ttgcgtaaaa cggtgatccg
    23641 atcgctgacc tgatagatct gatcgagaaa gtgagtgaca aagatcaggc tgacgccgcg
    23701 atcgcgcaac tgacgcatca ggccaaataa tagctccact tcctaggtgt cgaggctggc
    23761 ggtgggttca tcgaggatca gcactttggc ggagagatcg atagcccggc aaatggcgac
    23821 gatttgctgc atcgcgactg aaaagcggtt gagcggttcg cgcacgtcga gggagaaacc
    23881 gtaagatgcc atcagttcgg tggcgtgctt ttccatctct ttgcggcgta gaaggccgaa
    23941 gcgtttgggt tcgcggccta taaatagatt atcagcgacc gacatattgg gtagcaggtt
    24001 gacttcctga tagacggtgc caatgccgag ttgttgcgcg tgggcggtat ttttcggtga
    24061 gataacctgg ccttccagcc agatggtgcc gcgatcggcg tggtatacac cagttaatgc
    24121 tttgattagc gttgattttc ccgccccgtt ttcaccgagc agcgccatga tttcgccacg
    24181 gcgcaggctg aaatcaacgt tgtctaacgc tttgacgccg gggaaaaatt tacttaatcc
    24241 ttcggtgcgg aggatttcct ggtgttggtc tgtcgtcatg gtttcccccg gtgtaaagcg
    24301 tgctcccagt aggcatgata agacgcggta agcgtcgcat caggcttcag tgcaccatcg
    24361 ccggatgcgg cgcgagcgcc ttatccggcc tacgaatcgg catcaggcat agcaaccctc
    24421 aataccccat atttttcttc ttctctaact cttcttttgc ggtatcaggc aggtaaaggg
    24481 tggatttggt taacgtcagc ttttcaggca tggtgccgtc ttttttgtat ttctccagcg
    24541 cgtcaaaagc gggtcccgcc atattcggcg tcagttcaac actggcgttc gcttcgccat
    24601 caatcatcgc tttgtagata tccggtacgc catcgataga acctgtcaga atatctttgc
    24661 ccggtttcag gcccgcttct ttaattgcct gaattgcacc aatcaccatg tcgtcgttat
    24721 gggcgtaaac catgcagatg tttttgccgt tgttttccgc tttgataaag ctctccatga
    24781 cttctttgcc tttactgcgg gtgaagtcac ctgactgcga gcggataatt ttgatatttg
    24841 gcgcattctt aatggcttcg gcaaagcctt tcttacggtc aatggcgacg ctggccccaa
    24901 cggtgccctg cagctccacc acgttgcatg gtttgccatt cacttctttt accagccagt
    24961 caccgatcaa cttaccttcg aggatgttgt cggcagtaac ggtggtcata tagagagatt
    25021 tgtctttcac atcgatggaa cggtcgagca agaagaccgg gatttcggca tctttcgcct
    25081 cttttaatac cggttcccaa cccgtcgcaa ccactggagc gataaagatc gcatccaccc
    25141 cttgtgcaac gaaggaacgt accgctttaa tctggttttc ctgcttttgc tgaccatcgg
    25201 caattttcaa cgtaattccg cgtttttcgg cctcactttt cgccacattg gtttctgcgg
    25261 cgcgccagcc ggattccgat ccgacctgcg aaaatcctac ggttaatgga gcggccaacg
    25321 ccatagacga catggctgcc gagactgcag agactacaag taagcgtttc cacatagggt
    25381 tgtcctcgtc ggggtaatta ttattggtga aaagatgttc gcgaaaaaac tatagacaat
    25441 tcgttatgta acggattgcg ttacatcaca cttcaaaaaa gtaaataaaa cgttaatcac
    25501 aagtttgtaa tcgctttcat ctcactatga aaaatgcggc tacggttatg gattttcctg
    25561 ctctgtatac cgtcttaaaa ctggcgaaaa aggaaaatga agacgaaaac aagcaaagac
    25621 attcggcgcg agttggctat aatactcggc acttgtttgc cacatatttt taaaggaaac
    25681 agacatgagc ttactcaacg tccctgcggg taaagatctg ccggaagaca tctacgttgt
    25741 tattgagatc ccggctaacg cagatccgat caaatacgaa atcgacaaag agagcggcgc
    25801 actgttcgtt gaccgcttca tgtccaccgc gatgttctat ccgtgcaact acggttacat
    25861 caaccacacc ctgtctctgg acggtgaccc ggttgacgta ctggtcccga ctccgtaccc
    25921 gctgcagcct ggttctgtga tccgttgccg tccggttggc gttctgaaaa tgaccgacga
    25981 agccggtgaa gatgcgaaac tggttgcggt tccgcacagc aagctgagca aagaatacga
    26041 tcacattaaa gacgtaaacg atctgcctga actgctgaaa gcgcaaatcg ctcacttctt
    26101 cgagcactac aaagacctcg aaaaaggcaa gtgggtgaaa gttgaaggtt gggaaaacgc
    26161 agaagccgct aaagctgaaa tcgttgcttc cttcgagcgc gcaaagaata aataagttct
    26221 tctagcgcaa taaccctgaa cgccgggctt cggttagtaa gggttttttt atgcccgcga
    26281 taaataaact ctctattcca ccatcattat tctcagcggt tgcaaggctt gaacggtaag
    26341 aacaagcaaa cccgaccacc attttgctgt tcatagccac ttgctggaag ttagccgacc
    26401 tcactcatac tcaccgttca aagcgtgccc ccgttttacc cctgcacatt tgtgaacgcc
    26461 agcagagttt tttatgcgat tgcagatatg gaaagcggct cggagagaaa agcaaaagat
    26521 ggaaaagtta caaaaaaaaa tcgcgagata catcgcataa aacaacgcca cccgaaggtg
    26581 gcgtgctttt attattactt atccctgtct aaccagtcgc cgctttcaat tagctttaat
    26641 ccctcgacgg gtcgttgata aacgtacatc catgcactcc cgtacggcgt ctgaatcaac
    26701 tggcgcgcgt attcaccgcc cctggtgcgc aaggcatcaa gttcggccag cgtggcgttg
    26761 tcaatacgat aaacttcacc gtgtaccgtt ccgttccccg gaactgcgcc tggatagtgg
    26821 cccaggctat acaactggta gttatcgata ctgaaatcgc ccagtaactg ggcattggtc
    26881 atccagtgac tgttgccttg tttgtggcgt aaactgccgt agacaaatat tcgcattgct
    26941 aaaactcgaa ctgatagagc aaatccagtg cctggtctac accagacacg gcttccagat
    27001 atagcttagg catcaggcga taacgtaacg tgagtgttgc tatagagtca aatataccca
    27061 cgccgtattt cacttgcaga cctggcaata catagccgct gaccactacc tgggaggagt
    27121 cgcctactcc ctgggtgtcg agcgctaaat tgcttacgcc aaacgtctcg ccgattttac
    27181 ccacaatctg gccactttgc gcaaccccca gaccaatcag catcgaggtc attgccgcac
    27241 tgtcgctctg atcgctctcc agcccttgtc cacgtagcaa ataagacaat gcagcttgtt
    27301 gcgacatcgc cgggtcagag aagatctccg ctttcggttc gtccgccaga ccagtgacgc
    27361 gaactccggc gattacgtcg tcttctgtag catccgggtt acgaatagct tcaatattaa
    27421 gatacggttg atctggcgga ccagagaaca gtagctcacc cttacgcaca atcagatcct
    27481 gaccataggc atggaagcgc ccttcaggga tgttgatctg cccgttcagg cccagccctt
    27541 gtttgtcctg aacgacgtta agatcgcccg tcagccgcgc tttcaggcca aaggcgtcaa
    27601 tgcgcacatt gttgccaacg tggacaatca ggttactgtt aatcggaatc gacgccgttt
    27661 tcggctcttc cggttgcagg ttatcgttaa gcatcaccac atcgctggag acgcctactg
    27721 cgctttccgg cagatcgtgc accacgatgc gcgcccacgg gacatccacg cgaccatcga
    27781 gggtaaacag gtttggtgta gcctcgaata caacatctgg cgatacatcc attcgtacca
    27841 tcggcggcac ggtgatccgc actttactgc ctttcgccgt tactcgtgcc cgccagtttt
    27901 caatttggct ccagtcggca tcaccgttca ggtagatttc accctgctgg gtccgtactg
    27961 taccggcaag cgtcgagcgc ataccgttaa agttgaccgc aagctggctc ggctgcatat
    28021 caaacggcat aaagttgccg tcgatatcca cacccgtaac ctgaagctga ccaaacaact
    28081 gcgggctttg cacatcacca tccagacgca agttggcact caccatcccc gctgcttttt
    28141 ccccacgagt aaagatgggg tttatcatcg caaggttgaa gttacggata ttgacgttgc
    28201 caccaagatt acggcggcct tgcggatcgg tcaccagcac ctgtccatca aactggccgt
    28261 tattggtcag gcggatggtc cagcccaatt cggcacggtt gttacgcaat tccgccgtca
    28321 gattcagtgt ctgaaacgcc accggcagcg ccgcatcgtt gacggtttgc gttacctgca
    28381 cgttacgccc cgaaagggtg atactgccct gcggcagccc ctctttcgtg gtgtcccagg
    28441 caacatccgc tttacccgtg aagataccgc tggcctgagt ggtttctggc ataaacggtt
    28501 tcagcatggc gaagtcgaag cggttgagat tcaccaccgc acgcccttcg gcccccgcat
    28561 cgatagtttg cggcacgcac agttccgcat tcgggttaag ccagcagtgt ggcccgatgc
    28621 tgattttttg ctccttattg cggtaatcca gcgcaatatc gcgggtcagc gaccacgggc
    28681 cgaccagcgt ctggaagcgg gtattgctaa gagttccctt ccagcgttct tctttgcgat
    28741 caaaacttcc tgccagatta agctgcccgg agacaggctc gccctgaatc cgcaactgta
    28801 gctcgtgctg cttttcgctg cctttggcat tcagggtgac gaggttgata tttacatccg
    28861 gctgcgaaat ttgctcaacg cgtacgtcga gtttcccggc gatctgatcg gtggatttaa
    28921 tgtcgccttc cacgcgaacc tgcgtcacgg aaagttcctg ccagcgcagg ccgcgcgcgg
    28981 tgatatctgc cagtagttgt ggcgcttcca ccgtgccgcg tactttcacc agccctttcg
    29041 ctgtaccgcc aagccccggc agcgcgttat ccagccccgg cgcgttgatg gtggcatcaa
    29101 gattgagatc ttttaccccc agctcgcctt tcacttcggc actgtttggc cccagttcca
    29161 gatgaagccc agggatcatc cactgcatat aactgttgcc tttcagcgtg ccgtcaacgt
    29221 tcactttgtt ctgtttgacg ttaccggtca gtttcagttc tggcacctcc atctgccagg
    29281 tgccgccgta caggctaccg cgggttttaa tcaagccatt gagtttcgac ggccactccg
    29341 ggaactcttt ggcggtgtta atgccattaa gcgttagctc accgcgccaa ctaatggcct
    29401 gctgccagtc gagcaacgcc ttgagttcag ttttcccttc cagcgccgcg acggtgagtt
    29461 tgtcgagatt gacctgctgt tcattacctt tggcatcaag ggtaatggtg gctggcggga
    29521 tctcctgtcc cttcactgcc gtacgcatag agagcgtgta atcggtcatt ttgccggtaa
    29581 gtttcagttt cagatcatcc gcctgatact gcttctcacc agtgaacggc cagtaaagct
    29641 gtttgctgtt cacttccacg ttgagcggca atccggcttc cgccagtcgc gtctgggcgc
    29701 gtaaatccat atccaccgga ccggaaagat taacgccaat ctccagctgt tcgcgcagcg
    29761 cgccgcccac ttttagcttc actttttcac ctttcaacgg ctccacgttc agtgtgctgt
    29821 tgagggtgat atccaccggc cagttgtctg acagctgcgc cgtgccgctg gcgttgacga
    29881 tcccctggtt ggaatcgata tccagggcgt ccagtttagt attgccgtca atgctgctca
    29941 ctttcagcag catggtgcgc acggtgatgt ccgtgtcgcc cgtcacgcgt aactgctcgc
    30001 ctttaaactc ttcaatgttc aggttaagcg gcaaatgcaa gtcggtcatt tccggcaata
    30061 ccgagcgaga aaagagatct ttcagcgttt cgccgagcgg cttttcatcc ggctgcggat
    30121 tttcaatttt cggttcgacc acttcttcct gcgccacttc cgccactttc ggcagagcaa
    30181 tcagcaggcc tttcagcgac gtcggtttca gggtcagggt tttctcctgc cagttcaggc
    30241 cggaggtgaa gtccatcacc gacaccgtgg tgtcatcaat cttgatgttg acgttgtcca
    30301 gcgccacccg tgtcagggtg atgggatacg gcgtggagag atccagcgga ccgctatctt
    30361 cctcttcttc aacctgttca gaaggaggca tttttttact gtcgatgttg acctgaatgt
    30421 ctttcagcgc caggtcatta atacaaacgc tactgttcca caggcactca agaccgaccg
    30481 ccagatgcag attacccgct tttaccgcca cgcctggctg ctcataacga acgtcagaca
    30541 aggtgagatc gcgccagccg ccggtgacct tgccaatatc cagtcctggc acccagcgat
    30601 ccgccgcttt aaatacaaga tgcaggccgc tggtggtgcc caccagaaac gccaccgatc
    30661 ccagcaacag taagataacg ataaccacgc cgaggctgat ttttttccat aaactcataa
    30721 ttctggcccc agaccgatgt aaaactgtaa cccgtgttcg tctttatccg cgaccggtac
    30781 ggcaaaatcg agtttgattg gcccgaccgg cgattcccag cgcacgccga ccccggtacc
    30841 ggttttaaag tcgctgcggc gaatatcgct taccgcttcg ccactatcga caaacaccgc
    30901 gccccaccat tttccggtca cgttgtactg gtattccagc gatccggtta tcaacttcga
    30961 ggcccctttc aggtcaccgt tggcgtattt cggggcgata gatttgtatt tgtagccgcg
    31021 aatactgcga tcgcccccgg cgaaaaaacg cagatccggc ggtactttgt cgaaatcacc
    31081 ggtttcaatc cagcccagcg tgccgcgtgt aacgaaacga tggcgatcgt acagtgtgcg
    31141 gatccagacg ttctgcgcct ggaaaacgga gaaatcgaca tctgagcccc aggccgtgtt
    31201 ggagtagtcg atagagtagc gttgcgagtc gccccaggtt ggcatcaggc caccacgaga
    31261 acgcgtgcgg ctaatcatca ccccaggata aaacagcatc gtggtgttgg taatttcacc
    31321 ctgagtaaag tggtcgagac tccagcgcag gttaatggca cgctgccagc cgctggagag
    31381 atcccagtag cgagaagcca ccagcgtagt ggagtcagat tcggtatcgt tcaggtcagt
    31441 gcgcttaaaa ccgccctgca ccaaataata ttgttccagt ggattcttca gcagcggcat
    31501 tttatagctg aagtcgaggg tctgttccgg cgcggaaata ctggtactgg tggtcaaact
    31561 gtgaccgtat gagttcatcc acggcttttt ccacgtcgct ttcacgcgcg gtcccacgtc
    31621 cgtagagtaa ccgaccccgg tttcgatggt gttttctgtt cgcggcgaaa ccacgcccgt
    31681 caatggtaat actttcgttt cgcgcgcttt atcaaattgt ggagccacca ccaccgagtt
    31741 aaaccagccg gtagcagaaa gtcggcggtt cagttccgcc agatctttcg attcatactc
    31801 atcgccctct ttaaacggca ccagattttg caggtattca tcgcggattt gtgatccttc
    31861 aaaggtcaca tgcccaaagc ggtaacgttc gccactgtta taatcaatat cccagaaggc
    31921 tttatgcagg ccgagcgcaa tgcccagctg cgctttggta aattcgctat cgaaataacc
    31981 tttacgcaac gcaatactgg ttaaggactt tttgaaattt tcataatcgc cctggttcag
    32041 tacagtacca atagccgggc gagtatcgag caatttcaaa tagtctttat cggtccgcgc
    32101 gccgccgcgc aataccacat cggtgccgcc aattaacacc ggcacacctg gcgtgacttt
    32161 ggcgatcaat acctgccgcc ctttctttgg cggtggacgg agatcaaatt caatggtcgg
    32221 ctggtaataa cccagcgctt tcagaccttc acggatggca tcatcgacgc gtgcgcgaaa
    32281 gcggcggtct ggcgtcactt catcactttc aatcgtagaa agctgcgcac gaacgttctt
    32341 ttccagctgt cccgataacc cctcgacctg tagacggacg ttcgcggcga cggcagatcc
    32401 gcttaagcag agtaagctta cacagcataa ctgtcggata tagcgcacat tttctcctga
    32461 atatcctttt ttcctgcccc tggaacgccg ttaaacggct taacaaaaat ccagtaatat
    32521 ggattaaaaa gcagactaaa ccccaaatat ttcttatgtt ttactttaga cctattcacg
    32581 gtggttattg tgtgcaaata cgcctcttgt tacaacctta accccaatga ccgattttcg
    32641 ggagagcgac accatgagtt tatttgataa aaagcatctg gtttcccccg ccgatgccct
    32701 gcctggacgt aacaccccga tgcccgtagc cacgctgcat gcggtcaacg gtcactcaat
    32761 gaccaatgta cctgacggaa tggagattgc catttttgcg atgggttgtt tctggggtgt
    32821 ggagagtctg ttctggcagt tacccggcgt ttacagcacc gccgcaggct ataccggcgg
    32881 ctatacgcca aatccgactt atcgggaagt gtgctccggt gatacgggtc atgccgaagc
    32941 ggtacgcatt gtttacgatc cttccgtcat cagctatgag cagttgctac aggtattttg
    33001 ggagaatcac gatcccgccc agggaatgcg tcagggcaat gaccacggca cgcagtatcg
    33061 ttcagcgatt tatccgctga ccccagaaca ggatgccgca gctcgcgcca gtctggaacg
    33121 ttttcaggcg gcgatgcttg ccgccgatga cgatcgtcac atcaccacgg aaatcgctaa
    33181 cgccacaccg ttttattatg ccgaagatga ccaccagcaa tatctgcata aaaacccata
    33241 tggttactgt ggaattggcg gaattggcgt ctgtctgccg ccggaagcat agcgttacgg
    33301 gtacaaatgt agtttgttga taaagtgctc tttgtctatg cctgatgcgg cttaaacgac
    33361 ttaccaggcc tacaaaatcg tccaaattca atatattgca aggactgcgt aggcctgatc
    33421 ggcatagcgc atcaggcagt attgcattta tcagcagtct gaattttaac cctctggcga
    33481 ctttacagta ccttacgcta tactagccac tgaaaatgcc ggttcacttt cttcgaatcg
    33541 gctttcaatg tgtatttcac acaaattaat caactttccc ttccgaggat ctggcctgaa
    33601 aggtcggata agatatgtta aacagtattt tagtcatact ctgcttgatc gctgtaagtg
    33661 cgttcttctc gatgtccgag atctcgcttg ccgcctcacg caaaatcaaa cttaaactgc
    33721 tggctgatga aggcaatata aatgcccaac gcgttctgaa tatgcaggaa aatcccggca
    33781 tgttctttac cgtggtccaa atcggtctga acgcagtggc gattctcggc ggtatcgtcg
    33841 gtgatgcggc attttctcca gcttttcaca gcctgttctc ccgctatatg tcggcagagc
    33901 tctctgagca actgagcttt attctctctt tctcgttagt gactggcatg tttatcctgt
    33961 ttgcggattt aaccccgaaa cgcatcggta tgattgcgcc agaagcggtg gctttgcgta
    34021 tcatcaaccc gatgcgcttc tgcctgtacg tttgcacccc gctggtgtgg ttcttcaacg
    34081 gcctggcgaa catgatcttc cgtattttca aactgccaat ggtacgtaaa gatgacatca
    34141 cttctgatga catctacgcg gtagtggaag ccggtgcgct ggcgggcgtg ttacgtaaac
    34201 aggaacacga gctgattgaa aacgtctttg agctggaatc ccgtaccgtt ccgtcttcaa
    34261 tgacaccgcg tgaaaacgtg atttggtttg atctccacga agatgagcaa agcctgaaga
    34321 ataaggtggc ggaacatccg cactctaagt tcctcgtctg taatgaagat attgaccaca
    34381 tcatcggtta tgtcgattct aaagacctgc tgaaccgcgt gctggctaac caaagcctgg
    34441 cactgaacag cggcgtacaa attcgcaaca cgctgattgt gccggatacg ttaacccttt
    34501 cagaggcgtt ggaaagtttt aaaaccgcag gtgaagactt cgcggtgatc atgaacgagt
    34561 acgcgctggt ggtggggatc atcaccctca acgacgtgat gaccacgctg atgggcgatc
    34621 tggtcggtca ggggctggaa gagcagattg tcgcccgtga tgagaactca tggctgattg
    34681 acggcggcac cccaattgac gacgtcatgc gcgtgctgga tattgacgag ttcccgcagt
    34741 cgggcaacta cgaaaccatc ggcggcttta tgatgtttat gctgcgtaag atcccgaaac
    34801 gcaccgattc ggtgaaattc gccggctaca aatttgaagt ggtggatatc gataactacc
    34861 gcatcgacca gctgctggtg acccggatcg acagcaaggc caccgccctt tcgccaaaac
    34921 tgcctgacgc taaagataaa gaagaaagcg tcgcgtaacc cccagaaaca tcaacggctc
    34981 ctgaatcagg agccgtctta ttactgcata gcactttggt taagccatct ctgtttgcag
    35041 acgcataacc tgacggttaa cttcggacat cactgacaaa tgcagcttat ccttcacttt
    35101 tgggataaga atcttaccct tatcaaattc aaaagcgcca acgtccttga tgtataaccg
    35161 tccacggaac aggatcttta cgtacttcgc cacctgaagt gggttgtacc gttggaaaat
    35221 tttcattgtt atctcctgct gagtattacg cctgtgcggt gccacaatcg gcccaactat
    35281 tatgagacgc aaattttaat gcttagtgac tatagactat ccgggcaatg tttccaccgc
    35341 gtataacttt ttttacctaa aggttacaat tattcagaat tatcttttta ccgaagcgcg
    35401 gtcttcagta taagcattca tttttcatat gatttgtgcg cttgaccgca aactggcatc
    35461 acacttgcgg gaaattcgat aaatagcaca tatgattaaa actcagatcc aagtggtcgg
    35521 atcacctgca tatcataaga aggaaacacc atgaccctac gcaagattct ggcactcacc
    35581 tgcctgctgt tgccgatgat ggcttccgca catcagttcg aaaccggtca gcgagtgccg
    35641 ccgattggca ttaccgatcg gggcgagttg gtgcttgata aagatcagtt tagctacaaa
    35701 acctggaaca gcgcgcagtt agtgggaaaa gtgcgagtac tgcaacatat tgctggtcgc
    35761 acctctgcaa aagagaaaaa cgcgacgctg attgaagcga ttaaatcagc aaagttaccg
    35821 cacgatcgtt accagaccac caccattgtt aacaccgacg acgcaattcc gggttccggc
    35881 atgtttgtgc gcagcagtct ggagagtaat aaaaagcttt atccctggtc gcagtttatt
    35941 gtcgatagca atggcgtcgc gcgcggtgcc tggcagctgg atgaagaaag ttccgctgta
    36001 gtggtgctgg ataaggatgg tcgcgtgcaa tgggccaaag acggggcgct cacacaggaa
    36061 gaggtgcagc aagtgatgga cctgctgcaa aagttgctca aataatggca ataacataaa
    36121 ttctgcaaaa ataattttcc cctatcgtta tctatgggat aggggaatta ggtctctgag
    36181 ctcttacacc gaactcatac tggtaacgct agttgctctt ttttaaacgc ctcaatggtt
    36241 gatttatatt tctcgcaaat ctcctcttcg gtaatatcac tatctacggc cagattcgca
    36301 cttactatcg catccacttg ttcggctaat tcgacttgtt ggcaacctgc attaaccaga
    36361 aaattataaa taagagagta atcttcatcc tccaaaacaa cagaggaacc attacgaaaa
    36421 cgttcatccc ctccatagat tttaagcgca aagcccaaag attctatgac tatggcaaaa
    36481 ttatcatcaa ttatt
//
LOCUS       DAJVUN010000016        35444 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.016, whole genome shotgun sequence.
ACCESSION   DAJVUN010000016 DAJVUN010000000
VERSION     DAJVUN010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.016"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            43..1215
                     /locus_tag="OQQ76_000629"
     CDS             43..1215
                     /locus_tag="OQQ76_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HCS1967224.1"
                     /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFP
                     LNKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIG
                     AVTAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAY
                     GCKTVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTG
                     WHKSLSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDITTLIRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLMDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA"
     gene            1225..1740
                     /locus_tag="OQQ76_000630"
     CDS             1225..1740
                     /locus_tag="OQQ76_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS1967225.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMP
                     GAVDVDLGLDDSALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVD
                     LMEAHRNALGL"
     gene            1795..2097
                     /locus_tag="OQQ76_000631"
     CDS             1795..2097
                     /locus_tag="OQQ76_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS1967226.1"
                     /translation="MSDKQTEKTIQLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA"
     gene            2112..2231
                     /locus_tag="OQQ76_000632"
     CDS             2112..2231
                     /locus_tag="OQQ76_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1967227.1"
                     /translation="MADIATIFHWPPSVTDVMPLTEVLEWRDKAIQRSGASHE"
     gene            2224..5301
                     /locus_tag="OQQ76_000633"
     CDS             2224..5301
                     /locus_tag="OQQ76_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1967228.1"
                     /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIK
                     QLDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQR
                     LAVQRLEERQKKLQQQTALVRAELYRAGISANDGASATARITRETMRYNRQLSEQEAR
                     LRRVGEQQRKMHAARGAYARRLEVRDRIAGAGATTTAAGLAMGAPVMAAVKSYTSMED
                     AMKGVAKQVNGLRDDNGNRTARFYEMQGAIKAASEQLPMENGAVDFAALVEGGARMNV
                     ANPDDSWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGD
                     ALNYLDDNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANA
                     MVRELSIATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLS
                     AMTMLFGKEFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLV
                     KTGAQNTFSSLGETLRQPLMDILYTVKSVTGALRRWVEANPELTGTLMKVAAVVAAVT
                     VGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTAAVTRTSNALSWLAGAPLALLR
                     RGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMN
                     PLAVLRGGLAATGTVLRMLASGPLAMLRVALYAVSGLLGALLSLIGLVVTALAGVALV
                     VWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLLTPV
                     KSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKL
                     PESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIV
                     NGPANVTSRRNTAALAAVVAGMMGVAATPAELPPLHPLALPAKGGEAMVSRAATVPPV
                     QRIEAPMQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA"
     gene            5298..5783
                     /locus_tag="OQQ76_000634"
     CDS             5298..5783
                     /locus_tag="OQQ76_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1967229.1"
                     /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLG
                     PDNDMLTLSGVLMPEVTGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTK
                     TEFFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQGTATSALSDISKTVGGLL
                     S"
     gene            5780..6880
                     /locus_tag="OQQ76_000635"
     CDS             5780..6880
                     /locus_tag="OQQ76_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS1967230.1"
                     /translation="MNFSSELLNKGNKTPAFSISIEGRDITTVLDNRLMGLTLTDNRG
                     FEADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLT
                     IRARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKLVEHIDQTN
                     ESDGSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGDSHRFTL
                     ADRGAYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVL
                     NRTYANRSNAERAAKMQWELLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAE
                     WTITTLTHTVSPDNGFTTSLELEVRIDDFEME"
     gene            6971..7189
                     /locus_tag="OQQ76_000636"
     CDS             6971..7189
                     /locus_tag="OQQ76_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001504085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HCS1967231.1"
                     /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHET
                     FVRSIATPKESNPVQPHPMKSGQVALSL"
     gene            complement(7425..9110)
                     /locus_tag="OQQ76_000637"
     CDS             complement(7425..9110)
                     /locus_tag="OQQ76_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate:alanine antiporter"
                     /protein_id="HCS1967232.1"
                     /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL
                     VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS
                     ALVIALGLGKLFVWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLS
                     LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY
                     RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP
                     DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV
                     IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI
                     GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM
                     VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA
                     MMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG"
     gene            9380..9757
                     /locus_tag="OQQ76_000638"
     CDS             9380..9757
                     /locus_tag="OQQ76_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YbjM"
                     /protein_id="HCS1967233.1"
                     /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF
                     FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW
                     CALGALCFLFISSLFKPQHRKNQ"
     gene            complement(9787..10044)
                     /gene="grxA"
                     /locus_tag="OQQ76_000639"
     CDS             complement(9787..10044)
                     /gene="grxA"
                     /locus_tag="OQQ76_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 1"
                     /protein_id="HCS1967234.1"
                     /translation="MQTVIFGRSACPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT
                     KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA"
     gene            10204..10491
                     /locus_tag="OQQ76_000640"
     CDS             10204..10491
                     /locus_tag="OQQ76_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1418 family protein"
                     /protein_id="HCS1967235.1"
                     /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV
                     QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH"
     gene            10475..11185
                     /gene="nfsA"
                     /locus_tag="OQQ76_000641"
     CDS             10475..11185
                     /gene="nfsA"
                     /locus_tag="OQQ76_000641"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase NfsA"
                     /protein_id="HCS1967236.1"
                     /translation="MTPTIELICGHRSIRHFTDEPISEAQCEAIINSARATSSSSFLQ
                     CSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLL
                     LGVVDTAMMAQNALTAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWP
                     ADNPDLKPRLPASILVHENSYQPLDKDALAQYDEYYLTRGSNNRRDTWSDHIRRTIIK
                     ESRPFILDYLHKQGWATR"
     gene            11246..12148
                     /gene="rimK"
                     /locus_tag="OQQ76_000642"
     CDS             11246..12148
                     /gene="rimK"
                     /locus_tag="OQQ76_000642"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HCS1967237.1"
                     /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA
                     ASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR
                     SMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA
                     ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGG
                     AASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI
                     DIAGKMIRWIERYATTEYCLKTGG"
     gene            12236..12712
                     /locus_tag="OQQ76_000643"
     CDS             12236..12712
                     /locus_tag="OQQ76_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HCS1967238.1"
                     /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF
                     DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC
                     QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH"
     gene            13063..14175
                     /gene="potF"
                     /locus_tag="OQQ76_000644"
     CDS             13063..14175
                     /gene="potF"
                     /locus_tag="OQQ76_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HCS1967239.1"
                     /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD
                     TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
                     KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW
                     DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR
                     PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF
                     FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPG
                     IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK"
     gene            14270..15403
                     /gene="potG"
                     /locus_tag="OQQ76_000645"
     CDS             14270..15403
                     /gene="potG"
                     /locus_tag="OQQ76_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter ATP-binding subunit
                     PotG"
                     /protein_id="HCS1967240.1"
                     /translation="MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYK
                     GEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYAL
                     FPHMTVEQNIAFGLKQDKLPKAEIASRVHEMLGLVHMQEFAKRKPHQLSGGQRQRVAL
                     ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG
                     RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERHEDGLVLYSPGLV
                     HPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHV
                     RLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV"
     gene            15413..16366
                     /gene="potH"
                     /locus_tag="OQQ76_000646"
     CDS             15413..16366
                     /gene="potH"
                     /locus_tag="OQQ76_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotH"
                     /protein_id="HCS1967241.1"
                     /translation="MNTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF
                     LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS
                     LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN
                     NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA
                     LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ
                     EFFNNRDWPVAAAVAIIMLLLLIVPIMWFHKHQQKSVGEHG"
     gene            16363..17208
                     /gene="potI"
                     /locus_tag="OQQ76_000647"
     CDS             16363..17208
                     /gene="potI"
                     /locus_tag="OQQ76_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HCS1967242.1"
                     /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW
                     AGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGF
                     AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS
                     SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV
                     SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ
                     RARHG"
     gene            17268..17756
                     /locus_tag="OQQ76_000648"
     CDS             17268..17756
                     /locus_tag="OQQ76_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjO family protein"
                     /protein_id="HCS1967243.1"
                     /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF
                     NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI
                     TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ
                     LQ"
     gene            17797..18924
                     /gene="rlmC"
                     /locus_tag="OQQ76_000649"
     CDS             17797..18924
                     /gene="rlmC"
                     /locus_tag="OQQ76_000649"
                     /EC_number="2.1.1.189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HCS1967244.1"
                     /translation="MQCALYDAGRCRSCQWITQLIPEQLSAKTADLKNLLADFPVEEW
                     CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK
                     PFIACAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQE
                     QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA
                     SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAA
                     ELGLTRLQFQALDSTQFATAQGEVQELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC
                     NAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ"
     gene            complement(19099..19830)
                     /gene="artJ"
                     /locus_tag="OQQ76_000650"
     CDS             complement(19099..19830)
                     /gene="artJ"
                     /locus_tag="OQQ76_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein ArtJ"
                     /protein_id="HCS1967245.1"
                     /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV
                     GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT
                     PYYENSAVVIAKKDTYKAFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF
                     IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE
                     KLNNALAAIKADGTYQKINDQWFPQ"
     gene            complement(20121..20789)
                     /gene="artM"
                     /locus_tag="OQQ76_000651"
     CDS             complement(20121..20789)
                     /gene="artM"
                     /locus_tag="OQQ76_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HCS1967246.1"
                     /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL
                     VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS
                     AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK
                     STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF
                     ERRN"
     gene            complement(20789..21505)
                     /gene="artQ"
                     /locus_tag="OQQ76_000652"
     CDS             complement(20789..21505)
                     /gene="artQ"
                     /locus_tag="OQQ76_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HCS1967247.1"
                     /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESEKWRPVA
                     WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS
                     PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH
                     ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL
                     SQYILKRIDLRATRFERRPS"
     gene            complement(21512..22243)
                     /gene="artJ"
                     /locus_tag="OQQ76_000653"
     CDS             complement(21512..22243)
                     /gene="artJ"
                     /locus_tag="OQQ76_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1967248.1"
                     /translation="MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIV
                     GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT
                     PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK
                     LDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ
                     KLNTALEKVKKDGTYETIYNKWFQK"
     gene            complement(22261..22989)
                     /gene="artP"
                     /locus_tag="OQQ76_000654"
     CDS             complement(22261..22989)
                     /gene="artP"
                     /locus_tag="OQQ76_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HCS1967249.1"
                     /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL
                     LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN
                     LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
                     QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH
                     IVEQGDASCFTEPQTEAFKNYLSH"
     gene            complement(23207..23722)
                     /locus_tag="OQQ76_000655"
     CDS             complement(23207..23722)
                     /locus_tag="OQQ76_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1967250.1"
                     /translation="MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPGNV
                     AQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPES
                     ARVASASTIPNRDARNIPLRVDLKQGDQSWQDEVLMIQEGQCWVIDDVRYLGGSVHAT
                     AGTLRQSIENR"
     gene            23848..24171
                     /locus_tag="OQQ76_000656"
     CDS             23848..24171
                     /locus_tag="OQQ76_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HCS1967251.1"
                     /translation="MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG
                     GRSGAYEKELRKAREIAFEELGSQARALGVDAVVGIDIDYETVGQNGSMLMVSVSGTA
                     VKTRR"
     gene            24168..24998
                     /gene="amiD"
                     /locus_tag="OQQ76_000657"
     CDS             24168..24998
                     /gene="amiD"
                     /locus_tag="OQQ76_000657"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiD"
                     /protein_id="HCS1967252.1"
                     /translation="MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRI
                     KVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI
                     SAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKP
                     ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL
                     LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
                     "
     gene            complement(24995..26008)
                     /locus_tag="OQQ76_000658"
     CDS             complement(24995..26008)
                     /locus_tag="OQQ76_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415389.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1967253.1"
                     /translation="MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMG
                     AEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV
                     AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMFSQANPQ
                     TRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLA
                     SQEACDKLPSGRVYNITNGEHRTLCSIVQKLIDELNIDCRIRSVPYPMLDMIARSMER
                     LGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGK
                     LPR"
     gene            complement(26107..27537)
                     /locus_tag="OQQ76_000659"
     CDS             complement(26107..27537)
                     /locus_tag="OQQ76_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2867 domain-containing protein"
                     /protein_id="HCS1967254.1"
                     /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL
                     ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVP
                     VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR
                     DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQ
                     FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL
                     RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT
                     SASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVD
                     SWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWL
                     LMIPAHLFIFRGMAKQIARLAEQSTD"
     gene            complement(27548..28549)
                     /gene="ltaE"
                     /locus_tag="OQQ76_000660"
     CDS             complement(27548..28549)
                     /gene="ltaE"
                     /locus_tag="OQQ76_000660"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HCS1967255.1"
                     /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA
                     ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPHP
                     IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN
                     LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI
                     RWRKMAGGGMRQSGILAAAGMYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTN
                     MLFVRVGEENAAALGEYMKVRNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR"
     gene            complement(28586..30304)
                     /gene="poxB"
                     /locus_tag="OQQ76_000661"
     CDS             complement(28586..30304)
                     /gene="poxB"
                     /locus_tag="OQQ76_000661"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HCS1967256.1"
                     /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW
                     MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI
                     PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
                     GDVALKPAPEGATTHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE
                     LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF
                     PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDK
                     ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK
                     MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK
                     LPVKIVIFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD
                     EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA
                     KTNWLR"
     gene            complement(30437..31405)
                     /gene="hcr"
                     /locus_tag="OQQ76_000662"
     CDS             complement(30437..31405)
                     /gene="hcr"
                     /locus_tag="OQQ76_000662"
                     /EC_number="1.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH oxidoreductase"
                     /protein_id="HCS1967257.1"
                     /translation="MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYAL
                     VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG
                     EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEW
                     RNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALG
                     VTRFFKEKFFTPVAEAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG
                     VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA"
     gene            complement(31417..33069)
                     /gene="hcp"
                     /locus_tag="OQQ76_000663"
                     /gene_synonym="priS"
     CDS             complement(31417..33069)
                     /gene="hcp"
                     /locus_tag="OQQ76_000663"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HCS1967258.1"
                     /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG
                     LSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC
                     LAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK
                     GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSIL
                     DAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP
                     AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVSAYDDRIWTRS
                     IVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVS
                     REKLRHIFLLGGCDGARGERHYFTDFATIVPDDCLILTLACGKYRFNKLEFGDIEGLP
                     RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK
                     NIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA"
     gene            complement(33213..34112)
                     /gene="lysO"
                     /locus_tag="OQQ76_000664"
     CDS             complement(33213..34112)
                     /gene="lysO"
                     /locus_tag="OQQ76_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415395.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lysine exporter LysO"
                     /protein_id="HCS1967259.1"
                     /translation="MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFM
                     GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRI
                     AMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQ
                     IVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFG
                     PVIGSAAFFNDLARELIAIMLIPGLIRRSCSTALGLCGATSMDFTLPVLQRTGGLDMV
                     PAAIVHGFILSLLVPILIAFFSA"
     gene            complement(34606..35301)
                     /gene="aqpZ"
                     /locus_tag="OQQ76_000665"
     CDS             complement(34606..35301)
                     /gene="aqpZ"
                     /locus_tag="OQQ76_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HCS1967260.1"
                     /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG
                     LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI
                     ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATAKFAPAG
                     FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII
                     GGLIYRTLLEKRD"
BASE COUNT         8551 a         9039 c         9606 g         8248 t
ORIGIN      
        1 caacataggg cgaagcctaa tccaatcagg aggttcgcca ctatggctca ggattaccac
       61 cacggggtgc gcgttgttga agtcaacgaa ggcacccgat ccattaccac ggtgagcacc
      121 gccatcgtgg gtatggtctg cacgggcgat gatgccgatg caaaaatgtt tcctcttaat
      181 aaacctgtgc tgatcactga tgtgctgacc gccagcggta aagcgggtga gtctggcacg
      241 ctggcccgtt cgctggatgc catcgctgac caggcaaaac ccgtgaccgt tgttgtgcgt
      301 gtgccgcagg gtgaaacgga agaagaaacc acaaccaata tcattggcgc agtgaccgcc
      361 gagggtaaaa aaacaggtat gaaagccctg ttatctgccc agtcacagct cggcgttaaa
      421 ccgcgcattc tcggcgtgcc aggtcacgac acgaaggcgg tagctactga gttgctgagc
      481 gtggcgcaaa gcctgcgtgg atttgcttac ctgtcagcgt atggttgcaa gacggtgcag
      541 gaagcaatca cttaccgtga aaacttcagt cagcgtgaag gaatgctgat ctggcccgac
      601 tttactggct gggacacggt gctgaatgcc gaagcaacgg cttatgccac cgcccgtgcg
      661 ctcggtctgc gcgctaaaat tgatgagcag accggatggc acaaaagcct gtccaacgtg
      721 ggcgtgaacg gtgtcaccgg aatttctgct gatgtgttct gggatctgca ggacccggca
      781 accgatgcag gtctgcttaa ccagaacgat atcaccacgc ttatccgcaa agacggtttc
      841 cgcttctggg gttcccgctg tctgagcgat gatccgctct ttgccttcga aaactacacc
      901 cgcacggcgc aggtgctgat ggacacgatg gcagaagcgc acatgtgggc ggtggacaaa
      961 ccgctgaacc cgtcgctggc ccgcgacatt atcgaaggta tccgcgccaa aatgcgtagc
     1021 ctggtcagtc agggctatct cattggtggt gattgctggc tggacgagtc ggtgaacgat
     1081 aaagacacgc tgaaagccgg gaaactcacc atcgattacg actacacgcc agtgccgcca
     1141 cttgaaaacc tgatgctgcg tcagcgcatc accgatcagt acctggtgaa tttctccagc
     1201 caggtcagcg cgtaagggga caacatggct ttaccacgca aattaaaaca cctgaacctg
     1261 tttaacgacg ggaacaactg gcaggggatc gttgagtcgc tgacgctgcc gaaattcacc
     1321 cgcaaatatg agaagtatcg cggcggcggt atgcccggag cggtggatgt ggatctggga
     1381 ctggatgaca gtgcactgga tacagaattt tccattggtg gtactgaact gctgctgttt
     1441 aagcagatgg gcaaagccac ggtggatggc atccagctgc gctttaccgg ctctattcag
     1501 cgtgatgata ccggggaagt gcaggccgtg gagcttgtgg tgcgtggacg tcacaaagaa
     1561 gtagattccg gcgagtggaa gacgggcgaa agcaacacta ccaaagtgac cagtaccaac
     1621 agctacgcga agctgaccat caatggtgag gtgctctatg aagtggacct gatcaacatg
     1681 gtggaaattg tggacggtgt ggacctgatg gaagcgcacc gcaacgccct cggcctctga
     1741 tgtatctgaa cggcgcggaa tgccgcgcca gaacctaatt tacaggacaa caaaatgagc
     1801 gataagcaga ctgaaaagac cattcaactg gatactccca tcatgcgcgg taaaacagaa
     1861 attaccgaaa ttgtgttgcg taaaccgcag tccggtgcgc tgcgcggcac acgcctgcag
     1921 gccattatgg atatggatgt gaacgcgatg atgaccgtga tcccccgcat ctccagtccg
     1981 gcactgactg cacaggaaat tgcagagatg gacccggcag atctcactgc catgtcggtt
     2041 gaggttgtca cttttttgtt gaagaagtcg gtgcttgccg gtttaccgac agcctgacgg
     2101 ttgacgatct ggtggctgat atcgccacca tctttcactg gccgccatcc gttactgacg
     2161 ttatgccgct gaccgaagtg ctggaatggc gggataaagc gattcagaga agcggggcca
     2221 gccatgagtg acaataacct gcgtctgcag gtgattctta atgcggttga caaactcacc
     2281 cgcccatttc gatccgcgca ggccagttca agagaactgg ctgctgctgt caaaaaatcc
     2341 cgcgatgcaa taaagcagct tgatcaggcc gggagcagtc tggacagctt ccgaaagctg
     2401 caggcagaaa atcagaaatt aggcgacagg ctgaactatg cccgccagcg tgcaaatttg
     2461 ctcagtcagg aactgggagc gatggggccg ccttcgcaac gtcaggttgt tgctctgggc
     2521 cgtcaacggc tggctgttca gcgcctggaa gaacgccaga aaaagctgca gcagcagacg
     2581 gcgcttgtgc gtgcagaact ttatcgtgct ggtatttcag ctaatgatgg cgccagtgcg
     2641 acggcccgca ttacccgtga aacgatgcgt tataacaggc agctttctga gcaggaagcg
     2701 aggttacgac gtgtcgggga gcaacagcga aaaatgcacg ccgcccgggg ggcttacgcc
     2761 aggcgtcttg aggtaaggga tcgtattgca ggtgccggag ccaccaccac ggctgcaggg
     2821 ctggcaatgg gcgcaccagt gatggcggca gtaaaaagct ataccagcat ggaagatgcc
     2881 atgaaaggtg tggcaaagca ggtcaatggt ctgcgtgacg ataatggcaa ccgcactgcg
     2941 cgtttttacg aaatgcaggg tgccatcaag gctgccagcg aacagttgcc gatggaaaac
     3001 ggtgctgtgg acttcgccgc actggttgaa ggtggtgcgc gcatgaacgt cgcaaaccct
     3061 gacgacagct gggaagacca gaaacgtgac ctgctggcct tcgccagcac ggcggcaaag
     3121 gcggcaacag cctttgaact gccagcggat gaactgtcag aaagtctggg gaaaatcgcc
     3181 cagctctaca aaatccctac ccgcaatatt gagcagctcg gtgatgcgct gaactatctg
     3241 gatgataacg ccatgtcgaa aggggcggac atcattgatg tcatgcaacg cctgggcggt
     3301 gtggctgacc gtctggatta tcgtaaagcg gcggcgctgg gttccacctt cctgacactc
     3361 ggcgctgcgc ctgaggttgc agccagtgca gcaaacgcga tggtgcgtga attgtccatt
     3421 gccaccatgc aaagcaagag tttctttgaa gggatgaatc tgctgaaact caatccagaa
     3481 gtgattgaaa agcagatgac gaaggatgcg atgggaacta tccagcgggt gctggagaag
     3541 gtgaatgcgc tgccacagga taagcgcctg tctgccatga ccatgttgtt tggtaaagag
     3601 tttggcgatg acgcagcgaa actggcaaac aacctgccgg aacttcagcg ccagttaaaa
     3661 ctgactgcgg gcaatgatgc gctcggttcc atgcagaaag aatccgacat caacaaggat
     3721 tcactttctg ctcagtggtt gctggtcaaa accggagcac agaacacctt cagcagcctg
     3781 ggggaaacgc tgcgccagcc gctgatggat attctgtaca cggtgaaaag cgtcacgggg
     3841 gcgttgcgtc gctgggtgga agctaacccg gaactgacgg gcactctgat gaaagtagcc
     3901 gctgtggtag ctgccgttac cgtgggcctc ggcaccttag cggtggcgct ggctgcagtg
     3961 ctggggccgc tggcagtcat ccgtctggga ttctctgtgc tgggtatcaa aacgttacct
     4021 tccgttacgg cagcagtaac ccgaaccagc aacgcgttgt cctggctggc tggcgcacca
     4081 ctggcactgc tgcgacgcgg gcttgcttca tcgggcaacg ctgcaggttt acttactgcg
     4141 ccgttgtcgt ctttgcgccg cacggcatca ctgacgggaa atgtcctgaa aactgtagca
     4201 ggtgcgccgg ttgcactttt gcggtctgga ttatccggtt tacgtgcggt tgctgtgatg
     4261 tttatgaatc cactggcggt actacgcggc ggactggctg ccacaggcac ggtgctgcgt
     4321 atgctcgcat ccggtccact ggcgatgctg cgcgttgccc tgtatgccgt ctctggtctg
     4381 ttaggtgctc tgctcagtct gataggtctt gtggttactg cactggcggg tgtggcgctg
     4441 gttgtctgga aatactggca gcccatcacc gcatttctcg gtggcgtggt ggaaggattc
     4501 aaagcggcgg caggtcctgt cagtgccgcg ttcgaaccgc ttaagcctgt gttccagtgg
     4561 attggcgaca aagtacaggc gctgtggggc tggtttactg atctgctgac gcccgttaag
     4621 tcgacctctg ccgaactgca gagtgcagcg gcaatggggc gacgattcgg ggaggctctg
     4681 gcggaagggc tgaatatggt catgcatccg ctggactccc tgaaatccgg cgtttcctgg
     4741 ttgctggaga aacttggcat tgtcagtaaa gaggccgcaa aggcgaaact gccggaaagc
     4801 gtgacgcgtc agcaacctgc gacggtgaat gcagacggta aagtgatgat gccatcgggt
     4861 ggttttccgt catggggata tggctttgcg gggatgtatg acagcggcgg gtatatcccg
     4921 cgcgggcagt ttggcatcgt cggtgaaaac gggccggaaa ttgttaacgg cccggcaaat
     4981 gtgaccagcc ggagaaatac agctgcactg gctgccgttg ttgccggaat gatgggtgtt
     5041 gctgctacgc cagcagagct tccaccgttg caccctttgg cacttcccgc gaaaggcggt
     5101 gaagcgatgg tgagtcgtgc agccactgtg ccgcccgttc aacggattga ggcaccgatg
     5161 cagatcatca ttcaaacgca gccaggacaa agtgcgcagg atattgcgcg ggaggtggcc
     5221 cgccagcttg atgaacgtga acgcaggctg aaggcaaaag ccaggagtaa ctacagcgat
     5281 caggggggat acgacgcatg atgatggtgc tgggattgta cgtgtttatg ctgcgcaccg
     5341 tgccgtatca ggagctgcag tatcaacgca gctggcgaca tgcggcaaac agccgggtaa
     5401 accgacgccc gtcaacgcag tttctgggac cggacaacga catgctgacg ctttctggtg
     5461 ttcttatgcc ggaggtaacg ggcggcaggc tgtcgttgct ggctctggag cagatggcag
     5521 aacagggaaa agcatggccc ctgattgaag gcagcggcac gatttacggc atgtatgtga
     5581 ttgagggact gaatcagact aaaacggagt ttttccgcga cggtatgccg cgccggattg
     5641 agttcaccct gtcgctaaaa cgcgtggatg aatccctgtc cgatatgttc ggtgatctca
     5701 gtgcgcaact gaataatctg cagggaacgg caacatctgc cttaagcgat atcagtaaaa
     5761 cggtgggagg gctgctgtcg tgaatttcag ctctgaactg cttaacaaag gcaacaaaac
     5821 tccggcattc agcatcagta ttgaaggcag ggatatcacc actgtgctgg acaaccgcct
     5881 gatggggctg acgctgacgg ataaccgggg ctttgaagcg gaccagcttg atctggagct
     5941 ggacgacgcc gatggaaaaa tcgtgctgcc gcgccgtggg gctgtcatta cgctggcgct
     6001 gggctggaag ggacagccgc ttttcccgaa aggggcattc acggtggacg agattgaaca
     6061 cactggcgca ccggatcgcc tgactatccg ggcgcgaagt gctgattttc gtgaaacgct
     6121 gaatacccgc cgtgaaaagt cgtggcacaa gaccaccgtt ggggaagtgg tgaaggaaat
     6181 agctgcgcgg cacaaactga agatggcatt gggtgaagac ttgtcggata aactcgtgga
     6241 gcatatagac cagactaatg agagtgacgg cagttttttg atgcggctgg cgcgccagta
     6301 cggtgctatt gcgtcggtga aaaatggcaa tctgttattc atccggcagg ggcagggtaa
     6361 aagcgccagc ggtaaaccac taccggtgat cactatcaca cgcaaggacg gcgacagtca
     6421 ccgctttacc ctggcagatc gcggagctta cacgggcgtc attgccagct ggttgcatac
     6481 ccgcgaaccc gcgaagaaag aaagcaccac ggtgaagcgt aagcgcagga ctaagaagca
     6541 gaagaaagag ccggaagcga agcagggcga ttacctggtg ggtacggatg aaaacgtgct
     6601 ggtacttaat cgcacttatg ccaaccggag caacgccgaa cgggcagcga aaatgcagtg
     6661 ggaactcctg caacgcggcg ttgcatcatt ctcgctacaa ctggcggaag ggcgggcaga
     6721 tctctacaca gaaatgcctg tgaaggtcag tggctttaaa cagccgatag atgatgcgga
     6781 atggaccatt acgactctga cgcatactgt cagcccggat aacggtttta cgaccagtct
     6841 ggagcttgaa gtgaggattg atgatttcga aatggaatga ttcttcgcaa tggagaactt
     6901 ttaagcttgc aaaatggaat aatgcggtat cattattgtg aatttagcaa aaatggggag
     6961 aactcgaaaa atgatgattt gcccactgtg tggaagtgcc gcccatactc gcagcagttt
     7021 tcaggtatct tcattgacca aagagcgtta caaccagtgc cagaacatta actgcagcca
     7081 tacttttgtt acccatgaaa cttttgttcg ttcgattgca acgccaaaag agtcaaatcc
     7141 ggttcagccg catccaatga aatcaggaca ggtggcgctc tctctttgac gctgccgcca
     7201 ttttgtcgcc atcgttaaaa aacagtgctt ctaacatcat gattttaaaa ggcataaatt
     7261 tcagacaaca aaaaacccat caaccttgaa ccgaaatggc ggggttgatg ggctccacaa
     7321 aatggggaca tcaaagaaaa gcagtggcac taattaagac tgatgccctg cggaaaagtt
     7381 ctgcggttgt gcaaaaaaat ttcattttca gggcaacttc agttttatcc taatcctggc
     7441 cataccataa cgatgattgt ccctgccagc gtcagcagga cgttggcgat tgcgtaggtg
     7501 cccgcatagc ccagcgcagg gatgttactg cgagctgtat cactgatgat ctccattgcc
     7561 ggcgcgcagg tgcgtgcgcc catcattgcg ccgaacaaca gtgcgcggtt cattcgcaat
     7621 acataagcac cgaacaagaa acagataacc acgggcacaa gactgacaat taatccggca
     7681 atcaacatct gaccgccaat cgcgcccagg ccgttattaa taccgctacc ggcgctcaga
     7741 ccaacgcctg ccataaacac catcaagccg aactctttca ccatgcttaa tgcaccttgc
     7801 ggaatgtaac cgaaggtcgg gtggttagca cgcataaagc ccagcataat tccggcgaat
     7861 aacaacccgg cagcgttccc catgccgaaa ctgaatgtgc tgaactggaa ggtgatcatc
     7921 ccgatcatca gcccaataac aaagaaggcg caaaatgcca gcaggtcagt gacctggctg
     7981 tgaatcgaga taaagccgat gcgatcggcg atggttttta cgcgacgggc atcaccgctg
     8041 acttgtaaaa cgtcaccttt gttaagcacg acgttgtcat ctatcggcat ctcaatctgg
     8101 ctacgaatga cgcggttaag gaagcaaccg tgatcggtca acttcagttg tgcgagacgt
     8161 ttacctacag cgttatggtt tttaacgacc acttcttcag tgacgatacg catgtcgaga
     8221 aggtcacgat cgaaaacttc tttaccgtta cggaagctgg gatcgagtcg ggcatgggcg
     8281 tcgggatagc ctaccaacgc tatttcatcg cccatttgta gcacggcatc accgtctgga
     8341 tttgccagaa tcccgttacg tcgaatacgt tcaatgtagc agccggtttg tcgataaata
     8401 cccagttcac gcagattttt gccgtcggtc caggccacca gctccgggcc gacgcgatag
     8461 gcgcggatca ccggtaaata aaccttacgg ttggcatcag tgtccaggcc acgttcgcgg
     8521 gcgatttgct gggcgctggt ctgtaagtcc tgatgctgca atttcggcaa gtaacgcgca
     8581 ccaacaatca aactcaccag accgattaaa taggttaagg catacccgag gctcagatta
     8641 tccagtgcca gtgagagctg cctgctttcc atgccggaat gacgcagtgt atcgccagca
     8701 ccgaccagaa ccggtgtcga cgtcatagag cctgctaaca taccggccgt caggccaata
     8761 tcccagacaa acagcttacc taaccctaag gcgatcacca gcgcactgcc aaccatcacc
     8821 agtgctaaca ttaggtaatt tttcccatcg cgaaaaaaaa tggaaaaaaa gttcggtccg
     8881 gcttcgaccc cgacgcagaa aataaacagc ataaagccaa gattaagcgc atcggtgtta
     8941 atgctgaaat gttgttggcc taataacagc gatacgacta aaacgccaat ggaattaccc
     9001 agttggatcg aaccaagtcg taactttccg agacatagcc caagcgcgag gaccacaaat
     9061 aataacagaa tgtaattccc atttaacaat tcggcgacgt ttatattcac ggaggctaac
     9121 ttcttgttta ctagtaagct gttgaaagaa atggtaattt acgataatgt tttttaccag
     9181 aattcagggc gcagattcat tcagcgcacc taaacgatag taaagtaaca atatatttta
     9241 ctagtgtaat cacattaggt atcaacggct atatgaattg cgttggccta tattagcatg
     9301 gaatgcgaag cggctttatc ttactgaacg ccacactggc gaaaaatgtg ttcgatagac
     9361 gcagtgtcag gaggaacgag tgaaacataa acaacgttgg gcgggggcaa tctgctgttt
     9421 tgtcctcttc attgtggtgt gcctttttct ggcgacgcac atgaaaggcg cttttcgggc
     9481 tgccgggcat cctgaaatcg gcttgctgtt tttcattctt cctggagcag ttgccagttt
     9541 cttttcacag cgtagagaag tcctgaaacc tctatttggc gcaatgctgg cggcaccctg
     9601 ttcaatgctc attatgcggc tgtttttttc accgacgcgc tcattctggc aagagctggc
     9661 atggttacta agcgcggtgt tctggtgtgc gctgggggca ctgtgtttct tatttatcag
     9721 tagtttgttt aaaccacagc acagaaaaaa tcagtaaagc cctcaacgcg agggcttgtc
     9781 agacgatcag gcgtccagat tttctttcac ccatgcagca aaatcggtat agccgccgat
     9841 atgttgctga tcgacaaaaa tctgcggcac ggtttctacg ggtttacctg ccttttgttg
     9901 tagatcttct ttagtgatcc cttccgcacg aatatctaca tactgatact gaaaatcatc
     9961 gcgttcattg ctcaatttct cagccagatc ttttgcacgc acacagtaag ggcaagccga
    10021 acgaccaaaa ataacggttt gcattatttc tctcctcata gatttatgcc tgtaatgatc
    10081 acgctaaaat gtattcgctg aaagtaggtt taacctgttg cattaattgc taaaagctat
    10141 aactgttaaa cacaatacag tgaaaagttt tagactgaag gctcactttg cagagggaag
    10201 cgtatgcgcg cgatcggtaa attgcctaaa ggcgtgttga tactggaatt tatcggaatg
    10261 atgctactgg cggtggcgct gctgtcggta agcgactccc tgtcgctgcc tgagccattt
    10321 tctcggccag aagtgcagat tctgatgatt tttctcggtg ttttgctcat gcttcccgct
    10381 gcggtggtgg ttattcttca ggtggcaaaa cgtcttgccc cacagctgat gaaccgtcca
    10441 ccgcaatatt cacgttcaga aagagaaaaa gataatgacg ccaaccattg aacttatttg
    10501 tggccatcgc tccattcgcc atttcactga tgaacccatt tccgaagcgc agtgtgaggc
    10561 gattattaac agcgcccgtg cgacgtccag ttccagtttt ttgcagtgta gtagcattat
    10621 tcgcattacc gacaaagcat tacgtgaaga actggtgacg ctgaccggcg ggcaaaaaca
    10681 cgtagcgcaa gcggcggagt tctgggtgtt ctgtgccgac tttaaccgcc atttacagat
    10741 ctgtccggat gctcagctcg gcctggcgga acaactgttg ctcggtgtcg ttgatacggc
    10801 aatgatggcg cagaatgcat taaccgcagc ggaatcgctg ggattgggcg gggtatatat
    10861 cggcggcctg cgcaataata ttgaagcggt gacgaaactg ctgaaattac cgcagcatgt
    10921 tctgccgctg tttgggctgt gccttggctg gcctgcggat aatccggatc tcaagccgcg
    10981 tttaccggcc tccattttgg tgcatgaaaa cagctatcaa ccgctggata aagacgcact
    11041 ggcgcagtat gacgaatatt acctcacccg tggcagcaat aatcgccggg atacctggag
    11101 cgatcatatc cgccgaacaa tcattaaaga aagccgccca tttattctgg attatttgca
    11161 caaacagggt tgggcgacgc gctaaaaccg ccacgtcgat gtatgatacg cgggcttttg
    11221 accaggtctg acagagaggt gcagggtgaa aattgccata ttgtcccggg atggaacgct
    11281 ctattcgtgt aagcggctgc gtgaagccgc tatacagcgc ggtcacctgg ttgaaattct
    11341 tgatccgctt tcttgctaca tgaacataaa tcctgcggcg tcttctattc actacaaagg
    11401 ccgcaagtta ccccattttg acgcagtgat cccgcgtatt ggcaccgcca ttacctttta
    11461 tgggacggcg gcactgcgcc agttcgagat gctggggagc tatccgctca atgagtcggt
    11521 cgccattgcc cgggcgcgtg acaaattgcg ttccatgcaa ctgctggcgc gtcagggcat
    11581 cgacctgcct gtcacgggca ttgcgcattc gccggatgat accagcgatt taatcgacat
    11641 ggtcggtggt gcgccgctgg tggtcaagtt ggttgaaggc acgcagggaa ttggcgtcgt
    11701 gctggcggag acgcgtcagg cggcggaaag cgtgattgac gctttccgcg gtctgaacgc
    11761 gcatattctg gtgcaggaat atatcaaaga ggcgcaaggg tgcgatatcc gctgtctggt
    11821 tgttggcgat gaagtggtcg ctgcgattga acggcgggcg aaagagggcg attttcgttc
    11881 caatttgcat cgtggcggcg cggcaagcgt cgccagtatc acaccacagg agcgtgaaat
    11941 cgcgataaaa gccgcgcgaa cgatggcgct ggacgttgct ggtgtggata ttctgcgtgc
    12001 taatcgcggg ccgttggtga tggaagtgaa tgcgtcgccg gggctggaag gaatagaaaa
    12061 aaccactggt atcgacatcg cgggtaaaat gatccgctgg atcgaacgct acgctacgac
    12121 agaatattgc ctgaaaacgg gtggttagtc gcaatcacat tactgatcat ggttttgcct
    12181 gcgctttttg cgtaagctgt gccggtcttt ttatcgaaag aggttgtaca aaattatgac
    12241 atcgctggtc gttcctggtc tggatacgct gcgtcaatgg ctcgatgacc tggggatgag
    12301 tttttttgaa tgtgataact gtcaggctct gcatctgccc catatgcaga atttcgacgg
    12361 tgtctttgat gccaaaatcg atctgatcga taacacgatc ctgttttctg ccatggcgga
    12421 agtccgacct tcagccgtat tgccgctggc ggcggattta tctgccatca atgccagttc
    12481 gctgaccgtg aaagcatttc ttgatatgca ggatgataat ctgccaaagc tggtggtttg
    12541 ccagtcttta tccgttatgc agggcgtaac ctacgagcag tttgcatggt ttgtgcgtca
    12601 gagcgaagag cagatttcga tggtcattct tgaagctaat gcccatcaac tgctgttacc
    12661 gactgacgat gaagggcaaa acaacgttac cgaaaactat ttcctccact gataactcct
    12721 ttcgagcacg cagtcgctgg tgcagtgact gcgcactgca aaattatctg ctgtttttaa
    12781 ccttttctta aagattattt cacttctctt gtgccgattt ggctttatca catagagcaa
    12841 atacgcataa caatttgtta aataccgttt tttaatccga gctatagtct caaaccctgg
    12901 ctaaagttat tcttgcgatg cttttatata gcgagcagtg ctggccggga gagagttctc
    12961 ttttcttaca ccgcgccgat aaaaaatatg cacgtttatt gcatatcttt tagtatgaca
    13021 acttttgttc gtttgttaac gaactttcag aaggaaagag atatgaccgc cttaaataaa
    13081 aaatggcttt cgggtctggt tgcgggtgct ctgatggccg tctctgtcgg cacgctcgcg
    13141 gctgaacaaa aaacactcca catttataac tggtctgatt atatcgcccc tgacacggtg
    13201 gccaattttg aaaaagaaac cggtattaaa gtcgtctacg atgttttcga ctctaacgaa
    13261 gtactggaag gcaaattaat ggcgggtagc accggctttg acttggtggt tccatctgcc
    13321 agctttcttg aacgccagtt gactgcggga gttttccagc cgctggacaa aagcaaattg
    13381 ccggagtgga agaatctcga cccggagctg ctgaagctgg tcgccaaaca cgatcccgac
    13441 aataaatttg ctatgcccta tatgtgggcg acgaccggga ttggctataa cgttgataaa
    13501 gttaaagctg tgctgggcga aaacgcgccc gtcgatagct gggacttgat cctcaaacct
    13561 gaaaatctgg aaaaactgaa aagctgcggt gtctctttcc tggatgcgcc agaagaagtt
    13621 tttgctaccg tgttgaatta tctcggcaaa gatcccaaca gcactaaagc ggatgattac
    13681 accggaccgg caaccgatct gctgttaaag ctgcgcccga acattcgtta tttccattca
    13741 tctcaataca ttaacgacct ggcaaacggc gatatttgcg tcgctatcgg ctgggcaggt
    13801 gatgtctggc aggcgtcaaa ccgcgcgaag gaagcgaaga atggagtgaa tgtctcgttc
    13861 tcgattccaa aagaaggggc gatggcgttc tttgatgtat tcgccatgcc tgcggatgcc
    13921 aaaaacaaag acgaagccta tcagttcctg aattacctgc tgcgcccgga tgtagtagcg
    13981 catatttccg accatgtgtt ctatgccaac gccaataaag cagccacgcc gctggtgagt
    14041 gcggaagtcc gtgagaaccc gggtatttat cctccggcgg acgttcgtgc gaagctattc
    14101 actctgaaag tacaggatcc gaaaatcgac cgtgtgcgca cccgcgcgtg gaccaaagtg
    14161 aagagcggaa aataatccgc agccttagat gccgggcggg cgcaccacac ccgccggcaa
    14221 ttcgcaccat catggtgcgc ttgcacacat tcaatgccgg agagcagccg tgaatgacgc
    14281 tatccctcgc ccgcaggcga aaacccgtaa ggcgctgacg ccgctattag aaatccgcaa
    14341 cctcaccaaa tcctacgatg gtcagcatgc ggtcgatgat gtcagcctga ccatctacaa
    14401 aggtgaaatc ttcgcgctgc tgggcgcttc cggctgtggc aagtccacgc tgctgcgtat
    14461 gctggcaggt tttgaacaac cttctgccgg gcagataatg ctcgatggcg tcgatttgtc
    14521 acaagtgccg ccttacctgc gccccatcaa tatgatgttt cagtcttacg cgctgtttcc
    14581 gcatatgacc gtggaacaga acatcgcttt tggcctgaaa caggacaaac taccgaaagc
    14641 ggaaattgcc agtcgggtcc atgagatgct cggcctggtg cacatgcagg agttcgccaa
    14701 acgcaaaccg catcagcttt ccggtggtca gcgacagcgt gtggcgctgg cccgaagcct
    14761 tgccaagcgc ccgaaactat tactgctcga cgagccgatg ggcgcgctgg ataaaaagct
    14821 gcgtgaccgg atgcagcttg aagtggtgga tattctggag cgtgtcggcg tgacctgtgt
    14881 gatggtcact cacgatcagg aagaggcgat gacgatggcg ggacgtatcg ccattatgaa
    14941 tcgcgggaaa tttgtccaga ttggcgagcc agaagagatc tacgaacatc caaccacccg
    15001 ctacagtgct gaatttatcg gttcggttaa tgtctttgaa ggtgtactca aagagcgtca
    15061 tgaggatggg cttgtgcttt attcgcctgg gctggtgcat ccactgaaag tcgacgcgga
    15121 tgcctcggtg gtcgataacg tgccggtaca tgtggcgctg cgcccggaaa aaatcatgct
    15181 ttgcgaagag ccgcccgcca atggttgtaa cttcgcggtg ggggaggtga tacacattgc
    15241 ctatctcggc gatctttcgg tgtatcacgt tcgtctgaaa agtgggcaga tgattagcgc
    15301 ccagctacaa aacgcccatc gtcatcgtaa agggttaccg acctggggcg acgaagtgcg
    15361 tttgtgctgg gaagtggaca gctgtgtggt gctgacggtt taaggagcaa agatgaatac
    15421 acttgaacct gctgcccagt cgaaaccgcc gggcggattt aagctgtggt tgtcgcagct
    15481 gcaaatgaag catgggcgca aactggtcat tgcgttgcca tatatctggt tgatcttgct
    15541 gtttctgctg ccatttctga ttgtctttaa aataagcctg gcggagatgg cgcgcgctat
    15601 tccaccttat accgaactga tggagtgggc tgacgggcaa ctgtccatca ctcttaatct
    15661 cggtaatttt ctgcaactga ccgacgatcc gctatatttc gatgcttatc tccagtcgct
    15721 acaggtggct gcgatttcga cattttgctg tttactgatc ggctatccgc tggcgtgggc
    15781 ggtggcgcac agtaagcctt cgacccgtaa tattttatta ctactggtga tcctgccgtc
    15841 gtggacctcg tttctgatcc gcgtttatgc ctggatggga atattaaaaa acaacggtgt
    15901 actgaataat tttctgctgt ggctgggggt tatcgatcaa ccgctgacca ttcttcatac
    15961 caatctggca gtttatattg gcattgttta cgcctacgtg ccgtttatgg tgctgccgat
    16021 ttataccgcg ttgattcgta ttgattattc gctagtggaa gcagcgctgg atctcggtgc
    16081 acgaccgctg aaaacgttct ttactgtgat cgtgccgctg actaaaggtg ggattattgc
    16141 cggatcgatg ctggtgttta tcccggctgt gggcgagttt gtgatcccgg aactgctcgg
    16201 tggcccggac agcatcatga tcgggcgcgt gctatggcaa gagtttttca ataaccgcga
    16261 ctggccggtg gccgcggcgg tagcgatcat catgttgctg ctgctaattg tgccgataat
    16321 gtggttccac aaacaccagc aaaaaagcgt gggagaacac ggatgaataa tttaccggta
    16381 gttcgttcgc cctggcggat tgtgattttg ctgctgggct ttacctttct ctacgcgcca
    16441 atgctgatgc tggttatcta ttcgtttaac agctcgaagc tggtgacggt gtgggccggc
    16501 tggtcaacgc gctggtatgg tgagttattg cgcgatgacg cgatgatgag tgcggttggt
    16561 ttaagcctga caattgctgc ctgtgcggca acggcggcgg cgatcctcgg gactattgcg
    16621 gcggtggtgc tggtgcgctt tggcaggttt cgcggatcaa atggctttgc ctttatgatc
    16681 accgcgccgc tggtaatgcc agatgtcatc acgggcttgt cgctgttgtt attattcgtc
    16741 gcgcttgctc atgccattgg ctggcctgcg gaccgcggta tgcttaccat ctggctggcg
    16801 catgtcactt tctgtacggc ttatgtggcg gtcgttattt cgtcgcgtct gcgggaactg
    16861 gatcgctcga tagaagaagc agcgatggat ctcggtgcga cgccgctgaa agtgtttttc
    16921 gtcattacgc taccgatgat catgcctgcg atcatttctg gctggttact ggcttttact
    16981 ttgtcgcttg atgatctggt gatcgccagc tttgtttccg ggccgggagc caccacgtta
    17041 ccgatgctgg tcttttccag cgtgcggatg ggggtgaatc cggaaatcaa cgcccttgca
    17101 acgttaattc tcggtgcggt cggaattgtc ggatttatcg cctggtatct gatggctcgc
    17161 gcagaaaaac agcggatacg cgatatccag cgtgcaagac atggctgaag acactaaaat
    17221 ttgccaacct ggctacataa tgccgcgcat gccgcggcat tgttttcatg gaagacgaaa
    17281 cgttgggatt ttttaagaaa acatcttcat ctcatgctcg cctgaatgtg cctgcgctgg
    17341 tgcaggtagc ggcgctcgcc attattatga tccgtggcct cgacgtgctg atgattttca
    17401 atacgctggg cgtgcgcggt attggcgagt tcattcatcg cagcgtacaa acctggagct
    17461 taacgctggt atttttaagc agtctggtgc tggtttttat cgagatctgg tgtgcgtttt
    17521 cactggtgaa agggcgtcgc tgggcgcgct ggctatatct gctgacacaa atcaccgccg
    17581 caagttactt gtgggcggct tcgctggggt atggttatcc ggagctgttc agcattcccg
    17641 gtgaatcaaa acgtgaaatc ttccatagcc tgatgctgca gaagctgccg gatatgctca
    17701 tcctgatgct gctgttcgtt ccctcgacca gtcggcggtt cttccagttg caataatgtg
    17761 tataatcgtc gcccctgatg atgtgaaggt caatgtatgc agtgcgcact ttacgacgcg
    17821 ggtcgctgtc gttcctgtca gtggataacg cagctgattc cagagcaact ctccgctaaa
    17881 accgccgatc ttaaaaatct gctcgccgat tttccggttg aggaatggtg cgcgccggtg
    17941 tcaggcccgg aacaagggtt tcgtaataaa gccaaaatgg tggtgagtgg tagcgttgaa
    18001 aaaccactgc tcggtatgct gcatcgcgat ggcacgccgg aagacctttg tgactgcccg
    18061 ctttatcctg cctcttttgc gcccgttttt gcggcgctaa aaccgtttat cgcctgtgcg
    18121 gggttaacgc cctacaacgt ggcgcgtaag cgtggcgaac tgaaatacat tctgctgact
    18181 gaaagccaga gcgatggcgg catgatgctg cgctttgtac tgcgttctga aaccaaactg
    18241 gcacaactgc gtaaggcgct gccgtggtta caggaacaac taccgcaact gaaagttatt
    18301 accgtcaata ttcagccggt acatatggcg attatggaag gggagacgga gatctacctg
    18361 actgaacaac aggcgctggc agagcgtttt aatgacgtac cgctgtggat ccgtccgcaa
    18421 agtttcttcc agactaatcc ggcggtcgcc agccagctgt acgctaccgc gcgcgactgg
    18481 gtacggcagc tgccagttaa acatatgtgg gatctgttct gcggtgtggg gggctttggt
    18541 ttacactgcg cgacgcctga catgcagtta accgggatcg aaattgcgcc agaggccatt
    18601 gcctgtgcaa agcagtcagc cgctgaactg ggcttaactc gtttacaatt tcaggcgctg
    18661 gactccactc agtttgccac tgctcagggg gaggtgcagg agctggtgct ggttaacccg
    18721 ccgcgccgcg gcattggtaa accgctgtgt gattatctct caacgatggc accgcgtttt
    18781 atcatctact ccagctgtaa cgcccaaact atggcgaaag atatccgcga actgcctggg
    18841 tttcgcatcg aacgggtaca gctttttgat atgttcccgc acaccgcgca ctatgaagtg
    18901 ctgacgctgc tggtgaagca ataaaaaagc cgcaggtgcg gcttcagatt gctgatcagg
    18961 tgcgctttgt tcatgccgga tgcggcgtgt acgccttatc cggcctacaa aatcatgcta
    19021 aatcaataca ttgcagagtt gatgtgggcc agataagcgc agcgcatcag gcaatcttac
    19081 ttttgtcatc agtctcaatt actgcgggaa ccactggtca ttgattttct gatatgtacc
    19141 gtcagcttta attgctgcca gcgcgttatt cagtttttcc agcagagctt tgttatccgg
    19201 acgtacagcg atgcccagac cggtgccgaa gtattgcgga tcggtcactt tttcagtagc
    19261 aacgcccagt tgcggattgg ttttcagcca ttcgtttacc accgctgtgt caccaaatac
    19321 cccatcaata cgaccatttt tcagatcgat aaaggcattc tgataactgt cataggagac
    19381 agttttcact tcggggtgct gatcctgaat atatttctgg tgcgtggtgc cgttttccat
    19441 cccaatacgt ttgcctttca gatcggcaaa cgctttgtag gtatcttttt tggcaatcac
    19501 gacggctgag ttttcatagt agggcgtggt aaacgatacc tgcttgctac gctcgggcgt
    19561 gatatccata ccggagatta cggcgtcata ttttctgaat ttcagtgacg ggatcaggct
    19621 gtcgaacgcg tgattagtaa aagtacattc tgcctgcatt tgtttgcaca aggcttttgc
    19681 cagatcgata tcaaagccga caatctcatt attagcacct atagattcaa agggtggata
    19741 ggtggctgaa acgccaaaat tgattttctc tgcggcagaa gcaccgaaag taaaggaagc
    19801 aagtaaagcg gcaagaacta actttttcat gatggaactc ccgtctgtca atcttatgat
    19861 ttttggccgt gtctgcggca tgggataaca atgccaccaa gtgaatttat atgcaataaa
    19921 tatgattaaa taatttaaat gaaataaaaa aagacggata acttagtgag ttgtccgtct
    19981 tcattataag aatttatgca ctatgtaggc cggataaggc gtccacgccg catccggcac
    20041 aggcaccgtg ctgatgtctg atgcgacgct ggcgcgtctt atcagaccta caaacccccc
    20101 ggcgaatgta cgcagctaca ttaattccgc cgttcgaatg ccagtgcttt gcgctcgatc
    20161 agacgcatca tcagcgtcag caggccgttg acgaccaggt aaataatccc tgccgcaccg
    20221 aacaccatta catcgtaggt gcgtccgtac aacaactggc tgtatcccat cacttccatc
    20281 agcgtaatgg tgtaagccag agaggtactt ttgaacacca gcaccacttc gttggaataa
    20341 gaagagagcg agcgtttaaa ggcatacggc agcaggatcg ccagcgtatc ttttttgctc
    20401 attcccaggg cgctacagga ctgccactga ccttctggga tcgcacgaat tgcaccgtaa
    20461 aacagctgcg tggtatacgc cgcactgttc agcgataacg caatcagcgc acataaccac
    20521 ggttctgaca acaaatgcca cagtgccgga tactcctgca aagtcggaaa ctggcccggc
    20581 ccgtaataaa tcaggaagat ctgcaccagc agcggcgtac cggtaaacag cgtgatataa
    20641 ccccgcacca gccacaccag caccggcgtt ttcagcgtca ggatgatggt aaaaatcaat
    20701 gccagaatca gtgccacaat cagcgaggca acggttagcg tcaggctggt gtgtagccct
    20761 ttcatcagtt cgggtaaata ctcaaacatt agctgggcct ccgctcaaaa cgtgtcgcgc
    20821 gcaggtcaat gcgtttgaga atgtactgac tgagcagggt gatcaccagg taaatcgccg
    20881 ccgccacaat gtaccaggta aatggttcct gggtacgagt agcgatgctt tttgtttgca
    20941 gcattaaatc attcacacta atcaaactga ccagcgcggt atctttcagc agcaccagcc
    21001 actggttacc gaggccaggc agcgcatgac gccacatctg cggcatcacc agacggaaaa
    21061 agatagccga tttcgacagc cccagcgcct gaccagactc ccactgaccc accggcaccg
    21121 ctttcaacgc gccccgaagc gtttgcgagg cataggcggc atacagcagt gacagagcga
    21181 tgacaccaca aaggaacggg ctaacgtcga agttctcaat gtccatctgc actgggatct
    21241 gcacgaaccc aagattgata gtgaagccat ccgaaagcgt cagcagcagc tgcgaggagc
    21301 caaaatagat aaacagcacc accagaattt ctggcaggcc acgcagaatg gttaccagcg
    21361 ctgaacctgc ccacgcgaca ggacgccatt tttccgactc ccataccgca aagaacatcg
    21421 ccagcgccag cccgacaatc aatgcacaaa cggcaaggcc gacggtcatc ccggcggcgc
    21481 ttgctaaagg aaaaaattca ttcatcagga attacttctg gaaccatttg ttgtagatgg
    21541 tttcgtaagt gccatctttc ttcacttttt ccagcgcagt gttgagtttc tgctgcagct
    21601 cagtgttgcc ctgacgtacc gcgatgccga ggccagtgcc gaagtaatct ttatcggtca
    21661 ctttgtcgcc caccgccgcc agtttcgggt tatctttcag ccactcagtg accactgcgg
    21721 tgtcaccgaa gacgccgtcg atacgcccgt tttgcagatc cagttttgcg ttctggtagc
    21781 tgtcatacgg aacggtagtg atttccgggt gcttatccat aatgaatttc tggtgtgtcg
    21841 tcccgttctg tacgccgact tttttgcctt tcagctgatc aacactggtg tatttgcctt
    21901 gctgacccac aaacagggca gagttgtcat agtacggggt ggtaaacagc acctgctttt
    21961 cacgctccgg agtgatatcc atgcccgcca tcacggcttc tacgcgacgg aatttcaggc
    22021 ttgggatcag gctgtcaaac gcctggttag agaaagtgca ggttgcatca atctctttac
    22081 acagcgcttg tgccaggtcg acgtcaaaac caacgatctg gttgtttgca tcaatcgatt
    22141 caaacggagg ataggatgct tcggtagcaa aacgaatggt ttcggcagct gtggcggaaa
    22201 gactaaaacc tgcaattaac gcggcaatca gaactttttt cattgttgtt atcccgaatc
    22261 ttagtgagag agatagtttt taaatgcttc ggtttgcggc tcggtaaagc agctcgcgtc
    22321 gccttgttct acgatatgac cattttccat atacaccact cggctggcgg ttttacgcgc
    22381 cacttcaact tcgtgggtga cgatcacctg ggtaatattc gtttctgcca gctcacgaat
    22441 gatgctgacg atttgtgccg taatttccgg gtccagtgcg gcggtcggtt catcgaacag
    22501 cagtacctgc ggttccatca tcaacgcacg ggcaatagca acacgctgct gctgaccacc
    22561 agaaagatgc agcgggtaac gatcgctata aggtttgaga cgcagacgtt ccagcagttt
    22621 ttctgcacgg gccagcgcct gatctttact caaccccagt acacggcagg gcgcttcaat
    22681 caggttttgc tgcacggtca gatgcggcca caggttgtat tgctgaaaca ccatgccaac
    22741 gttacgacgc aaatcgcgaa tcgctttgtc agagggtgtt ttggtgaaat cgaaatggtt
    22801 gcctgcaatg ttgagcgtac cggagcgcgg catctcaagc agattgagta cacgcagcag
    22861 cgagctttta cccgcgccgc tggggccaag taacaccagc gtttcgccct gtgggcaatc
    22921 cagcgtgata tcgaacagcg cctgatgcgc gccgtagaag caattaatgc cgtttaattg
    22981 aatactcatt gacactcgta tactggcagt ctgatagcta ttgaggtcga agatagtacc
    23041 tttgacagaa taattatgca atatttctgc tttaaaagtt aaaagcaaag cgcattattc
    23101 aataaacata gcacaaaata acgggggcgg tggtcggcga gcataaatgt cggcattcct
    23161 cacgaaatgc cggacaattt acggggttta ttggttgatc aaggtgttag cgattctcga
    23221 tggactgacg gagcgtaccc gccgtggcat gaacgctgcc gcctaagtag cgtacatcgt
    23281 cgatcaccca acactggcct tcctgaatca ttaacacttc atcctgccag ctctgatcac
    23341 cctgttttag atccacacgc agaggaatat ttcgcgcatc acgattcggg attgttgagg
    23401 cactggcaac acgggcgctc tctggcaagg ttgtgcgact ggagaatgga tcgttggtca
    23461 gtagttcccg atggttatta tcccgggagg catcgctaag cagtgtcgcc agtttgtcgc
    23521 tcagataagg gcgcaaggcg gtgatgtcgt tgctgcggtg caaaatgcgg tagtcataaa
    23581 attgctgggc cacgttaccc gggcctcctt caacgcaagg accactgcgt gtgccgttat
    23641 ctttataagc tggagtgact gtggtgcagg cactgaggag cagtgcgcag gggataagca
    23701 ttgtcaattt gctgtagcgc ataatgattt ccttataagc gatcgctctg aaagcgttct
    23761 acgataataa tgatatcctt tcaataatag cgtatcagtc tgataatgct tttgagatcg
    23821 aaggcttagc aaacaaggag atcgatcatg caattttcta caaccccaac tctggaaggc
    23881 cagaccatcg ttgaatattg cggtgtggtg accggcgaag cgattttagg tgccaatatt
    23941 ttccgtgatt tctttgccgg tatccgcgat atcgttggcg gacgttccgg tgcgtatgaa
    24001 aaagaactgc gtaaagcacg ggagatcgcc tttgaggaat taggctccca ggcgcgggcg
    24061 ctgggggtcg atgccgtcgt cggtattgat atcgactacg aaacggtcgg gcaaaacggc
    24121 agtatgctga tggttagcgt cagcggtacg gcggtgaaaa cgcgtcgatg agaagagtct
    24181 tctggctggt cgctgccgct ctgttattgg cagggtgtgc aggcgaaaaa ggcattgtcg
    24241 agaaagaggg atatcagctt gatacccgac gccaggcgca ggcggcgtat ccgcgcatta
    24301 aagtgctggt gatccactac accgcagatg attttgatag ctcgctggcg acactgaccg
    24361 ataagcaggt cagctcgcat tatctggtcc ctgcggtacc accgcgatac aacggtaaac
    24421 cgcgcatctg gcaactggtg ccggaacaag aactggcctg gcatgcgggg attagcgcct
    24481 ggcgcggggc aacgcgcctt aacgacacct ctattggcat tgagctggaa aaccgtggct
    24541 ggcaaaaatc ggccggagtg aaatattttg ccccgtttga accggcacag attcaggcgc
    24601 ttattccact ggcgaaagat attattgccc gttatcacat caagccggaa aacgtagtgg
    24661 cacatgcgga tatcgcaccg cagcgcaaag acgatccggg gccattattt ccctggcagc
    24721 aactggcgca gcaggggatt ggtgcctggc cggatgcgca gcgggttaac ttttaccttg
    24781 ccgggcgcgc gccgcacaca ccggtagata ccgcgtcatt gctggagctt ttggcgcgct
    24841 acggttatga cgttaaacct gatatgacac cgcgcgagca gcggcgcgtg attatggcat
    24901 tccagatgca tttccgcccg acgttatata acggcgaagc ggatgcagaa actcaggcga
    24961 ttgccgaagc attgctggag aaatacgggc aggattagcg cggcagtttt ccgtggtcgc
    25021 gtagccaggc ggcagttttc tcgatacctt catccagggt gatgaccggc tgataaccta
    25081 actcttcctg cgcacgcgta atatccagcg taaagtcaaa attcaacttg gagacgccgt
    25141 agtgggtcag cggcggctct tttgctgact tgcggcctaa acgctccatg ctgcgggcga
    25201 tcatatccag catcgggtag gggacggaac gaatacgaca gtcaatattc aactcgtcga
    25261 tcagcttctg cacgatgctg cacagtgtgc gatgctcgcc gttggtgatg ttgtacacac
    25321 gcccggaagg tagcttatcg caggcttcct ggcttgccag ccacattgcg tgcacggcat
    25381 tttcatagta ggtcatatcg accagcgcac tgccgccatg cggtaacaga atactgccgt
    25441 agtggtgcat catatgcgcc agacggggaa taaagacttt atcgtgcggt ccgaacagac
    25501 tttgtgggcg cagaatagta aagcgcgttt gtggattcgc ctgcgaaaac atattgatca
    25561 cttcttcgct ggctgctttg ctgcgggcaa actcgttggc gaagcggtga gggcgaaaat
    25621 cttctttaat atcgcgatgg tggtgataat cgaagtacag ggagggggaa gagatatgaa
    25681 taaagttacg cacaccccag gcgacagccc attcacccag gcggcgagtg gcgcgaacgt
    25741 tagccagatc gaaagcctgt tgtgtccccc agggtgaggt aaagctggag cagtgccaca
    25801 gcgtatcaat gcccgcgagc atcactttag cttgtgatga aaccagctcg gtcagatccg
    25861 ccggaacaaa ctctgcgccc attttttcca gcaatttgcc cattgcctcg ttgcgaccgg
    25921 tcgctcgcac gctgatgcct ttctggcata aaaactctac cgcgtttcga cctaagccgc
    25981 tggtggcgcc ggtaaccagt accttcatat caatccactg ttgttgagaa aataacgtgc
    26041 gcattcttcc gtgatttccc ccatgatgca atgggaaaca tgaaagaata acgcaggttt
    26101 tgtcgattaa tctgtgcttt gttctgccag tctggcgatt tgttttgcca ttccgcgaaa
    26161 aataaacaga tgcgcgggga tcatcaataa ccagtaaaac agccccggca taccgtgcgg
    26221 atgccagaaa gcgcggacat cgatagtacg atagtcgcct ttatcttcca ggctaaaaca
    26281 cagtcgtccc agccccggcg ctttcatgcc aaataacaac gtaagttgtt tttccggttc
    26341 aacgacaatc actttccagc tatctaccgc atcgccagtc tgtaaatatt cgcgctccgg
    26401 gcggcctttc gccagcttat gaccgatcgc gcggtccatc aacgcccgtg tctgccacaa
    26461 aatattgcca aagaaataac gctctttacc gccgatttgg ttcactacct gccataaagc
    26521 agcaaggctg gcggacgttt taacggtaaa ccccgcctgt ttggcaaaat aaccgtactc
    26581 cggtcgccag cgggcaaagg cctgagcgtc gtagccccag tcgctggagt tgaccagttt
    26641 ttcctcctct ttcaacgtgc tacgtaccgc gtcatcgaaa gcgatcagcc gttgtgggat
    26701 gagtgcacgt agcgcggtat catccgccag cagatcgtgt ttcagcccct gaatcaacgc
    26761 cctggcggtg gtgggcggta cggaagtaat cacattgaga aaccacaccg aaatccagcg
    26821 ggtggggagg gggatgggga tcaaccagcg gcgcttaccg ctcaccgcca taaaatgttc
    26881 aaactgttgc tgataactga gcacctctgg tccggcggct tcgaagatgc ggtgttcgct
    26941 ggccggatga tctaacaacg ccaccagata gtgcagcaag ttttccagcg cgatgggcgt
    27001 ggtgcgtgaa cgtacccagc gtggcggcgt taacactggc aggttgtaga ccatatcgcg
    27061 catgacttcg aacgccgctg aacctgcgcc aacgataatt ccggcccgaa gttcggtcac
    27121 aggtacattc gcttcacgaa gaatgtccgc cgtagcctga cgagcacgca gatgatccga
    27181 ctgctcatgt ggcggggcct gcaacgaact gagaaagatt aattgcttaa ctggtacttc
    27241 acgtagcgca tcgcggacgt tgagagccac ctggcgctcc tgagcgataa aatcgccgcc
    27301 ttcgcccatg ctgtgcacca gaaaatagac ggtatcgata tcctgcaaca gggccggaag
    27361 gttatccggc cagctgagat cgactttatg gcaactgacg tttgccagtt gcagctttgc
    27421 aagcctgtcg acatgacgtg ccgccgccag gatctgatgc ccttgctggc tgagtgtgcg
    27481 caccagatgc tgaccaatgt agccactggc accgagaact aaaatgcgtt gcggcacgtc
    27541 tctctcctta acgcgccagg aatgcgcgcc agtgggcggc gacttccgcc agttgttcgc
    27601 gcgagacgtc aagatgcgtc accaggcgga caatcggcga ggcgttaatc agcacgtttc
    27661 tcactttcat gtattcgcct aacgcggcag cattttcttc cccgacgcga acaaacagca
    27721 tattagtgtc ctgacgcatc acatccgcgc ctgcttcacg cagttgctcc gccatccagg
    27781 cggcgttgtc gtgatcttcc tgcaaccgtg cgacgttatt tttcagggca tacatcccgg
    27841 cggcagccag aatcccggac tgacgcatcc cgccaccggc cattttccgc cagcggatgg
    27901 cacgtttaat gtaatcacga ttaccgacga gtaatgaacc gactggcgtc ccaagacctt
    27961 tcgacaggca aatggtgaac gaatcacaat attgcgtgat ctctttcagt tcgcagccgt
    28021 aagccaccac ggcattaaag atgcgcgcac cgtcaacatg cagcgccaga ttgcgctcgc
    28081 gggtaaattc ccatgcttct ttcaggtatt cacgcggcag cactttgccg ttgtgggtgt
    28141 tttccagact gagtaatttg gtgcgggcga aatggatatc gtcgggtttg attttcatcg
    28201 ccactttatc cagcggtagc gtgccgtcgg cagccgcgtc gatggggtgc ggctgaatac
    28261 tgcccagcac cgctgcgcca ccggcttcaa acagatagtt atgcgcggcc tgaccgacaa
    28321 tatactcttc gccacgttcg cagtgactga gcagagcgac caggttggcc tgagtgccgg
    28381 taggcagaaa aatggcggct tctttaccgg aaagctctgc tgcatagtcc tgcagagcat
    28441 taacggtagg gtcgtctccg taaacgtcgt ccccaaccgg ggcggccatc atcgcttcga
    28501 gcatggcgcg gctcggtcgg gtaacggtat cactgcgtaa atcaatcatg gcatgtcctt
    28561 attatgacgg gaaatgccac cctttttacc ttagccagtt cgttttcgcc agttcgatca
    28621 cttcatcgcc gcgtccgctg atgattgcgc gcaacatata caagctaaat cctttggcct
    28681 gttcgagttt gatctgcggt ggaatggcta actcttcttt ggcgaccacc acatccacca
    28741 gcaccggacc gtcgatggag aaggcgcgtt gcagggcttc atcaacttca gacgcttttt
    28801 ctacacggat acccgtaatg ccgcacgctt cggcaatgcg ggcaaagttt gtgtcgtgta
    28861 gttcggtgcc gtcagtcaaa tagccaccag ctttcatctc catcgccaca aagcccagca
    28921 cgctgttgtt aaagatgaca attttcactg gcagtttcat ctgcactact gagaggaaat
    28981 cgcccatcaa catgctaaaa ccgccatcgc cgcacatggc gaccacctga cgttctggct
    29041 ctgtcgcctg cgcacccagc gcctgcggca tggcgttagc catcgaaccg tggttaaacg
    29101 aacctaacag gcgacgcttg ccgttcattt ttagataacg tgccgcccac accgttggcg
    29161 taccaacgtc acaggtgaaa atagcgtcat cggcggcaaa atgactaatt tgctgcgcca
    29221 gatattgcgg gtgaatggct ttctcgctcg gtttagctaa atcgtccagc cctttgcggg
    29281 cgtcgcggta atcttccagc gctttatcca gaaacttgcg atcggctttt tcttccacca
    29341 atggaagcaa tgcacgcaga gtcgacttga tatcgccgac cagtgccata tccaccttgc
    29401 tgtgagcgcc gatgctggct gggttgatat caatctgaat gattttggca tcggtcgggt
    29461 agaaggcgcg gtagggaaat tgcgtgccga gtagcactaa cgtgtcggcg ttcatcatgg
    29521 tatggaaacc tgacgagaag ccgattaacc cggtcattcc aacatcatac ggattatcgt
    29581 attcgacatg ttctttaccg cgcagggcat gaacaatagg cgctttaatt ttcccggcaa
    29641 actcaactaa ctctttatgc gcccccgcgc agccgctgcc acacatcagg gcgatattgc
    29701 tggaataacg cagcagttgc gccagtttgc gtaactcttc ttcttccggc gtcacgactg
    29761 gttgtggcgc atgataccag tgcgtggttg ccccttctgg cgcaggtttt aacgccacgt
    29821 cgcctggtaa cacgacaacc gaaacgccac ggttaagcac cgctttgcgc atggcaatcg
    29881 ccagtacttg tgggatctgc tccgggctgg aaaccagctc gcaatagtga ctacattcgc
    29941 ggaatagctc ttgtgggtgg gtttcctgga aatagccgct gccaatttcg ctggagggaa
    30001 tatgagcggc aatcgccagt accggaacgt gattgcggtg gcaatcaaac aggccgttga
    30061 ttaagtgcag gttgccgggg ccgcacgatc cggcgcagac cgccagttct ccgctaagtt
    30121 gtgcttcagc gccagcggca aaggccgcca cttcttcgtg gcgggtggac atccactcga
    30181 tggtgcccat gcgattaaga ctgtcactaa gaccattcag agagtcgcct gtgactcccc
    30241 agatgcgttt cacccctgcc gattcgagtg ttttggcgat ataagctgca accgtttgtt
    30301 tcatggttct ccatctcctg aatgtgataa cggtaacaag tttagttcat ctgacggagg
    30361 gggaagggat gggagagaaa ggaggcacta acggttaaat agcccgatga aaggaatatc
    30421 atcgggcata aggcgattat gcgagaacca aatccccctg cggatggcag gagcaggcca
    30481 gtacgtaacc ttcagcgatt tcggcgtcgg tcagcgtcat tgtactgctc accgtatatt
    30541 caccggaaac cacttttgtc ttacagcagc cgcaaacacc cgcacggcag gcagcgacaa
    30601 ccggaacgtt attgctttcc agcgcctcca gtagcgtggt gccaaccggg gcgtaaaatt
    30661 ctcgtgccgg ttgcagtttg gtgaatttca gaccgctggt cgccgcttct gctactgggg
    30721 tgaagaattt ctctttaaag aaacgcgtca cgccgagcgc tttcacttcc tgctctaccc
    30781 aatccatata cggagccggg ccgcaggtca tcacggtacg tgaagctaag tcaggtacac
    30841 ctgccagcag ttcgcgagtg agacgaccag cgataaagcc ttcggtaacg ttattttctg
    30901 ccactagcgt taccggatag ttacgccact catcggcgaa aataacatcc tgcggcgtac
    30961 gcacgttgta gatcacccgc acatcggcct gtggacggtt cttcgcaagc cagcgacgca
    31021 tcgacataat cggcgtgacg ccgcagcctg ccgccagcaa caggaattta tcttctgctt
    31081 tatcgtcgca ggtaaattcc cccatcgcgt ccgaaagcca gagataatca ccgcgtttta
    31141 catcgcgcgt cagccactgg gagccgacac cgtcatcaat ccgccgcacg gtcagggtga
    31201 tatattcact cacgcctggc gtggaggaaa tggtgtaagc acgcagcgtt tccgctgagt
    31261 ttcgcacgct gaccagtgca tattgcccgg cgcgatatgg gtagtaatcg tggcaaatca
    31321 gggaaatcgt ccacacatcc ggcgtttctt gcgtaatgtg atgaacctgc atccgccacg
    31381 ggcattgatt cgttggcatc gtcatcgaca aactccttac gcgctcaaca gttgcttcat
    31441 gtcttcttca acagtggtga tagaacgcag gccgaatttc tcgttcagca ccgccagcag
    31501 gtctggtgtc aggaaaccag gtgcagtcgg gccggtgacg atatttttca cgcccagaga
    31561 aagcagcgtc agcagaatga cgatcgcttt ctgttcaaac caggagagca ccagcgacag
    31621 cggcagatcg ttcacaccac agcccagttt ctctgccaga gtgacagcca gaataatcgc
    31681 tgagtaagca tcgttacatt gacctgcatc taccagacgg ggcagacctt cgatatcgcc
    31741 aaactcaagt ttgttaaagc gatatttacc acaggcgagg gtcaggatca ggcagtcatc
    31801 cggcacgatg gtggcgaaat cggtgaagta gtggcgctcg ccgcgtgcgc cgtcacagcc
    31861 accaagcagg aagatatgac gcagtttttc acggctcacc agatcaatca gcgtatcagc
    31921 agcgccaagc agcgtctggc gaccaaaacc cacggtgata aggtgcggaa tttcgctgta
    31981 cgggaagcct gccatctgtt gcgcttgggt gataaccgca gagaaatcat caccgtccag
    32041 atgacgcacg ccaggccagc caacaatgct gcgggtccag atacgatcgt cataagcgct
    32101 tacggttggg tcgatgatgc agttcgaggt catcacgatg gggccaggga aacgagcgaa
    32161 ctccacttgc tgattctgcc agccgctgcc gtagttaccg accagatgct tgaatttacg
    32221 cagctccggg tagccatgcg caggcagcat ttcgccgtgg gtgtagacat taacgcccgt
    32281 gccttcggtc tgttccagca ggttgtagag atctttgaga tcgtgaccgg aaatcagaat
    32341 gcatttaccc gccgtcgctt tgacgttgac ctgggttggc gtcgggtgac cgtatttacc
    32401 ggtttcgcct gcatccagaa tgctcatcac tttgaagttc atctggccga tttccattga
    32461 acactcaaga agcgcgttca tatcggcagg ccaggtcccc agccacgcca tgattttatg
    32521 gtactgggca taaatatcgt tgtcgtattg accgagaaca tgcgcgtgtt ccatataggc
    32581 cgccgcacct ttcaggccat acaggcacag cagacgcagg ccgagaatgt tttcgccaat
    32641 cgccgcttta tctttgttag gggtaaattc tgctgcctga cgttgcagct cgccgagatc
    32701 atcgctcacc agttgcaggt cagccatcgg gttatcgacg cgcgcgttgg catctacagc
    32761 caggcattgt gctttcagcg cctcgcgcaa ggcaatcgct tcacgagcgt agccgacaat
    32821 acgcggagaa tcgaagttaa cgttggtcag ggttgagaaa aaggcacgtg gcgcgaagct
    32881 gtcaacatcg tggttgatga tgccgtattc acgcgctttt accgcccagg cagaaagccc
    32941 ttgcagcgcc gcgatgagta aatcctgaag gtcagaagtt tccgccgttt taccacacat
    33001 cccctgcgcg tatgagcagc cgtttcctgc cggagtacgg atagtttgtt cacattgcac
    33061 acaaaacatg atcacacctt ttaaagttat atttaatata catgtttaag gttaagacgc
    33121 ttaacgcggg gataaaaggg atttttcatg caactttaag ggagattgat ttagcgcaat
    33181 tttggcggca gggatctacc gccagagagg tattacgcag agaaaaaggc gatgaggatc
    33241 ggcactaaca ggctaagaat aaaaccgtga acaattgccg ccgggaccat atccagcccg
    33301 ccagtacgtt gaagaacggg tagggtgaaa tccattgatg tggcaccgca taagcccagt
    33361 gcagtagagc agctgcggcg aatcagccca gggatcaaca taatagcaat cagttcacgg
    33421 gccagatcat taaaaaacgc cgcgctcccg attaccggac caaaagattc ggtcaataaa
    33481 ataccggaaa gagaatacca gccgaaaccg gaggccattg ccagcgcggt attgatgggg
    33541 agatcaagaa taaaggcgtt aattaaacca ccaattaatg aactgacaac caccaccacg
    33601 gcgacaatca ttccccggcg attaaggaca atctgcttta aggtcatgcc attattgcgc
    33661 aactgaatac caacgaggaa aagtagcaaa attaacgtgt attcactggc ttcggtcgcg
    33721 tgttgtaaga aagccagtcc actcagacca atggcaaaac caatcactac tacgccgcac
    33781 agttttagcg actccagcgc catcgcaata cgcgacggga gtttttcttg ctgatggtgg
    33841 ttgcgccacg gcaggcctcg ctccagccac atcagggcgg caatattaca cagtaaaata
    33901 acggtaatac tgacggcaga ataatgcaga atcgccaaca ggttactggc gaggttatcg
    33961 agaaacgcca gactgatacc cataaaaaag agaataaggt aaaccatcca gcttaatagc
    34021 tgattaataa cttttaacgc agcttgttgg cgaagcggaa tgaggtaacc cacaatcagg
    34081 ggaaccagaa tgattaacag cccagaaaac atgaaaaccc agtccttgca aagatgaagt
    34141 cgaaatgcgc gatgacacac tactgaaagc ggaaggacga gtaaagttgc aattaaaagg
    34201 aaatgttatg cataaggagc agtagagtat tcgttttcat ttaaagatat tcttgcgctt
    34261 taattataaa ctgcaccgat gttggtggcg tcaaaatcgc cgaggcgttc cctgaaggcc
    34321 ggggcagccc acatggatgt gggctgaggg cgcgttttac agggatgtta cctcgcgccc
    34381 gacccggtag ccgtaaggga taagtcgagg gcaccgcgca gcggcgattt tgttcgccag
    34441 agcccggggg ggcagggggc ggcggcgatt ggccgccccc tgcgcgctcc ttgcgccagt
    34501 ggcaatatgt ggcttagctc atgaaaggag cgcaacaaga tgatgaatca acatataaca
    34561 acatcttaaa aaaggcctga cattacgcca ggccttctgc gttaattaat cacgcttttc
    34621 cagcagggtc cggtaaatca gaccaccgat aatgccgccg acaattggca ccacccagaa
    34681 gaaccacagt tgttctaatg cccagccgcc ctggaagata gcaaccgcgg tgctgcgcgc
    34741 cgggttaaca gaagtgttag tcaccggaat actaattaag tgaatcaggg ttaaggccag
    34801 accaatagcg atcggcgcaa aacctgctgg cgcgaatttg gcggttgcgc cgtggatcac
    34861 caacaggaaa cctgcactca ataccagttc aactaccagc gcggaaagca tggaataacc
    34921 gcctggtgaa tgctcgccat aaccgttaga agcaaaaccg ctggctgccg cgtcaaaacc
    34981 cgttttacca ctggcaatta aatacagcag cgccgctgca acaataccgc cgacaacctg
    35041 ggcaattacg tagccaacga cttcttttgc cggaaaacgt ccgccagccc ataaaccaat
    35101 agtgaccgct gggttaaaat gaccaccaga aatatgacca acagcaaagg ccatcgtcag
    35161 aacggtcaga ccgaacgcca acgccacgcc ggcaaaacca atgcctaatt ccgggaagcc
    35221 tgcggccagt acagcactac cacagccacc aaaaacaagc cagaaagtac caaaacattc
    35281 agctgctaat tttctgaaca tatccacctc aattaaaaat tgaccctgtg aaaaatatgg
    35341 tcgttttata gggtcgtcgt aaaaaaatga cgacggaaat aatgcgcggc tattttaaaa
    35401 acgaaggcga gtcattcacc agataaataa atccagtaaa tttg
//
LOCUS       DAJVUN010000017        35322 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.017, whole genome shotgun sequence.
ACCESSION   DAJVUN010000017 DAJVUN010000000
VERSION     DAJVUN010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35322
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.017"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..182
                     /locus_tag="OQQ76_000666"
     CDS             <1..182
                     /locus_tag="OQQ76_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HCS1967261.1"
                     /translation="ARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHT
                     VNSSDMATLKIIGDD"
     gene            208..921
                     /gene="msyB"
                     /locus_tag="OQQ76_000667"
     CDS             208..921
                     /gene="msyB"
                     /locus_tag="OQQ76_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HCS1967262.1"
                     /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLM
                     RNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKL
                     KADKEMSTFEIEQQLLEQFLRKTWKKMDEEHKQEFLHAFDARVNELEELLPLLMKDKL
                     LAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVT
                     IPAVLQIACLRRMVSATQV"
     gene            1070..1636
                     /gene="satP"
                     /locus_tag="OQQ76_000668"
     CDS             1070..1636
                     /gene="satP"
                     /locus_tag="OQQ76_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HCS1967263.1"
                     /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF
                     YSGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY
                     LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC
                     GASAIYLAMGEVLNEQFGRTVLPIGESH"
     gene            complement(1671..2258)
                     /gene="mog"
                     /locus_tag="OQQ76_000669"
     CDS             complement(1671..2258)
                     /gene="mog"
                     /locus_tag="OQQ76_000669"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HCS1967264.1"
                     /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELET
                     RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ
                     MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAAGNVVVHGIFA
                     SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE"
     gene            complement(2373..3326)
                     /gene="tal"
                     /locus_tag="OQQ76_000670"
     CDS             complement(2373..3326)
                     /gene="tal"
                     /locus_tag="OQQ76_000670"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1967265.1"
                     /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
                     IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS
                     YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
                     FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY
                     ETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARI
                     TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL"
     gene            3605..5035
                     /locus_tag="OQQ76_000671"
     CDS             3605..5035
                     /locus_tag="OQQ76_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HCS1967266.1"
                     /translation="MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFG
                     KSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPRAVFWMWVAAFIG
                     MATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSG
                     VQANAVARALSFSFDFPPLVTGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLT
                     SMVICVINIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMG
                     STPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNDTTYMPLEGIQ
                     LIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNTPKAIWCLRIC
                     TFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVR
                     PVFDPLRYPDIGRQLSPDAWDDVSQE"
     gene            5105..5881
                     /gene="yaaA"
                     /locus_tag="OQQ76_000672"
     CDS             5105..5881
                     /gene="yaaA"
                     /locus_tag="OQQ76_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HCS1967267.1"
                     /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP
                     QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD
                     FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA
                     AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF
                     IIENRLTKPEQLTGFNSEGYFFDEASSSNGELVFKRYEQR"
     gene            complement(6034..6330)
                     /locus_tag="OQQ76_000673"
     CDS             complement(6034..6330)
                     /locus_tag="OQQ76_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS1967268.1"
                     /translation="MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGY
                     YWDGGHWRDHGWWKQHYEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR"
     gene            complement(6544..7830)
                     /gene="thrC"
                     /locus_tag="OQQ76_000674"
     CDS             complement(6544..7830)
                     /gene="thrC"
                     /locus_tag="OQQ76_000674"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HCS1967269.1"
                     /translation="MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID
                     EMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP
                     TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG
                     KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR
                     LLAQICYYFEAVAQLPQEARNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN
                     DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE
                     TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE
                     TLDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ"
     gene            complement(7831..8763)
                     /gene="thrB"
                     /locus_tag="OQQ76_000675"
     CDS             complement(7831..8763)
                     /gene="thrB"
                     /locus_tag="OQQ76_000675"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HCS1967270.1"
                     /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETF
                     SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS
                     VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI
                     ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
                     PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTA
                     QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN"
     gene            complement(8765..11227)
                     /gene="thrA"
                     /locus_tag="OQQ76_000676"
     CDS             complement(8765..11227)
                     /gene="thrA"
                     /locus_tag="OQQ76_000676"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HCS1967271.1"
                     /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT
                     NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK
                     HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY
                     LESTVDIAESTRRIAASRIPADHMVLMAGFTSGNEKGELVVLGRNGSDYSAAVLAACL
                     RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
                     QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR
                     VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV
                     TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
                     GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA
                     LLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
                     FLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLN
                     AGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK
                     LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG
                     KVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
                     NDVTAAGVFADLLRTLSWKLGV"
     misc_feature    complement(11253..11372)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00506"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Thr leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00506"
     gene            complement(11308..11373)
                     /gene="thrL"
                     /locus_tag="OQQ76_000677"
     CDS             complement(11308..11373)
                     /gene="thrL"
                     /locus_tag="OQQ76_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thr operon leader peptide"
                     /protein_id="HCS1967272.1"
                     /translation="MKRISTTITTTITITTGNGAG"
     gene            complement(11587..12273)
                     /locus_tag="OQQ76_000678"
     CDS             complement(11587..12273)
                     /locus_tag="OQQ76_000678"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1967273.1"
                     /translation="MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPAT
                     RWVAHGSGDIIDNIKVFPTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKS
                     SWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ
                     QPTKSDTTADQHQLQALRERVMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRL
                     LHDIEKNITK"
     gene            complement(12673..12813)
                     /locus_tag="OQQ76_000679"
     CDS             complement(12673..12813)
                     /locus_tag="OQQ76_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967274.1"
                     /translation="MTKVRNCVLDALSINVNNIISLVVGTFPQDPTVSKTAVILTILT
                     AT"
     gene            12909..13625
                     /gene="arcA"
                     /locus_tag="OQQ76_000680"
     CDS             12909..13625
                     /gene="arcA"
                     /locus_tag="OQQ76_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003621071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HCS1967275.1"
                     /translation="MQTPHILIVEDELVTRNALKSIFEAEGYDVFEATDGAEMHQILS
                     EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLISPDGEQYK
                     LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT
                     PEIIATIHGEGYRFCGDLED"
     gene            complement(13685..15037)
                     /gene="creD"
                     /locus_tag="OQQ76_000681"
     CDS             complement(13685..15037)
                     /gene="creD"
                     /locus_tag="OQQ76_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HCS1967276.1"
                     /translation="MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDA
                     IRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEE
                     RKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPE
                     VNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNS
                     EMTLTSNWPHPSFLGDFLPAKREVSESGFQAQWQSSWFANNLGERFASGNDTGWENFP
                     AFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLV
                     MFYLLLLALSEHIGFTVAWIIASLIGALMNGIYLQAVLKGWRNSMLFTLALLLLDGVM
                     WGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTMDDQLRIWK
                     "
     gene            complement(15095..16519)
                     /gene="creC"
                     /locus_tag="OQQ76_000682"
     CDS             complement(15095..16519)
                     /gene="creC"
                     /locus_tag="OQQ76_000682"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HCS1967277.1"
                     /translation="MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLID
                     TATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDSQG
                     KVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRL
                     IGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYAD
                     SVTDNKPVPLPELGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRG
                     AAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTVVDVAALF
                     RRVSEARTVQLAEKNITLHVMPTEVNVAAEPALLEQALGNLLDNAIDFTPESGRITLS
                     AEVDQEHVALKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN
                     GEVTLRNVQEGGVLASLRLHRHFT"
     gene            complement(16519..17208)
                     /gene="creB"
                     /locus_tag="OQQ76_000683"
     CDS             complement(16519..17208)
                     /gene="creB"
                     /locus_tag="OQQ76_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HCS1967278.1"
                     /translation="MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR
                     QLVPDVMILDVGLPDISGFELCSQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYV
                     AKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEF
                     LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLHAKLRAINPDLSPINT
                     HRGMGYSLRGL"
     gene            complement(17221..17694)
                     /gene="creA"
                     /locus_tag="OQQ76_000684"
     CDS             complement(17221..17694)
                     /gene="creA"
                     /locus_tag="OQQ76_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CreA"
                     /protein_id="HCS1967279.1"
                     /translation="MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEA
                     FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGE
                     VVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ"
     gene            17905..18774
                     /gene="robA"
                     /locus_tag="OQQ76_000685"
     CDS             17905..18774
                     /gene="robA"
                     /locus_tag="OQQ76_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     RobA"
                     /protein_id="HCS1967280.1"
                     /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD
                     VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL
                     YRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR
                     YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM
                     LQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP
                     INLRCELLIPIRR"
     gene            complement(18771..19418)
                     /gene="gpmB"
                     /locus_tag="OQQ76_000686"
     CDS             complement(18771..19418)
                     /gene="gpmB"
                     /locus_tag="OQQ76_000686"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase GpmB"
                     /protein_id="HCS1967281.1"
                     /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAK
                     ELGITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEEN
                     WRRQLVNGTVDGRIPEGESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVST
                     ILGLPAWAARRLRLRNCSISRVDYQESLWLASGWVVETAGDISHLDAPALDELQR"
     gene            19470..19991
                     /gene="yjjX"
                     /locus_tag="OQQ76_000687"
     CDS             19470..19991
                     /gene="yjjX"
                     /locus_tag="OQQ76_000687"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/xanthosine triphosphatase"
                     /protein_id="HCS1967282.1"
                     /translation="MHQVVCATTNPAKIQAILQAFHEIFGEESCHIASVAVESGVPEQ
                     PFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENTSQRGEARSA
                     TLPLPAVILQKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVIL
                     ALSPFHNAVYQAL"
     gene            complement(20076..20402)
                     /gene="trpR"
                     /locus_tag="OQQ76_000688"
     CDS             complement(20076..20402)
                     /gene="trpR"
                     /locus_tag="OQQ76_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HCS1967283.1"
                     /translation="MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLT
                     PDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE
                     VLLKSD"
     gene            complement(20492..22429)
                     /gene="sltY"
                     /locus_tag="OQQ76_000689"
     CDS             complement(20492..22429)
                     /gene="sltY"
                     /locus_tag="OQQ76_000689"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HCS1967284.1"
                     /translation="MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAW
                     DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQ
                     SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK
                     SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI
                     ISLANNPNTVLTFARTTGATDFTRQIAAVAFASVARQDAENARLMIPSLAQAQQLNED
                     QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW
                     LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYE
                     LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYA
                     FNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAW
                     NPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQ
                     QFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAY
                     YRYFMGDKPTLMSATEWGRRY"
     gene            22640..24307
                     /gene="ettA"
                     /locus_tag="OQQ76_000690"
     CDS             22640..24307
                     /gene="ettA"
                     /locus_tag="OQQ76_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017145039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HCS1967285.1"
                     /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG
                     KSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEAQLNPEHTVRESIEEAVSEVVNALK
                     RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKI
                     ANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD
                     RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWV
                     RQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYG
                     DRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVD
                     QFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER
                     GRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA
                     THILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK"
     gene            complement(24614..25846)
                     /gene="nadR"
                     /locus_tag="OQQ76_000691"
     CDS             complement(24614..25846)
                     /gene="nadR"
                     /locus_tag="OQQ76_000691"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HCS1967286.1"
                     /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS
                     AQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDD
                     TRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG
                     IKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIDTVLVDPKRTFMSISGAQIRENPFRY
                     WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE
                     IALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI
                     DEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEDDYD
                     SRFLRCVELVREMMGEQR"
     gene            complement(25867..27249)
                     /gene="radA"
                     /locus_tag="OQQ76_000692"
     CDS             complement(25867..27249)
                     /gene="radA"
                     /locus_tag="OQQ76_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HCS1967287.1"
                     /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT
                     VARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG
                     NPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
                     QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV
                     GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG
                     LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE
                     QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ
                     DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL
                     SDALSVFDDL"
     gene            complement(27298..28266)
                     /gene="serB"
                     /locus_tag="OQQ76_000693"
     CDS             complement(27298..28266)
                     /gene="serB"
                     /locus_tag="OQQ76_000693"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="HCS1967288.1"
                     /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG
                     RGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLG
                     KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRS
                     RVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKL
                     RLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGAND
                     LPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK"
     gene            28372..29016
                     /locus_tag="OQQ76_000694"
     CDS             28372..29016
                     /locus_tag="OQQ76_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HCS1967289.1"
                     /translation="MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQ
                     LEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIAR
                     SGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDN
                     TTNILRLMLLLSLAIGVVLTRTLLQGKRTHWQQSPFLLTASKPVPEEEESEKKE"
     gene            29044..30060
                     /gene="lplA"
                     /locus_tag="OQQ76_000695"
     CDS             29044..30060
                     /gene="lplA"
                     /locus_tag="OQQ76_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase LplA"
                     /protein_id="HCS1967290.1"
                     /translation="MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV
                     VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST
                     SIVLNALNALGVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLS
                     RLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITKAFFAHYGERVEA
                     EIISPDKTPDLPNFAEIFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHI
                     TRAQVFTDSLTPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIA
                     GAVR"
     gene            30092..30241
                     /locus_tag="OQQ76_000696"
     CDS             30092..30241
                     /locus_tag="OQQ76_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000566138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967291.1"
                     /translation="MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGIS
                     INSLK"
     gene            complement(30516..31235)
                     /gene="deoD"
                     /locus_tag="OQQ76_000697"
     CDS             complement(30516..31235)
                     /gene="deoD"
                     /locus_tag="OQQ76_000697"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HCS1967292.1"
                     /translation="MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVR
                     GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLR
                     DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLF
                     YSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER
                     QTTFNDMIKIALESVLLGDKE"
     gene            complement(31315..32538)
                     /gene="deoB"
                     /locus_tag="OQQ76_000698"
     CDS             complement(31315..32538)
                     /gene="deoB"
                     /locus_tag="OQQ76_000698"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS1967293.1"
                     /translation="MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEAD
                     NGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGH
                     WEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
                     MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIG
                     DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKAT
                     GLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMS
                     LLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLA
                     KYFGTSDMEYGKAMF"
     gene            complement(32590..33912)
                     /gene="deoA"
                     /locus_tag="OQQ76_000699"
     CDS             complement(32590..33912)
                     /gene="deoA"
                     /locus_tag="OQQ76_000699"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313368.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HCS1967294.1"
                     /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM
                     TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMV
                     AACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL
                     APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSE
                     ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT
                     MALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYL
                     PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ
                     VDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE"
     gene            complement(34039..34818)
                     /gene="deoC"
                     /locus_tag="OQQ76_000700"
     CDS             complement(34039..34818)
                     /gene="deoC"
                     /locus_tag="OQQ76_000700"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005097947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HCS1967295.1"
                     /translation="MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQTKTPVGNTA
                     AICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVD
                     VVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK
                     AGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI
                     ADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY"
     gene            35076..>35322
                     /locus_tag="OQQ76_000701"
     CDS             35076..>35322
                     /locus_tag="OQQ76_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HCS1967296.1"
                     /translation="MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQL
                     PAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLAN"
BASE COUNT         8372 a         9619 c         8844 g         8487 t
ORIGIN      
        1 ccgcccgtag cgccagtcag agtctgaata ttccttcaga aataaaagaa gggcaaacca
       61 ctgactggat caacattaac agtgataacg acaataaacg ctgcgtctca aaaatcacct
      121 tttccggtca tacggtgaac tcatcggata tggccacgct gaaaattatc ggcgacgact
      181 aacgccagaa tatagaagcc acaaaaaatg aatgttaatt acctgaatga ttcagatctg
      241 gattttcttc agcattgtag tgaggaacag ttggcaaatt tcgcccgatt gctcacccat
      301 aatgaaaaag gcaaaactcg cctctccagc gtactgatgc gcaacgaact gtttaaatcg
      361 atggaggggc atcccgagca acatcgccgc aactggcagc tgattgctgg agaattacag
      421 cattttggtg gcgatagtat cgccaacaaa ctgcgcggac acggtaaatt gtatcgggcc
      481 attttgctcg atgtttcaaa acgattgaag ctgaaagccg acaaagagat gtctacgttt
      541 gaaattgagc aacagttact ggaacaattt ctgcgtaaaa cctggaagaa aatggacgag
      601 gaacataagc aggagtttct gcacgcgttc gatgcgaggg tgaatgagct ggaagagctg
      661 ctgccgctgc tgatgaaaga caaattattg gcaaaaggcg tgtcgcattt gctttccagc
      721 caactgaccc gcattttacg cacccacgca gcaatgagcg tacttgggca tggtttgctg
      781 cgcggcgcgg ggctgggagg ccctgtaggt gcggcactaa atggggttaa agcggtcagc
      841 ggcagcgcct atcgcgtgac gattccagcc gtactgcaaa tcgcctgcct gcgccggatg
      901 gttagcgcca ctcaggtctg ataccggaaa ccggggaaaa ttttcatttt cccctcaaaa
      961 gatcgtagac actgccccac tggctgatta ttatgccgcg ccctgaaaac actacagtta
     1021 ttcagggaaa ttatttcacc attcattcga tgatgatttt tgaggaatta tgggcaacac
     1081 taagttggct aatccggcac cgctgggcct gatgggcttc ggcatgacca ccattctgct
     1141 taacctgcac aacgtgggtt atttcgctct ggacggtatt attcttgcca tgggcatttt
     1201 ctacagcggc atcgcgcaaa tttttgctgg tctgctggag tacaaaaaag gcaacacttt
     1261 cggtttaacc gcattcacct cttacggttc tttctggctg acgctggttg cgattctgct
     1321 gatgccgaaa ctgggtctga ccgatgcgcc aaatgcacag ttccttggtg tctacctggg
     1381 tctgtggggc gtatttacgc tgtttatgtt cttcggcacg ctgaaaggag cacgcgttct
     1441 gcaattcgtt ttctttagcc tgactgtgct gtttgccctg ctggcgatcg gtaacattgc
     1501 cggtaacgcc gcaatcatcc actttgccgg ctggattggt ctgatctgtg gtgccagtgc
     1561 aatctatctg gcgatgggtg aagtactgaa cgagcagttt ggtcgcaccg ttctgccgat
     1621 tggtgaatcc cactaattgt tttgagatcc ccccgctcgg ggggattttt ttattcgcta
     1681 acgtcgcgtc ttgcactctt cggtctgaat gcagcaacca cttctggtgc cgtttcaacg
     1741 tatggccctt ccagcaactg aatgcagtac ggtacgctgg caaaaatacc gtgtaccaca
     1801 acgttacccg cagcgtcctt cacaccttcc agcgtctctt taatagactt cggctgaccg
     1861 ggtaagttaa ggatcagcgc ctgtttgcga atcacaccaa cctgacgcga aaggatcgca
     1921 gttggtacaa aatgcaggct tatctggcgc atctgttcac caaagccagg catctcgcgg
     1981 tccgctactg ccagcgtcgc atcgggcgtt acgtcacgac gcgccgggcc agttccgccc
     2041 gtggtgagca ccagatggca actcatttca tccactagct cacacaacgt ttgctcgatg
     2101 atcgcctgct catcggggat taagcgggtt tccagttcaa acggcgtggt tagcgccgat
     2161 gtcagccatt cttccagcgc agggatgcct ttatcctgat aaacgccgct ggatgcgcga
     2221 tcagagatgg aaactaagcc aatacgtaaa gtattcatca agatttttcc gtttaaacag
     2281 tctcgttaaa cagaatgata cactgcgaag ggagtgacag acaggcttca gaagaggtag
     2341 cgtgaccgac ttcccggtca cgctaagaat gattacagca gatcgccgat cattttttcc
     2401 agtttttcct ggtcaatagc aaacttacgg ataccttccg ccagtttatc tactgccatt
     2461 ggatcctggt tgtgctgcca caggaactcg gactcagtga tacgcgccgg acgcgctttc
     2521 acttcgccgg tgtaagacag tttacgttcg atagcccctt cgctctcagc cagctctttc
     2581 agcagtgtag gtgcgatggt aagacggtcg cagcctgcca gttccagaat ttcgccgatg
     2641 ttacggaagc ttgcgcccat aaccacggtt tcataaccgt gctctttgta gtactggtag
     2701 atttcagata cagaaaccac gcccggatct tctgccggag cgtactcttt cttatcagta
     2761 ttcgctttgt accagtcaag aatacggcca acaaatggcg agatcaggaa cacgcctgct
     2821 tccgcacaag cacgagcctg agcgaaggag aacagcaggg tcaggttaca gttgatgcct
     2881 tctttttcca gctgttctgc agcacggata ccctgccagg tagaagccag tttgatcaga
     2941 atacgatcgt tgctaatacc agcatcgttg tagagtttga tcaggcgttt tgctttcgca
     3001 attgacgctt cggtgtcata ggaaagacgc gcatcaactt cagttgagat acgacccgga
     3061 accagtttca ggatttccag accaatattt actgccagtt tgtcggtcgc gtccacgatc
     3121 tgctgcgcgc gatcgttgct ctgctgtttc gcccaggcga cagcatcatc aatcaactta
     3181 cggtattccg gaatctgcgc tgcgttaaga atgagagaag ggttggttgt ggcatcctgc
     3241 ggttgataca gcttcattgc cgcgatgtcc ccagtgtcgg ccactacggt ggtgtactga
     3301 cgaagggagg tcaatttgtc cgtcatgata gtatttctct ttaaacagct tgttaggggg
     3361 atgtaaccgg tctgccctga tgatatcacg acgcaacgtc agcgcaaccg ccgacaagac
     3421 ggttatcgcc aggcgagact gtttcggatt tctgacactg cgttgatatc gcccgccatt
     3481 tttatacaaa acctcatgta tgctacgcag aagttatcaa gtacctcgta gcgtatatac
     3541 ttcttaaaca attggtaacg tttacacagg aaagtcatcg cgaccggcaa taagagggat
     3601 atgcatgcca gattttttct cctttattaa cagcgtcctt tggggatcgg taatgattta
     3661 cctgctcttc ggcgcaggtt gttggttcac ttttcgcacc ggatttgtgc agtttcgcta
     3721 catccgccag tttggcaaaa gtcttaaaaa tagcattcat ccacagccag gcggtttaac
     3781 ctcatttcag tcattgtgta ccagtcttgc ggcgcgcgtg ggtagcggca acctggccgg
     3841 cgttgcgctg gctattaccg ccggtggacc tagagccgtc ttttggatgt gggttgccgc
     3901 gtttatcggc atggcgacct cgtttgccga atgttccctt gcacaacttt ataaagaacg
     3961 tgacgtcaat gggcagtttc gtggcggacc ggcatggtat atggcgcgcg ggctggggat
     4021 gcgttggatg ggcgttctgt tcgccgtctt tttgctcatc gcctacggca taattttcag
     4081 cggagttcag gcgaacgccg ttgcccgagc cctgagtttt tcttttgatt ttcccccgct
     4141 ggtgacaggc attattctcg ctgtctttgc tctgctggca atcactcgcg gtcttcatgg
     4201 cgtcgcccgg ctcatgcagg ggtttgtccc gttgatggcg ataatctggg tgctgaccag
     4261 catggtgatt tgcgtaataa atatcgggca acttccccac gtcatttggt ctatttttga
     4321 gagtgctttt ggctggcagg aagcggcagg cggcgcggcg ggatatacct taagccaggc
     4381 gattactaac ggttttcagc gcagtatgtt ttccaatgag gcgggaatgg gttcgacgcc
     4441 aaacgcggca gcggcagcgg cgtcctggcc tccgcatccg gcagcgcaag ggattgtcca
     4501 gatgattggc atttttatcg acaccctggt catctgtacg gcaagcgcca tgctgatatt
     4561 actggcgggt aacgacacaa cctacatgcc gctggaaggt attcagctta tccagaaggc
     4621 gatgcgggtg ctaatgggtt cctggggtgc tgagtttgtt accctcgtgg ttattctgtt
     4681 tgccttcagc tccatcgttg ccaactacat ttatgccgaa aacaatctct tctttttacg
     4741 cctgaacacc cctaaagcga tctggtgttt gcggatctgc accttcgcaa cggtcatcgg
     4801 cggcaccttg ctaagccttc cgctgatgtg gcaactggca gatatcataa tggcctgcat
     4861 ggctattacc aatttgaccg ccattttact gctctcgcct gtggttcata ccattgccag
     4921 tgattatcta cgccagcgta aactcggcgt gcgcccggtg tttgatccgt tgcgttatcc
     4981 ggatatcggt cgccagcttt ctccggacgc gtgggatgat gtttcgcagg agtaatcaca
     5041 actatcgatc aactcattct ctttttttgc taaagtcggc ataaatttcc tgcaaggact
     5101 ggatatgctg attcttattt cacctgcgaa aacgcttgat taccaaagcc cgttgaccac
     5161 cacgcgctat acgctgccgg agctgttaga caattcccag cagttgatcc atgaagcgcg
     5221 gaaactgacg cctccgcaga ttagcacgct gatgcgcatc agcgacaaac tggcgggtat
     5281 caacgccgct cgctttcatg actggcagcc agatttcacg ccggcgaatg cccgccaggc
     5341 gattctggcg tttaaaggtg atgtctacac cggcttgcag gccgaaacct tcagcgaaga
     5401 cgatttcgat tttgcccaac agcatttgcg aatgctttcc ggcttgtatg gcgtactgcg
     5461 cccgctcgat ttaatgcagc cttatcgtct ggaaatgggg atccgtcttg agaatgcccg
     5521 agggaaagat ctgtatcaat tctggggaga tatcatcacc aacaagctga acgaggcgct
     5581 cgcagcacaa ggcgataatg tggtgattaa tctggcgtca gatgagtatt ttaaatcggt
     5641 gaagccgaag aaattgaatg ccgagattat caagccggtg ttcctcgatg agaagaacgg
     5701 caaatttaag atcatcagct tctacgctaa gaaagcacgc ggtctgatga gtcgtttcat
     5761 tattgaaaat cggctgacca aaccagagca actgactggt tttaatagcg aaggttactt
     5821 ctttgatgaa gcttcctcca gcaatggcga actggtgttt aaacgctacg agcagcgtta
     5881 agtttgcagt caatgccgga tgcggcgtga acgccttatc cggcctacaa aagcatgcag
     5941 attcaatata ttgcagaatt cacgtaggcc tgataagacg cgccagcgtc gcatcaggcg
     6001 ctgaatgccg gattgttacc cggcatttgt catttagcgg tgatgtttgc ctggaccatg
     6061 accgccgtga tgatcatgag gagctttctt atggtggcgc ggcggtggcg gcggtccgtg
     6121 tgggtgccag cgattgcctc gccattcata atgttgtttc caccagccgt ggtcgcgcca
     6181 gtgacctcca tcccagtaat agccacgatt atcacgatcg cctatctgta attttactga
     6241 cgggactaac gtaatttccg cagcctgtgc tgccatggga gcgaccagaa ctagggaaag
     6301 tgcgagtacg atagattgca tctttttcac aggttactcc ttttatcatt gcccgttatg
     6361 ggtcgatatc cggagattat gcgatgagaa cgacggttgt tattctccgc aatcctaatc
     6421 tctaagttac cgcatttatt gagaatttct cctttttccc tgtcgttttt ctccataatt
     6481 tcgtcataaa aaagccgggc tgcataaaag caaacccggc ctgattgaga taatgaatag
     6541 attttactga tgattcatca tcaatttacg caacgcagca aaatcggcgg gcagattatg
     6601 tgaaagcaag ggtaaatcag cacgttctgc cagctctttt ggcagatcca acgtttcacc
     6661 gagaatcgct tccacgctct ctttaaattt cgccggatgc gcggtgccga ggaacaagcc
     6721 atattcgcct ggattcaact ggtcacgcag cgcacgatac gctacggcag cgtgcggctc
     6781 cgaggtgtag cccagttctt ttaactcacg cattgtctgt tgcgtggttt catcatccac
     6841 ggctgcataa cccagctctt tcagttgcca gattttgcgg cggaacaact cttccacacg
     6901 cggccagttg ttcggctgac tcacgtccat cgcgttggat aacgtcgcct gagtcgcttt
     6961 gggtgaccac tgaccgtcgt gcaggaaacg tggcacggta tcgttcacgt tggtcgcagc
     7021 aataaaacgt ttcaccggca gaccgagtga cttcgccagc agacccgccg tcaaatcgcc
     7081 gaagtttccg cttggcaccg agacaaccag ctggttgcgc gcttcctgcg gcagctgcgc
     7141 aactgcttca aagtagtagc aaatctgcgc cagcaaacgg ctgatgttaa tcgagttagc
     7201 tgagtttaac cccagcgcca ctttcagctc ttcatcatca aacgcctgct tcaccagcgc
     7261 ctgacaggca tcgaaatcgc cgtcgatggc aacagtttcg atattgccgc ccaatgtaca
     7321 gaacagtttt tcttgcagtg gactgatttt gcctcgtgga tagaggataa ccactttcac
     7381 attcggtaaa ccgtagaaag catgagccac tgccgctccg gtatcaccgg aggtcgcggt
     7441 cagaatggtc actggcttat cgcccgcaat atgggtcagc atttgtgcca taaagcgacc
     7501 gccgaaatct ttaaatgcca gcgttggccc gtggaacaat tccagacaac cgacatcgct
     7561 ttcaacattg gcgaccggag ccgggaaggc aaacgccgcg cgcacgcgct cttccaggat
     7621 ttcctgcggg atttcatcac caataaacgc cgagaggatc ttcgcactgc gggtgacaaa
     7681 atccagcttc agcatctcat caatttcagt caggctgaat tccggcaggt cgtgcggaaa
     7741 aaacagcccc tgatttttgc ccaacccctg ggttacggct tgcgcaaagc tgacctgctc
     7801 attgtgatct ttcagattgt agagtttcat ttagttttcc agtactcgtg cgcccgccgt
     7861 atccagccgg caaatatgaa caaaaccttc ctgattttgc aggtagttct tacccaacca
     7921 gtcggcaacg cgctgggcgg tatccggctt gtcacacaga gcgaacaagg tcgggccgga
     7981 gccggagata ccgctcgcta ccgcgccgat ttccgcaacc gcctgccgcg cctgccggaa
     8041 gccaggcagt aaccgttcac ggtagggttc agcgataaca tctttcatca gcttcgcggc
     8101 aagctcaggc tgacgggaat agcaggcgtg aatgaagcca gccagatgtc gcccgtgcgc
     8161 aatgcaatcc tggcggcgat actgcgccgg taaaatagcc ctggcttctg ccgttgagac
     8221 tttaatcccc ggatacgcca gcacccacag ccactcatca aaccctggca cttgctggct
     8281 gataatgtcg ttttcttcga tcatcaactg cataccacca agaaaacacg gtgccacgtt
     8341 gtcgtaatga atgctgccgg agattcgtcc ttccagctcg cccatcaaag ccagcaaacg
     8401 agtgtcatta agcggcttgc cacagtgttc attcatcgcc atcagcgccg cgaccaccga
     8461 acaggcgctg gagcctaagc ccgaaccgat tggcatattc ttttccagag tcatcgccac
     8521 tggaatttgc ttgccaagct cctggcaaaa acgctcccag cactgataaa cgatattttc
     8581 ccgtggttct gacggcagct tatcggcaaa gcgtccgagg ttgttgagac tgaatgtctc
     8641 tgccgcctca accgtgacta catctccgag caatgcacca tcaacaggtg tcaccgccgc
     8701 cccgagcaca tcaaacccga cgctcatatt ggcactggaa gccggggcat aaactttaac
     8761 catgtcagac tcctaacttc catgagaggg tacgtagcag atcggcaaag acaccggcag
     8821 ctgtaacgtc attgcccgca ccatatccgc gcagcaccaa cggcagcggc tgataatagt
     8881 ggctataaaa ggccagggcg ttttcgccat ttttcacttt gaacagcgga tcattaccat
     8941 ccacttcggc aatcttcacg cggcaggcac catcttcatc aatattgcca acatagcgca
     9001 aaacttttcc ttcatcacgg gccttcgcca cgcgcgcggc aaagagatcg tcgagctgtg
     9061 acagattcgc cataaaagcg gcaacatcac cctcagcgtt aaactctgcg ggcagcacag
     9121 gttcaatttc aatatccgcc agctccagtt cacgtcccgt ttcacgagcg agaatcaata
     9181 gcttacgcgc tacatccata ccagaaagat catctcgcgg atccggttcg gtataaccca
     9241 tttcccgcgc cagagtagtc gcctcggaga aactcatgcc ttcgtctaac ttgccgaaga
     9301 tataagaaag cgaacctgaa agaatgccgg agaacttcat caattcatca ccagcattga
     9361 gcagattttg caggttctca ataaccggta atccagcccc aacgttggtg tcatagagga
     9421 atttacgccg cgatttttcc gccgcatgac gcaacagatg gtagtaatcc atcgacgagg
     9481 tgttggcctt tttgttcggc gtgacaacgt ggaaaccttc gcgcaagaag tcggcatatt
     9541 gatccgccac tgcctggctg gaggtgcagt caacaatgac cgggttcagc agatgatatt
     9601 ctttcacgag gcgaattaag cgcccgagat taaacggctc tttggcttgc gccagttctt
     9661 cctgccagtt ttccagattt aggccatgca cattggtgag cagtgccttc gagttggcaa
     9721 caccgcagac acgtaagtcg atatgtttat tcttcagcca gctttgttga cgcttcagtt
     9781 gctccagcag cgcaccgcca acgccaccga cgccaatcac aaacacttcg ataacctgat
     9841 cggtattgaa cagcatctga tgagtaacgc gcacgccagt ggtcgcatca tcgttattta
     9901 ccacgacaga gattgagcgt tcagaagatc cctgagcaat ggcgacaatg ttgatattgg
     9961 cgcgggccag cgcggcaaag aatttcgccg agatcccacg caaggtgcgc ataccatcac
    10021 ctaccaccga gataatggcc agccgttccg tcaccgccag cggctccagt aagccttctt
    10081 tcagttccag gtagaactct tcctgcattg cccgttcagc tcgcacacag tcgctttgtg
    10141 gaacgcagaa actgatactg tattcggaag atgattgcgt aatcagcacc acggaaatac
    10201 gggcgcgtga cattgcagca aagacgcgcg ccgccatgcc gaccattcct ttcatccccg
    10261 gaccagaaac gctgaacatt gccatattat tcagattgga aatgcctttg accggtaatt
    10321 cgtcttcatc acggctggca ccaatgagcg tacctggtgc ttgaggattt ccggtatttt
    10381 taatcaggca agggatctgg aactgggcga tgggggtaat ggtgcggggg tgaagaactt
    10441 tagcgccgaa gtaggaaagc tccatcgctt cctggtagga catcgacttc aacaacctcg
    10501 catcgggcac ctgacgcggg tcgcaggtat agaccccgtc aacgtccgtc caaatctcgc
    10561 aacaatcggc gcgtaaacag gcagccagca ccgccgcgga gtagtcggaa ccgttacgtc
    10621 caagtaccac cagttcgcct ttttcattac cggaggtgaa acctgccatc aacaccatgt
    10681 gatcagccgg aatgcggctt gccgcaatac ggcgggtgga ctcagcaata tcgacggtag
    10741 attcgaggta atgccccact gccagcagtt tttcgaccgg atcgataacg gtaacgttgt
    10801 gaccacgcgc ttctaacacg ccggccataa tggcgatcga cattttctcg ccacggcaaa
    10861 tcagcgcagc gttgatgcta tccgggcact gccccaacaa actaatgcca tgcaggacat
    10921 gttttatttg ggcaaattcc tgatcgacga aagttttcaa ttgcgccagc gggaaccccg
    10981 gctgggcggc ggcgagtccc gtcaaaagtt cggcaaaaat acgttcggca tcgctgatat
    11041 tgggtaaagc atcctggccg ctaatggttt tttcaatcat cgccaccagg tggttggtga
    11101 ttttggcggg ggcagagagg acggtggcca cctgcccctg cctggcattg ctttccagaa
    11161 tatcggcaac acgcagaaaa cgttctgcat ttgccactga tgtaccgccg aacttcaaca
    11221 ctcgcatggt tgttacctcg ttacctttgg tcgaaaaaaa agcccgcact gtcaggtgcg
    11281 ggcttttttc tgtgtttcct gtacgcgtca gcccgcaccg ttacctgtgg taatggtgat
    11341 ggtggtggta atggtggtgc taatgcgttt catggatgtt gtgtactctg taatttttat
    11401 ctgtctgtgc gctatgccta tattggttaa agtatttagt gacctaagtc aataaaattt
    11461 taatttactc acggcaggta accagttcag aaactgctat cagacactct ttttttaatc
    11521 cacacagaga catattgccc gttgcagtca gaatgaaaag ctgaaaaata cttactaagg
    11581 cgttttttat ttggtgatat ttttttcaat atcatgcagc aaacggtgca acattgccgt
    11641 gtctcgttgc tctaaaagcc ccaggcgttg ttgtaaccag tcgaccagtt ttatgtcatc
    11701 tgccactgcc agagtcgtca gcaatgccat gactcgttcg cgtaaagctt gcagttgatg
    11761 ttggtctgcc gttgtgtcac ttttcgtcgg ttgttgtatt aatgttgcta attgatagca
    11821 atagaccatc accgcctgcc ccagattgag cgaaggataa tccgccacca tcggcacacc
    11881 agtaagaacg tcagccaacg ctaactcttc gttagtcagc ccggaatctt cgcgaccaaa
    11941 caccagcgcg gcatggctca tccatgaaga tttttcctct aacagcagca ccagttctac
    12001 tggcgtggcg tagtaatgat atttcgcccg actgcgcgca gtggtggcga cagtgaaatc
    12061 gacatcgtgt aacgattcaa ccagtgtcgg aaaaacttta atattatcaa taatatcacc
    12121 agatccatgt gcgacccagc gagtggctgg ctccagatgt gcctgactat cgacaatccg
    12181 cagttcgcta aaacccatcg ttttcattgc ccgcgccgct gccccaatat tttctgctct
    12241 ggcgggtgcg accagaataa tcgttatacg catattgcca ctcttcttga ccaaatgacc
    12301 gcgaacaggg tgatcactgt caacttatta cgcggtgcga atttacaaat tcttaacgta
    12361 agtcgcagaa aaagcccttt acttatctta aaaaaggcta aactatttcc tgactgtact
    12421 aacggttgaa ttgttaaaaa atgctacata tccttctgtt tacttaggat aattttataa
    12481 aaaataaatc tcgacaattg gattcaccac gtttattagt tgtatgatgc aactagttgg
    12541 attattaaaa taatgtgacg aaagctagca tttagatacg atgatttcat caaactgtta
    12601 acgtgctaca attgaacttg atatatgtca acgaagcgta gttttattgg gtgtccggcc
    12661 cctcttagcc tgttatgttg ctgttaaaat ggttaggatg acagccgttt ttgacactgt
    12721 cgggtcctga gggaaagtac ccacgaccaa gctaatgatg ttgttgacgt tgatggaaag
    12781 tgcatcaaga acgcaattac gtactttagt catgttacgc cgatcatgtt aatttgcagc
    12841 atgcatcagg caggtcaggg acttttgtac ttcctgtttc gatttagttg gcaatttagg
    12901 tagcaaacat gcagaccccg cacattctta tcgttgaaga cgagttggta acacgcaacg
    12961 cgttgaaaag tattttcgaa gcggaaggct atgatgtttt cgaagcgaca gatggcgcgg
    13021 aaatgcatca gatcctctct gaatatgaca tcaacctggt gatcatggat atcaatctgc
    13081 cgggtaagaa cggtcttctg ttagcgcgtg aactgcgcga gcaggcgaat gttgcgttga
    13141 tgttcctgac tggccgtgac aacgaagtcg ataaaattct cggcctcgaa atcggtgcag
    13201 atgactacat caccaaaccg ttcaacccgc gtgaactgac gattcgtgca cgcaacctgc
    13261 tgtcccgtac catgaatctg ggtactgtca gcgaagaacg tcgtagcgtt gaaagctaca
    13321 agttcaatgg ttgggaactg gacatcaaca gccgttcgtt gatcagccct gatggcgagc
    13381 agtacaagct gccgcgcagc gagttccgcg ccatgcttca cttctgtgaa aacccaggca
    13441 aaattcagtc tcgtgctgaa ctgctgaaga aaatgaccgg ccgtgagctg aaaccacacg
    13501 accgtactgt agacgtgacg atccgccgta ttcgtaaaca tttcgaatct acgccggata
    13561 cgccggaaat catcgccacc atccacggtg aaggttatcg cttctgtggt gatctggaag
    13621 attaatcggc tttaccaccg tcaaaaaaaa cggcgctttt tagcgccgtt tttatttttc
    13681 aaccttattt ccagatacgt aattgatcgt ccattgtaac ttctttactg gctttcattt
    13741 tcggcagtga aaacgcatac cagtcgatat tacgagtcac aaacatcatg ccggccagcg
    13801 ccaccaccag cacactggtt cccaacaaca gcgcgctatc ggcagagttg agcagtcccc
    13861 acatcacacc atccagcaac aacagcgcga gggtaaacaa catgctgttg cgccagcctt
    13921 tcaataccgc ctgcaaataa ataccgttca ttaacgcccc aatcagactg gcgattatcc
    13981 atgccacggt aaaaccgata tgttcagaaa gcgccagcaa gagcaaataa aacatcacca
    14041 atgaaagccc caccagcaaa tattgcattg ggtgtaaacg ttgcgcggtg agcgtttcaa
    14101 aaacaaagaa cgccataaaa gtcagtgcaa tcagcagaat ggcgtactta gtcgcccggt
    14161 ccgttaattg gtattgatcg gctggcgtcg tcactgcgac gctaaacgcg gggaagtttt
    14221 cccagccggt atcattgcct gaagcaaaac gctcaccgag attattagca aaccagctgc
    14281 tttgccattg cgcctgaaaa cctgactcgc taacttcccg tttggctggt agaaaatcac
    14341 ctaaaaaact gggatgcggc cagttgctgg ttaaggtcat ttcgctatta cgcccggcag
    14401 gcaccacaga aagatcgccg gtaccgctta aattcagtgc catattcagc tgcaggttct
    14461 gcttccgcca gtccccttcg ggtaaaggga tatgcacgcc ctgcccgcct tgctctaacc
    14521 cggtaccggg ttcaatggtc agtgccgttc cgttaacttc aggcgctttc accacaccaa
    14581 taccacgcgc atccccgacg ctaatcacaa taaagggctt gcctaagatg atatttggcg
    14641 cgttgagctc gctaagacgc gaaacatcga aatcggcttt tagcgttaaa tcactgtgcc
    14701 agacctgacc ggtataaatc cctatcttgc gttcttccac gttctgattg ccatcaacca
    14761 tcaatgactc aggtaaccaa aaatggataa aacttcgttt ccgctccacg gttttatcct
    14821 cttcctgcac cgtataaagc tcggtcacag gaatagcgat aagcggccca acgagttttt
    14881 gcggcccgct ggtactttgg cgaatcgcat cttccacatc gctacggtaa tcggcacgtt
    14941 cgacaatcac ttgccgaatc agcattatcg gaatcaacaa cagcaatact gcaccaaaca
    15001 aggtggtcat tttccagaac aggggggatt tcaacatagt cttctccttt gcaatggcag
    15061 caggatacga aggctatgtg ggaagaattt gaagctatgt gaagtgacgg tgaagtcgaa
    15121 gcgaggccag cacgccacct tcctgcacgt tgcgcagcgt gacttcgccg ttaaacaaac
    15181 gggcgacctc actgacgaac gccaacccca gaccgctgct tttttgccca tttgcacgcg
    15241 gcaaagagta aaagcgttca aaaatacgtg acagcgcgta gtcaggaata ccactaccgg
    15301 tatccagcac cttaagggcg acgtgttcct gatccacttc ggcgcttagc gttatgcgac
    15361 cgctctcggg ggtaaaatcg atggcgttat ccagtaaatt ccccagcgcc tgctccagta
    15421 acgccggttc agcagcaaca ttaacctcag tgggcataac atgtagagtg atgttttttt
    15481 ctgccaactg cacggtgcgc gcttcgctga cgcggcgaaa taatgccgcc acatcaacaa
    15541 cagtcagaac gacttcctga cgattctcca gtcttgcctg gcgtagtaac gtttctacca
    15601 atgcctgcat acgcgcattt tgcgtcagaa tgttgtcggt aaaacgagcc accacttccg
    15661 gtggcggacc ttcgcgtaaa atttccgccg cgccacgaat cgccgccagt gggcttttta
    15721 gctcatgggt taacgcataa acatactgct caatatagtt tttcccttcc agcttcacgc
    15781 gcatactttc cagcgcctgc gcaagcttac gcaactcgct actgccgagt tcaggaagag
    15841 gaacgggctt attgtcagtg acggaatcgg catagcgagt gagccgggca atggagcggt
    15901 tgatccacca aaccatgcct gcgccaatca ccagtgcaat ccccagcaaa atggcgctgg
    15961 cccataaaat tcgccgctcg ctacgcttaa tgaccggagc catcgccgcg ttcggtttgc
    16021 ctacgctcaa aacgccaata agccgcgagc cgtccataat cggcgcggca acatacatca
    16081 ccgaactttc gggatcggca ggattttgca acgtgctgcg cgcaccatac tgaccacgca
    16141 acgttagcca gacgtcattc cagcgcgaat aatcctgccc aacggcttta tttgccgaat
    16201 cgaacaatac tttaccctgc gaatcggtca tatagacatg atattcattg cgcactttgt
    16261 taatgccacc gatattggcg cgaaacggac gatgttgtag ctgattaaac gcctgcgcca
    16321 gttgcccatg cgttgggtcc ccagagagca aatcgggacg cgccagctcc gccagcaacg
    16381 ttgcggtgtc gatcaacgtc ccctccgttg ctcttcgcac gcccggttta acttctttga
    16441 caaaaatagc cagtacgaac caggccgcca ccgccaccag taaaaaatag cccagcagca
    16501 accgcatgcc gatacgcatt acaggcccct caggctatat cccatgccgc gatgagtatt
    16561 aatcggtgaa agatcggggt tgatggcacg cagcttggca tgcaacgttt taatgtgggt
    16621 atcaacggtg cgatcgtagg tgtcctgcgc atcttcccac acgctatcca tcagttgctg
    16681 gcgggaccag acgcggcctg gcgacttgag taacgtcttc agcaataaaa actcataccg
    16741 cgtcagcgtt aatggcgtgt caaaccagct gatctgcgcc gcgggttcat tcaattcaaa
    16801 atgaccaata cggatgacgg gagacggcga cgagaacttc ttcacccgac gcagtaaggt
    16861 gcgcaccctg gcgcacactt cgcggggtga aaacggttta gccacatagt cgtcagcgcc
    16921 aatttccagc ccaagcaggc gatcgacctc ttcacttcgg gccgtcagga acagtacagg
    16981 taacgccgga tggagcgcca gtaactggct gcacaattca aagccgctga tatcaggcaa
    17041 accaacgtcg agaatcatga cgtcgggaac cagctggcga gctttatcca gcaccggcaa
    17101 gcctcgctca aagacctcga cggcaaaacc ttcctgctgc aacatgtaga ccagcgtgtc
    17161 ggctatccct tgctcatctt ccactaacca gaccgtttcc cgttgtataa atcgcctctg
    17221 ttattgccgc cacggcatga caggaaccgc gctaatcgcg tttttcggcg aaccttctac
    17281 aactttgtcg gagtaagcca gataagcgag cgcgttgcgt ttggcgtcat aaaagcgcac
    17341 gacctgtaac gacttaaaga ccagggacgt gcgttttttg aatactacct cgccctgagc
    17401 tttgccgttt ttaatacgat ccgacagttc aatcggcccg acttgctgac aagaaatagc
    17461 cgcatcggag gtatcttccg ccagacccaa tcccccttta ataccacctg ttttcgcccg
    17521 gctcacataa caggtgacat ttttcacatc gggatcgtca aaggcttcca caacaatttt
    17581 gtgatccggg ccgatcattt taaatacggt gtcgaccgaa ccaatctctt ctgcatgagc
    17641 caatggcccc agcattatca ggcttaaaga caggatcaaa tgcttgtatt tcatattgtt
    17701 accattttta tctattacac gagcaattag ttcgtcacgg taaataacat attgattaag
    17761 aacaaaatct caatactttt atttccgtca agccctaaaa catactctac taagaaaaaa
    17821 acactgaatg ctaaaacagc aaaaaatgct attatccaat tacctgatgt caggtgctcg
    17881 ttgttgaaag gatgaggata ttttatggat caggccggca ttattcgcga ccttttaatc
    17941 tggctggaag gtcatctgga tcagcccctg tcgctcgaca atgtagcggc gaaagcaggt
    18001 tattccaagt ggcacttaca gagaatgttt aaagatgtca ctggccatgc tattggcgcg
    18061 tatattcgtg ctcgtcgttt gtcgaaatcg gcggtcgcac tacgcctgac tgcgcgtccg
    18121 attctggaca tcgcgctgca ataccgcttc gactctcaac agacatttac ccgcgcattc
    18181 aagaagcagt ttgcccagac tcctgcactt taccgccgtt ctcctgaatg gagcgccttt
    18241 ggtattcgcc cgccgctacg tctgggtgaa ttcacaatgc cagagcacaa atttgtcacc
    18301 ctggaagata cgccgctgat tggtgttacc cagagctact cctgttcgct ggagcaaatc
    18361 tctgatttcc gccatgaaat gcgttatcag ttctggcacg attttctcgg caacgcgccg
    18421 accattccgc cagtgctcta cggcctgaat gaaacgcgtc cgagtcagga taaagacgac
    18481 gaacaagagg tattctatac caccgcgtta gcccaggatc aggcagatgg ctatgtactg
    18541 acggggcatc cggtgatgct gcagggcggc gaatatgtga tgtttaccta tgaaggtctg
    18601 ggaaccggcg tgcaggagtt tatcctgacg gtatacggaa cgtgcatgcc aatgctcaac
    18661 ctgacgcgcc gtaaaggtca ggatattgag cgatactacc cggcagaaga cgccaaagcg
    18721 ggagatcgcc caattaatct gcgctgtgaa ctgctgattc ctatccgccg ttaacgctgc
    18781 agctcatcta atgcaggggc gtccagatgc gagatgtccc ctgcggtttc aacgacccag
    18841 ccagacgcca gccacaggct ttcctgataa tccacgcgcg aaatagaaca gttacgcaga
    18901 cgtaagcggc gcgctgccca tgctggtaat ccgagaatcg tactcaccag acatcccagt
    18961 gcaataccat ggctcaccag cagcggtcgg cttccctgcg gtaagtcccg gcaagattcc
    19021 agtgccgcat tgacgcgatc gctgagctcc tgcattgact cgccttcagg aatacgcccg
    19081 tcaacggtgc cattgaccag ctgccgacgc cagttctctt cttcttcggt cagagaatcg
    19141 atatgtcttt tttccagcac acccatgttt aattcacgca ggcgagaatc aaagatgatg
    19201 tcacagccgc aggcctgggc gatgatttcc gccgtacgcc gggtgcgtcc taaatcgcta
    19261 ctgataatat gcgtaatgcc aagctctttg gcacgggttg ccacctgcat cgcctgttgc
    19321 tcacctttgg cggtcagcgg gctgtcagac tggccctgaa tacgtcgctc ggcgttccac
    19381 tgcgtttcac cgtggcggac taggtatacc tgtaacatgc tttttttccg tatactgctg
    19441 taacgttaat tttctgagta atgctgatta tgcaccaagt tgtctgtgcg accaccaatc
    19501 ccgctaaaat tcaggccatt ctgcaggcat ttcacgagat cttcggcgaa gaatcctgcc
    19561 atattgcatc cgttgccgtc gagagcggtg taccggaaca gccctttggc agtgaggaaa
    19621 cgcgcgctgg cgcacgaaat cgggtagcaa atgcccgccg tttacttcca gaggctgatt
    19681 tttgggtggc gattgaagct ggcatcgatg gtgacagcac tttcagttgg gtggtgattg
    19741 aaaacaccag ccagcgcggc gaggcgcgtt cggctacttt gccgttacct gcggtgattc
    19801 tgcagaaagt gcgtgaaggt gaggcgcttg gtcccgtgat gtcgcgttat accggtattg
    19861 atgagattgg tcgtaaggaa ggggcgatcg gcgtgtttac cgccgggaaa ctcactcgcg
    19921 ccagcgtcta tcaccaggcg gtgatcctgg cgctgagtcc gtttcacaat gccgtgtatc
    19981 aggcattgta ggacggataa ggcgttcacg ccgcatccgg cattcggtgc acgatgcctg
    20041 atgcgacgct gccgcgtctt atcaggccta caaaatcaat cgcttttcag caacacctct
    20101 tccagccact ggcgcagctc cacgggcgcg gctttcaggc tgttagatcc acgcgtaatc
    20161 gtcgcgatgc ccgcgccgag ttcatttttt aactcacgct gactcatttc gccacgcaac
    20221 agctcttcga caatacgcac gcgagtcccc aacgcttcgc gctcatctgg cgtcagcatc
    20281 aggtttaaca acggtaaatg gagatcgttt tggtaggcat tcttaagcag gtcgacaaaa
    20341 cgtaaccact cctggtgacg ctgttctgcc atcgctgctg aatagggtga ttgttgggcc
    20401 ataatatgtc gccattgtta gcgggggaag caaaatgcct cccccggttg tactcgctaa
    20461 agagtacgat agcatatcat aaacgtgcgg atcagtaacg acgtccccat tccgtggcgc
    20521 tcatcaacgt cggtttatcc cccatgaaat aacggtagta agcgtcataa gccagcacgt
    20581 tcttcacata accgcgcgtc tcggagaacg gaatactctc gacaaatgcc acagcgtcga
    20641 tacgcccggc gctgttgcca agccaggttc gcacccgtcc aggtccggcg ttataagctg
    20701 ctgaggagaa aatacggtta ttgccaaact gctgataaac atattgcagg taactggtgc
    20761 caatgttgat attcgtttcc ggatccagca attgcccagg gctgctataa ccaggaatag
    20821 agaacatctt caccgtatgg gtcgctgtac caggcataat ctgcatcagg ccgctggccc
    20881 ctaccggtga tttcactttc ggattccagg cgctctcctg acgggcaatc gccatcgcat
    20941 agctttgcgg gatctctttc ccactggtgt aacgtttgaa aagatcgttg taagccagcg
    21001 ggaatcgctc ttccagatga tcccaaagct tcccggcgat cgttgcctga acgctaagat
    21061 cccaccattg gttattgaaa gcataccgag ccagttgagc ctgctctgtt tttgacttgc
    21121 tcttcaccag attggcccac tcgctacgcg cggtgttatc gagattccag tacatcaact
    21181 cgcgcacgcg cgccatctcc ggcccctgag tcagggcgct gtcaacattc tgcggcgctt
    21241 tatcaatctt cagctcatac tcttctccga tgcgttgtgc tgcaaccatc gggtagaaac
    21301 cacgctgttg catgagttga tgcaaaatct ctttcgcttc agcttcacgt ccgcgttcca
    21361 gcaataaatc cgcctgccag taacgccatt catctttctc ttttgcttcc atcggcagac
    21421 gcgccagcca ggtattcagg ccgcgacgat cgccggtgcc aagtgccatt cgcacacggc
    21481 gttcaatcaa cgacgtggat tgcgagcgca taatggcgtc atcgcgccat ttcgcctgct
    21541 cgtcggtgac atcgttgccc atcaaacgcc aggcgacgat atcgcgcagc tcctgaatct
    21601 gatcttcatt aagctgctgc gcctgggcaa gcgacgggat catcagccgt gcattttcag
    21661 catcctgccg cgccacactg gcaaacgcca ccgctgctat ttgacgggta aaatcggtcg
    21721 ctccggttgt acgcgcgaag gtcagtaccg tattagggtt gttcgccagt gaaatgattg
    21781 ccgaggcgat agtctggtaa tcggcaggca tctgccctgc cagcactgtt accaggccag
    21841 tgttacccgc tttcatcgcc agacggatac gctctaaata cgccagcgga tcttgtttac
    21901 ctgacgcacg ccagacgcta aataacttgt cacaggcgtt aggctggctc ttgccggtta
    21961 gccacagctc tttcgcccct tgccaggctt cttcactctg cccggtgttc catttcgcat
    22021 agtagtaatt acattgcgct tcggtagttc cgggcttttc cgggctaaag gctaacaagc
    22081 cacgccagtc ttcacgccgc gccagttcat tgacgaaacg agattgcagc gtgcgagcgg
    22141 gaggaagcgt ggggttagcg cgaacaaagt tagtgaccgt caccgccggt tgattcatca
    22201 gatcatcggt gatctggcgg tattccaggt agggataaag cggataatcc ttcagtccag
    22261 gcatcatttg ttcgaccaca tccatttgtc gattatccca ggcctgcttg atttgcgcgt
    22321 aacggctacg ctgctcatcc agtgagtcgg ctcgcgccac gctgctgacc gtcagcagac
    22381 agacaccggc agccaacagc cgccaggtaa cttgtttggc tttttccaca agcgcatcct
    22441 ctaagtgtaa atacatcaat gcagcgtcat gccgcgtaat agatttatgc taaccagtca
    22501 ttgccgttta cgccacgtta cggacacttt tttactttta ctgcgaagat gatcgaccaa
    22561 ctgggattag gcggggaaaa aggctacact tcgcctttga aaactcatca tcacgataaa
    22621 catagaggcg aagtccaacg tggctcaatt cgtttatacc atgcatcgtg tcggcaaagt
    22681 tgttccgccg aaacgtcata ttttgaaaaa catctctctg agtttcttcc ctggggcaaa
    22741 aattggtgtc ctgggtctga acggcgcggg taagtctacc ctgctgcgca ttatggcggg
    22801 cattgataaa gacatcgaag gtgaagcgcg tccgcagcca gacatcaaga ttggttacct
    22861 gccgcaggaa gcgcagctga acccggaaca caccgtgcgt gagtccattg aagaagcggt
    22921 ttctgaagtg gttaacgccc tgaaacgcct ggatgaagtg tatgcgctgt acgccgatcc
    22981 ggatgccgat tttgacaagc tggccgctga acaaggccgt ctggaagaga tcattcaggc
    23041 tcacgacggt cataacctga acgtacagct ggagcgtgcg gcggatgcgc tacgtctgcc
    23101 ggactgggac gcgaaaatcg ctaacctctc cggtggtgag cgtcgtcgcg tagcgttgtg
    23161 ccgcctgctg ctggaaaaac cagacatgct gctgctcgac gaaccgacca accacctgga
    23221 tgccgaatcc gtggcctggc tggaacgctt cctgcacgac ttcgagggca ccgtggtggc
    23281 gattacccac gaccgttact tcctcgataa cgttgcaggc tggatcctcg aacttgaccg
    23341 cggtgaaggt attccgtggg aaggcaacta ctcctcctgg ctggagcaga aagatcagcg
    23401 cctggcgcag gaagcttcac aagaagcggc gcgtcgtaag tcgatcgaga aagagctgga
    23461 gtgggtacgt cagggaacta aaggccgcca gtcgaaaggt aaagcacgtc tggcacgctt
    23521 tgaagagctg aacagcaccg aatatcagaa acgtaacgaa accaacgaac tgtttattcc
    23581 acctggaccg cgtctgggcg ataaagtgct ggaagtcagc aacctgcgta aatcctacgg
    23641 tgatcgcctg ctgattgatg acctgagctt ctcgatcccg aaaggggcaa tcgtcgggat
    23701 catcggtccg aacggcgcgg gtaaatcgac cctgttccgt atgatctctg gtcaggaaca
    23761 gccggacagc ggcaccatca ctttaggtga aacggtgaaa ctggcatcgg ttgatcagtt
    23821 ccgtgactca atggataaca gcaaaaccgt ttgggaagaa gtttccggcg ggctggatat
    23881 tatgaagatc ggcaacaccg agatgccaag ccgcgcctac gttggccgct ttaactttaa
    23941 aggggttgat cagggtaaac gcgttggtga actttccggt ggtgagcgcg gtcgtctgca
    24001 tctggcgaag ctgctgcagg ttggcggcaa catgctgctg ctcgacgaac caaccaacga
    24061 cctggatatc gaaaccctgc gcgcgctgga aaacgccctg ctggagttcc cgggctgtgc
    24121 gatggttatc tcgcacgacc gttggttcct cgaccgtatc gccacgcaca tcctggacta
    24181 ccaggatgaa ggtaaagttg agttcttcga aggtaacttt actgagtacg aagagtacaa
    24241 gaaacgcacg ctgggcgcag acgcactgga gccgaagcgt atcaagtaca agcgtattgc
    24301 gaagtaatgc gtaaaatgcc ggatgcggcg tgaacgcctt atccggccta caaaccaaga
    24361 aatttcaata cgttgtgaat ctccaggcct gataagacgc ggtaagcgtc gcatcaggca
    24421 ttgagcaccg aatgccggat acggcgtgaa cgccttttcc ggcctacaat agccttagta
    24481 tccgcaattt cgtagcgggt cacccgtgct gattctttta aaccttgttt aatctcgaca
    24541 gcctcttcca gagaggtttt caactcatca aaaaacttat tttatacctc gcctttgagc
    24601 cgtttcatcg cggttatctc tgctccccca tcatctcccg caccagctcc acgcagcgca
    24661 ggaaacggct gtcataatcg tcctcttcaa cccgcacgaa ttcgatattg ttctcttcca
    24721 gcatctccac cagcaagttc tggaactctt tgcgatccac cgaactgccg aggctgcgta
    24781 aaccatccgc cacccacggc gtgttgttct ccagcaggat caccagatcg aaacggtatt
    24841 catcaatcaa cgcctgtacg aacggatgct cacgcccttc gtactttttg cagaacgcct
    24901 gggtagtgac aaaatcagtg tcaataaacg ccactttatt ggcatatttc actgcaaaat
    24961 caatgtattg tgcgtgtccc agcgcgattt tatcgtaatc ggaatactgc aatgcgatct
    25021 catcaccgcc gaggtgtgaa aagacataat cgcgaccata ttcccacgca ctggtggtat
    25081 tgaagatatt ggcaagtttg tttaccaggg tggatttacc gctcgactcg ccaccaagga
    25141 tcgccacggt acgtacaaag aacggcttca cttccgtagg aatatattcc cagtatcgga
    25201 acgggttttc gcggatctgc gcaccgctga tactcataaa ggtacgtttc ggatcgacca
    25261 gcaccgtatc gatccccaga tgttccatat actgtggcgc atcggcttct tccgaggtgt
    25321 agatcaggtc cggctgaatc cccttttcag ccataaactt tttgatgccg ttgctccaca
    25381 catcccagcc gtgcggatac ggctccatgc cctcttcgtt gaaagcatga atgcgaatat
    25441 ttttctgata tttaaaagtt tgtaataacc agcgcagacg atccggcacc gtgggctgct
    25501 gcgacatggc gctgtcttca aacaacgcgc ggtcgcgggt atcgtcaaac cccataatga
    25561 tatgcagctc gtcaacctgg ctacaggcgc gctggataag gtagatatgt ccggtatgca
    25621 gcgggtagaa cttaccgaat acgacaccaa tggttttctt ctgtcgggga aattcaagcc
    25681 ccaaaaaacg gtgcaacgcc tccagctttt gcgcgctggg gcttttaatt ttggcattca
    25741 gtaactggct taaataccct ttggtcatac cgctggcatc agctacctgc tgtagcgtgc
    25801 agccctgttg cttgatggca gttttcaggt aatcaaatga cgacatatct ccctccgtat
    25861 ctctcattat aagtcgtcga acacgctaag cgcgtcggag agttttttaa cgccaaaaat
    25921 ctgcatccct tccggcgctt ttttcggtac gttagccgcc ggaacaatcg cccggcgaaa
    25981 accgtgtttc gccgcttctg aaattcgttc ctgaccgctg ggcaccgggc ggatctcccc
    26041 tgccagcccg acttcaccaa acaccaccag atcctgtggc agcggtctgt cacgcaggct
    26101 ggaaaccatc gccagcagta acgctaaatc ggcactggtt tcggttacct tcacgccgcc
    26161 gaccacgttc acaaatacat cctgatcggc catttgcaga ccaccgtgac ggtgcaagac
    26221 agccagcagg attgccagac ggttttgttc cagccctact gccacgcggc gcggattcgc
    26281 catcatcgag tgatcgacca gcgcctgaat ctccaccagc aacggacgcg ttccttccca
    26341 caccaccatc acggagctgc cggaggtcac ttcatctccg cgacttaaga aaattgccga
    26401 agggttgctg acttcacgca gcccctgttc ggtcatcgcg aagacgccca gctcattcac
    26461 cgcgccgaag cggtttttat ggctgcgcaa ggtgcgaaaa cgggagtcgg catcaccatc
    26521 cagaagcacc gaacagtcga tacagtgttc cagcacttta gggccagcca gcgagccatc
    26581 tttggttacg tgcccaacca tgacaatcgc cacaccgcgc gttttggcga agcgcgtcag
    26641 ataagccgcc gtttcacgca cctgcgccac gctaccaggc gatgattgta catccgccat
    26701 atgcatcacc tggatcgagt caattaccat cagtttcggt tgctcttctt cggcaatcag
    26761 gcagatctgt tcgatgctgg tttccgacaa catattgaga ttgtcagtcg gcaggccaag
    26821 gcgatgagcg cgcattgcca cctgttgcag cgactcttcg ccagtgacat acagcgtttt
    26881 catctgctgg gccagtttgc acagcgtttg cagtagcagc gtggatttcc ccgcacctgg
    26941 gttaccgcca atcagaatgg cgcttcccgg caccacgccg ccgcctagta cgcggtcgaa
    27001 ctctttaaat ccggtggaaa aacgcggcag ctcttcaagg ctgatatcgg agagtttctg
    27061 gacttttgcc accccggcgc taccggcata gccgctgaga cgctcgttac gcgccaccgt
    27121 tggcgacgca gcaagacgca cctcggtgat ggtgttccag gcatgacagg cactgcactg
    27181 cccctgccag cgcggataat cggccccgca ttcattacaa acaaaggcgc gttttggagc
    27241 ttttgccacg gtgtacctcg ttaatgctgt gccgcccgca ggatggcggg cgagcaatta
    27301 cttctgattc aggctgccag agaggatgca gaataccccc atcaggtcag cgtgacggat
    27361 ggtgacttcc gccttttcat tcacttttgg cttggcatgg taggcaatcc ccagccctgc
    27421 tgctttgatc atcggcaggt cattagctcc atcgccaatc gccacggtct gcgccagcgg
    27481 gatttcatac tcctgcgcga ggcgagtcaa agttttcgct ttgtactgcg cgtctacgat
    27541 gtcgccgatc acattgccgg taaatttacc gtccatgatc tccagttcat tggctaccac
    27601 ggcggtcagg cgcagcttgt cgcgcagata ttcagcaaag aaagtaaagc cgccggaggc
    27661 aatcgccact ttccagccca gcgtttccag cttgagcacc agttgcgtta agcctggcat
    27721 cagcggcaga ttttcacgca cctgttgcag aatattggcg tcagcgcctt tcagcgtcgc
    27781 cacacggctg cgcaggctgg cggtaaaatc gagttcgccg cgcatcgccc gttcggttac
    27841 ttccgccacc atctcgcccg ttccggccag tttggcaatt tcatcaatac attcaatctg
    27901 gatggcggtg gaatccatgt ccatcaccag caaacccggc gtgcgcaggt gcgggatttt
    27961 ccccagcggg gcgacatcca gttgcgcttc atgggccagg cgcgtagccc gtgcggtgag
    28021 tgaacctgcc agacgaatca cctgataatc ttccacgcac caggcggcaa caatcaccat
    28081 cgccgcaccc agtttgctct ggtattgggt cagacgctgt ttatccagcc cacgaccata
    28141 cagcagccag ccgctacgac ctgcgtggta atccagtggc atcacttcat caccacttaa
    28201 tgaaagaggc agaccaggcc ataaagagac atcttcaggc aggtcgcacc aggtaatgtt
    28261 aggcattaag gctcctgtaa aatcgttcga agcagggaaa ataacgcatg aggctacctt
    28321 gtatccattg cttctggcaa cattaagtct caaattttca aagggtggaa gatggctcgc
    28381 acaaaactga aattccggct gcatcgggca gtgattgtcc tgttctgtct tgccttgtta
    28441 gtggcgctga tgcagggagc gtcatggttt agtcaaaacc accagcgaca acgtaatcca
    28501 cagctggaag aactggcccg caccctggcg cgtcaggtaa cgctgaacgt tgcaccgctg
    28561 atgcgtaccg actcaccgga tgaaaaacgc attcaggcga tcctcgatca gttaacggat
    28621 gaaagccgta tcctcgacgc gggtgtgtat gacgaacaag gcgatcttat cgcacgttct
    28681 ggcgaaagcg tcgaagtgcg cgaccggctg gcgctcgacg gtaaaaaagc gggcggctat
    28741 tttaaccagc agattgtcga accaattgcc gggaaaaacg gaccgctcgg ctatctgcgc
    28801 ctgacgctcg acacccatac gctcgccacc gaagcccaac aggtggataa caccactaac
    28861 attttacgcc tgatgttgct gctttcactg gcaatcggcg tagtgctgac ccgcacgctg
    28921 ctacagggta aacgtaccca ctggcagcaa tcgcccttcc tgttaaccgc cagcaaaccg
    28981 gtgccggaag aggaagaaag cgagaaaaaa gagtgaccca ttactacaag aaaggaaatc
    29041 gttatgtcca cattacgcct gctcatctct gactcttacg acccgtggtt taacctggcg
    29101 gtggaggagt gtatttttcg ccagatgccc gccacgcagc gcgttctgtt tctctggcgc
    29161 aatgccgaca cggtagtgat tggtcgcgcg cagaacccgt ggaaagagtg taatacccgg
    29221 cggatggaag aagataacgt ccgcctggca cggcgcagta gcggtggcgg cgcggtgttc
    29281 cacgatctcg gcaatacctg ctttaccttt atggctggca agccggagta cgataaaacc
    29341 atctccacgt cgattgtgct caatgcgctg aacgcgcttg gcgtcagcgc cgaagcgtcc
    29401 gggcgtaacg atctggtggt gaaaaccgcc gaaggcgacc gcaaagtctc aggatcggcc
    29461 tatcgcgaaa ccaaagatcg tggcttccac cacggcacct tgctgctcaa tgccgacctt
    29521 agccgcctgg caaactatct caatccggat aaaaagaaac tggcggcgaa aggcattacc
    29581 tcagtgcgtt cccgcgtgac caacctcacc gagctgctgc cagggatcac ccatgagcag
    29641 gtttgcgagg ccataaccaa ggcctttttc gcccattatg gcgagcgtgt agaagcggaa
    29701 atcatctccc cggacaaaac gccagacttg ccaaacttcg ccgaaatctt tgcccgtcag
    29761 agtagctggg aatggaactt cggtcaggct ccggcattct cgcatctgct ggatgaacgc
    29821 tttagctggg gcggcgtgga actgcatttc gacgttgaaa aaggccatat cacccgcgcc
    29881 caggtgttta ccgacagcct cacccccgcg ccgctggaag ccctcgccgg gcgactgcaa
    29941 ggctgcctgt accgcgcgga tatgctgcaa caagagtgcg aagcgctgtt ggttgacttc
    30001 ccggaccagg aaaaagagct acgggagttg tcgacgtgga tagcgggggc ggtaaggtaa
    30061 ctcgctgatt aaaataccaa aggaagggaa tatgatcgat ctggaaaacc aggagcggga
    30121 gattatcaat ttaatgttaa gccagcgtat ttcctggcta gccgccgtgc gtatcaggca
    30181 taaattatcg cttgctgaag taagtaaaat gttaggtatc tcgattaatt ctctaaaata
    30241 gatcgaaaag acggaacggt ttagctcaaa catcaaaagc aaaatggcag aaatttatgg
    30301 ttgtccacca gagttgctga tatgcccttc ctggatgacg gctgaacata aatgaataga
    30361 ttcgtgaata gatacttgaa tagattttat tttctatcca tatgaaaaat aatagtaaat
    30421 ctataaatca gttgctattg atgaatagat actaaaaagc cggagcagtc tcccactccg
    30481 gcttcacacg acaatcgcct ttcagcgaaa cacaattact ctttatcgcc cagcagaacg
    30541 gattccagtg cgattttgat catgtcgttg aaggtggtct gacgctcagc ggcagtggtc
    30601 tgctcgtgag tgcggatgtg gtcagacacg gtacagatgg tcagggcttt cgcgccaaat
    30661 tctgcagcga cgccgtagat accagccgct tccatttcca cgccgaggat gccgtatttt
    30721 tccatcacgt cgaacatttc gccgtccgga gagtagaaca ggtcagcgga gaacaggtta
    30781 ccaacgcgag catcaatgcc cagtgcttta gccgcgtcta ccgcgttacg caccatgtca
    30841 aagtcagcga tagcggcaaa gtcatgatct ttaaaacgga tgcggttaac tttggaatcg
    30901 gtgcaggcac ccataccgat aacgacgtcg cgcagtttta cgtgcggcag aactgcgcca
    30961 caggaaccca cgcggataat tttcttcacg ccgaaatcgg tgatcagttc tttggtgtag
    31021 atggagcagg acgggatacc cataccgtga cccattacgg aaattttgcg gcctttgtaa
    31081 gtaccggtga agcccagcat accgcgaacg ttgttcactt cacgggcatc ttcaaggaaa
    31141 gtttcagcaa tatacttcgc acgcagcggg tcgcctggca tcaaaactac gtcagcgaaa
    31201 tcgcccattt ctgcattaat gtgtggggta gccattgttt tatccttatc aacatgtttt
    31261 caccctctcc ctgtgggaga gggccggggt gagggcatca agccgcaccc attatcagaa
    31321 catggctttg ccatattcca tatcagaagt accaaaatat tttgccagag tctggccgat
    31381 atccgcgaag gtttcacggt gacccagtga acccggtttt actttcgggc cgtaaaccag
    31441 taccggaatg tgttcacgcg tgtggtcagt accggtccag gtcggatcac aaccgtggtc
    31501 agcagtgagg atcaggatgt cgtcatcgcg cagcaaagac atcagctccg gcagacggcg
    31561 gtcgaacagc tccagacccg cagcataacc ggcgacgtcg cgacggtggc cccaggaaga
    31621 gtcgaagtca acgaagttgg tgaagacgat ggtgttatca cccgcttctt tcatctcttt
    31681 gatggtggcg tcaaacagcg cgtccaggcc agttgctttc actttcttgg tgataccgca
    31741 gttggcgtag atgtctgcaa ttttaccgac agaaaccacc tgaccgtgtt tttcatcaac
    31801 cagtttctgc agcacggtcg gtgctggcgg ctcaacagcc aggtcgtgac ggttaccggt
    31861 acgctggaag ttaccggctt tgtcaccgat aaacggacga gcgataacac gaccgatgtt
    31921 gtagccgccg ttggtcagct cttcacgggc gatttcgcac agttcgtaga gtttatccag
    31981 gccaaaggtt tcttcgtggc aggcaatctg gaacacggag tcagcggagg tatagaaaat
    32041 cggcttgccg gttttcatgt gctcttcgcc cagctgatcc agaatgaccg taccggaaga
    32101 gtggcagtta ccgaggtaac ccggcagatt agcgcgttcg accagtttat ccagcagctc
    32161 ttgcgggaag ctgttttcgt gatcggagaa gtatccccac tcaaacagaa ccgggacacc
    32221 ggcgatttcc cagtgaccag acggggtatc tttaccggat gacatttcgt gcgcccatgc
    32281 gtacgcgccg ataacttcag cgttgccgtc cattcccgcc ggaatgaaac cggtagaacc
    32341 ttcgtgtgct ttcgccagcc ccagacgggt cagatttggc agattgagcg ggcctttacg
    32401 accgttatca gcttcgcctt tggcacaagc ttctgcgata tgacccaggg tgtcagcccc
    32461 gacgtcacca aagcgttctg catcttctgt agcgccgatg ccgaatgagt ccagcaccat
    32521 aataaatgca cgtttcatat gttctccgta ctcagtgctt caaatttaaa tgatcagatc
    32581 agtataccgt tattcgctga tacggcgata gacagttggt gtgctttccg gtgctttatc
    32641 ggcaagttta attgccgctt tcaccgcttt cgccgcttcc tgccagctgt tttcgtcttt
    32701 cgcgtggata accgccagcg gacgctgacc gtctacttgg tcgcccagac gcgccatatc
    32761 agtaaagccg acgctgtaat cgatggtgtc agatgcctga cgacgaccgc cgcccattgc
    32821 aaccactgcc atccccagcg cgcgggtatc catttcactg acaaaacctt cggtatcagc
    32881 atagactgct ttcgtcagca tcgctgtcgg cagatacttc gcgtagttct caacgaagtc
    32941 ggtcgggcct ttttgtgccg ctaccatacg accaaagact tctgccgctt taccgttgtc
    33001 cagcaccgcc tgcaatttcg cgcgcgcttc ggcgtcatct ttcgccagtt tgccggagat
    33061 cagcatctcc acgcacagcg ccatcgtgac atcaaacaga cgcgggttac gatattcacc
    33121 cgtcaggaac tgcaccgctt cacgaacttc aaccgcgtta cctgcactgg aggccagtac
    33181 ctgattcatg tcggtgagca gcgcggtggt gcgcacgcca gcgccgttag ccacgccaac
    33241 aatcgcttcg gcaagggctt cagagagttc gtaggtcggc ataaacgcgc cgctacccac
    33301 tttcacgtcc atcaccagcg catccagacc ttccgccagt ttcttcgcca ggatcgaggc
    33361 agtgatcagc gggatggagt ccacggttgc ggtaatatca cgggtcgcgt agaaacgttt
    33421 atccgccgga gccagtgagc tggtctgacc gataatcgcc acgccgacgt ctttaataat
    33481 ttcgcggaaa cggttgtcat ccgggaaaat gtcgaagcca gggatggatt ccagtttgtc
    33541 gagcgtaccg ccagtatgac cgaggccgcg accggagatc atcggaatat agccgccgca
    33601 agctgcgacc atcggcccca acatcagcga agtgacatcg ccgacgccgc cggtggaatg
    33661 tttatcaaca atcgggccat tcagatgcag gcttttccag tcgagaacgg ttcctgaatc
    33721 tcgcatcgcc atggtcagcg agacacgctc aggcattgtc atatcgtgga agaaaatggt
    33781 catcgcgagg gcggcaatct gcccttcgga gatagtgttg tcgcgaatgc cgttgataaa
    33841 gaaacgaatt tcttcatcgc tcagcgcatg accatcacgt tttttacgaa taatttcttg
    33901 tgcgagaaac aaggtaacct cccgaggaaa agagtatgag gcggcttttg ccggatgcgt
    33961 ctacgcctta tccggcctac gggtagatac gtctcgtagg cctgataagc gcagcgcatc
    34021 aggcgtaaag catcttgctt agtagctgct ggcgctctta ccgtcaccgt ggcccagcgc
    34081 tttcaacagg cttgccagca ggctggaagc accaaagcgg tagtgacgcg catctgccca
    34141 gtcagcaccg aacagttcat ctgcgatggc gagatatttc tgcgcatctt ccgcagtacg
    34201 cacgccgccc gccggtttga aaccaacggt tttttctacg cccatatcac ggatcacttc
    34261 catcatgatg cgcgcgcttt ccggcgtcgc gttcactgcc actttaccgg tagaggtttt
    34321 gatgaagtca gcacccgctt tgatggagat ttcagacgct ttacggatca gcgcttcgtc
    34381 tttcagttcg ccggtttcga tgatcacttt cagcagtaca ttcgctgccg cgcaagcctc
    34441 tttacaggct ttcaccaggt caaaaccaac ctgctcgtta cccgccatca gcgcgcggta
    34501 cgggaacaca acgtcaactt catcagcacc gtaggcgatt gccgcacggg tttctgccag
    34561 cgcgatttcg atgtcatcgt taccgtgtgg gaagttggtt accgtagcga ttcggatttc
    34621 cggggtgccc tgctctttca gcgttttgcg agcaatcggg ataaagcgag gatagataca
    34681 gatagcggcg gtattgccga ccggagtttt ggtctgatga cacagagcaa ttactttctc
    34741 gtcggtgtcg tcgtcattca gggtggtcag gtccatcaat ttcagtgcac gcaggctgct
    34801 tgctttcaga tcagtcattt cattctcctg gcttgtcgcc aataaaattc accttgcgag
    34861 tttgttagta ttctaacatc tactccgcaa cacacttcga tatacatcac aattaaggaa
    34921 atctacttac aagtttgcat cacagtaatg cgatctggtt caaataattc actttcaaat
    34981 gaatgcgtca gtggtggcaa acgcatcagg atcaaagtga acatcacgaa acttcttaca
    35041 atggcgcatc accttcggca taaaaggaaa agaagatgcc cacttctcat gaaaatgcac
    35101 tgcaacaacg ttgccagcaa attgtcacca gcccagtgct tagcccggag cagaagcgcc
    35161 attttctggc tctggaagca gaaaacaatc tgccttatcc gcagcttcct gccgaagccc
    35221 gccgcgcgct ggatgagggt gtaatctgcg atatgtttga aggtcatgcg ccgtacaaac
    35281 cgcgctatgt cttacccgat tacgcccgtt ttctggcgaa cg
//
LOCUS       DAJVUN010000018        35116 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.018, whole genome shotgun sequence.
ACCESSION   DAJVUN010000018 DAJVUN010000000
VERSION     DAJVUN010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35116
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.018"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..290)
                     /locus_tag="OQQ76_000702"
     CDS             complement(<1..290)
                     /locus_tag="OQQ76_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967297.1"
                     /translation="MKKLPPAPFFRLNRAAELLEIDIDDLLIMAAAESIYLSAYLCGY
                     DGTLHSIASLYRNCSLFPDVKDDCLLLADIITEVEDEKSFKAGVVNHIDCHVL"
     gene            complement(386..1645)
                     /locus_tag="OQQ76_000703"
     CDS             complement(386..1645)
                     /locus_tag="OQQ76_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1967298.1"
                     /translation="MPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFR
                     YKLAGKSRAMLIGSYSELSLSKARETAKELSARVALGYDVAGEKQKHKTEALAKMEAE
                     KNAMRVSELAAEYFERQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLK
                     GIVDRGAPTIATDVLRWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRD
                     ELIQLFKAMRTAKGFSRQNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERS
                     KNGDPIDIPLPSPAVEWLRELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVR
                     AEMPDVPNFTIHDFRRTARTHLAALGVDPVVAERCLNHRIKGVEGIYNRHQYFDERKA
                     ALAQWADLLVALESGKDYNVTPLRRAN"
     gene            complement(1836..2699)
                     /locus_tag="OQQ76_000704"
     CDS             complement(1836..2699)
                     /locus_tag="OQQ76_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HCS1967299.1"
                     /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS
                     LEPVVRERIRSRLTRGKVECTLRYEPDISAQGELILNEKLAKQLVTAANWVKMQSDEG
                     EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL
                     EGVTAEVVKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEEL
                     DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI
                     EQMREQIQNIE"
     gene            2826..3542
                     /gene="rph"
                     /locus_tag="OQQ76_000705"
     CDS             2826..3542
                     /gene="rph"
                     /locus_tag="OQQ76_000705"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HCS1967300.1"
                     /translation="MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE
                     EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV
                     DLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVA
                     AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLL
                     ALARGGIESIVATQKAALAN"
     gene            3608..4249
                     /gene="pyrE"
                     /locus_tag="OQQ76_000706"
     CDS             3608..4249
                     /gene="pyrE"
                     /locus_tag="OQQ76_000706"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HCS1967301.1"
                     /translation="MKPYQRQFIEFALGKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLALLGRFYAEALVDSGLEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEA
                     KDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERG
                     RGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV"
     gene            complement(4286..4882)
                     /gene="slmA"
                     /locus_tag="OQQ76_000707"
     CDS             complement(4286..4882)
                     /gene="slmA"
                     /locus_tag="OQQ76_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000818604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HCS1967302.1"
                     /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS
                     EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERN
                     PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLAS
                     QILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ"
     gene            complement(4989..5447)
                     /gene="dut"
                     /locus_tag="OQQ76_000708"
     CDS             complement(4989..5447)
                     /gene="dut"
                     /locus_tag="OQQ76_000708"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HCS1967303.1"
                     /translation="MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELA
                     PGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVW
                     NRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ"
     gene            complement(5425..6645)
                     /gene="coaBC"
                     /locus_tag="OQQ76_000709"
     CDS             complement(5425..6645)
                     /gene="coaBC"
                     /locus_tag="OQQ76_000709"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HCS1967304.1"
                     /translation="MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAK
                     AFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGM
                     ANDLVSTICLATPAPVAVLPTMNQQMYRAAATQHNLEGLASRGLLIWGPDSGSQACGD
                     IGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGF
                     AIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAA
                     VADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNV
                     EEYARQKRICKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERKELLGQLL
                     LDEIVTRYDEKNRR"
     gene            6817..7485
                     /gene="radC"
                     /locus_tag="OQQ76_000710"
     CDS             6817..7485
                     /gene="radC"
                     /locus_tag="OQQ76_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HCS1967305.1"
                     /translation="MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTL
                     AKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLL
                     SPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
                     KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGENVSFAE
                     RGWI"
     gene            7702..7938
                     /gene="rpmB"
                     /locus_tag="OQQ76_000711"
     CDS             7702..7938
                     /gene="rpmB"
                     /locus_tag="OQQ76_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HCS1967306.1"
                     /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK
                     RFVTLRVSAKGMRVIDKKGIDTVLAELRARGEKY"
     gene            7959..8126
                     /gene="rpmG"
                     /locus_tag="OQQ76_000712"
     CDS             7959..8126
                     /gene="rpmG"
                     /locus_tag="OQQ76_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HCS1967307.1"
                     /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
                     QHVIYKEAKIK"
     gene            8224..9033
                     /gene="mutM"
                     /locus_tag="OQQ76_000713"
     CDS             8224..9033
                     /gene="mutM"
                     /locus_tag="OQQ76_000713"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HCS1967308.1"
                     /translation="MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRL
                     SDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV
                     LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMD
                     NKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLK
                     DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK"
     gene            complement(9072..9551)
                     /gene="coaD"
                     /locus_tag="OQQ76_000714"
     CDS             complement(9072..9551)
                     /gene="coaD"
                     /locus_tag="OQQ76_000714"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HCS1967309.1"
                     /translation="MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP
                     MFTLEERVALAQQATAHLGNVEVVGFSGLMANFARNQHATVLIRGLRAVADFEYEMQL
                     AHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA"
     gene            complement(9559..10836)
                     /gene="waaA"
                     /locus_tag="OQQ76_000715"
     CDS             complement(9559..10836)
                     /gene="waaA"
                     /locus_tag="OQQ76_000715"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HCS1967310.1"
                     /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRH
                     PLKPGGIMLHSVSVGETLAVIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQ
                     HVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSA
                     AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLA
                     AKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQVLLQQFPNLLLILVPRHPERFPD
                     AINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH
                     NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRS
                     FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH"
     gene            11249..12307
                     /gene="rfaQ"
                     /locus_tag="OQQ76_000716"
     CDS             11249..12307
                     /gene="rfaQ"
                     /locus_tag="OQQ76_000716"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptosyltransferase
                     RfaQ"
                     /protein_id="HCS1967311.1"
                     /translation="MDKLFRRILLIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ
                     DTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIVNLTDQWMVAI
                     LVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLGVDSLVKQT
                     TMSYPPASWKRMRRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEV
                     VLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVTFPELGALIDHAQLFIGVDSAPAHI
                     AAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPAAD
                     VIAAVDKLLPSSTTGTSL"
     gene            12304..13428
                     /locus_tag="OQQ76_000717"
     CDS             12304..13428
                     /locus_tag="OQQ76_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HCS1967312.1"
                     /translation="MIVAFCLYKYFPFGGLQRDFMRIAQTVAARGHHVRVYTQSWEGE
                     YPDVFELIKVPVKSHTNHGRNAEYFAWVQKHLREHPVDKVVGFNKMPGLDVYYAADVC
                     YAEKVAQEKGFFYHLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAE
                     RFHILPPGIYPDRKYSQQPANSREIFRKKNGITEQQYLLLQVGSDFTRKGVDRSIEAL
                     ASLPDSLRHNTLLYVVGQDKPRKFEALAEKRGVRSNVHFFSGRNDVSELMAAADLLLH
                     PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAIAEPFRQETLNEILRKA
                     LTQSSLRQAWAENARHYADTQDLYSLPEKAADIITGGLDG"
     gene            13421..14218
                     /gene="rfaP"
                     /locus_tag="OQQ76_000718"
     CDS             13421..14218
                     /gene="rfaP"
                     /locus_tag="OQQ76_000718"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HCS1967313.1"
                     /translation="MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAG
                     KSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGI
                     NPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
                     RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGL
                     TQRDIWRFMKVYFAAPLKDILKQEQGLLSQAEAKATKIRERTIRKSL"
     gene            14234..15250
                     /gene="waaO"
                     /locus_tag="OQQ76_000719"
                     /gene_synonym="rfaI"
     CDS             14234..15250
                     /gene="waaO"
                     /locus_tag="OQQ76_000719"
                     /gene_synonym="rfaI"
                     /EC_number="2.4.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     3-alpha-galactosyltransferase"
                     /protein_id="HCS1967314.1"
                     /translation="MSAHYFNPQEMINKTIIFDERPAASVASSFHVAYGIDKNFLFGC
                     GVSITSVLLHNNDVSFVFHVFIDDIPEADIQRLAQLAKSYRTCIQIHLVNCERLKALP
                     TTKNWSIAMYFRFVIADYFIDQQDKILYLDADIACQGNLKPLITMELANNVAAVVTER
                     DANWWSLRGQSLQCNELEKGYFNSGVLLINTLAWAQESVSAKAMSMLADKAIVSRFTY
                     MDQDILNLILLGKVKFIDAKYNTQFSLNYELKKSFVCPINDETVLIHYVGPTKPWHYW
                     AGYPSAQPFIKAKEASPWKNEPLMRPVNSNYARYCAKHNFKQNKPINGIMNYIYYFYL
                     KIIK"
     gene            15267..16262
                     /locus_tag="OQQ76_000720"
     CDS             15267..16262
                     /locus_tag="OQQ76_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide 1,2-glucosyltransferase"
                     /protein_id="HCS1967315.1"
                     /translation="MNEFIKERFSYLADNKKENAPELNVSYGIDKNFLYGAGVSISSV
                     LINNSDINFVFHVFTDYVDDDYLKSFNETAKQFNTSIIVYLIDPKYFADLPTSQFWSY
                     ATYFRVLSFEYLSESISTLLYLDADVVCKGSLKPLTEIIFKDEFAAVIPDNDSTQAAC
                     AKRLNIPEMNGRYFNAGVIYVNLKKWHEANLTPYLLKLLRGETKYGSLKYLDQDALNI
                     AFNMNNIYLAKDFDTIYTLKNELYDRSHRKYQQTITDKTVLIHYTGITKPWHSWAGYP
                     SASYFNIAREQSPWKKYPLKEARTVAEMQKQYKHLFAHGEYIKGITSLIKYKLKK"
     gene            16272..16964
                     /gene="rfaY"
                     /locus_tag="OQQ76_000721"
     CDS             16272..16964
                     /gene="rfaY"
                     /locus_tag="OQQ76_000721"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II) kinase RfaY"
                     /protein_id="HCS1967316.1"
                     /translation="MITSIRYRGFSFYYKDNDNKYKEIFDEILAYNFKTVKVLCNIDD
                     TKVSLIDTKYGRYVFKVFAPKTKRNERFLKSFVKGDYYQNLIVETDRVISAGLTFPND
                     FYFLAGRKIFNYASVFIMLIEYVEGVELNDMPIIPENVKAEIKASMEKLHALNMLSGD
                     PHRGNFIVSKDGVRIIDLSGKSCTAERKARDRLAMERHLGIANEIKDYGYYSVIYRTK
                     LRKFIKKLKGKA"
     gene            16990..18015
                     /locus_tag="OQQ76_000722"
     CDS             16990..18015
                     /locus_tag="OQQ76_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactose--(galactosyl) LPS
                     alpha1,2-galactosyltransferase"
                     /protein_id="HCS1967317.1"
                     /translation="MDLLAESITEVAVSGEIANTDRVLNIAYGIDRNFLFGAAVSMQS
                     VVMHNPDLAVKFHLFTDYIDEDYLQRVNAFTSKNANVEVIIYKVSNAFIDIFPSLKQW
                     SYATFFRLVAFQYLSETIENLLYIDADVICKGSLAGLLDINFDEDKFAAVIKDVPFMQ
                     EKPAKRLAIEGLPGNYFNAGVVYLQLEAWAKNDFMNKAIAMLASDPQHTKYKCLDQDI
                     LNILFFGHCNFISGDYDCFYGIDYELKNKSDEDYKKTITDDTKLIHYVGVTKPWNDWT
                     NYPCQKYFNEAYQASCWNDVAFIPATNEKQYQVKYQHAKKNGDTFNAFIYFIKFKLNK
                     YKRKLFG"
     gene            18100..19083
                     /locus_tag="OQQ76_000723"
     CDS             18100..19083
                     /locus_tag="OQQ76_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCS1967318.1"
                     /translation="MSNDYPLVSIIIPTYNSSDYITETLTKLEKQTYPNFEIVIVNDG
                     SKDNTSNVLREYGLTHSRLIIINKENGGVSSARNTGIRKAQGQFICFMDDDDEIDPNY
                     LLKMYTRQHETGGDAIYCGLYGHYIKDGVTYSPINTEFNEGSLLFDFFYKKVRFHIGC
                     LFIRKQLLEENNLFFDEDLRLGEDLDFIYRLLITCDMYAVPYYMYKHNYRENSLMNSC
                     RTITHYRHESFAHERIYSSVMQLYKGNRKEEIHTLLSQNRAYHKTRYLWNVLLNGDFK
                     LLNQLVESNEKELRDCNLPGKRDKRRAKILASKNYILWRMVRLVNRKKNKR"
     gene            19129..20382
                     /locus_tag="OQQ76_000724"
     CDS             19129..20382
                     /locus_tag="OQQ76_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012311869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HCS1967319.1"
                     /translation="MLFCWNEINSGIKSLILILCIFSLMTLSLWDDVATKFLHAAGII
                     SALYFLATPKKTITNNPTLLIFISLCLLGIVNIIWYSHYKVSGSVYTNAYRGPMETGK
                     IALCSAFIFLVLFAKNEMRTKIKFGKLILFASLATQLLFFAHAMWQHFYLNVDRVALS
                     ASHATTAGYIILFPSLLASILILKSDFRHKTTLYTINFMLSLCAVIVTETRAAILVFP
                     FFALILIVMDSYINKRINYKLYCFIAIALLAGVFSFKDTLLMRMNDLNNDLVNYSHDN
                     TRTSVGARLAMYEVGLKTYSPIGQSLEKRAEKIHELEEKEPRLSGALPFVDSHLHNDL
                     IDTLSTRGIPGVVLTILAFSAILIYALRTAKEPYILILLFSLLVVGLSDVILFSKPVP
                     TAVFVTIILLCAYFKAQSDQYLLDK"
     gene            complement(20452..21441)
                     /gene="rfaC"
                     /locus_tag="OQQ76_000725"
     CDS             complement(20452..21441)
                     /gene="rfaC"
                     /locus_tag="OQQ76_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HCS1967320.1"
                     /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQI
                     PSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAAL
                     VTRLAHGVKHGLDWQTAREPLASLFYNCKHHIAKQQHAVERTRELFAKSLGYSKPQTQ
                     GDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWG
                     APHEEERAKRLAEGFDYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNI
                     TVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKRFIEENAENAENAAMI"
     gene            complement(21445..22491)
                     /gene="rfaF"
                     /locus_tag="OQQ76_000726"
     CDS             complement(21445..22491)
                     /gene="rfaF"
                     /locus_tag="OQQ76_000726"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HCS1967321.1"
                     /translation="MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL
                     LSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGI
                     PHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQL
                     QVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVL
                     FGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVA
                     AALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQR
                     VLEELNTLLLQEEA"
     gene            complement(22501..23433)
                     /gene="rfaD"
                     /locus_tag="OQQ76_000727"
     CDS             complement(22501..23433)
                     /gene="rfaD"
                     /locus_tag="OQQ76_000727"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HCS1967322.1"
                     /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD
                     LDIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH
                     YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS
                     QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA
                     DVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT
                     QADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA"
     gene            23647..24843
                     /gene="kbl"
                     /locus_tag="OQQ76_000728"
     CDS             23647..24843
                     /gene="kbl"
                     /locus_tag="OQQ76_000728"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HCS1967323.1"
                     /translation="MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV
                     INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM
                     EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQE
                     LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV
                     GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS
                     LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD
                     AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK
                     QLGVIA"
     gene            24853..25878
                     /gene="tdh"
                     /locus_tag="OQQ76_000729"
     CDS             24853..25878
                     /gene="tdh"
                     /locus_tag="OQQ76_000729"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HCS1967324.1"
                     /translation="MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHI
                     YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG
                     RTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF
                     DLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKE
                     NLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV
                     IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG
                     KVILSWD"
     gene            26117..27151
                     /gene="waaH"
                     /locus_tag="OQQ76_000730"
     CDS             26117..27151
                     /gene="waaH"
                     /locus_tag="OQQ76_000730"
                     /EC_number="2.4.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronate:LPS(HepIII) glycosyltransferase"
                     /protein_id="HCS1967325.1"
                     /translation="MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDG
                     STDNSVEIAKHYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTM
                     YETLMTMALEDDLDVAQCNADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSR
                     RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLH
                     NTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKITIYPEFHQQITYEALRVCH
                     AVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHH
                     RITRSAFNLR"
     gene            complement(27138..28097)
                     /locus_tag="OQQ76_000731"
     CDS             complement(27138..28097)
                     /locus_tag="OQQ76_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312519.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HCS1967326.1"
                     /translation="MFPFRRNVLAFAALLALSSPVLAGKLAIVIDDFGYRPHNENQVL
                     AMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDE
                     IERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
                     MCAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPLTVRVL
                     QQMVYNLPPDITLVKASSLLNEPQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPV
                     YANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKFNASAN"
     gene            complement(28101..29384)
                     /gene="envC"
                     /locus_tag="OQQ76_000732"
     CDS             complement(28101..29384)
                     /gene="envC"
                     /locus_tag="OQQ76_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HCS1967327.1"
                     /translation="MRGKAINTMTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADE
                     RDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNK
                     QIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQCGQRLQAYF
                     GYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKK
                     TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDRQKEA
                     TRKGTTYKPTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIG
                     ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQ
                     PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR"
     gene            complement(29394..30938)
                     /gene="gpmM"
                     /locus_tag="OQQ76_000733"
                     /gene_synonym="pgmI"
     CDS             complement(29394..30938)
                     /gene="gpmM"
                     /locus_tag="OQQ76_000733"
                     /gene_synonym="pgmI"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HCS1967328.1"
                     /translation="MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPH
                     TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGA
                     VDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR
                     SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADT
                     AVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVN
                     ADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISET
                     EKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKY
                     DTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQ
                     MRDPATGQAHTAHTNLPVPLIYVGDKNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGK
                     PLFIVE"
     gene            31183..31614
                     /locus_tag="OQQ76_000734"
     CDS             31183..31614
                     /locus_tag="OQQ76_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCS1967329.1"
                     /translation="MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGE
                     ATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDG
                     SGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK"
     gene            31756..32007
                     /gene="grxC"
                     /locus_tag="OQQ76_000735"
     CDS             31756..32007
                     /gene="grxC"
                     /locus_tag="OQQ76_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HCS1967330.1"
                     /translation="MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM
                     IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK"
     gene            32070..32537
                     /gene="secB"
                     /locus_tag="OQQ76_000736"
     CDS             32070..32537
                     /gene="secB"
                     /locus_tag="OQQ76_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015369180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HCS1967331.1"
                     /translation="MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDL
                     DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYC
                     PNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA"
     gene            32537..33556
                     /gene="gpsA"
                     /locus_tag="OQQ76_000737"
     CDS             32537..33556
                     /gene="gpsA"
                     /locus_tag="OQQ76_000737"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HCS1967332.1"
                     /translation="MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATL
                     ERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPD
                     ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD
                     QTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
                     ITRGLAEMSRLGAALGAEPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSA
                     QEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKD
                     ERSSH"
     gene            33636..34457
                     /gene="cysE"
                     /locus_tag="OQQ76_000738"
     CDS             33636..34457
                     /gene="cysE"
                     /locus_tag="OQQ76_000738"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HCS1967333.1"
                     /translation="MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSA
                     LSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL
                     LYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHAT
                     GIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA
                     KIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI"
     gene            complement(34510..34983)
                     /gene="trmL"
                     /locus_tag="OQQ76_000739"
     CDS             complement(34510..34983)
                     /gene="trmL"
                     /locus_tag="OQQ76_000739"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HCS1967334.1"
                     /translation="MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL
                     RRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE
                     TRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRD"
BASE COUNT         8796 a         8327 c         8749 g         9244 t
ORIGIN      
        1 agcacatggc aatctatatg atttacaacg cctgccttaa agcttttttc gtcctctact
       61 tcagtgatta tgtcggcaag taacaagcag tcgtctttga cgtctgggaa taaagagcaa
      121 ttgcgataaa gactcgcgat gctatgtaat gtgccgtcgt agccgcaaag gtacgcgctc
      181 aaatatatag attctgccgc cgccataatc aaaagatcat caatatctat ttctaataat
      241 tcggctgctc tgttaagcct gaaaaaaggg gcgggtggta attttttcat tgcgtcacct
      301 tttacgctgc gccttatttt gtgattgagc caggcggtaa ggcttcccgc ttttcgcccc
      361 gtcgagctag gctcaatcta ttcagttagt tcgcccttct gagaggcgtt acgttgtagt
      421 cttttccgct ttccagtgcc actagcagat cagcccactg tgccagtgct gctttacgct
      481 catcaaaata ctgatggcgg ttataaatcc cctctacgcc cttaatgcga tgattgaggc
      541 atcgttccgc cacaacagga tcaacaccca acgctgctaa atgagtacgt gcggtgcgtc
      601 gaaagtcgtg aatcgtgaaa ttaggcacat ccggcatttc ggcgcgaacc ttagccagtg
      661 ctacgggtaa agtgctttcc tgaatatgtg ggatcattct gttttgcatc ttcctggccg
      721 gaagcaccca tgcgctatta catgaaaagg tgtgtagctc tctcaaccat tcaacggctg
      781 gggaaggtag aggtatatca atagggtctc cgtttttgct gcgttcttcc ggcaaatgcc
      841 ataccgcacc atctaaatca aactcttccc atcgtgcggc gcataattcc attttgcgga
      901 cgcataacgc taacagtaat ttgaacgtga tttcgttctg gcgactgaat cccttagccg
      961 tgcgcatggc tttgaatagc tggattaact catcgcgggt taaccagcgg tcacgggcag
     1021 cttctttccc tccggcgtct gccacctcaa aggctgaaca ggggttaatc tctagcgcgt
     1081 gccgtttgat tccgtagtcg aatatgcggc gcgtccatct cagcacgtcc gttgctatgg
     1141 tcggcgctcc acggtcaaca atacctttca gcatgtcatc gatatggcgc ggtttcacgt
     1201 cctctacctt catgctgcca atgcaggggt ttatatcttt gtcgatacgg cggcggagta
     1261 tatcggggtg cttccagcgc gggaggatct gacgctcaaa gtattcagcg gcaagctctg
     1321 aaacgcgcat agcgttcttc tctgcttcca tcttcgccag tgcttcggtt ttgtgcttct
     1381 gcttctctcc tgcaacgtca tagcccagcg caacgcgagc cgatagctct ttggctgtct
     1441 ctctggcctt tgatagtgat agctcgctat acgaaccaat tagcatggcg cgggacttcc
     1501 ctgcgagttt atagcggaat ctccatgtgg gggttttgtc ggcttcacgg taacgtaggt
     1561 ataaaccgtt accgtctgcc cgcccctcga atcgctctcc gctcttaatc catgcgcgga
     1621 tctgcatgtc tgttagtttt ggcattttgc gaatatccaa actttgaata gggggtgtac
     1681 ccaaagcaat gtacccaaac ctcattgggt acacctttgt gtacaccata atcatgcgct
     1741 ttgttgcgtc tttatgatag cccatgataa caaaaaagcc cgctgggttg cgggcttggt
     1801 gtgatttatg cgtcgtccta aatgttgctg atagcttact cgatattctg aatctgctcg
     1861 cgcatctgct caatcaacac tttcagctca atcgcggagt ttgtcacttc ggcattgata
     1921 gacttcgacg caagagtgtt cgactcgcgg ttgaattcct gcatcataaa gtccagacga
     1981 cgaccaacgg cttctttttt cttcagaatg ttgtaggtct ctttgacatg cgcttccagg
     2041 cggtccagtt cttcggcaac gtcaattcgt tgtgccagca gaaccagctc ctgctccaga
     2101 cggttgtttt ccaactgaac ctgagcatct tccagcttcg cgaccagacg ctcacgctgc
     2161 cattgcagga tttccggcat atgggcgcgg actttgacca cttcggcggt gacgccttcc
     2221 agacgctgct cgatcaatgc tttcagtgcc tgaccttcgg tttcgcgcgc gacaataaag
     2281 tcgtccagcg taccatccag cgccgcgaga atttcagcgg caatggcgtc aagatcctgc
     2341 tcctgggctg ccatcacgcc cggccagcgt agaatatcaa ccgggttgat ttccccttcg
     2401 tcactctgca tttttaccca gttcgcggca gttaccagct gtttagccag tttttcgttg
     2461 aggatcagct caccttgcgc gctaatatct ggctcatagc gcagggtaca ttccacttta
     2521 ccgcgcgtca ggcgagaacg aatacgctcg cgaacgacag gttcaaggct acggaactgc
     2581 tccggcagac gaaagtaagt ttccagataa cgctggttta ccgagcgcat ttcccaggtt
     2641 gcgctccccc attcaccctt gatttcacgc cgggcgtagg cggtcatact gcggatcata
     2701 gacgttcctg tttataaaag gagaggtgga aggattatag ccatcgatgc cttgtcagga
     2761 taggaataac cgccggaagt ccgtataatg cgcagccaca tttgtttcaa gccggagatt
     2821 tcaatatgcg tccagcaggc cgtagcaata atcaggtgcg tcccgttacc ctgactcgta
     2881 actatacaaa acatgcagaa ggctcggtgc tggtcgaatt tggcgatacc aaagtgttgt
     2941 gtaccgcctc tattgaagaa ggcgtgccgc gcttcctgaa aggtcagggc cagggctgga
     3001 tcaccgcaga gtacggcatg ctgccacgtt ctacccacac ccgtaacgct cgtgaagcgg
     3061 cgaaaggtaa gcagggtgga cgcacaatgg aaatccagcg tctgatcgcc cgtgctcttc
     3121 gcgcggcagt agatttgaaa gcgctgggtg agttcaccat tacgctggac tgcgacgtgc
     3181 ttcaggctga tggtggcacg cgtaccgcgt cgattacggg tgcctgcgtg gcgctggcag
     3241 atgcgctaca gaagctggtg gaaaacggca agctgaaaac caacccgatg aaagggatgg
     3301 tagccgcagt ttctgtcgga attgtgaacg gcgaagcggt ttgcgatctg gaatacgttg
     3361 aagactctgc cgcagagacc gacatgaacg tagtgatgac cgaagacggg cgcatcattg
     3421 aagtgcaggg gacggcagaa ggcgagccgt tcacccatga agagctactc accttgttgg
     3481 ctctggcccg agggggaatc gaatccattg tagcgacgca gaaggcggcg ctggcaaact
     3541 gatttttaag gcgactgatg agtcgccttt tttttgtctg tagaaaagta agatgaggag
     3601 cgaaggcatg aaaccatatc agcgccagtt tattgaattt gcgcttggca agcaggtgtt
     3661 aaagtttggc gagtttacgt tgaagtccgg gcgcaaaagc ccctatttct tcaacgccgg
     3721 gctgtttaat accgggcgcg atctggcact gttaggccgt ttttacgctg aagcgttggt
     3781 ggattccggc cttgagttcg atctgctgtt tggccctgct tacaaaggga tcccgattgc
     3841 caccactacc gccgtggcgc tggcggagca tcatgacctt gacctgccgt actgctttaa
     3901 ccgcaaagag gcaaaagacc acggtgaagg cggcaatctg gttggtagcg cgttacaagg
     3961 acgcgtaatg ctggtagatg atgtgatcac cgccggaacg gcgattcgcg aatcgatgga
     4021 gattattcag gctaatggcg cgacgcttgc tggcgtgttg atttcgcttg atcgtcagga
     4081 acgggggcgc ggcgagattt cggcgattca ggaagttgag cgtgattaca actgcaaagt
     4141 gatctctatc atcaccctga aagacctgat tgcttacttg gaagagaagc cggaaatggc
     4201 ggaacatctg gcggcggtta aggcctatcg cgaagagttt ggcgtttaaa gaaactcgcc
     4261 ggatgaaaag tcatccggcg tcatattact gcaactgtgc cgcaattagc ggccagcggg
     4321 cgtcaaaatc atccgtcggg cggtatttaa attcgctgcg gacaaaacgt gacagcatac
     4381 cttcacagaa ggccaggatc tggcttgcca gcagggtttc atcggtggtg taaccttcac
     4441 cctcacgcat tctcttttca cgcaatacct gacgcagctg cgcttcaata cgctcgaaca
     4501 gctggttgat gcgcccttgc aggcgatcct gttcaaacat tagcgcatga ccagtgagga
     4561 tgcgggtcag gccaggatta cgctcaccaa aaccgagaag cagcaacaca atcagacgca
     4621 ggcgcgctgt ggtgtctttc tcatctttca gaatcaggtt gatgcgagta atcaggctat
     4681 cttcgataaa ctcaatcagg ctatcgaaca tgcgggtctt actggggaag tggcgataca
     4741 gtgccgcttc ggaaacgccg acagaggcgg ccagttttgc cgtcgtgata cgttggcttc
     4801 catcgctgga ttccagcatc agcgccagag actgaagtat ttcctcgcga cggttccttt
     4861 tcgcagtttg tttttctgcc atgttacaaa atacccctga aaataagcac ttgccaggcg
     4921 gcacccacgc tatgaccgca aacgaaatgt ttgcggctat gttatgacgt tattcggatg
     4981 cgtatgtgtt actgacgacc agagtgacca aagccgcctt caccgcggtc ggtggcgtcg
     5041 aaatcttcca ccagattaaa ttcagcctgt actaccggaa caaaaatcat ctgggcgatg
     5101 cgttcgccag gttgaatggt gaagctgtcc tgaccacggt tccacacgga aatcatcaac
     5161 tggccctgat agtcggaatc gatcaatcct accaggttac caagcacgat accgtgctta
     5221 tgtcccaatc cggagcgcgg cagcatcatt gccgccagtg aaggatcggc aatatgaatc
     5281 gccagcccgg tcggaaccag cgtagtgtca cccggagcca gttctacggc gtcgtcgaga
     5341 caggcacgca ggtcaagtcc ggcagagcca gaggtggcat aagtcgggag cggaaattcc
     5401 ttcccaacgc gcgggtccag aatcttaacg tcgatttttt tcatcataac gggtcacgat
     5461 ctcgtcgagt aatagttggc caaggagctc tttgcgctca agcggtaaga ctttatctcc
     5521 gtcctgccag aaaaggtgta atgcgttgtt gtcgctgtta aatccttgag ttggctggga
     5581 aacatcgttc gcgcagatca gatcaaggtt tttacagata cgtttttgcc gggcgtattc
     5641 ttccacatta tttgtttcgg cggcaaatcc aacgacgtag ggtcgatggt cttttagtgc
     5701 ggcaacgcct gcgacgatat cggggttttt aaccattttt attgttaatt catcaccctg
     5761 cgtggcctgc tttttgattt tttctggggc cacggtagct gcgcgataat ccgccacggc
     5821 ggcgcagccg ataaaaatat tttgctgctg tacagaagca ttcacggcgg cttccatttc
     5881 cagcgcggtc atcacatcaa cacgtttaac aaacggtggc gtcggtagtg aaaccggacc
     5941 tgataccagc gtgacgttcg cgccacgacg ggcagcggcg gcggcgatag caaaacccat
     6001 cttgccggag ctgtgattag agatataacg cacgggatcg agcggttcac gcgtcggacc
     6061 ggcggtaatc ataatgttca gatgtttcag gtcgttgacg ggcgaaaaat gcgccaccgc
     6121 catatccaca atggttaacg gatcgagcat tcgcccagga ccgatatcac cacaagcctg
     6181 actgccactg tctggccccc agatgagcaa accacgggaa gcaagcccct ctaaattatg
     6241 ctgcgtggca gcggcacggt acatctgctg gttcatggtg gggagcacgg ctacaggcgc
     6301 aggtgtagcc agacaaatcg tcgataccag gtcattcgcc attccggcag caacacgggc
     6361 aatcaaatct gccgtggcag gggcgagaat cactaaatca gcccatttac ccagctcaat
     6421 atggcccata gcggcttcgg ctgccgggtc cagcaaactg tcggaaacgg gataaccaga
     6481 aaccgcctgc aagctaagtg gggtgataaa ggcttttgcc gcttcggtca tggctacgcg
     6541 gacgtcggcc ccgcgatcgc gcaaacgacg caccagttca ggggttttat aggcagcaat
     6601 accgccgcta acgccgagaa cgattttttt accggccagg ctcatgatga tttttcctgt
     6661 tgggtgacac cagaagttgg cgattttatc acaatacttt tgttgtcgtg ccttcacctg
     6721 agaatcactt tgcgaggcgc tttccaggat tgaaaactgg ccgtcgattt aacggaacgg
     6781 ctatgacagg atgcgagcac cacaaaggag gtgaaggtga aaaacaattc acagctgttg
     6841 atgccgcgcg aaaaaatgct gaagtttggt attagcgcct taacggatgt cgagctgctg
     6901 gcgctatttc tgcgtaccgg aacgcgcggt aaagatgtat taaccctggc aaaagagatg
     6961 ctggagaatt tcggctctct ttatggcttg ttaacctctg aatatgaaca atttagtggc
     7021 gttcatggaa ttggcgtggc gaaatttgcc cagttaaagg ggattgctga actggcgcgg
     7081 cgttactaca acgtgcggat gcgtgaagaa agccctttac tcagcccgga gatgacgcgg
     7141 gaatttttac aaagccagct tacgggtgag gagcgggaga tctttatggt gatctttctc
     7201 gactcacaac accgggttat aacgcatagc cgtctttttt ccggcacgct aaaccatgtt
     7261 gaagtccatc ctcgggaaat tatccgcgaa gcgataaaaa taaacgcctc ggcgctgatc
     7321 cttgcacata atcacccttc gggttgtgct gaacccagta aagcggataa actcattact
     7381 gaacggataa taaagagttg tcagttcatg gatttacgcg tgctcgacca tatcgtgatt
     7441 gggcgtggag agaatgtttc ttttgccgaa cgcggctgga tttaacccgc tatgcgcgat
     7501 ccttcgggat ctttgtctgt tcgggacttg agcacatcgc tgagtcagcg tatactacgc
     7561 cacctttgag aatctcgggt ttggcatttg ggcctggcaa tcgagagttc acatagaact
     7621 gcgatgactg ggctgtaaag cctgacgagg cgccaatacc ccatacgaag ctcgagctaa
     7681 tttgattttt ggagaataga catgtcccga gtctgccaag ttactggcaa gcgtccggtg
     7741 accggtaaca accgttccca cgcactgaac gcgactaaac gccgtttcct gccgaacctg
     7801 cactctcacc gtttctgggt tgagagcgag aagcgttttg tcaccctgcg cgtatctgct
     7861 aaaggtatgc gtgtaatcga taaaaaaggc atcgatacag ttctggctga actgcgtgcc
     7921 cgtggcgaaa agtactaagt acttagagga aataaatcat ggctaaaggt attcgtgaga
     7981 aaatcaagct ggtttcttct gctggtactg gtcacttcta taccactacg aagaacaaac
     8041 gtactaagcc ggaaaaactg gaactgaaaa aattcgatcc agttgttcgc cagcacgtga
     8101 tctacaaaga agcgaaaatc aaataattct cgctttgatg taacaaaaaa cctcgctccg
     8161 gcggggtttt ttgttatctg cttgccccca tattgactgc atctgttcat tcctggagat
     8221 gctatgcctg aattacccga agttgaaacc agccgccgcg gcatagaacc gcatctcgtt
     8281 ggtgcaacca ttcttcatgc agtggtgcgc aacggacgct tgcgctggcc ggtttcagaa
     8341 gagatctacc gtttaagcga ccaaccagtg cttagcgtgc agcggcgggc taaatatctg
     8401 ctgctggagc tgcctgaggg ctggattatc attcatttag ggatgtctgg cagcctgcgc
     8461 atccttccag aagaacttcc ccctgaaaag catgaccatg tggatttggt gatgagcaac
     8521 ggcaaagtgc tgcgctacac cgatccgcgc cgctttggtg cctggctgtg gaccaaagag
     8581 ctggaagggc ataatgtgct ggcccatctt ggaccggagc cgcttagcga cgatttcaat
     8641 ggtgagtatc tgcatcagaa gtgcgcgaag aaaaaaacgg cgattaaacc gtggctgatg
     8701 gataacaagc tggtggtagg ggtagggaat atctatgcca gcgaatcact gtttgcggcg
     8761 gggatccatc cggatcggct ggcgtcatca ctgtcgctgg cagagtgtga attgttagct
     8821 cgggtgatta aagcggtgtt gctgcgttcg attgagcagg gtggtacaac gctgaaagat
     8881 tttctgcaaa gtgatggtaa accgggctat ttcgctcagg aattgcaggt ttacgggcga
     8941 aaaggtgagc cgtgtcgggt gtgcggtacg ccgattgtgg cgactaaaca tgcgcagcgg
     9001 gcaacgtttt attgtcggca gtgccagaag taattcatgc gcgccggatc gcataccatc
     9061 cggcataaac gctacgctaa cttcgccatc agcgcctgat ggacattctc cggcaggaaa
     9121 tgggtgacat cgccctgatg gcgcgccacc tctttcacca acgatgaaga gataaacgac
     9181 cactctttcg acggcatcag aaacacactt tccagttccg gcattaagtg gcgattcata
     9241 tgcgccagct gcatttcata ttcaaaatcc gccaccgcac gcaggccacg aatcagcacc
     9301 gtagcgtgtt gattacgggc gaagttcgcc atcaaaccac taaacccaac tacttccacg
     9361 ttccccagat gcgcggttgc ctgctgtgcc agcgccacac gctcttccag ggtaaacatc
     9421 ggttttttac tggggctggc ggcaatcgcc agaataacgt gatcgaacat ttgcgtggcg
     9481 cgcgtcacga tatcgatatg accattggta atgggatcga aagtacccgg ataaatcgcc
     9541 cgtttttgca taacaacctc aatgcgtttt cggtggcagg taaggttcca gcagttgaag
     9601 caggcgctgt agcgcgccct ggttttgata cagtacttca acggcatgac ggccatagaa
     9661 actacggtaa tcggcgtcgg tgagtaaaga ggaaacctct tttgcaagcg tagtggcatc
     9721 ggtaacggta atcagcccgc ttgcctgctc cagccgcgcg caaatgtctt taaaattaaa
     9781 agtatgcggc cccatcaata ccggaatagc gtgtgcggca gcttccagcg gattatgccc
     9841 accacgttca accagtgaac cgccaacaaa ggcgagatcg gcaatgccgt acagtaacat
     9901 caactcgccc atcgtatcgc caaccacaac ctgcgtgctg gtggagggga cttcccctga
     9961 agagcgtgtg atatagctta gtccagcctg gcggacaagg ttaatcgcat ccgggaagcg
    10021 ttctggatga cggggtacca ggatgagcaa taaattcggg aattgctgta acaatacctg
    10081 atgtgcggcg atcaccacac tctcttcacc ttcgtgagtg ctggtggcaa tccataccgg
    10141 gcggtgtggt gcccactggc ggcgcagcgt cacggcttta gcagccaact gcggcgttac
    10201 agaaatatcg aatttcaggc taccggtaac ggttacctgg ttattttttg cgcccagcgc
    10261 cacaaaacgt gcaccatctt cttcattttg ggcggcaatc agcgtaatac gacgcagcaa
    10321 gcgacggacg aatttaccca gtttggcata acctgcggcc gagcgggcag agagtcgcgc
    10381 gttcgcgatc accagcggaa ttttacgttt atgtagcgcc gcaatcaggt taggccatag
    10441 ttcggtttcc ataatcaaca ccagtttagg gtcgacttta ttcaggaaac gattaagtgc
    10501 atcgggcagg tcatacggca gataaacgtg ctgaacatcc ttcccgaaag ccgattgtac
    10561 gcgctccgaa ccggttggcg tcatggttgt aacggtaatc ggtaaatcag gataacgatg
    10621 acgcagcgcg cgcaccaacg ggatcaccgc cagagtttca ccgacggaga cggagtgcag
    10681 cataatgccg cctggtttta gcggatggcg gtaaaaaccg taacgttcac cccagcgttt
    10741 tcgataggcc ggagccttac gtccgcgcac ccagagccgt atccagatca gcggctgaat
    10801 aaggtagaga agggcggtgt aaagcaattc gagcatagta aatagctgac ttatggatgt
    10861 gctggggatt ctatgtattt agctgtggct ttaccattac ttttcccgtt tttgacttaa
    10921 atagcaattt acccgccaat tcttgctgaa catctatact ttttttgtat ttttatgcga
    10981 ttcattgatt tctgctgtac gtgcaggaag gaatcgcaga gcaacagtga aagaatatgg
    11041 ttgctaatga ttttatttga ttgatttctt tattgaaaat caacaatgtg cttaaaaatc
    11101 attcgggtcg gattgccgcg aaagaagtga tacactagcg cgtcaatatc agtgcggtat
    11161 cagtattcag gtagctgttg agcctggggc ggtagcgtgc tttttctgct tcaccttaat
    11221 cggataatct caacaaaaag agttacttgt ggataagcta tttcgaagaa ttttgctcat
    11281 taagatgcgt tttcatgggg atatgttatt aactactccc gtcattagtt cgctgaaaaa
    11341 aaattaccct gacgcaaaaa tcgatgtgct gctttatcag gacaccatcc cgatcctgtc
    11401 tgaaaatcca gagattaacg cgctctacgg cataaaaaat aaaaaagcaa aagcctcaga
    11461 aaaaattgcc aacttttttc atctcatcaa ggtattacgt gccaataagt atgaccttat
    11521 cgtcaatctc accgatcaat ggatggttgc tatactggtt cgcttattaa atgcccgtgt
    11581 gaaaatttcc caggattatc atcatcggca gtctgctttt tggcgtaaaa gtttcaccca
    11641 tttggtgccg ttgcagggtg gaaatgtggt ggaaagtaac ttatccgtgc tgaccccatt
    11701 gggagttgat tcgttggtga agcagacaac catgagttac ccgcctgcaa gctggaaacg
    11761 tatgcgtcgc gaacttgatc acgctggtgt tggacaaaat tatgtggtta tccaacctac
    11821 ggcgcggcaa atcttcaaat gctgggacaa cgccaagttt tccgctgtga ttgatgcctt
    11881 acatgctcgt ggttatgaag ttgttctgac gtccggccca gataaagacg atctggcctg
    11941 cgtcaatgaa attgcgcagg gatgccagac gccaccagta acggcgctgg ctggaaaggt
    12001 gaccttcccg gaacttggtg cgttaatcga tcatgcgcag ctgtttattg gcgttgattc
    12061 cgcaccggcg catattgccg ctgcagttaa tacgccgctg atatcgctgt ttggtgcgac
    12121 agaccatatt ttctggcgtc cctggtcaaa taacatgatt caattctggg cgggagatta
    12181 ccgggaaatg ccaacgcgcg atcagcgtga ccgaaatgag atgtatcttt cggttattcc
    12241 ggcggcagat gtcattgctg ctgtcgataa attactgccc tcctccacga caggtacgtc
    12301 gttatgatcg ttgctttttg tttatataaa tattttccct ttggcggttt gcagcgcgat
    12361 tttatgcgta ttgctcagac agtcgccgcc cgaggtcatc atgttcgggt ttatacccag
    12421 tcgtgggaag gcgaataccc tgatgtattt gaactgatca aagtgccggt taaatcgcat
    12481 accaatcacg ggcgcaatgc ggagtatttt gcctgggtgc aaaaacattt acgcgaacat
    12541 cccgtcgata aagtcgttgg attcaacaaa atgccggggc tggacgttta ttatgccgct
    12601 gatgtttgtt atgccgagaa agtcgcgcag gaaaaaggct ttttctatca cctgacgtca
    12661 cgttatcgcc attatgccgc ctttgagcgg gcaaccttcg aacagggaaa gccgacacag
    12721 ctgctgatgc tgacagataa gcaaatcgcc gatttccaga aacattatca gactgaagcg
    12781 gagcgttttc atattctgcc accggggatt tatcctgatc gtaaatatag ccagcagcca
    12841 gctaatagcc gtgaaatctt ccgtaagaag aatggaataa ccgaacaaca atatttattg
    12901 ttgcaggtcg gttcagactt cacgcgtaaa ggtgtcgatc gttccattga agcacttgct
    12961 tcgttaccgg attcgctgcg ccacaacaca ttgctatatg ttgttggaca ggataaaccg
    13021 cgaaaatttg aggcgctggc agaaaaacgc ggcgtgcgca gtaatgttca cttcttctcg
    13081 gggcgcaacg atgtctcgga attaatggcg gcggcggatt tattactgca tcctgcctac
    13141 caggaagcag cgggaattgt gctactggaa gcgattactg caggattacc ggtactaaca
    13201 acagccgttt gtggctatgc gcattatatt gtcgacgcca attgcggcga ggctattgct
    13261 gagccattcc gccaggaaac attgaatgag attttacgca aagcgttaac gcaatcttca
    13321 ttgcgccagg cctgggcgga aaatgcgcga cattatgctg atacacaaga tttatacagt
    13381 ctgccagaga aagcggcgga tatcataacg ggtggtctgg atggttgaac ttaaagagcc
    13441 gtttgccacg ttatggcgcg gtaaagatcc ttttgaggaa gttaaaacct tgcagggtga
    13501 ggtttttcgt gaactggaaa ctcgccgcac tctgcgattt gaaatggcgg gcaaaagcta
    13561 ttttctcaaa tggcatcgcg gcacgaccct gaaagagata atcaaaaatt tactctcatt
    13621 gcggatgcca gtattaggcg cagaccgcga atggagtgcg attcatcgac tgcgggatgt
    13681 cggcgttgat actatgtatg gggtggcatt tggcgaaaaa ggtattaatc cgctgagcag
    13741 aacctcgttt attattaccg aagatctgac cccaaccatc agtctggaag attactgtgc
    13801 tgactgggcg actaacccac cagatgttcg cgtaaagcgt atgcttatta agcgtgtcgc
    13861 gacgatggtg cgcgatatgc atgctgcggg cattaaccac cgtgactgtt atatctgtca
    13921 tttcctgctg cacttgcctt tttccggtaa ggaagaggag ttaaaaattt cggtaattga
    13981 cctacaccgg gcgcagcttc gcacgcgcgt tccacgtcgt tggcgcgata aagatcttat
    14041 agggctttat ttttcttcaa tgaatattgg cctgactcag cgggatatct ggcggtttat
    14101 gaaagtgtat tttgccgccc cgcttaaaga cattctcaag caggaacaag gactgctgtc
    14161 gcaagcagaa gcaaaagcca caaaaatcag ggaaagaacg attcgaaaat cgttgtaatt
    14221 tccggagaga aatatgagtg cccactattt taatccacaa gagatgatca ataagacaat
    14281 catcttcgat gaaaggccag cggcgtcagt agcatcatca ttccatgttg cttatggcat
    14341 tgataaaaac tttctttttg gttgtggtgt ttcaatcacg tcagttttgt tacataacaa
    14401 cgacgtgagt tttgttttcc acgtttttat tgatgatatc cctgaagccg atatccagcg
    14461 tttagcccaa ttggcgaaaa gctatcgtac ctgtatccag atccatctag taaattgtga
    14521 acggcttaag gcattaccga cgaccaaaaa ttggtctatt gccatgtatt tccgttttgt
    14581 aattgcagat tactttattg atcaacaaga taagatcctt tacctggatg ctgatatcgc
    14641 ctgtcaggga aacttaaagc cgctgataac aatggagctt gccaataacg ttgctgctgt
    14701 tgttactgaa cgcgatgcta actggtggtc gttacggggt caaagtctgc agtgtaatga
    14761 acttgaaaag ggctacttta attcaggtgt cctgttaatt aatacgctag cgtgggcgca
    14821 ggagtccgtt tctgctaaag cgatgtcgat gcttgctgat aaagccatcg tttcccgttt
    14881 cacctatatg gatcaagata tccttaatct tatcctgtta gggaaagtta aattcattga
    14941 tgctaaatac aatacgcaat ttagtttaaa ttatgaatta aaaaaatcat ttgtttgtcc
    15001 aattaatgat gaaaccgtat taattcatta tgtcggcccg acaaaaccct ggcattactg
    15061 ggccggttat ccaagtgcgc aaccttttat caaagccaaa gaagcatcgc cctggaaaaa
    15121 tgaaccgtta atgcggccag ttaactcaaa ctatgctcgt tattgcgcca agcataattt
    15181 taaacaaaat aaaccaatta acgggataat gaattatatt tattattttt atttaaagat
    15241 aataaaatga aattgagaaa agttaaatga atgaatttat aaaagaacgg ttttcgtatt
    15301 tagcagataa taaaaaagaa aacgccccag agctaaatgt ttcctacggt atcgataaga
    15361 attttttgta tggtgctggc gtttcaattt cttccgtttt gattaataat tcagatatta
    15421 attttgtctt tcatgttttc actgattatg tggatgatga ttatttaaag tcatttaatg
    15481 aaacagcaaa acaatttaat acctcaatta ttgtatattt aattgacccc aaatactttg
    15541 ctgatctgcc gacgtcacag ttttggtcat acgcgacata cttcagggta ttgtcttttg
    15601 aatatctgag tgaaagtatt tccacactgc tgtatctgga tgccgatgtt gtttgtaaag
    15661 gaagcctgaa acctctcaca gaaattatat ttaaagatga gtttgctgcg gtcattcctg
    15721 acaatgatag tactcaggcg gcatgtgcaa aacgcctcaa cattcccgaa atgaatggac
    15781 gttatttcaa tgcaggcgtt atctatgtca atcttaaaaa atggcatgaa gcaaatttga
    15841 caccgtattt actcaaactt ttacgagggg aaactaaata tggctctctt aaatatttag
    15901 atcaggatgc gttgaatatc gcatttaata tgaataatat ctaccttgcg aaggattttg
    15961 atactattta taccctgaaa aacgaacttt atgatcgtag tcatcgaaag tatcagcaaa
    16021 ccattaccga taaaacagtg ttgattcact atacagggat aactaaacca tggcatagct
    16081 gggctggata tccgtctgca tcatacttta atatcgcgcg tgaacaatct ccctggaaga
    16141 aatatcctct taaagaggcg cggactgttg cagaaatgca gaaacaatat aagcatctgt
    16201 ttgcccatgg tgagtatata aaaggcataa cttcattaat taagtacaag cttaagaaat
    16261 aaattactct tatgattaca agtatacgtt atcgcggctt ctcattttat tacaaagata
    16321 atgataataa atataaagaa atctttgatg aaatactggc ctataatttt aaaacagtaa
    16381 aagtattatg taatattgat gataccaaag tatcgttgat tgatacgaaa tatggtcgct
    16441 atgtttttaa agtctttgct ccgaaaacga aaaggaatga acgtttttta aaatcttttg
    16501 taaaaggtga ctactatcag aatttgatcg ttgaaaccga tcgtgtcata agtgcaggtc
    16561 ttacttttcc taatgatttt tattttctgg ctgggcgtaa aattttcaac tatgccagtg
    16621 tttttatcat gcttatcgag tatgtcgagg gcgtagagct caatgatatg ccgattattc
    16681 cagaaaatgt taaagcagaa attaaggctt caatggaaaa attgcatgcc ttaaatatgc
    16741 tatcgggcga cccacaccgg ggtaacttta tcgttagtaa agatggtgtc aggataattg
    16801 acctatccgg taaaagctgt acggcagagc gtaaagctcg tgatcgtctg gccatggaac
    16861 gtcacctggg tattgccaac gaaataaaag attatggcta ctattcagta atctacagaa
    16921 ccaaactacg caaatttatt aaaaaattaa aaggcaaagc gtaaaccaca cagtcaaaac
    16981 ggaaccaaca tggatttatt agctgagagt attactgaag tcgctgtctc tggggaaatt
    17041 gctaacaccg atcgtgtgtt aaatatcgct tacggtattg accgtaactt tttatttggt
    17101 gcggcagtat ctatgcaatc agttgttatg cataacccgg accttgcggt taagtttcat
    17161 ctctttaccg actacattga tgaagattat ctacaacgtg ttaatgcttt taccagcaaa
    17221 aatgctaacg ttgaagtaat aatttataaa gtctccaatg cctttattga tatcttcccc
    17281 agcctgaaac agtggtctta tgcaacattc ttccgtttag ttgcgttcca gtatttgagt
    17341 gaaactattg aaaatctgtt atatatcgat gctgatgtca tctgtaaagg ctcattagct
    17401 ggattgcttg atattaattt tgatgaggat aagttcgcag ctgttattaa agatgtgcct
    17461 tttatgcagg aaaaaccagc gaagcgtctg gctatagagg gacttccagg gaattatttc
    17521 aacgccggtg tagtatatct gcagcttgaa gcatgggcga aaaatgattt tatgaataaa
    17581 gccattgcta tgctggcaag tgacccgcag cacacgaagt ataaatgcct tgatcaggat
    17641 attttaaata ttctgttctt tggtcattgt aattttatta gcggcgatta tgattgcttt
    17701 tatggcattg actatgagtt aaaaaataaa agcgatgaag attataaaaa gaccattacc
    17761 gatgatacta agctgattca ttatgttggc gtaacgaagc cctggaacga ctggacgaat
    17821 tatccctgcc agaagtattt taatgaggct tatcaggctt cttgctggaa tgatgtggcg
    17881 tttattccag ccacgaatga aaagcagtat caagtgaaat atcaacatgc aaagaaaaat
    17941 ggtgatacgt ttaacgcttt tatttacttc attaaattta aattaaataa gtataaaaga
    18001 aaactatttg gataataata aaaatcatgg atgtctgagt tacaataata attaaggatg
    18061 agtactatca tattttatta gttcaggcaa gagaacacga tgagcaatga ttacccttta
    18121 gtatccataa taataccgac gtataattca tctgattaca ttactgaaac tctaacgaaa
    18181 ttagaaaaac aaacttaccc aaattttgaa attgttattg ttaatgatgg ttctaaagat
    18241 aacacatcaa acgttttgag agagtatggg ttaacccact ctcgattaat tattatcaat
    18301 aaagaaaatg gcggtgtttc gtctgccagg aatacaggta tccgcaaggc gcaaggacag
    18361 tttatatgtt ttatggatga tgatgatgag atagatccta actatctgct gaagatgtat
    18421 accagacaac atgagacggg aggggatgcg atttattgtg ggctttatgg ccattatata
    18481 aaagatggtg ttacttactc acctataaat acagagttta atgaaggatc tttacttttc
    18541 gacttttttt ataaaaaggt tagattccat atagggtgct tgtttataag aaaacaactt
    18601 ctggaagaga ataatctttt ttttgatgaa gatttacgac taggagaaga tcttgatttt
    18661 atctatcgac tgctaattac atgcgatatg tatgcggttc catattatat gtataagcat
    18721 aactatagag aaaattcctt aatgaactca tgtagaacca tcactcatta tcgacatgag
    18781 tcatttgcgc acgaaagaat ctactcttct gtgatgcagt tatacaaagg taaccggaaa
    18841 gaagaaattc atacattatt gagtcaaaat agagcttatc ataaaactcg ttatttatgg
    18901 aatgttctac ttaatggtga ttttaaacta ttgaatcaat tagttgaaag caatgaaaaa
    18961 gaattaagag attgtaatct tcctggcaag agagataaga gacgagcaaa aatattagca
    19021 tcaaaaaatt atattctctg gaggatggta agactggtaa atagaaaaaa gaataaacgt
    19081 tagatcttgc attaaataac ccatcctcgt agcataggtt gaaattatat gttgttttgt
    19141 tggaatgaaa ttaattctgg tataaagtct ttaattctca tattatgtat tttttcttta
    19201 atgactttgt ctttatggga tgatgttgca acaaagtttc ttcatgcagc tggaattata
    19261 tctgcattgt attttcttgc gacaccaaaa aaaacaataa ctaataatcc tactttgtta
    19321 attttcatct cattatgtct tttgggtatc gtaaatatca tctggtattc acattataaa
    19381 gtttcaggct ctgtttatac caatgcatat cgtggcccaa tggaaacagg aaaaattgcc
    19441 ttgtgtagcg cttttatttt cttagttctt tttgctaaaa atgagatgag aacaaaaata
    19501 aaatttggga aactaattct gttcgcatcc ctggcaacgc agttactttt ttttgcgcat
    19561 gccatgtggc aacatttcta tttaaacgtc gaccgtgttg cattatcagc ttcccacgct
    19621 acaacagcag gctacatcat cctttttcct tctttactgg catcaattct cattttaaaa
    19681 tccgacttta gacataaaac aacattatat acaattaact tcatgcttag cttatgtgct
    19741 gtcatagtaa ctgagacgcg tgcagccata ttagtgtttc cattctttgc gttaatatta
    19801 atcgtaatgg atagttatat taataagcga attaattata agttatattg ttttattgcg
    19861 attgcattat tagcaggtgt attttctttt aaagatacat tgcttatgag aatgaatgac
    19921 ttaaataacg atttagttaa ttattcgcat gataacacca gaacttcagt cggtgcccgt
    19981 ctggcaatgt atgaagttgg cttaaaaaca tattctccaa taggacaatc actggaaaaa
    20041 cgtgcagaaa aaatacatga gctagaagaa aaagagccta gattgagtgg cgctttaccc
    20101 tttgtagatt ctcatttgca taacgatctc atagatacgt tatcaacgcg tggtattcct
    20161 ggagttgtat taacaatttt agcattttca gcaatactca tatatgcctt aagaactgct
    20221 aaagaacctt atattttaat cttgcttttt tcactactgg tagtaggcct aagtgatgta
    20281 atactctttt ctaaaccggt tccgactgct gtgtttgtca ccataatatt gctttgtgct
    20341 tattttaaag cacaatcaga ccaatattta ttagataagt aatgaatata tgaaataaaa
    20401 tcagcaagga ggctgatttt atttcaaaat tatctattaa ggggttgtaa tttaaatcat
    20461 agcagcgttt tcagcgtttt cagcgttttc ttcaatgaat cgcttaacag catttgctgt
    20521 caattgagac aactcattcc ccggagccct acaaaccatc tgattcttcc catacccacc
    20581 aattaatccc ggatcggttg gtccataaac cgtgatattg ggtctatcca gtgccgccgt
    20641 taaatggctt aaccccgtat ccaccgacac tacaaattta gccccggcca gcacgcgggc
    20701 aacgccttcc agactcatct tcggcaatac ttcaacataa tcaaatcctt ccgccagtcg
    20761 tttcgcccgt tcttcctcat gcggcgcgcc ccacggaagt ttaatccgta ttcctgaatc
    20821 agccagtaaa ccaatcaatt ctcgccagtg ttcttccggc cagtgtttat catcacgggt
    20881 cgtcgcatga agaaatacgg catattcgcc agcatctgta ggcaggttcg tcagaaaatg
    20941 ctgtgcgata gcataatcgc cctgggtttg cggtttgcta tagcccaaac ttttggcaaa
    21001 cagttcgcgg gtgcgttcta cggcgtgctg ctgttttgca atatgatgct tacaattgta
    21061 aaacaggctg gctaaaggtt cgcgagcggt ttgccagtcc aatccatgct ttacgccatg
    21121 cgccagacgt gtcaccagtg ccgcgctttt taccagcccc tgagcgtcga taactgcgtc
    21181 atagttctct gcttgtagcg cttcacgaaa cgctttgcgt tcagctttta tgggggccga
    21241 gaaccaggct ttacgccagc gacgtattgc cacaggaata actcgctcaa cggcagcgtg
    21301 ccaggaagga atctgtgcga acccttcttc caccacccag tcaaacttaa tccctgggat
    21361 tgcctgctgg gcatcagtga gtgcgggcaa cgtatggaga acatcgccca tcgacgatgt
    21421 tttaacgatc aaaacccgca tccgtcaggc ttcctcttgt aacaatagcg tgttgagttc
    21481 ttccagtacg cgctggggag taatgtcgat caagctctgg tgataaccct ccgcagcgtc
    21541 acctttacgc actttgtgat agccggtaat cagacggatc acgcgcgctt tatgggatag
    21601 cggcggtgtg aagtccgggc tacttggacc atacagggca accagcggac gattgagcgc
    21661 cgccgcaacg tgcatcaggc cagaatcgtt agtgacaatg gctttacagg ctgcaatcag
    21721 gataaccgct tgatcaagct gtgtttcccc cgccaggttc cgacaccatg cctgctgctc
    21781 ggtattcaaa gcggcaagaa tctcattgcc cgcttcatga tctttcgcag agccaaacag
    21841 aaccacctga taaccttcat caatcagctg ctttgccagt tccgcatagt ggtagtgtgg
    21901 ccagcgtttt gccggaccaa actccgcacc cgggcaaaag ccaatcatcg gacgttctga
    21961 tgaaagcgaa aattgattac aggtatatga tttttcacct tcgctcacct gcaactgcgg
    22021 ccataacaat ggctgcggca gatcttgtgc ggtacgcata atgcctttgt cataggccag
    22081 cgcgacatag cgttccacca ttagcggcca ggcttcttta tcgagcacgc gtacatcgtt
    22141 gagtaaaccg tagcgcatct cgccgcgcca gccggtgcga tgaggaatac ccgcgaagaa
    22201 aggcactaat gcagatttga aggagttggg taagacgtag gcgcggtcgt agcgcttttc
    22261 acgcaggcta tgacccagtt tgcggcgttc gccgatttcc agcgctccgt gaccgagagg
    22321 catagggata gcttcgttaa cttccggcat ccgcgataat aatggacggc accatgccgg
    22381 tgccatcaca tcgattatcg cctggggata gcgcgcctgg agcgtgcgat agagactttg
    22441 cgacatcatc atgtcgccaa cccaagacgg gccgatcacc agtattttca tgcagagctc
    22501 ttatgcgtcg cgattcagcc aggccatgta ttccgttaca ccttcagcaa cggttttgaa
    22561 cggtttgtcg taacccgccg cgcgcagatt tgtcagatct gcctgagtga acgcctggta
    22621 gcggcctttc agcttatccg ggaacggaat gtattcgatc tggcctttct tgtgataagc
    22681 cagagtagca tctgctacgg cctggaagga ttccgcacga ccagtaccga ggttgaagat
    22741 accggaaacg ccattttcca ggaaccacag gtttacatct gccacgtcgc ccacatagac
    22801 gaagtcacgt ttgaagttct cgctaccttc aaacagcttc ggtgattcac cgttgttaag
    22861 ctgagtgttg agatggaaag cgacgctcgc catgctgcct ttatggcctt cacgcggtcc
    22921 ataaacgttg aaatagcgga agccaacaat ctgcgagttc gcttcaggca ggatttggcg
    22981 aacatattca tcaaacagga attttgagta accgtagacg ttcaacggtt tttcgtactc
    23041 gcgggattca ataaagtcgg aggtgcgtcc gccgtaggtg gctgcggaag aagcgtacag
    23101 gaacgggatt tcgcgctcca ggcagtagtg cagcagctcc ttggagtatt gatagttgtt
    23161 atccatcata tacttgccgt cccactcggt ggtggaagag catgcgcctt cgtggaaaat
    23221 cgcttcgaca tcgccgaact cttcgccagc cataatctgg atcaggaagt cttccttatc
    23281 catatagtcc gcgatatcca gatccaccag gttcacaaac ttggtgccgt ctttcaggtt
    23341 gtccaccacc agaatatcgg tgatgccttt atcattcagg gccttaacga tgttgctgcc
    23401 gataaagccc gcgccgccgg taacgatgat cataactgta accttcgaat tatggagtca
    23461 gagacaatct cagacacgaa tacttctatc atatcactat acggcgttgg cttcagccat
    23521 tcgccaaaag tgagattgat ggacgttatt tatcctgaat tttgcagaag tgttaacgcg
    23581 tcatctcgtc gcgacgtata agtttgggta atatgtgctg gaatttgccc tgtctggaga
    23641 atcgcaatgc gtggagaatt ttatcagcag ttaaccaacg atctggaaac cgcacgggcg
    23701 gaagggttgt ttaaagaaga gcgcattatt acgtctgcgc agcaagcaga tatcactgtg
    23761 gctgatggaa gccacgtcat taacttttgt gccaacaact atctcgggct ggcgaatcat
    23821 ccggatctga ttgcggcagc aaaggcggga atggattctc acggtttcgg catggcttcg
    23881 gtgcgtttta tttgcggcac tcaggacagc cataaagagc ttgaacaaaa actggcggca
    23941 ttcctgggga tggaagatgc gattctctac tcttcctgct ttgatgctaa cggtggactg
    24001 tttgaaacgc tgctgggtgc ggaagacgcc attatctccg acgcactgaa ccacgcgtct
    24061 attattgatg gtgtgcgtct gtgcaaagct aaacgctatc gctatgccaa caacgatatg
    24121 caggagctgg aagcacgtct gaaagaagcg cgtgaagccg gtgcgcgtca tgtgctgatt
    24181 gccaccgatg gtgtgttctc aatggacggc gtgattgcca acctgaaagg cgtttgcgat
    24241 ctggcagata aatacgatgc cttggtgatg gtggatgact cccacgcggt cggttttgtc
    24301 ggtgaaaatg gtcgtggttc ccatgaatac tgcgatgtga tgggccgggt cgatattatc
    24361 accggtacgc ttggtaaagc gctgggcggg gcttctggtg gttataccgc ggcgcgcaaa
    24421 gaggtggttg agtggctgcg ccagcgttct cgtccgtacc tgttctccaa ctcgctggca
    24481 ccggccattg ttgccgcgtc catcaaagta ctggagatgg tcgaagcggg cagcgaactg
    24541 cgtgaccgtc tgtgggcgaa cgcgcgtcag ttccgtgagc aaatgtcggc ggcgggcttt
    24601 accctggcgg gagccgatca cgccattatt ccggtcatgc ttggtgatgc ggtagtggcg
    24661 cagaaatttg cccgagagct gcaaaaagag ggcatttacg tcaccggttt cttctatccg
    24721 gtcgttccga aaggtcaggc gcgtattcgt acccagatgt ctgcggcgca tacccctgag
    24781 caaattacgc gtgcagtaga agcattcacg cgtattggta aacaactggg cgttatcgcc
    24841 tgaggatgtg agatgaaagc gttatccaaa ctgaaagcgg aagagggcat ctggatgacc
    24901 gacgtccctg taccggaact cgggcataac gatctgctga ttaaaatccg taaaacagcc
    24961 atctgcggga ctgacgttca catctataac tgggatgagt ggtcgcaaaa aaccatcccg
    25021 gtgccgatgg tcgtaggcca tgaatatgtc ggtgaagtgg taggtattgg tcaggaagtg
    25081 aaaggcttca aaatcggcga tcgcgtttct ggcgaaggcc atatcacctg cggtcactgt
    25141 cgcaactgtc gtggcggtcg tacccatctg tgccgcaaca cgatcggcgt cggcgttaac
    25201 cgtccgggct gcttcgccga atatctggtg atcccggcgt tcaacgcctt caaaatccca
    25261 gacaatatct ccgacgacct ggcttccatt tttgatccct tcggtaacgc cgtgcatacc
    25321 gcgctgtcgt tcgatctggt tggcgaggat gtgctggtct ctggtgcagg tccgataggt
    25381 attatggctg cggcggtggc gaaacacgtt ggtgcacgca atgtggtgat cactgatgtt
    25441 aacgaatacc gccttgagct ggcgcgcaaa atgggtatca cccgtgcggt taacgtcgcg
    25501 aaagaaaacc ttaatgatgt gatggctgaa ctgggcatga ccgaaggctt tgatgtcggt
    25561 ctggaaatgt ccggtgcgcc gccagcgttt cgtaccatgc ttgacaccat gaaccacggc
    25621 ggccgtattg cgatgctggg tattccgccg tctgatatgt ctatcgactg gaccaaagtg
    25681 atctttaaag gcttgttcat taaaggtatt tacggtcgtg agatgtttga aacctggtac
    25741 aagatggcgg cgctgattca gtctggcctc gatctctcgc cgatcattac ccatcgtttc
    25801 tctatcgatg atttccagaa gggctttgac gctatgcgtt cgggccagtc cgggaaagta
    25861 attctgagct gggattaaca cgaacaaggg ctggtattcc agccctttta tctggggata
    25921 atctgttgaa tatgtaaaat cctgtcagtg taataaagag ttcgtaattg cgctgatctc
    25981 ttatatagct gttctcatta tctctctacc ctgaagtgac tctctcacct gtaaaaataa
    26041 tatctcacag gcttaatagt ttcttaatac aaagcctgta aaacgtcagg ataacttcag
    26101 aggtcgtcgg taatttatga tgaacagcac caataaactt agtgttatta ttccgttata
    26161 taatgcgggc gatgatttcc gcacttgtat ggaatcttta attacgcaaa cctggactgc
    26221 tctggaaatc attattatta acgatggttc aacggataat tctgttgaaa tagcaaagca
    26281 ttacgcagaa aactatccgc acgttcgttt gttgcatcag gcgaatgctg gcgcatcggt
    26341 agcgcgtaat cgtgggatcg aggtggcgac gggcaaatat gtcgcttttg tcgatgctga
    26401 cgatgaggtc tatcccacca tgtacgaaac gctgatgacc atggcgttag aggacgacct
    26461 cgacgtggcg cagtgcaacg ctgactggtc ttttcgtgaa acgggagaaa cctggcaatc
    26521 catccccagc gatcgccttc gctcaaccgg cgtattaacc ggcccggact ggctgcggat
    26581 ggggctttct tcgcgccgtt ggactcacgt tgtctggatg ggggtttatc gccgtgatgt
    26641 tattgttaaa aataacatta aatttattgc cggattacat catcaggata ttgtctggac
    26701 aacagaattc atgtttaacg cgctgcgtgc gcgatatacc gagcaatcat tatataaata
    26761 ttatctgcat aatacgtcag tgagtcggtt gcatagacaa gggaataaaa accttaatta
    26821 tcaacgtcac tatattaaga ttacccgcct gctggagaaa ttaaatcgaa attatgctga
    26881 caaaattacg atttatccgg aatttcatca gcaaataact tacgaagcat tgcgtgtttg
    26941 ccatgcggtg cgcaaagagc cggatattct tacccgccaa cggatgattg ccgagatatt
    27001 tacttccggt atgtataagc gcctgattac caatgtgcgc agcgtgaagg tcggttacca
    27061 ggcgttactg tggtctttcc gcttatggca atggcgcgac aaaacgcggt cgcaccatcg
    27121 cattacgcgt agcgccttta atttgcgcta gcgttaaact tcgccgcttc gggctgtttg
    27181 ccccagcctt gccactgatg ctggaagtaa acgatcagcg tgctctggct gatgctttcg
    27241 cttaatactt caaagaagcg attagcataa acaggttcta tcggtttctt cggtttgcac
    27301 agcttcacgc cacggaacgg attacgcggt gcatcaggca cagcgttttt cggcggtgta
    27361 gaagtatcaa cctgcggttc attcagcaag ctgctggctt tcaccagcgt aatgtctggc
    27421 ggcaggttat aaaccatctg ttgtagcacg cgtaccgtta aagggtgagg atgcccaatg
    27481 gcaatggttg aaccgttgcg acgcgccaga tcaattgcgc gattaaattg cacacggatg
    27541 tccgcttcgt tctgcgaatc gtcgaggaac accttccgtt taataacctt cacgccagta
    27601 ccttgcgcgg cgcacatcgc ctgggtatta ccgatggtta cgctgtcgag gaagtaaaga
    27661 ttgtaacgct ccagtgcctg catcactttc tgcataccaa acaggttaga ggtcatcttg
    27721 ctacccatgt ggttgttgat ccccacggca tagggcacgt tattgaccgc actacgaata
    27781 atgcgctcaa tttcgtcgct gctcatctcc gggcgcagcg tatttttctc cagcggctgt
    27841 ttactcagtg gtgccatcgg gagatgaatc aacacttcgt gcccgctgtt atgcgctttg
    27901 gtcgccatct ctctggcgtg cggtgaatcg ggtaatacag cgacggagat agcggagggc
    27961 atcgccagca cctggttttc gttgtgcggg cgatacccaa aatcatcaat gacgatggca
    28021 agtttgccag caagtacggg ggaggagagc gccaacagag cggcaaatgc aagaacgtta
    28081 cgacgaaatg gaaacaaaac ttatcttccc aaccacggct gtggattgac cgcctgaccc
    28141 tggcggcgaa tttcgaaata gagtgaaggc cgaccctgac cgccactgct gcccaccagt
    28201 gcaattggct ggcccgcgcg aacctgcgaa ccaacgctca ccagtgcgct ctgattatag
    28261 ccgtaaagac tcatgtcgcc tttaccgtgc tcaaccacca ccaccagacc gtaaccttgc
    28321 agccagtcag ccagaatcac tcgaccgtcg gcaattgctt taacttcagt accttcagag
    28381 gcaccgataa ccatcccttt ccagcgtaat tcaccctgta gctgctcgcc atagcgatgc
    28441 agcgtcggcc cgcgaaccgg ccagaatgcc tgaccacgcg gcgcacccag accaccagtt
    28501 cgggacatca gcgatttttc gctttcggtc ggtttgtagg tggtgccttt gcgcgtcgct
    28561 tctttctggc ggtcgcgaac cgcctgggcc tcacgcgctt ctcgttcagc acgcgctttc
    28621 gccgcggctt ccgcacgggc aatgctgtta cgcagacggg attcgttggc acgcagttca
    28681 cttagctgct gctgaccttg ctggatggaa gattccagcc ccgccagcgt ctttttacgc
    28741 tcgttcagag cctgagtcag tttcgcctgt tgggcgcgct gttcatataa cagcgtttgt
    28801 tgctcgcttt gtttctcttc cagttcagca cgctgcatgg cgacttcttc acgcgtttgc
    28861 ttcaactggg caatggtttc ttgtcgcgcc tggttgagat agccgaaata agcctgtaaa
    28921 cgctgtccac actggctttc ttcaccgctg agaattagct gaataccggt atgctcgccc
    28981 tgacggaatg cggcatccag ttgtgcggcg aggctgcgct cctgggcggc tttttgctgc
    29041 tccagtttgg caatcgacgc gttcatctca tcaatctgtt tattgagttg attgagcgtg
    29101 ttttgcgttt cgcgcagctt acgggtggct tcagagatcg cttcttcctg ctttttcaat
    29161 tgtgcgagca ggcttgcgcg ttgttgttgc ttttggcgta ccgcgcgctc ttttgcagcg
    29221 atatcggcct gaatagattt gagttggtca cgctcatccg cgtgggcgga aaaggcgcac
    29281 aacaatacgc cagcgctaag aacgctggcg tagatgatgg gcctgattgc aaacctgcgc
    29341 ggtttcacgg cccgtgtcat ggtattaatc gcctttcccc tcatggggag ggattattcc
    29401 acgatgaaca gcggcttacc agtcatctct tgcgggattt ccatacccat cagcgacaac
    29461 atggtcggcg cgatgtcaga aagtttgccg cctgcaaccg ctttcacgtt cttatcacca
    29521 acgtaaatca gcggaactgg caggttggtg tgtgccgtgt gtgcctgacc cgttgccgga
    29581 tcgcgcatct gttcagcgtt accgtggtca gcggtgatca gcagttgtcc acccacggac
    29641 tcaaccgctt tcgcgacttc ttccacgcag tgatccagtg cttcaaccgc tttaaccgcc
    29701 gcttccatca ccccggtgtg acctaccatg tcgccattcg gatagttaca gataatggtg
    29761 tcgtatttgc cgctcttgat ggccgcaacc agtttttcgg tcagctctgc ggagctcatt
    29821 tccggttgca gatcgtaggt agccactttc ggtgagttga tcagaatgcg atcttcgcct
    29881 ttgaatgact cttctacgcc accgttgaag aagaaagtaa cgtgggcata tttttcggtt
    29941 tcggaaatac gcaactgagt tttgtcgttt ttcgccatcc actcgccgaa ggtgttaacc
    30001 agggaagcgg gtgggtaagc aaccgcagtt ttgatgtcag cggcgtattc ggtcagcatc
    30061 acgaaatcga cgttaaccac tttcttacgc gcgaagccgt cgaaatctgc gtttacgaat
    30121 gcacgagtga tttcgcgcgc gcggtcagca cggaagttca tgaaaatcag cgcatcgccg
    30181 tcttccattg ccgcatctgg ctgaccttct gcacgaataa cggtcgcttt cacgaactcg
    30241 tcgttttcgt cgcgagcata agctgcctgc aaaccagcaa cggcagtatc ggcctggaac
    30301 tcaccctgcg ccagagtcag caggtcatag gctttttcaa cgcgatccca acggttatcg
    30361 cggtccatcg cgtagtaacg accaatgatg gacgctacgc ggcctttacc cagcgcagca
    30421 aatttctctt caaatttttt cagcgaggat tcagcactgc gcggcggggt gtcgcgaccg
    30481 tcaaggaatg cgtgcaggta gattttttct gcgccgcgtt cagctgccag ttctaccatc
    30541 gccatgatgt gatcttcgtg gctgtgtacg ccgcctgcgg agagcagacc cataatgtgt
    30601 actgctttac ctgcgttttt cgctttatct accgcgccag tcagcactgg attagcaaag
    30661 aaagcgcgat ctttgatttc aacgtccaga cgagtcaggt cctgatacac gatgcggccg
    30721 gcacccaggt taacgtggcc tacttcggag ttacccatct gacggtcagg cagaccgact
    30781 tccagaccgg aagcgtcgat cagggtatgc ggacgattgg cccacagtgc atccattacc
    30841 ggggttttag cactaaaaat ggcgttatcc tgctgttctt cacgatagcc atagccatcc
    30901 agaatcacca gtaccatagg ttttttagaa accgacattg cgacaacctc atactcaaga
    30961 gtcaaaattt gcgtaatttt actacagctg aatcgataaa atagcctctg aagatcaaaa
    31021 tatacgaccg ctcgcggcaa gccgatgcca gatttgcgct tttttttcgt cgtgccccgc
    31081 aaaattgcat tccagttaac gcgctggctg tatttgccgc accgcgcagg tatactcctt
    31141 tcctggtttt tttaatcact acgtcgggag ttgttacccc ccatgcaaga aattatgcaa
    31201 tttgttggcc gtcatcccat actgagtatc gcctggatcg cgttactggt ggcggttctt
    31261 gtgactacgt ttaagagcct gacctcgaaa gtgaaggtga ttactcgtgg tgaagctacg
    31321 cgtctgatca acaaagaaga cgctgtggtt gtggatttac gtcagcgtga tgacttccgt
    31381 aaaggccata tagcaggttc tatcaatctg ttgccgagcg aaatcaaagc caacaatgtt
    31441 ggtgagcttg agaagcacaa agacaaaccg gttatcgtgg tagacggttc tggcatgcag
    31501 tgccaggagc ctgcaaacgc gctgacgaaa gctggttttg cgcaagtatt cgtgctgaaa
    31561 gagggcgttg ctggctgggc tggcgaaaac ttgcctctgg tgcgcggcaa ataatttacc
    31621 tgtcgtcttt catgatgcag gccgttagct gcaattaggc ccccagcgac ttattgttat
    31681 aagcttctgg ggacactcca ttttgcagcc gccctgcaac atgaaatttc agggtaaaaa
    31741 aacaggagct aaattatggc caatgttgaa atctatacca aagaaacctg cccgtattgc
    31801 catcgtgcaa aagcactgct gagcagcaag ggcgtgagtt ttcaggagtt gccgatcgat
    31861 ggcaatgccg ccaagcgtga agagatgatc aaacgcagcg gtcgcaccac ggttccccag
    31921 atttttattg acgcacagca cattggcggc tgtgatgact tgtatgcatt ggatgcacgt
    31981 ggtggactgg atcccctgct gaaataacgt gtgaacgttg gcattacatt gcgcagtatt
    32041 taaggacaac acttaagggt tttctacaca tgtcagaaca aaacaacact gaaatgactt
    32101 tccagatcca acgtatttat accaaggata tctctttcga agcgccgaac gcgccgcacg
    32161 ttttccagaa agattggcaa ccagaagtta aacttgatct ggatacggca tcttcccaac
    32221 tggcagatga cgtatacgaa gtggtactgc gtgttaccgt aacggcctcc ctgggcgaag
    32281 aaaccgcgtt cctgtgtgaa gttcagcagg gcggtatttt ctccatcgcg ggtatcgaag
    32341 gcacccagat ggcacattgc ctgggcgcat actgcccgaa cattctgttc ccgtatgctc
    32401 gtgagtgcat caccagcatg gtatcccgcg gtacattccc gcaactgaac cttgcgccgg
    32461 ttaacttcga tgcgctgttc atgaactatt tgcagcagca ggctggcgaa ggtactgaag
    32521 aacatcagga tgcctgatga accaacgtaa tgcttcaatg actgtgatcg gtgccggctc
    32581 gtacggcacc gctcttgcca ttaccctggc aagaaatggc cacgaggttg tcctctgggg
    32641 ccatgaccct gaacatatcg caacgcttga acgcgaccgc tgtaacgccg cgtttctccc
    32701 cgatgtgcct tttcccgata cgctccatct tgaaagcgat ctcgccactg cgctggcagc
    32761 cagccgtaat attctcgtcg tcgtacccag ccatgtcttt ggtgaagtgc tgcgccagat
    32821 taaaccgctg atgcgtcctg atgcgcgtct ggtgtgggcg accaaagggc tggaagcgga
    32881 aaccggacgt ctgttacagg acgtggcgcg tgaggcctta ggcgatcaaa ttccgctggc
    32941 ggttatctct ggcccaacgt ttgcgaaaga actggcggca ggtttaccga cggctatttc
    33001 gttggcctct accgaccaga cctttgccga tgatctccaa caattgctgc actgtggcaa
    33061 aagtttccgc gtttacagca acccggattt catcggtgtg cagcttggcg gtgcggtgaa
    33121 aaacgtcatt gccattggcg cggggatgtc cgacggtatc ggttttggtg cgaatgcgcg
    33181 tacggcactg atcacccgtg ggctggctga aatgtcgcgt cttggcgcgg cgctgggtgc
    33241 cgagcctgcc acctttatgg gcatggcggg gctgggcgat cttgtgctta cctgtaccga
    33301 caaccagtcg cgtaaccgcc gttttggcat gatgctcggt cagggcatgg atgtacaaag
    33361 cgcgcaggag aagattggtc aggtggtgga aggctaccgc aatacgaaag aagtccgcga
    33421 actggcgcat cgcttcggcg tagaaatgcc aataaccgag gaaatttatc aagtattata
    33481 ttgcggaaaa aacgcgcgcg aggcagcatt gacgttatta ggtcgtgcac gcaaggacga
    33541 gcgcagcagc cactaacccc agggaacctt tgttaccgct atgacccggc ccgcgcagaa
    33601 cgggccggtc attatctcat cgtgtggagt aagtaatgtc gtgtgaagaa ctggaaattg
    33661 tctggaacaa tattaaagcc gaagccagaa cgctggcgga ctgtgagcca atgctggcca
    33721 gtttttacca cgcgacgcta ctcaagcacg aaaaccttgg tagtgcactg agctacatgc
    33781 tggcgaacaa gctgtcatcg ccaattatgc ctgctattgc tatccgtgaa gtggtggaag
    33841 aagcctacgc cgctgacccg gaaatgatcg cctctgcggc ctgtgatatt caggcggtgc
    33901 gtacccgcga cccggcagtc gataaatact caaccccgtt gttatacctg aagggttttc
    33961 atgccttgca ggcctatcgc atcggtcact ggttgtggaa tcaggggcgt cgcgcattgg
    34021 caatctttct gcaaaaccag gtttctgtga cgttccaggt cgatattcac ccggcagcaa
    34081 aaattggccg tggcattatg ctcgaccacg ccacgggcat cgttgtgggt gaaacggcgg
    34141 taattgaaaa cgacgtatcg attctgcaat ctgtgacgct tggcggtacg ggtaaatctg
    34201 gtggtgaccg tcacccgaaa attcgtgaag gtgtgatgat tggcgcgggc gcgaaaatcc
    34261 tcggcaatat tgaagttggt cgcggcgcga agattggcgc aggttccgtg gtgctgcaac
    34321 cggtgccgcc gcatacaacc gccgctggcg ttccggctcg tattgtcggt aaaccagaca
    34381 gcgataagcc atcaatggat atggaccagc atttcaacgg tattaaccat acatttgagt
    34441 atggggatgg gatctaatgt cctgtgatcg tgccggatgc gatgtaatca tctatccggc
    34501 atacagtaac taatctctca acaacgctcc cggatatccc agctgccgcc aggcttcata
    34561 caccactacc gacaccgcat tggacagatt catgctgcgg ctgtccggca ccatcggaat
    34621 gcgaattttt tgttcagcgg gcagggcatc aagaatgctc gctggcaggc cgcgtgtttc
    34681 cgggccgaac atcagataat cgccatcctg atagcttacg gcgctgtgag caggcgtacc
    34741 tttcgtggtg agggcaaaca ggcgctgggg attttctgct tcgaggaacg cgcgatagtc
    34801 atgatgacgc gtaacggcgg taaactcgtg atagtccagc cccgcgcggc gcaggcgctt
    34861 atcgtcccag gcaaatccca tcggttcgat gatatgcaga cgaaagccgg tattagcgca
    34921 aagacggatg atgttgccag tatttggcgg aatttctggt tcgtaaagta cgatgtttag
    34981 catactgccc ccttagtgcg ggggcaggat agcagaaaat tggtgaaccg tgcggccttt
    35041 tcccctcacc ccggccctcc ccctgtctct tgatcaggag atctgatcaa gagacagctc
    35101 cctgagggag agggtt
//
LOCUS       DAJVUN010000019        34967 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.019, whole genome shotgun sequence.
ACCESSION   DAJVUN010000019 DAJVUN010000000
VERSION     DAJVUN010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34967
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.019"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1219
                     /gene="dsdA"
                     /locus_tag="OQQ76_000740"
     CDS             <1..1219
                     /gene="dsdA"
                     /locus_tag="OQQ76_000740"
                     /EC_number="4.3.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-serine ammonia-lyase"
                     /protein_id="HCS1967335.1"
                     /translation="GLPYVGLNEQDVQDAHARLSRFAPYLAKAFAETAATGGIIESEL
                     VAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISSSIKARGGIYEVLAHAEKLALEAGL
                     LTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADAWAW
                     KKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRL
                     KAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCML
                     LGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMVRLLDGFYTLSDQTMYDM
                     LGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMV
                     PEEKMNQYLAKGR"
     gene            complement(1327..2865)
                     /gene="emrY"
                     /locus_tag="OQQ76_000741"
     CDS             complement(1327..2865)
                     /gene="emrY"
                     /locus_tag="OQQ76_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrY"
                     /protein_id="HCS1967336.1"
                     /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI
                     SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL
                     STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI
                     LGGYICDNFNWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVG
                     GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI
                     GIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK
                     IDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS
                     GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS
                     SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA
                     KGVG"
     gene            complement(2865..4028)
                     /gene="emrK"
                     /locus_tag="OQQ76_000742"
     CDS             complement(2865..4028)
                     /gene="emrK"
                     /locus_tag="OQQ76_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrK"
                     /protein_id="HCS1967337.1"
                     /translation="MEQINSNKKHSNRRKYFSLLVVVLFIAFSGAYAYWSMELEDMIS
                     TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA
                     NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL
                     ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGY
                     IAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV
                     VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM
                     TATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL"
     gene            4442..5056
                     /gene="evgA"
                     /locus_tag="OQQ76_000743"
     CDS             4442..5056
                     /gene="evgA"
                     /locus_tag="OQQ76_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system DNA-binding response
                     regulator EvgA"
                     /protein_id="HCS1967338.1"
                     /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL
                     KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK
                     KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD
                     NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG"
     gene            5061..8654
                     /gene="evgS"
                     /locus_tag="OQQ76_000744"
     CDS             5061..8654
                     /gene="evgS"
                     /locus_tag="OQQ76_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system histidine kinase EvgS"
                     /protein_id="HCS1967339.1"
                     /translation="MKFLPYFFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPVRL
                     SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQLVRGINADYLNLLKRALNIKLTLRE
                     YADHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVTTLHDSMRPLT
                     SSKQVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGQNDYFIGSNIITSS
                     MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVVLNEVLNRFVDALTNEVRYEVSQNWL
                     DTGNLAFLNKPLELTEHEKQWIKQHPDLKVLENPYSPPYSMTDENGSVRGVMGDILNI
                     ITLQTGLNFSPITVSHNIHAGTQLNPGGWDIIPGAIYSEDRENNVSFAEAFITTPYVF
                     VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELD
                     ALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP
                     SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV
                     IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS
                     DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYI
                     CGWQDITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGS
                     GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHS
                     FGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTSEGAVKITTSLV
                     HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM
                     QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEHPITLPEKLSILIADDHPTNRL
                     LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS
                     LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI
                     EALKNNTANDLQLMQEILITFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANIL
                     NLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND"
     gene            complement(8710..9855)
                     /gene="yfdE"
                     /locus_tag="OQQ76_000745"
     CDS             complement(8710..9855)
                     /gene="yfdE"
                     /locus_tag="OQQ76_000745"
                     /EC_number="2.8.3.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA:oxalate CoA-transferase"
                     /protein_id="HCS1967340.1"
                     /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPP
                     GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFR
                     PGTMEKLGFSWETLQEINPSLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
                     DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA
                     YIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPR
                     FSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQA
                     RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS"
     gene            complement(9929..10873)
                     /gene="yfdV"
                     /locus_tag="OQQ76_000746"
     CDS             complement(9929..10873)
                     /gene="yfdV"
                     /locus_tag="OQQ76_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter YfdV"
                     /protein_id="HCS1967341.1"
                     /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA
                     LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL
                     IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
                     NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT
                     LAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII
                     IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS"
     gene            complement(10943..12637)
                     /gene="oxc"
                     /locus_tag="OQQ76_000747"
     CDS             complement(10943..12637)
                     /gene="oxc"
                     /locus_tag="OQQ76_000747"
                     /EC_number="4.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalyl-CoA decarboxylase"
                     /protein_id="HCS1967342.1"
                     /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE
                     GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMI
                     SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG
                     GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL
                     GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML
                     VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVIGDIASSMQGMLAELK
                     QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLV
                     NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF
                     GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA
                     FRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN"
     gene            complement(12691..13941)
                     /gene="frc"
                     /locus_tag="OQQ76_000748"
     CDS             complement(12691..13941)
                     /gene="frc"
                     /locus_tag="OQQ76_000748"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HCS1967343.1"
                     /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV
                     TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI
                     DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP
                     LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL
                     DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN
                     WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP
                     CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH
                     TAAVLQELGYSDDEIAAMKQNHAI"
     gene            complement(14454..15086)
                     /locus_tag="OQQ76_000749"
     CDS             complement(14454..15086)
                     /locus_tag="OQQ76_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdX family protein"
                     /protein_id="HCS1967344.1"
                     /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAA
                     AERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKT
                     NLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVME
                     NQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN"
     gene            15382..15657
                     /gene="ypdI"
                     /locus_tag="OQQ76_000750"
     CDS             15382..15657
                     /gene="ypdI"
                     /locus_tag="OQQ76_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis lipoprotein YpdI"
                     /protein_id="HCS1967345.1"
                     /translation="MKVNLILFSLFLLVSIMACNVFAFSISGGVSERSYKETEKTSAM
                     TTTHSTKLQPSQAILFKMREDAPPLNLTEEITPTYPTKANYLIHPVR"
     gene            complement(15734..15976)
                     /locus_tag="OQQ76_000751"
     CDS             complement(15734..15976)
                     /locus_tag="OQQ76_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdY family protein"
                     /protein_id="HCS1967346.1"
                     /translation="MIYLWMFLALCIVCVSGYIGQVLNVVLAVSSFFGMVILAALIYY
                     FTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR"
     gene            16329..17249
                     /gene="lpxP"
                     /locus_tag="OQQ76_000752"
     CDS             16329..17249
                     /gene="lpxP"
                     /locus_tag="OQQ76_000752"
                     /EC_number="2.3.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311285.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) palmitoleoyltransferase"
                     /protein_id="HCS1967347.1"
                     /translation="MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRI
                     GAMARPFLKRRESIARKNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDS
                     RVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQL
                     MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVEN
                     VATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKII
                     EKEIMRAPEQYLWIHCRFKTRPVGESSLYI"
     gene            17605..17676
                     /gene="ypdK"
                     /locus_tag="OQQ76_000753"
     CDS             17605..17676
                     /gene="ypdK"
                     /locus_tag="OQQ76_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_077777854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YpdK"
                     /protein_id="HCS1967348.1"
                     /translation="MKYFFMGISFMVIVWAGTFALMI"
     gene            complement(17741..18979)
                     /gene="alaC"
                     /locus_tag="OQQ76_000754"
     CDS             complement(17741..18979)
                     /gene="alaC"
                     /locus_tag="OQQ76_000754"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HCS1967349.1"
                     /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG
                     NPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI
                     VTIGSKEGLAHLMLATLDHGDMVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
                     LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY
                     DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG
                     TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKI
                     PEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA
                     MFRADGLLPASSKHIHENAE"
     gene            19356..21053
                     /gene="ypdA"
                     /locus_tag="OQQ76_000755"
     CDS             19356..21053
                     /gene="ypdA"
                     /locus_tag="OQQ76_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     YpdA"
                     /protein_id="HCS1967350.1"
                     /translation="MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKE
                     LLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRY
                     LIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWA
                     PTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLP
                     LFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQ
                     AMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAV
                     GLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTAR
                     QLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNC
                     CIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERV
                     EANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL"
     gene            21068..21802
                     /gene="ypdB"
                     /locus_tag="OQQ76_000756"
     CDS             21068..21802
                     /gene="ypdB"
                     /locus_tag="OQQ76_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator YpdB"
                     /protein_id="HCS1967351.1"
                     /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH
                     NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP
                     YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA
                     HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI
                     LRLKDLDFEVPVSRSKVKEFRQLMHL"
     gene            21815..22672
                     /locus_tag="OQQ76_000757"
     CDS             21815..22672
                     /locus_tag="OQQ76_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1967352.1"
                     /translation="MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSL
                     CIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPT
                     WLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
                     LHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYTQPLTRESVAQFFNITPNHLSKLF
                     AQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTP
                     GEYSARFQG"
     gene            complement(22675..25169)
                     /gene="ptsP"
                     /locus_tag="OQQ76_000758"
                     /pseudo
     CDS             complement(22675..25169)
                     /gene="ptsP"
                     /locus_tag="OQQ76_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416884.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
     gene            complement(25194..26238)
                     /gene="ypdE"
                     /locus_tag="OQQ76_000759"
                     /pseudo
     CDS             complement(25194..26238)
                     /gene="ypdE"
                     /locus_tag="OQQ76_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311291.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
     gene            complement(26238..27323)
                     /gene="ypdF"
                     /locus_tag="OQQ76_000760"
     CDS             complement(26238..27323)
                     /gene="ypdF"
                     /locus_tag="OQQ76_000760"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HCS1967353.1"
                     /translation="MTLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISR
                     ESAHILVDSRYFVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSW
                     ETAHRWKSELNAKLVSATPDVLRQIKTPEEVEIIRLACGIADRGAEHIRRFIQAGMSE
                     REIAAELEWFMRQQGAEKASFDTIVASGWRGVLPHGKASDKIVAAGEFVTLDFGALYQ
                     GYCSDMTRTLLVNGEGVSAESHPLFDVYQIVLQAQLAAISAIRPGVRCQQIDDAARRV
                     ITEAGFGDYFGHNTGHAIGIEVHEDPRFSPRGTKTLQPGMLLTVEPGIYLPGQGGVRI
                     EDVVLVTPQGAEVLYAMPKTVLLTGEA"
     gene            complement(27338..28585)
                     /locus_tag="OQQ76_000761"
     CDS             complement(27338..28585)
                     /locus_tag="OQQ76_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HCS1967354.1"
                     /translation="MAIKKRSATVVPGASGAAAAVKNPQASKSSFWGELPQHVMSGIS
                     RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF
                     GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV
                     PSTFIGALIIFIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP
                     FGGWINGGIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP
                     VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA
                     LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVI
                     TALMVVFLRLMMFRKGKLLIDSL"
     gene            complement(28607..28933)
                     /locus_tag="OQQ76_000762"
     CDS             complement(28607..28933)
                     /locus_tag="OQQ76_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-like phosphotransferase enzyme IIB
                     component 1"
                     /protein_id="HCS1967355.1"
                     /translation="MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD
                     GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM
                     IASEQQ"
     gene            complement(29152..30117)
                     /gene="glk"
                     /locus_tag="OQQ76_000763"
     CDS             complement(29152..30117)
                     /gene="glk"
                     /locus_tag="OQQ76_000763"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HCS1967356.1"
                     /translation="MIKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV
                     IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT
                     AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH
                     VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI
                     TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG
                     FRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL"
     gene            30321..31577
                     /locus_tag="OQQ76_000764"
     CDS             30321..31577
                     /locus_tag="OQQ76_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HCS1967357.1"
                     /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR
                     LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPG
                     LIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALF
                     GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM
                     EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMNQMKNPVLVLGIGGFILGILGVIGG
                     PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA
                     LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML
                     PAWLLLAGKPMMMVNRPKQQPPHDNV"
     gene            31692..32018
                     /locus_tag="OQQ76_000765"
     CDS             31692..32018
                     /locus_tag="OQQ76_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HCS1967358.1"
                     /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW
                     DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR
                     GHGHRH"
     gene            complement(32159..33397)
                     /locus_tag="OQQ76_000766"
     CDS             complement(32159..33397)
                     /locus_tag="OQQ76_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HCS1967359.1"
                     /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQA
                     GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE
                     IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL
                     LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS
                     LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAY
                     LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP
                     SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV
                     IVVLVVALNIWLLVGTALGL"
     gene            33733..34935
                     /gene="nupC"
                     /locus_tag="OQQ76_000767"
     CDS             33733..34935
                     /gene="nupC"
                     /locus_tag="OQQ76_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupC"
                     /protein_id="HCS1967360.1"
                     /translation="MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLA
                     WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS
                     ALIGILQHIRLLPVIIRAIGFLLSKVNDMGKLESFNAVSSLILGQSENFIAYKDILGK
                     ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD
                     ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG
                     WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST
                     LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS
                     ASIAALVL"
BASE COUNT         9225 a         8680 c         8060 g         9002 t
ORIGIN      
        1 aggtttacct tatgttggcc tgaacgaaca ggatgttcag gacgcccatg cgcgcttatc
       61 ccgttttgca ccctatctgg caaaagcatt tgctgaaact gctgccactg gggggattat
      121 tgaatcagaa ctggttgcca ttccagctat gcaaaaacgg ctggaaaaag aatatcagca
      181 accgatcagc gggcaactgt tactgaaaaa agatagccat ttgcccattt ccagctccat
      241 aaaagcacgc ggcgggattt atgaagtcct ggcacacgca gaaaaactgg ctctggaagc
      301 ggggttgctg acgcttgatg atgactacag caaactgctt tctccggagt ttaaacagtt
      361 ctttagccaa tacagcattg ctgtgggctc aaccggaaat ctggggttat caatcggcat
      421 tatgagcgcc cgcattggct ttaaggtgac agttcatatg tctgctgatg cctgggcatg
      481 gaaaaaagcg aaactgcgca gccatggcgt tacggtcgtg gaatatgagc aagattatgg
      541 tgttgccgtc gaggaaggac gtaaagcagc gcagtctgac ccgaactgtt tctttattga
      601 tgacgaaaat tcccgcacgt tgttccttgg gtattccgtc gctggccagc gtcttaaagc
      661 gcaatttgcc cagcaaggcc gtatcgtcga tgctgataac cctctgtttg tctatctgcc
      721 gtgtggtgtt ggcggtggtc ctggtggcgt cgcattcggg cttaaactgg cgtttggcga
      781 tcatgttcac tgcttttttg ccgaaccaac gcactcccct tgtatgttgt taggcgtcca
      841 tacaggatta cacgatcaga tttctgttca ggatattggt atcgacaacc ttaccgcagc
      901 ggatggcctt gcagttggtc gcgcatcagg ctttgtcggg cgggcaatgg tgcgtctgct
      961 ggatggcttc tataccctta gcgatcaaac catgtatgac atgcttggct ggctggcgca
     1021 ggaagaaggt attcgtcttg aaccttcggc actggcgggt atggccggac ctcagcgcgt
     1081 gtgtgcatca gtaagttacc aacagatgca cggtttcagc gcagaacaac tgcgtaatac
     1141 cactcatctg gtgtgggcga cgggaggtgg aatggtgccg gaagaaaaga tgaatcaata
     1201 tctggcaaaa ggccgttaat aacgtttcaa cgcagcatcg caatcctttc cctgggtgag
     1261 cgatgctgcc gatggcgcag acttaagatc cccggtctta cccgctataa ccccctcctt
     1321 ttatcatcac ccaacgcctt tcgctgtaaa cggcggtttc gcaaaccaaa ccaaaaccgt
     1381 aagtaagata aaagcaatag ccgccatacg gaaaatctca tttgcagaaa tagaaagtga
     1441 ctgctgggtt atttcattat taatttcatt aagaactcct gaaagcgaac cataatattt
     1501 atccataatt tgtgacgatg aattaaacac ggggttaaat tgatcgatgg ttgctgtcaa
     1561 ctgactatgg tgtaacgatt cgcgtcgtcc ccacagcgtc attgtcaacg acgtaccaac
     1621 tgatcctgac aaggtacgaa aaaaattact catactcgag gcattggcaa atttattatc
     1681 tggcaagcct gaaaacgaaa tcgttgttaa gggtaaaaag aaacaggcaa cggcgaatcc
     1741 ctgaaaaaac tgcggcaaaa tgatgcctgt aaaatcaatc gttggcataa atgtcacaga
     1801 acgccagtaa tagcaaaccg catacatcaa aaaactaaat gtcactaaca accgcatgtc
     1861 tattttgttg ccataacgtc ctatcaaagg tgaaattaat agtggcatga tgccgatggg
     1921 cgcataagca agtccggccc atatcgcatt ataccccatc gtttcctgga gtaactgcgg
     1981 cataaggacg atcgctccag agtaaaataa atacgcgcat gtgatactca caataccaat
     2041 ggtgaagtta cgggacttaa acaaactgag atcaagaatc gggttctctg aggtcgactc
     2101 ccaaatgact aaagagatca gagaaataac tgatactact gttaatatta ttattgtact
     2161 cgagttgaac caatccagat cgcgcccttt atcaagcata atttgcaagc caccaacacc
     2221 gagcactaac agggtcagtc ctggtagatt cattttgacc ggtgaagtct cagtttctct
     2281 tcctttaagt aaggttaagc ataatgtcag gacgataatc cccataggga cattgattaa
     2341 aaatatccaa ccccagttaa agttatcaca aatataaccg cccaatatcg gcccacatat
     2401 cggagcgata atcacggtca ttgaccataa tgccagagca aatgttcttt tttctggcgg
     2461 ataattcctt aataataaac tctgtgacag tggaattaac ggccccgcca ttaacccctg
     2521 aacgactcta aaaaatatca gcacatcaag attggtcgat aggctacaca ttaatgaaga
     2581 cagcgaaaaa aaggttactg aaagtaaaaa taatcttaat tcgcctattc tttgtgccaa
     2641 cctgccagta acagggatcg caatggcatt tgctacacca aacgaggtga taacccaggt
     2701 gccttcgtct gttgatgctc ccagaaagcc agatattgtc ggtattgcga cgttagaaat
     2761 agtggaatcc aacatttgca taaatgtcgc taatgacaat gcaatagtga cgcaccataa
     2821 cgtcccaccg gttaatggtg ccggagttga tttagtgatt gccattaaag ttgtccatta
     2881 tgcgaaataa tgttgctaat ttctttttct atcggactgg tatcgataac taaagcctta
     2941 ctggtataag ccggcatgga ggtcacggtt gaagccagct caggcatctc ggcaatgtct
     3001 tcgttcttcg tatcaatagt tgctgtcatc gataaaccaa tacgcaaggg atgttccatg
     3061 agttcttttg gatcaagaga aacttcaacc ggtacacgct gaacgatttt gatccagttc
     3121 cctgtcgcat tttgtgcagg taataaggag aacgcattgc cggttcccat attgatccct
     3181 gtcacccgac catgaaacac aacattttca ccataaagat cgctgataat attgaccgat
     3241 tgaccaatcc gcacatccgt gagttgtgtt tctttaaagt tggcattaac ccacatttga
     3301 cgtgccggta cgacagccat taacgattgt ccggggctca ctgtttcgcc gacctgaaca
     3361 cttctctggg caatatagcc ggtaaccgga ctcttaatat ccgtacgttt aagcgccaac
     3421 caggcttctt tagttgcatc cgccgcttca acgacttgtg gctgacggtt taatggtgtg
     3481 ttcattacta aagctttatt cgctttataa gcctggatag cggcattcaa tgccgctttg
     3541 ctacttatta acgtatcttt ggtatgctcc agcgtttctt ttgaaataac cccctgcttc
     3601 gctaacggca ctcgacggtt ataatcttct aaagattgtt gatactgaat acgtgctgaa
     3661 gcgacttcgg cactgtattg tttatcctgt aagtatagtt tattcgtttg ccgaacaata
     3721 tttgccagat tatttttagc tttattgagt gcgatagtgg catcagtttt atccagtgaa
     3781 actaaaatgt caccttgtcg aacgtagttc gtatctttat gattaacgac agtgacacta
     3841 cctgagactt gtgcagaaat tggatctgca ttccccgtga cataggcgtc atctgtacta
     3901 atcatgtctt ctaattccat tgaccaatag gcataggcac ctgaaaacgc aataaataaa
     3961 actaccacca ataaagaaaa gtattttctt ctgttagaat gttttttatt tgaattaatc
     4021 tgttccacta ttatctctca tttctcatag atgaaattta tgaattgaat gacaagagca
     4081 ttcattcttc atatcaaaca cagtgcatgt gttgcacatt atcccaggaa cgttggaggc
     4141 ctaatttaaa tgaggtgcaa aaaaacaaca gaggactaaa ccgtggcttt tgcaatacaa
     4201 ttcttacgcc tgtaggatta gtaagaagac ttatagtgct aacttgaaac tataaatctc
     4261 ggtacaaccc ctgattttat tgttgacatt tcatttatgc cgactattta tatggtatac
     4321 ttgtcgaatt atcttaaagg aagctcagat tttcttattt ttattgagaa aatgagatga
     4381 cgccttatgt ctgtattact acagggagaa gggagatgct tcattgcaaa gggaataatc
     4441 tatgaacgca ataattattg atgaccatcc tcttgctatc gcagcaattc gtaatttatt
     4501 gatcaaaaac gatattgaaa tcttagcgga gttgactgaa gggggaagcg ccgttcagcg
     4561 ggtggaaaca cttaagcctg atatcgtcat cattgatgtc gatatccccg gagttaacgg
     4621 tatccaggtg ttagaaacgc tgaggaagcg ccaatatagc ggaattatta ttattgtctc
     4681 cgctaaaaat gaccattttt acgggaaaca ttgtgctgat gctggcgcta atggattcgt
     4741 gagtaaaaaa gaaggcatga acaatatcat tgcggctatt gaagctgcaa aaaatggcta
     4801 ctgctatttc cccttctctc tcaaccggtt tgttggaagt ttaacgtccg accagcaaaa
     4861 actcgactcc ttatcgaaac aagaaattag tgtcatgcgg tatattcttg atggcaagga
     4921 taataatgac attgctgaaa aaatgttcat cagcaacaaa actgtcagca cttataaaag
     4981 tcgcctgatg gaaaaattag aatgtaaatc actgatggat ctttacacat tcgcgcaacg
     5041 taacaaaatc ggctaatcac atgaagtttt taccctattt ttttcttctc tgttgtggtc
     5101 tttggtcgac cataagtttc gcagacgaag attacatcga atatcgtggc atcagtagta
     5161 acaaccgtgt cacacttgat ccagtacgtc tgagcaacaa ggaattacgt tggttagcga
     5221 gcaaaaaaaa tcttgtgatt gcagtacaca agtcccaaac ggctaccttg ttgcataccg
     5281 attcgcagca actggttcgt ggtattaatg ctgattattt aaatctttta aaaagagcgt
     5341 taaatatcaa attaacactc cgggaatacg ccgatcatca aaaagcaatg gacgcgctgg
     5401 aagaaggtga agtcgatata gtgttatcac atttagttgc ttcgccgcct cttaatgatg
     5461 acattgctgc aaccaaacca ctgataatta cctttccggc gctcgtcacc acccttcacg
     5521 attcaatgcg accgcttacc tcatcaaaac aagtaaatat tgctcgagta gcaaattatc
     5581 cccctgacga ggtaattcat caatcatttc caaaagcaac aattatctct tttacaaatt
     5641 tatatcaggc attagcatcc gtctcagccg gacagaatga ttactttatt ggtagtaaca
     5701 tcattaccag cagtatgatt tcccgctatt tcactcactc cttaaatgta gtgaaatatt
     5761 ataactcacc gcgtcaatat aattttttct tgaccagaaa agaatctgtc gttcttaatg
     5821 aagtactcaa tcgatttgtt gatgctttaa caaatgaagt tcgctatgaa gtttcacaaa
     5881 attggcttga tacaggaaac ctggcctttc tgaacaaacc attagaactc actgaacatg
     5941 aaaaacagtg gattaagcaa catcccgatt taaaggtgct ggaaaatcct tactctcctc
     6001 cctattctat gacggatgaa aatggctcgg ttcggggcgt tatgggggat attcttaata
     6061 ttattacctt gcaaacaggt ttaaattttt ctccgatcac cgtttcacac aatatccatg
     6121 ccggaacaca gcttaacccc ggtggatggg atataatacc tggcgctatt tatagtgaag
     6181 atcgagaaaa taatgtttca tttgcagaag ctttcataac aacgccatac gtttttgtca
     6241 tgcaaaaagc acctgacagt gaacaaacat taaaaaaagg aatgaaagtt gccattccat
     6301 attattatga gctgcattcg caattaaaag agatgtatcc ggaggttgag tggataaaag
     6361 tcgataacgc cagcgctgca tttcacaagg tcaaggaagg tgaacttgat gctctggtcg
     6421 cgacacagct aaattcgcgt tacatgatcg atcattacta tcctaatgaa ctgtatcatt
     6481 ttcttattcc cggcgttccg aatgcatcgc tttcgttcgc ttttcctcgc ggagaaccgg
     6541 aacttaagga tattattaat aaagcactga atgcaattcc cccaagcgaa gttctgcgcc
     6601 tgacggaaaa atggattaaa atgcccaatg tgaccattga cacatgggac ctctatagcg
     6661 agcaatttta tattgttacg acattatccg ttttattagt tggcagtagc cttttatggg
     6721 gattctacct gttacgctca gttcgtcgtc gtaaagtcat tcagggtgat ttagaaaacc
     6781 aaatatcatt ccgaaaagca ctctcggatt ccttaccaaa tccaacttat gttgtaaact
     6841 ggcaaggtaa tgtcattagt cataatagtg cttttgaaca ttatttcact gcggattact
     6901 acaaaaatgc aatgttacca ttagaaaaca gtgactcacc ctttaaagat gttttttcta
     6961 atgcgcatga agtcacagca gaaacgaaag aaaatcgaac aatatacaca caggtatttg
     7021 aaattgataa tggcatcgag aaaagatgca ttaatcactg gcatacatta tgcaatctgc
     7081 cagccagcga tcatgctgtt tatatttgtg gttggcaaga tattaccgag acgcgtgatt
     7141 taattcatgc actcgaagta gagagaaata aagcgatcaa tgcaactgtc gcaaaaagtc
     7201 agtttctggc aacaatgagt cacgaaataa gaacaccaat aagctccatt atgggcttcc
     7261 tggaacttct gtcgggttct ggtcttagca aggagcaacg ggtggaggcg atttcacttg
     7321 cctacgccac cggacaatca ctcctcggct taattggtga aatccttgat gtcgacaaaa
     7381 ttgaatcggg taactatcaa cttcaaccac aatgggtcga tatccctact ttagtccaga
     7441 acacttgtca ctctttcggt gcgattgctg caagcaaatc gatcgcatta agttgcagca
     7501 gtacatttcc tgatcattac ctggttaaga tcgaccctca ggcgtttaag caggtcttat
     7561 caaatttact gagcaatgct ctcaaattta cctccgaggg ggcagtaaaa attacgacct
     7621 ccctggttca cattgatgac aaccacgctg ttatcaaaat gacgattatg gattctggaa
     7681 gtggattatc gcaggaagaa caacaacaac tctttaaacg ctacagccaa acaagtgcag
     7741 gtcgccagca aacaggatct ggcttaggct taatgatctg caaagaatta attaaaaata
     7801 tgcagggcga tttgtcatta gaaagtcatc caggcatagg aacaacattt acgatcacaa
     7861 tcccggtaga aattagccag caagtggcga ctgtcgaggc aaaagcagaa caccccatca
     7921 cactacctga aaagttgagc atattaatcg cggatgatca tccgaccaac aggctattac
     7981 tcaaacgcca gctaaatcta ttaggatatg atgttgatga agccactgat ggtgtgcaag
     8041 cgctacacaa agtcagtatg caacattatg atctgcttat tactgacgtt aatatgccga
     8101 atatggatgg ttttgagttg actcgcaaac tccgtgagca aaattcttcc ttacccatct
     8161 gggggcttac agccaacgca caggctaacg aacgtgaaaa agggttaagt tgcggcatga
     8221 acttatgttt gttcaaaccg ttgaccctgg atgtactgaa aacacattta agtcagttac
     8281 accaggttgc gcatattgca cctcagtatc gccaccttga tatcgaagcc ctgaaaaata
     8341 atacggcgaa cgatctacaa ctgatgcagg agattctcat cactttccag catgaaacgc
     8401 ataaagatct acccgctgcg tttcaagcac tagaagctgg cgataacaga actttccatc
     8461 agtgtattca tcgcatccac ggtgcggcta acatcctgaa tttgcaaaag ttgattaata
     8521 ttagccatca gttagaaata acacctgttt cagatgacag taagcctgaa attcttcagt
     8581 tgctgaactc tgtaaaagaa cacattgcag agctggacca ggagattgct gttttctgtc
     8641 agaaaaatga ctaaatagcg gctcccacaa tgttcaaatg tgggagctat ttaccagcac
     8701 atcttacatt tatgatgaga actcctggcg aatttgttcc ccatgctggt cgagcgttgc
     8761 cgctcccggc ataacatgcg ggtccgcgca gccgctgatt tttatcggat tacccggcat
     8821 cattattccc ccggcttcaa tcaacatatt tctcgcctga gtttgtggca atttaatggc
     8881 ctcagccaca cttaataacg gcgcgacggg tacaccaact tcatgtattc tggctaacca
     8941 aacttcagct gcctgcgttt ttaacgtccg ctcaatatat tgtttaagaa tagcctggtt
     9001 ttgtacgcgt aaaatattgc tgctaaatcg gggatcatta accagttccg taagctccag
     9061 tgcctggcat aacgcagaaa aaagcttgtc attaccacaa caaatcgtaa tcggcttatc
     9121 ctgagtattg aaaacatcaa aaggtgccat gtagggatgg cgatttccca gacgttgtgg
     9181 tgacttccct gtcgcgatat atgccatcag accatgctcc agaaaactca gcgtggcatc
     9241 aaacatcgct atatcgacat gcgcccctct ctggctcttt tcgcggccat aaagtgcact
     9301 cactattccg ctgaataaat agacaccgcc gcatagatcc gcaagagatg taccaacgcg
     9361 cactggcgga gcatcaggat atcctgtttc catcattatc ccgctcattg cctgaatgat
     9421 ggtatcgtag gcaggagcat cttttagcgg accggtatgt ccgaaacctg acgatgaagc
     9481 atatatgagg ctcgggttga tttcttgaag cgtttcccat gaaaacccca gtttttccat
     9541 tgtacctggg cgaaaattct cagctaatac atcagcttgt ttgagcatat ttataaatat
     9601 acttttatcg taatcattct ttaaatcaag aaccacactc tctttgccat gattaataaa
     9661 actgtaatag agtgactgtc catccacata gggaccaaat gtgcgggtat catcaccatg
     9721 acccggcggc tcaactttaa ttacccttgc gcccatatta caaagaagtt gagttccgaa
     9781 aggtccatta aggacatgtg tcatatcgat aactaataag ccttcaaacg gccctttgct
     9841 ttcattattt gtcatttgct tatgccttga aaaaagccga aggtgaaaag acacttcggc
     9901 atttatgtaa aatcaataac atgattaatt atgaaaccag tcgactgaca taaatccaca
     9961 agggagccgt gacgacaaag cccagtacgc tcacagccaa tgacgctgta ccagtacggg
    10021 tgtagacatt aaaccggctg gcaataataa ttccggagaa tgccggcggt aatgcgcctg
    10081 ccagtaccat catctgcaga tgttcgctgt tcaaatgaca tgccatacca acgagaagca
    10141 gtgccagtgg catcagaatc agcttcagga aggtgttata agcaatttcg gcactgaact
    10201 cgaatttatg tgcagccaga gtcaaccccg cagcgaatac cgctacccct gagttagcct
    10261 tcgcaatcag attaaaggtt gggtcccatg ctgccggaat ttttacccca accaacacca
    10321 ggatcgttgc cagaacaggt gcccatacta ctggctcctt tgccgcagaa attaatgcac
    10381 tcagattact attcttctta ccatccgctc ctgaagaagg attcagcaaa tacagaccaa
    10441 taggaatagt aattgcgtta acaataatag aaataattgc taccactaaa cctgttgata
    10501 cggaatcacc ataaatagga tcgagaactg caaaccctag gaatccaatg gtaggtgaac
    10561 ctgcaattaa tgcacataca gctgcttctg catgggtacg tttaaaaaat ttgtagcaac
    10621 cgaaccagga gaaaaagaaa catccgacaa taaccacaag tgatacaagg gtcagacgag
    10681 tgtccgcaaa aatcatttcc ctgtttgccc gagtaataga tacaaataga gccgcaggaa
    10741 gcgcgtagtt taataccagt ttattaaatg cgcgggcttg atcttctgaa aaagtttcgc
    10801 gtctgccgct aaaataaccc aacagcatga ttacgataat aggcaataaa tcgccaataa
    10861 aaaatgttag cataatagta tttccgataa gggtcccctc accatcgcat aatgagttgg
    10921 caagaggaga cgatgtcagt atttaattac cagcgacttg ttttgggtta agtttggtaa
    10981 tatggccact ttcagttcct gctgcagggt cgatgaccac attaataatg gtcggtttgc
    11041 gcgactgaat accggtggtt aaagcatgac gaagttcatc tgtcgtggtg acgttatagc
    11101 caacgccacg aaacgcatcc attaatttgt cataccttgc atggtgcaac agatccgttg
    11161 gtgatggtgc accagcgcca ctgagatcaa caccgtctcc tctgtagatg ccgccattat
    11221 taaaaataac gatcgtcacc ggcaggttat atcgacaaat cgtttcaatt tccatcccac
    11281 tgaaaccaaa agcactatca ccttcaatgg cgacaaccgg agaaccagaa gtcacgctag
    11341 caccgatggc atagcccata ccgatgccca tgacacccca ggtaccacaa tccagacgac
    11401 gacgtggttt atacatatca ataatatttc gtgcattatc cagggtattt gcaccttcat
    11461 taactaaata aatatcctgg ttctcgcgca atacgtcgcg cacagcactt aatgcattaa
    11521 agtaatttaa tggttgagta tctgtactta atttttcatg cattttttgt gcattttgct
    11581 gcttgtggat atttaaaata tcgcgccata ccagtggagt cgtaaatgtg ttttgtttca
    11641 gttctgccag cataccttgc atactggatg caatatcacc aatgactggc acagcaatgg
    11701 ggcggttgct gtcaatttcc tgcggttcaa tatccagttg aataaactgt gtatctgccg
    11761 cccatccttt tttaccgtgt gccaataacc aattcagtcg tgcaccaaca agcatgacaa
    11821 cgtcagcatt tgccagggca aacgaacgcg cagctgccgc agaaagtgga tgcgtatctt
    11881 caaggatccc tttcgccata gacattggca ggaatggaat ctgagcactt tcaataaatt
    11941 cacgaagctg ttcatcagct tgtgaatacg ccgcgccttt gccaaggata attaatggcc
    12001 gttcagcttt tgctaaaagc gaaattgcgc tagtgactga cttcgggcat ggcaataatg
    12061 ctggcgacgg attttcaact ttaacaatcg tggttaacgc ttcgtctttt tccatcgtcg
    12121 cggccaggac atttgctggc aaatcaagat aaactccgcc agggcgaccc gatacagaga
    12181 cccggatagc gcgtgccaat gcaatgccaa gatcctgcgg ctgattaacg cgaaatgctg
    12241 ctttggcata cggttttgcc gcattcattt ggtccagctc ttcataatca ccttgctgta
    12301 ggtcgacgat cgcgcggtcg ctggagccgc taatcatgat catcggaaaa ccatttaccg
    12361 ttgcgttggc caatgccgtc aaaccattga ggaatcctgg cgcagaaact gtcaggcaga
    12421 tccccggttt ttgggtaaga aaaccgcttg ccgcagcggc atagcctgcc gactgctcat
    12481 gacgaaaacc aatataacga atgccttccg cctgggcatg gcgtgccata tccgtcacag
    12541 gaatacctac aacaccataa atagtgtcaa tattattctg ttttaatgct tcaacgatga
    12601 tatgcatacc atctgtcatt tgaagttgat ctgacatgat taataacctc gaaattttta
    12661 taaattggga gccagaagcc cccgttaata tcagatggcg tggttttgct tcattgcagc
    12721 aatttcatcg tcgctataac ctagctcctg caatacagca gcggtatgtt cacctaatag
    12781 cggcgcagct ttaatatccg gcgtaaaagc agagaatttc attggacaac caacggtcag
    12841 atattttcca cgcaacggtt gttccacttc aacaacactg ccactttggc gcaaagaggg
    12901 atcaagtgaa atttctttca tacttaaaac cggtgcacaa ggaatatcaa actgagtcaa
    12961 ataggccacc gcttcatgtt tatcaatagt gacagtgtat ttttcgattt cagcaaaaat
    13021 atcgaaaata tgtggctgtc gggcatgggc tgtactgtat gccggatcgg taatccattc
    13081 tggtttgccg atggctttac aggtgttttc ccagttttgc tcctgaatag tgaaataaat
    13141 ataggcgtta ggatcggttt cccagccttt acatttcagg atccagccag gctgaccgcc
    13201 accacctgca ttaccaccgc ggggaactgc atcaccaaat gtaccattcg gatactgcgg
    13261 gtattcttcc agataaccca atttatcgag acgctgctgg tcacgtaatt tcacgcggca
    13321 aaggttcaat acggcatcct gcattgacat ggtgactcgt tgcccacgcc ccgttttttc
    13381 gcgatgcagc aaagcagcaa gtaaaccgat cagcaaatgc attccggtgt tgctgtcacc
    13441 caacgctgca gcgcttacca gcggcggacc atcccaaaaa cccgtagtgg atgccgcgcc
    13501 acccgctgcc tgagcaacgt tttcataggc ttttacattc acataaggcg aacactcatc
    13561 aaaccctttg atcgaaccaa aaatcagacg tggattgatt tcttgaatat gctcccaggt
    13621 gaagcccatg tgatcaatgg cccctggatg aaagttctcg actaagatat cagcttcgcg
    13681 gatcagcttt tccattacct ctttgccttc cgctgttttg gtatttaact caatagaacg
    13741 tttgttactg ttaagcatgg tgaagtaaag cgcatcgata tcaggaatat ctcgcagctg
    13801 gtgacgcgtt acgtcaccaa cgccgggacg ttcaatttta ataacgtcag cgccaaacca
    13861 ggccagcatt tgagtacaag atgggccaga ttgcacaccg gtgaaatcga gaactttaat
    13921 tccttgaagt ggagttgaca tagcaatacc tattagttaa ttaaatatgt gttaatttag
    13981 cgtttattta aggcgtaata tcttctataa atagcccgca aaatatcgtc gtagctgcac
    14041 tcgatatttt taaaatcctg tatcaagtgc tgaaaatcat ttcatcgcca cttccaattc
    14101 ctttctgcat ggtaagtagt gaggacgaaa agaagaatat gataaatatt aattcgtggt
    14161 aatcagagag agtcgcgaca tttgtgatgt tattcttaca actgtaagaa gcgccggtga
    14221 tttacaagta agggtatgat tacgcttttt aaagcgtacc ataaaacata acataataaa
    14281 tgatttgtga tgacacggga ttattggggt ttactttgag gaagataaaa tgcgtgttta
    14341 tagaaccgcg agcgccaaat aattttatga ccacaacctg tcgtattgtg gtcataaaaa
    14401 attgtcggct ggagggagtt aaatccttta cctcaatata ctgcctgtca gcattagttc
    14461 acaaacagtg cttcgctgtc gacgatgatt ccatcttccg cacctttaag cgccaggttt
    14521 gcctcgtagt attgcttttt atcaagcagt ttctgcgcat cagcaagtgc attacgagtc
    14581 tgtttaagcg gcatcagata ttggttttcc attacgccaa caccggccag gcgaagttct
    14641 tccattgcgc cctttttatc ccctttcgcc attttttcat tggcaatttt tatcgcggct
    14701 tctttttcgg gagttgctac ataactctca gaaattccga cagatgcatt aatgacaata
    14761 tattggtcat cattgagatt ggtcttttta cctggcttag cgaactttgc ccattcggta
    14821 ctgtcatctg acagcaaagc ggaagcttca ttggtcagtt cttttgcctt ttctggatcg
    14881 ccatgaaaca gagccaggcg cgctacctgc acgtcacgca tcgcatataa accttgttca
    14941 gagatacgct ctgctgctgc cgttttctgg gtttgctgaa cttgctgagt ttgctgttgt
    15001 gccgctaccg gtgcattatc agcagcccat acagttgaag atgccagaat tgctgtgacc
    15061 atcgtagcca taattaaacg tttcatactt acctcattct ttaacagttt tagaaaacgc
    15121 cgccatcata ttgggtgagc atgaaatgag aaatcagaga gcaacggtca ttttgaaagg
    15181 gttatcttac agttgtagtt attatcgcaa gaagtatttt agtcttacaa ttgtaggaat
    15241 ctgcttcctg tcgcagagaa ctattcttat gtaccacaaa gagatgtcat ttattatatc
    15301 gatgtaaata ttgattaatt atatgtaaat acagccataa catcgtaggt tctcagtgaa
    15361 ccattttcag gataactttc tatgaaagta aacttaatac ttttcagctt atttttattg
    15421 gtctctatta tggcatgcaa tgtttttgca ttttccattt ctggtggtgt aagtgagagg
    15481 agctataaag agactgaaaa aacatcagcg atgacgacca cacactctac aaaacttcag
    15541 ccatcacagg cgattttgtt taagatgaga gaagatgcgc caccattaaa cctcacagaa
    15601 gaaatcacgc ctacttatcc gacaaaggcg aattatctta ttcatcctgt gcgatagcgt
    15661 ctgtcacatg gcaggtgaac aatcatgtct gatgctgatg tgaacacctg cccaaatgag
    15721 ccatcctgac ccactatcgc ctgccatacc ccaccataaa gcgaatcatc aagccacaag
    15781 ccggggcaag aaacataaat atccccgtca ctagttcatt accgccagtt aaccacatgg
    15841 tgaagtaata aatgagtgca gcgaggatca ccatgccgaa gaaagaagag accgccaata
    15901 ccacgttcag tacctgaccg atgtagccgc ttacgcagac aatacacagg gcgagaaaca
    15961 tccataaata aatcatagct caacctcctg ccgcgctaaa aaacctgtaa cttcagtcac
    16021 tttaatagta agacaatcct taacctctgg caatttttgc taagcatcaa tgaaaacagc
    16081 atgttaaatg caagactgtt gtgtacggaa aaatatttac tttgcacgat taataatcag
    16141 tagctgaaag cagtcagcga gtgataaagt acagataccg cattcatgct cctcgtggtt
    16201 atgtcctgac tagtctttac actctttaca ggaaccattg tcgtacatga tggcccaacc
    16261 aattgagtgt accgctgtcg acatggaatc ttctgcgata caacaattcg tatctacaga
    16321 aggtaactat gtttccacaa tgcaaatttt cccgcgagtt tctacatcct cgctactggc
    16381 tcacatggtt tgggcttggt gtactctggc tttgggtaca gcttccttat cctgttctct
    16441 gctttctcgg cacgcgtatt ggcgcaatgg cgcgaccatt cctgaaacgt cgtgaatcta
    16501 tcgcccgtaa aaacctggaa ctttgtttcc cgcagcattc tgcggaagaa cgcgagaaga
    16561 tgattgccga aaactttcgt tcactcggca tggcgctggt agaaaccggc atggcatggt
    16621 tctggcccga cagtcgcgta cgtaaatggt ttgatgttga agggttggat aaccttaaac
    16681 gcgcacaaat gcaaaatcgc ggcgtaatgg ttgtcggcgt ccattttatg tcgctggaac
    16741 tgggcggccg cgtgatggga ctgtgccaac caatgatggc tacctatcgt ccacataata
    16801 atcagctgat ggaatgggtg caaacccgtg ggcgcatgcg ctctaacaaa gcaatgatcg
    16861 gcagaaataa tctgcgcggc attgtcggtg cactgaagaa aggtgaagcg gtatggtttg
    16921 ctcccgatca ggattatggt cgtaaaggca gctccttcgc gccgttcttt gcggtggaaa
    16981 atgtcgccac aaccaatggc acctatgttc tctcccgtct ctctggcgca gccatgttga
    17041 ccgtaacgat ggtaagaaaa gcggattaca gcggatatcg tttgttcatc accccagaga
    17101 tggaaggcta cccgacagat gaaaatcaag ccgctgccta tatgaacaag attatcgaga
    17161 aagagatcat gcgcgcaccg gagcagtacc tctggatcca ctgtcgcttt aaaacgcgcc
    17221 cggtgggaga atcgtcgttg tacatttaac aaactgctct tactctttcc ctcctcaaat
    17281 cggccataat aaccccatga tttttatggc ttttttctta aggttttttc cttcgctgaa
    17341 tatctaatta ttaccgtcag aaattaaact gtctccgata tgagacactt gtaagttact
    17401 aaaagtaaat aagaaaatgc ctcttgtctc gtttcagttt taggcgtaca ttagcgccgt
    17461 ctcgagcagt ttagctcaga attctggggt gatgcccacg gtaaaataca gggcttttaa
    17521 ggtcgctttg cccggtgtca actcactgta tcaggtgtaa tgaagtcatt caggcgtaac
    17581 agcaattacg cggagagatg taaagtgaaa tatttcttta tgggcatttc ttttatggtc
    17641 atcgtttggg ccggtacttt tgccctgatg atctaaaagc aaactgtgca atgaaaaaca
    17701 ggagccatca ggctcctgtt tgcatttctg acgacggtgt ttattccgcg ttttcgtgaa
    17761 tatgtttgct gctggcgggt agtaaaccgt cggcacggaa catcgcttta atccctctga
    17821 tggcctgacg aatacggtcg cggttttcaa tcagtgcaaa gcgaacatgc gtatcaccat
    17881 agtcgccaaa gccaatcccc ggcgagacac agaccttcgc ttcgttaagc aatttcttgg
    17941 caaataccag cgagcccatg gcagcatacg gttccggtat tttcgcccag acatacatcg
    18001 aagccttcgg catttcaact atccagcccg cttcatgcag ccctttaacc aatacatcac
    18061 ggcggcgttt gtactgttcg gcaatgtcgc gcacgcactg ttgatcgccc tccagcgccg
    18121 caatcgccgc cacctgcaac ggcgtaaagg tgccgtaatc gtgatagctt ttaatacgag
    18181 ccagggcgct gaccagcgtt ttgttgccaa ccataaagcc gatacgccag cccgccatgt
    18241 tgtagctttt cgacagcgta aagaactcga ctgccacatc gcgtgcaccc ggtacctgca
    18301 tgattgacgg cgctttccag ccatcgtaga cgatatcggc ataggccagg tcgtggacca
    18361 ccagcacatc gtagcgtttc gccagcgcca caaccttttc gaagaactcc agctccacgc
    18421 attgcgcggt tggattcgac gggaagccga ggatcatcat cttcggtttc ggataacttt
    18481 cacgaatggc gcgctccagt tcgttgaaga aatcgacacc ttccaccagc ggcactgagc
    18541 gtacctgcgc cccggcaatc accgcgccat aaatatggat cgggtaactt ggattcggca
    18601 ccagcaccat gtcaccatga tccagcgtcg ccagcatcag atgcgccagg ccctctttcg
    18661 aaccaatagt gacgatggct tctgattccg ggtcgatttc aacgtcgtag cgatcctgat
    18721 accagcggga aatggcgcga cgtaaccgcg gaatgccgcg tgaagtggag taaccatgcg
    18781 tgtccgggcg ctgggccaca gtacataatt tttcgacgat atgcggcgga gtcgcaccgt
    18841 ccgggttacc catgctgaaa tcgataatat cttcgccgcg ccgacgcgca gccattttca
    18901 gttcagcggt gatgttaaaa acgtagggcg ggagacgatc aatgcgcgta aagcgacgtt
    18961 cagggcgagt gtcagccata atttcctcag attaacgtta gcgcccggac cgtccgagcg
    19021 acgctgccac aatggtggct gttttgaaaa tagcctgatt aatttctgtc tgtccagcgt
    19081 tttagaacat ttttatcaat ggctttaaat aaggaactcc acttcaaaaa caggaaattt
    19141 ttctacgcta acaagaaaat taccaccaat tttattaaca ttataatttc aataaattta
    19201 ccagtcagaa gtgcattatc aagagataca ttgctaatac accatttatc tttcaatccc
    19261 cttttaaatt tatggttttt cctcaaaaac ggcctgctgg tcatcagcct tcaggttacc
    19321 tatcatagag gtttaatcct tattcagagt cacccgtgca cgaaatattc aacatgctgc
    19381 tggcggtctt cgatcgggca gcgttaatgc ttatctgcct gttctttctc atccgtatcc
    19441 gcctgtttcg cgagctgttg cacaagtcgg cacactcccc aaaagagttg cttgctgtta
    19501 ccgccatttt ctcgctgttc gccctgttca gcacctggtc cggcgttccc gtagaaggct
    19561 cgctggtgaa cgtacgtatt atcgcggtga tgtccggcgg gattctgttt ggcccgtggg
    19621 taggcatcat taccggcgtg attgcgggta ttcaccggta tttaattgat atcggcggcg
    19681 tgacggcgat cccctgcttt atcaccagca ttctggcggg ttgtatatca ggctggataa
    19741 acctgaaaat ccccaaagca cagcgctggc gcgtcggtat tctcggcggc atgttgtgtg
    19801 agacgttgac catgattctg gtaattgtct gggcaccaac taccgcgttg gggatcgata
    19861 tcgtctctaa aatcggcatt ccaatgatcc tcggtagcgt ctgtatcggc tttattgtgc
    19921 ttctggtgca aagcgttgag ggcgaaaaag aggccagcgc cgcgcggcag gccaagctgg
    19981 cgctggatat cgccaacaaa acgctaccgc tgtttcgcca tgtcaatagc gagtcattac
    20041 gcaaggtctg cgaaattatc cgcgatgaca ttcacgccga tgcggtggcg attactaata
    20101 ccgatcatgt gctggcctat gttggcgtgg gtgaacataa ctatcagaat ggcgatgact
    20161 tcattagccc gactacccgt caggcgatga attacggaaa aatcatcatt aaaaacaatg
    20221 atgaagccca ccgcacacca gagattcatt ccatgctggt gatcccattg tgggagaaag
    20281 gcgttgtgac cggaacgctg aaaatttact actgccacgc gcatcagata acctcgtcat
    20341 tacaggaaat ggcggttggt ctgtcgcaaa tcatctccac gcaactggag gtttcacgcg
    20401 ccgagcagct acgtgaaatg gcaaataagg cagagcttcg cgccctgcaa agcaaaatta
    20461 atccccattt tctgtttaac gctctgaacg ctatttcatc gtcaatccgt ctgaatccgg
    20521 ataccgctcg ccagttgatc tttaatctgt cgcgttatct gcgctataac attgaattaa
    20581 aagacgatga gcaaatcgat atcaaaaaag agctgtatca aattaaagac tatattgcca
    20641 ttgagcaggc ccgctttggt gacaagctga cggttatcta tgatattgat gaagaggtga
    20701 attgctgcat tcccagcctg ctgattcagc cgttggtgga gaacgccatt gtccacggta
    20761 ttcagccttg caaaggtaaa ggcgttgtca ccatcagtgt tgcagagtgc ggaaatcggg
    20821 tacgcattgc ggtgcgagat accgggcacg gcatcgatcc aaaggtgatt gagcgggtcg
    20881 aagcgaatga aatgccgggc aataaaattg gcctgctgaa tgtccatcat cgcgtgaagt
    20941 tattgtatgg cgaggggctg catatccgcc gcctggagcc ggggacggaa attgcgtttt
    21001 acattcctaa ccaacgcacc ccagtcgcct cacaggctac gttattgctt tgagccggag
    21061 tgatattgtg aaagtcatca ttgttgaaga cgaattcctg gcacaacagg aactgagctg
    21121 gctaattaaa gagcacagcc agatggagat tgtcggcacc tttgacgacg gtctggacgt
    21181 gttgaagttt ttgcagcata accgcgtcga cgccattttt ctggatatca atattccgtc
    21241 gctggatggc gtgttgctgg cgcaaaacat cagccagttc gcccataaac cgtttattgt
    21301 gttcatcacc gcgtggaaag aacatgcggt agaagcgttt gaactggagg cgtttgacta
    21361 cattctcaaa ccgtatcagg agtcacgtat taccgggatg ctgcaaaaac tggaagcggc
    21421 ctggcaacaa cagcagacca gcagtacgcc tgccgcgacg gtaacgcgtg agaatgacac
    21481 cattaatctg gtgaaagatg agcgaataat cgtcacgcca attaacgata tctattacgc
    21541 cgaagcgcac gagaaaatga cctttgtcta tacgcggcgt gaatcctacg taatgccgat
    21601 gaacattacc gaattttgca gcaaactgcc gccgtcgcat tttttccgct gccatcgctc
    21661 attttgtgtc aatctgaaca aaatacgcga aatcgaaccg tggtttaata acacctacat
    21721 tctgcgactg aaagatctgg attttgaagt gccggtcagc cgcagcaaag tgaaagaatt
    21781 tcgccagtta atgcatcttt aatcgggaac tttcatgaaa gcaccaggct tgcccgccga
    21841 tcaacaattt ttcgccgatc tgttcagcgg cctggtgctt aacccgcaac tactggggcg
    21901 cgtctggttt gccagccagc ctgcctcgtt accggtgggc agtttatgta ttgattttcc
    21961 ccgtctggat atcgtgctgc gcggcgaata cggcaacctg ctggaagcaa agcagcagcg
    22021 aatggtggaa ggagaaatgc tgtttattcc ggcacgcgcg gctaatttac cgatcaacaa
    22081 caaaccggtg atgctgttaa gcctggtgtt cgcaccgacc tggcttgggt tatcgtttta
    22141 cgatagccgc accacgtcgt tgttgcatcc tgctcgccag atccagcttc ccagcctgca
    22201 acgcggtgaa ggtgaagcga tgcttaccgc cctcactcat cttagccgtt cgccgctgga
    22261 gcagaatatc attcagccac tggtgttaag tttgctgcat ctttgccgca acgtggtgaa
    22321 tatgccgccg ggtaattcgc aaccgcgcgg cgattttctc tatcacagca tttgtaactg
    22381 ggttcaggat aattataccc agccgctcac ccgcgagagc gtggcgcagt tttttaatat
    22441 cacgcccaat catctgtcaa aactgtttgc tcagcatgga acgatgcgtt ttatcgagta
    22501 tgtgcgttgg gtgcgaatgg cgaaggcgag gatgattttg cagaaatatc atctgtcaat
    22561 tcatgaagtg gcacagcgtt gcggttttcc ggatagcgac tatttttgtc gcgttttccg
    22621 gcgtcagttt ggtctgacgc cgggagagta cagcgcccgt tttcagggct aacgtcagaa
    22681 ggttaattct gtttccagca gcgtcaggat actttgtgca tcttgcgcgg caaacaacga
    22741 ctggcggaag tttttattca ccagtttacg cgccagctgc gagaagactt tcacatgatt
    22801 catcccttcg ttagcaccca gcgtcagcat gatcaccagt tcgacttcgc ccatttctga
    22861 ctgccagtca atcggtttcg ccagccgggc aatgctgata ctggaatgac ggatccactg
    22921 agatttggtg tgcgggatcg ctacgccaaa accaacgccg gtggtaacaa tctcttcccg
    22981 ctgccagaca tcttcttcca gctcaaacgg atgttcagtg cgcccgttaa cgccgaggtt
    23041 gccgcacagg aactggatcg cctgctcttt attgctaaaa tcctgatcaa caaagatatt
    23101 ctccagcgcc agcagtgggc gaacgtcttc ttccggcgta aaggcggtga gtaacgcttc
    23161 aatttcctgc gcactgcggc attcacatgc ctgacgcgcc agttcccgac acgcctcgct
    23221 atccagttga cgaagctggc ttttcaccgc cggaatacgc gggctactca tactcagctc
    23281 atccaggccc agcccaagca gtagcggcag ataacggctt tcaccgccca gttcaccgca
    23341 aatgcctacc catttgcccc gctgatgcgc agtggtaact atttgctgca acatgcgcag
    23401 gaacgatggc gtaatcgggt tatatagcgg cgatacgcgc gggttattac gatcgaccgc
    23461 atacagatac tgggtcatat cgttggagcc gatactgaag aaatcgacct catcgcagaa
    23521 gtggtcgatg atgtagcaca ccgacggcac ttccaccatg atcccaagcg taatcgtctc
    23581 tgcatgacgc aggccatcgc gcttaagctc aacgatcgct ttttggatct cgcccttcac
    23641 ccataagatc tgatcgagac tgtggaccat cgggatcatc aactgggcgt tgccaaaact
    23701 ggcggcgcgc aaaatcgccc gtagttgagt gcggaacagg ccagcaaatt ccgggtaaat
    23761 acgtaccgcg cgatagccga ggaacgggtt ctcttcctgg ggaatattca gataaggaat
    23821 gcttttatcg ccaccgatgt ccattgtgcg gaagataatc ggcttgtcgc ccgctgccag
    23881 tagcacctgc tggtaggctt caaattgctc ctgctcgtcc ggcgcgctgt cgcgatccat
    23941 atagagcatt tcagtacgga acagtccaac gccttccgcg ccgttggcaa acgcgcctgg
    24001 cgcttccaga gcggtgccga tattcgccgc aatatcaata cgcttgttat cacgggaata
    24061 ggccagctgc gcggcggcct gcgcctgttg tttttggcgt ttatccgcca gcgtctgtgc
    24121 gacctgataa taaccgctca ccgcgtcatt cgggttaatc gccagcacgc cgcactgggc
    24181 gtcaagcccg ccggttgccc ggcataacgg gcaatcgcat ccagcggcag gccgctcagt
    24241 accgggatcg ccgaggcgcg ggccagaatc agggtatgcg aggtgcgccc agttttctcc
    24301 agaatcatgc ctgcaagatt ttttaaatcg aggctcaaaa actggcttgg ggttaaatcc
    24361 tcggctacca gaatagtcgg tttttccagc accagattgt tgcgcggctt cagttccggc
    24421 caggtgatat gcagcaactg ttcgctaata tcgcgaatgt cgctaacacg ttcgcgcaga
    24481 taatcactgg cagaagcaga aagtttggcg caaacctgct ccatattgct gatgatcgcc
    24541 gcccccagcc cttgatgctg ttctgtcatc agacgacgga tattgcccgc gaattcatca
    24601 tcctgaatca gcgacaaatg ggcgctaagg atagttttgc tttcgccgtc acgctcacgc
    24661 aattgctggt tcagttgctc ggcaagcgtt gcaaggctgt gctccagccg ggtggaatct
    24721 tgcgcactgg cggggattgc ccgataactg tcgaggctgt cgctttgtaa cagggtcagc
    24781 gtacccacgc cgacgctgct tgccagcaca ttgccgtaca gtaaatccgg gttcaggcgg
    24841 cttaatgaac gcggcagcgg atgcgccgtc agttctgcct gcgttggctg gatgctgtcg
    24901 ctgtcgataa agcgcacctg gatgtactct tccaacacgc gcttcgcctg ctcttcatcg
    24961 ctgccgctaa tgttcaggct gcaactgtca ttaaataaag taccggtgcc aatcagcgcc
    25021 agcgagcttt tcgcatcggc ctttgcgttc tggcgatggt tgataaaggt gatttcgctt
    25081 tgccactggc tgcactgttc tttaagttcc cacgccggac gagcatgaag accgtttggc
    25141 aaaggacaga gaaattgaat cgttaacata accgctccgg gttaatcagg agatcatctg
    25201 aaatccgtca gttgaacaac cgtctcacgc gtaagacgtt taataagggc agataaaagc
    25261 tgctgcatct gcaaaatgtc acggcaatcg gcaatcggca atcgatgcgg cgcaatgtcc
    25321 gtggcgggtt gctggcccca tcaccactgt aggcacgccg gtgccggtta agtgcaccgc
    25381 tccgccgtcc gtgccgccgt tgctgaacat atctgcctgt aacggcacgc caatttctgc
    25441 cgccacggtt tcgatccacg cggtaagttt tggcggcgca atcagcgact tgtcgcttaa
    25501 caccagcatc ggcccgttac aaatctgacg atggttagcc gcgccataat caaagttttt
    25561 cgcccagcag gcggtatcaa gcacaatggc gacatccggc gacaccgcgc gggtggcagt
    25621 ttgcccgccg cgtaccccca cctcttcgct ggaactggcc accagccaca cttccgcagg
    25681 cagttcagcg ctgtgtagtt cgcgcagtaa cgtcaccagc aggtagcaac cgaggcggtc
    25741 atcaaaggct ttccccatca cccgctggtg agggagaacc tgaaaagttg tatcaaaggt
    25801 gacgcgatcg cctggacgaa ttcccgcctg catcacttcg tcatacgagc gcgtaccaat
    25861 atccacgcgc atggcgctga cgtcattccc ctgccggtcg ccgtcaagca ggcctggaat
    25921 tttgcactct tcacgggtgg tgatgcgcac cggctgcagc tggcgggcag ccatgcgcac
    25981 gttgccaacc ggcagcacat caattgcccc ttcgcgggag atgctgcgca ccataaatcc
    26041 cacttcgtcc atatgggcgc agatcatcac cttcggccct gtcgattcat tgaggcggat
    26101 ccgcaccgat cccagaccat caaatcgcac ttctttttgc aggcgatccg cttcttccag
    26161 caggatctgc cgcacttcct gttccgagga ggcgatcgca tctgcctcgc tcaacgcttt
    26221 taatagcgat aaatccatta tgcctctccc gtgagcaaca ctgttttcgg catggcgtag
    26281 agcacttctg cgccttgcgg ggtaaccagc acaacatctt cgatgcgcac gcccccttgc
    26341 cctggcaaat aaatccccgg ctccacggtc agcaacatgc ctggctgtag cgtcttggtc
    26401 ccccgcggtg aaaaacgcgg atcttcatgg acttcaatgc cgatagcgtg accagtgtta
    26461 tgaccgaaat agtcgccaaa tccagcctcg gtaatgaccc ggcgcgcggc gtcgtcaatc
    26521 tgctggcagc gcacgccggg gcgaattgca gagattgccg cgagctgtgc ctgcaggaca
    26581 atctgataga cgtcaaacag cgggtgagat tcggcgctca ccccttcgcc attcaccagc
    26641 aaggtgcgcg tcatatcaga gcagtagccc tgatacagcg caccaaaatc gagagtgaca
    26701 aactcgcccg ctgcaacaat cttgtcgctg gctttgccgt gcggcagcac cccgcgccag
    26761 ccgctggcga caatggtgtc aaaagaggct ttttctgcgc cctgctggcg cataaaccac
    26821 tccagttcag cggctatctc gcgctcgctc atccccgcct gaataaagcg gcgaatatgc
    26881 tccgctccgc gatcggcaat cccacaggcg aggcggatta tctccacctc ctctggcgtt
    26941 ttgatttgcc gcagcacatc cggcgtggcg ctaaccagtt tcgcattgag ttcagacttc
    27001 cagcggtgcg ctgtttccca actcacctgc tggccttcaa aaccgagcgt ttgcaactgc
    27061 tcatcggcaa tgatttgatt gacgatagtg gtaagcgtgt tcgtcgcgtc aagcaaatgc
    27121 agctggtagc cttgcgcacg ggcttccacc tcaacgaaat agcgcgaatc taccagaatg
    27181 tgcgcacttt cacggctaat aaccacatag cctgatccgg tggagatccc cagatgcggc
    27241 tgtttgttct gccgtgagga gagaagcact gcatccagtt gttgcgcctt aagccagtcg
    27301 cgcagcgaag cgagtaatgt catctggatt ttccttctta caggctatcg attaacaatt
    27361 tgcctttacg gaacatcatc agacgcagga acaccaccat cagcgcagtt atgactgccc
    27421 ccagcgcgat ccccgccata tagacgccaa ggttagtgac cagcggccat gcccagatag
    27481 cggattccgg gaaccattgc actgcgccca gccagacagc ggcggttgag ccgacaatcg
    27541 cgccgaccat atacgacgga atggcggtga tggggctttc cagcgcaaac ggaatcgcac
    27601 cctcactaat ccccataaag gcaaggaaca tcgcggtctt accctgcgga taaagttgag
    27661 cgttgaacag gcgtttgccg gttaaacgac ggtcaataat ggtcgccagc cccagaccaa
    27721 tcggaggaat aacgatagcg atagaacgag cggtgaccgg taatacgtgg tcagtggtaa
    27781 agctgaaggc aacgaaacct gcggctttgt tgatcgggcc accaaggtcg attgctgtcg
    27841 ccgcggcgat ccccattgcg tacatcagcg cgcccttctc acctgcggca gtcagcacgg
    27901 tacggatacc gccgttgatc cagccgccaa agggggtaat gacgtagtac atcgccagca
    27961 tgacaaaaat ggcggaaaga atcggtagca aaaatgtggt tttgaacgct aacaggaaat
    28021 ccggtaactg gattttctgg ttcatccact tcacaaggta acccgcgacg ataaaaataa
    28081 tcagcgcacc aatgaaggtg gacggcaccg gcgaagaggt cgcccattgc atagtgctgg
    28141 gatcgaagtt cagcagttgc gtcggctggg tagacatcaa gccgccgata aaaccagccg
    28201 ggaacgccag tttgccaccg atagagttcg ccacaaaagc agcaaacatc ggaatggcaa
    28261 aaccaaacaa cacgccgccg aaggactgcg acagccaggc aaatttcagt aaggagaggt
    28321 cgaaaccgga gaatttcccg ctattaagag catccatgat gccgatctca gcaggaattt
    28381 taagccagct ataagcaatc agctggctga aagcgaggat cacaccgccc ataattaagg
    28441 tcggcaccat gcgtgaaatc cctgacatca catgctgcgg gagttcaccc cagaagctgc
    28501 ttttagaggc ctgcggattc ttaactgccg ctgccgcacc ggatgcgcca ggcacaacgg
    28561 ttgcactgcg ttttttaatg gccataacaa ttatccctgt cgaatattac tgttgttcag
    28621 aggcaatcat ctcttcgatt tctttgatga tgcccgcagc gtttttaatt gcgtcctgca
    28681 aagtgatttc ataaacgtcg cgtgattcga aacgctcatt atcttccggg gtaactgcca
    28741 cggagtggat gatgatggtt gcttcggcga tatcctgcgc cgtcaggcga ttctggatac
    28801 cgtccgcgcc ctgggtttca attttcactt cataaccggc ttctaccgcc gcttcttcca
    28861 acgcctgagc ggccataaag gtgtgagcta ggcccattgg gcaggcacat aaggcaatca
    28921 gtttcttact catcgttaat tcctcattca gtgatagtta acgagtgaaa ttatgaacgt
    28981 gcaaaacaaa tcgccgttac cagacaaata atgcatttac tggagaatta atcccgctgt
    29041 acggaagtgt gacgcaggtc ggccttgtga ggggacacaa agaaaaattg aattaactgt
    29101 atgatttaaa agattatcgg gagagttacc tcccgatata acaggaagga tttacagaat
    29161 gtgccctaag gtctggcgta aatgtgcacc ggaaccgaga agacccggat tgtcatggac
    29221 gatgagatac accggaatat catggacata ttctttaaag cgccctttat cttcaaatgc
    29281 agcacggaaa ccagaggctt tgaagaactc aaggaagcgc ggcacgatac cgcccgcaat
    29341 aaacacgccg ccaaatgtcc cgagattgag cgccagattg ccgccaaaac ggcccataat
    29401 gacgcaaaac agcgacaacg cgcggcggca atcggtacag ctgtcagcca gcgcgcgttc
    29461 ggtaatatct tttggcttga gattttctgg caggcggttg tcagctttca caattgcgcg
    29521 atacaaattc accagcccag ggccagaaag cacgcgctcc gccgaaacat gaccaatttc
    29581 cgcacgcaat atttcgagga taatggcctc ttcttcacta ttcggcgcaa aatcaacgtg
    29641 accgccttcg cccggcaagc ttacccaacg cttatcgaca tggaccagat gcgcaacccc
    29701 aagccctgtt ccggcaccgt aaaccgcaat aggtttacct tctaccggtt ctgcgccacc
    29761 aaactgaatc agatgctctt ttttcagcat cgggatcgcc atcgatacag cggtaaaatc
    29821 gttaataatt tccagatggc taaaaccgag attctttttc atttcggcaa ttgagaacgc
    29881 ccaggtatgg ttggtcattg ccacccagtc accggtaatt gggcaagcga tggcaataca
    29941 gccgtctttc acctcgacct tatgttcttc aagataaacg cgaatgaccg cttcgaggct
    30001 ggggtaatca agccctgaat aggtcttagc ctgcgagatt tcaccactgg caatatcaca
    30061 cagagcaaga cgtgcgttgg tgccgcccac atcaccgact aatgcatact ttatcattct
    30121 tcaactgctc cgctaaagtc aaaataattc tttctcacac tgtaaatacc tgggggcata
    30181 acaacaacgc cggaaaggca ggctccctgt aaatatcgat ctgggtcaca catttacttt
    30241 atcgtttcag caccaattgc agcgatgcct ttttgcaagc tgggcaaact aagtatctga
    30301 ccccgcataa ggaatagaac atgctccatc cgcgagccag aaccatgttg ttattatcgc
    30361 tccccgccgt ggcaattggg attgcgtcca gtcttattct gattgtggtg atgaaaatcg
    30421 cctcggtatt acagaatttg ctctggcaac gactgccggg aactctgggg atagcccagg
    30481 attcacctct ctggatcatc ggtgtattaa cgctaacggg tattgcggtg gggttggtta
    30541 tccgtttcag ccagggtcat gccggaccag accccgcctg tgaaccgctg atcggcgcac
    30601 cagttccgcc ctctgcgcta ccaggactta tcgtagcatt aattctcggt cttgctggcg
    30661 gcgtcagcct ggggccggaa catccgatca tgaccgtcaa tatcgccctt gccgtcgcca
    30721 ttggcgctcg tctgttaccg cgcgtcaacc gaatggagtg gactatttta gcctctgccg
    30781 gaaccatcgg cgcgctgttt ggcacacctg ttgcagcggc gttgatattt tcgcaaacct
    30841 taaatggcag tagtgaagtt ccgctatggg atcgtctctt tgcgccgtta atggcggcag
    30901 cagctggtgc actaactacc ggattatttt tccatcccca tttttcactg cccattgcgc
    30961 attacggaca gatggaaatg accgatattc tcagcggtgc aattgtcgcg gcgattgcca
    31021 tcgcagcagg gatggtcgcc gtatggtgct taccacggtt gcacgcgatg atgaatcaaa
    31081 tgaaaaatcc ggtgctcgtg ctgggtattg gcggatttat tctcggtatt ctgggggtta
    31141 ttggtggacc agtttcgctg tttaaagggc tggatgagat gcagcagatg gtggcaaatc
    31201 aggctttcag caccagcgat tactttttgc tagcggtaat taaacttgcc gccctggtcg
    31261 ttgctgccgc cagtggcttt cgcggtgggc gaatcttccc ggcagtgttt gtcggcgtgg
    31321 cattagggtt gatgctgcat gagcacgtac ccgccgtacc agcggcaata accgtttctt
    31381 gcgctattct cggcatcgtg ctggtggtaa cacgcgatgg ctggttaagt ctttttatgg
    31441 cggcggtcgt tgtacccaat accacattgc taccgctgct ctgtatcgtc atgcttccgg
    31501 catggctgtt attagcaggt aagccgatga tgatggtcaa tcgtccgaag caacagccac
    31561 cccacgataa cgtttagcaa aaaatgctct cctttatgat ttaagagtta tggcgatgat
    31621 acggggcttt acctccccgt aatattgcgt taacaggccg ctgacggctt cgatcgtgaa
    31681 ggagaataac aatgttcagg tcactgtttc tggcggccgc cctgatggca tttaccccgc
    31741 ttgcagcaaa cgcaggtgaa atcaccctac tgccatcaat caaattacaa attggcgatc
    31801 gcgatcatta cggtaattac tgggacggtg gtcactggcg cgaccgtgac tactggcatc
    31861 gcaattatga gtggcgcaaa aaccgttggt ggcgtcatga taatggctat catcgtggct
    31921 gggataagcg taaagcgtat gagcgtggct atcgtgaagg ctggcgcgat cgtgacgatc
    31981 atcgcggaaa aggccgcgga catggacacc gccattaaac acattcgcca atggagcaca
    32041 atgcctgatg cgacgctagc gcgtcttatc aggcctacaa accggatctt taacgcgtag
    32101 ggcggataag gcgtttacgc cgcatccgcc aatagtgcca gatgcgacgc tcattcaact
    32161 acaatcccag cgccgtcccc accaacaacc agatattcag cgccacgacc agcactacaa
    32221 tcacccagcc tgtctgtttt acgcgtttgc tgttcaccag atcgcccatc aacttgctgt
    32281 cactggtgaa aatcagcagt ggaaccagcg ccagggcgat accaaaactt aacagcacct
    32341 gactcataac cagaatccgt gtcggatcta atcccatcag aatgacaata aatgacggca
    32401 gcatggtgac tgtacgacgc acccacagcg ggatatggaa gcgaatgaac ccctgcatca
    32461 ccacctgccc tgccagtgtc cccactaccg ttgaggacag tccggcagca accagactta
    32521 acccaaagac cgttgccgca gcatggctta acagcggttg cagcgtcaga taagcctcat
    32581 caagatcggc aacaccagta tgaccagaaa agtggaacgc cgccgcagct gtagccatca
    32641 tcgccagatt gacaaaaccg gcaatagtca tggcgatagc cacatcccat ttggtggcgg
    32701 aataacgttg ttgacgcgaa ccgccatgta aatgctgagt gagcgaggag tgcaaataaa
    32761 tcacatgcgg cataatcgtc gcccctaaca cgcctgctgc caggaagacc gcttccgaag
    32821 taggtaaact cgggatcacc attcctttac ccagctgcgc caggttaggc tgggagaaaa
    32881 tcaactcgac aatgtaagcc gcggcaacaa acaacagtaa cccgccaatc actttctcca
    32941 gcggtttttg cccgcgacgt tgcagcatta aaatcaggaa agtcgcgatc cccgtcagca
    33001 ccgcgccctg caacaacgaa acaccaagaa tgagtttaaa accgatcgcc gcaccaataa
    33061 attccgccag gtcggttgcc atcgcaataa tttctgcctg aacccaatag aaccacacta
    33121 cgggacgcgg atagtgatcg cgaatctgct ccgccagatt tttaccggtg gcaatcccta
    33181 gtttggcaga gaggatctga atcagcatcg ccatcaggtt ggcccaaacg acaacccaca
    33241 gtagctgata gccgaagctg gcacccgcct gaatattggt cgcaaagtta ccgggatcga
    33301 tataaccaat cgccgcaatg aacgcaggtc ccattaatgc gagcctcatc ttgcgcgccg
    33361 cccgtccgct gctactctca acgcgatagt tcgtcatctt gtgcctctaa aacatagcct
    33421 ttgctatgtt tcatgctatg ataaacgaga atgattatca aattcattta aatggattgt
    33481 ggtgatttct gtgatagacc aggattatga ctacgaaaag attgatgact tgaatgttat
    33541 ggttatgttt aatgttagca catttacata actttcagct tccatacaca acatagcaga
    33601 aatgtatgac agatcactat ttttgaagcc tgtcacagga cgtcattata gtgtgtgtca
    33661 gatctcgttt tccttaacca tgttacatag aatgtgcacg gaaatttaac ctgcctcata
    33721 tttggagcaa atatggaccg cgtccttcat tttgtactgg cacttgccgt tgttgcgatt
    33781 ctcgcactgc tggtaagcag cgaccgcaaa aaaattcgta tccgttatgt tattcaactg
    33841 cttgttatcg aagtgttact ggcgtggttc ttcctgaact ccgacgttgg tttaggcttc
    33901 gtgaaaggct tctccgaaat gttcgaaaaa ctgctcggat ttgccaacga agggactaac
    33961 ttcgtctttg gtagcatgaa tgatcaaggc ctggcattct tcttcctgaa agtgctgtgc
    34021 ccaatcgtct ttatctctgc actgatcggt attctccagc acattcgctt gttgccggtg
    34081 atcatccgcg caattggttt cctgctctcc aaagtcaacg acatgggcaa actggaatcc
    34141 tttaacgccg tcagctccct gattctgggt cagtctgaaa actttattgc ctataaagat
    34201 atcctcggca aaatctcccg taatcgtatg tacaccatgg ctgccacggc aatgtccacc
    34261 gtgtcgatgt ccatcgttgg tgcatacatg accatgctgg aaccgaaata cgtcgttgct
    34321 gcgctggtat tgaacatgtt cagcaccttt atcgtgctgt cgctgatcaa cccttaccgt
    34381 gttgatgcca gtgaagaaaa cattcagatg tccaacctgc acgaaggtca gagcttcttc
    34441 gaaatgctgg gtgaatacat tctggcaggt ttcaaagttg ccattatcgt tgccgcgatg
    34501 ctgatcggct ttatcgccct gatcgctgcg ctgaacgcac tgtttgccac cgtgactggc
    34561 tggtttggct acagcatctc cttccagggc attctgggct acatcttcta tccgattgca
    34621 tgggtgatgg gtgttccttc cagtgaagca ctgcaagtgg gcagtatcat ggcgaccaaa
    34681 ctggtttcca acgagttcgt tgcgatgatg gatctgcaga aaattgcttc cacgctctct
    34741 ccgcgtgctg aaggcatcat ctctgtgttc ctggtttcct tcgctaactt ctcttcaatc
    34801 gggattatcg caggtgcagt taaaggcctg aatgaagagc aaggtaacgt ggtttctcgc
    34861 ttcggtctga aactggttta cggctctacc ctggtgagtg tgctgtctgc gtcaatcgca
    34921 gcactggtgc tgtaagacca tacataaaaa agccggggat aattccc
//
LOCUS       DAJVUN010000020        34864 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.020, whole genome shotgun sequence.
ACCESSION   DAJVUN010000020 DAJVUN010000000
VERSION     DAJVUN010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34864
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.020"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(138..539)
                     /gene="nikR"
                     /locus_tag="OQQ76_000768"
     CDS             complement(138..539)
                     /gene="nikR"
                     /locus_tag="OQQ76_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-responsive transcriptional regulator
                     NikR"
                     /protein_id="HCS1967361.1"
                     /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA
                     TQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK
                     GDMGDVQHFADDVIAQRGVRHGHLQCLPKED"
     gene            complement(545..1351)
                     /gene="nikE"
                     /locus_tag="OQQ76_000769"
     CDS             complement(545..1351)
                     /gene="nikE"
                     /locus_tag="OQQ76_000769"
                     /EC_number="7.2.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikE"
                     /protein_id="HCS1967362.1"
                     /translation="MTLLNVSGLSHHYAHGGFSGKHQHQAVLNNVSLTLKSGETVALL
                     GRSGCGKSTLARLLVGLESPSQGNISWRGESLAKLNRAQRKAFRRDIQMVFQDSISAV
                     NPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRV
                     CLARALAVEPKLLILDETVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF
                     CQRVMVMDNGQIVETQAVGDKLTFSSDAGRVLQNAVLPAFPVRRRATEKV"
     gene            complement(1348..2112)
                     /gene="nikD"
                     /locus_tag="OQQ76_000770"
     CDS             complement(1348..2112)
                     /gene="nikD"
                     /locus_tag="OQQ76_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikD"
                     /protein_id="HCS1967363.1"
                     /translation="MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSL
                     TCAATLGILPAGVRQTAGEILADGKAVYPCALRGIKIATIMQNPRSAFNPLHTMHTHA
                     RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
                     FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGK
                     IVEQGDIETLFNAPKHTVTRSLVSAHLALYGMELVS"
     gene            complement(2112..2945)
                     /gene="nikC"
                     /locus_tag="OQQ76_000771"
     CDS             complement(2112..2945)
                     /gene="nikC"
                     /locus_tag="OQQ76_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikC"
                     /protein_id="HCS1967364.1"
                     /translation="MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSR
                     LLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGR
                     VDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
                     RQREFVLASRLSGAGYVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVT
                     APTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHA
                     H"
     gene            complement(2942..3886)
                     /gene="nikB"
                     /locus_tag="OQQ76_000772"
     CDS             complement(2942..3886)
                     /gene="nikB"
                     /locus_tag="OQQ76_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikB"
                     /protein_id="HCS1967365.1"
                     /translation="MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNL
                     PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATL
                     ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV
                     YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLND
                     KQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV
                     IQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA"
     gene            complement(3886..5460)
                     /gene="nikA"
                     /locus_tag="OQQ76_000773"
     CDS             complement(3886..5460)
                     /gene="nikA"
                     /locus_tag="OQQ76_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter, nickel/metallophore
                     periplasmic binding protein"
                     /protein_id="HCS1967366.1"
                     /translation="MLSTLHRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLY
                     TPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKLSNGEPFD
                     AEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRP
                     FRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITF
                     NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALN
                     TAKTPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPRQYDP
                     QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGAD
                     VSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADK
                     PLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYA
                     PIATEIPFEQIKPVKP"
     gene            complement(5543..6157)
                     /gene="acpT"
                     /locus_tag="OQQ76_000774"
                     /pseudo
     CDS             complement(5543..6157)
                     /gene="acpT"
                     /locus_tag="OQQ76_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001382495.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase AcpT"
     gene            complement(6212..7261)
                     /locus_tag="OQQ76_000775"
     CDS             complement(6212..7261)
                     /locus_tag="OQQ76_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS1967367.1"
                     /translation="METPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFA
                     IVLNPLVTWFIRRGVQRPVAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELT
                     RKLFKLQEMLPFLNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVF
                     MLFEVRHVPYKMRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLALM
                     GVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIG
                     NILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKL
                     AILLGPGRPKSRLPG"
     gene            7393..8610
                     /locus_tag="OQQ76_000776"
     CDS             7393..8610
                     /locus_tag="OQQ76_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417930.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1967368.1"
                     /translation="MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYV
                     HDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVFGLCGCFLSGLGYLT
                     AGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTY
                     GAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLG
                     RVWLYGMALALASAGFGVIATFITLFYDAKSWDGAAFALTLFSCAFVGTRLLFPNGIN
                     RIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVP
                     QQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAGLVAIALLLTWRLKK
                     RPPEHVPEAASSS"
     gene            complement(8602..9171)
                     /gene="dcrB"
                     /locus_tag="OQQ76_000777"
     CDS             complement(8602..9171)
                     /gene="dcrB"
                     /locus_tag="OQQ76_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage sensitivity protein DcrB"
                     /protein_id="HCS1967369.1"
                     /translation="MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVN
                     LLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKR
                     LEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
                     ITLPADDQQKAQTTAENIINTLVIQQVLR"
     gene            complement(9244..9909)
                     /locus_tag="OQQ76_000778"
     CDS             complement(9244..9909)
                     /locus_tag="OQQ76_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HCS1967370.1"
                     /translation="MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTW
                     GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALA
                     HFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFF
                     IAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINAL
                     QAS"
     gene            10130..10375
                     /gene="tusA"
                     /locus_tag="OQQ76_000779"
     CDS             10130..10375
                     /gene="tusA"
                     /locus_tag="OQQ76_000779"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HCS1967371.1"
                     /translation="MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD
                     DPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG"
     gene            complement(10477..12675)
                     /gene="zntA"
                     /locus_tag="OQQ76_000780"
     CDS             complement(10477..12675)
                     /gene="zntA"
                     /locus_tag="OQQ76_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase
                     ZntA"
                     /protein_id="HCS1967372.1"
                     /translation="MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSSPTLSEN
                     VSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVES
                     AVQKAGYSLRDEQAADEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATT
                     LVGLYPIAHQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG
                     WAASRARQGVSALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL
                     SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIE
                     EAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGC
                     PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTA
                     IHPATGISESELLTLAAAVEQSATHPLAQAIVREAQVAALAIPAAESQRALVGSGIEA
                     QVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAA
                     TAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEDKVKAVTELNQHAPLA
                     MVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANI
                     RQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR"
     gene            complement(12749..13375)
                     /locus_tag="OQQ76_000781"
     CDS             complement(12749..13375)
                     /locus_tag="OQQ76_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HCS1967373.1"
                     /translation="MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQ
                     APMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSF
                     FWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALS
                     AFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYL"
     gene            13516..13875
                     /locus_tag="OQQ76_000782"
     CDS             13516..13875
                     /locus_tag="OQQ76_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HCS1967374.1"
                     /translation="MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVV
                     VSNKREKPINDRRSRQQEVTPAGASMRYEASFKPQSGGMEQTFRLDAQQYHALTVGDK
                     GTLSYKGTRFVSFVGEQ"
     gene            complement(13878..14147)
                     /locus_tag="OQQ76_000783"
     CDS             complement(13878..14147)
                     /locus_tag="OQQ76_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 family protein"
                     /protein_id="HCS1967375.1"
                     /translation="MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMH
                     GMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLVWQKKFKVKK"
     gene            complement(14137..14733)
                     /gene="rsmD"
                     /locus_tag="OQQ76_000784"
     CDS             complement(14137..14733)
                     /gene="rsmD"
                     /locus_tag="OQQ76_000784"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase"
                     /protein_id="HCS1967376.1"
                     /translation="MKKTNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF
                     NWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN
                     ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV
                     ENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD"
     gene            14883..16376
                     /gene="ftsY"
                     /locus_tag="OQQ76_000785"
     CDS             14883..16376
                     /gene="ftsY"
                     /locus_tag="OQQ76_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HCS1967377.1"
                     /translation="MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEP
                     AKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETP
                     EPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
                     AAEAAEEAVMVVPPVEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLF
                     RGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMG
                     EILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFELQGKSVMLAAGDTFRA
                     AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSH
                     LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDG
                     TAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED"
     gene            16379..17047
                     /gene="ftsE"
                     /locus_tag="OQQ76_000786"
     CDS             16379..17047
                     /gene="ftsE"
                     /locus_tag="OQQ76_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HCS1967378.1"
                     /translation="MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTL
                     LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI
                     PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL
                     ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGG
                     VGHE"
     gene            17040..18098
                     /gene="ftsX"
                     /locus_tag="OQQ76_000787"
     CDS             17040..18098
                     /gene="ftsX"
                     /locus_tag="OQQ76_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HCS1967379.1"
                     /translation="MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKP
                     VNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAA
                     TQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGG
                     ALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALT
                     GLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGG
                     ALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTNFDINGLSFDECLLLLLVCSMIG
                     WVAAWLATVQHLRHFTPE"
     gene            18343..19197
                     /gene="rpoH"
                     /locus_tag="OQQ76_000788"
     CDS             18343..19197
                     /gene="rpoH"
                     /locus_tag="OQQ76_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HCS1967380.1"
                     /translation="MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYH
                     GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE
                     LGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWE
                     EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK
                     KLRAAIEA"
     gene            19468..20571
                     /gene="livJ"
                     /locus_tag="OQQ76_000789"
     CDS             19468..20571
                     /gene="livJ"
                     /locus_tag="OQQ76_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     substrate-binding protein LivJ"
                     /protein_id="HCS1967381.1"
                     /translation="MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQ
                     EFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMITPAATSPELTARGYQLILRTTGLDSDQGPTAAKYILEKVK
                     PQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENID
                     FVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD
                     QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDT
                     VMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK"
     gene            complement(20770..21153)
                     /gene="panM"
                     /locus_tag="OQQ76_000790"
     CDS             complement(20770..21153)
                     /gene="panM"
                     /locus_tag="OQQ76_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase autocleavage activator
                     PanM"
                     /protein_id="HCS1967382.1"
                     /translation="MTLTIIRLENFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARF
                     NERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGV
                     EDRGVMTAFMQALGFTAQQGGWEKR"
     gene            21577..22686
                     /gene="livK"
                     /locus_tag="OQQ76_000791"
     CDS             21577..22686
                     /gene="livK"
                     /locus_tag="OQQ76_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter substrate-binding protein LivK"
                     /protein_id="HCS1967383.1"
                     /translation="MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDM
                     EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK
                     PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID
                     FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYD
                     QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGA
                     NTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK"
     gene            22734..23660
                     /gene="livH"
                     /locus_tag="OQQ76_000792"
     CDS             22734..23660
                     /gene="livH"
                     /locus_tag="OQQ76_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010436488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivH"
                     /protein_id="HCS1967384.1"
                     /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG
                     EVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNS
                     KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVI
                     WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV
                     AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS
                     TEYKDVVSFALLILVLLVMPTGILGRPEVEKV"
     gene            23657..24934
                     /gene="livM"
                     /locus_tag="OQQ76_000793"
     CDS             23657..24934
                     /gene="livM"
                     /locus_tag="OQQ76_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     permease LivM"
                     /protein_id="HCS1967385.1"
                     /translation="MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIR
                     WQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVA
                     WPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY
                     GLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG
                     PNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSL
                     FVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQ
                     GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGG
                     LMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA"
     gene            24931..25698
                     /gene="livG"
                     /locus_tag="OQQ76_000794"
     CDS             24931..25698
                     /gene="livG"
                     /locus_tag="OQQ76_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivG"
                     /protein_id="HCS1967386.1"
                     /translation="MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGK
                     TTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL
                     VAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR
                     RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM
                     GISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA"
     gene            25700..26413
                     /gene="livF"
                     /locus_tag="OQQ76_000795"
     CDS             25700..26413
                     /gene="livF"
                     /locus_tag="OQQ76_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivF"
                     /protein_id="HCS1967387.1"
                     /translation="MEKVMLSFDKVSAHYGKIQALHEVSLHINQSEIVTLIGANGAGK
                     TTLLGTLCGDPRAASGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA
                     MGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLL
                     LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS
                     DTGDALLANEAVRSAYLGG"
     gene            26810..28126
                     /gene="ugpB"
                     /locus_tag="OQQ76_000796"
     CDS             26810..28126
                     /gene="ugpB"
                     /locus_tag="OQQ76_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     substrate-binding protein UgpB"
                     /protein_id="HCS1967388.1"
                     /translation="MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSL
                     AQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK
                     PVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
                     DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDG
                     TDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLAN
                     IREYAKFNYGVGMMPYDGDAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKP
                     ENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGN
                     MPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS"
     gene            28224..29111
                     /gene="ugpA"
                     /locus_tag="OQQ76_000797"
     CDS             28224..29111
                     /gene="ugpA"
                     /locus_tag="OQQ76_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpA"
                     /protein_id="HCS1967389.1"
                     /translation="MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSV
                     DPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAALVEYIVR
                     GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFL
                     VVFASVWKQISYNFLFFYAALHSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFL
                     LVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFL
                     VIVLTVVQFRYVESKVRYQ"
     gene            29108..29953
                     /gene="ugpE"
                     /locus_tag="OQQ76_000798"
     CDS             29108..29953
                     /gene="ugpE"
                     /locus_tag="OQQ76_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HCS1967390.1"
                     /translation="MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAA
                     PMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAI
                     VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF
                     LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWP
                     LLIITDVDLGTTVAGIKGMIATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGL
                     VDSEK"
     gene            29955..31024
                     /gene="ugpC"
                     /locus_tag="OQQ76_000799"
                     /pseudo
     CDS             29955..31024
                     /gene="ugpC"
                     /locus_tag="OQQ76_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417907.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol 3-phosphate ABC transporter ATP
                     binding protein UgpC"
     gene            31021..31764
                     /gene="ugpQ"
                     /locus_tag="OQQ76_000800"
     CDS             31021..31764
                     /gene="ugpQ"
                     /locus_tag="OQQ76_000800"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1967391.1"
                     /translation="MSNWPYPRIIAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKL
                     SKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAE
                     RCREHGMMANIEIKPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQLAA
                     PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKP
                     QRAAELLRWGVDCICTDAIDVIGPNFTAQ"
     gene            complement(31751..32191)
                     /locus_tag="OQQ76_000801"
     CDS             complement(31751..32191)
                     /locus_tag="OQQ76_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2756 family protein"
                     /protein_id="HCS1967392.1"
                     /translation="MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQ
                     TQQIQQKGMLNQQLKTQTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGG
                     MLNSNRNPDSSLNQQHMLPERRNGDMLNQPSTPQPDIPLKTIGP"
     gene            32311..34044
                     /gene="ggt"
                     /locus_tag="OQQ76_000802"
     CDS             32311..34044
                     /gene="ggt"
                     /locus_tag="OQQ76_000802"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HCS1967393.1"
                     /translation="MIKPTFLRRVAIAALLSGSCFSAVAAPPVSYGVEEDIFHPVRAK
                     QGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKN
                     GNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGT
                     MPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDK
                     LVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPIS
                     GDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADR
                     SEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYESNQTTHYS
                     VVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANA
                     VGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGMNVAEATNA
                     PRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYGASD
                     PRSVDDLTAGY"
     gene            complement(34082..34366)
                     /locus_tag="OQQ76_000803"
     CDS             complement(34082..34366)
                     /locus_tag="OQQ76_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YrhB family protein"
                     /protein_id="HCS1967394.1"
                     /translation="MITYHDAFAKANHYLDDADLPVVITLHGRFSQGWYFCFEAREFL
                     ETGDEAARLAGNAPFIIDKDSGEIHSLGTAKPLEEYLQDYEIKKATFGLP"
     gene            complement(34566..34721)
                     /locus_tag="OQQ76_000804"
     CDS             complement(34566..34721)
                     /locus_tag="OQQ76_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967395.1"
                     /translation="MEKLTTELHSLSEMDRRHVVSILAEIANGYDDFNDILIYLEFYP
                     NHKILIS"
BASE COUNT         8128 a         8988 c         9705 g         8043 t
ORIGIN      
        1 agctgcatga caaagtcatc gggcattatc tgaacataaa acactatcaa taagttggag
       61 tcattaccat gcaactgaac ttaattttat aaattaagtt cagttaatat cttttctttc
      121 ctcgtttcag aaataactca atcttccttc ggcaagcact gcaaatgccc atgccgcacg
      181 ccgcgctggg cgataacgtc atcggcaaaa tgctgcacgt cgcccatatc acctttcagc
      241 acggcgattt ccagacagtc gtcgtgattg atatgcacat gcagcgtggc gacggagaga
      301 tcgtggtgat ggtgctgggt ggagacaatg cggctggcta agtcgcgttt ttcgtgttca
      361 tacacatagg agagcaccgc gaaaccttgc gtgccgtgct gctgagtggc ctcctgggcc
      421 agggcgctac gcagaatatc gcggatagct tcggaacggt tgttataacc acgacgctgg
      481 ctcaggctgt ccagcgtctc cagtaaatcg tcatcaagcg tgatggtgac tcgttgcatt
      541 tgcgttaaac cttttctgtg gcgcgacggc gcacggggaa tgcgggtaat accgcgtttt
      601 gtagcacacg tccggcgtca gaggaaaagg ttaatttatc tcccaccgcc tgggtttcga
      661 cgatttgtcc gttgtccatc accatcaccc gctggcaaaa gcgttctaca agacgtaagt
      721 cgtgggtgat gaacaggcag gcggtgccaa actgttgttg cagctttttc agcaggcgaa
      781 tgacgcccgc ctgtaacacg agatcaaggt tagaaacggt ttcatccaga atcagcaatt
      841 tcggttcgac cgccagcgcg cgtgctaggc agacgcgctg gagctggccg ccgcttaact
      901 gcggtgggcg tttgtcgaga acgctgtcat cgagatcgac cgccttcagc atttcgctgg
      961 cgcgcgccag ttgttcggat tttttcagtg atagcaggtg gcgcatcggt tcacgcagga
     1021 tctcgcgcac ggttttgcgc ggattcacgg cactgatgga gtcctgaaac accatctgaa
     1081 tatcacggcg gaaggcttta cgttgggcgc gattaagttt cgccagcgat tcgccgcgcc
     1141 agctaatatt cccttgtgag ggagactcta agcctaccag cagccgcgcg agggtgcttt
     1201 ttccgcagcc gctgcgtccc agcagggcga cggtttcgcc gcttttcagg gtcagggaaa
     1261 cgttattcag caccgcctga tgttgatgtt ttccgctaaa tccaccgtgg gcatagtgat
     1321 gggaaaggcc gctgacgtta agtaaggtca tgataccagc tccataccgt agagggcgag
     1381 atgagcggaa accaggctgc gcgtcaccgt atgtttgggg gcgttaaaca gcgtttctat
     1441 atcgccctgt tcgacaattt taccttgtga catcaccgcc acgtcatccg ccagacgcgc
     1501 cacaacgccc atatcatggg tgaccagcag cattcccggc gcttgttttt gcataatgct
     1561 ttccagcaga tcgaggatgc gcgcctgtgc taccacgtcg aggtcggtgg tcggttcatc
     1621 tgcgatgata aacggtgatt cacacagcac cgccatcgca atcatcatgc gctgcaacat
     1681 gccgccgctc atctcgaacg ggtacagctt cagcacgcgc gcggcgtttt ccagccccac
     1741 cgcttctatg gcagcggtaa gcgtagcgtc atcggcgggt ttccctaacg ccaggcaggt
     1801 ttcccgcgcg tgggtgtgca tggtgtgtag cggattaaag gcgctgcgcg ggttctgcat
     1861 gatggtggca attttgatgc cgcgcagggc gcagggataa accgctttgc catcggctaa
     1921 aatttccccc gccgtctggc gaacgccagc gggcaaaatg cccagcgtcg cggcgcaggt
     1981 taatgatttc ccgctgccgc taccgccgac taacgccagc acgcgcccgc gttgcagggt
     2041 taacgataca ccgtgtacca gcggctgcgc ggcctgtagc gcgatattac gtagttcaat
     2101 ctgttgcggc attagtgtgc gtgctccgtc accagatgag ggtccagatg atcgcgcagt
     2161 gcgtcaccca ccaggttaaa ggccatcacg ctgataaaca gcgccagccc cggccagaac
     2221 atttgcagcg gctgggtcca gatatactgg cgcgcgtcgt taatcatcac gccccattcg
     2281 gcggtcggcg cggtcacacc gaggccaagg aaagacatcc ccgagacgtg cagcatcata
     2341 tggccgatat ccagcgttgc cagcaccagc agcgaaggga tcaccgcgcc tgccagatga
     2401 tcgacaaaca ctcgcacata gcccgcaccg gaaagccgtg acgccagcac aaactcgcgt
     2461 tggcgtagtg aaatcaccag gctgcgcacc atgcgtgcat accacgccca gtgcgacagg
     2521 gcgatggcga taattacgtt ggtcagcccg gtgccgagca cgccaaccat aaagaacgac
     2581 agaatcgagg tcgggaaggt cataaacata tcggcgacgc gcatggtggc ctgatcaacg
     2641 cgcccgccaa tcaacccggc gctgccgcca ataaccagcc ctaatgtcag caccagcagc
     2701 aggcaggcca ttaccgaacc gagcgacacg cgggtcgctg ccatcagccg cgagaaaata
     2761 tcgcgaccta agtgatcggt gcccagccag tgctgcgcat ccggcgaaag caggcgcgac
     2821 ggcaaatcaa tcgcctgggg gtcatacggc agccaccact ggctggtgag cgcaatcagc
     2881 gccagcaggg cgataatgat cagcgccagg cgtaccgacc agcgggaaga gaggaaaaag
     2941 ttcacgcgtg cgctccttca tgacgacgaa tgcgcgggtc cagcgcggcg ttgagcaaat
     3001 cgacaatcaa attacagacc acaaaaacca ccaccatcat cagcgtaaag cactgaatca
     3061 ccggatagtc acggttaaaa atcgccgaca ccgcatagcg cccgacgcca ggccaggcaa
     3121 agatgttttc gataatcatc gtcccgccaa tcaattcgcc aatgtgcatc cccacggcgg
     3181 tgatcatcgg cagcgaggca ttgcgcagaa tatggcggcg ttcggtctgt ttgtcattca
     3241 ggccgcgtag ccgcgcccag gtgacgtgac gctgaccggc gacgtccagc atactggcgc
     3301 gcagcagtcg cgcgttaatc gccagcgaca taaaggcgat ggaaaccgca ggcaaaatga
     3361 tgtgctgcca gccgccgtag cccatcgcgg gtagccattg cagatacacc gaaaacgcca
     3421 tcactagcaa aaatgccagc cagaagttgg gcatcgacac gccaagaaac gcgataaagc
     3481 gcacggcgaa atccggcaaa cgatcgcggt ggcgcgccgc ccagataccg agcggtacgg
     3541 aagtgagcag aattaatacc agcgccgcac ctgcaagttc cagcgtggcg ggcaggaagt
     3601 tcagcatatc gtccagcacc gggcgttggc tggcgaatga gataccaaag tcaagatgca
     3661 gcgccttcca caaccaggtg ccgtactgga cgtacagcgg ctgatccagt ccgagcatgg
     3721 tgcgggtaga ggccagcatc tccggcgtcg gcggcaggtt agacagacgc aaataatcga
     3781 gcgccgggtc gccggtaccg aggcgcagca tcagaaaaat gatcaccgag gcggcgagca
     3841 ccatcgggat cagcagcaga aagcggcgta atacgtaacg caacattaag gtttcaccgg
     3901 tttaatctgt tcgaacggaa tttcggtggc gatcggcgcg taggggatgt tacccagctc
     3961 cggttttgat accaccatca ttgagatgta actgataggc agataaaccg cctcgtcatg
     4021 cagacgggtc agaatgtcgc gatacagcgc ctgacgttgc gtttcgtcat gggtcgccag
     4081 cacttcgccg atctctttat caatcagcgg tttgtcggct aatccttgct gtgcctggaa
     4141 gtcagcgtgc gacggtacgc gcattgaact caggaaggcg tgtggatcgt atggcgcgcc
     4201 ccaggtgcgg tggaaaatca tgccaaaacg accgtcgcgc tgacgagcat agatactgct
     4261 ctcttcttcg ccaatcagcg agacatctgc gccaatctgg cgcatatcag cctgaatgat
     4321 ttccgccatc gatttgctta acgcatcggt gccgatgaac gacagttcaa tgcgcagcgg
     4381 ctgaccattt ttctcgcgga tgtctttgcc cgcaggcagc gtccaaccgg ctttttccag
     4441 caacgctttc gctttctgcg gatcgtactg gcgcggtttc aggccgaggt tggcgtaggg
     4501 cacagaaggg gcaaacaggg tgtcggcgac ctgctgggtg ccatacaacg cgttatcaat
     4561 cagcgatttt ttgtttaccg cgtaattaag agcttcacgt actgccagct cattggtggg
     4621 ggttttggcg gtattaagcg ccagcatcac ggtttcgatc ggctgtgaca gttgggtatg
     4681 gtaagccggg ttctggctaa agcgggcgaa ggtatcgagc ggtaataacc cttcgtttcc
     4741 gtacagcagg tcgatatcgc cagtttcaaa cgccaccgcg cgggtagtcg ggtccgggat
     4801 gacgttaaag gtgatctttt taatcgctgg cttttcgccc cagtagtttt cgttacggac
     4861 gaagacatcg tactgattca gtttcgattc ctgcaaaatc cacggtccgg tgccaatcgg
     4921 cgctttaatt ccgttcatgg tttcatggtt tttaaactgc gagggagcga taaaacggaa
     4981 aggacggggc agggccagtt cttgcaggaa aggatagtag gcgcttttca gggtaatttg
     5041 cagctctgtt ttactgagtg ctttaacatc aacaatctgg tttgccagct ccagccaggc
     5101 gtgacgttga cggttatcga gcactgcgcg gaagttttct gccgccgcct cggcatcgaa
     5161 cggttcaccg ttggataatt tcacgtcatc acgcagggtg aaggtccagg ttttaccatc
     5221 ttctgaatga gtccagcttt ttgccagcca cgggatcacc gaaccgtctg cctgatattt
     5281 caccaatggt tcataaacca tgctctgggc gaacatctgg ttaggcgtgt aaaggtgcgg
     5341 gtttagtggc ccgacattca ccggccaggc ggtagtgatt tcatctggtg cagcggcatg
     5401 gacgataaaa gacgcacaag ccagcagcgc aaatagagtg cggtggagtg tggagagcat
     5461 gataacccca atggattaaa atagatggcg gaaataagta tgacgatttt aagtattcgt
     5521 catacttatt acctgttctg gatcaataga tgggcagtcg ggtgggcgga tcagttaact
     5581 gaatcgatcc attgcacact gtcggcggtg agcgtaaagg ggggggggtg cagatcgcaa
     5641 ggcttaaatt ttctagctga caatggctga ctgacagcga ggagtgatag gtgctatcta
     5701 cgctgacgat ttgccaggcg ctgccgccac gctgtttaac gatggcttct ttgcgcgtcc
     5761 agatgcgcca gaacatttcc agttgctgat caggatgcac ggcgtccatt tcagcgtgtt
     5821 ccccgaggct gaacacggcg ttcgccagcc agcgccagtt ggcgcgcggg cgaatcactt
     5881 cgatatctca gccgacttcg ccttcatcgc tcaacagcag agcgatatcg tcaccgctat
     5941 ggcttaagtt gaaccatagc ggcgtttccg gcgcgaatgc aggtttgcct tgttcgccat
     6001 agatgatctc cggtagcggg gaaagcgtgt gcgaaagcaa tgcacgcccc gccagccagc
     6061 gttcgcgtcg tggaccttgc ggtgcttgct cgcgtaaacc cggtggcagt ggagctgcgc
     6121 ttaaggtcga aactttcccc agaactatcc gatacatatc agggccaacg tttaatggaa
     6181 aatgaaagtg cgtatcgtat cacttgtcgc ctcatcccgg taaccgactt ttcggtctgc
     6241 ctggccccag taaaatcgcc agtttgctac cgcctttggt ggtttccatc cagattttac
     6301 acacgctggt taatggcacc gaaagtagca tccctaccgg gccgagcagc catccccaaa
     6361 ttaacaatga aagaaatacc accatggtgg acatccccag gcgatggccc atcatccgtg
     6421 gttctaaaat attgccgatg accatatgga ccactaaaaa caatgcgccg accagaatac
     6481 attcgtaaac accattaaac agcagcacct gaatcattgg cggtacggcg gaaattaccg
     6541 cgccgatatt gggcacgtag ttgagcaaaa acgccagtac tgcccacatc agcgcaaact
     6601 gtacgcccat tagcgccagc cccagccaga cgatgacacc tgtccataaa ctgagtagcg
     6661 tctttaacgc cagataatgc gaaacgcctt taagtgcgcg gtgtaatcct gcgatgtgaa
     6721 tctgtgggtt attcagcgca aaacgcattt tgtaagggac gtggcgcact tcaaacagca
     6781 taaaaactac ggtcatcacc agcaaaagca cgctcgccat tgccccggaa agcccggtca
     6841 ttagcgctgt ggtgaaggta accacttttt ccgagtccat ccgctgcagc attcgctccg
     6901 gcgacatatg caaattaaga aaaggcaaca tctcctgcaa tttaaaaagt ttgcgcgtca
     6961 gctccttatt aaacttcggc agcatagaga taaattcgtt aaacgatgcc gccagtacgc
     7021 cgaccagcgc ggttagtgcg atcagcatca ccaccactac aatcgtaatg gcaacggggc
     7081 gttgtactcc ccgacgaata aaccaggtaa cgagcgggtt gaggacgatg gcaaaaaaca
     7141 gcgccagtaa cagctgcaca atgatatctg ccgctgcgtg aatgcccgcg aggatcacta
     7201 ccagcgaggc caacttgagc agaatgtgca tgcccgtttt atcgggttga ggggtttcca
     7261 ttggggcttc cttgtgactt tttgtgttaa gtgtagcggg agtcacgcca gcaatattct
     7321 gattcttact gctgattttc acgtcagcac gtggtaaaaa tgaaacactg ttgtaaaaat
     7381 gtggtgatcc tcatgcccga acccgtagcc gaacccgcgc taaacggatt gcgcctgaat
     7441 ttgcgcattg tctccattgt catgtttaac ttcgccagct acctcaccat cgggttgccg
     7501 ctcgctgtat taccgggcta tgtccatgat gtgatgggct ttagcgcttt ctgggcagga
     7561 ttggttatca gcctgcaata tttcgccacc ttgctgagcc gtcctcatgc cggacgttac
     7621 gccgatttgc tgggccccaa aaagattgtc gtcttcggtt tatgcggctg ctttttgagc
     7681 ggtctgggat atctgacggc aggattaacc gccagtctgc ccgtcatcag cctgttatta
     7741 ctttgcctgg gacgcgtgat ccttgggatt gggcaaagtt ttgccggaac gggatcgacc
     7801 ctgtggggcg ttggcgtggt tggctcgctg catatcgggc gagtgatttc gtggaacggc
     7861 attgtcactt acggggcgat ggcgatgggt gcgccgttag gcgtcgtgtt ttatcactgg
     7921 ggcggcttgc aggcgttagc gttaatcatt atgggcgtgg cgctggtggc cattttgttg
     7981 gcgatcccgc gtccgacggt aaaagccagt aaaggcaaac cgctgccgtt tcgcgcggtg
     8041 cttgggcgcg tctggctgta cggtatggca ctggcactgg cttctgccgg atttggcgtc
     8101 atcgccacct ttatcacgct gttttatgac gctaaaagtt gggacggtgc ggctttcgcg
     8161 ctgacgctgt ttagctgtgc gtttgtcggt acgcgtttgt tattccctaa cggcattaac
     8221 cgtatcggcg gcttaaacgt agcgatgatt tgctttagcg ttgagataat cggcctgcta
     8281 ctggttggcg tggcgactat gccgtggatg gcgaaaatcg gcgtcttact ggcgggggca
     8341 gggttttcgc tggtgttccc ggcattaggt gtagtggcgg taaaagcggt tccgcagcaa
     8401 aatcaggggg cggcgctggc aacttacacc gtatttatgg atttatcgct tggcgtgacc
     8461 ggaccactgg ctgggctggt gatgagctgg gcgggcgtac cggtgattta tctggcggcg
     8521 gcgggactgg tcgcaatcgc gttattactg acgtggcgat taaaaaaacg gcctccggaa
     8581 cacgtccctg aggccgcctc atcatcttaa aacttgctga ataaccagcg tattaatgat
     8641 gttttctgcg gtggtctgcg ctttttgctg atcgtcagcg ggcagcgtaa tttgcatggt
     8701 cagcagttga ttacccacgt tacccagaat aacggaagag tacgccgtct ggcctttcgc
     8761 ggagataata ctgtctaact gctgcatttt gtgacctttc agctcaatgg ctttattggt
     8821 taccacttgc agctgcggat cgcggctacg ttgctgatct tccagacgct tcgccagcac
     8881 cgccagatct tctttcggat catcgcccat gatgacgatg actgctttct gcccggtggc
     8941 gtcggaccag acatgcatgt tattggcctg cgttcccagc ttaccgctct ggtcggtcat
     9001 atccgctggc agcgagaaac ttaacttgcc atcaagcagg ttgacgggat tcccggtagc
     9061 gttactttcc gcgaccgaac cctgcgccgt agcgttagtg tctttatcat cacaggccgc
     9121 aagccccata accagcaggc caattccgac atatttaacc agattgcgca ttgacttctt
     9181 cctttcgata aacggccata acggctcatt catccatctt atcacaactc tgataacgaa
     9241 cctttaactc gcctgcaaag cgttgatttc ggatttatct gccagtcttt tcaacagcat
     9301 attgagtaat acgccataca ttggcaggaa gaaaacgata ctgattaaca ctttgaaaca
     9361 gtaatcgacc agcgcgattt ccatccagtg ttcagccata aaggcatccg ggctacgcca
     9421 gaaggcaatg aagaaaaagg ccagcgtgtc gctgacgtta ccgaacagtg tggacgctgt
     9481 cggtgccagc caccagcggc gactctgacg caggcggtta aaaacgtgca cgtcgaggat
     9541 ctgtcccagc gcgtaggcca tgaaactggc ggtggcgata cgggcgacaa acaggttgaa
     9601 gtgggcgagt gcgccgaatc cctgccagga acccatatag aatagcgacg agatgacgta
     9661 ggagatcagc aacgccggga tcatcaccgc aaagatgata cgacgggcca gcggtgcgcc
     9721 aaaaatacgc acggtcaggt cggtagcaag gaaaataaac gggaagctaa acgcgcccca
     9781 ggtggtatgg aaacccaaaa tggagacggg aagctgaacc agatagttac tggaggtgat
     9841 caccagcaga tgaaataacg ataaccagaa caacgcctta tagcgttgag tttgcgagaa
     9901 aacgttcata ttgtaccttt ttgattaacc attggggtga gggaacccaa tacgtacgac
     9961 acgtctgtta ccttaacata ataacgtgct tacccttttt tcgagccgcc gcatgatact
    10021 gctttacgtt gacaatgcaa tggttaattt tcacgcaatc gttaacctgg tttgcttacg
    10081 gactcacagg gcgtaaacta gcgccgtttt tttatgtgat gagaagaaaa tgaccgatct
    10141 cttttccagc cctgaccaca cactcgacgc acttggcctg cgctgcccgg aacccgtaat
    10201 gatggtgcgc aaaactgtgc gcaatatgca gcccggcgaa acgttgctga ttatcgccga
    10261 cgatccggcc actacccgcg atattcctgg gttttgtacc tttatggaac acgaactggt
    10321 tgcgaaagag acggatggac tgccttatcg ttatttgatt cgtaaaggcg gttgatgggg
    10381 gctgattggc ttcgatgccg ccttttcccc tcaccctaac cctctcccca gaggggcgag
    10441 gggaccgatc gcgctcaata ttgcgatcgg tttgccttat ctcctgcgca acaatcttaa
    10501 cgcattcgct gtcaccagca ccgtcgcacc cgtatctgcc agcaccgcca gccatagtcc
    10561 ggtcatccct aaaagcgtgg tgacgaggaa gatccctttc agtcccagcg caatggtgat
    10621 gttctggcgg atattggcgt gagtggcgcg tgccagttca atcatttgca ccaggccgcg
    10681 caggtggtta tgggttaatg ctgcatcagc ggtttccagc gccacgtctg tgccactgcc
    10741 cattgcaatc ccaatggcgg cagctttcat cgctggcgcg tcgttaatac cgtcaccgac
    10801 catcgccagc ggcgcatgtt gattcagctc ggtcaccgct ttgactttat cttccggcaa
    10861 caggcccgct ttaaactcca gccccagctc cccggcaatt gccgccgctg cgcgtggatt
    10921 atcgccggtg aggatcaccc ctttgacgcc cagcgcgttc agttcactga tggcagttgc
    10981 agcatcggcg cgcagggtat cctgcaatgc aatgataccc agcacgtcat cattacgtac
    11041 taccagcaca accgtttgcc cggcgctttc cagttcatta atcaaaccag caaatgcatc
    11101 agcgggatgt ttcccggcag cgcatatcaa cacgcgctca ccgttaacct gcgcttcaat
    11161 gccagacccg accagcgccc gctgtgattc ggcggcggga atggcgagtg cagcaacctg
    11221 tgcttcgcgc acgatggcct gcgccagtgg atgcgtcgcg ctttgctcga ccgccgccgc
    11281 cagtgtcagc agttcagatt cactaatacc cgttgccgga tgaatcgcgg taacgcgcgg
    11341 tttaccgacg gtcagcgtac cggttttatc aaacgccacc tgagtaacac gacctagttg
    11401 ttccagcgcc gctccgcctt taatcaacgc cccacgacgc gctgctgccg ccagcccgga
    11461 ggtaatcgcc gcgggcgtgg agataactaa cgcacacggg cagccaatca gcagcagcgt
    11521 caggccttta taaatccact cctgccagct ggcggcaaac agcagcggtg gcaccagcgt
    11581 caccagcagg gcgacggcca taatcgctgg cgtataaata cggctgaaac ggtcgataaa
    11641 ccgctcaatg ggggcgcggc gctcttcggc ttcttcgatc agtttcagaa tccggtcaat
    11701 ggcgctggca cccggttctg acagcacttc cagcgttacc agacggtcta cgctggtggc
    11761 tcctgcagga actttatcgc ccgtcgcgcg ctccaccgga atggattctc cggtcagggc
    11821 gctttcatca aaactggcaa acggtgagag cagtttaccg tcggcaggca aacgcccacc
    11881 tgcggcgact tcaatcacat cgccaggccg caggctgtta atcgccacct cttcccgctc
    11941 accgttacgc aggcgcgtgg cggtttctgg tttcagcgcc attaacgcgc taacgccctg
    12001 acgcgcgcgg ctggcggccc agccttccag tcgttcacca atcaaaaaca gcagcaacac
    12061 catcgcagct tcagccgttg cgccaataaa cagtgcacca atagcggcta cgctcattaa
    12121 ggtttcaatg gcgaagtagc tgccggattt gatcagccgt aatgcctgat gagcaatcgg
    12181 gtacagccca accagcgtgg tcgcgataaa cgccagttgc ccgaacggat gattgaactg
    12241 ctccagaccc cagctgattg ccatcatcac gattagtgta atcagcggca gattctcttt
    12301 caggcgcgat gcttgtggct cgtcggcggc ctgctcatcg cgcagggaat agcccgcttt
    12361 ttgcaccgca gattcaactt gtgcacgaat gtcattgtcg gcatcaacca ccagtttttc
    12421 ggtggcgaac aacacctgca cctgattcac acctgcaagc tggcgcacgg cattttctac
    12481 cttgcgcgca caggcggcgc agtccatgcc actgactttc cagctatagc gggtgccgga
    12541 gacgttttca gagagcgttg gcgagctgga gcatgcgccg tcgcagcaac agtcgttggc
    12601 gttctgtacc gtggttagcg gtttgaacgc agcaaattga ggggctttct tgccgtgatt
    12661 gtcaggtgtc gacatggcat actccggtta agttttttct cattaaccga aggatacact
    12721 ctggagtcga ctccagagtc aagttttatc agagatacag tgagcggacg atgaggaagt
    12781 gaccggcaaa gtagcaggcc gcagcaatcg cgttatccgc acggaagcgt cggcgatagt
    12841 ggctccccag ccagacaaag ttactgataa acagcaacga agcgccaaca aacgcagaga
    12901 gcgccggagc ggtcggacgg aagaaccaca gttcacctgc cagccacacc atcaccagcg
    12961 tcatgccgat aaacgtgcag ataggccaac gatactcttc cagccgcgtc cagataatcg
    13021 ccagtaacag cgcacccaga accagcaaca ccagtggcag aggccagaag aaagagagcg
    13081 tcatctgact ggcgaaatag atggtgtaca gcaggtgcga gaggaaaaac gcgccgatgg
    13141 cgtacatcag acgttgacgt ggcaacaggg ttagcgcatc gcccagcagt gaggcgcaca
    13201 gccctgccag caccagatag ctaatggcgt cgaacatcgg cgcttgccag gccagtaaca
    13261 gcaggagaag aagggttaac ggtttaaaca cccagcgttg ccaggttggc ccacgatacg
    13321 atgcatccac agatagccat gcggaaagac agacagcgat aaacgaccaa agcatcttag
    13381 ttccttgaat tcgttatttt ttcgtaagcg gaatgcctac ggtcttgctt ccagtttagt
    13441 ggcgagggtg gacggatgac aacaccataa ctggcagggt atgcttattt ccgcattttc
    13501 cgatgaggga taaagatgag caaaccacct cttttcttta ttgttatcat tggcttaatt
    13561 gtcgtcgccg catcgtttcg ttttatgcaa cagcgacggg aaaaagctga taatgatatg
    13621 gctccgctcc agcaaaagct ggtggtggtg agcaacaagc gggaaaaacc gattaacgat
    13681 cgccgttcgc gccagcagga agtgactccg gcaggcgcca gtatgcgcta tgaggcaagc
    13741 ttcaaaccgc aaagcggagg aatggagcag acgtttcgcc tcgacgccca gcagtaccat
    13801 gccctgacag tgggcgataa aggtacgctg agctataaag gaacgcgctt tgttagcttt
    13861 gttggcgaac aataaggtta ttttttaact ttaaatttct tctgccagac cagcagttca
    13921 aacacgccga aaaggaaaat ccgcaccttt tcggcggtgg tcatctgcgg gccatctttc
    13981 ggtaaagtgg atttcaatag cgccagctgc ataccatgca tcagcacggt aaaaatcagc
    14041 gccacgttaa cgaaaatatt cagcgggcgc gggaagggat gcaccagatt gaggattaaa
    14101 aatccccaaa cgcagagcat taacaaacga ccaatattaa tcagcatcac tttctccttg
    14161 tgcttcgcgt tgatacagcc gataagccac ctgacccgcc actttttccc gatgtaatga
    14221 ccagtttgcc ggaacagtgg gcagaccgtt ttcgacttcg ctttcgacat aaatcagggc
    14281 ttcgtcagcc agccagccgt tatcttccag taaatttatc gtctcttcta acaagccacg
    14341 gcggaacggt ggatcgacaa acacgatatt atgcggtgta cctttttgcg ccaggaatga
    14401 catcgcgttg ctgttcacca cgcgtgcatt gcctgctttt agtgtcgcca gattcttaat
    14461 taactgctga gaaaccgcgc gatccatctc aatcaacgtg gcccccgcag cgtagcgcga
    14521 taacgcttcc agtcccagcg cgccgctccc ggcgaagcaa tccagacatt gggcgtcaac
    14581 aatgaccgga gccagccagt taaacaacgt ttcgcgtacg cggtcggtgg tggggcgcag
    14641 acctgggcta tcaggaaccg ggagtttacg gcctcgccac tgcccgccaa taatgcggat
    14701 ttggccgctg ccggaatgat tcgttttttt catgataaat tgctcaatcc gccagataac
    14761 acatacttgc aggcggtgat gtgaattaag ttaagtgata gactatttca tcattttttt
    14821 agctgctatg tacatagcgt taacgctgtg ccatgaagca acagcgagga gtgtagtcgc
    14881 aaatggcgaa agaaaaaaaa cgtggctttt tttcctggct gggctttggt caaaaagagc
    14941 agaccccgga aaaagagaca gaagttcaga atgaacaacc ggttgtagaa gaaatcgttc
    15001 aggcgcaaga gcctgcgaag gcttctgaac aagccgtcga agagcaaccg caggcgcata
    15061 ctgaagccga ggcggaaact tttgctgccg acgttgtgga agtcactgaa caggttgctg
    15121 aaagtgaaaa agcgcagcct gaagcggaag tcgttgcaca gccggaaccg gtcgtagaag
    15181 aaacgccgga gccagtggct atcgaacgtg aagagctgcc gttgccggaa gacgtcaacg
    15241 ccgaagaggt ttcgccagaa gagtggcagg ctgaagcgga aaccgtagag attgtcgaag
    15301 cggcggaaga agaagcggct aaagaagaaa tcaccgacga agagctggaa gcacaggcgc
    15361 tggctgccga agcggcagaa gaggcggtga tggtggttcc tccggtagaa gagcagccgg
    15421 tggaagaaat cgctcaggag caggaaaaac cgaccaaaga aggtttcttc gcgcgcctga
    15481 aacgcagcct gttaaaaacc aaagaaaatc tcggttccgg atttatcagc ctgttccgcg
    15541 gtaaaaaaat cgacgatgat ctgtttgagg agctggaaga acagctgttg atcgccgatg
    15601 tgggcgtgga aaccacacgt aaaattatca ccaatctgac ggaaggcgca tcccgcaagc
    15661 agcttcgtga tgccgaggcg ctctatggcc tgctgaaaga agagatgggc gagattctgg
    15721 cgaaagtcga tgagccgctg aatgttgaag gtaaaacgcc gttcgtgatc ctgatggtgg
    15781 gcgtcaacgg tgtgggtaaa actacgacga ttggtaagct ggcacgtcag tttgagctgc
    15841 agggtaaatc ggtgatgctg gcggcgggcg atactttccg tgcagcagcg gttgaacagc
    15901 ttcaggtctg gggtcagcgc aacaatattc cggtgattgc ccagcatacc ggtgcggatt
    15961 ccgcctctgt tatcttcgac gccattcagg cagctaaagc gcgtaatatc gacgtcctga
    16021 ttgccgatac cgccggacgc ctgcagaaca aatcgcacct gatggaagag ttgaagaaaa
    16081 tcgtccgcgt gatgaagaaa ctcgacgttg aagcgccgca tgaagttatg ctgactattg
    16141 atgccagtac cgggcagaat gcggtaagcc aggccaaact gttccacgaa gccgttggct
    16201 taaccggcat cacgctaacg aaactggacg gcacggcgaa aggcggggta attttctcgg
    16261 tggctgacca gtttggtatc cctatccgct acattggtgt cggcgaacgt attgaggatt
    16321 tgcgtccgtt taaggcggac gactttatag aggcactttt tgcccgagag gattaacaat
    16381 gattcgcttt gaacatgtca gcaaggctta tctcggtggg agacaggcgc tgcagggcgt
    16441 tacgttccat atgcagccgg gtgagatggc gtttctgacc ggtcattccg gcgcagggaa
    16501 aagtaccctc ctgaagctga tctgtgggat tgagcggccc agcgccggga aaatctggtt
    16561 tagcggccat gacatcacgc gtctgaaaaa ccgtgaagtt ccgtttctgc gccgccagat
    16621 tggcatgatt ttccaggatc accatctact gatggaccgt actgtctacg ataacgtggc
    16681 gatcccgctg attatcgctg gtgccagcgg tgacgatatt cgtcgccggg tgtcggcggc
    16741 actggataaa gtcgggctac tggacaaagc gaagaacttc cctattcagc tttccggcgg
    16801 tgaacaacag cgtgttggca ttgcccgcgc ggtggtgaat aagcccgcgg tactgctggc
    16861 ggacgaaccg accggtaacc tggacgacgc gttgtcggaa gggattctac gtctgtttga
    16921 agagtttaac cgcgttgggg taaccgtatt gatggcaacg cacgacatca acctgatttc
    16981 acggcgttcc tatcgcatgc tcaccctgag cgatggtcac ttgcatggag gcgtgggcca
    17041 tgaataagcg cgatgcaatc aatcatattc ggcagtttgg tgggcgtctg gatcgcttcc
    17101 gtaaatcggt cggcggctca ggcgacggcg gtcgtaacgc accgaaacgc gcgaaatcct
    17161 cgccaaaacc ggtaaatcgc aaaaccaacg ttttcaacga acaggtgcgc tatgccttcc
    17221 acggcgcatt gcaggatctg aaaagcaaac cgttcgccac gtttttaacg gtgatggtta
    17281 tcgccatctc cctgacgctg cccagcgtct gttatatggt gtacaaaaac gttaatcagg
    17341 cggcgacgca gtattatccg tcaccgcaaa tcactgttta cttgcaaaaa acgctggacg
    17401 atgacgccgc tgcgggcgtg gtggcacagt tgcaggccga gcaaggcgtg gagaaagtga
    17461 actatctttc tcgtgaagac gcactgggcg agttccgtaa ctggtctggt tttggtggtg
    17521 cgctggatat gctggaagaa aacccgcttc cggcagtggc ggtggtgatc ccgaaactcg
    17581 attttcaggg gacggaatca ctcaatacgc tgcgtgatcg tatcacgcag attaacggca
    17641 ttgacgaagt gcggatggat gacagctggt ttgcccgtct ggcggcgttg accgggctgg
    17701 tcgggcgcgt ttcggcgatg atcggcgtgt tgatggtggc ggcagtgttc ctcgtcatcg
    17761 gcaacagcgt acgtctgagc atctttgctc gccgtgactc catcaacgtg cagaaactga
    17821 ttggtgcgac ggatggtttc atccttcgcc cgttcctgta tggtggcgca ctgctgggat
    17881 tttctggcgc attgttgtca ttaattttgt cagaaattct ggtgctgcga ttgtcatcgg
    17941 cggttgcgga agtggcacag gttttcggaa cgaattttga tatcaatggt ttatcgttcg
    18001 atgaatgcct gctattgctg ctggtatgct cgatgattgg ctgggtggca gcgtggcttg
    18061 ccacggtaca acatttacgc cactttacgc ctgaataata aaagcgtgtt atactctttc
    18121 cctgcaatgg gttccgtagc agggaaagag atcccgttgt ctcttcccgg tatttcatct
    18181 ctatgtcaca ttttgtgcgt aatttattca caagcttgca ttgaacttgt ggataaaatc
    18241 acggtctgat aaaacagtga atgataacct cgttgctctt aagctctggc acagttgttg
    18301 ctaccactga agcgccagaa gatatcgatt gagaggattt gaatgactga caaaatgcaa
    18361 agtttagctt tagccccagt tggcaacctg gattcctaca tccgggcagc taacgcgtgg
    18421 ccgatgttgt cggctgacga ggagcgggcg ctggctgaaa agctgcatta ccatggcgat
    18481 ctggaagcag ctaaaacgct gatcctgtct cacctgcggt ttgttgttca tattgctcgt
    18541 aattatgcgg gctatggcct gccacaggcg gatttgattc aggaaggtaa catcggcctg
    18601 atgaaagcag tgcgccgttt caacccggaa gtgggtgtgc gcttggtctc cttcgccgtt
    18661 cactggatca aagcagagat ccacgaatac gttctgcgta actggcgtat cgtcaaagtt
    18721 gcgaccacca aagcgcagcg caaactgttc ttcaacctgc gtaaaactaa gcagcgtctg
    18781 ggctggttta accaagatga agtcgaaatg gtggcccgtg aactgggcgt aaccagcaaa
    18841 gacgttcgtg agatggaatc acgtatggcg gcacaggaca tgacctttga cctgtcttcc
    18901 gacgacgatt ccgacagcca gccgatggca ccggtgctct atctgcagga taaatcatct
    18961 aactttgccg acggcatcga agatgataac tgggaagagc aggcggcaaa ccgtctgacc
    19021 gacgcgatgc aaggtctgga cgaacgcagc caggacatca tccgcgcgcg ctggctggac
    19081 gaagacaaca agtccacgtt gcaggaactg gctgaccgtt acggtgtttc cgctgaacgt
    19141 gtacgccagc tggaaaagaa cgcgatgaaa aaactgcgcg ctgctataga agcgtaattt
    19201 ccgctattaa gcagagaacc ctggatgaga gtccggggtt tttgtttttt gggcctctac
    19261 aataatcaat tccccctccg gcaaaacgtc aatccccacg cagattgtta ataaactgtc
    19321 aaaatagcta ttccaatatc ataaaaatgg ggtatgtttt agcagagtat gctgctaaag
    19381 cacgggtagt tatgcataaa acgaaataaa gtgctgaatc acaacgccac aacacacgta
    19441 ataaccagaa gaatggggat tctcaggatg aatataaagg gtaaagcgtt actggcagga
    19501 tgtatcgcgc tggcattcag caatatggct ctggcagaag atattaaagt cgcggtcgtg
    19561 ggcgcaatgt ccggtccggt tgctcagtac ggtgaccagg agtttaccgg cgcagagcag
    19621 gcggttgcgg atatcaacgc taaaggcggc attaaaggca acaaactgca aatcgtaaaa
    19681 tatgacgatg cctgtgaccc gaaacaggcg gttgcggtgg cgaacaaagt cgttaacgac
    19741 ggcattaaat atgtgattgg tcacctctgt tcttcatcaa cgcagcctgc gtctgatatc
    19801 tacgaagacg aaggcatttt aatgatcacc ccagcggcaa cctcgccgga gctgaccgcc
    19861 cgtggctatc agctgatcct gcgcaccacc ggcctggact ccgaccaggg gccgacggcg
    19921 gcgaaatata ttcttgagaa agtgaaaccg cagcgtattg ctatcgttca cgacaaacag
    19981 caatacggcg aaggtctggc gcgagcggtg caggacggcc tgaagaaagg caatgctaac
    20041 gtggtgttct ttgatggtat caccgccggg gaaaaagatt tctcaacgct ggtggcgcgt
    20101 ctgaaaaaag agaatatcga cttcgtttac tacggcggtt atcacccgga aatggggcaa
    20161 atcctgcgtc aggcacgcgc ggcagggctg aaaactcagt ttatggggcc ggaaggtgtg
    20221 gctaacgttt cgctgtctaa cattgcgggc gaatcagcgg aagggctgct ggtgaccaag
    20281 ccgaagaact acgatcaggt tccggcgaac aaacccattg ttgacgccat caaagcgaaa
    20341 aaacaggacc caagcggcgc attcgtttgg accacctacg ccgcgctgca atctttgcag
    20401 gcgggcctga atcagtctga cgatccggct gagatcgcca aatacctgaa agcgaactcc
    20461 gtggataccg tgatgggtcc gctgacgtgg gatgagaaag gtgatctgaa aggctttgag
    20521 ttcggcgtat ttgactggca cgccaacggc acggcgaccg atgcgaagta atcattaatc
    20581 ggcaactttg ggttgccgcc aaattgctaa tatcgagtac gttgcttcat gccggatgcg
    20641 gcgtaaacgc cttatccggc ctacaagatc caaagaaatc agtaaattgc aacacacatt
    20701 gtaggcctga taagcgtagc gcatcaggca atttctcgtt ggtcatcact tttgaaatca
    20761 acttgacgat taacgcttct cccagccgcc ctgttgcgcc gtaaatccca gtgcctgcat
    20821 aaacgccgtc atcacaccgc gatcttccac gcctgcatcc gccatccacc agcatgaaac
    20881 gccaggattg ttacgcaaaa cctcttccag cagatattgc cccacaccgc gacgtcgggt
    20941 gacttcccgc acacgcaggg aatccagtgc tccctcggtg ccgcttaagg ttacccgtac
    21001 ggcagcgagc aggcgctcgt taaaacgcgc ggcgtagata cggtggttat cgtcaacctg
    21061 taaagaggaa ggggaatact ccggccagat cttttgcagg tcaatccggt cctggtcgct
    21121 aaagttttct aatcgaatga tagtcagcgt catgggtaac ccgtgtaaat cacaaaagtg
    21181 gaaccagtgt agcgaaataa tttaatcgga ggctttctct tttttatttc ttttggcagg
    21241 tgattaattt tttaacagca ataattacaa agttaaaaca ttagagaatg aaaaataccc
    21301 agcataatcc cctgaatggt agtgaattat tccgcccttt gtgccgttat tttatgctga
    21361 caaaggcact tttttctgtt tatctatcaa taaattcaga atattatctg ttcttaatcg
    21421 actgaaagat agggatttta atcactatta tcacaaaata ctgcgctaaa cccttaatca
    21481 gacaggcaaa aacagtgcag tataaaaaaa gaacagtctg atttgttaac acataaaaac
    21541 aaagcaacac aacatcacga atggggattt ttgactatga aacggaatgc gaaaactatc
    21601 atcgcaggga tgattgcact ggcaatttca cacaccgcta tggctgacga tattaaagtc
    21661 gccgttgtcg gcgcgatgtc cggcccgatt gcccagtggg gcgatatgga atttaacggc
    21721 gcgcgtcagg cgattaaaga cattaatgcc aaagggggaa ttaagggcga caagctggtt
    21781 ggcgtggaat atgacgacgc ctgcgacccg aaacaagccg ttgcggtcgc caacaaaatc
    21841 gttaatgacg gcattaaata cgttattggt catctgtgtt cttcttctac ccaacctgca
    21901 tcagatatct acgaagacga aggtattctg atgatctcac cgggagcgac caacccggag
    21961 ctgacccaac gcggttatca acacattatg cgtactgccg ggctggactc ttcccagggg
    22021 ccaacggcgg caaaatacat tcttgagacg gtgaagcccc agcgcatcgc catcattcac
    22081 gacaaacaac agtatggcga agggctggcg cgttcggtgc aggacgggct gaaagcggct
    22141 aacgccaacg tcgtcttctt cgacggtatt accgccgggg agaaagattt ctccgcgctg
    22201 atcgcccgcc tgaaaaaaga aaacatcgac ttcgtttact acggcggtta ctacccggaa
    22261 atggggcaga tgctgcgcca ggcccgttcc gttggcctga aaactcagtt tatggggccg
    22321 gaaggtgtgg gtaacgcatc attgtcgaat attgccggtg atgctgccga aggcatgttg
    22381 gtcactatgc caaaacgcta tgaccaggat ccggcaaacc agggcatcgt tgatgcgctg
    22441 aaagcagaca agaaagatcc gtccgggcct tatgtctgga tcacctacgc ggcggtgcaa
    22501 tctctggcga ctgcccttga gcgtactggc agcgatgagc cgctggcgct ggtgaaagat
    22561 ttaaaagcta acggtgcaaa caccgtgatt gggccgctga actgggatga aaaaggcgat
    22621 cttaagggat ttgattttgg tgtcttccag tggcacgccg acggttcatc cacggcagcc
    22681 aagtgatcat cccaccgccc gtaaaatgcg ggcgggttta gaaaggttac cttatgtctg
    22741 agcagttttt gtatttcttg cagcagatgt ttaacggcgt cacgctgggc agtacctacg
    22801 cgctgatagc catcggctac accatggttt acggcattat cggcatgatc aacttcgccc
    22861 acggcgaggt ttatatgatt ggcagctacg tctcatttat gatcatcgcc gcgctgatga
    22921 tgatgggcat tgataccggc tggctgctgg tggcggcggg attcgtcggc gcaatcgtca
    22981 ttgccagcgc ctacggctgg agtatcgaac gggtagccta tcgcccggtg cgtaactcta
    23041 agcgcctgat tgcgctcatc tcggcaatcg gcatgtccat cttcctgcaa aactacgtta
    23101 gcctgactga aggttcgcgt gacgtggcgc tgcccagtct gtttaacggt cagtgggtgg
    23161 tggggcatag cgaaaacttc tctgcctcta ttaccaccat gcaggcagtg atctggattg
    23221 ttactttcct cgccatgctg gcgctgacga ttttcattcg ttattcccgt atggggcgcg
    23281 cctgccgtgc ctgcgcggaa gatctgaaaa tggcgagcct gcttggcatc aacaccgacc
    23341 gggtgattgc tttgaccttt gttattggcg cggcgatggc ggcagtggct ggcgtactgc
    23401 tcggtcagtt ctacggcgtc attaacccct atatcggctt tatggccggg atgaaagcct
    23461 ttaccgctgc ggtgctcggt gggattggca gcattccagg ggcgatgatt ggtgggctga
    23521 tcctggggat tgcggaggcg ctctcttctg cctatctgag tacggaatat aaggatgtgg
    23581 tttcatttgc cctgctgatt ctggtgctgc tggtgatgcc gaccggtatt ctgggtcgcc
    23641 cggaggtaga gaaagtatga aaccgatgca tattgcaatg gcgctgctct ctgccgcgat
    23701 gttttttgtt ctggcgggcg tctttatggg cgtgcaactg gagctggatg gcaccaaact
    23761 ggtggtcgac acggcttcag acatccgttg gcagtgggtg tttatcggca cggcggtggt
    23821 ctttttcttc cagcttttgc gaccggcttt ccagaaaggg ctaaaaagcg tttccggacc
    23881 gaagtttatt ctgcccgcga ttgatggctc cacggtgaag cagaaactgt tcctcgtggc
    23941 gctgttggtg cttgcggtgg cgtggccgtt tatggtgtca cgtgggacgg tggatatcgc
    24001 cactctgacc atgatctaca ttatcctcgg tctcgggctg aatgtggttg ttggtctttc
    24061 tggtctgctg gtgctggggt acggcggttt ttacgccatc ggcgcttaca cctttgcgct
    24121 gctcaatcac tattacggct tgggcttctg gacttgtctg ccgattgccg ggttaatggc
    24181 agcggcggcg ggcttcctgc tcggctttcc ggtgctgcgt ctgcgcggtg attatctggc
    24241 gatcgttacc ctcggcttcg gcgaaattgt gcgcatattg ctgctcaata acaccgaaat
    24301 taccggcggc ccgaacggaa tcagtcagat cccgaaaccg actttcttcg gccttgagtt
    24361 cagccgtacc gcccgtgaag gcggttggga cacgttcagt aatttctttg gcctgaaata
    24421 cgatccctcc gatcgcgtca tcttcctgta tctggtggcg ttgctgctgg tggtgctaag
    24481 cctgtttgtc attaaccgcc tgctgcggat gccgctgggg cgtgcgtggg aagcgttgcg
    24541 tgaagatgag atcgcctgcc gttcgctggg cttaagcccg cgtcgtatca agctgaccgc
    24601 ttttaccatc agtgccgcgt ttgccggttt tgccggaacg ctgtttgctg cgcgccaggg
    24661 ctttgtcagc ccggaatcct tcacctttgc tgaatcggcg tttgtactgg cgatagtggt
    24721 gctcggcggt atgggatcgc agtttgcggt gattctggcg gcaattttgc tggtagtgtc
    24781 gcgcgagttg atgcgtgatt tcaacgaata cagcatgtta atgctcggtg gtttgatggt
    24841 gctgatgatg atctggcgtc cgcagggctt gctgcccatg acgcgcccgc aactgaagct
    24901 gaaaaatggc gcagcgaaag gagagcaggc atgagtcagc cattattatc tgtgaacggc
    24961 ctgatgatgc gcttcggcgg cctgctggcg gtgaacaacg tcaatcttga actgtacccg
    25021 caggagatcg tctcgttaat cggtcctaac ggtgccggaa aaaccacggt ctttaactgc
    25081 ctgaccggat tctacaaacc cactggaggc accattttac tgcgcgatca gcatctggaa
    25141 ggtttaccgg ggcagcaaat tgcccgcatg ggcgtggtgc gtaccttcca gcatgtgcgt
    25201 ctgttccgtg aaatgacggt gattgaaaac ctgctggtgg cgcagcatca gcaactgaaa
    25261 accgggctgt tctctggcct gttgaaaacg ccatccttcc gtcgcgccca gagcgaagcg
    25321 ctcgatcgcg ccgcgacctg gcttgagcgc attggtttgc tggaacacgc caaccgtcag
    25381 gcgagtaacc tggcctatgg tgaccagcgc cgtcttgaga ttgcccgctg catggtgacg
    25441 cagccggaga ttttaatgct cgacgaacct gcggcaggtc ttaacccgaa agagacgaaa
    25501 gagctggatg agctgattgc cgaactgcgc aatcatcaca acaccactat cttgttgatt
    25561 gaacacgata tgaagctggt gatgggaatt tcggaccgaa tttacgtggt caatcagggg
    25621 acgccactgg caaacggtac gccggagcaa atccgtaata acccggacgt gatccgtgcc
    25681 tatttaggtg aggcataaga tggaaaaagt catgttgtcc tttgacaaag tcagcgccca
    25741 ctacggcaaa atccaggcgc tgcatgaggt gagcctgcat atcaatcaga gcgagattgt
    25801 cacgctgatt ggcgcgaacg gggcggggaa aaccaccttg ctcggcacgt tatgcggcga
    25861 tccgcgcgcc gccagcgggc gaattgtgtt tgatgataaa gacattaccg actggcagac
    25921 ggcgaaaatc atgcgcgaag cggtagcgat tgtcccggaa gggcgtcgcg tcttctcgcg
    25981 gatgacggtg gaagagaacc tggcgatggg cggctttttt gccgaacgcg accagttcca
    26041 ggagcgcata aagtgggtgt atgaactgtt tccacgtctg catgagcgcc gtgttcagcg
    26101 ggcaggcacc atgtccggcg gtgagcaaca aatgctggcg attggtcgcg cgctgatgag
    26161 caacccgcgt ttgctgctac ttgatgagcc atcgctcggt cttgcgccga ttatcatcca
    26221 gcaaattttc gacaccatcg agcagctgcg cgagcagggg atgactatct tcctcgtcga
    26281 gcagaacgcc aaccaggcgc taaagctggc ggatcgcggc tacgtgctgg aaaacggcca
    26341 tgtggtgctc tccgataccg gcgacgcgct gctggcgaac gaggcagtga gaagtgcgta
    26401 tttaggcggg taataacacg ttgattgata aggagtcaaa agactccttt gagacaggtg
    26461 acaaatgtaa aattgcctga tgcgctgcgc ttatcaggcc tactgggtga gttgcaatat
    26521 attgaatttg cacgatcttg taggccggat aaggcgttta cgccgcatcc ggcatgaaac
    26581 gatgagtaat ctgtagagtt tgattcagac cttctatttt tccgcttatc cgtgccccat
    26641 ctcccatttt ccctcaccca cgccgtcacc gccttgtcat ctttctgaca ccttactatc
    26701 ttacaaatgt aacaaaaaag ttatttttct gtaattcgag catgtcatgt taccccgcga
    26761 gcataaaacg cgtgaattcg cgcattcggt acaacaagag agataaacga tgaaaccgtt
    26821 acattataca gcttcagcac tggcgctcgg actggcgtta atggggaatg cacaggcagt
    26881 gacgaccatt ccgttctggc attctatgga aggggaactg ggtaaagagg tggattctct
    26941 ggcccaacgt tttaacgccg aaaatccgga ttacaaaatt gtaccgacct ataaaggcaa
    27001 ctacgaacag aatttaagcg cggggattgc cgcatttcgt accggcaacg ctccggctat
    27061 tttgcaggtt tatgaagttg gcaccgccac catgatggca tcgaaagcca ttaaaccggt
    27121 atatgacgtg tttaaagagg cggggattca attcgatgag tcgcagtttg tgccgacggt
    27181 ttccggttac tactccgaca gcaaaacggg ccacttactc tcccagccat tcaacagctc
    27241 gactcccgtt ctctattaca acaaagacgc cttcaagaaa gcggggttag acccggaaca
    27301 gccgccgaaa acctggcagg atctggcgga ctatgccgcg aaactgaaag cctccggcat
    27361 gaagtgcggc tacgccagcg gctggcaggg ctggatccaa ctggaaaact ttagcgcttg
    27421 gaacggtctg ccgtttgcca gcaaaaacaa cggctttgac ggcacagatg cggtgctgga
    27481 gttcaacaag ccggagcagg tgaaacacat cgccatgctc gaggagatga acaagaaggg
    27541 cgacttcagc tacgtcggtc gtaaggatga atccaccgag aagttctata acggtgattg
    27601 cgcgatgacc accgcctctt ccggttctct tgccaacatt cgcgagtacg ccaaatttaa
    27661 ctacggcgta ggcatgatgc cttacgacgg cgatgcgaaa gatgcgccac aaaacgccat
    27721 tatcggcgga gccagcctgt gggtgatgca gggtaaagat aaagaaacgt ataccggtgt
    27781 ggcgaagttc ctcgatttcc tcgcgaagcc agaaaacgct gccgagtggc atcagaaaac
    27841 cggttatctg ccaatcacca aagcagcgta tgacctgacc cgtgagcagg gcttttatga
    27901 gaaaaaccca ggggcggata ccgcgacgcg tcagatgctg aataagccgc cgttgccgtt
    27961 caccaaaggg ctgcgtctgg gcaacatgcc gcagatccgc gtgattgtgg atgaagagct
    28021 ggagagcgtg tggaccggta agaagacacc acagcaggca ctggataccg ccgttgagcg
    28081 tgggaaccag ttactgcgcc gctttgagaa atcgacgaag tcttaatcag tgtaatgtcg
    28141 gatgcgtttc gcttatctga cctggcatcg cgtgtaggcc ggataagcga agcgcatccg
    28201 gcacagttca ggaattaacc gtaatgtcat catcccgtcc ggtgttccgc tcgcgctggc
    28261 tgccttatct gctggtcgcg ccgcagctca tcatcaccgt tatctttttt atctggcctg
    28321 cgggcgaagc gttgtggtac tcgctgcaaa gcgtcgatcc gtttggtttc tccagccagt
    28381 ttgtcggtct ggataacttc gtcacgctgt tccatgacag ctactatcta gactccttct
    28441 ggacgacgat aaaattcagc acctttgtca ccgtcagcgg tttgctggta tcgctgttct
    28501 ttgcggcgct ggtggagtac atcgtgcgcg gcagccgttt ctatcaaacc ttgatgctgc
    28561 tgccgtatgc cgtggctccc gccgttgccg ccgtattgtg gatcttcctg tttaaccccg
    28621 gtcgcgggct gatcacccat tttctcgctg agttcggcta cgactggaac cacgcgcaaa
    28681 acagcggtca ggcaatgttt ctggtggtgt ttgcctcggt gtggaagcaa atcagctaca
    28741 actttctgtt cttctatgcc gcgctgcact ccattccccg ttcgttgatc gaagccgcag
    28801 ccatcgacgg tgcagggccg attcgccgct tctttaagat tgcgctgccg cttatcgccc
    28861 cggtgagttt cttcctgctg gtagtgaacc tggtgtatgc cttcttcgac accttcccgg
    28921 tgatcgacgc cgccacgtcc ggcgggccgg ttcaggccac cacgacgctg atttataaga
    28981 tctaccgcga aggttttacc ggactggatc tggcttcgtc tgccgcacag tcggtggtgt
    29041 tgatgttcct cgtcatcgtg ctgacggtgg tgcagttccg ctatgttgaa agcaaggtgc
    29101 gttaccaatg attgagaacc gtccgtggct gacgatattc agccatacca tgctgatcct
    29161 cgggatcgcg gtgatcctct tcccgctgta cgtggcgttt gtcgcggcga cgctggataa
    29221 acaggccgtc tatgccgcgc cgatgacgct catccccggc acacatctgc tggaaaatat
    29281 ccacaacatc tgggttaacg gggtaggtac gaatagcgcg ccgttctggc ggatgttgct
    29341 taacagcttt gtgatggcgt tcagcattac gctcggcaaa attaccgtct cgatgctctc
    29401 ggcatttgcc attgtctggt ttcgttttcc gctacgtaac ctcttcttct ggatgatttt
    29461 tatcaccctg atgctgccgg ttgaagtacg tatcttcccg acggtggaag tcatcgccaa
    29521 cctgaagatg ctcgacagct acgccggttt aacgctgccg ctgatggcct cggcgaccgc
    29581 cacgtttctg tttcgccagt tctttatgac gctgccggat gaactggtgg aagcggcgcg
    29641 gatcgacggc gcatcgccaa tgcgcttctt ttgcgacatc gtttttccgc tctccaaaac
    29701 taatctggcg gcgctgtttg tgatcacctt tatttacggc tggaaccagt atttgtggcc
    29761 gttgttgatt attaccgacg tggatctcgg caccaccgtg gcagggatca aagggatgat
    29821 cgccactggc gaaggcacca cggaatggaa ctcagtgatg gcggcgatgt tgttaaccct
    29881 gatcccacca gtagtgattg ttttagtgat gcagcgtgcc ttcgtgcgcg gcctggtcga
    29941 tagtgagaaa taagatggca ggactgaaat tacaggcagt aaccaaaagc tgggatggca
    30001 aaacccaggt cattaaaccg ctgacccttg atgtggctga tggcgaattt atcgtgatgg
    30061 tcgggccgtc tggctgcggg aaatcgacgc tgctgcgtat ggttgccggg ctggagcggg
    30121 tgaccgaagg cgatatctgg atcaacgacc agcgcgtgac tgaaatggag ccgaaagatc
    30181 gcgggattgc gatggtgttc cagaactacg cgctttatcc gcatatgagc gtcgaagaaa
    30241 acatggcgtg ggggcttaaa attcgcggca tgggcaagca gcaaattgcc gagcgcgtta
    30301 aagaagcggc gcgcattctg gtgctggacg gtctgctcaa acgtcgccgc gtgagctatc
    30361 cggcggtcag cgtcagcgtg tagcgatggg ccgcgcgatt gtgcgcgatc cggcggtgtt
    30421 cctgtttgat gagccgctct ctaacctcga tgccaagctg cgcgtgcaga tgcgtcttga
    30481 actgcaacag ttgcaccgtc gcctgaaaac gacttcactc tacgttactc acgatcaggt
    30541 tgaaacgatg acgctcgccc agcgagtaat ggtgatgaac ggcggcgttg ccgaacagat
    30601 tggcacacca gttgaagtct acgaaaagcc cgccagcctg tttgtagcga gttttatcgg
    30661 cagtccggcg atgaacctgc tgacaggccg cgtgaataac gaaggcacgc atttcgaact
    30721 ggacggcggt attgagctgc cgctaaacgg tggctaccgt cagtatgccg ggcgtaaaat
    30781 gactctcggc attcgcccgg aacatattgt gctaagctcg caggcagaag gcggcgtacc
    30841 gctggtgatg gacacgctgg agatcctcgg cgcagataac ctggcgcacg gacgctgggg
    30901 cgagcagaag ctggtggtgc gactggcgca tcaggagcgc ccgacggcag gcagcacgct
    30961 gtggctgcat ctggcggaaa atcagctgca tctttttgat ggtgaaacag gacaacgagt
    31021 atgagtaact ggccttatcc ccgcatcatc gctcatcgtg gcggcggtaa gctggccccg
    31081 gaaaacaccc tggcggcaat cgacgtcggg gcaaaatacg gtcataagat gatcgaattt
    31141 gacgcgaagt tatcgaaaga tggcgagatc ttcctgctcc atgacgacaa tctcgaacgc
    31201 accagcaacg gctggggcgt cgcgggtgaa ctgaactggc aggatttact gcgcgtggat
    31261 gcgggcagtt ggtacagcaa agcgtttaaa ggtgagccgc tgccgttgct ttcgcaggtg
    31321 gcggaacgct gtcgcgaaca cgggatgatg gcgaatatcg aaatcaaacc caccactggc
    31381 actggaccat taacgggcaa aatggtggcg ctggcggcac gccaactgtg ggccggtatg
    31441 acgccgccgc tgctgtcatc gtttgagatt gatgctttag aagctgcaca gctggcggca
    31501 ccggaactgc cgcgtggttt attgcttgat gagtggcgcg acgactggcg cgaactgacc
    31561 gcgcggctgg gctgcgtctc tattcatctc aatcataagt tactcgataa agcgcgagtg
    31621 atgcagttga aagacgccgg attacggatt ctggtttata ccgtcaataa accccagcgc
    31681 gcggcagagt tgctgcgctg gggcgtggat tgcatctgta ccgatgcgat tgacgtgatt
    31741 ggtccgaact ttacggccca atagttttca acggaatgtc aggctgcggc gtgctgggct
    31801 gattcagcat gtcgccgttt ctcctctccg gcagcatatg ctgctgattc aacgaactat
    31861 ccggattacg gttgctgttt aacatcccgc cgttggtgtt gggcagcatt tgctgccggg
    31921 cgggatttcg ctcccccggc tgtgactgca acacccgctg agaattattg tttatctggt
    31981 tttctaaatg ctgctgttgc aactgagttt gcgttttcag ttgctgattc agcatccctt
    32041 tttgctggat ttgctgagtt tgcatctggg tttgcatccg ctgctggctg ggtatctgat
    32101 accccggctg gttagggttg ttcagagtat taatgggctg tgcaaagccg acaaacggca
    32161 ggagtgccgt aagaatcaga agtcgtttca tcgcgtatcc tcctctgaag atatccttta
    32221 agtttactcg cttcccgaca aaacgatgat taattcagag ttatatacca ggcttagctg
    32281 gggttgcccc ttaatctctg gagaataacg atgataaaac cgacgttttt acgccgggta
    32341 gccattgctg ctctgctctc aggaagttgt tttagcgccg tcgccgcgcc tcctgtttct
    32401 tacggcgtgg aggaagatat cttccatccg gtacgcgcga aacaggggat ggtggcgtct
    32461 gtcgatgcca ctgccaccca agtgggggta gatattctaa aggagggcgg gaatgccgtt
    32521 gatgccgccg tggcggtggg ctacgcgctg gcggtaacgc atccgcaggc agggaatctg
    32581 ggcggtggtg gttttatgct gatccgctcg aaaaatggca ataccaccgc tatcgatttc
    32641 cgcgagatgg cacccgctaa agcgacccgc gatatgttcc ttgatgacca gggcaacccg
    32701 gacagcaaaa aatcactcac ttcgcatctg gcttccggca cgcccggtac ggtcgctggt
    32761 ttctcgctgg cgttggataa gtacggcact atgccgttga acaaagtggt gcagcccgcg
    32821 ttcaaactgg cacgcgatgg ttttatcgtt aacgatgctt tggcagacga tctcaaaacc
    32881 tacggtagcg aagtgttgcc gaatcacgaa aacagcaaag ctatcttctg gaaagagggc
    32941 gaaccgctga aaaagggcga caagctggtg caggcgaacc tggcaaagag cctggagatg
    33001 attgccgaaa acggcccgga cgaattctat aaaggcacga tagcggaaca gattgcccag
    33061 gagatgcaga aaaacggtgg cttgatcact aaagaagatt tagcggcgta taaagcggtc
    33121 gaacgcacac cgataagtgg cgattatcgc gggtatcagg tttactccat gccaccgcca
    33181 tcctccggcg ggatccatat cgtacaaatc ctcaatattc tggaaaactt cgatatgaag
    33241 aaatacggat ttggcagcgc cgatgcgatg caaatcatgg cagaagcgga gaaatacgcc
    33301 tacgccgacc gctcggaata tcttggcgac ccggattttg tcaaagtacc gtggcaggcg
    33361 ctgaccaata aagcctatgc caaatctatt gccgatcaaa ttgatatcaa taaagcgaag
    33421 ccatccagcg aaattcgccc cggcaagctt gcgccttatg agagtaatca aactacccat
    33481 tactcagtgg tggataaaga tggtaacgcg gtggcggtga cctatacgct gaacaccacc
    33541 ttcggtacgg gcattgtcgc gggcgagagc ggtattctgc ttaataatca gatggatgat
    33601 ttctccgcta aaccgggcgt accgaacgtt tacgggctgg tgggcggtga tgccaacgcc
    33661 gtcgggccga ataaacgtcc gctgtcgtca atgtcaccaa cgattgtggt gaaagacggt
    33721 aaaacctggc tggtcaccgg tagccctggc gggagccgga tcatcactac agtgctgcaa
    33781 atggtggtga atagcatcga ttatggcatg aacgtcgccg aagcgaccaa tgcgccgcgt
    33841 ttccaccatc agtggttgcc ggacgagctg cgtgtcgaaa aagggtttag cccggatacg
    33901 ctcaagctgc tggaagcaaa aggtcagaaa gtggcgctga aagaggcgat gggcagtaca
    33961 caaagcatta tggttgggcc ggacggtgag ttgtacggcg catccgaccc gcgctcggtg
    34021 gatgatttaa cggcggggta ctaaggttag cggccctctt cgtgggaaga gggctatttt
    34081 gtcagggcaa gccgaaggta gcctttttta tttcgtaatc ctgtagatat tcttccagcg
    34141 gctttgccgt tcccagagaa tgaatttcac cactgtcttt atcaataata aaaggtgcgt
    34201 taccagctaa gcgcgcggcc tcatctccag tttcgagaaa ttctcgtgct tcgaaacaga
    34261 aataccagcc ctggctaaag cgtccatgta gagtaatgac gaccgggaga tctgcatcat
    34321 caaggtaatg gttcgctttc gcgaatgcgt cgtgataagt aatcataatt ataataaata
    34381 ttattgttga gtgttatatt attattcctg tgtgatacat tgagcaaaga cgtgttcatc
    34441 ttcgtcaaag atattattaa atgctggttt tgaaaaaagt tcatcggata agatatagtc
    34501 acgaaataag tatctgctaa tattttataa tttctttttc agaacgtcga acgggatttt
    34561 cttatttaag atatcagaat cttatgattc gggtaaaatt ctaaataaat caatatgtca
    34621 ttaaaatcat catagccatt agctatttcg gctaaaatag agactacatg tcttcggtcc
    34681 atctcactta aggagtgtag ttccgttgta agtttttcca tagcttgcac tgctaaattt
    34741 cgaacaagga attttctgct ggtaatctct aaaaagatgg catggtttac aatgattttt
    34801 gtttcctttt gattattatg aacaactgtc catgatttcg tttaagaatg aagagaaatc
    34861 acta
//
LOCUS       DAJVUN010000021        34693 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.021, whole genome shotgun sequence.
ACCESSION   DAJVUN010000021 DAJVUN010000000
VERSION     DAJVUN010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34693
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.021"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            193..2040
                     /gene="ldtD"
                     /locus_tag="OQQ76_000805"
     CDS             193..2040
                     /gene="ldtD"
                     /locus_tag="OQQ76_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1967396.1"
                     /translation="MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV
                     SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD
                     MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY
                     LHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA
                     AMHESLLALLSDTKPWPQLTGKATLRLGQWSNDVPALREILQRTGMLDGGPKITLPGD
                     DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL
                     GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNG
                     NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH
                     GYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL
                     HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI
                     RQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR"
     gene            2221..2769
                     /locus_tag="OQQ76_000806"
     CDS             2221..2769
                     /locus_tag="OQQ76_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HCS1967397.1"
                     /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN
                     LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR
                     KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
                     GGVGYYPRSNFVHIDTGPARHW"
     gene            2796..3443
                     /gene="gloC"
                     /locus_tag="OQQ76_000807"
     CDS             2796..3443
                     /gene="gloC"
                     /locus_tag="OQQ76_000807"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003035823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase GloC"
                     /protein_id="HCS1967398.1"
                     /translation="MNYRIIPVTAFSQNCSLIWCEQTRLTALVDPGGDAEKIKQEVDD
                     SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEEC
                     QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR
                     SDFPRGDHNQLISSIKDKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW"
     gene            complement(3665..4855)
                     /gene="aspC"
                     /locus_tag="OQQ76_000808"
     CDS             complement(3665..4855)
                     /gene="aspC"
                     /locus_tag="OQQ76_000808"
                     /EC_number="2.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009653304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate transaminase"
                     /protein_id="HCS1967399.1"
                     /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP
                     VLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG
                     GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
                     ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA
                     RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK
                     AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA
                     NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI
                     VAVL"
     gene            complement(5037..6128)
                     /gene="ompF"
                     /locus_tag="OQQ76_000809"
     CDS             complement(5037..6128)
                     /gene="ompF"
                     /locus_tag="OQQ76_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpF"
                     /protein_id="HCS1967400.1"
                     /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHY
                     FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK
                     TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT
                     YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR
                     TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT
                     QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD
                     YIINQIDSDNKLGVGSDDTVAVGIVYQFQ"
     gene            complement(6731..8131)
                     /gene="asnS"
                     /locus_tag="OQQ76_000810"
     CDS             complement(6731..8131)
                     /gene="asnS"
                     /locus_tag="OQQ76_000810"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HCS1967401.1"
                     /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG
                     SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW
                     VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV
                     STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET
                     YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA
                     VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG
                     VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN
                     VRDVIPFPRTPRNASF"
     gene            complement(8300..9502)
                     /gene="pncB"
                     /locus_tag="OQQ76_000811"
     CDS             complement(8300..9502)
                     /gene="pncB"
                     /locus_tag="OQQ76_000811"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706850.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HCS1967402.1"
                     /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD
                     DLLGIYADAIREQIQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN
                     DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL
                     TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ
                     AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR
                     YQGLRHDSGDPVEWGEKAIAHYKKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL
                     SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD
                     LPHIKKAS"
     gene            9768..12380
                     /gene="pepN"
                     /locus_tag="OQQ76_000812"
     CDS             9768..12380
                     /gene="pepN"
                     /locus_tag="OQQ76_000812"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HCS1967403.1"
                     /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR
                     HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPEHFTLKIVNEISPAA
                     NTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKTKYPFLLSNGN
                     RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG
                     NLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV
                     LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL
                     GSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIH
                     TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV
                     KDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVISLQKGGHPVNS
                     VLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD
                     AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNE
                     MAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRN
                     ACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH
                     QDGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFH
                     AEDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLEN
                     LSGDLYEKITKALA"
     gene            complement(12423..13174)
                     /gene="ssuB"
                     /locus_tag="OQQ76_000813"
                     /pseudo
     CDS             complement(12423..13174)
                     /gene="ssuB"
                     /locus_tag="OQQ76_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309043.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonates ABC transporter ATP-binding
                     protein"
     gene            complement(13171..13962)
                     /gene="ssuC"
                     /locus_tag="OQQ76_000814"
                     /pseudo
     CDS             complement(13171..13962)
                     /gene="ssuC"
                     /locus_tag="OQQ76_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415454.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
     gene            complement(13973..15118)
                     /gene="ssuD"
                     /locus_tag="OQQ76_000815"
                     /pseudo
     CDS             complement(13973..15118)
                     /gene="ssuD"
                     /locus_tag="OQQ76_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706856.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent alkanesulfonate monooxygenase"
     gene            complement(15115..16074)
                     /gene="ssuA"
                     /locus_tag="OQQ76_000816"
     CDS             complement(15115..16074)
                     /gene="ssuA"
                     /locus_tag="OQQ76_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter
                     substrate-binding protein SsuA"
                     /protein_id="HCS1967404.1"
                     /translation="MRNIIKLALVGLLSVSTIAVAAESSPEALCIGYQKGSIGMVLAK
                     SHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVS
                     VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
                     TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPY
                     AEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKP
                     VNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL"
     gene            complement(16067..16642)
                     /gene="ssuE"
                     /locus_tag="OQQ76_000817"
     CDS             complement(16067..16642)
                     /gene="ssuE"
                     /locus_tag="OQQ76_000817"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HCS1967405.1"
                     /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAP
                     EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV
                     LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTR
                     LDTALETFWQALHRRDVQVPDLLSLRGNAHA"
     gene            16998..17396
                     /locus_tag="OQQ76_000818"
     CDS             16998..17396
                     /locus_tag="OQQ76_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005007021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1967406.1"
                     /translation="MKKSVLTAFITVVCATSSVMAADDNAITDGKVTFNGKVIAPACT
                     LVAATKDSVVTLPNVSATKLQTNGAVSGVKTDVPIALEGCDVTVTKNATFTFSGTADG
                     VQPTAFANQATTDAARMLLYKCICQMVLHR"
     gene            17622..18330
                     /locus_tag="OQQ76_000819"
                     /pseudo
     CDS             17622..18330
                     /locus_tag="OQQ76_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415459.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
     gene            18355..20955
                     /locus_tag="OQQ76_000820"
     CDS             18355..20955
                     /locus_tag="OQQ76_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706863.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis usher protein"
                     /protein_id="HCS1967407.1"
                     /translation="MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFF
                     KDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTE
                     SLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
                     GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNS
                     TWSRSSGQTAEWKNLSSYLQRAVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNM
                     LPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVE
                     IKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGP
                     WGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLY
                     AKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFNDGDDEDTPMWSRYYNLFY
                     TKRGKLQVNISQQLGDYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSLGVSWNY
                     SKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLG
                     LTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNY
                     ALSGSLVAHSQGITLGQSLGETNVLIAAPSAENTRVANSTGLKTDWRGYTVVPYATSY
                     RENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF
                     GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINS
                     AITRMDAICR"
     gene            20946..22016
                     /locus_tag="OQQ76_000821"
     CDS             20946..22016
                     /locus_tag="OQQ76_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1967408.1"
                     /translation="MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYSGQCHTTQGNPYI
                     GVNFGVKTLEEEENTAGVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVY
                     LGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASG
                     NSGSFSLKILQPFVGSVVIPPMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSL
                     GSCSVNAGETIEVDLGDVFAANFRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSL
                     TATTDPSYPQAIKTSRPGVGVVVTDSQNNIISPAGGTLPLSIPDDADSIARMNVYPVS
                     TTGVPPETGRFEATATVRINFD"
     gene            22028..22570
                     /locus_tag="OQQ76_000822"
     CDS             22028..22570
                     /locus_tag="OQQ76_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1967409.1"
                     /translation="MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDV
                     ATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAP
                     TLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
                     KAGATGGNATAVLYFDLVYQ"
     gene            22578..23093
                     /locus_tag="OQQ76_000823"
     CDS             22578..23093
                     /locus_tag="OQQ76_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415463.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1967410.1"
                     /translation="MLKRIIWILFLLGLTGGCELFAHDGTVNISGSFRRNTCVLAQDS
                     KQINVQLGDVSLTRFFHGNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSI
                     ESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKV
                     NASATFVLHYD"
     gene            23059..23796
                     /locus_tag="OQQ76_000824"
     CDS             23059..23796
                     /locus_tag="OQQ76_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1967411.1"
                     /translation="MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRF
                     IFPADRESISILLTNTSQESWLINSKINRPTRWAGGDASTVPAPLLAAPPLILLKPGT
                     TGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
                     DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQ
                     AIAPCHVAWRAINDYDGLSAKKEQNLP"
     gene            23907..24917
                     /gene="pyrD"
                     /locus_tag="OQQ76_000825"
     CDS             23907..24917
                     /gene="pyrD"
                     /locus_tag="OQQ76_000825"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HCS1967412.1"
                     /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA
                     KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR
                     LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME
                     KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI
                     APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST
                     EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT
                     HI"
     gene            25091..25633
                     /gene="zapC"
                     /locus_tag="OQQ76_000826"
     CDS             25091..25633
                     /gene="zapC"
                     /locus_tag="OQQ76_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapC"
                     /protein_id="HCS1967413.1"
                     /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAF
                     SPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNALVAIRYLKPQMPKSWHFVSHG
                     EMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKI
                     MNDRLKPQVNVDSFSLEQAV"
     gene            complement(25630..26739)
                     /gene="ycbX"
                     /locus_tag="OQQ76_000827"
     CDS             complement(25630..26739)
                     /gene="ycbX"
                     /locus_tag="OQQ76_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein YcbX"
                     /protein_id="HCS1967414.1"
                     /translation="MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT
                     FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA
                     PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
                     RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ
                     KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA
                     ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ
                     ILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLAR"
     gene            26983..29091
                     /gene="rlmKL"
                     /locus_tag="OQQ76_000828"
     CDS             26983..29091
                     /gene="rlmKL"
                     /locus_tag="OQQ76_000828"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HCS1967415.1"
                     /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV
                     YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI
                     RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH
                     LRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGL
                     HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR
                     LAGIAELITFEVKDVAQLTNPLLKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK
                     NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA
                     EDYANRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYSDWVVVQEYAPPKTI
                     DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNA
                     HLWVNLTDYLDTGLFLDHRITRRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTT
                     VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR
                     MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT
                     LSQDFARNRQIHNCWLITAA"
     gene            29103..31010
                     /locus_tag="OQQ76_000829"
     CDS             29103..31010
                     /locus_tag="OQQ76_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1967416.1"
                     /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST
                     LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH
                     DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG
                     WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN
                     MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQL
                     VKDFSAQVLRGDKIVLIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA
                     ELDPDKTVMDNIAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLL
                     LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW
                     IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKL
                     QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER
                     WEYLEALKNGG"
     gene            31140..32393
                     /gene="pqiA"
                     /locus_tag="OQQ76_000830"
     CDS             31140..32393
                     /gene="pqiA"
                     /locus_tag="OQQ76_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiA"
                     /protein_id="HCS1967417.1"
                     /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW
                     DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF
                     FLLFVQLVPSFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV
                     KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR
                     QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM
                     VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG
                     KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM
                     TMFSAMTFDPRLSWDRQPESEHEES"
     gene            32398..34038
                     /gene="pqiB"
                     /locus_tag="OQQ76_000831"
     CDS             32398..34038
                     /gene="pqiB"
                     /locus_tag="OQQ76_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706874.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HCS1967418.1"
                     /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE
                     VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT
                     VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV
                     ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTSNVRF
                     WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS
                     IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR
                     IPVLIRIEPERLKMQLGENTDVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT
                     PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTFSESQRT
                     MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL
                     DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ"
     gene            34035..34598
                     /gene="pqiC"
                     /locus_tag="OQQ76_000832"
     CDS             34035..34598
                     /gene="pqiC"
                     /locus_tag="OQQ76_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HCS1967419.1"
                     /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR
                     LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW
                     VVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
                     YDEMVKVLAGVWSQEAASIAQEIKRLP"
BASE COUNT         8781 a         8430 c         9024 g         8458 t
ORIGIN      
        1 cataacggcg cgcttttctt taaacttctt tacattaggt tatgtaaaaa cgtatcggcg
       61 tttatatact gaagataagc ctgatgagta acaggcttgc tcgtcatact ttcgtgagta
      121 ttggcgttgt acaggcaagt cgtaaaataa cagcctggct attcagagta tgataaaaac
      181 agggggcaag ggatgttgct taatatgatg tgtggtcgtc ggctgtcggc aatcagtttg
      241 tgcctggccg taacattcgc tccactgttc aatgcgcagg ccgatgagcc tgaagtaatc
      301 cctggcgaca gcccggtggc tgtcagtgaa cagggcgagg cactgccgca ggcgcaagcc
      361 acggcaataa tggcggggat ccagccattg cctgaaggtg cggcagaaaa agcccgcacg
      421 caaatcgaat ctcaattacc cgcaggttac aagccggttt atcttaacca gcttcaactg
      481 ttgtatgccg cacgcgatat gcaacccatg tgggaaaacc gtgatgctgt taaagccttc
      541 cagcaacagc tggcagaggt ggcgattgcc ggtttccagc cgcagtttaa taaatgggta
      601 gagttactga ccgatcctgg tgttaacggg atggcacgcg acgtagtgct ctctgatgcg
      661 atgatgggct atctccattt cattgcaaat attccggtca aaggcactcg ctggctatat
      721 agcagtaaac cttatgcact tgcaacgccg ccgctctcgg tgattaacca atggcagctg
      781 gcgctggata aaggtcaatt gcctacgttt gttgcaggac tggcaccgca gcatccgcaa
      841 tatgcggcga tgcatgaatc gttactggcc ttactcagtg acaccaaacc gtggccccaa
      901 ctgaccggca aagcaacgtt gcgcctaggg cagtggagta acgacgtacc ggcgttgcgc
      961 gaaatattgc aacgcacagg catgttggac ggggggccga aaattactct acctggcgat
     1021 gacacgccaa ctgacgcggt agtcagccca tccgctgtta ctgttgaaac agcagaaact
     1081 aagccgatgg acaagcaaac gacgtctcgt agtaaacctg cgcctgccgt tcgcgccgcc
     1141 tacgataatg aactggtgga agccgttaaa cgttttcagg catggcaagg attgggggca
     1201 gatggtgcta ttggcccggc aacacgtgac tggttaaacg taacgcccgc ccagcgtgct
     1261 ggcgtgttgg ctctcaacat ccagcgattg cgcttgctgc caacagagct ttctaccggg
     1321 atcatggtta acattccggc ctattcgctg gtctactatc agaacggcaa tcaggtgctg
     1381 gattcgcgag tcattgtcgg tcgccccgat cgcaaaacgc cgatgatgag cagtgccctt
     1441 aacaacgtag tggtaaaccc gccgtggaac gtacctccaa ctctggcacg caaagatatt
     1501 ctgccaaaag tgcgcaacga tccgggatat ctcgaaagcc atggctatac ggtgatgcgt
     1561 ggctggaaca gcagagaagc gattgaccca tggcaggttg actggtctac aatcacggcc
     1621 tcgaatttac cgttccgctt ccagcaggct ccaggcccac ggaactcgct ggggcgctat
     1681 aaattcaata tgccgagttc agaggccatt tatttgcatg acacgccgaa ccacaatctg
     1741 ttcaagcgtg atacacgcgc attgagctca ggctgtgtac gagtgaataa agcttccgat
     1801 ctggcgaata tgctgttgca ggatgcaggc tggaatgaca aacgtatttc tgatgcgctg
     1861 aagcagggtg atacacgtta cgtcaatatt cggcagtcga ttccggtgaa tctctactac
     1921 ctgacggcct ttgttggtgc agatggtcgt acccagtatc gtacagatat ttacaattat
     1981 gatctgcctg cgcgatccag ctcgcaaatc gtatcgaaag cggaacaatt aatcaggtaa
     2041 atgaagtagt tcggggaaat cagttgtcgt aataattagc atgattgggg gcgattctct
     2101 gcagcccccg tcactgctgg ggttgagtca tcttgacgtc tgctttacgg gcggttaagg
     2161 tgcctcttgt gcgccagaag tgcatataaa cgataacatt gacctgtaga cttgattatc
     2221 atggacaaat tcgacgctaa tcgccgcaaa ttgctggcgc ttggtggcgt tgcactcggt
     2281 gccgccatcc tgccgacccc tgcgtttgca acactctcta ccccacgccc gcgcattttg
     2341 acactcaata atcttcatac cggagagtca atcaaagcgg agtttttcga tggcagaggc
     2401 tatattcagg aagaattggc aaaacttaac cattttttcc gcgattaccg cgcgaacaaa
     2461 ataaagtcca tcgacccagg attattcgac cagttgtatc gcctgcaagg gttgttaggc
     2521 acgcgcaaac cggtgcaact catttccggt tatcgttcca ttgataccaa caatgaacta
     2581 cgcgcccgca gccgtggagt agcgaagaaa agctatcaca ctaaaggcca ggcgatggat
     2641 ttccatattg aaggtatcgc gttaagcaat attcgcaaag ccgcgttatc tatgcgcgca
     2701 ggtggtgtag gatattaccc acgtagtaac tttgtgcata ttgataccgg gccagcacgg
     2761 cactggtagc aatcgcttaa cgaaacaggg gcagtatgaa ctatcgtatt attccggtca
     2821 ccgcattctc ccagaactgt tcattaatct ggtgtgaaca aacccgtctg accgcactgg
     2881 tcgatcctgg cggcgatgcg gaaaaaatca aacaggaagt tgatgacagc ggcctgacac
     2941 tgatgcagat cctgctgacg catggtcatc tggaccacgt tggcgcagcg gcggaactgg
     3001 cgcaacatta cggcgtgccg gtttttggcc cggaaaaaga agatgagttc tggctgcaag
     3061 gcttgcctgc gcaaagtcgt atgtttggtc tggaagagtg ccagccgctg acgccagatc
     3121 gttggctgaa cgaaggcgat accatcagca taggaaatgt gactttacag gtgttacatt
     3181 gccctgggca tacgccgggt catgtcgtgt tttttgatga tcgggcaaag ctgctgattt
     3241 ctggcgatgt tattttcaaa ggcggagtag ggcgcagtga cttcccgcgt ggcgatcata
     3301 atcaactgat ttcttcaatc aaagataaat tgctgccact gggggatgac gtgacattta
     3361 ttccgggtca cggaccatta tccacacttg gttatgaacg cctgcataat cccttcctgc
     3421 aagacgaaat gcccgtctgg taaggcacat aaaaaagccc gcttttaatg cgggcctgga
     3481 tttctggcaa agtgcgcttt gtttatgccg gatgcggcac gagcgcctta tccggcctac
     3541 aaaatcgtgc aaattcaaaa tattgcaggg gacgcgtagg cctgataagc gtagcgcatc
     3601 aggcaatgtt gcgtttgtca tcagtctcag cccgcttttc agcgggcttc attgttttta
     3661 atgcttacag cactgccaca atcgcttcgc acagcggagc catgttatct ggtgtcatcc
     3721 cggccacatt tacgcgacca gaagcaaccg catatacgcc aaactcttcg cgcagacgca
     3781 gcacttgttc ttttgtcagg ccactgaagg agaacatgcc gttctgtttg atgataaagc
     3841 tgaagtcgcg gtttgcgcct ttttcctgca gcgtattgac gaacaactga cgcatacgct
     3901 gaatacgctg gcgcatatca gtcagctctt gttcccaaat cgcacgtaac gcatcgttgc
     3961 tcaggatggt ggcaacaaca gaagcgccgt gtgctggtgg gttagagtag ttagcgcgaa
     4021 tcgccgcttt catttggctg aatgcgcgat caacggtttc actgtcggca gcaaccagag
     4081 tacaagcgcc aacacgctcg ttgtacaggc caaagttttt agagtaggaa ctggcaacaa
     4141 tcagctcttt atgcatagcc gcgaaagcgc gcagtccttc agcatcttct tccagaccac
     4201 gggcaaaacc ctggtaagcg aagtcaaaca gcggtaacca gcctttctca acggagagtt
     4261 gtgccagtgt ctgccattgt tccagtgtag ggtcgatacc ggttgggtta tggcagcagc
     4321 catggaacag cactacgtcg ccagcctgag cttcattcag gctgttaatc agtgcatcga
     4381 agtcaagagt gtgattttcc gcatcataat aagcgtattc acgaacttcc agacctgcag
     4441 agttaaagac gctcttatgg ttcggccagc ttgggttgct cacccacact cgcttaacgc
     4501 tggtattttt tgccaggaaa tcggcagcta cgcgtagtgc gccagtgccc cccggagtct
     4561 gtgccgtgcg agcacgtttg tcattgatca gggcgctacc tttaccaaac agcagttcct
     4621 gagtgcagcg accaaattca gggatgccgt caatgccgag gtaatttttg gtggtttcat
     4681 tttcgagcag atactgttca gcctttttca cgctggtcag taccggggtt ttgcccgtct
     4741 catctttata gacaccaatc ccgaggttaa ttttgccggg acgttcatcg gcacgaaaca
     4801 gatcggccag gcccagaatc gggtcggcag gagcggcggt aatgttctca aacatgacga
     4861 ggttccatta tggttacaga agggaagtcc gctatcaggg taacgggaga tttacaaaat
     4921 tccaactatt actgatgaaa acgcaggctg tttttgcaag acgtgagatt gctctggaag
     4981 gtataaaaaa aacaggacca aagtcctgtt ttttcggcat ttaacaaaga ggtgtgctat
     5041 tggaactggt aaacgatacc cacagcaacg gtgtcgtctg aacctacgcc cagtttgttg
     5101 tcagaatcga tctggttgat gatgtagtca acataggtgg acatgttttt gttgaagtag
     5161 taggttgcgc ccacttcaaa gtagttcacc agatcaacat caccgatacc ttctacgtct
     5221 ttcgctttag atttggtgta agcgatggac ggacgcagac cgaaatcgaa ctggtattgt
     5281 gcaactaaca gaacgtcttg cgttttgttg gcgaagccgc tggtgtttgt aaatttatta
     5341 gtgatcggcg tagcgttacg ggtttcaccg tagttcgctg ccaggtagat gttgttcgcg
     5401 tcgtacttca gaccagtagc ccactgttca gcttttttac cgttgccaag aggttgagct
     5461 tcttgcaggt tggtacggtc agctgcacca taagcaccaa cgataccaaa gccttcgtat
     5521 tcgtagctga tagaaccgcc aacaccgtcg ccgttagaac ggcgtgcagt gtcacgctcg
     5581 tttttaccca ggtactgaac agcgaagttc aggccatcaa ccagaccaaa gaagttggag
     5641 ttacgatagg tagcaacgcc gccaacacga ccaacgaaga agtcatcgct gtatgcagta
     5701 tcaccaccaa attctggcag catatcggtg taacccagtg catcataaac cacaccgtag
     5761 ttacggccgt aatcgaaaga accaacgtca gcgtatttaa gacccgcgaa tgccagacgc
     5821 gttttgttac cagtttgagc gtcagcgcct tcagagttgt taccttggaa gttatattcc
     5881 cactgaccat aaccggtcag atcggaattg atttgagttt cccctttaaa accaagacgg
     5941 gcataggtca tgtcgccatt gccaccgtaa ctgttttcac cgttaccctt ggaaaaataa
     6001 tgcagaccaa cagctttacc gtacagatct actttgttgc catctttgtt atagatttct
     6061 gcagcgtttg cagtacctgc tactaacaga gcagggacga tcactgccag aatattgcgc
     6121 ttcatcatta tttattaccc tcatggtttt ttttatgaca cctgccactg ccgtcaataa
     6181 gttctgtcaa taaaaattta cggaactatt gatgagagtt tggtgtcttt atgtgtctgc
     6241 aggcatcttt ccattcaaac taacgtttcg ctaccgtgaa agtgctgcaa agataaagat
     6301 ttagtttcaa aaagaaaaaa tatgtaatca aaagtaaaaa attaaggaac tttgtgaaca
     6361 ccgtcatatt tccatagaaa cgtgatgata tttacagcaa tttttatcta tttatatgat
     6421 ttacttatat ttaaattaac taagcggaaa ttttgtttct gatggaaact ttatcgacct
     6481 ggcacaaaat cctctttcag acatccagaa tgccaaaaaa tagtatgaaa attgtgctat
     6541 cagctaagaa aaaactaatc cgcaataaga atgcgggtta ttttttgtgc gtaaatgttg
     6601 caatgtaata ttccgtaaca ggatgatcgt tatggcgggg ttgcaaatag attgcttgac
     6661 ttaacaaaca gataacttga cagaaaggat aaaaaagagc cagcaggcgc tggctctttg
     6721 aggaagaaaa tcagaagctg gcgttgcgcg gagtacgtgg gaacggaatc acatcacgca
     6781 cgttttgcac gccagttacg taagcaatca ggcgttcaaa accaagaccg aaacctgaat
     6841 gcggaacagt accgtagcga cgcagatcgc gataccacca gtaatcttct ttattcaggc
     6901 ccatttccag catacgctcg tccagaacgt ccagacgttc ttcacgctgg gagccaccaa
     6961 tgatctcacc gatgcccgga gccagaacgt ccatagccgc aacggtttta ccgtcttcgt
     7021 tgaggcgcat atagaacgct ttaatatctt tcggatagtt tttaaccact accggtgctt
     7081 taaagtgttc ttccgccaga taacgctcat gctcagaaga gagatcgacg ccccagtaaa
     7141 ccgggttttc aaacttcctg ccgcagtttt cgagaatggt cactgcgtcg gtgtaatcca
     7201 cctgcgcgaa atcggcctca atgaagcgtt ccagacgtga aacggcatct ttatctacgc
     7261 gttcagcgaa gaatttcatg tcgtctgcgc gttcttcgag aaccgctttg aagacatatt
     7321 tcagcatggc ttcagccaga cccgcgatat cgttcaggtt agcaaacgcc acttccggct
     7381 ccagcatcca gaattccgcc aggtgacggc tggtgttgga gttttcagca cggaaagtcg
     7441 ggccgaaggt ataaattttg gataatgcgc aagcgtaggt ttcgccgttc aactggccag
     7501 atacggtcag gaaagactct ttaccaaaga agtctttgtc gaaatccact ttgccctgat
     7561 cgttacgcgg caggttttcc agatccagcg tagaaacgcg gaacatttcg cctgcacctt
     7621 cggtatcaga tgcggtaatc agtggcgttg aaacccagaa gaatccctgc tcgttaaaga
     7681 agcgatgcag cgcctgcgcc agcgtatggc gaacgcgcgc gacggcacca atcaggtttg
     7741 tgcgcggacg caggtgagcg acttcacgca gatactcaat gctgtggcgt tttgccgcca
     7801 tcgggtaagt gtctggatct tcaacccaac cagcaacttc aactttgctg gcctgaattt
     7861 caaattgttg cccctggccc ggcgacgcca cgactttacc cgtcacaatg accgagcagc
     7921 cggtggtcag acgcaggacg tcttcattgt aattgggcag agaattattg atgacagcct
     7981 gtacaggatc aaagcaggaa ccgtcataaa cggcgaggaa ggagatgcca gcttttgaat
     8041 ctcggcgggt acgtacccat ccgcgtacgg tgacttcgct gtcaacggct acgcggccct
     8101 ggagtacgtc ggctacaggc acaacgctca taatattctc tctgttaata gtcggaaaaa
     8161 ataaacactt gtccacccgt aaatgggggg atacctatgt tacctggcat ctgcaatcag
     8221 acaagcagaa ttcgcaaatg cagcgaaaga tttcggaatt aaaggtaaaa aaagggagcc
     8281 gattagctcc ctgatgatat taactggctt ttttaatatg cggaaggtcg aacgctttgc
     8341 gcagcgcccg aacaaacgct ttatcatggc agatagtttt gccagggctg tcagaaagtt
     8401 tcgccaccgg tttaccgtta cactctacca acttaatcac aatattcagg ggttttacct
     8461 gggggatatc gcaggtcagg cgagtcccaa taccaaaact taattgcacg cgggaagaga
     8521 agtggcggta tagctcaacc gctttgcgta aatccagatt gtcagagaaa accagcgttt
     8581 tactctgtgg atcaattccc agctttttat aatgtgcaat ggctttttca ccccattcaa
     8641 ccgggtcgcc agagtcatga cgcaggccct gataccgact ggcgaactcg acaccgaaat
     8701 cacgcaggaa agcatccata gtgatgcagt cggttaatgc aatgccaagt tggtcgggat
     8761 attcttccag ccaggcagca agtgcagctc gctggctgtt ggctaggtcc gggctgattt
     8821 gctgatgtgc ctggaaccat tcgtgcgcct gtgttcccat cggcgtgagg gaaagccgac
     8881 gcgccagatc gtagttgctg gtgcccacga accaggattc ctgttgcaga cgcttaacga
     8941 tggtttcttg tacttcgcga gaaaaacggc gacgggtgcc aaaatccatc agatggaagc
     9001 gcgacatatc aagaccggcg gttaacgccg agaagtcgac taatttgctt tccagcgtgt
     9061 cgagggcttg cgcaacgtcg gcctgcggtg agcgatagcg atgtaccatt tcactgataa
     9121 ccgccagcaa aggaacttcc cagaggatga cttcacgcca cggaccgctt aagcgaatat
     9181 ccagcttgcc attatcgttg gacacggtga cttgttccgg gttaaagcgg aattcgcgta
     9241 accagttaag atagtcggcc ttaaagaaag gcagggcaga gagccactga tattcatcat
     9301 cctgcaggcg caggtgctgc atcgcctgaa tctgttcacg aatagcatcg gcataaatac
     9361 ccagcagatc gtcacctcgg caacgaaact ccgccgcgac atgcacatcg taatagtgat
     9421 gaaacacggc ttgctgcata tgcaacttat aagcatctgt atccagcaac gagtgcagaa
     9481 caggagaagc gaattgtgtc ataggtgcgc agtagcatcc tcgtacagga gcgtttagta
     9541 caataaacat cttcaggaac tgctggagta taccttgttt cgcaatttat tgaaccccga
     9601 tcacaccata tgccaccttt ctggtcgatg gcattacgcg gtgtatgtta taaaaatgta
     9661 gcaataaagg cgtttgtacc tgaaaagatg aagattctgc atagcgcgat ttacgcaaca
     9721 ggaatagact gaacaccaga ctctataaaa gatgctaaag gttatttatg actcaacagc
     9781 cacaagccaa ataccgtcac gattatcgtg cgccggatta ccagattact gatattgact
     9841 tgacctttga cctcgacgcg caaaagacgg tcgttaccgc ggtcagccag gctgtccgtc
     9901 atggtgcatc agatgctccg cttcgtctca acggcgaaga cctcaaactg gtttctgttc
     9961 atattaatga tgagccgtgg accgcctgga aagaagaaga gggcgcactg gtcatcagta
    10021 atttgccgga gcattttacg cttaagatcg ttaatgaaat aagcccggcg gcgaataccg
    10081 cgctggaagg gctttatcag tcaggcgatg cgctttgcac ccagtgtgaa gccgaaggtt
    10141 tccgccatat tacgtattat ctcgaccgcc cggacgtgct ggcgcgtttt accaccaaaa
    10201 ttattgccga taaaaccaaa tatcccttcc tgctttccaa cggtaaccgc gttgcgcaag
    10261 gtgaactgga aaacggacgc cattgggtac agtggcagga cccgttcccg aaaccgtgct
    10321 acctgtttgc gctggtggca ggcgactttg atgtactgcg cgacaccttt accacgcgtt
    10381 ctggtcgcga agtggcgctg gagctgtacg tcgatcgcgg caaccttgat cgcgcgccgt
    10441 gggcgatgac ctcgctgaaa aactcaatga aatgggatga agaacgcttc ggcctggagt
    10501 atgacctcga catctatatg atcgtcgcgg tggatttctt caatatgggc gcaatggaga
    10561 ataagggttt gaatatcttt aactccaaat atgtgctggc ccgcaccgac accgccactg
    10621 acaaagatta cctcgatatt gaacgcgtta tcggccatga atatttccat aactggaccg
    10681 gtaaccgagt cacctgccgc gactggttcc agctcagcct gaaagaaggt ttaaccgtct
    10741 tccgcgatca ggaattcagc tctgaccttg gttcccgtgc agttaaccgc atcaataatg
    10801 tgcgcaccat gcgcggattg cagtttgcgg aagacgccag cccgatggcg cacccgatcc
    10861 gcccggacat ggtcattgag atgaacaact tctataccct gaccgtttac gagaagggcg
    10921 cggaagtgat ccgtatgatc cacaccctgc tgggcgaaga aaacttccag aaagggatgc
    10981 aactctattt cgagcgccat gatggcagcg cggcaacctg cgacgacttt gtgcaggcga
    11041 tggaagatgc gtcgaatgtc gatctctccc atttccgccg ttggtacagc cagtccggca
    11101 cgccgattgt gaccgtcaaa gacgactaca atccggaaac cgagcagtac accctgacca
    11161 tcagccagcg cacgccagcc acgccggatc aggcagaaaa acagccgctg catattccgt
    11221 ttgccatcga attgtatgac aacgaaggca aagtgatctc gttgcagaaa ggcggtcatc
    11281 cggtgaattc cgtgctgaac gtcacccagg cggaacagac ctttgttttt gataatgtct
    11341 acttccagcc ggtgcctgcg ctgctgtgcg aattctctgc gccagtgaaa ctggaatata
    11401 agtggagcga tcagcaactg accttcctga tgcgtcatgc gcgtaatgat ttctcccgct
    11461 gggatgcggc acaaagcctg ctggcaacct acatcaagct gaacgtcgcc cgacatcagc
    11521 aagggcagcc gctgtctctg ccggtacatg tggctgacgc tttccgcgca gtgctgctcg
    11581 atgagaagat tgatccggcg ctggcggcag aaatcctgac gctgccttct gtcaatgaaa
    11641 tggctgaact gttcgatatc atcgacccga ttgctattgc cgaagtacgc gaagcactca
    11701 ctcgtactct ggcgactgaa ctggcggatg agctgctggc tatttacaac gcgaattacc
    11761 agagcgagta ccgtgttgag catgaagata ttgcgaaacg cactctgcgt aatgcctgcc
    11821 tgcgcttcct tgcttttggt gaaacgcatc tggctgacgt gctggtgagc aagcagttcc
    11881 acgaagcgaa caatatgacc gatgcgctgg cggcgctttc tgcggcggtt gccgcacagc
    11941 tgccatgccg tgatgcgctg atgcaggaat acgacgataa gtggcatcag gacggtctgg
    12001 tgatggataa atggtttatc ctgcaagcca ccagcccggc ggcgaatgtg ctggagacgg
    12061 tgcgcggtct gttgcagcat cgctcattta ccatgagcaa cccgaaccgt attcgttcgt
    12121 tgattggcgc gtttgcgggc agcaatccgg cagcgttcca tgccgaagat gggagcggtt
    12181 accagttcct ggtggaaatg cttaccgacc tcaacagccg taacccgcag gtggcttcac
    12241 gtctgattga accgctgatt cgcctgaaac gttatgatgc caaacgtcag gagaaaatgc
    12301 gcgcggcgct ggaacagttg aaagggctgg aaaatctctc tggcgatctg tacgagaaga
    12361 tcaccaaagc actggcttga taaataaccg aatggcggca atagcgccgc cattcgggga
    12421 atttacccct gttttctcag gcgaatttca gattcaccac gctgcatcac cctttgcaac
    12481 acttccgatt ccagctccgc taatcgcacc gaccctaatc gacgcggacg ggggatatcc
    12541 actgtcaaat ccagaccaat ttttccctct tcaattaata acacccggtc agccattgct
    12601 accgcttcgc tcacatcatg cgtcaccaac agtacggtaa agccgtgctc ctgccaaagt
    12661 gacacaatca aatcctgcat ctcgagtcgc gttaaggcgt ccagtgcccc gagcggttca
    12721 tcaagcaaca ataaacccgg tcgatgaatc aacgctcttg ccagcgccac tcgctgtttc
    12781 tgcccgcctg aaagtgcggc aggccattcc ccggcgcgat tctccagtcc taccgcagcc
    12841 aacgcccgac gcgcggcatc gcgccactgg cctttaaggc ctaacccaac gttatcaatc
    12901 accgatttcc acggtagcag acgcgcatcc tgaaacatca ttcgcgtgtc ttcctgaatt
    12961 tcagccagcg gtgtggtgcc tgccaacgca tcgcctgcgg ttggcgtttc cagcccggcc
    13021 agcaggcgca gcagggtact tttgccacca ccgccacaaa ctgacctgcc ggaatatgta
    13081 aatccagttg gttcaggacg atattttccg cgtaatgttt gcttactgca ttgagcaaca
    13141 atggtgtgcc ctggttcaga cgagcagtat tcataccgtg gcctccttca aatgataagc
    13201 cgggttccag cgcaaccaga ggcgctctaa cagctgcgcg ctgacgtcag caagtttgcc
    13261 gagcagggcg taaagaataa tagcgactac caccacgtcc gtttgcaaaa actctcgcgc
    13321 attcatcgcc agataaccaa tgccggaatt ggcagaaatg gtttcggcaa caatcagcgt
    13381 cagccacatc aggcccaacg caaaacgcac gccgaccata attgagggca gggcaccagg
    13441 caggatcaca tggataaaca gcggtatgcc ggataaccca tagctacgcg ccatctccac
    13501 cagcccgcga tcgatattac ggatgccatg ccaggtgttg atataaatgg gaaacagcgt
    13561 accgagcgcc accagaaaga tttttgcgga ttcatcaatg ccaaaccaca aaatcaccag
    13621 cgggatcagc gccagatgcg gcacgttgcg caacatctga attgaggtat ccagcagccg
    13681 ttctccccag cgagatagcc cgctaatcag tcccaaaatc aaccccagcg atccgccaat
    13741 tgaaaagcca atcagcgccc gctaggaact gatcgccaga tgctgccaca gttcgccgct
    13801 ggcggagagc gtccagaacg ccgtcaccac cccttccggt gagggcaaaa tacgcgtcga
    13861 cagccagcca actgaggagg ccagttgcca caccgccacg atgcccaccg gtaaaaacca
    13921 gggggcaacg cgcaataacc acttcttcac tggcgttgcc attatttctt ccttagcttt
    13981 gcgcgacttt acgggggata aaatcattcg ccaccgcttc gccttgcgga ttcagcggct
    14041 gcggctgggg aatttccgga atggcgacat ccagatgtgg gaacagcaac tcgccgaccc
    14101 gatacgcttc ttccagatgc ggatagcccg aaagcacaaa gctgtcgatg ccaagcgcgg
    14161 cgtattcgtt gattcgcgca gcgaccgtag gaccatcgcc caccagcgcc gttccggcac
    14221 cgccgcgcac taagccaacg cccgcccata aattggggct gatctccaga ttgtcgcgct
    14281 tgccgttatg taacgccgcc attcgctgtt gtcctacgga atccgtccgg gcgaatgcgg
    14341 cctgtgcttt ggcgatagtt tcatcatcaa gatgcgagat taaccgctcg gcggcctgcc
    14401 acgcttcgtc gttagtttca cgaacaatca catgcagacg aataccgaaa cgaattttgc
    14461 gtccatgcgc ggcagctttc gcccgcactt gttcgatctt ctcttttact agttctggcg
    14521 gttcgcccca ggtgaggtag agatcaactt gttctgccgc cagctcctgg gcgacgtctg
    14581 acgatccgcc aaagtaaagc ggaggataag gctgttgaat cggcgggaag agcagttttg
    14641 ctccgcgcac atgaatatgt ttaccgttga aattgacggt ttcccccagc aataagcgcc
    14701 gccagaccta ggtaaattcc gccgaggctt cgtagcgctc gctatgatca aggaacacgc
    14761 cgtcgcctgc cagctcttgt ggatcgctgc ctgtgaccag attaaacaac gcacgaccat
    14821 ttgagagacg gtcaagcgtg gcggcctggc gagcggcaac ggtaggtgag gttacgctgg
    14881 ggcgcagggc gacaagaaac ttcagccgct gcgtcaccgg gatcatcgac gccgccacca
    14941 gccacgcatc ttcacacgat cgccccgttg ggatcagcac accggtatag cccagacgat
    15001 ccgccgcttg cgcaatttgt tgcagataac cgtgatcaac cgggcgtgaa ccttcttccg
    15061 ttcccagata gtgcccgtca ccgtgggtcg gtaaaaacca gaacatattc agactcataa
    15121 ttgttttcct tccagttgag tgggctgcca gatgcgctgg cgaatatcga cttttttcgg
    15181 caccagacga ttttcataaa acagatctgc cgtttgctgc tgtaaggcgg caacctcggc
    15241 gttaaccggt ttgatggtgg taggagggcg atgatctaag taagaggcaa tcaccggtgc
    15301 cggtaagccc atcgtttttg ccagtaaagc gatgctttgc tcgcgctggc tgcgggttaa
    15361 cgcatcggcc tcactaaagg ttgccagtac gccctgaata aaagcgccgt ttttttctgc
    15421 atagggacga gctgccagat aaaacgatcc agtttgattg agatcggtgc cgtctttcag
    15481 cacccgcacg ccgccctgta ataatgcagc agagtagtag ggatcccaga tagcccaggc
    15541 gtcaacgtta ccttgctgga acgcggcacg ggcatcagcg ggcgttaggt aagtgggttg
    15601 gatatcggta aacttaagtc cggcctgacg cagtgcacgc agtaaaaggt tgtgtgaact
    15661 ggaacctttc tgaaaggcaa ctttgtgacc tttaagatcg gctacggttt tgatcgggct
    15721 gttttctgcc accagaatca cttcggcttt gggcttcggt ggctcgacgc tcacatatac
    15781 caaatcagcc ccggcagcct gggcaaagat tggcggaata tccccggtac tgccgagatc
    15841 aatactgcca acgtttaagg cttccaacat ttgcggaccc gcggggaact ccacccagga
    15901 gatttttgat tgcggatagc gtttttccag taactggtgg ctttttgcca gtaccatacc
    15961 aatactgcct ttctgatagc ctatacataa cgcttcaggc gaggattctg cagcaaccgc
    16021 aatcgtagag acgctaagca atcccaccag cgccagttta atgatgttac gcatgggcat
    16081 tacctcgcag agacagaagg tcaggaacct gaacatcgcg gcggtgcaat gcctgccaga
    16141 aagtttctag cgcggtatca agacgggttt gcagatttgg cgtgaactgg ggtctgtgat
    16201 ggtaatcaat tacttgtgag tcatcggcaa acacgccgtg caggatctcc tgagctttca
    16261 gtgcgcttaa aactggttta agggcataat cgaccgccag cagatgggcc acggtaccgc
    16321 ccgtcgccag cggtagcacc actttgcctt gcaaagcgcg ctctggcagc aggtcgagca
    16381 gggttttcag cgcgccggaa taggcggctt tatacacagg tgtagcgact atcagtccat
    16441 cagcctgttg cagctgttcg gtgaaggtct tgagtgccgg actatcgaaa cgagcataaa
    16501 gcagatcttc cggggcgaag ttttgcagat tccagtgata aacctctaca tccagtccat
    16561 ttagtttttc ccgcgcatat tccagcaagg agctggagcg agaaggaaag cgaggactac
    16621 ccgccagggt gatgacacgc atactctctc cttataacca attgttcttt ttttgttaac
    16681 attgataaca attcggtcag tctgtcggag agacaagaaa atgccaaata taaattttgt
    16741 gtatcttttt ctgaaaataa actaaagaaa gggctttata tatcacgcat atttatttgt
    16801 tggatagtca ttagatgttg aatcaatgaa ttactcgttc agttaatatt taaatattca
    16861 tgaaatctat aaattaaaga tttgtcactt attggattta gtatgcttga tttaaatggc
    16921 ggtcaattat tgttattatt aagtctaatg tcatttaaag gcattatcat atttacgaag
    16981 agatcaggat gatgacgatg aaaaaaagtg tattgacggc gtttataact gtggtatgtg
    17041 caacgtccag cgttatggca gctgatgata atgctatcac ggatggcaaa gtaacattta
    17101 atggtaaagt tattgctcca gcttgtaccc tggtagctgc gacgaaagat tcagtagtca
    17161 cattgccaaa tgtcagcgcc accaagttgc aaactaatgg agcagtctct ggcgttaaaa
    17221 ctgatgtacc aattgcctta gaaggctgtg atgttactgt aactaaaaat gcgacgttta
    17281 cctttagtgg tacggctgac ggcgtgcaac ctacagcatt tgccaaccag gctaccaccg
    17341 atgcagcgag aatgttgctc tacaaatgta tctgccagat ggttctacat cggtaactcc
    17401 cggtaccgaa acgtcgaata ttcagttagc ggattctgct gagcaaacag tgacctttaa
    17461 agttgattat atcgctacgg ggaaagcgac ttctggtaat gtgaatgcgg taacaaattt
    17521 ccatattaac tattattaat agaactcatt aattgtttta ttaattagta cccctctagt
    17581 cttctggagg ggatattcat attttttaag agtgactatt tatgaaaact tgcataacaa
    17641 agggaattgt gaccgtaagt ttaacggcaa tattactcag ctgctcatcc gcatgggcgg
    17701 caggtaaagg cgggattgga cttgcagcaa cacgtcttgt ttattcagaa ggtgaagagc
    17761 aaatttcact gggtgtacgt aacaccagtc cggatgttcc ttatcttatt cagtcatggg
    17821 tgatgacccc agataataaa aaatcagcag attttattat tacaccaccg ctatttgtgc
    17881 tgaatccggc taatgagaat ctgttacgca ttatgtacat tggtgcgccg ttggcgaaag
    17941 acagagaaac ccttttcttc actagcgtac gggcagtccc ttcaacaacg aagcgggaag
    18001 cgggaagagg gaaataccct gaagattgcc acacaaagcg tcatcaaact tttctggcga
    18061 ccaaaaggtt tagcgtatcc cttaggcgag gctccggcga aactgcgttg cacttcgtca
    18121 gctgacatgg ttacggtcag taacccaaca ccttatttca ttaccctgac agacctgaaa
    18181 ataggtggaa aagtagttaa aaataaaatg atttccccct ttgataaata ccaattttct
    18241 ctgccaaagg gggccaaaaa tagcagcgta acgtatcgaa ccatcaatga ctacggggcg
    18301 gaaacgccgc aactcaactg taaatcgtaa gccgtcttca gttaagagag cgagatgtat
    18361 agaactcatc gacaacacag cctgttaagc tctggtggag tgccatcgtt tattgggggg
    18421 ctggtggtgt ttgtgtcggc agcgttcaat gcacaagctg aaacctggtt cgatcctgct
    18481 tttttcaaag atgatccctc aatggtggcc gatttgtctc gtttcgaaaa aggacaaaaa
    18541 ataacgccag gggtttatcg tgtcgatatt gttctgaatc agacaattgt agatacgcgc
    18601 aacgtcaatt ttgttgagat aacgccagag aaggggattg ccgcctgttt gacgactgaa
    18661 agcctggatg caatgggtgt taatactgat gcgtttccgg cttttaaaca actggacaaa
    18721 caagcgtgtg tgccattggc ggagattatt ccggatgcca gcgtaacgtt taatgtgaat
    18781 aaactccgtc tggaaatttc agtaccgcaa atcgccatca aaagtaatgc ccgtggttat
    18841 gtcccccctg aacgttggga tgaagggatc aacgcgctat tactgggata ttcgtttagc
    18901 ggggctaaca gtattcatag cagcgcagac agtgattctg gcgacagcta ttttctgaat
    18961 ttaaacagtg gcgttaattt aggcccatgg agattgcgca acaattcaac atggagtcgc
    19021 agtagtggcc aaaccgcaga atggaagaat ctcagcagct atttgcagcg ggcggttatt
    19081 ccactaaaag gcgaactgac cgtaggtgat gattatactg caggcgattt tttcgatagt
    19141 gtcagctttc gtggtgtgca gctggcgtca gatgacaaca tgctgccaga cagcctgaaa
    19201 gggtttgcgc ctgtggtgcg tggtatcgcc aaaagcaatg cccagataac gattaagcaa
    19261 aatggttaca ccatttacca aacttatgta tcgcctggtg cttttgaaat tagtgatctc
    19321 tattccacgt cgtcgagcgg tgatttgtta gttgaaatca aagaagcgga cggcagcgtc
    19381 aatagctaca gcgtaccgtt ttccagcgtg ccattactcc agcgtcaggg gcgaatcaaa
    19441 tacgcggtga cactggcgaa atacagaacc aatagtaatg aacagcagga gagcaaattt
    19501 gcccaggcca cgttgcagtg gggcggaccg tggggaacga catggtatgg tggtggacaa
    19561 tatgctgaat attaccgtgc cgccatgttt ggtctgggat ttaaccttgg cgatttcgga
    19621 gcaatttcgt tcgatgcgac ccaggcgaag agtacgctgg cagaccaaag cgaacataaa
    19681 ggtcagtcat atcgttttct gtatgccaaa acgctcaacc aattgggcac taattttcaa
    19741 ctgatgggct atcgctattc gacgtcgggt ttctacaccc tttccgacac catgtataaa
    19801 catatggatg gctacgaatt taatgacggt gatgatgaag atacgccgat gtggtcgcgt
    19861 tattacaatt tgttttacac caaacgtggc aaactgcagg tcaatatctc ccagcaatta
    19921 ggcgattacg gttcgtttta tttaagtggt agccagcaaa cttactggca taccgatcaa
    19981 caggatcggc tattacagtt tggctacaac acgcaaatta aagatctctc gctgggggtt
    20041 tcctggaact acagtaagtc ccgtggtcaa cctgatgctg atcaggtgtt tgcactaaat
    20101 ttttccctgc cgctcaatct gttgctcccc agaagtaatg atagctatac caggaaaaaa
    20161 aattacgcct ggatgacctc taacaccagt atcgataacg aagggcacat tacacaaaac
    20221 ctgggtttaa cggagacact actcgatgac ggtaacctga gctacagcgt gcaacaggga
    20281 tataacagcg aggggaaaac ggctaatggt agcgccagca tggactacaa aggggcgttt
    20341 gcagatgccc gagtgggcta caactacagc gataacggca gtcaacaaca actgaactac
    20401 gctctttcag gcagtttagt tgcccattca cagggcatta ccctggggca atcgctgggg
    20461 gaaactaacg tgctgattgc agcaccaagc gcagagaata ctcgtgtggc gaacagcacc
    20521 gggctgaaaa ctgactggcg cggatatacc gttgtcccct atgccacttc ttatcgggaa
    20581 aatcgaatcg cacttgatgc ggcatcgtta aaacgtaacg tggatcttga aaatgcagta
    20641 gtcaacgtgg ttcccaccaa aggggcgttg gttctggcgg agttcaatgc ccatgcggga
    20701 gcaagggtat taatgaaaac atcaaagcag ggtataccgc tgcgttttgg cgcgatagcg
    20761 acgctggacg gcatacagac taatagcggc attattgatg atgatggctc gctctatatg
    20821 tccggtttgc ccgctcaggg agcgataact gtacgctggg gcgaagctcc cgatcaaatt
    20881 tgtcatatca gttaccagct taccgaacaa caaattaact ctgcgattac gcgaatggat
    20941 gccatatgca gataatcttt ggagaaaaat gcgtgttatt actacgacta ttttttgccg
    21001 ccgtcttaat gctatggtgc gctcaaactg ctgcttatag cgggcagtgt cataccactc
    21061 aggggaatcc gtatattggc gtcaattttg gcgttaaaac cctggaggaa gaagaaaata
    21121 cggctggagt agttaaagac aaattttatc agtggaacga atcgaatgat tattatgttt
    21181 cctgtgattg cgataaagac aatgtcagaa gtggccgatg ggcattcgcc gcggattcac
    21241 cgttagtcta tttaggcgac aactggtaca aaattaatga ctatcttgcc gccaaagttt
    21301 tattgcaggt taaaggcagt tctcctactg cggttccttt cgaaaacgtg ggcacagggg
    21361 cagatacacg atggcatatt tgcgatcccg gcggtcaacg tttaggtggc cagggggcta
    21421 gcggtaatag cggtagcttt tccctgaaaa tattgcagcc gttcgttggt tcggtcgtca
    21481 ttcctcctat ggcgctggcg cgattatttg aatgctacaa catacccgca ggtgattcct
    21541 gcacgactac aggtacaccg gttttagtgt attacctgtc tggtactatc aattcacttg
    21601 gctcatgttc cgtcaatgcc ggagaaacaa tcgaggtcga tctgggcgac gtatttgcgg
    21661 ctaactttcg tgttgtaggg cataagcctc ttggggccag aacggcagaa cttgcaattc
    21721 cagtcaggtg taacacggga aacgcggggt tagttaacgt caacctgagt ctgacggcaa
    21781 ctacagaccc cagctatccc caggcgatta agacgtcacg tcctggcgtg ggcgtggtgg
    21841 tgaccgatag ccagaacaac attatttccc ctgctggtgg aacattaccg ctctctattc
    21901 ctgatgatgc agacagtatc gcgcgaatga atgtctatcc agtcagcacg acaggtgtac
    21961 caccagaaac cgggcgattt gaagccacgg caacggtgag aataaatttt gattaacgcg
    22021 tgaacgtatg aagaaaaaaa cgatatttca gtgcgttatc ttgttcttta gcattcttaa
    22081 catccatgtc gggatggctg ggcctgaaca agttagtatg catatttatg ggaatgtggt
    22141 cgatcagggc tgtgatgtcg ccaccaaaag tgcattacaa aatattcata ttggtgattt
    22201 taatatcagt gattttcagg ctgcgaatac cgtaagcact gctgctgatt tgaatatcga
    22261 tatcaccggt tgtgccgctg gtattactgg cgcggacgtc ctttttagcg gcgaggctga
    22321 cacccttgcg ccgacactgc tcaaactaac tgacacaggc ggaagcggtg gtatggcaac
    22381 ggggattgcc gtgcaaattc ttgatgcgca aagtcagcaa gaaatcccgc tcaatcaggt
    22441 ccagcctctt acgcccttaa aagccgggga taacacactc aaatatcaac ttcgttataa
    22501 gtccacaaag gcgggagcaa cgggcggtaa tgcgacggcg gttctctatt ttgatctggt
    22561 ttaccagtga aggagtgatg ttgaaacgga taatctggat tctgttctta ctgggattaa
    22621 cggggggctg tgagctattt gcccatgatg gcacggtcaa cattagcgga tcgtttcgcc
    22681 gtaatacatg cgtgctggca caggatagca agcaaatcaa tgtgcagtta ggcgatgtct
    22741 cgctgacacg tttttttcat gggaattatg gcccggagaa atctttcatc attaatttgc
    22801 aggattgcgg aacagatgtc agcacggttg acgtcacctt ttcaggaacc cccgacggag
    22861 tgcagagcga aatgctgtcc attgaaagtg gtacggatgc agccagtggg ctggcaattg
    22921 cgattctgga tgatgcgaag atattgattc cgcttaacca ggcgagtaaa gactacagcc
    22981 tacatagcgg taaggtgcca ttaacttttt atgcgcaatt gcgacctgtc aatagcgatg
    23041 tgcagtcggg taaagtgaat gccagcgcga catttgtact tcattatgac taatacgtgg
    23101 aacagattgg cgctcttgat tttcgccgtt ttatcgctgc tggtggcggg tgaattgcgg
    23161 gcaggagtgg tggtcggcgg aacgcgattt atctttccgg cagacagaga atcgatatct
    23221 attttactga ctaataccag tcaggaatcc tggctgatta acagtaaaat caaccgccca
    23281 acgcgttggg ccggggggga cgcgtcgaca gtgccagcac cattactggc cgctccgcca
    23341 cttattctcc tgaagcccgg tactacaggc acgttgcgct tgctgagaac ggaaagcgac
    23401 atcttgcctg tggatcgcga aacgctattt gagttaagca ttgccagcgt gccatccggc
    23461 aaagttgaaa atcagagcgt aaaagtggcg atgcgctcgg tatttaaact gttctggcga
    23521 cccgaaggtt tgccgggcga cccgctggaa gcttatcaac aattacgctg gacacggaat
    23581 tcgcagggtg tacaactcac taacccaacg ccttactaca ttaacctgat tcaggtgagc
    23641 gtaaatggta aagcgttaag taatgcggga gttgtgccgc ctaaaagcca gcgtcagaca
    23701 agctggtgtc aggcaatcgc accgtgtcat gtcgcctggc gggcgataaa tgattacgac
    23761 gggttgagtg caaagaagga gcaaaatctg ccctgaaaca ggttcggaaa acgtttgcgt
    23821 tttttttgcc gcaggtcaat tcccttttgg tccgaactcg cacataatac gcccccggtt
    23881 tgcacaccgg gaatccagga gagttcatgt actacccctt cgttcgtaaa gcccttttcc
    23941 agctcgatcc agagcgcgct catgagttta cttttcagca attacgccgt attacaggaa
    24001 cgccgtttga agcactggtg cggcagaaag tgcctgcgaa acctgttaac tgcatgggcc
    24061 tgacgtttaa aaatccgctt ggtctggcag ccggtcttga taaagacggg gagtgcattg
    24121 acgcgttagg cgcgatggga tttggatcga tcgagatcgg taccgtcacg ccacgtccac
    24181 agccaggtaa tgacaagccg cgtctctttc gtctggtaga tgccgaaggt ttgatcaacc
    24241 gtatgggctt taataatctt ggcgttgata acctcgtaga gaacgtaaaa aaggcccatt
    24301 atgacggcgt cctgggtatt aacatcggca aaaataaaga tacgccagtg gagcagggca
    24361 aagatgacta tctgatttgt atggaaaaaa tctatgccta tgcgggatat atcgccatca
    24421 atatttcatc gccgaatacc ccaggattac gcacgctgca atatggtgaa gcgctggatg
    24481 atctcttaac cgcgattaaa aataagcaaa atgatttgca agcgatgcac cataaatatg
    24541 tgccgatcgc agtgaagatc gcgccggatc tttctgaaga agaattgatc caggttgccg
    24601 atagtttagt tcgccataat attgatggcg ttattgcaac caataccaca ctcgatcgtt
    24661 ctcttgttca gggaatgaaa aattgcgatc aaaccggtgg cttaagtggt cgtccgcttc
    24721 agttaaaaag caccgaaatt attcgccgct tgtcactgga attaaacggt cgcttaccga
    24781 tcatcggtgt tggcggcatc gactcggtta tcgctgcgcg tgaaaagatt gctgcgggtg
    24841 cctcactggt gcaaatttat tctggtttta tttttaaagg tccgccgctg attaaagaaa
    24901 tcgttaccca tatctaatta tttcttcgaa ttcctcttta taagataatc agggctttat
    24961 tttcagccct ggttgtttta tattcatcgc tgttgcttat ttagacattt tgtactttta
    25021 ttgttgaggt tattaagcga agcgacaatg gattgtgttg ctgcggtttt atagggtagg
    25081 ggagaggcag atgcgaatta aaccagacga taactggcgt tggtattacg atgaagagca
    25141 cgatcgaatg atgctcgatt tagccaatgg tatgctgttt cgctcacgtt ttgcgcgcaa
    25201 gatgttgact ccagatgcct tttctcccgc aggcttttgc gttgacgacg ccgcgctcta
    25261 tttctctttt gaagaaaagt gccgcgattt taatttatct aaagaacaaa aagccgaact
    25321 ggtgctgaat gcactggtag caattcgcta tctcaaaccg caaatgccga aaagctggca
    25381 ttttgtttcc catggtgaaa tgtgggtgcc catgccgggc gatgcggcct gcgtttggtt
    25441 gagcgatact cacgagcagg tcaatttgct ggtcgttgaa tctggcgaaa atgccgcact
    25501 atgcctgctg gcacaaccct gcgttgttat tgcgggtcgc gcgatgcagt tgggcgacgc
    25561 cattaaaatc atgaacgaca ggctgaaacc gcaggttaat gttgacagct tcagcctcga
    25621 acaggcagtc taacgcgcca acttaagtgc agtcttcggt acacagctac agcaaagaat
    25681 ggtgccatca tcgcccattg ctgatttttt cagcggcgag acttcgcctt ctaaaatctg
    25741 aacacggcaa cttccacaaa tgcccgcgcg gcaagaataa gggatacgaa ttccctgatt
    25801 ttctaattgc tccagcaaca cctgttggtt atttccacga aatgcctgtc cctgccagtc
    25861 aatatctaca tttgcgtccg gttgttgcgt gatgttggcg gtatcatcag cggcagctgc
    25921 gccgtaaatt tttgccggag ccgttgccag aatttccacc tcatcgccaa cgcgaatcac
    25981 gccgctatta cgggcaatta aattctgacc aaaatcgaca tcgccgttat cctgggcagt
    26041 gcggaaagat tgcaatgttt ttaatggttc gcctgccgga tgtttttgcc ctttttctgg
    26101 gctgacggtg gtgaaaatac agcggctaca aggtttaacc acatcaaaca ccacatcacc
    26161 aatgcgaatc actttccagc gatcttcttc ccaggctgac gcgccggaaa ccaccagatt
    26221 ggggcggaat tgctccattt ttacactggc cggacaacgt tgttggagat cacgtaacga
    26281 ggcttcgtta gcaagaaggt aaggatagcc atcagcaaat gacagaggta cagtgttgtg
    26341 gcgtttcacg cgccgggtca tttgtggccc cacccagcgt aattgcactt cgcgggagaa
    26401 aaatccactt agccatttgt tgatcgcgtc tggcgcaatt cgcgcggtaa aatgtgtgcc
    26461 ccaaacttcg gttggtgcgt cttgtgtggc gaaatcagca aaacgaacat atgcgctact
    26521 gccatctggt gcggtgagat gcaagccatc atgcacaggt gaaggagtaa accgtaccat
    26581 ctggggaaac tggcgagcgg taataaacgt accgtcaggt tccgtgatca taaagatgcg
    26641 atcgaaggcc agaccactga catcagccag agcatgtgta agaccaatgc cgcgcatcga
    26701 tttaacagga tgaataaaaa gccgggttaa tgtcgccacg gtgcggtcct caaatgaaaa
    26761 taagccctca actttatgac atgacgtgct tattagctat aatgcgcaac aattttctta
    26821 gcgcctgtcc cattaggcta ttttatttgt cagtttggcc ctgggttgtg ctcgaaatcc
    26881 tcacgtactt gtgtacgctc cggtttctcc gcgctgtcca tgtccagact gactgcaaca
    26941 attacgccta ctgcggtagg ctcttagagt aaaagtgacg atatgaattc tctgtttgcc
    27001 agtacggccc gtgggctgga agagctgtta aaaactgaac tggaaaacct gggggccgtt
    27061 gaatgccagg tggttcaggg tggggtccat ttcaagggcg acacacggct tgtttaccag
    27121 agcctgatgt ggagccgcct ggcctcgcgt attatgttgc cgctgggcga gtgtaaggtt
    27181 tacagcgatt tagacctcta tctcggtgtt caggcgatca actggacaga gatgtttaat
    27241 cctggcgcga ccttcgctgt ccacttcagt ggtttgaatg acaccatccg caacagtcag
    27301 tacggcgcga tgaaagtgaa agacgcgatc gtcgatgctt tcacgcggaa aaatctgccg
    27361 cgtccaaatg ttgatcgcga tgcgccggat atccgcgtta acgtctggct gcataaagaa
    27421 accgccagta tcgctcttga tctgagtggt gatggtttac atctgcgtgg ctatcgcgat
    27481 cgtgctggta ttgcgccgat caaagaaacc ctggcagccg ctattgtgat gcgatccggc
    27541 tggcagcctg gaacaccgct gctcgatccg atgtgtggtt ccggtacgtt gctgattgaa
    27601 gcggcgatgc tggcgaccga tcgcgcaccc ggcttgcacc gtgggcgttg gggctttagc
    27661 ggctgggcgc agcatgatga agctatctgg caggaagtga aagcggaagc gcaaactcgc
    27721 gcccgtaaag gcctggctga gtatagctct catttttacg gttcggacag cgacgcacgg
    27781 gtgattcaac gtgcacgcac taacgcccgt cttgcgggga ttgctgaact gatcaccttt
    27841 gaggtgaaag atgtcgcgca actgaccaat ccgctgctga aagggccgta cggcacagtg
    27901 ttgagcaacc cgccatacgg ggaacgtctg gacagcgaac cggcgctgat tgcgctgcat
    27961 agcctgctgg gtcggatcat gaaaaaccag tttggtggct ggaatctctc tttgtttagt
    28021 gcctcgccgg atctgctaag ctgcttgcag ctgcgtgcag acaaacagta caaggcgaaa
    28081 aacggcccgc tggactgcgt acagaaaaat taccacgttg ccgaaagcac tccagacagc
    28141 aaaccggcga tggtagcgga agactacgcc aaccgcctgc gtaagaacct caaaaaattc
    28201 gagaagtggg ctcgccagga aggaattgaa tgttaccgcc tgtatgacgc cgatctgccg
    28261 gaatataacg ttgccgttga ccgttattcc gactgggtgg tggtgcagga gtatgcaccg
    28321 ccaaaaacta ttgatgctca caaagcgcgt cagcgtctgt tcgatattat cgctgcaacc
    28381 atttcggtac tggggattgc gccaaacaaa ctggtgctga aaacccgtga acgccagaag
    28441 ggcaaaaacc agtaccagaa actgggcgag aagggcgagt ttcttgaagt taccgaatat
    28501 aacgctcact tgtgggtgaa cctgacggat tatctcgata ctggtctgtt cctcgatcac
    28561 cgtatcaccc gccgtatgct cggtcagatg agcaaaggca aagatttcct caacctgttc
    28621 tcttataccg gtagcgccac cgtgcatgcg ggattaggcg gcgcgcgcag caccaccacc
    28681 gtggatatgt cgcgtactta tctggagtgg gcagaacgca acctgcgtct gaatggccta
    28741 accgggcgtg cgcatcgcct gattcaggcc gattgcctgg cgtggctgcg tgaggcaaat
    28801 gaacagtttg atctgatctt tatcgatccg ccaaccttct ctaactcaaa acgaatggaa
    28861 gatgcgtttg atgttcagcg cgatcatctg gcgctgatga aagatttgaa acgtctgctg
    28921 cgtgcaggtg ggacgatcat gttctcgaac aacaaacgtg gcttccgtat ggatctcgac
    28981 ggcctggcaa aactgggact gaaagcacaa gaaattacgc aaaaaacgct ctcccaggat
    29041 ttcgcccgta accgccagat ccacaactgc tggctgatta ccgcagcctg aaaggaatag
    29101 taatgtcatt aatcagtatg catggcgcat ggctgtcgtt cagcgacgcg ccgcttctcg
    29161 ataacgcaga actgcatatc gaagataacg aacgtgtttg tctggtgggc cgcaacggcg
    29221 cgggcaaatc gacgttaatg aaaatcctca accgtgaaca agggctggat gacggtcgca
    29281 ttatttacga gcaagatttg attgtagctc gtctgcaaca ggatccgccg cgtaacgttg
    29341 agggtagcgt ttatgatttc gttgccgaag gcattgaaga acaagcggaa tatctgaaac
    29401 gctatcacga tatttcgcgc ctggtgatga acgacccgag cgagaaaaat ctcaacgaac
    29461 tggcgaaggt tcaggaacag ttggatcacc acaacctgtg gcagctggaa aaccgcatca
    29521 acgaagtgct ggcgcaactg gggttagatc ctaatgttgc gctgtcgtcg ctttccggcg
    29581 gctggttgcg taaagcggca ttaggacgcg cgctggtgag taatccgcgc gtgctgttgc
    29641 ttgatgaacc gacaaaccac ctggatattg aaaccatcga ctggctggaa gggttcctta
    29701 aaaccttcaa tgggacgatt attttcatct cccacgaccg ttcgtttatc cgcaatatgg
    29761 cgacgcgcat tgttgatctc gatcgcggca agctggtgac ctatccaggg aattacgacc
    29821 agtacctgct tgaaaaagaa gaagccctgc gcgtggaaga actacaaaat gccgagttcg
    29881 atcgcaaact ggcgcaggaa gaggtgtgga tccgccaggg gatcaaagca cgccgtaccc
    29941 gtaatgaagg ccgcgtacgc gccctgaaag caatgcgtcg cgagcgtggt gaacgtcgcg
    30001 aagtgatggg taccgcaaag atgcaggtgg aagaggccag ccgctccggt aagatcgttt
    30061 tcgaaatgga agacgtttgc taccaggttg acggtaagca actggtgaaa gatttttcgg
    30121 cccaggttct acgtggcgac aaaattgtcc tgattggtcc gaatgggtgc ggcaaaacca
    30181 cgctgctgaa actgatgctc ggtcagcttc aagcggacag cgggcgtatt cacgttggca
    30241 ccaaactgga agtggcttat ttcgatcagc accgcgcgga actggatccc gataaaacgg
    30301 tgatggataa cattgccgaa ggtaagcaag aggtgatggt taacggcaag ccacgccacg
    30361 tattgggcta tttgcaggac tttctgttcc atccgaaacg ggcgatgacg ccggtacgtg
    30421 cgctttctgg cggtgagcgg aaccgcttgc tgctggcgcg tttgttcctc aaaccaagca
    30481 acttattgat tcttgacgaa ccgaccaacg atcttgatgt cgaaacgctg gaactgctgg
    30541 aagaactgat cgacagctat cagggcacgg tattgctggt tagccacgat cgtcagtttg
    30601 tcgataacac cgttacagaa tgttggatct tcgaaggcgg cggtaaaatt ggtcgttatg
    30661 tcggcggtta tcatgatgcc cgtggtcagc aagagcagta tgtggcgctc aaacagcctg
    30721 cggtgaaaaa aaccgaagaa gccgccgcgg caaaagcaga aactgtaaaa cgcagcagta
    30781 gcaaactaag ctataaattg cagcgcgaac tggagcagct accgcaattg ctcgaagatc
    30841 tggaggcgaa gctggaagcc ctacagacgc aggtggcgga tgcttccttc ttcagtcagc
    30901 cacatgagca gacacaaaaa gtgctcgccg atatggctgc tgcagagcag gagctggagc
    30961 aagcctttga acgctgggag tatcttgaag cgttaaaaaa tggtggctga tcgcaaaata
    31021 gtcgatttaa acagagacag ctgacaacgg taaaattgcc tgatgaactg ggtttatcag
    31081 gcatgaaaac caactctttg ttagtcatct gtaaaatagc gcatcattaa ggagtaccaa
    31141 tgtgcgaaca tcatcatgcc gcgaagcaca tcctgtgctc gcagtgtgac atgctggtgg
    31201 cgttaccgcg ccttgagcat ggtcagaaag cggcatgtcc ccggtgtggc acaacgttaa
    31261 ccgtggcgtg ggatgcccct cggcagcgtc cgaccgccta tgcgttggct gcactgttca
    31321 tgctgttgct gtccaacttg tttccttttg tgaatatgaa cgttgcagga gttaccagtg
    31381 aaattacatt actggaaatt cccggcgtgc ttttttctga ggactacgcc agcctcggca
    31441 cctttttcct gttgtttgtg caactggttc cctcgttttg tctgataacc attctgttac
    31501 tggtgaatcg cgcggaatta ccggtccgtt taaaagagca actggcacgg gtgctttttc
    31561 aactcaaaac ctggggaatg gcggagattt tcctcgcggg tgtgctggtc agtttcgtta
    31621 aactgatggc ttacggcagc attggggtag gcagcagctt tctcccctgg tgtttatttt
    31681 gtgtcctgca actgcgcgct tttcagtgcg ttgatcgtcg ctggttatgg gacgacatcg
    31741 ccccgatgcc agaactgcgc cagccgctaa aaccaggcgt cacggggata cgtcaggggc
    31801 tgcgttcgtg ctcctgttgt acggcaatcc ttcctgctga tgaacccgtg tgcccgcgtt
    31861 gtagtaccaa agggtacgtt cggcgtagaa acagcctgca gtggacactc gcgctgcttg
    31921 taacgtccat catgctgtat cttccggcta atattttgcc catcatggtg acggatttat
    31981 taggctcgaa gatgccgtcg acgattctcg ctggggtcat tctgttatgg agcgaaggct
    32041 cttatcccgt cgctgcggtg atctttctgg ccagtattat ggtgccaacg ttaaagatga
    32101 tcgccatcgc gtggctgtgt tgggatgcca aagggcatgg caagcgcgac agtgaaagaa
    32161 tgcatttgat ttatgaagtt gttgagtttg taggccgctg gtcgatgatt gacgttttcg
    32221 ttatcgcggt gctctcggcg ctggtgcgta tgggaggttt aatgagtatt tatccggcaa
    32281 tgggtgcatt aatgtttgct ttagtcgtca taatgacaat gttttctgct atgacgtttg
    32341 acccgcgttt gtcgtgggat cgtcaacctg aatcagagca tgaggagtcc tgacagtatg
    32401 gaatctaata atggggaagc caaaatccag aaagtgaaga actggtctcc cgtgtggata
    32461 tttcctatcg tcacggcgct cattggggcc tgggttctat tttatcatta cagccatcag
    32521 ggaccggaag tgaccctgat caccgcgaat gcggaaggaa ttgaaggtgg caaaaccacc
    32581 attaaaagcc gtagcgttga cgtcggcgtg gttgaaagcg ccacactggc tgatgatttg
    32641 acgcacgttg aaatcaaagc gcggctgaat tccggtatgg aaaaattgct gcataaagac
    32701 accgtctttt gggtggtgaa accgcagatt ggtcgcgaag ggattagcgg cctgggaacg
    32761 ctgctgtctg gagtttatat cgaactgcag ccaggcgcga aaggcagcaa aatggataaa
    32821 tacgatttgc tggactcgcc accgttggcc ccgcctgatg cgaaaggtat ccgtgtgatt
    32881 ctcgatagca aaaaagccgg gcagctctcg ccaggagatc cggtgctgtt ccgtggctat
    32941 cgggtaggtt cggttgaaac cagcaccttc gatacgcaaa aacgcaatat cagttatcaa
    33001 ctgttcatca atgcacctta tgaccgactg gtgaccagca atgttcgctt ctggaaagat
    33061 agtggcattg cggttgatct gacgtcagcg gggatgcgtg tggagatggg ctcattgaca
    33121 acgctgctta gtggcggtgt tagctttgat gtgccggaag gtctggattt agggcagcca
    33181 gtggcaccga aaacagcttt cgttttgtat gatgatcaga agagcattca ggattcgttg
    33241 tacaccgatc acattgatta tctgatgttc tttaaagatt cggtacgcgg tctgcaaccg
    33301 ggagctccgg tagaattccg gggtattcgc ctgggtaccg taagcaaagt gccattcttt
    33361 gcgccgaata tgcgtcagac atttaacgat gattaccgta ttccggtact gattcgtatc
    33421 gagccagagc ggctgaaaat gcagcttggc gaaaatacgg atgttgttga gcaccttggc
    33481 gaattgttga aacgtggttt acgcggatcg ctgaaaaccg gaaacctggt cactggtgca
    33541 ctgtatgttg atctcgattt ctatccaaat acgcctgcaa taaccggtat tcgtgaattt
    33601 aatggttatc agattatccc gactgttagc ggcggcctgg cgcaaatcca gcaacgactg
    33661 atggaagcgt tggataagat caacaaactg ccattgaatc cgatgattga acaggcaacc
    33721 agtacgtttt ctgaaagtca gcgcacaatg aaaaacctgc aaacgacgct ggatagcatg
    33781 aacaagatcc tcgctagcca gtcgatgcag cagttgccga cggatatgca gtcaacgttg
    33841 cgtgaattga atcgcagcat gcagggcttc cagcctggct ccgcagccta caacaagatg
    33901 gtggcggata tgcagcgcct tgatcaggtg ttgcgagaac tgcaaccggt gctgaaaacg
    33961 ctcaatgaga agagtaacgc gctggtattt gaagcgaagg acaaaaaaga tccagagccg
    34021 aagagggcga aacaatgaaa aagtggctag tgacgattgc agcactgtgg ctggccggat
    34081 gcagctccgg cgaaattaat aaaaactatt accagttacc tgtggtgcag agcggtacac
    34141 aaagtaccgc cagccagggc aatcgtctgt tatgggtaga gcaggtcact gttcctgact
    34201 atctggcggg gaatggtgtg gtttatcaaa ccagtgatgt gaagtatgtg attgccaaca
    34261 acaacttgtg ggccagcccg ttggatcaac agttgcgcaa caccctggtt gccaacctga
    34321 gtacgcaact gcccggctgg gtggttgcct cccagcctct gggaagcgtc caggacacgc
    34381 tcaatgttac cgtaacggag tttaacggtc gctatgatgg caaggtcatt gtcagtggtg
    34441 agtggctgtt gaaccaccag ggacaactga tcaaacgtcc gttccgtctg gaaggagtgc
    34501 aaactcagga tggttacgat gagatggtta aagtgctggc cggtgtctgg agtcaggaag
    34561 ccgcttctat tgcacaagag ataaagcgtc taccttaatt ataaagattt gtaagtataa
    34621 ccgtctccgg tatgttgcct gaggcggttt ttttgtttct aacgtgcgga aaaatttgtt
    34681 cctcttcaca ttt
//
LOCUS       DAJVUN010000022        34091 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.022, whole genome shotgun sequence.
ACCESSION   DAJVUN010000022 DAJVUN010000000
VERSION     DAJVUN010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34091
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.022"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..460)
                     /locus_tag="OQQ76_000833"
     CDS             complement(<1..460)
                     /locus_tag="OQQ76_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1967420.1"
                     /translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYI"
     gene            1076..1213
                     /locus_tag="OQQ76_000834"
     CDS             1076..1213
                     /locus_tag="OQQ76_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001102512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967421.1"
                     /translation="MNVQAIFILMVVQLFGKEIAVTIEELQVVLVPHRLLSQLVKFRS
                     A"
     gene            1813..2592
                     /gene="ipaJ"
                     /locus_tag="OQQ76_000835"
     CDS             1813..2592
                     /gene="ipaJ"
                     /locus_tag="OQQ76_000835"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     protease IpaJ"
                     /protein_id="HCS1967422.1"
                     /translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
                     NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
                     CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
                     FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
                     PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
     gene            complement(3538..4467)
                     /gene="virB"
                     /locus_tag="OQQ76_000836"
     CDS             complement(3538..4467)
                     /gene="virB"
                     /locus_tag="OQQ76_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence regulon transcriptional activator
                     VirB"
                     /protein_id="HCS1967423.1"
                     /translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
                     VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
                     ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
                     SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
                     EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
                     RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
     gene            complement(4684..4920)
                     /locus_tag="OQQ76_000837"
     CDS             complement(4684..4920)
                     /locus_tag="OQQ76_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCS1967424.1"
                     /translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
                     ISFEFNLRIDESALEHIITIGDLISVVKNSTKSI"
     gene            complement(4924..6825)
                     /gene="ipaA"
                     /locus_tag="OQQ76_000838"
     CDS             complement(4924..6825)
                     /gene="ipaA"
                     /locus_tag="OQQ76_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector invasin IpaA"
                     /protein_id="HCS1967425.1"
                     /translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
                     ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
                     HQNGLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
                     LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
                     DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
                     PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
                     PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHTPDN
                     SDGIGSDLLTTSSQERSTNNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
                     SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
                     LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANTINYVTETNADTIDKNHAI
                     YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
                     KVLKNINKD"
     gene            complement(6834..7832)
                     /gene="ipaD"
                     /locus_tag="OQQ76_000839"
     CDS             complement(6834..7832)
                     /gene="ipaD"
                     /locus_tag="OQQ76_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle tip complex
                     protein IpaD"
                     /protein_id="HCS1967426.1"
                     /translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
                     TMLNDTLHNIRTTNQALKKDLSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSKK
                     EYPINKDARELLHSAPKEAELDGYEMISHRELWDKIAKSINNINEQYLKVYEHAVSSY
                     TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVKSLKDELTKLKEKYKDKPLYPANNTV
                     SKEQANKWLTELGGTIGEVSEKNGGYVVNINMTPIDNMLKSLDNLGGNGEVVLDNAKY
                     QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
     gene            complement(7883..8974)
                     /gene="ipaC"
                     /locus_tag="OQQ76_000840"
     CDS             complement(7883..8974)
                     /gene="ipaC"
                     /locus_tag="OQQ76_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS translocon subunit IpaC"
                     /protein_id="HCS1967427.1"
                     /translation="MEIQNTKSASILYTDISTKQTQSSSETQKSQNYQQLAAHIPLNV
                     GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTITPENTLDISSL
                     SSNAVSLIISVAVLLSALRTAETRLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
                     AVTQVGITGIGAKKTHSGISEQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
                     QTNSSTKILGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRAYELNTLSAQQKQ
                     NIGRATMETSAVAGNISTSGGRYTSALEEEEQLISQASSKQAEEASQVSKEASQATNQ
                     LIQKLLNIIDNINQSRNSTASQIAGNIRA"
     gene            complement(8994..10736)
                     /gene="ipaB"
                     /locus_tag="OQQ76_000841"
     CDS             complement(8994..10736)
                     /gene="ipaB"
                     /locus_tag="OQQ76_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocon subunit
                     IpaB"
                     /protein_id="HCS1967428.1"
                     /translation="MHNVSTTTTGLPLAKILASTELGDNTIQAANDAANKLFSLTIAD
                     LTANKNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
                     TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
                     IQTRLSELDPDSPENKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
                     KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
                     SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
                     ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
                     SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
                     KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGN
                     VASAVFQNNASKNLADLTLSKYQVEQLSKYIGDAIEKFGQLQEVIAELLASMSNSQAN
                     RTDVAKAILQQTTA"
     gene            complement(10742..11209)
                     /gene="ipgC"
                     /locus_tag="OQQ76_000842"
     CDS             complement(10742..11209)
                     /gene="ipgC"
                     /locus_tag="OQQ76_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SycD/LcrH family type III secretion system
                     chaperone IpgC"
                     /protein_id="HCS1967429.1"
                     /translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
                     DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
                     DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
     gene            complement(11267..11893)
                     /gene="ipgB1"
                     /locus_tag="OQQ76_000843"
     CDS             complement(11267..11893)
                     /gene="ipgB1"
                     /locus_tag="OQQ76_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB1"
                     /protein_id="HCS1967430.1"
                     /translation="MQILNKILPQVEFAIPRPSFDSLSHNKLVKKILSVFNLKQRFPQ
                     KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTSYVSSMINRSIDEMAIHNGV
                     VLTSDNKKNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
                     LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
     gene            complement(11909..12298)
                     /gene="ipgA"
                     /locus_tag="OQQ76_000844"
     CDS             complement(11909..12298)
                     /gene="ipgA"
                     /locus_tag="OQQ76_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgA"
                     /protein_id="HCS1967431.1"
                     /translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
                     FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
                     PDELIESLYEFLFCIKLTIANITSEVN"
     gene            complement(12311..13795)
                     /gene="icsB"
                     /locus_tag="OQQ76_000845"
     CDS             complement(12311..13795)
                     /gene="icsB"
                     /locus_tag="OQQ76_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector IcsB"
                     /protein_id="HCS1967432.1"
                     /translation="MILKISNFIDASNTKGPIRVEDTEHGPILVAQKFNLKDLFFRTL
                     STINAKINSQILNEQLKNYRLANQKSLLLFLKTLASEKSAESAFAAYEAVKNSIQHSF
                     TGKDIKLMLNTAESFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
                     TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
                     NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISYNLFGLDE
                     TNMSKFICQKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
                     NNVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
                     TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMSRVLNELKTGATDKKEE
                     IIEKSIKTIDYYNSLKSPDLGTKLYIHDLLQVNKLLLNNSHSNI"
     gene            14109..15725
                     /locus_tag="OQQ76_000846"
     CDS             14109..15725
                     /locus_tag="OQQ76_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector inositol
                     phosphate phosphatase"
                     /protein_id="HCS1967433.1"
                     /translation="MHITNLGLHQVSFQSGDSYKGAEETGNQKGVSVISYQRVKNGER
                     NKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEAIKLAGGDTSKIKAMMEQLDTYK
                     LGEVDKRNINELNKVISEEIGAQLGIKNKKELQSEIKQIFTNYLNNKNWEPINKNINY
                     HGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESEHIANMWLSKVVDDEGKE
                     IFSGIRHGVISAYGLKKNSSERAVAARNKAEELASAALYSRQELLSQALSGKTVDLKI
                     VSTSLLTPTSLTGGEESMLKDQVKALKGLNSKRGEPTKLLIRNSDGLLQEVKVNLKVV
                     TFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
                     DVIYLANQIKEIVNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQD
                     AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
                     LPLSSLELSYAERIGDPKIWNMVKGYSSFV"
     gene            15735..16097
                     /gene="ipgE"
                     /locus_tag="OQQ76_000847"
     CDS             15735..16097
                     /gene="ipgE"
                     /locus_tag="OQQ76_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgE"
                     /protein_id="HCS1967434.1"
                     /translation="MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLL
                     CPFCALPENINDLIYALSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYY
                     ISRVRWLKDEFARRMKGY"
     gene            16097..16555
                     /gene="ipgF"
                     /locus_tag="OQQ76_000848"
     CDS             16097..16555
                     /gene="ipgF"
                     /locus_tag="OQQ76_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system lytic transglycosylase
                     IpgF"
                     /protein_id="HCS1967435.1"
                     /translation="MSRFVFIFLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
                     FNKFAVNVNNNGSKDYGIMQINDFHSKRLREMGYTEEMLISHPCLSVHYAAKLLNEFM
                     LMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI"
     gene            16564..17679
                     /gene="mxiG"
                     /locus_tag="OQQ76_000849"
     CDS             16564..17679
                     /gene="mxiG"
                     /locus_tag="OQQ76_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiG"
                     /protein_id="HCS1967436.1"
                     /translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
                     EFGNDNLPENIIPVTDSKSDGIIYLAISKDNICQFSDEKGEQIDINSQFNSFEYDGVS
                     FQLKNMMEDKSRVHILNGMYNKPSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
                     RYGIVNTGQCNYILAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQRFP
                     YINLYVLNLVSDKAELLVFLSKERNSSKDTELEKLKNALIVEFPYIKNIKFNYLSDHN
                     AREDAKGIFTKVNVQYKEICETNKVTYSVREELTDEKLELINRLISDYKNVYGDQYIE
                     FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
     gene            17687..17938
                     /locus_tag="OQQ76_000850"
     CDS             17687..17938
                     /locus_tag="OQQ76_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscF/YscF/HrpA family type III secretion system
                     needle major subunit"
                     /protein_id="HCS1967437.1"
                     /translation="MSVTVPNKDWTLSSLSETFDDGTQTLQRQLTSALDALAENPSNP
                     QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
     gene            17951..18244
                     /gene="mxiI"
                     /locus_tag="OQQ76_000851"
     CDS             17951..18244
                     /gene="mxiI"
                     /locus_tag="OQQ76_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner rod protein
                     MxiI"
                     /protein_id="HCS1967438.1"
                     /translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
                     VSQIMEMVSNPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
     gene            18250..18975
                     /gene="mxiJ"
                     /locus_tag="OQQ76_000852"
     CDS             18250..18975
                     /gene="mxiJ"
                     /locus_tag="OQQ76_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctJ family type III secretion inner membrane
                     ring lipoprotein Mxi"
                     /protein_id="HCS1967439.1"
                     /translation="MIRYKGFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
                     ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
                     KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
                     LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKSEFLTNEVIYVFLG
                     MAVLVVILLVWAFKTGWFKRNKI"
     gene            18972..19499
                     /locus_tag="OQQ76_000853"
     CDS             18972..19499
                     /locus_tag="OQQ76_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion apparatus protein OrgA/MxiK"
                     /protein_id="HCS1967440.1"
                     /translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
                     NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
                     ISKQGEAAIRSGFWHLIAWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
                     QYAKRHFTGIQTSCL"
     gene            19441..20136
                     /gene="mxiN"
                     /locus_tag="OQQ76_000854"
     CDS             19441..20136
                     /gene="mxiN"
                     /locus_tag="OQQ76_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa type III secretion system linker protein
                     MxiN"
                     /protein_id="HCS1967441.1"
                     /translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
                     KAICVIKDATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
                     TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
                     KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHEKLRQ
                     IAEDLLKENPVND"
     gene            20129..20536
                     /gene="mxiM"
                     /locus_tag="OQQ76_000855"
     CDS             20129..20536
                     /gene="mxiM"
                     /locus_tag="OQQ76_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiM"
                     /protein_id="HCS1967442.1"
                     /translation="MINQINASNALQQRLNSEEFVNLNERLSSSQSFDEDIIYEIMQY
                     FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
                     SIYNNIDFYIKTTTFDSLISVFEAGREADDSTW"
     gene            20520..20948
                     /gene="mxiM"
                     /locus_tag="OQQ76_000856"
     CDS             20520..20948
                     /gene="mxiM"
                     /locus_tag="OQQ76_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system pilotin MxiM"
                     /protein_id="HCS1967443.1"
                     /translation="MIRHGSNKLRIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
                     YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
                     AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
     gene            21078..21710
                     /gene="mxiE"
                     /locus_tag="OQQ76_000857"
     CDS             21078..21710
                     /gene="mxiE"
                     /locus_tag="OQQ76_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system transcriptional
                     activator MxiE"
                     /protein_id="HCS1967444.1"
                     /translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
                     EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLV
                     LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVF
                     LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
     gene            21697..23397
                     /gene="mxiD"
                     /locus_tag="OQQ76_000858"
     CDS             21697..23397
                     /gene="mxiD"
                     /locus_tag="OQQ76_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system secretin MxiD"
                     /protein_id="HCS1967445.1"
                     /translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
                     VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKMTLLVGLIWYKDGNAL
                     YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
                     LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
                     NNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
                     VKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
                     SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
                     LVGERNSSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
                     EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN
                     IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
                     "
     gene            23416..24483
                     /gene="mxiC"
                     /locus_tag="OQQ76_000859"
     CDS             23416..24483
                     /gene="mxiC"
                     /locus_tag="OQQ76_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system gatekeeper subunit
                     MxiC"
                     /protein_id="HCS1967446.1"
                     /translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
                     IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
                     LDQDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVESLTKIINEIISGSEKSVNAG
                     INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
                     EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
                     QLLLTLLYIFQYPSESEQILTSVIDVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
                     EIAINILRELVTSAYKKELSR"
     gene            24496..26556
                     /gene="mxiA"
                     /locus_tag="OQQ76_000860"
                     /gene_synonym="virH"
     CDS             24496..26556
                     /gene="mxiA"
                     /locus_tag="OQQ76_000860"
                     /gene_synonym="virH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein MxiA"
                     /protein_id="HCS1967447.1"
                     /translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
                     IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
                     GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
                     HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
                     NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
                     GTFDIDNSNDSSLAMIENLDAISSETVPLILLFAENKISANDMEGLIERIRSQFFIDY
                     GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
                     SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
                     QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
                     LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
                     VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
                     LKTI"
     gene            26569..26970
                     /gene="spa15"
                     /locus_tag="OQQ76_000861"
                     /gene_synonym="spaK"
     CDS             26569..26970
                     /gene="spa15"
                     /locus_tag="OQQ76_000861"
                     /gene_synonym="spaK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone Spa15/SpaK"
                     /protein_id="HCS1967448.1"
                     /translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
                     IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
                     VIKDDYVHDGIVFAEILHEFYQRMEILNEVL"
     gene            26974..28266
                     /gene="spaL"
                     /locus_tag="OQQ76_000862"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
     CDS             26974..28266
                     /gene="spaL"
                     /locus_tag="OQQ76_000862"
                     /gene_synonym="mxiB"
                     /gene_synonym="spa47"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system ATPase SpaL"
                     /protein_id="HCS1967449.1"
                     /translation="MSYIKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
                     IIARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
                     TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFAS
                     AGCGKTFLMNMLIEHSSADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
                     SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
                     SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
                     QKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIEELRTIIDFGEYKPGENA
                     SQDKIYNKISVVESFLKQDYRLGFTYEQTMELIGETIR"
     gene            28359..28697
                     /gene="spa13"
                     /locus_tag="OQQ76_000863"
                     /gene_synonym="spaM"
     CDS             28359..28697
                     /gene="spa13"
                     /locus_tag="OQQ76_000863"
                     /gene_synonym="spaM"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858283.1"
                     /note="Not similar to SpaM from Salmonella T3SS; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein Spa13"
                     /protein_id="HCS1967450.1"
                     /translation="MEALDKRIIYFLQLENDLEPIGAQSVSQLFNTRRKIAIVKKHII
                     QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
                     SQEDMKYGIR"
     gene            28684..29562
                     /gene="spa32"
                     /locus_tag="OQQ76_000864"
     CDS             28684..29562
                     /gene="spa32"
                     /locus_tag="OQQ76_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle length
                     regulator Spa32"
                     /protein_id="HCS1967451.1"
                     /translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
                     SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
                     DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
                     LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
                     MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
                     NKNNSTGYNEQSEEEC"
     gene            29556..30437
                     /gene="spa33"
                     /locus_tag="OQQ76_000865"
                     /gene_synonym="spaO"
     CDS             29556..30437
                     /gene="spa33"
                     /locus_tag="OQQ76_000865"
                     /gene_synonym="spaO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000944309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SctQ family type III secretion system ring
                     protein Spa33"
                     /protein_id="HCS1967452.1"
                     /translation="MLRIKHFDANEKLQILYAKQLCERFSIQTFKNEFTGSESLVTLI
                     SLCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSSVFSIPELSDKITF
                     RITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDLLHHLLEFCLGSSNVRLA
                     TLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSESNGESDHTEVSLAL
                     FNYDDINVKVDFILLEKKMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELV
                     SIEDGYGIEISSWMVKE"
     gene            30442..31092
                     /gene="spa24"
                     /locus_tag="OQQ76_000866"
                     /gene_synonym="spaP"
     CDS             30442..31092
                     /gene="spa24"
                     /locus_tag="OQQ76_000866"
                     /gene_synonym="spaP"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa24/SpaP"
                     /protein_id="HCS1967453.1"
                     /translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
                     QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQY
                     LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
                     FIVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINVPA"
     gene            31107..31367
                     /gene="spaQ"
                     /locus_tag="OQQ76_000867"
     CDS             31107..31367
                     /gene="spaQ"
                     /locus_tag="OQQ76_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaQ"
                     /protein_id="HCS1967454.1"
                     /translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQE
                     QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
     gene            31367..32137
                     /gene="spa29"
                     /locus_tag="OQQ76_000868"
                     /gene_synonym="spaR"
     CDS             31367..32137
                     /gene="spa29"
                     /locus_tag="OQQ76_000868"
                     /gene_synonym="spaR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858288.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein Spa29/SpaR"
                     /protein_id="HCS1967455.1"
                     /translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
                     IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
                     IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
                     FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
                     IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
     gene            32144..33172
                     /gene="spa40"
                     /locus_tag="OQQ76_000869"
                     /gene_synonym="spaS"
     CDS             32144..33172
                     /gene="spa40"
                     /locus_tag="OQQ76_000869"
                     /gene_synonym="spaS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     switch protein Spa40/SpaS"
                     /protein_id="HCS1967456.1"
                     /translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
                     FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
                     VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
                     SQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKRE
                     YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
                     ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
                     LEQVENTH"
     gene            33185..33427
                     /locus_tag="OQQ76_000870"
     CDS             33185..33427
                     /locus_tag="OQQ76_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967457.1"
                     /translation="MCYMGVNFCNKIGIDQSEFEIESSIINSIANEVLNPISFLSNKD
                     IINVLLRKISSECDLVRKDIYRCALELVVEKTPDDL"
BASE COUNT        10612 a         5008 c         6846 g        11625 t
ORIGIN      
        1 cgatgtacaa cattcgactg tatccgggaa cagcaacgaa cacgtgaagc ggtgagcgac
       61 cattacgcat agtgccccag tcaacctgca tctgtcgtcc gggttcagtt tcgaaccgaa
      121 cggcaggctc ctgctcctga ggaaccgaga gagaacgaat gaatgccctg agaatggtca
      181 ttccgccacg atatccctgg tctctgatct cgcgagcgat taccgttgcc gggattttgt
      241 aaggatgagc atcggcgatg cgttgacgaa tataatcccg gtattcatcc aggagtgaag
      301 caacagcagg tcgcggcgta tattttggcg gctcagattt tgcctgcaaa taacgtttaa
      361 cggtattgcg ggagagcccc agttctctgg caatcgcccg gctactcatt ccctgcttgt
      421 gcaggatttt aatttccata actgtctcaa aagtgaccat aagctctcct gaatcaggag
      481 agcagattac cccctggatc tgatttcagg cgttgggtgt ggatcactat tgcaccgttc
      541 gtgacacttg ttgactgcct gtgcggcatc tggtatcaag gtggcgtgaa gccggttcag
      601 gttctcatgc ggaacgttgg aacctatatc cccccgatac caaaggcgaa atgtaagtga
      661 caaaatgcaa tgaacacgtt ctccgttaac tgaggagcat ggtgataaat aaaggtaaat
      721 gcagaaggtg tagagtctcg cagatttctg acatcataga gcctaacatt agatgcataa
      781 cgctacagat tgtagaatct ctacaggtga aatatacact ggttggcgtt tatgtcgcaa
      841 aacatgtcat tcaggttcat ctcaccaata aggatatgag tgaagtggag gataagtgag
      901 tctgctgtca gagttttctg gtgtatgtca gtaactgcga accatgtctg cttgatatgg
      961 gagcttatgg aggccctctg tacaaggtta gggagctaac aaagcaggga taaaaagtcc
     1021 gcctgatgca ggcacggttc gttaaatctt ttgccattgg taacaaaatg gtgcgatgaa
     1081 tgttcaggct atctttatct tgatggtggt tcagctgttt ggtaaagaaa tcgctgtaac
     1141 aatagaagaa ctgcaggtag tactggtccc acatcgtttg ctcagtcaac tggtgaagtt
     1201 ccgtagcgcg taaattaatg ctttgcatga aacgttactg gagtggatga aagaatacct
     1261 gcatatatca ttactgcgtt ggattaccag tacaacagat tgaatgaact ggacatgttg
     1321 atagacggca ttgaaaagca gcttataagc atagtgcggc agagttaatt ggagagcact
     1381 tcgccttctg agtattaagt aagcatggtg gtacctgcgg atactatcta ttcactgtgc
     1441 tcggtcggca gccttactga ccaaggagtt gggggagttg ataacaaagt tgaaaaaaca
     1501 gctctcaacc aaggtggtta ttgtaacaat agcaaataag ctggtgtgac ctgtatcaca
     1561 ataaccgatt atggacgtaa atacgacaaa aatatgtcag tatcaggcgg tattaattgc
     1621 tgatgctgat ggacattaac tcttaataaa agggtggatg ctgaaaggtt gttatggtga
     1681 cggacgtgat gacgacggaa aagagtatga ggttttggat ttaaagttcg ttcggggaat
     1741 aaggacccgg tcagctaatt ctcatagtag ttcgcattgc tggatgcaat actgtgctgc
     1801 aattactcgt cgatgtcgga acaacggaag ccttgcaaac ggggatgtat tcatacaggt
     1861 gttatgttat atggggtttt attgcagggg gctataccaa gagaatatat gatatctcat
     1921 cagactgatg tgagggtaaa tgagaataga gtaaacgaac aaggttgttt tttggcgagg
     1981 aagcagatgt atgacaattc ttgtggagct gccagtttac tctgtgccgc aaaggaatta
     2041 ggggttgata aaataccaca atacaaaggg tctatgtccg aaatgacaag gaagagttct
     2101 cttgatttgg ataatcgttg tgagcgggat ttatacttaa taactagtgg taattataat
     2161 ccgagaatac acaaagataa tatcgcggat gccggttatt ctatgcctga taagatagtc
     2221 atggctacga ggcttcttgg attgaatgct tatgtcgttg aagaaagtaa cattttttcg
     2281 caagtaatta gttttattta tcccgatgca agggacttat taattggcat gggatgtaat
     2341 atagtacatc aacgagatgt gttatcttct aaccaaagag ttttggaagc tgttgctgta
     2401 tcctttattg gagttcctgt cggcctccac tgggtgttgt gtagacctga tggaagctat
     2461 atggatccag ctgtaggaga aaattattct tgtttttcaa ctatggaatt aggtgcaaga
     2521 agaagtaatt ctaactttat aggatatact aaaataggta tttccatagt tataactaat
     2581 gaggctttgt aaattgtcgt tttttatctg tgaaggagct tgaatatttt ggggcggggg
     2641 gcataacaaa tgatattact gagtacaaat ttagctatat tgggcggatt agttgtgtgg
     2701 gaagacgaaa tgtttctctt gaaataagtg aactccctca aggaatgatt gagtgcttaa
     2761 atatttaagt gctggtaagt ttgagaaggc tggcatattt tgcagagcaa acagtgattg
     2821 acttggatga tatttttatt ttagtcactc gttgtaattg gagtatgctt tattttattt
     2881 gaaaatagat gtattttata cccgcaattt aaactgtaag ccctatgagg ggtatggata
     2941 ttataagtta ctctttgact aagcataact tttgggggta gaaaaataaa tctcttgtta
     3001 ataattaata tgattttaaa atcaaacttg tttataatta taaaataatg taagtcggtc
     3061 attttatggg aagattagga gaataaaaca gtaattatat ttgagaaatc tgctaatata
     3121 ttcttaaagc ttttttgata ctgtgaacga agtctgttaa tggtgaattt tttgtttatc
     3181 accatgtaaa aaaattgagt agtaaaagcg ttgactgcta atcctcgctg tttttattga
     3241 aacgattaaa aatacgctga atattttcgg ccagtcactc atcttcacat aaaattttga
     3301 ccatcatgcc gcatccctta gttgcacaat tcattttcaa tgatatgaat attactaatt
     3361 tcaccagata atgttctcgt ggtcagcagg gtatgagttt tcaccgtaat tttaaggaaa
     3421 cacagtgcgt ggggattgaa taacagatag ccgacggaat taccccaccg gctgaaagtc
     3481 aagttcaacg aagattttta ttatctgaat tgggcagttt acatcagtgt tcgatgttta
     3541 tgaagacgat agatggcgag aaattatatc ccgaatagct tcatctattt ctctctgaac
     3601 tgttttgttt attttagata atgtaaatat tagagttctg tttgttttat tctcttttct
     3661 ttttatgtaa gtccgtttgt ctttagaaat aaataacgag tcaactttta gcgaagggtt
     3721 ttgctttctg tttttgcttt tctttatgat gtttaaaatt tcttttttat atatgtccgg
     3781 gggcaaattt gtatcaaggt cttttatttc ttcctttaat attggtagtg tagaactaag
     3841 agattcatta gccttttcaa gtcctttata ataattgaat aatatcttgt agtcattaaa
     3901 gttaagttct gacgcgattg gaaatagaga tattatttcc tgaggaacgc ttgctgcctg
     3961 aaaggcacga gtgactttcg cgcgagacag attctctttt ttggctatgt ctttatagga
     4021 catccctgat actttcagaa aattaagacc aataccaagt tctcggatgc tatgctcttt
     4081 tgctgtttgt atatcgtttg ctagttttct ggcatcaaga gtagatatat attcttttga
     4141 atatagaact tcaagatctg ctcctgcata tattgcagat gctcttctac gagtgccatc
     4201 cagaatttca attctaccat caatctccct tcctattaca gggaagaatt gttgtagctt
     4261 tatagttttt atgatatcgg ctaatgattc ttctgttagg gattcttgat cgcgtacatt
     4321 cgttttttgg ttgacgaagg ttaaatcttg gatcctttta tgaggaatct tagctttgat
     4381 aaaggaaact ttattaccag aatggagtgt aaactctttc ttttggcctt cctttatact
     4441 taacaagtcg ttgcacaaat ccaccatatc acaccctgtt tattcatatt gatttatatt
     4501 gacaaaagtt aaatgcagtg tgagcaagat tgtatgtaac tgttgatgat agtcaacggt
     4561 agtcttaaaa attactattt taatagctgg attgatgcaa tttatcttta ttggataaaa
     4621 gaataatatt cttgtggagc tctgatgtga gagctccata gatgaaaaaa tgcttatcaa
     4681 ttactatatt gattttgtac tatttttgac tacagaaata agatctccaa tagtaataat
     4741 gtgttctaat gcagattcat ctatacgtag attgaactca aaactaatca tatccagcat
     4801 ttcaatcaga gaaagagaat cggcagaaag atcttcaata aatttagttt cttcagatag
     4861 tttgctgtac gctataccat agcaaaaggc cactattgat aatatttttt cttttatcat
     4921 attttaatcc ttattgatat tctttaatac ttttgatagg gaagtggtta catcttttgc
     4981 tgctttatat atattattgt tttcagctgt aatatcattg ttatttttta aatcagatat
     5041 atcatctgta agtaattctg cagaggtatc gtcaattttt gacaatacct tgctgagggc
     5101 gctagatact tcttttgcct tttcatagat cgcatgattt ttatcaattg tatctgcgtt
     5161 ggtttctgtt acgtagttta ttgtatttgc atctgtaact tttaatttgt tgtttattct
     5221 gtgttctgtt gtggattttg taatgtcctt tgatttttcc tgtaactctc gttcttgtgt
     5281 tcctgattta gttccaatga gagatataag attacttagg gagtttgtta ctttttttga
     5341 agcttcaaat atcgtttccc gtgttaaata tgtgtctcca tttcttgata aaaaatcagt
     5401 ctgaagtact tttgaatcag tgtttgagtt gaatttattg atttgcgaag ctactctatg
     5461 agaaagagaa gcgctacttt tagttgtatc tgatgagtta tcattactgc ttgtcactcc
     5521 ttccgggtgg agaggggggg tggttgaaga gttctgtatg ttcagaggcc tgtgtccccg
     5581 agaaagagag ttatttgtag atctttcttg actactcgta gttaacaggt ctgaacctat
     5641 tccatccgaa ttatctggag tatggttgaa aaccttttct aaagctgaat tatttgcaaa
     5701 tgtctggaca gtatctgata tagagtgtgg tagaacggaa gttacttttt gaactagtgc
     5761 tctttgtgga tttagtaatg agtttccgtt acgggataat agatcgtttg tctgagaagt
     5821 aggagactgt gcatcatttt ctgggttctc gtgatagcta ttgtcatata ctctgttgtc
     5881 aaaaactcta ttatcgtaag ttctattatc attatttata tgatagtgaa ttacaggttg
     5941 ggatgttttc tcattggctc cgggggttgg tccgccatct ggcatatctt cgggaggtgt
     6001 agggaggcca tcttggatag gatgcgaatc ttttatatct tctaaaatat cattaaggac
     6061 ttttctcaac agctcaggaa acacggctac tgtatttaag tctcttgaca gtttacctat
     6121 accaaatcct ttactatcaa tagtattttt acgttgattg cgcaaactat caaaggcaag
     6181 ttttgcctgt gcgtcaacta aatcatctag tttgagagat gaaacagttt cattacttaa
     6241 ctttaattca gcaagaatat tattcttgat aaatgatgat acttcagtat tgaggagttt
     6301 ttgtcccaat gataaagctt caccagatgt gtgttgttgt gctaatagtg caagtctgtg
     6361 ctcaatgttt tgtcgtaatt gatggagttt cttattcttt gccgaccatg gtccaaaggc
     6421 agaatcttgg gataatttat cttttataat tagttccgaa tactgtgcga caattttttg
     6481 aagtcccttt tcgttttcaa aattaagacc attttgatgt actaaggagt acaaaacatt
     6541 tgaaaattcg agaatctcgc ttttggcata cgcattcatt gagttggaat aaatgcttct
     6601 taacacatct tctttccctg aggaagaaaa taaaaaatca agacatttct gattaaaaga
     6661 cgttgcaaag ttttcttttt cagacactga tgctggtgtt tttagagaag tttgcgaact
     6721 atggatatcg gatattttgc tttttaactc gctgtattct gttgatgatg gtgaagttgc
     6781 cttatataag aatgttggcg cttgagtatt atttacatta tgcatggcgc acctcagaaa
     6841 tggagaaaaa gtttatctgt atctgtacat gagcttattg tactactcaa aacctttact
     6901 aaattatcaa aaatactatt ggcattactg tatttttgaa ctaaagtttg aagattattt
     6961 ttcattgttt catcttcggc agagaatccg gcattccatg cctgatattt tgcattatct
     7021 agcacaacct cgccatttcc acctagatta tctaagcttt ttaacatatt gtctattggg
     7081 gtcatgttta tattgacaac atatcccccg tttttttcag atacctcgcc gattgttcca
     7141 cctaattctg taagccattt atttgcttgt tccttactaa cagtattatt tgctggatat
     7201 agcggtttat ctttatattt ttccttgagc tttgtcaatt cgtctttaag cgatttgact
     7261 tgtaatttca cggagtttcc gtcgttacct ccgggagaga tccagccggc aagactggaa
     7321 agaacagcgc taaaatcttg atacatttga gtatatgaac taacggcatg ttcatatact
     7381 ttcagatact gttcattaat attattgatt gactttgcaa ttttatccca cagttctctg
     7441 tgagatatca tttcatatcc atcaagctcg gcttctttcg gggctgaatg taataattct
     7501 cttgcgtctt tattaattgg atattctttc ttggaaagaa tatccaatag ttgagcggat
     7561 ttgtttacat ccatgctaat ctgagatgaa tgtaatgcta tttcttctag cgatgtttta
     7621 gtcaacgttt tttgtgagag atctttcttt aatgcctgat ttgttgttct gatattatga
     7681 agggtgtcgt tgagcatagt aagggaactt acaggatgag aactggtcgt tgtttttata
     7741 tcagaattaa ctgtttcggt tgatgaaccg ttggtattgt ttgggctgaa tgatgaggtg
     7801 gaaatactat tagtcagagt tgttatattc atggttattt ccttatagga agagccatat
     7861 attattatgg ctcttggata tattaagctc gaatgttacc agcaatctga ctggctgtag
     7921 aattccttga ttggttgatg ttgtcaatta tattcaataa tttttgtatt aattgatttg
     7981 tcgcttggga tgcttcttta gatacttggg atgcttcctc tgcttgttta ctgctggcct
     8041 gactgattag ttgttcttct tcttcaagag cagatgtata acgccctcct gatgtggata
     8101 tattaccagc aacggctgat gtctccattg ttgcacggcc aatgttttgt ttttgctgag
     8161 cagaaagggt attgagctcg taagctcttc tctgggtgtc aattttatcc tgcaaagaaa
     8221 tatcgggaga actaagagaa gttttatgtt cagttgacag ggatatatta tctggtgcca
     8281 gtttattttt acctaaaatt tttgtgctag agttagtttg tggtgaggtg atatttgtat
     8341 ctatttgttt atttaaccct aatttagaac ctgcaagctc tttttcaaga gattgagcag
     8401 tggcaaggtt ctttcttaag gctccttttt gttcgctaat ccctgaatgc gtttttttgg
     8461 caccgatacc cgttatacct acttgtgtga ccgctccagt aatgcttgat gatagggctg
     8521 ctaggccttg ccgaacaatg ttctctgcag ctgattttgt agcatcgaac gcaatcaatg
     8581 acaattgaga gcccaatcta gtttctgcag tgcggagagc agaaagtaga acggctacac
     8641 taataattaa agaaacagca ttagaagaaa gactggaaat atccagggtg ttctctggag
     8701 taattgtgtg actcatttct gaaagatctt tcatcttttt gtcagtaagg cgagcaatga
     8761 tttctgaatc atgctgaacc tgctctgata acttcaaaag ttgatcatca tttaatgtag
     8821 ttgttaatac gggattttta ccgacattaa gtggaatatg tgctgctaac tgctgataat
     8881 tttgtgattt ttgtgtttcg gaagaacttt gagtttgttt tgtggatata tctgtatata
     8941 aaatcgaggc tgattttgtg ttttgaattt ccataacatt ctccttattt gtatcaagca
     9001 gtagtttgtt gcaaaattgc ttttgcaaca tcagttctat tagcctgaga gttggacatt
     9061 gaggctaaca gctctgcaat tacttcctgc aattggccga atttttctat tgcgtcaccg
     9121 atgtattttg acagttgttc aacttgatat ttcgataatg tcaggtctgc tagatttttc
     9181 gacgcgttgt tttggaaaac agcagaagcg acatttcctc ccgcttgtgt ggcagagtta
     9241 acactttctc ctaataaaac tgcttggttt aaatgggtgg aaataatttg tttggatatt
     9301 acttcatcac ccgctgcacc aagaaattta tttaatctgg caacagcatt agtgattaaa
     9361 tcgtccagtt gagaagaaaa attcttgaga aactttggta taaggtctgt gagggtttta
     9421 cctattattt tgccaatatt ctctgcaagt tttgctgctg cctgtttacc aacagtggct
     9481 acgagaacga ctgctgcaac caagacaaga gcgcctgcga ttgcccccag aatagagcca
     9541 atcattttgg cttttttcga gtcgacgccc aagccttcga gcatttttgt aaatgcatct
     9601 gaaaggagtt tgattaaggg ttcaatgact gctttcatga tcggattcag ggcttgttcc
     9661 atgaaggaat tgccggtcgc tgcttgtact atagcatccg taaccataag agctaaacca
     9721 acagctgcca gtgctagaga tgctcctcca gaaaaagctg ctgcaacaac actaacgata
     9781 gttaaaagtg ccccaagtat tttcccaaca caacccatta ctctgttgag ttcttctgct
     9841 ttacgtactt cagcagcata ctcatcagat tttctctcca tttcagtttt tcttgattct
     9901 tggagagact ggaatagagc cagatcattt tttaaagatt cttcattatt ttttccaact
     9961 agttgaataa aggttgccat caattgagta acactggcaa gtccggttaa tgatttctgc
    10021 tgggttgata gctgttcagc agatgctgtg tttgaaaatg cagaaaaaga gtctatttct
    10081 ttttcgagtt gcattgattt atctgtaagt ttgctatgaa ttgacagggt tttctgctca
    10141 atcaatgtcc tgtctttaac tgctgcgtct tttttgatag tgagttgtat ttcttcccgt
    10201 cttaattttt tattttctgg tgaatctggg tcgagttcgg ataatcttgt ttgaatttgg
    10261 ttaattttat tttctaggtc ttttatttta gaatctgcgt tttttagttt attaatttgt
    10321 ttttcatagt ctctggttag tccttcagtt tcagatagaa gagtattaat tttatcggag
    10381 aattctaggt ttttttgctg tcttgcctgt tgctgggact tccaggcagt aattttattt
    10441 gttaatgcag ttaaagattt ttcaccgagt atttgaataa ggtttccaat taaaagcgtt
    10501 agttgggaac ttgcatttaa tgactttggt gctttaagtt cagggattaa tatattcgaa
    10561 gttgagtgtg cattagttgt attaatattt ttgttagcag taagatcagc aattgtaaga
    10621 gaaaataatt tgttagctgc atcatttgca gcctggatag tattgtctcc aagctcagtg
    10681 gaagccaata ttttggcaag aggcaaacca gtggttgtgg tgcttacatt atgcataata
    10741 attactcctt gatatcctga attgcgtcta agtatgattg tgcttttatt tttaattttt
    10801 catcattgct gtgttgaatt acgagttcga agcactcttt ggctttcaag ggggctttca
    10861 accgaagctg gcattgtcca gtatggaata ccggtgtata gtcatttttt cctaatgcaa
    10921 aagcgacagc ataaaggtct gctgcttgtt ggaactgttc ttttatctga taaatagctg
    10981 cgagtcccat aatgtagtct acattgtaaa agtcgtatat acataaaaat ctgaagaaaa
    11041 cttcagcttc ctctattctt cctttgttgt aaaagtcata agcatatgaa taaatgtcat
    11101 ccatcatatc atcaggaatt gcattaatat ctttcagtgt agcgccagag ttaattgcat
    11161 caattactgc agtagagatg ctttcatttt cagtgatatt taaagacata aggtctcctt
    11221 tttgtctgca ttactttaat aagtataaaa tttaatataa acagatttaa tttgtattgc
    11281 tttgacggta tacagccttt agaacctctg cgcttatttc tatttgtaaa acttttgttg
    11341 attcattaaa tattttatcg tagacggaac tggatactag atttgtaaga tccttcattt
    11401 gtgtgttaaa caaatccatg tcactgctat aacgttttaa aatctttgct ctgaggccag
    11461 atgaggcaat ctcgtttagt gctgtatgac tgatagatgt ttgtgctgat ttttcatcaa
    11521 gttttatatc cgggaatttt ttttcaatag ctgcaaatat gttttttttg ttatctgagg
    11581 tcaaaacaac tccattgtgt atggccattt catctatact tctgtttatc attgaagaga
    11641 cataagaggt tcgctcttgg ctcatccaac aaaatagttg attccccgaa ttactatctt
    11701 ttattttgtc tatgacgctg tccctgattt tatttatatt caccgggcat ccaaaattct
    11761 tctgaggaaa gcgttgtttt aagttaaaaa cagataatat tttctttaca agcttattgt
    11821 gacttaacga gtcaaatgat gggcgaggaa tcgcgaattc aacctgtgga agtattttgt
    11881 ttagaatttg catgataccc cctatatgtt agttcacttc tgaagtgatg tttgcaatgg
    11941 ttagtttaat acaaaataaa aattcgtaca aagattcaat gagttcatca ggtgaaagat
    12001 attttttgta gtgtttcttg gtcaaaacac attgatgagt atcagggaga agacagatag
    12061 aagaaccata atctctactc aaagagtagt taaggatgag tatgtgttct ggattaataa
    12121 tattttctgt aaaaagttca tgttcattaa gaagtccggt caaaaagatg tattcatcat
    12181 tatctgttat acaaacaggt atttgttctt cgagcaatat aaaggcttga tttttatcgt
    12241 taaaatcaag ctttgcacct gttatttcat aaagtttatc atatagtttg cgacacattt
    12301 ctatggcctt ctatatatta gaatgagagt tattcaataa aagcttattg acctgtaata
    12361 agtcgtgaat gtaaagtttg gttccaagat ctggcgattt aagagaattg taataatcaa
    12421 tagtttttat tgacttttcg ataatttctt cttttttatc tgttgctccg gtttttaatt
    12481 cgtttaatac acgagacata ttgctgggtg ctgattttac taagtatgag tggcaagcgt
    12541 tgatgaccgc atcaaagtct tctgaagata cattttcagt aggatgtttg taaagtgaaa
    12601 ttgataaagg cttgaatgtt tttggggtgt ggataaggtt aattttattg aaacttttaa
    12661 gatagctacg tcgtaattga gtcaatctgg aaagatcaaa atcagattca atatacttca
    12721 ttatctcgtt ataagactga ttgagacttt caatgcgttg cctaacttta tttgcatacg
    12781 cgtatacatt gttaggtgta gcaaccaatt taacgtcagg gagtggaaag tatatttcag
    12841 aatttcctgc tttaagaaca ttaagtgcca taccagcaca gttttcagat ttactgatta
    12901 atttataatt tgccaattgt ctgaaagcat ctgctttctt ttggcatata aattttgaca
    12961 tgtttgtttc atcaaggcca aaaaggttat agctgatttt accatccttt gttttattat
    13021 cacctgataa tggaatgtat actttatcag cactgacccc ccaataacca taggggtctt
    13081 ttttttgatt agctctggga aaaaatattt ttttgttgtt attttgatct tgttttgaat
    13141 ttaataagtt tctaacctct tggcctgcat caagtctttc ggctgtttgg tctgaaatca
    13201 tatttagttt gtcttgttta taggtatcga cactgtaacc tgagcgtttt tcaaaaaggt
    13261 agtttatttc tgtatctttt gtaacattcc cgccgggata ccagctgaga taggtatgag
    13321 ttggttcctg tagtaaattg ttttttatac tgatactggt atgccctaaa tgggttatgc
    13381 ctctatttcc ccagcaacga aacactaaat gtctttcaag atttttggct gtaccgatgc
    13441 catgaaaact ctctgcggta ttcaacatta atttgatgtc tttacctgta aaagaatgtt
    13501 gaattgaatt tttgactgct tcataggcgg caaacgcact ttctgcagat ttttcgctag
    13561 ctaatgtctt gaggaaaagc aataaggatt tttgattcgc tagtcgataa ttttttagtt
    13621 gttcatttaa tatctgtgaa tttatctttg cattaatagt gcttaatgtt ctgaaaaaga
    13681 gatcctttag gttgaatttc tgtgctacca atataggtcc atgctctgta tcttcaacgc
    13741 gtataggccc ttttgtattg cttgcgtcaa tgaaattgct aattttgaga atcatacttt
    13801 attaactctc cattacgtgg tgattgtggg gatgtaaaat gtatttgata tataatatat
    13861 tcaattaata aatttagaaa cttgagcctg ttaacataat caaattttct tttgctgtat
    13921 ataatatgta cctcgtgagc atatgtagtg ctggtttcat catgaaatcc cacaagttaa
    13981 agtgtctgat atatcaggct cggagtgtta tagaaaaaga gagaaccctg ttgaataagt
    14041 atcttttttg ttgtaaaacg aggtacaaaa ctgcaatcaa tgccccattt atgactgagg
    14101 ataattaaat gcacataact aatttgggat tgcatcaggt ttcatttcaa agcggagatt
    14161 cctataaagg cgcagaagaa accggaaacc aaaaaggtgt aagcgtgatt tcatatcaaa
    14221 gagttaaaaa tggagagaga aataaggggg tcgaagcgct taatcgatta tatttacaga
    14281 accaaacaag cttaacaggg aaaggccttt tgtttgcgcg tgacagagct gcagtttttt
    14341 acgaggcaat aaagttggca ggtggtgata cgtcaaaaat taaagccatg atggaacaat
    14401 tagataccta taaacttggt gaagttgata aaagaaatat taatgagctt aataaagtaa
    14461 taagtgaaga gataggagca cagctaggca ttaaaaataa aaaggaattg caatcggaaa
    14521 taaaacaaat atttactaat tatttaaata ataagaattg ggaaccgatc aacaaaaata
    14581 ttaattatca tgggaaaaat tatggttttc aattaacacc cgcctctcat atgaagatag
    14641 ggaataaaaa tatatttgtc aaagagtata atggaaaagg aatttgttgt gcttctacga
    14701 gagagagtga gcatattgcg aatatgtggc tttcaaaagt ggtggatgac gaggggaagg
    14761 aaattttttc gggtatcaga catggagtta tatcagccta tggattgaaa aaaaactcat
    14821 ctgaaagagc tgttgcagct cgtaataaag ctgaggagtt agcaagcgca gcattatata
    14881 gcagacaaga attattatca caggctttgt ctggtaaaac agtagattta aagattgttt
    14941 cgacttctct tctgacgccg accagtttaa ctgggggaga ggagagtatg ttaaaagatc
    15001 aggtaaaggc attaaaaggg ttaaactcta aaagggggga accaacgaaa ttattaattc
    15061 ggaatagtga tggtcttctg caagaagtaa aggttaatct aaaagtggtg acatttaact
    15121 ttggtgtaaa tgaattagcg ctaaaaatgg gcttaggctg gaggaatgtt gacaagctta
    15181 atggtgaatc aatatgttct ttgttggggg ataatttcct caaaaatggt gtgattggag
    15241 gttgggctgc agaagctata gaaaaaaatc caccatgtaa gaatgatgtg atatatctgg
    15301 ctaaccagat aaaagagatt gtaaacaaga agttacaaaa aaatgataat ggagagccgt
    15361 ataaattgtc acaaagaatg gctctattgg cttatactat aggtgctgta ccttgctgga
    15421 attgtaagag tgggaaggac agaacaggta tgcaggatgc tgaaattaaa agagaaataa
    15481 taagaaaaca tgaaacaggg cagttttctc aattaaatag taaattatcc tcagaagaga
    15541 aaagattatt ttctactatt ctaatgaata gtggtaatat ggaaatccaa gagatgaata
    15601 ctggtgtgcc tggaaataaa gttatgaaaa aattaccgct atcttcgtta gagctgtctt
    15661 atgctgaaag aataggggac cccaaaatat ggaatatggt gaaagggtat tcgtcatttg
    15721 tataagagga atatatggaa gatttagcag atgttatttg ccgagccttg ggtatccctt
    15781 caattgatac cgatgatcaa gcaatcatgc ttgatgatga tgtgttaata tatattgaaa
    15841 aagaaggaga ttcaataaat ttattatgcc ctttttgtgc attgcctgaa aatataaatg
    15901 atcttatata tgcgttgagc ctaaattact cagaaaagat atgtttagct actgatgatg
    15961 aaggtggaag tctaattgcg cgattagatc ttaccgggat aaatgaattc gaggatatat
    16021 atgttaatac agaatattat atttcgcgtg tgcgttggct gaaggatgaa tttgcgcgaa
    16081 gaatgaaggg gtattaatgt cccgtttcgt atttattttt ctgtgtttta tcccatattt
    16141 agggagagct gattgttggg ataaggctgg tgaaaggtac aacattccat cgagtttgtt
    16201 aaaagcgatt gcggaaaaag aatccggatt taataaattt gcagtcaatg ttaataacaa
    16261 tggaagtaaa gattatggta taatgcaaat aaatgacttt cattctaaaa gacttagaga
    16321 aatgggatat actgaggaaa tgctaattag tcatccatgt ctttctgtac attatgcagc
    16381 aaagttatta aatgagttta tgctgatgta tggaagaggg tgggaggctg ttggtgccta
    16441 taatgcagga acatctccga aaaagaaaaa agaaagatta aagtacgcag aggatatcta
    16501 taaacgctat ttgcggatag cagcagagag caagcagaat aatcgaagga tataagagga
    16561 tttatgtctg aggcaaagaa ctcaaatctt gcaccattca ggttattagt gaaactcaca
    16621 aacggtgtcg gggatgagtt tccgttatat tatgggaata acttaattgt tctcggacgg
    16681 acgatagaaa cacttgagtt tggaaacgat aatctcccag aaaatattat tccagtaaca
    16741 gatagtaaat cggatggtat aatttatttg gccataagta aagataatat ctgtcaattt
    16801 agtgatgaaa aaggtgaaca aattgatatc aattcacaat ttaactcatt tgaatatgac
    16861 ggagtttctt ttcaacttaa aaatatgatg gaggataaat cgagagttca tatactaaac
    16921 ggaatgtata ataaaccctc ggtgtttttt ttctttgctg ttattgttgt gttaattata
    16981 attttttccc tctctttaaa gaaagatgaa gtaaaagaaa ttgctgaaat tatagatgat
    17041 aagagatatg gaatagtcaa cacaggacag tgcaattata ttcttgccga aacacaaaat
    17101 gatgcggtat gggcatctgt agccttaaat aaaaccggat ttaccaaatg cagatatatt
    17161 ctggtgtcca acaaagaaat aaatagaatt caacaatata tcaatcaacg attcccatat
    17221 atcaatttgt atgtgttgaa tttagtgagt gataaagcgg aattactggt atttttaagt
    17281 aaagaaagaa atagttcaaa agataccgaa cttgagaaat tgaaaaatgc tctgatagtt
    17341 gaatttccgt atatcaaaaa tattaaattc aactatctta gcgatcataa tgcaagggag
    17401 gatgctaaag gtattttcac aaaggtaaat gtccagtata aagagatttg tgaaactaat
    17461 aaagttacat attctgtcag agaagaactg acagatgaaa agcttgagct cattaataga
    17521 ctgatttctg attataaaaa tgtatatgga gatcagtata ttgagttttc tgtacttttg
    17581 atagatgatg attttaaagg taaatcatat cttaacagca aagacagtta tgtaatgttg
    17641 aatgataaac actggttttt tttagataaa aataagtgag gataaaatga gtgttacagt
    17701 accgaataaa gattggactc tgagttcatt atctgaaact tttgatgatg gaactcaaac
    17761 attacaaagg caactaacat cggcactaga tgcattagct gaaaatcctt cgaatccaca
    17821 gttgctggct gaataccaaa gtaaattatc tgaatataca ttatatagga acgcgcaatc
    17881 taatactgtg aaagtgatta aggatgttga tgctgcaatt attcaaaact tcagataata
    17941 gggagcattc atgaattaca tttatccagt caatcaggtt gatattatca aagccagtga
    18001 ttttcaatct caagagatat caagcctgga agacgtcgtg tcggctaaat atagtgatat
    18061 taagatggat acagatattc aagtatcaca aataatggag atggtaagca atccagaatc
    18121 attaaaccca gaatctttgg ccaagttaca gacgacgctc tcaaattatt caataggagt
    18181 atcattagct ggcacgttag caagaaaaac agtttcggct gttgaaactt tattaaagtc
    18241 ttaatttata tgattaggta taaaggtttt attttattct tgttgctgat gttgattgga
    18301 tgtgagcaac gtgaagagtt aatttctaat ttatctcaaa gacaggcaaa tgaaataata
    18361 tctgtgctag aacgccataa tattactgct agaaaagttg atggaggtaa acaggggatc
    18421 tcggtacaag tcgaaaaggg gacatttgca tcggcagttg atttgatgcg catgtacgat
    18481 ttgccaaatc cggagagagt tgatatctca caaatgtttc ctacagattc attagtgtct
    18541 tctccaagag ctgaaaaggc ccgtttatat agtgctattg agcaacggct ggaacagtct
    18601 ttagtttcta ttggtggtgt tatttcggca aaaatacatg ttagctatga tcttgaagaa
    18661 aaaaatatat cttcaaaacc gatgcatata tcagtaatcg ctatatatga ctcaccgaaa
    18721 gagtctgaac tattagttag taatattaag cgatttttga aaaacacctt ttctgatgtt
    18781 aagtatgaaa atatatctgt catattaact ccgaaagaag aatatgttta tacaaatgta
    18841 caacctgtta aggaaattaa atcggaattt ttaacaaatg aagtaatata tgtatttctc
    18901 gggatggctg tactagttgt cattcttttg gtatgggcat tcaaaacagg gtggttcaag
    18961 agaaacaaaa tatgataaga atggatggaa tttataaaaa atatctttca ataatttttg
    19021 atccagcgtt ctatataaat agaaatcggt tgaatttgcc ttctgaactg ttagaaaatg
    19081 gcgtaatcag aagtgagatt aataatctca taattaataa atatgatcta aattgcgata
    19141 ttgaaccttt aagcggggta accgctatgt ttgttgccaa ctggaattta cttccagctg
    19201 ttgcttattt tatcggtagt caagagtctc ggttaattaa tcatagtgag atggttatta
    19261 gttattatgg gggcaaaatc agtaagcaag gggaggccgc tattcgaagt ggtttttggc
    19321 atcttattgc gtggaaggaa aatatatctg ttggtatata tgaaagaata aacttattat
    19381 ttaatccaat tgctttggag ggaaattata cgcctgtaga aagaaatttg tcccgattaa
    19441 atgaaggtat gcaatatgca aaaaggcact ttaccggtat ccagacatca tgcctatgat
    19501 ggtgttgtta taaagagaat tgaaaaggaa ttatgtaaaa ccataaaaga tagagacact
    19561 gagagtaaga agaaagcaat ttgtgttata aaggatgcta cgaaaaaagc tgaatcactg
    19621 cgtatagatg ctgtatgcga tggttatcaa attggtatac agactgcttt tgagcatatt
    19681 attgactata tttgtgaatg gaagttaaag caaaatgaaa acagaagaaa tattgaggac
    19741 tatataacta gtttgctttc agaaaattta catgatgaga ggatcattag cactttattg
    19801 gagcagtggc ttagttcgtt gcgtaataca gtaacagaat taaaagtggt tttgcccaag
    19861 tgtaatttag cactgaggaa aaagttagaa cttgatctcc ataaatatcg ctcagatgtc
    19921 aagattattt taaaatattc tgaagggaat aattatatat tctgtagtgg taatcaagta
    19981 gtggagttta gtcctcagga tgtaatatca ggtgttaaaa tagaacttgc ggaaaaatta
    20041 acaaaaaatg ataaaaaata tttcaaagag ttagcacatg agaaactgag acaaattgca
    20101 gaagacttgt taaaagagaa tcctgttaat gattaatcaa ataaatgcaa gcaatgctct
    20161 gcagcaaaga ttaaatagtg aagaatttgt taatttaaat gagagattat catcttcgca
    20221 atcatttgat gaggatataa tctatgaaat aatgcaatat ttctcacaga gtgaattaaa
    20281 ttccatagat aatgatgaac tgcacaataa gattgaacaa ttattcaatt cacgttttcc
    20341 ttatcttaca gctgcacaaa aaagttcact tcttaataaa ctcatagatg caaatcaata
    20401 tgtcgatttg catgagggat tttatgcatc attgtccata tataacaata ttgatttcta
    20461 tattaagact acaaccttcg attcattaat tagtgtcttt gaagcaggga gagaggcaga
    20521 tgattcgaca tggtagtaat aagttgagaa tatttatttt aagtatattg ctattaacac
    20581 tgagtgggtg tgctttaaag tcatcatcta attctgaaaa agaatggcat attgttcctg
    20641 taagtaagga ttatttttct attccaaatg atttattatg gtcgtttaat acaaccaata
    20701 aaagtataaa tgtttactct aaatgtatta gtggtaaggc ggtttatagt tttaatgcag
    20761 gtaaattcat gggcaacttt aatgttaagg aagtagatgg atgcttcatg gatgcacaaa
    20821 agatagctat agataaacta ttttctatgc tgaaagacgg ggttgtttta aaaggtaata
    20881 agataaatga taccatcctt atagagaagg atggggaagt taaattaaaa ttaattcgag
    20941 ggatataatt gtattgtgag taaatataaa ggtctaaata caagtaatat gttttacatt
    21001 tactctagtg gacatgaacc agttaacgtt gagcttgtaa aagataaaga acgtaacata
    21061 attgagctgg ctccagcatg gaagggtttt tttttgtccg aaatcaaaat ataaaattca
    21121 gtgataatgt gaactatcat tatcgcttta acattaatag ttgtgcaaaa tttcttgctt
    21181 tttgggacta tttcagtggt gctctagtag agcatagcca tgctgaaaaa tgtattcatt
    21241 tctatcatga gaatgatctt cgggatagtt gtaataccga atcgatgctt gataagttaa
    21301 tgttaagatt catcttttca tctgaccaga atgtaagtaa tgcactggct atgatacgaa
    21361 tgactgagtc atatcatttg gttctttatc ttctgagaac tattgagaaa gaaaaggagg
    21421 taagaataaa gagtctgaca gagcattatg gtgtgtcgga ggcttatttt agatctttat
    21481 gtagaaaagc tttaggggca aaagtcaaag aacaactgaa cacttggcgg ttagtaaatg
    21541 gtttattaga tgtatttttg cacaatcaaa caatcacttc tgctgccatg aataatgggt
    21601 atgcatcaac atcccatttt tcaaatgaga taaaaacacg actaggcttt tctgcaagag
    21661 aattatcgaa tattactttt ttagtgaaaa aaataaatga aaaaatttaa tattaaatct
    21721 ttgactctct tgattgtatt gttaccattg atagttaatg ctaataatat tgactctcat
    21781 ttattagaac aaaatgacat agcgaaatat gttgctcaaa gtgatacggt aggatctttt
    21841 tttgaacgtt tttctgcgtt attaaattat cctattgttg ttagcaaaca agctgcaaaa
    21901 aagagaatat ctggggagtt tgatttatct aatccagaag aaatgcttga aaaaatgaca
    21961 ttacttgtgg gactcatatg gtataaagat ggaaatgcat tatacatata tgactctgga
    22021 gaattaataa gcaaagttat tttgctggag aatatatcac ttaattatct tattcagtat
    22081 ctgaaggatg ctaaccttta tgatcacaga tatcctataa gaggaaacat tagtgataaa
    22141 acattctata tatctggtcc tccggcattg gttgaactgg tagctaatac agcaactttg
    22201 cttgataagc aggtttcttc tattgggaca gataaagtta attttggggt tataaaatta
    22261 aaaaatacat ttgttagtga cagaacttat aatatgagag gggaggatat tgtcatccca
    22321 ggggtggcta ctgttgtaga acgtttatta aataatggta aggctctgag taacagacaa
    22381 gccaaaaatg atccgatgcc accctttaat attacacaga aagtatctga ggatagtaat
    22441 gacttttcat ttagttcagt taccaatagt tctatattag aggatgtatc acttattgca
    22501 tatccagaaa ccaattctat attagtcaaa ggtaatgatc agcaaataca gattattcgc
    22561 gatattatca ctcagttaga tgtagccaaa cgacatatag aattatcatt atggataatc
    22621 gatattgata aatctgaatt aaataacctt ggcgttaatt ggcaaggaac ggcttcattt
    22681 ggtgattcgt ttggtgcatc atttaatatg agctcatcag catcgataag cactttggac
    22741 ggcaataagt ttattgcttc agttatggca ttaaatcaga aaaagaaagc aaatgtagtt
    22801 tcaaggccgg tgattttgac acaagagaat attccggcta tatttgataa taacaggact
    22861 ttttatgtgt cattagttgg tgagcgcaat tcttcgttgg agcatgttac gtatggaaca
    22921 ttgataaatg ttatacctcg cttttcatct cggggacaaa ttgagatgtc tttaacgata
    22981 gaggatggaa caggaaatag tcagtcaaat tacaattata ataatgaaaa tacatctgtc
    23041 cttccagaag ttggaaggac caaaatcagt acaatagcga gagttccaca aggcaaaagt
    23101 ttgttgatag gtggttatac gcatgaaacg aactctaacg aaatagtatc tattcctttt
    23161 ctctcctcta ttcctgtaat cggtaatgtg ttcaagtata aaacaagtaa tatcagtaat
    23221 attgtaaggg tttttctgat tcaaccccgt gagataaagg agtcaagtta ttataatact
    23281 gcagaatata agagcctcat atctgaaaga gaaatacaaa agactacaca aataatccca
    23341 tctgaaacta ctttgctgga agacgaaaaa tcattggttt catacttaaa ttactaacta
    23401 taaagtaggt gatgtatgct tgatgttaaa aatacaggag tttttagctc tgcattcatt
    23461 gataagttga atgcaatgac aaattcagat gatggagatg agactgctga tgcagagctt
    23521 gattctggct tggctaatag caagtatatt gactcatctg atgagatggc ttccgctctt
    23581 tcgtcattta taaacagaag agaccttgag aaactgaaag gaacaaatag tgatagtcag
    23641 gaacgtattt tagatgggga agaagatgaa attaatcaca agatttttga tttaaagaga
    23701 actttaaaag ataaccttcc tctagatcag gattttatag acagactaaa gagatatttt
    23761 aaagatccaa gtgatcaagt cttagcatta agggaacttt tgaatgaaaa agatcttact
    23821 gctgaacaag tcgaatcatt aactaaaatt attaatgaga taatatcagg tagtgaaaaa
    23881 agtgttaatg ctggaataaa ttcagctata caggctaaat tatttggcaa caaaatgaaa
    23941 cttgaaccac agcttttgcg tgcatgttat cgtggtttta tcatggggaa catatcaaca
    24001 acagatcagt atatagaatg gcttggtaat tttggtttta atcacagaca tacaattgtg
    24061 aattttgtag agcagtcact gattgtagac atggattctg agaaaccgag ctgtaatgct
    24121 tatgagtttg gttttgtgtt atctaaatta attgcaatta agatgattag aacttcagat
    24181 gtaattttta tgaagaaact ggaatcctca agcttgctaa aagatggcag tttaagtgca
    24241 gagcagctat tgctaacttt attatatatt tttcaatatc caagtgaaag tgagcaaatt
    24301 cttacttctg ttatagacgt atcacgagcc agtcatgagg attctgtagt gtatcaaaca
    24361 tatctatctt ctgttaatga aagtcctcat gatatattta aaagtgaaag tgaaagagaa
    24421 attgcgatca atattctacg agagcttgtc acaagtgcat acaagaaaga gctttctaga
    24481 taacaggaga tgaaagtgat ccagtctttt cttaagcaag taagtactaa gcctgaatta
    24541 attatattag tgcttatggt tatgatcatt gctatgttga tcataccatt acctacatac
    24601 cttgttgatt ttttaatagg gcttaatatt gtacttgcta ttctcgtttt tatgggatca
    24661 ttttatattg aaagaatatt gagtttttct acattccctt cggttttgtt gataacgaca
    24721 ttatttcgtc tcgctttatc aataagtact agtcgactaa ttttagttga tgcggatgcg
    24781 ggtaaaatta ttactacatt tggccagttt gtcattggtg atagtctggc tgtaggtttt
    24841 gttatttttt caatagtaac tgttgtgcag ttcattgtta taacaaaagg atctgaaagg
    24901 gttgcggagg tagctgctcg cttttctctt gacggtatgc cggggaaaca aatgagcatt
    24961 gatgcggatt taaaggctgg aattattgat gccgcaggag ctaaagaaag acgcagtatt
    25021 ctggaacgtg agagtcaatt gtatggttca tttgatggag caatgaagtt cattaaaggt
    25081 gatgcaattg ctggcatcat tattattttt gtcaatttaa taggaggtat ttctgttggt
    25141 atgagtcaac atggaatgtc tctatctggt gcattatcta cttataccat actaactatt
    25201 ggtgacggat tggtctctca gattcctgct ctgttaattt ctataagtgc aggatttatc
    25261 gttacaagag ttaatggtga tagcgataat atgggacgta acataatgtc ccagatattt
    25321 gggaatcctt ttgttctcat tgttacatca gctcttgcct tggcgatagg gatgttgcca
    25381 ggttttccgt tttttgtttt tttcctgata gcagttactt tgacggcttt attctattat
    25441 aaaaaggtcg tagaaaaaga aaaaagtctg tctgagtctg attctagtgg ctatactggt
    25501 acatttgata ttgataatag caatgactca tctttggcaa tgatagaaaa tctggatgct
    25561 attagttcag aaaccgttcc tttaatttta ttatttgccg aaaataagat aagtgcaaat
    25621 gatatggaag gtcttattga aaggataaga agtcagttct ttattgatta tggtgtcagg
    25681 cttccaacta ttttatatag aacaagcaat gagcttaagg tcgatgatat tgttttgtta
    25741 ataaatgagg tgcgtgccga tagttttaat atatactttg acaaagtgtg tattacagat
    25801 gaaaatggag atatagatgc tctaggtatt cctgttgttt caacttcata taatgaacgt
    25861 gttatttctt gggtagacgt ttcatataca gaaaatctaa ctaatattga tgctaaaatt
    25921 aaaagtgctc aagatgaatt ttatcaccag ttgtcacaag ctttattaaa caacataaat
    25981 gagatttttg gtatacaaga aacaaaaaat atgttagatc agtttgaaaa tcggtatcct
    26041 gatctattaa aggaagtctt ccgacatgtg actatacaga gaatttctga ggtattacaa
    26101 agattgcttg gagaaaatat ttctgttcgc aatttaaaac ttattatgga gtctttggcg
    26161 ctttgggctc ccagagaaaa agatgtcata acattagttg aacatgtccg tgcatcactt
    26221 tctaggtata tttgtagtaa aatagctgtt tctggtgaga ttaaagttgt gatgctttcc
    26281 ggatatattg aggatgcaat aagaaaaggg ataaggcaaa cctctggtgg ctctttcttg
    26341 aatatggata tagaggtttc ggatgaggta atggaaactt tagcacatgc tttgagagaa
    26401 ttgagaaatg caaaaaaaaa tttcgttctt ttggtatcag tagatatacg taggtttgtt
    26461 aaaagactta tagataacag atttaagagt atactcgtta tatcgtatgc tgagattgat
    26521 gaagcatata ccattaatgt attaaagact atttagtgag gtttaaatat gagtaacatt
    26581 aatttagttc aattagttag agatagtctt ttcacgattg gttgtcctcc atcaattatt
    26641 acagatttag acagccattc agcgattacc atttctttgg atagtatgcc tgctattaat
    26701 atagctcttg tcaatgagca ggttatgtta tgggctaatt tcgatgcacc aagtgatgta
    26761 aaacttcagt catctgctta taacatatta aatttaatgt taatgaactt tagttatagc
    26821 attaatgagc tggtagagct tcatcgttct gatgagtact tacagttaag agttgttatt
    26881 aaagatgact acgttcacga tgggattgtt tttgcagaga ttctgcatga gttttatcag
    26941 aggatggaaa tcttaaatga ggtcttataa tcaatgagct atataaaatt gctcactcaa
    27001 ttatcttttc ctaatagaat ctcggggcca atcttggaaa caagtcttag tgatgtttcg
    27061 attggtgaga tttgtaacat tcaggctgga attgaaagta atgaaattat tgcaagagct
    27121 caggttgtag gatttcatga tgaaaaaaca atattaagct tgattggaaa ttctcgtgga
    27181 ctttcacggc aaacgttgat taagcccact gcccagtttc ttcatacgca agtcggccgt
    27241 ggattattgg gagcagtagt caatccttta ggggaggtta ctgataagtt tgctgttacg
    27301 gataacagtg aaattcttta tcgacctgta gataatgctc ctccgctata tagtgaaagg
    27361 gctgcaattg agaagccttt tttaacaggt gttaaggtta ttgattcttt actcacgtgt
    27421 ggtgaaggac agcgaatggg gatttttgcg tcagctggtt gtggcaaaac ttttctcatg
    27481 aatatgctca ttgaacatag tagtgctgat atatatgtta ttgggttaat tggtgagcga
    27541 ggtcgagagg ttacagaaac ggttgattat ttgaaaaact ctgagaaaaa aagcaggtgt
    27601 gttttagtat atgcaacttc ggattactct tcggttgatc gttgtaatgc tgcatatata
    27661 gccactgcta tagccgaatt ttttaggact gaaggacata aagtagcgct ttttattgat
    27721 tcattaacaa ggtatgccag agcattacgt gatgtggcct tagccgctgg agaatcacct
    27781 gccagaagag gctatccggt ttcggttttt gatagcttac ccagacttct tgaaaggcca
    27841 ggaaagttaa aggcaggtgg ctctattact gcattttaca ctgttctttt ggaggatgat
    27901 gattttgctg atccattagc tgaagaggta agatccattt tagatggaca tatatatttg
    27961 agcagaaatc tagcccaaaa aggacaattt cctgcaattg attccttaaa aagtataagc
    28021 agggtattta cacaggttgt tgatgaaaaa catcgtatta tggccgctgc atttcgggag
    28081 ctactttctg aaatagaaga gctaaggaca attattgact ttggtgaata caaaccgggg
    28141 gagaatgcct ctcaggataa aatctacaac aaaatatctg ttgttgagag ttttctgaag
    28201 caagattatc gactcggttt tacttatgag cagacaatgg agcttattgg tgaaacaatt
    28261 agataaggtt ttaaaaatca aagataaata tcaacggtct gttaaattaa ttgaagcaca
    28321 catattaaca ctaaaaaaaa aactctttgt atcgagatgt ggaggcatta gataaaagga
    28381 ttatatactt cctgcaactg gagaatgact tggaacctat aggcgctcag agtgttagtc
    28441 agcttttcaa tacaagacgt aagatcgcta tagtaaaaaa gcatattatc caatatcagt
    28501 ctgaacgaat tcttctaaag ggaagaattg aagaaattca aaaagatatt gatgaggcaa
    28561 atgcttctaa aagaaaactg cttcataaag agagtaaaat atgtaaacgg attggcttga
    28621 ttaaaagaaa taactttgcc aaacagttga tacttgatga gttatcacaa gaggatatga
    28681 agtatggcat tagataatat aaacctaaat tttagtagtg acaaacagat agaaaaatgt
    28741 gagaaactat cttcaataga taatattgat agtctcgttt tgaagaagaa gaggaaggtt
    28801 gaaattcctg agtactcttt aattgcatct aactatttta ctattgataa gcactttgaa
    28861 cataagcatg ataaaggaga aatttatagt ggcattaaaa atgcgttcga acttagaaac
    28921 gaacgagcga catattctga tattccagaa tcaatggcca ttaaagaaaa tattttgata
    28981 ccagatcaag atatcaaagc aagggaaaaa ataaatatcg gcgatatgag ggggatcttt
    29041 tcatataata agagtggaaa tgcagacaag aacttcgaaa gaagtcatac ttcttctgta
    29101 aaccctgata atctgctaga atctgataat agaaatggtc aaattggttt aaaaaatcat
    29161 agcttgtcta ttgataagaa tattgctgac atcatttctt tactaaatgg aagtgttgct
    29221 aaatcatttg agcttcctgt aatgaataaa aatactgcag acataacccc atccatgtca
    29281 ttgcaagaaa aatcaatagt tgaaaatgat aaaaatgttt ttcaaaaaaa tagtgaaatg
    29341 acttaccact ttaaacagtg gggggctgga cattctgtta gtatttcagt ggagtctggt
    29401 tcttttgttc taaaaccgtc agatcaattt gtaggaaata aacttgactt aattttgaaa
    29461 caagatgctg agggtaatta cagatttgat agcagtcaac ataataaggg gaataaaaat
    29521 aatagtacag gatataatga acagagtgaa gaagaatgct aagaattaaa cattttgacg
    29581 ctaacgaaaa actacagatt ttatatgcaa agcaactctg cgagcgtttt tcgattcaga
    29641 cattcaaaaa tgaatttaca ggcagtgaaa gtttagtcac tcttatttcc ttgtgtgggg
    29701 attgggtaat tcgtattgat acattatctt ttttgaaaaa aaaatacgag gtattttcag
    29761 gattttctac acaagaatct ttactgcatt tatcaaaatg tgtctttata gagtcgtcat
    29821 ctgtattttc gattccagaa ctgtctgata agattacttt ccggatcacg aatgaaatcc
    29881 agtatgcaac tactgggagt catttatgct gtttttcctc ttctttaggt attatttatt
    29941 ttgacaagat gccggtatta cgtaatcaag tttctcttga cttattgcat catcttttag
    30001 agttttgctt aggttcatct aatgtaaggc tggctacttt aaaaagaatt cgtactggtg
    30061 atataatcat agttcagaaa ctttataatt tattattgtg taatcaagtt attattgggg
    30121 attatattgt gaatgataat aatgaggcaa aaattaatct gtcagaaagt aatggtgagt
    30181 cagatcacac agaagtttct ttggcattat tcaattatga tgatatcaat gtaaaagtgg
    30241 actttatcct tttagaaaaa aagatgacaa tcaatgaact aaaaatgtat gtagaaaacg
    30301 aattattcaa gtttcccgat gacatagtta aacatgtaaa tattaaagta aatggttctt
    30361 tggttgggca tggggaactt gtttctattg aggatggtta tggtatcgag attagttctt
    30421 ggatggtaaa ggagtaatct catgctgagt gatatgtccc tcatcgctac actttctttt
    30481 tttacgctat taccattttt agttgctgct ggtacttgtt atataaagtt ttctattgtt
    30541 tttgtaatgg tacgaaatgc acttggtttg cagcaggttc catcaaatat gactctcaat
    30601 ggtattgcat tgattatggc tttgttcgtg atgaaaccca ttattgaagc tggttatgaa
    30661 aattatctaa atggcccgca aaaatttgat acaatatcag atattgtccg tttttctgat
    30721 tctggcttga ttgaatacaa gcaatacttg aaaaagcata cagatcttga gttggcacgt
    30781 tttttccaaa ggtctgaaga agaaaatgct gatttaaaga gtgcagagaa taatgattat
    30841 tcattgtttt ccctcttgcc tgcatatgcg ctaagtgaaa ttaaagatgc gttcaaaata
    30901 ggtttttatt tatatttgcc atttattgtt gttgatcttg ttatttcaag cattttactt
    30961 gcacttggta tgatgatgat gagtccaatc acaatatcag taccaataaa acttgtatta
    31021 tttgttgcgc ttgatgggtg ggggatcctg tctaaggcct tgattgaaca atatatcaat
    31081 gttcctgctt agatgatgga ggtaatgtgt ctgatatagt ttatatgggt aataaggctc
    31141 tttatttaat ccttatcttt tccttatggc cagtaggtat agctacggtt attggattaa
    31201 ctattggttt attacagaca gtgactcaac ttcaagagca gacacttcct tttggtataa
    31261 agcttatagg tgtctcaata tctttgctac ttctttctgg atggtatggt gaggttttat
    31321 tgtctttttg tcatgaaata atgtttttaa ttaagagtgg ggtttgatgg acatttcaag
    31381 ctggttcgaa agtattcatg tgtttttaat actcctgaac ggcgtttttt ttagattggc
    31441 tccattattt ttctttcttc catttttaaa taacggtata atttctccat ctattagaat
    31501 acctgtgatt tttcttgttg catcaggatt aattacttct ggtaaggtag acataggttc
    31561 ttctgttttt gaacatgttt atttccttat gttcaaggaa ataattgttg gcctccttct
    31621 ctctttttgc ttgtctcttc ccttttggat atttcatgct gttggtagca ttattgacaa
    31681 ccagcgtggg gcaacgctta gtagttcaat tgatcctgcc aatggtgttg atacgtctga
    31741 gttggcaaaa tttttcaatc ttttttctgc agttgtattt ctatacagtg gtggaatggt
    31801 ctttatttta gaatccatac aattgtctta taatatatgc ccgttatttt ctcaatgttc
    31861 tttccgtgtc tcaaatatct taacatttct gactttattg gcaagtcagg ctgttatttt
    31921 agccagtcct gttatgatag tattgttact atcagaagta ttacttggtg tattatcgag
    31981 atttgctccg cagatgaatg ctttttccgt atcattaact attaaaagtt tacttgcaat
    32041 atttattatt ttcatctgtt cttctactat ttacttttct aaagttcaat ttttcctcgg
    32101 tgaacataaa tttttcacaa atctatttgt tagataaaat attatggcaa ataaaacaga
    32161 aaagccgaca cctaaaaaac taaaggatgc cgcaaaaaaa gggcagtcat ttaaatttaa
    32221 ggatttaacg acagttgtta ttattctggt agggacattt actataatat cattcttttc
    32281 cttaagtgat gtaatgctct tatacagata tgtaataatt aatgacttcg aaattaatga
    32341 gggtaaatac ttttttgcag tggttattgt cttttttaag ataattggct tcccactttt
    32401 tttctgtgtt ctttcggctg tgttgccaac attggttcaa acaaagtttg ttcttgcgac
    32461 taaagctatc aagattgatt tttcagtatt aaaccctgtt aaagggttaa aaaaaatatt
    32521 tagtataaag acaataaaag aatttttcaa aagcattctg cttcttatta ttctagcatt
    32581 aacaacctat ttcttttgga ttaatgaccg aaaaataatt ttttctcagg tgttttctag
    32641 tgttgatggc ttatatctta tttggggggg gctgtttaag gatataatat tatttttctt
    32701 agcattttct atttttgtta ttattcttga ctttgtgatt gagttcattt tatacatgaa
    32761 agatatgatg atggataaac aggagataaa aagagaatat atagagcaag agggacactt
    32821 tgagacaaag tcgagaaggc gtgagttgca tatcgagatt ctttcagagc agactaaatc
    32881 tgatatacgt aattcaaaat tagtggtaat gaacccgact catattgcaa ttggtattta
    32941 ttttaatcca gaaatagcgc ctgcaccttt tatttctctc attgaaacta accagtgtgc
    33001 cttggctgtc agaaaatatg caaatgaagt tggtatacca actgtgcgtg atgtgaaatt
    33061 agctagaaaa ctatataaaa cacatacaaa atatagtttt gttgattttg aacacttgga
    33121 tgaagtccta cgtcttattg tttggcttga gcaggttgaa aacactcatt aataagtaaa
    33181 ggagatgtgt tatatgggag ttaatttctg taataaaata ggtattgatc agtctgaatt
    33241 tgaaatagaa tcttccatca ttaactccat tgctaatgag gtattgaacc caatatcttt
    33301 ccttagcaac aaggatataa taaatgtttt actcagaaag atttcatctg aatgtgacct
    33361 ggttagaaaa gacatttatc gttgtgctct tgagttggtc gttgaaaaaa cacctgatga
    33421 tttataatca ttcataataa ctcttttgct gatataaata tttttgttga agatatttat
    33481 gtagtcacag gatcaattgt agaaaattgt tatgtttttg ttaggaaatg aactaaataa
    33541 tatatgataa gacagcaaaa acgactgacc ataatccttc ttttattagg agttgataag
    33601 agagactatt catcctgtaa tgttaaaact ctgttatata gtattcgcga ttatgcaaag
    33661 tctgtaaatg atcatgagat actaaccgag agtaatcgtt tattatctca ttgcatttca
    33721 gatagtaacg gagctttctt taaaagtagt aaatacgttc cccttaagta cttacgtaaa
    33781 aggagaatag cacgaaagat accaaatgat tagcactttg ctagtaagct tgctggtaaa
    33841 ctatattgac cgttgggttt gttttgagac tgtaatttaa attgtgtaat tgcctgtttt
    33901 tgatatgttt actccaacaa cggagacagg taaattatgg acgaaaagaa gcttaaagcc
    33961 cttgcggctg aactggctaa aggcctcaaa actgaggccg acctcaatca gttttcccgt
    34021 atgctgacga aatatcccgg ctcttaaaac gatagtggct caggctttca tttttcagcg
    34081 ttccccagaa g
//
LOCUS       DAJVUN010000023        34054 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.023, whole genome shotgun sequence.
ACCESSION   DAJVUN010000023 DAJVUN010000000
VERSION     DAJVUN010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34054)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34054)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34054
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.023"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..214
                     /locus_tag="OQQ76_000871"
                     /pseudo
     CDS             1..214
                     /locus_tag="OQQ76_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416774.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="aminopeptidase"
     gene            317..712
                     /locus_tag="OQQ76_000872"
     CDS             317..712
                     /locus_tag="OQQ76_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005136682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbM family protein"
                     /protein_id="HCS1967458.1"
                     /translation="MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRRLDIDK
                     RWDFLHFGLTGTPGFDPAKNDPLSRAVLGEHSLEDGIDGFLGLTWNQELAATIDRLES
                     LDRSKLRKQFSIKRLNEMEIYPGVTFSEE"
     gene            complement(887..2344)
                     /gene="nuoN"
                     /locus_tag="OQQ76_000873"
     CDS             complement(887..2344)
                     /gene="nuoN"
                     /locus_tag="OQQ76_000873"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HCS1967459.1"
                     /translation="MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNNFLNATLSVIG
                     LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK
                     DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT
                     ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGMMIVGLGFKL
                     SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAII
                     AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGGYLAGYL
                     FSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGF
                     IGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQY
                     SAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM"
     gene            complement(2351..3880)
                     /gene="nuoM"
                     /locus_tag="OQQ76_000874"
     CDS             complement(2351..3880)
                     /gene="nuoM"
                     /locus_tag="OQQ76_000874"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HCS1967460.1"
                     /translation="MLLPWLILIPFIGGFLCWQTERFDVKVPRWIALITMGLTLALSL
                     QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV
                     LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK
                     ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSD
                     VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL
                     PLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS
                     QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA
                     VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS
                     QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR
                     P"
     gene            complement(4044..5885)
                     /gene="nuoL"
                     /locus_tag="OQQ76_000875"
     CDS             complement(4044..5885)
                     /gene="nuoL"
                     /locus_tag="OQQ76_000875"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HCS1967461.1"
                     /translation="MNMLAFTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV
                     TAFIGVDFFANGEQAYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY
                     ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
                     PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA
                     TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT
                     PEILHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH
                     LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYFCFLVGGAALSALPLV
                     TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG
                     VTHSLPLIVLLILSTFVGALIVPPLQSVLPQTTELAHGSMLTLEITSGVVAVVGILLA
                     AWLWQGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN
                     SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR"
     gene            complement(5882..6184)
                     /gene="nuoK"
                     /locus_tag="OQQ76_000876"
     CDS             complement(5882..6184)
                     /gene="nuoK"
                     /locus_tag="OQQ76_000876"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HCS1967462.1"
                     /translation="MIPLQHGLILSAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL
                     AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG"
     gene            complement(6181..6735)
                     /gene="nuoJ"
                     /locus_tag="OQQ76_000877"
     CDS             complement(6181..6735)
                     /gene="nuoJ"
                     /locus_tag="OQQ76_000877"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HCS1967463.1"
                     /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF
                     SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI
                     MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR
                     EERAGEVLSNRKDDSAKRKTEEHA"
     gene            complement(6747..7289)
                     /gene="nuoI"
                     /locus_tag="OQQ76_000878"
     CDS             complement(6747..7289)
                     /gene="nuoI"
                     /locus_tag="OQQ76_000878"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HCS1967464.1"
                     /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY
                     RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC
                     GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG
                     KDKGEAENEAKPIDVKSLLP"
     gene            complement(7304..8281)
                     /gene="nuoH"
                     /locus_tag="OQQ76_000879"
     CDS             complement(7304..8281)
                     /gene="nuoH"
                     /locus_tag="OQQ76_000879"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HCS1967465.1"
                     /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ
                     NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP
                     VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL
                     GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE
                     QELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTA
                     FFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ"
     gene            complement(8278..11004)
                     /gene="nuoG"
                     /locus_tag="OQQ76_000880"
     CDS             complement(8278..11004)
                     /gene="nuoG"
                     /locus_tag="OQQ76_000880"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HCS1967466.1"
                     /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA
                     CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD
                     CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY
                     YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK
                     WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK
                     DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE
                     ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA
                     VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP
                     VEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLE
                     VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV
                     LENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE
                     GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE
                     LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG
                     NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS
                     VPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT
                     RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ"
     gene            complement(11057..12394)
                     /gene="nuoF"
                     /locus_tag="OQQ76_000881"
     CDS             complement(11057..12394)
                     /gene="nuoF"
                     /locus_tag="OQQ76_000881"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HCS1967467.1"
                     /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG
                     LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR
                     LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI
                     MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN
                     VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED
                     YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN
                     MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG
                     PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW"
     gene            complement(12391..12891)
                     /gene="nuoE"
                     /locus_tag="OQQ76_000882"
     CDS             complement(12391..12891)
                     /gene="nuoE"
                     /locus_tag="OQQ76_000882"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HCS1967468.1"
                     /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY
                     QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE
                     LLERYK"
     gene            complement(12894..14696)
                     /gene="nuoC"
                     /locus_tag="OQQ76_000883"
     CDS             complement(12894..14696)
                     /gene="nuoC"
                     /locus_tag="OQQ76_000883"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HCS1967469.1"
                     /translation="MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATR
                     TGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHL
                     ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM
                     PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFL
                     NLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE
                     YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT
                     PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLA
                     SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF
                     DFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERT
                     LQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY
                     AHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR"
     gene            complement(14790..15452)
                     /gene="nuoB"
                     /locus_tag="OQQ76_000884"
     CDS             complement(14790..15452)
                     /gene="nuoB"
                     /locus_tag="OQQ76_000884"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HCS1967470.1"
                     /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND
                     MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC
                     FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP
                     RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD
                     EI"
     gene            complement(15468..15911)
                     /gene="nuoA"
                     /locus_tag="OQQ76_000885"
     CDS             complement(15468..15911)
                     /gene="nuoA"
                     /locus_tag="OQQ76_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoA"
                     /protein_id="HCS1967471.1"
                     /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR
                     SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE
                     AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR"
     gene            complement(16542..17480)
                     /gene="lrhA"
                     /locus_tag="OQQ76_000886"
     CDS             complement(16542..17480)
                     /gene="lrhA"
                     /locus_tag="OQQ76_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LrhA"
                     /protein_id="HCS1967472.1"
                     /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ
                     QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT
                     IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA
                     FKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYV
                     ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL
                     AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE"
     gene            18400..19617
                     /gene="alaA"
                     /locus_tag="OQQ76_000887"
     CDS             18400..19617
                     /gene="alaA"
                     /locus_tag="OQQ76_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase AlaA"
                     /protein_id="HCS1967473.1"
                     /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA
                     PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN
                     GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD
                     IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA
                     EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL
                     CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM
                     FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL
                     SKFARFLSGYHQL"
     gene            19701..20300
                     /gene="yfbR"
                     /locus_tag="OQQ76_000888"
     CDS             19701..20300
                     /gene="yfbR"
                     /locus_tag="OQQ76_000888"
                     /EC_number="3.1.3.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
                     /protein_id="HCS1967474.1"
                     /translation="MKQSHFFAHLSRLKLINRWPLMRNVLTENVSEHSLQVAMVAHAL
                     AAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQ
                     KLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAK
                     TRLEATLEARRSQEMDYFMEVFVPSFHLSLDEISQDSPL"
     gene            complement(20359..22191)
                     /locus_tag="OQQ76_000889"
     CDS             complement(20359..22191)
                     /locus_tag="OQQ76_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HCS1967475.1"
                     /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT
                     VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV
                     AGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV
                     VNSELLREGYHGFSFFSVTPVGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR
                     DLIREYRLTGRARRLAIRPGSAMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN
                     GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE
                     SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML
                     AKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLM
                     GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM
                     LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV
                     SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF"
     gene            complement(22278..22928)
                     /gene="hxpA"
                     /locus_tag="OQQ76_000890"
     CDS             complement(22278..22928)
                     /gene="hxpA"
                     /locus_tag="OQQ76_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpA"
                     /protein_id="HCS1967476.1"
                     /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH
                     GKQAITSLRHFMAGKSEADIAAEFTRLEHIEATETEGITALPGAIALLNHLNKAGIPW
                     AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV
                     AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ"
     gene            complement(22939..23433)
                     /locus_tag="OQQ76_000891"
     CDS             complement(22939..23433)
                     /locus_tag="OQQ76_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbU family protein"
                     /protein_id="HCS1967477.1"
                     /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM
                     RELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEAR
                     YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQ
                     IINA"
     gene            complement(23517..23972)
                     /locus_tag="OQQ76_000892"
     CDS             complement(23517..23972)
                     /locus_tag="OQQ76_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HCS1967478.1"
                     /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT
                     RYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI
                     LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL"
     gene            24310..25512
                     /gene="ackA"
                     /locus_tag="OQQ76_000893"
     CDS             24310..25512
                     /gene="ackA"
                     /locus_tag="OQQ76_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HCS1967479.1"
                     /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI
                     KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS
                     VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE
                     SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS
                     AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL
                     LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGI
                     GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA
                     QDASRLTA"
     gene            25587..27731
                     /gene="pta"
                     /locus_tag="OQQ76_000894"
     CDS             25587..27731
                     /gene="pta"
                     /locus_tag="OQQ76_000894"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1967480.1"
                     /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR
                     TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA
                     EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG
                     GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL
                     GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL
                     LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT
                     NTWQTSLSLQSFNLEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF
                     RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV
                     ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG
                     LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL
                     AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP
                     LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG
                     MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ"
     gene            27921..29441
                     /gene="yfcC"
                     /locus_tag="OQQ76_000895"
     CDS             27921..29441
                     /gene="yfcC"
                     /locus_tag="OQQ76_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative basic amino acid antiporter YfcC"
                     /protein_id="HCS1967481.1"
                     /translation="MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQ
                     EVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRIQLFTTGDERPGLMNFPFEGLTS
                     GSKYGTAVGIIMFMQVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSL
                     GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ
                     GIAGVPVLSGSGLRIVVWVIATMIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQAD
                     VEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRL
                     NGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAI
                     SGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFG
                     DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGAPLLGLLFIMSSVVVIGAQLMGYH"
     gene            complement(29474..30016)
                     /gene="yfcD"
                     /locus_tag="OQQ76_000896"
     CDS             complement(29474..30016)
                     /gene="yfcD"
                     /locus_tag="OQQ76_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase YfcD"
                     /protein_id="HCS1967482.1"
                     /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV
                     HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE
                     HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
                     LALWMKRNAKNEAVETETAE"
     gene            complement(30074..30625)
                     /gene="yfcE"
                     /locus_tag="OQQ76_000897"
     CDS             complement(30074..30625)
                     /gene="yfcE"
                     /locus_tag="OQQ76_000897"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311211.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HCS1967483.1"
                     /translation="MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRN
                     ALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFL
                     THGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGML
                     DNDVLSVIALNDQSIIAQVAINP"
     gene            complement(30681..31325)
                     /gene="yfcF"
                     /locus_tag="OQQ76_000898"
     CDS             complement(30681..31325)
                     /gene="yfcF"
                     /locus_tag="OQQ76_000898"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase"
                     /protein_id="HCS1967484.1"
                     /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE
                     HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA
                     RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLALGQPNL
                     FGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG"
     gene            31461..32108
                     /gene="yfcG"
                     /locus_tag="OQQ76_000899"
     CDS             31461..32108
                     /gene="yfcG"
                     /locus_tag="OQQ76_000899"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GSH-dependent disulfide bond oxidoreductase"
                     /protein_id="HCS1967485.1"
                     /translation="MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL
                     RISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLF
                     WQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS
                     IADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS"
     gene            32165..32527
                     /gene="folX"
                     /locus_tag="OQQ76_000900"
     CDS             32165..32527
                     /gene="folX"
                     /locus_tag="OQQ76_000900"
                     /EC_number="5.1.99.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate 2'-epimerase"
                     /protein_id="HCS1967486.1"
                     /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK
                     ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK
                     LHALRYADSVSMTLSWQR"
     gene            32548..33441
                     /locus_tag="OQQ76_000901"
     CDS             32548..33441
                     /locus_tag="OQQ76_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HCS1967487.1"
                     /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR
                     VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINAS
                     DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL
                     LRTGVLLAPDGGILGKMLPPFRLGLGGPIDSGRQYLAWIHIDDMVNGILWLLDNELRG
                     PFNMVSPSPVRNEQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRAMPKRL
                     EEAGFAFRWYDLEEALADVVR"
     gene            complement(33489..>34054)
                     /gene="rpnB"
                     /locus_tag="OQQ76_000902"
     CDS             complement(33489..>34054)
                     /gene="rpnB"
                     /locus_tag="OQQ76_000902"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS1967488.1"
                     /translation="GYKELPLVIPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSA
                     FPLVDITVVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKA
                     LFNYVLQTGDAQRFRAFIGEIAERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQE
                     MLDRGLDRELVMMVTRLSPDDLIAQSH"
BASE COUNT         8508 a         9291 c         8558 g         7697 t
ORIGIN      
        1 ctgtttattc tatgaatgcc ccatggttta ttcccggtat tgatttctct gaccacctga
       61 attattggca acacgatatt cccgccgtaa tgattactga caccgctttt tatcgtaata
      121 aacaatacca cttgcccggt gatacagcag acagattgaa ttatcagaaa atggctcaga
      181 tggtgttata accttgttac acaacagtaa ataataaaaa tttctcgagg cgggtccaga
      241 aacagcgaca tgtacatttt attttccctc gtctgtttta agatgcgaaa cataaaattc
      301 aatggaggaa aaataaatgg gaatgattgg ttattttgca gaaattgact cagaaaagat
      361 taaccaactg cttgagtcta ctgaaaaacc tttgatggat aatatacatg acacgctttc
      421 aggattacgc cgactggata ttgataaacg ctgggatttt ttacactttg ggctgacagg
      481 cacccctggt tttgatcccg cgaagaatga tccgctgagt cgtgccgtgc ttggtgaaca
      541 cagcctcgaa gatggcatag atggcttcct gggattgacc tggaatcagg aattagccgc
      601 gacaatcgac cgactggaat cactggatcg aagtaagctg cgtaaacagt tttccattaa
      661 gcgactcaat gaaatggaga tttatccggg agtgaccttt tcagaagagt gagaggggca
      721 actctttgcc tcgatcatgc ttgatatgga aaagctgatt agcgcgtatc gacgtatgct
      781 gcgacaaggg aatcatgcgc tgacggttat tgttcggtga tggtgtcaga gcgccaaaaa
      841 aaaccgccga acatgtcggc ggctttctga cttacaaact aacagattac atcagcggca
      901 ttgctaaccg cacaatacta atcagcggtt gtggccatac acccagcacc agtaccaaca
      961 gtgcagaaat cagcaccacg ataccgcccg cgctgtactg ccagtttgac ggtgcatcgc
     1021 gacccggttg ttccggtgcg tgcaggtaca ggctcaccgc cacgcgcagg tagtagtaga
     1081 ggccgattgc cgaaccgaca accacggcac ccaccagcca ccacaagtgt gcctggacac
     1141 cgaccgccag cacgtagaac ttaccgataa agcccagcgt catcgggata ccggccagag
     1201 acagcatcat caccgtcatc actgccgcga ggatcggacg atgccagaac agaccgcggt
     1261 aagagaacag ggaatcagca tccgggccac gatacgggct ggacatcagg ctgaccacgc
     1321 cgaacgcgcc gaggctgctg aacagataac cggccaggta accccctacc gcttccatcg
     1381 acatctcgcc ggtttgcagc gcaatcagcg ccaccagcag atagccgagg tgagagatag
     1441 atgagtaacc gagcagacgt ttgatgttgg tctggctcaa cgccatcagg ttaccgaaga
     1501 tgatggaggc aaaggcgata atcgccagta ctacgcgaat cgcttcgctg tcacccaccg
     1561 gtgcatagag gaacagacgc atcaccacac cgaagatagc gattttgctc gccgtcgcca
     1621 ggaaagtgga aaccggcgca ggcgcgcctt ggtatacgtc tggcgtccac aggtggaacg
     1681 gcaccagaga gagtttgaag ccgaggccaa caatcatcat gccgaaacct gccagcaaca
     1741 gcggctcgtt gagcataccg tcgccgaggt ttttacccag cgcgacaaac gacaggtcgc
     1801 cagactgcgc atacaccagc gccataccga acagcaggaa agaagacgct gcggcagaaa
     1861 ggatggtgta tttgatactg gcttccagcg aacgtttctg gcggaaagcg taaccgacca
     1921 ggccaaacag cggcaaagag atcagttcaa taccgaggaa cagagacgcc agatggtttg
     1981 cattcgccag caggatcccg cccagcgcgg caattaacac caacaggtag aactcatcct
     2041 tgttgtcgtt atagccttca agccacgggt aggcgaaagt acaggtggcg aggctcgcca
     2101 acaataccag cccggtgtaa agcatggcga aaccatcaac gcgcatcagc ggcgtaacgt
     2161 ccatagcgcc cgcctggcca acaaaccaga gcgaaaccag cgccgcgtta agcccaataa
     2221 ccgagagcgt agcgttgagg aaattattgc gtcgccacgc aatggagagc atcacaacca
     2281 ccaccgttaa gccgacgatc agcaacggta gcagtgcgat caggttttgt ggagttattg
     2341 tcatggcgat ttacggcctt gtagtagtaa cggaattaac aaaccactgc tggatattgc
     2401 caatcgcgga gtgcgaggta tccagaatcg gctgcggata gaagcccagc agtaccagca
     2461 gcaccaccag caacaggatc ataaacagct cacgcagcga catccctggc agttcctggc
     2521 tggcaatctg gcttttcgct ttaccgaagt aagcgcgatg caacatcgcc agcgaataaa
     2581 cagatgcaaa gaccagccca aaggtagaga taacggtaat caccgggaca acctggaagc
     2641 tgccgaacag aatcataaat tcgccgacga agttaccggt gccaggcatc ccaagcgttg
     2701 ccaccgcaaa gaacagcgac aatgctggca gccatttcat cttgctccac agaccgccca
     2761 tcatgcgcat gtcgcgggta tggatacgtt cataaagctg accacaaaga ataaacagac
     2821 ccgccgccga caaaccgtgc gcaatcatct ggattaccgc gccctggtag gccaactggc
     2881 tgccggtgta gatagcaatc agcacgaagc ccatgtggga aaccgaggtg taggcgatca
     2941 gacgtttgat atcggtctgg gcgaaggcca tccacgcacc gtagaagatg ccgataacac
     3001 ccagccacat agcaattggc gcgaactctg ccgacgcgtt cgggaacagc ggcagggaga
     3061 aacgcagcaa accgtaagcg gcagttttca gcaagatccc cgcgaggtca acggaaccgg
     3121 cggtcggagc ctgggagtgc gcatccggca gccagccatg cagcggaacc accggcattt
     3181 tgactgcgaa ggcgatgaag aagcccagca ttaacaggta ttccacatca ctggacattg
     3241 gcgtattcag cagctcttca tagttgaagg tccagacgcc ggtcgcattg tagtgaacaa
     3301 aaaccagcgc caggatggca atcaacatca ccaggccact cgcctgggtg taaatgaaga
     3361 acttggttgc cgccgtgata cgcgttttac cgtcagaggc tttatgcccc cacagtgcga
     3421 tcaggaagta catcggcacc agcatcattt cccagaagaa gaagaacagg aacatgtcga
     3481 tggcaaggaa cacgccgata acgccgccca ggatccacat caggttgagg tggaagaagc
     3541 cctgatattt ttcgatctct ttccacgaac agagtaccgc cagcacaccg agcagaccgg
     3601 tcagcacgac catcagcagc gacagaccgt caatggcgag atgaatagag ataccaaaac
     3661 gcgggatcca cggcatgtcg aattcagact gccactgcgg aattccggca gattgcgtca
     3721 gtgaataacc gccctgcaac cacagttgca gcgacagcgc cagcgtcaat cccatggtga
     3781 tcagcgcgat ccagcgtggc accttgacgt caaagcgttc ggtctgccag cacaggaagc
     3841 cgccaataaa gggaattaat attagccagg gtagtaacat ggcgatcttt attccttgta
     3901 aaagtcccgt caggaccgga ttttcaacga attctcacga cagaaaattc tcttcggact
     3961 gggggtagtg tcggatgcgc cgcgaaggca gcttatccga cctacgttct tatatgccca
     4021 ggggcaatcc cacaatcctt aactcaacgc agtaccatca acagtgccag caccacgacc
     4081 gcaccgatgc tcatggatgc cacataccag cgcagataac cgttctcgct taacagcagg
     4141 cctttacctg caaagcggga aagaaccgcc ggaatgttca tcattgagtt cagcggatcg
     4201 cgtttcagca accaggcaat acccaggaac ggcttgacga acactttgtc gtacagccag
     4261 tcaaagcccc aggcgttgta ccaccaggtg cccagcagac ggcccggcgc actgttggca
     4321 atggaggtca ccagagtacg tttaccctgc cacagccagg ctgccagcag aataccgacc
     4381 accgcgacca cgccagaggt aatttccagg gtcaacatgc tgccgtgcgc cagttccgtc
     4441 gtttgcggaa gcacgctctg cagcggcggt acaatcagtg cgccaacgaa ggtggaaagg
     4501 atcagcagca caatcagcgg caggctgtga gttacccctt tcacggcgtg agcgtgaatt
     4561 tgttcttttc cgtggaagac gatgaaaatc atacggaagg tgtagagcga ggtcataaac
     4621 gcaccgacca gacctgccac catcagattg atatgaccat tcgccatcgc acccgcgagg
     4681 atctcatcct tactgaagaa gcccgcagtg accagcggta gtgccgacag tgctgcgccg
     4741 cccaccagga agcagaaata aaccagcgga atagatttac gcagaccgcc catcttgaag
     4801 atgttctgtt cgtgatggca ggccagaatg acggaaccgg atgccaggaa cagcagcgct
     4861 ttaaagaacg cgtgagtcat caagtggaaa atcgccgcat cccatgcctg cacgccaagc
     4921 gcgaggaaca tgtagccaat ctggctcatg gtagagtaag cgagaacacg tttgatgtcg
     4981 gtctgtacca gcgcggcaaa accggccagc agcagcgtaa ccgccccgac aatgcccacc
     5041 agatgcagaa tttccggcgt catcaggaac aggccgtggg tacgggcgat caggtagaca
     5101 cccgcggtta ccatggttgc ggcgtggatc agcgcggaga caggcgtcgg gcccgccatc
     5161 gcgtcggcaa gccatgtctg caacggcaac tgcgcagatt taccgaccgc accgcccagc
     5221 agcatcagcg tcgcccacat cagcatgtta ttgccgtcag caaagtgcgc tggtgccagt
     5281 tccaccattt cgcggaagtt cagggtgccc agttcgttgt aaagaatgaa cagcgcgaaa
     5341 gcgaggaaca cgtcacccac acgggtcacg acgaacgctt tcattgccgc tgcgccattc
     5401 ttcggatcgg tgtaatagaa cccgatcagc agataggagc acaggcccac gccttcccag
     5461 ccgaggtaca tcagcagcag gttatcggcg agaaccagaa ctaccatgct ggcgatgaac
     5521 aggttggtgt aggcgaagaa gcgagagtag ccctcttcac cgcgcatgta ccaggaggcg
     5581 tacatgtgaa taaggaaacc cacaccagtg accaccgaga gcatggtcag cgacaggccg
     5641 tccagcacca ggttaaaacc gatgttaaag tcgcctaccg acatccacgt ccacagcggc
     5701 tggctgtatg cctgctcgcc gttagcgaag aaatcaacgc cgataaaggc ggttaccagc
     5761 gccgccaggc ccacagagcc aacgccgacg atcgccgaaa cgttttcaga ccagcgccca
     5821 cgggagaacg ccagcaggac gaagccaatc aatggcaaaa taatggtgaa ggcaagcatg
     5881 ttcatccgcg catctcactt actgaatcga tgttcaggtt ctggcgacga cggtgaagtt
     5941 gcagcagcag cgcaaggccg atactcgctt ctgccgccgc gaggctgatg gcgagaatgt
     6001 acatcacctg accgtcggtc tgaccccagt agcttccggc gaccacaaag gccagcgcgg
     6061 aggcgttaat catgatttcc agaccaatca gcataaacag cagattgcga cggataacca
     6121 gaccggttaa gccaagaacg aataagattg ccgagaggat caatccatgt tgtaagggga
     6181 tcatgcgtgc tcctccgttt ttcttttcgc gctgtcgtct ttacgattgc tcagcacttc
     6241 acccgcacgc tcttcacgac cgacgtggaa ggccacaacc agacccgcga gcagcagcat
     6301 agaagccagt tccaccgcca gtacgtaagg cccgaacagc gtaataccca ctgctttagc
     6361 actgattggc gtaccgtcga taccctgatc attaacacca aggatggcgt aaacaatcac
     6421 caccagcatg atggccgaca aaattgccgg accaatccac acctgcggtt tcagccactg
     6481 gcgttcctgt tcgatttctg aaccgcccag gttgagcatc atcaccacga acacgaacag
     6541 caccataatg gcacccgcgt agacgataat ttccagcgca ccggcgaagt aagcgcccag
     6601 tgagaagaac accccggaaa tcgccagcag cgaaataatc aggtacagca gtgcgtgtac
     6661 cggattggta tgggtgatca ctcgcaaggt cgcaagtatg gctatcaggc cacagatata
     6721 aaaagcgaac tccattgccc ctctccttac ggtaacaggc tcttgacgtc gataggcttg
     6781 gcttcgttct ctgcttcgcc cttatctttg ccgtcgattg ccatacctgc catccggtag
     6841 aagttatatt ccgggtattt gcccggaccg gagatcagca gatcctcttt ttcgtaaacc
     6901 agatcctggc gcttgtattc ccccatttcg aaatccgggg ttaactgaat cgccgtggtc
     6961 ggacaggctt cttcgcacag accacagaaa atgcagcgtg agaagttgat gcggaaaaat
     7021 tccgggtacc agcgaccgtc tttggtttct gctttttgca gcgagataca gccgaccggg
     7081 caggctaccg cgcagaggtt acaggctacg caacgctctt cgccgtccgg gtcgcgggtc
     7141 agaacgatac gaccacgata acggggcggc agatagaccg gctcttccgg gtacattcgc
     7201 gtttcgcgtt tggcgaacgc gtgcaggccg atcatccaga tactacgaac ctgggtgccg
     7261 aaacctacta acaattcttt taaggtcatg gtcttattgc cccttattgc gcctgccaga
     7321 gaatgacagc cgccgttacc agcaagttga tcagcgtcag cggcaggcag attttccagc
     7381 cgaaggacat tacctggtca taacgcggac gcggtaacga cgcacgaatc aaaatgaaca
     7441 tcatcataaa gaacgcggtt ttcagcgcga accagatgaa tggcggtaac aacgggcctt
     7501 gccagccacc gaagaacagc gtcaccatca atgcagagat ggtcacaatc ccgatgtact
     7561 cacccacgaa gaacagaccg aacttcatac cggaatattc aatgtggtaa ccatccgcca
     7621 gttcctgctc ggcttccggc tggtcaaacg ggtgacggtg acataccgcc acgcccgcga
     7681 tggcaaaggt aataaaacca aagaattgcg ggataacgtt ccacacatgc gcctggctgt
     7741 tgacgatgtc ggtcatgttg aatgaaccgg cctgcgccac cacgcccatc agggaaagcc
     7801 cgaggaacac ttcgtagctc agggtctgcg cagaagcacg catcgcaccc agcaacgagt
     7861 atttgttgtt acttgaccag cccgcaaaca gcaccgcgta aaccgccaga cctgccatca
     7921 tcaggaagaa caaaatcccg atgttcaggt cggcaaccac ccaacccgga ctgactggca
     7981 caatcgcaaa ggccagcagc agcgaggtaa aggcaatcat cggtgccagg gtaaagatga
     8041 cgcgatccga gaatttcggg atccagtctt ctttaaagaa cattttgatc atgtccgcaa
     8101 ccagctggag cgaaccgccc cagccaacac ggttaggtcc ataacggttc tggaacagac
     8161 ccagcaggcg acgttcgcca aagctcatga atgccccaca ggtgacaacc accagcagga
     8221 tcaccaccgc tttgaggatg gtcagcagga tctcaatcag ttccggtgat atccaactca
     8281 ttgttgtgcc tccttgagat cctcaagatg cgcgccagcc agcaccggag caatgccgga
     8341 catacccatc ggcaagccca cctgccctgc cgtcagtcct tcggcgattt caaccggcag
     8401 cgtgaccgtg ttgccatcgt aactaaagga gacgcgtgta cctgcgttca cacccaactt
     8461 cgcggcatcc gctgggttga gtttgatgta cggctgcggc atacggctct ggaagaccgg
     8521 agcacgctgt gacaattcat cgctgccaaa caggtggtaa tacggcgcaa tacgccattt
     8581 cccgtcctgc ggctggaagc gtgccggtac gctggtgaag taatccagac cattctcgct
     8641 ggtttcaaac agacgcacgc ccggatcgcc aaagcgcagt ttgccgccca cttcgtcctg
     8701 gaatttgttc cacgcctgcg gggagttcca gcccggtgcc caggcaaacg gcacttgcga
     8761 acggtgcgcg gtcggctggt tgttaccttc catcgagaag gtgaacatgg tgtcaatatc
     8821 ctgcggctga cgcggctcat gaacgctgat attggcgcgc atggcggtac gaccgctgta
     8881 acggtgcggt tcacgggcca gtttctgccc acgaatacgg aatgtcgcat ccggcgcagc
     8941 atctttgata cctgccagtt ccgggatttt cgccacaaca gcgtcaatca catggtcgag
     9001 ctgcgtccag tccacttcac ggctcagcag ggtgctgtgc agcgagtgca gccagcgcca
     9061 gctttccagc atgacagttt tgctgtcgta ataagccgga tcgtaaacct ggaagaaacg
     9121 ttgggcgcga ccttcattat taattaccgt accgtcgctt tcagcaaagc tggcggcgga
     9181 aagtaccaga tgggcgtttt ccatgatcgc tgtacgctga tggtcaacca ccatcaccag
     9241 cggtgcttta gccagcgcag cattcacgcg ggtagcagaa gcgtgacgat gcagatcgtt
     9301 ttccaacacc accaccgcgt cggcgcgtcc ggtttccagt tcggttaacg cttcttcaag
     9361 cgaacctcca cccataatgc ccagccccat gctgttgacg gaacgggcaa tcatggtgat
     9421 accgacgtca gcgccgcgac ctttcagggc tttcgcgacg ttagccgccg cctgaatcac
     9481 ctctaagcta ccggcgttcg tcccggagat aatcaacggt ttcttcgcac ctgccagtgc
     9541 ctgcacgatg acgtcgattt tgctttgcag ctcaggttcg ataccgtcaa ccgctggtgc
     9601 agagttatcc agcgcatggg cgatggcaaa acctaaacgc gcctgatctt caaccggtgc
     9661 gcggtaagtc cacgccgcga tatcatccag acgggtgtca tcaacgttgg taacaaacag
     9721 cggatgcttc gcacgttgac cgatgttaag gattgccgca atctgccagt cagccacttt
     9781 ctgtgctgcc gccatttcgc gcgctttacc tttcaccgcc tgacgcactg ccagcgcgac
     9841 gcgcgcgccg gtctgggtaa cgtcttcgcc cagcaccagt accgcatcgt aagattcgat
     9901 ttcgcgcaga gccggagtat aaatgccgcc ttcacgcagc actttcagcg ccagttgcag
     9961 acgttcctgc tcaccgtgag cgataccggt gtagaagttt tcttcgccca ccagttcacg
    10021 cagtgcaaag ttgctttcca cgctggcacg cggagaacca ataccgatca ctttcttcga
    10081 ctgacgcaga atatctgccg cgccctgcat tgcctgttcg gcgttgaggg taatgaaatc
    10141 atcgccacga cgctgtactg gctgacgcgg acgatccttc aggttgacgt aaccgtaacc
    10201 gaaacgacca cggtcgcaga ggaagtagtg gtttaccgta ccgttgtaac ggttttcgat
    10261 acgacgcagt tcgccgtaac gttcaccggg gctgatgtta cagccgatgg aacattgctg
    10321 gcagatgctc ggcgcaaact gcatatccca tttacggttg taacgctcgg agtgcgtttt
    10381 gtcggtaaat acgccggtcg ggcaaatttc gaccaggtta ccggaaaatt cgctttccag
    10441 cgtgccgtct tccgggcgac cgaagtagac gttgtcgtgc gcgccataaa cgcccagatc
    10501 tgtaccgtca gcgtaatctt tgtagtaacg cacacagcga tagcaggcga tgcagcggtt
    10561 catttcgtga gagatgaatg gccccaaatc ctgattacgg tgggtacgtt tggtgaaacg
    10621 gtagcgacgg aagctgtgtc cggtcatcac ggtcatatcc tgaagatggc agttaccgcc
    10681 ttcttcacat accggacagt cgtgcgggtg gttggtcatt aaccactcga ccacactttc
    10741 acggaactgt ttcgcttctt cgtcgtcaat ggaaataaag gtgccatcgg aagccggtgt
    10801 catacaggac atcaccaggc gaccacgcgt gtcttccgcg ttttggtatt gcttcaccgc
    10861 acactggcgg caagcaccga cgcttcccag cgccggatgc cagcaaaagt aaggaatatc
    10921 aaggcccaga gacagacaag cttccagcag gttgtccgct ccgttgacct cgtattcttt
    10981 gccgtctaca tgaattgtag ccattagcat gcttccagtt ttctcggtca gggaccgagc
    11041 gttaatcgaa attcggttac cagcgctctt tcagcaggtt cggctgaatc ccattaatca
    11101 aatgggtatt gctgaacggc tgtttgattc ccgcctcaaa ttcttcgcgg aaatatttga
    11161 tggcgctctg taacggctcc actgcaccag gtgcgtgggc acagaaagtt ttacccgggc
    11221 ctaagaatcg acacagttgc tcaagtgttt cgatatcgcc cggctggcct tcgccacgct
    11281 ccagcgcacg cagaattttc acgctccacg gcagaccgtc gcggcacggc gtacaccagc
    11341 cgcaggactc acgggcgaaa aactcttcca ggttacgcac cagcgacacc atgttgatct
    11401 catggtcaac cgccatcgcc agcgccgtac ccagacggct gcccgcttta ccgatacttt
    11461 cgaattccat cggcagatca aggtgcgctt cggtcaggaa gtcagtcccc gcgccgcctg
    11521 gctgccaggc tttaaatttc agaccatcac gcataccacc ggcgtaatct tcgaggatct
    11581 cgcgtgcggt ggtgccgaac ggcagttccc acagtcccgg atttttcacc cgaccggaga
    11641 agcccatcag cttggtgcca gcatctttac ttttcgagat gttctgatac cactccacgc
    11701 cgttagcgag gatcgccgga acgttacaca gggtttcgac gttgttgaca caggtcggtt
    11761 tgccccatac gccggaggtt gccgggaagg ggggtttcga gcgtgggtta gcacgacgcc
    11821 cttccaggga gttgattaac gctgtttctt ccccgcagat gtagcgccct gccccggtat
    11881 ggacgaacag ttcgaagtcg aaacctgttc ccataatgtt tttgccaagc aagcccgctt
    11941 cagtggcttc ggcaatggcg cggcgcagat ttactgccgc ttcgatatat tcgccacgca
    12001 ggaagatgta gccacggtaa gctttcagcg caaacgcgga gatgagcata ccttccacca
    12061 gcaggtgcgg cagttgctcc atcaacaggc ggtctttata ggtgcccggc tccatttcat
    12121 cggcgttaca cagcaggtaa cggatgttca tggattcgtc tttcggcatc aggctccact
    12181 tcaggccagt cgaaaagccc gctccgccgc gccctttcag accagcgtct tttacctgat
    12241 taacgatttc gtccggagac agcccggtca gcgccttacg cgccccttcg taaccgtttt
    12301 tgctgcggta ttcgtccagc cacactggct gtttgtcatc gcgcagacgc caggtcagcg
    12361 gatgcgtttc gggagtacgg ataatgtttt tcatttatac cgctccagca gttcagggat
    12421 cgcttccggg gtcagatgcg cgtgagtgtc ctcatcgatc atcatgtttg gccctttatc
    12481 acagttcccc aggcagcaag ttggcagcag cgtaaagcgg ccatcaaatg tcgtttgccc
    12541 tggtttgatg ttcagctttt tctcgagcgc cgcctgaata ccctgatacc cgttgatatg
    12601 acagaccacg ctgtcgcaat aacggatcac atggcgacca accggctggc ggaagatctg
    12661 actgtagaac gttgccacac cttcgacgtc gcttgccgga atacccagca catcggcgat
    12721 cgcgtggatc gcaccatccg gcacccagcc tcgctgcttc tgaacgattt tcagcgcttc
    12781 aatggacgcc gcacgcgggt cttcgtagtg gtgcatctcg tgctcaatcg cttcacgctc
    12841 tgccgcactc agctcaaaag cctcggtttg tggttgttga ttctcgtgca taattagcgg
    12901 tccacatctg acataacaaa atcgatactg cccagataaa caatcaggtc agacaccagg
    12961 ctgccgcgga tcgccgccgg aatttgctgc aaatgcgcat aactcggcgt gcggatacga
    13021 gtgcgataac tcatggtgct accgtcgctg gtcaggtagt aactgttgat ccccttggtc
    13081 gcctcaatca tctggaaaga ttcattggca ggcatcaccg gcccccacga cacttgcagg
    13141 aagtgggtga tcagggtttc gatatgttgc agcgtgcgct ctttcggcgg cggcgtggtc
    13201 agcgggtgat ccgctttgaa cgggccttcc ggcatgttgt tgaggcactg ctcaagaatg
    13261 cgcagactct ggcgcagctc ttccactttc agcattacgc gggtgtagca gtcagaaaca
    13321 ccaccaccaa ccgggatttc aaagtcgaag ttttcatagc cagaataagg acgcgcctta
    13381 cgcacgtcga agtcgatccc ggtagcacgc aggcccgcgc cagtggtgcc ccactccagc
    13441 gcctctttcg cgccataggc ggcaacgccc tgggaacgac ctttcagaat ggtattttgc
    13501 agcgccgctt tctcgtaaga cgccagacgt ttcggcatcc agtcgaggaa ctcacgcagc
    13561 aggcgatccc agccgcgcgg caggtcgtgc gctacgccgc caatacggaa ccacgccggg
    13621 tgcatacgga aacccgtgat cgcttccacc agatcgtaaa ttttctgacg atcggtaaag
    13681 gcgaagaaca cgggcgtcat tgcgccgacg tcctgaataa aggtcgagat gtacagcagg
    13741 tggctgttga tacggaacag ttcggagagc ataacgcgaa tgacgttaac gcgatccggc
    13801 acggtgatcc cggccagttt ctctaccgcc agcacgtaag gcatttcgtt aacgcagccg
    13861 ccgaggtatt caatacggtc ggtatacgga atgtagctgt gccaggactg gcgctcgccc
    13921 attttctccg caccacggtg gtggtagccg atgtctggta cgcagtcgac aatctcttcg
    13981 ccgtcgagtt gtaaaacgat acggaaagcc ccgtgcgccg acgggtggtt cggaccgagg
    14041 ttgaggaaca tgaagtcctc gttttcggtg ccgcgcttca tcccccactc ttccggtttg
    14101 aaggtcaggg cttccatctc cagatcctgt ttggctttgg tcagctcaaa cggcgagaat
    14161 tcggtagcgc gcgccgggta atctttacgc agcgggtgac ctttccaggt ttgcggcatc
    14221 atgatgcggc gcaggttcgg gtgaccgtcg aaagtaatgc caaacagatc ccaggtttca
    14281 cgctcatacc agttagcgtt cgggaacagt ttggtgaagg tcggtacgtg caggtcgttt
    14341 tctgccagcg ccaccttcag catgatgtcg cggttacgat cgatagaaat cagatggtag
    14401 aaaacggaaa aatccgcggc aggtaaccct tcgcggtgtg tgcgcagacg ttcgtccatg
    14461 ccgtgtaagt caaacagcat gacgtaaggt ttcggcagtt tctttaagaa atcgccaact
    14521 tccagtaatt gttcacgctt gatccacaca acgggaaccc cggtgcgagt cgcctgaaca
    14581 gtaaaggcat ccggcccaaa acggttgcgc agttcgccaa ttaccggatc atcaagatga
    14641 tcgcgggtct gccaggcggg ttcttgcgcg gttaagtcgg tcatattgtt caccattgca
    14701 aatggtccgt ggtgactgtc ggcgcagtaa gcttcgcgaa atagatttag gaataagcga
    14761 agaaaaatcc ctttgccgac aggcgcaaat taaatctcgt caggtgtacg caggttggtt
    14821 acggcaatgc gttcaccgcg cttgcgttcg cgctctgatt gcatattggc gcgataaacg
    14881 ccctgatcgc caaccaccca ggagagcgga cgacgttctt tgccgataga ttcctgcaac
    14941 agcatcagtg cctgcatgta cgcttcagga cgcggcgggc agcccgggat atacacatca
    15001 accgggatga atttatcgac gccctgcaca acggaataaa tatcgtacat accaccagag
    15061 ttggcacagg cacccattga gataacccat tttggttcca gcatctggtc atacagacgc
    15121 tgaataaccg gtgccatttt ggtaaagcag gttcctgcaa ccaccatcag gtcagcctga
    15181 cgcggcgaag cacgcaatac ttctgcgcca aaacgcgcca cgtcatgcac cgcggtaaac
    15241 gaagtcacca tctcaacgta acagcaggaa agaccgaagt tatacggcca aattgagttt
    15301 ttacgacccc agttaaccat gtcattgagc ttgcccataa acacgttttt gttaacttct
    15361 tgctccagag ggtcggttac gatctcctgc ttttgcaggg ggtaacggtc gttctcaccg
    15421 ttgggatcta tgcgggtgag cgtataatcc atcttaatgc ctcgcggtta gcgttgacga
    15481 ttagcgatac tgttcgtttc cgggttcata cgctcgcggc gtgaacgcgc gggcgtccag
    15541 tccagcgcgc caatacgcac cagataaacc agacctgcca gtaacacaaa aataaaaatt
    15601 gcagcttcca caaagcctac ccagccgctt tcgcggatag aggttgacca tgcgaacaga
    15661 tacagcgctt caacgtcgaa gataacgaag aacatggcca ccagataaaa cttggcggac
    15721 aggcgtaagc gggcggagcc gaccgagtcg ataccggatt caaacggcac gtttttcgac
    15781 ctcgcgcgtg cgcgaccgcc taaaaaccaa ccgcctacca gcattaggca acacaggcca
    15841 atggcaacga taagaaagat agcgaatgcc cagtgatgag cgatgacttc agtggatgtt
    15901 gacatactca ttgcttactc atcaaaagta gcgccagatt cactgctctt cacagcagat
    15961 ggacgccaca tcgattcatg gggaggaata aaaaaaacct tacaatcact gtagaaattc
    16021 ttttatacag ctaattgatg tggtctttta ctcctttcta taaccttttg tcaactttaa
    16081 caaaagtttc ttcatattag tttacataat atcaacacca ttagcattta atgccctttc
    16141 accccagatc cttgacgact ccaggataat tagatgttgt tgaatcgtgt ccgttgtgaa
    16201 gcaatggaaa aaatacgggt ctattttgac aggaatttgt gtcgattcct ccccccaaaa
    16261 gagagtattt tcttgatctg tgacacgctt ttgtcattcc ataacaaaaa cgcagcaaca
    16321 aatttacgta ttttttaaca tcattgtagc aggtgatttt tttcaggcga ttatttgtgc
    16381 gttcgggacg tgaatctctg gtgattgaaa aatgaacagc tttgtacgtt ctgcactatg
    16441 cgaggaagga tttttactaa aaaaaagccg ctggggttta aaacaccccc agcggctcgt
    16501 tttttacact attgtctcag gaattatcta tcgtccgtcg attactcgat atccctttca
    16561 atcaacaatg aatcatcccc ttccggagca gacattgggc tgtattgcca cggattatgg
    16621 tagctctcca tcgcctgata gatcacctgg gccagctcat tattactgga cgggtcatag
    16681 cacagcaaat attcggtatc aggtagcggc ggtaagccat ctactccact cagcacacgc
    16741 aggtccgggc tcatcatctc aaccggcctt gccgtcacgc caagaccggc tttcactgcc
    16801 gcacgaacgg ccggaagcgt cgaggcgaca taagccagtc gccatggaat atctgcttta
    16861 ttaagcgttg ccagcaccat atcgcgaaac ggacttggat catccagcaa tacaagaggg
    16921 atcggctcgc ctttttgcaa tacgtattcc gctgcgcagt accagtgtgt tggcgaggta
    16981 cgcaggttca atgccttaaa cgctgaagga cgatgggtgg ttaccatcaa atccacttcc
    17041 tgggattcca gcatttctgc catataggca ttacgtttaa cgcggacatc cagcgctaat
    17101 ttcggataaa ccgaactcac gcgatttaac aggaaaggta agatcgtatc ggcagattca
    17161 tctgaagcac cgatagttaa cacgccctga agattactga acattaatga tgagcaggcc
    17221 tcatcattaa aacgcaggat tttcctggcg taaccaagaa gttgaatgcc atgttcagtt
    17281 aacagtttgt tgcgaccgtg acgagcgaac agttctttcc caacgagttg ttccagacgc
    17341 tgcatttgct gacttacggc ggactgagta cgacacacag cggcagctgc ggcagcaaaa
    17401 gtgttcagat cggcaacagc aacaaatgtt ctcagcagat cgaggtcgag gttaattatc
    17461 ggacgatttg cacttatcat atattatcac ttactggcgg ctcatactga gctggttaat
    17521 gctgtgcaca cacaaacaag caattccatt tgtaatgtgc ctccctggca gtttcatccg
    17581 gaacccggac gaaagtaaaa atgcatatga gttgcactaa aaaagcgact cacattgttc
    17641 cgttataatg cctgaagtag atcacagaat atatcttcag ggatcgcata tctattaagt
    17701 tactcactct tttctattta tgacatgcgc gtgtttgtat aaatgtaaat gtgagtcctt
    17761 gttccactct cgtgcagcat cgctggtcat acgcgaacac gtacaaacag caatggtgag
    17821 gcggcatcaa gagcagggat ccgtcattta tgcgagcatt ttaccccaaa aaccttttat
    17881 ttataagggc cattgcgaat catctgatgc aaagttatgt tatgttaggc aaagtaatct
    17941 tctattatta ataagcacat caaaaccttt ttgaatatta aataataatt aattagcatc
    18001 atcctcattc attaattccg cttaacaata gtttcacacc ttgcccccat tacgacacct
    18061 cggaaatcat cacgctgtta aactctccgt aatgcggaaa tatcatcatc gcgtttcatt
    18121 agtgaattct taaatgaggc attttcacac aattatctta cagataaaaa aaccagactt
    18181 acaattaaga atcagaataa ttcactatat aacattgcat gtaaagcata tacacctcgt
    18241 tattttgtca ttatcaagtt attaacagca caatcgagcc ttcccctctg gcaaaatctt
    18301 attctgcaga ccttcaaaac accgtcctgg gggagtacat tgttctaagc tgacttccac
    18361 ggcagggagt ggcgataaca gcaaaaaagg tcaagattca tgtcccccat tgaaaaatcc
    18421 agcaaattag agaatgtctg ttatgacatc cgtggtccgg tgctgaaaga agcaaaacgc
    18481 ctggaagaag aaggtaacaa ggtactgaaa ctgaacatcg gcaacccagc cccgttcggt
    18541 tttgacgcgc cagatgaaat cctcgttgac gtgatacgca acctgcctac cgctcaaggg
    18601 tattgcgatt ccaaaggtct ttactccgcg cgtaaagcca tcatgcagca ctaccaggct
    18661 cgtggcatgc gtgatgttac cgtggaagat atttacatcg gcaatggtgt atcggagctt
    18721 atcgttcagg caatgcaggc attgctgaac agcggggacg aaatgttggt tcctgcacca
    18781 gattacccac tatggaccgc ggcggtttcg ctttccagcg gtaaagcggt gcattatctt
    18841 tgcgatgaat cctctgactg gttcccggac ctcgatgata ttcgcgctaa aattacgcct
    18901 cgtacgcgtg ggatcgttat tatcaaccca aataacccaa ccggcgcggt atattccaaa
    18961 gagcttttaa tggagattgt ggagattgca cgtcagcata atctcattat cttcgccgat
    19021 gaaatttatg acaaaattct ttacgacgac gctgagcatc actcaattgc gccgctggca
    19081 cctgacctgc tgaccattac ctttaacgga ctgtcgaaaa cgtaccgcgt tgcaggcttc
    19141 cgtcaggggt ggatggtgtt gaacgggccg aaaaaacacg ccaaaggcta catcgaaggt
    19201 ctggaaatgc tggcttcaat gcgcctgtgt gctaacgttc ctgcgcaaca cgccattcag
    19261 accgcgctgg gtggttatca gagcatcagt gaatttatta cccctggagg tcgtctttat
    19321 gagcagcgta accgcgcgtg ggaactgatc aacgatattc cgggcgtttc ctgcgtgaaa
    19381 cctcgtggtg cgctgtatat gttcccgaaa atcgacgcca aacgctttaa cattcacgac
    19441 gatcagaaaa tggtgctgga tttcctgttg caggaaaaag ttctgttggt gcaagggacg
    19501 gcattcaact ggccgtggcc ggatcacttc cgcattgtca cgctaccgcg tgtcgatgat
    19561 atcgagctgt ctttgagcaa gttcgcgcgt ttcctttctg gttatcatca gctgtaatct
    19621 taatttcact gccggagatt gcatccggca gcgttatccc gccacaatga cctgatgatg
    19681 tcatcatacg taaggtcact atgaaacaga gccatttttt tgcccatctc tcccgcctga
    19741 aactcattaa ccgctggccg ctaatgcgca acgtgctgac ggaaaatgtg tccgaacaca
    19801 gtttgcaggt agcgatggtc gcccatgcgc tggcagctat caaaaatcga aaatttggcg
    19861 gtaatgtcaa cgccgaacgt atcgctttac tggcgatgta ccacgatgcc tcagaagtgc
    19921 tcaccggcga tctccctact ccggtgaaat acttcaattc gcaaatcgct caggagtaca
    19981 aggctattga aaaaatcgct cagcaaaaac tggtcgatat ggttccggaa gagctgcggg
    20041 atatctttgc gccgttaatt gacgagcatg catatagcga tgaagaaaaa tcgctggtga
    20101 aacaggcaga tgcactgtgt gcatatctga aatgtctgga agaactcgcg gccggaaata
    20161 atgaattctt gctggcaaaa acgcgactgg aagcgacgct tgaagcgcgt cgcagccagg
    20221 agatggacta cttcatggaa gtatttgttc ccagcttcca tctttcgctc gatgagatta
    20281 gccaggattc accgctgtaa gcagccggag tctgcgtcgc atcaggcaat aagcgccgga
    20341 tgcgacatca ggctcttgtc aaaacggaaa cagcatcggg atcatcacca cacaaaccgc
    20401 catcacgata atggtgaacg gtacccccaa cttcacaaag tcactgaagc tgtaatttcc
    20461 cggacctaaa accagtgtgt taacaggtga agaaaccggt gtcataaagg cggcggatgc
    20521 tgccatcgcc acgaccatcg cgaatggata aggcgacacc cccatcgttt tggcagcagc
    20581 cagcgcaatc ggagccatca acaccgccgt cgcggtatta gagataaata gcccaataac
    20641 cgccgacaag acaaacaaac accccagcat catatgtggc ccgtaaccac cgccaatgtc
    20701 catcagccct ttcaccgcca gcgcgacacc tcccgttttc tgtaatgcca cagcaaacgg
    20761 catcatccca acgatcaaaa taatgctcgg ccagtgaatg gatttatagg cgctttcagc
    20821 atctatacag cggaatttcc ccatcagcag gcaggcgatg atagcggcaa caggattagg
    20881 aatttcatct gtcagcatta acgccaccat tagcaccaga cagaaaatgg catggggtgc
    20941 ctggctgtgc gcgggcgatg cttcactcac ctcttccggt aagttcagcg ctacgaagtc
    21001 gcggccctgt ttggccagca taccgatcag tttccagtta cccacaacca ggatgatatc
    21061 gcccagcagc agaggctcat ccgccagcga accttccagc gccacgccat tgcgctttag
    21121 ccccaccaca ttcagtccgt agcgggtacg aaaaccaatt tcgcgcaccg atttaccaat
    21181 cagttctgac tcaggaatta atgaaatctc tgccatgccc acatcaaggg cctggtcaga
    21241 aaaatactcg ccgcgcagta ccatcggctc cagcaattgc tcactacaaa attgccggag
    21301 atcgacatca gccgcagaca tatcaataag caaaacgtca cgcgcgcgaa actcagaaac
    21361 cccattaacg ttcacgataa cgcgacgaaa acgccgccag cgttcaacac cgatgacgtt
    21421 agcgccataa cgctcacgta atttgagatc atccagccgt tgaccaatca ttgccgatcc
    21481 ggggcgaata gccagacgtc gcgcacgccc ggtcagtcga tattcacgga taagatcgcg
    21541 aaaggttcga cgcgtccagc cttcgcgctg cggggtctgg gtatcccctt tcagcatgaa
    21601 acgcatcact aacatataca aaatacccag caccagcacg accaggccaa caggtgttac
    21661 gctaaagaaa ctgaagccgt gatagccttc acgcagcaat tcactgttga ctaccaggtt
    21721 cggcggcgtc gccaccagcg tcatcatgcc gctaatcagc ccggcaaaac ttaacggcat
    21781 catcagacgt gacggcgaag tttgcatacg catggcaacg cttaacacca cgggaataaa
    21841 gatagcgaca acgccggttg aactcataaa cgcgccaagc cccgcgacgg tcagcatcaa
    21901 caaaaccaac attttgattt cactgttgcc cgccactttg accagccatg ttcccattac
    21961 ggtggcaaca ccggtacgga ccaaaccatc gccaataata aacaaggcgg caatcaggac
    22021 aacgttagga tcagaaaagc cggaaaatac ttcggggacc gtcagcgttc cgcttaatgc
    22081 aaacgcgaca ataacaaaca aagcgaccgc atccatacgc actctgcccg tcgcaaacaa
    22141 gacgatggca acggccagta atgaaagaac ccaaatcaat tcaccgttca caacttatcc
    22201 ttgttaattg agggggatga cttgattctg ccataaaaaa gccccgacga gacggggcta
    22261 aatcatgatc aggtgtttca ctgaataata acatcgccat ttagctgttt ggtcacagta
    22321 atttgctcca gactgtggag gaccaaatcg acctcattca ggcgcggggt atctgccgga
    22381 gcgttaaccg caatgacatg gcaacccgcc gccaggccag aaagcacgcc agcgggagca
    22441 tcttccgcca ccacacactc ctgcggcgca agccccagca gctgcgcacc taacagatac
    22501 gcatcaggtt ctggttttcc gcgcttcact cgctcagcgg ttacaaacac ctctggtgcg
    22561 ggaagcccag ctattttatg gcgcgctcgc gctaccggca tggagccaga agtcacaatg
    22621 gcccacggaa tacctgcttt attcaaatga ttgagtaagg cgattgcccc cggaagcgcg
    22681 gtaatacctt cggtttccgt ggcctcgatg tgctccagac gcgtaaactc ggcggcaata
    22741 tcagcctcgg atttgcccgc cataaaatgg cgcaaagagg tgatcgcctg tttaccgtga
    22801 atgaaagcca gcacctcttc cggcgctaac ccatgacgtc tggcccagtt gctccacgcc
    22861 cgttctaccg caggcaggga atccaccagc gttccatcaa gatcaaacag aaaacctttg
    22921 caccgcacgc gggcctcctc aggcgttgat aatttgatta atttcgttgg cgctcaaatg
    22981 gtactgacgc gggcaggcat gccacacatt aagcatgcgc tgatattttt cccacattgg
    23041 cgtctgggcg ttaaaaccat gagtcccagc gtcaaaatgg gtatagcgcc cttccacatt
    23101 aaccataaag cggacataac cgaggtaacg tgcttcagtg gcggcgtcaa agccgaggaa
    23161 ggtgacacga cgttcatcga tggattgctg gtcctgcaaa ttagaccagg aaacatgcaa
    23221 cgcatgatac atctccataa tgtcgatgat agtgcggcag gtttcttctt tcagctcgcc
    23281 aaactcgcga tccaattcac gcatctgtaa tccgtaacca cgctcaataa ttgtttgcag
    23341 gcgacggtaa cgttcagcat ttgccggatc gagcatagtc atcatcttgt actgattaga
    23401 caaaataaga cgttgcgcgt tggtcatttc cattgttgac tcctgtatca ctctactacg
    23461 gtgaaaaaaa aagaaggctg agtatgcctt cttttatatg cgtaatcagg ggtcaattac
    23521 aaatcatcaa ggaaagtttt atccagttgt ttgaaggcgc gcttaagcgt gtcagctaat
    23581 gcctggtaat caggcttgcc ttcaacgggt gccaacacct gtccagactc ctgcaattta
    23641 ccgcgaactt cataaaacca gttgaggata gcagggggta atggcgttac agaacgcttg
    23701 cccagccacc ataatccctg catgggtaaa cttaaggcga acagcgcagt ggcaactgcc
    23761 ggcccaagct gaccgcccag ggcaatctgc cagcagagag taaatacggc gatcggcggc
    23821 ataaaacgga tcgcataacg cgtcatcttg ataacgcgat tttcgacaaa gaccggggca
    23881 aggcgttttt ccagcggcca cgtctttgag taatgctgtc cccggcgaaa caagctaaaa
    23941 aaattaacag aacgattatc cggcgttgac atgcttcacc tcaacttcac atataaagat
    24001 tcaaaaattt gtgcaaattc acaactcagc gggacaacat tcaaaacatt ttgtcttcca
    24061 tacccactat caggtatcct ttagcagcct gaaggcctaa gtagtacata ttcattgagt
    24121 cgtcaaattc atatacatta tgccattggc tgaaaattac gcaaaatggc atagactcaa
    24181 gatatttctt ccatcatgca aaaaaaattt gcagtgcatg atgttaatca taaatgtcgg
    24241 tgtcatcatg cgctacgctc tatggctccc tgacgttttt ttagccacgt atcaattata
    24301 ggtacttcca tgtcgagtaa gttagtactg gttctgaact gcggtagttc ttcactgaaa
    24361 tttgccatca tcgatgcagt aaatggtgaa gagtaccttt ctggtttagc cgaatgtttc
    24421 cacctgcccg aagcacgtat caaatggaaa atggacggca ataaacagga agcggcttta
    24481 ggtgcaggcg ccgctcacag cgaagcgctc aactttatcg ttaatactat tctggcacaa
    24541 aaaccagaac tgtctgcgca gctgactgct atcggtcacc gtatcgtaca cggcggcgaa
    24601 aagtatacca gctccgtagt gatcgatgag tctgttattc agggtatcaa agatgcagct
    24661 tcttttgcac cgctacacaa cccggctcac ctgatcggta tcgaagaagc tctgaaatct
    24721 ttcccacagc tgaaagacaa aaacgttgct gtatttgaca ccgcgttcca ccagactatg
    24781 ccggaagagt cttacctcta cgccctgcct tacaacctgt acaaagagca cggcatccgt
    24841 cgttacggcg cgcacggcac cagccacttc tatgtaaccc aggaagcggc aaaaatgctg
    24901 aacaaaccgg tagaagaact gaacatcatc acctgccacc tgggcaacgg tggttccgtt
    24961 tctgctatcc gcaacggtaa atgcgttgac acctctatgg gcctgacccc gctggaaggt
    25021 ctggtcatgg gtacccgttc tggtgatatc gatccggcga tcatcttcca cctgcacgac
    25081 accctgggca tgagcgttga cgcaatcaac aaactgctga ccaaagagtc tggcctgctg
    25141 ggtctgaccg aagtgaccag cgactgccgc tatgttgaag acaactacgc gacgaaagaa
    25201 gacgcgaagc gcgcaatgga cgtttactgc caccgcctgg cgaaatacat cggtgcctac
    25261 actgcgctga tggatggtcg tctggacgct gttgtattca ctggtggtat cggtgaaaat
    25321 gccgcgatgg ttcgtgaact gtctctgggc aaactgggcg tgctgggctt tgaagttgat
    25381 catgaacgca acctggctgc acgtttcggc aaatctggtt tcatcaacaa agaaggtacc
    25441 cgtcctgcgg tggttatccc aaccaacgaa gaactggtta tcgcgcaaga cgcgagccgc
    25501 ctgactgcct gatttcacac cgccagctca gctggcggtg ctgttttgta acccgccaaa
    25561 tcggcggtaa cgaaagagga taaaccgtgt cccgtattat tatgctgatc cctaccggaa
    25621 ccagcgtcgg tctgaccagc gtcagccttg gcgtgatccg tgcaatggaa cgcaaaggcg
    25681 ttcgtctgag cgttttcaaa cctatcgctc agccgcgtac cggtggcgat gcgcccgatc
    25741 agactacgac tatcgtgcgt gcgaactctt ccaccacgac ggccgctgaa ccgctgaaaa
    25801 tgagctacgt tgaaggtctg ctttccagca atcagaaaga tgtgctgatg gaagagatcg
    25861 tcgcaaacta ccacgctaac accaaagacg ctgaagtcgt tctggttgaa ggtctggtcc
    25921 cgacacgtaa gcaccagttt gcccagtctc tgaactacga aatcgctaaa acgctgaatg
    25981 cggaaatcgt cttcgttatg tctcagggca ctgacacccc ggaacagctg aaagagcgta
    26041 tcgaactgac ccgcaacagc ttcggcggtg ccaaaaacac caacatcacc ggcgttatcg
    26101 ttaacaaact gaacgcaccg gttgatgaac agggtcgtac tcgcccggat ctgtccgaga
    26161 ttttcgacga ctcttccaaa gctaaagtaa acaatgttga tccggcgaag ctgcaagaat
    26221 ccagcccgct gccggttctc ggcgctgtgc cgtggagctt tgacctgatc gcgactcgtg
    26281 cgatcgatat ggctcgccac ctgaatgcga ccatcatcaa cgaaggcgac atcaatactc
    26341 gccgcgttaa atccgtcact ttctgcgcac gcagcattcc gcacatgctg gagcacttcc
    26401 gtgccggttc tctgctggtg acttccgcag accgtcctga cgtgctggtc gccgcttgcc
    26461 tggcagccat gaacggcgta gaaatcggtg ccctgctgct gactggcggt tacgaaatgg
    26521 acgcgcgcat ttctaaactg tgcgaacgtg ctttcgctac cggcctgccg gtatttatgg
    26581 tgaacaccaa cacctggcag acctctctga gcctgcagag cttcaacctg gaagttccgg
    26641 ttgacgatca cgaacgtatc gagaaagttc aggaatacgt tgctaactac atcaacgctg
    26701 actggatcga atctctgact gccacttctg agcgcagccg tcgtctgtct ccgcctgcgt
    26761 tccgttatca gctgactgaa cttgcgcgca aagcgggcaa acgtatcgta ctgccggaag
    26821 gtgacgaacc gcgtaccgtt aaagcagccg ctatctgtgc tgaacgtggt atcgcaactt
    26881 gcgtactgct gggtaatccg gcagagatca accgtgttgc agcgtctcag ggtgtagaac
    26941 tgggtgcagg gattgaaatc gttgatccag aagtggttcg cgaaagctat gttggtcgtc
    27001 tggtcgaact gcgtaagaac aaaggcatga ccgaaaccgt tgcccgcgaa cagctggaag
    27061 acaacgtggt gctcggtacg ctgatgctgg aacaggatga agttgatggt ctggtttccg
    27121 gtgctgttca cactaccgca aacaccatcc gtccgccgct gcagctgatc aaaactgcac
    27181 cgggcagctc cctggtatct tccgtgttct tcatgctgct gccggaacag gtttacgttt
    27241 acggtgactg tgcgatcaac ccggatccga ccgctgaaca gctggcagaa atcgcgattc
    27301 agtccgctga ttccgctgcg gccttcggta tcgaaccgcg cgttgctatg ctctcctact
    27361 ccaccggtac ttctggtgca ggtagcgacg tagaaaaagt tcgcgaagca actcgtctgg
    27421 cgcaggaaaa acgtcctgac ctgatgatcg acggtccgct gcagtacgac gctgcggtaa
    27481 tggctgacgt tgcgaaatcc aaagcgccga actctccggt tgcaggtcgc gctaccgtgt
    27541 ttatcttccc ggatctgaac accggtaaca ccacctacaa agcggtacag cgttctgctg
    27601 acctgatctc catcgggccg atgctgcagg gtatgcgcaa gccggttaac gacctgtccc
    27661 gtggcgcact ggttgacgat atcgtctaca ccatcgcgct gactgcgatt cagtctgcac
    27721 agcagcagta atctcgtcat catccgcagc tttgcgctgc ggatatctga accggaaata
    27781 atcactattt ccggtttttt attctcttaa tctgcattaa tcctttctga ttatcttgct
    27841 taactgcgct gcatcaatga attgcgccat ttcactttgc atacttacca ctttgttttg
    27901 tgcaagggaa tatttgcgct atgtccgcaa tcactgaatc caaaccaaca agaagatggg
    27961 caatgcccga tacgttggtg attatctttt ttgttgctat tttaaccagc cttgccacct
    28021 gggtagttcc ggtggggatg tttgacagtc aggaagtgca gtatcaggtt gatggtcaaa
    28081 caaaaacacg caaagtcgta gatccacact catttcgcat tctgactaac gaagcaggcg
    28141 aacctgagta tcaccgcata cagctgttca cgacgggcga tgaacgcccg ggcctgatga
    28201 acttcccgtt tgaaggatta acctcaggat cgaaatacgg gacagctgtt ggcatcatca
    28261 tgtttatgca ggtgattggc ggcgcgtttg gcattgtgat gcgtacagga accattgata
    28321 acggtatcct ggcgcttatt cgccataccc gcgggaatga aattctcttt attcctgcgc
    28381 tgtttattct gttttcactt ggcggcgcgg tatttggtat gggagaagag gccgtcgcct
    28441 ttgccattat catcgcaccg ctaatggtcc ggctgggcta tgacagtatt accaccgtcc
    28501 tggtgaccta tattgccacg caaatcggtt ttgccagttc gtggatgaac ccgttttgtg
    28561 tggtcgttgc tcaggggatt gccggcgttc cggtgctttc tggctccggg ttgcgcatcg
    28621 tggtgtgggt tatcgccact atgattggcc tgatctttac catggtgtac gcctcacgag
    28681 tgaaaaagaa tcctcttctg tcacgcgtgc atgagtccga ccgcttcttt cgtgaaaagc
    28741 aggcggatgt tgaacaacgt ccgtttacct ttggtgactg gctggtattg attgtcctga
    28801 ccgccgtaat ggtctgggtg atttggggcg tgatcgttaa tgcctggttt attccagaaa
    28861 ttgccagcca gttcttcacc atgggtctgg tgattggcat catcggcgtt gttttccgcc
    28921 ttaacggcat gacggttaat accatggctt catcctttac cgaaggggcg cgaatgatga
    28981 tcgcccctgc cctgctggtg ggtttcgcca aagggatttt gctgctggtc ggtaatggtg
    29041 aagcgggtga tgccagcgtg ttaaatacca tcctcaacag cattgccaat gccattagcg
    29101 gtctggacaa cgcggtcgcg gcctggttta tgttgctctt ccaggcggta tttaatttct
    29161 tcgtgacgtc cggttctggt caggcggcgt taaccatgcc gttactggca ccgcttggcg
    29221 atctggtcgg tgttaaccgt caggttaccg tgctggcatt ccagtttggt gatggcttca
    29281 gtcacatcat ttacccaacc tcagcttcgt taatggcaac tctcggtgtg tgcagggtgg
    29341 acttccgtaa ctggctgaag gtgggcgcgc ccctacttgg actgctgttt attatgtcca
    29401 gcgtcgtagt gatcggcgct cagttgatgg gctaccacta aaaatgttaa gagccgcaat
    29461 tgcggctctt ttttcattct gccgtttcag tctctacggc ttcatttttg gcattgcgct
    29521 tcatccacaa cgccagcgct ttcagcgagt ctggagtgaa ctcatcgcag cgtgcggtga
    29581 tttcttccgg cgtcagccag caaacttcac tgacttcatc ttcctgtagg gcgaagggac
    29641 cgtgagagac gcagctgaac aacgcgcccc agacacggca atttttatct tcgaaataga
    29701 actgcccgtg ctcggcaaag gggacaccgg caatgcccaa ctcttcttcc gcttcgcgac
    29761 gcgcggattc cagcagttgc tcatcggcct gaaccacacc gcctgcggtc gcatctaaca
    29821 tgccgggtaa aaagtctttt gtctcggtac gacgctggac cagaattttg cccatgccat
    29881 catgcacgac gatgtaagtt gcacgatgac gcagacactg tgcccgcatt tgttcccggc
    29941 tggcttgtgc aatgacttcg ttctcttcat tgacaatatc cacccattca gtacttgcca
    30001 aacgacgctg ttccattatc aggaaacctt ctttttctgg cgctcttacg gcgcattttg
    30061 agttgtgggt aaattacgga ttaatcgcga cctgcgcaat gatactttga tcattgagtg
    30121 cgattacact aagtacgtca ttatccagca tgccataact cgccggatta ccgcctttcg
    30181 gaatactcac cgagccgggg ttgaagtgga aaatctcccc ccgctgttct gccactggca
    30241 gatgggtatg accgtacacc agcacatcgt tctggtttaa agcaggtaga ttttccgggc
    30301 caaaaagatg accatgcgtc aaaaacagac gttgtttttc cagtaatacc tgttgccacg
    30361 gcgcggttat cgggaaatgc agcagcattt gatccacttc gctgtcgcag ttgccgcgca
    30421 cagcgataac cttatgtgcc acttcattaa gccgttcagc gactttggct ggcgcgtaac
    30481 cctccggtaa agcattacgc gggccgtgat tcaacacgtc gccaaggatc accagccact
    30541 gggcaccgct ttgggcaaac aactccagaa cacgttccgt cgccggtaac gacccatgaa
    30601 tgtccgatgc aaacatcagt ttcatcactc actcctcgtc gaaaaaacgt aagctatgat
    30661 actggattct gtcgttgcta tcagccagat tgcttcgccg aaagtgcaat aaaacgctgg
    30721 acagacgctc gctgccactg gaatgtcgca taatccacca ggcgttctgg cacctcatcg
    30781 ccatgtagta ccaggcggtt aatcattagc gccagatcag tatcagcaat gcaccattca
    30841 ccaaataaat tcggctgacc cagtgctaac aaatgttctg ccatcgcgaa cagtttctct
    30901 gcactggctt ttccctcggc cgttagtggc gcttttttcg cccccgcaaa gacaacatcc
    30961 gtcggacgct cttcgcggat gggcatcaga tcgctgcgca gccaggcctg aatctgtcgt
    31021 gcacgcgcac gattttctaa atcaagcgga taaatacgtt cccaggtcgg tggcgcaaat
    31081 cgatcttcca gatactccgc aatggcagaa gattcactca actcaaaatc atcgatttgt
    31141 aataacggca cacggcgtgt ctgaccgtaa ccttgccacg tcggctgcaa atgttcaccg
    31201 ctgtcgaggt cgatggtctt gatatgaaac gacaggcctt tttcctgcaa cgccacccaa
    31261 gcggataaca cataagggga gaaaaagtgg gcatctgacc aaagcgtgat agcgggttta
    31321 ctcattatgt cctcggcaat aaagggggct ggctatcaaa ctatagagcc tttttgtcac
    31381 tgtcacgtga cgaatactca cgtaagtcgc cgcgctttct atactggtgg tgttcagatg
    31441 attaaacaac cggagctgca atgatcgatc tctatttcgc cccgacaccc aatggtcaca
    31501 aaattacgct gtttctcgaa gaagcagagc ttgattatcg cttgattaag gtagacctgg
    31561 ggaaaggcgg tcagtttcgt ccggaatttt tgcgcatttc gcccaacaac aaaattccgg
    31621 caattgttga tcattctcct gccgatggcg gcgaaccgct aagcctcttt gaatctggtg
    31681 ccattttgtt gtatctggct gagaaaacgg ggctcttttt gagtcatgaa acgcgtgaac
    31741 gcgccgccac attacagtgg ttattctggc aggtaggcgg actggggccg atgcttgggc
    31801 aaaatcatca ttttaatcac gcagcccccc aaaccattcc ttacgctatt gaacgttatc
    31861 aggttgaaac tcagcgtctt taccatgtac taaacaagcg gctggaaaac tcgccctggc
    31921 tgggaggcga gaactacagc attgcggata ttgcctgctg gccgtgggtt aatgcctgga
    31981 ctcgccagcg aattgacctc gcaatgtatc cggcagtcaa gaactggcat gagcggatcc
    32041 gttcgcgccc tgccaccggg caggcactgc taaaagcaca actcggtgat gagcgttcgg
    32101 atagttaaca gaaacaggtt ctcgtgtatt atttcatcct aagtaaaaca acggagaacc
    32161 tgcaatggca caacctgccg ctattattcg tataaagaac cttcgtttac gtacgtttat
    32221 cggaattaag gaagaagaaa ttaacaaccg tcaggatatt gttatcaatg tgacgatcca
    32281 ctaccccgcc gataaagcgc gcactagcga agatatcaac gatgcgctga attatcgcac
    32341 cgtaacgaaa aacattattc agcatgtaga gaataaccgt ttctctttgt tggaaaaatt
    32401 aactcaggat gtgctcgata tcgcacgtga acatcactgg gtgacgtatg ctgaagtgga
    32461 gatcgataaa ctgcacgcgc tgcgctacgc cgattcggta tccatgacct taagctggca
    32521 gcgttaaccg ccatatcggg aggctgcatg aacatagtga tcaccggagg gacgggatta
    32581 attggtcgcc atttgattcc gcgtttgctg gagctgggcc atcaaatcac ggtagtgacg
    32641 cgtaacccac agaaagccag ttccgttctc ggccctcggg tgacgctatg gcaagggcta
    32701 gccgatcaaa gcaacctcaa cggcgttgat gcggtaatca acctggccgg agaaccgatt
    32761 gctgataaac gctggactca cgagcaaaaa gagcgtctct gccaaagccg ctggaatatc
    32821 acgcaaaaac tggtcgattt gattaatgcc agcgacacgc cgccgtcggt actcatttcc
    32881 ggctcggcaa cgggctatta tggcgactta ggtgaagtgg tggttaccga agaggaaccg
    32941 ccgcataacg aatttactca taaactctgc gcccgctggg aagagattgc ctgccgggcg
    33001 caaagtgaca aaacgcgagt gtgcctgctg cgaaccggcg tgctactggc accggacggc
    33061 ggtattctcg gtaaaatgct gccaccgttt cgtcttggcc tgggcgggcc gattgactct
    33121 ggtcggcagt atctggcctg gattcatatt gatgatatgg tcaacggtat tctctggctg
    33181 ctggataacg agctgcgcgg gccatttaat atggtttcgc cctccccggt acgcaatgaa
    33241 caatttgccc atgcgctcgg tcacgcgctg catcgcccgg ccattttgcg cgtccccgcg
    33301 accgccattc gactgttaat gggcgaatct tcagtactgg tattaggtgg acaacgcgcg
    33361 atgcctaaac ggctggaaga agcgggtttt gcgtttcgct ggtacgattt agaagaggcg
    33421 ctggcggatg tcgttcgctg atgtggttta cagcaaacat ccgccagtta actcccggtg
    33481 ttacaggatt agtggctttg cgcgataaga tcgtctggtg aaagtcgggt caccatcata
    33541 actaactctc tgtctaaacc tctatccagc atctcctgag caatacgcag ggcttcttcg
    33601 tgtttgccct gcattgcgcc ttcttcacgt aatctgtcag caatggtcat cagtttctcc
    33661 ttttcttgtg gtgcgcgttc cgctatctca ccaataaatg cacgaaaacg ctgggcatcc
    33721 cctgtttgta atacgtaatt aaacagggct tttagctgtc tgtcattagt gttccctgta
    33781 actagcagcg aaacaatttg gtcgactaat cccaacagat cgcgctgacg aatatgtttc
    33841 tgaattaact ccaacagcgc cattttgcgg tgttgcataa tctcgtcatc cggcaccacg
    33901 gtaatatcca ccaacggaaa cgctgatgaa tatattttgc gggctatagc aggctcggca
    33961 aattcatcaa gccagcagag tgaataagga taaggacttc tgcaaccatg ataaaacagc
    34021 atcgggatca ccaatggaag ctctttatag cccg
//
LOCUS       DAJVUN010000024        32974 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.024, whole genome shotgun sequence.
ACCESSION   DAJVUN010000024 DAJVUN010000000
VERSION     DAJVUN010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32974
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.024"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..128)
                     /gene="ariR"
                     /locus_tag="OQQ76_000903"
                     /pseudo
     CDS             complement(1..128)
                     /gene="ariR"
                     /locus_tag="OQQ76_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415684.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm/acid-resistance regulator AriR"
     gene            complement(157..429)
                     /locus_tag="OQQ76_000904"
     CDS             complement(157..429)
                     /locus_tag="OQQ76_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YmgA"
                     /protein_id="HCS1967489.1"
                     /translation="MKTSDNERIKYEITGQAVLQILRMKINFSLQTLIKQLLVMKSAE
                     EDAFRRDLIDSIIRDFSNSDSGGPNRRTATADNKSMFNGKKINRIH"
     gene            complement(472..708)
                     /locus_tag="OQQ76_000905"
     CDS             complement(472..708)
                     /locus_tag="OQQ76_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component-system connector protein YcgZ"
                     /protein_id="HCS1967490.1"
                     /translation="MHQNSVTLDSAGAITRYFAKANWPTQQETLGEIVTEILKDGRNL
                     SRKSLCAKLLCRLEHATGEEEQKHYNALIGLLFE"
     gene            1022..2233
                     /gene="bluF"
                     /locus_tag="OQQ76_000906"
     CDS             1022..2233
                     /gene="bluF"
                     /locus_tag="OQQ76_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue light-responsive regulator BluF"
                     /protein_id="HCS1967491.1"
                     /translation="MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNG
                     SHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHER
                     DDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWLFIADGSDKE
                     LDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTAD
                     LKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEF
                     TESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITN
                     VHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLN
                     GIPSIAWPEKK"
     gene            2438..3169
                     /gene="bluR"
                     /locus_tag="OQQ76_000907"
     CDS             2438..3169
                     /gene="bluR"
                     /locus_tag="OQQ76_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor BluR"
                     /protein_id="HCS1967492.1"
                     /translation="MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDE
                     EDIQRIEEIKRWISNGVPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRA
                     RIISLGREYPVDQLINHVYLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRK
                     PGKEAILMAWNVEERARLWLEAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGM
                     APTRRQNELLQHWGEQGYKVIFHAP"
     gene            3390..3794
                     /locus_tag="OQQ76_000908"
     CDS             3390..3794
                     /locus_tag="OQQ76_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 domain-containing protein"
                     /protein_id="HCS1967493.1"
                     /translation="MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNI
                     RIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALLHIYGKSTFREYCSTLAGAGVFR
                     WVTDVNHNKRSYYAIDNTLLYIEDVENNKPLI"
     gene            3847..3957
                     /locus_tag="OQQ76_000909"
     CDS             3847..3957
                     /locus_tag="OQQ76_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967494.1"
                     /translation="MGIKVQRLSLWMINTVLLLLPINNHQANTIKLIFEM"
     gene            4193..4237
                     /locus_tag="OQQ76_000910"
     CDS             4193..4237
                     /locus_tag="OQQ76_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967495.1"
                     /translation="MFSKLAPSSIKAMF"
     gene            4490..4810
                     /gene="iraM"
                     /locus_tag="OQQ76_000911"
     CDS             4490..4810
                     /gene="iraM"
                     /locus_tag="OQQ76_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS1967496.1"
                     /translation="MKWVVIDTVIQPTCGISFSAIWGDMKMIIWYQSTIFLPPGSIFT
                     PVKLGIILQEKEYPITIYNIAPFNKNLWSLLKSSQECPPGESKITNKCLHNSCIIKIC
                     SICY"
     gene            complement(4878..6128)
                     /gene="icd"
                     /locus_tag="OQQ76_000912"
     CDS             complement(4878..6128)
                     /gene="icd"
                     /locus_tag="OQQ76_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000444467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HCS1967497.1"
                     /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA
                     MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP
                     LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY
                     AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI
                     ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV
                     IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL
                     FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD
                     FERLMEGAKLLKCSEFGEAIIENM"
     gene            6300..6953
                     /gene="rluE"
                     /locus_tag="OQQ76_000913"
     CDS             6300..6953
                     /gene="rluE"
                     /locus_tag="OQQ76_000913"
                     /EC_number="5.4.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309634.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2457) synthase RluE"
                     /protein_id="HCS1967498.1"
                     /translation="MRQFIISENTMQKTSFRNHLVKRFSSQRSTRRKPENQPTRVILF
                     NKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG
                     KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER
                     KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWREATE"
     gene            6963..7424
                     /gene="nudJ"
                     /locus_tag="OQQ76_000914"
     CDS             6963..7424
                     /gene="nudJ"
                     /locus_tag="OQQ76_000914"
                     /EC_number="3.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase NudJ"
                     /protein_id="HCS1967499.1"
                     /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL
                     VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID
                     CCRWVSAEEILKASNLRSPLVAESIRCYQSEQRYPLEMIGDFNWPFTKGVI"
     gene            7478..8584
                     /gene="mnmA"
                     /locus_tag="OQQ76_000915"
     CDS             7478..8584
                     /gene="mnmA"
                     /locus_tag="OQQ76_000915"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HCS1967500.1"
                     /translation="MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD
                     GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILC
                     NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSH
                     EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQP
                     GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQG
                     HEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFD
                     EPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV"
     gene            8620..9261
                     /gene="hflD"
                     /locus_tag="OQQ76_000916"
     CDS             8620..9261
                     /gene="hflD"
                     /locus_tag="OQQ76_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HCS1967501.1"
                     /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII
                     DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA
                     KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS
                     PQVPAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL"
     gene            9265..10635
                     /gene="purB"
                     /locus_tag="OQQ76_000917"
     CDS             9265..10635
                     /gene="purB"
                     /locus_tag="OQQ76_000917"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002950897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HCS1967502.1"
                     /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL
                     QKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKE
                     KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ
                     YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHI
                     AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW
                     GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ
                     RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT
                     MVDELK"
     gene            10803..11474
                     /gene="phoP"
                     /locus_tag="OQQ76_000918"
     CDS             10803..11474
                     /gene="phoP"
                     /locus_tag="OQQ76_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PhoP"
                     /protein_id="HCS1967503.1"
                     /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHL
                     PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP
                     FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET
                     LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY
                     LFELR"
     gene            11474..12934
                     /gene="phoQ"
                     /locus_tag="OQQ76_000919"
     CDS             11474..12934
                     /gene="phoQ"
                     /locus_tag="OQQ76_000919"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PhoQ"
                     /protein_id="HCS1967504.1"
                     /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF
                     DKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV
                     PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA
                     VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL
                     RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT
                     HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS
                     RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK
                     YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR
                     EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE"
     gene            complement(13671..13952)
                     /locus_tag="OQQ76_000920"
     CDS             complement(13671..13952)
                     /locus_tag="OQQ76_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967505.1"
                     /translation="MTEAEITGLIRRVAGISQQADEQATQPDSVTAENYARVVAEVMR
                     RDGIELNGVDMRNIRTRVLELLAYRRRVEMYREKEKITYHWKKPERLRR"
     gene            complement(13966..15627)
                     /locus_tag="OQQ76_000921"
     CDS             complement(13966..15627)
                     /locus_tag="OQQ76_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HCS1967506.1"
                     /translation="MTAWNRYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREV
                     VDRFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPR
                     KNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNI
                     QAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPE
                     GLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIK
                     ANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGT
                     FTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLVSRHYLPEFQLQNPANKNRA
                     IYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAG
                     FEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNK
                     KKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV"
     gene            complement(15611..15967)
                     /locus_tag="OQQ76_000922"
     CDS             complement(15611..15967)
                     /locus_tag="OQQ76_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase small subunit P27 family"
                     /protein_id="HCS1967507.1"
                     /translation="MARPPKAPAYLDDIAVKQWREKSRQLAERGDLTPADWSNLELYC
                     VNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRR
                     KNPPETEEEDELDRLE"
     gene            complement(16091..16273)
                     /locus_tag="OQQ76_000923"
     CDS             complement(16091..16273)
                     /locus_tag="OQQ76_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967508.1"
                     /translation="MTLMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAK
                     RLTDRDREVMECFRNR"
     gene            complement(16257..16697)
                     /locus_tag="OQQ76_000924"
     CDS             complement(16257..16697)
                     /locus_tag="OQQ76_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707053.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1967509.1"
                     /translation="MPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRAR
                     GYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPL
                     CQACHNQKTKWLDPATKSKRAAGGFHEEEERAANRNNWMYDADE"
     gene            complement(16697..16993)
                     /locus_tag="OQQ76_000925"
     CDS             complement(16697..16993)
                     /locus_tag="OQQ76_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HCS1967510.1"
                     /translation="MTEELITLEEVKLHCRIDGDEEDQLISGYIAASLEACQIHIGRR
                     FDDGLAFTPAIKIGCMMFIAHLYENRQLVADNAKTRVPMTIGALWTAYRDVGVY"
     gene            complement(16990..17328)
                     /locus_tag="OQQ76_000926"
     CDS             complement(16990..17328)
                     /locus_tag="OQQ76_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HCS1967511.1"
                     /translation="MNIGRLRDRVTIQTLKQTRAMTGEILETWVDGHTLWASVNMISS
                     KEAISSGAELATGTVRIWIRYRKDINATSRIKVNTGPLAGRVLNIIGQPLPDAARTRL
                     EILCREGAEK"
     gene            complement(17325..18536)
                     /locus_tag="OQQ76_000927"
     CDS             complement(17325..18536)
                     /locus_tag="OQQ76_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1967512.1"
                     /translation="MWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLPAV
                     MNAVTVISEAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRM
                     MIRHCLLNGNAYAVIQWGRDGFPVALHPYPPQSVNVEQTGEHNWRYCITDAYTGNTRN
                     YLPWEVLHLRYSTDNGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGE
                     WLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDI
                     ARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGI
                     RYQVEFDSADLLRATPGERFATYERGIKSGVMCPNEAREREGLSPRDGGDEFSQAWKQ
                     EVKISEGEKPE"
     gene            complement(18538..19110)
                     /locus_tag="OQQ76_000928"
     CDS             complement(18538..19110)
                     /locus_tag="OQQ76_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309618.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HCS1967513.1"
                     /translation="MGEKIMKSMEIRSSEITTSASNTLTGYVVRWDNLSELLWGEFYE
                     KFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTG
                     RDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSDV
                     ELARRSLYEQHPEKMPRADNRRWWADLAGV"
     gene            complement(19150..20307)
                     /locus_tag="OQQ76_000929"
     CDS             complement(19150..20307)
                     /locus_tag="OQQ76_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HCS1967514.1"
                     /translation="MPRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGAKFDELR
                     AKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRNYILTGETRALSTGVPADGGY
                     TVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGATVNHGEEGKAREQTS
                     TPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGDTFTETEESDLVVGDGD
                     KKAKGFLSVPRAEKNDKERDFGTLQVIKPSESLAWTSADPLIDLKFALHKKYRKNAVW
                     VVNSTTAAKLQKVKNANGDYIWRDRLQAGDPDTLLGLPVEYLEFMPDNVIALGDFKRG
                     YYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILELPQDDD"
     gene            complement(20595..20867)
                     /locus_tag="OQQ76_000930"
     CDS             complement(20595..20867)
                     /locus_tag="OQQ76_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000233308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
                     /protein_id="HCS1967515.1"
                     /translation="MVHDRIAEELEAKGFYRRASARWGEVMQLVETDKERHHITMRRL
                     ECSRKAQRPPEPPDNYGDLKKAVDRTYAEMGMDGAGDEIWRNYQDR"
     gene            complement(20877..21287)
                     /locus_tag="OQQ76_000931"
     CDS             complement(20877..21287)
                     /locus_tag="OQQ76_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS1967516.1"
                     /translation="MTAQIAAYGRLVADPQLKTTSKGTQMAMASMAVPLPCNQADDGQ
                     ATMWLSVLAFGRQADALAKHHKGELVSVAGNMQVSQWTGQNGETRQGWQVIADSVISA
                     RTARPGGSRRKTTGTQGNQPPAGGDDPYGDDIPF"
     gene            complement(21284..21541)
                     /locus_tag="OQQ76_000932"
     CDS             complement(21284..21541)
                     /locus_tag="OQQ76_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001260558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967517.1"
                     /translation="MRTSGKLNNQKKQHNRAIDLTEHWLRVAIKIIDRNTGEGYAKAH
                     PDLISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEVES"
     gene            complement(21830..23578)
                     /locus_tag="OQQ76_000933"
     CDS             complement(21830..23578)
                     /locus_tag="OQQ76_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707046.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1967518.1"
                     /translation="MKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPAS
                     GDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDA
                     NFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDG
                     VCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKRVINNAVEALKVIAE
                     PMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFH
                     KWLDHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGK
                     QNTVSAEMTSLDDAGGRAQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEK
                     RFTTVIRAVVLATNNNPMIFTERAGGVSRRRVIFRFDNIVSEAEKDRELPEKIAAEIP
                     VIIRRLLANFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMG
                     GGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKG
                     VTQTNAITTDDCDAFL"
     gene            complement(23575..23874)
                     /locus_tag="OQQ76_000934"
     CDS             complement(23575..23874)
                     /locus_tag="OQQ76_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HCS1967519.1"
                     /translation="MKLKYSGLTASGKTRTKFMRGDIYRDQYGGTVMIKGVEERRVTY
                     RREGYEYDCVMPVYQFRRDFSLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK"
     gene            complement(23880..24107)
                     /locus_tag="OQQ76_000935"
     CDS             complement(23880..24107)
                     /locus_tag="OQQ76_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001824715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967520.1"
                     /translation="MHKIPFEVLIHSENALIKAREMNALLIKLIEVPEGDEDHSSLIF
                     AAVQTLLTPVIDELNKAMAIHENNKAPHTGE"
     gene            complement(24100..24330)
                     /locus_tag="OQQ76_000936"
     CDS             complement(24100..24330)
                     /locus_tag="OQQ76_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000336144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967521.1"
                     /translation="MCNKTTPDAAEEAMQILIRALVDVTHMVEIMERKSQSEHDKRKL
                     KTIKIIAKNSLIKVTDILNEDIKRIREKICDA"
     gene            complement(24320..24550)
                     /locus_tag="OQQ76_000937"
     CDS             complement(24320..24550)
                     /locus_tag="OQQ76_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000076676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967522.1"
                     /translation="MSQEITLQQAAERAHQIEVICALAEDYPSMMTDSESGAIIGLLK
                     RLSGEVCVFLSDEQERRTLISNEKKCGGVHVQ"
     gene            complement(24547..25965)
                     /locus_tag="OQQ76_000938"
     CDS             complement(24547..25965)
                     /locus_tag="OQQ76_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS1967523.1"
                     /translation="MNTGYSPEQGRGFVRPEKQNLQNFAEIIPVISGLTGGSETNIVN
                     ARALQMFDDKKGVNLTYTPDGNQNMSIISESGFYKLIKTKSAPLPERLCEQLTYCAKN
                     ESEQWDYINHVEKRHNCRITGKTKATRYGGPSTQATRYPQRMSIANNATFAAGGQCNQ
                     SGSVRCHTCNERFSLYSLRNCSRAKAHGANLSDSCSIFLRRLFRAGDNVLVNSLSVIV
                     LSCIAMRRNTLHHGADGDYSGSLVLRRWSSSRATVTSCPISSAALIPSFSTCASASSE
                     ETRGFSPLPSAWRRAISPRTAVTIKFALVSPGCRDASMPLTTSCGNLAFSCCDLLLTE
                     LLDMFAPPINNGMQCNTKVNTKKDLKWYSPKCNVNTTSADTCNSAIETTKPRTVGAVT
                     GLLTTNDNESIEVAMRNHTTHPQGRDSHNLNKYIWRFIALSTAQPRVITIEATSEQEA
                     RQQSPAGCVMVFAARIRQGVGL"
     gene            complement(26018..26206)
                     /locus_tag="OQQ76_000939"
     CDS             complement(26018..26206)
                     /locus_tag="OQQ76_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001352456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HCS1967524.1"
                     /translation="MLSTDRFIREKECQQLTGLSRSCRYRLEKAGQFPSRRKLGGRSV
                     GWSLSEVLAWKDSCEAVH"
     gene            complement(26567..27796)
                     /locus_tag="OQQ76_000940"
     CDS             complement(26567..27796)
                     /locus_tag="OQQ76_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000085269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1967525.1"
                     /translation="MSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLT
                     WYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQE
                     ALKPVTVGDALTYWLESYAKENRVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACF
                     DQVAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTK
                     ELGELLQALDKKIFSPYYVALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSK
                     TKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLKHPHWSL
                     HDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRDALDMWTERLGI
                     LAGTHENVTTLPIAREI"
     gene            28045..29166
                     /gene="roxA"
                     /locus_tag="OQQ76_000941"
                     /gene_synonym="ycfD"
     CDS             28045..29166
                     /gene="roxA"
                     /locus_tag="OQQ76_000941"
                     /gene_synonym="ycfD"
                     /EC_number="1.14.11.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309600.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[50S ribosomal protein L16]-arginine
                     3-hydroxylase"
                     /protein_id="HCS1967526.1"
                     /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLA
                     MESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRE
                     LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLL
                     QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYV
                     LQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSR
                     HELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALD
                     ALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG"
     gene            complement(29215..30441)
                     /gene="pepT"
                     /locus_tag="OQQ76_000942"
     CDS             complement(29215..30441)
                     /gene="pepT"
                     /locus_tag="OQQ76_000942"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HCS1967527.1"
                     /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE
                     MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD
                     IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNI
                     PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV
                     GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLAGMKGTVERADMH
                     YIIRDFDRKQFEARKCKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD
                     IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK
                     AVQVIVRIAELTAQRK"
     gene            30691..31827
                     /gene="potA"
                     /locus_tag="OQQ76_000943"
     CDS             30691..31827
                     /gene="potA"
                     /locus_tag="OQQ76_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HCS1967528.1"
                     /translation="MGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGE
                     FLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFP
                     HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIAR
                     AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI
                     VVMREGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGREC
                     NIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELE
                     NGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK"
     gene            31811..32674
                     /gene="potB"
                     /locus_tag="OQQ76_000944"
     CDS             31811..32674
                     /gene="potB"
                     /locus_tag="OQQ76_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309597.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HCS1967529.1"
                     /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV
                     KMVLTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLL
                     FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI
                     LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPA
                     MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR
                     LLNKKVSELDD"
     gene            complement(32906..>32974)
                     /locus_tag="OQQ76_000945"
     CDS             complement(32906..>32974)
                     /locus_tag="OQQ76_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1967530.1"
                     /translation="VLLNRVDTSTAPDIEWPTSPAE"
BASE COUNT         7915 a         8392 c         7803 g         8864 t
ORIGIN      
        1 ttaaattggt gacagcctgc cctaacactg ctgactcttc ttctaacaaa ttacccgaac
       61 tgcgaaagta acttgctaac tggagcttta tcagttattg cattatgaat tgtagtatct
      121 tcaagcatgg taacctctca tcttacttat gaaattttaa tgtattctgt ttattttctt
      181 accattgaac atacttttat tgtcagctgt cgctgttctt cggtttggcc ctcctgaatc
      241 actattgcta aaatcacgaa ttatgctgtc aattaaatcg cgtcggaaag catcttcctc
      301 agccgatttc attacgagta attgcttaat aagagtctgc aatgaaaaat ttatcttcat
      361 gcgcagtatc tggagcaccg cctggccagt aatttcatat tttatacgtt cattatcaga
      421 tgtcttcata acgacttcat agctaacctg ttaaataatc aggctgttgc attattcaaa
      481 aagcaaccca attagtgcat tataatgttt ctgttcctct tccccagtcg cgtgttccag
      541 tcggcaaaga agtttggcac aaagcgactt tcgactcaga ttacgtccat ctttcaaaat
      601 ctcagtcaca atttccccga gagtttcctg ctgagtaggc cagttagctt ttgcaaagta
      661 acgagtgatt gctcccgcag aatctaaagt cactgaattt tgatgcatgc tacgcctctg
      721 ttaaaaatgt taatcaatgt taagtgaggc aacaatagca aacttgtacg aaatatgtgt
      781 acagaatgat aaattaattt tttgcaatta gtgctaatac atataaaaca atgtattatg
      841 ataaaacata ttgcatcatt taactgacaa tctgtacaag atttttcgcc aactagtgtt
      901 caactttttc cattttttat caatgtaaag aaacggttat gttttggtat taaaagaaag
      961 acacaagaag atatgtctgt taccgtctta ctctcgcctc acccattacc ctggattgtt
     1021 aatgcttacc acccttattt atcgtagcca tatacgtgac gacgaacctg tcaaaaaaat
     1081 cgaagaaatg gtttcgatag caaatcgcag gaacatgcag tctgacgtaa cagggatctt
     1141 actgtttaat ggttctcatt ttttccagct tctggaaggt ccggaagaac aggttaaaat
     1201 gatatatcgg gctatatgcc aggatccacg gcactataat attgttgagc tgctgtgcga
     1261 ttacgcgcct gctcgccgtt ttggcaaagc gggaatggaa ttatttgatt tgcgcctgca
     1321 cgagcgagat gacgttttac aggccgtatt cgacaaaggc acatcaaaat ttcagctaac
     1381 ttatgatgac agagcgctac aattttttcg tacttttgtc cttgcaaccg aacaatcaac
     1441 ctatttcgag atccctgccg aagactcctg gctttttatc gctgacggat ctgataaaga
     1501 acttgattcc tgtgcccttt caccaactat aaacgaccac tttgcctttc atcctattgt
     1561 cgatccctta tcgcggcgga taatcgcttt tgaagccatt gtgcaaaaaa atgaagatag
     1621 cccatcagcc atagcggttg ggcagcgtaa agacggggaa atctacacag cggatctcaa
     1681 aagtaaggcg cttgcattca cgatggcaca cgcacttgag ctcggtgata aaatgatttc
     1741 aatcaatcta ttacctatga ccctggttaa cgaacctgac gcagtctctt ttttacttaa
     1801 tgaaataaag gccaatgctc tggtgcctga acaaatcatc gttgaattta ctgaaagtga
     1861 agtcatatct cggtttgatg agtttgccga agcgattaaa tcgctaaagg ctgctggtat
     1921 cagtgtagca attgatcatt ttggcgcagg ttttgctggt ttgttactcc tgtcacgctt
     1981 ccagcctgac agaattaaaa tcagtcagga attgattacc aatgttcata aaagtgggcc
     2041 acggcaggca attattcagg cgatcataaa atgctgtaca tcacttgaaa ttcaagtcag
     2101 tgctatgggc gtggcaacac cagaagagtg gatgtggctt gaatccgcag gaattgagat
     2161 gtttcaggga gatctgtttg ctaaagctaa attgaatggt atcccttcca tagcgtggcc
     2221 agagaaaaaa taattttcag catattcttt cacatgattt cagtaaatca tcgtgaaaat
     2281 gaatacgtta cgtttaaatt taatccacat taaaaataat gtttcatcca atttagctga
     2341 aatcttattt atactttgta caattttagc gtatattgta caaagtatta ttgggtcgtg
     2401 tacaggcgac ggagatttgt gaccgcaagg aggaattgtg gcttattaca gcattggtga
     2461 tgttgctgaa cgttgcggga ttaatcctgt cactctccgg gcctggcaac gccgctacgg
     2521 tttgttaaaa ccacagcgca gtgaaggcgg acaccgactc tttgatgaag aagacataca
     2581 acgcatcgaa gagatcaagc gttggataag taatggcgtc cctgtaggca aagttaaagc
     2641 attactggaa accaccagcc aggatacgga agatgactgg agccgcctgc aagaagagat
     2701 gatgtcaatt cttcgcatgg ctaatcctgc caaactacgc gcgagaatta tttcactggg
     2761 tcgagagtac ccagtagatc aattgattaa tcatgtttac cttcctgttc gccagcgtct
     2821 cgtgcttgat cacaacacct cccgcattat gagcagtatg tttgacggcg cattaattga
     2881 atacgcagca acctcgcttt tcgaaatgcg ccgtaagccc ggtaaagaag ccattctgat
     2941 ggcgtggaat gttgaagaga gagcacgatt gtggctggaa gcatggcgtt tatcattgtc
     3001 aggatggcac atttctgttc ttgctgatcc cattgaatcg ccgcgcccgg aactgttccc
     3061 gacgcaaaca ttgattgtct ggacaggcat ggcaccaacg agaaggcaaa acgaactttt
     3121 acaacactgg ggtgagcaag gttataaagt catctttcat gccccctaat ttcaccttta
     3181 tcccgcccct tagacagaat gttataatct gaacccacaa cagcatttgt accggagctg
     3241 atccgttgca aaatgctcac cgggagaatt caggtaatcc ctctatcaca ctctgtacat
     3301 atcacagcca aaggacagac cagattgaag tggtaaaacc gatcgtgcac actacgcagt
     3361 ctcacaacta acaagaggtt attatcctga tggatcaggt cgttgttttt caaaagatgt
     3421 ttgagcaagt gagaaaagag caaaacttct cctggtttta ttcagaatta aaacatcacc
     3481 gtattgcaca ttacatttat tatctggcta cggataacat cagaattatt actcacgatg
     3541 acacggtttt gttattaaga ggaaccagga acctgttaaa agttagtacg accaagaacc
     3601 ctgctaaaat aaaagaggcc gcattgcttc atatttacgg aaaatctaca tttcgggaat
     3661 actgttcaac actggcaggc gcgggcgttt tccgttgggt tactgatgtt aatcataaca
     3721 aacgcagtta ctacgccatt gataatacgc ttttatatat tgaagatgta gaaaataata
     3781 aaccattaat ctagctaaag ttggatgctt aagaaatgct tcataattca gtaaggcatt
     3841 agcataatgg gaataaaagt acagagacta tccctatgga tgataaatac tgtcctttta
     3901 ttgctaccca taaataatca ccaggccaat actatcaaat tgatatttga aatgtgatca
     3961 cttgactttc tattcgttat tttataacgg ttaatatatt tataaaaaca acgggtgtgc
     4021 catacgcccg tttcaatact taacgcacat gtgttttggt ttattcatca tccagttata
     4081 cgtattttag ccaggaacag gttaaacctt tcctatataa ctcaaaaatt gaaaccttat
     4141 tctcatgtca tgtttatatt cattattatc gttatataaa aaggcaacca taatgtttag
     4201 caaattggca ccaagtagca taaaggctat gttttaatta caggatgttc agtcatttga
     4261 atgtataaca ttatagctaa acaaatctaa aacgaagtga ataatttatt gttttcacta
     4321 aatctcattt tgtttaacat ccattgagat tccttgcttt aaattttgtt ttatataagc
     4381 aatcgtttta attaatttat tttttgaagg ggtaatatac tcatatgcaa aataaagaaa
     4441 tgaacatcca aatgaactat attaaatacc gtgggataag acataacaaa tgaagtgggt
     4501 agtaattgac acggtaattc aacctacatg cggcatatct ttttcagcca tatggggtga
     4561 tatgaaaatg atcatctggt atcaatctac tatatttctt cctcctggaa gtatatttac
     4621 accggttaag cttggtatta tccttcagga aaaagaatat cctattacta tttataacat
     4681 tgcaccattc aacaagaatt tatggagttt actcaaaagc agtcaagagt gtcctccagg
     4741 agaaagcaaa ataacaaata aatgtttaca taatagttgc attataaaaa tatgctcgat
     4801 atgctattaa taatatccac ataaataaaa caacgggcgt gttatacgcc cgtttcaata
     4861 tttaactcat ggagagatta catgttttcg atgatcgctt caccaaactc tgaacatttc
     4921 agcagcttag cgccttccat cagacgttca aagtcataag ttacggtttt cgcgttgata
     4981 gcaccttcca tacctttaac aattaaatca gccgcttcag tccaccccat atggcgcagc
     5041 atcatctcag cggagaggat gatagagcct ggatttactt tgtcctgacc ggcgtatttc
     5101 ggcgcagtac cgtgggtggc ttcaaacagg gcgcattcgt caccgatgtt tgctccaggg
     5161 gcgataccga taccgccaac ctgcgctgcc agggcgtcag aaatgtagtc accgttcagg
     5221 ttcatacagg cgataacatc atattcagcc ggacgcagca ggatctgttg caggaatgca
     5281 tcagcaatca cgtctttaat gacgatctct ttgccggtgt tcgggttttt aactttcagc
     5341 cacgggccgc cgtcgatcag ttcaccgcca aactcttcac gcgccagctg gtagccccag
     5401 tctttaaacg cgccttcggt gaacttcatg atgttgcctt tgtgcaccag agtcacagag
     5461 tcacgatcgt tagcaattgc gtattcgatc gctgcacgaa ccagacgttt ggtgccttct
     5521 tccgaacacg gcttaatacc gataccacaa tgttccggga agcgaatttt cttcaccccc
     5581 atctcttcac gcaggaattt aatcactttc tcggcgtcgg cagagtctgc tttccattcg
     5641 atacccgcat aaatgtcttc cgagttttca cggaagataa ccatatcggt cagttcaggg
     5701 tgtttaaccg ggcttggagt gccctgatag taacgtaccg gacgcaggca gatgtagaga
     5761 tccagttcct ggcgcagggc aacgttcaga gagcgaatac cgccaccaac aggagtggtc
     5821 agcggacctt taatggcaac gcgatattca cgaatcagat caagggtttc agcaggcagc
     5881 cagacatcct gaccataaac ctgtgtggat ttttcaccgg tgtaaatttc catccaggag
     5941 attttacgct cgcctttata ggctttctcg actgcagcgt cgaccacttt cagcatggct
     6001 ggggttacat ctacaccgat tccatcacct tcaatgtaag ggataatcgg attttcagga
     6061 acgttgagtt tgccgttttg cagggtgatc ttcttgcctt gtgccggaac aactacttta
     6121 ctttccattc acctctcctt cgagcgctac tggtttgctc gtctgccacc acgttgcata
     6181 tgcgtttgcg tcctgcgata cggatgcttt agagcaattt tttgttaatg atttgtaatt
     6241 ggcttgtcaa tactacccta ttgtttgccg tcatgaaaga tgcgcgttat taggctataa
     6301 tgcggcaatt cataatctct gaaaatacca tgcaaaaaac ttcttttaga aatcacctgg
     6361 ttaagcgatt cagctcgcaa cgttctacca ggcgtaaacc tgaaaaccag cccacgcgtg
     6421 tgatcctgtt caataaaccc tacgatgttc ttccgcagtt caccgatgaa gccggacgca
     6481 aaacattaaa agaattcatc ccggttcagg gcgtttatgc agcaggtcgt cttgaccgcg
     6541 atagcgaagg gttactggtg ctgaccaata acggcgcgtt gcaggcgcgt ttaacccagc
     6601 cgggcaaacg caccgggaaa atctattatg tgcaggtgga aggtattccc acacaagacg
     6661 cacttgaagc cttgcgcaat ggcgtaacct taaatgatgg ccctaccctg cccgccggcg
     6721 cggagctggt tgacgaacca gcgtggttat ggccgcggaa tccaccaatt cgtgaacgca
     6781 aaagtattcc caccagctgg ctgaagatca ccttatatga aggacgtaat cgccaggtgc
     6841 gccgcatgac cgcccatgtt ggtttcccca cactgcgact gattcgttat gcgatgggtg
     6901 attacacttt ggataacctt gccaatggcg aatggcgaga agcaacagaa taaggatgca
     6961 caatgtttaa accgcacgtt accgttgctt gcgtagtgca cgcagagggt aaatttttag
     7021 tcgttgaaga gacgattaat ggtaaagcgt tatggaacca acctgccggg catctggaag
     7081 ccgatgaaac cttagtggaa gctgccgccc gtgagctatg ggaagaaacc ggcatcagcg
     7141 cgcaaccgca acactttatt cgtatgcatc agtggattgc gccagataaa acgccgtttt
     7201 tgcgtttcct ctttgccatt gagcttgagc aaatatgccc gacccagcct catgacagcg
     7261 atatcgactg ctgtcgttgg gtcagcgccg aagaaatttt aaaggcgtca aatcttcgtt
     7321 cgccgctggt ggcggaaagt atccgttgtt atcaaagcga gcaacgctat ccgctggaga
     7381 tgattggcga ttttaactgg ccttttacaa agggtgtcat ctaaaaggct gcgtgataga
     7441 atacgccgcc ttgaagttca atgtcgtgag tgatccaatg tctgaaaccg caaaaaaagt
     7501 aatcgtcggc atgtccggcg gtgtcgattc ctccgtttct gcctggctgt tgcaacaaca
     7561 gggatatcag gttgaaggcc tgtttatgaa gaactgggaa gaagacgacg gtgaggaata
     7621 ttgcacagcg gcagcggatc tggctgatgc ccaggctgtc tgcgacaagc tcggcattga
     7681 actgcacacc gttaactttg ctgccgagta ctggaacaac gtcttcgaac tgttccttgc
     7741 cgaatataaa gccggtcgca cgccgaatcc ggatattctg tgcaacaaag agatcaaatt
     7801 taaagctttc ctcgaatttg ccgccgaaga tttaggtgcc gattatatcg ctaccggtca
     7861 ttacgtacgt cgggccgatg tcgatggcaa gagccgcctg ctgcgtggtc tggacagcaa
     7921 taaagaccag agctacttcc tttatacgct cagccatgag cagattgcgc aaagcctgtt
     7981 cccggtcggc gaactggaaa aaccgcaggt gcgtaagatt gctgaagatc ttggtctggt
     8041 caccgcgaag aaaaaagact ctaccggcat ttgcttcatt ggcgaacgta aattccgcga
     8101 gttcctgggc cgttatctcc cggcgcaacc gggcaaaatc attaccgtcg atggcgatga
     8161 aattggtgag caccaggggc tgatgtatca cactctcggt cagcgtaaag gtctgggtat
     8221 cggtggcacc aaagaaggca ccgaagaacc gtggtatgtg gtggacaaag acgtcgaaaa
     8281 caacattctg gttgttgcgc agggccatga acacccgcgg ctgatgtctg tcgggttgat
     8341 tgcccagcag ttgcactggg tcgatcgcga accattcacc ggtactatgc gttgcacggt
     8401 aaaaacccgc tatcgccaga ccgatatccc ttgcaccgtc aaggcgctgg acgatgatcg
     8461 cattgaagtg attttcgatg aaccggttgc cgccgtgacg ccgggccagt ctgccgtctt
     8521 ctataacggt gaagtgtgcc tcggtggcgg tattattgag cagcgtctgc cgctgccggt
     8581 ctgattatta tctttactta aaacaaggaa gcagtgaacg tggcaaagaa ttactatgac
     8641 atcaccctcg ccctggccgg tatttgtcag tcggcacgcc tggtgcaaca actcgctcac
     8701 caggggcatt gtgatgccga tgcgctacac gtctcactca acagtattat tgatatgaac
     8761 cccagctcga cgctggcggt ttttggcggt agcgaagcca acctgcgcgt cgggctggaa
     8821 accctgctcg gcgtgctcaa tgccagcagt cgccagggct taaacgccga attaacccgc
     8881 tacacactca gcttgatggt gcttgagcgc aaactctcct cagcgaaagg cgcgctcgac
     8941 actctgggca accggatcaa cggcctgcaa cgccagctcg aacacttcga tttacagtcc
     9001 gaaacgctga tgagcgcgat ggctgctatc tatgttgatg tgatcagccc gcttggcccg
     9061 cgcattcagg tcaccggttc ccctgctgta ctgcaaagcc cacaagtgcc ggcgaaagtt
     9121 cgcgcaaccc tgctggcagg cattcgcgcc gccgtgctct ggcaccaggt cggcggcgga
     9181 cgtctgcaac tgatgttttc tcgtaatcgc ctgaccactc aggcaaaaca aattcttgct
     9241 catttaaccc cggagttgtg atctatggaa ttatcctcac tgaccgccgt ttcccctgtc
     9301 gatggacgct acggcgataa agtcagcgcg ctgcgcggga ttttcagcga atatggtttg
     9361 ctgaaattcc gtgtacaagt tgaagtacgt tggctgcaaa aactggccgc gcacgcagcg
     9421 atcaaggaag ttcctgcttt tgctgccgac gcaatcggtt accttgatgc aattgtcgcc
     9481 aatttcagcg aagaagatgc cgcacgcatc aaaaccatcg agcgtaccac taaccacgac
     9541 gttaaagcgg ttgagtattt cctgaaagaa aaagtggcgg agatcccgga actgcacgcg
     9601 gtttctgaat tcatccactt tgcctgtact tcggaagata tcaataacct ctcccacgca
     9661 ttaatgctga aaaccgcgcg tgatgaagtg atcctgccgt actggcgtca actgattgat
     9721 ggcattaaag atctcgccgt tcagtaccgc gatatcccgc tgctgtctcg tacccacggt
     9781 cagccagcca cgccgtcaac catcggtaaa gagatggcaa acgtcgccta ccgtatggag
     9841 cgccagtacc gccagcttaa ccaggtggag atcctcggca aaatcaacgg cgcggtcggt
     9901 aactataacg cccacatcgc cgcttacccg gaagttgact ggcatcagtt cagcgaagag
     9961 ttcgtcacct cgctgggtat tcagtggaac ccgtacacta cccagattga accgcacgac
    10021 tacattgccg aactgtttga ttgcgttgcg cgcttcaaca ccattctgat cgactttgac
    10081 cgtgacgtct ggggttatat cgcccttaac cacttcaaac agaaaaccat tgctggtgag
    10141 attggttctt ccaccatgcc gcataaagtt aacccgatcg acttcgagaa ctccgaaggg
    10201 aatctgggcc tttccaacgc ggtattacag catctggcaa gcaaactgcc ggtttcccgc
    10261 tggcagcgtg acctgaccga ctccaccgtg ctgcgtaacc tcggcgtggg tatcggttat
    10321 gcgctgattg cgtatcaatc caccctgaaa ggcgtgagca aactggaagt gaaccgtgac
    10381 catctgctgg atgagctgga tcacaactgg gaagtgctgg cggagccaat ccagacagtt
    10441 atgcgtcgct atggcatcga aaaaccgtac gagaagctga aagagctgac tcgtggtaag
    10501 cgcgttgacg ccgaaggcat gaagcagttt atcgacggtc tggcgttgcc agaagaagag
    10561 aaagcccgcc tgaaagcgat gacgccggca aactacattg gtcgcgccat caccatggtt
    10621 gatgagctga aataaactcg tatcagtgcc ggatggcgat gctgtccggc ctgcttatta
    10681 agattatccg ctttttattt tttcacttta cctcccctcc ccgctggttt atttaatgtt
    10741 tacccccata accacataat cgcgttacac tattttaata attaagacag ggagaaataa
    10801 aaatgcgcgt actggttgtt gaagacaatg cgttgttacg tcaccacctt aaagttcaga
    10861 ttcaggatgc tggtcatcag gtcgatgatg cagaagatgc caaagaagcc gattattatc
    10921 tcaatgaaca tttaccggat attgcgattg tcgatctcgg attgccagac gaggacggtc
    10981 tgtcactgat tcgccgctgg cgtagcaatg atgtttcact gccgattctg gtattaaccg
    11041 cccgtgaaag ctggcaggac aaagtcgaag tattaagtgc tggtgctgat gattacgtga
    11101 ctaaaccatt tcatattgaa gaggtgatgg cgcgaatgca ggcattaatg cggcgtaata
    11161 gcggtctggc ttcacaggtc atttcgctac caccgtttca ggttgatctc tctcgccgtg
    11221 aattatctat taatgacgaa gtgatcaaac tgaccgcgtt cgaatacacc attatggaaa
    11281 cgttgatacg caataatggc aaagtggtga gcaaagattc gttaatgctc caactctatc
    11341 cggatgcgga gctgcgggaa agccatacca ttgatgtact gatgggacgt ctgcgcaaaa
    11401 aaattcaggc acaatatccg caagaagtga ttactaccgt tcgcggccag ggctatttgt
    11461 tcgaattgcg ctgatgaaaa aattactgcg tctttttttc ccgctctcgc tgcgggtacg
    11521 ttttctgttg gcaacggctg cggtagtact ggtgctttcg cttgcctacg gaatggtcgc
    11581 gctgatcggt tatagcgtca gtttcgataa aactacgttt cggctgttac gtggcgagag
    11641 caatctgttc tatacccttg cgaagtggga aaacaataag ttgcatgtcg agttacccga
    11701 aaatatcgac aagcaaagcc ccaccatgac gctaatttat gatgagaacg ggcagctttt
    11761 atgggcgcaa cgtgacgtgc cctggctgat gaagatgatc cagcctgact ggctgaaatc
    11821 gaatggtttt catgaaattg aagcggatgt taacgatacc agcctcttgc tgagtggaga
    11881 tcattcgata cagcaacagt tgcaggaagt gcgggaagat gatgacgacg cggagatgac
    11941 ccactcggtg gcagtaaacg tctacccggc aacatcgcgg atgccaaaat taaccattgt
    12001 ggtggtggat accattccgg tggagctaaa aagttcctat atggtctgga gctggtttat
    12061 ctatgtgctc tcagccaatc tgctgttagt gatcccgctg ctgtgggtcg ccgcctggtg
    12121 gagtttacgc cccatcgaag ccctggcaaa agaagtccgc gaactggaag aacataaccg
    12181 cgaattgctc aatccagcca caacgcgaga actgaccagt ctggtacgaa acctgaaccg
    12241 attgttaaaa agtgaacgcg aacgttacga caaataccgt acgacgctca ccgacctgac
    12301 ccatagtctg aaaacgccac tggcggtgct gcaaagtacg ctgcgttctc tgcgtagtga
    12361 aaagatgagc gtcagtgatg ctgagccggt aatgctggag caaatcagcc gcatttcaca
    12421 gcaaattggc tactacctgc atcgtgccag tatgcgcggc gggacattgc tcagccgcga
    12481 gctgcatccg gtcgccccac tgctggacaa tctcacctca gcgctgaaca aagtgtatca
    12541 acgcaaaggg gtcaatatct ctctcgatat ttcgccagag atcagctttg tcggtgagca
    12601 gaacgatttt gtcgaggtga tgggcaacgt gctggataat gcctgtaaat attgcctcga
    12661 gtttgtcgaa atttctgcaa ggcaaaccga cgagcatctc tatattgtgg tcgaggatga
    12721 tggccccggt attccattaa gcaagcgaga ggtcattttc gaccgtggtc aacgggttga
    12781 tactttacgc cctgggcaag gtgtagggct ggcggtagcc cgcgaaatca ccgagcaata
    12841 tgagggtaaa atcgtcgccg gagagagcat gctgggcggt gcgcggatgg aggtgatttt
    12901 tggtcgccag cattctgcgc cgaaagatga ataaatatgt ccttttatca ccatatcaag
    12961 acaagccatt gatttaatta aataatcttc actgaaaaaa gtgccaaaaa tcgcaaattg
    13021 actacaccat taactacacc gttcggtgca ccgtatgaaa caacgtggaa caaatagaca
    13081 caagaaatat acaggcggat catctttcca gggggaagcg caccaattca tgaggggcgt
    13141 taatgtctat atggggatcc ccacctaccg gaattttttt ccggttaaac gttaatcagg
    13201 ctggtgggct ttacctgttc ggtaggtgtt atgattatcg taataccttt cccccaatgg
    13261 ggtaaaagca tcaaccgtaa cgaaagtcgt tatggttgcc actgataccc caaatttggg
    13321 tatcacgagt aagccccaaa atctgggtgt tactcttact acccaaacta cgggtagttt
    13381 ccgtagtttc atggtcgagt tgcagatctg caactccccc attaaccaca ggcgaatttc
    13441 cgccttcggt cattccttaa tcatctgcgt aatcataatg attattcagc aagcgcaatt
    13501 ttgcgctttg cttaaagttc agcgagttac cgcgccgact tcctcaaatt gaggtttccg
    13561 aaaatatcag cgggttagcg attaagctga ccattaatta aactgcgaaa atgtcgtagt
    13621 tgtgaggggt gtagccaacc catttttagg ccgtcgggaa tatcaaccag ttaccgccgc
    13681 aaccgctccg gcttcttcca gtggtacgtt attttctcct tctcccgata catctccacg
    13741 cggcgacggt aggccagcaa ctcaagaact ctggttcgta tgttgcgcat atccacgcca
    13801 ttaagttcta taccatcacg gcgcatcacc tcagcaacaa cacgcgcata gttttcggct
    13861 gtcacgctgt ccggctgcgt ggcctgttcg tcagcctgct ggctgattcc ggcaacgcgg
    13921 cggattaatc ccgttatttc ggcttctgtc atgctgctga cctcattaca ccccgctaaa
    13981 ttcttccagt ttctggcggt ggctgtcgct tatatcaaaa gcaaaatcct catgctctgc
    14041 ctggaatgta ccaaacgcca tcagcgccgc cacgctcggg tctatcttgt tcggtgattt
    14101 tttcttgttc ggcttgatat tggcgttcgc gtcactctgc atcacgacgt tactcatcga
    14161 ccaggacaac accggatcgc cacgatgcac aatcaccctg cggttaacaa aaacttcgaa
    14221 cgatttcgcc gccggactga atctgaggta ggtttgcggg aacggctcca cctcaaaacc
    14281 tgccccctgt aattgcgttc tgagatgcgt ggcgttccac gtatcaaagc ccaccagcct
    14341 gatattaaat ttctccgcgt cctgcatgat gtcatctctg atccggtcgt aatcaatgca
    14401 gtcgccaggc gttgtgcgta tccagcctgc tttagcccac tgacgataga tggcgcggtt
    14461 tttattggcg gggttctgta gctggaactc cggcagataa tgacgggaaa ccagcataat
    14521 ggttttacct accggaaagg catagcacac gctggaaata tcgcttgtgg atgataaatc
    14581 cagccccgcg taacactcct ggccgtgtaa atcttcctcc gtgaacgttc cggcacactc
    14641 agcccatgcg ccgttaccca tccacggggt agtcccctga caccagatat taaatcgctt
    14701 tgtcatcatc tccacccact gcgacggaat accccgcgct ttctggatgg ttgaggccag
    14761 tttttcacga tccacggaaa catcaatatt agggttcgcc tttatccaca tcgccggatc
    14821 atcaacctcg ttttcgtcgt ccagttcgta aatcagtaca aaaattgaat cgttaacctc
    14881 ttcgccgtcc aggatctggc agcaataatc atagtgctgc ttacaggctg aaacgacgtt
    14941 gctgcctgat gtggtaatgg caaataacag cccttcggga cgtgcgccca tccccagctc
    15001 aagcgcggaa taaacgccgt tatcggggtg caagtggtat tcgtccacga tggaaaggct
    15061 ggggtttgtt ccctcgatgg ttgccgcttt tgctgccagc ggctttaaca ggctgttgct
    15121 tttcgggtgt atcaccttat gcgcctgaat attcacccgc ctgcgtaacg gtcgggataa
    15181 aaggcacatc tgacgcgcat catcaaagac gatccgcgcc tggtcacggc tcaccgctgc
    15241 ggtgtagata tcctgctgac cgttctccat aatcagaaac cagttagcca gaatcgcggc
    15301 ggtcgttgat ttcgcatttt tgcgcggcac ttcgataaag gcgctcgtat atttgcgccg
    15361 tccggtggcc ttaaccttaa agccgaggat gcacgcaaag gcgaactgct gccacggctc
    15421 cagctcaatg ggtctgccac gcatcggccc ttttacgtgc gggcacaccc tggaaaaggc
    15481 aataaaccga tccacaacct cacgatcgaa cgtgtaaagg gggcttttaa ggtccgaaaa
    15541 gtaccgttta acggcctgtt tcagccgttt acaggccgga attttgcccg tttttacgtc
    15601 ttctgcgtac ctattccagg cggtcaagct cgtcctcttc ttctgtttcc ggtggatttt
    15661 tacggcggct tatcgggtca aaaccgagca aggaggccat ttttatcatc actctttccg
    15721 cgtcggattt cgcgcttaat gcggggtttc tgctctcgcc gccctgactg ttaacaatgc
    15781 tgaacccgcg cgccgcaagg tctgcgacgg ctttccggta tatcgagtaa ttgacgcaat
    15841 acagttccag attgctccag tcggcgggag tcaggtcacc ccgttccgca agctgccgcg
    15901 atttttcccg ccactgcttc acggcgatat catccaggta ggcgggggct ttcggtggtc
    15961 ttgccatgct tattttttcg ccagattatt tttcaaaaaa ttcccgtgca taaaaatttg
    16021 aggaggcgtt cggtgcccgg cggggtcggg tttgtcctga aaacgccccc caccccgtca
    16081 tacagcctta tcagcgattg cggaaacatt ccataacctc gcggtcacgg tcggttaatc
    16141 gcttcgctgt gatgcgttct gcgcgtcctg acgctttatc tttatgccct gtttcctgtg
    16201 tcttccatgc gtcacgctgc cttataagtc cacggataag gcggttttgt tcccgctcat
    16261 tcatcagcgt catacatcca gttattgcgg ttagcggccc gttcttcctc ttcatgaaat
    16321 ccacctgcgg cacgcttgct ttttgttgcc ggatcaagcc atttcgtttt ctggttatga
    16381 cacgcctggc acaatggttg atggttccat tcgggccaga agagaacatc atcaccgcca
    16441 ttaatcggga taatgtgatc caccaccacg gcgggcgtat atatcccctt ctcaaggcat
    16501 cgcacgcata acgggttttt actcagatac atggcgcggt atttgtccca ctgtctggag
    16561 tacccacgcg cgcggcggtg tcctcgtctg gcatcctctg cacgccatgc cgcccgcctg
    16621 tgctcctcac acttgccgga cttcacgcgc ctgttacagc ctggttctgt gcatcgtctt
    16681 aatggttgcc acggcatcag tacaccccca catcacggta agccgtccag agcgcgccaa
    16741 tcgtcatggg tacgcgcgtt tttgcgttat ccgctaccag ctggcgattc tcgtacaggt
    16801 gagcgataaa catcatgcag ccaatcttta tggctggcgt gaacgccagc ccgtcatcaa
    16861 agcgcctgcc tatatgtatc tggcacgcct caagcgatgc ggcaatgtat ccgctgatta
    16921 actggtcttc ctcgtcgcca tcgatgcggc aatggagttt cacttcttcc agggtgataa
    16981 gttcttctgt catttttccg cgccctcacg acaaagaatt tcaaggcgtg tcctggcggc
    17041 atccggcagc ggctgcccga tgatattcag tacacgcccc gccagcggcc ccgtattgac
    17101 ctttatccgg ctggtggcgt tgatgtcctt cctgtagcgt atccatatcc ttaccgttcc
    17161 agtcgccagt tctgcacccg atgaaatggc ctccttgctg ctgatcatgt tcacgcttgc
    17221 ccagagtgtg tgaccgtcca cccacgtttc gagtatttcg cccgtcatgg ctctggtctg
    17281 tttcagggtc tgaatcgtta ccctgtcacg cagtcgccct atgttcattc cggtttttct
    17341 ccctcgctga tttttacttc ctgtttccat gcctggctga actcatcacc accatcacgc
    17401 ggtgacagtc cttcacgttc gcgggcttcg ttcggacaca taacgccgga tttgatgccg
    17461 cgctcatagg tggcaaagcg ttcgccaggt gtggcccgta acaggtccgc gctgtcaaac
    17521 tccacctgat accggatacc aggtacaggc gaggccacca gcagggcgtt ttttatctgc
    17581 tgctcaaagt tcgccagcca cgggcgcatc gtcatggtga gaaatgcgcg gcttgcctcg
    17641 ctgaaattgc tgtaggtgct gttgctgtat tcctgcaaaa aaatcggcga gacgttgaac
    17701 attctggcga tgtcttcaat ggtgaagcga cgggaggcca gccattcagc atcctgatta
    17761 ctcatgccca gctgctgata gctcataccc ccttcaagga tgggcgtttt tccggcgttt
    17821 ctggcccctt tgtagcgttc cagtgcggct aatgcctgtt tgcccttcac accgtccagc
    17881 cattcgcctg acgtgataac ccctgccgcc atcatgccat cacgcatcac gctcgcgccg
    17941 tggcgttgtt gggccagccc aagccccagc gattcgcggc agatggttac aggtgagcgc
    18001 cccataaaac cgttatccgt ggagtaacga aggtggagaa cctcccacgg taaatagttg
    18061 cgggtgtttc cggtgtaggc gtcagtgatg cagtagcgcc agttatgctc acctgtctgc
    18121 tcaacgttca ccgactgcgg cgggtaagga tgcaaagcga ccggaaaacc atcacgcccc
    18181 cactgaatca ccgcataagc attaccgttt aacaggcagt ggcggatcat cattcgctta
    18241 aactggtagg gggtttgcca tgcgttcggg cgctcgttga ggatgtgatc gaccggatga
    18301 gaatcaagcc actcgcgggc ctccttcccc ttctcattgc gtaccaggta caggtaacac
    18361 ggcatggtag ccaccgcctc agagatgacc gtcacggcgt tcatgacggc gggcagtgat
    18421 tccgctgtcc ccgatgatac gtactcaccc gcccccgtgt tcgatgtgcc agccagcgcc
    18481 ataaactcat caagcgtcat gctgcgctgc tctttttttc ttctgaaagg ccacatatca
    18541 cacccccgct aaatccgccc accagcggcg attatccgca cgcggcattt tttcggggtg
    18601 ctgctcatac agggaacggc gggccagctc cacgtcggaa tcagggtaag ccggtacgga
    18661 tgtaacggta atttcgtaca gttccgccac cagcacggtg cgcacgcatg gatctgttgt
    18721 ggtatcccat acatccttac gggaacgaaa gccaaagctc atgccggata tatcacctcg
    18781 tttaaccagt tcgataacgt cgcgccctgt actggtatcc ggtggggtca gttcaaagcg
    18841 taaccctgtt tcgtcctctt ccagtttcag cgtgccggaa cgggtgcgcc ccagtaacat
    18901 gctgtggtca tgctcataca ggccgcgaac gtcattaccc gccgcaagcc attcagtaaa
    18961 cgccccccgc tggaattttt cgtaaaactc cccccatagc agctctgaaa ggttatccca
    19021 gcgaacaacg tagcctgtaa gcgtgttgct ggcgctggtg gtgatttccg atgaccggat
    19081 ttccatactc ttcataattt tttcacccat aaaacactaa aggggctttt aagccccttc
    19141 tgtatgctgt taatcgtcgt cctgtggcag ttccagaatc ttgatcgcgt tcgaatccac
    19201 cacgccaccg cctaaatatt tctgcgtgaa aattttgatg aagcccggct ctgtgaggtt
    19261 gtccggtctg gtgcgaacac ctgtttcgtg atcaacaatg tagtaaccgc gtttgaagtc
    19321 acccagggca ataacgttat caggcataaa ctccagatat tcgaccggaa ggcccagcaa
    19381 cgtatcagga tcacccgcct gtaaacggtc gcgccagatg taatcaccgt tcgcgttctt
    19441 caccttctga agttttgcgg ccgtcgtgga gttaaccacc cagaccgcgt ttttgcggta
    19501 ttttttatgt aatgcaaatt tcaggtcgat cagcgggtcc gcagatgtcc acgccagaga
    19561 ttcggaaggt ttaattacct gtaacgtacc aaaatcacgc tctttgtcgt tcttctctgc
    19621 acggggtacg gataaaaagc cttttgcttt tttgtcaccg tcgcccacaa ccagatcgct
    19681 ttcttcggtt tccgtgaagg tgtcgccaat ctcacccgtc agccatgaaa ggatgtccac
    19741 atcggaaaaa tccacgattt cctgtgtggt gcgcgggtac gcatagaccg gatacagctt
    19801 aatgctcacc tcgttaatct gcggggtgct ggtctgttcg cgtgccttac cctcttcacc
    19861 gtggttaacg gtcgcaccgc cagcggaaac aagctgctta aactcgttgc tgctgatttt
    19921 cttcacggta cagatgcggc gcatggtgga ttcatccgcc agcattcgca tgatttcggt
    19981 gttcagctcg gggataacgg tataaccacc atcagcggga acgcctgtac ttaatgcgcg
    20041 ggtttcacct gtcaggatgt agtttcgtag ttctgcgggg tcagtggtct gactgctttt
    20101 acctggcttg ctgcgctctt cgtctgcaat ggcttcaagg cgggaaatgt ctttatcgag
    20161 ggattcagct ttagcgcgta attcgtcaaa ttttgcgccc tcagcatcgt taagactgcg
    20221 gttttctttt tccgcgttct ccagcatgtc gcgcatctga tttttaatgg cggttttctg
    20281 ctggcgtaat tcgattattc tcggcataaa aaaagtcctg gggttaagta aggaactcca
    20341 ggacgcggca aaaactcaac cgtttttcat aaggaaatca gcaatcgcac cgatcgtttt
    20401 cccgcctggt aatgaatatt ggcgagaaca ttaacaggcg gaaaagtggc cccagcgtcc
    20461 tggcaccacg ggcgagaata atcatgattc agttcgggta aaatatgccg atccggtcag
    20521 cgaacaacgt ggaacaacca cgaacaaata atttacaaaa catgacaaaa agccggattg
    20581 ctccggctgt gtgattatct gtcctggtaa tttcgccata tttcatcacc agcaccatcc
    20641 atacccattt cggcataagt gcgatcgacc gcctttttca ggtctccgta attatccggc
    20701 ggctccggtg gcctctgtgc cttcctggaa cattccagcc gtcgcatcgt gatgtgatgc
    20761 cgttccttgt ctgtctccac cagttgcatg acttcacccc atcgcgccga cgctctccgg
    20821 taaaagcctt tcgcctccag ttcttccgct atgcggtcat gtaccatcgc cccccctcag
    20881 aacggaatat catcaccgta agggtcatcg cctcccgctg gtggctgatt accctgtgtg
    20941 cctgtggtct tgcgtcggct cccaccaggt cgcgccgttc tggcactgat tacgctgtct
    21001 gcaataacct gccagccctg ccgcgtttcg ccgttctggc ctgtccactg gcttacctgc
    21061 atgttacccg ccacgctcac cagctcgcct ttgtggtgtt ttgccagtgc gtcggcctgt
    21121 ctgccaaacg ccaggacgga taaccacatc gtcgcctgtc cgtcatctgc ctgattgcac
    21181 ggcaggggga ccgccatgct tgccatagcc atttgtgtgc ccttgctggt ggtctttaac
    21241 tgcgggtcag ccaccagccg cccgtaagcg gctatctgtg ctgtcatgat tccacctctc
    21301 cggttttaac gttgatggtt gttacctgtt ccgcttcggc aatctcccgt tccgtcagcg
    21361 tggcaaagtt tgccgccgcc gtggtcatga atgcgcttat caggtcggga tgtgctttcg
    21421 cgtatccttc ccccgtgttg cggtcgatga tttttatcgc cactctcagc cagtgctctg
    21481 taaggtcaat ggcgcggtta tgctgcttct tctgattatt aagttttcct gatgtgcgca
    21541 tttttatttt taccccctcg tttaaaaagt tttgagttgt gcctcccctt gtctacctta
    21601 tctaccttac tggctctcat gccagtaatg gcgcggcttt cagcggggta gagtgctttt
    21661 atccactatc taccccgtat ctacctccct gtctgattca ggtaaaatca ggtagagagg
    21721 gtagatagta ggtagacagt gaaaaaaggc tgtctaccta agttaatata ctgaattaaa
    21781 tgtatttttc tttactcagg tagacagggt agacagccat tgcaaaaaat tataaaaacg
    21841 cgtcgcaatc gtctgttgtt attgcgttag tctgcgttac tcccttaact ttccgcgtaa
    21901 tatattcatg tccgtaaact ttcgcggctg gcttcatagc cttgccaaag tcatttacgt
    21961 ttagcggttt gctcctgcct gcgtatgcca taaacgccag atagacgcgg taaaggctgt
    22021 ttctggtcgt gtacttcact gaatcgccac cgccacccat catcaggccg cgcgcttcct
    22081 ccagaaaatt caggaactgg caaaactcaa taaccggatc cgtctgttgc tttattgcca
    22141 gtgcttcatc accgtcacgc tgttccagta gtaaagcccg tgccttctca gggtcggtaa
    22201 agttcgccag caagcggcgg ataatgacag ggatttcagc cgcgatcttt tccggtagct
    22261 ccctgtcttt ttctgcctcg cttacgatat tgtcgaagcg gaaaataacc cgacgacgtg
    22321 acacgcctcc ggcccgttcg gtgaatatca tcgggttgtt attggtcgcc agcaccaccg
    22381 ccctgattac cgtagtgaaa cgcttttcat atttcgggtt gatttccacg gggtcgccgc
    22441 ccgtgatttt cttgatgccc gtgccttcgc ctgtatattt cggctggtct gccaggacga
    22501 taagacgact cccgacaacc tgcgcacgcc caccagcatc atcaagcgat gtcatttccg
    22561 cgcttaccgt gttttgtttc cccgctaaaa ggctggcgat gtgggtgaat gtacttttgc
    22621 cgctcccgcc gtctccggtg gcctcaataa acatctgcca gtcgtaccgg ttcgccataa
    22681 tcatgtacag cgcggcacat atacgcatca tcttgcgctg gtcttttccg gctgcgtgat
    22741 caagccattt atgaaagttt ggcgcgttat cgcggatgtt ctccccaggt gctggtggcg
    22801 tgtactcaat gccgttgtgc gtggtgatcc agttctccgg cgtgtgcggg gaaaattccc
    22861 ccgttttcag gtcaagcgca ccattggcga acggcaacaa atcgccggac ggctcgccca
    22921 ttggttcggc aataactttt aacgcttcca cggcgttatt gattacgcgc ttgctgaaag
    22981 tggccctgtg ctctgaatag atcgccacca tttcgcggct aagttccatt gtgctgaccg
    23041 gacaccatac cccgccgcgc catacgtgaa cgatttcact ttccggatgc acacaaacgc
    23101 catcaaagcg ctcggcaagc agctgcgcgc gctcactgtc tgccatttgt gccagttgcg
    23161 tatttttctg ctccggcatg gtaagccctg cggcaatatt ttcacgctca gcattcagat
    23221 agcgccgcca gttttcacac ttctggacgt gcattccttc ggggtaaaaa tttgcgtcct
    23281 gaatatctgc cgccgccagc ttctgaccaa tctttttggt ctccactaaa tccagttctc
    23341 cggcctggta cagccttacg cgctttttcc catccggaac aattttcagc gcatcaagtt
    23401 cggcaagctg atttggccca agccacacag gcggcacatt atcgccggat gcggggccgt
    23461 cctgctcctg ccactgtttt gcatgtgacc acgcatcact acccgcgaaa ataattacct
    23521 ctgtgtcttt gtgttttatt ccgcgtggct gtttttttac gttcggtgcc agtttcattt
    23581 tttacccctg aatacgttaa gcatcttttt tatttcctga atattggcgc gtgctttctc
    23641 cctgctggtt ggtttactgc ggggcgctgc ctgtaccaga gaaaaatcac gccgaaactg
    23701 ataaacaggc atcacgcaat catattcgta gccttcacga cggtaggtta cgcgccgttc
    23761 ctccacgccc ttaatcatta ccgtgccgcc gtactggtcg cggtaaatat caccgcgcat
    23821 gaatttagtg cgagttttgc cactggcagt taagccagaa tatttaagtt tcattatttt
    23881 tattctccgg tgtggggcgc tttattattc tcgtgaattg ccatagcctt attgagttca
    23941 tcaataacag gtgtcaataa tgtctgaaca gcggcaaaaa ttaatgatga atgatcttcg
    24001 tcaccttccg gcacttcaat taatttaatt aacaacgcat tcatttcgcg tgctttaatt
    24061 aatgcgtttt cagagtggat taatacttca aaagggattt tatgcatcac aaattttctc
    24121 ccttattctt ttaatgtcct cattaaggat gtctgtaact tttatcagcg agtttttggc
    24181 aattattttt attgttttaa gttttctttt gtcgtgctcc gactgtgatt ttctctccat
    24241 aatctccacc atgtgggtaa catcaacgag cgcacgtatc agtatttgca ttgcttcttc
    24301 tgctgcgtcc ggtgtggttt tattgcacat gtacccctcc gcattttttt tcgttagaaa
    24361 taagcgttct tctttcctgt tcatcgctca ggaatacgca gacctcaccg ctaaggcgtt
    24421 taagtaagcc gatgattgcc cctgattcgc tgtcggtcat catgctaggg taatcctctg
    24481 ccagtgcgca aataacttcg atttggtggg cgcgttctgc tgcctgttgt agtgtgattt
    24541 cctggctcat aagcctaccc cctgacgaat acgggcagca aataccatca cgcagccagc
    24601 cggagattgc tggcgtgctt cctgttcgct ggtggcctca atggtaatca cgcgcggttg
    24661 tgcagtgctc agggcgataa aacgccagat gtatttattc aggttgtgcg agtcccgccc
    24721 ttgcgggtgt gtggtatgat ttctcatagc tacctcgata ctctcgttat cgttggtggt
    24781 tagaagcccc gttactgctc caacagtgcg gggcttcgtc gtttcaattg ctgaattgca
    24841 tgtatcagca cttgtggtat tcacattaca tttaggtgaa taccatttca agtctttttt
    24901 ggtattcact tttgtattac actgcatccc gttattaatg ggaggtgcaa acatgtccag
    24961 gagttctgtt aacaataagt cacagcaact gaatgccaga tttccacatg aagtagtgag
    25021 tggcattgag gcatccctac agccagggga aactaaagcg aattttatag ttacggctgt
    25081 acgcggtgag atcgcccggc gccaggcaga aggaagtgga gaaaatcccc tggtttcttc
    25141 gctcgatgca ctggcgcagg tggaaaaact cggaatcaaa gccgccgagg agatcgggca
    25201 gctcgtcact gtcgcacgtg aagaactcca gcgccgcaag accaaagaac cagagtaatc
    25261 accatcagcg ccgtggtgta aggtattacg gcgcattgct atgcaggaca acacaatgac
    25321 cgataaagaa ttgaccaaaa cattatcacc ggcacggaaa agacggcgca gaaagataga
    25381 gcatgaatca gaaagattcg cgccatgtgc ttttgccctt gagcaattcc ttaaagagta
    25441 cagggaaaag cgctcattgc aggtatggca acgaactgaa ccagactgat tgcattgccc
    25501 accagccgca aatgtggcat tgttggcaat gctcatgcgt tggggataac gtgtagcttg
    25561 tgtcgagggg ccaccgtagc gggtggcctt tgttttgccc gttattcggc aattgtggcg
    25621 cttctccaca tggttgatat aatcccactg ctcagattca ttttttgcgc agtaggttaa
    25681 ttgttcacaa aggcgctccg gcaacggggc gctttttgtt tttattagtt tgtagaaacc
    25741 tgactcagag ataatgctca tattctgatt gccgtcaggg gtgtaagtta aatttactcc
    25801 ctttttatca tcaaacatct gcaacgctct ggcgttaaca atattggttt cactcccgcc
    25861 agtaaggccg gaaataaccg gaataatttc ggcaaaattt tgcagattct gtttttcagg
    25921 acgaacgaag ccccgccctt gttcgggaga atatccagta ttcatggtta gatctctgta
    25981 ttagtggatg ggtggcggct gtgtgccgcc agcctgatta gtgaactgcc tcgcagctgt
    26041 ccttccatgc cagaacttcg gataaagacc agccaacgga acgaccgccc agcttacgcc
    26101 gtgatgggaa ttgtccggct ttttccaggc ggtaccgaca tgagcggctc aggcctgtaa
    26161 gttgctgaca ttctttttca cgtataaagc gatctgtgct taacacaatt ccccctttgt
    26221 tgtttcttaa agagtcattg ggtggattat tgggttgtgt cggattgtgt cagggtgttt
    26281 gtggaatggc aaacactggc ggcggtcgtt ttacagaagc agggggaatg agaataaaaa
    26341 ctcttttaat tcattatgat gcaaaggcat aaaattttac ttttacgcct tttttacata
    26401 tttttaagag tgattcgcca gtgtataaaa aaacagtaca cctataaaaa tcaaatggtt
    26461 attacgatgg ctgattttta acccgttgtt ccattttgtt ccttgttgtt cgtcgttgtg
    26521 tctcgttgtt tcacgttgtc cgcatcctga aaaatcgcaa aaaaaattat atttctctgg
    26581 ctattggcaa tgtggttaca ttttcatgtg ttcccgccag tatccctaac cgctccgtcc
    26641 acatatccag cgcgtcacgt ttcgcatcca gataacggga atggttatag actcgttgca
    26701 tccctggcat ctgatgacct gtaagctgct ccacgacgtg aggatccacg cctaaatcgt
    26761 tcagcatcgt tgtaaaggtg cgccggatgt catgcagtga ccagtgaggg tgttttagcc
    26821 tcctgtgcgc taatctgccg tactgcgaca cgcttgtttc ctgtttcact tcccccagca
    26881 ataagcccgt gtgcctgttc tgctccacca gctgcgtgac gaacggcagt attgcttccg
    26941 gtatgggccg gaatattgcc accttcgttt tgctgtgttc tttcggcacg gtccagagca
    27001 tttcggtaaa atcccactcg ctgatctccg ataacctcag ttctaccgtc cggcatccga
    27061 aaacaatcag gaggcggatt agtgcgacgt agtaagggga aaatattttt ttgtccagtg
    27121 cctgcaataa ttcgccaagt tctttggtgc ttaagacacg ctcgcttata tccggttttt
    27181 tcccaacgtc cgccacactc atatcatcaa gaacgttgct gattgcatag cgccgcctcc
    27241 ggcagaactt aagcgcctgt ttgcacgtct gtagcaagaa tccggcagta acaggcgttc
    27301 gctttgccac ctggtcaaaa caggccagcc agtgccgtag ctcgcattta tccagcggca
    27361 tagcaccaat gtgctgtatt acgtgattat taaggcgctt tttcagggcg gcataatcca
    27421 cgcggttttc ctttgcgtac gactcaagcc agtaggtgag cgcatcgcca accgttaccg
    27481 gctttaacgc ttcctgtacg gtgtaattaa gctcatgacg tggatttttc ccctctgcca
    27541 gccatgcgcg acactgggcg gctttttccc tggctgattt caggctcaga tcaggataat
    27601 ttcccagctt aatgcgttcc ggtggtgccc cccttcccgt tccggccctg taagtgaaat
    27661 accaggttaa aaggccactg gttgaatgcc tgacgctcag gtttccaccg tcattaagaa
    27721 aggctgtttt ttgggcgggt gtgccgttga ttttcctcag ctgtgtatcg ctcagtttgt
    27781 taagtgctct gctcataatt ttgattccgg tcatcacaat taactacacc attaactaca
    27841 ccgatcgttg cacaaagggc tacaacgtga aacaagctgg aacaaggaaa atcacaaatc
    27901 tgtttataat caaaaacata atgaacaatc tgaaacatta tgaaacggca aaaaacacta
    27961 attgataaaa tatgtccata cttcacgcat tacgttaagc atccgttata atcggttgca
    28021 gataccagcc tgtggatgct taacatggaa taccaactca ctcttaactg gcccgatttt
    28081 cttgaacgtc actggcagaa acgcccggtg gtgttaaaac gcggctttaa taattttatt
    28141 gacccgatct ctccagacga gttggcgggt ctggcgatgg aaagcgaagt tgacagtcga
    28201 ctggtcagtc accaggatgg caaatggcag gtcagccacg gcccgttcga aagctacgat
    28261 catctcggtg aaaccaactg gtcattactg gtacaggcag tgaaccactg gcatgagccg
    28321 accgccgcgc tgatgcgacc gttccgtgaa ctaccggact ggcgtattga tgatctgatg
    28381 atttcttttt ctgtacctgg cggcggcgtc ggcccgcatc tcgatcagta cgacgtgttt
    28441 atcattcagg gtaccggacg tcgtcgctgg cgagtgggcg aaaagctgca aatgaaacag
    28501 cactgcccac atccggatct gttacaggtc gatccgttcg aagccatcat cgatgaagag
    28561 ctggagcctg gtgatattct ttatattccg ccaggattcc cgcatgaagg ctacgcgctg
    28621 gaaaatgcga tgaactattc cgtgggcttt cgcgcgccaa atacgcggga actgattagt
    28681 ggatttgccg attatgtgct gcaacgtgaa ctgggcggca actactacag cgatcctgat
    28741 gttccacctc gcgctcatcc tgcggatgtt ctgcctcaag agatggataa actgcgtgag
    28801 atgatgctcg aattgatcaa ccagccggaa cactttaagc aatggtttgg cgagtttata
    28861 tcccagtcac gtcatgaact ggatatcgcg ccgccggaac cgccttatca gccagatgaa
    28921 atctacgatg cgctgaaaca aggtgatgtg ctggtgcgcc tgggtggtct gcgcgtattg
    28981 cgcattggcg acgacgtgta tgccaatggt gagaagatcg attccccgca ccgtccggca
    29041 ctggatgcac tcgccagcaa cattgcgctg actgcggaga attttggcga tgcgctggaa
    29101 gatccgtcat tcctcgcgat gctcgcggcg ctggtcaata gcgggtattg gttcttcgaa
    29161 gggtaagttt ggatttaagc cggatgcggc atcacatgcc gcatcccttt tcgcttactt
    29221 ccgttgcgcc gttaactcgg caatacggac gatcacctgc accgcttttt ccataccttc
    29281 cagagtcaca aactcatgct taccatgata gttgtaaccg ccagtgaaca agttcgggca
    29341 cggtaatccc ataaacgaca actgcgcgcc gtcggtaccg ccgcggatcg gtttcagttc
    29401 cggttcaata tcgcagtcac gcatcgcctg ctgggcgata tcgagaatat gcggatgctc
    29461 aaccactttc tcgcgcatat tgtagtaact gtcttcaatc accagttcaa tgtagcaatc
    29521 aggatgtaac cctttgccca cttttttggc gatctccatc attttacatt tacgcgcttc
    29581 aaactgttta cggtcgaaat cacggatgat gtagtgcata tcggcccgtt caacggtgcc
    29641 tttcatgccc gccaggtgat agaaaccttc atagccttct gtcatttccg ggctttcatc
    29701 cgccggaact tccgcatgaa tacgtgccgc cagcgacagc gcatttacca tcactccttt
    29761 cgccgtgccc ggatgaacat tgttaccgac aattttgata ttgaccgatg cggcgttgaa
    29821 gttttcaaac tccagttcgc ctacgccacc accgtcaaca gtgtaagccc agcgggcatc
    29881 gaaggcatca acatcaaaat gtttcgcccc tttgcccact tcttcatccg gggtaaaggc
    29941 gacgcgaata tcaccatgcg gaatgttttt ctgttgcaat accgccagcg cggtcatgat
    30001 ttctgcaata cctgctttgt catcggcacc taacaaggtt ttaccatcgg tggtaatcaa
    30061 cgtctgaccc agtagctgat gcagcaccgg gaacataacc ggtgataaaa cttcatcgcc
    30121 gatacccagc gcaatatcgc caccgcgata gttttcaaca atttgcggat taacattttt
    30181 gccgctgcaa tccggtgagg tatccacatg agaaataaag ccaatcgccg ggatatcgcc
    30241 agggacgtta gccggtaacg tcgccatcaa agtgcccttc tcacttaagg tcacattgat
    30301 aagccccatt tcttcgagct gctctttcag cagatgcaat aacttccatt ggccttccgt
    30361 gctgggaacc tgtctcaccc ctgcttttga ttgggtatcc agagacacgt agttcaaaaa
    30421 tcgctcaagt agtttatcca tgtagtcacc ctcacttttt gtgacaacat tattaagaag
    30481 caagaaaaga caaatattgc gtcaggtcac ttttacccct gcaagcggga atatttatca
    30541 gcattacctt aatgaatata aagctaagcc agtaattcac aacaaagatt ggcgattcaa
    30601 gcggtttgcc gtagaattac cgccctcatt aagagtcacc aaggtggtta accacaaacc
    30661 ccgcatcggt aagccatccg ttgcgtttac atgggacaga gtaaaaaatt gaataaacaa
    30721 ccgagttcgc tttcaccgct ggtgcaattg gcgggaattc gcaaatgctt tgatggtaaa
    30781 gaggtcattc cccagctgga tctgactatc aacaatggcg agttcctcac gctgcttggc
    30841 ccttctggct gcggtaaaac aaccgttctt cgcctgattg caggtctgga aactgttgat
    30901 tccggacgca tcatgctgga taacgaggac atcacccacg ttccggcgga aaaccgctat
    30961 gtgaacactg ttttccaaag ctacgcactt ttcccccaca tgaccgtgtt cgaaaatgtg
    31021 gcctttgggt tgcgcatgca aaaaaccccc gctgctgaaa ttacgccccg cgtgatggaa
    31081 gccctgcgga tggtgcaact ggaaaccttc gctcaacgta aaccgcatca gctctctggt
    31141 ggtcaacagc aacgcgtcgc cattgctcgc gcggtggtta acaagcctcg tctgttgttg
    31201 ctggatgagt cgctctcagc gctggattac aaactgcgta agcaaatgca gaacgagctg
    31261 aaagcgttac agcgtaagct tggcattaca ttcgtcttcg tgactcacga ccaggaagaa
    31321 gcactcacca tgtcagacag gattgtggtg atgcgcgagg gtcgcattga gcaagacggc
    31381 acgccgcgtg aaatctacga agagccgaaa aacctgtttg ttgccggctt cattggcgaa
    31441 attaatatgt ttaacgccac ggtgatcgag cgactcgacg agcagcgcgt acgcgccaac
    31501 gttgaaggcc gcgaatgtaa tatctacgtt aacttcgccg ttgaaccggg gcaaaaactg
    31561 catgttctgc tgcgcccgga agacttacgt gttgaagaga ttaacgacga caaccacgct
    31621 gaagggctga ttggttacgt tcgtgagcgt aactacaaag gcatgacgct ggagtcggtt
    31681 gttgaactgg aaaatggcaa gatggtgatg gtcagcgaat tcttcaatga agacgatcct
    31741 gactttgacc actctctcga ccaaaaaatg gccattaatt gggtagaaag ctgggaggtc
    31801 gtactggctg atgaagaaca caagtaagtt ccagaatgta gtgattgtca ctattgtcgg
    31861 ttggcttgtg ttgtttgtct ttctgcccaa cctgatgatc attggcacca gctttttgac
    31921 ccgcgacgac gccagtttcg tcaaaatggt cttgacgctg gataactaca cgcgtctgct
    31981 cgatccgctc tattttgaag tgctattgca ctcgctgaat atggcgctga tcgccaccct
    32041 cgcctgcctg gtgctgggct atccatttgc ctggtttctg gcgaagctgc cacacaaggt
    32101 gcgtccgctg ctgctgtttc tgctgattgt tccgttctgg accaactcat tgattcgtat
    32161 ctacgggctg aaaattttcc tcagcaccaa aggctatctc aacgagtttt tgctctggct
    32221 gggcgttatc gacacaccaa tccgtatcat gttcacgccc agtgcggtga ttatcggtct
    32281 ggtttacatt ctgctgccgt ttatggtgat gccgctgtac tccagtatcg aaaaactgga
    32341 taagccgttg cttgaggcgg cgcgcgatct cggtgccagc aagttacaga cttttatccg
    32401 catcattatt ccactgacga tgccggggat tattgccgga tgtctgctgg tgatgctgcc
    32461 agcgatgggc ctgttctatg tgtccgacct gatgggcggt gcgaaaaacc tgctgatcgg
    32521 taacgtcatc aaggtacagt tcctcaatat tcgtgactgg ccgtttggtg cagccaccag
    32581 cattacgctg actatcgtaa tgggcctgat gttgctggtt tactggcgcg cttctcgttt
    32641 gctgaataag aaggtgagcg aattagatga ttaatcattt atattcaatg cattaagttt
    32701 gtttttgagt ggttttgccg tttaaggtaa cggcgttata gatcctatca aaatcaatca
    32761 attccattct ggttttggag aaagattttt cgagagcttc ggtctttaac taaaactgat
    32821 tgcgtataac cccaataccc ctccccgact atctgaatgg tcggggaggc acttcacgca
    32881 caaaatatca tccctgcgcc gttgattact ctgcaggtga agtcggccac tcaatatcag
    32941 gtgcagttga tgtatcaaca cggttcagca acac
//
LOCUS       DAJVUN010000025        32825 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.025, whole genome shotgun sequence.
ACCESSION   DAJVUN010000025 DAJVUN010000000
VERSION     DAJVUN010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32825
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.025"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(177..2498)
                     /locus_tag="OQQ76_000946"
     CDS             complement(177..2498)
                     /locus_tag="OQQ76_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HCS1967531.1"
                     /translation="MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEI
                     TGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELED
                     LYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALD
                     GARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTV
                     PSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRK
                     GVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDP
                     GLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELVAIGNGTASR
                     ETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
                     QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTR
                     VAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAS
                     TVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEK
                     PGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISS
                     LSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQ
                     NNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR"
     gene            complement(2595..3071)
                     /gene="greB"
                     /locus_tag="OQQ76_000947"
     CDS             complement(2595..3071)
                     /gene="greB"
                     /locus_tag="OQQ76_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312275.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HCS1967532.1"
                     /translation="MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSE
                     NADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHR
                     FRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYVKP"
     gene            3299..4018
                     /gene="ompR"
                     /locus_tag="OQQ76_000948"
     CDS             3299..4018
                     /gene="ompR"
                     /locus_tag="OQQ76_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014646135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HCS1967533.1"
                     /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL
                     TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY
                     IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP
                     LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH
                     PRYIQTVWGLGYVFVPDGSKA"
     gene            4015..5367
                     /gene="envZ"
                     /locus_tag="OQQ76_000949"
     CDS             4015..5367
                     /gene="envZ"
                     /locus_tag="OQQ76_000949"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     EnvZ"
                     /protein_id="HCS1967534.1"
                     /translation="MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQ
                     QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWA
                     QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL
                     FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR
                     AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE
                     CNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHP
                     LSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVR
                     GDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVSVTRAQGTTKEG
                     "
     gene            complement(5443..7065)
                     /gene="pckA"
                     /locus_tag="OQQ76_000950"
     CDS             complement(5443..7065)
                     /gene="pckA"
                     /locus_tag="OQQ76_000950"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HCS1967535.1"
                     /translation="MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGY
                     ERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW
                     QHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEEL
                     AGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSM
                     MNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDD
                     GVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRV
                     SYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA
                     GTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRI
                     SIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQE
                     KAETLAKLFIDNFDKYTDTPAGAALVAAGPKL"
     gene            7443..9167
                     /locus_tag="OQQ76_000951"
     CDS             7443..9167
                     /locus_tag="OQQ76_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HCS1967536.1"
                     /translation="MDNVELSPATRWGMIATGLLQGLVCYLLIAWLAGKNHSWIVYGV
                     PATVAFSSVLLFSVISFKQKRLWGWLALVFIATTGMSGWLKWQTDGMNPWRAEKAIWD
                     FGCYLLLMAMLLLPWIQQSLRIRNGSSRYSYFYQSVWHNVLILLVIFLANGLTWLVLL
                     LWGELFKLVGIKFFNTLFFATDWFMYLTLGLVTALAVILARTQSRLIDSIQKLFTLIA
                     TGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASL
                     PWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGALAVLVLLVWSLGY
                     FVSIVWRNGQNPLVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKN
                     TPDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQEQVSEKV
                     LAENVLIAPGSVKPDATFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAF
                     NDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTRPKAWRDLTVDGE
                     TLEINLSK"
     gene            complement(9302..10180)
                     /gene="hslO"
                     /locus_tag="OQQ76_000952"
     CDS             complement(9302..10180)
                     /gene="hslO"
                     /locus_tag="OQQ76_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417860.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HCS1967537.1"
                     /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNV
                     LAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENA
                     DLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGD
                     VDGKPATGGMLLQVMPAQNAQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEV
                     TVYDPQDVEFKCTCSREHCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMD
                     IAEIRNNASPADPQVH"
     gene            complement(10205..10606)
                     /gene="hslR"
                     /locus_tag="OQQ76_000953"
     CDS             complement(10205..10606)
                     /gene="hslR"
                     /locus_tag="OQQ76_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HCS1967538.1"
                     /translation="MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK
                     PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMAMAR
                     KLNALTMPHPDRRPDKKERRDLLRFKHGDSE"
     gene            complement(10617..11285)
                     /gene="yrfG"
                     /locus_tag="OQQ76_000954"
     CDS             complement(10617..11285)
                     /gene="yrfG"
                     /locus_tag="OQQ76_000954"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP/IMP nucleotidase"
                     /protein_id="HCS1967539.1"
                     /translation="MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNG
                     VTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFL
                     EALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAE
                     ATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLI
                     PSLM"
     gene            complement(11350..13485)
                     /gene="igaA"
                     /locus_tag="OQQ76_000955"
     CDS             complement(11350..13485)
                     /gene="igaA"
                     /locus_tag="OQQ76_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular growth attenuator protein IgaA"
                     /protein_id="HCS1967540.1"
                     /translation="MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRK
                     LTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGIST
                     DDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETR
                     GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFF
                     CLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQE
                     QINNISLGIIDLVYPAHWQPYIAQDLDQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPL
                     QHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRV
                     GDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATAL
                     TEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLK
                     NALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARA
                     AQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNA
                     EGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQR
                     HRTRMMEIQAYYESCLNPQLITPSESLIE"
     gene            13810..14370
                     /gene="nudE"
                     /locus_tag="OQQ76_000956"
     CDS             13810..14370
                     /gene="nudE"
                     /locus_tag="OQQ76_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HCS1967541.1"
                     /translation="MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRP
                     TNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGF
                     GANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLE
                     DPDFNEARNVSALFLVREWLKGQGRV"
     gene            complement(14535..17087)
                     /gene="mrcA"
                     /locus_tag="OQQ76_000957"
     CDS             complement(14535..17087)
                     /gene="mrcA"
                     /locus_tag="OQQ76_000957"
                     /EC_number="2.4.1.129"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312265.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase/peptidoglycan
                     DD-transpeptidase MrcA"
                     /protein_id="HCS1967542.1"
                     /translation="MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRL
                     QIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIF
                     RAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEIL
                     ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRA
                     VARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRY
                     GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNN
                     KITDTLKALPTYGPLLPAAVTSANPQGATAMLADGSTVALSMEGVRWARPYRSDTQQG
                     PTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQ
                     SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWQPKNSP
                     PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA
                     SFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT
                     QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFL
                     IKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW
                     IGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG
                     IVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF"
     gene            17207..17986
                     /gene="hofM"
                     /locus_tag="OQQ76_000958"
     CDS             17207..17986
                     /gene="hofM"
                     /locus_tag="OQQ76_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofM"
                     /protein_id="HCS1967543.1"
                     /translation="MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDII
                     KDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWL
                     SGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
                     ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDS
                     VAICGEGGFDPWEAVSVRQPLLPPPGGDFAIALGLALGKAY"
     gene            17986..18525
                     /gene="hofN"
                     /locus_tag="OQQ76_000959"
     CDS             17986..18525
                     /gene="hofN"
                     /locus_tag="OQQ76_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofN"
                     /protein_id="HCS1967544.1"
                     /translation="MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTG
                     SAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLREQRSQRQRQRQFTRDWQSALEAL
                     AALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
                     GRWQFEYQLTRKVSDEHVL"
     gene            18509..18949
                     /gene="hofO"
                     /locus_tag="OQQ76_000960"
     CDS             18509..18949
                     /gene="hofO"
                     /locus_tag="OQQ76_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofO"
                     /protein_id="HCS1967545.1"
                     /translation="MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDAL
                     IRLRASHHQQWATLYRLVDTTPFSEEKTLPFSPLDFQLPGAQLVSWHPSAQGGELALK
                     TLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG"
     gene            18939..19343
                     /gene="hofP"
                     /locus_tag="OQQ76_000961"
     CDS             18939..19343
                     /gene="hofP"
                     /locus_tag="OQQ76_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofP"
                     /protein_id="HCS1967546.1"
                     /translation="MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMV
                     GRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQ
                     GDTNEAMDSRTTVDADTRRTGGKAAKSDADGG"
     gene            19255..20493
                     /gene="hofQ"
                     /locus_tag="OQQ76_000962"
     CDS             19255..20493
                     /gene="hofQ"
                     /locus_tag="OQQ76_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA uptake porin HofQ"
                     /protein_id="HCS1967547.1"
                     /translation="MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQE
                     KLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIA
                     RQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMIVDKRTNRLLLRDN
                     KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT
                     LGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK
                     QGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQA
                     DGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDG
                     KEYERRELVVFITPRLVSSE"
     gene            20894..21415
                     /gene="aroK"
                     /locus_tag="OQQ76_000963"
     CDS             20894..21415
                     /gene="aroK"
                     /locus_tag="OQQ76_000963"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004709337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HCS1967548.1"
                     /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG
                     ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY
                     LETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK
                     VVANQIIHMLESN"
     gene            21472..22560
                     /gene="aroB"
                     /locus_tag="OQQ76_000964"
     CDS             21472..22560
                     /gene="aroB"
                     /locus_tag="OQQ76_000964"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HCS1967549.1"
                     /translation="MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNET
                     LAPLYLDKVRGVLEQAGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVAL
                     GGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAANHPLGKNMIGAFYQP
                     ASVVVDLDCLKTLPPRELVSGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYC
                     IRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAA
                     RTSERLGQFSSAETQRIITLLKRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEIRLIL
                     PLAIGKSEVRSGVSHELVLNAIADCQSA"
     gene            22652..23938
                     /gene="damX"
                     /locus_tag="OQQ76_000965"
     CDS             22652..23938
                     /gene="damX"
                     /locus_tag="OQQ76_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DamX"
                     /protein_id="HCS1967550.1"
                     /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDI
                     ELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQ
                     YMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPG
                     TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVA
                     VNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRLARQQAVIEPKKPQATVKTEP
                     KPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA
                     GNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGV
                     YASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK"
     gene            24045..24881
                     /gene="dam"
                     /locus_tag="OQQ76_000966"
     CDS             24045..24881
                     /gene="dam"
                     /locus_tag="OQQ76_000966"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1967551.1"
                     /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN
                     TDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQ
                     DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF
                     YCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE
                     RHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPA
                     KK"
     gene            24899..25576
                     /gene="rpe"
                     /locus_tag="OQQ76_000967"
     CDS             24899..25576
                     /gene="rpe"
                     /locus_tag="OQQ76_000967"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCS1967552.1"
                     /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP
                     NLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT
                     LQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE
                     VRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE
                     LAKVSHE"
     gene            25569..26327
                     /gene="gph"
                     /locus_tag="OQQ76_000968"
     CDS             25569..26327
                     /gene="gph"
                     /locus_tag="OQQ76_000968"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HCS1967553.1"
                     /translation="MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE
                     RVITWIGNGADVLMERALAWARQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYY
                     SEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGG
                     DDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE
                     AIDLSQPDVIYQSINDLLPALGLPHSENQESKND"
     gene            26320..27324
                     /gene="trpS"
                     /locus_tag="OQQ76_000969"
     CDS             26320..27324
                     /gene="trpS"
                     /locus_tag="OQQ76_000969"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HCS1967554.1"
                     /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ
                     HAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG
                     ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI
                     AQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK
                     KIKRAVTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE
                     VADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAKP
                     "
     gene            27593..28498
                     /locus_tag="OQQ76_000970"
     CDS             27593..28498
                     /locus_tag="OQQ76_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709156.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967555.1"
                     /translation="MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELATECRSSVG
                     LTQAVLKTLESSGAIRIERRGRNGSYLVEMDNKALLSHVDINNVVCAMPLPYTRLYEG
                     LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE
                     LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESL
                     QRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTQVDDYPMQQLL
                     RAVVDKHALLAHQQRVVSGEQEPSY"
     gene            28515..28877
                     /locus_tag="OQQ76_000971"
     CDS             28515..28877
                     /locus_tag="OQQ76_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417841.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HCS1967556.1"
                     /translation="METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTM
                     AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEE
                     GYLLANLYGLWMAANEEV"
     gene            28961..30124
                     /locus_tag="OQQ76_000972"
     CDS             28961..30124
                     /locus_tag="OQQ76_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfX family PLP-dependent enzyme"
                     /protein_id="HCS1967557.1"
                     /translation="MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKR
                     LIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLSVAHQ
                     GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLY
                     PGQESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQAR
                     DQLAKSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPANQQGDQSERIA
                     MLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITETNLKTVDDSSIDYTL
                     SLAGEFPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPKIVGRYDSLGNSLGA"
     gene            30124..31350
                     /locus_tag="OQQ76_000973"
     CDS             30124..31350
                     /locus_tag="OQQ76_000973"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HCS1967558.1"
                     /translation="MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQ
                     LPTLEKLGLINALGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRM
                     PFCDVIDRVEQALVSAGWQVERRGDELQFLWVNQAVAIGDNLEADLGQVYNITANLSV
                     ISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYD
                     NGFQVVHMGYGVDKKVQVPQKLYEAGVPTVLVGKVADIVSNPYGVSWQNLVDSQRIMD
                     ITLDEFNTHPTAFICTNIQETDLAGHAEDVARYAERLQVVDRNLARLVDAMQPDDCLV
                     VMADHGNDPTIGHSHHTREVVPLLVYQQGLAATQLGVRTTLSDVGATVCEFFRAPPPQ
                     NGRSFLSSLRFAGDTL"
     gene            31347..32225
                     /locus_tag="OQQ76_000974"
     CDS             31347..32225
                     /locus_tag="OQQ76_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase-related protein"
                     /protein_id="HCS1967559.1"
                     /translation="MSFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLM
                     TRGVRNVIEMTNRYMGRNAQFMLGVMRETGINVVACTGYYQDAFFPEHVVTRSVQELA
                     QEMVDEIEQGIDGTELKAGLIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTS
                     FSTMGLEQLALLQAHGVDLARVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYP
                     DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQ
                     ADVDVMLRETPSQFFQ"
     gene            32236..32589
                     /locus_tag="OQQ76_000975"
     CDS             32236..32589
                     /locus_tag="OQQ76_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417837.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2620 domain-containing protein"
                     /protein_id="HCS1967560.1"
                     /translation="MKKIGVAGLQREQIKKTIEATAPGSFEVFIHNDMEAAMKVKSGQ
                     LDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSV
                     EHVEHAIPMLINHLK"
     gene            32601..>32825
                     /locus_tag="OQQ76_000976"
     CDS             32601..>32825
                     /locus_tag="OQQ76_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967561.1"
                     /translation="MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYM
                     NRREAGSIAFGLSIGFVASVGISFTLKTGLL"
BASE COUNT         7627 a         8254 c         9002 g         7942 t
ORIGIN      
        1 taattaaggt ttcagttgtt aatgaagtga taaatattgc cggaatatat tatgagtttg
       61 gttgtggaat aaaaaggccg gagatattct ccggcacttt tatgtcaggc aaggcgttcg
      121 ttgccagatg cggcgtgaac gccttatcgc gcaggtttag gggccagtcc gggcgtttaa
      181 cgttttttgc ccattgccgc cgccagcgca tccatcatcg cgctattacc ggcaggctgc
      241 gcttcacgac cgcgtggttt ggctgccggg cggttgtttt gcgggcgttc attaccgccg
      301 ccgcgacggg cgttggtttc gccaggctgc tcgtccagac gcatagtcag ggcgatacgt
      361 ttacgctgaa gatccacttc cagcactttc accttcacaa tgtcgcccgc tttcaccacg
      421 gtatgcggat cttccacaaa cttgttcgac aatgaagaga tgtgaaccag gccgtcctga
      481 tgcacgccga tatcgacaaa cgcgccaaag ttggtgacgt tggtcaccgc accttcgagg
      541 atcatacccg gttgcaggtc gttcattgtc tcgacgccat cggcaaactg agcggtttta
      601 aattccggac gcggatcgcg acccggtttt tccagctctt tgatgatgtc agttactgtc
      661 ggcacaccga atttttcatc agtaaagtca gacgctttca ggttacgcag ttcgctgctg
      721 ttacccatca gatctttcag tgcctgctgt gttgctgcca gaatgcgttc caccaccgga
      781 taggcttccg ggtggacggt agaagcatcc agcgggttat caccgtggtt aatgcgcaag
      841 aagcccgcgc actgctcgaa ggctttcggc cccagacggc tgactttcag cagttgctga
      901 cggttctgga actggccgtt ctcatcgcgc caggccacga tgttttgcgc catcatgcgc
      961 gtcaggcccg ccacgcgggt taacagcgga acagaagcag tgttgagatc gacgccaacg
     1021 gcgtttacgc agtcttctac tactgcgtcc agtttgcggg ccagttgcgt ctggctgacg
     1081 tcatgctgat actgacctac gccgatagat ttcggatcga ttttcaccag ctccgccagc
     1141 ggatcctgca aacggcgggc gatagacacc gcgccacgca gcgaaacgtc gagatccggg
     1201 aactcctgcg ctgccagctc ggaagctgag taaaccgacg cgccagcttc gctgacgatc
     1261 actttctgtg cggtcacttt cgggaactgc ttctgcacgt cgagatagaa acgttcagtt
     1321 tcgcgggaag ctgtaccgtt gccgatcgcc accagttcaa cgttatgttt ttcacacaag
     1381 gcagcaacgg tcatcgctgc ttttgcggct tgtccggtgt gcgggtaaat ggtatcggtc
     1441 gctaccagtt tgccagtggc atcgaccacc gccactttta ccccagtacg cagacccgga
     1501 tcgaggccca tcgttgcacg cagtccggca ggggccgcca tcagcagatc gtgcaggtta
     1561 cgggcaaaga cgttgattgc ttcatcttcc gcgcgttcgc gcacggtacc catcagttcg
     1621 gtttccagat gcatcagcac cttgatgcgc caggtccagc tcactacgcc tttgcgccag
     1681 ctatccgccg gggcattgtt caggcgcagg ccaaggtgat ccatgatgat ttgctcgcaa
     1741 tagctctctt tgggcggctc atcgaactgc ggatcggcat tcagcgaaag ctggagtacg
     1801 ccttcgttac gcccacggaa catcgccagc gcgcggtgag aaggcaccgt ggacaacggt
     1861 tcgtgatgat cgaaatagtc gcggaatttc gccccttcct cttctttacc gctcaccacc
     1921 gtagaaacca aatgcgcgtt cttccacaga taatcacgca ctttcgccag cagcgcggca
     1981 tcttcggcaa accgttccat caggatatag cgcgcgccat ccagcgcggc tttggtatct
     2041 gccacgcctt tatcggcatc aacatattgt gcagcggcga cttctggcgt gtgtgacgga
     2101 tcgctccaca gcaggtcagc caacggctca agccctgctt caatggcgat ttgcccgcgg
     2161 gtgcggcgtt taggtttgta gggcaggtag aggtcttcga gttcggtttt gcttagggtg
     2221 gcgttgatgg ccttcgccag atcatcggtg agtttgcctt gctcggaaat ggacttgagg
     2281 atcgcctgac gtctctcttc cagctcgcgc agatagctca gacgcgtttc cagattacgc
     2341 agctgcgtgt catccagacc gccggtgatt tccttacgat aacgtgcgat aaacggcacg
     2401 gtattccctt cgtcaagcag gcgaacggca gcgtcaacct gttccgggcg cgcctgaatt
     2461 tcacccgcaa taatgcggca gaacgaatca ttcatcatgg tttgagttca tcttttcgga
     2521 tcaaaaatca ggggatagtt atacggactg gctggcaaaa atgccagcca tcggcaggag
     2581 gttaagactc ttccttacgg tttcacgtac tcgatagcat taacatacca gctcgcttcc
     2641 ccggcagggg tattcaccac cgccagatcg ccgacttctt ttttcagcaa tgcgcgggcc
     2701 atcggggaat cgatagagat gtaatcttta cggccaaaaa tttcatcgta gccgacaata
     2761 cggaaacggt gagtcacgcc atcgtcgttt tcaatctcca cccacgcgcc aaaaaagact
     2821 ttgccttcct gctgagggga gtaatcgacg attttgagat tttccatgca tttagtgaga
     2881 tagcgcacgc gacggtcgat ttcacgcaga cgctttttat tatactgata gtcagcattt
     2941 tcgctgcggt cgcccagact tgcggcccag gtcacctttt ttgtgacctc cgggcgttct
     3001 tcacgccaga gataattaag ctcttgtttg agtttttcat acccttcccg ggtaaccagg
     3061 ggcgttttca tctcgttgat tccctttgtc tgtttgataa tgcgcacatt gggtataacg
     3121 tgatcatatc aacagaatca ataatgtttc gccgaataaa ttgtatactt aagctgctgt
     3181 ttaatatgct ttgtaacaat ttaggctgaa attcatacca gatttagctg gtgacgaacg
     3241 tgagcttttt taagaataca cgcttacaaa ttgttgcgaa cctttgggag tacaaacaat
     3301 gcaagagaac tacaagattc tggtggtcga tgacgacatg cgcctgcgtg cgctgctgga
     3361 acgttatctc accgaacaag gcttccaggt tcgaagcgtc gctaatgcag aacagatgga
     3421 tcgcctgctg actcgtgaat ctttccatct tatggtactg gatttaatgt tacctggtga
     3481 agatggcttg tcgatttgcc gacgtcttcg tagtcagagc aacccgatgc cgatcattat
     3541 ggtgacggca aaaggggaag aagtggaccg tatcgtaggc ctggagattg gcgctgacga
     3601 ctacattcca aaaccgttta acccgcgtga actgctggcc cgtattcgtg cggtgctgcg
     3661 tcgtcaggcg aacgaactgc caggcgcacc gtcacaggaa gaggcggtaa ttgctttcgg
     3721 taagttcaaa cttaacctcg gtacgcgcga aatgttccgc gaagatgagc cgatgccgct
     3781 caccagcggt gagtttgcgg tactgaaggc actggtcagc catccgcgtg agccgctctc
     3841 ccgcgataag ctgatgaacc ttgcccgtgg tcgtgaatat tccgcaatgg aacgctccat
     3901 cgacgtgcag atttcgcgtc tgcgccgcat ggtagaagaa gatccagcgc atccgcgtta
     3961 cattcagacc gtttggggcc tgggctacgt ctttgtaccg gacggctcta aagcatgagg
     4021 cgattgcgct tctcgccacg aagttcattt gcccgtacgt tattgctcat cgtcaccttg
     4081 ctgttcgcca gcctggtgac gacttatctg gtggtgctga acttcgcgat tttgccgagc
     4141 ctccagcagt ttaataaagt cctcgcgtac gaagtgcgta tgttgatgac cgacaaactg
     4201 caactggagg acggcacgca gttggttgtg cctcccgctt tccgtcggga gatctaccgt
     4261 gagctgggga tctctctcta ctccaacgag gctgccgaag aggcaggtct gcgttgggcg
     4321 caacactatg aattcttaag ccatcagatg gcacagcaac tgggcggccc gacggaagtg
     4381 cgcgttgagg tcaacaaaag ttcgcctgtc gtctggctga aaacctggct gtcgcccaat
     4441 atctgggtac gcgtgccgct gaccgaaatt catcagggcg atttctctcc gctgttccgc
     4501 tatacgctgg cgattatgct attggcgata ggcggggcgt ggctgtttat tcgtatccag
     4561 aaccgaccgt tggtcgatct cgaacatgct gctttgcagg tcggtaaagg gattattcca
     4621 ccgccgctgc gtgaatatgg cgcgtccgag gtacgttcgg ttacccgcgc ctttaaccat
     4681 atggcggctg gtgttaagca actggcggat gaccgcacgt tgctgatggc gggggtaagt
     4741 catgacttac gcacgccgct gacgcgtatt cgcctggcga ccgagatgat gagcgaacag
     4801 gatggctacc tggccgaatc gatcaataaa gatatcgaag agtgcaacgc catcattgag
     4861 cagtttatcg actacctgcg caccgggcag gagatgccga tggaaatggc ggatctcaac
     4921 gcagtactcg gtgaggttat tgctgccgaa agtggctatg agcgggaaat tgaaaccgcg
     4981 ctttaccccg gcagcattga agtgaaaatg cacccgctgt cgatcaaacg cgcggtggcg
     5041 aatatggtgg tcaacgccgc ccgttacggc aatggctgga tcaaagtcag cagcgggacg
     5101 gagccgaatc gcgcctggtt ccaggtggaa gatgacggtc cgggaattgc gccggaacaa
     5161 cgtaagcacc tgttccagcc gtttgtccgc ggcgacagtg cacgcaccat tagcggcacg
     5221 ggattagggc tggcaattgt gcagcgtatc gtggataacc ataacgggat gctggagctt
     5281 ggcaccagcg agcggggcgg gctttccatt cgcgcctggc tgccagtgtc ggtaacgcgg
     5341 gcgcagggca cgacaaaaga agggtaaata aacgggaggc gaaggtgcct cccgttttgc
     5401 tttctataag atactggata gatattctcc agcttcaaat cattacagtt tcggaccagc
     5461 cgctaccagc gcggcacccg caggggtgtc ggtgtattta tcgaagttgt cgataaacag
     5521 tttcgccagg gtttcggctt tttcctgcca ctgttccgga gaagcgtagg tgttacgcgg
     5581 atcgagaatc ttcgtgtcta cgcccggcag ttcggttggg atcgccaggt taaacatcgg
     5641 cagagtgaag gtttctgcat tatccagcga accgttgagg atggcgtcga taatggcgcg
     5701 ggtatcttta atcgagatac gtttgcctgt gccgttccag ccagtgttaa ccagataagc
     5761 ctgcgcgccc gccgcctgca tacgtttcac cagcacttct gcgtactgag tcgggtgcag
     5821 cgacaggaat gccgcgccga agcaagcgga gaaggttggc gtcggttcgg tgatgccacg
     5881 ctcagtaccg gccagtttgg cggtgaagcc agagaggaag tgatactggg tttgatcggc
     5941 agtcaggcga gaaaccggcg gcaacacgcc gaaagcatca gcagtcagga agataacctt
     6001 agtcgcgtgg cccgctttgg aaaccggctt aacgatgtta tcgatgtgat agattggata
     6061 agaaacgcgg gtgttctcgg tttttgaacc atcatcaaag tcgatagtgc catcttcacg
     6121 cacggtgacg ttttccagca gcgcatcacg acggatagcg ttgtagattt caggttccgc
     6181 ttctttcgac agtttgatag tttttgcgta gcagccgcct tcgaaattaa acacgccgtc
     6241 atcgtcccag ccgtgttcgt catcgccaat caggcggcgt ttcgggtcgg tggaaagggt
     6301 ggttttaccg gtgccggaaa ggccgaagaa caccgcaaca tcgcctttct cgccaacgtt
     6361 ggcggagcag tgcatagaag cgataccttt cagcggcagc aggtagttca tcatcgagaa
     6421 catccctttc ttcatttcgc cgccgtacca ggtgccgcca atcagctgca tgcgctcggt
     6481 caggttaaac gccacgaagt tttcggagtt cagaccctgt tctttccact gcgggttagt
     6541 gcacttcgcg ccgttcataa cgataaagtc tggtttgaaa cctgccagct cttcatcgct
     6601 cgggcgaata aacatgtttt tgacaaaatg cgcctgccag gccacttcgg tgatgaaacg
     6661 gacggaaaga cgagtatccg ggttcgcacc acagaaagcg tcgacaacga acagacgttt
     6721 gccggaaagc tgcctggtca ccaggccttt cagatgctgc caggtttccg gagagagagg
     6781 tttgttgtcg ttcttacctt tgcctttgtc tgcccaccag aaagtatcgc gagtggtatc
     6841 gtcacggacg atatacttat cttttggtga acgaccggtg aagatcccgg tatcgacggc
     6901 aacggcaccc agattagtta acaccccgcg ctcataacct gtcaggctcg gatcgagctc
     6961 ttcctgatac agcaggtcgt agcttgggtt gtaaacgata tcatgtacgt cactgatacc
     7021 ataagcctcg agttcttgcg gggtcaaacc attgttaacg cgcatttcac tgctccttag
     7081 ccaatatgta ttgcctgaat agtaaagtct ttttggggtg ttaaccgcga caaggctcat
     7141 agatttacgt atctggagaa attcatattt gacaaaaaac tccgtgattc ctgtcacgaa
     7201 acggttgcta ttatcgcaga aatagcattt taggtgtgga aaatgttctc aaaaggttaa
     7261 atcttggttt atatggcggg aatattgtga gtggaatcgc attccttaat gaaattgatg
     7321 caaattcaat cggtaaagta tcgattcacc acgctaactt tttttgatta ttttctgaaa
     7381 aaagcaaaat actactgccc ggatgcgata attaacccac cttttgattc tggataacca
     7441 acatggataa cgttgaactt tcaccggcaa cacgctgggg gatgattgct accggattac
     7501 ttcaggggct ggtttgctac ctgttgatcg cctggcttgc cggaaaaaat cacagttgga
     7561 ttgtttatgg cgtgcctgcg accgttgcgt tttcatccgt tttactcttc tccgtgatct
     7621 cttttaaaca gaagcgcctt tggggatggc tggcgctggt gtttattgcc acgacaggga
     7681 tgagcggttg gctgaagtgg caaactgatg gcatgaaccc ctggagagct gaaaaggcga
     7741 tttgggattt tggctgctat ctgctgttga tggcaatgtt gttgctaccg tggatacaac
     7801 aaagccttcg tatccgcaat ggcagtagcc gctatagcta cttttaccag tcagtatggc
     7861 ataacgtact tatattactg gtgatttttc tcgccaatgg cctgacgtgg ctggtgcttt
     7921 tactgtgggg tgagttgttt aaacttgttg gcatcaagtt tttcaatacg ctcttttttg
     7981 caaccgactg gtttatgtat cttacattag gtctggttac cgcactggcg gtgattctcg
     8041 cgcgcacaca gtcacgttta atcgactcta ttcaaaagtt gttcacgtta atcgccacgg
     8101 ggttgctgcc gttagtatca ttgctaaccc tgatgtttat catcactctg ccgtttacgg
     8161 gcctgagcgc gatttctcgc cacatctccg ccgccgggtt gctgttaacg ctggcctttt
     8221 tgcaattgat cttaatggct attgtccgcg atccgcaaaa agcgtcactt ccctggacgg
     8281 ggccgttgcg ttgcctgatt aaaaccgctt tgctggttgc tccgctgtat gtgttcgttg
     8341 ccgcctgggc gttatggctg cgggtcgctc agtacggctg gactgtcgac cgcttgcagg
     8401 gcgcgctggc ggtgctggtg ttactggtgt ggtcgctggg gtattttgtc agtatcgtct
     8461 ggcgtaatgg gcaaaatccc cttgttcttc agggcaaagt gaaccttgcg gtttcgttat
     8521 tggtgttggt gatactggtg cttcttaatt cgccggtgct ggacagtatg cgtattagcg
     8581 tgaacagtca tatggcgcgt tatcagagcg gcaaaaacac gccagaccag gtaactatct
     8641 acatgctcga acagagcggt cgctatggac gtgcggcgct tgagtcgctg aaaagcgatg
     8701 ccgggtttat gaaagacccg aaacgcgcgc gggatctgct gatggcgtta gatggagagc
     8761 aacatcttca ggaacaggta tcggaaaaag tattagccga aaatgtgtta attgcccctg
     8821 gttctgttaa accggatgcg acattctggt cggccttaat ccaggatcgc tataacgtga
     8881 tgacctgtat tgaaaaagac gcctgcgtcc tggtcgagca agatctgaat agtgatggtc
     8941 aggcggagcg gatcctgttt gcttttaatg atgacagagt cattgtctat ggctttgact
     9001 cagacagaaa agaatgggac gcgcttgata tgagtttact tccgaacgaa ataacgaaag
     9061 aaaaattact cacagctgcg aaggatggaa aactggggac gaggccgaaa gcgtggcgcg
     9121 atctgacggt agatggtgaa acgctggaaa taaacttaag taagtgacaa cgcttttatc
     9181 ggatacgacg ctgtatctga ccaaaataat ttgcgattta tttcataggc gctggtaagc
     9241 gcagcacatc aggccattaa gttgtaaaat ccggcagagc cctctctgcc ggacatactc
     9301 attaatgaac ttgcggatct gccggagacg cgttgttgcg gatttcagca atatccatcg
     9361 cattgaacag atagtggtta ccgcagtaat cacaatgcat gtcaatttcg ccatcttccg
     9421 ccaggatgct atcaacttct tcatcaggca gcgttttcag cgcatcggcg caatgttcac
     9481 gcgagcaggt gcatttgaac tccacatcct gcggatcgta aaccgtcacc tcttcttcgt
     9541 gatacaaacg ccacaacact tcgtttgccg gtaaggtcag cagttcttcg gttttgatgg
     9601 tttcggttag cgtcgccagg tggtcaaagt cgtcctgctg ggcattttgc gcaggcatta
     9661 cctgcaacaa cataccgcct gtagccggtt tgccgtctac gtcgccggtg cgaataaaca
     9721 ggcgcgtcgg cagctgttca gaacgcataa agtaatcttc caggcaggcc gccagggtat
     9781 caccttccag accaactacg ccctgatagc gttcgccttc gctcggggta atggtgatca
     9841 ccacgtaacc attgccgacc agcgttttca ggtcggcatt ttctggaatt tcgccctgca
     9901 cgcgcgccac accgcgcatt tgctggttat tgttaccgtt aataaccgcc agattcatcg
     9961 gaccgtcgcc ctgcagctgt acggtgatat caccatcaaa cttcagcgta gcggttaaca
    10021 ggctggtcgc aaccagcagt tctgccagca cgtttttaac gggctgcgga taatcgtggt
    10081 tctcaaggat ctgttgcagg gtttccgaaa cggttaccag ttcgccgcga acggcaaaat
    10141 tttcaaacag atagcgatgt aattggtcat gttgcggcat aatcatctct cttgcaggtg
    10201 acagttattc actgtcgccg tgtttaaatc gtaacaggtc gcggcgctct tttttgtccg
    10261 ggcgtcggtc cgggtgcggc atggttaagg cattaagttt acgtgccatc gccatttttt
    10321 cgcgtttctc tacactttcc gcagtctctt catacagcaa ggctgcctcg ctggcggggc
    10381 gacgctgttc agtaatcgcc tttacaatca ccgtgcgttc gtcatttccc tggcgcagag
    10441 tgagcgtggc attcagctcg acgattttgc tcggcttgct gcgctgcccg ttgtaatgca
    10501 ccttaccgcc ttcaatcatt tcacgggcca gcgcgcgggt tttataaaaa cgggcagccc
    10561 atagccattt atccagtcga acctcaacag caggtttctc tttcatggcg tctccttcac
    10621 attagcgagg ggatcaggcg gcggtagtca ttcagtgacg gatggcgttg atactgtttc
    10681 tcggcaatcc cggaatcagg attagtcacg ccgaggcagt aacgaatacc aaattgcgcg
    10741 gcagcatcga gaatcgcttc gctgtcatca ataaacagcg ttctttcagc tttcagaccc
    10801 gtagcttcgg ccaccgcatg ccataaccgc tgatcctctt tcggataacc aaatgtgtgg
    10861 gtggaaagta ataaatcaag gtgtgcgtcc agacccgtat gctcaagttt taccgccagg
    10921 ttgtgcggat gagcattggt gagcaaaatt cgctgcttac cgctggcttt cagtgcctca
    10981 agaaacggaa tggtatcttc acgcagtacg gcgcgcggtc ccatctcggt ggtcattgca
    11041 cagatatcca gacccagttg ctcactccag taatcaagac agtaccagtt tagcgtatgc
    11101 tgtacgtcgt gatattgctg gcgcatatat tccatcgctt cctgtggcgt aaccccgttt
    11161 ttcgcgcccc atgtttcagg caccagcttt tgccagaaat agttatcgaa ggcgaggtcg
    11221 agcaacgtgc cgtccatatc cagcagaacg gtatctacgt cctgccaggc aatgttgata
    11281 tgcatgaggg aaatctccag agtgaagcaa tttgcgcgac agggtagcat aacctgccgc
    11341 gcaaacgtgt tattcgataa ggctttctga aggggtgatc agttgcgggt tcaggcagct
    11401 ttcataatag gcctgaatct ccatcatgcg agtgcgatga cgctggtaac gacgccaggc
    11461 ctgtacgcca ttgtaaatgg cgctacccag catcgtcagt agcagcaatg tggtgctgag
    11521 atagcgccac aggccggaac gatccgggat cggatgaagg ccaatatgct gcgtaccatt
    11581 ggcgtcagtg aagatttttg tgacgatacc ttcggcgtta aacggcgtat gcatcagcat
    11641 ttgtgccagt ttctggaaag cgttccactg ttcttgcggc gggtagtcgt aaagtgatgc
    11701 cgaaggccag ggctgatcaa caaaatcgct gccttcgtcg ctgacaatca ggaatccgcc
    11761 gggggccgga ctgtttagtg attgtgccgc tcgcgccgtt tcatgcgtga taaacggcgc
    11821 ggtggaggtt gccaccaggt tatccagcga ttccgcactc accgggcgta ataacacatt
    11881 cacgccatcg agcttcccgg cgttggcgcg ttttaccagc gcgtcccagt ctttactgtt
    11941 gccgagattg accagcgcat ttttcagtcg cacacagtca tctttggcag aacataaatc
    12001 cgctgtcttc agtacaatgt cgccaaaatc atcaagcaat accatgccgg atttttgaat
    12061 cgctgaacgt aatgaggcac tgacgcgaga ttcatcttcc ggtttagggt gcagctggcg
    12121 attaactgct tcagtcaatg ccgtcgcttt gttgaccagt tcagattctg gtaatggtaa
    12181 tgagcgggcg tcattccaga tgatctgcga gcagtcaaac ggtaaaaaag gtgaattggt
    12241 tttcgcgctc caggttccgg aagtgcgaat attacacatt cccgtaccgc taatacgcaa
    12301 tgtatcgcct acccgcacgc cagcgtcagc cagttgtttt acgctggtgg cttcaatggt
    12361 ctgcgcgcct ttcatccatg agagagtgaa tttcagcggc atatccagcg ggatccagaa
    12421 taacagcata aacagcacca gcagcgagcc cgcagcgata atcgtactgc gcagccagtg
    12481 ctgtaacgga aagtttttta cttcatcatg cagcgaaaga tatcgcccct gacgcactac
    12541 gtggcggtcg agatagatat caatatcggt ttgttgatcg agatcctgag caatgtatgg
    12601 ctgccagtgt gcgggataga ccaggtcgat aataccgagt gaaatattgt tgatctgttc
    12661 ctgatcgttt tcgccaaaca atccccaacg acggggtgta ccgcgcagac aatgaatttc
    12721 ccgcagggag gattttgccg ggggcgcgaa tagcccccac agacctgcgc ccagcagcag
    12781 taatgcgccg cctgccagcc acggaacaaa tacatccggg gtaatcaggc agaaaaagaa
    12841 catcaggaag gaggcgacga tcagcaacgc ttcacgcagc ccgcgcggac gactcagcgc
    12901 atattcttca tgcgtttctt tgcgaatatt gagtagctcg atttgctcac tctcttcccc
    12961 gcgaatcgac gcctgcgtgg acggaacagg ttgcaaggca tagccgcgcg tttcctgcat
    13021 gtactcctgc agcgtatgac cgttgagtga aataaccaac ggcagcgaat cggtatgaat
    13081 cagttcaacg gtattctcat cgttgatgta ctgttcccag aaggggggca ggtggacttc
    13141 taccgaatcg aggtagtaac gccatttatt cggatcgtcg gtagagatgc cgtaacgtgt
    13201 gatagcgtgt gtcagcatca tgacgttgtt gctttcggca ttcagcgcca gagagatcgg
    13261 tgccgcgcta gctcccgttg ggccaggcac ctgtaatacc tgcgtcaggc tctcaagata
    13321 attttcaacg gcgctacgtt cttcaggtgt gagtttacgc gtttgcgcat ccgcgaaggc
    13381 gttggtccag ggcagctgac gccgtctgga tcgcactttt atcagccatc ccgcaagtag
    13441 tgagcaggcc agcaaagcag ctaaaaaaat cacaatggtg ctcatgcttt ccccatctta
    13501 cttagtctgt caggcgtggt cagtcgcacc agacacaata catgattctg cggttggcta
    13561 tcggcaagcg tggagtttaa cttgagcatc attaagcaca tcacagtaac cgctgatcat
    13621 agcaaaccct ctgaaggcgg aatatcagca aattcttgga gttatttcaa cctattgact
    13681 tttaatttaa tttgatttga ggacgattat ttattaagtt acataaatgt aaataacatg
    13741 caattcacat tgccgaaagc gtgtctgata tcgcacaata accgctgatt tcacagcata
    13801 gatcccacga tgagcaaatc attacaaaaa cccaccattc tgaatgttga aactgtagcc
    13861 cgttcccgac tgtttaccgt cgagagcgtg gatctggagt tcagcaatgg cgtgcggcgt
    13921 gtttatgaac gaatgcgtcc aaccaaccgg gaagcagtga tgattgtgcc gattgtggac
    13981 gatcacctga tcctgatccg cgaatacgca gtgggaactg aatcctacga attaggtttt
    14041 tcgaaaggat taattgatcc gggtgaaagc gtctacgaag ccgctaaccg cgagctaaaa
    14101 gaagaggttg gatttggtgc gaacgatctg acttttttga agaagctcag catggcaccg
    14161 tcttactttt ccagcaaaat gaatatcgtg gtcgcgcaag atctctaccc ggaatcgctg
    14221 gaaggcgatg agccagagcc gctaccacag gtgcgctggc cgctggcgca tatgatggat
    14281 ttgctggaag accctgactt caacgaagcg cgtaatgtca gcgcgctgtt cctcgtgcgc
    14341 gaatggttga aagggcaggg gcgagtgtaa atgcgtgaag tttgcctgat gcacaacgct
    14401 tatcaggctt atggggttcc tgcaatatat tgatttttca cgattttgtt agccggataa
    14461 cgcgttcacc cgcatccggc ataaacaaat gcactttgtc agccaactga aaaggcgccg
    14521 aagcgccttt ttaatcagaa caattcctgt gcctcaccat tatcgataat ggtcgttccc
    14581 acctcgtgca ccgcctgttg tgtcggctgc gtaccttcga tgaaatactc ttcgcggctg
    14641 ttgccaccat tagctaactg cccggtgctg cgatcgatat tcaccgtcac aatacccggt
    14701 ggcggcgtca gcggctgctc cggcacacct tcaagaacgg ctttcatata agcgtcccat
    14761 gcaggctggg cactcttggc tccgccttcg taacctgaga tctgatcttt aatcgctccg
    14821 gaagccgttg tatgaccgag attacgacgg tgatcatcaa agccaatcca gaccgaggtc
    14881 acaacgcccg gaccgtaacc cgagaaccac gcatctttcg aactgttagt ggtaccggtt
    14941 ttcccgccga tatcgcgacg ctgcaaatca cgacctgcac gccagccagt accctgccag
    15001 cctggctcac caaagatatt ggtgttcaaa gcactcttaa tcaggaatgc cagcggagtg
    15061 ttgatgacgt gcggtgcgta ctcctgcgcg ccagtcttcg ccactaacgc ctgatttgcc
    15121 tgctccagct gcggcattgg tacagaaaca ttctgctgct cgcgggagat agcgacatct
    15181 tcaacatcgt tattttccag cacgttcgat ttctgcgtat caccgtaaat caccggaata
    15241 tcgcattccg ggcaggctac tttcggtttc gcttcgaaaa tcacgccgcc ctgatcgttt
    15301 tcaattttgc tgataaacca cgggtccacc aggaagccgc cgttcgccat gaccgcgtag
    15361 ccgcgcgcca cctgcattgg ggtgaaggac gctgaaccca gcgccagcga ttcggtgtgg
    15421 acaatgtttt gcgccgggaa gccgaagcgt tgcagatatt ctgcagcgta gtcgacgccc
    15481 atagcccgca ttgcacgtac catcaccacg tttttcgact gacccagccc ctgacgtaag
    15541 cgaattggac cagcatattg tggcggcgag tttttcggct gccagtcaga accggcacct
    15601 gcgtcccagc gagaaattgg cacatcgttc aacatacttg ccagcgtcag acctttatcc
    15661 atcgccgcgg tgtagaggaa cggtttgatg ttggaaccca cctgacgcag tgcctgggtg
    15721 gcgcggttaa acttgctctg attgaaatca aagccaccga ccagcgccat aacggcaccg
    15781 ttttgcggat tgatcgacac cagcgccgag ttcacttccg gcacttgtgc cagccaccat
    15841 gcatcgccaa cctgacgaac ccagatttgc tgacccgttt gcagaacatc ggtcacttta
    15901 cgcggcgtcg gtccttgctg agtatccgaa cggtaaggac gcgcccagcg aacgccttcc
    15961 atactcaatg cgacggtcga cccgtccgcc agcatcgccg tcgctccctg aggattggcg
    16021 ctggtgactg cggcaggcag cagcggacca taggtcggca gcgccttcag cgtatcggta
    16081 atcttgttgt tatcccacgc cgactcgccc actttccaca gcacatttgc cgggccgcga
    16141 tagccgtggc gcatgtcgta gtccagcacg ttattacgta ccgcctgctg tgcggcctgc
    16201 tgcactttgc gggtgatggt ggtgtaaatg cgataaccgt cttcataggc actttcgcca
    16261 taacggttat acatctcctg gcgcaccatt tcgctcaggt acggcgcaga gaaagcaatc
    16321 tccggcgcgt gatagttagc gttaatcgcc tcagtgcgtg tctgatcgaa ctgttgttgg
    16381 gtgatatacc cttcatccag catccgcgac agtacgacgt tacgccgcgc gacggcacga
    16441 tccattgagt agagcggatt aaaggtggaa ggcgctttcg gcagcccggc tatcacagcc
    16501 atttcgttca gcgtcagttg gtcgaccgtt ttaccgaaat agacttgtgc cgcagcaccg
    16561 acaccatagg cgcggtaacc gaggtaaatc ttgttcagat aaagctcgag gatctcgtct
    16621 ttcgtcagca actgttcaat gcgaatcgcg aggaagactt ccttaatctt acgcatcagc
    16681 gtgcgttctg gactgaggaa gaagtttctc gccagctgct gggtaatggt actcgcccct
    16741 tgtgacgcgt ggccggagaa cagcgccaca cttgccgcac ggaagatccc caccgggtca
    16801 acgccgtgat gctcgtagaa gcggctgtct tccgtcgcga taaaggcttt caccatctcc
    16861 ggcgggattt gatccaacgt aaccggaata cgacgtttct caccgtattg agcaatcagc
    16921 tcgccatcgg cgctgtaaat ctgcatcgga atttgcaggc gaacatcttt taatgtcgcc
    16981 acatccggca gttgtggctc gatgtagcgg tataggccat aaatcgagcc tgctcccagc
    17041 agaatgcaac agactgcaag gatcaaaaaa tactttacga acttcactgg aaatttccca
    17101 tttagtttca tttgggcagt ttataaacaa acgcgcggta gtataaaggc aagccagacg
    17161 cattgatata cccgtcagag tgacgggtga taaggagatc atcacaatgg catttaagat
    17221 ctggcaaatt ggtttgcatt tacaacagca agaagcggta gcggttgcga tcgtgcgggg
    17281 cgcaaaagaa tgctttttgc aacgctggtg gcggttgccg ctggagaacg acattatcaa
    17341 agatgggcgg attgttgatg cgcagcagct ggctaaaacg ttgttacctt ggagtcgcga
    17401 actgccgcag cgtcatcaca ttatgttggc gtttcccgcc agtcgcacat tacagcggtc
    17461 atttccgcgc ccgtcgatgt cccttggtga gcgggagcaa acggcctggc tgtcagggac
    17521 gatggcccgc gagctggata tggatccgga ctccctgcgc ttcgattaca gcgaagactc
    17581 actcagtccc gcctataacg tgactgccgc gcaaagcaaa gagctggcaa cgctgcttac
    17641 tctggcagaa aggttgcgtg ttcatgttag tgcgatcacc ccggatgcca gtgcattaca
    17701 gcgattcctg ccttttttac cttctcatca gcaatgtctg gcctggcgtg ataacgaaca
    17761 gtggctgtgg gcgacgcgct atagctgggg gcgcaaactg gcggtgggga tgactagcgc
    17821 gaaggagctg gcggcagcgt tattcgttga tcccgacagc gtcgcgatat gtggcgaagg
    17881 cggatttgac ccctgggagg ccgtttctgt tcgtcagccg ctgctaccgc cgcctggtgg
    17941 agactttgcc atcgcgctgg ggctggcgct tgggaaggcg tactgatgaa cccgccaatt
    18001 aattttttgc cctggcgaca gcaacgccgg accgcttttc tgcgtttctg gttgctgatg
    18061 ttcgttgcgc ctctgctgct ggccgtcggg ataacgctaa tactgcgtct gacaggcagc
    18121 gccgaagcgc gcatagacgc agttttgctt caggcggaac aacaactcgc ccgcagctta
    18181 cagataacga agccacgttt gctggagcaa cagcagttac gcgaacagcg ttcgcaacgg
    18241 cagcgccagc gacaatttac ccgcgactgg caatctgcgc tggaagcact ggcggcgctt
    18301 ttacccgagc acgcctggct gacaacgata agctggcagc agggaacgct ggagatcaag
    18361 gggctgacaa caagcattac cgcgttaaac gcactagaaa cgtcactccg ccaggatgcg
    18421 tcttttcatc tcaatcagcg gggagccacg cagcaggatg cgcagggacg ctggcaattt
    18481 gagtatcagt taacaaggaa ggttagcgat gaacatgttc tttgactggt ggttcgccac
    18541 atcaccccgc ctccgccagt tttgctgggc attctggttg ctgatgttag ttacgctcat
    18601 ttttctgtca tcgacacacc atgaagagcg cgacgcatta attcgattac gggcaagtca
    18661 tcaccagcag tgggccacac tgtatcgcct ggttgacacc actcccttca gcgaagaaaa
    18721 aacgctgccc ttttcgccac tggattttca gttgcccggc gcgcaactgg tttcctggca
    18781 tccatccgcg cagggaggtg agttggcgtt gaaaacgctg tgggaagcag tgccgtcggc
    18841 attcacacgg ctggcagagc gcaacgtcag cgtgagccgt ttttcgttaa gcgtggaagg
    18901 tgatgatctt ttgttcacgc tacaactgga gacgccgcat gagggttaaa cgctggttgt
    18961 tggcaggtat tgcattgtgc cttttaaccg gtatgcgtga cccttttaaa ccgccggaag
    19021 atctatgccg gattagcgaa cttagccagt ggcgctatca ggggatggta gggcgaggcg
    19081 agcgcatcat cggtgtaata aaagacgggc aaaagaaatg gcgacgggtg cagcaaaacg
    19141 atgtgctgga aaacggctgg acaattttac agctgacgcc agacgtacta acgctgggta
    19201 ccgggacaaa ctgcgaaccg ccacaatggt tgtggcaacg gcaaggagat acaaatgaag
    19261 caatggatag ccgcactact gttgatgctg atacccggcg tacaggcggc aaagccgcaa
    19321 aaagtgacgc tgatggtgga tgacgttccg gtagctcagg tgttgcaggc gctggctgaa
    19381 caggagaagt tgaacctggt cgtgtcgcca gacgtcagcg gtacggtgtc gttacatcta
    19441 acagatgttc cctggaagca ggcactacaa actgtagtga aaagcgccgg actgataacg
    19501 cggcaggaag gcaacattct ctcagtgcat tccattgcct ggcagaataa caatatcgcc
    19561 cgccaggagg cggagcaggc gcgggcgcag gcaaatctgc cgctggaaaa tcgcagtata
    19621 accctgcaat acgccgacgc gggagaactg gcgaaagcgg gggagaagct actgagtgcc
    19681 aaagggagta tgatcgtcga taaacgcacc aatcgccttt tgctacgaga taacaaaacg
    19741 gcgttaagcg cgcttgaaca gtgggtagcg caaatggatc tgccggtcgg gcaggttgag
    19801 ctgtcggcgc atattgtcac cattaatgaa aaaagtttgc gtgagttagg cgtgaaatgg
    19861 acgctggccg atgcgcaaca cgctggtggc gttgggcaag tcaccacgct tggtagcgac
    19921 ctctccgtag cgacggcgac aacgcatgtc ggttttaaca ttgggcgcat caacggacgc
    19981 ttgctggatc ttgagctttc cgcgctcgaa caaaaacagc agctggatat tatcgccagt
    20041 ccgcgtctgc tggcctcaca tcttcagcct gccagcatta aacaggggag cgaaattcca
    20101 tatcaggttt ccagcgggga aagtggcgcg acgtcggtgg aatttaaaga ggccgtcctg
    20161 gggatggagg tcacgcccac ggtgttacaa aaaggtcgca tccggctgaa attacacatc
    20221 agccagaacg ttccggggca ggtgctacag caggccgatg gcgaagtgct ggcgattgat
    20281 aagcaggaga tcgaaacgca ggttgaggtc aaaagcggag aaacgttggc gctgggcggc
    20341 atttttaccc gtaaaaataa atcgggtcag gatagcgtac cgttgcttgg cgacattccc
    20401 tggttcgggc aattatttcg tcatgacgga aaagaatatg aacgacgcga gttagtggtg
    20461 tttatcacgc cacgactggt ttccagtgag taaacagccg taaaagcggt aatgttttta
    20521 tgctgaacgt gtttcatcta tttgacgcgc gcaggtattt agcatacaag gagtaccgat
    20581 ttgagagttg gtgctctttg ctgcctgcgt tccatgatga tgatttatca ttcaggcggc
    20641 attttgctgt cttttttacg ctaatcttac ccggtgattt atcgccagag cggtggtagc
    20701 aaggcagcgc gcttgcagcg accagatatg cagagggatg ggtgatttat tcagttgcca
    20761 aacccgctgg agtattgaga taattttcag tctgactctc gcaatatctt atgaggtttc
    20821 agttcatgtc ctgcggcgct ctctgagcga agcgggttta tcattaacga atagtcttag
    20881 tagtaccgaa aaaatggcag agaaacgcaa tatctttctg gttgggccta tgggtgccgg
    20941 aaaaagcact attgggcgcc agttagctca acaactcaat atggaatttt acgattccga
    21001 tcaagagatt gagaaacgaa ccggagctga tgtgggctgg gttttcgatt tagaaggcga
    21061 agaaggcttc cgcgatcgcg aagaaaaggt catcaatgag ttgaccgaga aacagggtat
    21121 tgtgctggct actggcggcg gctctgtgaa atcccgtgaa acgcgtaacc gtctttccgc
    21181 tcgtggcgtt gtcgtttatc ttgaaacgac catcgaaaag caacttgcac gcacgcagcg
    21241 tgataaaaaa cgcccgttgc tgcacgttga aacaccgccg cgtgaagttc tggaagcgtt
    21301 ggccaatgaa cgcaatccgc tgtatgaaga gattgccgac gtgaccattc gtactgatga
    21361 tcaaagcgct aaagtggttg caaaccagat tattcacatg ctggaaagca actaattctg
    21421 gctttatata cactcgtctg cgggtacagt aattaaggtg gatgtcgcgt tatggagagg
    21481 attgtcgtta ctctcgggga acgtagttac ccaattacca tcgcatctgg tttgtttaat
    21541 gaaccagctt cattcttacc gctgaaatcg ggcgagcagg tcatgttggt caccaacgaa
    21601 accctggctc ctctgtatct cgataaggtt cgcggcgtac ttgaacaggc gggtgttaac
    21661 gtcgatagcg ttatcctccc tgacggcgag cagtataaaa gcctggctgt actcgatacc
    21721 gtctttacgg cgttgttaca aaagccgcat ggtcgcgata ctacgctggt ggcgcttggc
    21781 ggcggcgtag tgggcgatct gaccggcttc gcggcggcga gttatcagcg cggtgttcgt
    21841 ttcattcaag tcccgacgac gttactgtcg caggtcgatt cctccgttgg cggcaaaact
    21901 gcggccaacc atcccctcgg taaaaacatg attggcgcgt tctaccagcc tgcttcagtg
    21961 gtggtggatc tcgactgtct gaaaacgctt cccccgcgtg agttagtgtc ggggctggca
    22021 gaagtcatca aatacggcat tattcttgac ggtgcgtttt ttaactggct ggaagagaat
    22081 ctggatgcgt tgttgcgtct ggacggtccg gcaatggcgt actgtattcg ccgttgttgt
    22141 gaactgaagg cagaagttgt cgccgccgac gagcgcgaaa ccgggttacg tgctttactg
    22201 aatctgggac acacctttgg tcatgccatt gaagctgaaa tggggtatgg caattggtta
    22261 catggtgaag cggtcgctgc gggtatggtg atggcggcgc ggacgtcgga acgtctcggg
    22321 cagtttagtt ctgccgaaac gcagcgtatt ataaccctgc tcaagcgggc tgggttaccg
    22381 gtcaatgggc cgcgcgaaat gtccgcgcag gcgtatttac cgcatatgct gcgtgacaag
    22441 aaagtccttg cgggagagat acgcttaatt cttccgttgg caattggtaa gagtgaagtt
    22501 cgcagcggcg tttcgcacga gcttgttctt aacgccattg ccgattgtca atcagcgtaa
    22561 caacaagaaa ggtcaggccg cttatcaagc ggtctattag cttcaggtta attgcaacgt
    22621 ggtaagcatt aaccttttag tggggtgtta aatggatgaa ttcaaaccag aagacgagct
    22681 gaaacccgat cccagcgatc gtcgtactgg tcgttctcgt caatcttctg aacgttctga
    22741 gcgtactgaa cgtggcgaac cgcagatcaa ttttgatgat attgaacttg atgacactga
    22801 cgatcgccgt ccgactcgtg cgcaaaaaga gcgcaatgag gaaccggaaa tcgaagaaga
    22861 aattgacgaa tccgaagatg aaaccgtgga tgaagagcgc gtagagcgtc gtccgcgtaa
    22921 gcgcaaaaaa gcagccagta aacccgcttc tcgtcagtat atgatgatgg gcgtcggcat
    22981 tctggttcta ctgctgttga tcatcggtat cggttctgcg ctaaaagccc cctcgacctc
    23041 ttccagcgat caaaccgcgt ctggcgagaa gagtattgat cttgcaggca atgcgaccga
    23101 tcaggcgaat ggggtgcagc cagcgccggg aaccacgtct gcggaaaata ctcagcagga
    23161 tgtttctctg ccaccgatct cttctacgcc gactcaaggg caaaccccgg cggcaacgga
    23221 tggtcaacaa cgtgttgaag tgcagggtga cctgaacaat gcgctgactc agccacaaaa
    23281 tcagcaacag ttgaacaatg tggcggtcaa ttccacattg ccgaccgaac cagcgactgt
    23341 cgcgcctgtt cgcaatggca atgcatcgcg tgacacggcg aaaacgcaaa ccgctgaacg
    23401 tccgtccact acgcgcctag ctcgtcagca ggcggtgatt gaaccgaaaa aaccgcaagc
    23461 aaccgtgaaa acggagccga agccggtagc acagacgccg aagcgtactg aaccagctgc
    23521 ccctgtggcg agcacgaagg caccggctgc gacttctacg ccagcaccaa aagagacggc
    23581 gactacggct ccagtacaga cggcatcccc ggcgcaaacc acggcaacac cagccgctgg
    23641 agggaagacc gcaggtaatg ttggttcgtt gaaatcggca ccgtccagcc attacactct
    23701 gcagctgagc agttcctcta actacgacaa cctgaacggt tgggcgaaga aagagaatct
    23761 gaaaaactac gttgtctatg aaacgacgcg taatggtcag ccgtggtatg tcctggtttc
    23821 tggcgtgtac gcttcgaaag aagaggcgaa aaaagcggta tctacattgc cagcagatgt
    23881 tcaggccaaa aacccgtggg cgaaaccgct gcgtcaggta caggccgatc tgaagtaatc
    23941 aaggttatct cccgcaatgg tttatcgttg cgggagctgc ctgaagcgct ggatgctgtc
    24001 ggagctttct ccacagccgg agaaggtgta attagttagt cagcatgaag aaaaatcgcg
    24061 cttttttgaa gtgggcaggg ggcaagtatc ccctgcttga tgatattaaa cggcatttgc
    24121 ccaagggcga atgtctggtt gagccttttg taggtgccgg gtcggtgttt ctcaacaccg
    24181 acttttctcg ttatatcctt gccgatatca atagcgacct gatcagtctc tataacattg
    24241 tgaagatgcg tactgatgag tacgtacagg ccgcacgcga gctgtttgtt cccgaaacaa
    24301 attgcgccga ggtttactat cagttccgcg aagagttcaa caaaagccag gatccgttcc
    24361 gtcgggcggt actgttttta tatttgaacc gctacggtta caacggcctg tgtcgttaca
    24421 atctgcgcgg tgagtttaac gtgccgtttg gccgctacaa aaaaccctat ttcccggaag
    24481 cagagttgta tcacttcgct gaaaaagcgc agaatgcctt tttctattgt gagtcttacg
    24541 ccgatagcat ggcgcgcgca gatgatgcat ccgtcgtcta ttgcgatccg ccttatgcac
    24601 cgctgtctgc gaccgccaac tttacggcgt atcacacaaa cagttttacg cttgaacaac
    24661 aagcgcatct ggcggagatc gccgaaggtc tggttgagcg ccatattcca gtgctgatct
    24721 ccaatcacga tacgatgtta acgcgtgagt ggtatcagcg cgcaaaattg catgtcgtca
    24781 aagttcgacg cagtataagc agcaacggcg gcacacgtaa aaaggtggac gaactgctgg
    24841 ctttgtacaa accaggagtc gtttcacccg cgaaaaaata attctcaagg agaagcggat
    24901 gaaacagtat ttgattgccc cctcaattct gtcggctgat tttgcccgcc tgggtgaaga
    24961 taccgcaaaa gccctggcag ctggcgctga tgtcgtgcat tttgacgtca tggataacca
    25021 ctatgttccc aatctgacga ttgggccaat ggtgctgaaa tccttgcgta actatggcat
    25081 taccgcccct atcgatgtac atctgatggt gaaacccgtc gatcgcattg tgcctgattt
    25141 cgctgccgct ggtgccagca tcattacctt tcatccagaa gcctccgagc atgttgaccg
    25201 cacgctgcaa ctgattaaag aaaatggctg taaagcgggt ctggtattta acccggcgac
    25261 acctctgagc tatctggatt acgtgatgga taagctggat gtgatcctgc tgatgtctgt
    25321 taacccaggt tttggcggtc agtcgttcat tccacaaaca ctggataaac tgcgcgaagt
    25381 acgtcgtcgt atcgacgagt ctggttttga cattcgactg gaagtggacg gtggcgtgaa
    25441 ggtgaacaac attggcgaaa tcgctgcggc gggcgcggat atgttcgtcg ccggttcggc
    25501 aatcttcgac cagccagact acaaaaaagt cattgatgaa atgcgcagtg aactggcaaa
    25561 ggtaagtcat gaataagttt gaagatattc gcggcgtcgc ttttgatctc gacggtacgc
    25621 tggttgacag tgctcccggt cttgctgctg cggtagatat ggcgctgtat gcgctggagt
    25681 tacccgtcgc aggtgaagaa cgcgttatta cctggattgg taacggcgca gatgttctga
    25741 tggagcgtgc attggcctgg gcgcgtcagg aacgtgcgac tctgcgtaaa acaatgggta
    25801 aaccgcccgt tgatgacgac attccggcag aagaacaggt acgtattctg cgtaaactgt
    25861 tcgatcgcta ctatagcgag gttgccgaag aggggacgtt tttgttcccg cacgttgccg
    25921 atacgttggg cgcgttgcag gctaaaggcc tgccgctagg cctggtcacc aacaaaccga
    25981 cgccgttcgt cgcgccactg ctcgaagcct tagatattgc caaatacttt agcgtggtta
    26041 tcggcggcga tgatgtgcaa aacaaaaaac cgcatccgga cccgctgtta ctggtggctg
    26101 agcggatggg aattgcccca caacagatgc tgtttgtcgg cgactcacgc aatgatattc
    26161 aggcggcaaa agcggcaggt tgcccatcag ttggcttaac ctacggatat aactacggcg
    26221 aggctatcga tctcagccag cctgatgtaa tttatcagtc tataaatgac cttctgcccg
    26281 cattagggct tccgcatagc gaaaatcagg aatcgaaaaa tgactaagcc catcgttttt
    26341 agtggcgcac agccctcagg tgaattgacc attggtaact acatgggtgc gctgcgtcag
    26401 tgggtaaaca tgcaggatga ctaccattgc atttactgta tcgttgacca acacgcgatc
    26461 accgtgcgcc aggatgcaca gaagctgcgt aaagcgacgc tggatacgct ggccttgtat
    26521 ctggcttgtg gtatcgatcc tgagaaaagc accatttttg ttcagtccca cgtaccagaa
    26581 catgcgcagt taggctgggc tctgaactgc tatacctact tcggcgaact gagccgcatg
    26641 acccagttta aagataaatc tgcgcgttat gccgagaaca tcaacgctgg tctgtttgac
    26701 tatccggtgc tgatggctgc ggacatcctg ctgtatcaaa ctaatctggt accggtgggt
    26761 gaagaccaga aacagcacct ggaactgagt cgcgatatcg cccagcgttt caacgcgctg
    26821 tatggcgaga tctttaaggt gccggagccg tttattccga aatctggcgc gcgcgtaatg
    26881 tcgctgctgg agccgaccaa gaagatgtcc aagtctgacg ataaccgcaa taacgttatc
    26941 ggcctgctgg aagatccgaa atcggtagtg aagaaaatca aacgcgcggt cactgactcc
    27001 gacgagccgc cggtagttcg ctacgatgtg cagaacaaag cgggcgtttc caacctgctg
    27061 gatatccttt ctgcggtaac gggccagagc atcccagaac tggaaaaaca gttcgaaggc
    27121 aagatgtatg gtcatctgaa aggtgaagtg gctgatgccg tttccggtat gctgactgaa
    27181 ttgcaggaac gctatcaccg tttccgcaac gatgaagcct tcctgcaaca ggtgatgaaa
    27241 gacggcgcag aaaaagccag tgtacacgct tcccgtacgc tgaaagcggt gtacgaagcg
    27301 attggttttg tggcgaagcc gtaatatcaa aacgctcgga cggtcccctc gcccctttgg
    27361 ggagagggtt agggtgaggg gagcaggcaa gcgccagtgg gaattaccct ttgctcgcat
    27421 tgtcgaataa atcacttcgt catcactctg aaaccgggga aacccggttt ttttatcctc
    27481 atttgcaata atccgaaaaa atgtgaagcg cctcgccgtt tccacatctc acagttgcca
    27541 cttatcttca ttttaatgaa gatataaaca ttcattttat tgaaaataca ttatgcgtcg
    27601 aacgtttatc aaaaaagaag gcgtcgtcat cacgacgctg gcccgttatt tgttggggga
    27661 aaaatgcggt aatcgactga aaaccataga tgagctggca actgaatgcc gttcatcggt
    27721 tggcctgacg caggccgtgt tgaaaacgtt ggaatcaagt ggagcgatac ggattgaacg
    27781 ccgtgggcgc aatggcagtt atctggtcga aatggataat aaagcgctgc tgagtcatgt
    27841 ggatatcaat aacgttgtgt gtgccatgcc tttgccctat acccgcttgt acgaaggttt
    27901 agcaagcggg ctgaaagccc agtttgatgg cattcctttt tattatgcgc atatgcgtgg
    27961 cgcggatatt cgtgtggagt gtttgcttaa cggtgtctat gacatggcag tagtttcccg
    28021 cctggcggcg gaaagttatc tcagccaaaa caatttgtgc atcgccctcg agcttggccc
    28081 gcatacgtat gttggtgaac atcaactgat atgccgcaaa ggtgagtctg gaaatgttaa
    28141 gcgagtaggt ctcgatagtc gttcggcgga tcagaaaatc atgaccgatg tcttttttgg
    28201 cgatagtgat gtggaacgtg tcgatctctc ttatcacgag agtttacaac gcattgttaa
    28261 aggcgatgtc gatgcggtta tctggaacgt ggtggcggaa aacgaactga ccatgctggg
    28321 attagaggcg acgccgctca cagacgatcc gcgattttta caggccaccg aagccgtggt
    28381 cctgacgcaa gtcgatgatt acccaatgca acaactgctg cgtgccgttg tagataaaca
    28441 cgccctgctc gcccatcaac aacgggtagt gagtggggaa caggaaccga gttattaaac
    28501 gaaaggcatc tgatatggaa accagactca acctgctttg cgaggcaggc gttattgata
    28561 aggacatctg caaaggcatg atgcaggtcg tcaacgtact ggaaacagag tgccatctgc
    28621 cggtgcgcag tgagcaagga acgatggcga tgacacatat ggcgagtgca ctgatgcgca
    28681 gtcgccgtgg tgaagaaata gagccgctgg ataacgaatt gctggcagag ctggcgcaat
    28741 ccagccactg gcaagccgtt gtgcaattgc atcaggtgtt gttgaaggaa ttcgcactgg
    28801 aagttaatcc gtgtgaagaa ggctatttgc tggccaacct ttatggatta tggatggctg
    28861 ctaacgaaga ggtttgaagc tcccgacaaa tccacgtcgc acaacctaaa tattcaaaaa
    28921 aatgaatatt taattcaagg aacagaaacg aggcaacaag atgtttgtag aagcattgaa
    28981 acgccagaac ccggcgctga tttccgccgc actaagtttg tggcagcagg gcaagatcgc
    29041 cccggacagc tgggtgatcg acgtggatca ggtactggaa aacggtaagc gactgattga
    29101 gacggcgcgg ctttacggca ttgaactgta tctgatgacc aagcagtttg gccgtaaccc
    29161 atggctggcg gaaaaattgc tggcattagg ttacagcggc attgtggcgg tggattacaa
    29221 agaggcgcga gtcatgcgcc gcgctggttt gtcggtggcg catcaggggc atctggtaca
    29281 aatcccttgt catcaggttg ctgacgccgt tgaacagggc accgacgtca tcaccgtgtt
    29341 tactctcgac aaagcgcggg aagtttctgc ggcagcggtg aaggccggac gtgtgcagtt
    29401 tgtgctgctc aaagtttata gcgacgatga ttttctttat ccggggcagg agagcggttt
    29461 tgtacagcat tcgctgcacg aggtggttgc tgaaattaag aaactgccgg gtctgcattt
    29521 agccggactt acccatttcc cttgcctgct ttgggatgag gctgccggaa aagttttgcc
    29581 gacaccgaat cttcacacgc tgatacaggc acgggatcaa ctggcgaaat ctggtattgc
    29641 acttgagcaa ctgaacgcgc cttcagcgac cagctgcact tcgctgccat tactggcgca
    29701 atacggtgtg actcatgccg aacccggtca tgcgctgacg ggcactattc cggcaaacca
    29761 gcagggcgat cagtctgaac gtatcgcgat gctctggttg agtgaaatct cccatcattt
    29821 ccgtggcgac agctactgct acggcggcgg ttactaccgt cgtggtcatg cgcaacatgc
    29881 gttggtgttt acgccagaaa atcaaaagat tactgaaacc aatctcaaaa ctgtggatga
    29941 cagcagtatc gactacaccc tgtcgctggc aggcgagttt ccggtaagca gtgcagtggt
    30001 gctctgtttc cgcacgcaga tttttgtcac ccgtagcgat gtggtgctgg tgtccggtat
    30061 tcaccgtggc gaaccgaaaa tcgttggtcg ttatgacagt cttggaaact ctctgggggc
    30121 gtaatggcgc gatttgtggt gttagtgatt gatagctttg gcgtaggggc aatgaaagat
    30181 gtcacgctgg tgcgtccgca agatgcggga gcgaatacat gtggtcacat cctgagccag
    30241 ttgccgcatt tgcagctacc aacgctggag aagctggggc taatcaacgc attgggttat
    30301 gcgccaggcg atatgcagcc gtcagattcc gcaacctggg gcgtggcaga gctgcaacat
    30361 gaaggtggcg atacctttat ggggcatcag gaaattttag gcacgcgccc gttaccgccg
    30421 ctgcggatgc ctttttgcga tgtgattgac cgtgttgagc aggcattagt atccgccggt
    30481 tggcaggtgg agcgccgtgg cgatgaactg caatttctgt gggtcaatca ggcggttgcg
    30541 attggcgata atctcgaggc ggatttaggc caagtctata acattaccgc caatctctct
    30601 gtgatctctt ttgacgacgc aatcaaaatt ggtcgtatcg tgcgtgagca ggtacaggtc
    30661 ggtcgggtca ttacatttgg tggcctgtta accgacagtc aacgcattct cgatgccgca
    30721 gaaagcaaag aagggcgctt tattggtatc aatgcgccgc gttctggcgc ttatgacaac
    30781 ggcttccagg tcgtgcatat gggctacggt gtcgataaaa aagtgcaggt gccgcaaaaa
    30841 ctgtatgagg cgggcgtgcc aaccgtgctg gtgggtaagg tggcagatat cgtcagcaat
    30901 ccttatggcg tgagctggca aaacctggtg gatagccagc ggattatgga tatcaccctc
    30961 gacgaattta acacccatcc gacggcgttt atttgcacca atatccagga aaccgacctc
    31021 gctggtcatg cagaagacgt cgcacgttat gccgaacgtt tgcaggtcgt tgaccgtaac
    31081 cttgcccggc ttgttgatgc gatgcagcca gatgattgcc tggtcgtgat ggcggatcac
    31141 ggcaacgatc cgaccattgg tcacagccac catacccgcg aagtggtgcc gctgctggtt
    31201 tatcagcaag gcctggctgc tacgcagctc ggtgtgcgca ccacgctttc tgatgtggga
    31261 gctaccgtgt gtgaattttt ccgtgcgcca ccgccacaaa atggtcgctc ttttctttcc
    31321 tccctccggt ttgcaggaga caccctatga gttttgatcc gacgggttac accctggccc
    31381 atgagcatct gcatattgat ctctccggct ttaaaaacaa cgtggactgc cgccttgatc
    31441 agtatgcgtt catttgccag gagatgaacg acctgatgac ccggggtgta cgtaatgtga
    31501 ttgagatgac caaccgttac atggggcgca atgcgcaatt tatgctcggt gtaatgcgcg
    31561 aaaccgggat caacgtggtg gcctgtactg gttattacca ggatgcgttt ttcccggaac
    31621 atgtggtgac ccgcagcgtg caggaactgg cgcaggagat ggtcgatgaa attgaacagg
    31681 gtatcgatgg cacggagctg aaagccgggc tcatcgcgga gatcggctcc agcgaaggaa
    31741 agattacgcc gctggaagag aaggtattta ttgccgctgc gctggcgcat aaccagaccg
    31801 gacgcccgat ctccacgcat acgtcgttca gcaccatggg gctggaacaa ctggctctgt
    31861 tgcaagccca cggagttgat cttgcgcgcg tcaccgttgg tcactgcgat ctgaaagaca
    31921 acctcgacaa cattttgaag atgatcgatc tcggcgcgta cgtgcagttc gacaccattg
    31981 gtaagaacag ttactacccg gacgaaaagc gcattgcgat gctccacgcg ctacgtgacc
    32041 gtgggttgct gaaccgcgtc atgctgtcga tggatattac gcgccgctcc catttaaaag
    32101 ccaatggtgg ttatggctat gactatttat tgaccacctt tattccgcaa ttgcgccagt
    32161 caggattcag tcaggccgat gtggatgtga tgttacgtga aactccctct caatttttcc
    32221 aataaggaca gactcatgaa aaagattggc gttgcaggct tacagcgtga gcagattaaa
    32281 aaaaccattg aagcgacggc tcctggcagt tttgaagttt tcattcacaa cgacatggaa
    32341 gcggcaatga aagtgaaatc cgggcaactg gattactaca tcggtgcgtg taataccggt
    32401 gcgggcgcgg cattgtcgat tgccatcgcg gtgattggct ataacaaaag ttgcaccatt
    32461 gccaaaccag gcattaaagc gaaagacgag catatcgcca aaatgatcgc tgaaggtaaa
    32521 gtggcgtttg gcctttccgt tgagcacgtc gaacacgcga ttccgatgct gattaaccat
    32581 ctgaaataaa aggcacgact atggatctgt atattcagat tatcgtggtg gcgtgcctga
    32641 cgggtatgac atcgcttctg gcgcatcgct cggcggctgt ttttcatgac ggcatccgcc
    32701 cgatcctgcc gcaactgatt gaaggctata tgaaccgtcg cgaggcgggg agtatcgctt
    32761 ttggtctgag cattggtttt gtggcctcgg tggggatttc ttttaccctg aaaaccgggc
    32821 tgctc
//
LOCUS       DAJVUN010000026        32626 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.026, whole genome shotgun sequence.
ACCESSION   DAJVUN010000026 DAJVUN010000000
VERSION     DAJVUN010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32626
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.026"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..268)
                     /locus_tag="OQQ76_000977"
     CDS             complement(<1..268)
                     /locus_tag="OQQ76_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967562.1"
                     /translation="METQWTRMTADEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARR
                     ANEQHEAKKPYQIRLLTGASISAAADDVLSDADAVSWRAPYQTSS"
     gene            complement(292..1077)
                     /gene="scpB"
                     /locus_tag="OQQ76_000978"
     CDS             complement(292..1077)
                     /gene="scpB"
                     /locus_tag="OQQ76_000978"
                     /EC_number="7.2.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA decarboxylase"
                     /protein_id="HCS1967563.1"
                     /translation="MSYQYVNVATINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN
                     RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISM
                     VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL
                     IFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGE
                     AHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH"
     gene            complement(1088..2083)
                     /gene="meaB"
                     /locus_tag="OQQ76_000979"
     CDS             complement(1088..2083)
                     /gene="meaB"
                     /locus_tag="OQQ76_000979"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HCS1967564.1"
                     /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL
                     DAIMPYCGNTLRLGVTGTPSAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL
                     GDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS
                     ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE
                     SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASGRLQQVRQQQSVE
                     WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD"
     gene            complement(2076..4219)
                     /gene="scpA"
                     /locus_tag="OQQ76_000980"
                     /pseudo
     CDS             complement(2076..4219)
                     /gene="scpA"
                     /locus_tag="OQQ76_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417392.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
     gene            complement(4423..5316)
                     /gene="argP"
                     /locus_tag="OQQ76_000981"
     CDS             complement(4423..5316)
                     /gene="argP"
                     /locus_tag="OQQ76_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator ArgP"
                     /protein_id="HCS1967565.1"
                     /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN
                     MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL
                     ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG
                     ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC
                     HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES
                     RMMRKVTDALLDYGHKVLRQD"
     gene            5699..6358
                     /gene="rpiA"
                     /locus_tag="OQQ76_000982"
     CDS             5699..6358
                     /gene="rpiA"
                     /locus_tag="OQQ76_000982"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HCS1967566.1"
                     /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG
                     QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR
                     EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
                     VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
                     K"
     gene            6613..7845
                     /gene="serA"
                     /locus_tag="OQQ76_000983"
     CDS             6613..7845
                     /gene="serA"
                     /locus_tag="OQQ76_000983"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS1967567.1"
                     /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD
                     EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF
                     NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG
                     HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK
                     NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP
                     FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL
                     HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK
                     ALQAMKAIPGTIRARLLY"
     gene            8074..8133
                     /gene="ibsC"
                     /locus_tag="OQQ76_000984"
     CDS             8074..8133
                     /gene="ibsC"
                     /locus_tag="OQQ76_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsC"
                     /protein_id="HCS1967568.1"
                     /translation="MMRLVIILIVLLLISFGAY"
     gene            8466..8525
                     /locus_tag="OQQ76_000985"
     CDS             8466..8525
                     /locus_tag="OQQ76_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1967569.1"
                     /translation="MMRLAIILIVLLLISFPAY"
     gene            complement(8626..9228)
                     /locus_tag="OQQ76_000986"
     CDS             complement(8626..9228)
                     /locus_tag="OQQ76_000986"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HCS1967570.1"
                     /translation="MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQLEMGQQAATRMM
                     TYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVCLPVLHPFSAGNLLFLNYHPQ
                     SELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQ
                     HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW"
     gene            complement(9249..9432)
                     /gene="ssrS"
                     /locus_tag="OQQ76_000987"
     ncRNA           complement(9249..9432)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="OQQ76_000987"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(9474..9803)
                     /gene="zapA"
                     /locus_tag="OQQ76_000988"
     CDS             complement(9474..9803)
                     /gene="zapA"
                     /locus_tag="OQQ76_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HCS1967571.1"
                     /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER
                     TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE
                     KTNQNFE"
     gene            9971..10549
                     /gene="ygfB"
                     /locus_tag="OQQ76_000989"
     CDS             9971..10549
                     /gene="ygfB"
                     /locus_tag="OQQ76_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YgfB"
                     /protein_id="HCS1967572.1"
                     /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS
                     SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA
                     DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE
                     IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH"
     gene            10575..11900
                     /gene="pepP"
                     /locus_tag="OQQ76_000990"
     CDS             10575..11900
                     /gene="pepP"
                     /locus_tag="OQQ76_000990"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HCS1967573.1"
                     /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY
                     RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK
                     LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIMNSALEKLRKGSRQNLTAP
                     ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH
                     EFNRHGARYPSYNTIVGSGENGCILHYTENESELRDGDLVLIDAGCEYKGYAGDITRT
                     FPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG
                     DVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPG
                     AEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMAAARKQ"
     gene            11897..13075
                     /gene="ubiH"
                     /locus_tag="OQQ76_000991"
                     /gene_synonym="visB"
     CDS             11897..13075
                     /gene="ubiH"
                     /locus_tag="OQQ76_000991"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HCS1967574.1"
                     /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG
                     FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL
                     GQVVELHNVGQRLFALLRKAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVA
                     ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG
                     RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGKITHAGKRSAYPLALTRAARA
                     ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAHERGEDIGDYGILCRYQQ
                     RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR
                     "
     gene            13098..14300
                     /gene="ubiI"
                     /locus_tag="OQQ76_000992"
                     /gene_synonym="visC"
     CDS             13098..14300
                     /gene="ubiI"
                     /locus_tag="OQQ76_000992"
                     /gene_synonym="visC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent 2-octaprenylphenol hydroxylase"
                     /protein_id="HCS1967575.1"
                     /translation="MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADA
                     PPQLRVSAINAASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYS
                     HLGHIVENSVIHYALWNKAQQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLV
                     IGADGANSWLRNKADISLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS
                     DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA
                     RQFAAHRLVLVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR
                     YERSRKHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL
                     NDLPEWLR"
     gene            complement(14374..14457)
                     /locus_tag="OQQ76_000993"
     CDS             complement(14374..14457)
                     /locus_tag="OQQ76_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967576.1"
                     /translation="MSKNTKSKNNDIRKYNAKTEVKLVYFK"
     gene            14747..15841
                     /gene="gcvT"
                     /locus_tag="OQQ76_000994"
     CDS             14747..15841
                     /gene="gcvT"
                     /locus_tag="OQQ76_000994"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HCS1967577.1"
                     /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA
                     GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY
                     YFTEDLFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF
                     NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP
                     CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH
                     GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI
                     GETAIVQIRNREMPVKVTKPVFVRNGKAVA"
     gene            15865..16254
                     /gene="gcvH"
                     /locus_tag="OQQ76_000995"
     CDS             15865..16254
                     /gene="gcvH"
                     /locus_tag="OQQ76_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HCS1967578.1"
                     /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD
                     LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI
                     FKIKASDESELESLLDATAYEALLEDE"
     gene            16373..19246
                     /gene="gcvP"
                     /locus_tag="OQQ76_000996"
     CDS             16373..19246
                     /gene="gcvP"
                     /locus_tag="OQQ76_000996"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HCS1967579.1"
                     /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ
                     IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM
                     LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM
                     AKRVSKLKNSNRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ
                     QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP
                     MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI
                     CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC
                     VEVADKAGVLARAEAAEINLRSDILNAVGITLDETTTRENVMQLFSVLLGDNHGLEID
                     TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP
                     LGSCTMKLNSAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC
                     MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC
                     DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG
                     ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV
                     QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD
                     AFPVLYTGRDGRVAHECILDIRPLKEETSISELDIAKRLIDYGFHAPTMSFPVAGTLM
                     VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP
                     YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ"
     gene            19512..20255
                     /locus_tag="OQQ76_000997"
     CDS             19512..20255
                     /locus_tag="OQQ76_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1967580.1"
                     /translation="MAIALVTGGSRGIGRATALLLAKEEYTVAVNYQQNLHAAQEVVN
                     LITQAGGKAFVLQADISDENQVIAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAE
                     RINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK
                     GAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGELGRVDRVKSNIPMQRGGQA
                     EEVAQAIVWLLSDKASYVTGSFIDLAGGK"
     gene            complement(20312..21745)
                     /gene="bglA"
                     /locus_tag="OQQ76_000998"
     CDS             complement(20312..21745)
                     /gene="bglA"
                     /locus_tag="OQQ76_000998"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase BglA"
                     /protein_id="HCS1967581.1"
                     /translation="MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHG
                     VPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA
                     QPNEEGLKFYDSLFDELLKYNIEPVITLSHFEIPLHLVQQYGSWTNRKVVDFFVRFAE
                     VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFV
                     ASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGY
                     YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMINAVKAEGGTGDAISGFE
                     GSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGCIND
                     DYRIDYLRAHIEEMKKAVTYDGVDLMGYTLWGCIDCVSFTTGQYSKRYGFIYVNKHDD
                     GTGDMSRSRKKSFNWYKEVIASNGEKL"
     gene            21790..22101
                     /locus_tag="OQQ76_000999"
     CDS             21790..22101
                     /locus_tag="OQQ76_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HCS1967582.1"
                     /translation="MQPNDITFFQRFQDDIMAGRKTITIRDESESHFKTGDVLRVGRF
                     EDDGYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELIKVIADIYPGQTQFYVIEFKC
                     L"
     gene            22265..22924
                     /locus_tag="OQQ76_001000"
     CDS             22265..22924
                     /locus_tag="OQQ76_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HCS1967583.1"
                     /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL
                     NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF
                     LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA
                     VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIGQ
                     A"
     gene            complement(23120..24100)
                     /gene="ygfZ"
                     /locus_tag="OQQ76_001001"
     CDS             complement(23120..24100)
                     /gene="ygfZ"
                     /locus_tag="OQQ76_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-modifying protein YgfZ"
                     /protein_id="HCS1967584.1"
                     /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ
                     VTADVSQMTENQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA
                     VFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSREKQVVKEGATTLLWFEHPAER
                     FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA
                     LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT
                     GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE"
     gene            24343..24609
                     /gene="sdhE"
                     /locus_tag="OQQ76_001002"
     CDS             24343..24609
                     /gene="sdhE"
                     /locus_tag="OQQ76_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD assembly factor SdhE"
                     /protein_id="HCS1967585.1"
                     /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI
                     RLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRERGPVAI"
     gene            24590..24997
                     /locus_tag="OQQ76_001003"
     CDS             24590..24997
                     /locus_tag="OQQ76_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin CptA"
                     /protein_id="HCS1967586.1"
                     /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV
                     LLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD
                     GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR"
     gene            complement(25037..25558)
                     /gene="fldB"
                     /locus_tag="OQQ76_001004"
     CDS             complement(25037..25558)
                     /gene="fldB"
                     /locus_tag="OQQ76_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldB"
                     /protein_id="HCS1967587.1"
                     /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME
                     QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALG
                     MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW
                     CEQILNEMAEHYA"
     gene            25670..26566
                     /gene="xerD"
                     /locus_tag="OQQ76_001005"
     CDS             25670..26566
                     /gene="xerD"
                     /locus_tag="OQQ76_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HCS1967588.1"
                     /translation="MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG
                     LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS
                     PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
                     SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM
                     TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT
                     QIYTHVATERLRQLHQQHHPRA"
     gene            26591..27301
                     /gene="dsbC"
                     /locus_tag="OQQ76_001006"
     CDS             26591..27301
                     /gene="dsbC"
                     /locus_tag="OQQ76_001006"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HCS1967589.1"
                     /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV
                     AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGAAPVNVTNKMLLKQLNALEKEMIVYK
                     APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLESQAEQQMKAIW
                     CAKDKNKAFDDVMAGKAATPASCDIDIADHYALGVQLGVSGTPAIVLSNGTLVPGYQP
                     PKEMKEFLDEHQKMTSGN"
     gene            27307..29040
                     /gene="recJ"
                     /locus_tag="OQQ76_001007"
     CDS             27307..29040
                     /gene="recJ"
                     /locus_tag="OQQ76_001007"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HCS1967590.1"
                     /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS
                     VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN
                     IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD
                     HHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIA
                     IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ
                     KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ
                     GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG
                     DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFG
                     ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ
                     QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS
                     LQIIIDNIWPI"
     gene            29131..30229
                     /gene="prfB"
                     /locus_tag="OQQ76_001008"
     CDS             join(29131..29205,29207..30229)
                     /gene="prfB"
                     /locus_tag="OQQ76_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311790.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HCS1967591.1"
                     /translation="MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP
                     DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAE
                     LDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG
                     FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS
                     SAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN
                     DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DLRTGVETRNTQAVLDGSLDQFIEASLKAGL"
     gene            30239..31756
                     /gene="lysS"
                     /locus_tag="OQQ76_001009"
     CDS             30239..31756
                     /gene="lysS"
                     /locus_tag="OQQ76_001009"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HCS1967592.1"
                     /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH
                     TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD
                     DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
                     QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA
                     AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT
                     MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK
                     KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITE
                     YPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG
                     DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK"
     gene            complement(31799..32347)
                     /gene="idi"
                     /locus_tag="OQQ76_001010"
     CDS             complement(31799..32347)
                     /gene="idi"
                     /locus_tag="OQQ76_001010"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HCS1967593.1"
                     /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKG
                     QLLVTRRALSKKAWPGVWTNSVCGHPQLGECNEDAVIRRCRYELGVEITPPESIYPDF
                     RYRATDPNGIVENEVCPVFAARTNSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
                     WMVMQAANSEARKLLSAFAQHN"
     gene            32402..32473
                     /locus_tag="OQQ76_001011"
     CDS             32402..32473
                     /locus_tag="OQQ76_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967594.1"
                     /translation="MINQVSVYRQPPVLSGCRQVKTI"
     gene            complement(32470..32595)
                     /locus_tag="OQQ76_001012"
     CDS             complement(32470..32595)
                     /locus_tag="OQQ76_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967595.1"
                     /translation="MNLLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF"
BASE COUNT         7707 a         8242 c         8839 g         7838 t
ORIGIN      
        1 cggacgatgt ttgatatggc gcacgccagg aaacagcatc ggcgtcagaa agtacatcgt
       61 cagcggcggc gctgattgac gcccccgtca gcaggcgaat ttgatacggc tttttggcct
      121 catgctgttc gttagctctg cgggcaatcg cggtgggtag ggctttcggc gaacccgccg
      181 gggtaaagcc gctaaatgcc accatgtcgt tatgctggat aatttctgcc gcttcatcgg
      241 cggtcatcct tgtccactga gtttccattt ttactccttc gttcgcaggg attaatgacc
      301 aacgaaatta ggtttacgtt tttcgaggaa agcgttcatt ccttcctggt aatcttcgct
      361 gtcataaacc gcgcgtcgca tcccctgaat acgttcaaat tcatcggagt tcatggtgtg
      421 cgcttcgccc agtacacgca gctcttcttt gataacagca atggctaacg gcgctttctc
      481 agagatgtgg tgcgccattt gtaaggtgaa atcttccagt tcttccactt ccacaacatg
      541 gttgaggatg ccgacagcca gcgcgcgctg ggcggtgatt ggcgaagcgg taaaaatcag
      601 ctctttgaca atgtggaagc ccgcgtcgcg ggtcaggttg tgaatgccga ccaggttata
      661 cgggacgccg aggtttacag gcgtcattga gaaggttgag gtactggcgg cgatgatcag
      721 atcggaactc atgatcattt caaatgcgcc accccaaaca ctaccttcca ccatcgaaat
      781 gatcggtttc gggaattttt ggatcatgcg ggtgatttga cgcaatggat catcatagga
      841 gagcggatcg cgaccgccag acggcagttc gtgaatatcg tgacctgcgg agaagacttt
      901 ggatccactc ggcgcgcgca aaatgataca gcgaatttcc ggccggttga gatcgcttaa
      961 cgcctgcata agatcatcaa taaagacttt acttaaggca ttaagttttc ggccatagtt
     1021 aaactcaatg accgccactt tgttgatagt ggcaacgttc acatactgat aagacataaa
     1081 aattccttta atcaaaatat tgcgtctgga taaattcact gagctgccgc aggccggtgc
     1141 gcggtgagag cgtattgttt ttgaccgcta aaagcgtctg gcggtaatag cgatcgaaat
     1201 cttcattcgc gaacaggtga ttcagtactt cttcttcggt ctgcttacgc agccattcca
     1261 ccgattgttg ttgccgcact tgttgtaaac gaccactggc agttagcgcg gttttgaact
     1321 cgatgatggc gtgccagatc tcatcgattc cacgtttttc cagtgcgcta caagtcagaa
     1381 cccgtggctg ccattcgtcg tatttacgtc gcagaatatg cagggcactc tcgtacatat
     1441 gccgggcaat ggcgacattg gtatggttat cgccatcgtc tttgttgata acgatcagat
     1501 cagccacttc catcagccct tttttaatgc cctgcagatc atcgccgcca ccggcaattt
     1561 gcaacgagat aaaacagtcc accatgcggg cgacttctgt ttccgactgc ccgacgccaa
     1621 ccgtttcgac aatcactacg tcataacccg ccgcttcgca taacagcatt aattcccgcg
     1681 ctcgctgact ggcaccgccc agatgaccgg aggatggtac cgggcgaata aacgccgctt
     1741 cggcacgcgc caggtcattc atgcggattt tatccccgag aatgctaccg ccagtgaccg
     1801 ggctgctggg atcgaccgca ataaccgcga cctttaatcc ctctcgaatc aacaacatgc
     1861 caaaggcctc aagaaaggta cttttccccg cgctgggggt gccggtaacg cccagtcgca
     1921 gggtgttacc gcagtacggc ataatggcat caagcagctg cgtacttagt gcctgatgac
     1981 gcgggtgacg gctttccacc agcgtcatgg cctgggcgag tgtggcacgc tcaccctgac
     2041 gtaagcggcg aatactttct gccagcgtgg cttcattaat catgatgctg gcttatcaga
     2101 ttcagtacgt cgcgcacact gtcgagcata ggtgtacctg gaccataaat cgcgccacgc
     2161 cgcgctcttg caggaaggcg taatcctgcg gtggaatgac gccaccggcg actacgcaga
     2221 tatcttcgcg tccccatttt ttcagcgcct cgaccagttc cgggatcagc gttttatgac
     2281 cggcagccag tgaggatgcg cccactacgt gaacgtcatt ttctactgcc aggcgggcga
     2341 tctcttcagg tgtagagaac atcgggctta aatctacgtc gaaaccgaga tcggaatagg
     2401 cgctggcgat cactttcgag ccgcgatcgt gcccatcctg gcccattttg gcgatcagaa
     2461 tgcgcgggcg acgaccattg tcggcaagga actgctccgt ttgcgcaaca atggcatcga
     2521 actcggaggc cgatttctca gattgatgat agctttgcgc aatcacgccg gtaacacact
     2581 ggcttggcac cagataacgg tcgaaagcgg cttccagcgc atcggaaatt tcacccaggg
     2641 tggcgcgaac gcgagcggca ttaacagcgg cagccagcag gttttcgtta tgctgtgcgg
     2701 cgtgagtcag ggcgttcaac gcggcggtta cggcggcatc atcacgggtg gcgcgaatgc
     2761 gttccagcaa agcaatttgc tcgttacgca ccatcacgtt gtcgatctca agtacatcgg
     2821 tttcgtcttc gtgatccagt ttgtacttgt tgacaccaac gatgacacgt ttgccctggt
     2881 cgataagcga ctgttcgcgc gctgaggcct attcgatcat tcgttttggc agacctgctt
     2941 cgatcgcttt cgccatacca ccggcttcgt cgatctgttg gataatagct ctggcttgtt
     3001 tgacgatttg atcggtcagc gactcaatgt aataggatcc ggccagtgga tcgacggtgc
     3061 ggcagagttc tgattcttcc tggatgatga tctgggtgtt gcgggcaatg cgtgctgaga
     3121 aatcggtagg caaaccaagc gcttcgtcaa aggcgttggt atgcagtgac tgagtaccgc
     3181 ccagcgtcgc agccagtgct tcaatggtgg tgcggataac gttgttatac ggatcctgtt
     3241 cagtcaggct ccagcctgag gtctggcagt gggtacgcag cgccagtgat ttcgggtcct
     3301 gtgcgccaaa tccactgacc gcttcgctcc ataaataacg tgccgcacgc aacatggcga
     3361 cgttcataaa cagatccatg ccgatgccga agaagaacga caggcgagga gcgaagtcat
     3421 caattttcag tccggcagag attgctgctt tgatgtactc aatcccatca gcgagcgtaa
     3481 atgctacctg ctgcacgcag ttggcacccg cttcacccat gtggtaaccg ctgatactga
     3541 tggtattaaa tcgcggcatg ttgccggaac accaggcgat gatgtcggcg ataatgcgca
     3601 ttgacggttt tggcgggtaa atataggtgt tgcggcagag gtactctttg aggatatcgt
     3661 tctgaatggt gccggtcagt ttatcaggtg taacaccttg ctcttccgcg gcgacgatat
     3721 aaaacgccag tactggtagc actgcgccat tcatggtcat cgaaaccgac attttatcca
     3781 gcgggatctg gtcgaacagg actttcatat cttccacggt gtcgatagcg acgcccgctt
     3841 tgccgacgtc gcccgccacg cgcgggttat cggagtcgta gcctcggtgg gtggcaaggt
     3901 caaacgcaac ggaaagacct ttttacccgg cggccaggtt acggcgataa aaagcgttgg
     3961 actcttttgc tgttgaaaaa ccagcatact gacggatggt ccacggttgg gcggtataca
     4021 tagtggcacg cgggccacga acgtagggcg gcaaaccagg aagggtacct gtcacctcca
     4081 gattatcgag atcggcttcg gtatacagcg gcttgatggt gatcccttcc gcggtttgct
     4141 gaaccagcga gtcgacagtt ttctcccgac ggctcaattc cttgttggca agctgttgcc
     4201 actcctgcac gttagacatt atttgctccg taaaacgcaa tcaaaatgag ggtatttgcg
     4261 cctacggtga gctttttacg tgggtttgtc gccagcaaaa aaaaagcatt cagacgtcgt
     4321 tttttgccgc ctgagatttg tctattttgt gatgtgattc aaggaataca aaaagaagtg
     4381 aggacaacgc ctgatatgtg ctatcaggca ttatttgatg gattaatcct gacgaaggac
     4441 tttgtgacca taatcgagca acgcatcagt gactttacgc atcatgcggc tttcaggagc
     4501 aaagcggtgc cagtagagca tccggcgttg aaatagccct ggcgttaagt caatcagttc
     4561 accgctggct agttctttct cgatttgcag gtgcgggatc atacagcagg tggtgccctg
     4621 gcgagcaagt tgcacgaacg cttctgaaga attaacgata tggcagggca cgctgcctgg
     4681 aggcagatcg aagttttgct gcaaaaaggc ctggtgcata tcgtcaagat ggtcaaaggc
     4741 gaccacaggt gctttcaata atgccgaacg cgttacgccg ttagggaaat atttttcggc
     4801 aaacggtttt gagctgacga acagatagtc aagcgcaccg agcttatcga caaggcaact
     4861 cggcagcgcc tgatgttgaa tactcaccgc gccgaccact tcgccgcggc gcagacgttc
     4921 ctgagtacgg gtttcatctt ctacctgcaa gttgaggcgg ataggcgaat cagccaatac
     4981 aggagccagt gccggaagca accacgtcgc cagactgtcg gcgttgaccg ccagtgaaag
     5041 cagcagcgga gtcgaaccgg tttgttcatc gcccagccac tcttcttcca gcaactccac
     5101 ctggcgcagc agtgccagca gtttttgccc ttgttccgtc gggcgcggcg gtacggtacg
     5161 caccaacagc ggctgcccga acatattttc cagttgctta atgcgctgtg agacggctga
     5221 ttgtgtaatg cacagctttt gtgccgcgcg ctcaaatcct cgttcacgta tcaccgcatc
     5281 cagtgcctgt aatgttctgt agtccgggcg tttcattgct gttgtctgct cctggtaaat
     5341 gctttttcct gcactatgac acaattttgt gtcaggttgc atataccgca gccgtcggcg
     5401 ggtaacattt gtatcaatgg ttaaacgcgc agcttaaaag atcagggatt tgcgctattg
     5461 catttcgctt agcgacttcg cgccctggtt atgttgaatg gcgtggcgtt attgcctctg
     5521 tttgcaccgt ggagcggcat acccagaccg ttgtatgctt tatttgcggg gcgaaagggg
     5581 atgcccgcca ttgcgcgata ttttatggat gagttaacca cccggcttgc caacggggtc
     5641 tgaatcgctt tttttgtata taatgcgtgt gaaatttcat accacaggcg aaacgatcat
     5701 gacgcaggat gaattgaaaa aagcagtagg atgggcggca cttcagtatg ttcagcccgg
     5761 caccattgtt ggtgtaggta caggttccac cgccgcacac tttattgacg cgctcggcac
     5821 gatgaaaggc cagattgaag gggccgtttc cagttcagat gcttccactg aaaaactgaa
     5881 aagcctcggc attcacgttt ttgatctcaa cgaagtcgac agccttggca tctacgttga
     5941 tggcgcagat gaaatcaacg gccacatgca aatgatcaaa ggcggcggcg cggcgctgac
     6001 ccgtgaaaaa atcattgctt cggttgcgga aaaatttatc tgtattgccg acgcctccaa
     6061 gcaggttgat attctgggta aattcccgct gccagtagaa gttatcccga tggcacgtag
     6121 tgcagtggcg cgccagctgg tgaaactggg cggtcgtccg gaataccgtc agggcgtggt
     6181 gaccgataat ggcaacgtga tcctcgacgt ccacggcatg gaaatccttg acccgatagc
     6241 gatggaaaac gccataaatg cgattcctgg cgtggtgact gttggcttgt ttgctaaccg
     6301 tggcgcggac gttgcgctga ttggcacacc tgacggtgtc aaaaccattg tgaaatgatc
     6361 tgacggggga acctcccccg ttaaaaaaat tctcttcatt aaatttggtg acatgtgtca
     6421 cgtttttacc tggctattgt cgattgctct aaataaatcc tctaaaccag catattcaac
     6481 caagaaatac ctttgcgtga tatttcctca acatcgcgac gcaaacgttc atattgccgc
     6541 aatattattt tttgatatgt tgaaaggcgg atgcaaatcc gcacacaaca tttcaaagac
     6601 aggattgggt aaatggcaaa ggtatcgctg gagaaagaca agattaagtt tctgctggta
     6661 gaaggcgtgc accaaaaggc gctggaaagc cttcgtgcag ctggttacac caacatcgaa
     6721 tttcacaaag gcgcgctgga tgatgaacaa ttaaaagaat ccatccgcga tgcccacttc
     6781 atcggcctgc gatcccgtac ccatctgact gaagacgtga tcaacgccgc agaaaagctg
     6841 gtcgctattg gctgtttctg tataggaaca aaccaggttg atctggatgc ggcggcaaag
     6901 cgcgggatcc cggtatttaa cgcaccgttc tcaaatacgc gctctgttgc ggagctggtg
     6961 attggcgaac tgctgctgct attgcgcggc gtgccggaag ccaatgctaa agcgcaccgt
     7021 ggcgtgtgga acaaactggc ggcgggttct tttgaagcgc gcggcaaaaa gctgggtatc
     7081 atcggctacg gtcatattgg tacgcaattg ggcattctgg ctgaatcgct gggaatgtat
     7141 gtttactttt atgatattga aaataaactg ccgctgggca acgccactca ggtacagcat
     7201 ctttctgacc tgctgaatat gagcgatgtg gtgagtctgc atgtaccaga gaatccgtcc
     7261 accaaaaata tgatgggcgc gaaagaaatt tcactaatga agcccggctc gctgctgatt
     7321 aatgcttcgc gcggtactgt ggtggatatt ccggcgctgt gtgatgcgct ggcgagcaaa
     7381 catctggcgg gggcggcaat cgacgtattc ccgacggaac cggcgaccaa tagcgatcca
     7441 tttacctctc cactgtgtga attcgacaac gtacttctga cgccacacat tggcggttcg
     7501 actcaggaag cgcaggagaa tatcggcctg gaagttgcgg gtaaattgat caagtattct
     7561 gacaatggct caacgctctc tgcggtgaac ttcccggaag tctcgctgcc actgcatggt
     7621 ggtcgtcgtc tgatgcacat ccacgaaaac cgtccgggcg tgctaactgc gctgaacaaa
     7681 atcttcgccg agcagggcgt caacatcgcc gcgcaatatc tacaaacttc cgcccagatg
     7741 ggttatgtag ttattgatat tgaagctgac gaagacgttg ccgaaaaagc gctgcaggca
     7801 atgaaagcta ttccgggtac cattcgcgcc cgtctgctgt actaattccc cttctctgaa
     7861 aattaacggg caggtcactg acttgcccgt ttttttatcc cttctccaca ccgttgccgc
     7921 gttgcgcatt ctactttgcg agtctgctcc agaaaataaa tcaaagtcag atcaatgcgt
     7981 tgtgtttatt taatggggat ttacgatggc gggacagcat ggggctgtaa cggtaaagcc
     8041 ctcaccgaag cgagggctta aaggagaagg gttatgatgc gacttgtcat catactgatt
     8101 gtactgttac tgataagttt cggagcttat taacagtcag tctctgggga ggagtcatcc
     8161 tcccttaccc ttactcacta aattaggtca aagaatcaac gatgtcaatc agggcgatgc
     8221 ggggtgcatc gccctgaacc gaactttttg atagccactt catcgcccac gtttactgcc
     8281 gtaatagatc ctttttccca aaaattatct ctgttttgca tggggttttt cgaacacgct
     8341 cgaagaaaag atttaaaggt agatcaatgc gttgtggtta tttaaagaga gcttacgata
     8401 gctgggcagc atggggctgt aacggtaaag ccctcaccga agcgagggct tgaaggagaa
     8461 gggttatgat gcgacttgcc atcatactga ttgtactgtt actcataagt ttcccagctt
     8521 attaacagtc agtcacaggg gaggagcaat cctcccttac ccttactcac taaattaggt
     8581 taaagaatca acgatgtcaa tcagggcgat gcaggtgtat cgcccttacc actcccagac
     8641 tttcgacggt gtaaccaccg caggaagagg gatatcccac tcttcaacgg ggagtttttc
     8701 caccaactga caatcatgcg cataacccac cggttgcgtt ttatagtgct gccagttttg
     8761 taaggtccga tcataaaaac caccgcccat tcccaggcgc tgaccgtact catcaaaggc
     8821 gaccagcggt gtgatcagca cgtctaatcg ggaaaggggt agcacgtcac gcacatccag
     8881 ttttggctca tggattttca acctgttcat caccagttcg ctttgcggat ggtaattcag
     8941 gaacagcaaa ttaccagcac taaagggatg caaaactgga agacatacgc gcttaccggc
     9001 gcgccagagt tgttctatta gcggctgggt gtcgagttca ccatcaaaag agaggaatac
     9061 agcgaccgta tgcgccatca ccaccggggg ataagtcatc atccgggtag cggcttgttg
     9121 acccatttcc agctgttgtt ccggcgttaa cgcacgacga cgttgccgaa tcattttgcg
     9181 gatttcttgt cgggataatg tcagtgggag ttctggtagt tgcgtcatgg ctggtgccag
     9241 ataagaaggg aatctccgag atgccgccgc aggctgtaac ccttgaaccc ttggttcaag
     9301 gtgaatgtgt cgtcgcagtt ttaaggcttc tcggacggac cgagcatgct caccaaccgc
     9361 ggagcgccac attcttgtgg tatgaaatat cggctcaggg gactggcccg cttgcgaaca
     9421 tctcagagaa attttgtctt cacggttact ctaccacagt aaaccgaaaa gtgtcattca
     9481 aagttttggt tagttttttc ggtgatgcga ccttgttcaa gtaacgcttg ttctatggtc
     9541 tgctgcagca tccgaatacg ctgttccata cttgccgcgt agtcacgagt cttcgctttt
     9601 tcttgcgcta actcatagct gatattcaat gcggcaatga agaccaactg ttcagtattt
     9661 gtgactctag tgcgttcttt cagatcttgc aaccgttggt tcagatcgtc cgctgcctga
     9721 ttcaacgcat ccctttggtc aggcgggcag ttcacacgca gtgaacggcc aaaaatttgg
     9781 atatcgacgg gttgtgcaga catgccacct tcctgctgat tgactgcgct gccttcgtct
     9841 ttagacccat ggtctgcgaa ggggcgacac tatagctacc ctgatgagaa gagacaagcc
     9901 cttttctggt ccaccagggc ccaaagtggt agcatatcat gaatattcct ccctttgacg
     9961 acgaatgctt atgtctatac agaacgaaat gcctggttac aacgaaatga accagtatct
    10021 gaaccaacaa gggacgggtc tgacccctgc cgagatgcat ggtttaatca gtgggatgat
    10081 atgtggcggt aacgatgaca gctcatggct gccgctactt cacgacctga cgaacgaagg
    10141 catggctttc ggtcatgagc tggcacaggc actgcgtaaa atgcactctg ccaccagcga
    10201 tgccctgcag gatgacggct tcctttttca gctttatctg cctgatggcg atgatgtcag
    10261 cgttttcgat cgggctgatg cattggcagg ttgggtcaat cacttcctgc ttggtcttgg
    10321 cgttacgcaa ccgaagctgg ataaagtgac cggcgaaacc ggtgaagcta tcgacgatct
    10381 gcgtaacatt gcgcaactgg gttacgacga agacgaagat caggaagagc ttgaaatgtc
    10441 gcttgaagag atcatcgaat acgttcgtgt tgccgcgctg ttatgccacg acacctttac
    10501 tcatccgcaa ccgaccgcgc cagaagtaca aaaaccgact ctacactaaa aacaaaaaac
    10561 gtaaggagag tgttatgagt gagatatccc ggcaagagtt tcagcgtcgc cgtcaggccc
    10621 tggtggagca aatgcaaccc ggcagcgccg cgctgatttt tgctgcacca gaagtaacac
    10681 gtagcgccga cagcgaatac ccctatcgtc agaacagtga cttctggtac ttcaccggct
    10741 ttaacgaacc ggaagcggtg ctggtgctga ttaaaagcga tgacactcat aaccacagcg
    10801 ttctgtttaa ccgcgttcgc gacctgacgg cggagatctg gtttggccgt cgcttaggcc
    10861 aggatgccgc gccagagaaa ctgggcgttg accgcgcact ggcattcagc gaaatcaatc
    10921 agcaacttta tcaactactt aacggcctgg atgtggttta ccatgcccag ggcgaatatg
    10981 catatgctga tgaaatcatg aacagtgcgc tggaaaaact gcgtaaaggt tcgcggcaaa
    11041 atctcaccgc accggcaacg atgatcgact ggcgtcctgt tgttcatgaa atgcgcctgt
    11101 tcaaatcgcc agaagagatt gccgtactcc gccgcgcggg agaaatcacc gccatggcac
    11161 atacacgggc gatggaaaaa tgccgtccgg gaatgttcga gtaccatctg gaaggcgaaa
    11221 ttcaccacga atttaaccgc cacggtgcgc gctatccgtc ctataacacc attgtcggca
    11281 gcggtgaaaa cggctgcatt ctgcactaca ccgaaaacga gagtgaactg cgcgacggtg
    11341 acctggtgtt gattgacgcg ggttgtgaat acaaaggtta cgcgggcgat attacccgca
    11401 ccttcccggt caacggcaaa ttcacccagg cccagcgtga aatctacgac attgtgctgg
    11461 agtctctcga aaccagcctg cgcctgtatc gtccgggaac ttccattctg gaagtcactg
    11521 gtgaagtggt gcgcatcatg gttagcggcc tggtaaaact cggcattctg aaaggtgatg
    11581 ttgatgaact gatcgctcag aatgcccatc gtcctttctt tatgcatggc cttagccact
    11641 ggttagggct agatgtccat gacgttggcg tttatggtca ggatcgctcg cgcattctgg
    11701 aaccgggcat ggtactgacc gtagagcccg ggctgtatat tgcgccgggt gcagaagtgc
    11761 cagaacaata tcgcggtatc ggcattcgta ttgaagacga cattgtgatt accgaaaccg
    11821 gtaacgaaaa cctcaccgcc agcgtggtga aaaagccgga agaaattgaa gcgttgatgg
    11881 ctgctgcgag aaagcaatga gcgtaatcat cgtcggtggc ggcatggcgg gcgcgacgct
    11941 ggcgctggct atttcccggt taagtcacgg ggcgctgccg gtacatttga ttgaagcgac
    12001 tgcgccagag tcacatgctc atccgggctt tgatggacga gcgatagcgc tggcggcggg
    12061 tacctgtcag caactggcgc gcatcggcgt ctggcaatct ctggcggatt gcgcaactgc
    12121 catcaccacc gtgcatgtca gcgatcgtgg tcacgctgga tttgtcaccc tcgccgcaga
    12181 agattaccaa ctggcggcgc tgggacaggt tgtcgaattg cacaatgtcg ggcaacggct
    12241 gtttgcattg ctgcgtaaag cacctggcgt aacgctgcat tgccctgatc gcgtggctaa
    12301 cgttgcccgt actcagagtc acgttgaagt gacgctggag agtggcgaga cgctgacggg
    12361 ccgcgtgctg gtagcagctg atggcaccca ttcagcgtta gccaccgcgt gcggcgttga
    12421 ctggcagcag gagccttacg aacaactggc cgtgattgcc aacgttgcga cttccgttgc
    12481 gcacgaaggc cgcgcttttg aacgcttcac gcaacatggc ccgctggcga tgttgccgat
    12541 gtctgacgga cgctgttcgc tggtctggtg tcatccactg gaacggcgcg aagaggtgct
    12601 gtcgtggagc gacgagaagt tttgccgtga actccagtcg gcctttggct ggcgacttgg
    12661 aaaaattacc cacgccggta aacgcagtgc ttatccgctg gcgttaaccc gcgccgccag
    12721 agctattacc catcgtaccg tgctggtggg caatgcggcg caaactctgc acccgattgc
    12781 cgggcaaggg tttaacctcg gtatgcgaga tgtcatgagc cttgcggaaa ccctgactca
    12841 ggcgcatgag cgcggagaag acatcggtga ttacggcata ttgtgccgct atcagcagcg
    12901 tcgacagagc gatcgcgaag caaccatcgg cgtcacggac agcctggtac atctttttgc
    12961 caaccgttgg gcaccgctgg ttgtcgggcg caacatcgga ctgatgacga tggaattatt
    13021 caccccggca cgcgatgtgc tggcgcagcg caccctcggt tgggtggcgc gttgaaggcg
    13081 gttttaagga ataaacaatg caaagtgttg atgtagccat tgttggtggc ggcatggtgg
    13141 ggctggcggt tgcctgcggc ttacagggga gcggcttacg cgttgccgta ctggagcagc
    13201 gcgtaccgga acctctggcg gcggatgcac caccacaact gcgcgtttcg gctatcaatg
    13261 ccgccagcga aaaattactc acccgtcttg gcgtctggca ggacattctc tctcgtaggg
    13321 ccagttgtta tcacggtatg gaagtgtggg acaaagacag ttttggtcac atttcgtttg
    13381 acgatcaaag catgggctat agccatcttg ggcatatcgt tgaaaactca gtgattcact
    13441 acgcgctgtg gaacaaagcg cagcagtcgt cagatatcac tctgttggcc cccgcagaat
    13501 tacagcaggt cgcctgggga gaaaatgaaa ctttcctgac gctgaaagat ggcagcatgt
    13561 taacggcgcg tctggtgatt ggcgcggacg gtgctaattc ctggttgcgc aacaaagcag
    13621 atatttcgct gactttctgg gattatcagc atcacgcgct ggtagcgacc attcgcacgg
    13681 aagaaccgca tgatgcggtg gcgcggcagg ttttccatgg cgaaggcatt ctggcctttt
    13741 taccgcttag cgatccgcat ctttgctcaa ttgtctggtc actgtcgcca gaggaagcgc
    13801 agcggatgca gcaggcaagt gaagatgaat ttaatcgcgc gttaaatatc gcttttgata
    13861 atcgcctggg cttatgcaag gttgagagcg cgcgtcaggt gttcccactg acggggcgtt
    13921 atgcgcgcca gtttgccgcg caccgtctgg tgctagtggg cgacgccgcg cataccattc
    13981 acccgctggc ggggcaggga gtaaatctcg gctttatgga tgctgcagag ctgattgctg
    14041 aactgaaacg gttgcatcgt caggggaaag acatcgggca gtacatttac ctgcgccggt
    14101 atgagcgtag ccgcaagcac agtgcggcgc tgatgctggc tggtatgcag ggattccgcg
    14161 atctgttttc cggtaccaat ccggcgaaaa aactgctgcg tgatattggt ttgaaactgg
    14221 ccgacacgct tcctggcgtt aaaccacaac ttatccgcca ggcaatggga ttaaacgatt
    14281 tgcctgaatg gctgcgttaa aaatttctct tctgctgttt atttgatacc catcacactt
    14341 tcatctcccg gttttttcgc cgggagattt tcctcatttg aaataaacta atttcacctc
    14401 cgttttcgca ttatattttc taatgtcatt attttttgat ttagtgtttt ttgacatttt
    14461 tttagctctt aatattgcct tattcaaatt agctttctaa tggcatcatc tttatataga
    14521 aactggtgtg ttttttggtt ttttattctg tcgcgatttt ggcgtttttt aaccataagc
    14581 taatgtgatg atcaatttta ccttatggtt aacagtctgt ttcggtggta agttcaggca
    14641 aaagagaacg attgcgttgg ggaccgggag tggctccgat gctgggtttc gtggtgataa
    14701 tttcaccatg aaaagttgtc agccccgctt attcaatgag gacaagatgg cacaacagac
    14761 tcctttgtac gaacaacaca cgctttgcgg cgctcgcatg gtggatttcc acggctggat
    14821 gatgccgctg cattacggtt cgcaaatcga cgaacatcat gcggtacgta ccgatgccgg
    14881 aatgtttgat gtgtcacata tgaccatcgt cgatctccgc ggcagccgca cccgggagtt
    14941 tctgcgttat ctgctggcga acgatgtggc gaagctcacc aaaagcggca aagcccttta
    15001 ctcggggatg ttgaatgcct ctggcggtgt gatagatgac ctcatcgtct actactttac
    15061 tgaagattta ttccgcctcg ttgttaactc cgccacccgc gaaaaagacc tctcctggat
    15121 tacccaacac gctgaacctt tcggcatcga aattaccgtt cgtgatgacc tttccatgat
    15181 tgccgtgcaa gggccgaatg cgcaggcaaa agctgccaca ctgtttaatg acgcccagcg
    15241 tcaggcggtg gaagggatga aaccgttctt tggcgtgcag gcgggcgatc tgtttattgc
    15301 caccactggt tataccggtg aagcgggcta tgaaattgcg ctgcccaatg aaaaagcggc
    15361 cgatttctgg cgtgcgctgg tggaagcggg tgttaagcca tgtggcttgg gcgcgcgtga
    15421 cacgctgcgt ctggaagcgg gcatgaatct ttatggtcag gagatggacg aaactatttc
    15481 tcctttagcc gccaacatgg gctggactat cgcctgggaa ccggcagatc gtgactttat
    15541 cggtcgtgaa gccctggaag tgcagcgtga gcatggtaca gaaaaactgg ttggtctggt
    15601 gatgaccgaa aaaggcgtgc tgcgtaatga actgccggta cgctttaccg atgcgcaggg
    15661 caaccagcat gaaggcatta tcaccagcgg tactttctcc ccgacgctgg gttacagcat
    15721 tgcgctggcg cgcgtgccgg aaggtattgg cgaaacggcg attgtgcaaa ttcgcaaccg
    15781 tgaaatgccg gttaaagtga caaaacctgt ttttgtgcgt aacggcaaag ccgtcgcgtg
    15841 atttactttt ttggagattg attgatgagc aacgtaccag cagaactgaa atacagcaaa
    15901 gaacacgaat ggctgcgtaa agaagccgac ggcacttaca ccgttggtat taccgaacat
    15961 gctcaggagc tgttaggcga tatggtgttt gttgacctgc cggaagtggg cgcaacggtt
    16021 agcgcgggcg atgactgcgc ggttgccgaa tcagtaaaag cggcgtcaga catttatgcg
    16081 ccagtaagcg gtgaaatcgt ggcggtaaac gacgcactga gcgattcccc ggaactggtg
    16141 aacagcgaac cgtatgcagg tggctggatc tttaaaatca aagccagcga tgaaagcgaa
    16201 ctggaatcac tgctggatgc gaccgcatac gaagcattgt tagaagacga gtaacggctt
    16261 tattcctctt ctgcgggaga ggatcagggt gaggaaaatt tatgcctcac cctcactctc
    16321 ttcgtaagga gagaggttca caattcactg cacgtttcag gaaccatcgc tcatgacaca
    16381 gacgttaagc cagcttgaaa acagcggcgc ttttattgaa cgccatatcg gaccggacgc
    16441 cgcgcaacag caagaaatgc tgaatgccgt tggcgcacaa tcgttaaacg cgctgaccgg
    16501 ccagattgta ccgaaagata ttcagcttgc gaccccgccg caggttggcg caccggcgac
    16561 cgaatacgcc gcactggcag aactcaaggc tattgccagt cgcaataaac gcttcacgtc
    16621 ttacatcggc atgggttaca ccgccgtgca gctaccgccg gttatcctgc gtaacatgct
    16681 ggaaaatccg ggctggtata ccgcgtacac tccgtatcaa cctgaagtct cccagggccg
    16741 ccttgaagca ctgctcaact tccagcaggt aacgctggat ttgactggac tggatatggc
    16801 ctctgcttct cttctggacg aggccaccgc tgccgccgaa gcaatggcga tggcgaaacg
    16861 cgtcagcaaa ctgaaaaatt ccaaccgctt cttcgtggct tccgatgtgc atccgcaaac
    16921 gctggatgtg gtccgtactc gtgccgaaac ctttggtttt gaagtgattg tcgatgacgc
    16981 gcaaaaagtg ctcgaccatc aggacgtctt cggcgtgctg ttacagcagg taggcactac
    17041 cggtgaaatt cacgactaca ctgcgcttat tagcgaactg aaatcacgca aaattgtggt
    17101 cagcgttgcc gccgatatta tggcgctggt gctgttaact gcgccgggta aacagggcgc
    17161 ggatattgtt tttggttcgg cgcaacgctt cggcgtgccg atgggctacg gtggcccaca
    17221 cgcggcattc tttgcggcga aagatgaata caaacgctca atgccgggcc gtattatcgg
    17281 tgtatcgaaa gatgcagctg gcaataccgc gctgcgcatg gcgatgcaga ctcgcgagca
    17341 acatatccgc cgtgagaaag cgaactccaa catttgtact tcccaggtac tgctggcaaa
    17401 catcgccagc ctgtatgccg tttatcacgg cccggttggc ctgaaacgta tcgctaaccg
    17461 cattcaccgt ttgaccgata tcctggcggc aggcctgcaa caaaaaggtc tgaagctgcg
    17521 ccatgcgcac tatttcgaca ctctgtgtgt ggaagtggcc gacaaggcgg gcgtactggc
    17581 gcgtgccgaa gcggctgaaa tcaacctgcg tagcgatatc ctgaacgcgg ttgggatcac
    17641 ccttgatgaa accaccacgc gtgaaaacgt aatgcagctt ttcagcgtgc tgctgggcga
    17701 taaccacggg ctggagatcg acacgctgga caaagacgtg gctcacgaca gccgctctat
    17761 tcagcctgcg atgctgcgcg acgacgaaat cctcactcat ccggtgttta atcgctacca
    17821 cagcgaaacc gaaatgatgc gctatatgca ctcgctggag cgtaaagatc tggcgctgaa
    17881 tcaggcgatg atcccgctgg gttcctgcac catgaaactg aactccgccg ccgagatgat
    17941 cccaatcacc tggccggaat ttgccgaact gcacccgttt tgcccgccgg aacaggctga
    18001 aggttatcag cagatgattg cgcagctggc tgactggctg gtgaaactga ccggttacga
    18061 cgccgtttgt atgcagccga actccggcgc acagggcgaa tacgcgggcc tgctggcgat
    18121 tcgtcattat catgaaagcc gcaacgaagg gcatcgcgat atctgcctga tcccggcttc
    18181 tgcgcacgga actaaccccg cttctgcaca tatggcagga atgcaggtgg tggttgtggc
    18241 gtgtgataaa aacggcaaca tcgatctgac tgatctgcgc gcgaaagcgg aacaggcggg
    18301 cgataacctc tcctgtatca tggtgactta tccctctacc cacggcgtgt atgaagaaac
    18361 gatccgtgaa gtgtgtgaag tcgtgcatca gttcggcggt caggtttacc ttgatggcgc
    18421 gaacatgaac gcccaggttg gcatcacctc gccgggcttt attggcgcgg acgtttcgca
    18481 cctcaacctg cataaaactt tctgcattcc gcacggcggt ggtggtccgg gtatgggacc
    18541 gatcggtgtg aaagcgcatc tggcaccgtt tgtaccgggt catagcgtgg tgcaaatcga
    18601 aggcatgtta acccgtcagg gcgcagtttc tgcggcaccg ttcggtagcg cctctatcct
    18661 gccaatcagc tggatgtaca tccgcatgat gggcgcagaa gggctgaaaa aagcaagcca
    18721 ggtggcaatc ctcaacgcca actatattgc cagccgcctg caggatgcct tcccggtgct
    18781 gtataccggt cgcgacggtc gcgtggcgca cgaatgtatt ctcgatattc gcccgctgaa
    18841 agaagaaacc agcatcagcg agctggatat tgccaagcgc ctgatcgact acggtttcca
    18901 cgcgccgacg atgtcgttcc cggtggcggg tacgctgatg gttgaaccga ctgaatctga
    18961 aagcaaagtg gaactggatc gctttatcga cgcgatgctg gctatccgcg cagaaattga
    19021 ccaggtgaaa gccggtgtct ggccgctgga agataacccg ctggtgaacg cgccgcacat
    19081 tcagagcgaa ctggtcgccg agtgggcgca tccgtacagc cgtgaagttg cggtattccc
    19141 ggcaggcgtg gcagacaaat actggccgac ggtgaaacgt ctggatgatg tttacggcga
    19201 ccgtaacctg ttctgctcct gcgtaccgat tagcgaatac cagtaattca ctgattcgac
    19261 tattttctaa aggagcttcg gcgccttttt agtcagatga caaagtacaa aagtgctcag
    19321 acagtcccct cgcccctttg gggagagggt tagggtgagg ggaacaggcc ggcactggcg
    19381 cgaatattta ccctcacccc ggccctctcc ctgaaagggc gaggggaaaa gcgtgccaac
    19441 attgaagatt gagccagttt gttagcaatc tcaaagatac gtcaacgaat taatttttct
    19501 cggaaaaaca aatggctata gcacttgtga ccggtggcag tcgcggcatc gggcgggcaa
    19561 ctgcattact gttggcgaaa gaagagtata cggtggcggt taattatcaa caaaacctcc
    19621 atgcggcgca ggaagtggtg aacttaatca cgcaagccgg tggcaaggca ttcgtgctcc
    19681 aggcggatat cagcgacgaa aatcaggtca tcgcaatgtt tacagcaatc gatcagcacg
    19741 atgaaccgct agcagcgctg gtcaataacg ccgggatctt gtttacccag tgcaccgttg
    19801 aaaaccttac cgcagagcga atcaaccgag tactttccac caacgtgacg ggatattttc
    19861 tctgctgccg cgaggcggta aaacgcatgg cgcttaaaaa tggtggcagt ggcggcgcta
    19921 tcgtcaatgt ctcttcggtg gcctcacggt tgggttcgcc aggggaatat gttgattacg
    19981 cggcatcgaa aggggcgatt gatacgttaa ccaccggact atcgctggaa gtcgccgcgc
    20041 aggggatccg cgttaactgc gtgcggccag ggtttattta taccgaaatg cacgccagcg
    20101 gcggcgagct tggacgcgtc gatcgcgtta agtcgaacat ccccatgcag cgtggtggac
    20161 aggcagaaga ggtcgcgcag gccattgtct ggctactaag tgataaagcc tcttacgtca
    20221 cgggaagttt tatcgatttg gcgggcggga aataaaacag ggaagttgtc tgaccggatg
    20281 caacaagtat tgcatccggt acttcatcga cttaaagctt ctcgccgttg ctggcaatca
    20341 cctctttgta ccagttaaag ctcttcttac gtgaacgcga catatcgcca gtaccgtcgt
    20401 catgtttatt cacatagata aagccgtagc gtttgctgta ctgcccggta gtgaatgaca
    20461 cgcagtcgat gcagccccac agtgtgtagc ccatcagatc cacaccatcg taagtcactg
    20521 cttttttcat ctcttcaata tgggcgcgca ggtagtcaat gcggtagtcg tcgttgatgc
    20581 agccatcttc ttccactttg tcgtaagcgc caaaaccgtt ttcgacaata aacagcggcc
    20641 tctgatagcg ctcatacagt tcgcaaaggg catagcgcag acctactgga tcaatctgcc
    20701 agccccagtc agacgcttta acatacgggt tcggtacgct gccttcaaaa ccagagatcg
    20761 catcgccggt gccgccttcg gccttcactg cgttgatcat gtaatagctg aaaccaagat
    20821 aatcgcaggt gccttcacgc agtacatcca gatcgccatc ttccattttg atgttaaatc
    20881 cgcgacgctc ccactcgttc aacacatagg acgggtaata gccgcgtagc tgcacatcgg
    20941 taaagacgta gcgttcgcgc atcgactcct gagcgaacat cacatcgtcc gggttacagg
    21001 agtaaggata gagcggcacc atcgccagca tacagccgac tttcatctcc gggttaatgc
    21061 gacgcgcggc tttcactgcc agggcgctgg cgacaaactg gtgatgcagc acctggtaca
    21121 tcgtctcttc cgggttgtca tgctcggtat acaccacgcc ggagcagcag taaccaaaca
    21181 gcggcgcacg ccagttacgc tggttgttta tttcgttgaa ggtcatccag tatttgactt
    21241 tatgcttgta gcgttcgaat accacttccg cgaaacggac aaagaaatca acgactttac
    21301 ggttggtcca gctaccgtat tgctgcacca gatgcagcgg tatttcaaag tgggagaggg
    21361 ttatcaccgg ttcgatgttg tatttcagca gttcatcgaa cagagagtcg taaaacttca
    21421 gcccttcttc gtttggctga gcttcatcac cttttggaaa aatacgcgtc caggcgatgg
    21481 aagtccgaaa acatttgaag cccatttcgg caaatagctt gatgtcttcc ttgtagtgac
    21541 cataaaaatc aacggcttca tggtttggat agtattttcc tggcaagact tctttggtga
    21601 tttcgcgcgg cacgccgtgt gcgccaccgg tcagaacgtc acaaatgctc ggtcctttgc
    21661 cgcctttgtt ccagccgcct tcgacctgat gagcggcaac ggcgccaccc cataagaaat
    21721 ctttcggtaa ggtgagtttt ttcactatca taggctccag atgagtcaat tcttacagga
    21781 aatagtacca tgcagccaaa cgacatcact ttttttcaac gtttccagga tgacattatg
    21841 gctgggcgta aaaccatcac catccgcgac gagtctgaat cgcacttcaa aacgggtgat
    21901 gtgcttcgtg tcggacgttt tgaagatgac ggttattttt gcacgattga agtcaccgca
    21961 acctcaaccg taacgctgga tacgctgacg gaaaaacatg cagagcagga aaatatgacc
    22021 ctgactgaac tgataaaggt cattgccgac atctatcccg gtcagacaca gttttatgtg
    22081 attgaattta aatgtcttta aattgaactc acgcctgtta gttgaaattt ctcatttaat
    22141 ttcatgattt ttaggagatt agtctcaaat cagaatttat tttagctaac aggtgttcac
    22201 tggaactatt ctcagttacg ctggagaggt atacatgtgc gtgtacgttt ctccggagta
    22261 agttatggtt cagaagcccc tcattaagca gggatattcg ctggcagagg aaattgccaa
    22321 cagcgtcagt cacggcattg ggttggtgtt tggtatcgtt gggctggtgt tgctactggt
    22381 tcaggcggtg gatctcaatg ccagcgccac agcgataacc agctacagcc tctatggcgg
    22441 cagtatgatc ctgctgttcc tcgcttcgac gctctatcac gccattcctc atcaacgggc
    22501 aaaaatgtgg ctgaagaaat ttgaccattg cgctatttac ctgttgattg ccggaaccta
    22561 cacgccgttt ttgctggtgg ggctggattc tccgttagcg cgcgggttga tgattgttat
    22621 ctggagcctg gcattgctgg ggattctgtt taaactgacc atcgcgcacc gattcaaaat
    22681 tttatctctg gtgacctatc tggcgatggg ctggctgtcg ctggtggtaa tttatgaaat
    22741 ggcagttaag ctcgcggcgg gcagcgttac cttactggcg gtaggcggcg tggtttattc
    22801 gctcggagtg attttctatg tctgcaaacg cattccctac aatcatgcca tctggcacgg
    22861 cttcgtgctc ggcggcagtg tgtgccactt tctggcgatc tatttgtata ttgggcaggc
    22921 gtaataggta tgcctttgta ggcctgataa gacgcgccag cgtcgcatca ggcatcggag
    22981 cgcaaccgcc ggatgcggcg tgaacgcctt atccgatcta cgggcctcgt ccctgttgtg
    23041 ataaaggcat caaatcccag acatgataag acgcgtcagc gtcgcatcag gcgataaatg
    23101 cctgatgcga tacagagatt tactcttcga gtgaatacgg cagcggctcg atatgcagtg
    23161 tattcgcatc gtcgcgtacg cggaagatgc tgtccggttc catatcgtta ttcatgacga
    23221 cctgtaccac gacctgacca tcttccagtt ttaccgcagc cagcaccgta ccggtacgac
    23281 gccagttctc gcccattttc agctctaagt cttcaccagc ttccggcagt cggctggcgc
    23341 tacctgccag caaccagagc gcacgtttat tggcaccacg gaattttgct cgcgccacca
    23401 tctcttgtcc ggtataacag cctttcttaa aactgatacc gcccagcgcc tggagattgg
    23461 tcgcctgtgg gataaactgc ccgctgttcg cggcatcaat caccgggaaa cccgcttcaa
    23521 tgtttaatgc cagccactgt tggctattgt tcagttccgc ttcaccgcgc agtttatcgg
    23581 tcagcatatt ggcagtagct tcatcggtta cgatcaggaa acgttctgcc gggtgttcaa
    23641 accatagcaa agtggtcgcg ccttctttaa ctacctgttt ttctctcgaa ggtagttcac
    23701 taaagagatt ggcgagcgcg gcgcgcgcct gaaaaccggc aacaccaagc agcacacgct
    23761 cgtcgtctgg cgcgatggtc actttagaga acaccgcata ttttttcagt tcagtcagct
    23821 gcggttcacg cacgctgcgc cgttcaatcc acgcaaagcc atcgccgtcg cggaacagac
    23881 gtaaattgct ccacatttta cctttggcgt cgcaatgggc ggcgagcagg tgctgatttt
    23941 ctgtcatctg gctgacatct gctgtcacct gaccctgcat atatttttcg ctgtccgcgc
    24001 cagtaatggt ggcaagcgcc cagtcatcaa gcgtcatcag cgtcagcggt aaacgggcag
    24061 aagccgtagg ctgacgggga ggaaaaggtg taaaagccat aatagagtcc tgagttgctt
    24121 aacggcgtat taataactaa tggtaaaaga gctatgaggc aatgcaagtg ctttcactac
    24181 gcgatctgtg ccttctgcga ggcgacttcc aaaaaaatga agctcttgaa ttgttgtgaa
    24241 ttaatttcgc gatcgcgatg gtgtttactg atattcccgt aaaagaagtc gaaaaacacg
    24301 ttacaatagc cgggtactgg attttcgtga gacaggaaga agatggacat taacaacaaa
    24361 gcccgcattc attgggcatg ccgccgtggt atgcgcgaac tcgatatttc aatcatgccg
    24421 tttttcgaac atgagtacga cagcttaagc gatgacgaaa aacgcatctt tattcgtctg
    24481 ctggaatgtg acgatccgga cctgtttaac tggctgatga atcacggtaa accggccgat
    24541 gcagaactgg aaatgatggt ccgactcatc cagacacgga accgggaacg tggtcctgtg
    24601 gcaatctgat ttgcgcgtct cctggcgcgc acagtggctt tccttgctga ttcatgggct
    24661 ggttgccgct gttattttac tcatgccctg gccgctcagt tacaccccgt tatggatggt
    24721 gttactttcg ctggtggtat ttgattgcgt tcgcagccag cggcgtatta atgctcgcca
    24781 gggggaaatt cgattgttga tggacgggcg tttgcgttgg caagggcagg agtggagcat
    24841 cgtcaaagca ccgtggatga ttaagagcgg catgatgctg cgtttacgtt ctgatggcgg
    24901 taaacggcaa catttatggc tggcagccga cagcatggac gaagctgaat ggcgggattt
    24961 acggcggatt ttgttgcaac aagagacgca aagataaata tgacggcaaa gcatatgcgc
    25021 taagccgtca gtgagatcag gcgtaatgct ctgccatttc gttgaggatt tgctcgcacc
    25081 agctctgaat acgctcgtcg ctaaggtcat actggttagt ttcatccagc gccagaccca
    25141 cgaacagttg cccgtcagca atcaccggtt tcgggctggt aaattcatat ccttccgttg
    25201 gccagtagcc gacgaacttc acgcctttgg tcgagagttt gtcatgcagc ataccgagcg
    25261 catcgaggaa ccactcgccg tatcccagtt gatcgccaag cccatacagt gcaacaattt
    25321 taccttcaag gttcaggtcg tcgagctgat cccagacggc ttcccagtct tcctggattt
    25381 cgccaaaatc ccaggtcggg atacccagaa tgagcacatc gtactgctcc attaatttcg
    25441 gggagtcgtc cttgaggtta tgtaaggtca ccagttctgg gccgataata tcgcggattt
    25501 tttctgccgc catttcggtg taacaggtgc tggaaccgta aaaaagaccc atattcataa
    25561 cgtaagcttc tcgattctgc tgtggctttt gcggctagtg tatcagaatc gctttagtca
    25621 cggcacaata aggcataatg gatcaaatga gtgaccataa ggggcgcaag tgaaacagga
    25681 tctggcacgc atcgagcagt ttcttgatgc tctgtggctg gaaaaaaatc tggctgaaaa
    25741 tacgttgaac gcttaccgtc gcgatctgtc aatgatggtg gagtggttgc atcaccgcgg
    25801 gttgacgctg gcgacggcgc aaagtgacga tttgcaggca ttactggcag aacggctaga
    25861 gggcgggtat aaagccacca gctcagcgcg tttgctgagt gcagtgcgcc gattgttcca
    25921 gtatctttat cgcgaaaagt ttcgtgaaga cgatcccagt gcgcatctcg cttcaccgaa
    25981 attgccacag cgtttgccaa aagatttaag cgaagcgcag gtcgaacgtt tattacaggc
    26041 accattaatt gatcagccac tggagctacg cgataaagcc atgcttgaag tgttgtatgc
    26101 taccgggctg cgtgtctctg aactggtcgg gctgacaatg agtgatatca gcctacgtca
    26161 gggcgtagtg cgggtcattg gtaaaggcaa caaagagcgc ctggtgccgt taggtgaaga
    26221 ggccgtttac tggctggaaa cctatctgga acatgggcgt ccgtggctgt tgaatggtgt
    26281 gtcaattgac gtgttgtttc ccagccagcg tgcgcagcag atgacgcgac agaccttctg
    26341 gcaccgcatt aaacattatg ccgtgctggc gggtatcgac agcgaaaagc tgtcaccgca
    26401 tgtgttgcgt cacgcttttg ccactcattt attaaatcat ggtgcggatt tacgcgtggt
    26461 gcagatgcta ctgggccaca gcgatctctc caccacgcaa atttatacgc atgtcgctac
    26521 cgagcgtctg cggcaacttc atcaacagca tcacccgagg gcgtgatgtc tgaaaagaac
    26581 gggaagattt atgaagaaag gttttatgtt gtttactttg ttagcggcgt tttcaggctt
    26641 tgctcaggct gatgacgcgg caattcaaca aacgttagcc aaaatgggca ttaaaagcag
    26701 cgatattcag ccagcacccg tggctggcat gaagactgtg ctgactaaca gcggtgtgtt
    26761 gtacatcacc gatgacggta aacatatcat tcaggggcca atgtatgacg ttagtggcgc
    26821 ggctccggtc aatgtcacca ataaaatgct gctaaagcag ttgaatgcgc ttgaaaaaga
    26881 gatgatcgtt tataaagcgc cgcaggaaaa acacgtcatc accgtgttta ctgatattac
    26941 ctgtgggtac tgccacaaac tgcatgagca aatggcagac tacaacgcgc tggggatcac
    27001 cgtgcgttat cttgctttcc cgcgccaggg gctggagagc caggctgagc aacaaatgaa
    27061 agccatctgg tgtgcgaaag ataaaaacaa agcgtttgat gatgtgatgg ctggtaaagc
    27121 tgccactccg gcaagttgcg atatcgatat tgccgatcat tacgcacttg gcgtccagct
    27181 tggcgttagc ggcactccgg caattgtgct gagcaatggc acacttgttc cgggttacca
    27241 gccgccgaaa gagatgaaag aattcctcga cgaacaccaa aaaatgacca gcggtaatta
    27301 attcgcgtga aacaacagat acaacttcgt cgccgtgaag tcgatgaaac ggcagacttg
    27361 cccgctgaat tgcctccctt gctgcgccgt ttatacgcca gccggggagt acgcagtgcg
    27421 caagaactgg aacgcagtgt taaaggtatg ttgccctggc agcaactaag cggtgtcgaa
    27481 aaggccgttg agatccttta caacgctttt cgcgaaggaa cgcggattat tgtggtcggt
    27541 gatttcgacg ccgacggcgc gaccagcacg gctctaagcg tgctggcgat gcgctcgctt
    27601 ggttgcagca atatcgacta cctggtacca aaccgtttcg aagacggtta cggcttaagc
    27661 ccggaagtgg tcgatcaggc ccatgcccgt ggcgcgcagt taattgtcac ggtggataac
    27721 ggtatttcct cccatgcggg ggttgaacac gctcgctcgt tgggcattcc ggttattgtt
    27781 accgatcacc atttgccagg cgaaacatta cccgcggcgg aagcgatcat taaccctaac
    27841 ttgcgcgact gtaatttccc gtcgaaatca ctggcaggcg tgggtgtggc gttttatctg
    27901 atgctggcgc tgcgcacctt tttgcgcgat cagggctggt ttgatgagcg cggcatcgca
    27961 attcctaacc tggcagaact gctggatctg gtcgcgctgg ggacagtggc ggacgtcgtg
    28021 ccgctggacg ctaataatcg cattctgacc tggcagggga tgagtcgcat ccgtgccgga
    28081 aagtgccgtc cagggattaa agctctgctg gaagtggcaa accgtgatgc acaaaaactc
    28141 gccgccagcg atttaggttt tgcgctgggg ccacgtctca atgctgccgg gcgactggac
    28201 gatatgtccg tcggtgtggc gctgttgctg tgcgacaaca tcggcgaagc gcgcgtgctg
    28261 gcaaatgaac tcgatgcgct aaatcagacg cgaaaagaga tcgaacaagg aatgcagatt
    28321 gaagccttga ccctgtgcga gaaactggag cgaagtcgcg acacgctacc cggcgggctg
    28381 gcaatgtatc accccgaatg gcatcagggc gttgtcggta ttctggcttc gcgcatcaaa
    28441 gagcgttttc accgtccggt tatcgccttt gcgccagcag gtgatggtac gctgaaaggt
    28501 tccggtcgct ccattcaggg gctgcatatg cgtgatgcgc tggagcgatt agacacactc
    28561 taccccggta tgatgctgaa gtttggcggt catgcgatgg cggcgggttt gtcgctggaa
    28621 gaggataaat tcgaactctt tcaacaacgg tttggcgagc tggttaccga gtggctggac
    28681 ccttcgctat tgcaaggcga agtggtgtca gacggcccgt taagcccggc cgaaatgacc
    28741 atggaagtgg cgcagctgct gcgcgatgct ggcccgtggg ggcagatgtt cccggagccg
    28801 ctgtttgatg gtcatttccg tctgctgcaa cagcggctgg tgggcgaacg tcatttgaaa
    28861 gtcatggtcg aaccggtcgg cggcggtccg ctgctggatg gtattgcttt taatgtcgat
    28921 accgccctct ggccggataa cggcgtgcgc gaagtgcaac tggcttacaa gctcgatatc
    28981 aacgagtttc gcggcaaccg cagcctgcaa attatcatcg acaatatctg gccaatttag
    29041 cgtcatcttc tctataaaaa agagcgtgga ttgggtacaa tcccgctctt atcaccgcat
    29101 tttgactagc tcaataaaag aaatcagacc atgtttgaaa ttaatccggt aaataatcgc
    29161 attcaggacc tcacggaacg ctccgacgtt cttagggggt atctttgact acgacgccaa
    29221 gaaagagcgt ctggaagaag taaacgccga gctggaacag ccggatgtct ggaacgaacc
    29281 cgaacgcgca caggcgctgg gtaaagagcg ttcctccctc gaagccgttg tcgacaccct
    29341 cgaccaaatg aaacaggggc tggaagatgt ttctggtctg ctggaactgg ctgtagaagc
    29401 tgacgacgaa gaaaccttta acgaagccgt tgctgaactc gacgccctgg aagaaaaact
    29461 ggcgcagctt gagttccgcc gtatgttctc tggcgaatat gacagcgccg actgctacct
    29521 cgatattcag gcggggtctg gcggtacgga agcacaggac tgggcgagca tgcttgagcg
    29581 tatgtatttg cgctgggcag aatcgcgtgg tttcaaaact gaaatcatcg aagagtcgga
    29641 aggtgaagtg gcgggtatta aatccgtgac gatcaaaatc tccggcgatt acgcttacgg
    29701 ctggctgcgt acagaaactg gcgttcaccg cctggtgcgt aagagcccgt ttgactccgg
    29761 cggtcgtcgc cacacgtcgt tcagctccgc gtttgtttat ccggaagttg atgatgatat
    29821 tgatatcgaa atcaacccgg cggatctgcg cattgacgtt tatcgcgcgt ccggcgcggg
    29881 cggtcagcac gttaaccgta ccgaatctgc ggtgcgtatt acccacatcc cgaccgggat
    29941 cgtgacccag tgccagaacg accgttccca gcacaagaat aaagaccagg ccatgaagca
    30001 gatgaaagcg aagctttatg aactggagat gcagaagaaa aatgctgaga aacaggcgat
    30061 ggaagataac aaatccgaca tcggctgggg cagccagatt cgttcttatg tccttgatga
    30121 ctcccgcatt aaagatctgc gcaccggggt tgaaacccgc aatacgcagg ccgtgctgga
    30181 cggcagcctg gatcaattta tcgaagcaag tttgaaagca gggttatgag gaaccaacat
    30241 gtctgaacaa cacgcacagg gcgctgacgc ggtagtcgat cttaacaatg aactgaaaac
    30301 gcgtcgtgag aagctggcga acctgcgtga gcagggaatt gccttcccga acgatttccg
    30361 tcgcgatcat acctctgacc aattgcacgc agaattcgac ggtaaagaga acgaagaact
    30421 ggaagcgctg aacatcgaag tcgccgttgc tggccgcatg atgacccgcc gtattatggg
    30481 taaagcctct tttgttaccc tgcaggacgt tggcggtcgt attcagctgt acgttgcccg
    30541 tgacgatctt ccggaaggcg tttacaacga gcagttcaaa aaatgggatc tcggcgacat
    30601 cctcggcgcg aaaggtaaac tgttcaaaac caaaaccggc gaactgtcta tccactgcac
    30661 cgagctgcgt ctgctgacca aagcactgcg tccgctgccg gacaaattcc acggcttgca
    30721 ggatcaggaa gcgcgctatc gtcagcgtta tctggatctc atctctaacg atgaatcccg
    30781 caacaccttt aaagtgcgtt cgcagatcct ctctggcatt cgccagttca tggtaaatcg
    30841 cggctttatg gaagttgaaa cgccgatgat gcaggtgatc ccaggcggtg ccgctgcgcg
    30901 tccgtttatc acccatcata acgcgctgga tcttgacatg tacctgcgta tcgcgccgga
    30961 actgtacctc aagcgtctgg tggtcggtgg cttcgagcgt gtattcgaaa tcaaccgtaa
    31021 cttccgtaac gaaggtattt ccgtacgtca taacccagag ttcaccatga tggaactcta
    31081 tatggcttac gcagattaca aagatctgat cgagctgacc gaatcgctgt tccgtactct
    31141 ggcacaggat attctcggta agacggaagt cacctacggc gacgtgacgc tggacttcgg
    31201 taaaccgttc gaaaaactga ccatgcgtga agcgatcaag aaatatcgcc cggaaaccga
    31261 catggcggat ctggacaact tcgactctgc aaaagcgatt gctgaatcta tcggcatcca
    31321 cgttgagaag agctggggtc tgggccgtat cgttaccgag atcttcgaag aagtggcaga
    31381 agcacatctg attcagccga ccttcattac tgaatatccg gcagaagttt ctccgctggc
    31441 gcgtcgtaac gacattaacc cggaaatcac agaccgcttt gagttcttca tcggtggtcg
    31501 tgaaatcggt aacggcttta gcgagctgaa tgacgcggaa gatcaggcgc agcgcttcct
    31561 ggatcaggtt gccgcgaaag acgcaggtga cgacgaagcg atgttctacg acgaagatta
    31621 cgtcaccgca ctggaacacg gcttaccgcc gacagcaggt ctgggaattg gtatcgaccg
    31681 tatggtaatg ctgttcacca acagccatac catccgcgac gttattctgt tcccggcgat
    31741 gcgtccagta aaataagcat tacgttatgc taataacccc ggcaaatgtc ggggtttttt
    31801 aattgtgctg cgcgaaagca gacaacaatt ttcttgcttc actattggct gcctgcatta
    31861 ccatccacgg actgaacgcc cacggcgtgg catcaatacc gtgtaataca tctgctaaat
    31921 cacaccattg ataatccatc acttcatcat cgttgatctg taacgcactg ttggtgcgtg
    31981 cggcaaatac cggacacact tcattttcca caatgccatt cggatcggtg gcgcgatagc
    32041 gaaagtcagg atagatagat tcaggaggcg taatttccac gccaagctca taacggcaac
    32101 ggcggatcac tgcgtcttcg ttgcattctc ccagttgtgg gtgcccacaa accgagttag
    32161 tccacacgcc aggccatgct tttttgctca gtgcgcggcg ggtaactaat aattgcccct
    32221 tggcattaaa cagccaactg gagaacgcga gatgtaagag ggtgtctgcc gtgtgtgcgg
    32281 catacttttc cagcgtaccc gtgggaactc cctgtgcatt caataaaatg acgtgttccg
    32341 tttgcataat ttctcacatg taattctgat cactcatcat tatagataat tgaagagtga
    32401 aatgattaac caagtgagcg tttatcgaca accgcccgtt ttgagcggat gccgacaggt
    32461 aaaaaccatt taaaaaagta gcatcatata tttgaagcga ctttcaatgg ccattgcaac
    32521 acagtcagaa atgacaggaa tagagagagt aaaaagcaac agcagactga atatagcgcg
    32581 cattaaaaga tttatattat tctccatgct catttttctt cagctt
//
LOCUS       DAJVUN010000027        32432 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.027, whole genome shotgun sequence.
ACCESSION   DAJVUN010000027 DAJVUN010000000
VERSION     DAJVUN010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32432
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.027"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            197..991
                     /gene="panB"
                     /locus_tag="OQQ76_001013"
     CDS             197..991
                     /gene="panB"
                     /locus_tag="OQQ76_001013"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000805487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HCS1967596.1"
                     /translation="MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGLNVMLVG
                     DSLGMTVQGHDSTLPVTVADIAYHTASVRRGAPNCLLLADLPFMAYATPEQAFENAAT
                     VMRAGANMVKIEGGEWLVETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG
                     DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA
                     FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH"
     gene            1003..1854
                     /gene="panC"
                     /locus_tag="OQQ76_001014"
     CDS             1003..1854
                     /gene="panC"
                     /locus_tag="OQQ76_001014"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HCS1967597.1"
                     /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEA
                     KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG
                     TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIR
                     KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG
                     ERDLDEIIAIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID
                     NKIVELA"
     gene            complement(2146..3042)
                     /gene="rpnC"
                     /locus_tag="OQQ76_001015"
     CDS             complement(2146..3042)
                     /gene="rpnC"
                     /locus_tag="OQQ76_001015"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnC"
                     /protein_id="HCS1967598.1"
                     /translation="MDAPSTTQHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL
                     HLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAM
                     HRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDIFYSPELARRVYNSPFPLVDITI
                     TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR
                     GHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEERQEFAQRFLSKG
                     MSREDVAEMTNLSLAEIDRLIN"
     gene            3316..3696
                     /gene="panD"
                     /locus_tag="OQQ76_001016"
     CDS             3316..3696
                     /gene="panD"
                     /locus_tag="OQQ76_001016"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HCS1967599.1"
                     /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI
                     DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR
                     PNVAYFEGDNEMKRTAKAIPVQVA"
     gene            complement(3700..4886)
                     /locus_tag="OQQ76_001017"
                     /pseudo
     CDS             complement(3700..4886)
                     /locus_tag="OQQ76_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001727225.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
     gene            complement(4981..5421)
                     /locus_tag="OQQ76_001018"
     CDS             complement(4981..5421)
                     /locus_tag="OQQ76_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HCS1967600.1"
                     /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML
                     SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA
                     CRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY"
     gene            complement(5526..6296)
                     /locus_tag="OQQ76_001019"
     CDS             complement(5526..6296)
                     /locus_tag="OQQ76_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001747261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1967601.1"
                     /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
                     LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT
                     HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN
                     GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
                     LGINDVPLATTFGVLVVFIVVFYLICWSLIQRGRGLRS"
     gene            complement(6293..7219)
                     /locus_tag="OQQ76_001020"
     CDS             complement(6293..7219)
                     /locus_tag="OQQ76_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1967602.1"
                     /translation="MTIALELQQLKKTYLGGVQALRGIDLQVEAGDFYALLGPNGAGK
                     STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
                     SMKALLAKLKSETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS
                     EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA"
     gene            7328..7990
                     /gene="can"
                     /locus_tag="OQQ76_001021"
     CDS             7328..7990
                     /gene="can"
                     /locus_tag="OQQ76_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HCS1967603.1"
                     /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPHFLWIGCSD
                     SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG
                     GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH
                     STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN
                     HK"
     gene            complement(8031..8567)
                     /gene="hpt"
                     /locus_tag="OQQ76_001022"
     CDS             complement(8031..8567)
                     /gene="hpt"
                     /locus_tag="OQQ76_001022"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004204384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HCS1967604.1"
                     /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRG
                     SFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
                     DSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDY
                     AQRYRHLPYIGKVILLDE"
     gene            8773..11061
                     /gene="gcd"
                     /locus_tag="OQQ76_001023"
     CDS             8773..11061
                     /gene="gcd"
                     /locus_tag="OQQ76_001023"
                     /EC_number="1.1.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinoprotein glucose dehydrogenase"
                     /protein_id="HCS1967605.1"
                     /translation="MAINNTGSRRLLVTLTVLFAALCGLYLLIGGGWLVAIGGSWYYP
                     IAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGI
                     WLILPFVWRRLVIPASGAVAALVVALLISGSILTWAGFNDPQEINGTLSADATPAEAI
                     SPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEV
                     TPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPKLKTNESFQHVTCRGVSYHEAKAE
                     TASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYE
                     PTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSD
                     EHTFTFNSPNSWAPAAYDATLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
                     GKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV
                     VPAPEKPVPQGAAKGDYVTPTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQM
                     RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGN
                     PMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV
                     VWKKRIGTPQDSMPMLGGPISTAGNVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQ
                     ATPMTYEVNGKQYVVISAGGHG"
     gene            complement(11168..12718)
                     /gene="cueO"
                     /locus_tag="OQQ76_001024"
     CDS             complement(11168..12718)
                     /gene="cueO"
                     /locus_tag="OQQ76_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HCS1967606.1"
                     /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA
                     RNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHW
                     HGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV
                     VIEDDEILKLMLPKQWGIDDVPVIVQDKKFNADGQIDYQLDVMTAAVGWFGDTLLTNG
                     AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL
                     MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL
                     SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN
                     MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT
                     QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDT
                     GMMLGFTV"
     gene            12884..13231
                     /locus_tag="OQQ76_001025"
     CDS             12884..13231
                     /locus_tag="OQQ76_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacC family pilotin-like protein"
                     /protein_id="HCS1967607.1"
                     /translation="MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKND
                     CGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKA
                     LARDSLSLLAYVK"
     gene            13337..14203
                     /gene="speE"
                     /locus_tag="OQQ76_001026"
     CDS             13337..14203
                     /gene="speE"
                     /locus_tag="OQQ76_001026"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HCS1967608.1"
                     /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
                     RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
                     SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT
                     DPIGPGESLFTSAFYEGCKRCLNPSGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF
                     YQTAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP
                     QYLQDALASQPS"
     gene            14219..15013
                     /gene="speD"
                     /locus_tag="OQQ76_001027"
     CDS             14219..15013
                     /gene="speD"
                     /locus_tag="OQQ76_001027"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HCS1967609.1"
                     /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
                     ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP
                     ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
                     VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML
                     LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV"
     gene            complement(15050..15412)
                     /locus_tag="OQQ76_001028"
     CDS             complement(15050..15412)
                     /locus_tag="OQQ76_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414661.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HCS1967610.1"
                     /translation="MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ
                     AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCG
                     VEDFLQVVAAYRNFVQQK"
     gene            complement(15587..18184)
                     /gene="acnB"
                     /locus_tag="OQQ76_001029"
     CDS             complement(15587..18184)
                     /gene="acnB"
                     /locus_tag="OQQ76_001029"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HCS1967611.1"
                     /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF
                     LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL
                     IDALDDAKLAPIAAKALSHTLLIFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP
                     ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG
                     PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG
                     KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV
                     LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA
                     CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
                     PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
                     PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
                     KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNI
                     VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPIL
                     CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP
                     TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
                     TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA
                     DGVIFQTAV"
     gene            18539..20392
                     /locus_tag="OQQ76_001030"
     CDS             18539..20392
                     /locus_tag="OQQ76_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HCS1967612.1"
                     /translation="MKMTLPFKPHVLALICSAGLCAASAGLYIKSRTVEAAVETQSTQ
                     LAVSDAAAVTLPATVSAPPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTY
                     PANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNL
                     GDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSNEQKVITTTKKAVPVKQTVTAPVIPSN
                     TVLTASPVITEPATTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEP
                     FIDSFVRGFGYSMGVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHN
                     GDNINIDVNNFNRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSA
                     TQLPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSYDDFRDFS
                     RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPQIQQRREAARERIQPASPEQRQ
                     AVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSA
                     SPEQRQVFRERVQESRPQRLNDSNRTARLNNDQRSAVRERLSERGARRLER"
     gene            complement(20463..21887)
                     /gene="lpdA"
                     /locus_tag="OQQ76_001031"
     CDS             complement(20463..21887)
                     /gene="lpdA"
                     /locus_tag="OQQ76_001031"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HCS1967613.1"
                     /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV
                     CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA
                     GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP
                     RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI
                     VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN
                     GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC
                     ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNPKAKKK"
     gene            complement(22212..24104)
                     /gene="aceF"
                     /locus_tag="OQQ76_001032"
     CDS             complement(22212..24104)
                     /gene="aceF"
                     /locus_tag="OQQ76_001032"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HCS1967614.1"
                     /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM
                     EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA
                     AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI
                     KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDE
                     VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM
                     IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIR
                     RLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKV
                     DFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAK
                     RKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV
                     PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVN
                     APEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSD
                     IRRLVM"
     gene            complement(24119..26782)
                     /gene="aceE"
                     /locus_tag="OQQ76_001033"
     CDS             complement(24119..26782)
                     /gene="aceE"
                     /locus_tag="OQQ76_001033"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008814576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HCS1967615.1"
                     /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA
                     RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
                     ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ
                     EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
                     DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII
                     NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
                     REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHSI
                     KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT
                     YLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLK
                     NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
                     QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL
                     IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
                     QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR
                     EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
                     VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
                     LAKRGEIDKKVVADAIAKFNIDADKVNPRLA"
     gene            complement(26943..27707)
                     /gene="pdhR"
                     /locus_tag="OQQ76_001034"
     CDS             complement(26943..27707)
                     /gene="pdhR"
                     /locus_tag="OQQ76_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex transcriptional
                     repressor PdhR"
                     /protein_id="HCS1967616.1"
                     /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
                     DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE
                     TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA
                     AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAR
                     EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN"
     gene            28248..29621
                     /gene="aroP"
                     /locus_tag="OQQ76_001035"
     CDS             28248..29621
                     /gene="aroP"
                     /locus_tag="OQQ76_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter AroP"
                     /protein_id="HCS1967617.1"
                     /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA
                     GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL
                     YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK
                     VIAVVAMIIFGGWLLFSGNSGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE
                     LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF
                     HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV
                     NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG
                     VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT
                     AKAVKAH"
     gene            complement(29664..30518)
                     /gene="ampE"
                     /locus_tag="OQQ76_001036"
     CDS             complement(29664..30518)
                     /gene="ampE"
                     /locus_tag="OQQ76_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase regulator AmpE"
                     /protein_id="HCS1967618.1"
                     /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL
                     GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND
                     SHARVTMAGELTMINGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGIWGPV
                     TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL
                     PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL
                     LTIYGALV"
     gene            complement(30515..31066)
                     /gene="ampD"
                     /locus_tag="OQQ76_001037"
     CDS             complement(30515..31066)
                     /gene="ampD"
                     /locus_tag="OQQ76_001037"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HCS1967619.1"
                     /translation="MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFG
                     GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY
                     QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPD
                     RKTDPGPAFDWARFRALVSKETT"
     gene            31154..32047
                     /gene="nadC"
                     /locus_tag="OQQ76_001038"
     CDS             31154..32047
                     /gene="nadC"
                     /locus_tag="OQQ76_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HCS1967620.1"
                     /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND
                     ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ
                     PLFELEGPSRVLLTGERTALNFVQTLSGAASKVRHYVELLEGTNTQLLDTRKTLPGLR
                     SALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN
                     LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD
                     FISVGALTKHVQALDLSMRFR"
     gene            32250..>32432
                     /locus_tag="OQQ76_001039"
     CDS             32250..>32432
                     /locus_tag="OQQ76_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HCS1967621.1"
                     /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
                     TFVPYRTAVELCALEHG"
BASE COUNT         7827 a         8814 c         7986 g         7805 t
ORIGIN      
        1 gccacgctac aacaggatgg aactatacca atagaagctg gtgagtttaa agccaccagt
       61 actttccagg taacctaccc ttaataagtc caccgcaccg ccatcatctg gcggtgcggt
      121 aattgataaa tcattgcccc caccaatgtg actgataaaa tgccaggcaa cacgacatca
      181 tttatcagga cacgttatga aaccgaccac cattgcttca cttcagaaat gtaagcagga
      241 taaaaagcgt ttcgcgacca tcaccgctta cgactacagc ttcgcgaaac tatttgctga
      301 tgaaggactt aacgtcatgc tggtaggcga ctcgctgggc atgacggttc agggtcacga
      361 ctccaccctg ccggtgaccg ttgccgatat cgcctaccac actgcctccg tacgtcgtgg
      421 tgcgccaaac tgcctgctgt tggctgacct gccgtttatg gcgtatgcca cgccggaaca
      481 agcctttgaa aacgccgcaa cggttatgcg tgccggtgcc aatatggtca aaattgaggg
      541 cggtgagtgg ctggtcgaaa ccgtaaaaat gctgaccgaa cgtgccgttc ctgtatgtgg
      601 tcacttaggt ttaaccccac agtcagtgaa tattttcggt ggctacaaag ttcaggggcg
      661 cggcgatgaa gcgggcgatc aactgctcag cgatgcatta gccttagaag ccgctggggc
      721 acagctgctg gtgctggaat gcgtgccggt tgaactggca aaacgtatta ccgaagcact
      781 ggcgatcccg gttattggca ttggcgcagg caacgtcact gacgggcaga tcctcgtgat
      841 gcacgacgcc ttcggcatta ccggcggtca cattcctaaa ttcgctaaaa atttcctcgc
      901 cgaaacgggc gacatccgcg cggctgtgcg gcagtatatg gctgaagtgg agtccggcgt
      961 ttatccgggc gaagaacaca gtttccatta aggagtcacg ttgtgttaat tatcgaaacc
     1021 ctgccgctgc tgcgtcagca aattcgccgc ctgcgtatgg aaggcaagcg cgtggcgctg
     1081 gtgcctacta tgggtaatct gcacgatggc catatgaagc tggtcgacga agccaaagcc
     1141 cgcgccgatg tggtcgtcgt cagtattttc gttaacccga tgcagttcga ccgcccggaa
     1201 gatctggcac gttatccacg gaccttgcag gaggactgcg agaagctaaa caaacgtaaa
     1261 gtggatttag ttttcgcccc ttcggtaaaa gagatctacc cgaacggtac tgaaacccat
     1321 acttacgttg acgttcccgg gctttcgacc atgctggaag gcgcgagccg tccggggcat
     1381 tttcgcggcg tttcgactat cgtcagcaag ctgtttaacc tggtccagcc ggacatcgcc
     1441 tgcttcggtg aaaaggactt tcagcaactg gcgctaatcc gcaaaatggt tgccgatatg
     1501 ggcttcgata ttgaaattgt cggcgtcccg attatgcgcg ccaaagatgg ccttgcgctc
     1561 agttcccgta atggttatct gacggcggaa caacgcaaaa ttgcgcccgg tctgtacaaa
     1621 gttttaagtt caattgccga caaattgcag gctggcgagc gggatcttga tgaaattatt
     1681 gccattgcag ggcaagaact gaatgaaaaa ggcttccgcg ccgatgatat tcagattcgc
     1741 gatgccgaca cgttgctgga agtctctgaa accagcaaac gagctgtaat tctggtagcc
     1801 gcctggcttg gcgatgcccg cctgatcgac aacaaaatcg tcgaactggc gtaatgcttt
     1861 tactctaaat aattcaagtt gcaggaaggc ggcaagcgag tgacaaattc gtcaggaacg
     1921 aatttgccca gccgcaggct ggccttcggt gagagacatg gatgtctctc attaatcccc
     1981 aggagcttac ataagtaagt gactggggtt agcgaacgca gacacagcac atgcaattta
     2041 aagtatgacg agtataactg gcgctacggc tgatggcgcc aattattaat ttgccccacg
     2101 tcatggcgat ggcgtctgta agcaattatt cataacgcag acaacttagt taatcagcct
     2161 atcaatctca gcaagagata aatttgtcat ctctgcaacg tcttcccgag acatcccttt
     2221 actcagaaaa cgctgggcga attcttgcct ttcctcctgt cttccctgct gaatcccctt
     2281 ctcaatccct ttctcttcaa accactgcgc cagcgtcatc atagactccc ctcccgtttc
     2341 cctgtctctc agcacaccat aaaacaaatc cgcttgttca gtatgaccgc gttgcagcat
     2401 atagttttgc atggcaacta actgacttcc gctagtgtac ccttcgtcaa tcagcgtgac
     2461 cagttgctcc agcaataaca ttaagtcgcg ctggcgaata tgtttttgca gtagttcgag
     2521 aatcgcaatc cgccgatgtt gcatgatttc gtcatccggt gtgatggtga tatccaccag
     2581 cgggaaagga ctgttataga cgcgtcgtgc cagctccggc gagtaaaata tatcaaacca
     2641 gcacattgag agcggataag gtgtggcctc gccctgataa aacagtatcg gcaccaccag
     2701 cggcagctta tcgtgatccg cctccagatg ccggtgcatg gcagcaatag aataacgcat
     2761 catgcgaaag gccattttct tatccggctt gctttggtgt tcaatcacaa catgcagata
     2821 accgggattg ccctgcattt gcacggaata gagcacgtcc gtgctgtgtc ctttcaggct
     2881 ctcttcaatg aaactccccg actctaaatg aagcgtgttg aggtcacaaa gttctcgtaa
     2941 ttccactggc aaatgtatct ccagaaagtc gcgagccgtc tccgcgtgca ttaaaaattg
     3001 tttaaacact gcatcatgct gtgtggtact cggtgcatcc atcttccctg ccttccgtgt
     3061 tgtcttgcgt gaaggcagta tccagtcaag gcgtgccatc gtcagccacc tctttagtat
     3121 ttaccgagca gcgttcagag aaatttcaat tggttacagc cgttacatgg cacgcttcgg
     3181 cacggtacgc aaactgctga tgtaaatgcc gtcagatgag tagacactaa acaaaaatcg
     3241 ggcaatactg cgtgagaatt tcctcaaagc aggcatcgcc tgcttcgtta acgacagggt
     3301 agaaaggtag aagttatgat tcgcacgatg ctgcagggca aactccaccg cgtgaaagtg
     3361 actcatgcgg acctgcacta tgaaggttct tgcgccattg accaggattt tcttgacgca
     3421 gccggtattc tcgaaaacga agccattgat atctggaatg tcaccaacgg caagcgtttc
     3481 tccacttatg ccatcgcggc agaacgcggt tcgagaatta tttctgttaa cggtgcggcg
     3541 gcccactgcg ccagtgtcgg cgatattgtc atcatcgcca gcttcgttac catgccagat
     3601 gaagaagctc gcacctggcg acccaacgtc gcctattttg aaggcgacaa tgaaatgaaa
     3661 cgtaccgcga aagcgattcc ggtacaggtt gcttgattgt tatccctgcg gctggttact
     3721 caccagccgc gacatcgtct ccagcgaatc cgttcttaag atataaagtc gttttagtaa
     3781 caacggatta tcccccggtt ttactttgcc tttcatggtt gtcaccgcca ggtgaaatcc
     3841 ggcatcgttt gctgccttca cggctttgtc attaaatccg ccaaacggat acgaaagata
     3901 ccagacatgc ggattaaatt gcgccagagc gcggcgtgaa cgtgcaaaat caaacagaat
     3961 attgtgttca ctacggctca gtaatatggg gcggcgataa ccatccaccc gatgcaaaaa
     4021 atgggtatgt aactggaaat caaaaacatc gcgaatttcg ttaagttcag aaacgctcat
     4081 aaattgcagc gattttgggt cccacttctg cgggtgacgt ttgatgcgcg aggtaacaat
     4141 aaacgccgtc gccttcatgc catattgttt caacacggga tacgcatagc ggctcaccga
     4201 tttgaggcca tcatcaaagg taatcaccac cgctcgcgca gggagattga tcttattctt
     4261 cacgtaacct tccagctgca ccatgctcag tgtcgcgtat cccctgtcgc gcagccaggc
     4321 catctggtta ttgaaagcgc gtactgaggt ggtcgtcgaa gtatggcgaa aacgggtgtt
     4381 ttcttcatcg cgcagaatat ggtgataggt tagcaccggc aggccattat cgggttgggc
     4441 atccagcgcg ctgatatagg ccagtcgatc gccaatacgg atctgatacc aggtttgatt
     4501 taacctgtct ttcagtttat gcaaaatcgg gtagcgcaaa ttgtccgcca gtaccccaaa
     4561 gcactcggcg cgttatagac cggcgtatct ttccaggtaa ttaagttctg attactcagc
     4621 ggcttgttga ggtcacccaa accgtcttca actttttgtc gcccctgaac tggctcgaga
     4681 tgccctttat cgataaaccc tttaccaaag ccaaaattaa atgcgtaata acttgcggca
     4741 gtgggctcca cggcaatgat ttgcccggcc cgaatattcc ccacggtcac catcttgtcg
     4801 ccaatttgcg cccagatcgc agcattttcg atggtttgca tataacgggc aggtaacgcg
     4861 gcactaacgc ttgcggtaaa cagcatcagc aggatgaata acagcttgtt tatacatgaa
     4921 aaaataaccg agggtgaaac aacgcttgta ttgtagcaaa agcgccatca gaatcgcggg
     4981 ttaatactca tacaaattat gtttgaggac aaaaggcgga tttttttgtt gttggtgcca
     5041 aagactactc acctccggcg cacccagttc gacaatacgc tcgcgaaact ctgaactggt
     5101 catggtttca cggcaagcca tcatctgttc aattaacggt aacgtgacac cagaaatcac
     5161 ttcacaacgg gagtgtttat ggcttaataa tgaagccacg cggtacggtg gcgctccggc
     5221 tatatcggtt aagaagatga caccctcacc agagtccgct tcatgcagag catcgcacat
     5281 catgcggctg agcatattag agcttaatcc gcgccagaaa ttcacggccc ggcactgaag
     5341 aagtgcccca tgttttttct ccagcgcatc cagtatctct tgcgcccggt catcgtgaca
     5401 ggtaattacc caacctaaca tcgccttcct ccttagccga aaatcagtct atcctgacca
     5461 ttgttgataa agggtgatag ccgtcaaaac tcctctcccc cgaatccaga ggagaggaaa
     5521 tagccttagc tacgcaaacc acgtccacgt tggatcagcg accaacagat caaataaaac
     5581 accacaataa agaccaccag tacgccaaag gtagtggcca gcggcacatc atttataccg
     5641 aggaagccgt agcggaaacc actgatcata taaacgattg ggttcaggtg cgacagccct
     5701 tgccagaacg gcggcaacaa agtcagggag taaaacaccc cgcccaaata cgtgagtggc
     5761 gttaacacaa aggttggcac caggctgatg tcatcgaacg ttttggcaaa cacgccgttc
     5821 agcaaacccg caagggagaa tagcaccgcc gtgagcacca gggttaaggc aacgaatacc
     5881 cacgaatgca cctgaaacgg cacaaaaaac agtgaaattg ccgtcaccag aatgccaaca
     5941 aacagaccac gcgccacgcc accgccgaca tatccggcaa taatgacgtg agtcggaacc
     6001 ggcgctacca gcagctcttc aatattacgc tggaacttgg caccaaaaaa tgatgacgcg
     6061 acgttagcgt aggcattggt gatcaccgac atcatgatca gccccggtac gatgaactgc
     6121 atatagctga agccatgcat atcgccaata cgcgaaccta tcaggttacc gaagataata
     6181 aagtaaaggg tcatggtgat gactggcggc accagcgtct gcacccagat acgcataaag
     6241 cgatggatct ctttcgccca gatgcttttt agcgccaccc agtaaagatg catcatgcgc
     6301 gatctccttg tttttcatta accagtgaaa caaacagctc ttccagacgg ttagctttgt
     6361 tacgcatact taatacctga atgccctgct cacttaactg cgtaaatacg ctgttgatcc
     6421 cctgctcacg cagcacttca acttccagcg tcgcggtatc gaccagtcga tactgatagc
     6481 catcgagctt cggtaacggg cttttcggtg cgagatcgag aataaaggtt tccgatttca
     6541 gcttcgccag cagcgccttc atcgaggtat tttccaccag ctcaccgtgt tgaataatgc
     6601 cgatattgcg gcacagcatt tctgcttctt ccaggtagtg tgtagtgaga atgatggtgg
     6661 tgcctttgtc gtttaaatcc ttcaaaaagc cccacattga gcggcgaagt tcaatatcca
     6721 cgcctgcggt cggttcgtcg agaatcagta gtttaggttc atgcattaac gcacgggcaa
     6781 tcattaaacg gcgcttcatc ccgccagata acatacgcgc acgttcgttg cgttttcccc
     6841 ataaatcgag ttgtttgaga tatttttcgc tgcggatgta cgcttctttg cgctccacgc
     6901 cgtagtaccc tgcctgattc accacaattt gctgcacggt ttcaaacggg ttgaagttaa
     6961 attcctgcgg caccagtccc aactgacgtt tagcgttcac gacatccttc tcgagatcgt
     7021 aaccaaatac gctgacccgc ccggaggttt tatttaccag agagctgata ataccgatag
     7081 tggtcgattt cccggccccg ttcggcccga gaagcgcata aaaatcaccc gcttcgacct
     7141 gcaaatctat tccacgaagc gcctgaacgc cgcctagata ggttttttta agctgttgaa
     7201 gttccagtgc aatggtcata aatttttact taccttacgt tcttacactt tatctgtggt
     7261 ttaaatcgtc ccggagttgc cctatattag ccaaacgtaa ttatttggtt acaggtcgtt
     7321 aacctccatg aaagacatag atacactcat cagcaacaat gcactatggt caaaaatgct
     7381 ggtggaagag gatcccgggt tttttgagaa actggcacaa gcgcaaaaac cgcactttct
     7441 atggattgga tgttccgaca gtcgcgttcc tgcagaacgt ttaaccggtc ttgagccggg
     7501 cgaactcttt gttcaccgta atgttgctaa cctggtcatt cacaccgacc tgaactgcct
     7561 ttccgtggtt cagtatgcag tggatgtact agaagttgaa cacattatta tctgtggcca
     7621 ctacggttgc ggcggcgtac aagccgcagt tgaaaacccg gaactggggc ttatcaacaa
     7681 ctggctgctg catatccgcg atatctggtt caaacatagc tcattgctcg gcgaaatgcc
     7741 gcaagagcgc cgtctggata ccttgtgtga actgaacgtc atggaacagg tgtataacct
     7801 aggccactcc accattatgc aatcagcgtg gaaacgcggg cagaaagtta ccattcacgg
     7861 ctgggcctat ggcattcacg acggcttgct gcgtgatctg gatgttactg ccaccaaccg
     7921 cgaaaccctt gagcaacgtt accgtcacgg gatttccaac ctcaagctga aacacgccaa
     7981 ccacaaataa aaatgccatg ccggatgcaa cacatccggc aacttcacac ttactcgtcc
     8041 agcagaatca ctttgccgat atacggcaga tgacggtaac gctgtgcgta atcaatgccg
     8101 taacccacca caaactcatc cgggatcgag aaaccgataa attctaccgg gacgttcact
     8161 tcacgacggg acggtttatc cagcagcgta caaatcgcca gcgacttcgg ttcgcgcagg
     8221 cttaagatct cacgcacttt cgacagtgta ttccccgagt cgatgatatc ttcaacaatc
     8281 agcacgtcct tgccacggat atcttcatcc agatctttga ggattttcac atcacgggtg
     8341 gtggacatgc cgctaccgta gctggaggcg gtcataaagt cgacttcatg agatacctga
     8401 acttcacggc acaggtccgc cataaacata aatgagccac gcagcagacc caccagcacc
     8461 atatcgctgc cgctgtcttt gtaacgctca gtaatctgac gacccagttc ggcgatacgc
     8521 gctttaatct ccgcttcggg gatcattact tctacagtat gtttcatatc tctaaccata
     8581 tgatttaaaa acaaatcact tcgcacgggc aggttttggc accgcaacaa agcgcaagac
     8641 acgcagtata ccagtaaaac tattcattcg cggaatctgt taataaagct cgaattgtga
     8701 tgacgatcac acatgttaaa acctataatt aattgctact aaaatattaa tgaattgaaa
     8761 tggtgtctct ttatggcaat taacaataca ggctcgcgac gattactcgt cacgctaaca
     8821 gtcctttttg cagcgctttg cgggctgtat ctactcattg gcggaggctg gctggtcgcg
     8881 attggcggct cctggtacta ccctatcgct ggccttgtga tgctcggcgt cgcctggatg
     8941 ctgtggcgca gtaaacgtgc cgcgctttgg ctatacgccg ccctgctgct cggcaccatg
     9001 atttggggcg tctgggaagt tggtttcgac ttctgggcgc tgactccacg cagcgatatt
     9061 ctggtcttct tcggcatctg gctgatcctg ccgtttgtct ggcgtcgcct ggtcattcct
     9121 gccagcggcg cagttgccgc actggtggtg gcactgctga ttagcggtag tatcctgacc
     9181 tgggccggat ttaacgatcc gcaggaaatc aacggcacct taagcgccga tgccacacct
     9241 gcggaagcta tctcacccgt tgccgatcag gactggcctg cctatggtcg caatcaggaa
     9301 ggtcaacgct tttcacctct gaaacaaatt aacgccgata acgtccataa tctgaaagaa
     9361 gcctgggtgt tccgtactgg cgatgtgaag cagcctaacg atccgggcga aatcaccaat
     9421 gaagtgacgc cgattaaagt gggcgacacc ctttacctgt gtaccgctca ccagcgcctg
     9481 tttgcgctcg atgccgccag cggcaaagag aaatggcatt acgatcctaa gctgaaaact
     9541 aacgagtctt tccagcacgt aacctgccgt ggcgtctctt atcatgaagc caaagcagaa
     9601 acggcttcgc cggaagtgat ggcggattgc ccgcgtcgta tcattcttcc ggtcaatgat
     9661 ggtcgactga ttgcgattaa cgctgaaaac ggcaaactgt gcgaaacctt cgccaataaa
     9721 ggcgtgctca atctgcaaag caatatgcca gacaccaaac cgggtctgta tgaaccgact
     9781 tcgccaccga ttatcaccga taaaaccatc gtgatggcag gttcagttac cgataacttc
     9841 tcaacccgcg aaacgtctgg cgtgatccgt ggttttgatg tcaacaccgg ggagctgctg
     9901 tgggcttttg atcccggcgc gaaagatccg aacgcaatcc cgtctgacga acacaccttt
     9961 acctttaact cgccaaactc ctgggcacca gcggcctatg acgcgacgct ggatctggtc
    10021 tatctgccga tgggcgtgac cacgccggat atctggggcg gtaaccgcac accggaacag
    10081 gaacgttatg ccagctcgat tctggcgctg aatgccacta ccgggaaact ggcgtggagc
    10141 taccagaccg ttcaccacga cctgtgggac atggatcttc cggcacagcc gacgctggcg
    10201 gacatcaccg ttaatggtca gaaagtgccg gttatttacg ctccggcgaa aaccggcaac
    10261 atttttgtgc tcgatcgtcg caatggcgaa ctggtggttc cggccccgga aaaaccggtg
    10321 ccgcaaggtg ctgcgaaagg cgattacgtt actccgaccc agccgttctc tgaactgagc
    10381 ttccgtccga agaaagattt gagcggtgcg gatatgtggg gagccaccat gtttgaccaa
    10441 ctggtgtgcc gcgtgatgtt ccaccagatg cgctatgaag gcattttcac gccgccatct
    10501 gaacagggca cgctggtctt cccgggtaac ctgggaatgt ttgaatgggg cgggatttcc
    10561 gttgatccaa atcgtgaagt ggcaattgcc aacccaatgg cactgccgtt tgtttcgaaa
    10621 ctgatcccac gcggtccggg taacccgatg gagcagccga aagatgccaa aggcacgggt
    10681 acggaatccg gcattcagcc acagtacggt gtaccgtatg gtgtcacgct caacccgttc
    10741 ctctcaccgt ttggtctgcc gtgtaaacag ccagcatggg gttatatctc ggcgctggat
    10801 ctgaaaacca atgaagtggt gtggaagaaa cgtattggta cgccgcagga cagtatgccg
    10861 atgctgggcg ggccaatctc cacggcgggt aacgtgctgt ttatcgccgc tacggcagat
    10921 aactacctgc gcgcttacaa catgagcaac ggtgaaaaac tgtggcaggg tcgtttacca
    10981 gcgggtggtc aggcgacgcc aatgacctat gaagtgaatg gtaagcagta tgtggtgatc
    11041 tccgcaggcg gtcacggtta atttggtacg aagatgggcg actatattgt ggcttatgcc
    11101 ctgccggatg atgtgaaata accataatgc ccggagagat ccgggcatat ttccgaatac
    11161 ggtcttttta taccgtaaac cctaacatca tccccgtatc ttcatgctcc agcagatggc
    11221 agtgcgccat ataagcatgt tctttcggtg cgtcgtgatt aaacttcacc agcacttcac
    11281 tgacattgcc ttctacctta acggtatctt tccagcccgc gcgatgagcc gctggcggtt
    11341 tgccattttc tgacaagata cggaactgcg tgccgtgaat atggaacgga tgcagcatca
    11401 tgtcgcccac gccagagata acccaacgtt cgtactgccc tttcgccgcc gcaaacatcg
    11461 gcttattcat atcaaacgcc tgaccgttga ttttattggc atggtggaaa tcgaacttcc
    11521 cgccgtggtt catatgattc atattaccgt gccccatatg gcccatcatc tggctgtgat
    11581 ccattccggc catcgcctga tcgccatatt tctccattag catctgcata cccatcatat
    11641 cgagcatcgg gtccatagaa agttgcagct tgcgtaccgt cagcccttcc agcgaaggta
    11701 acgcaggcag gctacttaat gtgtctggca aagcaccgga ggcactaata gcaatcggct
    11761 gaatccgcat taccggatgc ggcttgtcaa acggcgcaat cgccatcccc atctggctga
    11821 ccggtagcgt caccaggtca aagggtttgt tgtcgttaac ctccaccagc acttcaaaac
    11881 gctcgcccat cagcaccggc agctcgctca ccttcaccgg ttcaggtagc agaccaccgt
    11941 cgctggcaat cacatacagc gggcgattgt cgctggtggc gaaattgagc gagcgggcat
    12001 tacagccatt gagcaaacgc aggcgcagcc aaccacgcgg ggcagcgtgt tgtgggtaga
    12061 ttgcaccgtt ggtcagcagc gtatcgccaa accagcccac ggcggcggtc atcacatcca
    12121 gttgataatc aatctgccca tcagcgttaa attttttatc ctgaacaatc accggaacat
    12181 catcgatacc ccactgtttt ggcagcatta atttcaggat ctcgtcatct tcaattacca
    12241 ccagcccagc caaccccatc gccacctgtc gcccagtctt gccatgttga tgtggatgga
    12301 accagcaagt agcggcaggt tgatcaacgt tcaacgtcac cgagcgcttg ccacctggcg
    12361 gaataattcc ctgcgggccg ccgtcgactt cacccggtac ttccagcccg tgccagtgca
    12421 acgtcgtctc ttccgtcagt tggttataga tatcaaccgt taccgctttg ccgcgctgta
    12481 atttcaccgc cggccccagc agattgccgt tatagcccca ggtagttgca gttttctcgc
    12541 caaaggtaga ctgacctgcg ccaatagtta actgaatgcg attacgggca tcggtcgtga
    12601 gcaaatcagg gatcggtaac gttgggcgtt ccgccgcaaa gactgcgcgg ctccacagcg
    12661 gcaaggctga agccacaccc agcgcgacgg aatattttaa gaaatcacga cgttgcatag
    12721 ttatttcctt attcttaagc aggcgaaaca aaatcaaacg ttgagcatag tccttcccct
    12781 tacgggaagg tcaagccgca gacacaattt aatcgacaat aatggtcgtc gcctcgctcg
    12841 cagtgtgcta acgtttatct tctttaagcc cctggtagaa gcaatgaaga cgtttttcag
    12901 aacagtgtta ttcggcagcc tgatggccgt ttgcgcaaac agttacgcgc tcagcgagtc
    12961 tgaagccgaa gatatggccg atttaacggc agtttttgtc tttctgaaga acgattgtgg
    13021 ttaccagaac ttacctaacg ggcaaattcg tcgcgcactg gtctttttcg cccagcaaaa
    13081 ccagtgggat ctcagtaatt acgacacctt cgacatgaaa gccctcggtg aagacagcta
    13141 ccgcgatctc agcggcattg gcattcccgt cgctaaaaag tgcaaagccc tggcccgcga
    13201 ttccttaagc ctgcttgcct acgtcaaata atccctgata cctttttgta gaaatattga
    13261 ccgtgcatcc gcggtcaatg ttagctatta tgttgcgccc tttttttacg ggtgttaaca
    13321 aaggaggtat caacccatgg ccgaaaaaaa acagtggcat gaaacgctac acgaccagtt
    13381 tgggcagtac tttgcggtag ataacgttct gtatcatgaa aagaccgatc accaagatct
    13441 gatcattttt gagaacgctg catttggtcg cgtaatggcg ctggatggcg tagtacaaac
    13501 caccgagcgc gacgagttta tctatcatga gatgatgacc catgttccgc tactggccca
    13561 cggtcacgcg aaacatgtgc tgattatcgg cggcggcgac ggtgccatgc tgcgtgaagt
    13621 aacccgacat aaaaacgttg agtcaatcac gatggtggaa atcgatgcgg gtgtcgtgtc
    13681 gttctgccgt cagtatctgc ccaaccataa cgccggtagc tacgacgatc cgcgctttaa
    13741 gctggtgatc gacgatggcg tcaatttcgt taatcaaacc agccagacct ttgatgtcat
    13801 tatctccgac tgcaccgatc ctatcggtcc cggcgaaagt ctgttcacct cagcatttta
    13861 tgaaggctgc aaacgttgcc tgaatcctag cggtatcttc gtcgcacaaa acggcgtctg
    13921 ctttttacag caggaagaag ccatcgacag ccatcgcaaa ctcagccatt acttcagcga
    13981 cgttggcttt tatcagacgg cgatcccgac ctattacggc ggtatcatga cttttgcatg
    14041 ggcgacagat aacgacgcct tacgccatct ctcaaccgaa attattcagg cgcgttttct
    14101 cgcttctggc ctgaaatgcc gttattacaa tccggcaatc catacggcag cttttgcctt
    14161 acctcagtat ctgcaagatg cactggcttc acagccgtcc taaggagaag ataagaaatt
    14221 gaaaaaactg aaactgcatg gctttaataa tctgaccaaa agtctgagtt tttgtattta
    14281 cgatatctgc tacgccaaaa ctgccgaaga gcgcgacggt tatattgctt atatcgatga
    14341 actctataat gccaaccgtc tgaccgaaat cctgtcagaa acctgttcca ttatcggggc
    14401 caatattctt aacatcgccc gccaggatta cgaaccacag ggtgccagcg tcactattct
    14461 ggtgagtgaa gaaccggttg acccgaaact catcgacaaa acagaacacc ccggcccact
    14521 gccagaaacg gtcgttgccc atctcgataa aagtcatatt tgcgtacata cctacccgga
    14581 aagccatcct gaaggtggtt tatgtacctt ccgcgccgat attgaagtct ctacctgcgg
    14641 cgtgatttct ccgctgaagg cgctgaatta cctgatccac cagcttgagt ccgatatcgt
    14701 aaccattgat tatcgcgtgc gcggttttac ccgcgacatt aacggtatga agcactttat
    14761 cgaccatgag attaattcga ttcagaactt tatgtctgac gatatgaagg cgctgtatga
    14821 catggtggat gtaaacgtct atcaggaaaa tatcttccat accaagatgt tgcttaaaga
    14881 gttcgacctt aagcactaca tgttccacac caaaccggaa gatttaaccg acagcgagcg
    14941 ccaggaaatt accgctgcgc tgtggaaaga aatgcgcgag atttattacg ggcgcaatat
    15001 gccagctgtt taacggctct ggcggagctc caggctccgc cagatttatt tacttctgct
    15061 gcacgaaatt gcggtaagcc gccacgacct gcagaaaatc ctcaacgccg catagcgaca
    15121 ggctttcttc gtcgtagtag ttcatcccct cttccatttc atcgccagcg aattccagtt
    15181 gattggcgcg aaccatcacc tcttcaccgt ccatccacag ggtgtattca tgccctgccc
    15241 gttgccagga ccgttcgcta cctttcagtg cgtgcgctgc ttgttccact tcatcaagca
    15301 aggccaggtt ttctttcacc tcttcattaa accagtgccc gaccacttca tgccccatgg
    15361 acatacgcac ctttaccact ccggtaatat cgcgcagaaa ttcgtaatcc atagtgtgtt
    15421 cctctgctcc cggcaatgcg ccgaaatcgc attgcgccat tgatgtaatt atcgcagcct
    15481 taccggagaa aaacagcgga acggcgatgg tttagaaata aaaaatgccc gggaatctca
    15541 ttcaccgggc attgtgtcgt ttatgcgcag cgcgtgcgct tacttattac accgcagtct
    15601 ggaaaatcac cccatcggct ttttcggtgt actgagaaag ttggttgaag ttcagataac
    15661 gataagtatc aacggcagtt ttatctactt gcgcaacgta ggtctggtac tcttccggcg
    15721 tcggcagttt gccaatcagc gccgcaacag ccgccagttc tgcagaagcc aggaagacat
    15781 tcgcgccagt ccccagacgg ttcgggaagt tacgggtaga ggtggaaacc accgtcgcac
    15841 cgtctgctac acgcgcctgg ttacccatac acagagaaca gcccgggatc tcgatacgag
    15901 ccccgctctt accgaagacg ctgtagtagc cttcttcagt caactgtgcg gcgtccatac
    15961 gggttggcgg tgccacccac aggcgggtcg gcaactggcc tttatgcgca tccagcagtt
    16021 tacccgcagc acggaagtga ccgatgttag tcatgcaaga accgataaat acttcgtcga
    16081 tcttctcgcc ctgtaccgca gacagcggac gcgcgtcatc cgggtcgttc ggagcacaca
    16141 ggattggctc tttaatatcc gccagatcga tgtcaatcac tgccgcgtat tccgcatctg
    16201 catcggcttc cagcagctca ggattcgcca gccatttttc catgccctga atacgacgtt
    16261 ccagggtacg acgatcgccg taaccttccg cgatcatcca cttcagcagg acgatattag
    16321 agttaaggta ttcgatgatt ggttctttgt tcagcttgat agtacaacca gcggcagaac
    16381 gctcagcgga cgcatcggta agctcaaagg cctgctcaac tttcagatcc ggcagacctt
    16441 caatttccag aatgcggcca gagaagatgt ttttcttgcc tttcttctca acggtcagca
    16501 gaccttgttt gatggcatac agcggaatgg cgtgtaccag atcgcgcagg gtgatgcccg
    16561 gctgcatttt gcctttgaag cgcaccagaa cggattccgg catatccagc ggcattacgc
    16621 ctgttgcggc tgcaaatgcc accagaccag aacccgccgg gaaagagata ccgatcggga
    16681 aacgggtatg ggagtcacct ccggtaccga cggtatccgg cagcagcata cggttcagcc
    16741 aggagtggat tacgccgtca cccggacgca gcgacacacc gccacggttc ataatgaagt
    16801 ccggcagcgt gtggtgcgtg ttcacgtcaa ctggcttcgg atacgccgcg gtgtggcaga
    16861 aagactgcat caccaggtca gccgagaagc ccaggcacgc caggtctttc agttcatcac
    16921 gggtcatcgg gccggtagtg tcctgtgaac ctacagaagt cattttcggt tcgcagtacg
    16981 cgcccggacg aatgcctttc acgccacagg cacggcctac cattttctgc gccagcgaga
    17041 agccgcgatc gctctcagcg acatctttcg cctgacggaa cacatcactg tgcggcagac
    17101 caagtgcttc acgcgctttg gtggtcaggc cacgcccgat aatcagcggg atacggccgc
    17161 cagcacgcac ttcatcaatc agcacgtcgg ttttcagttc gaaggtcgcc agcagttcgc
    17221 ctgtttcgtg gttacgcact tcacctttgt acgggtaaac gtcaatcacg tcgcccatgt
    17281 tcaggttaga gacgtcgact tcgattggca gtgcacccgc gtcttccatc gtgttaaaga
    17341 agatgggtgc aattttaccg ccgaggcaca aaccaccgcc gcgtttgttc ggcacatgtg
    17401 gaatatcatc gcccataaac cacagaacgg agttcgtggc ggatttacgc gatgaacccg
    17461 tacccacaac gtcaccgacg tacgccagcg ggaaaccttt ctgttgcaga gcttcaatct
    17521 gtttgatcgg gccaacaaca cctggctggt ctggctcaat accttcacgg gcgtttttca
    17581 gcatcgccag cgcgtgcagt gggatatccg ggcgcgacca cgcatccggt gccggagaaa
    17641 ggtcatcggt gttggtttcg ccagtgactt tgaagacggt aacggtcagt ttttcagcca
    17701 gcgccgggcg attcagaaac cattcggcat ccgcccagga ctgcattacc tgcttcgcat
    17761 attcgttgcc tgctttcgct ttctcttcta cgtcatagaa gttatcgaat atcagcagtg
    17821 tgtgagaaag tgctttggca gcgatcggtg ccagtttggc atcatccagc gcgtcgatca
    17881 gcggatgaat gttgtaacca ccctgcatgg tgcccagcag ttcgatggct ttttccggag
    17941 tcagcagagg ggatttggct tcgcctttcg cgatagcagc caggaagcct gctttgacat
    18001 aggcggcttc atcgacgcca gggggaacac ggttggttaa cagatctaac aggaattctt
    18061 cttcgcccgc gggcgggttt ttcagcagct ctacaagtgc ggccatttgg tttgcatcca
    18121 ggggtttggg cgcaatcccc tcagcggcac gctcagctac gtgcttacgg tattcttcta
    18181 gcacgacggt tctcctcgct ctcattgtca tagtgcggca ggcgattctc ttcacgctcc
    18241 tgtgagacag cagtttgtag ggtaaatgcc cagtaccgca acgggcagaa tagcaggatt
    18301 ttgacgacgt gttaatctgt ttacaaaaaa gcaacataaa aaagtggctg aatcgttaag
    18361 gatggtctag agattgtttc cctacgtaaa aacttcgtta attcgcatgg tgataatcac
    18421 ctttctcaac gaatcccaag attagtcaaa atttaaacta ccgcctcttt atactcggat
    18481 taacagcacc tgcaggtggc agttcgccga ccattgcgat ttccttgaga tccgaattat
    18541 gaaaatgact ttgccgttta aaccccatgt gctggcacta atttgcagtg ccgggctttg
    18601 tgccgcctct gccgggctat atataaaaag ccgcacagtg gaagcggctg tggaaacgca
    18661 atcgacacaa ctggctgtgt ctgacgctgc cgcggttacg cttcctgcaa cggtttccgc
    18721 gcctcccgta acacccgccg tcgttaaatc cgcattcagc actgcacaaa tagatcaatg
    18781 ggtcgcgccc gtcgcgctgt atcccgacgc cctactttcg caggtgctga tggcatcaac
    18841 ctatccggca aacgttgctc aagcagtgca atggtcgcac gataatccac ttaaacaagg
    18901 cgatgctgct attcaggcgg tatctgacca gccgtgggac gccagcgtta aatcactggt
    18961 ggcctttcca caattgatgg cattgatggg cgaaaacccg caatgggtgc aaaacctggg
    19021 cgatgctttt ctggcgcagc cgcaggacgt gatggactcg gtacagcgat tgcggcaact
    19081 ggcgcaacaa accggttcgc tgaagtcatc aaacgaacaa aaagttatta ccacaacgaa
    19141 gaaagctgta ccggtaaaac agacagtcac ggcacccgtc ataccatcca ataccgtttt
    19201 aactgccagc cccgtcatta cagagcctgc aacaaccgtc atttccattg agcccgccaa
    19261 tcctgatgtg gtctatattc ccaactacaa cccaaccgtg gtttacggga actgggccaa
    19321 tactgcgtat ccgccggttt atctgccacc accagccgga gaaccgttta ttgacagctt
    19381 tgtgcgcgga ttcggctata gcatgggtgt tgctaccacg tacgcactat tcagcagcat
    19441 cgactgggat gacgacgatc atgaccatca tcatcatgac gatgatgatt atcatcacca
    19501 cgatggcggt catcgtgacg gtaatggctg gcaacacaac ggcgacaaca tcaatatcga
    19561 cgtcaacaat ttcaaccgta tcaccggtga gcatcttact gataagaata tggcatggcg
    19621 gcacaatcca aactaccgta atggtgtgcc ctatcatgat caggatatgg caaagcggtt
    19681 tcatcaaacc gatgtcaacg gcggaatgag tgccacgcag ctacctgctc caacacgcga
    19741 cagccagcgt caggcggcag caagtcagtt tcagcaacga acacacgccg cccccgtcat
    19801 tacacgagat acccaacgtc aggcagcggc acagcggttt aatgaagctg aacactatgg
    19861 gagctatgac gacttccgcg acttcagccg tcgccaaccc ctgacccagc aacaaaagga
    19921 cgccgctcgt cagcgttatc agtcagcttc tcctgagcag cgccaggcag ttcgcgagag
    19981 aatgcagact aacccgcaga tccagcagcg aagagaggca gcgcgtgagc gcattcagcc
    20041 cgcctcgcct gagcagcgcc aggcagtccg cgagaaaatg cagactaacc cacagatcca
    20101 gcagcgaaga gacgcagcgc gtgagcgtat tcagtcagcc tcgcctgagc agcgccaggt
    20161 gtttaaggaa aaagtacagc agcgcccact gaaccaacag caacgtgata acgcccgcca
    20221 gcgtgttcaa tcagcatcac ctgaacaacg tcaggttttt cgggagagag ttcaggagag
    20281 ccgcccacaa cgtctaaacg acagtaaccg tactgccaga ttgaataacg atcaacggtc
    20341 agcagtacgc gaacgtctct ctgagcgcgg agcaaggcga ctggaaaggt aaattacaga
    20401 cgtaaaaaaa gcggcgtggt tagccgcttt tttaattgcc ggatgttccg gcaaacgaaa
    20461 aattacttct tcttcgcttt cgggttcggc aggtcggtaa tgctaccttc gaacacttct
    20521 gccgccaggc ccacagactc gtgcagagtc gggtgcgcat ggatggtcag cgcgatgtct
    20581 tcagcgtcac aacccatttc gattgccagg ccgatttcac ccagcagctc gccgccgttg
    20641 gtaccgacaa tcgcaccacc gatcacacgg tgagattctt tgtcgaaaat cagcttggtc
    20701 ataccgtctg cgcagtcgga agcgatagca cgaccagaag cagcccacgg gaaggtggcg
    20761 gtttcatagc tgatgccttt ctctttcgct tctttctcag tcagacctac ccatgcaact
    20821 tctggttcgg tataggcgat agacgggata actttcggat cgaagtagtg ttttttaccg
    20881 gcgataactt cagcggcaac gtgaccttcg tgaacacctt tgtgtgccag catcggctga
    20941 ccaacgatat cgccgatagc aaagatgtgc ggtacgttgg tacgcagctg tttgtcaacg
    21001 cggatgaaac cacggtcgtc cacttccacg ccagctttgc ctgcgtcgag gtttttaccg
    21061 ttcggcacac gaccaattgc taccagcacg gcgtcgtaac gctgcggttc agcgggtgct
    21121 tttttgcctt ccatcgtcac ataaataccg tcttctttcg cttcaacggc ggtaactttg
    21181 gtttccaaca tcaggttgaa tttcttgctg atacgcttgg tgaagacttt aacgatgtct
    21241 ttgtcagctg ccgggataac ctggtcgaac atttcaacca cgtcaatctg tgaacccagc
    21301 gcgtggtata cggtgcccat ttccagaccg atgataccgc cacccattac cagcaggcgt
    21361 tctggtactt ctttcagttc cagcgcgtca gtggagtccc agatacgcgg atcttcatgc
    21421 ggaataaacg gcagttggat cgggcgagaa cccgctgcaa tgatcgcgtt gtcgaagttg
    21481 atcacggttt taccgttctc accttcaact tccagggtgt tagccccggt aaatttaccc
    21541 agaccgttga ccactttgac tttgcggcct ttcgccatac cagccagacc accggtcagc
    21601 tgattgatca ctttctcttt ccaggtacga atcttgtcaa tatcggtttt cggttcgccg
    21661 aagacgatac cgtgttcagc cagcgctttg gcttcttcga taacttttgc tacgtgcagc
    21721 agtgctttag aagggataca gccgacgttc aggcaaacac cgccaagggt gttgtaacgt
    21781 tctacgatta cggtttccag acctaaatca gcgcaacgga aggcagcgga gtaacctgcg
    21841 gggcctgccc caagtaccac gacctgagtt ttgatttcag tactcatcat gacctctata
    21901 tatttatctc cggcggtcat acccgtcgtc tttcaggccg cagcggcgtt agcttcacgc
    21961 cctcccccca gtcacttact tatgtaagcc cctggggatt ctggcgcttg ctaccttgct
    22021 gcacccagaa atccataggg tatgtgaagt aataccctaa ccaccaccgg gtcgttctat
    22081 ccgtcggtat tttataaaat tgttaacaat ttttaaacaa caaacggcaa ccgatttgtc
    22141 tattcgctaa taacctcaat acattcatga gattaccaga aaaaagccgg ccgttgggcc
    22201 ggctctttta cttacatcac cagacggcga atgtcagaca gcgtgttgtt aatgatggta
    22261 atgaaacggg caccatcagc accgtcgatc acgcggtggt cgaaggagag agaaatcggc
    22321 agcatcagac gcggcacgaa ctctttacca ttccacaccg gctccatcgc ggacttggaa
    22381 acgccgagga tagccacttc cggcgcgttc acaatcggcg cgaagtgggt agtacccagg
    22441 ccgccgatgc tggagatggt gaagcaaccg ccctgcattt cgcccgcagt cagcttaccg
    22501 tcacgcgctt tcttagaaat agtcatcagc tcgcgagaca gctcgatgat gcctttcttg
    22561 ttgacgtctt tgaataccgg aacaaccaga ccgttcgggg tatccaccgc cacaccgatg
    22621 ttgatgtatt tcttcagggt cagacgctga ccgtcttccg acagcgaact attgaagcga
    22681 ggcatctgct caagagctgc agcaacggct ttcatgatga agacaaccgg ggtgatcttc
    22741 acatccagct tacgtttcgc cgcttcttcg ttctgctgtt tacggaacgc ttccagctcg
    22801 gtgatatcgg ttttgtcgaa gtgggtaaca tgcgggatca tcacccagtt acggctcagg
    22861 ttagcaccag aaattttctg gatacggccc agttccactt cttcgatttc accaaacttg
    22921 ctgaagtcca ccttcggcca cggcagcatg cctgggatac cgccgccagt cgccgccgga
    22981 gctgcttctg cacgtttgat agcttctttc acgtaagcct gaacgtcttc gcgcaggata
    23041 cgacctttac ggccagtgcc cttcactttc gctaggttaa caccaaactc gcgtgccaga
    23101 cggcggatca gcggagtcgc gtgaacataa gcgtcgtttt cagcaaattc agatttgcct
    23161 tccgctttcg cagctggtgc tgctgccggg gcttcagctt ttgctgccgg tgccggcgct
    23221 gccgcttcct gtttcgcagg agctgccgca ggcgctgcgc cttcaacttc gaagatcata
    23281 atcagcgagc cagttttcac tttatcgcca acgttgactt tcagttcctt cacgacgcct
    23341 gcaaacggcg ccggaacttc catagaagct ttgtcgcctt ctacggtgat cagtgactgt
    23401 tcagcggcaa ctttgtcgcc cactttcacc atcacttcag tcacttcaac ttcgtcaccg
    23461 ccgatatccg gaacgttaac ttctttcacg ccagctgctg gtgcaggggc cgctgccgga
    23521 gccgcttcct gtttagccgc cggagctgcc gcgcctgctt cacccgcgac ttcgaagacc
    23581 ataatcagcg agccggtaga cactttgtca cccacgttca ctttgatctc tttcacggtg
    23641 ccagcaaacg gagccggaac ttccatagaa gctttatcgc cttctacggt gatcagcgac
    23701 tgttcagctt caactttatc gccaactttc accaggattt cggtcacttc aacttcgtcg
    23761 ctgccgatat ccggaacgtt aacgtctttt gccgccgcag ccgcgggtgc tgctgccgga
    23821 gctgcttctt tcttctcttc tgcctgagca ggtgcagcgt ctgctgcacc gtcggcggaa
    23881 tcgaaaatca taatcagtgc gccggtctgg gttttatcgc caacagagac tttgatctct
    23941 ttaacgatac ccgcctgcgg agacggaact tccatagagg ctttgtcgcc ttctacggtg
    24001 atcagcgact gttcggcttc aactttgtcg cccactttga ccaggatctc ggtgatttca
    24061 acttcatcag ccccgatgtc cggtactttg atttcgatag ccattattct tttacctctt
    24121 acgccagacg cgggttaact ttatctgcat cgatgttgaa tttggcgatt gcgtcagcaa
    24181 ccactttctt atcgatttcg ccacgtttag ccagttcgcc cagcgccgca accacgacat
    24241 aagaagcatc aacttcgaag tggtgacgca ggttctcacg gctgtcggaa cgaccgaagc
    24301 catcagtacc cagtacgcgg tagtcgtcag ccggtacgta agtacggacc tgctcagcga
    24361 acagtttcat atagtcggta gatgccactg ccggagcgtc gttcatcacc tgagcgatat
    24421 acggaacgcg cggagtttcc agcggatgaa gcatgttcca gcgttcacaa tcctgaccat
    24481 cacgcgccag ctcggtgaag gaggtcacgc tataaacgtc agaacctacg ccgtaatctt
    24541 tcgccaggat ctctgccgct tcacggacgt gacgcaggat agaaccggag cccagcagct
    24601 gaactttacc tttgctacct tcaatggttt cgagtttgta gataccttta cggatacctt
    24661 cctcagcacc ttccggcatt gccggcatgt ggtagttttc gttcagcgtg gtgatgtagt
    24721 agtaaacgtt ctcttgtttt tcaccgtaca tacgctccag accgtcatgc ataatgacag
    24781 caacttcgta agcgtaagcc gggtcgtaag agatacagtt cggaatagtc agcgactgaa
    24841 tgtggctgtg accatcttca tgctgcagac cttctccgtt cagggtggta cgaccggaag
    24901 taccgccgat caggaagcca cgcgcttgct ggtcgccagc cgcccagcac agatcgccaa
    24961 tacgctggaa gccgaacatc gagtaataga tgtagaacgg gatcatcggc agattgttgg
    25021 tgctgtaaga ggtcgccgct gccagccagg aacaacctgc gcccagctcg ttgatccctt
    25081 cctgcagaat ctgacctttc tcgtcttctt tatagtaagc aacctgctcg cggtcctgcg
    25141 gggtgtactg ctgaccgttc gggctgtaaa taccaatctg acggaacaga ccttccatac
    25201 cgaaagtacg cgcttcgtcg gcgatgatcg gtaccagacg atctttgatc gacttgttct
    25261 tcagcattac gttcagggca cgaacgaaag cgatagtggt agagatctct ttgctctgct
    25321 cttccagcag cgcgccgaag tcttgcaggc tcggcagctc aagcttctcg gtgaagttcg
    25381 gctgacggct tggcagataa ccgtgcagtt tctgacgctg tgcgtgcaga taggtatgct
    25441 cttcagaacc ttccgggaag gtgatgtacg gcagtttttc gatatctgca tcagacaccg
    25501 gcacattgaa acggtcgcgg atgtgacgca cgccgtccat gttcattttc ttaacctggt
    25561 gcgcgatgtt tttaccttca gccgcgtcgc ccatgccgta acctttaatg gaatgagcaa
    25621 ggattactgt cgctttgcct ttggtttcct gcgctttctt gaatgcagcg tagattttct
    25681 tcggatcgtg accaccacgg ttcagtgccc agatctgctc gtcagtccag tctgcaacca
    25741 gtgctgcggt ttcaggatat ttaccgaaga agtgttcacg aacgtacgca ccatctttcg
    25801 atttgaaggt ctggtagtcg ccgtcaacgg tttcgttcat cagctggatc agtttaccgc
    25861 tggtatcttt acgcagcagt tcatcccaac ggctacccca catcactttg atcacgttcc
    25921 agccagcacc ttcgaagatg ccttccagtt cgttgatgat cttgccgtta ccggtgaccg
    25981 ggccgtcaag acgctgcagg ttacagttga taacgaagac caggttatcc agtttttcac
    26041 gggtagcgat ggtgatcgca cctttggatt ccggttcgtc catttcaccg tcgccgagga
    26101 acgcgtaaac ggtctgttta gaggtatctt tcaggccacg gtgttccaga tatttcagga
    26161 atttagcctg gtaaatagca ccaatcggcc ccagccccat agatacggtc gggaactgcc
    26221 agaattccgg catcagtttc gggtgcggat aggaagagag gccattgccg tgaacttcct
    26281 gacggaagtt atccagctgc tcctgagtca gacgaccttc caggaaagca cgagcgtaca
    26341 cgcccgggga gatgtggccc tggaagtaaa ccaggtcgcc gccatcctgc tcgttgcgtg
    26401 cacggaagaa gtggttaaag cacacatcat aaatggttgc ggaagactgg aaggacgcca
    26461 tatggccgcc cagttcgagg tcttttttcg acgcacgcag caccgtcatg atggcgttcc
    26521 agcggatagc tgaacgaata cggcgttcca gttccagatt acccggatac tccggttgct
    26581 cttcaacggg gatggtgttg atgtagttgc tgatacctgt gcctgcggct acgtttacac
    26641 cgcctttgcg ggcttcagca agcagttggt cgatcagata ctgagcacgc tcaacacctt
    26701 cttcacggat gaccgattcg atcgcctgga gccagtcgcg agtttcgatc ggatccacgt
    26761 catttgggaa acgttctgac atgggttatt ccttatctat ctaataacgt tgagttttct
    26821 ggaacctgtc ccattgaact ctcgccggaa agctcaataa gacaggttct acgtttagtt
    26881 gccgcgcttt tatatgcgct tgatttacaa catcttctgg ataattttta ccagaaaaat
    26941 cactaattct ttcgttgctc cagacgacgc agagaacgct cacggcggct ctcttcacga
    27001 cttctgtcga gcaaaatttc ttcgataaag gccagatggc gatgcgatgc ttcgcgcgct
    27061 tcttccggct taccggccat aatcgcttca aatatgcggg tgcggtgact actcaccagc
    27121 ggcagcatct cgcgacgcga atagagcaat tcgaagttct ggcggacatt ctgggccaac
    27181 atcggctcca tacaccttag cagatgaagc agaaccacat tgtgggccgc ttcagtgaca
    27241 gcaatctgat actggagtac ggcgtttgat tccgcgtcca gatcgccaga ctgctgcgcc
    27301 agttctatgg cgtgatggag ttcacggatg cgttccttgt cttcatcggt actacgcagc
    27361 gcggcgtaat aagcggcgat accttccagg gcgtgtcgtg tttcgagcaa gtcatactgt
    27421 gactcaggat ggtcggagag cagctccacc agcggatcgc tgaagctttg ccataggctg
    27481 ctctggacaa aagtgccgcc accctggcga cgaagcaaca agcccttcgc ttcgagacgt
    27541 tgaatcgcct cacgcaagga gggacgggag acgtcaaact gttttgccag ttcgcgttcc
    27601 ggtgggagtt tttcgcccgg gcggagagtg ccttcgagga tcaaaaactc cagttgctgc
    27661 tcaatcacat cggagagttt tggttggcgg attttgctgt aggccatgag ttcctgtctt
    27721 aagccacttg ccgaagtcaa ttggtcttac caatttcatg tctgtgacgc taaagtaaca
    27781 aagtattcac cttatgtcca tacaggtttt gattgaaatc atgaaactgt gcacatttta
    27841 acaacttgac atatataacg tttcaaagtt gtaaccatgc acaaatgtag actttacgta
    27901 ggaaagggat tttttaacga ttattaaact ataaaaatcc gaattgaacc gattcactta
    27961 ccaattttgt gatttttaat tcaattaaaa cgaatttaaa ttcattctac atattgagag
    28021 gggttgaggc tgagctttac aaacggtttc tttttaagca actcatcttc aaccatgcat
    28081 aaagcgggtg cattcgctgc cgcataccat tattcttgat ctgacggaag tctttttgta
    28141 acaattcaaa cttctttgat gtaaacaaat taatacaaca aacggaattg caaacttaca
    28201 cacgcatcac tgcgtagatc aaaaaaacaa ccaccgcacg aggtttcatg atggaaggtc
    28261 aacagcacgg cgagcagcta aagcgcggcc ttaaaaaccg ccatattcag cttatcgcgc
    28321 tgggtggcgc gatagggacc gggttattcc tgggtagcgc ctccgtaata cagtccgcag
    28381 ggccagggat tatcctgggt tacgccattg ctggttttat cgcctttctg atcatgcgtc
    28441 agctgggtga aatggtggtc gaagaacctg tcgcaggctc ctttagccac tttgcttata
    28501 aatactgggg cagttttgcc ggtttcgcct ctggctggaa ctactgggta ctgtacgttt
    28561 tagttgccat ggctgagctg actgccgtgg gtaaatacat tcagttctgg tatccggaaa
    28621 tccccacctg ggtttctgcc gccgtattct ttgtggtgat taacgccatc aacctgacca
    28681 acgttaaagt gtttggcgag atggagttct ggtttgccat tatcaaagtt atcgcggtgg
    28741 tagcgatgat catcttcggc ggctggctgc tattcagtgg caacagcggc ccgcaggcga
    28801 ccgttagcaa cctgtgggat cagggtggtt tcctgccgca cggcttcacc gggctggtga
    28861 tgatgatggc gattatcatg ttctcgttcg gtggtctgga actggtgggg atcaccgcag
    28921 cagaagctga taacccggag caaagtatac cgaaagcaac taaccaggtt atctaccgca
    28981 tcctgatttt ctatattggt tcgttagccg ttctgctctc actgatgccg tggacccgcg
    29041 ttaccgccga taccagtccg tttgtgctga tcttccacga gttaggcgat acctttgtgg
    29101 cgaatgcgct gaacatcgtg gtactgactg cggcgctctc cgtgtacaac agctgcgtat
    29161 attgcaacag ccgtatgctg tttggtctgg cacaacaggg taatgcgcca aaagcgctgg
    29221 cgtctgtcga taaacgtggt gtaccagtaa ataccattct ggtgtctgca ctggtaacgg
    29281 cgttgtgcgt actgattaac taccttgccc cagagtccgc tttcggactg ttaatggcgc
    29341 tggtggtatc tgcactggta atcaactggg cgatgattag cctggcgcat atgaaattcc
    29401 gtcgcgccaa gcaggaacaa ggcgtggtaa ctcgcttccc tgctctgctt tatccgctgg
    29461 gtaactggat ctgcctgctg tttatggcgg cggtactggt gattatgctg atgaccccag
    29521 gaatggcgat ttcggtatac ctgatcccgg tatggctgat cgtgttaggt atcggctatc
    29581 tgtttaaaga gaaaaccgcc aaagccgtaa aagcgcatta atctctctac gccctcaccc
    29641 gtacagggtg agggcaataa tctttacacc aacgccccgt aaatcgtcag tagtgcaatc
    29701 accaccacga ccacgaacga ggttttcttc gccattgaaa ccgctgcctt cggcgtctcc
    29761 accttatcga catgcggttc acgcgccaga gagaactgcg ccagacgcgt taacacctga
    29821 tactgcgaag tatggaagtc acccagcgaa gcaaaccagg ccggtaacgc tttctcccca
    29881 tgaccgatca aggcatatac cacacccgca agacgaaccg gcacccaatc cagtacatga
    29941 agcacggcat caatgccgga ctgtaaacga tgatgcggcg tctggtatcg cgccagccag
    30001 tattgccatg cacgcaaaaa cgcatacccc atcagcgtaa cgggtcccca gattcccccc
    30061 acaatcaacc agaacagcgg agcaagataa aaacgaaagt taatccacag caatgcattt
    30121 tgcagctcac gcaaatactc acgttcatcg cagcctgccg ggacgccgtt aatcatggtg
    30181 agttcgccag ccatcgtgac acgggcatgg ctatcattac gtgaagcagc tgtcagataa
    30241 gcatgataat gaagacgaac tttacctgcg ccaatacaca gcaaaccaat cagcagccac
    30301 accagcagcg tgggaacgtt gaacaatact ccctgcaatg cgcgtaacag taaaaaagtc
    30361 acgcccatcg caataatggt catgcctaac gtgcgcccga gagaaaaatg tttcacccgc
    30421 cgaaagaacg cttcaagacg atgatcaagc tgccagtgct cgcccaactt aaacaggcgc
    30481 tcgaaaatta acaccagtaa ggttgtaaat agcgtcatgt tgtctccttg ctgaccagcg
    30541 cacgaaaccg cgcccaatca aatgcagggc cgggatcggt tttccgatcc ggcgcaatat
    30601 cacaatggcc cgtcatgtta ttagcgatat ctggatagcg atcaatcagt gcccgcgtaa
    30661 ccgccgcaag ctgttgatac tgcgcatcgg tatacgccag cgtatcggtg ccttcaagct
    30721 caatcccaat agaaaaatca ttgcagcgtt cgcgcccctg atactgagag actcccgcat
    30781 gccatgcacg tttatcgaaa ggaacatact ggactatttc accatcacgg cgaatcaaac
    30841 agtgagcgga gacgcgcaaa tgggcgatct cagcaaagaa aggatgtgcc tgcggatcaa
    30901 tagttccagt gaataatgcg tcgatccacg gaccgccaaa ctcgcctggc ggcaggctaa
    30961 tattgtgcac caccagcagg gtgggtgttt cgtcatccgg gcggcaatcg taatgtggtg
    31021 agggaacgcg gcgcgcgcca accagccacc cctgttctaa caacatgcag gatctcctta
    31081 tatgtggtgc taatacccgg ttcagagtag catgtttcta ctttatgatt cgttagctat
    31141 ctggagtttt aacatgccgc ctcgccgcta taaccctgac acccgacgtg acgagctgct
    31201 ggaacgcatt aatctcgata tccccggcgc ggtggcccag gcgctgcggg aagatttagg
    31261 cggaacagtc gatgccaaca atgacattac ggcaaaactt ttaccggaaa actctcgctc
    31321 tcatgccacg gtgatcaccc gcgagaatgg cgtattttgc ggcaaacgct gggttgaaga
    31381 ggtgtttatt caactggcag gcgacgatgt caccataatc tggcatgtgg atgacggcga
    31441 tgtcatcaac gccaatcaac ccttgttcga acttgaaggc ccatcccgcg tgctgttaac
    31501 gggcgaacgc actgcgctta attttgtgca aaccctttca ggagctgcca gtaaggtacg
    31561 ccactatgtc gaattactgg aaggcaccaa cacgcagttg ttggatacgc gcaaaacctt
    31621 acctggcctg cgttcagctc tgaaatacgc ggtactttgc ggcggcggag cgaatcaccg
    31681 tctggggctt tctgatgcct tcctgatcaa agaaaatcat attattgcct ccggctcagt
    31741 gcgccaggcc gtcgaaaaag cgtcctggct gcacccggat gcgccagtag aagtcgaagt
    31801 agagaatctg gaagaacttg atgaagccct gaaagcagga gccgatatca tcatgctgga
    31861 taacttcgaa acagaacaga tgcgcgaagc cgtcaaacgc accaacggca aggcgctact
    31921 ggaagtgtct ggcaacgtca ctgacaaaac actgcgcgaa tttgccgaaa cgggcgtgga
    31981 ctttatctcc gtcggtgcgc taactaaaca cgtacaagca ctcgaccttt caatgcgttt
    32041 tcgctaattg ctgacagatt tatccgctcc atcgcgggcg gataatctcc ccttccccaa
    32101 ctttcttcgt aacgcctcgc aaatttcttg tctttcgctg caacgaaata aaaaacctcg
    32161 gaagctgctt tcccgtttcg ttttttgccc ctcgcttgtg ctgatggcgt ttgccaaagt
    32221 agcgccaacc aaatcaagga gcgaaacaga tggacaagca acgcggtttt acacttatcg
    32281 aactgatggt ggttattggc atcattgcca ttttaagcgc cattggtatt cccgcttatc
    32341 aaaactacct gcgcaaagct gcactcaccg acatgctaca aacctttgtg ccttaccgta
    32401 ccgccgtaga gttgtgcgcg ctggaacatg gt
//
LOCUS       DAJVUN010000028        30155 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.028, whole genome shotgun sequence.
ACCESSION   DAJVUN010000028 DAJVUN010000000
VERSION     DAJVUN010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30155
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.028"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..255
                     /locus_tag="OQQ76_001040"
     CDS             <1..255
                     /locus_tag="OQQ76_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
                     /protein_id="HCS1967622.1"
                     /translation="IRGEVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQR
                     YFLALEEGVNLLPGFSPELQGVYSETDADGMKRLYGYVLK"
     gene            complement(305..1561)
                     /gene="nupG"
                     /locus_tag="OQQ76_001041"
     CDS             complement(305..1561)
                     /gene="nupG"
                     /locus_tag="OQQ76_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupG"
                     /protein_id="HCS1967623.1"
                     /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY
                     SSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILIN
                     SFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHM
                     QLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSM
                     LLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLS
                     RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE
                     KEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSV
                     VLAFAFMAMFKYKHVRVPTGTQTVSH"
     gene            complement(1763..2842)
                     /gene="mltC"
                     /locus_tag="OQQ76_001042"
     CDS             complement(1763..2842)
                     /gene="mltC"
                     /locus_tag="OQQ76_001042"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417438.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HCS1967624.1"
                     /translation="MKKYLALALIAPLLISCSTTQKGDTYNEAWVKDTNGFDILMGQF
                     AHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRA
                     IIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLK
                     NRLQSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTES
                     SFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAM
                     LNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLT
                     TRHPSAESRRYLYKVNTAQKSYRRR"
     gene            complement(2907..3182)
                     /locus_tag="OQQ76_001043"
     CDS             complement(2907..3182)
                     /locus_tag="OQQ76_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HCS1967625.1"
                     /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH
                     KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK"
     gene            complement(3210..4262)
                     /gene="mutY"
                     /locus_tag="OQQ76_001044"
     CDS             complement(3210..4262)
                     /gene="mutY"
                     /locus_tag="OQQ76_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HCS1967626.1"
                     /translation="MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ
                     VATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNMHKAAQQVATLHGG
                     KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
                     ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSL
                     YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQ
                     RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA
                     APVERLLQQLRTGAPV"
     gene            4423..5142
                     /gene="trmB"
                     /locus_tag="OQQ76_001045"
     CDS             4423..5142
                     /gene="trmB"
                     /locus_tag="OQQ76_001045"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HCS1967627.1"
                     /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV
                     MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA
                     CLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP
                     FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK
                     FEQRGHRLGHGVWDLMFERVK"
     gene            5142..5468
                     /locus_tag="OQQ76_001046"
     CDS             5142..5468
                     /locus_tag="OQQ76_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HCS1967628.1"
                     /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD
                     FINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSEL
                     FDVWWD"
     gene            5652..6371
                     /locus_tag="OQQ76_001047"
     CDS             5652..6371
                     /locus_tag="OQQ76_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2884 domain-containing protein"
                     /protein_id="HCS1967629.1"
                     /translation="MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGE
                     NGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIAL
                     DKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLV
                     NQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGK
                     DVCSRVVTLEDSRKALVGNLK"
     gene            6547..7593
                     /gene="ansB"
                     /locus_tag="OQQ76_001048"
     CDS             6547..7593
                     /gene="ansB"
                     /locus_tag="OQQ76_001048"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HCS1967630.1"
                     /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK
                     SNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKT
                     DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD
                     KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK
                     HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF
                     DTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ
                     TKDPQQIQQIFNQY"
     gene            7710..8717
                     /locus_tag="OQQ76_001049"
     CDS             7710..8717
                     /locus_tag="OQQ76_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1202 family protein"
                     /protein_id="HCS1967631.1"
                     /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK
                     LDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM
                     LTSKGTPASGWSVNFYSFQAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN
                     TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREEAFKKIHQQRDEFNK
                     QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS
                     RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVI
                     K"
     gene            complement(8872..10008)
                     /gene="hemW"
                     /locus_tag="OQQ76_001050"
     CDS             complement(8872..10008)
                     /gene="hemW"
                     /locus_tag="OQQ76_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HCS1967632.1"
                     /translation="MVKLPSLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL
                     CDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP
                     GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF
                     NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW
                     DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG
                     RILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEAAPRAEFSAYTGLC
                     EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE"
     gene            complement(10001..10594)
                     /locus_tag="OQQ76_001051"
     CDS             complement(10001..10594)
                     /locus_tag="OQQ76_001051"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HCS1967633.1"
                     /translation="MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL
                     TFIENAILKARHAAKVTGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKL
                     LETLKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF
                     FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG"
     gene            complement(10602..10892)
                     /locus_tag="OQQ76_001052"
     CDS             complement(10602..10892)
                     /locus_tag="OQQ76_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417428.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggU family protein"
                     /protein_id="HCS1967634.1"
                     /translation="MNAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD
                     GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN"
     gene            complement(10889..11455)
                     /gene="yggT"
                     /locus_tag="OQQ76_001053"
     CDS             complement(10889..11455)
                     /gene="yggT"
                     /locus_tag="OQQ76_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotic shock tolerance protein YggT"
                     /protein_id="HCS1967635.1"
                     /translation="MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVT
                     QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTI
                     GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL
                     LLYVINMGVAEVLQATGNILLPGLWMAL"
     gene            complement(11473..12177)
                     /gene="yggS"
                     /locus_tag="OQQ76_001054"
     CDS             complement(11473..12177)
                     /gene="yggS"
                     /locus_tag="OQQ76_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate homeostasis protein"
                     /protein_id="HCS1967636.1"
                     /translation="MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIA
                     EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT
                     IDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
                     RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM
                     VRIGTAIFGARDYSKK"
     gene            12195..13175
                     /locus_tag="OQQ76_001055"
     CDS             12195..13175
                     /locus_tag="OQQ76_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417425.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HCS1967637.1"
                     /translation="MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDV
                     EELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQ
                     LEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
                     YIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSEPIRLALTAAETG
                     HLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLLQKLEVDKQEGRVAL
                     FELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL"
     gene            complement(13351..13767)
                     /gene="ruvX"
                     /locus_tag="OQQ76_001056"
     CDS             complement(13351..13767)
                     /gene="ruvX"
                     /locus_tag="OQQ76_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HCS1967638.1"
                     /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNL
                     IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE
                     ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY"
     gene            complement(13767..14330)
                     /locus_tag="OQQ76_001057"
     CDS             complement(13767..14330)
                     /locus_tag="OQQ76_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HCS1967639.1"
                     /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLE
                     NLKIEGILEKLKITPEPRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDN
                     TVMTTSRDVLETLGTDKQPSDVLVALGYASWEKGQLEQEILDNAWLTAPADLNILFKT
                     PIADRWREAAKLIGVDILTMPGVAGHA"
     gene            complement(14439..15389)
                     /gene="gshB"
                     /locus_tag="OQQ76_001058"
     CDS             complement(14439..15389)
                     /gene="gshB"
                     /locus_tag="OQQ76_001058"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HCS1967640.1"
                     /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY
                     LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVLLMRKDPPFDTEFIYATYIL
                     ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK
                     PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEP
                     VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG
                     DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ"
     gene            complement(15402..16133)
                     /gene="rsmE"
                     /locus_tag="OQQ76_001059"
     CDS             complement(15402..16133)
                     /gene="rsmE"
                     /locus_tag="OQQ76_001059"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014226833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HCS1967641.1"
                     /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD
                     GSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL
                     GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC
                     AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG
                     PRVLRTETTALTAITALQVRFGDLG"
     gene            complement(16213..16920)
                     /gene="endA"
                     /locus_tag="OQQ76_001060"
     CDS             complement(16213..16920)
                     /gene="endA"
                     /locus_tag="OQQ76_001060"
                     /EC_number="3.1.21.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease I"
                     /protein_id="HCS1967642.1"
                     /translation="MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPG
                     TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG
                     RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK
                     AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV
                     QGNHNPYVQRACQARKS"
     gene            complement(17015..17512)
                     /locus_tag="OQQ76_001061"
     CDS             complement(17015..17512)
                     /locus_tag="OQQ76_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HCS1967643.1"
                     /translation="MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG
                     TSAGTAWLESYKIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM
                     MENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGE
                     QLVAK"
     gene            complement(17589..18983)
                     /gene="galP"
                     /locus_tag="OQQ76_001062"
     CDS             complement(17589..18983)
                     /gene="galP"
                     /locus_tag="OQQ76_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/proton symporter"
                     /protein_id="HCS1967644.1"
                     /translation="MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIA
                     DEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA
                     PNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS
                     DTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTS
                     AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPK
                     IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVL
                     GTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA
                     TNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERN
                     LMKGRKLREIGAHD"
     gene            complement(19419..20573)
                     /gene="metK"
                     /locus_tag="OQQ76_001063"
     CDS             complement(19419..20573)
                     /gene="metK"
                     /locus_tag="OQQ76_001063"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HCS1967645.1"
                     /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET
                     YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD
                     INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW
                     LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT
                     SATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF
                     DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK"
     gene            complement(20877..21092)
                     /locus_tag="OQQ76_001064"
     CDS             complement(20877..21092)
                     /locus_tag="OQQ76_001064"
                     /inference="COORDINATES: protein motif:HMM:NF037550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967646.1"
                     /translation="MGITSAGMQSRDAECGERIFTRTVRQVKQQTTVHYFVSPPRPPV
                     KTNPQAKTLISTRLEVATRKKRRVLFI"
     gene            21228..21359
                     /gene="yqgB"
                     /locus_tag="OQQ76_001065"
     CDS             21228..21359
                     /gene="yqgB"
                     /locus_tag="OQQ76_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417414.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response protein YqgB"
                     /protein_id="HCS1967647.1"
                     /translation="MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII"
     gene            21368..23344
                     /gene="speA"
                     /locus_tag="OQQ76_001066"
     CDS             21368..23344
                     /gene="speA"
                     /locus_tag="OQQ76_001066"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HCS1967648.1"
                     /translation="MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWW
                     GNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRS
                     INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA
                     HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPR
                     LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQ
                     MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE
                     YANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAE
                     DAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGTFSLQERAWAEQ
                     LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL
                     PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG
                     AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQF
                     RDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE"
     gene            23481..24401
                     /gene="speB"
                     /locus_tag="OQQ76_001067"
     CDS             23481..24401
                     /gene="speB"
                     /locus_tag="OQQ76_001067"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HCS1967649.1"
                     /translation="MSTLGNQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM
                     ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS
                     EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE
                     FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ
                     IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA
                     PAYDQSEITALAAATLALEMLYIQAAKKGE"
     gene            complement(24607..25365)
                     /gene="loiP"
                     /locus_tag="OQQ76_001068"
                     /gene_synonym="yggG"
     CDS             complement(24607..25365)
                     /gene="loiP"
                     /locus_tag="OQQ76_001068"
                     /gene_synonym="yggG"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease LoiP"
                     /protein_id="HCS1967650.1"
                     /translation="MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQ
                     VKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAF
                     AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA
                     GGIVGSLSQSQLGDLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLA
                     KLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK"
     gene            25643..27634
                     /gene="tkt"
                     /locus_tag="OQQ76_001069"
     CDS             25643..27634
                     /gene="tkt"
                     /locus_tag="OQQ76_001069"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1967651.1"
                     /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF
                     LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE
                     VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME
                     GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG
                     HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ
                     LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP
                     SDFDAKAKEFIAKLQANPAKIASRKASQNAIETFGPLLPEFLGGSADLAPSNLTLWSG
                     SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL
                     MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE
                     RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA
                     AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG
                     LNGAIIGMTTFGESAPAELLFKEFGFTVDNVVAKAKELL"
     gene            27948..28391
                     /gene="cmtB"
                     /locus_tag="OQQ76_001070"
     CDS             27948..28391
                     /gene="cmtB"
                     /locus_tag="OQQ76_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IIA"
                     /protein_id="HCS1967652.1"
                     /translation="MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ
                     AIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIG
                     LSAADADSHIGAIQALSELLCEEEILEQLLTASPEKQLADIISRG"
     gene            28419..29807
                     /gene="cmtA"
                     /locus_tag="OQQ76_001071"
     CDS             28419..29807
                     /gene="cmtA"
                     /locus_tag="OQQ76_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HCS1967653.1"
                     /translation="MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWL
                     PNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSM
                     IMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANT
                     FVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMV
                     TSNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIA
                     GGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLI
                     LKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFR
                     KRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLD
                     TLFNQLTAEHKH"
     gene            29822..>30155
                     /locus_tag="OQQ76_001072"
     CDS             29822..>30155
                     /locus_tag="OQQ76_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HCS1967654.1"
                     /translation="MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWK
                     AALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSG
                     YSAGYSYEY"
BASE COUNT         7390 a         7562 c         7953 g         7250 t
ORIGIN      
        1 attcgcggtg aagtggagtt ggtgcggatt cgtgatgccg aagggcgaat tgcggcagaa
       61 ggggcgttgc cttatccacc tggcgtgctt tgcgtggtac ccggggaagt ctggggtggg
      121 gcggttcaac gttatttcct tgcactggaa gaaggggtaa atttgttgcc gggattttcg
      181 ccggagctgc aaggtgttta tagcgaaacc gatgcggatg gcatgaaacg gttgtacggt
      241 tatgtgttga agtaagaata aaaaaaacgg gtcaccttct ggcgacccgt ttttctttgc
      301 gtaattagtg gctaaccgtc tgtgtgcctg tcgggacacg aacgtgttta tatttgaaca
      361 tcgccatgaa cgcgaaggcc agaaccacgg agtaaccagc gaaaatcaac catacggtct
      421 gccagtcggt aatgccgttt tgggtgtaca tctcaacaac tttaccgctc acgatgccgc
      481 cgaggataca gccgaagccg ttagtcatca tcaggaacat cccttgtgca ctggcgcgaa
      541 ttgccgggct aacttctttt tcgacaaaca ccgaaccaga gatgttgaag aagtcgaatg
      601 cgcaaccgta aacgatcatc gacagtacca gcagtacagt accgaacgga gtcgggtcgc
      661 cgtaagcaaa cagcgcaaaa cgcaggatcc acgccacaat actgatcatc attacgttct
      721 taataccgta gcggcttaag aagaacggga tggtcagaat gaacagggtt tcagagatct
      781 gcgaaatcga catgatgatt gacgcatgct gcacaataaa gctgctggca aacatcggat
      841 ctttgtcgaa gctgtgcagg aaggtattac cgaacatgtt ggtaatctgc agttccgcgc
      901 ccagcagcat tgagaagata aagaagattg ccatacgctt gtttttaaac agcgcgaatg
      961 catcgaggcc cagcagggtt gtccagctct gattcgcttg ctgtttagca accggaatat
     1021 gcggcagagt cagggtaaac agaaccagaa tggcggaaag tgctgcgcca atatacagct
     1081 gcatgtggct taattcgaag ccagacaggc tcaccaccca cattgccatg ataaagccga
     1141 tggtgcccca gatacggatt ggcgggaagt cagtaacgat atccatcccg gcattttgca
     1201 ggcgatagta agagatggtg ttgattaacc caagcgttgg catataagca aacgagttaa
     1261 tcaatatcac aaggaacatc gcctccggtg tcgtgacctg tgccgccatg aacagcgtga
     1321 tagcgccaat ggtgtggcaa atggcatata cccatttcgc acttaaccat ttgtcggcca
     1381 caatccccag cagcgcaggc ataaagaccg ctgcgatacc cagtgagcta taaactgcgc
     1441 caatagaagc accgtcaaac ttcagggtaa caaacatata ggagccgagg gtcgtcagcc
     1501 aacttcccca cagacagaac tgcagaaaag agaggatttt cagctgcagc ttaagattca
     1561 tgttaatttc ctcacatcgt gatgcggatg agtgtttgaa aaagcacatt tgaccgtgcg
     1621 agatgatggg attctatcaa cttcgcggac tggttttttg ttacctgtgg caaataattg
     1681 caaacattcc caatttgcaa aacgaaattg tgatgtggat aacatttttg cccctgagca
     1741 tcgtcagggg cggttaatgg aattatcggc ggcggtagga tttttgcgcg gtattcactt
     1801 tataaagata acggcgagat tccgcagagg gatggcgggt cgtcagcgtc tgataaacat
     1861 cgcccggcgt catggtgtta ataatattgg cagcctgaat cttatcattc gaaaagactc
     1921 gcagcacgct gcctgcgccg ccgttatagg cggtgatgac ggcataacgc cgcgatgttg
     1981 ggttatcaat tccgccgaga taaacattgt tcagcatcgc cagatacgcg gtgccggtat
     2041 caatattgct ggcaggatca aacaagaaac tgcggctcgg cgtgccggat ttcccctgcg
     2101 agcggaacac atctttcccg gcagtatgtt gtaccacctg cattaatccc agcgcatcgg
     2161 aacggctgac cgcatacggg ttaaaggaag attcggtctg cataattgcc agaatcagcg
     2221 actcatcaac gccatatttc cgtgacgcct ggcggaccat gccgagatat ttgtgcgcac
     2281 gtttatcaag gtggttcggt accatgttaa tggtgacgct gtagatgata cgcagcccgt
     2341 tactgcggct ttgcagacgg tttttcagca gataatccgc gaagttgctt gcgcgacctt
     2401 cccagcgaat cggctgcccg gtgttgtcca ccacctgacc gtaaaggaaa ggttctttcg
     2461 aaatcgtaat atcatcaacg tcggaataga gatcgaccga actcggatcg tcacccatca
     2521 gcaacgtttt gataattgcc cggcgcaaat gcgcggcagg ttctgtcccg gcgatagttt
     2581 cgatagtaat cgtaccgtca tcgaagttga tgtggctgcg ggtctgatat tgatcggtgt
     2641 atttcacgta gtccttagga ccggcgatca ccacctcttt gaatccccag atgttctcaa
     2701 tattgtgggc aaattgcccc atcagaatat caaaaccgtt ggtatctttg acccaggctt
     2761 cgttataggt atcgcctttt tgggtcgtcg aacaggagat gagcaacggc gcaatcaaag
     2821 ccagcgcgag atattttttc atcattccgg gtgcgtgttg tgtttgtttt tatgcaagtt
     2881 gccggaggcg tgctccggca ctgtttttat tttttatctt ccggcgtata gccctcgata
     2941 tgcacctctt taccctcgaa caggaagttg accatctcct gctcaagcag cttgcggtgc
     3001 tcggcattca tcatgttgag tttcttttca ttaatcagca tggtttgctt gtgctgccac
     3061 tgcgcccagg cttctttgga gatctcgtta tagatgcgtt ttcccagctc gccggggtac
     3121 agctgaaaat cctgaccttc tgcttctcgt tgcaggaaag tacaaaaaat cgttctgctc
     3181 ataaatcatc ctctttatcg actcacgcgc taaaccggcg cgccagtgcg taactgctgt
     3241 aacaaacgct ccacgggagc cgccaggcca actgacggcg gttgcgctaa gttataccag
     3301 agcgcattgc cttcatccat gcagccggtg aatgacgaca cgggaagcca cataggcaca
     3361 atatctaagt ggaaatggct gaaggtatgc cgaaacgcgg tcagttgcgt caggttatcg
     3421 gcagcaatct gccgttgcgc cagccactgc cgcaaacttt cttcgtcggc aaactgcggg
     3481 aaacagtata aaccgcccca caatccgctc ggcggacgct gcgccagcaa tacttcatct
     3541 tcgtgctgta acagcaaaaa gtagccggtg cgctccggca gcgtctgttt cggttttttg
     3601 cccggataaa gcgaccagct attattggcg gcggcaatac atccgttttg tagcggacag
     3661 agcgaacatt tcggcttcga gcgcgtacaa atcatcgcgc ccaaatccat catcgcctga
     3721 ttaaaccgtt ccacgccgac cgcgggcgtc acctgctcgc tcaaactcca taatttattc
     3781 tcgacctctt ttttcccagg ccagccgctt acagcatagc agcgcgccag cacgcgtttg
     3841 acgttaccgt cgagaatcgg aaagtgctta cccagagaaa gcgagagaat cgcgcctgcg
     3901 gtggaacgcc cgacgcccgg taacgccgcg acttcttcaa aggtttccgg gaatttaccg
     3961 ccgtgtaagg tcgccacttg ttgtgccgct ttatgcatat tgcgcgcgcg ggcgtaatag
     4021 ccaagcccgg tccacaagtg gagaacttcg tcgagcggcg cattggcgag atcggtcacc
     4081 gtcgggaagc gcgccataaa gcgttcaaaa taggggataa cggtcgcaac ctgagtttgt
     4141 tgcaacatca cttctgagag ccatactttg tagggcgtct tgtcaatttg ccagggcagc
     4201 gtttttcgcc cgtatttatc gtaccagtcc agaacctggg ctgaaaattg cgacgcttgc
     4261 atggtcaccg aattcactgt tgttgggggc aagattgcag cacagcgacg gcagggtgta
     4321 aaccggaact ttccgcagcc acggccttat catgcttgca tccggcaact aactttggat
     4381 aatgcccgtt ttcagaacac tttcacaagc gactaaatct ttatgaaaaa cgacgtcatt
     4441 tcaccggaat ttgatgaaaa cggccgccca ctgcgccgta tccgtagttt tgtgcgccgc
     4501 caggggcgac tgaccaaagg ccaggaacat gcgctggaaa actactggcc ggtgatgggc
     4561 gttgagttca gcgaagatat gctggatttc cccgcgcttt ttggccgtga agcgccggtg
     4621 acgcttgaga ttggttttgg catgggggcg tcgctggtgg caatggctaa agatcgccct
     4681 gagcaggact tcctcggcat tgaagtgcat tcaccgggcg ttggtgcgtg cctggcttct
     4741 gcgcatgaag aaggtttaag caacctgcga gtgatgtgtc acgatgcggt tgaagtgctg
     4801 cataaaatga ttcctgacaa ttcattgcgc atggtgcagc tctttttccc tgacccgtgg
     4861 cacaaagcgc gccataataa acgccgtatc gtacaggtgc cgtttgccga actggtaaaa
     4921 agcaaactgc agctgggggg cgtattccat atggcgaccg actgggaacc ttatgcggaa
     4981 catatgcttg aagtgatgtc ttctattgac ggttataaaa acctgtcaga gagcaatgat
     5041 tacgtaccgc gtccggcatc acgtccggtg acgaaatttg aacaacgtgg tcatcgtctt
     5101 ggtcacggag tatgggactt aatgttcgag agggtgaaat aatggcaaag aaccgtagcc
     5161 gtcgtctgcg taaaaaaatg cacatcgacg aattccagga attaggattt tcggtggcat
     5221 ggcgattccc ggaaggtaca tcggaagaac agattgataa aaccgttgat gattttatta
     5281 acgaggttat cgaaccgaac aaactggcct ttgacggcag cggttatctg gcctgggaag
     5341 gtctgatctg catgcaggaa atcggcaaat gcaccgaaga acatcaggcg attgtgcgta
     5401 agtggctgga agagcgcaaa ctggatgagg tacgcaccag cgaacttttc gacgtttggt
     5461 gggactaaga aagcatacgg gcgatgacaa atgcaaaact gcctgatgcg ctacgcttat
     5521 caggcctgga aagatgcacg atcgagtagg cgggataagg tgtttacgcc gcatccggca
     5581 tggaaaacgc gtactttgtt atcaatctgg ggccagcaaa tgctggcctg attttttctt
     5641 gagggaagac tatgatgcgc aaaatgctgc tggcggcagc actttcagtg acggcaatga
     5701 ccgctcacgc cgactaccag tgcagcgtca cgccgcgtga cgatgtgatt gtcagcccgc
     5761 aaaccgtgca ggtgaagggc gaaaacggca atctggtgat cacgccagac ggcaacgtga
     5821 tgtataacgg taagcaatat tccctgaatg ccgcccagcg cgagcaggcg aaggattatc
     5881 aggctgaact acgcagcacg ctgccgtgga ttgatgaagg cgcgaaaagc cgcgtcgaaa
     5941 aagcccgtat tgcgctggat aaaattatcg ttcaggagat gggcgaaagc agcaaaatgc
     6001 gcagccgtct gaccaaactt gatgcgcagc tgaaagagca gatgaaccgc attatcgaaa
     6061 cgcgcagcga tggcctgacg tttcactata aagccattga tcaggttcgc gccgaaggcc
     6121 agcaattagt gaatcaggca atgggtggaa ttttacagga cagcattaat gaaatgggcg
     6181 cgaaagcggt gctgaaaagc ggcggtaacc cattacagaa tgtgctggga agcttggggg
     6241 ggctgcaatc ctcaatccaa accgagtgga aaaagcagga aaaagatttc cagcagtttg
     6301 gcaaagatgt ttgtagccgc gttgtgactc tggaagatag ccgcaaagcc ctggtcggga
     6361 atttaaaata atcctctatt ttaagacggc ataatacttt tttatgccgt ttaattcttc
     6421 gttttgttac ctgcctctaa ctttgtagat ctccaaaata tattcacgtt gtaaattgtt
     6481 taacgtcaaa tttcccatac agagctaagg gataatgcgt agcgttcacg taactggagg
     6541 aatgaaatgg agtttttcaa aaagacggca cttgccgcac tggttatggg ttttagtggt
     6601 gcagcattgg cattacccaa tatcaccatt ttagcaaccg gcgggaccat tgccggtggt
     6661 ggtgactccg caaccaaatc taactacaca gcgggtaaag ttggcgtaga aaatctggtt
     6721 aatgcggtgc cgcaactaaa agacattgcg aacgttaaag gcgagcaggt agtgaatatc
     6781 ggctcccagg acatgaacga taatgtctgg ctgacactgg cgaaaaaaat taacaccgac
     6841 tgcgataaaa ccgacggctt cgtcattacc cacggtaccg acacgatgga agaaaccgct
     6901 tacttcctcg acctgacggt gaaatgcgac aaaccggtgg tgatggtcgg cgcaatgcgc
     6961 ccgtccacgt ccatgagcgc agacggtcca ttcaacctgt ataacgcggt agtgaccgca
     7021 gctgataaag catccgctaa tcgtggcgtg ctggtggtga tgaacgacac tgtactggac
     7081 ggtcgcgatg taaccaaaac caacaccacc gacgtagcga ccttcaagtc tgttaactac
     7141 ggtcctctgg gatacattca caacggtaag attgactacc aacgtacccc ggcacgtaag
     7201 cacaccagcg atacgccatt cgatgtctct aagctgaatg agctgccgaa agtcggcatc
     7261 gtttataact acgctaacgc atccgatctt ccggctaaag cactggtaga tgcgggctat
     7321 gatggcatcg ttagcgctgg tgtgggtaat ggtaacctgt ataaatccgt gttcgacacc
     7381 ctggcaaccg ccgcgaaaaa cggcactgca gtagtgcgtt cttcccgcgt accgacgggt
     7441 gctaccactc aggatgctga agtggatgat gcgaaatacg gcttcgtcgc ctctggcacg
     7501 ctgaacccgc aaaaagcgcg cgtcctgctg cagctggctc tgacgcaaac caaagatccg
     7561 cagcagatcc agcagatctt caatcagtac taatcacctc gccccggtat cgtgccgggg
     7621 ctttttcact tcagacttac gtccattgcc aattttcatt accctaatga taatcaccgg
     7681 aataaattat tccgcgtgag gtttttcggg tgaaaaagca atggattgtt ggcacggcac
     7741 tgcttatgtt gatgactggt aatgcctggg cagatggcga accgccaact gaaaatatct
     7801 taaaagatca attcaaaaag cagtatcacg gcattctcaa gcttgatgct atcaccttaa
     7861 aaaatcttga tgctaagggt aatcaggcca cctggtcagc ggaaggcgat gtctcttcca
     7921 gtgacgatct ctatacctgg gtcggtcagt tggcagatta cgaactgctc gaacagacct
     7981 ggacgaaaga taaaccggta aaattctcgg cgatgttaac cagtaaagga acgcccgcgt
     8041 ctggctggtc ggtgaacttt tactcttttc aggcggcagc cagcgatcgt gggcgggtgg
     8101 tcgacgatat caaaacgaat aataaatatc tgatcgtgaa tagcgaagat ttcaattatc
     8161 gctttagtca gcttgaatct gcgttgaata cccagaagaa ctcgattcct gcgctggaaa
     8221 aggaagtgaa agcgcttgat aagcaaatgg tggcggcgca gaaagcagcg gatgcatatt
     8281 ggggaaaaga tgcaaacggt aagcaaatga cccgcgaaga agcctttaaa aaaattcacc
     8341 aacagcgtga tgagtttaat aaacagaacg atagcgaggc gttcgcggtt aaatatgaca
     8401 aagaggttta tcaaccggcg attgcggcat gtcataaaca gagtgaagag tgttatgaag
     8461 tgccgattca gcagaaacga gatttcgata tcaacgaaca acggcgacag acttttctgc
     8521 aatcacaaaa actcagccgt aaattgcagg atgactgggt aacgctcgaa aaagggcaat
     8581 atccgttaac gatgaaagtt tcagaaataa acagtaaaaa agtcgcgatt ttgatgaaaa
     8641 ttgacgatat caaccaagct aatgaacgct ggaaaaaaga taccgaacaa ctgcggcgca
     8701 atggggtgat taagtaagtt tgatatagtg cacgatttgt agcaggatgc ggcgttgacc
     8761 ccgcatccgg caatcaacgt ctgatgcgac gcttgcgcgt cttatcagac ctacaaccgt
     8821 tgccacatgt aggctggata aggcgttcac gccgcatccg gcaatacaag tttactcagc
     8881 cagaaaaagc tccagcagcg aatttaaaaa cagcttccca tgttccgtta tctgccagta
     8941 atccgcacat tctgtgagat aaccctgggc aatcgcctcg tctaactgtg ggcgaatcac
     9001 atcttcgcaa agcccggtat acgcactaaa ctctgcgcgt ggcgcggcct ccagcaagcg
     9061 aaagcggttc ataaagaact caaacggctt atctgcggct tcgacatcac gctggctttc
     9121 cagatacctt ccttgcataa aaccacgagg atgacgcgtt ttagtggtac gcagaatgcg
     9181 cccatccggg aaggtgactt tgccgtgcgc gccgcagcca ataccgatgt agtcaccaaa
     9241 tcgccagtag ttgagattgt gctggcactg ataaccgggt ttggcgtaag cggaagtttc
     9301 atattgctga taacccgctg cggttaataa ctgatgcccc tgttcgaaaa tatcccacag
     9361 cgcgtcatcg tccggcagca ccggtggtcg cgaaccaaac agcgtattgg gttcgatggt
     9421 cagttgatac caggaaagat gcggcggatt cagttcaatg gcctggcgta gatcgccaag
     9481 cgcctcttcc agtgattgat ccggtagtcc atgcatcaaa tcaaggttaa agctacgtaa
     9541 ccctaaaccg ctcgccagct ttgccgctcg tttcgcttct tgcgggccat gaatgcgccc
     9601 aagtcgtttc agcttttctt cgctaaaact ctgcacacca atagagatgc ggttcacacc
     9661 agcacgctga taatcgacaa agcgatcggc ttctaccgta ccagggttcg cttccatagt
     9721 aatttctgca tccgctgcca gcggcaaacg cgcacgcacg ccgtccagca gcgtttgcat
     9781 cgccgggccg gaaagcaggc tcggcgtacc accgccaata aagattgtct ttacttcacg
     9841 gccctgagcg taagccacat cattgtccag atcgcaaagc agatgctgaa cataatcgtc
     9901 gtgcggcact tctcctttca acgcgtgaga gttgaaatcg cagtacgggc atttctgcac
     9961 gcaccacggg atgtgaatgt agagactcag cgacggtaat ttaaccatta cgtaaagcgt
    10021 ccagcagcag tttcaacgcc tgaccacggt gggaaatggc gctcttttct tcgcgggtca
    10081 gttcggcggc ggttttccct tcggaaggta cgaagaagat tggatcataa ccaaagccac
    10141 cagtgcccgc tggttcgcga gtaatcacgc ccggccagct gccgtggcat accagcggag
    10201 tcggatcttc cgcgtgacgc agatatacca gcacgcagtg gaaacgtgcc tgacgttggt
    10261 cgtccggtac gtctttcagt gtttccaaca gtttttgcag attcttttga tcggtcgcgt
    10321 cttcaccgga ataacgcgcg gagtaaatac ccggcgcgcc acccagcgca tctaccgcca
    10381 gaccagagtc gtcggcaatt gccggtaaac cggtcacttt tgccgcatgg cgcgctttca
    10441 gaatcgcgtt ttcgataaag gttaggccgg tttcttcagc ggaatcaacg ccgaggtctg
    10501 tttgtgccac gatatcaaga ccaaagtcgc taagcagcga cgccagctca cgcactttac
    10561 cggcattgcc ggttgcgagg acaacttttt gcataggata cctaattaat taacgccgcg
    10621 atttctggcg ggatttgttg cggattaatg attttaattt gtttgtggcg gccaagttcg
    10681 cctttttcaa tcaccacctg gcttttggca acccggaatt gcttaccgag aaacttcacc
    10741 agatgactgt tggcctggcc gtcaactggc ggcgcggtaa tggcgacttt aacttcgtcg
    10801 ccatgtaaac cgacaataga atcacggctg gctttcggct gaatatagag ccgtaaaacc
    10861 agaccgtcat cattaactgt tacggcattc ataacgccat ccacagcccc ggcagcagga
    10921 tgtttccggt tgcctgtaat acttctgcga cacccatatt gatgacatac agcagcagaa
    10981 cgaggatcat cggcgagaaa tcaatcccac ccattgccgg tagcaagcgg cgaatcgggc
    11041 gcagcagcgg atcggccagc tgaatcagca cgtattcaat cgggctacga ccctggctta
    11101 cccagctcat aatcgccatc accagcagga cccagaaaat cagcaagccg atggttttca
    11161 gcagaatcag taaaccggca atccagatga ttggcaggaa ggtcaccact ttaaacagca
    11221 caatggcttt gataaaactg agaatatagg caaccagcag cgaggcgctg tcaatgggac
    11281 ccattgccgg aataacgcgg cgcagtggcc cgataattgg ctgcgttacc ttcactacaa
    11341 actgtgagaa ggggttgtaa aaatcacaat gagcccactg catccagatg cgtaataaca
    11401 gcaccatggt atacagctca atgaccgttg aaagcaggaa agtcaacgta ttcatggcgt
    11461 tcctttaatt ccttattttt tagagtaatc acgcgcacca aaaattgcag tgccgatacg
    11521 aaccatcgtg ctacctgccg caatggcggc ttccatatcg tccgacattc ccagagagag
    11581 cgtgtcgata tgcgggtagc gcgttttcag tccggcaaat gctacagcca tttggcgtgc
    11641 aacttcaaac tgccttacat attctgactc aggcgcaggg attgccatca gcccgcgcag
    11701 acgtaaacgc ggtagttcag cgaccgccgc tgccagctcg tccagttctg ccagttgaat
    11761 cccagactta ctgttttcat cactaatatt aatttgaatc agtacgttaa gagggggaag
    11821 ttctgccggg cgctgatcgt tgaggcgggt agcaatgcgc aaacggtcga tggtatgaca
    11881 ccagtcgaaa tgctctgcca ccaggcggct tttattagac tgcaacgggc caataaaatg
    11941 ccattctaat cctgttacgc ccagttcctg aaagtggcga attttatcta ccccttcctg
    12001 aacgtagttt tcaccaaatt gacgctgccc ggcatcaatg gcttctgcga tggcgctcgc
    12061 aggttttgtt ttactgactg caagcagcgt aatttcttct ggagaacggc cgcaacgcgt
    12121 tgcagccgct gagattttgt cccggacctg tgccaggtta tgcgcaatat cgttcatttt
    12181 ccgaggatct tagtatgaat atggaagaaa ttgtggccct tagtgtaaag cataacgtct
    12241 cggatctaca cctgtgcagc gcctggcccg cacgatggcg cattcgcggg ctaatggaag
    12301 ctgcgccgtt tgatgcgccg gacgtcgaag agctactgcg ggagtggctg gatgacgatc
    12361 agcgggcaat attgctggaa aatggccagc tggattttgc cgtgtcgctg gcggaaaacc
    12421 agcgattgcg tggcagcgca ttcgcgcaac ggcatggcat ttcgctggcg ttacggctgt
    12481 taccttcgca ctgcccgcag ctcgaacagc ttggcgcacc aacggtattg ccggaattac
    12541 tcaagagcga gaatggcctg attctggtga cgggggcgac ggggagcggc aaatctacca
    12601 cgctggcggc gatggttggc tatctcaatc aacatgccga tgcgcatatt ctgacgctgg
    12661 aagatcctgt tgaatatatc tatgccagcc agcgatgttt gatccagcag cgggaaattg
    12721 gtttgcactg tatgacgttc gcatcgggat tgcgggccgc attgcgggaa gatcctgatg
    12781 tgattttgct cggagagctg cgtgacagcg agccaatccg tctggcactg acggcggcag
    12841 aaaccgggca tttggtgctg gcaacattac atacgcgtgg tgccgcgcag gcagttgagc
    12901 gactggtgga ttcatttccg gcgcaggaaa aagatcccgt acgtaatcaa ctggcaggta
    12961 gtttacgggc cgtgttgtta caaaagctgg aagtggataa acaggaagga cgcgtggcgc
    13021 tgtttgaatt attgattaac actcccgcgg tggggaattt gattcgcgaa gggaaaaccc
    13081 accagttacc gcatgttatt caaaccgggc agcaggtggg gatgataacg tttcagcaga
    13141 gttatcagca gcgggtgggg gaagggcgtt tgtgacgttg ccatgcccga tgcgcaagtt
    13201 tatagggcct ataaaggcaa taaatgtctg atgcgacgct aacgcgtctt atcagaccta
    13261 cagccgctgc cagatgtgtg ctggataagg cgttcacgcc gcatccggca agatggcggt
    13321 aacgactatc cgccaggctt ttagatcgcc ttaatatccc tgctcgaaat agctttcgag
    13381 aataataacc gcagaggctg agtcgacttt gcctttgttg agcgcccgat agccgccctg
    13441 ttcaaacaga ccggaacggg cttccacggt gctaagacgt tcgtcatgga gctttacttc
    13501 aacaccgaaa cgaccatgaa tacggttggc aaatttacgc gctctggcag tcaatggttg
    13561 ctcggtgccg tccatattca gcggcaaacc gacgatgatt tcgtccggct gccactcttt
    13621 cagtaaacgt tcgatgaggt tccagtccgg cgtaccgtcc tgtgctttaa ttgcaggcaa
    13681 agggcgagca gtgccggtaa tgcgttggcc gaccgctacg ccaatgcttt tggtgccgaa
    13741 gtcgaaggcg agtaaggttc cactcatcag gcgtgccctg ccacaccagg catggtgaga
    13801 atatccacac caatcagttt tgccgcctcg cgccagcggt cggcaatcgg cgttttgaac
    13861 agaatattca gatccgccgg ggccgttagc cacgcgttat cgagaatttc ttgttccagt
    13921 tgaccttttt cccaggaggc atagcccaga gccaccaata cgtcagacgg ttgtttatcg
    13981 gtgccgagcg tttccagcac atcgcgggaa gtggtcatca ccgtgttgtc tgaaatgcga
    14041 atgctggaag caaaattgga gggcggagta tgcaaaataa acccgcgatc ttcagccagt
    14101 gggccgccga gcataaccgg tttatccaga cggattgatt catcacgcgg ctccggcgtg
    14161 atcttcagct tttccagaat cccttcaatt ttgagatttt ccagcggctt gttgacgatg
    14221 atccccattg caccattggt attatgttcg caaatgtaga ccacggaacg acggaaaatc
    14281 ggatcctgga gagcaggcat ggcaataaga aagtgatgct gtaaattcat tgtcagaggt
    14341 tctgtttcct ggttcaaaaa agcaacagcg cccagtatgc gtggaaagaa gggcgctgtc
    14401 actcagagtc tcaacgagat ccttctcgct aaggtgggtt actgctgctg taaacgtgct
    14461 tcgatggcat ccattaacat tccggtgatc gacaccggaa actctgcttc aatctcacga
    14521 atacaggttg ggctggtgac gttaatttca gtcagacggt cgccgatgat atccagacca
    14581 acaaaaatca gccctttttc tttcagcgtc ggcccgatct gacgggcgat tttccagtca
    14641 ctttccgtca gcggccgagg ttcaccgcga ccaccggcag ccagattgcc acgggtttcg
    14701 cccccctgcg gaatacgcgc caggcagtac ggtaccggct cgccatccac caccagcacg
    14761 cgtttgtcgc catctttaat ggctggcagg taattttgcg ccatgcagta gcgagtgcca
    14821 tgctcagtca gggtttcggc aatcacgccg aggtttggat cgccttcttt cacgcggaaa
    14881 atcgacgcgc cgcccatacc gtccagcggc ttaagaatga tgtcgctgtg tttctcccag
    14941 aacgctttta gctgcgcttt attgcgcgta accagcgttt ctggcgttaa gtcagagaac
    15001 caggcggtaa acagtttctc gttacagtcg cgcaggctct gcggcttgtt aacgatcagc
    15061 gtccctttct cttcggcacg ttccagaata taggtcgcgt agataaactc ggtatcaaac
    15121 ggcgggtctt tacgcatcag gagcacatcg agatcggcca gcggcagatc ctgttcaccg
    15181 acgaacgaaa accactcttc gtagttctgc ttcacgttca gcgtgcgggt atgggcgcgg
    15241 gcttcgccat tgatcagata cagatcgccc atctccatat agtgaagttc gtaaccacga
    15301 cgctgtgctt ccagcaacat agcgaaactg gaatctttct tgatgttgat gtttgcgatg
    15361 gggtccatca cgatgccgag cttgatcatt attcttctcc gttagcccaa atcgccaaat
    15421 cgtacttgta gcgcggtaat ggcggtgagc gcagttgtct ctgtacgcaa aacgcgaggt
    15481 cccaacagga tatcagtaaa ttgatagcgg gcagtcatgg caatttcatc tgccgataaa
    15541 ccgccttccg ggccaatcag caggcggacg cgttcaaccg gtaacggcaa cgtattgatg
    15601 ctgttactgg cgcgcgggtg aagattcagt ttcagtcctt catcctgctc tgcacaccag
    15661 gcttccagat ccatcgctgg acggatttcc ggcacccggt tacgaccaca ctgctcacag
    15721 gcagcaattg caatcttctg ccactgctgg agcttcttgt tcagacgttc actatccagt
    15781 ttaacgccgc agcgctcaga aaaaagtggc gtaatgaggc ttacaccgag ttcgatcgat
    15841 ttctggatcg taaattccat tttttcacca cgcgacatca cctgaccgag gtgaatatgc
    15901 agcggagatt cgcgatcgtc gatcttgcct tccagcacct tcacttccac gctttttttg
    15961 ctggcgctgg taatttcggc gtcaaagacc tggttgctac cgtcaaacaa ttgcaacgcc
    16021 tgccccggcc ccatgcgcag tacgcgcccg atatggttgg cggcatcttc gcaaagcgcg
    16081 atgtgagaat ggctggtcag tggttcagga tgataaatgc gggggatacg catagttaaa
    16141 aatccgcgtc gtctccccac gcggttgtac gcgtggggta ggggttaaca aaaagagtcc
    16201 cgctagtgta ggttagctct ttcgcgcctg gcaagcgcgt tgcacatacg ggttatgatt
    16261 gccttgcacc ttcgcgatgc gttcatcgcg ctcgcactcc cagtcggtaa ccggatacat
    16321 cttgttccat gcgttgaaca gctgcgtttg ctggcgagag agtgtcaggt tgtattggtc
    16381 gcgcatatag aagtaggtgc gcgcaatggc accgcgtgca cgcgctggtg gttcggcagc
    16441 tttttctttg aaatcgacct tcatggcgca ttgaccgtac tggccttcgc cgccattcca
    16501 ctggctgtac ataaagttgc cgcgatcgcc attcacctca ccgactgacg gctgcaggtt
    16561 atgcatatcg ctttccatct tgcgatagac cggatcttta gcgcagtttt tacgtccacc
    16621 gtcctgccag cactggcgct ggtgaccgaa ctgccaggcg ggaacgacgt gttcccactc
    16681 tacgcggctg gctcggtttt catttttgcg cacctgatag ccgcacgatt gcagatcaac
    16741 aacgcctttt ttgccctgcc agttaatttt acatccgcaa taaaacgtac cgggcgcgtc
    16801 agcgtggact tttaccgccg cggctttcgc ctgagaaaaa ctattgatac cttcggccaa
    16861 cgccgggccg gaaaatgctg cgctcagtac caccgcagca atagacaaat aacggtacat
    16921 cacttactcc gtgttaaaac gagccagcaa cgtagcgaaa gttgttttgg tatgcaatca
    16981 gccagatcag gaaagttcct gatagttcag atggttattt tgcgaccagt tgttcgccgc
    17041 agtgaacaca gcgatagacg gcttcgccac gaactacgcg attatggcgg cgtacggtaa
    17101 gctgatgctc ctggcacttg cagcggtagg ggaaggtgtt gcgacgcacg gattgcagtt
    17161 cgaactgatg cgtacgacgg gcgggaacac ccagcacgtt ttccatcatc cacttccact
    17221 ctttgccatg tggtgctacg cgcccgaaat gtttccatac cagcaaatgt gccagttcgt
    17281 gcggcaccac ttcttcaata aaggcttcac tgttttccaa cagcaaaacg ggattgaggc
    17341 ggattttata gctttccagc caggctgttc cggcggaggt gccgcgctgg gtataagaga
    17401 gttttggctc cgggtagtta cgccccaatt tcaggttagc ctgggcgagt ttttcccgca
    17461 ggcgacgcat aacggcctgt tggatggcga tagggagacg ggatgttttc atagcggcag
    17521 aggatagagc gaagaaaaga tgactgcaag aggtggcttc ctccgcgatg ggaggaagct
    17581 tggggagatt aatcgtgagc gcctatttcg cgcagtttac gacctttcat cagattacgt
    17641 tcaatatgtt ccagcgaaac gtgtttggtt tccggtacca gccacaatgt cagcaggata
    17701 aacagtacgt tcagagccgc atacacccag aaggtgttgg cgttacccag tgtgttgagc
    17761 atggtcagga acgttgcgcc aacgatcatg ttggcaatcc agttggtggc ggtggagcag
    17821 gtgatgccaa aatcgcggcc tttcagcggc tgaatttcgg agcacagtac ccaaatcagc
    17881 ggaccggcac tcatggcaaa accgacaata aacatcagca gcatggcgat ggcgaaatac
    17941 tgcgctgacg gagagtgaat accgatatgc atcattgtac cgagtacgcc catgccagca
    18001 gccatcacca ggaagcccag cgttagcgtt ggtttacgtc cccagcggtc aacaaggccg
    18061 attgcgataa aggtggcaag tacgttggtc aggccgacaa tcactgtccc ccacatttgc
    18121 tcggtagtgt tggtataacc cgccagttcg aagattttcg gcgcgtaata catgatgacg
    18181 ttcatcccgg tgaattgctg cattacctgt aacagtacgc caaggaacac cgcgcggcgg
    18241 aagttgctat tctctttaaa cagcgcccag ccactctgtt taacctgcaa actttcacgg
    18301 atttcatcca gttcgcgttt cgcttccgcg ctggtgtcac gcaggcgtag cagcacgcgt
    18361 tcggcatcaa caaaacggcg tttggcggca aaccaacgtg ggctgtctgg caggaagaag
    18421 acaccaatca gcagcaaaat tgccgggatg ataatcacac ccagcatcca gcgccatgca
    18481 ccggtgtagc tgaaggcggt atcagaaaga taagcaccga ggatcccgat agtgatcatc
    18541 aactgataca tcgagatcat actgccacga attttttccg gcgcaatttc agagaggtac
    18601 agcggtgcgg tataagaggc cacacccacc gccagcccca gtagaacgcg ggaaagaatc
    18661 agtacttcaa cgtttggcgc agccgcagag aacagcgaac cggcaacaaa caaaattgcg
    18721 ccgatcatca ggctcttttt gcgcccgagt ttaaaggaga gccagccgct gcccaccgca
    18781 ccgactgccg caccgaacat catggagctt acgacccatt cttgcgtgtg cgaagtaatc
    18841 tggaattcat ctgcaataaa cggcagtgcg ccagcaatta caccgatatc caggccaaag
    18901 agtaatcccg ccagagcggc aaggaagcag acgaaaaacg tcattgcctt gtttgaccgc
    18961 ccctgttttt tagcgtcagg catgatgccc tccaatatgg ttatttttta ttgtgaatta
    19021 agataggtga gtacgacgta aaaagatgtg aagcaaatca cattagtgta atcgcttaca
    19081 ctaacattta tcttagttat ggtttaagtg catgaaaata attgagttat atcatcatag
    19141 attaaacgct gttatctgca attaagactt tactgaaaag aaatgtaaca actgtgaaaa
    19201 ctgaataata atatgaaaat attacaaata tttggctggt attattggtg taatcggttt
    19261 cagtagtgat gataatttgc gataaaacgt gttgaggaag aatgatgtta ttgtgcgggc
    19321 agctttttgc cggatgcggc gtgaatgcct atccaccgcg gtgaggtaaa agaaaaaggc
    19381 cagcgcgagg ctggcctttg aaagcaggtg aagaaagatt acttcagacc ggcagcatcg
    19441 cgcagcagct gcgctttgtc ggttttttcc cacgggaaat gttcacgacc aaagtgaccg
    19501 tatgctgcgg tttctttgta gatcgggtgc agcagatcca gcatctgaat cagaccgtat
    19561 gggcgcaggt cgaagaactc acgtaccagc agagtcagtt gttcagaagg cactttctca
    19621 gtaccgaaag tttctaccat gatggaggtc ggttcagcca cgccgattgc gtaggaaacc
    19681 tgaatttcac aacgatcggc caggccagca gcaacgatgt ttttcgcgac ataacgtgct
    19741 gcgtaggctg cggaacggtc cacttttgat ggatctttac cagagaatgc tccgccaccg
    19801 tgacgtgcca tgccgccgta ggtatcaacg ataattttac gaccagtcag accgcagtca
    19861 cccatcgggc caccgataac aaaacgaccg gtcgggttga tgaagaatgt ggtggcagaa
    19921 gtcagccatt cagcgggcag aattggcttg atgatctctt ccattaccgc ttcttgcagc
    19981 gatttctggt cgatctcttc agagtgctga gtggaaagca cgacagcatc aataccaacg
    20041 attttgccgt cgtcatactg gaaagtcacc tggcttttcg cgtccgggcg cagccacggc
    20101 agagtgccgt ttttacgcac ttcagcctga cgctgtacca gacggtgtgc ataggtgata
    20161 ggtgctggca tcagcacgtc ggtttcatta gttgcgtagc caaacatcag accctggtca
    20221 cccgcgccct gttccagcgg atcggcacgg tcaacgccct ggttgatgtc aggagactgt
    20281 ttgccgatag cgctcagaac cgcacaggag ttagcgtcaa agcccatgtc ggaatgcaca
    20341 tagccaattt cgcgaacggt gttacgggtg atctcttcga tgtctaccca ggcgctggtg
    20401 gtgatttcgc cgccaactaa aaccatgccg gtttttacgt aggtttcgca agcaacgcgt
    20461 gctttcggat cctgttcgag gatcgcgtct aaaacggcat cagagatttg gtcagcaatt
    20521 ttgtcaggat gcccttcaga gacggactcg gacgtaaaaa ggtgttttgc catatttaat
    20581 atcacctaaa gagaatttgg ttagctcaaa ctgttgtgtg gattttctgt ggtagcggat
    20641 cctaccacga ctctgcaggt taaaaacact ggcagtctga gtgttaatcg gtatggatgg
    20701 attaacatct ggatggctat tttaggtcaa ttcttcaccc gatttccact tttttttgaa
    20761 tcgtgtctca ttctgttaaa aacgtggctg gaaatttttc ctgacaatgc cggcattctg
    20821 cgtatttata ttttgcaatt ttctgccatt gtggggtata aaacgcagcg cgcggcttaa
    20881 ataaaaagca cacgacgttt ctttcgtgtt gccacttcca gccgggttga aatcagagtt
    20941 ttggcttgtg ggttcgtctt aacaggcggc cgtggaggtg atacgaaata atgaaccgta
    21001 gtctgctgct taacctgtct caccgttctg gtgaagattc gttccccgca ctctgcatct
    21061 ctgctttgca tacctgccga tgttataccc atctcggcgc ttctcaggat tcaagagctg
    21121 gttacagtta ctgaggactg aacaagggcg ctcttgtaaa aacaagagtt ttctcgtggt
    21181 ttcgccgaac tgtcacactt acgttcggtt atgtgcttaa taatgttatg aaaaagaaac
    21241 cggttgcgca gttggagcgt cagcattcac tgctggaaaa tccatgtgct tatgggttgt
    21301 tatcgcagtt ccaggctgcg atagtcgtta actgttttac acttaataaa ataatttgag
    21361 gttcgctatg tctgacgaca tgtctatggg tttgccttcg tcagcgggcg aacacggtgt
    21421 actacgctcc atgcaggagg ttgcaatgag ctcccaggaa gccagcaaga tgctgcgtac
    21481 ttacaatatt gcctggtggg gcaataacta ctatgacgtt aacgagctgg gccacatcag
    21541 cgtgtgcccg gacccggacg tcccggaagc tcgcgtcgat ctcgcgcagt tagtgaaaac
    21601 tcgtgaagca cagggtcagc gtctgcctgc actgttctgt ttcccacaga tcctgcagca
    21661 ccgtttgcgt tccattaacg ccgcgttcaa acgtgcgagg gaatcctacg gctataacgg
    21721 cgattacttc cttgtttatc cgatcaaagt taaccagcac cgccgcgtga ttgagtccct
    21781 gattcattcg ggcgaaccgc tgggtctgga agccggttcc aaagccgagt tgatggcagt
    21841 gctggcacat gctggcatga cccgtagcgt catcgtctgc aacggttata aagaccgcga
    21901 atatatccgc ctggcattaa ttggcgagaa gatggggcac aaggtctatc tggtcattga
    21961 gaagatgtca gaaatcgcca ttgtgctgga tgaagcagaa cgtctgaatg tcgttcctcg
    22021 tctgggcgtg cgtgcacgtc tggcttcgca gggctcgggt aaatggcagt cttccggcgg
    22081 ggaaaaatcg aagttcggcc tggctgcgac tcaggtactg caactggttg aaacgctgcg
    22141 tgaagctggg cgtctcgaca gcctgcaact actgcacttc cacctcggtt cgcagatggc
    22201 gaatattcgc gatatcgcca cgggcgttcg tgaatccgcg cgtttctatg tggaactgca
    22261 caagctgggc gtcaatattc agtgcttcga cgtcggcggc ggtctgggcg tggactatga
    22321 aggcacccgt tcgcagtctg actgctccgt aaactacggc ctcaatgaat atgccaacaa
    22381 catcatctgg gcgattggtg atgcgtgtga agaaaacggt ctgccgcatc cgacggtaat
    22441 caccgaatcg ggtcgtgcgg tgactgcgca tcacaccgtg ctggtgtcta atatcatcgg
    22501 cgtggaacgt aacgaataca cggtgccgac cgcgcctgca gaagatgcgc cgcgcgcgct
    22561 gcaaagcatg tgggaaacct ggcaggagat gcacgaaccg ggaactcgcc gttctctgcg
    22621 tgaatggtta cacgacagtc agatggatct gcacgacatt catatcggct actcttccgg
    22681 cacctttagc ctgcaagaac gtgcatgggc agaacaactc tatctgagca tgtgccatga
    22741 agtgcagaag caactggatc cgcaaaaccg tgcgcatcgt ccgataatcg acgaactgca
    22801 ggaacgtatg gcggacaaaa tgtacgtcaa tttctcgctg ttccagtcaa tgccggacgc
    22861 atgggggatc gaccagttgt tcccggttct gccgctggaa gggctggatc aagtgccgga
    22921 acgtcgcgct gtgctgctgg atattacctg tgactctgac ggtgctatcg accactatat
    22981 tgatggtgat ggtattgcca cgacaatgcc aatgccggag tacgatccag agaatccgcc
    23041 gatgctcggt ttctttatgg tcggcgcata tcaggagatc ctcggcaaca tgcacaacct
    23101 gttcggtgat accgaagcgg ttgacgtgtt cgtcttccct gacggtagtg tagaagtgga
    23161 actgtctgac gaaggcgata ccgttgcgga tatgctgcaa tatgtgcagc tcgatccgaa
    23221 aacgctgtta actcagttcc gcgatcaagt gaagaaaacc gatcttgatg ctgaactgca
    23281 acaacagttc cttgaagagt tcgaggcagg tttgtacggt tatacttatc tggaagatga
    23341 gtaagtccgt attacttgaa tccgcttaat ttagcggtga taatccgcca caatttattg
    23401 tgacaaatcc aacccttcct cgtcgggcct aacgacgcgg aagggttttt ttatatcgac
    23461 tttgtaatag gagtccatcc atgagcacct taggtaatca atacgataac tcactggttt
    23521 ccaacgcctt tggtttttta cgcctgccga tgaacttcca gccgtatgac agcgatgctg
    23581 actgggtgat tactggtgtg ccgttcgata tggccacttc tggtcgtgcg gggggacgcc
    23641 acggtccggc agcgatccgt caggtttcga cgaatcttgc ctgggaacac aatcgcttcc
    23701 cgtggaattt cgacatgcgt gagcgcctga acgtcgtgga ctgcggcgat ctggtatatg
    23761 cctttggcga tgcccgtgag atgagcgaaa aactgcaggc acacgccgag aagctgctgg
    23821 ctgccggtaa gcgtatgctc tctttcggtg gtgaccactt tgttacgctg ccgctgctgc
    23881 gtgctcatgc gaagcatttc ggcaaaatgg cgctggtaca ctttgacgcc cacaccgata
    23941 cctacgcgaa cggttgtgaa tttgaccacg gcaccatgtt ctataccgcg ccgaaagaag
    24001 gtctgatcga cccgaatcat tccgtgcaga ttggtattcg taccgagttt gataaagaca
    24061 acggttttac cgtgctggac gcctgccagg tgaacgatcg cagcgtggat gacgttatcg
    24121 cccaagtgaa acagattgtg ggtgatatgc cggtttacct gacctttgat atcgactgcc
    24181 tggatcctgc tttcgcgccg ggaaccggta cgccagtgat tggcggcctg acctccgatc
    24241 gcgccattaa actggtacgc ggcctgaaag atctcaacat tgttgggatg gacgtagtgg
    24301 aagtggctcc ggcatacgat cagtcggaaa tcaccgctct ggctgcggcg acgctggcgc
    24361 tggagatgct gtatattcag gcggcgaaaa agggcgagta agcaccagat gcgatgcgca
    24421 cgggtaaaac gtgccattaa tgtcggatgc ggcgtgaacg ccttatccga cctacgttcg
    24481 gcacccgtag gccggataag atgcgccagc atcgcatccg gcaatgcgca caaggtaaca
    24541 aatgtgccat taatgtcaga tgcggcgtga acgccttatc tgacctacgt tcgacaccac
    24601 caggctttac ttaatcccat ccgcgctcat gcgatcgcga atatgctggg cgcgttcggc
    24661 ggatgccgga tggtcgtcaa acattgagct ttggcggcct tcttccagtt tcgccagttt
    24721 ttcaaagctg gtggcaagac ctgccgggct gatgccgcgt tggcgcagaa gatcgtaaga
    24781 ataatcatcg gcttctgctt cctggcgctg ggagaattgc gaattgacta atttctcgcc
    24841 cagatcacca agttgtgatt gagataaact gccgacaatc ccgcccgcag aggccgcagc
    24901 tactcgcacg gcatttgtac caagcgccac ctgcatccct ttcttcacat ggcctaacgc
    24961 cacgtgcccc atctcgtgac cgatcaccgc ttcgacttcg ttatccgtca tcatatccat
    25021 cagcccgcta tagacgcgga tacagccgtt agccattgca aaggcgttca catccttcgc
    25081 catatacact ttgtaattca ccggctgacc gttgatattg ttgcctagcg cattggcaat
    25141 agttgtcaga cgtttagcgt attcgctatt ggctggcgca atcgtcgcct tgctgtccat
    25201 ctcctgacat gcctgatcgc tcagggtttt cacctgcgca tcactcaaac tgtaagcctg
    25261 aaaagcttcc gctcctgatg agagcagtcc gttggagtcc atattctggc aaccagtcag
    25321 taccgttgcc acgctcattg ctaccaataa ggcgcgaatt ttcatgtttt ctcttccgca
    25381 caaggtcagg attattctaa aaatgcgccg tttgcaggtg aatcgacgct cagtctcagt
    25441 ataaggaaaa gcgcagcgga cgggcgagta gattgcgcaa catgcgagca tgatccagag
    25501 atttctgaag cggcaaaagg atgttccatg tacatgacgc gcggcttgcg gtaaattgtt
    25561 ggcaaatttt ccggcgtagc ccaaaacgcg ctgtcgtcaa gtcgttaagg gcgtgccctt
    25621 catcatccga tctggagtca aaatgtcctc acgtaaagag cttgccaatg ctattcgtgc
    25681 gctgagcatg gacgcagtac agaaagccaa atccggtcac ccgggtgccc ctatgggtat
    25741 ggctgacatt gccgaagtcc tgtggcgtga tttcctgaaa cacaacccgc agaatccgtc
    25801 ctgggctgac cgtgaccgct tcgtgctgtc caacggccac ggctccatgc tgatctacag
    25861 cctgctgcac ctcaccggtt acgatctgcc gatggaagaa ctgaaaaact tccgtcagct
    25921 gcactctaaa actccgggcc acccggaagt gggttacacc gctggtgtgg aaaccaccac
    25981 cggtccgctg ggtcagggta ttgccaacgc agtcggtatg gcgattgcag aaaaaacgct
    26041 ggcggcgcag tttaaccgtc cgggccacga cattgtcgac cactacacct acgccttcat
    26101 gggcgacggc tgcatgatgg aaggcatctc ccacgaagtt tgctctctgg cgggtacgct
    26161 gaagctgggt aaactgattg cgttctacga tgacaacggt atctctattg atggtcacgt
    26221 tgaaggctgg ttcaccgacg acaccgcaat gcgtttcgaa gcttacggct ggcacgttat
    26281 tcgcgacatc gacggtcatg acgcggcatc catcaaacgc gcagtagaag aagcgcgcgc
    26341 agtgactgac aaaccgtccc tgctgatgtg caaaaccatc atcggtttcg gttccccgaa
    26401 caaagccggt actcacgact cccacggtgc gccgctgggc gacgctgaaa ttgccctgac
    26461 ccgcgaacag ctgggctgga aatatgcacc gttcgaaatc ccgtctgaaa tctatgctca
    26521 gtgggatgcg aaagaagcag gccaggcgaa agaatccgca tggaacgaga aattcgctgc
    26581 ttacgcgaaa gcttatccgc aggaagccgc tgaatttacc cgccgtatga aaggcgaaat
    26641 gccgtctgac ttcgacgcga aagcaaaaga gttcattgct aaactgcagg ctaacccggc
    26701 gaaaatcgcc agccgtaaag cgtctcagaa tgctatcgaa actttcggtc cgctgttgcc
    26761 ggaattcctc ggcggttctg ctgacctggc accgtctaac ctgaccctgt ggtctggttc
    26821 taaagcaatc aacgaagatg ctgcgggtaa ctacatccac tacggtgttc gcgagttcgg
    26881 tatgaccgcg attgctaacg gtatctccct gcacggtggt ttcctgccgt acacctccac
    26941 cttcctgatg ttcgtggaat acgcacgtaa cgccgtacgt atggctgcgc tgatgaaaca
    27001 gcgtcaggtg atggtttaca cccacgactc catcggtctg ggcgaagatg gcccgactca
    27061 ccagccggta gagcaggtcg cttctctgcg cgtaaccccg aacatgtcta catggcgtcc
    27121 gtgtgaccag gttgaatccg cggtcgcgtg gaaatacggt gttgagcgtc aggacggccc
    27181 gaccgcactg atcctctccc gtcagaacct ggcgcagcag gaacgaactg aagagcaact
    27241 ggcaaacatc gcgcgcggtg gttatgtgct gaaagactgc gccggtcagc cggaactgat
    27301 tttcatcgct accggttcag aagttgaact ggctgttgct gcctacgaaa aactgactgc
    27361 cgaaggcgtg aaagcgcgcg tggtgtccat gccgtctacc gacgcatttg acaagcagga
    27421 tgctgcttac cgtgaatccg tactgccgaa agcggttact gcacgcgttg cggtagaagc
    27481 gggtattgct gactactggt acaagtatgt tggcctgaat ggcgctatca tcggtatgac
    27541 caccttcggt gagtcagctc cggcagagtt gctgttcaaa gagttcggct tcaccgtcga
    27601 caacgtcgtt gcgaaagcaa aagaactgct gtaattagca tttcgggtaa aaaggtcgct
    27661 tcggcgacct tttttattac cttgatatgt ccgtttgcgg acaagcaata gataaagcgt
    27721 gttgcagatc acaaatattt atatgcaata aatatcaatt atgtaatatg catcacgata
    27781 tgcgtattga catttgttgt tatatctata actcaatgtt atataagaaa ttaataattc
    27841 actgttttca aaacaccggt ttccctgctc aattgctttc attaaaccgc acgagtattt
    27901 tatttttacc gccggacggt accctaaaaa taaaataagg ataatttatg cggcttagtg
    27961 actattttcc agaatcatca atctcagtta tacattcagc aaaagattgg caggaagcta
    28021 tcgatttctc gatggtatca ttgctggata aaaactatat cagcgagaat tacattcagg
    28081 caattaaaga ttccaccatt aacaatggcc cttattatat tctcgcacca ggcgtggcaa
    28141 tgcctcatgc gcgaccggaa tgtggggcgc ttaaaaccgg gatgtctttg acattacttg
    28201 aacaaggtgt ttattttccg gggaatgacg aaccaattaa attactcatc ggactctctg
    28261 ctgccgatgc cgattcgcac attggcgcta ttcaggcgtt aagtgaatta ctgtgcgaag
    28321 aagaaatact cgaacaactc ttaacagcat caccagaaaa acaattagcg gacattatca
    28381 gccgcggata attactctct cctctacagg ataatattat ggaaaacaag tctgctcgtg
    28441 caaaggtcca ggcttttggg ggctttttga ctgcaatggt catccccaat attggtgctt
    28501 ttattgcctg gggttttatt actgcgttat ttattcccac cggttggctg cctaacgaac
    28561 atttcgccaa aattgtcggc ccgatgatta cctatttatt gcccgtgatg attggttcta
    28621 caggtggtca tctggtcggc ggtaaacgcg gggcggtcat gggcggaata ggtactattg
    28681 gtgtgatcgt tggcgcagag atcccgatgt tccttggctc aatgatcatg gggccgctcg
    28741 gtgggttggt cataaaatat gtcgataagg cactggaaaa acgcatacct gccggttttg
    28801 agatggttat caataacttc tcattaggta tcgcggggat gctcctttgt ctgctgggtt
    28861 ttgaagtgat cggcccggcg gtgttaattg ccaatacttt cgtcaaagag tgtatcgagg
    28921 cgctggtaca tgcgggttat ctgcctctgc tgtcagtcat caatgaaccg gcgaaagtgc
    28981 ttttccttaa taatgcgatc gatcagggcg tctattatcc gctgggaatg caacaggctt
    29041 cggttaacgg taaatccatc ttctttatgg tgacctctaa cccaggtccg ggcctggggc
    29101 tgctgctggc gtttaccttg tttggtaaag ggatgagtaa acgttctgcg cccggggcga
    29161 tgattattca cttcctcggt gggatccacg aactgtattt cccatatgtg ctgatgaagc
    29221 cgctgactat tattgccatg attgcgggcg gtatgtctgg tacctggatg tttaacttac
    29281 tggacggtgg tctggtggct ggcccaagtc cggggtctat ctttgcttac ctggcactga
    29341 cgccgaaagg ctcgttcctg gcgacaattg ccggtgttac ggtaggtacc ctggtgtcct
    29401 ttgctattac ttcgctgata ctgaagatgg aaaaaacggt ggaaacggag agcgaagatg
    29461 agtttgctca gtcagccaat gcggttaagg cgatgaaaca agagggtgca ttctcgttaa
    29521 gcagggttaa gcgtatcgcc tttgtttgcg atgcggggat gggctccagt gcgatgggcg
    29581 cgaccacctt ccgtaaacgc ctggaaaaag cggggctggc aatagaagta aaacattacg
    29641 cgatagaaaa cgtgcctgcg gatgccgata tcgtcgtcac tcacgccagt ctggaagggc
    29701 gcgtgaaacg tgtgacggat aaaccgctga tattgattaa taactatatt ggcgatccaa
    29761 aactcgacac tttatttaat caattaaccg ccgaacataa acactgatta cagaggtaaa
    29821 aatgaaaacc aaagttgctg ctatttatgg caagcgggat gtccgtctgc gcgaatttga
    29881 actgccagaa attaccgata atgaactgtt agtgagtgta atttctgaca gcgtctgttt
    29941 atcgacctgg aaagcggcgt tactcggtag tgaacataaa cgcgtacccg acgatttaga
    30001 aaatcatccg gtcattaccg ggcatgaatg tgccggggtt attgtcgaag tgggtaaaaa
    30061 tctcactggc aaatataaaa aaggccagcg ttttgtattg caaccggcga tggggttacc
    30121 aagcggatat tcagcaggct acagctacga atatt
//
LOCUS       DAJVUN010000029        30070 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.029, whole genome shotgun sequence.
ACCESSION   DAJVUN010000029 DAJVUN010000000
VERSION     DAJVUN010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30070
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.029"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..543)
                     /gene="yecA"
                     /locus_tag="OQQ76_001073"
     CDS             complement(<1..543)
                     /gene="yecA"
                     /locus_tag="OQQ76_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YecA"
                     /protein_id="HCS1967655.1"
                     /translation="MKTGPLNESELEWLDDILTKYNTNHAILDVAELDDLLTAVLSSP
                     QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAARLNEFPEQFEPLFG
                     LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS
                     PEAFEESVDAIRLAALDLHAY"
     gene            complement(739..825)
                     /locus_tag="OQQ76_001074"
     tRNA            complement(739..825)
                     /locus_tag="OQQ76_001074"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(789..791),aa:Leu,seq:taa)
     gene            complement(838..911)
                     /locus_tag="OQQ76_001075"
     tRNA            complement(838..911)
                     /locus_tag="OQQ76_001075"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(877..879),aa:Cys,seq:gca)
     gene            complement(966..1041)
                     /locus_tag="OQQ76_001076"
     tRNA            complement(966..1041)
                     /locus_tag="OQQ76_001076"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1006..1008),aa:Gly,seq:gcc)
     gene            complement(1193..1741)
                     /gene="pgsA"
                     /locus_tag="OQQ76_001077"
     CDS             complement(1193..1741)
                     /gene="pgsA"
                     /locus_tag="OQQ76_001077"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HCS1967656.1"
                     /translation="MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAV
                     TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
                     IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
                     AVLTLWSMLQYLSAARADLLDQ"
     gene            complement(1798..3630)
                     /gene="uvrC"
                     /locus_tag="OQQ76_001078"
     CDS             complement(1798..3630)
                     /gene="uvrC"
                     /locus_tag="OQQ76_001078"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310678.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HCS1967657.1"
                     /translation="MSDQFDTKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
                     SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
                     PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
                     NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS
                     QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV
                     LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
                     ELAGRKINVQTKPRGDRARYLKLARTNAATALISKLSQQSTVHQRLTALASVLKLPEV
                     KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY
                     GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET
                     LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP
                     KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
     gene            complement(3627..4283)
                     /gene="uvrY"
                     /locus_tag="OQQ76_001079"
     CDS             complement(3627..4283)
                     /gene="uvrY"
                     /locus_tag="OQQ76_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HCS1967658.1"
                     /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR
                     TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL
                     SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
                     ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
                     "
     gene            4578..4754
                     /locus_tag="OQQ76_001080"
     CDS             4578..4754
                     /locus_tag="OQQ76_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967659.1"
                     /translation="MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTA
                     NFHCNMTRKINEYA"
     gene            4741..4965
                     /locus_tag="OQQ76_001081"
     CDS             4741..4965
                     /locus_tag="OQQ76_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2594 family protein"
                     /protein_id="HCS1967660.1"
                     /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK
                     MEKQLALIEDETQAAVFSKTVKQIKQAYRQ"
     gene            complement(5032..5754)
                     /gene="sdiA"
                     /locus_tag="OQQ76_001082"
     CDS             complement(5032..5754)
                     /gene="sdiA"
                     /locus_tag="OQQ76_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SdiA"
                     /protein_id="HCS1967661.1"
                     /translation="MQDTDFFSWRRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSL
                     CVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSE
                     AQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE
                     SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNM
                     QKKINAPNKTQVACYAAATGLI"
     gene            complement(5984..6736)
                     /gene="yecC"
                     /locus_tag="OQQ76_001083"
     CDS             complement(5984..6736)
                     /gene="yecC"
                     /locus_tag="OQQ76_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     YecC"
                     /protein_id="HCS1967662.1"
                     /translation="MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
                     LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV
                     LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA
                     MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD
                     LGRIVEQGAAKALFADPQQPRTRQFLEKFLLQ"
     gene            complement(6733..7401)
                     /gene="tcyL"
                     /locus_tag="OQQ76_001084"
     CDS             complement(6733..7401)
                     /gene="tcyL"
                     /locus_tag="OQQ76_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter permease"
                     /protein_id="HCS1967663.1"
                     /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR
                     LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAY
                     AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVVLPPLSNSFISLVKDT
                     SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE
                     REPK"
     gene            complement(7416..8402)
                     /gene="dcyD"
                     /locus_tag="OQQ76_001085"
     CDS             complement(7416..8402)
                     /gene="dcyD"
                     /locus_tag="OQQ76_001085"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HCS1967664.1"
                     /translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP
                     MAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP
                     IGTTAENYLTNGNRLLLNLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGG
                     SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV
                     TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA
                     RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV"
     gene            complement(8507..9307)
                     /gene="tcyJ"
                     /locus_tag="OQQ76_001086"
     CDS             complement(8507..9307)
                     /gene="tcyJ"
                     /locus_tag="OQQ76_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1967665.1"
                     /translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL
                     VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID
                     VVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTAADLKGKKVGVGLGTNY
                     EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA
                     FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK"
     gene            complement(9395..9946)
                     /gene="fliZ"
                     /locus_tag="OQQ76_001087"
     CDS             complement(9395..9946)
                     /gene="fliZ"
                     /locus_tag="OQQ76_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310687.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliZ"
                     /protein_id="HCS1967666.1"
                     /translation="MMVQHLKRRPLSRYLKDFKHSQAHCAHCRKLLDRITLVRDGKIV
                     NKIEISRLDTLLDENGWQVEQQSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM
                     SPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQ
                     HYQRQTCTGLVQKSSSLPASDIY"
     gene            complement(9992..10711)
                     /gene="fliA"
                     /locus_tag="OQQ76_001088"
                     /pseudo
     CDS             complement(9992..10711)
                     /gene="fliA"
                     /locus_tag="OQQ76_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310688.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
     gene            complement(11031..12737)
                     /locus_tag="OQQ76_001089"
     CDS             complement(11031..12737)
                     /locus_tag="OQQ76_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
                     /protein_id="HCS1967667.1"
                     /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD
                     AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQASTG
                     TNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNALAKDGSMKIQVGANDGQTITIDL
                     KKIDSDTLGLNGFNVNGKGTIANKAATVSDLTAAGATGTGPYAVTTNNTALSASDALS
                     RLKTGDTVTTTGSSAAIYTYDAAKGNFTTQATVADGDVVNFANTLKPAAGTTASGVYT
                     RSTGDVKFDVDANGDVTIGGKAAYLDATGNLSTNNAGIASSAKLSDLFASGSTLATTG
                     SIQLSGTTYNFGAAATSGVTYTKTVSADTVLSTVQSAATANTAVTGATIKYNTGIQSA
                     TASFGGANTNGAGNSNDTYTDADKELTTTASYTINYNVDKDTGTVTVASNGAGATGKF
                     AATVGAQAYVNSTGKLTTETTSAGTATKDPLAALDEAISSIDKFRSSLGAIQNRLDSA
                     VTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL
                     KG"
     gene            13003..14334
                     /gene="fliD"
                     /locus_tag="OQQ76_001090"
     CDS             13003..14334
                     /gene="fliD"
                     /locus_tag="OQQ76_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HCS1967668.1"
                     /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL
                     SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL
                     AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
                     KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNTISD
                     ALENITLNLHDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYTAVDAE
                     ADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVSSSSYKTLAQIGITTDPSDGKLELDA
                     DKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGVSKTLNK
                     LTKDYNAASDRIDAQVARYKKQFTQLDVLMTSLNSTSSYLTQQFENNSNSK"
     gene            14359..14769
                     /gene="fliS"
                     /locus_tag="OQQ76_001091"
     CDS             14359..14769
                     /gene="fliS"
                     /locus_tag="OQQ76_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HCS1967669.1"
                     /translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARL
                     FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR
                     NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV"
     gene            14769..15135
                     /gene="fliT"
                     /locus_tag="OQQ76_001092"
                     /pseudo
     CDS             14769..15135
                     /gene="fliT"
                     /locus_tag="OQQ76_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliT"
     gene            15213..16700
                     /gene="amyA"
                     /locus_tag="OQQ76_001093"
     CDS             15213..16700
                     /gene="amyA"
                     /locus_tag="OQQ76_001093"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1967670.1"
                     /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA
                     YKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKVQLLAAIDALKRNDIAVLLDVV
                     VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
                     SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
                     WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT
                     YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ
                     PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII
                     EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEYPGCVVVMSNGDDGEKTIHLG
                     ENYGNKTWRDFLGNRQESVITDEHGEATFFCNGGSVSVWVIEEVI"
     gene            complement(16734..17147)
                     /locus_tag="OQQ76_001094"
     CDS             complement(16734..17147)
                     /locus_tag="OQQ76_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310694.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1967671.1"
                     /translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ
                     RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERD
                     GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP"
     gene            17334..18539
                     /gene="yedE"
                     /locus_tag="OQQ76_001095"
     CDS             17334..18539
                     /gene="yedE"
                     /locus_tag="OQQ76_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HCS1967672.1"
                     /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE
                     FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK
                     LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW
                     FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ
                     PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV
                     QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS
                     TILAYYWDDFAPGLATDWDKINLLKTFGPMGGLLVTYLLLFTALMLIIGWEKRFFRRA
                     APQTAKEIA"
     gene            18536..18769
                     /gene="yedF"
                     /locus_tag="OQQ76_001096"
     CDS             18536..18769
                     /gene="yedF"
                     /locus_tag="OQQ76_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HCS1967673.1"
                     /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
                     QSINNIPLDARNHGYTVRDIQQDGPTIRYLIQK"
     gene            18876..19547
                     /locus_tag="OQQ76_001097"
     CDS             18876..19547
                     /locus_tag="OQQ76_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HCS1967674.1"
                     /translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKV
                     LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG
                     WFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFEHGDEAEGFLIVTAAADQGLVDIH
                     DRRPLVLSPEAAQEWMRQEIGGKEASEIATNGCVPANQFTWHPVSRAVGNVKNQGAEL
                     IQPVC"
     gene            complement(19587..20795)
                     /locus_tag="OQQ76_001098"
     CDS             complement(19587..20795)
                     /locus_tag="OQQ76_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1967675.1"
                     /translation="MKRLQAFKFQLRPGGQQEREMRRFAGACRFVFNRALARQNENHE
                     AGNKYIPYGKMASWLVEWKNATETQWLKDAPSQPLQQSLKDLERAYKNFFQNRAAFPR
                     FKKRGQNDVFRYPQGVKLDQENSRIFLPKLGWMRYRNSRQVTGVVKNVTVSQSCGKWY
                     ISIQTESEVSTPVHPSASMVGLDAGVAKLATLSDGTAFEPVNSFQKNQKKLARLQRQL
                     SRKVKFSNNWQKQKRKIQRLHSCIANIRRDYLHKVTTTVSKNHAMIVIEDLKVSNMSK
                     SAAGTISQPGHNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQVLAVPPAYTSQRC
                     ACCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAVLACGEMVQSGRPLKQ
                     EPTEMIQATA"
     gene            20803..21234
                     /gene="tnpA"
                     /locus_tag="OQQ76_001099"
                     /pseudo
     CDS             20803..21234
                     /gene="tnpA"
                     /locus_tag="OQQ76_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313209.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(21365..21541)
                     /locus_tag="OQQ76_001100"
     CDS             complement(21365..21541)
                     /locus_tag="OQQ76_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000082801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose-6'-phosphate glucosidase"
                     /protein_id="HCS1967676.1"
                     /translation="MSQQVAVEKLVVDAWEQRSYQHLWQAITLSKTVPSASVAKAILD
                     ELLEANKAYWPELR"
     gene            complement(21557..21826)
                     /locus_tag="OQQ76_001101"
     CDS             complement(21557..21826)
                     /locus_tag="OQQ76_001101"
                     /inference="COORDINATES: protein motif:HMM:NF023401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967677.1"
                     /translation="MEHREKQVFDACRAITAAGNSAAAKLEIDEHASYIVDLAAAIAF
                     NTQERMLLIVPNNGAIHNFDDEAMVEIPCLVGHNGPEPLVVGDIP"
     gene            complement(21741..22688)
                     /locus_tag="OQQ76_001102"
     CDS             complement(21741..22688)
                     /locus_tag="OQQ76_001102"
                     /inference="COORDINATES: protein motif:HMM:NF023401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
                     /protein_id="HCS1967678.1"
                     /translation="MTKFSVVVAGGGSTFTPGIVLMLLANQDRFPLRALKFYDNDGAR
                     QEVIAEACKVILKEKAPDIAFSYTTDPEVAFSDVDFVMAHIRVGKYPMRELDEKIPLR
                     HGVVGQETCGPGGIAYGMRSIGGVLELVDYMEKYSPNAWMLNYSNPAAIVAEATRRLR
                     PNAKILNICDMPIGIESRMAQIVGMQDRKQMRVRYYGLNHFGWWTSIEDLQGNDLMPQ
                     LRQYVSKHGYVPPQQDTHTEASWNDTYAKARDVQALDPDTLPNTYLKYYLFPDYVVQH
                     SNPEHTRANEVNGTSRETGFRCLPRHYSGRKFSGGQAGD"
     gene            complement(22688..24304)
                     /locus_tag="OQQ76_001103"
     CDS             complement(22688..24304)
                     /locus_tag="OQQ76_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312650.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HCS1967679.1"
                     /translation="MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTD
                     PNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFI
                     NAMGMTWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK
                     KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWV
                     YTFLERILIPTGLHHFIYGQFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGG
                     FALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFI
                     SPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLIDQVLPQNWIPMFSNHADMMLTQIAI
                     GLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQA
                     AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVII
                     GLHVSQLREQLDSLINSHQSAENVAITEAV"
     gene            24599..25315
                     /locus_tag="OQQ76_001104"
     CDS             24599..25315
                     /locus_tag="OQQ76_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1967680.1"
                     /translation="MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRK
                     AIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMP
                     APPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
                     IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMF
                     RNASEYQVEYHLRRLHPEKS"
     gene            complement(25312..26973)
                     /locus_tag="OQQ76_001105"
     CDS             complement(25312..26973)
                     /locus_tag="OQQ76_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HCS1967681.1"
                     /translation="MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVG
                     HFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI
                     IGGLVTAILHKLFDIPLPVVMGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY
                     AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHD
                     LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQ
                     EVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGD
                     ISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVP
                     GFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKS
                     GGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPP
                     ALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG"
     gene            complement(27169..27597)
                     /gene="ibpB"
                     /locus_tag="OQQ76_001106"
     CDS             complement(27169..27597)
                     /gene="ibpB"
                     /locus_tag="OQQ76_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709512.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpB"
                     /protein_id="HCS1967682.1"
                     /translation="MRNFDLSPLMRQWIGFDKLANALQNAGEGQSFPPYNIEKSDDNH
                     YRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAEN
                     MEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS"
     gene            complement(27709..28122)
                     /gene="ibpA"
                     /locus_tag="OQQ76_001107"
     CDS             complement(27709..28122)
                     /gene="ibpA"
                     /locus_tag="OQQ76_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpA"
                     /protein_id="HCS1967683.1"
                     /translation="MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDE
                     NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA
                     ENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN"
     misc_feature    complement(28116..28188)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01832"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ROSE (Repression Of Heat Shock gene Expression)
                     occurs in the 5'-region of heat shock genes and acts as an
                     RNA thermometer to modulate expression; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF01832"
     gene            28428..28760
                     /locus_tag="OQQ76_001108"
     CDS             28428..28760
                     /locus_tag="OQQ76_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418143.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1967684.1"
                     /translation="MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATM
                     IGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSRVEKSEANAQATNAVI
                     PPARMPDN"
     gene            complement(28762..29695)
                     /locus_tag="OQQ76_001109"
                     /pseudo
     CDS             complement(28762..29695)
                     /locus_tag="OQQ76_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312656.3"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3748 domain-containing protein"
     gene            29811..29999
                     /locus_tag="OQQ76_001110"
     CDS             29811..29999
                     /locus_tag="OQQ76_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967685.1"
                     /translation="MLTRKCIDPVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
BASE COUNT         7443 a         7877 c         7362 g         7388 t
ORIGIN      
        1 gtacgcatgt agatcaagcg ccgccagtcg aatggcatct acgctctctt caaacgcttc
       61 tggcgacatc ttttctaccc gctcgaagtt ttcctcagta ccgtgcagcg caatcgcctc
      121 cagcgctggt tttaacgaat cgggcaacgt agaccagtca gaaagtgcca cgccccgcat
      181 atagccaaag caccactcct caacaatcgt cagctcgctg ccatcaactt ctcgcaagcc
      241 gaataacggc tcaaactgct ccgggaattc gttcagacgc gctgcggtat cggccatatg
      301 ttgaaaagcc aggttcataa agcgcgtcat ctctttctct gacgcccagc gcggcacata
      361 gtcagcccca ccccacacgg caaccagcca ctgttccggt tcaatctctt gcggagaact
      421 caacaccgcc gtcaataaat cgtccagctc cgccacatca aggatggcgt ggttagtgtt
      481 gtatttggtc agaatatcgt ccagccattc caactcactt tcgtttaacg gtcccgtttt
      541 catacgcttt tccttgtgga tctcaactcg ccagcaccta tcttacatgc cggtccgtat
      601 cagagatact ttttgagtgg ctttgccggt gattaaaaat taaggagggt gtaacgacaa
      661 gttgcaggca caaaaaaacc acccgaaggt ggtttcacga cactgcttat tgctttgatt
      721 ttattcttat ctttcccatg gtacccggag cgggacttga acccgcacag cgcgaacgcc
      781 gagggatttt aaatcccttg tgtctaccga ttccaccatc cgggctcggg aagaaagtgg
      841 aggcgcgttc cggagtcgaa ccggactaga cggatttgca atccgctaca taaccgcttt
      901 gttaacgcgc caaattcttc aggcctttca gccagacatc cgcttgacgc cgatgtcttt
      961 taaactggag cgggaaacga gactcgaact cgcgaccccg accttggcaa ggtcgtgctc
     1021 taccaactga gctattcccg cattcattaa gcaatcagtt aatcacttga ttttattatc
     1081 gcctggcaat cagtgccgcc gttcgatgcg ttgcattcta cttacctggc gcgatgagtc
     1141 aacgatattt ttcaccactt ttgatcgttt gctgaaaatt acgccgaaac gatcactgat
     1201 caagcaaatc tgcacgcgca gcgctcaaat attgcaacat tgaccacaga gtcagtaccg
     1261 cagccacaaa gaaaagtgca ataccggcgt actcaaccca aatgttcgga cgccacagca
     1321 gccaggccaa cgccaccatc tgggcagtgg ttttcacttt cccaatccag gagacagcca
     1381 cgctactgcg tttacccaac tccgccatcc attcgcgtag cgcagaaata ataatttcac
     1441 gggcgatcat cgttgccgcc ggtagggtca cccaccagct gtgataatgc tcggttacca
     1501 gcaccatggc gatagccacg agaactttat ctgctacagg gtcaaggaaa gcaccaaacc
     1561 gggtactctg gttccagcgg cgtgccagaa aaccatcgaa ccagtcagtc accgccgcga
     1621 cgcagaaaat gagcgcggcg gcaaacggcg accaggtgac aggcagataa aagaccaata
     1681 caaagaatgg gataaggatg acacggaaca gtgtaagcaa cgtagggata ttaaattgca
     1741 taatgacggg taactatctg ttgtcagtaa gattacccct atgttgctac agagacatca
     1801 atgtttcaac gaccagaaga tcttttctgc cagaccttgc gaaatacccg gcacttttgc
     1861 aatttcctcg acgctggcgt tacgtaaacc ttgcaaaccg cccatatatt tcaacaacat
     1921 ttgccgacgt tttggcccga cgccttcaat ggtttccagg gaactggtat ttttgacctt
     1981 cgcccgtttt ttacggtgcc cgccaatcgc gtgatcatgt gattcatcgc gaatatgctg
     2041 gataacatgc agcgcgggtg aatctggcgg caaactaaat ccctcacctt ccggctcaaa
     2101 gaacagcgtt tccagtccag ccttacgatc tgctcctttg gcaacgccaa gtagcagcgg
     2161 atgattttta tcccatgaga catccagttc ggcgaagaca tttttcgcct gcgcaagctg
     2221 gcctttgccg ccgtcgataa ggatcacatc cgggatctta ctgtcgtcaa tggctttacc
     2281 ataacgccga cgcagcacct gattcatcgc cgcataatca tcgcccggcg tgatgcctgt
     2341 aatgttatag cgccgatact ccgcacgcag cgggccatta gcatcaaaca ccacacagga
     2401 agcgacggtt tgttcgccca tggtatggct gatgtcaaag cactccatcc gcttcacttc
     2461 cggcaatttc aacacgctgg caagcgcggt cagtcgctgg tgaacggtag attgctgcga
     2521 aagtttgctg attaaggccg tcgccgcatt ggtgcgcgcg agtttcagat aacgcgccct
     2581 atcgccgcga ggtttggttt gaacattaat cttgcgtccc gccagttctg aaagggaatc
     2641 ggcgagcagc gttttatcgc taagattaaa atcgagcagg atctcacccg gtaaggtgcg
     2701 catctggctg ccttgtaaat agaactgacc tacgaaggtt tctaccacct cgctcagttc
     2761 cgtaccgcca ggcactttcg ggaaatagct gcggctgccg agcactttgc cctgacgaat
     2821 gaacaatacg tggacacaag ccatgcccgc atcgaacgcc acaccaataa cgtcaaggtc
     2881 gtcgccggta ttggaaacaa actgtttttc ggtgacgcgt cgcaccgcct gaatttggtc
     2941 gcgaatacgt gccgcttctt caaactccag attctgactg gcagtttcca tacggctaat
     3001 gagttgcgta agcacctgat catctttgcc agacaaaaac aggcgcacat actcgacctg
     3061 ctgagcgtat tcttcttcac tcaccagtcc ttcaacgcac ggtcccagac agcgccctat
     3121 ctgatattgc agacacggac gcgagcgatt gcgataaaca ctattttcgc actggcgaat
     3181 ggggaaaatc ttttgcagta gcgccagagt ttcacgtacg gcatagccat tcgggaacgg
     3241 gccgaaatat tcacctttgg catgcttcgc accacgatgc atcgccagac gcgggtgggt
     3301 atcgccactc aggaagataa aaggataaga tttatcatcg cgtagcaaaa cgttgtaacg
     3361 cggctgatag agtttgatgt agttgtgttc cagcaacagc gcttcggttt ctgtatgagt
     3421 aaccgttaca tcaatttgct gaatctgggc gaccagcgct tcggttttgc gcgaagcgag
     3481 gttgctacgg aaatagctgg aaagccgttt tttcaggtct ttcgctttgc ctacatagat
     3541 aaccgtacca ccagcatcgt acatgcgata aacgcctggc tggctggtta cggtttttaa
     3601 aaacgctttt gtgtcaaact gatcactcac tgacttgata atgtctccgc attacacaga
     3661 ccatggcgaa ttgccaggtg agtcagctca acatcgccat gaatgtttag tttactgaac
     3721 atacgatagc ggtagctgtt caccgttttc ggactgagat tgagctgttc tgagatctca
     3781 ttgaccttct ggcccttggt gatcatcagc ataatctgca attcacgttc agacaaactg
     3841 gcaaatgggc tttctgtttt ttctggttcg atctggctta acgccatttg ttgagcgatg
     3901 tcagaagcaa tgtaacgctg ccctgaatag acagaacgaa tcgcactcac gacttcctgc
     3961 ggagccgcgc ctttgctgag gtagcccgca gcaccggcct gcatgacttt cgctggtaaa
     4021 gggttttctg tatgaacggt aagcatgatg attttgacat cagctgtgga acgcgcgatt
     4081 ttacgcgtcg cctcaagacc gccaatgccc ggcatactca tgtccattag caccacgtca
     4141 acggcatttg tccggcacca cttaacggcg tcttcaccgc acgatgcctc accgacgact
     4201 tttataccct ttatatcttc cagaatgcgt cgtatccctg cgcgcaccag ttcgtggtca
     4261 tcaacaagta gaacgttgat caaagaaata tctccagaaa tagggataac gctactgata
     4321 gttagtcatt cgtatattag cggtttttat tgcaactttg aaacgttaaa aatggtgggt
     4381 attcgatttt tctctcgttt ttgtcaattc gattgtccac agttatggtc acgcccgtca
     4441 ccaacggctt accagatcgt ttcacagtaa gccctacgat gaaatgtgac aaaaattgac
     4501 tttattcagc aaaaatgaaa atcagcccgc tgaatatgta acattaatta acccgaacaa
     4561 tacgggcaaa aacattcatg ataaaaatat ttattggtca ttatattaac gtattttata
     4621 gcactgccga tatcacgctc aaaaaacaac cactgctatt tttagcaaag cttatggtat
     4681 actccgccgc cttaacattt ttcaccgcaa attttcattg caacatgacg aggaaaataa
     4741 atgagtacgc ctgatttttc tactgccgag aataatcaag aactggcaaa tgaagtctcc
     4801 tgcctgaaag cgatgctgac gctgatgctg caggcgatgg gacaagctga cgcgggccgc
     4861 gtgatgttaa agatggaaaa acagcttgcg ctgatcgaag acgaaaccca ggctgcagta
     4921 ttttccaaaa cggttaagca aattaaacaa gcctaccgtc agtaatataa aaccggctga
     4981 gagcgtgcct ttcagccggt ttttgcatct ggcacgcaga aagaaaagcg atcaaattaa
     5041 gccagtagcg gccgcgtaac aggccacctg ggtcttattt ggtgcattga tttttttctg
     5101 catgtttttc tgatggaaat tgaccgtatt ctcagagatt gacaaaatca tcgctatctc
     5161 tgctgatgtc ttcccttccg ccgtccattt cagaatttct ttttcgcgct tgctgaaatt
     5221 catctctggc gtcatcacta tttcatcatt taaacgcatc agagccatca gactttcgcg
     5281 caccagtaac tgcattttta attgcagttc atcactaaga atgggtattt cgcgcgtgct
     5341 gcaacgggaa aaggacaaaa agcccagcgc ccgatttggc agcattaaat actgagtgac
     5401 accgcggcgt aaaccatgtg cgtgcgcggc ttcccataat ggctgtgctt cgctgaataa
     5461 gtcatcattc cacattaaat ggccctgact aaagttttca gggttcagca caggatcaat
     5521 tgcgagaaaa ttttttgcct gataataact aacccacgac tcagggtaat tggtgtagaa
     5581 agccacttta ggtcgcgtga atggtaccgg gtggcgaaca cataacgaat agtaatcgta
     5641 ctccagctgc tgagcctgaa gctctatttc atggtagacc tcttctgcgg cctccatcct
     5701 ctgaaaacgc aacagcatcg tgcgacgcca gctgaaaaaa tccgtatcct gcatagtaaa
     5761 ccgcaacgcc cctgagagtg agtatcattt ataatgataa ttcaaactat cacataaata
     5821 agatttatat ataatttata ttattcaggc aatgaattac ttttgcaagc catcgcattc
     5881 tcttatgtta ttaatgagtt atgctgattt gttaagcagt tttatcacgc ttgaaatggc
     5941 gtcccgcccc gacaggtgaa tcgtcggggc tgattttttc ttattattgc agcagaaact
     6001 tctcgaggaa ctgtcgggtg cgaggctgct ggggatcggc aaataacgct tttgctgccc
     6061 cctgctcgac tatccgcccc aggtccataa aaatcgcccg gtccgcaaca tcccgggcaa
     6121 agctcatttc gtgcgtcaca atcaccatcg tgcgcttttc ctgcgccagc tggcggattg
     6181 tgttcaggac ttcgcccacc agctctggat ccagcgctga cgttggctcg tcaaacaaaa
     6241 tcacctcagg acgcattgcc agcgcacgcg caatcgctac acgctgctgt tgaccgccag
     6301 acaaacgacg tggatagctg gtttctttac cggccagccc aactttcgcc agcagctcgc
     6361 gagcgcgcgc cgtggcctct tctttcggtt cgcctttgac gatcaccggc ccttcaataa
     6421 tgttttccag caccgtacga tgcggaaaca aattaaagtt ctggaagaca aacccgacgt
     6481 gctgacgcaa ctggcgaatc agcgattttt gctgacttaa tgaacgtgca gtatcaatag
     6541 tgatatcgcc aacggtgatc gttcccgctt ccggttgttc cagcagattt atgctgcgta
     6601 gcaacgtggt tttgccggaa ccactcggac cgataattgc caccacttcg ccaggcttta
     6661 cctcgaggtc gataccgtgc agcaccgtct gaccgtggaa ttttttcacc aggttcttaa
     6721 cttcaatggc actcatttgg gttctctctc ctggcgatta agttgattct caaaatggtt
     6781 ctgcaacgtc gataacacag tcgccatgat ccagtagatg agcgaagccg ccaggtacat
     6841 ggtgaacacc tccagcgtgc gcgaggtaat caactgcgcc tgacggaaca gctccggcac
     6901 ctggattgtc gcggccagcg acgtatcttt taccagactg ataaagctgt tcgacagcgg
     6961 cggcaacacc acccgcgccg cctgtggcaa aatcgcgcga cgcatggtct gccacggcgt
     7021 cataccaata ctggcagcgg cttcccactg acctttatca atagaagaaa tggcggcgcg
     7081 cagcgtttcg gcggcatagg cggcagtgtt cagcgacaga ccaatcattg ctgacggaat
     7141 gggatctaat tcgataccaa actgcggcag gccgtaatag atcataaaca gttgtgcgat
     7201 gagcggcgta ccacgaaaaa tagagatata aaaacgcgcc agccagcgca cgggccagat
     7261 tggcgacagg cgcatcagcg cgagaataaa cccgagtagt aagccaaaaa acatgccgcc
     7321 gatactgagt tgcagggtat acccagcccc tttcaacagg aacggcaagg aatcaataac
     7381 cagttgtata ctttcttgca tgagcgttcc tggagctaaa cgtggggatg ataggcgaac
     7441 agcgcaggcg cgccgccggt atgaataaac agaatcggcc cttcatcttt gaagcgtttc
     7501 tgactgatac cgtcaatcag ccccgccatc gcttttccgg tatacacagg atcaagcaga
     7561 atgccttcca gacgcgccag caatttcact gcttccatgc cttcgtcgtt cggcacgccg
     7621 tagccaggtg caaaatagtc atcccagagt aaaatttccg ctgatgcggt cagctccagt
     7681 tctttcgcaa tcgcctgttg taggttaacc actttcggca attgatcggc aacggaacgc
     7741 gacacggtca cgccaatcag ttcgctttca ggcatcaggt gttccagccc aacagccaat
     7801 ccggcgtgag ttccggcact gcccgatgcg accaccaccg acgaaatatt aaccgcccct
     7861 tcacactgtt gcgcgatttc cagcgcactc tccacataac ccagcgcgcc cagagcatta
     7921 gaaccgccaa ccggaatgac atacgggcga aagccttgtg cttcgactcg cgtcgccagc
     7981 tcttccagtt gggcattggg atcggtcagt gcgtcgcaca tttcaatctg ggtattgaac
     8041 agattcagca acaaacgatt gccgttggtt aaatagtttt ctgcggttgt gccaatagga
     8101 ttttccagca gcgccacgca gtgcaggccg agtttcgccg caactgcggc agtctgccgc
     8161 acatggttag actggatcgc gccggcagta atcagcgtat cggcaccttc gcgcagggca
     8221 tctgccgcga gaaattccag cttacgtaat ttattgccgc ccattgccat gggtgtgacg
     8281 tcatcccgtt tgatgaaaat ttcccgtcca agataatcag aaaagcgcgg cagatattcg
     8341 agcggcgttg gcgcgccgat aaactccagc cgtggaaaac gggttaaatt atgcagtggc
     8401 ataatagcct ccgatgtgtg ttgttgtgat tttcttatta tgcacgctga aaacgcgtaa
     8461 ataaaaaagg cgctagtgaa agcgcccttt tttgtcatta tgctgattat ttggtcacat
     8521 cagcaccaaa ccatttttcg gaaagggctt gcagagtgcc atctttttgc atttccgcaa
     8581 ttgcatcgtt cactgctttc agcaggtctt catttccttt acgcagcgcc acgccagact
     8641 cctgacggga gaatgcttca ccggttactg ccagcgtatc gttggttttc ttcaccagat
     8701 ccagcgccgc cagacggtca acgaggatcg catcgatacg gcctacgcgc agatcctgat
     8761 atttggtcgg gtcatcatca taggtacgca catcgacgcc ctgaacattc tgccgcagcc
     8821 actcttcata gttggtgccc agaccgacac ccactttttt gcctttcaga tcagcagccg
     8881 ttttaatggt gccttcgtta ccttttttca ccagcgcctg aataccagaa atggtgtacg
     8941 gggtagagaa atcgtatttt ttcttgcgct catcagaaat ggtgacctga ttaatcacca
     9001 catcaatacg tttagagtcc agcgacgcta gcataccgtc ccatttggtc ggttttagtg
     9061 acgcctcaac gccaagatgt tttgccagct gttgggcaaa ttccacttca aaaccggtta
     9121 atttgccgtc atccccctga aaactgaacg gcggataagt tccttccagc cctaccagta
     9181 gcgtaccgcg ctctttgact ttattaagca gaccttcatc tgcaaaactt ttaacgctca
     9241 tgcccgcaac cagcgccacg gccatcacac ccatcaatgc ctgacgtccc agatgtgcta
     9301 atttcatatt caccccgaat gttgttatgt ctgtttgcag tgtagagcca ttgtttgtaa
     9361 acacaaaaac aactccgcta catcttattc ttatttaata tatatcagaa gcaggcaggc
     9421 tggaggattt ctgcacaagt ccggtacacg tttgacgctg atagtgttga tacttccgta
     9481 atgcgatgcg gtaattgttg gtgctggtgg tgggcagcca cggggcgagg atttcatcaa
     9541 ggaaaccgtc ctgcagctga tcgagggaaa tattttgctc atgtagatga ttccccaaac
     9601 ggcgcaaacg aacgacatat tcacgcaccg tacctgggct catttcagtt tgctcaaaaa
     9661 gaaattgctt aaagccgata atatcgaaaa aatcactctg cgttttgcaa tgtaaatcac
     9721 cgcaaaatcg gcacaatgcc gcccatgact gttgttccac ttgccagcca ttttcatcaa
     9781 gcagcgtgtc caggcgggaa atctcgattt tattcactat tttgccgtcg cgaactaagg
     9841 taatgcgatc gagtaattta cggcaatgcg cgcaatgggc ctggctgtgt ttaaagtctt
     9901 taagatagcg gcttaatggc cgtcttttca ggtgctgcac catcattaag aactcctggt
     9961 agtcaaagtt aaagtgcggc atttactgac gttataactt acccagttta gtgcttaacc
    10021 gtttaatggc ctggctgtgt aactgactga cccgcgattc cccgacctcc agcaccgcgc
    10081 caatctcttt gagattcagc tcttcctagt aatagagggt taataccagt ttttcgcgct
    10141 ccggcaacgt ttcgatagct tccatcaccc gctggcgcag attactgtcc agcagttgtt
    10201 gtagcgggtt ttctcgctga tgatcatcag taaccagttc gatgctatcg ccgtgctctt
    10261 cgcgccactc atcgtaggag aaaagctggc tgttattggt gtcgagcaac atttggcgat
    10321 aatcggcaat atcgatccct aaacgttccg ctacctcagt ttccgtggcg ttgcggccaa
    10381 gttcctgctc cagttgccct attgcctgtg ccacttcacg cgcgttgcgt cgcacgctgc
    10441 gcggcaccca gtcacggctg cgaagttcat ccagcatagc gccacggata cgctgcactg
    10501 cgtaagttgt aaatgccgtt ccttgtaggg cgtcatagcg ttcgacggca ttaagtaacc
    10561 caatgccgcc cgcctgtagc agatcgtcaa gttccacgct cgcgggcagt cgaacctgca
    10621 ggcgcaatgc ttcgtgacgc accagcggga cataacgctg ccacagcgag tgtttatcca
    10681 ttacaccttc agcggtatag agtgaattca cgataaacag ccctgcgtta tatgagttat
    10741 cggcatgatt atccgtttct gcagggtttt taatcggacg attagtgggt gaaatgaggg
    10801 gttatttggg ggttaccggt aaattccatg cagaaaaaac cccgccggtg gcggggaagc
    10861 acgttgctga caaattgcgc tttatgttgc cggatgcggc gtaaacgcct tatccggcct
    10921 acaaaaatgt gcaaattcaa taaattgcaa ttcaccttgt agacctgata agtgcagcgc
    10981 atcaggcaat ttggcgttgc cgtcagtctc agttaatcag gttacgacga ttaacccttc
    11041 agcagagaca gaacctgctg cggtacctgg ttggcttttg ccagcacgga gttaccggcc
    11101 tgctggatga tctgcgcttt cgacatgttg gacacttcgg tcgcatagtc ggcgtcctga
    11161 atacgggact gcgcttcaga caggttggta gtggtgttgt tcaggttggt gactgcagaa
    11221 tccagacggt tctgaatagc acccagggat gaacggaatt tgtcgatgga gctgatagct
    11281 tcatccaggg cagccagagg atctttggtt gcagtgcctg cactggtggt ttcagtggtc
    11341 agtttgcctg tagagttaac ataagcctgt gccccaacag tagctgcaaa tttaccagtt
    11401 gcacctgcgc catttgaagc tacagttact gtaccggtat ccttatcgac gttgtagttg
    11461 atagtgtaag atgcggttgt ggtgagctct ttgtctgcat cagtataggt gtcattcgaa
    11521 ttaccagcac cattagtatt cgcaccaccg aaggacgccg ttgcagactg aatacctgta
    11581 ttatacttaa ttgtcgcacc agtaactgct gtgttagccg ttgcagcact ctgcactgtg
    11641 ctcagtacag tatcagcgct tacagttttg gtgtaggtta cgccagaagt tgccgctgca
    11701 ccaaagttat aagttgtgcc agacaactgg atagaaccag ttgtcgctaa ggtactaccg
    11761 ctagcaaaca gatcggacaa tttcgctgaa gatgcaatgc cggcgttgtt tgtagatagg
    11821 ttaccagtag cgtctaggta cgcggcttta ccaccgatgg tcacatcgcc attagcatct
    11881 acatcaaact tcacatcacc agtactacga gtataaacac ctgatgcagt agtgccagcc
    11941 gctggtttca gagtattcgc aaagttaaca acatcgccat ctgcaactgt tgcttgagtg
    12001 gtgaagttcc ctttagccgc atcataagta tagatcgcag cactcgagcc agtagtagta
    12061 actgtatctc cggttttcag gcgagacagt gcatcgctag cgctgagtgc tgtattgttt
    12121 gtggtcacag cataaggacc tgttcccgtt gcaccagcag cggtcagatc gctgactgta
    12181 gcagctttgt tcgcaatagt gcctttgcca ttcacgttaa aaccattcag ccccagcgta
    12241 tctgagtcaa ttttcttcag atcaatcgtg atagtctggc cgtcattcgc accaacctga
    12301 attttcattg aaccgtcttt cgccagtgcg ttcacgccgt tgaactgggt ctggccagat
    12361 acgcggtcaa tttcgtccag acgggatttg atttcgtcct gaatggagtc cagatccgaa
    12421 tcggagttag tcccggtaga agcctgaacc gtcagttcac gaatacgctg taagttgttg
    12481 ttgatttcgg acagcgcgcc ttcagtggtc tgcgcaacgg agataccgtc gttggcgtta
    12541 cgggccgcct gagtcaggcc tttaatatta gaagtaaaac ggttagcaat cgcctgacct
    12601 gcggcgtcat ccttcgcgct gttaatacgc aagccagaag acagacgctc gatagaactc
    12661 gacagcgcag actggttctt gttgatatta ttttgagtga tcagcgagag gctgttggta
    12721 ttaatgactt gtgccatgat tcgttatcct atattgcaag tcgttgatta cgtattgggt
    12781 ttccacccgt cggctcaatc gccgtcaacc ctgttatcgt ctgtcgtaaa acaaccttta
    12841 gaattttttt cacaaacagc cattttttgt tagtcgccga aatactcttt tctctgcccc
    12901 ttattcccgc tattaaaaaa aacaattaaa cgtaaacttt gcgcaattca ggccgataac
    12961 cccggtattc gttttacgtg tcgaaagata aaaggaaatc gcatggcaag tatttcatcg
    13021 ctgggagtcg ggtcaggtct ggatttaagt tcaatccttg atagcctcac cgccgcgcaa
    13081 aaagcgacgc taacccctat ttcaaatcag caatcgtcgt ttaccgctaa acttagcgcc
    13141 tacggtacgc tgaaaagcgc gctgacgact ttccagaccg ccaatactgc attgtctaaa
    13201 gccgatcttt tttccgccac cagcactacc agcagcacca ccgcgttcag tgccaccact
    13261 gcgggtaacg ccatcgccgg gaaatacacc atcagcgtca cccatctggc gcaggcgcaa
    13321 accctgacca cgcgcaccac cagagatgat acgaaaacgg cgatcgccac cagcgacagc
    13381 aaactcacca ttcaacaagg cggcgacaaa gatccgatta ccattgatat cagcgcggct
    13441 aactcatcgt taagcgggat ccgtgatgct atcaacaacg caaaagcggg cgtaagtgcg
    13501 agcatcatta acgtgggtaa cggtgaatat cgtctgtcag tcacatcaaa tgacaccggc
    13561 cttgataatg cgatgacact ctcggtcagc ggtgatgatg cgctacaaag ttttatgggc
    13621 tatgacgcca gtgccagcag caacaccatc agcgacgcgc tggaaaacat caccctgaac
    13681 ctgcacgatg tcaccacggg caaccagacg ctaaccatca ctcaggacac ctccaaagcg
    13741 caaacggcga ttaaagactg ggtgaatgcc tataactcgt taatagatac cttcagtagc
    13801 ctgaccaaat acaccgccgt agatgcggaa gctgatagcc agagttctag caatggcgca
    13861 ctgctcggcg actccacgct gcggacgatt cagacgcagt tgaagtcgat gctgagtaat
    13921 accgtcagtt cttccagcta taaaacgctg gcgcagattg gtatcacgac cgatcccagc
    13981 gatggcaaac tggaactgga tgccgacaaa ctcaccgctg cactgaaaaa agatgccagc
    14041 ggcgtaggtg cattgattgt tggcgatggt aaaaaaaccg gcatcacgac caccatcggc
    14101 agcaacctga ccagttggct ttcgacaacg ggcattatta aagccgctac cgatggcgtt
    14161 agtaagaccc tgaataagtt aactaaagac tacaacgccg ccagcgatcg cattgatgcg
    14221 caggtcgcgc gctacaaaaa acaatttacc caactggacg ttttaatgac ctcgttaaac
    14281 agcaccagca gctacttaac gcagcagttc gaaaacaaca gtaattccaa gtaatcatta
    14341 ttcatcggga gataggtcat gtacgcggca aaaggcaccc aggcctatgc acaaattggc
    14401 gtcgaaagcg ccgtaatgag cgccagccag cagcagctgg tcaccatgct atttgatgga
    14461 gtgctgagcg cactggttag agcgcgcctg tttatgcagg acaacaatca gcaaggcaaa
    14521 ggcgtctctt tgtcaaaagc gatcaacatc attgagaacg gactgcgggt gagtcttgat
    14581 gaagagagca aagacgaact aacccaaaac ttgattgctc tttatagcta tatggtcagg
    14641 cgcttgctgc aagccaattt acgcaacgat gtctccgcag tcgaagaagt ggaagcatta
    14701 atgcgcaata ttgccgatgc ctggaaagag tcgttactct ccccttcttt gattcaggac
    14761 ccagtctgat gaaccatgca ccgcatttgt atttcgcctg gcaacaactc gtcgaaaaaa
    14821 gccagctcat gttacgcctg gcaacggaag aacaatggga cgaactcatc gccagcgaaa
    14881 tggcgtatgt gaatgcggtg caggagtata gcacacctga ctgaagaggt tgccccgtcc
    14941 accacgatgc aggagcagct ccgcccgatg ctgcgcctga ttcccgacaa cgaaagcaag
    15001 gtaaagcagt tattacagat tcgtatggat gaactggcga aactggtcgg tcagtcatcg
    15061 gtgcaaaaat cggtgttaag tgcctatggc gatcagggcg gctttgtgct ggctccgcaa
    15121 gataacttct cgtgaatctt aacgagctaa tggttcgcga ataatccgat tacggctacg
    15181 cttctaatgt tccccttgaa tggagtcgaa gaatgcgtaa tcccacgctg ttacaatgtt
    15241 ttcactggta ttacccggaa ggcggtaagc tctggcctga actggccgag cgcgccgacg
    15301 gttttaatga tattggtatc aatatggtct ggttgccgcc cgcctataaa ggcgcatcgg
    15361 gcgggtattc ggtcggctac gactcctatg atttatttga tttaggcgag tttgatcaga
    15421 aaggcagcat ccctactaaa tatggcgata aagtacaatt gctggccgcc attgacgccc
    15481 tgaaacgtaa tgacattgcg gtgctgttgg acgtggtagt caaccacaaa atgggcgcgg
    15541 atgaaaaaga agctattcgc gtgcagcgtg taaatgctga cgaccgtacg caaattgatg
    15601 aagaaatcat tgagtgcgaa ggctggacgc gttacacctt ccccgcccgt gccgggcaat
    15661 actcacagtt tatctgggat ttcaaatgtt ttagcggtat cgaccatatc gaaaaccctg
    15721 atgaagatgg catatttaaa attgttaacg actacaccgg cgaaggctgg aacgatcagg
    15781 ttgatgatga attaggtaat ttcgattatc tgatgggcga gaatatcgat tttcgcaatc
    15841 atgccgtgac ggaagagatt aaatactggg cgcgctgggt gatggaacaa acgcaatgcg
    15901 acggttttcg tcttgatgcg gtcaaacata ttccggcgtg gttttataaa gagtggatcg
    15961 aacacgtaca ggaagttgcg ccaaagccgc tgtttattgt ggcggagtac tggtcgcatg
    16021 aagtcgataa actgcaaacg tatattgatc aggtggaagg caaaaccatg ctgttcgatg
    16081 cgccgctgca gatgaaattc catgaagcat cgcgcatggg gcgcgactac gacatgacgc
    16141 agattttcac gggtacatta gtggaagccg atcctttcca cgccgtgacg ctcgttgcca
    16201 atcacgacac ccaaccgttg caagccctcg aagcgccggt cgaaccgtgg tttaaaccgc
    16261 tggcgtatgc cttaatttta ttgcgggaaa atggcgttcc ttcggtattc tatccggacc
    16321 tctacggtgc gcattacgaa gatgtcggtg gtgacgggca aacctatccg atagatatgc
    16381 caataatcga acagcttgat gagttaattc tcgcccgtca gcgtttcgcc cacggtgtac
    16441 agacgttatt tttcgaccat ccgaactgca ttgcctttag ccgcagtggc accgacgaat
    16501 atcccggctg cgtggtggtc atgtcgaacg gggatgatgg cgaaaaaacc attcatctgg
    16561 gagagaatta cggcaataaa acctggcgtg attttctggg gaaccggcaa gagagcgtaa
    16621 taaccgacga acacggcgaa gcaaccttct tttgcaacgg cggcagcgtc agcgtgtggg
    16681 ttatcgaaga ggtgatttaa attcatcccc ggcggcaagc cggggagatt tcattacggc
    16741 agtggcgtcg gtaacggcgc tttatccagc gcggcggcac actctgccgt cgggcgatcc
    16801 acacgctcca tcgtcatacc atcgtactca atggtgttac cgtcacgctc aacctcgtac
    16861 agctcacgtt ttacggtaac gttagtgaga tcatcagaca tcaatgtcaa cttacccggc
    16921 acagcaatca cccgctgcca ctgacggcaa tccagagtat caccctcttt agtgacaatc
    16981 aggctgccta tcgcttccgg actgaccagc gcacgttgcg gccctttggt ctgccagtag
    17041 cccgccagcc agtccggcgc gggggttttc acgacattgt tatagttttc gacttcggca
    17101 cagcccgcca gcaacatgag cgcgcctgca attgcgagtt ttttcatcat tcgtcctgca
    17161 tgagaagaaa agaggattgt ggcattaaag ccctgatgtc gccagccttt ccaggttcag
    17221 agagaaattt gatctaacta ttatttttgt gaattattac cccgaaaata aatttgcatg
    17281 atgtatgatt cgcgactctt gtttcaaacc ttctgagttc agaggctaca ttcatgtcat
    17341 ggcagcaatt caaacacgcc tggttgatta aattctgggc acccatccct gcggtcatcg
    17401 cggcgggtat tctctccact tactattttg gcattactgg caccttttgg gctgtcacgg
    17461 gtgaatttac ccgttggggc ggccagctcc tgcagctgtt tggcgtccat gctgaagagt
    17521 ggggttattt taaaattatc catctggaag gatcgccatt aacccgcatc gacgggatga
    17581 tgatcctcgg catgtttggc ggctgctttg ccgcagcgct gtgggccaac aatgtcaaac
    17641 tgcgcatgcc acgcagccgt atccgcatta tgcaggccat tattggcggt attatcgctg
    17701 gttttggcgc gcgtctggca atgggctgta acctggcggc gttctttacc ggtattcctc
    17761 agttctcgct gcatgcctgg ttctttgcca tcgccactgc cattggttca tggtttggcg
    17821 cacgctttac cctgctgccc atcttccgta ttcccgtgaa aatgcagaaa gtttctgccg
    17881 cctcaccgct gacgcaaaaa ccggatcagg cgcggcgtcg ttttcgtctc gggatgctgg
    17941 tctttttcgg tatgctgggc tgggcgctgc tcacggcgat gaaccaacca aaactggggc
    18001 tggcaatgct gtttggcgtc ggctttggtt tactgattga acgtgcgcaa atctgcttta
    18061 cttcggcgtt ccgcgatatg tggatcaccg gacgtaccca tatggcgaaa gcaatcatta
    18121 tcggtatggc ggtgagtgcc atcgggatct tcagttacgt acagttaggc gttgaaccca
    18181 aaatcatgtg ggcgggacca aacgcggtaa ttggtggttt actgtttggt tttggcatcg
    18241 tgctggcagg cggctgcgaa accggctgga tgtaccgcgc ggtagaaggc caggtgcact
    18301 actggtgggt cggtctgggc aatgtgatcg gctcgacgat tctggcgtat tactgggatg
    18361 atttcgctcc ggggctggcc accgactggg acaaaatcaa cctgctgaaa acctttggcc
    18421 cgatgggtgg cctgctggtg acatatttgc tgttgtttac tgcgctgatg ttgattatcg
    18481 gctgggaaaa acgcttcttc cgccgtgcgg caccgcagac tgctaaggag atcgcatgaa
    18541 aaatatcgtt cctgattacc gccttgatat ggtgggtgaa ccctgccctt atccggcagt
    18601 agcaaccctt gaggcgatgc cgcagttaaa aaaaggggaa atcctggaag tggtgagcga
    18661 ctgtccacag tcgatcaata atattccact ggatgcgcgt aatcacggct atacggtgcg
    18721 ggatattcag caagacgggc cgaccattcg ttatttaatt cagaagtaat ccctcattcc
    18781 cgctgtggcc cacagcggga acatcgttgc ctctgacaca tagattttac ccgccccctc
    18841 tcctattctt ttcagtatga tctcaggagg tttctatgtg tggacgcttt gcccaatccc
    18901 aaacgcgtga agattacctt gcgcttctcg cggaagatat tgaacgcgat attccctacg
    18961 atcccgaacc cattggcaga tacaacgtcg cgccgggaac caaagttctt ctgctcagtg
    19021 aacgtgatga acaccttcat ctggatccgg ttttctgggg atatgctccc ggatggtggg
    19081 ataaaccgcc gctgattaac gcccgcgtag aaactgccgc aaccagtcgc atgtttaaac
    19141 cgctctggca acatggtcgg gcaatctgtt ttgccgatgg ctggtttgag tggaaaaaag
    19201 aaggcgacaa aaaacagcct ttttttatct atcgtgctga tggacaacct atttttatgg
    19261 ccgcgatagg tagcacacca tttgagcatg gtgacgaagc cgaaggattt ttaattgtca
    19321 ctgctgcagc agaccagggt ctggtagaca ttcatgaccg ccgcccgctg gttctgtcgc
    19381 cagaagctgc acaggaatgg atgcggcaag agattggcgg taaagaagca tcagaaattg
    19441 ctaccaacgg ctgtgtgcca gcaaaccagt tcacctggca cccggtatcg cgcgcggtag
    19501 gtaatgtcaa aaaccagggc gcggagttaa ttcaacctgt ttgttgacat cctccacgcc
    19561 ctgaaggacg aggctccctg ctacgttcag gctgtcgcct gaatcatttc ggtgggttcc
    19621 tgcttcaacg ggcggcctga ctgcaccatc tctccacagg caagaacggc gtgccccgcc
    19681 gctaaaatgt tacgagcgcc atttacatcg gcgttcgctg tatatccaca tacctggcat
    19741 ctgaatttac tttgtgacag gcggttttct ttcgctgtat gaccacagca cgcgcaacgc
    19801 tggcttgtgt acgctggcgg aacagcaagc acctgaccgc cacgccagag ctgcttgtac
    19861 tcaagctggc ggcgcatttc ataccagccc tgatccagta tcgaacggtt taaacctgat
    19921 tttgcccgga cattgtgccc cggctggctg atcgtacccg ctgctgactt tgacatgttg
    19981 ctgaccttca aatcctcaat gactatcatt gcgtggtttt tgctgacggt cgttgtgact
    20041 ttgtgaaggt agtccctgcg gatatttgcg atacaggaat gcagtcgctg tattttgcgt
    20101 ttctgcttct gccagttgtt gctgaatttg accttgcggc ttaactgtcg ctgaagtctc
    20161 gccagcttct tctggttttt ctgaaaactg tttacaggct caaaggctgt gccatctgac
    20221 agcgtggcga gtttagccac gccagcatcc agcccgacca ttgatgctga agggtgaacc
    20281 ggagttgata cttcactttc tgtctgaata ctgatgtacc acttaccgca ggactggctg
    20341 acagtgacat ttttcacaac acccgtgacc tgacggctgt tccggtagcg catccagccc
    20401 agtttcggca gaaaaatacg gctgttttcc tgatcgagct taacgccctg cgggtagcgg
    20461 aatacatcat tctgtccccg ctttttgaat cggggaaaag cagcccgatt ctggaagaag
    20521 tttttgtaag cccgctcaag gtctttcagt gactgttgca atggctgtga cggggcatct
    20581 ttaagccatt gcgtttcagt ggcatttttc cactcaacca gccaggaagc cattttcccg
    20641 taagggatgt atttattacc ggcctcatga ttctcattct gacgtgccag agcacgattg
    20701 aaaacgaaac gacatgcgcc tgcgaagcgc ctcatttcac gctcctgttg accaccgggt
    20761 cttaactgga atttaaatgc ttgtagtcgt ttcacaggcc aaatgatact ttggtctgtg
    20821 aaaaaagaaa ccgatatccg gcgtggaagg cattgtgttt tcctgatgca tgttcacctg
    20881 gtctttgtca ccaaataccg acgtcagatt tttgactatg acgcgacaga aaaactacgc
    20941 acttactttt caaatgtatg tgctgatttt gaagctgaac tggtttaaat ggatggcgaa
    21001 ccagatcacg tccatttgtt aattaactat cctcccaaac tggcgatatc cagtctggta
    21061 aacagcctca aaggcgtatc gggtaggtta ctgcgacgag atcgaccaga tattgcagtc
    21121 aggtattact acaaaggcgt tttgtggagt cctggctatt ttgccaatag ctgcggaggt
    21181 gcgccaatat ccgtcatccg ccaatacatt gaacaacagc aaacacctgg ttaggtggaa
    21241 aaccgcgcct tatatccccg ccctgaagga cggggtttta cggcgcaccg gataaatttg
    21301 gttatgcgcc gtcagccgtg ctaaagaata cggaccagca cccaacggat gccagtccac
    21361 acaattaacg taactctggc cagtacgctt tgttggcctc cagcaactca tccagaatag
    21421 ctttggcgac cgaggcgctc ggtaccgttt tcgataacgt aatcgcctgc cacaggtgct
    21481 gatatgaacg ctgttcccag gcgtccacga ccagtttttc caccgccact tgctgactca
    21541 ttaacccttt ctgaaactac gggatatcgc cgaccaccag tggttctggt ccgttgtgcc
    21601 cgaccagaca cgggatctcg accatcgctt catcatcaaa gttatggatt gccccgttgt
    21661 taggcacaat cagcaacatc cgctcctgag tgttgaaggc aattgccgcc gccagatcga
    21721 cgatgtatga cgcatgttcg tcaatctcca gcttggccgc cgctgaattt cctgccgctg
    21781 taatggcgcg gcaagcatcg aaaacctgtt tctcgcgatg ttccattcac ctcattcgcg
    21841 cgggtatgtt cagggttgga atgctgaaca acataatccg ggaagagata atatttcaga
    21901 taggtgttcg gcaatgtatc cgggtccagt gcctggacat cccgcgcttt tgcataggtg
    21961 tcgttccagc tcgcttcagt atgtgtatct tgctgcggtg gaacataacc gtgcttagag
    22021 acatattgcc gcagctgggg catcaggtcg ttgccctgca aatcttcaat tgatgtccac
    22081 cagccaaagt ggttcaggcc gtagtagcgc acgcgcatct gtttgcgatc ttgcatccca
    22141 acaatttgcg ccatccggct ttcaataccg attggcatgt cacagatgtt gaggattttc
    22201 gcattcgggc gcagacgacg cgtggcttct gcgacaattg ctgccgggtt ggagtagttg
    22261 agcatccagg catttggtga atatttttcc atataatcca ccagttccag gacgccgcca
    22321 atggaacgca tgccgtacgc tattccgccg ggtccgcaag tttcctgacc aacaacgccg
    22381 tggcgcagcg ggattttttc atccagttcg cgcatcgggt atttgccgac gcggatgtgc
    22441 gccatgacaa aatcaacgtc gctgaatgcc acttcaggat cggtggtgta actaaacgca
    22501 atgtccggcg ctttctcttt aaggatgact ttacaggctt cggcaatcac ttcctgccgc
    22561 gcaccatcgt tatcataaaa tttcagtgca cgaagcggga aacggtcctg attcgccagg
    22621 agcatcaaca cgatacctgg cgtaaaggtg cttccaccgc ctgcgacaac cactgagaat
    22681 ttggtcatta tactgcctcc gtaatggcaa cattttctgc tgattgatga gaattaatta
    22741 agctatcgag ctgttcacgc agctgggata catgcagacc aatgatcacc tgaatggcat
    22801 cgccactacg gaagacgccg tgcgctccca gctttttaaa gacttcgtca tccagcgttt
    22861 gtgacatgtc atgcagtgca atacgtaaac gcgtcgcgca attgttaatg ctggagatat
    22921 tgccgacccc gcccagggct tgcaggatac cggcagcctg atccagctct ttttttggct
    22981 ctgcagcggt ggtttggcct cgcgaggctt tgtattcggc ttttgagtag agtttcactt
    23041 ccgcatcttc acgtcccggc gtgcacatgt tgaattgcag aatcagtgtg cggaaaacca
    23101 cgaagtacag cagggtaaag cacaacccaa tggcgatttg ggtcagcatc atatccgcgt
    23161 ggttgctgaa catcgggatc cagttttgcg gtaaaacctg gtcaatcaga cctccgccca
    23221 tgttgcccac cacaccaaag agatacatca cggtcgacat tgaggccgcc agcacggcgt
    23281 gtaccgcaaa cagcaacggt gaaatgaaca ggaaggtaaa ttccagcggt tcggtaattc
    23341 ccaccagcat ggcggttaag gttgcgggaa tcagcaagcc cgccactttt acccgatttt
    23401 ccggtgcggc agtgaagtac atcgctaaag aaatgcccac ggcaccaaag atttttgagt
    23461 taccgtgcag ggcaaaaccg ccttccggga acaacgattt cagcggctcg gcgctcagac
    23521 tgaactcttg cagatgctgc gcccagtaca tctgaatgcc gccttcaaca gctgccggac
    23581 caaagataaa ctgtccgtag atgaagtggt gtaaaccggt tgggatcaga atacgttcga
    23641 ggaaggtgta aacccacacc ccaagtgcac ccgccgaacg caggaacgct tgcagagatt
    23701 caatccccat ttgtactttt ggccagccga gcaacgtcag ccaggcacag gggatcatca
    23761 ccaggaaggc gataatcacc acataagacg tcccctggaa aatgccgaga aaaaccggca
    23821 gttttttatc gaacagacgg ttatgcagcg ccgtcacaat gccggaaatg ataattgcgc
    23881 cgataatgct ggtatcgagg gttttaatcc cggccatcat tgtcagaccg ctacctgcca
    23941 ccgcgtcctg agtgaaatcg acgccgaagt agcttcccca ggtcattccc atcgcgttga
    24001 tgaaatagtt ccaggtcagg aaactcacca tcaccgccag acaagcacgc ccctgcgctt
    24061 gcttagcaag gccaatgggt aaaccgacag caaaaatcag cggcatatta cggaataccg
    24121 tccaaccgcc ctcttcaata atgtgtacga tttgcgcgaa taaactgttc ggatcggtca
    24181 gtgattcccc gacaaacatc gggttttgca gcaagatggc aagacccacc acaatcccgg
    24241 cgaagggaaa cagcagcact ggcgtgaaca tcgcgccgcc aaagcgttga atttgactga
    24301 gcatttccac atcctctttt ctcaattctg taagtaggaa gcctgattgg ttatgcggca
    24361 ggcctggagc gaggatagga agatgcgatc ggcagaacat gacgacccaa tgggattcgt
    24421 gatcgctttc atgcttttcg ttgggcggta gagatctacg ttttcgcgaa aaagtagaca
    24481 tctgtgagca ctggtacaca gcatcgaaca catctttaaa aaaagatgtt ttttcaatcg
    24541 attaagcaga acttgtgggc gcattacccg ggcttgcagg caaaaaagag atctagagat
    24601 gatctacaaa agcattgcgg agaggttaag aattcgactt aattccgcgg atttcacgct
    24661 aaacagcctt cttcccggtg aaaaaaagtt ggcggaagaa tttgcagtat cccggatgac
    24721 catccgtaaa gcgattgacc tgctggtagc gtgggggctg gtggtccgcc gccacggcag
    24781 cggcacttac ctggtgcgca aagatgtgct gcatcaaacc gccagcctga ccggactggt
    24841 ggaggtgtta aaacggcagg gaaaaacggt caccagccag gtgctgattt ttgaaatcat
    24901 gcctgcgcct ccggccattg ccagccagtt acggattcaa atcaacgagc agatctactt
    24961 ctcccgtcgc gttcgttttg tggaagggaa accgctgatg ctggaagaca gctatatgcc
    25021 ggttaaactg ttccgtaatc tttcgctgca acatctggaa gggtcgaagt ttgaatatat
    25081 tgaacaagag tgtgggattt tgattggcgg taattatgaa agcctgacgc cggtgctcgc
    25141 cgatagactg ctggcgcggc aaatgaaggt agcggaacac acgccactgc tgcggatcac
    25201 ctcgttgtca tatagcgaga gcggggagtt tttgaattat tcagtgatgt tcagaaatgc
    25261 cagcgaatac caggtggagt accatttacg gcgactccac ccggaaaaga gttaaccgat
    25321 actccagaag agcaccgcca gtaattgggg ggtgataatt cgcagaaaca tcactaacgg
    25381 atagacagtg gcgtaagaga gcgccgccgc accactggtt ggatgaagat tattagcaaa
    25441 cgccagcgcc ggaggatcgg tcatggaacc tgccagcatc ccgcacatgg tcaggtaatt
    25501 cattttggct aacatccgcg ccagaatgcc aacagtaatc agcggaacgg cggtgatcag
    25561 ggcaccataa ccaatccagc ttagcccttc gccattgacc agggtattca caaaatcccc
    25621 accagatttc agaccaacga ccgagaggaa cagcacgatc cccagctccc gcagcgcgag
    25681 gttggcactt ggcggcataa accagtacag cttgccgata ctgccgatac gcccgaggat
    25741 caacgccata atcagcggac cgcccgccag ccccagtttc aacgcggccg ggaacccagg
    25801 cacaaagacg ggaatagaac ctaacaatac gccaagcccg atgccaataa acactggcag
    25861 catctgaacc tgttgcagtt tttgctgcgc attccccagc acattggcaa cggcatcaat
    25921 tgcggacgga cgccccacca gattgaggat atcgccgaac tgcaggctga tatcgccact
    25981 ggcgaccagt tcgaccccgg cacggttcag gcgcgagata acaacgtcat agcgttcttt
    26041 aaagtgcagg tcgcgaatac gttttccgag cacgttttca ttggtgacca ccacacgctc
    26101 gacgcgcaaa tcagtgcctt tcgtggacag cgaagtatcg acctcctgac caatcaccag
    26161 ttgcgcatta tgtaaatccg ctggctgccc caccagatgc agcaaatcgc ccagttggat
    26221 aatggtatct ggcgaaggaa cttttagggt ttcttcgcgt ttcagacgcg agcagataat
    26281 tttgtcgccg ttgagaatcg gtacatcttt aatggctaaa tcatgcaggt tagggttctc
    26341 aacgcgaata ttgatagtct tgatcagcgc gccgccattg gtgcgtgaag actcgtgctg
    26401 ctgagcttct gtctcgacat tgacgcggaa aataacccgc aacatccaca tggtgaacaa
    26461 aatcccgcaa atgccgaatg gatacgccat cgcgtaactc atccccatct gatcgaccat
    26521 ttccattggt gtacccaggt cgcgcaagat ctgctgccct gcccccagcg ctggcgtatt
    26581 ggtaaccgca ccggagaaaa tccccatcac taccggcagt ggaatatcaa acagtttatg
    26641 caggatggcg gtaaccagac caccgatgat gacgattaga acagcaaaca ggttgaggcg
    26701 taatccggag acgcgcaatg aggcaaagaa gcccggccct acctgaatcc cgatggtata
    26761 aacgaacagg atcaggccaa attcctgaat aacatgcagc atatcgctac ttaatgtcat
    26821 ccccgcctga gaaacaaaat ggccgacgat gatcccacca aacagcacgc cgccaatacc
    26881 taatcctatg ccgcgaaatt tgacgttgcc gataaacaaa ccgacgactg ccaccaaagc
    26941 cagaatactg accgttaatg ctatatcact catcgtccat ttctcttgag ataacatttt
    27001 aattgctacg gattatggct gaatcggtga agcagatttg ccttatagcg cacattatca
    27061 cgggaaagaa cgtgccgaaa tatcttaaac agtcgaaatt taacgcattg ttgaagaaga
    27121 aagacaaaaa aagccccacc agaatggcgg ggcaaagaga atagctagtt agctatttaa
    27181 cgcgggacgt tcgctgatag cgatacgctg cgctgcgatg ggttcaggct cattacgaat
    27241 taaatcaata tgcagtaaac cgtttacgaa ggttgcgcca gagacttcca tattttcagc
    27301 cagcgtaaag ctcaggctaa atggctgatt cataagccct tgatgcagcc attttttctc
    27361 ttcttttggc tgctccggcg tgccttttac gctcaggcgc gtaccttcca gttgaatctc
    27421 taaatcttcc tgacggaaac ctgccagcgc aagggtaatg cggtagtggt tatcgtcgct
    27481 tttctcaatg ttgtacggcg ggaagctctg gccttcaccg gcgttttgca gtgcgttggc
    27541 cagtttgtca aaaccgatcc attgacgcat cagtggggat aaatcgaagt tacgcatagt
    27601 catttctcct tctaagaagc gagtaagtac ctgcaaatcc gaagattcgc atatgctccc
    27661 tgacggcgag catggagatg tcaggccgcg tcaggcggcc ttagggaatt agttgatttc
    27721 gatacggcgc ggttttttcg cttccggaat cacgcgttcg agatcgatat acagcaaacc
    27781 atttaccagg ttagccccac gaacatgaat gttctcagct aactggaatt tgcgttcaaa
    27841 gttgcgttca gcgatgccct ggtacagata ggtgcgctct ttttgttcgt cggcgtgagc
    27901 acctttcacc accagcagat tatcctgggc agtaatttcc agttcgctct cagcaaaacc
    27961 agccacagcg atagcaatgc ggtaatggtt ttcgtctacc agttcaacgt tatacggagg
    28021 gtagccgcca ttactctggc tctggttgtt ttctaagtgg ttaaacaaac ggtcaaatcc
    28081 aatagcagaa cggtaaagcg gggataaatc aaagttacgc ataatcaata gctcctgaaa
    28141 tcagcgagaa tgtaatacct tccacaatgg acaggtcagg tagccagaac acccatcagg
    28201 cgcgtcctca tcggctacga tgtaaaaatg ggtctggaaa tgaacttttc aagccttatc
    28261 agcggacttt tttttgcagt ttatggtcta ttgcatagac tgagggggca gcacgaaacg
    28321 ttaaagtgcg atagccgcca cagtgcgacg taatgatgat gttattttca gcaagggatc
    28381 gctataactc atcaggccaa cacccacgat caacagatga atttattatg ataagaaatg
    28441 tgttgttagc gttcatgata tgcagcggaa tgacattact cggaggatgc tccagcgtga
    28501 tgtcccatac cggagggaaa gaaggaacgt atcccggcac ccgcgccagc gcaaccatga
    28561 ttggcgacga tgaaaccaac tggggcacta agtcgctggc gattctcgat atgccgttta
    28621 ccgctgtgat ggacacgctt ttactgccgt gggatgtgtt ccgcaaagac agctcggtgc
    28681 gctcacgcgt tgaaaaaagc gaagccaacg cgcaagccac caatgcggtt attccaccgg
    28741 ccagaatgcc tgataactga tttagcgatc agtttcggtg atccacagct ggccgccttc
    28801 catccacgcc agccattgac catccggcga gaagaccacg gcgtccgcag aaggtggatt
    28861 ggcgtggttt tcggttaaat actcaacctc gccactttgc gcatgggcac aagcaattcg
    28921 attatccagc acaaagccca accattctcc tgacggatgc cagttaaatg cagactgaat
    28981 atccgttttg ttatgggtta actggcgcgg ctcgccgccc tgtggcgaga taagccacag
    29041 ttgcacaatg ccgttatcat cacgcattaa aaacgcgatt tgcgtaccct gcggattaca
    29101 gcgcacccag tggcgcgggc agggtggttt ccgttccact taacggcgca tcacctgccg
    29161 ctttccagcc agcttcatct tgcggtaact caacgataaa cagctccggc actttctcgc
    29221 cctttggcga aagtgtgtcg ccaataaacg ccagcgcgtg atttcctacc catccttctt
    29281 cataagcacg attgatttca tcgctgccag gctgcggcgt gggcgtggtt ttactcacca
    29341 gcacgcacca gtggctaccg ctgtattcac gcggatgctg cttttgtacg ttgaccgggc
    29401 caaacggcgc agcaacaccg acgtttcgca aatccagcgc cggatcgagt tcatgcatta
    29461 catggtcgtt ataggtaaag ctcacccttt caccgttcgg gctaaagaca tgcacatggc
    29521 tgccgccgcg cagcgctcct ggcgtatacg gcgcggtaat atccattgca tcgagattgc
    29581 tcaccttgcc gccttcagca atgactccgc gtcgatgatg gaaatcgtaa taccatgttt
    29641 catcaggatt ttccgggcca tggatgaaaa catatttctc tgacttcgga tgaaccacgg
    29701 cagcctgacg gctgcaaatt gaaaaccgcc cctgttcgtc ctgttgttgc cgcacgctcc
    29761 gcagaatatg tatgctctga ggacctgttt tattaaggac tcatcctctt atgttgaccc
    29821 gcaaatgtat agatcccgtt ctgctctctg ttggtgctga gaagctctca caacgtgaat
    29881 gggactggat gaagatgctc aaacccatgg acccaccacc tgcgatggtc gcggcctcca
    29941 tcctggagcg ccgtggcgac acagcagccc ttacccggct acaggatacc gggggttaat
    30001 ccgtcctcat gttgtccgct tttactcccc gcccgctgaa acgtctgttc acggccaacc
    30061 agtgctggac
//
LOCUS       DAJVUN010000030        29826 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.030, whole genome shotgun sequence.
ACCESSION   DAJVUN010000030 DAJVUN010000000
VERSION     DAJVUN010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29826
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.030"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..1846
                     /locus_tag="OQQ76_001111"
                     /pseudo
     CDS             1..1846
                     /locus_tag="OQQ76_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416105.4"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            1842..2390
                     /gene="dmsB"
                     /locus_tag="OQQ76_001112"
                     /pseudo
     CDS             1842..2390
                     /gene="dmsB"
                     /locus_tag="OQQ76_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
     gene            2392..3246
                     /locus_tag="OQQ76_001113"
     CDS             2392..3246
                     /locus_tag="OQQ76_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HCS1967686.1"
                     /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIV
                     RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL
                     VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS
                     DPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVP
                     DYASLQVWRVVLLCASLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM
                     TVGMAIAG"
     gene            3289..3903
                     /gene="dmsD"
                     /locus_tag="OQQ76_001114"
     CDS             3289..3903
                     /gene="dmsD"
                     /locus_tag="OQQ76_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707489.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat proofreading chaperone DmsD"
                     /protein_id="HCS1967687.1"
                     /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET
                     QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS
                     TLALRQWMREKGIQFEMKQYEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST
                     RFLDVFIEKAEHPFYRALGELSRLTLAQWQSQLLIPVAVKPLFR"
     gene            4062..5354
                     /gene="clcB"
                     /locus_tag="OQQ76_001115"
     CDS             4062..5354
                     /gene="clcB"
                     /locus_tag="OQQ76_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001296088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated ClC-type chloride channel ClcB"
                     /protein_id="HCS1967688.1"
                     /translation="MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWL
                     FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQ
                     TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWI
                     ACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDAL
                     LYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGG
                     LIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVF
                     TPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTEMATLLAATTHAPIMSTLMICEM
                     TGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS"
     gene            complement(5307..6002)
                     /gene="bioD"
                     /locus_tag="OQQ76_001116"
     CDS             complement(5307..6002)
                     /gene="bioD"
                     /locus_tag="OQQ76_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HCS1967689.1"
                     /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS
                     KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL
                     TDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA
                     NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA
                     MLRSVLAVDRVTV"
     gene            complement(6127..7347)
                     /gene="mlc"
                     /locus_tag="OQQ76_001117"
                     /gene_synonym="dgsA"
     CDS             complement(6127..7347)
                     /gene="mlc"
                     /locus_tag="OQQ76_001117"
                     /gene_synonym="dgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor Mlc"
                     /protein_id="HCS1967690.1"
                     /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP
                     ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR
                     DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE
                     NGIVHRMPFYEDVKEMPLGEALEQYTGVPVYIQHDISAWTMAEALFGASRGARDVIQV
                     VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILE
                     LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN
                     PQKILIGSPLSKAADILFPVISDSIRQQALPTYSQHISVESTQFSNQGTMAGAALVKD
                     AMYNGSLLIRLLQG"
     gene            complement(7482..8375)
                     /locus_tag="OQQ76_001118"
     CDS             complement(7482..8375)
                     /locus_tag="OQQ76_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1967691.1"
                     /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ
                     IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS
                     APFIRAVSDTLSLFRRDYPGVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH
                     AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHL
                     TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWP
                     KHHEQSPASRNFRIHLLNALR"
     gene            8482..9734
                     /locus_tag="OQQ76_001119"
                     /pseudo
     CDS             8482..9734
                     /locus_tag="OQQ76_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            10131..10445
                     /locus_tag="OQQ76_001120"
     CDS             10131..10445
                     /locus_tag="OQQ76_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416114.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid shock protein"
                     /protein_id="HCS1967692.1"
                     /translation="MKKQIEGMTMKKVLALVVAAAMGLSSAAFAAETATTTKAAPAKT
                     THHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHSHQQPAKPAAQP
                     AA"
     gene            10538..10621
                     /locus_tag="OQQ76_001121"
     CDS             10538..10621
                     /locus_tag="OQQ76_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967693.1"
                     /translation="MVGRYRFEFILIILILCALIAARFYLS"
     gene            10721..11542
                     /locus_tag="OQQ76_001122"
     CDS             10721..11542
                     /locus_tag="OQQ76_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HCS1967694.1"
                     /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR
                     VPVNDTAQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRF
                     VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
                     LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT
                     LPGDSGSPLMLHTNDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK"
     gene            complement(11581..11910)
                     /gene="mdtI"
                     /locus_tag="OQQ76_001123"
     CDS             complement(11581..11910)
                     /gene="mdtI"
                     /locus_tag="OQQ76_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtI"
                     /protein_id="HCS1967695.1"
                     /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA
                     VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG
                     MIMVKLA"
     gene            complement(11897..12262)
                     /gene="mdtJ"
                     /locus_tag="OQQ76_001124"
     CDS             complement(11897..12262)
                     /gene="mdtJ"
                     /locus_tag="OQQ76_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtJ"
                     /protein_id="HCS1967696.1"
                     /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS
                     YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI
                     KSGTRKARKPELEVNHGAV"
     gene            12674..13708
                     /gene="tqsA"
                     /locus_tag="OQQ76_001125"
     CDS             12674..13708
                     /gene="tqsA"
                     /locus_tag="OQQ76_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2 transporter TqsA"
                     /protein_id="HCS1967697.1"
                     /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA
                     VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM
                     TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLF
                     MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL
                     DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG
                     NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI
                     AVLLSDLNKE"
     gene            complement(13733..15121)
                     /gene="pntB"
                     /locus_tag="OQQ76_001126"
     CDS             complement(13733..15121)
                     /gene="pntB"
                     /locus_tag="OQQ76_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HCS1967698.1"
                     /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA
                     LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR
                     HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV
                     SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG
                     TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR
                     ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND
                     TVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD
                     AKASVDAILKAL"
     gene            complement(15132..16664)
                     /gene="pntA"
                     /locus_tag="OQQ76_001127"
     CDS             complement(15132..16664)
                     /gene="pntA"
                     /locus_tag="OQQ76_001127"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HCS1967699.1"
                     /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS
                     FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM
                     QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA
                     GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE
                     EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK
                     TGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL
                     LKLLCKEKDGNITVDFDDVVIRRVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE
                     EKCACSPWRKYALMALAIILFGWLASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH
                     TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR
                     KN"
     gene            17188..18132
                     /locus_tag="OQQ76_001128"
     CDS             17188..18132
                     /locus_tag="OQQ76_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1967700.1"
                     /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG
                     RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR
                     VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA
                     NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA
                     SPSSEVGRFFETQSLKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE
                     VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK"
     gene            18318..19700
                     /locus_tag="OQQ76_001129"
     CDS             18318..19700
                     /locus_tag="OQQ76_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1967701.1"
                     /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG
                     ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY
                     LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT
                     LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLVLGVPVWEQVKNTMLITLWVFIGVEGAV
                     VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM
                     MGPWGEIIIAASLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL
                     WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG
                     ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA
                     SVPATWMLVG"
     gene            19737..20459
                     /gene="folM"
                     /locus_tag="OQQ76_001130"
     CDS             19737..20459
                     /gene="folM"
                     /locus_tag="OQQ76_001130"
                     /EC_number="1.5.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydromonapterin reductase"
                     /protein_id="HCS1967702.1"
                     /translation="MGKAQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI
                     DGLIKAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKPGAPLADVL
                     ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALD
                     NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD
                     YLLTSCFVTGRSFPLDGGRHLR"
     gene            complement(20456..20791)
                     /locus_tag="OQQ76_001131"
     CDS             complement(20456..20791)
                     /locus_tag="OQQ76_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlpM family protein"
                     /protein_id="HCS1967703.1"
                     /translation="MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHY
                     IVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWV
                     LIICWIKLH"
     gene            20919..21530
                     /locus_tag="OQQ76_001132"
     CDS             20919..21530
                     /locus_tag="OQQ76_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416125.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HCS1967704.1"
                     /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE
                     NPDLVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGASLTPYKA
                     LHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYD
                     GLDRNVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE"
     gene            21534..22835
                     /gene="rstB"
                     /locus_tag="OQQ76_001133"
     CDS             21534..22835
                     /gene="rstB"
                     /locus_tag="OQQ76_001133"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RstB"
                     /protein_id="HCS1967705.1"
                     /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN
                     SLLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA
                     LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH
                     WQDMLKLEAAAQRFGDGHLYERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG
                     IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH
                     LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRY
                     CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA
                     IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA"
     gene            22911..23840
                     /gene="tus"
                     /locus_tag="OQQ76_001134"
     CDS             22911..23840
                     /gene="tus"
                     /locus_tag="OQQ76_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication terminus site-binding protein"
                     /protein_id="HCS1967706.1"
                     /translation="MARYDLVDRLNTTFRQMEQELAAFAAHLEQHKLLVARVFSLPEV
                     KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV
                     NNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRSLT
                     VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD
                     IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE
                     LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD"
     gene            complement(23837..25240)
                     /gene="fumC"
                     /locus_tag="OQQ76_001135"
     CDS             complement(23837..25240)
                     /gene="fumC"
                     /locus_tag="OQQ76_001135"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HCS1967707.1"
                     /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL
                     IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS
                     NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL
                     IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS
                     LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ
                     AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT
                     MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE
                     PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF
                     DSWVRPEQMVGSMKAGR"
     gene            complement(25383..27029)
                     /gene="fumB"
                     /locus_tag="OQQ76_001136"
     CDS             complement(25383..27029)
                     /gene="fumB"
                     /locus_tag="OQQ76_001136"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fumarate hydratase"
                     /protein_id="HCS1967708.1"
                     /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP
                     EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL
                     PTCQDTGTAIIVGKKGQRVWTGGCDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL
                     LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW
                     IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG
                     RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ
                     LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK"
     gene            27228..28403
                     /gene="manA"
                     /locus_tag="OQQ76_001137"
     CDS             27228..28403
                     /gene="manA"
                     /locus_tag="OQQ76_001137"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416130.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HCS1967709.1"
                     /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS
                     SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK
                     RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP
                     VAGAHPAIAHFLQQPNAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR
                     LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG
                     LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT
                     ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL"
     gene            28504..>29826
                     /locus_tag="OQQ76_001138"
     CDS             28504..>29826
                     /locus_tag="OQQ76_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HCS1967710.1"
                     /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL
                     KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP
                     LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
                     PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK
                     TDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL
                     DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY
                     QEKVTEAFFSALPLMLKGDPVITVAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA
                     QEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEG"
BASE COUNT         7231 a         7659 c         7391 g         7545 t
ORIGIN      
        1 tggataccat cagtgataat cttcggcgga tcctgaaaga ttacggcaat gaggctgtac
       61 atgtcctgta cggaacaggc gtagatggcg gaaacatcac caactcaaac gtcccgtacc
      121 gtctgatgaa ctcttgcggt ggttttctca gtcgctatgg cagctacagt actgcacaga
      181 tcagtgccgc aatgagttat atgttcggtg ccaatgatgg caacagcccg gatgatatcg
      241 ccaatacgaa actggtcgtt atgttcggaa ataacccggc agaaacgcgg atgagcggcg
      301 gtggtgtcac ttactacgtc gagcaagccc gcgaacgttc aaacgcacgc atgatcgtca
      361 tcgatccacg ttataacgac actgctgccg ggcgtgaaga tgaatggctg cccattcgcc
      421 ctggcaccga tggcgcactg gcctgtgcga ttgcctgggt actgattact gaaaacatgg
      481 tcgatcagcc atttctcgac aaatattgtg ttggttacga tgaaaaaacg ctgctcgcca
      541 acgcaccacg taacgcgcat tataaagcct atattctggg cgaagggcct gacggcatag
      601 ctaaaacgcc ggaatgggca gcaaaaatca ccagcatccc ggcagaaaaa attatccagt
      661 tggcgcgaga gatcggttca gcaaaacctg cttatatttg tcagggttgg gggcacaacg
      721 acattccaac ggcgagcaaa cgtcccgcgc tattgccatg ctttccgttc tcaccggtaa
      781 cgttggcata aacggcggca actcaggtgt acgcgaaggt agctgggatc tgggggtaga
      841 atggttcccg atgcttgaga atcctgttaa aacgcagatt tccgtcttta catggacaga
      901 tgccatcgac catggtacgg aaatgaccgc gacccgtgat ggtgttcgtg gaaaagaaaa
      961 actggatgtc cccatcaagt ttttatggtg ctacgccagt aacacattga tcaatcaaca
     1021 tggcgacatc aatcacaccc atgaggtgct tcaggatgac agcaagtgcg agatgattgt
     1081 tggcattgac cacttcatga cggcctcggc taagtattac gatatcctgt tgcccgacct
     1141 gatgccaaca gagcaagaag accttatctc tcatgaatct gcagggaata tgggctatgt
     1201 gatcctcgcc caacccgcaa cctcagcaaa atttgaacgc aaacccatct actggatgct
     1261 gagtgaagtc gccaaacgct taggaccaga cgtttatcaa acctttactg aaggtcgcag
     1321 tcagcatgaa tggatcaaat atctccatgc gaaaacgaag gaacgtaacc ctgagatgcc
     1381 cgactacgag gagatgaaaa cgaccgggat ctttaagaaa aaatgcccgg aagaacacta
     1441 cgtcgctttc cgcgcattcc gtgaagatcc acaggcaaac ccgttgaaaa caccttcggg
     1501 gaaaatcgaa atttattctg aacgactggc gaagattgca gatacctggg aattgaaaaa
     1561 agatgaaatt attcatcccc ttcctgcgta taccccaggt tttgatggct gggacgatcc
     1621 cctgcggaaa acctatccac tgcagttaac gggcttccac tacaaagcgc gtacccactc
     1681 cagctacggc aatattgatg tgttacagca ggcctgccca caagaggtgt ggatcaaccc
     1741 cattgatgct caggcacgcg gtatccgtca tggcgatacc gtgcgggtat ttaacaataa
     1801 tggagaaatg ctgattgccg caaaagtgac tccgcgtatt ctgccaagat tttaaagatc
     1861 ttggcccgga agtcagtttc cgccgtattt atgaatatgc tggcggcgac tggcaggaag
     1921 ataatggcat ctggcaccag aacgtgttcg cttattatct ctccatctcc tgtaaccatt
     1981 gcgatgaccc cgcatgtaca aaagtctgcc ccagcggcgc aatgcataag cgtgaagatg
     2041 gctttgtggt ggttgatgaa gatgtttgta tcggctgccg ctactgccac atggcttgtc
     2101 cgtacggcgc accacagtac aatgctgaaa aagggcacat gacgaattgc gatggttgtt
     2161 attcgcgcgt cgccgagggg aaacaaccca tatgcatcga atcctgcccg ctgcgtgcac
     2221 ttgagttcgg tccaattgaa gagctgcgcc agaagcacgg cactctggct gccgtcgcgc
     2281 cactgccgcg cgcgcatttc acaaaaccca atatcgttat caaacctaac gccaacagcc
     2341 gcccgaccgg cgataccact ggttatctgg ctaatccgga ggaagtgtaa aatgggaaat
     2401 ggatggcatg aatggccact ggttatcttt accgtattgg gtcaatgcgt agtaggcgcg
     2461 ctgattgtta gcggaattgg ctggttcgcc gccaaaaatg acgcagaccg tcagcgtatt
     2521 gtccgtggca tgtttttcct ctggctgttg atgggcatcg ggtttattgc ctctgtcatg
     2581 cacctgggat cgccactgcg agcgtttaac tcgctgaatc gaatcggagc ttctggtctg
     2641 agtaacgaga ttgctgccgg ttccatattt tttgccgttg gtggactatg gtggctggtg
     2701 gcggtcatcg gtaaaatgcc gcaagcgttg gggaaactct ggttacttgt cagcatggcg
     2761 ctcggcgtca ttttcgtctg gatgatgacc tgcgtgtatc aaatcgacac cgtgccaacc
     2821 tggcataacg gttacactac gctggctttc ttcctgacgg tattgttgag cgatccaata
     2881 cttgctgccg caattctgcg ggcagctcgc gttacattta ataccacacc atttgccatc
     2941 attagcgttc tggcgctgat cgcttgtgcc ggggtgattg tgctgcaagg tttgtctctg
     3001 gcgtctattc actcatccgt gcaacaagcc agcgcactgg taccagatta cgcctcctta
     3061 caggtctggc gtgtggtatt gttatgcgca agtcttggat gctggctttg cccgctcatt
     3121 cgtcgccgtg aacctcacgt tgccggactt attctggggc taatcctcat acttggcggt
     3181 gagatgatcg ggcgtgtgct cttttatggc ctgcacatga cagtaggaat ggctattgca
     3241 ggttaacaaa ttggtgcggg gcaacccgca catttcagga tgttaggaat gacccatttt
     3301 tcacagcaag ataatttttc tgtcgcggcg cgcgtgttgg gcgcgctgtt ttattacgct
     3361 ccagagagtg cggaagccgc acctctggtt gcggtactca ccagtgacgg ctgggaaact
     3421 cagtggcctc taccagaagc gtcattagcg ccgctggtga cggcttttca gacacagtgt
     3481 gaagagactc acgcccaggc ctggcagcgt ttgtttgtcg gcccgtgggc actgccgtct
     3541 ccgccgtggg ggtcggtctg gctggatcgc gaatctgtgc tgtttggcga ttcaacattg
     3601 gcacttcgtc agtggatgcg cgagaaaggc attcagtttg aaatgaagca atacgaaccg
     3661 gaagatcatt ttggttcact gctgttgatg gctgcgtggt tggcggagaa tggtcgccag
     3721 acagaatgcg aagaattgct ggcatggcac ctttttccgt ggtcaacacg ttttcttgat
     3781 gtttttatcg aaaaagcaga acaccctttc taccgtgcac tgggtgaact gtctcgctta
     3841 acgctggcgc aatggcaatc acaactgtta attcctgtcg cggttaaacc gctgtttcga
     3901 taggatcacc gtaatattgc cggatggtga cgattacgcg caatccggca ataataggtt
     3961 acagtgtcac gtttttttat ctcttaaagc acgcactgct tttgcggctg gcctcttttg
     4021 ccgcaaaata gtcgcccgtg tttcattgcc catttctgct catgcatcat ctacacatct
     4081 atccggatct gcgcactatg ttccgccgtc tgcttatcgc aacagtcgtc ggtattctcg
     4141 cggcctttgc cgttgccggg tttcgtcatg cgatgctgct actggagtgg ttgttcctca
     4201 ataatgactc cggcagtctg gtcaatgcag cgacaaacct ttccccctgg cgacggttgc
     4261 taactccggc gctcggcgga ctggcggcgg gtttgttgct gatgggctgg cagaaattta
     4321 cccaacaacg ccctcatgcg ccgaccgatt acatggaagc gttgcaaacc gatggacagt
     4381 tcgattacgc agcaagcctg gttaaatcgc ttgcctcgct gctggtagta accagcggca
     4441 gtgcaattgg tcgcgaaggt gcgatgattc ttttagctgc ccttgccgcc tcctgttttg
     4501 cccaacgttt tacgccacgc caggagtgga aattatggat cgcctgtggg gccgcggcgg
     4561 gaatggctgc ggcctatcgt gccccgcttg ctggcagttt atttatagcc gaagtgctgt
     4621 ttggcactat gatgttggcc tctctcggcc cggtgattat ttccgccgtc gtggcattgc
     4681 tggttagcaa tctgattaat catagcgacg cgttactcta caacgtacaa ctctcagtga
     4741 cggttcaggc tcgtgactat gcgctgatta tcagtacagg tgtgctggca ggtctgtgcg
     4801 gaccactgtt gttaacgtta atgaacgcct gtcatcgtgg atttgtgagt ctcaaacttg
     4861 cgccgccctg gcaactggca ctaggcgggt tgatcgtggg tctgctttcc ctgttcacac
     4921 ctgcagtgtg gggcaacggc tatagcaccg tacaatcctt tttaaccgcc ccaccactgt
     4981 taatgatcat tgccgggatc ttcctttgta aactgtgtgc cgtgctggcg agtagcggtt
     5041 ccggcgcacc cggtggtgtc tttacaccga cgctatttat cggtcttgcc attggcatgt
     5101 tgtatggtcg tagcctggga ttatggttcc ctgatggcga agaaattacg cttttactcg
     5161 gattgaccga gatggcgaca ctgttggcgg caaccacgca cgcgccgatt atgtcgacgt
     5221 tgatgatatg tgaaatgacc ggggagtatc agctactccc cggtttattg attgcctgcg
     5281 tcattgcgtc ggtaatttcg cggacgttac accgtgactc tatctaccgc cagcacactg
     5341 cgcagcatag ctaagcggat gtattgcccc agttctcgct gttcggcgcg cggcagataa
     5401 ggcagttcac caatgagcgg tgccggaagt tttttaccca gcacatcaat gatttccgca
     5461 taatgcgcca gtcctgggtt gattcggtta gccacccagc caatgagcgg cagcccgtcg
     5521 ttggcaatcg cctgagctgt tagcagtgca tggttaatgc aaccttcctg aataccgaca
     5581 accatcaaca ccggcaactg ttcctgcacc acccattcag agagtggacg caaatcattc
     5641 atcagactgc gccagccgcc agtcccttct accacgacat gatcgacttt atcggtcagg
     5701 tttgccaggc cgtttgaaat gagggtgtaa ttgattgggc aactgtgcgc cacgctactt
     5761 tcttcttcgc ttaacgcgat aggattaact gcttcataag gcagttcgat ggttgaaaca
     5821 ctctgcaaca ccagggcatc tttattacgc agcccttcgg gtgtctcttt gctccccttc
     5881 gctacgggtt tatatcccgc aactgttttt ccctgggagg ctaacgcttg tagcaatgcg
     5941 cgggaaacca ccgttttccc tacagaagtg tctgtaccgg taataaagaa acgcttcagc
     6001 atcactaact ccaccgttat gcttcacaaa tataaaccag gaaaataatt aaccttgaaa
     6061 gtctaagtta tgctttcctg gcccaaattg agatagcgca aattttggta gaacagttaa
     6121 aaaatgttaa ccctgcaaca gacgaatcaa caaagaaccg ttatacatcg cgtcttttac
     6181 cagcgcagcg cctgccatcg tgccctggtt agaaaactga gtactctcaa cgctaatgtg
     6241 ctgactatac gtaggaaggg cctgctgacg tatgctgtcc gagatgacag ggaagaggat
     6301 atctgccgct ttacttaacg gtgagccaat cagtattttt tgtgggttaa ataaattcac
     6361 catgatggca agaatgcgcc cgacatgcgc gcccaccccg gtaatgatgt cttttgccag
     6421 tagatcgccg cgcaatgccg cctgacacaa tgagtccacg gttaacggtt gcccatgtaa
     6481 catcgagctc atggattgat tgagacgcag ctgtgccagc tcaagaatac tgtccacact
     6541 ggcgatggtt tcgaggcagc cgtggttccc gcaataacag cgtttaccat atgggtcgac
     6601 ctgtgtgtgg cctatttcca cgagactact gctgcctgcg tgtagcagat gaccatcggt
     6661 aatgacgccc gcccccacgt tgtgatcgat aaccacctga atcacatcgc gcgccccgcg
     6721 tgaggcacca aacaaggcct ctgccatcgt ccatgcgctg atatcatgct gaatataaac
     6781 cggtacgccg gtatactgct ccagcgcctc gccgagcggc atctctttta catcctcgta
     6841 gaacggcatg cgatgtacaa taccattttc cgtatcaata attcccggca gggttatggc
     6901 aatcgaagtt agacgctcaa gttttttctg gtggcggata aaaaactgat cgatatggga
     6961 aatgatacga tccagcaatg gcaagtcatc ttttaacgcc agttcctgcg actcttccac
     7021 caccagtttg ctgctcagat cgcgcagagc aaggaaaatc tccccgcgac taatgcgcag
     7081 agaaagatag tgccaggctt cagtttcaac caccagcccc accgccggac ggccacggtt
     7141 ccccgcttct ttgatttcca gctcttgcac caagtgtgct tcgagcatct cacggacaat
     7201 tttagtgata ctggcaggag ccagctgcgc cagacgggaa agatcgatac gcgagactgg
     7261 accaagctga tcaatcaggc gataaaccgc gcccgcgttg gtctgcttta tttgatcaat
     7321 gtgcccaggc tggttttcag caaccaccgc atactcccta tattttcgcg ctccgaaata
     7381 atctgtaggc tatggtgaag cacttcaata cgtgtcgtca aatttttact tagacatgtg
     7441 attaatagca catttttcgg gctttttcgc tgaaatttcc ctcacctgag agcattcagc
     7501 agatgaatac gaaagttacg cgaagctgga ctttgttcat gatgtttcgg ccagaccaac
     7561 cacatttcag aaaccgcatc ctcttcagca atcggcaccc agcgcatttc gttgagctga
     7621 acacgtttaa atgaagcagg caaaattgaa acacccagac cggcggaaac cagaccgatg
     7681 atggtcattg cctcgcccac ctcctgagtg atgacgggcg tcaaatggta acgtcgcatc
     7741 agcccgagaa tatcgtcata cagccctgtc ccgacgtgtg gatcaaaaaa gacgaagggt
     7801 tctttcgcca attcagccaa cgttacattc gggttatttg ccaggggatg atcgtgcggg
     7861 atcatcgcca taagcggttc atggacgatg actgcgtgtt caagcgtctc cggtaacgct
     7921 gtgttacgca gcaatcccat atccagcgtt ccttcaatga gcggagcgat ttgctcacga
     7981 gtgttcattt cgcgggtttg taaatggaca ccgggataat cacggcgaaa cagcgataac
     8041 gtatcggaca ccgcccgaat aaaaggagcg gacgaagtaa aaccaatgcg caactccccc
     8101 gcttcaccct gatgcagtct ttcagcgcga gcggcagcgt catctaccat agacaggatt
     8161 tgccgactat ctgcaagaaa ctgttttcct gctgccgtca gcaatacact gcgattagtt
     8221 cgtgccagca gtcgggcacc aatttgttgc tccagtgcct gaatctgctg acttagcggt
     8281 ggttgcgaaa tattcaggcg ggcagcggcg cgcccgaaat gcagctcttc cgcaacagca
     8341 acaaagtaac gcagatgacg aagttcaata ttcatattta aaacatctta tttgagatta
     8401 ttaatatatt agacagagca attcgatttt cctaacctat gtataagcct gatccacagg
     8461 catatttagc aaggatttca agtgagccgt actacaactg ttgatggcgc tccggcaagc
     8521 gacactgaca agcaaagcat ttctcagcca aatcaattta ttaaacgcgg tacgccgcaa
     8581 tttatgcgcg tcaccctggc gctgttctct gccggactgg caacctttgc actcctctat
     8641 tgtgtgcagc ctatccttcc ggtgctttcg caggagtttg gcttaacccc cgcgaacagt
     8701 agtatttcac tgtccatttc cacggcgatg ttggctattg gtttgctgtt tactggcccc
     8761 ctatccgatg ccattggtcg caaaccagtg atggtcacgg cgctactgtt ggcctccatt
     8821 tgtacgttat ttcgacaatg atgaccagct ggcacggcat tttgattatg cgccccttga
     8881 ttgggctttc gttaagtggc gtggcagctg ttggcatgac ttatcttagc gaggaaatcc
     8941 accccagttt cgtggccttt tcgatggggt tgtatatcag cggcaactca attggcggca
     9001 tgagcggacg cttaattagt ggtgtcttca cggacttttt caactggcga attgctctgg
     9061 cggcaatcgg ttgtttcgcg ctagcctcgg cgttgatgtt ctggaaaatc cttccggaat
     9121 cacgccattt tcgcccgact tcgctgcgac ctaagacgtt gtttatcaac tttcgtctgc
     9181 actggcgtga ccggggatta ccgttattgt tcgcagaagg ctttttgctg atggggtcgt
     9241 tcgtcacgct gtttaattac atcggctatc ggttgatgct ttccccctgg catgtcagtc
     9301 aggccgtggt tggcttatta tcgctggctt atttgaccgg tacacggagc tcacccaaag
     9361 ccggaaccat gaccacccgc tacgggcgcg gtccggtgat gttgttttcg acgggggtta
     9421 tgctgtttgg tttactgatg accttattca gctcgctgtg gctgatcttt gccggaatgt
     9481 tactcttctc agcaggattc ttcgcagccc actcagttgc cagcagctgg atcggccccc
     9541 gcgcaaaacg cgctaaaggc caggcctcct cgctgtatct gttcagttac tatctggggt
     9601 cgagtattgc cgggacgctg ggtggtgttt tctggcataa ctatggctgg aacggcgtcg
     9661 gcgcatttat tgctctgatg ctggtcattg ctctgctggt caggacgcgt ttgcatcgtc
     9721 gtctgcacgc ctgaaaaata agcccggact gcggtaacta cacgtccgga cttattgctt
     9781 gctcaaacca acgttaatag ccatcctaaa atagacgaag cgccagccaa ttcccgcagt
     9841 gcgtctagcg tcatcaggat tataagtacc caaataaacg gattcatttt gctgtgtgtc
     9901 atttattact gatgcgcagt tattctaccg ctttgtaagt agtaaaatag ttaacccgat
     9961 caagactact attattggta gctaaatttc ccttaagtca caatacgtta ttatcaatgc
    10021 tgtaatttat tcagcgtttg tacatatcgt tacacgctga aaccaaccac tcacggaagt
    10081 ctgccattcc cagggatata gttatttcaa cggccccgca gtggggttaa atgaaaaaac
    10141 aaattgaggg tatgacaatg aaaaaagtat tagctctggt tgttgccgct gctatgggtc
    10201 tgtcttctgc cgcctttgct gcagagactg cgacgaccac caaagcagcg ccggcgaaaa
    10261 cgacacatca taaaaaacag cataaagcag cacctgccca gaaagcgcag gcagctaaaa
    10321 agcatcataa aaatacgaaa gctgaacaga aagcccctga acaaaaagcg caggcagcga
    10381 agaaacacgc cgggaaacac agtcatcagc aaccggcaaa acctgctgca caacccgcag
    10441 cgtaagtttt caacagtaat gctggcgcgc cccctcgcgc ctgaaaatta cggtgctaag
    10501 cgggtaacgt ttagcaccgc ctttagcgga gggtagtatg gtgggccgtt atcgctttga
    10561 gttcattctt atcatcctta ttttatgcgc actgattgcc gcccgttttt atctttcctg
    10621 actgtagtta tctgatttta ctcccacttt catcccgtcc cgtctatagt atttatgagg
    10681 gtttgctttt aataatcata attacccacc agagtgtgat atgcgtacaa ccattgctgt
    10741 agtgttgggt gcaattagtt tgacgtctgc ttttgtgttt gcagataaac cagacgttgc
    10801 caaatcggca aacgatgagg tcagcaccct gttttttggt catgatgatc gtgtgccagt
    10861 gaatgacacg gcccaatcac cgtgggatgc ggttgggcaa ctggaaacgg ccagcggcaa
    10921 tttatgtacg gcgacgctga ttgcacccaa tctggcatta acggcaggac actgtttatt
    10981 gacacctcca aagggtaaag ccgataaagc agtggcgctg cgttttgtgt caaataaagg
    11041 tctttggcgc tatgagatcc acgacataga aggccgcgtt gatccgacac tgggaaagcg
    11101 gttaaaagca gatggggatg gttggattgt acctcccgca gccgcgccgt gggacttcgg
    11161 attgattgtg ctacgtaatc ccccttctgg cattacaccg ttgccgttat ttgagggaga
    11221 taaagccgcg cttactgccg cattaaaatc ggctggccgt aaagtaactc aggcgggata
    11281 ccctgaagat catctcgata cgttgtacag tcatcaaaac tgtgaagtga ctggctgggc
    11341 gcaaacgtcg gtgatgtcac atcagtgcga taccttgccg ggtgacagcg gttcgcctct
    11401 gatgttgcat accaatgacg gctggcaatt aattggggtg caaagttcgg ctcctgccgc
    11461 gaaagatcgc tggcgcgccg ataaccgggc catttctgtt accggttttc gcgacaagct
    11521 ggatcaactg tcgcaaaaat aatgttcaaa cgctgcccga ctgtgcgggc agcgtgttca
    11581 tcaggcaagt ttcaccatga tcattccagc caacagcaag accaggccaa tccagccttt
    11641 acgatttaac cgttgaccaa acaagatcca acctgcggct aacgtggcgg caataccaaa
    11701 cccgccccac aatgcataag cgacagacaa gtcgatccct ttaacggcct gagaaagcgc
    11761 actaaaggca gccagcaccg ccgccaggga gagcaagcca aatattttgc gacgaaagcc
    11821 gtcagaaaat ttcaaaaaga cgttagcaac gatttccagc acgattgcca atgccagcca
    11881 ggcggcgtga acccattcaa actgcgccat ggttcacctc cagttcaggt ttacgcgctt
    11941 tacgggtacc tgattttatc aacacaatcc cggcgaccag ggtggttaac ccggcaattt
    12001 tcatcagcga taaactttcg tcgaataaca aaacgctaaa caaggtaata aataaaatac
    12061 cgataccttc ccacagcgca taagctacgc ctaaggcgat ctttttaacg gcgaaagaga
    12121 gaaatatata cgacagagaa atcatcacca gcattaaaat aaagccgcca tttccctcac
    12181 tgacgctcgc ccatttcatt gacagcgtac cggtaatttc tgtagcaata gccaggccta
    12241 ataaaatcca ataaatatac attgtccttc tcctgcaaga gaattatttt aattttcgct
    12301 taattcagcg aaatcaaagt aaagtggtca agccccgcgc atagggcaag cttaggcaga
    12361 agaaaggact aaagcgcgtt gcgccagtgc tgctcaccta cgagcaagat agtggatgag
    12421 gtacgaagat gggtaaatgt tgaaaataag gtcctgaaca aattgtccat aatattacaa
    12481 ttatccgcag tgttgcttct cgtcatcgcg gatgataatt gtcctcggta gttgaacacg
    12541 cctgatttgt atcatagctt aagaattaac tcaaaatatt ttcacttctt tacctgagcg
    12601 gtttgatttt cgttatgatg acggagcgaa aaagacatta ttattagcaa aggaagaaaa
    12661 aacggggaca agcatggcaa agccgatcat cacgctcaat ggcctaaaaa tcgtcattat
    12721 gttgggaatg ctggtcatta ttctctgcgg tatccgtttt gccgccgaga tcatcgtgcc
    12781 gtttattctc gcattattta ttgctgttat tcttaacccg ctggtgcaac acatggtccg
    12841 ctggcgagtg ccgcgtgtac tggcggtgtc gattttgatg accatcatcg tgatggcgat
    12901 ggtgttgcta ttagcttatc tgggttccgc gctcaacgag ttgacgcgga cgttaccgca
    12961 atatcgcaac tctattatga cgccgctgca agctcttgag ccgttgttgc aacgcgtagg
    13021 gattgacgtc tcagttgacc agctggcgca ttacattgat ccgaacgcag cgatgacgtt
    13081 gctcaccaac ttattgacgc agttatctaa tgccatgtca tcaatatttt tattgctgct
    13141 gacggtgctg tttatgctgc tcgaagtgcc acaattgccc ggaaaatttc agcaaatgat
    13201 ggcgcgtccg gttgaaggga tggcggcgat tcaacgtgca attgacagtg tttctcatta
    13261 tctggtgctg aaaacagcca tcagcatcat caccggcctg gtcgcctggg cgatgctcgc
    13321 cgcactcgat gttcgcttcg cttttgtctg gggattgctg gcctttgcgc ttaattacat
    13381 ccctaatatt ggttcagttc tcgcggcaat cccccctatc gctcaggtac tggtgtttaa
    13441 tggcttctac gaagcgttgc tggtgctggc gggatatctg ctgattaatc tggtcttcgg
    13501 caatattctg gagccgcgca tcatgggacg tgggctggga ctttccacat tggtggtatt
    13561 tttgtcgttg attttttggg gatggttgtt aggaccggtg ggtatgctgc tttccgtgcc
    13621 gttaacaatt attgtcaaaa ttgcgcttga acaaacagcg ggaggtcaaa gcatcgccgt
    13681 tctgttaagc gatctcaata aagagtgacg gcctccgcag aggccgtcag ggttacagag
    13741 ctttcaggat tgcatccacg ctggctttgg cgtcaccaaa cagcatgtgg gtgttttcct
    13801 tgaagaacag cgggttttgc acaccagcat agccagtgtt catcgaacgt ttaaagacaa
    13861 tcacgttctg cgctttccac acttccagca caggcatacc agcaatagga cttttcggat
    13921 catcctgcgc cgccgggtta accgtatcgt tagcaccaat caccagtacg gtatcggtat
    13981 cagcaaagtc atcgttgatc tcgtccattt ccagcacgat gtcatacggt acttttgctt
    14041 cagccagcaa tacgttcata tgtccaggca aacgccccgc aaccgggtgg ataccgaaac
    14101 gcacgttgat accacgagcg cgcagtttct cggtaatttc agcgacagga tattgcgcct
    14161 gcgcgactgc catgccgtac cccggagtaa tgatcactga atgggagttt ttcagcagtt
    14221 ccgctgtctc ttctgcggtg atttcgcggt gctcgcccac ttcctgatca tcgccagtag
    14281 aagagccgtc ggtgccgaaa ccacccgcaa taacgctgat aaaggaacgg ttcatcgcct
    14341 tacacataat gtaagaaagg atagcccccg aagaaccgac cagcgcaccg gtcacaatca
    14401 gcaggtcgtt gctgagcata aagcccgcag ccgcagccgc ccagccggag tacgagttca
    14461 gcatcgacac caccactggc atatctgcac caccgatgga ggcgactaaa tgccagccga
    14521 ataccagcgc aatggcggtc attattagca atgccagcac ttgcaggccg acgctgtccg
    14581 tgcgaacaaa tacaatcagc agcaggaagg aaacgaccag agccgccagg ttcattttgt
    14641 gacggtttgg cagcatcaac ggtttagacg aaatcttgcc acacagtttg ccgaacgcca
    14701 ccaccgaacc cgtgaacgtt accgccccga tgaagatacc gaggaacact tccgtcaggt
    14761 gaatattgac cagaatcggt gccattcccg cgtcatgatg cagatagctg ttaaagccaa
    14821 ccagcactgc cgccagaccc acgaagctgt gcaggatcgc caccagttct ggcatttcgg
    14881 tcatttcaac tttcttcgcc agacggatac caattgcccc tccaatgacc atcgccagca
    14941 agatccagcc aacattaccc gtatccggtc caaaaatggt tgcgattaac gcaatcgcca
    15001 tccctgcgat accgaagttg ttaccctggc gagacgtttc atgtttcgaa agaccggcca
    15061 gactgaagat aaacaggatc gcggcaacaa tgtatgcagc tgtaactaat cctccagaca
    15121 tatgttaccc cttaattttt gcggaacatt ttcagcatgc gctgagtcac ggtgaagcca
    15181 ccgaaaatat taatgctggc tataagcacc gcgataaaac taaggaagct aacccagccg
    15241 ccctggccaa tctgcaacag tgctccgaca acaataatcc ctgaaatcgc gttggtgacc
    15301 gacatcaacg gtgtatgcag cgcgtgcgat acattccaca ccacgtaata accgacaacg
    15361 caggccagcg cgaaaacggt gaagtgccca agaaactctt tcggcgcaac gcttgccagc
    15421 caaccgaaaa ggatgattgc cagcgccatc aacgcgtatt tacgccacgg tgagcaggca
    15481 catttttcct cagttttcac ttccggtgcc gctttttgtg ccgcctgcgg ctgagctgat
    15541 acctgaatcg gcggtgccgg ccaggtaatt tcgcccgcac ggatcacggt cacgcggcga
    15601 atcaccacat catcaaaatc aacagtgata ttgccgtctt tctctttgca caacagtttc
    15661 agcagattaa cgaggttagt accgtaaagc tgcgaggatt gcgtcggcag acggcccgga
    15721 agatcggtat aaccaatcac tttgacacca ttttccgtag tgaagatttc acccggcacg
    15781 gtgtattcac agttgccacc gttttgggct gccaggtcga caatcacact gcccgtcttc
    15841 atggagtcaa ccatttcacg ggtaattagc ttcggcgctg gtttgcctgg aataagcgcg
    15901 gtggtgacaa tgatatcgac ctcttttgcc tgggcggcaa agagttccat ttccgcttta
    15961 atgaacgcgt ccgacatcac tttggcatag ccatcgccgc tgcccgcttc ctctttaaaa
    16021 tccagctcga ggaattccgc gcccatactt tgaacttgtt ctttcacttc cggacgggtg
    16081 tcgaatgcac gcacaatcgc gccgagactg tttgctgcgc caatggcggc cagacctgca
    16141 acacccgcac caatcaccat cacttttgcc ggtggcactt tcccggccgc agtaatttgc
    16201 ccggtaaaga agcgcccaaa ttcatgtgcc gcttcaacaa tggcgcgata accggcgatg
    16261 ttcgccatcg agcttagtgc gtccagcgat tgtgcgcgtg agatacgcgg cacagaatcc
    16321 atcgccatca cggtcacgtt acgttccgca agtttttgca ttaattccgg attctgcgca
    16381 ggccagataa aactcaccag cgttgtccca ggattcagta acgcaatttc atcatctaac
    16441 ggcgcattga ccttcagaat gatctctgac tgccagacgc tattcccttc tacaatttca
    16501 gcgcccgctt gcacaaacgc tttatcgtca aaacttgcca gttgacccgc gccgctctct
    16561 accgcgacgg taaaacccag tttcagcagc tgttccactg tttttggcgt tgctgcaaca
    16621 cgggtttcat tggttaaccg ttctcttggt atgccaattc gcatgatatt cccttccatc
    16681 ggttttattg atgatggttt gcctgtgtca ggagccacac aagccgctca tgtacgagct
    16741 aaatgttact ccgttaaaat aaattagtaa caaacgccct ataacgtact gaaaattatg
    16801 cctgtgatct agcgccaaaa atcagtattt cggcgtgaac tcgcaaaata ttaacgattc
    16861 agccgtgata gtgggataaa caccttagaa cgccggataa agactgataa ttgtcttcga
    16921 cggtcgggta aaacgagaca tcgccccggc acgattcact acttaacatt aaattaactt
    16981 atacaattca gttgcttcag tagtaatgat gctgatacgg ctgtttttta agcatagacg
    17041 gtcatttgag caggattaaa attggcttaa ggaatgtgat atgaaaaatg acgcagacag
    17101 ttacaccgtt taaatgcaat aatcagccac gtttctcgtt aataacaata ccagtacctg
    17161 gtttgcgcaa ggcgaaggat tatttttatg aagcttaaga acaccctcct ggcgtcggca
    17221 ctgctttctg ctacggcatt ctccgttaac gcagcaacag aactgacacc ggagcaagcg
    17281 gcagcggtta aaccttttga ccgtgtagtg gttaccggtc gttttaatgc tattggcgaa
    17341 gcggtgaaag ccgtttctcg tcgcgcagat aaagaaggtg ccgcctcttt ttatgttgtc
    17401 gacacttctg attttggtaa cagcggtaac tggcgtgtgg tcgctgacct ctataaagcc
    17461 gatgctgaaa aagcagaaga aacaagtaat cgcgtaatta acggtgttgt cgaactgccg
    17521 aaagatcagg ctgttctgat tgaaccgttt gacacggtca ccgtccaggg cttctatcgt
    17581 agccagccag aagtcaatga tgccatcacc aaagcggcaa aagcgaaagg tgcctactct
    17641 ttctacatcg ttcgtcaaat cgatgccaac cagggcggca accagcgtat tactgcattc
    17701 atctataaaa aagatgctaa gaaacgtatc gtccagagcc cggatgtgat cccggcagat
    17761 tccgaagcag gacgtgcagc tctggctgcc ggtggcgaag ccgcgaagaa agttgagatc
    17821 ccaggtgttg cgactaccgc atcaccaagt tctgaagtcg gtcgtttctt tgaaacccag
    17881 tcattaaaag gcgggcgtta caccgtcacg ctcccggatg gcactaaagt cgaagaactg
    17941 aacaaagcga ccgcagcgat gatggtcccg ttcgatagca tcaaattctc tggcaactac
    18001 ggcaacatga ccgaagtctc ctatcaggtt gcgaaacgtg ccgcgaagaa aggtgctaag
    18061 tattaccaca tcacccgcca gtggcaggaa cgtggtaata acctgaccgt cagcgcagat
    18121 ctgtataaat aactattcag ttactcctat aaggcggctt gatgccgcct ttcgcatttt
    18181 tagtcacaaa tttccccgcg accattgcat gcagacacat ctcttcgtaa aatcccgcgc
    18241 ttcagtggca aactccattt ttatgcgttt tgccctaata tttattcttc ttatcacgtt
    18301 ttaatcactg gatatcgatg gaaaagaaac tgggactgag cgcactcacc gcgctggtat
    18361 taagctcaat gctgggcgcg ggtgttttca gtctgccgca aaatatggcg gcagttgcca
    18421 gcccggcagc actgctcatc ggctggggta ttactggcgc tggcatttta ttgctggcct
    18481 ttgccatgct gatcctcacg cgcattcgtc ccgaacttga cggcggtatc tttacctatg
    18541 cccgcgaagg gtttggcgag ctaatcggct tttgttccgc atggggatac tggctgtgcg
    18601 cagtcatcgc caacgtctcc tatctggtga tcgttttttc cgcgttaagc ttttttacgg
    18661 acacgccgga attgcgcctg ttcggcgatg gtaatacctg gcaatcgatc gtcggtgcat
    18721 cggctttatt gtggattgtt cactttttga tcctgcgcgg ggtgcaaacc gctgccagca
    18781 ttaacctggt ggcgacactg gcaaaattgt tgccgctggg tctgtttgtt gtgctggcga
    18841 tgatgatgtt caaactggat accttcaagc tcgacttcac cggacttgta cttggcgtac
    18901 ccgtttggga acaggtgaaa aacaccatgc tgatcaccct gtgggttttc attggtgtgg
    18961 aaggtgccgt ggttgtttct gcgcgtgcgc gtaataaacg tgatgttggc aaagcgacac
    19021 tgctggcggt tctctccgct ctgggcgttt acttgctggt aacgctgctt tcgctgggtg
    19081 tggtggcacg tcctgaactg gctgaaattc gtaacccgtc aatggccggt ctgatggtgg
    19141 aaatgatggg accatggggc gaaatcatca tcgctgccag tttgatcgtt tccgtttgcg
    19201 gcgcgtactt aagctggacc atcatggcgg cagaagttcc gttcctggct gccactcata
    19261 aagcattccc acgcattttt gcgcgccaga acgcacaagc tgcgccatcc gcctcactgt
    19321 ggttgaccaa catctgcgtg caaatttgtc tggtactcat ctggctgacc ggttccgatt
    19381 acaacacgtt gctgaccatc gcctcagaaa tgattctggt gccctatttc ctggtcggcg
    19441 cgttcttgct gaaaatcgca acccgtccac tgcataaagc ggtaggtgtc ggtgcctgca
    19501 tttatggctt atggttattg tacgcctctg gtccaatgca cttgctgtta tccgttgttc
    19561 tgtatgcgcc ggggctgctg gttttcctgt atgcgcgcaa aacgcataca catgataatg
    19621 tactgaaccg tcaggaaatg gtgctgattg gcatgctgtt aattgcctca gttccggcga
    19681 cctggatgct ggtgggataa cgttcatccc atcgttggat agcaaaggag ataacgatgg
    19741 gtaaagccca gcccttgcca atattaatta ctggcggagg tcgtcgcatc ggcctcgccc
    19801 tcgcctggca tttcattaat caaaagcaac cggtgattgt cagctatcgg acgcactatc
    19861 cagccattga tggactgatt aaggcaggtg cgcagtgtat tcaggctgat ttttcgacca
    19921 acgacggtgt gatggcgttt gccgatgaag tactaaaaag cacccatggt ctgcgtgcta
    19981 ttttgcataa cgccagtgcg tggatggcgg aaaaaccggg tgcgccactg gccgacgtac
    20041 tggcttgcat gatgcagatc cacgttaata ccccatacct gctcaaccat gcgctggaaa
    20101 gattactgcg tgggcacgga cacgccgcca gcgatatcat tcactttacc gattatgtgg
    20161 tggagcgcgg tagcgacaag catattgcgt atgctgcaag caaagcggca ctggataata
    20221 tgacccgctc gtttgcccgc aagctggcac cggaagtgaa agtgaattct attgctccat
    20281 cgctgatcct gtttaatgaa catgatgatg ccgaatatcg acaacaggcg ctgaataaat
    20341 cactgatgaa aaccgcgcct ggcgagaaag aagtgatcga cctggtcgat tacttactta
    20401 ccagttgctt tgtcaccgga cgcagtttcc cacttgatgg cggtcgtcat ctgcgttaat
    20461 gcagctttat ccagcatata atcaacaccc atgcgcttat cccccaacac gcaacagaac
    20521 caacaaaagc ggcgggcaag cgcatcattc cggtgaaata ccacagcgac accaggtaaa
    20581 caaaataggg gataatcgac cacatactaa aaatgatggt tgcgcgtaag gcttcaatgc
    20641 cgcgttcgct ggcaacaata taatgcgcga taagcgcaaa ggtcgggaaa agtggaatca
    20701 gcccggcgat ataataattt ttcgtttttg ctaaaacacc aatcaacagc actaccagcg
    20761 caccgagcgc ggctttgatt accagcccca ttttttacct taacacttcc ataacaagtc
    20821 atcagtagaa tacctgatga aaacttgttt agaaacgatt gatagtaagt aaaaacagcg
    20881 cggtgtattg tgacgttttt atatctaccg tgaatgttat gaacactatc gtatttgtgg
    20941 aagatgatgc ggaagtcggt tcactgattg ccgcgtacct ggcaaaacat gatatgcagg
    21001 ttaccgtaga gccgcgcggc gaccaggccg aagaaaccat tttgcgagaa aatccggatt
    21061 tggtgttact cgacatcatg ctaccaggca aggacggcat gaccatttgt cgtgatttac
    21121 gcgcaaagtg gtctggaccg attgttcttc taacctctct cgatagcgat atgaaccaca
    21181 tcctggcact ggaaatgggt gcgtctctga ctccctacaa agccctgcat ttcggcacgt
    21241 tgaccatcga tcccatcaac cgcgtagtca ccctggctaa cactgaaatc tcgctctcga
    21301 cagctgattt cgaattattg tgggaattag ctacccatgc cgggcaaatc atggaccgcg
    21361 atgcattgct gaaaaattta cgcggcgtca gttatgacgg actggatcgt aacgtggacg
    21421 tggctatttc gcggttaaga aaaaaactgc tcgataacgc cgcagaacct tatcgcatta
    21481 aaactgtgcg taacaaaggc tatctttttg cgcctcatgc atgggaataa gcgatgaaaa
    21541 aactgtttat ccagttttac ctgttattgt ttgtctgctt ccttgtgatg tctctgctgg
    21601 ttgggttggt gtacaaattt accgccgaac gcgcgggcaa acagtcgctg gatgatttga
    21661 tgaacagttt gctgtatctg atgcgcagcg aattgcgtga gatcccccca cacgactggg
    21721 gtaagacgct gaaagagatg gatttaaatc tctctttcga tctgcgtgtc gagccactga
    21781 gtaaatacca tcttgatgat atttccatgc accgactgcg tggcggcgaa attgtcgccc
    21841 tggacgatca gtacacgttt ttgcagcgta tcccgcgcag ccactacgtg ctggcagttg
    21901 gtcctgttcc ttatctttat tatctccatc agatgcgatt gctggatatc gccctgatcg
    21961 cttttattgc tatttccctc gcctttccgg tgtttatctg gatgcgtccg cactggcagg
    22021 atatgttaaa actggaagca gcggcgcaac gatttggcga tgggcatctc tatgagcgta
    22081 tccactttga tgagggttcg agctttgaac gacttggtat cgcatttaac cagatggcgg
    22141 acaatatcaa cgccttgatt gccagcaaaa aacagcttat tgacggtatc gctcacgaac
    22201 tgcgaacacc gttagtgcgc ctgcgttatc gactggagat gagcgataac ctgagcgccg
    22261 ccgagtccca ggcgttgaat cgtgatatca gtcaacttga agctttaatt gaagagctgc
    22321 tgacttatgc ccgactcgat cgcccacaaa acgagcttca tcttagcgaa ccagacctgc
    22381 cgttgtggct gtcaacgcat ctggcagata ttcaggcagt aacgcccgat aaaacggtac
    22441 ggataaaaac gctcgtgcaa ggccattatg cggcgttgga tatgcgctta atggagcgcg
    22501 tgctggataa tttgctcaat aacgccctgc ggtactgcca ttcaacggtt gaaaccagcc
    22561 tgctactgtc ggggaataga gcgacattaa ttgttgagga tgatggccca gggattgccc
    22621 cagaaaaccg cgaacatatc tttgaacctt ttgttcgcct cgatcccagc cgggatcgct
    22681 caaccggcgg ctgcgggctg gggctggcaa ttgtccactc tatagcactg gcaatgggcg
    22741 gtacggttaa ttgtgacacc agcgaactgg gtggtgctcg cttctcgttt agctggccgt
    22801 tatggcataa catcccgcaa tttacctctg cctgacacta cgcgcacgat ggtgaagtca
    22861 ccaccattgt gctataaatt aaggatgttg taactaaagt ggttaatatt atggcgcgtt
    22921 acgatctcgt agaccgactc aacactacct ttcgccagat ggaacaagag ctggctgcat
    22981 ttgccgctca tcttgagcaa cacaagctat tggttgcccg cgtgttctct ttgccggagg
    23041 taaaaaaaga ggatgagcat aatccgctta atcgtattga ggtgaaacaa catctcggca
    23101 acgacgcgca gtcgctggcg ttgcgtcatt tccgccattt atttattcaa caacagtccg
    23161 aaaatcgcag cagcaaagcc gctgtccgtc tgcctggcgt gttgtgttac caggtcaata
    23221 acctttcgca agcagcgttg gtcagtcata ttcagcacat caataaactc aagaccacgt
    23281 tcgagcatat cgtcacggtt gagtcagaac tccccaccgc ggcacgtttt gaatgggtgc
    23341 atcgtcattt gccggggctg atcaccctta atgcttaccg ctcgctcacc gttctgcacg
    23401 accccgccac tttacgtttt ggctgggcta ataaacatat cattaaaaat ttgcatcgtg
    23461 atgaagtcct ggcacagctg gaaaaaagcc tgaaatcacc acgcagtgtc gcaccgtgga
    23521 cgcgcgagga gtggcaaaga aaactggagc gagagtatca ggatatcgct gccctgccac
    23581 agaacgcgaa gttaaaaatc aaacgtccgg tgaaggtgca gccgattgcc cgcgtctggt
    23641 acaaaggaga tcaaaaacaa gtgcaacacg cctgccctac accgctgatt gcactgatta
    23701 atcgggataa tggtgcgggc gtgccggacg ttggtgagtt gttaaattac gatgcagaca
    23761 atgtgcagca ccgttataaa cctcaggcgc agccgcttcg tttgatcatt ccacggctgc
    23821 acctgtatgt tgcagattaa cgcccggctt tcatactgcc gaccatctgt tctggccgta
    23881 cccagctgtc aaactcggct tcgctaagat accccagcgc aagggccgca gcttttaagg
    23941 tcagcccttc tttatgcgct tttttggcga tctccgcggc tttgtcataa ccaatgtggg
    24001 tgttaagcgc agtcaccagc atcagcgatt cattgagtaa ttgattgatt cgctcacgat
    24061 tcggttcaat acccactgcg cagtgtttgt taaaactttc catgccatct gccagcaagc
    24121 gcaccgattg caggaaatta tggatcacca tcggacggaa gacgttcagt tcaaagttac
    24181 cagaagcgcc acccatgttg atcgccacgt cgttccccat tacctgacag cagagcatgg
    24241 ttaatgcttc acactgggtt gggttcactt tccccggcat gattgagctg cccggctcat
    24301 tttccgggat tgagatttca ccaattccgc agcgcgggcc agaggccagc cagcggacat
    24361 cattggcgat tttcatcagt gacgcagcca accctttcaa cgcgccgtgc gcctgaacca
    24421 gggcatcaca ggtcgcaagc gcttcaaatt tgttcggcgc ggtaacaaac ggtgcacagg
    24481 taatgactgc cagttcatct gctacgcgac gcgcatactc cggatgggta tttagtccag
    24541 tacccaccgc tgtaccgcca agagccagtt ccgctacgtg aggcaggctg tattcgatat
    24601 gtttgagatt atgctcgagc atcgctaccc agccggaaat ctcctgccct agtgttagcg
    24661 gcgtggcgtc ctgcaagtgg gttcgaccga ttttgacgat atcggcaaat gcacgcgatt
    24721 tttcactcag tgtctgtgtc agggttttaa gctgcggaat gagttgcttg cgcagcgcca
    24781 gcagcgccgc aacgtgcatc gccgtcggaa agacatcgtt ggaactttgg cttttgttca
    24841 cgtcgtcgtt agggtgaact ttacgttcca tcccgcgcac gccgccgagt aattcactgg
    24901 cccggttagc cagcacttcg ttcatgttca tgttactttg cgtgccggag ccggtctgcc
    24961 agatagccag cgggaattcg tcgtcatgct gtcctgccag tacttcatcc gccgcctgcc
    25021 gaatggcgct cgctttctct tcagacaaca agcctaaatc ttcattaact tttgccgctg
    25081 cgcgcttggt tagcgccagc gcatgaatca gtgaggtggg cattttctcc gtcgaaatgc
    25141 ggaaatgctc cagcgagcgt tgagtttgtg cgccccacag cttatctgcc gggacatcaa
    25201 tcgcccccat cgaatctttt tcgctgcgta ctgtattcat ggcctgctcc tcacctgttt
    25261 aattttttct ttctgttttg ctttcgttaa gcaactttta gctcacttat tatttactat
    25321 ttgataacaa atgtttggtc tttcgtgcca tgtaaaaaaa ccgccccgaa gggcggctct
    25381 gtttatttca cacagcgagt gcactgtgtg agttgtatct gctggaagaa gtcatttcct
    25441 ttatcatcca caaggataaa cgccgggaaa tcttccactt caattttcca gatggcttcc
    25501 attcccagtt ccggatattc aacacattcc aggctcttaa tacttccctg cgccaataca
    25561 gcggccggac caccgatact gccaaggtag aagccgccgt gttttttaca ggcatccgtc
    25621 acctgctggc tgcggttgcc tttcgccagc atgatcatac ttccgccctg cgcttgcagt
    25681 tgatcgacat aagaatccat ccgtccggcg gtcgttgggc caagagaacc ggaggcataa
    25741 ccttccggcg ttttggccgg acccgcgtag taaatcggat gatctttaat gtactgcggc
    25801 agcccttcac cgttatccat ccgctctttc agtttggcgt gagcaatatc acgaccgacg
    25861 ataatcgtgc cgttaagcga taagcgtgta gaaacgggat actgcgacaa ctgtgcgagg
    25921 atctctttca tcggacggtt aaggtcaacg cgcaccgctt cgccttctcc cgctttacgc
    25981 agctcttcag ggatatattt acctggatta tgttccagtt tttcgatcca gatcccctga
    26041 cggttgatct tcgctttgat attacggtca gcagagcagg aaacacccat accaaccgga
    26101 caggatgcgc cgtgacgtgg caggcgaatc acgcgtatgt cgtgagcgaa gtatttacca
    26161 ccaaactgcg cacccagacc gagattttgc gcttcgatca gcaattcttt ttccagttcc
    26221 acatcgcgga atgcctgacc gtgctcattc ccttccgttg gcagttcgtc atagtattta
    26281 gcggaagcca gtttcactgt tttaaggtta gtttctgcag aagttccacc aattacgaac
    26341 gcaatatgat acggaggaca ggccgccgta cccagcgtgc gcatcttctc aaccaggtaa
    26401 tttttcagtt tccccggcgt tagtaacgct ttggtttcct gatagagata cgtcttgttt
    26461 gccgaaccac cacctttggc gatacagagg aatttgtact cgtcgccatc aacggcataa
    26521 agatcgatct gcgctggcag attggtgccg gtattcacct ctttatacat atccagcggc
    26581 gcgttttgcg agtagcgcaa attatcttcg atataagtgt tatagacacc gcgcgccagc
    26641 gccgcttcat cacagccacc ggtccataca cgctgccctt ttttaccaac aataatcgca
    26701 gtgccggtat cctgacaggt tggcagaaca cctttcgccg cgatgtcgga gttgcgcagg
    26761 aattgcagcg ccacatattt atcattttcg ctggcttccg ggtcacgcag aatgtcggcc
    26821 acctgttgtt ggtgagccgg acgcagcata aatgacgcat catgaaacgc ctgacgcgcc
    26881 aacagagtta acgcttcggg tgcgactttc aaaatctcct gcccttcaaa ttcagatacg
    26941 ctaacgtgtt cgctggttag caggtaatac tcagtatcat cttttttgag tggaaaagga
    27001 gcctgataat gaaagggttt gtttgacatt gttctctcac ttactgcctg gtttggttat
    27061 gctctgggcg ggtgttccgt tgccctgtta aaagcgagta acaatatcct acacgctttt
    27121 ttaacaaaaa ctgagactag tacgactttt tgcggctcca ggttacttcc cgtaggattc
    27181 ttgctttaat agtgggatta atttccacat taaaacaggg attgatcatg caaaaactca
    27241 ttaactcagt gcaaaactat gcctggggca gcaaaacggc gttgactgaa ctttatggta
    27301 tggaaaatcc gtccagccag ccgatggccg agctgtggat gggcgcacat ccgaaaagca
    27361 gttcacgagt gcagaatgcc gccggagata tcgtttcact gcgtgatgtg attgagagtg
    27421 ataaatcgac tctgctcgga gaggccgttg ccaaacgctt tggcgaactg cctttcctgt
    27481 tcaaagtatt atgcgcagca cagccgctct ccattcaggt tcatccaaac aaacgcaatt
    27541 ctgaaatcgg ttttgccaaa gaaaatgccg caggtatccc gatggatgcc gccgagcgta
    27601 actataaaga tcctaaccac aagccggagc tggtttttgc gctgacgcct ttccttgcga
    27661 tgaacgcgtt tcgtgagttt tccgagattg tctccctact ccagccagtc gcaggtgcac
    27721 atccggcaat tgctcacttt ttacaacagc ctaatgccga acgtttaagc gaactgttcg
    27781 ccagcctgtt gaatatgcag ggtgaagaaa aatcccgcgc gctggcgatt ttaaaatcgg
    27841 cgctcgacag tcagcagggt gaaccgtggc aaacgattcg tttaatttct gaattttacc
    27901 cggaagacag cggcctgttc tccccgctgt tactgaatgt ggtgaaattg aatcctggcg
    27961 aagcgatgtt cctgttcgct gaaacaccgc acgcttacct gcaaggcgtg gcgctggaag
    28021 tgatggcgaa ctccgataac gtgctgcgtg cgggtctgac gcctaagtac attgatattc
    28081 cggaactggt tgccaatgta aaattcgaag ccaaaccggc taaccagttg ttgacccagc
    28141 cggtgaaaca aggtgcagaa ctggacttcc cgattccagt ggatgatttt gccttctcgc
    28201 tgcatgacct tagtgataaa gaaaccacca ttagccagca gagtgccgcc attttgttct
    28261 gcgtcgaagg cgatgcaacg ttgtggaaag gttctcagca gttacagctt aaaccgggtg
    28321 aatcagcgtt tattgccgcc aacgaatcac cggtgactgt caaaggccac ggccgtttag
    28381 cgcgtgttta caacaagctg taagagctta ctgaaaaaat taacatctct tgctaagctt
    28441 attaaaggct tataacacct tcaggcggcc agtccgcctg atttcatttt atggataatc
    28501 attatgaata aatcgctggt agcggtaggc gtcattgttg cgctaggcgt agtctggaca
    28561 ggcggcgcat ggtatacagg caagaagatt gaaacccatc tcgaagacat ggtcgcgcag
    28621 gcgaacgcgc aactcaaact gacagctcct gaatccaacc tggaagtgag ttatcaaaac
    28681 tatcatcgcg gcgtattcag cagccagttg caactgttgg tgaaacccat tgccgggaaa
    28741 gaaaatccgt ggattaaaag cggtcagagc gtcatcttca acgaatcggt tgatcatggt
    28801 cccttcccgc ttgcccagct taaaaaactg aacctgatcc cgtcgatggc atcaattcaa
    28861 accacgctgg ttaataacga agtaagcaaa ccactgtttg atatggcaaa aggtgaaacg
    28921 ccttttgaga ttaactcgcg cattggttac agcggtgatt ccagttccga tatttcgctc
    28981 aagccactga attacgagca aaaggatgaa aaagtcgcct ttagcggcgg cgagttccag
    29041 ttaaatgctg acagagacgg caaagccatc tccctttccg gggaggcgca aagtggtcgg
    29101 atagacgcag ttaacgaata caaccagaaa gtgcagttga cctttaataa tctgaaaacc
    29161 gacggttcca gcacgctggc aagttttggt gagcgcgtag gaaaccaaaa actgtcactg
    29221 gaaaaaatga ccatttcagt ggaaggcaaa gaactggcac tgctggaagg catggagatc
    29281 agcggtaaat cggatctggt caatgacggt aaaacgatca atagccaact ggattactcg
    29341 ctaaacagcc tgaaggtaca gaatcaggat ctgggcagcg gcaagctgac tttaaaagtc
    29401 ggccagattg atggtgaagc ctggcatcag ttcagccagc aatataacgc gcaaactcag
    29461 gcgctgctgg cacagccaga aattgccaac aatcccgaac tttatcagga gaaagtgacg
    29521 gaagccttct ttagcgccct gccgctgatg ttgaaaggcg atccggtgat tactgtcgcg
    29581 ccgctaagct ggaaaaacag tcagggtgaa agtgcgctga atctgtcgct gttcctgaaa
    29641 gatccggcaa cgactaaaga agcgccgcaa acgctggcgc aggaagtaga tcgttcggtt
    29701 aaatctctgg atgcgaaact gaccattccg gtggatatgg caactgagtt tatgactcag
    29761 gtagcgaagc tggaaggtta tcaggaagat caagcgaaaa aactggcgaa acagcaagtt
    29821 gaaggt
//
LOCUS       DAJVUN010000031        29705 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.031, whole genome shotgun sequence.
ACCESSION   DAJVUN010000031 DAJVUN010000000
VERSION     DAJVUN010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29705
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.031"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..362
                     /gene="sxy"
                     /locus_tag="OQQ76_001139"
     CDS             <1..362
                     /gene="sxy"
                     /locus_tag="OQQ76_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HCS1967711.1"
                     /translation="NQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILG
                     EVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHEAALPVARRQELA
                     EWADSLTPKQEFPAELE"
     gene            complement(325..2487)
                     /gene="yccS"
                     /locus_tag="OQQ76_001140"
     CDS             complement(325..2487)
                     /gene="yccS"
                     /locus_tag="OQQ76_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HCS1967712.1"
                     /translation="MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLT
                     IPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLST
                     SGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIG
                     HLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDESQAPLYDLALANGLLMATLN
                     QTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFR
                     FQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTL
                     GFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESA
                     LFRHAVRMSLVLCFGYAIIQITGMHHGFWILLTSLFVCQPNYNATRHRLKLRIIGTLV
                     GIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEG
                     FEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQ
                     GRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYIS
                     ALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRAD
                     SKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA"
     gene            complement(2497..2943)
                     /locus_tag="OQQ76_001141"
     CDS             complement(2497..2943)
                     /locus_tag="OQQ76_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HCS1967713.1"
                     /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI
                     TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC
                     ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE"
     gene            3066..5120
                     /gene="helD"
                     /locus_tag="OQQ76_001142"
     CDS             3066..5120
                     /gene="helD"
                     /locus_tag="OQQ76_001142"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase IV"
                     /protein_id="HCS1967714.1"
                     /translation="MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL
                     AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV
                     LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ
                     AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA
                     GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH
                     ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ
                     WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM
                     APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL
                     AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI
                     GKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL
                     ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARES
                     IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR
                     KP"
     gene            complement(5152..5610)
                     /gene="mgsA"
                     /locus_tag="OQQ76_001143"
     CDS             complement(5152..5610)
                     /gene="mgsA"
                     /locus_tag="OQQ76_001143"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HCS1967715.1"
                     /translation="MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYA
                     TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV
                     KALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK"
     gene            complement(5706..6368)
                     /locus_tag="OQQ76_001144"
     CDS             complement(5706..6368)
                     /locus_tag="OQQ76_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HCS1967716.1"
                     /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL
                     RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE
                     NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL
                     PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP
                     SS"
     gene            6541..6954
                     /locus_tag="OQQ76_001145"
     CDS             6541..6954
                     /locus_tag="OQQ76_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HCS1967717.1"
                     /translation="MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVI
                     PVSPKVAGKTLLGQQGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQL
                     GVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK"
     gene            complement(6999..7316)
                     /gene="hspQ"
                     /locus_tag="OQQ76_001146"
     CDS             complement(6999..7316)
                     /gene="hspQ"
                     /locus_tag="OQQ76_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HCS1967718.1"
                     /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND
                     ELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPR
                     LRN"
     gene            complement(7374..8564)
                     /gene="rlmI"
                     /locus_tag="OQQ76_001147"
     CDS             complement(7374..8564)
                     /gene="rlmI"
                     /locus_tag="OQQ76_001147"
                     /EC_number="2.1.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HCS1967719.1"
                     /translation="MSVRLVLAKGREKSLLRRHPWVFSGTVARMEGKASLGETIDIVD
                     HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY
                     RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALVSALQTLYPECAIYDRSDVA
                     VRKKEGMELTLGLVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY
                     VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV
                     RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI
                     LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA
                     CRVM"
     gene            8659..8937
                     /gene="yccX"
                     /locus_tag="OQQ76_001148"
     CDS             8659..8937
                     /gene="yccX"
                     /locus_tag="OQQ76_001148"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HCS1967720.1"
                     /translation="MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV
                     EVVACGEEGQVEKLMQWLKSGSPRSARVERVLSEPHHPSGELTDFRIR"
     gene            complement(8934..9263)
                     /gene="tusE"
                     /locus_tag="OQQ76_001149"
     CDS             complement(8934..9263)
                     /gene="tusE"
                     /locus_tag="OQQ76_001149"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusE"
                     /protein_id="HCS1967721.1"
                     /translation="MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW
                     EVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL
                     PKPVKCI"
     gene            complement(9354..10013)
                     /gene="yccA"
                     /locus_tag="OQQ76_001150"
     CDS             complement(9354..10013)
                     /gene="yccA"
                     /locus_tag="OQQ76_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000375124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease modulator YccA"
                     /protein_id="HCS1967722.1"
                     /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV
                     LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM
                     GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
                     HLAISAVFILISSGAILFETSNIVHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR
                     D"
     gene            complement(10220..10307)
                     /locus_tag="OQQ76_001151"
     tRNA            complement(10220..10307)
                     /locus_tag="OQQ76_001151"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10271..10273),aa:Ser,seq:tga)
     gene            10734..11852
                     /gene="hyaA"
                     /locus_tag="OQQ76_001152"
     CDS             10734..11852
                     /gene="hyaA"
                     /locus_tag="OQQ76_001152"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 small subunit"
                     /protein_id="HCS1967723.1"
                     /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW
                     ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE
                     EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC
                     ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD
                     RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS
                     STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV
                     VAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA"
     gene            11849..13642
                     /gene="hyaB"
                     /locus_tag="OQQ76_001153"
     CDS             11849..13642
                     /gene="hyaB"
                     /locus_tag="OQQ76_001153"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase large subunit"
                     /protein_id="HCS1967724.1"
                     /translation="MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVIT
                     NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDN
                     ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP
                     GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVK
                     IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI
                     PDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMLGGAVINGDFNNV
                     LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ
                     ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG
                     RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP
                     RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI
                     LRTLHSFDPCLACSTHVLGDDGSELISVQVR"
     gene            13661..14368
                     /gene="hyaC"
                     /locus_tag="OQQ76_001154"
     CDS             13661..14368
                     /gene="hyaC"
                     /locus_tag="OQQ76_001154"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase b-type cytochrome subunit"
                     /protein_id="HCS1967725.1"
                     /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP
                     SVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW
                     QGVWYEIRWYLFLAKRPSANIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF
                     APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMV
                     NGYRSHKFGKISNKECS"
     gene            14365..14952
                     /locus_tag="OQQ76_001155"
     CDS             14365..14952
                     /locus_tag="OQQ76_001155"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 maturation protease"
                     /protein_id="HCS1967726.1"
                     /translation="MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG
                     GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE
                     VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLLAAEQSALAQLAAWGSVP
                     QPANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG"
     gene            14949..15347
                     /gene="hyaE"
                     /locus_tag="OQQ76_001156"
     CDS             14949..15347
                     /gene="hyaE"
                     /locus_tag="OQQ76_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-1 operon protein HyaE"
                     /protein_id="HCS1967727.1"
                     /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD
                     PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGVFRFPTTLVFTGGN
                     YRGVLNGIHPWAELINLMRGLVEPQQERAS"
     gene            15344..16201
                     /locus_tag="OQQ76_001157"
     CDS             15344..16201
                     /locus_tag="OQQ76_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein"
                     /protein_id="HCS1967728.1"
                     /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA
                     HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA
                     DDSKSEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP
                     IDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG
                     YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC
                     QWLAEAAPT"
     gene            16335..17879
                     /gene="appC"
                     /locus_tag="OQQ76_001158"
     CDS             16335..17879
                     /gene="appC"
                     /locus_tag="OQQ76_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit 1"
                     /protein_id="HCS1967729.1"
                     /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG
                     KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWAFYSNYVGDIFGAPLAMEALM
                     AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD
                     IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALR
                     SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE
                     QDQERNAFAIKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG
                     NREPHVLQAFRELEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI
                     MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP
                     WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ
                     PTQQQG"
     gene            17891..19027
                     /gene="appB"
                     /locus_tag="OQQ76_001159"
     CDS             17891..19027
                     /gene="appB"
                     /locus_tag="OQQ76_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1967730.1"
                     /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD
                     ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL
                     AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS
                     FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLA
                     GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL
                     LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSSSSQL
                     TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY"
     gene            19040..19132
                     /gene="cbdX"
                     /locus_tag="OQQ76_001160"
     CDS             19040..19132
                     /gene="cbdX"
                     /locus_tag="OQQ76_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit CbdX"
                     /protein_id="HCS1967731.1"
                     /translation="MWYLLWFVGILLMCSLSTLVLVWLDPRLKS"
     gene            19212..20510
                     /gene="appA"
                     /locus_tag="OQQ76_001161"
     CDS             19212..20510
                     /gene="appA"
                     /locus_tag="OQQ76_001161"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acid phosphatase/4-phytase"
                     /protein_id="HCS1967732.1"
                     /translation="MKAILIPFLSLLIPLTSQSAFAQSEPELKLESVVIVSRHGVRAP
                     TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYFGHYQRQRLVADGLLAKKGCPQP
                     GQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA
                     NVTDAILSKAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPS
                     ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF
                     YLLQRTPEVARSRATPLLDLIMAALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG
                     ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT
                     PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL"
     gene            complement(20625..22805)
                     /gene="etk"
                     /locus_tag="OQQ76_001162"
     CDS             complement(20625..22805)
                     /gene="etk"
                     /locus_tag="OQQ76_001162"
                     /EC_number="2.7.10.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HCS1967733.1"
                     /translation="MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLI
                     AVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGK
                     TIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN
                     GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQPTELEAINALQETF
                     TVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQL
                     PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY
                     KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNR
                     QQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR
                     RGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPA
                     DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVITQSDQKVLFI
                     DADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL
                     LMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVS
                     LSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE"
     gene            complement(22825..23271)
                     /gene="etp"
                     /locus_tag="OQQ76_001163"
                     /gene_synonym="yccY"
     CDS             complement(22825..23271)
                     /gene="etp"
                     /locus_tag="OQQ76_001163"
                     /gene_synonym="yccY"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase Etp"
                     /protein_id="HCS1967734.1"
                     /translation="MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL
                     VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVR
                     GKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR"
     gene            complement(23259..24398)
                     /locus_tag="OQQ76_001164"
     CDS             complement(23259..24398)
                     /locus_tag="OQQ76_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HCS1967735.1"
                     /translation="MKKNIFKFSILTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQY
                     DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE
                     LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
                     VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN
                     GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM
                     TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL
                     EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN"
     gene            complement(24444..26540)
                     /locus_tag="OQQ76_001165"
     CDS             complement(24444..26540)
                     /locus_tag="OQQ76_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS1967736.1"
                     /translation="MKKNYYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ
                     MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD
                     QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
                     WGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL
                     RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN
                     FNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMS
                     GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG
                     TAPGQSEQLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL
                     MPSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN
                     NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYVKQRDWD
                     NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVG
                     VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK
                     YQLYPMTAEREVPVGQ"
     gene            complement(26540..27286)
                     /locus_tag="OQQ76_001166"
     CDS             complement(26540..27286)
                     /locus_tag="OQQ76_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HCS1967737.1"
                     /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPMEN
                     VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEANDDVAATIKS
                     VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
                     QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQL
                     WLGFSAHVLPEKYADLNDQIVSVLTQRVPD"
     gene            complement(27283..27927)
                     /gene="gfcB"
                     /locus_tag="OQQ76_001167"
     CDS             complement(27283..27927)
                     /gene="gfcB"
                     /locus_tag="OQQ76_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein GfcB"
                     /protein_id="HCS1967738.1"
                     /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQI
                     QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL
                     EVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
                     LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP"
     gene            complement(28034..28339)
                     /locus_tag="OQQ76_001168"
     CDS             complement(28034..28339)
                     /locus_tag="OQQ76_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-rich inner membrane protein GfcA"
                     /protein_id="HCS1967739.1"
                     /translation="MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTG
                     ATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR"
     gene            complement(28781..28993)
                     /gene="cspH"
                     /locus_tag="OQQ76_001169"
     CDS             complement(28781..28993)
                     /gene="cspH"
                     /locus_tag="OQQ76_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspH"
                     /protein_id="HCS1967740.1"
                     /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV
                     LIPGLRVEFCRVNGLRGPTAANVYLS"
     gene            29279..29491
                     /gene="cspG"
                     /locus_tag="OQQ76_001170"
     CDS             29279..29491
                     /gene="cspG"
                     /locus_tag="OQQ76_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspG"
                     /protein_id="HCS1967741.1"
                     /translation="MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRT
                     LNENQKVEFSIEQGQRGPAAANVVTL"
     gene            29502..29690
                     /locus_tag="OQQ76_001171"
     CDS             29502..29690
                     /locus_tag="OQQ76_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1967742.1"
                     /translation="MTQHLHFRCPCCHGSQYRTSAFDVTERNPLGAKCIFCKSTMITF
                     DNVALQIRTDHAPLDFTK"
BASE COUNT         7231 a         7534 c         7786 g         7154 t
ORIGIN      
        1 gaaatcaact gaagctggtg cgtctgtcga aatattctct cgatgcagcg ctgaaagaga
       61 aaagcacgcg caatacccgg gaaagactga aagatttgcc caatatgtct tttcatctgg
      121 aagcgattct cggggaggtg gggattaagg atgtacgggc gttacgtata cttggggcaa
      181 aaatgtgttg gttgcgactg cggcagcaaa acagtctggt gacagaaaag attctgttta
      241 tgcttgaagg tgccattatc ggcattcatg aagctgcgct cccggtggca cgccgccagg
      301 agcttgcaga atgggctgac tcacttacgc cgaaacagga gtttcctgcg gaacttgagt
      361 aatctggcgt tgcagacgac caatctcagg cagtaatgca atcaataatc caacttgttg
      421 tacgaccaga ggttctttgc tgtctgcccg tggttcaagt tgctgcatcc gctgtttcag
      481 gctagctaat gcctcattga cgcgttcttc atcagcaggt tgatgatgta acgcgtcatc
      541 aacatagcaa actgcgtcat caagaaacgc cagaatttca ggattagtta actgctcccg
      601 gtgagcaccg agagctgaga tatagctggt aaacgtatgg ttaaggcaca gcaaccgaaa
      661 cgcggcttcg cgaatttgcg gggtaacgtt cggctcgctg gacatatttg ataccaccga
      721 cgccagctca gcatcacggt tgtgtgcatc gcggcgggca atacgatacg ccagacggtt
      781 atcacgcccc tgatggtatt gctccagtat ggcatcgaga taccgacagt tggcctctgt
      841 ggcgcgttcg agcatgcgcg gcagattgcg aaactgccag tcaggccaga tgtagctcac
      901 tgccgcccac gcaatggcac aaccaatcag cgtatcgatt acgcgaggta acgctacttc
      961 aaaaccttca cccagtaagt taaaacacag tagcaccaaa agtgtgatga acatcgttgc
     1021 atgagcgtat tgcacgttac ggaaggcaaa aaagagcacg ccggtaataa ccagcagcac
     1081 cagctgccct tccagtgatg gcacaaacca cagcacagga atgccaatgg cgatacctac
     1141 cagcgtacca ataatcctta acttcaggcg gtggcgcgtg gcgttatagt ttggctggca
     1201 gacaaacaaa cttgtcagca agatccaaaa cccgtgatgc attccggtta tttgaatgat
     1261 ggcgtagccg aagcacaaca ccagcgacat tcttaccgca tgacggaaga gggcggattc
     1321 cggcgtgaag tgacggctaa gacgcagcca gatatcactc aacccgtgcg ggctgtcatc
     1381 agcgagctca ttttcgtcat tattatgggg tagtgcctgg gcctgttctg attcaattgt
     1441 tgccagttgg gcatcaatgg cgcgtaaatt gttcagcaaa aatcccagtg ttttgagtaa
     1501 atcggcgggt gcgccgttat cgcgcatccg ctccagcgca gcatcaatat gcgtaaaagc
     1561 gcgctcaaaa tgcggatcat gttgataagg ctgacgcaac aaaatacagc gtgacagttg
     1621 ctggcacgcc tggccctgca tcgacatcag ccgctgaaaa cggaacagca cgtcgctgtg
     1681 gcgaaaatgt tcacgcaatg tttgatactg aatatgagaa gagctggcac gctcgtgaat
     1741 atcctgtgcg acaaagtaat aatgcagcgt gcgacgcgtt ccccgttgac cacgatcgcc
     1801 acgtaagcgg gtcagcagcg agagtttcgt ctgattcaat gtcgccatca gcagaccgtt
     1861 ggcgagagcc aaatcgtaca gcggtgcctg gctttcatct tcaatatcag gatcaaacat
     1921 gcgcgacttg agctcaagat aacgcgccag ttgttcatag caacgcgcca ggttgtcctg
     1981 cagcgggcgg accgggaaca gcagatgacc aataagtgtc aggacgttgt accagacggc
     2041 accggccagc agatacatcg gctgctgata ccagtgctca tacagtgatg ttcccaacat
     2101 agtgtaaatg gcgatcagca atgcaccgaa ggcaattgtt gcatagcgtt gacccagacc
     2161 gccgagcaaa atgaagccgc tggtagagag cgttaagcca atcgcaaata gccagggcca
     2221 gggaaacagc aattctactg aggccgaggc gataaaaaag cagaacagcg taatgatgag
     2281 gttacgcaaa cgtcccgcca gtcggtcatc gagatcggtc agcgccgctg ccaccatccc
     2341 cagcgttagc ggaatcgtca gttttacatc acccagccac cacggaaacg ctgtggttcc
     2401 acaaagcgca ataaaaatac gcgcgtaata cagccaggcg ctgttccagg tatagcgttt
     2461 gagcaaagga cttagcataa aggccatatt agtggattat tcaaaacgac gacgtgcatt
     2521 ggcttcacgc gcagcttgcg ctgtttctac cgataccacg cgacgaccaa ccggccatag
     2581 tgcaatagcg gcaattttaa agttcgcaat gccgacagga atgccaatga ttgaaataca
     2641 ttgtgcgatg cccgttgcaa tgtgcatcag gcataaccac cagccaaaga aaatcagcca
     2701 gaaaatattc aataccgtac cgccagtatt cagcagcaca tttttgccag ccgggttcag
     2761 ttcatcgaca tgaatagctt cattgccata aggcaccaga gacagtttag tgatctccca
     2821 gcaggatcgt gtcagcggta aggtaaaaat cagcacaata ctgaccagag tcgccaacag
     2881 ccagcccaga gtggtggcaa atccgccaag cacaaagttc agaatgttca aaacggtacg
     2941 cataaaacct cgctttactg tggttttcag taatgggcgg caattgtaac gttttttggg
     3001 gctggagcac gttttctctg acggttacac tgataagaaa taatttcgtg tggatctaca
     3061 gagtcatgga actgaaagcg acaacgcttg gaaaacgtct ggcacagcac ccttacgatc
     3121 gggcggtgat cctcaatgcc gggattaaag tctccggcga tcgccacgaa taccttattc
     3181 ctttcaatca attactggcg attcactgta agcgtggtct ggtatggggc gagctggaat
     3241 ttgtactgcc ggacgaaaaa gtggtgcgtc tgcacggcac cgaatggggc gagacgcagc
     3301 gtttttacca tcatcttgat gctcactggc ggcggtggag tggcgagatg agcgaaattg
     3361 cgtctggtgt tttacgccag caactggatt tgattgccac gcgcactgga gaaaataaat
     3421 ggctgacgcg tgagcaaacc tctggcgttc agcaacaaat ccgccaggct ttgtcggcgt
     3481 tgccgttgcc ggttaaccga ctggaagaat tcgataactg ccgtgaggcg tggcgtaaat
     3541 gtcaggcctg gttgaaagat attgaaagcg ctcggttgca gcataaccag gcgtataccg
     3601 aagccatgct taccgagtat gcggattttt tccgccaggt cgagtcttca ccgctgaatc
     3661 cggcgcaggc ccgggcagtc gttaatggcg agcattctct gttagtgctg gcaggtgcag
     3721 gaagcggaaa aacgtcggtg ctggtggccc gtgcaggctg gttgctggca cgtggtgaag
     3781 cgtcccctga gcaaatttta ttgctggcgt ttggtcgcaa agccgctgaa gagatggacg
     3841 agcggattcg cgaacggcta cataccgaag acattaccgc acgcacgttt catgcgctgg
     3901 cgctgcatat tattcagcag ggcagcaaaa aagttccgat agtcagcaaa ctggaaaatg
     3961 ataccgctgc ccgtcatgaa ctctttattg ctgagtggcg caagcaatgc agcgaaaaga
     4021 aagcgcaggc gaagggctgg cggcaatggc tgacggaaga aatgcagtgg tcagtgccag
     4081 aaggtaactt ctgggatgat gaaaaattac agcgtcgcct tgcctctcgc ctcgatcgct
     4141 gggtaagtct gatgcggatg cacggtggtg cacaggcaga aatgattgcc agtgcacccg
     4201 aagagattcg cgatctgttc agtaaacgta tcaagttgat ggccccgtta ttaaaagcct
     4261 ggaaaggtgc gctgaaggca gaaaacgctg tcgatttttc gggccttatt catcaggcga
     4321 ttgtgattct ggagaaaggt cgctttatca gcccgtggaa gcatattctg gttgatgaat
     4381 ttcaggatat ctcgccgcag cgggcagcgt tgttagcggc attacgcaag caaaacagtc
     4441 agacgacgtt gttcgctgtt ggtgatgact ggcaggcgat ttaccgattc agcggtgcgc
     4501 aaatgtcgct caccaccgct ttccatgaaa actttggtga aggcgaacgt tgtgatttag
     4561 acacgactta ccgttttaac agtcgtatcg gtaaggtggc aaaccgtttt attcagcaga
     4621 acccaggcca gctgaaaaag ccgctaaaca gcttaaccaa tggagacaaa aaagccgtca
     4681 cgttattgga tgagagtcaa cttgacgctt tgctggataa gctctctggt tatgccaaac
     4741 cggaagagcg cattctgatc ctggcgcgtt accatcacat gaggcctgcc agcctggaaa
     4801 aagcggcaac acgctggccg aagttgcaaa tcgactttat gaccattcat gccagcaaag
     4861 ggcaacaggc tgattacgtc atcatcgttg gcttgcagga gggaagtgat ggttttccgg
     4921 ctgcggcgcg ggagtcgatt atggaagagg cgctactgcc accggttgag gatttcccgg
     4981 acgctgaaga acggcggtta atgtacgtgg cgctgacccg ggcacgccat cgggtatggg
     5041 cactgtttaa caaagagaat ccctctccct ttgttgaaat actgaaaaat ctggatgtgc
     5101 cggtggcgag aaaaccgtaa gaaacaggtg gcgtttgcca cctgtgcaat attacttcag
     5161 acggtccgcg agataacgct gataatcggg gatcagaata tcgaccgcgt cgttgaaatg
     5221 cggcgactgg attatgaagt ctgccgttgc cacgttggtg gcgaccggaa tgttccatac
     5281 cgtcgccaga cgcagcaagg ctttcacgtc aggatcgtgc ggcacggcat ttagtggatc
     5341 ccagaagaaa atcaatacat caattttccc ttctgagatc aatgcgccaa cctgctggtc
     5401 accccccatt gggccactca acatcgcgtt gacgttcatg ccggtcgcgc gggaaattaa
     5461 gttaccggta gtgcctgttg catacagtac gtgttgttcc agtaacggtt gatgccgttc
     5521 cacccagctc atcagcattt gtttgcagtg atcgtgtgcc accagcgcaa tatgtttccg
     5581 cgcaggtaaa gtgcgagtcg tcagttccat aatgtacatc cgtagtcaac tttcctacag
     5641 attactgtaa gcacttatcg ctgcaagata aagaccgaaa aagcctgcgc acaggcacaa
     5701 aaatctcagg aagatggttg tttttccgcc cactgcagga aagtatttcg cgtttgtggg
     5761 tcagccagtt taaaccaata cttcagccgt tgttctgtga gcacctgaga ctgcggtgga
     5821 atagcatcca gctcggaaac acccgaaagc agcgtactgt catctgccat catcgtggca
     5881 aattgcggta gtgaagcgcg tttcgcggat ttgttatagc gttcaacctc gacctcataa
     5941 tcaatcgttt ttgccgttga ggtaatggcg agaatatcca gctttaccgg aatcggcgtc
     6001 gcatcgccat ccaacaattc aaggcgcggc gcggcatcaa aatggttagc ttcccgctca
     6061 ttctccaggc gaggcaggcg aaaattgacc tggttgatga gctgggtatt aaaactgacc
     6121 accagcggtg gggagatata cagccgttct tcactattgg aaagatgaat cgtcttctca
     6181 acgcgaaaca ctaactgatg cggtccatta tccagttcaa tgctgtccgc accgcgtagc
     6241 agagagctgg aaaccttctt gccgtcgagt accagaagat cgacatcggt tgaaagccgc
     6301 agcgtggtgg caaaaacgga taccggcaaa cataatgcaa tcaaggtggt cacgatgccg
     6361 gttttcatag gtagctcctg tcaaaagacc gcccgaataa taatgtgtca aaatttttct
     6421 ttaatcatac ttactaacat atagacatat ttcccgcttt tgctctcatt cattcgtatt
     6481 agctgcatgg ttggcatgtc ggctttgtcg tacactttgt taaacagtct ggaggaaata
     6541 atgaaagaaa ccgatattgc aggcatttta acgtccactc acaccattgc gctggtgggg
     6601 gcaagcgaca aacccgatcg tcccagctat cgcgtgatga aatatctact cgaccagggg
     6661 tatcatgtca ttccggtttc gccaaaagtt gccggcaaaa cgctgctggg ccagcagggg
     6721 tatggcacgc tggcagacgt tccggaaaag gtcgatatgg tcgatgtttt ccgtaattca
     6781 gaagcggcgt ggggcgtggc acaggaagct attgccattg gcgcgaaaac cctctggatg
     6841 caactggggg tgattaatga gcaagcggca gtactggcac gggatgccgg gttgaatgtg
     6901 gtgatggatc gctgcccggc tattgagatc cctcgcctgg gcctggccaa ataaaaaatc
     6961 cccggaaggc aaaaaccttc cggggattcg ttcagggatc agttacgcag acgcggggcc
     7021 tggagttgtt tgcggatggt ctgcgccagc tcatccatgg atggctgttc aggatgttca
     7081 tcctgcaatt cgctacttag ctgggcttca gctaggtagg tatgaaccgg taggccgtta
     7141 tcgtcctcca tcactacgtg ataccacgga gcggcgcgaa gctcgtcatt taccgccagc
     7201 tcatcaggcg acggttcaga gagcgaataa accgggtcga tatccacgac cactccgaga
     7261 taacctaaca gggaatggcg gacctgctgg ccgataccga atttgctggc aatcatagtc
     7321 acctcccggg aaatctttac ctttgatata agggtaaaat tccacatttc aagttacatg
     7381 acgcgacagg caaacccttt cagatatagc ccttccggat aggtagcgat caccggatga
     7441 tcggctgcct gacggaactg ctctataaat tgtacatcac ggccggcatc aattgcggca
     7501 tccgcgatga ttttctgaaa taaatcgctg gtcatcagac cggaacagga gaaagtcagg
     7561 agaataccgc cttcattcag caactgaatc gccagcatgt tgatatcttt atagccacga
     7621 cacgcgccca tcaactggct tttattctca acaaacttcg gcgggtccat cacgataacg
     7681 tcaaattttt caccgcgatc gcgataagta cgcagcaatt taaagacatc atcacggaca
     7741 aactcagcct tgctcagatc cagtttgttc agctcaacgt tctgccgtgc aatatccagc
     7801 gcttcctggg aggtatcaac gctgacaacc tggctgcaac cgcccatcag tgccgatacg
     7861 gcgaaaccac cggtatagga gaaacagttc agcacacgtt tattttcaac gtagcggcgg
     7921 gtagccaggc ggctgtctcg ctggtccagg tagtagcccg ttttgtgccc gtgctgaata
     7981 tccaccagca gcttcatgcc gtgttcttca atcggcagca gggcaggcgg caactcgccg
     8041 gtgacgaggc ccagggtcag ctccatccct tcttttttac gtaccgcaac atcgctgcga
     8101 tcgtaaatcg cacattccgg gtacagcgtt tgcagggcac taactaatgc cgcgcgctga
     8161 tattctgccc cagcactcag cagttgcagc accagaaaat taccgaaacg atcgatagta
     8221 atacccggca ggccatcaga ttctccggcg attaaacgat agctgtcgag gccatctttt
     8281 tgcgccagcc agtcacgcca tttttgtgct tgttgcaaac ggcgggaaaa aaaagcaatg
     8341 tcgatagact cagacgggtc aaacgtccag acgcgcgccc ggatttgcga agctggcgaa
     8401 taagcgccgc gtgctaacca ttttccctga tgatcaacaa tatcgatggt ttcaccgagg
     8461 ctggctttac cttccatgcg ggcaacggtc ccggaaaaga cccacggatg gcgacgaagt
     8521 aatgattttt cgcgcccttt ggctaacact aaacgtacac tcataattta cttttctgtc
     8581 gatgcaaaga aatgggcgtc attgtccgga gttttccatg gatttgcaac gcgtccatta
     8641 aggataagga gagcagcaat gtcgaaagtc tgcataattg cctgggttta cgggcgagtt
     8701 cagggcgtag gatttcgcta caccacacag tacgaagcga aaagactggg tttaaccggg
     8761 tacgccaaaa atcttgacga tggcagcgtg gaagtggttg cctgcggtga agaagggcag
     8821 gtggaaaaat taatgcagtg gttaaagagt ggcagcccgc gttctgcgcg tgtagaacgg
     8881 gtgctcagcg agccgcatca tccctcgggg gaattaaccg attttcgtat ccgttaaata
     8941 cattttaccg gttttggcag gccagcaatt ttggtggctt gcttagccgg acctttcgga
     9001 aacagtcggt ataaatagcg gctgttacct ttttcttcgc caaatttatt cgccatcgct
     9061 tttaccagca tacgaatcgc cggagaagta ttgaattcca gatagaaatc acgcacaaaa
     9121 cgcaccactt cccagtgttc cggtgacagc gaaatccctt cgttctctgc aatcaccact
     9181 gccagcggct cactccactg gctgctttct ttgagatagc cttcggtatc cgtttctatc
     9241 tctttacctt cgaagatcag cataattatt actaccttaa tcagactggc ggcagtgtaa
     9301 caaaaaacaa agccccgcat aaagcgaggc tatgaaagtg ttagcgggtg agattaatcg
     9361 cggctggcga agcccagaat gctcagcagg ctgacgaaga tgttgtacag cgaaacatac
     9421 aggctaaccg tggcacgaat atagttcgtt tcaccgccat gaacgatgtt gctggtttca
     9481 aacaaaatag cgccagagga gatcaaaatg aagaccgcgc tgatcgccag atgcagagca
     9541 ggcagctgca ggaagatatt agcaaccata ccaatcagca ccaccacaat acccgccatc
     9601 agcataccgc cgaggaacga catatctttg cgggtggtca gcacatatgc agagcagcag
     9661 aagaacacta acgccgttcc gcccagtgcc atagcgatta cgtcacccat tccggcagac
     9721 agataggtgt tcagaatagg tccgaggata taacccagaa aaccggtaaa ggcgaatgcg
     9781 gagataatcc cggtcggctt attcgccgtt ttataggtca ggaacatcaa accatacata
     9841 cccaccagcg tcagaatcag acccggagat ggcagcatca gcaccgtact ggcagttgcg
     9901 gtaatcgccg aaaaggccag cgtcaggctc agcagaaaat aggtattacg cagcacctta
     9961 tgggtgctaa gcagtgatgt acggtcatgt gaagaactaa caatacgatc cattgagtca
    10021 ctctctatga cagatgtaat taattaagca gcataatgat aatgcgtaag ggcacccaga
    10081 agttttaccc atctttacgc atttgatctg gaacaggttt aacagcggat tatcaggtca
    10141 ttaagcaaat ataacgccct gagaatttcg acaggcaaaa gaaaaagggg ttagcattta
    10201 gctaacccct tatcttattt ggcggaagcg cagagattcg aactctggaa ccctttcggg
    10261 tcgccggttt tcaagaccgg tgccttcaac cgctcggcca cacttccgga ataacgcgca
    10321 ctataaacat cccgatgcgg cgtgtaaacc cctaatttgt ttgtttgcct aaaaaacagc
    10381 caaaagtgca ttgatagcgt gaaataacag cagattgatc atttcatcac catgaattcc
    10441 ttctctttta ctcgtttagc aaccggctaa acatccccac cgcccggcaa aaagaaaaat
    10501 aggtccattt ttatcgctaa aagataaatc cacacagttt gtattgtttt gtgcaaaagt
    10561 ttcactacgc tttattaaca atactttctg gcgacgtgcg ccagtgcaga aggatgagct
    10621 ttcgttttca gcatctcacg tgaagcgatg gtttgccttg ctacagggac gtcgcttgcc
    10681 gaccataagc gcccggtgtc ctgccggtgt cgcaaggaga agagacgtgc gatatgaata
    10741 acgaggaaac attttaccag gccatgcggc gtcagggcgt tacccggcgc agctttctca
    10801 aatattgtag tctggctgcc acgtcgctgg gattaggcgc gggaatggca ccaaagattg
    10861 cctgggcgct ggagaacaaa ccccgcattc cggtggtatg gatccacggt ctggaatgca
    10921 cctgctgtac cgaatctttt atccgctccg ctcacccact ggcgaaggac gtcatccttt
    10981 ccctgatttc cctcgattat gacgatactt tgatggctgc cgccggaacc caggcggaag
    11041 aagtcttcga agacatcatc acgcaataca atggcaaata tatcctcgca gtagaaggta
    11101 atccgccgct gggcgagcag gggatgttct gtatcagcag cggtcgaccg tttattgaga
    11161 aactcaaacg tgccgctgcc ggagccagcg cgattatcgc ctggggaacc tgcgcgtcct
    11221 ggggctgcgt gcaggccgcg cggcccaatc cgacgcaggc aacgcctatc gacaaagtca
    11281 tcaccgacaa acccattatc aaagtacctg gctgcccgcc gatcccggat gtgatgagcg
    11341 ccatcattac ttacatggtg acctttgatc gcttgccaga tgtcgacaga atgggccgtc
    11401 cgctgatgtt ctatggtcag cgaatccacg ataaatgcta tcgccgcgcc cacttcgacg
    11461 ccggagagtt cgtccagagt tgggatgatg acgctgcccg caaaggttac tgcctgtaca
    11521 aaatgggctg caaagggcct accacctata acgcctgttc ctccacacgc tggaatgatg
    11581 gcgtttcttt cccaatccag tctggtcacg gctgcctggg ctgtgcggaa aatggtttct
    11641 gggatcgcgg ttcgttctac agccgcgtgg tcgatattcc gcaaatgggt actcattcca
    11701 ccgccgatac cgtcggttta accgcgcttg gcgtggtggc agcggctgtt ggtgtgcacg
    11761 cagtcgccag cgccgttgac cagcgcagac gtcataacca gcaacctaca gaaaccgaac
    11821 atcagccagg caatgaggat aaacaggcat gagcactcag tacgaaactc agggatacac
    11881 catcaataat gccggacgcc gcctggtggt cgacccgatt acgcgcatcg aaggccacat
    11941 gcgctgcgaa gtgaatatta acgatcagaa tgtgatcacc aatgccgtct cctgcggcac
    12001 catgtttcgc gggctggaga tcatcctaca agggcgcgac ccgcgcgatg cgtgggcgtt
    12061 cgttgaacgt atctgcggcg tctgtactgg cgtacacgcc ctggcttcgg tttacgccat
    12121 cgaagatgct atcggtatta aagtgccgga caacgccaat atcatccgca acattatgct
    12181 ggcaacgctc tggtgccacg atcatctggt gcacttctat cagcttgccg ggatggactg
    12241 gatcgatgtg ttagatgcgc tgaaagccga cccgcggaaa acctccgaac tggcgcaaag
    12301 tctctcctct tggccgaaat catcccctgg ctatttcttc gacgtacaaa accgcctgaa
    12361 aaaatttgtt gaaggcgggc agttggggat cttccgcaat ggctactggg ggcacccgca
    12421 gtacaaactg ccgccagaag ctaacctgat gggctttgcc cactatctcg aagctctcga
    12481 tttccagcgt gaaattgtca aaatccacgc ggtctttggc ggtaaaaacc cgcatccaaa
    12541 ctggattgtc ggcgggatgc cttgcgccat caacattgac gaaagcggcg cggtcggggc
    12601 agtcaatatg gaacgcctga acctggtgca gtcaattatc acccgcacgg cggacttcat
    12661 taacaacgtg atgatccccg acgccttagc catcggtcag ttcaacaaac cgtggagcga
    12721 aatcggcact ggtctttctg ataaatgcgt tctcagctac ggcgcattcc cggatattgc
    12781 caacgacttt ggcgagaaaa gtctgctgat gcttggcggc gcggtgatta acggcgactt
    12841 caacaatgtg ctgccagtgg atttggttga tccgcagcag gtgcaggagt ttgtcgacca
    12901 cgcctggtat cgatatccca acgatcaggt cgggcgtcat ccgttcgatg gcatcaccga
    12961 cccgtggtac aaccccggcg atgtcaaagg cagcgatacc aacattcagc agctgaatga
    13021 acaggaacgc tactcgtgga tcaaagcgcc acgctggcgc ggtaacgcga tggaagtggg
    13081 gccgctggcg cgcacgttaa tcgcttatca caaaggcgat gctgcgaccg ttgagtcggt
    13141 cgatcgcatg atgtcggcgt tgaacctgcc gctttccggt atccagtcaa cgttaggccg
    13201 cattttgtgc cgcgcgcacg aagcgcagtg ggccgcaggt aagttgcagt atttcttcga
    13261 caagctgatg accaacctga aaaacggcaa tctcgccact gcttccacgg aaaaatggga
    13321 acctgcaacc tggccgacag agtgccgtgg tgtcggtttt accgaagcgc cgcgcggggc
    13381 gttaggccac tgggccgcca ttcgcgatgg caagattgat ctctaccagt gcgtggtgcc
    13441 gaccacctgg aacgccagcc cgcgcgatcc caaagggcag attggcgctt atgaagcggc
    13501 gctgatgaac accaaaatgg cgatccccga gcaaccgctg gagatcctgc gtactctgca
    13561 cagctttgac ccgtgcctcg cctgttcaac acacgtgctg ggcgacgacg gtagcgagct
    13621 gatctccgtg caggtgcgtt aacagcgaag gagaatcatc atgcaacaga aaagcgacaa
    13681 cgttgtcagc cactatgtct ttgaagcgcc agtccgcatc tggcactggt tgacggtgtt
    13741 atgcatggcg gtgttgatgg tcaccggata ctttatcggc aagccgctac cttccgtcag
    13801 cggcgaggcg acgtatctgt tctatatggg ctacatcagg ttaattcact tcagcgccgg
    13861 gatggttttt accgtggttt tgctgatgcg gatctactgg gcttttgttg gcaatcgata
    13921 ctcccgcgag ctgtttatcg tgccggtatg gcgtaaaagc tggtggcagg gcgtgtggta
    13981 tgaaatccgc tggtatctgt ttctggcaaa acgtccgagt gccaatatag gccataatcc
    14041 catcgcccag gcggcgatgt tcggctattt cctgatgtcg gtctttatga tcatcactgg
    14101 ttttgcgctg tacagcgaac acagccagta cgctattttt gcgccgttcc gttatgtggt
    14161 ggaatttttc tactggacgg gtggcaactc aatggacatt cacagctggc atcggctggg
    14221 gatgtggctg attggcgcgt ttgtgatcgg tcatgtctac atggcgctgc gtgaagacat
    14281 catgtccgac gacacggtga tctccaccat ggtcaacggc taccgtagcc acaaatttgg
    14341 caaaataagt aacaaggagt gttcatgagc gagcaacgcg tggtggtcat ggggctgggc
    14401 aacctgctgt gggccgatga aggcttcggc gtgcgggtgg cggaacggct gtatgcccat
    14461 taccactggc ccgagtatgt ggagattgtc gatggcggta ctcagggact gaacttgctg
    14521 gggtatgtcg aaagcgccag ccatctgttg attctcgatg ccattgacta cgggctggaa
    14581 cctggaacgc tgcgaaccta tgccggagaa cgcattccgg cttatctcag cgcgaagaaa
    14641 atgagcctgc atcagaacag tttctccgaa gtgctggcgc tggcagatat ccgcggacat
    14701 ctgccagcac atattgccct cgtcgggctg caacccgcga tgctcgacga ctacggcggc
    14761 agtctgagcg aactggcacg ggagcaactg ctcgctgcgg aacaatcggc tctggcgcag
    14821 ttggctgcgt ggggaagtgt gccgcaaccg gctaatgaat cgcgttgtct caattatgac
    14881 tgtctgtcga tggaaaatta cgaaggcgtt cgcttgcgcc agtaccggat gacacaggag
    14941 gagcagggat gagcaacgac acgccatttg atgcgttgtg gcaacgaatg ctggcgcgcg
    15001 gctggacgcc ggtcagtgaa tcccgtcttg acgactggct tacgcaagcg ccagacggcg
    15061 tggtgttatt aagcagtgac ccgaaacgca cgccagaggt cagcgataat ccggtaatga
    15121 ttggcgaatt actgcacgag tttcccgact atacatggca ggtggcgatt gctgaccttg
    15181 agcagagcga agccatcggc gatcgctttg gcgtctttcg ctttcctacc actttagtgt
    15241 ttaccggcgg aaactatcgc ggcgtgctga atggtattca cccgtgggcg gaactgataa
    15301 acctgatgcg cgggcttgtc gaaccgcagc aggagcgtgc ctcatgagcg aaactttttt
    15361 ccatctgctg gggccaggaa cgcaaccgaa cgatgacagt ttcagcatga atccactgcc
    15421 gatcacctgt caggtgaatg atgaaccgag tatggcggcc ctggagcaat gtgctcacag
    15481 cccgcaggtg attgcgctgt taaacgagtt acaacatcaa ctaagcgaac gccagccgcc
    15541 gttgggcgag gtgctggcag tcgatctgtt aaatctcaac gccgacgatc gtcactttat
    15601 caatacgctt ctcggggaag gggaagtgtc agtgcgcatt cagcaggctg acgacagtaa
    15661 aagtgaaata caggaggcga tcttctgcgg attatggcgg gtgcgcagac gtcgcggcga
    15721 aaagttgctg gaggacaaac tggaggctgg ctgcgcgccg ctggcgttgt ggcaggcggc
    15781 aacgcaaaat ctcttgccga cagattcgct gttaccgccg cccattgatg gcctgatgaa
    15841 tggcctaccg ttggcgcatg agttactggc acatgtacgt aaccccgacg cgcagccgca
    15901 cagcattaat ctgacgcaat tacccatcag cgaggctgat cggctttttc tctcacgtct
    15961 ctgtgggccg ggaaatattc agattcgtac cattggctat ggcgagagct atatcaacgc
    16021 cacggggtta cgccatgtct ggcatttacg ctgtacggac accttaaaag gcccgttact
    16081 ggaaagttat gaaatctgcc caataccgga agtggtgctg gcagcgccag aagatttggt
    16141 cgactctgcg cagcggctta gcgaggtatg tcagtggctg gcggaagctg caccgacgta
    16201 aaaagacggt aagtatcgct ttcagtctta tgaatatcgc aatcggcgaa tacctctggt
    16261 cgtagagttt caggataaag agggagatct aacattatcg ggttattttt ctctcttcgc
    16321 ctacaggagt gcgcatgtgg gatgtcattg atttatcgcg ctggcagttt gctctgaccg
    16381 cgctgtatca ctttttattt gtacccctta ccctggggct gatttttttg ctggctatca
    16441 tggaaaccat ttacgtggtc accggcaaaa caatctaccg cgatatgacg cgcttctggg
    16501 gtaagctctt cggtatcaat tttgctcttg gcgtggctac cggcctgacc atggagtttc
    16561 agtttggtac taactgggca ttctattcca actatgtggg cgatattttt ggcgcaccgc
    16621 tggcgatgga agcattaatg gccttcttcc tcgaatccac ctttgtcggg cttttcttct
    16681 tcggctggca gcggctgaat aaataccagc acctgctggt gacgtggctg gtggcgttcg
    16741 gttcaaatct ctctgcattg tggatattga atgccaacgg ttggatgcaa tacccgaccg
    16801 gtgcgcattt tgatatcgac accctacgta tggagatgac cagcttcagc gagctggtct
    16861 ttaacccggt cagccaggtg aaatttgtgc acaccgtaat ggcgggctac gtgaccgggg
    16921 ccatgtttat tatggcgatc agcgcctggt atttactgcg cggacgggag cgcgatgttg
    16981 cattacgctc gtttgccatc ggttccgtct tcggtactct ggcgattatc ggcacgctac
    17041 aactcggaga cagttctgcg tatgaagtcg cgcaagtaca accggtaaaa ctggcggcga
    17101 tggaagggga gtggcaaacg gaacctgctc ctgcaccgtt ccatgtggtt gcctggccgg
    17161 aacaggatca agagcgtaac gcctttgcca tcaaaattcc cgcgctgtta gggatcctcg
    17221 ccactcactc attagataaa cccgtgccgg gtctgaagaa tttgatggct gaaacctacc
    17281 cacgcttgca acgcggacgt atggcctggc tgttaatgca ggaaatatcg caaggcaatc
    17341 gtgagccgca tgtgttgcag gcattccggg aactggaagg tgacctgggc tacggcatgt
    17401 tgctctcccg ctatgcgccg gatatgaatc atgtcacagc cgcacagtac caggcggcga
    17461 tgcgtggcgc gatacctcag gttgcgccgg tattctggag tttccgcatc atggtgggct
    17521 gtggttccct gctgctactg gtgatgctga ttgcgcttgt ccagacgctg cgtggcaaaa
    17581 tcgaccagca tcgctgggtg ctgaaaatgg cgctctggag tttgccgttg ccgtggattg
    17641 cgattgaagc cgggtggttt atgaccgagt ttggtcgtca gccgtgggcg atacaggaca
    17701 tcttaccgac atactccgcg cactccgctt taaccacagg acaactggct ttctcactga
    17761 tcatgatcgt agggctttac accctgttct taatcgccga agtctacctg atgcagaaat
    17821 atgcccgtct ggggccgagc gcgatgcaga gtgaacaacc gacgcagcaa caggggtaaa
    17881 ggagaaaatc atgtttgatt atgaaacatt gcgcttcatc tggtggctgc tgattggcgt
    17941 gatcctggtg gtctttatga tctccgacgg atttgacatg gggatcggct gtctgctgcc
    18001 gctggtggcg cgtaatgatg atgaacgccg gatagtgata aacagcgttg gtgcacactg
    18061 ggaaggcaac caggtctggt tgatcctcgc tggtggggca ttatttgccg cctggcccag
    18121 agtgtatgca gcggcgtttt ccggctttta tgtggcgatg atcctggtgc tgtgctcact
    18181 gttcttccgc ccgctggcct ttgattatcg cggaaaaatc gccgatgcac gctggcgtaa
    18241 aatgtgggac gccggtctgg tcatcggcag tctggtgccg ccggtagtct tcggtatcgc
    18301 cttcggcaac ttgttgctcg gcgtgccgtt tgccttcaca ccgcaattac gcgtggagta
    18361 tctcggcagc ttctggcaac tgctgacgcc attcccttta ttgtgcggat tgctcagcct
    18421 tgggatggtg attttgcaag gtggcgtctg gttacaactg aaaactgttg gtgtgattca
    18481 tctgcgttca cagctggcca ccaaacgcgc tgcactgttg gtgatgctgt gctttttgct
    18541 ggcgggttac tggctgtggg tcggtattga tggctttgta ctgctcgccc aggatgctaa
    18601 cggtccttcc aatccgttaa tgaaactggt ggcagtgcta cctggtgcct ggatgaataa
    18661 tttcgtcgaa tcgcccgttt tgtggatctt cccgctgctg gggttcttct gcccattgct
    18721 gacggtgatg gcgatttatc gtggtcgccc aggttgggga tttttaatgg cgtcattgat
    18781 gcaatttggc gtgattttca cggcaggcat cacgctgttc cccttcgtca tgccgtcaag
    18841 cgtgagtccg atctccagcc tgacgttgtg ggacagctct tccagccagc tgacgctgag
    18901 cattatgttg gtaatcgtgc tgatattttt gcccattgtg ttgctctaca ctctctggag
    18961 ctactacaaa atgtgggggc gcatgacaac agaaactctc cgccgtaacg aaaacgagtt
    19021 gtactaagga gcaggaacaa tgtggtattt actttggttc gtcggcattt tgttgatgtg
    19081 ttcgctctcc acccttgtgt tggtatggct ggacccgcgt ctgaaaagtt aacgaacgta
    19141 ggcctgatgc ggcgcattag catcgcatca ggcaatcaat aatgtcagat atgaaaagcg
    19201 gaaacatatc gatgaaagcg atcttaatcc catttttatc tcttctgatt ccgttaacct
    19261 cgcaatctgc attcgctcag agtgagccgg agctgaagct ggaaagtgtg gtgattgtca
    19321 gtcgtcatgg tgtgcgtgct ccaaccaagg ccacgcaact gatgcaggat gtcaccccag
    19381 acgcatggcc aacctggccg gtaaaactgg gttggctgac accgcgcggt ggtgagctaa
    19441 tcgcctattt cggacattac caacgccagc gtctggtggc cgacggattg ctggcaaaaa
    19501 agggctgtcc gcagcctggt caggtcgcga ttattgctga tgtcgacgag cgtacccgta
    19561 aaacaggcga agccttcgcc gccgggctgg cacctgactg tgcaataacc gtacataccc
    19621 aggcagatac gtccagtccc gatccgttat ttaatcctct aaaaactggc gtttgccaac
    19681 tggataatgc gaacgtgact gacgcgatcc tcagcaaggc aggagggtca attgctgact
    19741 ttaccgggca tcggcaaacg gcgtttcgcg aactggaacg ggtgcttaat tttccgcaat
    19801 caaacttgtg ccttaaacgt gagaaacagg acgaaagctg ttcattaacg caggcattac
    19861 catcggaact caaggtgagc gccgacaatg tctcattaac cggtgcggta agcctcgcat
    19921 caatgctgac ggagatattt ctcctgcaac aagcacaggg aatgccagag ccggggtggg
    19981 gaaggatcac cgattcacac cagtggaaca ccttgctaag tttgcataac gcgcaatttt
    20041 atttgctaca acgcacgcca gaggttgccc gcagccgcgc caccccgtta ttggatttga
    20101 tcatggcagc gttgacgccc catccaccgc aaaaacaggc gtatggtgtg acattaccca
    20161 cttcagtact gtttattgcc ggacacgata ctaatctggc aaatctcggc ggcgcactgg
    20221 agctcaactg gacgcttccc ggtcagccgg ataacacgcc gccaggtggt gaactggtgt
    20281 ttgaacgctg gcgtcggcta agcgataaca gccagtggat tcaggtttcg ctggtcttcc
    20341 agactttaca gcagatgcgt gataaaacgc cgctgtcatt aaatacgccg cccggagagg
    20401 tgaaactgac cctggcagga tgtgaagagc gaaatgcgca gggcatgtgt tcgttggcag
    20461 gttttacgca aatcgtgaat gaagcacgca taccggcgtg cagtttgtaa tgcataaaaa
    20521 agagcattca gttacctgaa tgctctgagg ctgatgacaa acgaagaact gtctaatgcg
    20581 tagaccggaa aaggcgttca cgccgcatcc ggccactttc agttttactc tttctcggag
    20641 taactataac cgtaatagtt atagccgtaa ctgtaagcgg tgctggcgcg tttaatcaca
    20701 ccattgagga tagcgccttt aatattgacg cctgcctgtt ccagacgctg cattgacaaa
    20761 ctcacctctt tggcggtgtt caagccaaaa cgcgcaacca gcaggctggt gccaacagaa
    20821 cgccccacga ccgcggcatc actcaccgcc agcatcggcg gcgtatcgac aatcaccaga
    20881 tcgtaatggt cgttcgccca ttccagtaat tgacgcatcc gatcgcgcat cagcagttca
    20941 gacgggttag gtggcacctg accgcgagta atcacatcaa agcctccttt gccaaaatgc
    21001 tggatcactt tgttgagctc atctttacct gccagatatt ccgacaagcc atgttcatta
    21061 ctcacggtaa acaggttatg cgaataacca cggcgtaagt cggcatcaat aaataacact
    21121 ttttgatcgg actgggtgat caccgctgcc agagttgaac tgacaaacgt tttaccactg
    21181 tctggcgtcg caccggtgat catcagaatg ttattctccg tctccatcat agcgaagtgc
    21241 agactggttc gtagcgcacg tacggcttcc acagcagaat ccgccgggtt atccaccgcc
    21301 aggaagggga tatttttagt acgatggcgc tgctgattag aaaataaatt tttcttacgc
    21361 agacgggtac gtttatccag ccactcggac attgggatag tggcataaac gctgatgccg
    21421 tgctcttcca gttgttccgg ggcttctaca ccacgacgca acatcgcacg cgccagcacg
    21481 gcacccaccg aaataaacag gccaagaata aaaccaagca ccacgttcaa cgcttttttc
    21541 ggtttcactg gctgcggctg agtgactgcc gggtcgataa tccgcacgtt accaatggca
    21601 ctggatttcg aaatactcaa ctcctgctgg cggttaagta attgcagata taccgcacgg
    21661 cccgcttcta cgtcacggct taaacgtaac acttcctgtt gagtggaagg cattgccgat
    21721 acccgcttat tcaggcgttt gcgttcttgc tccagcgtct ggcgtttttc cagcagcgca
    21781 cgataagttg ggtgatcttt cttatacagc tgggagatct ctgcctcgcg gaaagtcagc
    21841 tcattgagtt gattatcaac gttcacaatc tgctcaagaa cggctttggc ttctaggtta
    21901 aggtcaaccg aatcgcgctg ctggcgataa acgttgagtt tttcttccgc ctggtccagc
    21961 tcgctgcgca cttcaggcaa ctggcgctgt aagaattcaa ggctttgtga atcctgcgcc
    22021 gcttggcgag cgatattctg ttgcaaatag ttgttagcga tgctgttcag aatacgagta
    22081 atcaactggg gatcatcacc agtcatggta agttccagca tcccgctttc tttactgcgt
    22141 tcgctaacgg taaaggtttc ctgcaatgcg ttaatcgctt ccagttcggt aggctggctc
    22201 aggacaaact gtgttcctgg tttggcctta atgtccgcga tagtcagcgc aacgccatct
    22261 ttttccagac gctggccgac cataccattg acggtgaact cttcaccttc cagtgtatag
    22321 tggccgtttt ccccaaccgt gagtgtcagt tgctgatcct gaccattcag ttgtggaata
    22381 tgcatccagc tgatcgccag ctcacctggt ttttctttgg ttaatctcgc ccagccgcga
    22441 cccacaatcg gaaaatactt ctgctcaact atgtcgcgca gattcagttc agcaatggtt
    22501 ttaccgagaa tcatgcgcga ttgcagcagt tgaatctccg gtgcagactc gggcgatgag
    22561 ttagggatca tatcgctcag gccgctgaga atggcgttgc cctgtttttg ctcaacctgg
    22621 accagagtat ctgcctgata aattggtgtg cttaacagcg agtaagcgac agcgatcagc
    22681 gtgaataacg cggtcacgct gataataaac ttacggtgat cccataactc gccgaccaga
    22741 cgaagcagat cgatctcatt ttcctgagta ctgcctggtg gcgtattcat atttttagtt
    22801 gtcatcgtat tttataaact caaattaccg gctgaggcgc ttcgcccatt cctgactggc
    22861 gcgctccaac ataccgtaga catgttcaaa tgcgtcctga cttttacgat agggatccgg
    22921 gatctctttc tgttccagcc attgcccaaa cagcattgtc ttcccgcgga cctcgggagc
    22981 gattgcggta acctgagcaa tatgctctga ctccattgcc agaatcagat cgtaatttcg
    23041 tgccatctca gcagtgagct tacgtccggc atgtccttca agagatacgc catgattagc
    23101 ggcaacatct gctgctgtcg catctgcagg gtgttttacc agaccatgaa cacctgccga
    23161 tttgactttt acgcctggca gacgtttacg cagcaagcgc tcgccaatgg gcgaacggca
    23221 aatgttgccg gtacaaacca ccaggattga gttaaatttt agttgggcca tgtttgaatc
    23281 caccgtgaag tctctgtcag gtcatgcacc ccggaaatcg tcggtaccag cagagaaatc
    23341 acacggttcc aacgagccag cggcgcggta gtgacataaa caatgtcgta aggttcaagc
    23401 tggaattccg ttccgagtat cattgccgat gcgtccttcg cattcagctg ataaatattg
    23461 gcgattttgc cattctgctt gttttgcgtt gcacgaataa caaaaatccc cgtcgcatca
    23521 gcgacatcct gattcatacc ctcagcgtta cccagcgctt ccgccagggt cataccgctg
    23581 cggtccattt tcagcgtgct ctgtttaccc acttcaccca tcacgaagac tttcagatca
    23641 tcgttgcgcg gaataaataa aatatcgccc gggtgcagca gtttgttctg gcgcaagtcg
    23701 ccacgctgca tcagcgcata gaggttcact ttggtcttta cgccattctg ggtgagcacc
    23761 acgttgcgcc agtctgcatc tgcggtcaga ccgcccgcgg cgttaatcgc atccatgatg
    23821 gtcagaggaa tattggtaat cggctgctga cccgatttgc tgacttcgcc ggtgacgtac
    23881 gctttttgcg atcggaacgc cgcgacgctg acatcgactt gcgggctttc aatgactgaa
    23941 tcgagacgcg ctgtaatctc gttgcgtacc tgggtaagtg ttttcccggc cactttcagg
    24001 cgaccaatat aggggtagaa aatcgcacca tcggcgttaa cccagttgcc ggtatcactg
    24061 gcgctacggt attgccctgc gggggtggtt agttccgggt gatcccagac cgtaaccatc
    24121 aacacatcac caatcccgat acgatattca tagtttgcga tttgctgctc cagctccggg
    24181 ttagcctgcg acataatcgg tttggcgcgc aactgatcaa tcaatcctgg cgtgacggga
    24241 tagatattga ccattttgtc caggtcatac tgattgtcag gtagttcaat gacatccttg
    24301 ttactggtcg ataaattctg accaggaaca agggtacatg ctgtcaaaga cagaacagcc
    24361 aatgtcagta tcgaaaactt aaaaatgttc tttttcattg gtttatattt atcagtcaat
    24421 gtaatgttat gaattacgtc aggttattgt ccaaccggta cttctcgctc tgccgtcatt
    24481 ggatagagct ggtatttgcg tgacagcatt tgtccaccat cacgcgtcaa tggtgtccac
    24541 gaaaccaccg cgcggttgcg gttaggtcca atggtcatca agtcgaatgg aatcgagata
    24601 taaaaacctt tactaaagcc gccttcgccg tagtcatctt tagatacgtt actgattgcc
    24661 gcccataccc ctaccgccac gccgctgtca aagcgtttgg cgacgtcgat cgttgcgcct
    24721 ttatcttttg ccagatattg cccaacgcta agtttcatca gtacgccatt gagcgtcggc
    24781 gggttccagt aagccgtcac gaaaccagtt ggcgtggaat aatcggtgaa gcgcatcatg
    24841 ttgtcccagt cacgttgctt cacgtagtta acgtccacac ccagcgccca gctggcatct
    24901 agcgggcgat aaagcagctc ggaaccgaca ccggcgtaca tcgtttccag ataaccgcca
    24961 tacacctggc catagaaacc attgcctaag tcggcaaagt agttcgcctg caagttgttg
    25021 agataaacgt cattgcgaac gtaatcacgg atatgcgtgc gcacgcgggg cagggtagag
    25081 tccgcgggca acagcgaaga cttaaacttg tcgtagttgt tgtaaatatt ggtgaaaata
    25141 ccgccatcaa gcagcaggtg gtcggtaaac cagtagcggg cactgggcat cagccccagc
    25201 tggaacatat agaaatcttc cgggccgccc agcgactgtg aaagtgttgg gttgaaagag
    25261 tagctaaagc gatcttcacg aatacggtag ccccgaccaa aggcagaaag atcttctgct
    25321 tcaacacgtt gttgttgaag ttgctctgat tgaccaggcg ctgtaccagc cagctgtttg
    25381 cgcaggctgg ctacgtcggt ttcggtagtc accatcgcca tatgctcgcg cttttgcgtc
    25441 acgctaatct tctcaacgcc ttgcggcagg ttattcacca gaatccggtt ggcacgatcg
    25501 accgcttcgc gagaatcacg gtatttgtat tgttgaccag acatatacag cgtcttatcg
    25561 cgcagctgaa tttccggtgc ttcaaaacct gcgttgtact tcagcgcggt aagttggttc
    25621 gctactgtgg tgtactgcaa tccttcagat tcaggcgcag gttgatatgc cggttttggc
    25681 gtatcgcgca gggcagggcg cagatcgttg aaattggtcc gtaacgtgaa gccaaacatc
    25741 aacgtgttac cgcgttcata actcaggttg agatctgccc agctggcagc gcgataaact
    25801 gcgccgacgt tgaaatggct tgcctgaggc agtttgccag cgaaatcatt ctggtaattg
    25861 ttgccatcgt attcgagttt cagacgcagg ggattccacg gcgtttgata ctcaatgccg
    25921 ccaaagatgg aagccgggcc acgaaagata tcgctaaagc tgatatcgcc cgcatcgtga
    25981 gactctgcgc gatgacaata tttatcgctc acccggcaaa acgggttggt aatattgccc
    26041 gcattaccgg cgtagcccca tgccatcccg agggtgaaat caaatggccc cgcttgcttg
    26101 ctggccacca gatactcacc gtcaaacaga cccgtaccag caatatcacg tttaccaaac
    26161 gccacttgcg gtagccagta accttcttcc cacaggcgaa gtttaaaatc gaatgatttg
    26221 tctttgtatg actgatcgcc gctgaaatct tcccactggc tatatttgcg tgtgcgcaca
    26281 tccgtataac gaatggtgcc ttccagccat gggaacagcg ccacggaggt ggagtagaac
    26341 cggtattgat cgttatcccg gtagttgacg ctgaattcac cttccggtgc gatgcgcgca
    26401 tttggcatct gcaacaatcc tgtgccgcca aagtctgatt gcgacgaacc cagcggatcc
    26461 gggtaggtta atacttcagc atgacaggca ctggagacgg caatggccag gcagcttaaa
    26521 agataataat tcttcttcat cagtcaggaa cacgttgcgt taaaacagac acaatctggt
    26581 catttaaatc agcatatttt tcgggcagta catgcgcaga aaagcccaac caaagctggc
    26641 tgccaggcgg tggttccaca tgtcttttat tccacagggc aacaggggcg acgacagtct
    26701 caccctcagg cgtaatcacc ataacgttat tcttgtccgc gcctgcaagg cgggggtgat
    26761 cttgcagata atcggtaacg ctacggcctg cctgccaggg caattgcccg gccccagaaa
    26821 ccgcacccag cagagtaata gtcaccggac gctgtacggt atagagcgta tagtccccga
    26881 ccaacggggg attgctgttc tcatccactc gaacaaaatc agggtccagt ttgaccggta
    26941 agcgaccagt gatattgaga ttgagtaact gctggcgcac ggatttaatc gttgccgcca
    27001 catcgtcgtt agcttctgct tcccaggaag caagctgtgc catgacatgt tggtagtctt
    27061 taagcgcttt agctttcgcc gcagagtcgg tcagcaaggc accaggccac cagaggcgat
    27121 cgcgcagttg cggttgtgtc accaactgga caacattttc catggggcca acggaaagtg
    27181 tctgttgttc gccaggcaga taaatagtca ccgttccttg cgcaaaggca tggggtgtca
    27241 ttacgtaaag tacgctggca atgaaatacg actgtaattt attcatggtg cgggtttaag
    27301 aaacgtcatt tctacgggaa taacccctgc gcctaacatt tgccgacttt gacgaacctg
    27361 gccagtagcc gaatcgaccc agaatgtgtt ttgccactgt ttttctggcc gcgtggaagt
    27421 cacctcttcc tgccagacat tacacagcac attgcgaccc gcaatattca gcgtctctaa
    27481 tccagcaaag gaaaaagtag aactcagggt cgcagagcga aaatggttgt cttcactcca
    27541 gagaatatcg cgcgtccagc ggctgccatc ttttattgcc agcgcgttac gcagagggtc
    27601 ctgcccggaa tttgtcactt ccagcagatt attattaagt ttgacggttt ttaaaagacg
    27661 tccattgtgg gtaaccagca tggcgttatc ctgggataac catttgcttt gttcttgttc
    27721 tatatatccc agtaccacaa agattcgttg cccttcatta aggcgtaaat acatcgtgga
    27781 ataaggcaac gcctggatct gctgatccgc tacggtgata tcctgattat cgaaaaggct
    27841 ggcgcgaaat gtatcgacca tactttgctg gctgtgcgta catcccgcaa gaaatagtgc
    27901 gaaaatcgat aaaataagag ggcgcacctt taatccttga aaggttaatt aaaaaaatgc
    27961 aaatctttaa agcccggtac gaatatcgca accgggtatc atttaacttt aatttcgacg
    28021 cgttaaagca gtattagcgt gtagtggacg tggtggttga ggtgttatga gaaccgccat
    28081 cgccactgtc atttgctgca acaactgcca acgtcgccac accaacagcc gttgccacac
    28141 cgacaactgt cgccgtgccg acagcgccag cagccacgcc accagtggta gtagcagtcg
    28201 tggttgcgcc ggtagtggtc gttgtggtgc cagtagtacc cgtcgttgcc tcggtcccgt
    28261 ttgttgcttc aggggcagca aacgcagctg gcgtcgtcaa catgaaggcc ataaggattg
    28321 cagaaagctt gtgtttcata acttttcctt tattcatcgc atggacaata cgtacgcttg
    28381 agatcaggat tgtctacttt gagtataaca tccttgtgaa atctcccttt cctcataccg
    28441 cttgcactat atactgcggg taggaaaggc gcgcagaggg aaatataaga ttgttaacta
    28501 tccccctctg gaaatacgac ttatgagcat aagataaatc ttagcaaaat acaaattaaa
    28561 gataaggaaa ttgttacgaa agctattaat tattgttggt aatatagttt caagtggtac
    28621 tataactggc tgttaaatgg catttataac tattaggtgc agagatattc gcttaaatgg
    28681 attagtttct ttgtggaaaa gtaactgatg ttataatata tgatgttgac tattgcacta
    28741 ttccaataaa accagtcagc tttaaacaag cagcgtcata ttaagagaga taaacatttg
    28801 ccgctgttgg tcctcgcagg ccatttacgc ggcaaaattc cacacgtaat cctggtataa
    28861 gcacttctgc gtcgcgggga gtgaatgcgg aaatatggac ctgaacttct ttacgaccgt
    28921 cggaggggat aatgaatcct ttgccgcttt tgcgatcaaa ggttttgaca attcctgtca
    28981 ttttacggga caaacaaatt ccttactgaa aatactgcgc tgcactatac ggggttaata
    29041 aaataaagcc agcgatattt aagaccgccg gacggctaaa ataaaatttg cttaatctca
    29101 attatcatgc gttaatagct gcgtcggttt gaaagacaga cagcatacaa agtagtttac
    29161 taaagcagtt ctcattatca ggcattatcc ccttcttttg agtctctctc ctgaacacta
    29221 agtagtttct gtattaaagc cctgtttgcc gaaaggccca aaatgaagga agtaaaatat
    29281 gtctaataaa atgactggtt tagtaaaatg gtttaacgca gataaaggtt ttggctttat
    29341 cactcctgat gatggcagca aagacgtttt cgtccatttc actgccatcc agagcaatga
    29401 attccgcacg ctgaacgaaa atcagaaagt tgaattttct attgagcagg ggcaacgtgg
    29461 ccccgcggca gcgaacgttg ttacgctcta aggttgccgt tattactcaa catctccatt
    29521 tccgctgtcc atgttgtcat ggttcacagt accgcacatc ggcattcgat gtgacggagc
    29581 gaaatccttt gggcgctaag tgtatttttt gtaaatcgac gatgatcacc tttgataacg
    29641 tcgcgctgca aatacgcact gaccatgcgc cgctggattt cacaaaataa tatcaggctc
    29701 cctcg
//
LOCUS       DAJVUN010000032        29452 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.032, whole genome shotgun sequence.
ACCESSION   DAJVUN010000032 DAJVUN010000000
VERSION     DAJVUN010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29452
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.032"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(435..2126)
                     /gene="fruA"
                     /locus_tag="OQQ76_001172"
     CDS             complement(435..2126)
                     /gene="fruA"
                     /locus_tag="OQQ76_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIBC"
                     /protein_id="HCS1967743.1"
                     /translation="MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAEMA
                     IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKLYTAPVAATAPVAASG
                     PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD
                     LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATFE
                     GKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS
                     AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS
                     TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV
                     LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV
                     ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG
                     AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA"
     gene            complement(2143..3081)
                     /gene="fruK"
                     /locus_tag="OQQ76_001173"
     CDS             complement(2143..3081)
                     /gene="fruK"
                     /locus_tag="OQQ76_001173"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HCS1967744.1"
                     /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN
                     VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE
                     VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ
                     CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA
                     HVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR
                     LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN"
     gene            complement(3081..4211)
                     /gene="fruB"
                     /locus_tag="OQQ76_001174"
     CDS             complement(3081..4211)
                     /gene="fruB"
                     /locus_tag="OQQ76_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HCS1967745.1"
                     /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML
                     AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS
                     SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV
                     ASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS
                     RAANAFDVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT
                     SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL
                     MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA"
     gene            4579..5760
                     /gene="setB"
                     /locus_tag="OQQ76_001175"
     CDS             4579..5760
                     /gene="setB"
                     /locus_tag="OQQ76_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter SetB"
                     /protein_id="HCS1967746.1"
                     /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD
                     EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN
                     RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGP
                     PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMQKELPLATGTIEAPRRNRRDT
                     LLLFVICTLMWGSNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA
                     KRLGKRFLMRVAAVGGVCFYAGMLMAHSPVILLGLQLLNAIFIGILGGIGMLYFQDLM
                     PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRIKD
                     V"
     gene            complement(5757..6011)
                     /locus_tag="OQQ76_001176"
     CDS             complement(5757..6011)
                     /locus_tag="OQQ76_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HCS1967747.1"
                     /translation="MECRPGCGACCTAPSISSPIPGMPDGKPANTPCIQLDEQQRCKI
                     FTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAP"
     gene            6166..6738
                     /gene="yeiP"
                     /locus_tag="OQQ76_001177"
     CDS             6166..6738
                     /gene="yeiP"
                     /locus_tag="OQQ76_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P-like protein YeiP"
                     /protein_id="HCS1967748.1"
                     /translation="MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFS
                     DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE
                     ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST
                     GLVIQVPEYLSPGEKIRIHIEERRYMGRAD"
     gene            6961..8427
                     /locus_tag="OQQ76_001178"
     CDS             6961..8427
                     /locus_tag="OQQ76_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS1967749.1"
                     /translation="MNTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLT
                     DRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLN
                     AKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS
                     APGILVEALKRRRERGLTPFTVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHV
                     SFPGTMVDRIVPAATDESLVEISQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVA
                     GVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAHISDCMQDRAFRHAARTLMLDE
                     QAPTLQIKDVDLTQYADKLIARFANPALKHKTWQIAMDGSQKLPQRMLAGIRIHQGRE
                     TDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLRE
                     VFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI"
     gene            8545..9531
                     /gene="yeiR"
                     /locus_tag="OQQ76_001179"
     CDS             8545..9531
                     /gene="yeiR"
                     /locus_tag="OQQ76_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding GTPase YeiR"
                     /protein_id="HCS1967750.1"
                     /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGI
                     DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL
                     DLLTAPVYEPWMDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRATPE
                     SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA
                     ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE
                     GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA"
     gene            9570..10283
                     /gene="lpxT"
                     /locus_tag="OQQ76_001180"
     CDS             9570..10283
                     /gene="lpxT"
                     /locus_tag="OQQ76_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo(2)-lipid A phosphotransferase"
                     /protein_id="HCS1967751.1"
                     /translation="MIKNLPQIVLLNIVGLALFLSWYIPVNHGLWLPIDADIFYFFNQ
                     KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTA
                     VVLNQLGQALIPVKRASPTLTFTNINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF
                     MWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR
                     LITFFDKSLPGKNKHFQNK"
     gene            10695..11261
                     /gene="mepS"
                     /locus_tag="OQQ76_001181"
     CDS             10695..11261
                     /gene="mepS"
                     /locus_tag="OQQ76_001181"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional murein DD-endopeptidase/murein
                     LD-carboxypeptidase"
                     /protein_id="HCS1967752.1"
                     /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG
                     SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF
                     REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST
                     SSGVIISSMNEPYWKKRYNEARRVLSRS"
     gene            11442..12998
                     /locus_tag="OQQ76_001182"
     CDS             11442..12998
                     /locus_tag="OQQ76_001182"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1967753.1"
                     /translation="MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD
                     TLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK
                     KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
                     VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA
                     GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQ
                     FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL
                     IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD
                     MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET
                     ITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVR
                     WLKKPYTPQW"
     gene            13080..14894
                     /locus_tag="OQQ76_001183"
     CDS             13080..14894
                     /locus_tag="OQQ76_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311096.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1967754.1"
                     /translation="MIVRILLLFIALFTFGAQAQAIKESYAFAVLGEPRYAFNFNHFD
                     YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI
                     AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTV
                     KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSW
                     KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND
                     AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDF
                     EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPPEVFTQIYQPPV
                     SKGDGYDRDNLLKADTLLNEAGWVLKGQQRVNATTGQPLSFELLLPASSNSQWVLPFQ
                     HSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRLWRAMPWPSSDLQISWSSEYINST
                     YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW
                     WDKFSQPAVRPVYRLGIDTWWYDVNKAAKLPSARQQGE"
     gene            14895..15989
                     /locus_tag="OQQ76_001184"
     CDS             14895..15989
                     /locus_tag="OQQ76_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter permease YejB"
                     /protein_id="HCS1967755.1"
                     /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF
                     GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER
                     YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV
                     HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPIRGLVSANFDSLPWY
                     QKITDYLWHITLPVLATVIGGFAALTILTKNSFLDEVRKQYVVTARAKGVSEKNILWK
                     HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL
                     YIFTLIGLLLNIVSDISYTLVDPRIDFEGR"
     gene            15989..17014
                     /locus_tag="OQQ76_001185"
     CDS             15989..17014
                     /locus_tag="OQQ76_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1967756.1"
                     /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND
                     KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA
                     TSINFATDKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL
                     AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL
                     VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL
                     TSLDFLGFGLQLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDT
                     FDPNKAV"
     gene            17016..18605
                     /gene="yejF"
                     /locus_tag="OQQ76_001186"
     CDS             17016..18605
                     /gene="yejF"
                     /locus_tag="OQQ76_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter ATP-binding protein
                     YejF"
                     /protein_id="HCS1967757.1"
                     /translation="MTQTLLAIEDLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES
                     GSGKSVTALSILRLLPSPPVEYLSGDIRFRGESLLHASDQTLRGVRGNKIAMIFQEPM
                     VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG
                     ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS
                     IVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL
                     DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR
                     LINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH
                     QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD
                     EPTSSLDKTVQAQILTLLKSLQQKQQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG
                     PCARVFAAPQQEYTRQLLALS"
     gene            complement(18609..18953)
                     /locus_tag="OQQ76_001187"
     CDS             complement(18609..18953)
                     /locus_tag="OQQ76_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967758.1"
                     /translation="MTSLQLSIVHRLPQNFRWSAGFAGSKVEPIPQNGPCGDNSLVAL
                     KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV
                     AIAEPFSNYNPF"
     gene            complement(19286..20465)
                     /gene="bcr"
                     /locus_tag="OQQ76_001188"
                     /pseudo
     CDS             complement(19286..20465)
                     /gene="bcr"
                     /locus_tag="OQQ76_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311101.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Bcr"
     gene            complement(20493..21188)
                     /gene="rsuA"
                     /locus_tag="OQQ76_001189"
     CDS             complement(20493..21188)
                     /gene="rsuA"
                     /locus_tag="OQQ76_001189"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HCS1967759.1"
                     /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE
                     HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD
                     IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL
                     TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE
                     YRPLTEEEIASVV"
     gene            21337..23097
                     /locus_tag="OQQ76_001190"
     CDS             21337..23097
                     /locus_tag="OQQ76_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HCS1967760.1"
                     /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL
                     ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR
                     NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW
                     IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS
                     NGLFSEADLNRELKKQQRITPHIISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAED
                     AALITGDTPGAERDVLIEDFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY
                     QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT
                     FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
                     CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF
                     RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ
                     VREKVFDYEGRFRRAHELRG"
     gene            23222..23506
                     /gene="rplY"
                     /locus_tag="OQQ76_001191"
     CDS             23222..23506
                     /gene="rplY"
                     /locus_tag="OQQ76_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HCS1967761.1"
                     /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH
                     DKVINMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA"
     gene            complement(23645..24652)
                     /gene="yejK"
                     /locus_tag="OQQ76_001192"
     CDS             complement(23645..24652)
                     /gene="yejK"
                     /locus_tag="OQQ76_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HCS1967762.1"
                     /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH
                     RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF
                     VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN
                     PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE
                     RQNVRQQVYSYCNEQLQAGEEIELESLSKELAGVSEVSFTKFAAEKGYELEESFPADR
                     STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG
                     N"
     gene            24834..25061
                     /locus_tag="OQQ76_001193"
     CDS             24834..25061
                     /locus_tag="OQQ76_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YejL family protein"
                     /protein_id="HCS1967763.1"
                     /translation="MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL
                     INTSIAPAQRQAIANSFARALQSSINEDKAH"
     gene            25081..26841
                     /gene="pbgA"
                     /locus_tag="OQQ76_001194"
     CDS             25081..26841
                     /gene="pbgA"
                     /locus_tag="OQQ76_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin transport protein PbgA"
                     /protein_id="HCS1967764.1"
                     /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP
                     TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL
                     IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL
                     RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL
                     EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE
                     KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL
                     NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNR
                     WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAG
                     RGIPLSEDEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP
                     ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE
                     KPQLSLLLQVLTDEKRFIAN"
     gene            26916..26992
                     /locus_tag="OQQ76_001195"
     tRNA            26916..26992
                     /locus_tag="OQQ76_001195"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:26950..26952,aa:Pro,seq:ggg)
     gene            complement(27095..>29452)
                     /gene="yejO"
                     /locus_tag="OQQ76_001196"
     CDS             complement(27095..>29452)
                     /gene="yejO"
                     /locus_tag="OQQ76_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311108.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter YejO"
                     /protein_id="HCS1967765.1"
                     /translation="NGGYQYIEMNGTAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVY
                     GAANDPTIKGGRLIVEKDGITVLAAIEKGGLLEVKEGGLAIAVDQKAGGAIKASTRVM
                     EAFGTNRLGQFEIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTATG
                     VDKKAGGKLIVSTNALEVSGTNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTIL
                     DEHATMQSLGKDTGTKVQANAVYDLGRSDQNGSITYSSKAISENMVINNGRANVWAGT
                     MVNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSV
                     WAIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGN
                     GNFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTL
                     GNAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTV
                     RERLGSVKSVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTI
                     RGLFFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKM
                     SNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADV
                     GNTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNHVKVNDDGKFNNDVAG
                     TPGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF"
BASE COUNT         7112 a         7728 c         7213 g         7399 t
ORIGIN      
        1 cttttcgcgc atagcacatc ctctggtaaa aaattaccaa ccctgtcaat ccacaagaat
       61 atagatactg caaagacggt ttaaacatgt gttcatattt aaacatgtgc tcatagcatg
      121 catgttttac gtaaagtaaa ttaccgccag agaggcaaaa tgggcagatt tgagcaggct
      181 cacaaaatgc gattaaatgc ctgaattaca aaagcgagga atttgtgacg ggatgcacag
      241 aacgggaaca ataaaaaagg cagaaaataa tctgcccttg aggaaataac cttagtgttt
      301 gatgaacgtt tcaagtttct actgaaagat aaaaccattt aaattcataa aattacattc
      361 acaaaccggt cattctcttt gcgctcatca aatgttacag ggcaggaaat ttctgccctg
      421 taacacacct tttattacgc tgctttcgct actgcgtcca cttccggacg tttcaggaag
      481 gcataggcca aacccgccac cagcgtaccg gcaataattg ctaccaggta acccagtacc
      541 ggcgtaatag cgccagggat cagcagaaca aacagaccac cgtgcggtgc catcagtttc
      601 gcaccaatcg ccattgagat tgcgccagtc agcgccccac ccacgataca gcacggcagc
      661 acacgcatcg gatcacgagc agcaaacgga attgcacctt ccgaaataaa gcacagtccc
      721 agtaccagag cagctttgcc accttcctgc tgcgctttgt cgaatttgcg acgcgccacc
      781 attgttgcca gacccattgc cagcggtggc accatacctg ccgccataat cgccgccatc
      841 gggccatagg tttgagtact cagcagaccc acaccgaatg cgtacgctgc tttatttacc
      901 ggaccgccca tgtcagtaca catcatgcca ccgaggatcg cccccagcag aaccgcattc
      961 gcagtcccca tggtctgcag ccagtgagtc aacccttcga gaatgccagc aaccggttta
     1021 ccgatcaggt agatcatcgc cagaccgacc accagactgg aaattagcgg aatgatcagg
     1081 atcggtttca gcgcctccat actctgtggc agtttcagtt gcgtactgat taacttcgca
     1141 atgtaaccag ccaggaagcc cgcaataata ccgccaatga agccagaacc ggtgctgacc
     1201 gccagcatac caccaatcag acccggcgtg agacccggtc gatcggcaat ggagaaggca
     1261 atgtaacctg ccagtaccgg caccatcagc gcaaaggctg aaccaccacc aatctgcatc
     1321 agcgccgctg ccaacgtacc cggctcttta aacgcttcga taccaaaagc aaaagaaagc
     1381 gcgatacaca gaccacctgc aacgaccatc ggcagcatgt aagagacacc cgtcagcaag
     1441 tgacggtatg cgcctgcact ctctttctta ccttcaaagg tcgccgtttg agctttgccc
     1501 gccggttcat acggcgttgc ttcagcaacc gctttatcca gttcctgcgc ggttttcttc
     1561 agcgccagac cggtagaggt acgatacatc ggtttaccag caaatttcgc cagatccact
     1621 tcgatatctg ccgccacaat caccagatcc gctgcggcta cttcttcggg agtgattgca
     1681 ttacccgcac caacagaacc acgggtttca actttcaccc accagccacg ttttttcgct
     1741 tcggtttcaa tggcttcagc cgccataaag gtgtgtgcta cgccagtcgg gcaagcagtc
     1801 accgcaacta cgcgtttcgg accgctggcg gcaaccggtg ctgtcgcagc gaccggcgca
     1861 gtgtaaagtt tcgcatggcc tttggcttca ctcaggaaca gctcagggtg cgcaactgcc
     1921 cgggaaatat cgcccagcca gacattttta ccgttcagcg cgctgtcatt cgggatggaa
     1981 tcaccgagaa caatcgccat ttctgcgtcg ttcggattgt cgatgatttc cagttttgct
     2041 tttcgcgccg ccgcgcccag cagggtcttc gccatatagg cgcgtgcctg accgagatta
     2101 gcgtcaataa tcagcagcgt tttcattatg cctctcctgc tgtcagttaa aaggttgtaa
     2161 gtcgacgcgc gccatcattg cggccaactg cggacgatcg gtaataccca cattgctttg
     2221 acttaccgcc agggctgcaa cagcagtcgc cagacgcagt gtgtgttcac tggattcacg
     2281 cattagcaag ccataaatca ggccaccaac catagaatcc cctgcgccaa cggtgcttac
     2341 gacatcgact gacggtggtt tggcgatcca ttcgccggag gcattaaccc aaagcgcgcc
     2401 ttcggcaccc agtgaaataa cgacatgcgc aataccttgt tcacgcagcg catgcgcagc
     2461 ttcaatcaca tctttcattt caggcagttt acggcctgcc cagatttcca gctcgcggcg
     2521 gttaggtttc accagccacg gtgccgcttt caaacctgct actaacgctt cacggctact
     2581 atcaaagata atgcaaggac actgactacg caggcgagtc atccagtcgg tgaacgcttc
     2641 cgggctgacg cctgacggta agcttccgct gacacagacc atatcgaact gaccgagcca
     2701 gctcagagaa tcagtcacaa agcgttccca gtcggcgggg gtgacttcaa aacccgagaa
     2761 gttgaagtcg gtcacttcgc cgtctttttc cgtcagctta acgttaattc gggtgcgccc
     2821 ctgtacaacc tggaaacggt tggcaatgcc cagctcgctg aacagttgct gaaaaccatc
     2881 ctgattgtct ttacccagga agccgccaac ggtgacatca attcccaggt cttttaatac
     2941 tttggccacg ttgatgcctt tacccgccgc atgcagaccg gtggttttca ccaggttcac
     3001 ttcgccgcgt tcaatttccg ggcagaaacc aacaaggtca taagccggat taagggtgat
     3061 agtagcaaca cgtctgctca ttatgcgccc tccccaagac cagcagcgat agcgtcgccg
     3121 attgctttca gcgcctgttc agcatctgca ccctgggcgg taaagcgtag gcgatgacct
     3181 ttcttaacgc caagtgccac aactttcatc agactacgtc cgtttgccgg tttgccggta
     3241 ccatcaaggt ttgtcacggt aatatcactg ttaaattgtt taatggtatt gaccagcatg
     3301 gtacctggac gagcatgcag gccgtgttca ttgcgcacca caaactccgc gcttaacacg
     3361 tcgtcggtcg gcgcatcatc gctggtcagc agcgccagca acgttgccgc atccgctttc
     3421 agcaagcggt cagctttatt gtcgagcaat aaatcagcga gacgcttaag aaccgcgatg
     3481 ggctgatcgt cattcatcgc cacactcacc agcatggctg ccgtttcgcc gtccacatca
     3541 aaagcatttg ccgcacggct taccgcaatc gcgctacgca gattgccttc ggcgctatcg
     3601 ctcagccaga taccctgtcc gagattcagc ggttgttcat tgatggcttt ggtgacgaaa
     3661 gtggcgtcaa ctgcccccgc ctctttcaga cgcgcagcgt tcagcgcctg aagagtcagc
     3721 agatcgctgg cgacgatatc cagtgtcagc atttcgttgt cgagcttcag ctgctcactc
     3781 tgcttttcgc ccatcagtaa tgcgcgaagt tcttctgctg ttgttgctga cttcagttgt
     3841 tcagcaacgg aatcatcgct cagtacgtgg gtcagctggc gtagcaggcc cagatgttca
     3901 tccgagctgg cagcaatacc gattgccacg tacgctacct gaccgtcacc ccaggtgacg
     3961 ccttccggga actgaaatac ctgaacgccg gttttcagca cctgatcgcg ggtgtcggta
     4021 gtgccgtgtg gaatagcaat accattgccg aggaacgttg aggtttgctg ttcgcgcgcc
     4081 agcatgccat tgacgtagcc ttctgctaca ttaccggcct gcaccagcgc cgcagcgacc
     4141 tggcgaatcg cctcttcttt gtctccggcc ttttcgcccg gatggatgtc ctgtacggat
     4201 aactggaaca tagttctcct ctcttgctga attgaaacga ttcagcctct atgagaaaaa
     4261 aagcgccaac ctggcttagg gttaaagaca agatcgcgct gaaacgtttc aagaaagcat
     4321 aatacttctg tttcagcacg caaggaaagc cgtaaagtta tgagcaaaag tttgatgtgc
     4381 tgcacaattt tttgccattt ttcctaattg ctgatgggaa aatccgttat cagcaatttc
     4441 atttcagcag cgtcagcagc caatcagcaa cagtgaaatg gcattttgat tattcgtggc
     4501 gcttttgatt tcgctgtctg tttattttct gacaagcagc gtaaactccg cgtcttcctc
     4561 ttccagtgat cgaccagcat gcataactcc cccgcagtct ccagcgcgaa atcgtttgac
     4621 ctgacctcga cggcgttttt aatcgttgcc tttctcaccg gtattgcggg cgctctgcaa
     4681 accccgacac tcagtatttt tcttaccgat gaagtacatg cccgtccggc gatggtggga
     4741 ttcttcttta ccggcagcgc tgtcattggg attctggtaa gtcagtttct cgccgggcgc
     4801 tctgataagc gcggcgatcg caaatcgctg attgtctttt gctgcctgtt aggcgtgctg
     4861 gcctgcaccc tttttgcctg gaatcgcaac tactttgttt tgctattcgt tggcgtcttt
     4921 cttagcagct ttggctcgac cgctaacccg caaatgtttg cccttgcccg tgaacatgcc
     4981 gacaaaaccg gacgtgaggc ggtgatgttc agctcttttt tacgcgctca ggtttcactg
     5041 gcatgggtca ttggcccacc gctggcttat gccttagcga tgggtttcag ctttacggta
     5101 atgtatctga gcgcagcggt agcgtttatt gtttgcggtg tgatggtgtg gctgttttta
     5161 ccgtcgatgc aaaaagagct tccgctggcg accggcacga tcgaagcgcc gcgccgtaac
     5221 cgtcgcgata cgctgctgct gtttgtcatt tgtacattga tgtggggctc gaacagcctg
     5281 tacatcatca acatgccgct atttattatc aacgaactgc atcttcccga gaaactggcc
     5341 ggtgtgatga tggggaccgc cgccgggctg gaaatcccga cgatgttgat tgccggatat
     5401 ttcgccaaac gtctgggtaa gcgtttctta atgcgcgttg ctgccgtggg tggcgtctgt
     5461 ttttacgcag gaatgctgat ggcgcattca cctgtcattc tgttgggctt gcagctgcta
     5521 aatgctattt ttattggcat tctgggcggc atcgggatgc tctattttca ggatctgatg
     5581 cccggtcagg cgggttcagc caccacgctc tataccaaca cttcgcgcgt gggctggatc
     5641 atcgcaggat cagtggcggg catcgtcgcc gagatctgga attatcacgc tgtgttctgg
     5701 tttgcgatgg tgatgattat cgccactctg ttttgcttac tacggattaa agatgtttaa
     5761 ggcgcggtca gcatttccag atcgataagc caggtcatgg cctgctgacg cgagttaccg
     5821 cacatttcag cgctggcttg taagcctgca cagactttcg gtcgcagtgg cgaggtgaaa
     5881 attttacagc gttgctgttc atcaagctga atgcagggcg tattggcggg cttgccatct
     5941 ggcataccgg gaatagggct ggaaattgaa ggggcagtgc aacacgcccc gcaacccgga
     6001 cggcattcca tacgttgttc tcttaaggtt aaccaccgga ttgatgagcg cgcacagtac
     6061 cacctttttt gcaccagcaa aagtgcgaat accacttgcc cgaaaggccc gtcgcgagta
     6121 ctttgtcgcg atatttttga cattttcgac tacaggaatt tttcgatgcc aagagcgaac
     6181 gaaattaaaa aaggtatggt actgaattac aacggcaaac tgctgctggt taaggatatt
     6241 gatattcagt cgcccactgc ccgcggtgcc gctacgctgt acaaaatgcg tttttctgat
     6301 gtccgtaccg ggctgaaagt agaagagcgt ttcaaaggtg atgatatcgt tgacaccgtg
     6361 acgctgaccc gccgttacgt tgacttctcc tatgtcgatg gcaacgaata tgtctttatg
     6421 gataaagaag actatacccc gtataccttc accaaagatc agattgaaga agagttgctg
     6481 tttatgccag agggcggcat gccggacatg caggtgctga cctgggacgg tcaactgctg
     6541 gcgcttgagc tgccgcagac cgttgatctg gaaatcgttg aaaccgcacc aggcatcaaa
     6601 ggggcatctg ccagcgcccg taacaaaccg gcgacattga gcactggtct ggtgattcag
     6661 gtaccagaat acttaagccc gggcgaaaaa attcgtatcc atatcgaaga acgccgttat
     6721 atggggcgtg ctgactaact tcagccgcat gcagaaaagg gatagctcag gctgtccctt
     6781 ttttaattta ttataccaat cttctatttt gcgcttcctg aacaccttac gccctcaatt
     6841 ttcactcgtt gattgatcgc cctcacactt catcgcatta acaatccaga ccaatttcaa
     6901 ttgctgtcat ataactttac actgtcgttg ttaattaatc gttactaaga cgtgactcct
     6961 atgaatacaa ttgcctccgt tacgctccca catcatgtac acgctccacg ctacgatcgc
     7021 cagcagttgc aatcacgtat cgttcatttt ggctttggcg cctttcaccg cgcacatcag
     7081 gcattactga ccgatcgtgt gctgaatgcc cagggcggcg actgggggat ctgtgaaatc
     7141 agcttgttca gcggtgatca actgatgagc cagctccgcg cacagaacca tttatatacc
     7201 gtgctggaga aaggtgcgga cggcaatcag gtgataattg tcggtgccgt tcacgaatgc
     7261 cttaatgcaa aactggattc cttagcggca attattgaga aattttgcga gccacaggtg
     7321 gcaattgttt ccctgacgat taccgaaaaa ggctattgta ttgacccggc caccggtgca
     7381 ctcgacacca gtaatccgcg gattattcac gatctacaaa cccctgaaga acctcactcc
     7441 gcaccgggta ttctcgtcga agcactgaaa cgccgccgtg agcgcggcct tacaccgttt
     7501 accgtgctct cctgcgacaa tattcccgac aatggtcatg tggtgaaaaa cgcggtgctg
     7561 ggaatggcag aaaaacgttc gccagaactc gccgggtgga taaaagagca cgtcagtttt
     7621 ccgggaacca tggtcgaccg cattgttccg gctgcaaccg acgaatcact ggtggaaatc
     7681 agccagcatc tgggggtgaa tgatccctgc gcgattagct gcgaaccgtt tatccagtgg
     7741 gtggtggaag ataacttcgt cgctgggcgt cctgcctggg aagtcgcagg tgtacaaatg
     7801 gtgaatgatg tcctgccatg ggaagagatg aaactgcgga tgcttaatgg cagccactct
     7861 tttctcgctt atctgggtta cctctcagga ttcgcccata tcagtgattg catgcaggat
     7921 cgcgcatttc gccatgccgc cagaacatta atgctggatg agcaagcgcc gacactgcaa
     7981 attaaagatg tcgatttaac acaatatgcg gataagttaa ttgcacgttt tgctaatccg
     8041 gcgctgaaac ataagacctg gcaaatcgcg atggatggca gccagaaatt accgcaacgc
     8101 atgctggcag gtattcgcat acatcagggg cgcgaaacgg actggtcgtt gctggcatta
     8161 ggcgttgcag gctggatgcg ttacgtcagc ggcgttgatg atgccggaaa tgccattgat
     8221 gttcgcgatc cgcttagcga taaaattcgc gaacttgttg cgggcagcag cagtgaacaa
     8281 cgcgtaaccg ccctgctttc cctgcgtgaa gttttcggtg atgatctgcc agataacccg
     8341 cattttgtgc aggccatcga acaagcctgg caacaaatcg tacaattcgg cgcacatcag
     8401 gcgctattaa acaccctcaa aatttaacga tttctgcggt taaagcggat gaagctcacc
     8461 ttcgtccgct ctccccttct cttttctgcc ttttttagcc aggattaacg ctcagttaac
     8521 ttaccagagt attgcggagc cgttgtgacc aggaccaacc tcatcaccgg ttttctcggc
     8581 agcgggaaaa ccacgtcgat tcttcatctg ttagcccata aagatcccaa cgaaaaatgg
     8641 gcggtactgg ttaatgaatt tggggaagtc ggaattgatg gtgctttgct cgccgatagc
     8701 ggcgcattgc tgaaagagat ccccggcggc tgcatgtgct gcgttaatgg tttacccatg
     8761 caggtagggt tgaatacctt actgcgtcag ggaaaaccag accgcttgtt gatagagccg
     8821 accgggctgg gccatccgaa acagatcctc gatctgttaa ccgcaccagt ctatgaaccg
     8881 tggatggatc tgcgcgccac cttgtgcatt ctcgatccac gcctgctgct ggacgaaaaa
     8941 agcgccagca atgaaaactt ccgtgaccag ctggctgccg cagacatcat tgtcgccaat
     9001 aaatccgacc gtgcgacgcc cgaaagtgag caagcgctac agcgttggtg gcagcaaaat
     9061 ggtggcgatc gacaattaat tcacagtgag catgggaaag ttgacggtca tcttctggat
     9121 ttgccgcgtc gcaatttagc cgagttgccc gccagcgccg cgcattctca tcagcatgtc
     9181 gtgaaaaaag ggttagcagc gttaagcctg ccagagcatc aacgctggcg tcgcagtctg
     9241 aacagcgggc aaggatatca ggcctgcggc tggatattcg acgctgatac ggtattcgac
     9301 accattggca ttctggaatg ggcgcgactt gcaccggtgg aacgcgtcaa aggcgtgctg
     9361 cgtattcccg aagggctggt gcgaatcaac cgtcagggcg atgacctgca cattgaaacg
     9421 caaaacgttg cgccaccgga cagccgtatt gagctgattt ccagcagcga agctgactgg
     9481 aatgccttgc agagcgcgct gttgaagctt cgtttagcga ctaccgcgta aggttgcctg
     9541 cgtttttcag taagataatt agagaaaata tgattaaaaa tttgccgcaa atagtgttgt
     9601 tgaatattgt cggcctcgcg ctgtttcttt cctggtatat tcccgttaat catggattat
     9661 ggttgccgat tgatgcggat attttttatt tctttaatca gaaactggtc gaaagtaagg
     9721 cctttttatg gctggttgca ttgaccaaca atcgcgcttt cgacggttgt tctctgctgg
     9781 cgatgggaat gttgatgctg agtttctggc tgaaagaaaa cgccccaggc agacgacgta
     9841 tcgtgattat tggtctggta atgctattaa ctgcagtggt attaaaccag ctgggtcagg
     9901 cattaattcc tgtaaaacgg gccagcccaa cattgacgtt tactaatatt aaccgcgtca
     9961 gcgaactgct ctctgtcccc acgaaagatg cctcacgaga tagctttccc ggcgatcacg
    10021 gcatgatgct gcttattttt tcggcattca tgtggcgtta tttcggtaaa gttgcaggtc
    10081 ttatcgccct tattattttt gtggtttttg cgtttcccag agtaatgatt ggcgcacact
    10141 ggtttactga catcattgtc ggttcgatga ccgtgatatt gatcggtttg ccctgggtgt
    10201 tgctgacgcc attaagtgat cgattaatca ccttttttga caaatcacta ccgggaaaaa
    10261 acaaacattt ccaaaacaaa taactcacag taattaacat catcaggttt atttttatag
    10321 tgaggataat cctgatgatg cgcaccgtgc tttcatctat cgaacgcaaa aatcattctc
    10381 taagtaaatg aatggattgc atgcgtttca ctcaatcgta ctttaattga ccaatcccgc
    10441 ttattaactt tctgtatcac tttttcttat aaaaaatcat gtaaaaccgc tcgccaagac
    10501 cgcaccaatc gggtaatctc gaactcgttt tgcctcggcg gtagattatc ctcacagcat
    10561 ataattttgt gcgttagtcc acagatttgg ccttaaggaa ttgtttcaac atgcccaggt
    10621 aattagtctc gtgtcgcttg gcattttttt ataacgatat ttatcgttaa ggacttcaag
    10681 ggaaaacaaa caacatggtc aaatctcaac cgattttgag atatatcttg cgcgggattc
    10741 ccgcgattgc agtagcggtt ctgctttctg catgtagtgc aaataacacc gcaaagaata
    10801 tgcatcctga gacacgtgca gtgggtagtg aaacatcatc actgcaagct tctcaggatg
    10861 aatttgaaaa cctggttcgt aatgtcgacg taaaatcgcg aattatggat cagtatgctg
    10921 actggaaagg cgtacgttat cgtctgggcg gcagcactaa aaaaggtatc gattgttctg
    10981 gtttcgtaca gcgtacattc cgtgagcaat ttggcttaga acttccgcgt tcgacttacg
    11041 aacagcagga aatgggtaaa tctgtttccc gcagtaattt gcgtacgggt gatttagttc
    11101 tgttccgtgc cggttcaacg ggacgccatg tcggtattta tatcggcaac aatcagtttg
    11161 tccatgcttc caccagcagt ggtgttatta tttccagcat gaatgaaccg tactggaaga
    11221 agcgttacaa cgaagcacgc cgagttctca gccgcagcta ataaaccgtt tggatgcaat
    11281 cccttggcta tcctgacgag ttaactgaaa gcactgctta ggcagtgctt ttttgttttc
    11341 attcatcaga gaaaatgatg tttccgcgtc ttgatccagg ctatagtccg gtcattgtta
    11401 tcttttaaat gttgtcgtaa tttcaggaaa ttaacggaat catgttcata cgcgctccca
    11461 attctggacg taagctcctg cttacctgca ttgtagcggg cgtgatgatt gcgatactgg
    11521 ttagctgcct tcagttttta gtggcctggc ataagcacga agtcaaatac gacacactga
    11581 ttatcgacgt acaaaagtat ctcgatacct attttgccga cctgaaatcc actactgacc
    11641 ggcttcagcc gctgacctta gatacctgcc agcaggctaa ccccgaactg accgctcgcg
    11701 cggcgtttag catgaatgtc cgtacgtttg tgctggtgaa agataaaaaa acattctgtt
    11761 catctgcgac tggtgagatg gacattccac tcaatgaatt gattccggca ctcgacatta
    11821 ataaaaacgt cgatatggcg atcttacccg gcacgccgat ggtgccgaac aaacccgcaa
    11881 tcgtcatctg gtatcgcaac cctttgctga aaaatagcgg tgtgtttgcc gctctgaatc
    11941 tcaacctgac gccttctctc ttttatagtt cacggcagga agattacgat ggcgtcgccc
    12001 tcattattgg caatactgcg ctatctacct tttcttcacg tttgatgaac gttaatgaat
    12061 taaccgacat gccggtccgt gaaactaaaa ttgcgggcat tcctctgacc gttcggcttt
    12121 atgcggatga ctggacatgg aacgatgtgt ggtacgcatt tttactgggc ggcatgagtg
    12181 gaactgtcgt tggcctgctc tgctattacc tgatgagcgt acgtatgcgc cccggcagag
    12241 aaatcatgac cgccatcaag cgcgaacaat tttacgtggc gtatcaaccg gtggtggata
    12301 cacaagcttt gcgagtaacg ggcctggaag tactgctacg ctggcggcat cctgtcgcgg
    12361 gagaaattcc cccggatgcc ttcattaact ttgccgaatc gcaaaagatg attgtgccgc
    12421 tgactcagca cctgtttgag ttaattgccc gcgatgccgc agaattagaa aaagtgctgc
    12481 cagtaggcgt caaatttggt attaacattg cgccggacca tctgcacagc gaaagcttta
    12541 aagcagatat ccagaaactg ctcacttccc tgcccgcaca ccatttccag attgtgctgg
    12601 aaattaccga gcgcgatatg ctgaaagagc aagaagccac acaactcttc gcctggctgc
    12661 actcggtcgg cgtagaaatt gctattgatg acttcggcac cgggcacagc gcgcttatct
    12721 atcttgagcg ttttacgctc gattatctga aaattgaccg tggatttatc aacgccatcg
    12781 gtacggaaac gatcacttca cccgtacttg acgcggtgct gacgctggcg aaacgcctca
    12841 atatgctgac ggttgctgaa ggggtcgaaa cgccggaaca ggcgcgatgg ctaagcgaac
    12901 gcggcgttaa tttcatgcaa ggctactgga ttagtcgccc gttaccgctg gacgattttg
    12961 ttcgctggct gaagaaaccg tatacgccgc agtggtaagg tgtgcttacg tcccttatta
    13021 ttcatagtga aagcatgccg gattgcggct aatgatgagt aaaaggaaat ccgttgcaga
    13081 tgattgtgcg catactgctg ctgtttatcg ccctgttcac cttcggtgcg caggcgcagg
    13141 ctatcaagga aagctatgcc tttgccgtgc tgggcgaacc ccggtacgca tttaatttca
    13201 accattttga ttatgtgaac cccgccgcgc caaaaggtgg gcagataacg ttgtcagccc
    13261 tcggtacctt cgataatttc aaccgctatg cactgcgcgg caacccgggc gcacgcaccg
    13321 agcagttgta cgacacgcta tttacgactt ccgatgacga accaggcagt tattacccgc
    13381 tgattgctga aagtgcacgc tatgctgacg attattcctg ggtggaggtc gctattaatc
    13441 cgcgcgcccg ttttcatgat ggttcgccca ttactgcccg cgatgtagag tttacttttc
    13501 aaaaatttat gaccgaaggc gtgccgcaat ttcgtctggt ctacaaaggc accaccgtca
    13561 aagccattgc accgttaacc gtgcgcattg agttagctaa acccggcaaa gaagatatgc
    13621 tgagtctgtt ttcgctgccg gtatttccag aaaagtactg gaaggatcac aaacttagcg
    13681 acccgctcgc cacgcctccg cttgccagtg gtccgtaccg cgttacgtcc tggaaaatgg
    13741 ggcaaaatat tgtctattcc cgtgtgaaag attactgggc agcaaactta ccggtaaacc
    13801 gtggacgctg gaatttcgac accattcgct acgattatta cctcgatgat aatgtcgcct
    13861 ttgaagcgtt taaagcaggt gcctttgatt tgcgtatgga aaacgacgct aaaaactggg
    13921 ccacgcgtta taccggtaaa aatttcgata aaaaatacat catcaaagat gagcaaaaga
    13981 acgaatcagc ccaggatacg cgctggctgg cgtttaatat ccaacgtccg gtattcagcg
    14041 atcgccgggt ccgggaagca atcactctcg cctttgactt tgaatggatg aacaaggcgt
    14101 tgttttacaa cgcctggagt cgcacaaaca gttattttca gaataccgaa tacgcggcca
    14161 gaaattaccc cgacgccgcg gagctggtgc ttctggcacc aatgaaaaaa gatctaccgc
    14221 cagaagtctt cacacaaatc taccagccgc cggtatctaa aggcgatggc tacgatcgtg
    14281 acaacctgtt aaaagccgac acacttctca acgaagcggg ctgggtgctg aagggtcagc
    14341 aacgcgttaa tgccacaacg ggtcagccac tcagctttga attattgctt cccgcaagca
    14401 gcaatagtca gtgggtattg ccgttccagc acagcctgca acggctgggt atcaacatgg
    14461 acattcgcaa ggtggataac tcgcaaatca ccaaccgcat gcgcagtcgc gactatgaca
    14521 tgatgccgcg cctatggcgg gcgatgccgt ggcccagttc cgatttacag atttcctggt
    14581 catcggaata tatcaattcc acttataatg cccccggcgt gcaaagcccg gttatcgact
    14641 cactgatcaa ccaaattatt gccgcgcagg gaaataaaga aaaattattg ccgttggggc
    14701 gagcactgga tcgcgtatta acgtggaatt attacatgct gccaatgtgg tacatggcgg
    14761 aagaccgtct cgcctggtgg gataaattct cccaacccgc tgtacgccct gtttacagac
    14821 tgggtatcga tacctggtgg tatgacgtta ataaagcggc caaactgccg tcagccaggc
    14881 aacagggaga gtagatgggc gcttacctga ttcgccgtct gttgctggtg atcccaacat
    14941 tatgggcgat tatcaccatc aactttttca tcgtgcaaat tgcgcctggc ggtccggtcg
    15001 accaggccat cgccgccatt gagtttggta atgccggagt attacccggc gcaggcggtg
    15061 aaggtgttcg tgccagccat gcgcaaacgg gtgtcggcaa tatcagcgac agtaattacc
    15121 gtggcggacg cggattagat ccagaagtga tcgctgagat cactcatcgc tacggttttg
    15181 ataagccgat ccacgaacgt tacttcaaaa tgctctggga ctacatccgc tttgattttg
    15241 gtgatagcct gtttcgcagc gcctcggtgc tgacgctgat taaagacagt ctgccggttt
    15301 ccatcaccct cggattgtgg agcacgctga ttatctatct ggtgtcgatt ccgttaggca
    15361 ttcgcaaagc tgttcataat gggagccgct ttgacgtctg gagtagcgca tttatcatta
    15421 tcggctacgc cattccggcc tttttgtttg ccatcctgct gattgtcttc ttcgcgggcg
    15481 gcagctattt cgacctgttc cctatacgcg gcctggtttc cgctaacttt gattcgctgc
    15541 cgtggtatca gaaaatcacc gattatctgt ggcatatcac gctgccggtg ctggcgacgg
    15601 tgattggtgg ctttgcggcg ctgaccatac tgacaaaaaa ctcattcctt gatgaagtgc
    15661 gcaagcaata cgtggtgacc gcgcgtgcga aaggggtaag tgaaaaaaat attctctgga
    15721 aacatgtgtt ccgcaacgcc atgctgctgg tgattgccgg ttttccggcg acgtttatca
    15781 gcatgttttt taccggctcg ctgctgattg aggtgatgtt ttcactcaat ggtctgggct
    15841 tactgggcta cgaagcgacc gtctcgcgcg attatcctgt aatgtttggt accttgtata
    15901 ttttcaccct gattggcctg ctgctgaata ttgtcagtga tatcagctat acgctggttg
    15961 atccgcgtat tgattttgag ggacgttaat gtcgcgactc agccccgtca atcaggcccg
    16021 ttgggcgcgt tttcgtcata accgtcgcgg ctactggtcg ttatggattt tcctcgtctt
    16081 gtttggtttg agtttgtgtt ctgagcttat cgccaacgat aaaccgttgc tggtacgtta
    16141 tgacggcagt tggtatttcc cgttgttgaa aaactacagc gaaagcgatt ttggcggccc
    16201 gctggcaagt caggctgatt atcaggaccc gtggctgaaa caacggctgg aaaataacgg
    16261 ctgggtactg tgggcaccga ttcgctttgg tgctaccagt atcaactttg ctaccgataa
    16321 gcccttccct tctccaccct cccggcaaaa ctggctggga acggatgcca acggcggcga
    16381 tgtgctggca cgcattctct atggcacgcg gatctcggtt ctgtttggcc tgatgctgac
    16441 tctctgttcc agcgtgatgg gcgtgctggc gggggcgcta caaggctatt acggcggtaa
    16501 agtcgatctc tggggacaac gctttattga agtatggtcg gggatgccga cgctgttttt
    16561 gattatttta ctttccagcg tcgtacagcc taacttctgg tggctgctgg caattactgt
    16621 cttgtttggc tggatgagtc tggtcggcgt ggtgcgggcg gagtttttac gtactcgtaa
    16681 tttcgactac attcgtgcgg cgcaggcgct tggcgtcagc gatcgcagta tcatcctgcg
    16741 tcatatgttg cctaatgcca tggtcgcgac cctcaccttt ttaccgttta ttttatgtag
    16801 ttcgatcacc accctgacct cactcgattt cctcggcttc ggtctgcagc tcggttcacc
    16861 gtcactcggt gaactgctgt tacaagggaa aaataacctt caggctccgt ggcttgggat
    16921 caccgccttc ttgtcggtgg cgatattatt gtctttgctg atctttattg gtgaagccgt
    16981 ccgcgacaca tttgatccta ataaggcggt gtagcatgac gcaaactctg ttagcgattg
    17041 aagatttgtc ggtgggtttt cgccatcagc aaaccgtacg tacagtagtc aatgatgttt
    17101 cactacagat tgaggctggc gaaacgctgg cgctggtggg tgagtcaggt tcaggcaaaa
    17161 gcgttaccgc gctgtcaatt ttacgcctgc tcccttcccc gccggttgaa tatctctccg
    17221 gcgatattcg ttttcgtggc gaatcgctgc ttcatgccag cgatcaaacg ttgcgcggtg
    17281 tacgcggtaa taagatcgcc atgatttttc aagagccgat ggtgtcgtta aatccattgc
    17341 ataccctgga aaaacagctt tatgaagtgc tttcactcca ccgcgggatg cgtcgggaag
    17401 cggctcgagg cgaaattctt aactgccttg atcgcgttgg tatccgccag gcggcaaaac
    17461 ggctgacaga ttatccgcat cagctctccg gcggcgaacg ccagcgggtg atgattgcga
    17521 tggcgctgtt aacgcgaccg gaattattaa ttgccgatga accgaccacc gcactggacg
    17581 tctctgtcca ggcgcagatt ttacagctgt tgcgcgaact gcaaggcgag ctgaatatgg
    17641 gcatgctgtt tattactcat aacctcagca ttgtcagaaa actggcccac cgcgtggcgg
    17701 taatgcaaaa cggtcgctgt gtcgagcaaa attacgccgc tacgctattt gcctcaccca
    17761 ctcatcctta cacacaaaag ctactcaaca gtgaaccgtc aggcgatcca gtgccgttgc
    17821 cagaacctgc ctcaacgttg ctggatgttg aacagcttca ggttgccttc cccattcgca
    17881 aagggatttt gaagcgcatt gtggatcata atgtggtggt gaaaaacatc agttttacgc
    17941 tacgagcggg tgaaacactg ggtttagtgg gcgagtccgg ttccgggaaa agtacgacgg
    18001 gactggcgct gctgcgactg attaattctc agggcagcat catctttgac ggtcagccac
    18061 tgcaaaattt aaatcgccgc cagctgttac ctattcgtca tcgcattcag gtggtatttc
    18121 aggatccaaa ctcctcgctc aacccacgac tcaacgtttt gcagattatt gaggaaggct
    18181 tacgggttca ccagccgacg ctttctgccg cacaacgcga acaacaagtg atagccgtga
    18241 tgcatgaagt gggattagat cctgaaacac gccaccgtta tccggcggag ttctctggtg
    18301 gtcagcgaca acgtattgca attgccaggg cattaattct taagccctcg ctgatcatac
    18361 ttgatgaacc gacatcatca ctcgacaaaa cggtacaggc gcaaatattg acgctattga
    18421 aatcattgca acaaaagcag caactggcct atttgtttat cagccacgat ttgcacgttg
    18481 tccgcgcgtt atgtcatcag gttatcgtac tgcgacaagg ggaagtagtg gaacaaggac
    18541 cgtgcgcgcg cgtgtttgcc gcaccgcagc aggagtatac gcgtcagcta ctggcgttga
    18601 gctgacgctt aaaaaggatt gtagtttgaa aagggttcgg caattgccac accaaaattt
    18661 ttcaatcggc atgttgcagc aaactcgtcc tggcgattta caaacaggca cggctcacct
    18721 tcacactcca gcaccgaaca cggaacttcg atgtcgctta acgcctggct tagtttgtac
    18781 atcaccgacc atgcattatc accatccggg ctaagcaatt taagcgccac caggctgttg
    18841 tcaccgcacg gtccattttg cggaatcggt tcaaccttcg aacctgcgaa accagcagac
    18901 cagcgaaagt tctgcggtag acgatggacg attgagagtt gtaatgaagt cacttatttt
    18961 ccccggaagc acatttactt cacaatttgt ttacatcaat tttaacacat catcaacaat
    19021 ccgtctttat acagatcgta aagattgatg cctcgcctgc gtggcctcta tggctctgat
    19081 ttaagtaata tctgcgggcg tggtcacgtt tgcggggcta tatgtacccg tttctgcgat
    19141 ctaactcaac ctttttaact acaatgatgt gactttttac ataaattgat tttacataaa
    19201 ataaacatat atcgggggaa tgatagattt gtggttgaca tgcatcaaca aaggaagcct
    19261 tttagcttcc tcgttgtgca atagatcacc gttttttcgg tcgactggcg tacagacaga
    19321 agagaatgga gctgcttgcg cagaatgcaa ttgaccaaat catcggccat gcagagttaa
    19381 aggtcgcaag agaaagcaat gcgccaacaa ttgcccctat gccaaaacgg aaggttcctg
    19441 ccagcgaaga tgccgttccc gccatatggg gaaactcatc aagaatgacc gccatcgcat
    19501 tggatgacac catcgacaca cagcccacaa acgccgcaac gccaaccacc agcgaccaga
    19561 atcccagccc cagcagcgca ctgatgacca tccacgctgc cataataaat tgtatccaca
    19621 accccgagcg gaacatattt aacgcgccaa tgcggcgaac gaagcggctg ttaaagatgg
    19681 tcatcacgaa caggaaaaca atgtttagtg caaagtaata accaaagttt tccggcgcga
    19741 cgtggttaat ttcaatgtag acaaacggtc cggcgctcag gaacgagaat attccggcaa
    19801 agctgaaacc gctggccagc atataactca ggacacgctt atgacggaac agcgccgcaa
    19861 agttaccaat agtagtacga atgtgaaaag gctggagacg ctccggtggt aaggtttctt
    19921 tgatcagaaa gaagatcatt gccgaagcca gaatcgccgc cacggcgagg atccagaaga
    19981 tgtaatgcca gctcagccac accagcaccc agccgccaac tatcggtgcc atcagcggtg
    20041 caatggtcgt caccagcatg acaccgcgag aactcttctt tcgggtagat atcacgcatc
    20101 aaagcgttga taaccatgct ggccgcagcc gcagccagcc cgtggaaaaa acgcatcaca
    20161 atcagctgat cgatggtttg tgccaacgca cacgccaccg cggcggcggc aaacaccagc
    20221 gtaccgccga gcaccaccgg cttacgcccg aagctgtctg ccatcggccc gtagattaac
    20281 tgccccaacg caaagcccag aatataagta ctgagggtca tctgcgtact gcccgccggt
    20341 acgccaaact gcgctgaaat taccggtagc gcgggcagat acatatcaat cgacagcggc
    20401 atcaacatgg ccagcaggcc aaggataaaa acaatagcaa acgacgaatg ctgtcgggtg
    20461 gtcacaacgg gctcctgaaa gtcattgaaa agttagacga cgctggcaat ttcttcttca
    20521 gttaacggac gatattcacc gggggctaaa tcagcatcca gcgtaatacc gccaatacgt
    20581 tcacgatgca gctcaaccac gtggttaccc acggcggcga acatgcgttt cacctgatga
    20641 taacgccctt cgctgatggt cagacgaacc tgcgttgggg taatcacttc cagcaccgca
    20701 ggcttagtga gatctttttc gttatgcagc tgcacgcctt tagcaaattg ctctgccgta
    20761 tcgtcagcta caggtgattc cagtgtcacc agataggtct tctcgcaatg atggcgcgga
    20821 gaagtaatgc ggtgcgacca ctgaccatca tcagtcatca gcaccagacc ggtggtatcg
    20881 atatccagac gtcctgcggc gtgcagtttc caggctaccg gttcatccag aaaatagagc
    20941 accgttgggt gatcagggtc gtccgtggag caaacatagc cctgaggctt attgagcatg
    21001 aagtaacgtg gaccatgttg ctgcgccagc gggttgccat cgtaagcgac atcatgttca
    21061 ggaagcagtt tgaacgctgc attacgaaca atttcgccat cgacggtgac acgattgccg
    21121 cggatttcac gcccggcaat agcacggcta acgccgagtt gctgtgcgat aaatttatca
    21181 agtcgcatgt gtgtgatttt gcctgtaaaa acggaggtcg ggcattgacc cgaaaatctg
    21241 aactgttgtc tgcccagtat agcggtctaa taacatccct caagggaaaa agatccatgg
    21301 catactatta gcagaataat ctacctacgc gagaccatga tttttacact ccgcccatat
    21361 cagcaagaag ccgtggatgc cacgctcaac cattttcgtc gtcataaaac ccctgccgtt
    21421 atcgtgctgc ccaccggcgc aggtaaaagc ctggtgattg ccgaactggc acggctggcg
    21481 cgtggtcgtg ttctggtgct ggcacacgtc aaagaactgg tggcgcaaaa ccatgcaaag
    21541 tatcaggcgc tggggctgga agccgatatt tttgccgctg ggttaaagcg caaagagagc
    21601 cacggtaaag tggtatttgg cagcgtgcag tcggtcgctc gtaatcttga tgcctttcag
    21661 ggtgaatttt cgctgttgat tgtcgatgaa tgccaccgta ttggtgacga tgaagagagc
    21721 cagtatcagc aaatcctcac tcacctgact aaagtgaatc cccacttacg cctgctgggg
    21781 ctgactgcca cgccttttcg attgggcaaa ggctggatct accagttcca ttatcacggc
    21841 atggtacgcg gcgatgagaa agcccttttc cgtgactgca tttatgagct gccgctgcgt
    21901 tatatgatta aacacggcta tctgacgccg ccagaacgac tggatatgcc agtagtgcaa
    21961 tacgatttca gccgcttgca ggcacagagt aacgggctgt tcagcgaagc tgatctcaac
    22021 cgtgagctga aaaaacagca acgcattacg ccacatatca tcagccagat catggagttc
    22081 gccgaaaagc gcaaaggggt aatgattttc gccgccaccg ttgaacacgc aaaagagatt
    22141 gtgggattac tgcctgccga agatgcagca ctgattactg gcgacacccc cggcgctgag
    22201 cgcgatgtgt taattgaaga ttttaaagcc cagcgttttc gctatctggt caacgtcgcg
    22261 gtactgacca ccggatttga cgccccgcac gtcgatctta tcgccattct gcgtcctacc
    22321 gaatcagtga gtctttacca acaaattgtc gggcgcggtc tgcgtctcgc tcctggcaag
    22381 actgattgct taattcttga ttatgcgggt aatcctcacg acctctacgc gccggaagtt
    22441 ggtacaccga aaggcaaaag tgacaacgtc ccggtacagg ttttctgccc tgcctgcggt
    22501 tttgccaaca ccttttgggg gaaaacgacc gccgacggga cattgattga acactttggt
    22561 cgtcgctgtc agggatggtt tgaagatgac gacggccatc gcgaacagtg tgacttccgt
    22621 ttccgtttta aaaattgccc gcaatgtaac gcggaaaacg atattgccgc ccgccgctgc
    22681 cgcgaatgtg acacggtact ggttgatccg gatgatatgt taaaagcggc gctacgactg
    22741 aaagacgcgc tggtattacg ctgtagcggc atgtctttac agcatgggca cgacgagaaa
    22801 ggcgaatggt tgaaaatcac ctattacgat gaagacggcg cggatgtgag tgagcgtttc
    22861 cgtctgcaaa cgcccgccca gcgaactgcc ttcgagcagc tttttatccg cccgcatacg
    22921 cgcacaccgg gcatccctct gcgctggatc accgccgccg atatcctcgc ccagcaagcc
    22981 ttactgcgac atccggattt tgtcgtcgcc cgcatgaaag gtcagtactg gcaggtgcgt
    23041 gaaaaagtgt tcgattacga aggtcgtttt cgtcgggcgc acgaattacg cggttaatgg
    23101 tagttttgat tgatgtataa ggcgattgag tatagaatct cgcccgcttt tgcatacgca
    23161 aagcagatca cttacctgtt gctgggtcgc ctgtagcagg attaatttaa gagagaaaga
    23221 aatgtttact atcaacgcag aagtacgtaa agagcagggt aagggtgcga gccgccgcct
    23281 gcgtgccgct aacaagttcc cggcaatcat ctacggtggc aaagaagcac cgctggctat
    23341 cgagctggat cacgacaaag tcataaacat gcaagctaaa gctgaattct acagcgaagt
    23401 tctgaccatc gttgttgacg gtaaagaaat caaagttaaa gctcaggacg tacagcgtca
    23461 cccgtacaaa ccgaagctgc agcacatcga cttcgttcgc gcttaattgc tgaataagtt
    23521 gtaaaaaacc ccgctccggc ggggtttttt gtatctgcag attatgcctg attacggtat
    23581 tgctattttt tgcaggccag ataaggcgtt cacgccgcat ctggcattca gaacacaaaa
    23641 ccgattaatt gccgccagac gtccggcgct gcaattggtc gcgcaaattc ggcggcgtgc
    23701 ctttaatggt caaagtatcg gttgctggat cccagaagat gcgttcacct aacagcatcg
    23761 catcaaagtt aatagtcaag ccaccgccgc taccggcaaa cttcgtcaac tgacgcagtg
    23821 tgctacggtc tgccgggaag ctctcttcca gttcgtagcc tttttcagcc gcaaacttcg
    23881 tgaagctcac ttcgcttacg cctgccagct ctttcgacag cgattccagt tcgatctctt
    23941 cgcctgcctg cagctgctca ttacagtagc tataaacctg ctggcgcacg ttctgtcgct
    24001 ctgctttatc cagttgtgct tcggcagtga aatcatcaac cgcttgcaac agcccacggt
    24061 tttgcgcttt cgcgttcaat ccttcgctgg ccccgaggaa atccataaag aaatccgcca
    24121 ctttgcgccc tactcgccct ttcaggaaag tgagatagcg ggtggactct ggattggttt
    24181 cccattcggt taaatcgata cgcgcaacaa tatccgcatg attgatatca agataatggg
    24241 ttgggttgat gtcgagattt tcgttaacgc gcatactgct caggttgctc agaactgcca
    24301 ccagcagata ctccaccgcc agataacggt agtggcaaaa cagcacgaat ccaccgtcag
    24361 caaaaggata tttcgctaat tcgtcacgca ggcgcccggt tgccgcgcgg ctaaatgcca
    24421 gaaagtcctc ttcgccctga cgctgtaagc gcagcgtctg cgccagttca ctctcttcgc
    24481 taaacaagcc gtaagcttta tttttggcgc tatagacccg atgcagttct gccaccatct
    24541 caacgacggt ttctgtcggt tccagcaatg aatcgcgcaa caccagctca aggttctgct
    24601 catcacgctt gataagctgg tgcagagcaa tctggttgat atccagactc atgataaact
    24661 ctcctttaag accgggcggt attcaaccac cgccggttaa gcgacgcaat aaaagatggc
    24721 ggtcatttta cagaaggcag cgtaacgaga atgatttaac gcataaaaaa gcagaaaaaa
    24781 aaccgttgct acggtaatat gttgcccttt catcaactaa ctgatttcga tttatgccac
    24841 aaatttcccg ctacagtgat gaacaggttg aacaattgct cgcagagctg ctcaacgtac
    24901 tggaaaaaca taaggctccg accgaccttt ccctgatggt gttaggcaac atggtcacta
    24961 accttatcaa caccagcatt gccccggccc aacgccaggc aattgccaac tcttttgccc
    25021 gcgccttaca gtcctctatc aacgaagaca aagcgcacta agggaaacag ataacaggtt
    25081 atggtaactc atcgtcagcg ctaccgtgaa aaagtctccc agatggtcag ttgggggcac
    25141 tggtttgcac tgttcaatat tctgctttcg ctcgtcattg gcagccgtta cctgtttatc
    25201 gccgactggc cgacaacgct tgctggtcgc atttattcct acgtaagcat tatcggccat
    25261 ttcagcttcc tggtgttcgc cacctacttg ctgatcctct tcccgctgac ctttatcgtc
    25321 ggctcccaga ggctgatgag gtttttgtcc gtcattctgg caacggcggg aatgacgcta
    25381 ttactgatcg atagcgaagt ctttactcgt ttccatctcc atcttaatcc catcgtctgg
    25441 cagttggtta tcaacccaga cgaaaatgag atggcgcgcg actggcagct gatgttcatc
    25501 agcgtgccgg ttattttatt gcttgaactg gtgtttgcga cgtggagctg gcaaaagctg
    25561 cgcagcctga cgcgtcgtcg acgcttcgcg cgcccgctgg ccgcattctt atttatcgcc
    25621 tttatcgcct cgcatgtggt gtatatctgg gccgatgcca acttctatcg cccgatcacc
    25681 atgcagcgcg ctaacctgcc gctttcgtac ccgatgacgg cgcgacgttt ccttgagaag
    25741 catggcctgc ttgatgcgca ggagtatcaa cgccgtctta ttgagcaagg taatccagac
    25801 gccgtttccg tacagtatcc gttaagcgaa ctgcgctatc gcgatatggg caccgggcag
    25861 aatgtgctgt tgattactgt cgatggcctg aactactcac gcttcgagaa gcagatgcct
    25921 gcgctggcag gttttgctga gcaaaatatt tcgttcacgc gccatatgag ctccggcaac
    25981 actacagaca acggcatctt tggcctgttc tatggcatct cgccgagcta tatggacggc
    26041 attctgtcga cccgtacccc tgcggcgtta attactgcgc ttaatcagca aggctatcag
    26101 ctgggattat tctcgtcaga tggctttacc agtccgctgt atcgccaggc attgttgtca
    26161 gatttctcga tgccgagcgt acgcacccaa tccgacgagc agaccgccac gcagtggatc
    26221 aactggctgg gccgctacgc acaagaagat aaccgctggt tctcgtgggt ctctttcaat
    26281 ggcactaaca ttgacgacag caatcagcag gcatttgcac ggaaatatag ccgggcggca
    26341 ggcaatgtcg atgaccagat caaccgcgtg ctcaatgcac tgcttgattc tggcaaactg
    26401 gacaatacgg ttgtgattat cactgccggt cggggtattc cgctgagcga agacgaagaa
    26461 acctttgact ggtcccacgg tcatctgcag gtgccattag tgattcactg gccaggcacg
    26521 ccggcgcagc gtattaatgc gctgactgat cataccgatc tgatgacgac gctgatgcaa
    26581 cgcctgctac atgtcagcac acctgccagc gaatattcgc aaggtcagga tttgttcaac
    26641 cctcaacgcc gtcattactg ggtcactgca gcggataacg atacgctggc aattaccacc
    26701 ccgaaaaaga cgctggtgct gaacaataac ggtaaatacc gcacttacaa cttacgtggt
    26761 gaaagagtga aagatgaaaa accacagtta agtttgttat tgcaagtgct gacagacgag
    26821 aagcgtttta tcgctaactg attaattata aatcagttag cgaaatatct tacttgcaat
    26881 cggtgtggaa aacggtagta ttagcagcca cgagtcggca cgtagcgcag cctggtagcg
    26941 caccgtcatg gggtgtcggg ggtcggaggt tcaaatcctc tcgtgccgac caaaaatccc
    27001 aagaaaaaac caacctttac ggttggtttt tttatatctg caattaattt gataaacaga
    27061 ccgtgacaca tcacagcctg tttattttct gttatcagaa cgtccagacc actcccgcct
    27121 gagtattcca cggcgattct acccctgcgc cattgccata gctgactgac aaatgaccgc
    27181 ttaacgtcgg ggtaaacgat gaccttatcc cagcctgata aacgccaggg gttccagcca
    27241 catcattatt aaatttgcca tcgtcattaa ctttcacatg gttagaatcg gcgtattcct
    27301 gacgtacggc ggctttcagc caaggttcca gcgtcgtacc attttgcagg tccatgtgat
    27361 agcttaccgc cgttcccgct tcagcgcgta atatccgggt atttcccaca tcagcgcgca
    27421 tgccgtttga taacgtgtag tcctgaccat ctgtggtaaa gccggtaaag gccagatagg
    27481 gtctaacact ccacaatccg tcaacccaac ggaacccgct ctcaacatga gcacccgcgc
    27541 cgttactatt gtaatcgcca aacgctgttg ccccattact catcttgcca tggatggtgt
    27601 tggcaaaacg gtcaactttc accaccccat caacataggc accgttctga tgctcccaac
    27661 cggcataagc ccccagggta tagctatcga tattaccttt tccgccgcga tcaaaaccaa
    27721 tatcagaatg agagtaacca aagaacaagc cgcgaattgt actgctttct tcacgggaga
    27781 aacggctatc gataccgagc gtcaggcccg tcaatgtttg ctcaaaacca gctcccgcat
    27841 cagtggtcac gttgttgcgg gtgttaattg ccgaactcca catcgccgta tcgtaactaa
    27901 cgctttttac gctaccaaga cgctcacgca cggtgtccag ttctgcatca aataccagcg
    27961 gttgtgcggc cgccatattc agcacatcag tggttgaagg ggtaatttgc gcgcgattct
    28021 ctgccaaact ccagctatgg ttgccattat ccagcaaggt atattcatac gtaccgatat
    28081 caacaacgcc tccggcattg cccaacgtaa atgcagcatc accgccgccc gttgttacca
    28141 gtgtaaggct atctcctgct gccgggctgg caccggtgtc cgtcacgaat attttgaaat
    28201 cacctgttgc ctgaccggtg acgttgagct gatcgctctg atgattagcc atatcggtac
    28261 gcatataaaa attgccgttt cccgacaggg tattggtggt caacgtaatg aaattttccg
    28321 cacttgccgt cactgatgaa cgagtcactg gctcatccat cataatcaca tttgcgtcag
    28381 acatcgcaag gttggctaag ttgaggaggg tgttttggtt cgtcgtagtg atatcggcaa
    28441 tgatggccca tacgctattt tcgagcgaaa cgtccgcttt gctggtatcc acggcaccat
    28501 gcgttctaaa agaagcgccc tcagaaacca ctaccttacc caccaacata gcgggtgcat
    28561 aatttatttg cggcttcatg acctcaagaa tgccatcatt ccctctgact gacacgttaa
    28621 ccattgtgcc agcccagaca ttagcgcggc cattgttgat aaccatattt tcagagatgg
    28681 ctttagagga atacgtgata cttccattct ggtctgatcg accgagatca tataccgcat
    28741 ttgcctgcac tttcgtacca gtatcctttc ccagcgattg catagtggca tgctcatcaa
    28801 ggatagtatc aatggcctgc gtgtcctcca taacaatgag cccggaacca tcatccagtt
    28861 cataattttt tgacacacca tcttttatac taaattggcc tttactgttt gtaccactca
    28921 cttccagcgc attcgttgag acaattaatt ttccgcctgc ttttttatca acgccagttg
    28981 cagtcccgcc atccataacc tccagtaagc cgccactatc tacagtagta ttataagcga
    29041 agtcattttc ttcaactcgc aaacttccgc cgttttccaa cagcatattg ttagcaatac
    29101 cattcttgat ttcgaactga ccgagacggt ttgttccgaa tgcctccatg acccgcgtgc
    29161 ttgctttaat agcaccgcct gctttctgat ctaccgcaat cgctaatccc ccctctttaa
    29221 cctccagtaa tcctcccttt tcgatagcgg caaggacggt aatcccatct ttttcaacga
    29281 ttaagcgccc gcctttaatc gtgggatcat tcgctgcgcc ataaacctgt agcacaccat
    29341 tattgagggt agtctggttt gccgcgccac ccatttgaac aatttgataa ccgtcattta
    29401 atactgagta ttctgcggta ccattcattt caatgtactg ataccctccg tt
//
LOCUS       DAJVUN010000033        29296 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.033, whole genome shotgun sequence.
ACCESSION   DAJVUN010000033 DAJVUN010000000
VERSION     DAJVUN010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29296
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.033"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            285..1943
                     /locus_tag="OQQ76_001197"
     CDS             285..1943
                     /locus_tag="OQQ76_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HCS1967766.1"
                     /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL
                     LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP
                     CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR
                     DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH
                     YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA
                     KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE
                     HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV
                     INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
                     RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAI
                     HRSSKPDLAIEVAIEAGRRGVDSVPTLLKKMFSRVLWLARGRAD"
     gene            complement(1940..2896)
                     /locus_tag="OQQ76_001198"
     CDS             complement(1940..2896)
                     /locus_tag="OQQ76_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK/YbjX family protein"
                     /protein_id="HCS1967767.1"
                     /translation="MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQ
                     KFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEAL
                     RYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILF
                     RNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVM
                     EAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHY
                     RLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG"
     gene            3047..4162
                     /gene="macA"
                     /locus_tag="OQQ76_001199"
     CDS             3047..4162
                     /gene="macA"
                     /locus_tag="OQQ76_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308991.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide transporter subunit MacA"
                     /protein_id="HCS1967768.1"
                     /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG
                     DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK
                     EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQI
                     GTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA
                     DMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY
                     ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR
                     EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ"
     gene            4159..6105
                     /gene="macB"
                     /locus_tag="OQQ76_001200"
     CDS             4159..6105
                     /gene="macB"
                     /locus_tag="OQQ76_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding
                     protein/permease MacB"
                     /protein_id="HCS1967769.1"
                     /translation="MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASG
                     SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT
                     AEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM
                     NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRD
                     GEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM
                     LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD
                     DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ
                     EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL
                     RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD
                     GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS
                     DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTAT
                     GILFGWLPARNAARLDPVDALARE"
     gene            complement(6178..6402)
                     /gene="cspD"
                     /locus_tag="OQQ76_001201"
     CDS             complement(6178..6402)
                     /gene="cspD"
                     /locus_tag="OQQ76_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspD"
                     /protein_id="HCS1967770.1"
                     /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA
                     GQSVQFDVHQGPKGNHASVIVPVEVEAAVA"
     gene            6725..7045
                     /gene="clpS"
                     /locus_tag="OQQ76_001202"
     CDS             6725..7045
                     /gene="clpS"
                     /locus_tag="OQQ76_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HCS1967771.1"
                     /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI
                     DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
                     LEKA"
     gene            7076..9352
                     /gene="clpA"
                     /locus_tag="OQQ76_001203"
     CDS             7076..9352
                     /gene="clpA"
                     /locus_tag="OQQ76_001203"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HCS1967772.1"
                     /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL
                     EACSVDLVALCQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE
                     VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE
                     EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV
                     GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ
                     DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD
                     RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR
                     HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK
                     NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
                     SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI
                     EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN
                     STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV
                     SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVELDKEKN
                     ELTYGFQSAQKHKAEAAH"
     gene            complement(9696..9783)
                     /locus_tag="OQQ76_001204"
     tRNA            complement(9696..9783)
                     /locus_tag="OQQ76_001204"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9747..9749),aa:Ser,seq:gga)
     gene            complement(10037..10255)
                     /gene="infA"
                     /locus_tag="OQQ76_001205"
     CDS             complement(10037..10255)
                     /gene="infA"
                     /locus_tag="OQQ76_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HCS1967773.1"
                     /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVTVELTPYDLSKGRIVFRSR"
     gene            complement(10540..11244)
                     /gene="aat"
                     /locus_tag="OQQ76_001206"
     CDS             complement(10540..11244)
                     /gene="aat"
                     /locus_tag="OQQ76_001206"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HCS1967774.1"
                     /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR
                     GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC
                     ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS
                     RMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR
                     LPNNFWVPRCLFSPQE"
     gene            complement(11286..13007)
                     /gene="cydC"
                     /locus_tag="OQQ76_001207"
     CDS             complement(11286..13007)
                     /gene="cydC"
                     /locus_tag="OQQ76_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HCS1967775.1"
                     /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS
                     ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK
                     LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMMVTIGLSFLDF
                     TLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA
                     SDRYRTQLENTEIQWLEAQRRQSELTALSQVIMLLIGALAVILMLWMASGGVGGNAQP
                     GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTLTRVA
                     DRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDP
                     QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESL
                     RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDAT
                     TESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY
                     YQFKQGL"
     gene            complement(13008..14774)
                     /gene="cydD"
                     /locus_tag="OQQ76_001208"
     CDS             complement(13008..14774)
                     /gene="cydD"
                     /locus_tag="OQQ76_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HCS1967776.1"
                     /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF
                     MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV
                     LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP
                     SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF
                     GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL
                     DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH
                     PQRGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPSGQRAVLVGRSGSGKSSL
                     LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDA
                     SEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARVLLNPCSLLL
                     LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR
                     YAELSVAGGPFATLLAHRQEEI"
     gene            complement(14897..15862)
                     /gene="trxB"
                     /locus_tag="OQQ76_001209"
     CDS             complement(14897..15862)
                     /gene="trxB"
                     /locus_tag="OQQ76_001209"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HCS1967777.1"
                     /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL
                     TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG
                     EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE
                     EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRMLEEVTGDQMGV
                     TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ
                     TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK"
     gene            16407..16901
                     /gene="lrp"
                     /locus_tag="OQQ76_001210"
     CDS             16407..16901
                     /gene="lrp"
                     /locus_tag="OQQ76_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HCS1967778.1"
                     /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP
                     CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE
                     IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV
                     IKTR"
     gene            17036..21007
                     /gene="ftsK"
                     /locus_tag="OQQ76_001211"
     CDS             17036..21007
                     /gene="ftsK"
                     /locus_tag="OQQ76_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HCS1967779.1"
                     /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF
                     NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWCHQS
                     SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS
                     SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE
                     DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEE
                     EIIYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA
                     APVEPVTQTPPVTSVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQ
                     YNEPLQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF
                     APQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEE
                     KRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKAT
                     LATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQ
                     RAAEEKAREARRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNA
                     EDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFT
                     PIVEPVQQPQQLVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQQVAPQPQY
                     QQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALE
                     QMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTV
                     AVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVV
                     ADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIP
                     HLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPD
                     PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHL
                     VLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPN
                     STLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPL
                     FDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPP
                     PFD"
     gene            21162..21773
                     /gene="lolA"
                     /locus_tag="OQQ76_001212"
     CDS             21162..21773
                     /gene="lolA"
                     /locus_tag="OQQ76_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010354356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HCS1967780.1"
                     /translation="MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQK
                     VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL
                     KDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQ
                     FSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK"
     gene            21784..23127
                     /gene="rarA"
                     /locus_tag="OQQ76_001213"
                     /gene_synonym="mgsA"
     CDS             21784..23127
                     /gene="rarA"
                     /locus_tag="OQQ76_001213"
                     /gene_synonym="mgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein
                     RarA"
                     /protein_id="HCS1967781.1"
                     /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA
                     IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR
                     NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
                     LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM
                     ADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY
                     WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA
                     QAIVYLACAPKSNAVYTAFKAALADVRERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA
                     HDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR"
     gene            23218..24510
                     /gene="serS"
                     /locus_tag="OQQ76_001214"
     CDS             23218..24510
                     /gene="serS"
                     /locus_tag="OQQ76_001214"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HCS1967782.1"
                     /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT
                     ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALT
                     IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS
                     RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF
                     HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR
                     DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG
                     FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG
                     LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG"
     gene            24749..27193
                     /gene="dmsA"
                     /locus_tag="OQQ76_001215"
                     /pseudo
     CDS             24749..27193
                     /gene="dmsA"
                     /locus_tag="OQQ76_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415414.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit A"
     gene            27204..27821
                     /gene="dmsB"
                     /locus_tag="OQQ76_001216"
     CDS             27204..27821
                     /gene="dmsB"
                     /locus_tag="OQQ76_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HCS1967783.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYGAPQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK
                     KHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            27823..28686
                     /gene="dmsC"
                     /locus_tag="OQQ76_001217"
     CDS             27823..28686
                     /gene="dmsC"
                     /locus_tag="OQQ76_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     DmsC"
                     /protein_id="HCS1967784.1"
                     /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV
                     IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW
                     LLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMF
                     MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAA
                     LVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYG
                     LHMTVGMAVAS"
     gene            complement(28721..29296)
                     /locus_tag="OQQ76_001218"
                     /pseudo
     CDS             complement(28721..29296)
                     /locus_tag="OQQ76_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309009.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
BASE COUNT         7258 a         7210 c         7910 g         6918 t
ORIGIN      
        1 tgatttaggg caacagcggg ttgccccata tagtcatttg tctgattgac agtgtagtgc
       61 acgcaaaaga tttaatcctt taggcgtaat aaaaaataat atatcatgct aattatttga
      121 ttttgttgtt tttgcagact tatcagcaag agggagtata acgcgattat tcgctcattt
      181 ttcagacatt tgccatgctt aaatgtgatg tcatcacgta ttagcaaggc ctttcccgtt
      241 atactgccag cgtaaaggat aagtcacata tttctggagg ggatatgatt cttgagcgcg
      301 ttgaaattgt gggttttcgc ggtatcaacc gtttgtcgtt gatgctggaa caaaacaacg
      361 tcctgattgg ggagaacgcg tggggtaaat ccagcttgct ggacgcctta accctgctgc
      421 tatcgccaga atcagatctc taccattttg agcgcgacga tttctggttc ccgccgggag
      481 atatcaacgg gcgagaacat catctgcata ttattttgac cttccgcgaa tcgctgccag
      541 gccgacatcg ggttcgccgt tatcggccgc tggaagcgtg ctggacgcca tgcaccgatg
      601 gctatcaccg tattttttat cgtctggaag gggagagtgc ggaagacggc agcgtgatga
      661 cactgcgcag ttttctcgat aaagacggac atccgattga tgtcgaggat attaacgatc
      721 aggcacgcca tctggtgcgt ttaatgccgg tgctgcgctt gcgtgatgcc cgttttatgc
      781 gccgtattcg taacggcacg gtgccaaatg tccctaatgt ggaagtcacc gcgcgccagc
      841 tcgatttcct cgcccgtgag ttatcctcac atccgcaaaa tctctctgat gggcagattc
      901 gtcagggact ttccgcaatg gtacagctgc ttgagcatta tttctctgag cagggggccg
      961 gacaggcgcg atatcgttta atgcggcggc gggccagcaa tgagcaacga agctggcgct
     1021 atctggacat catcaaccgg atgattgacc gacctggagg gcgctcgtat cgggttattt
     1081 tgctcggcct gtttgctact ttattgcagg caaaaggcac attgagactg gataaagacg
     1141 cgcgtccatt gttgctgatc gaagatccag aaacccgttt acaccccatt atgctttcag
     1201 ttgcctggca tctgttgaat cttctgccat tgcagcgcat tgccaccacc aactcgggtg
     1261 agttgctttc gttaacgccg gtagagcatg tttgccgact ggtacgtgag tcctcgcgcg
     1321 ttgccgcctg gcgtctgggg ccgagtggct tgagtaccga agatagccga cgcatatcct
     1381 ttcacattcg ttttaaccgt ccgtcatcgc tgtttgcacg ctgctggttg ctggtggaag
     1441 gggaaacgga aacctgggtt atcaatgaac tggcgcgtca gtgcggacat cattttgatg
     1501 ccgaagggat caaggtcatt gagtttgccc agtccgggct aaagccactg gttaaatttg
     1561 cccgccgaat ggggattgaa tggcatgtac tggtcgatgg cgatgaagca gggaagaaat
     1621 atgccgctac ggtacgcagc ctgttgaata acgatcggga agccgaacga gaacatttaa
     1681 cggcgttacc ggcgctggat atggaacatt ttatgtatcg ccagggattt tccgatgtgt
     1741 tccaccgcgt ggcgcaaatc ccggaaaatg taccgatgaa tctacgcaaa attatctcga
     1801 aagcgatcca tcgctcttcc aaacccgatc ttgccattga agtggcaata gaggcaggac
     1861 gtcgtggtgt ggactccgta ccgacgctgc tgaaaaaaat gttctcacgc gtgctgtggc
     1921 tggcgcgcgg tcgcgcggat taaccgcgaa acatcgtggc catttgtggc tgaatagcgt
     1981 cgagcatctc atagcgccga cggtattcag cccgtttttt actggcgatt tcggcaatct
     2041 cttttcgtgc tatctgtgct ggaaggcggt aatggcgttc agcatcacat acgccgccaa
     2101 ccgattccca gaaagcgttg taatcagcgt ggatcttgcc ttctttatcg cgataacgca
     2161 ggctgcggta aatatgcgtt tcattgctga cggcaataat ctgctctacc tgcaaacgtt
     2221 gggcaaacag acaggccgct tccatcacga ggcgtttggg aaatagcccg tggcaggctt
     2281 tcgtcgcatt ctggatttcc tgatgtggaa tttcccattt tgcgccttgc agtccgccaa
     2341 taaacatcgt tcttttcccc tgatattcac acagggtaaa cgtgatctct gccagaggaa
     2401 taccttcgct gttgcgaaac aggattgtgc tgtcaccttc tttatccatt gagatcatca
     2461 tggtcagctc aagcgtgaac tgctcgccgt ttttgccttc cagcttcgcc agttgcagcc
     2521 cgggggtatt caaatataag ctgaattctt ccgccgacat acatccgcgg agtaacgcat
     2581 aatggtaacg taacgcctcc agcaattgct tacggctaag attcgccgca aggtaagggc
     2641 gatgcagacg cacaggcagt cgcggctggc gcgttaacaa cacattgaga ttaggccagt
     2701 gggaaagttc gttcatccac tcaacgctta aacgcggcat aatcaacgag cgcagcaaaa
     2761 atttctggcg aaaactacgg cgatgccaga atttacccgg ccgacactgt ccacgtgcca
     2821 gactaagaaa aagtgacagg ctgctgagag attcagatgg cgtaaaggtc cgttcagtta
     2881 gctgcgacat attcatgaaa tcaatggtta tacatgacgt cgatttcacc attgcgtatc
     2941 ttaaccaaac atcaatagtg tgattactaa cgtaaatttt agggttttgt tgatatttcg
     3001 ttgaagttaa tgacccggat tggcatatgg agtattcaga atatttatga aaaagcggaa
     3061 aaccgtgaag aagcgttacg ttattgcgct ggtgatagtc atcgccggac tgattacgtt
     3121 atggagaatt cttaacgcac ccgtgccgac ttatcagaca ctgattgtgc gccccggtga
     3181 tttacagcaa agcgtgctgg cgaccggaaa gctggacgcg ctgcgtaagg ttgatgtggg
     3241 cgcgcaggtc agcggtcagt tgaaaactct gtcggtggcg attggcgata aagtaaaaaa
     3301 agaccagctt ttaggggtta ttgatcctga acaggctgaa aaccagatta aggaggtcga
     3361 agcaacgctg atggagctac gtgcgcagcg gcagcaggcg gaagcggagc tgaaactggc
     3421 gcgggtgacg tattcccgtc agcaacgtct ggcacaaacg caggcggttt cacagcagga
     3481 tctcgacacc gccgcgacgg agatggctgt gaaacaggcg caaattggca ccattgacgc
     3541 gcaaatcaag cgcaatcagg cttctctcga tacggctaaa accaatctcg attacactcg
     3601 catcgttgcc ccgatggccg gggaagtcac gcaaatcacc actctgcaag gccagacggt
     3661 gattgccgca caacaagcac cgaacattct gacgctggca gatatgagca ccatgctggt
     3721 aaaagcgcag gtttctgaag cggatgtaat ccacctgaag ccggggcaaa aagcttggtt
     3781 tacggtgctt ggcgatccac tgacgcgcta cgaggggcaa atcaaggatg tactaccgac
     3841 gccggaaaag gttaacgacg ctattttcta ttacgcccgt tttgaagtcc ccaaccccaa
     3901 tggtttgctg cggctggata tgactgcgca agtgcatatt cagctcaccg atgtgaaaaa
     3961 tgtgctgacg atccctctgt cggcgttagg cgatccggtt ggcgataatc gttataaagt
     4021 caaattgttg cgtaatggtg aaacacgcga gcgtgaagtg acgattggcg cacgtaacga
     4081 taccgatgtt gagattgtca aagggctgga agcgggcgat gaagtggtga ttggtgaggc
     4141 caaaccagga gctgcacaat gacgcctttg ctcgaattaa aggatattcg tcgcagctat
     4201 cctgccggtg atgagcaggt tgaggtgctg aagggcatca ccctcgatat ttatgccggt
     4261 gagatggtag cgattgttgg cgcttcaggt tccggtaaat cgaccctgat gaatattctc
     4321 ggctgtctgg ataaggccac cagcggcacc tatcgcgtcg ccggtcagga tgttgccaca
     4381 ctggacgccg atgcgctggc gcaactgcgc cgcgagcatt tcggctttat tttccagcgt
     4441 taccatttac tttcgcattt aaccgccgag cagaacgttg aagtacccgc cgtctatgcc
     4501 ggtcttgagc ggaaacagcg gctgcttcgc gcccaggagt tactgcaacg actggggctg
     4561 gaagaccgta cagagtatta tccggcacag ctttcgggtg gtcagcaaca gcgcgtcagc
     4621 atcgcgcggg cattgatgaa cggcggtcag gtaattcttg ccgatgaacc aaccggcgca
     4681 ctggacagcc attctggcga agaggtgatg gcgatcctgc atcagctgcg cgatcgcggg
     4741 catacggtga ttatcgtcac ccacgatccg caggtcgctg ctcaggccga gcgggtgatc
     4801 gaaattcgcg acggcgaaat tgtgcgcaat cctcccgcca ttgaaaaagt gaatgttgct
     4861 ggcgggacgg agcctgttgt caacacggtg tctggctggc ggcagtttgt cagcggtttt
     4921 aacgaggcgc tgacgatggc atggcgggcg ctggcagcga ataaaatgcg tactttactg
     4981 accatgctgg ggattattat cggtattgcg tcggtggttt ccattgtcgt ggtgggtgac
     5041 gccgccaaac aaatggtgct ggcggatatt cgttctattg gtacgaatac tattgatgtc
     5101 tatcccggga aagattttgg cgatgacgat ccgcaatatc agcaggcgct gaagtacgac
     5161 gacttaatcg ccatccaaaa acaaccgtgg gtcgcctcag ccacacctgc cgtctcgcaa
     5221 aacctgcgcc tgcgttataa caatgttgat gttgctgcca gtgccaatgg cgtgagcggc
     5281 gattatttta atgtctatgg catgaccttc agtgaaggaa acacctttaa tcaggagcag
     5341 ctgaacggtc gtgcgcaggt cgtggttctc gacagtaata ctcgccgcca gcttttcccc
     5401 cataaagcag atgtggttgg cgaggtgatt ctggtcggca atatgcccgc cagagtcatt
     5461 ggtgtggcgg aagaaaaaca gtcgatgttt ggtagcagta aagtgctgcg tgtctggcta
     5521 ccttacagca cgatgtccgg gcgagttatg ggccagtcgt ggctgaactc cattactgtc
     5581 agggtaaaag aaggatttga cagcgccgag gcggaacagc aactcacgcg tttactttca
     5641 ctgcgccacg gaaagaagga tttctttacc tggaacatgg acggcgtctt gaaaactgtt
     5701 gaaaagacca cacgtacttt acaactgttt ctgacgctgg tggcggtgat ttcgctggtg
     5761 gtgggcggta ttggtgtaat gaatattatg ctggtgtcag tgaccgagcg gacgcgggaa
     5821 attggcattc gcatggctgt aggtgcgcga gcaagcgatg ttttgcaaca gttcctgatc
     5881 gaagccgtac tggtttgcct ggtcggtggc gcgttgggaa taacgctgtc actgttaatt
     5941 gctttcacct tgcagctttt cttacccggc tgggagattg gtttttcacc gttggcactg
     6001 ctgctggcgt ttctctgctc gacggccacc gggattttat ttggatggtt acccgcacga
     6061 aatgcggcac gactggatcc agtagatgct ctggcacgag agtaattttt gagataaaaa
     6121 tgccagccga tcgggctggc attttgcctt taggatgtac acaatgagac agaagagcta
     6181 tgcgactgcc gcttctactt cgacgggcac aataacactg gcgtgattgc cttttggccc
     6241 ctggtggaca tcaaactgaa cggattgtcc agcttttagc gttctgtaac catccatctg
     6301 aatggtggaa taatgagcga aaatatcttc gccgccgcct tcagggcaga tgaaaccaaa
     6361 ccctttggca ttgttgaacc acttaacagt acccttttcc atgcttcgac atccttcgca
     6421 aatcttatac aagtaagatg gaataaaccg gggtcagaga gggggctgtt caaaacctcg
     6481 ccaactctgg aaatacaatt tagagaatta gggcgagccg tcaagcgttt gacaggggcc
     6541 agggggcagg tatgaatcaa aaatttgaag cagttaacgc tattgacagg aatgtgacag
     6601 atgtcgctga tgccaacgat agatgatagt tatctatcat gtggagtaga ttggtcaggc
     6661 aaataagctc ttgtcagcgg cagggcgttc tgccgataac cgtaaccgaa gatgataact
     6721 gacaatgggt aaaacgaacg actggctgga ctttgatcaa ctggcggaag aaaaagttcg
     6781 cgacgcgcta aaaccgccat ctatgtataa agtgatatta gtcaatgatg attacactcc
     6841 gatggagttt gttattgacg tgttacaaaa attcttttct tatgatgtag aacgtgcaac
     6901 gcaattgatg ctcgctgttc actaccaggg gaaggccatt tgcggagtct ttaccgccga
     6961 ggttgcagaa accaaagtgg cgatggtgaa caagtacgcg agggagaatg agcatccatt
     7021 gctgtgtacg ctagaaaaag cctgaatgca ggcataaaaa ttgggggagg tgcctatgct
     7081 caatcaagaa ctggaactca gtttaaatat ggctttcgcc agagcgcgcg agcaccgtca
     7141 tgagtttatg accgtcgagc acttgttact ggcgctgctc agtaacccat ctgcccggga
     7201 ggcgctggaa gcgtgttctg tggatttggt tgcgctctgt caggaactgg aagcctttat
     7261 tgaacaaacc acacccgttc tgcctgccag tgaagaggag cgcgacacac agccgacgct
     7321 gagttttcag cgtgtactgc aacgtgcggt cttccatgtc cagtcctccg gtcgcaatga
     7381 ggtaaccggt gcaaacgttc tggtcgctat ctttagcgaa caggagtcgc aggcggcata
     7441 tctgttgcgt aaacatgaag tcagccgtct cgatgtggtg aactttatct ctcatggcac
     7501 gcgtaaagac gagccgacac agtcttctga tcctggcagc cagccaaaca gcgaagaaca
     7561 agctggtggg gaggaacgta tggagaattt cacgacgaac ctgaatcagc ttgcgcgcgt
     7621 gggcggaatc gacccactga ttggtcgtga gaaggagctg gagcgtgcta ttcaggttct
     7681 ctgccgtcgc cgtaaaaaca acccgctgct ggtgggggaa tctggtgtcg gtaaaaccgc
     7741 gattgcggaa ggtcttgcct ggcgaattgt tcagggcgat gtgccggaag tgatggctga
     7801 ctgtacgatt tactctctcg atatcggttc tctgttagcg ggcactaaat atcgcggcga
     7861 ctttgaaaaa cgttttaaag cgttgctcaa gcagctggag caggacacta acagcatcct
     7921 gtttattgat gagatccaca ccattatcgg tgcgggtgca gcgtctggtg gccaggtcga
     7981 tgcggctaac ctgatcaaac cgttgctctc cagcggtaaa attcgcgtaa ttggttcgac
     8041 aacctatcag gagttcagca acattttcga gaaagaccgt gctctggcgc gtcgcttcca
     8101 gaaaattgat attactgaac cgtcgatcga agaaactgtt caaatcatca atggcctgaa
     8161 accgaagtat gaagcgcacc acgacgtgcg ttatactgca aaagcggtgc gtgcagcggt
     8221 agagctggcg gtgaaataca ttaacgatcg tcatctgccg gataaagcca ttgacgttat
     8281 cgacgaagcg ggcgctcgcg cacgcctgat gccggtaagc aaacgcaaga aaaccgttaa
     8341 tgtggcggat attgagtccg tggtggcccg tattgcgcgc attccagaga agagtgtttc
     8401 tcagagtgac cgcgataccc tgaaaaacct cggcgatcgc ctgaaaatgc tggtcttcgg
     8461 tcaggataaa gccattgagg cgctgactga agccattaag atggcgcgtg caggtttagg
     8521 tcacgaacat aaaccggttg gttcgttcct gtttgccggc cctaccgggg tcgggaaaac
     8581 agaggtgacg gtacagcttt cgaaagcgtt gggcattgag ctgctgcgct ttgatatgtc
     8641 cgagtatatg gaacgccata ccgtcagccg tctgattggt gcgcctccgg gatacgttgg
     8701 ttttgatcag ggaggtttgc tgactgatgc ggtcatcaag catccacatg cggtgctgtt
     8761 gctggacgaa atcgagaaag cgcatccgga cgtgttcaat attctgttgc aggtgatgga
     8821 caacggtacg ctgaccgata acaacggacg caaagcggac ttccgtaacg tggtgctggt
     8881 gatgaccacc aacgccgggg tacgtgaaac tgagcgtaaa tccattggtc ttatccacca
     8941 ggataacagc accgatgcga tggaagagat caagaagatc tttacaccgg aattccgtaa
     9001 ccgtctcgac aacattatct ggttcgatca tctgtcaact gacgtgatcc atcaggtggt
     9061 ggataaattc atcgtcgagt tgcaggttca gctggatcag aaaggtgttt ctctggaagt
     9121 gagccaggaa gcgcgtaact ggctggccga gaaaggttac gaccgggcaa tgggcgcacg
     9181 tccgatggcg cgtgtcatcc aggacaacct gaaaaaaccg ctcgccaacg aactgctgtt
     9241 tggttcgctg gtggacggcg gtcaggtcac cgtcgagctg gataaagaga aaaatgagct
     9301 gacttacgga ttccagagtg cacaaaagca caaggcggaa gcagcgcatt aatctgattg
     9361 ttaggtaggt tggtcaagtc cgtaatctcg aaagaggtta cggacttttt gtttatgggg
     9421 tggaggaggt tcagaccctt tttttaatga tgatggtaag ttgttgataa ttagtgctgc
     9481 gggaaggtaa ggataaaaaa gggtgctgca ggagaatggg atggttttgc tttattaaca
     9541 acgggctaaa cgtgtagtat ttgagttcac tgccgtacag gcagcttaga aattcacagg
     9601 taacatactc cacccgccca ccatgttcac tgccgtacag acagataaaa tgcgaaaaaa
     9661 aagctcgcac tttcgtacga gctcttcttt aaatatggcg gtgagggggg gattcgaacc
     9721 cccgatacgt tgccgtatac acactttcca ggcgtgctcc ttcagccact cggacacctc
     9781 accaaattgt tttgctacca aacctcatgg gtggcaacgg ggcgctacta tagggagttg
     9841 gagtaaaacg gtcaagaaga attttaatga taattattgt ttgctcatac tgtaaacaag
     9901 ttgtgcagta tatctacatc gagacaagtt acggacttat acttccaaag tacttcatac
     9961 atatcacaaa ataaaaaggc cggttaaacc gaccttttac tcgttctttc tcttcgccca
    10021 tcaggcggta aaacaatcag cgactacgga agacaatgcg gcctttgctc aggtcgtacg
    10081 gggtcagttc aacagtcact ttgtcgcccg tcaggatgcg gatgtagttt ttgcgcattt
    10141 taccggagat gtgtgcagta accacgtgac cgttttctaa ctctacgcgg aacatggtat
    10201 taggcaacgt ttcaagaacg gtaccttgca tttcaatatt gtcttctttg gccatctaat
    10261 cctctggggt atcactaccg taatttgaac cggcaagata atgccgaagt tctgtaaata
    10321 agtaaagatt tgcgcgctaa atcgcaacaa acaggttcgg cacattactc cgaaaacaca
    10381 cggttaagcc gcaccaaaag cgcaacgtat aagggagcgg tgagataaac gatgggcgtt
    10441 acctgacgcg aaaaattcct tatcggcagc ggggtaatga gcgtaaccaa ctctgcgacc
    10501 gcaattataa cactctgggg agaaatgtgc cgaaaacatt cattcttgtg gtgaaaacaa
    10561 gcatcgtggt acccagaaat tattcggcaa tcgtccgagg cgcatttgat tgagataatt
    10621 aaggtaatcc cggcggggaa tttcgcaggc accaagcgat gctgtgtgat cgttaaggac
    10681 ctggcagtcg ataagcttac cgccatgacc gataaattcc tcacagaata ccagaagcgc
    10741 cgttttagac gcattttcca tccggctgaa catggactcg ccacaaaata gcgttccctg
    10801 ggccacgccg tacataccgc cgacaagctc atcttcacgc cagacttcaa tggagtgggc
    10861 atggccgagt tcgtgaaggc gatggtaggc ttcgaccacg ccacgcgtga tccaggttcc
    10921 ttcttcgcga tcgctggcac agccttcaat gacctgacca aaagcgtaat tcatcgtgac
    10981 acgatagggc gagcgtttat gaaatcgctt catactacgg ctgatatgca gtgattctgg
    11041 ccatagcacc gcgcggggat cgggcgacca ccagaggatg gggtcgcctg gagaaaacca
    11101 cggaaaaata ccacgctggt aagccattaa caggcgcgca gggctaagat cgcccccaag
    11161 tgccagcagg ccgttaggct cacgtaatgc gccttccggg gaagggaagg ctattgaatg
    11221 gcgagaaagc tgaaccaggc gcatgaccgc aaaactccac gcaagtcgga tcgttcaata
    11281 atagcttaca aaccctgctt gaactggtaa taacgcccct gtctggcaag cagctctgcg
    11341 tgagtacctt gctcaataat ttgcccgttg tccatcacta ttatttgttg gaaacgagag
    11401 agtccgcgaa gtcgatgggt gaccattaac accgttttct cacgcatcat ttctgcaagc
    11461 aattcaagga tctggctttc ggttgtggca tctaagcctt cggtaggttc atccagcaac
    11521 accagtggcg catcatgtaa cagcgcacgg gcgatagcca gacggcgcag ttcaccaccg
    11581 gagagctggc gtccgccttc acctaaccaa ctgttgagac ctgcatcctc gagcagcttc
    11641 tccagaccaa cgcgacgcaa gctctccgcc agagcctcat cactactgcc aggcgaggcg
    11701 agtaacagat tatcacgcag cgtggcgcta aacagatgca ctcgctgagg aacaacgctg
    11761 atggtctgtc gtagagccgc ttcattcagg ctggctatgg ggctatcgtt aagcaaaatc
    11821 tcgccctgtt gcgggtccca agcgcgggtc agcagttgta acagtgttga tttgccgcat
    11881 ccggttcgcc cgagaatcgc aatatgttcc ccggcgttta cctgaagaga aatcccttta
    11941 agtgcctgtt gggattgctc cggataagtg aactgaacat cccgtaatgt cagcgaaacg
    12001 cgatcggcaa cacgagttag ggtatcaggg aaggtgactt ccggtttttg atccgttaaa
    12061 tcagtgatcc gaacggcaga ggcaatgact tgccccagat gctgaaatgc acccgttact
    12121 ggtgccagtg cttcaaacgc ggctaacgcg cagaagacaa acagggcaat taacgcgccg
    12181 ggttgagcat tgccgccaac gccgccagac gccatccaca gcatcaggat caccgctaac
    12241 gcgccaatga gcagcattat cacttgcgac aatgcggtca gttcagattg acggcgttgc
    12301 gcttccagcc attgaatttc tgtattctct agttgcgtgc gataacgatc gctggcacca
    12361 aaaatggtca gctcagcttg cccttgcagc caggccgtca gttgttggcg atactgtccg
    12421 cgaagatgag tcagattttg cccggtgctt tttcccgcac gataaaacag cggtggcatc
    12481 aggaaaagcg tcagtaacat aatgccgccc agcgtaaagg cgagggtgaa atcaaggaaa
    12541 cttaacccga ttgtcaccat cataatcacc acaaaagcgc ccaccagcgg cgagataacg
    12601 cgcaggtaaa gatgatcgag cgtatcaaca tccgccacca cgcgattgag caattcgccc
    12661 tgacgatagc gcgccagtcc ggcaggggag aggggcaaca atttgctgaa ggtgtaaatg
    12721 cgcagatgct gcaacacgcg gaaagtcgcg tcgtgactta ccagacgttc aaaataacgc
    12781 ccggcagtac gggtgattgc ggcaccacgc acgcccgcag cgggtagcat atagttgaag
    12841 ctgtacagtc cggcaacccc cgcaaccgct gaggccgaga ggaaccagcc ggaaagtgtc
    12901 aacagtccga tactggcgag cagcgtcaca attgccagca caataccaag acttaacatc
    12961 catttatgac gtttatacag tgctagatag ggtagcaaag cgcgcattta aatctcctcc
    13021 tgacgatggg ccagtaatgt ggcgaatggg ccaccagcca cacttaattc cgcgtaacgt
    13081 ccttgctcaa taatccggcc atcctgcata acccaaatga catcccagtc agcaagatct
    13141 tctaactggt gggtgaccat taacgttgtc tggcgcagag aggcggcatt cagcgcctcc
    13201 attacgcgct gttcactgtg agcatcaagg ctggcagcgg gttcatccaa cagtaatagc
    13261 gaacagggat ttagtaacac acgggccacc gccacgcgct gcgcctgccc cacggaaagg
    13321 cgggcagcct ggtcgccaac aggcgtatca acgccttgtg gcaggagcgg tagaaactcg
    13381 ctgacccagg cgttatccag cgctgcttgt aattcatgtt cgctggcatc aggtcgcgcc
    13441 agtagtacgt tatcccgtaa tgttgctgcc ggtaattgtg gattttgccc aacccaggag
    13501 agatgtttac gccatgattc tggtgataaa tcgcgtaatt ctatcccgtt gattcgtagc
    13561 gatccctgat atgagagaaa accagaaagc gcgttcaaca gtgaactttt acctgaaccg
    13621 ctgcgaccaa ccaacacggc acgttggcct gatggcaaag taaagttcag cggtccggcc
    13681 agcgttttac cttccggcga cgtgataaac agatcctcgg cctcaatggt caccggatcg
    13741 gtcgatgcta attccacctc gccacgctgc ggatgggcga gcggggtttc cataaatgtt
    13801 ttcagactgt cagctgcacc aacagcctgg gctttagcat gataaaacgt accgagatcg
    13861 cgtaatggct ggaaaaactc tggcgcaagg atcagggcca gaaaacccgc agccagcgtc
    13921 acgccagtat cgtagtgacc aaaatccagc tcgccgagat aggaaaaacc aaagtagacc
    13981 gccaccagag caattgacag cgaggtaaaa aattcgagaa tgccggagga taaaaatgcc
    14041 agccgtagca cttccattgt ccgttggcgg aaatcttccg aagcagaacg aatactttca
    14101 atttcagctt caccacgacc aaaaatacgc aatgtttcca tgccgcgcag gcgatcgagg
    14161 aaatgcccac ttaagcgagc aagagcgaga aagttacgtc ggttagcatc ggcagccccc
    14221 attccaacca gcgccataaa caacggaatt aacggtgcag tgcccagcag aatgagcgcc
    14281 gcagcccagt ttgaggggaa gattgccacc acaatcagca acggcaccga cactgccagc
    14341 gccatttgcg gcaggtagcg tgcatagtaa tcatgcatat cgtcaatttg ctcgagtacc
    14401 agcgtcgccc agctccccgc aggtttaccc tgaatccacg ctggccctgc ttgttgcaga
    14461 cggtcgagaa cctgccggcg gatggcaaag cggatatgct gcccggcgtg ataacccacc
    14521 cgttcgcgta accagaccac ccatgcgcgc agtacaaagg tcagaaccag taacgtaaag
    14581 ggaagcagca gggcttcacg gggaatattc tccataatca tatgttgcag aattcgcgcc
    14641 atgaaccagg cctgggcaat gatcaatatg ccactcacaa agcccagcag acgagaaata
    14701 ttcagccaac gttgggagat gacgctttgc tgttttaacc agcgggttaa ctctttttga
    14761 cgagatttat tcattgcacg cttagcaggt gagttatcag aattatttgc agagcaatgt
    14821 tacaacgggg aaaaaataaa ggcgacccat agtcgcaagg tgtcgccttc tttacttttg
    14881 ttactgattt gtaaaattat tttgcgtcag ctaaaccatc gaggtagcgt tccgcatcaa
    14941 gtgctgccat gcagcctgta ccggccgaag taatggcctg acgataaata tgatccatca
    15001 cgtcacccgc ggcaaagacg ccaggaatgc tggtctgggt ggcattacca tgaatacccg
    15061 actgtacttt gatgtagccg ttttccagtt ccagctgccc ttcgaaaatg gcagtattcg
    15121 ggctgtgacc gatagcaaca aacagaccgg caacgtcgag tgattcgatg ttatcgctgt
    15181 tttgcgtatc gcgcagacga acgccagtga cacccatttg atcgccggtc acttcttcca
    15241 gcatccggtt ggtgtgcaga atgatgttgc cgttctccac tttatccatc agacgcttaa
    15301 tgaggatttt ttccgcgcgg aaaccgtcac ggcggtgaat cagatgtact tccgaagcga
    15361 tgttagacag atacaacgcc tcttcaaccg cggtattgcc gccgccgatg accgcaactt
    15421 tctggttgcg atagaagaaa ccgtcgcagg ttgcacaagc agaaacccca cggcctttaa
    15481 aggcttcttc agagggcagg ccgagatagc gtgcagaagc tccggtggca ataatcagcg
    15541 cgtcgcaagt gtattcgccg ttatcgccat tcagacggaa cggacggttt tgcagatcca
    15601 ccttgttgat atgatcaaaa atgatttcag tttcaaattt ggtggcatgt tcgtgcatgc
    15661 gctccattaa taacggaccg gtcagatcgt ttggatcgcc aggccagttt tccacttctg
    15721 tggtggtggt cagttggccg cctttttcca tgccggtaat cagcacaggt tgcaggttgg
    15781 cgcgcgccgc atagacagca gcggtgtatc ccgccgggcc tgaacccagg ataagcagtt
    15841 tactgtgttt ggtcgtgccc atgagatccc catagttgtt ggcagacaat gggcaggatt
    15901 gtagggaatt tactgacgta aaaaaagagt atgacgattt tgttaacaat ttgtgcaatc
    15961 ggcagcatcg ataagcaggt caaattctcc cgtcattatc acctctgcta cttaaatttc
    16021 ccgctttata agctgattaa atgatgaata aacgcccctg ttaatgaata tctggcatgt
    16081 tgtactaaaa atcgatgttt tgctttgaca atcccctggt gttttgcgaa aacattcgag
    16141 gaagaaaaaa aacagtattc ttatatgcgc ataaccatgc atgtaaatac catgtttacc
    16201 gtgctagtga aatctacgta tggcgtggac agacgccatt cgtgatgtcg atagctgcca
    16261 caaggcaacg gtcttctcac cgtagaccca ggcattgcgc gccgtgaatc ttcatgattt
    16321 cggtctatcg tgacgggtag cgactctgaa cagtgatgtt tcagggtcag acaggagtag
    16381 ggaaggaata cagagagaca ataataatgg tagatagcaa gaagcgccct ggcaaagatc
    16441 tcgaccgtat cgatcgtaac attcttaatg agttgcaaaa ggatgggcgt atttctaacg
    16501 tcgagctttc taaacgtgtg ggactttccc caacgccgtg ccttgagcgt gtgcgtcggc
    16561 tggaaagaca agggtttatt cagggctata cggcgctgct taacccccat tatctggatg
    16621 catcacttct ggtattcgtt gagattactc tgaatcgtgg cgcaccggat gtgtttgaac
    16681 aattcaatac cgctgtacaa aaacttgaag aaattcagga gtgtcattta gtatctggtg
    16741 atttcgacta cctgttgaaa acacgcgtgc cggatatgtc agcttaccgt aagttgctgg
    16801 gggaaaccct gctgcgtctg cctggcgtca atgacacacg gacatacgtt gttatggaag
    16861 aagtcaagca gagtaatcgt ctggttatta agacgcgcta acacggaaca ggtgcaaaat
    16921 cggcgtattt tgattacact cctgttaatc catacagcaa cagtactggg gtaacctggt
    16981 actgttgtcc gttttagcat cgggcaggaa aagcctgtaa cctggagagc ctttcttgag
    17041 ccaggaatac actgaagaca aagaagtcac attgacaaag ttaagtagcg gccgtcgcct
    17101 tctggaagcg ttgctgatcc ttattgtcct gtttgccgtc tggttgatgg ctgccttact
    17161 aagctttaac ccttcggacc ccagctggtc gcaaacggcc tggcatgaac ctatccataa
    17221 tttaggtggg atgcccggtg cgtggctggc agatacgctg ttctttattt ttggcgtgat
    17281 ggcttacacc attcccgtca ttattgtcgg cggttgttgg tttgcctggt gtcatcagtc
    17341 cagtgacgaa tacattgatt attttgccgt ttcgttacgc atcattggcg ttttggcgct
    17401 catccttacc tcctgtggtc tggcggcaat caacgctgac gatatctggt attttgcctc
    17461 cggtggcgtc attggcagct tactaagcac tacgttacaa ccactgctac acagtagcgg
    17521 gggaactatt gcgctgctct gcgtttgggc tgcgggcctg acgctgttca ccggttggtc
    17581 atgggtgacc attgctgaaa aactcggcgg ctggatttta aacattctca ccttcgccag
    17641 taatcgtacc cgtcgcgatg atacctgggt cgatgaagat gaatatgaag atgacgaaga
    17701 gtatgaagat gaaaaccacg gcaaacagca tgaatcacgc cgtgcccgta ttcttcgcgg
    17761 cgcgctagcg cgtcgtaaac ggttggcgga aaaattcatt aatccgatgg ggcggcaaac
    17821 agacgctgcg ttgttctccg gtaagcggat ggatgatgaa gaagagatta tctacactgc
    17881 acgcggtgtg gctgccgacc cggacgacgt cctattttcg ggcaatcgtg caacgcagcc
    17941 agaatatgac gaatacgatc cattattaaa cggtgcgcca attaccgaac ctgttgctgt
    18001 agcagctgct gctaccacgg cgacacaaag ctgggctgcg ccggttgaac ctgtgaccca
    18061 gacgccgcct gttacttctg ttgatgttcc accttcgcaa cctacagtag cctggcagcc
    18121 tgtaccgggt ccacaaacgg gagagccggt tattgctcct gcaccggaag gttacccaca
    18181 gcagccacaa tatgcgcagc ctgcagtgca atataatgag ccgctgcaac aaccttacta
    18241 cgctcctgcg gcggaacaac ctgttcagca accgtattac gcaactgcgc cggaacagcc
    18301 tgcgcaacag ccgtattatg cccctgcgcc agaacaaccg gtggcaggta acgcctggca
    18361 agccgaagag cagcaatcca cttttgctcc acagtctaca taccagactg agcaaactta
    18421 tcagcagcca gccgctcagg agccgttgta ccaacagccg caacccgttg aacagcagcc
    18481 tgttgtggag cctgaacccg ttgtagaaga gacaaaaccc gcgcgtccgc cgctttacta
    18541 ttttgaagaa gtggaagaga agcgagcccg tgaacgtgaa caacttgcgg cctggtatca
    18601 accgattcca gaaccggtta aagaaccaga accgatcaaa tcttcgttga aagcgccttc
    18661 tgttgcagca gtacctccag tagaagccgc tgccgctgtt tctccgctgg catctggcgt
    18721 gaaaaaagcg acactggcga cgggggctgc cgcaaccgtt gccgcgccag tcttcagtct
    18781 ggcaaatagc ggtggaccgc gtccgcaagt caaagaggga attggcccgc agttgccacg
    18841 accgaaacgt atccgcgtgc caactcgtcg tgaactggcg tcttacggta ttaagctgcc
    18901 ctcacagcgt gcggcggaag agaaagcccg tgaagcccgg cgcaatcagt atgattctgg
    18961 cgatcagtat aacgatgatg aaatcgatgc gatgcagcag gatgaactgg cacgtcagtt
    19021 cgcccagaca cagcagcaac gctatggcga acagtatcaa catgatgtgc ccgtaaacgc
    19081 agaagatgca gatgctgcgg cagaggctga actggctcgt cagtttgcgc aaactcaaca
    19141 acaacgttat tccggcgaac aaccggctgg ggcgaatccg ttctcgctgg atgattttga
    19201 attttcgcca atgaaagcgt tgctggatga tggtccacac gaaccgttgt ttacgccaat
    19261 tgttgaacct gtacagcagc cgcaacaact ggttgcaccg cagcagcagt atcagcagcc
    19321 acaacagccg gttgcgccac agcagcaata tcagcagccg caacagccgg ttgcgccgca
    19381 gcagcagtat cagcagccac aacagcaggt tgcgccgcag ccacaatatc agcagccgca
    19441 acaaccggtt gcaccgcagc agcaggatac cctgcttcat ccgctgttga tgcgtaatgg
    19501 cgacagccgt ccgttgcata aaccgacgac gccgctgcct tctctggatt tgctgacacc
    19561 gccgccgagc gaagtggagc cggtagatac ctttgcgctt gaacaaatgg ctcgcctggt
    19621 ggaagcgcgt ctggctgatt tccgtattaa agccgatgtc gtcaattact ctccggggcc
    19681 ggttatcact cgctttgaac ttaacctggc tcctggcgta aaagcggcgc gcatttctaa
    19741 cttgtcacgg gaccttgccc gttcactttc gacggtggcg gtgcgtgtcg ttgaagttat
    19801 tcctggcaaa ccctatgtag gtctggagtt accaaataaa aaacgacaaa ccgtttatct
    19861 gcgcgaagtt ttggataacg ctaaattccg cgataatccg tcgccattaa ccgtggtgct
    19921 gggtaaagat atcgccggtg agccggtggt tgccgatctg gcgaaaatgc cgcacttgtt
    19981 ggttgcgggg actaccggtt ccggtaaatc tgtcggtgtg aacgcgatga tcctgagcat
    20041 gctttataaa gcacagccag aagatgtgcg tttcatcatg atcgacccga aaatgctgga
    20101 gctttcggtt tatgaaggca ttccgcatct gttaacggaa gtcgttactg atatgaaaga
    20161 tgccgccaac gcgctgcgct ggtgtgttaa cgagatggag cgtcgttata aactgatgtc
    20221 tgcgctgggt gtgcgtaatc tggcgggtta taacgaaaaa attgctgaag ccgatcgcat
    20281 gatgcgtccg attccagacc cgtactggaa gccgggtgac agtatggatg cccagcatcc
    20341 ggtgctgaaa aaagaaccat acattgtggt gttggttgac gaatttgccg acctgatgat
    20401 gacggtaggt aaaaaagtgg aagagctgat agcacgtctg gcgcaaaaag cccgtgccgc
    20461 gggtatccac ctcgtactgg caactcagcg tccatcggtt gatgttatta ctggtctgat
    20521 taaagcgaat attccgaccc gtatcgcctt taccgtatcc agtaagattg actcacgtac
    20581 cattcttgat caggctggcg cggaatcact gctggggatg ggggatatgc tctactctgg
    20641 gccgaactcc acgttgccgg tacgtgtcca tggtgctttt gttcgcgatc aggaagttca
    20701 tgccgtggtg caggactgga aagcgcgtgg tcgcccacag tatgttgatg gcatcacttc
    20761 cgacagtgaa agcgaaggtg gcgcgggcgg tttcgatggc gctgaagaac tggatccgtt
    20821 gttcgatcag gcggtgcagt ttgtcactga aaaacgcaaa gcgtcaattt ctggcgtaca
    20881 gcgtcagttc cgcattggtt ataaccgtgc agcgcgtatt atcgaacaga tggaagcgca
    20941 ggggattgtc agcgaacagg ggcacaacgg taatcgtgaa gtgctggccc caccgccgtt
    21001 tgactaatta atgcattgcc ggataaggcg cggtagcgtc gcatccggca ctctatcaac
    21061 tgaaaattca gtattttctt ttttcctcaa gctgattatt agcctggaat agagagtaga
    21121 gggaactccc gatcgggagt gacgtaattt gaggaataat gatgaaaaaa attgccatca
    21181 cctgtgcatt actctcaagc ttagtagcaa gcagcgtttg ggctgatgcc gcaagcgatc
    21241 tgaaaagccg cctggataaa gtcagcagct tccacgccag cttcacacaa aaagtgactg
    21301 acggtagcgg cgcggcggtg caggaaggtc agggcgatct gtgggtgaaa cgtccaaact
    21361 tattcaactg gcatatgaca caacctgatg aaagcattct ggtttctgac ggtaaaacac
    21421 tgtggttcta taacccgttc gttgagcaag ctacggcaac ttggctgaaa gatgccaccg
    21481 gtaatacgcc gtttatgctg attgcccgca accagtccag cgactggcag cagtacaata
    21541 tcaaacagaa tggcgatgac tttgtcctga cgccgaaagc cagcaatggc aatctgaagc
    21601 agttcaccat taacgtggga cgtgatggca caatccatca gtttagcgcg gtggagcagg
    21661 acgatcagcg cagcagttat caactgaaat cccagcaaaa tggggctgtg gatgcagcga
    21721 aatttacctt caccccgccg caaggcgtca cggtagatga tcaacgtaag tagaggcacc
    21781 tgagtgagca atctgtcgct cgatttttcg gataatactt ttcaacctct ggccgcgcgt
    21841 atgcggccag aaaatttagc acagtatatc ggccagcaac atttgctggc tgcggggaag
    21901 ccgttgccgc gcgctatcga agccgggcat ctgcattcta tgatcctctg ggggccaccg
    21961 ggtaccggca aaacaactct cgctgaagtg attgcccgct atgcgaacgc tgatgtggaa
    22021 cgtatttctg ccgtcacctc tggcgtgaaa gagattcgcg aggcgatcga gcgcgcccgg
    22081 caaaaccgca atgcaggtcg ccgcactatt ctttttgttg acgaagttca ccgtttcaac
    22141 aaaagccagc aggatgcatt tctgccacat attgaagacg gcaccatcac ttttattggc
    22201 gcaaccactg aaaacccgtc gtttgagctt aattcggcac tgctttcccg tgcccgtgtc
    22261 tatctgttga aatccctgag tacagaggat attgagcaag tactaactca ggcgatggaa
    22321 gacaaaaccc gtggctatgg tggtcaggat attgttctgc cagatgaaac acgacgcgcc
    22381 attgctgaac tggtgaatgg cgacgcgcgc cgggcgttaa atacgctgga aatgatggcg
    22441 gatatggccg aagtcgatga tagcggtaag cgggtcctga agcctgaatt actgaccgaa
    22501 atcgcaggtg aacgtagtgc ccgctttgat aacaaaggtg atcgctttta cgatctcatt
    22561 tccgcactgc ataaatcggt acgtggtagc gcacccgatg cggcgctgta ctggtatgcg
    22621 cgaattatta ctgccggtgg cgatccgtta tatgttgcgc gtcgctgtct ggcgattgcg
    22681 tctgaagatg tgggtaatgc tgatccacga gcgatgcagg tggcaattgc agcctgggat
    22741 tgctttactc gcgttggccc ggcggaaggt gaacgcgcca ttgctcaggc gattgtttac
    22801 ctggcctgcg cgccaaaaag caacgctgtc tacactgcgt ttaaagctgc gctggcggat
    22861 gttcgcgaac gtccggatta tgacgtgccg gttcatttgc gtaatgcgcc gacgaaatta
    22921 atgaaggaaa tgggctacgg gcaggaatat cgttacgctc atgatgaagc aaacgcttat
    22981 gctgccggtg aggtttactt cccgcgggaa atagcacaaa cacgctatta tttcccgaca
    23041 aacaggggcc ttgaaggcaa gattggcgaa aagctcgcct ggctggctga acaggatcaa
    23101 aatagcccca taaaacgcta ccgttaatgt tatcgttgcg gtaatgttgt tactgtatcc
    23161 ctgtggtcgc aggctgtggc cacatctccc atttaattcg ataagcacag gataagcatg
    23221 ctcgatccca atctgctgcg taatgagcca gacgcagtcg ctgaaaaact ggcacgccgg
    23281 ggctttaagc tggatgtaga taagctgggc gctctcgaag agcgtcgtaa agtattgcag
    23341 gtcaaaacgg aaaacctgca agcggagcgt aactcccgat cgaaatccat tggccaggcg
    23401 aaagcgcgcg gggaagatat cgagccttta cgtctggaag tgaacaaact gggcgaagag
    23461 ctggatgcag caaaagccga gctggatgct ttacaggctg aaattcgcga tatcgcgctg
    23521 accatcccta acctgcctgc agatgaagtg ccggtaggta aagacgaaaa tgacaacgtt
    23581 gaagtcagcc gctggggtac cccgcgtgag tttgactttg aagttcgtga ccacgtgacg
    23641 ctgggtgaaa tgcactctgg cctcgacttt gcagctgcag ttaagctgac tggttcccgc
    23701 tttgtggtaa tgaaagggca gattgctcgc atgcaccgcg cactgtcgca gtttatgctg
    23761 gatctgcata ccgaacagca tggctacagt gagaactatg ttccgtacct ggttaaccag
    23821 gacacgctgt acggtacggg tcagctgccg aaatttgctg gcgatctgtt ccatactcgt
    23881 ccgctggaag aagaagcaga caccagtaac tatgcgctga tcccaacggc agaagttccg
    23941 ctgactaacc tggtgcgcgg tgaaatcatc gatgaagatg atctgccaat taagatgacc
    24001 gcccacaccc catgcttccg ttctgaagcc ggttcatatg gtcgtgacac ccgtggtctg
    24061 atccgtatgc accagttcga caaagttgaa atggtgcaga tcgtgcgccc ggaagactca
    24121 atggcggcgc tggaagagat gactggtcat gcagaaaaag tcctgcagct gctgggcctg
    24181 ccgtaccgta aaatcatcct ttgtaccggc gacatgggct ttggcgcttg caaaacctat
    24241 gacctggaag tatggatccc ggcacagaac acctaccgtg agatctcttc ctgctccaac
    24301 gtttgggatt tccaggcacg tcgtatgcag gcacgttgcc gcagcaagtc ggacaagaaa
    24361 acccgtctgg ttcataccct gaacggttct ggtctggctg ttggtcgtac gctggttgca
    24421 gtaatggaaa actatcagca ggctgatggt cgtattgaag taccagaagt tctgcgtccg
    24481 tatatgaacg gactggaata tattggctaa tacccaattt ttctgaatct aaaaagcgcc
    24541 tgcgggcgct ttttttgtct ccctttgata ccgaacaata attactcctc acttacacgt
    24601 aatactactt tcgagtgaaa atctacctat ctctttgatt ttcaaattat tctatgtata
    24661 caagcctata tagcgagctg ctatagaaat aattacacaa tacggtttgt tactggaatc
    24721 aatcgtgagc aagcttgagt gagccattat gaaaacgaaa atccctgatg cggtattggc
    24781 tgctgaggtg agtcgccgtg gtttggtaaa aacgacagcg atcggcggcc tggcaatggc
    24841 cagcagcgca ttaacattac cttttagtcg gattgcgcac gctgtcgata gcgccattcc
    24901 aacaaaatca gacgaaaagg ttatctggag cgcctgtaca gttaactgtg gtagtcgctg
    24961 cccgctacgt atgcacgtcg tggacggtga aatcaaatat gtcgaaacgg acaataccgg
    25021 cgatgacaat tacgacggcc tgcactaggt tcgcgcctgc ctgcgtgggc gttccatgcg
    25081 tcgccgtgtc tacaatccgg accgcctgaa atatccgatg aaacgagtcg gggcgcgcgg
    25141 tgaaggcaaa ttcgagcgca ttagctggga agaagcctac gacatcatcg cgaccaatat
    25201 gcagcgcctg atcaaagagt acggcaacga gtctatctat ctgaactatg gcaccggtac
    25261 gctgggcggc accatgaccc gctcctggcc gccgggaaat accctggtcg cgcggctgat
    25321 gaactgctgc ggcggctatc tgaaccatta cggcgactac tcctccgcgc aaattgcgga
    25381 aggtttgaac tatacctacg gcggctgggc agatggcaac agtccgtcgg atatcgaaaa
    25441 cagtaagctg gtagtgctgt ttggtaataa ccctggcgaa acgcgaatga gtggcagtgg
    25501 ggtgacttac tatcttgaac aggcacgcca gaaatctaat gcccgcatga tcatcatcga
    25561 tccgcgctat accgacaccg gtgccgggcg cgaagatgag tggatcccta ttcgtccggg
    25621 aacagatgcc gcactggtta acggtctggc gtacgtcatg atcactgaaa acctggtgga
    25681 tcaggcattc ctcgataaat attgcgttgg ctacgatgag aaaaccctgc cagccagtgc
    25741 gccgaaaaat ggccactata aagcttatat tctgggtgaa gggccagatg gcgtggctaa
    25801 aacaccggaa tgggcctcac aaatcaccgg tgttccggca gacaaaatca tcaaactggc
    25861 tcgtgaaatc ggcagtacca aaccggcgtt tatcagccag ggatggggcc cgcagcgtca
    25921 cgctaacggt gaaatcgcaa cccgtgctat ctcgatgctg gcgattctga ccggtaacgt
    25981 tggtattaac ggaggcaaca gcggcgcgcg tgaaggttca tacagcttac cgtttgtccg
    26041 tatgccgacc ttggaaaacc cgatccagac cagcatttcg atgtttatgt ggaccgatgc
    26101 cattgaacgt ggcccggaaa tgacggcgct gcgtgatggt gtacgcggga aagataagct
    26161 ggatgtgccg atcaaaatga tctggaacta tgccggtaac tgcctgatta accagcattc
    26221 tgaaatcaac cgtacccatg aaatccttca ggatgataag aagtgcgagc tgattgtggt
    26281 tatcgactgc cacatgacct catcggcgaa atatgctgac atcctgctgc ctgactgcac
    26341 cgcttccgaa cagatggact ttgcgctgga tgcatcctgc gggaatatgt cttacgtgat
    26401 tttcaacgat caggtgatta aaccgcgctt tgaatgtaag accatctatg aaatgaccag
    26461 cgaactggca aaacgtcttg gcgttgagca acagtttact gaaggccgta cacaggaaga
    26521 gtggatgcgg catctgtatg cccagtcgcg ggaagcgatt cctgaactgc caacgtttga
    26581 agagttccgc aagcagggga tctttaaaaa gcgcgaccca caagggcacc acgttgctta
    26641 taaagctttc cgtgaagatc ctcaggcaaa tccactgacc acgccatcgg gcaaaattga
    26701 gatttattcg caggcgctgg ctgacattgc cgctacctgg gaattgccag aaggcgatgt
    26761 gatcgatcca ctgccgatct acacgccggg ctttgaaagt tatcaggatc cgttgaacaa
    26821 acagtatccg ctgcagctta cgggtttcca ctataaatct cgcgttcact caacttacgg
    26881 cgacgttgat gtgctgaaag cagcttgccg tcaggaaatg tggatcaacc cgcttgatgc
    26941 gcaaaaacgc ggtatcaaca acggcgataa agtcaggatc tttaacgatc gtggtgaggt
    27001 tcatattgag gcgaaagtga cgccacgaat gatgccgggt gtggtcgcac tgggtgaagg
    27061 tgcctggtat gacccggata caaaacgtgt cgataagggc ggttgtatca acgtactgac
    27121 cactcaacgt ccgtctcctc tcgctaaggg gaatccgtca catacaaacc ttgttcaggt
    27181 tgaaaaggtg taaggagtaa ccgatgacaa cccagtatgg attttttatt gattccagcc
    27241 gttgcaccgg ttgcaaaacc tgcgagctgg cctgtaaaga ctacaaagat ttgacgccag
    27301 aagtcagctt ccgccgcatt tatgaatatg ctggcggcga ctggcaggaa gataacggtg
    27361 tctggcacca gaacgtgttt gcctactatc tgtcgatttc atgtaaccac tgcgaagatc
    27421 cggcttgtac taaagtctgc ccgagcggtg cgatgcataa acgtgaagat ggttttgttg
    27481 tggtcgatga agatgtgtgc attggctgcc gctactgcca tatggcttgc ccgtatggcg
    27541 caccgcaata taacgaaacg aaaggccata tgaccaaatg cgatggttgt tatgaccgtg
    27601 ttgcggaggg taaaaagccg atctgtgttg aatcttgtcc gctgcgggcg ctggatttcg
    27661 gccctatcga cgagctgcgt aaaaaacatg gcgatctggc ggccgttgcg ccgttgccgc
    27721 gagctcactt taccaaaccg aatattgtga tcaaacccaa tgccaatagc cgcccgaccg
    27781 gggataccac tggctatctg gcaaacccga aggaggtgtg agatgggaag tggatggcat
    27841 gaatggccgc tgatgatctt cacggtcttc gggcaatgtg tagcaggtgg ttttatcgtt
    27901 ctggctttgg cgctgctcaa aggcgacctg cgagcagaag cccagcagcg tgttatcgcc
    27961 tgcatgtttg gtttatgggt gctgatgggc attggcttta tcgcctctat gctccatctt
    28021 ggttcaccaa tgcgcgcttt taactcgctc aaccgggtag gggcttcagc actcagtaac
    28081 gaaatcgcca gcggttcgat cttttttgcc gtaggcggca tcggctggtt gctggcaatg
    28141 ctgaaaaagc tgtcaccggc attgcgtacg ctgtggctga tagtgacgat ggttcttggc
    28201 gtcatctttg tctggatgat ggtgcgtgtg tataacagca ttgataccgt tccgacctgg
    28261 tacagcatct ggacgccgat gggcttcttc ctgacgatgt ttatgggcgg cccgttactg
    28321 ggttacctgt tgttgagtct ggctggcgtc gatggctggg cgatgcgtct gctgccagca
    28381 atttctgtac tggcactggt agtgagtggc gtggtgtcag tgatgcaggg cgcagagctg
    28441 gcgactattc atagttctgt gcagcaggcc gcagcgctgg tgccggacta tggtgcgctg
    28501 atgtcctggc ggatcgtgct tttggccgtt gccctgtgct tgtggattgc accacagcta
    28561 aaaggttatc agcctgcggt tccgctactt tctgtatcat tcattctgct tctggcaggg
    28621 gaattaatcg gtcgcggcgt attctatggt ttgcatatga ccgtggggat ggccgtcgca
    28681 agctaatcat aacaaccggg gtttcggccc cggttctctt ttatttctgc ttcgttaacg
    28741 tgtcataact ggtcatcaaa ttacgataat caggaatgtg gttagagaac aacgtcgcca
    28801 gtccttcaat atcattatgc cagtcgcgat gcagctcgca cgccacgccg aatcatgtca
    28861 tcaattgcgc accagcttgc gacatgcgat cccatgccga atgccgggta atttcattaa
    28921 aggtccctga cgcgtcagtc acgacaaaga cgtcaaaccc ttcttcaatg gctgaaagcg
    28981 ccgggaatgc cacgcaaact tcggttacca caccggcaat aattaactgt tttttacctg
    29041 tcgctttgac agcttttaca aaatcttcgt tatcccaggc gttaatattt cccgggcgag
    29101 caatgtaagg tgcatcgggg aattgtgctt tcagttctgg aactaatggg ccgttaggac
    29161 cggtttcaaa actggtggta agaatagttg gtaagttgaa atacttagcc tggtcaccca
    29221 gcgccagcac gttattttta aacttatcgg gttcgatatc ccgtacaagg gaaagtaaac
    29281 cagcctggtg atcaac
//
LOCUS       DAJVUN010000034        29221 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.034, whole genome shotgun sequence.
ACCESSION   DAJVUN010000034 DAJVUN010000000
VERSION     DAJVUN010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29221
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.034"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(447..1118)
                     /gene="queE"
                     /locus_tag="OQQ76_001219"
     CDS             complement(447..1118)
                     /gene="queE"
                     /locus_tag="OQQ76_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HCS1967785.1"
                     /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW
                     EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL
                     PLTDLLEKNGFSYQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
                     PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK
                     YLNIA"
     gene            1257..1397
                     /locus_tag="OQQ76_001220"
     CDS             1257..1397
                     /locus_tag="OQQ76_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967786.1"
                     /translation="MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFI
                     QI"
     gene            1411..2283
                     /locus_tag="OQQ76_001221"
                     /pseudo
     CDS             1411..2283
                     /locus_tag="OQQ76_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417258.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgcG family protein"
     gene            complement(2343..3641)
                     /gene="eno"
                     /locus_tag="OQQ76_001222"
     CDS             complement(2343..3641)
                     /gene="eno"
                     /locus_tag="OQQ76_001222"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HCS1967787.1"
                     /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG
                     SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN
                     KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA
                     DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS
                     NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF
                     LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG
                     IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI
                     KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA"
     gene            complement(3729..5366)
                     /gene="pyrG"
                     /locus_tag="OQQ76_001223"
     CDS             complement(3729..5366)
                     /gene="pyrG"
                     /locus_tag="OQQ76_001223"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HCS1967788.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY
                     INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK
                     ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM
                     AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA
                     NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
                     EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE
                     TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH
                     VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD
                     DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW
                     FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK"
     gene            complement(5594..6385)
                     /gene="mazG"
                     /locus_tag="OQQ76_001224"
     CDS             complement(5594..6385)
                     /gene="mazG"
                     /locus_tag="OQQ76_001224"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HCS1967789.1"
                     /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL
                     DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD
                     SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT
                     TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK
                     ANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL"
     gene            complement(6456..6791)
                     /gene="mazF"
                     /locus_tag="OQQ76_001225"
     CDS             complement(6456..6791)
                     /gene="mazF"
                     /locus_tag="OQQ76_001225"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="HCS1967790.1"
                     /translation="MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTG
                     MCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKRIAWRARGATKKGTVAPEELQLI
                     KAKINVLIG"
     gene            complement(6791..7039)
                     /gene="mazE"
                     /locus_tag="OQQ76_001226"
     CDS             complement(6791..7039)
                     /gene="mazE"
                     /locus_tag="OQQ76_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin MazE"
                     /protein_id="HCS1967791.1"
                     /translation="MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLII
                     EPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW"
     gene            complement(7117..9351)
                     /gene="relA"
                     /locus_tag="OQQ76_001227"
     CDS             complement(7117..9351)
                     /gene="relA"
                     /locus_tag="OQQ76_001227"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HCS1967792.1"
                     /translation="MVAVRSAHINKAGGFDPEKWIASLGITSQKSCECLAETWAYCLQ
                     QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS
                     VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL
                     REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL
                     HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV
                     RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV
                     EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE
                     MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
                     FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG
                     RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK
                     PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF
                     ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD
                     ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
                     LHGS"
     gene            complement(9399..10700)
                     /gene="rlmD"
                     /locus_tag="OQQ76_001228"
     CDS             complement(9399..10700)
                     /gene="rlmD"
                     /locus_tag="OQQ76_001228"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HCS1967793.1"
                     /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL
                     LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR
                     SKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK
                     QCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSSTLMILRHTAPLSSADREK
                     LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA
                     SALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ
                     NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA
                     TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK"
     gene            10757..13513
                     /gene="barA"
                     /locus_tag="OQQ76_001229"
     CDS             10757..13513
                     /gene="barA"
                     /locus_tag="OQQ76_001229"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase BarA"
                     /protein_id="HCS1967794.1"
                     /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA
                     GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH
                     LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI
                     ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR
                     GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN
                     VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI
                     ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL
                     NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR
                     DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR
                     GSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS
                     PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL
                     KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL
                     IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQ
                     QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE
                     VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGL
                     VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS
                     KILG"
     gene            complement(13745..15085)
                     /gene="gudD"
                     /locus_tag="OQQ76_001230"
     CDS             complement(13745..15085)
                     /gene="gudD"
                     /locus_tag="OQQ76_001230"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HCS1967795.1"
                     /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIMIIK
                     DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQ
                     TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKAT
                     PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE
                     SIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA
                     EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL
                     TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV
                     PEKPGLGVEIDMDQVMKAHELYQKHGLCARDDAMGMQYLIPGWTFDNKRPCMVR"
     gene            complement(15106..16446)
                     /locus_tag="OQQ76_001231"
                     /pseudo
     CDS             complement(15106..16446)
                     /locus_tag="OQQ76_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708582.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
     gene            complement(16448..17818)
                     /gene="gudP"
                     /locus_tag="OQQ76_001232"
     CDS             complement(16448..17818)
                     /gene="gudP"
                     /locus_tag="OQQ76_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GudP"
                     /protein_id="HCS1967796.1"
                     /translation="MFRSATTSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRAT
                     LSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWS
                     MFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWLPAQERGTAVSI
                     FNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQ
                     KELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYF
                     FITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKT
                     PIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSG
                     GLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIEL
                     KPVAGQ"
     gene            complement(18235..18684)
                     /locus_tag="OQQ76_001233"
     CDS             complement(18235..18684)
                     /locus_tag="OQQ76_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HCS1967797.1"
                     /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW
                     LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN
                     GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS"
     gene            complement(18702..19484)
                     /gene="truC"
                     /locus_tag="OQQ76_001234"
     CDS             complement(18702..19484)
                     /gene="truC"
                     /locus_tag="OQQ76_001234"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HCS1967798.1"
                     /translation="MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG
                     QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY
                     PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
                     KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT
                     IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS"
     gene            complement(19484..19813)
                     /locus_tag="OQQ76_001235"
     CDS             complement(19484..19813)
                     /locus_tag="OQQ76_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HCS1967799.1"
                     /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT
                     MEPLEWLQWVLIPRMHDLLNNNQPLPGAFAVAPYYEMALATDHPQHALILAELEKLDA
                     LFADDAS"
     gene            complement(20435..20980)
                     /gene="syd"
                     /locus_tag="OQQ76_001236"
     CDS             complement(20435..20980)
                     /gene="syd"
                     /locus_tag="OQQ76_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SecY-interacting protein"
                     /protein_id="HCS1967800.1"
                     /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST
                     TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ
                     TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
                     RKRTHLASNLAEFLNQLKPLL"
     gene            21048..21896
                     /gene="queF"
                     /locus_tag="OQQ76_001237"
     CDS             21048..21896
                     /gene="queF"
                     /locus_tag="OQQ76_001237"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HCS1967801.1"
                     /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL
                     KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ
                     TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY
                     EFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRQIDREKLLRY
                     LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST
                     TRLVRQ"
     gene            22008..23372
                     /gene="ppnN"
                     /locus_tag="OQQ76_001238"
                     /gene_synonym="ygdH"
     CDS             22008..23372
                     /gene="ppnN"
                     /locus_tag="OQQ76_001238"
                     /gene_synonym="ygdH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase"
                     /protein_id="HCS1967802.1"
                     /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS
                     GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR
                     DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
                     ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS
                     IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA
                     NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP
                     LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRVF
                     SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY
                     EICT"
     gene            23929..25218
                     /gene="sdaC"
                     /locus_tag="OQQ76_001239"
     CDS             23929..25218
                     /gene="sdaC"
                     /locus_tag="OQQ76_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease SdaC"
                     /protein_id="HCS1967803.1"
                     /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN
                     AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT
                     LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM
                     IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM
                     VFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA
                     DLAAAKEQNISILSYLANHFNVPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK
                     SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY
                     AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS"
     gene            25276..26643
                     /gene="sdaB"
                     /locus_tag="OQQ76_001240"
     CDS             25276..26643
                     /gene="sdaB"
                     /locus_tag="OQQ76_001240"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase II"
                     /protein_id="HCS1967804.1"
                     /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR
                     VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPGFIQDVNTHGRLMLANGQ
                     HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ
                     DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG
                     GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC
                     IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK
                     IVACD"
     gene            26755..27510
                     /gene="xni"
                     /locus_tag="OQQ76_001241"
     CDS             26755..27510
                     /gene="xni"
                     /locus_tag="OQQ76_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417278.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease Xni"
                     /protein_id="HCS1967805.1"
                     /translation="MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTH
                     AVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNE
                     ADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGV
                     QPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKL
                     ETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR"
     gene            complement(27615..28752)
                     /gene="fucO"
                     /locus_tag="OQQ76_001242"
                     /pseudo
     CDS             complement(27615..28752)
                     /gene="fucO"
                     /locus_tag="OQQ76_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417279.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
     gene            complement(28780..>29221)
                     /locus_tag="OQQ76_001243"
     CDS             complement(28780..>29221)
                     /locus_tag="OQQ76_001243"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HCS1967806.1"
                     /translation="PSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRPIPAIHY
                     MIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLA
                     HEVEVLAQLYLTILAITDPVPVLSDEEIAVVLEKFKTYGLRIEE"
BASE COUNT         7185 a         7703 c         6955 g         7378 t
ORIGIN      
        1 gaggtgttac gtggatatgt tgcttattac aagtactgct aatataaaaa cttgagaaag
       61 agataacggg ttatatggtg gtttatcccc gctggcgcgg ggaactctgt aaacataacc
      121 tattattaat taatgatttt ttaagccagt cacaatctac caactttaca gtatcacaca
      181 aacaacacat ccattatgtt aaagagtact taattcattg attaaaaagg taaatattta
      241 aaataactct atacaaatta aaatctacca aactttaccg caataatttt cactccagcg
      301 aaaaattaat gccactgaat ttgtagagaa tgctaatgat tagccctgga tgggtaaaat
      361 ggaggagttt tcagaggcga caaacaatat aaatgagtag aagtctttac aggttccacc
      421 catttataac gcttataaat gtttaatcag gcaatattta gatatttatg tgtttgcatc
      481 gacaaacgcc aattacgcgc aatgcaggtt tcaatgcaca aacgtgtggc atcatccttt
      541 tggctaatcg gctgcagtgc aatgactcgc ggtttatcat cggtcagcgt tgccaatagt
      601 tcatccagtg cttcaatatc gcgtacgcgc cccactggat gcttgatttc gttggctcgc
      661 tccagtgcct gtgacaacac gtcatagccg ccgcgcatgt tcagctttgg cgatacggta
      721 acccaggtat tcggtgtgca gcgtacttca tgagttccac tggtttcgat ctggtagcta
      781 aaaccgttct tttcgagcag gtcagtcagt ggcagcaaat catgaatgca aggctcacca
      841 cccgtaatca ccacatgccg cgcggtatat ccctgccgac caatgacagc cagcaaatct
      901 tcactgctcg ccgcccccca cttatcactc tctttggtct tcgccagaat gctgaaaagg
      961 gagacttccc gatcctcaag cttttcccag gtgtgtttgg tgtcgcacca ggcacagcca
     1021 accgggcatc cctgtaaacg aataaaaatg gcggggacgc cggtaaagta accctcacct
     1081 tgcagggtct ggaacatctc gttaatcggg tactgcatag cattctctgt gaagtggata
     1141 attgttaatt attgcagatc ctgccgcaac aatcatgtct tattaacatt ctgttacatg
     1201 cagatttaaa gaaaaatgcg aaacatatcg ttaataatta aagggagtaa cgtattatgt
     1261 cagaagaaaa taaagaaaat ggatttaatc atgtcaaaac attcaccaaa attatattta
     1321 ttttttctgt attagttttt aatgataacg agtctaaaat taccgatgcc gccgtcaatt
     1381 tatttatcca gatttaatga gaaatttata atgcgctatt tcatactaat gttcactttc
     1441 gtatgttcct ttgttgcagc ccaaccaact attgtcccac aattacagta acaagttacg
     1501 gatcttacga gtagcttaaa ctcacaagaa aagaaagaac tgacgcacaa gttagaatct
     1561 attttcaata atacccaagt gcaaattgct gtattaattg ttcccacaac caaagacgag
     1621 acaattgaac aatatgctac aagagttttt gacaattggc gtttaggaga tgccaaacgt
     1681 aatgatggga tactgatcat tgttgcctgg tcagatcgta ctgtccgcat ccaggtaggt
     1741 tatgggctgg aagaaaaggt aaccgatgct ctggctggag atatcatccg tagcaacatg
     1801 atacccgcat ttaaacaaca aaaatttgct cagggattag agctagctat aaacgctttg
     1861 aataaccaac tcacttcaca acaccaatat ccgactaatc cttcagaaag tgaatcagcg
     1921 tcttccagtg atcattatta ctttgctatt ttttgggtat ttgcagtgat gttcttccct
     1981 ttctggtttt ttcatcaagg cagtaatttt tgtcgcgcat gtaaaagtgg agtctgtatt
     2041 tcagcaatct atcttttaga tttattcctg ttctccgata aaattttttc cattgctgta
     2101 ttttccttct tttttacttt caccatattt atggtcttta cctgtttatg tgtacttcag
     2161 aaaagagcat caggtaaaag ttatcattca gacaacagcg gttccggtgg aggctcaagt
     2221 ggcggcggat ttagcggcgg tggcggttct tctggaggtg gcggcgcatc cggccgctgg
     2281 taactcaacc ataaaaaatg ccatcccgga ggctggcatt tttaaatcag ataaagtcag
     2341 tcttatgcct ggcctttgat ctctttacga ccgttgtacg gtgctttttc gcccagagct
     2401 tcttcgatac gaatcagctg gttgtattta gcaacacggt cagaacggct catagaacca
     2461 gttttgatct ggcctgcagc agtaccaaca gccaggtcag cgatggtagc gtcttcagtt
     2521 tcgccagaac ggtgagagat aactgcagtg tagccagcat ctttcgccat cttgattgca
     2581 gccagagttt cggtcagaga accgatctgg ttgaatttga tcaggatgga gttagcgata
     2641 cctttttcga taccttcttt caggatcttg gtgttggtta cgaacaggtc gtcaccaacc
     2701 agctggattt tgtcgcccag aactttggtc tggtatgcga aaccgtccca gtcagattcg
     2761 tccagaccgt cttcgataga aacgatcggg tactgtttgg tcagttcttc caggaagtga
     2821 gtgaattctt cagaggtgaa cgctttgttg ccttcgccag ccagaacgta tttaccatct
     2881 ttgtagaatt cagaagctgc gcagtccatc gccagagtga tgtctttgcc cagttcataa
     2941 ccagcagctt taacagcttc agcgataaca gccagagctt cagcgttgga acccaggttc
     3001 ggcgcatagc caccttcgtc accaacagca gtgttcatgc ctttcgcttt cagaactttt
     3061 gccaggtgat ggaaaacttc agaacccatg cggatggctt ctttcacagt tttcgcgcca
     3121 accggctgaa tcatgaattc ctggatatca acgttgttgt cagcgtgctc accaccgttg
     3181 atgatgttca tcatcggaac cggcatagag tatttgcccg gagtaccgtt cagttcagcg
     3241 atgtgctcgt acagcggcat acctttagca gctgcagcag ctttggcgtt agccagagat
     3301 acagccagga ttgcgttcgc gccgaatttg gatttgtttt cggtgccgtc caggtcgatc
     3361 atgatcttgt caatgccagc ctgatcttta gcatctttgc caatcagcgc ctgagcgatc
     3421 gggccgttta ccgcagcaac agctttggtt acgcctttac ccaggaaacg ggatttgtcg
     3481 ccatcgcgca gttccagagc ttcacgggaa ccagtagaag cacctgacgg agcagctgcc
     3541 ataccgacga aaccaccctc cagatgtact tcggcttcaa cagtcgggtt accacgggag
     3601 tcgatgattt cacgaccgat gatttttacg attttggaca ttaggttttc ctcaagtcac
     3661 tagttaaact gaaactccag acaaacaacg cgtacccagg gtacgcgttg ccgttctaac
     3721 ttttttactt acttcgcctg acgtttctgg aactcgctgg cggctttcac aaagcctgca
     3781 aacagcgggt gaccatcacg tggagtagaa gtaaactccg gatggaactg gcaagccacg
     3841 aaccacgggt gattcggaac ttcgatgatc tcgaccaact gatcatcccc ggaacggccc
     3901 gcaacgcgca gacctgcatc ttcaatctgt ttcaacagca tgttgttgac ttcgtaacgg
     3961 tgacgatgac gctcaacaat tgtcggcgca ttgtacagct ggcgaaccag gctatcgtca
     4021 accaactggc actgctgtgc gccgagacgc atggtaccgc cgagatcgct cttctcgcta
     4081 cgaacttcaa cgttgccgtt ttcatcgcgc cactcggtaa tcagcgccac aaccgggtac
     4141 ttacagtctg gcacaaattc cgtagagttg gcgttctcca tgttggcaac atggcgagcg
     4201 taatcaatta acgccacctg catacccagg caaatgccca gataaggaat attgttctca
     4261 cgcgcaaaac gcgcggtcgt aatcatgcct tctacgccac gatagccgaa accgccaggt
     4321 acgaggattg cgtccagacc tttaaggatt tcaacgccgc gcgtttcaac atcttgtgaa
     4381 tcgatcagtt tgatgttgac gctgacacga ttcttcagcc caccgtgttt cagtgcttcg
     4441 atcactgatt tataagcatc cggcagttca atgtacttgc cgaccatacc gatggtgact
     4501 tcacttaccg ggttcgcttc ttcgaagata acctgttccc attcggacag attcgcttcc
     4561 gggcagttta agctgaatcg tttacaaata taatcgtcca gcccctgaga tttcaacagg
     4621 cccggaattt tatagatgga atcgacgtct ttcagagaaa taaccgcttt ttccggaaca
     4681 ttacagaaca atgcaatctt cgcacgttcg ttcgccggaa cagcgcgatc tgaacgacaa
     4741 atcaggatgt caggctggat accgatggag agcagctctt ttacagagtg ctgagtcggt
     4801 ttggttttga cttcaccaga cgctgccatg tacggcacca gcgtcaggtg cataaacaga
     4861 gtgtgctcac ggccaatttc aacagccatc tggcgaatcg cttcgaggaa cggcaaggat
     4921 tcgatatcac ctactgtacc gccgatttct accagtacta cgtcatgacc ttcgccacct
     4981 tccagcacgc gctctttgat tgcgttagtg atgtgcggaa taacctgcac ggttgcgccg
     5041 aggtagtcac cgcggcgttc tttacgcaga acgtcagagt agatacgacc cgtggtgaag
     5101 ttgttgcggc ggctcatttt ggtacgaatg aaacgctcgt agtgccccag gtccaggtcg
     5161 gtttcagcgc cgtcttcagt aacgaacact tccccgtgtt ggattgggct catagtacct
     5221 ggatcgacgt tgatgtacgg atccagtttc atgatggtca cattgaggcc acgggcttca
     5281 agaatggctg cgagggaggc tgcggcaatg cctttaccca gagaggatac gaccccgccg
     5341 gtcacaaaaa tatagttcgt tgtcatgctg aacctgagaa gttaggttga aaagacgatg
     5401 gaataacctg gacgggaaag cagtataccc gaacatgacc tgtgccacaa actttcatta
     5461 tccctcctct tcgccagcgc actattgaaa tcaggagtga gaaaatagcc cctttggggt
     5521 aaatgttttt gacgcaaatc aagcgcttgt catttaaaaa atgacacaaa tggcgcttga
     5581 ccgcgtaatt cccttagaga tcaatttcct gccgttttac ctgttgccag acttcttcca
     5641 ttgtttcgag gtcaacacct gtcatttcca gtccacgcgc ggcaacaata cgctccactt
     5701 cgcgaaaacg acgctcgaat ttttcgttcg ctttttgcaa tgcgatttct gctttcgtcc
     5761 ctaaatggcg agccagatta accgtggcaa acagcaggtc ccccatttcc tcctccagtt
     5821 tagcctggtc gacaacagcc tgccgcgcct cgtacatcac ctcgtcgatc tcttcgtaga
     5881 ctttatcaac caccgggcca agcgtcgtcc agtcgaagcc aacgttggcg caacgtttct
     5941 ggattttttg cgcccgcatt aaagccggta aactacgagg aatatcgtcc agcgccgaat
     6001 gctgcgcttt ctgcgcgcgc tcttcggttt tgatttgctc ccaacgggca agcacttcac
     6061 tactgttttc ggcagaacta tcagcaaaaa catgcggatg gcgacgctct aatttatcgc
     6121 taatagcagc gcaaatatca ttaaagtcaa agcgcccttc ttcctgagcc atttgcgcgt
     6181 aaaacaccac ctggaatagc agatcgccca gttcaccgcg aagatcgtca aaatcttcac
     6241 gggcgatggc gtccagcact tcgtaggttt cttcaagggt gtaaggcgca atggtggcaa
     6301 atgtctgctc tttatcccac gggcagccgt tttccggatc gcgcaggcgc tgcataatag
     6361 tgagcaaacg atcgatttga ttcattgaat tgtcctgaaa attgcgggtc tgtcaggtgg
     6421 aaacctgtga ccagaataga agtgagttag taacactacc caatcagtac gttaattttg
     6481 gctttaatga gttgtaattc ctctggggca actgttcctt tcttcgttgc tcctcttgcc
     6541 cgccaggcga ttctttttac ctgatcagct aacgctacgc catcacgttc ctgaccggat
     6601 aaaacaactt cgaacggata tccttttgat tgcgttgtac aaggaacaca cagacacata
     6661 cctgttttgt tgttgtacat gaaaggactc aggacaacag ctggacgatg tccagcttgc
     6721 tcgctacctt ttgtcgggtc aaaatcaacc caaatcagat cgcccatatc gggtacgtat
     6781 cggcttacca ttaccagact tccttatctt tcggctctcc ccagtcgata ttctcgtgga
     6841 ggttttccgg cgtgatgtcg ttgaccagtt cagcaagcgt aaatacgggc tctttacgca
     6901 ctggctcaat aattaatttg ccatccacca ggtcaatctt cacttcatca tcaatattca
     6961 gattgagcgc ctgcattaac gtagccggga tccgcaccgc cggtgaattt ccccaacgct
     7021 ttacgctact gtggatcata acccttttct caaaccgcta tcatatgtag atacagtata
     7081 tatcaatcta tattgtagat acgagcaaat ttctgcctaa ctcccgtgca accgacgcgc
     7141 gtcgataaca tccggcacct ggttgagttt acccagcacg cggcccagca cctgcaggtt
     7201 gtaaatctca atggtcatgt cgatggtcgc cagttgctgt ttggtgtcgc tacggctggc
     7261 aacgccaagt acgttcacct tctcgttggc gagaatggtc gtgatatcac gtaacaaccc
     7321 actacgatca ttagccacca cgcggaccac cagcgaatat ccggcggagt agctctcacc
     7381 ccataccgcg tcaacaatgc gttctggcgc atgagagcgc agttccgcca gttgttcgca
     7441 atcggcgcgg tgtactgaaa taccgcgccc ctgggtaatg aagccgacaa tctcatctcc
     7501 aggaatcggc tggcagcagc gcgcgatgtg gtgcatcagg ttgccaacac cttcgactac
     7561 cacgcgaccg ttatctttac tgcggttttg cggcgtgtag cttttttgct gaagttgctt
     7621 cagcgcggcg gcgtcctgct cttcggcact cggcttatta aattgcgatt gcaggaagtt
     7681 caccatctga ttgagacgga tatccccgcc accaatcgcc gccagcaact cgtcgacatc
     7741 attaaagttg taacgcggca gcagatgttt ttctgcttct ttcaggctga tccccagatg
     7801 ttccagctcg tcgtcaagga tttgccgccc agccagaatg tttttgtcac ggtcctgttt
     7861 acggaaccag gcgtgaattt tcgaacgccc acggctggtt gtgacgtaac cgaggtttgg
     7921 gtttaaccag tcacggctgg ggttcggctg tttctgggtg ataatttcaa tctggtcgcc
     7981 catctgcagc tggtaggtga acggcacaat gcgcccgcca atttttgccc cgatgcagcg
     8041 gtgtccgaca tcactgtgga tgtggtaagc gaagtccagc ggcgttgatc ccgcaggcaa
     8101 atcaacgaca tcacctttcg gcgtaaagac atacacccgg tcgtcaaaga cctggctgcg
     8161 tacttcgtcg agcatttcgc cggaatcagc catctcttcc tgccacgcaa tcagtttacg
     8221 cagccaggca atccggtctt catgtcccga acgtgcgccg ccagctgccg cgccctcttt
     8281 atatttccag tgcgcagcaa cacccaactc tgcatcttca tgcatctgtt tggtgcggat
     8341 ttggatctca acggttttgc cacctggccc cagaaccacg gtatgaatag actgataacc
     8401 gtttggtttc gggttagcga cataatcgtc aaactcatcc ggcaggtggc gatagtgagt
     8461 gtgcactatc cccagtgcgg cataacaatc ctgtaaacgc tcggcgacaa tacgtaccgc
     8521 acgcacatca aacagctcat cgaaggcgag gttctttttc tgcattttgc gccagatgct
     8581 gtagatgtgt ttcggacggc catacacttc agctttaacg ccttcagctt tcatctcagc
     8641 gcgcagatga ccgacaaact cttcgatata gtgttcgcgg tcgagacggc gttcatgcag
     8701 cagttttgcg atgcgtttgt attcggtcgg gtgcagataa cggaagcagt aatcttccag
     8761 ctcccatttc agttgcccaa tcccaagacg gttcgccaac ggcgcgtaga tattggtgca
     8821 ctcttttgcc gccagtacgc gttcatcttc cggcgcatct tttacttcgc gcagatgagc
     8881 aatacgctcc gccagtttga tgaccacgca gcgaaaatca tcgaccatcg ccaataacat
     8941 ccggcgaacg ttatcgacct gttcggagga aacagaatca gtgtgcgtcg ctttcagctg
     9001 gcggatcgcc gccatatcac gcacgccgtg aataaggtta acgacagact taccgacgct
     9061 ctcacgcagc acatcttcgc tgactacgtt ggcatcggcc agagggaaca gcagcgccgc
     9121 ccgcagcgtg tcaatgtcca tacttaatgt cgagaggatc tccaccatct caacaccacg
     9181 ccacaataac agactggcat ccggatgccc ctgcgtctgc tgcagacaat acgcccaggt
     9241 ttcggctaag cactcacacg acttctggct ggtaataccc agacttgcga tccatttttc
     9301 cggatcaaat ccaccagcct tattgatatg tgcacttctt accgcaacca ttgtcctctc
     9361 ctttagggac cagacctgcc gaaatcggca aatcgtaact atttaacgcg cgagaaaagt
     9421 accatcgatt ccagatgtcc cgtgtgtggg aacatatcca gcatcgccag tcgcgcaatg
     9481 gtatatcctg cttttaataa cgcttcgcta tcccgagcca gcgttgcagg gttacaggat
     9541 acataaacta tacgaatagg ttccagtttt ataatttgct gcataacacc tgcggcacct
     9601 gctcgcgccg ggtccagcaa cactttatcg aagccgtttt tcgcccacgg ctgctttgtg
     9661 acatcttctt caagattttc gtgataaaac gtcacattct gtaagccatt aagacgcgca
     9721 ttctgctggc ctttttccac cagcgccgga acaccttcta caccgaccac actggcagct
     9781 tgtgtcgcca atggcagtgt aaagttgccc ataccgcaga acagatccag tacgcgatct
     9841 tcaggttgca catccagcca ttccaacgca ctcgctacca ttttttggtt cacacccgca
     9901 ttgacctgaa taaaatcgcg cgggctaaaa gttaagcgca acccgttaga gtcataccag
     9961 ggcatctcac cagagacggt ttcgagtatc tcactatcgg gggcgagata cagatccagg
    10021 ccttcagaat gcgaaaagcg ttccagtttt tcgcgatctg ccgaacttag cggtgcggta
    10081 tggcgcaaaa tcatcagcgt gctgctggtt gcctgtacca gttcaacatg accaagatgg
    10141 cgcattgctt gtaagctgcc caggcatgcc ctgactttgg gcagcaatgc ttcaagttgg
    10201 ggcactaaaa tgggacattg tttaacgtcg acaatgtcac tggagcccgc tttgcgaaac
    10261 cccatctgaa gttgctgtgt tttcggtaag tagttcagac ttaaacgcgc gcgacggcga
    10321 tagccccagg gaacatcggc gatcacttca gagacttcgt gtttcattaa tcgggcgagt
    10381 gccgcacttt tgcttcgctg ctgtaaatcc acgctggcgt gttgttgctg acagccgccg
    10441 catactccaa aatgaggaca gcgtggcgtt tcgcgttccg ggctatcgct taaccggcgt
    10501 acgactttag cgcgggcata ctgtttttta tcttcagtaa cagtaacttc cgcgttttcc
    10561 tgcggcaata atccggggat aaatagcgtt ttgccgttat gtcgcgccac gccctgacca
    10621 aaagagtcga ggtcgttgac tgaaacggtt atgatctgac gcgtcgtcgt gcgtcgtttt
    10681 gcagagtaga attgcgccat tggcgagact ttctcaattt aacagtgtga ccttaattgt
    10741 cccataacgg aactccatga ccaactacag cctgcgcgca cgcatgatga ttctgatcct
    10801 ggcaccgacc gtccttattg gtttattgct gagtatcttt ttcgtcgtgc atcgctataa
    10861 cgacttgcag cgtcaactgg aagatgccgg tgccagcatt attgagccgc ttgcagtttc
    10921 tactgaatat ggcatgagcc tgcaaaatcg cgaatctatc ggtcagttaa taagcgtact
    10981 gcatcgtcgc cattccgata ttgttcgcgc gatttcggtt tatgatgaaa ataaccgact
    11041 ctttgtcacc tccaattttc atcttgatcc ctcatcaatg cagctcggca gcaacgtgcc
    11101 gtttcctcgc cagctcactg tcactcgtga cggcgatatt atgatcctcc gcacgccgat
    11161 tatttctgag agttactccc ccgacgaatc gcccagtagc gatgccaaaa atagtcaaaa
    11221 tatgttggga tatattgcgc ttgagctgga tcttaaatcg gttcgcttgc agcaatataa
    11281 agagatcttt atttccagcg tgatgatgct gttttgtatc ggtattgcgc ttatttttgg
    11341 ctggcgctta atgcgcgatg taaccggtcc gattcgcaac atggtgaata ccgtcgaccg
    11401 catccgtcgc gggcaactcg acagccgggt ggaaggattt atgctcggcg agctggatat
    11461 gctgaaaaac ggtatcaact cgatggcaat gtcgctggct gcttatcacg aagagatgca
    11521 gcacaatatc gaccaggcga cgtccgatct gcgtgaaacg ctggagcaga tggaaattca
    11581 gaacgttgag ttggatctgg cgaaaaagcg cgcccaggaa gcggcgcgta ttaaatccga
    11641 gtttctggca aatatgtcac acgagctgcg tacaccactg aatggtgtta ttggctttac
    11701 ccgcctgacg ctgaaaacag aattaacacc aacgcagcgc gatcacctga atacgattga
    11761 acgttcggca aataatttgc tggcaattat taatgatgtt ctcgacttct cgaaactgga
    11821 agcaggtaag ctgattctgg aaagtattcc attcccacta cgcagcacgc tggatgaagt
    11881 cgttactctg ctggcacatt cttctcacga taaagggttg gaactgacgc tcaatattaa
    11941 aagcgacgtg cctgataacg tgatcggcga cccactgcga ttacagcaaa tcatcactaa
    12001 cctggtgggg aatgcaatta aattcaccga gaatggcaac attgatattc tggtagaaaa
    12061 acgtgcgctg agtaatacca aagtgcagat tgaagtgcag attcgggata ccggcattgg
    12121 tattcctgaa cgcgatcaat cgcgcttatt ccaggccttc cgacaggctg atgccagtat
    12181 ttcccgccgt catggtggca ccgggctggg gctggtgatt acacaaaaac tggttaatga
    12241 aatgggcggc gatatttcgt tccatagcca gccgaatcgc ggttcaactt tctggttcca
    12301 cattaatctc gatctgaacc cgaacattat tatcgaaggg ccatccaccc agtgcctcgc
    12361 aggtaagcgc ctggcctatg tcgaaccaaa ctccgcagca gcgcaatgca cgctggatat
    12421 tttaagtgaa acgccgctgg aagtggttta tagcccaacg ttctccgcgc tgcctcccgc
    12481 gcattacgac atgatgttgt taggcatcgc ggtgaccttc cgcgagccgc taacaatgca
    12541 acatgagcga ttagcgaaag cggtatcgat gaccgatttc ctgatgctgg cacttccttg
    12601 ccatgcacaa gtcaatgctg aaaaactcaa gcaagatggt atcggcgcgt gtctgctgaa
    12661 accattaaca cctacacgcc tgttgcctgc cctgacggaa ttttgtcatc acaaacaaaa
    12721 cacgcttttg cctgtaaccg atgaaagtaa gctggcaatg acagtcatgg cggttgatga
    12781 caaccccgct aacctgaaac ttatcggcgc attgctggaa gatatggtgc aacatgtgga
    12841 actttgcgat agcgggcatc aggcggttga acgggcgaaa cagatgccgt tcgatttgat
    12901 cttaatggat attcaaatgc cggacatgga tggcattcgg gcctgcgaac tcatccacca
    12961 gctcccccat cagcaacaaa cgccggttat cgcggtaacg gcgcatgcaa tggccgggca
    13021 aaaagagaag ctgcttggcg cagggatgag cgattatctg gcgaaaccga ttgaagaaga
    13081 gcgattgcat aatttgttgt tgcgctacaa gcctggcagc ggtatttcct ctcgcgtcgt
    13141 gacgcccgaa gtcaacgaaa ttgtggtgaa cccgaatgcg accctcgact ggcaactggc
    13201 actacggcag gcagcaggaa aaaccgattt agcgcgcgat atgctgcaaa tgttactcga
    13261 tttcctgcct gaagttcgca acaaagttga ggaacagctg gttggagaaa acccggaagg
    13321 cctggttgat ttgattcata aactgcatgg cagttgcggc tatagcggtg tgccgcgtat
    13381 gaagaatctc tgccaactga tcgaacaaca gctacgtagc ggtactaaag aagaagattt
    13441 ggagccggag ctgctggaac tgttggacga gatggataat gtcgcgcgcg aagccagcaa
    13501 aattctcggg taacggacgt cttgtcgagt agcaatcggc tttttatgac gctggtttca
    13561 gattggtgac aaagtgcctg tgtttatgcc ggatgcggcg ttaacgcctt atccggccta
    13621 caaaaccaat taaattcaat gaattaaaaa atgatgtaga cctgatacat agcacaacag
    13681 gctattttgc gtttagcatc agtctcaagc cggctccaga tagagccggt tttggttttc
    13741 tgtcttaacg caccatgcac gggcgcttgt tatcgaacgt ccagccagga atcagatact
    13801 gcattcccat cgcatcgtca cgcgcgcaaa gcccgtgttt ctgatacagc tcatgggctt
    13861 tcatcacttg atccatatcg atttctacac ccagccccgg tttttccggc acctgaacca
    13921 gaccgccttt gatctcaaac ggttctttgg tcaagcgctg attgccttcc tgccaaatcc
    13981 agtgcgtatc aatcgcggtg attttacccg gtgcagcggc ggcaacatgg gtaaacatcg
    14041 ccagggaaat atcgaagtgg ttgtttgagt gtgaacccca ggtcaggcca aattcatggc
    14101 acatttgcgc cacacgtacc gaaccttgca tcgtccagaa atgcggatcc gccagcggga
    14161 tatcaacgga ttgcagggag agcgtatggc ccatctgccg ccagtcggtg gcgatcatat
    14221 tggttgcggt cggcaggcca gttgcgcgac ggaactctgc catcacttca cgcccggaga
    14281 aaccttgctc cgcaccacac ggatcttctg cataagccag cgaccctttc aggtatttac
    14341 caattttaat cgcttcgttc agcgaccagg caccgttagg atcgagcgta atacgcgcct
    14401 gcgggaagcg ttgcgccagt gccacaatag actcggcctc ttcttccccg gccagtacac
    14461 cgcctttcag tttgaaatcg ttgaagccat atttttcata cgccgcttcc gccaggcgca
    14521 ccaccgcatc cggcgtcatc gcttcttcat gacgcaggcg ataccagtcg catgagtcat
    14581 ccggctggct ttgatacggc agcggtgtgg ctttgcgatc accgacgaag aacagataac
    14641 cgagcatttc gacttcgcta cgctgttgac catcgcccag cagggatgcc acgtttaccc
    14701 ccagatgctg ccccagcaga tccagcattg ccgcttctat tccggtaact acatgaatag
    14761 tggtacgcaa atcaaatgtc tgcaaaccgc gcccaccagc atcacgatcg gcaaaagtat
    14821 tacgcaccag cgtcagaacg tttttgtatt cacccagcgt tttacctacc accagcggaa
    14881 tcgcatcttc cagcgtttta cggattttct cgccgccggg aatttcccct acgccagtgt
    14941 gaccagaatt atctttgata atcataatat tacgcgtaaa gaacggtgca tgtgcaccac
    15001 tcagattcat cagcatactg tcatgacccg ccaccgggat gacctgcatt tcagtaacaa
    15061 caggcgtcgt aaattgagaa ctcatattta tgtccttttt cagaatcaat gacggccgaa
    15121 aacgggacgt ttacggtcaa aggtccagcc ggggatcagg tactgcatcg gacctgcgtc
    15181 gttacgcgca ccgccaggca gacgtttata ggcctcatgt gccttttgta cctgtttcca
    15241 gtccagttcc acgcccagac cgggcgcatc aggaacggca atttttccgt ttttaatctc
    15301 cagcggattt ttggtcaggc gacaatcgcc ctcctgccaa atccagtggg tatcgatagc
    15361 ggtaggatta cccggtgccg ccgcgcccac atgggtaaac atcgccagag agatatcgaa
    15421 atggttatta gaatggcagc cccaggtcag cccccagtcg tcgcaaagct gcgccacacg
    15481 gactgcaccg gaaagcgtcc agaagtgcgg atcggcaagt ggaatatcta ccgcattgag
    15541 catcaccgca tgacccattt cgcgccagtt ggtggcgatc atgttagtcg cgacgggcaa
    15601 gccggtcgcc cgccgaaact ccgccataac ttcacgaccg gagaaaccct gttctgcgcc
    15661 gcatggatct tcggcatagg taagaacatc attcagccct ttgcatagag aaatggcttc
    15721 atcaagtagc caggcaccgt tgggatcaac ggtaatccgc gcatcaggga agcgtttctt
    15781 caatgcacga acagtgttga tttcttgctc gccaggtaac accccgccct taagtttgaa
    15841 atctttaaag ccatagcgat cctgtgaggc ttccgccaga cgcacaacgg cttcgctgtt
    15901 catcgctttc tgatggcgca actgatacca ctcatggttg cccggcgtat tttccagata
    15961 aggaagatcg gttttggtcc gatcaccgat ataaaacaga taaccgagga cggtaatagt
    16021 ctcgcgttgc ttgcctggcc ccaacagttc gcagaccgga acattcagcg ccttacctag
    16081 caggtcaagc aaggcggctt ccagcgccgc cacggcatta acgcgcaatt caaaagtcta
    16141 ggcacctttg ccgaaggtat caaaatcggc tgcctgatta cctttatgca cctgctgaac
    16201 cactttattc aggcgcgcaa cttcctggcc cagaaccatc ggaatagcat cgaccagtgt
    16261 ttgataaatc acctctccgc ccggcgcttc accaatgccg gtatgcccgg cgttatcggt
    16321 gagtaccaca atattgcggg tgaaatatgc gttatgtgcc ccaccaatat taagcaacat
    16381 gctatcgtgc ccggcgaccg gaatgacttt catatcagta ataacaggac tggattgtgt
    16441 cgtcatctta ttgccccgcg acaggtttca gctcgatacg cttgatatcg cccaccagca
    16501 ccaggtagct cagtaccgcg attaaggcat gaacaccaac ataaatcagc gccccattaa
    16561 aggagccagt cgtgccaacg atataaccaa ttgcgattgg cgtgacgatg ccagaaatgt
    16621 taccgaacat gttgaacagg ccaccggaaa gaccgctgat ctcttttggc gcggtatctg
    16681 ccattactgc ccaacccagc gccccgatgc ccttaccgaa gaaggccagc gccataaagc
    16741 cgatgatcat ccactcaacg ttgacgtagt tgcagaacac catcaccatc gacagcaaca
    16801 tgcccattac gatcggtgtt ttacgcgcaa tgttcagcga tcccgtgcgg cgcatcagcc
    16861 agtcggaaat aatcccaccc agcacaccgc cgataaaacc gcaaaccgcc ggaacggaag
    16921 ccacaaagcc cgctttcaga atcgacatcc cacgcgcctg caccagataa accggaaacc
    16981 aggtaatgaa aaagtaagtc agggcgttga tacagtactg accgatataa acgccgatca
    17041 tcatccgtga cccgagcagt tgtttgatct gcccccactt cacgctgaac ggcactttaa
    17101 ctttggtgtt ttgctgatcc atattgatca gcgcgccacc cgcggcgatg tactccagct
    17161 ctttctgatt tacccccgga tgttgatttg gctcgtggat gactttcaac cagataaagc
    17221 tgatgacaat ccccagaccg cccataaaga agaagacgtg tgaccagccc acttcatgcg
    17281 tcagccagcc cataatcggc gcgaagatca ccgttgcgaa gtattgagcg gagttaaaaa
    17341 tcgacaccgc cgttcccctt tcctgcgccg gaagccaggc cgcaacaatg cgactgttgc
    17401 cggggaaaga tggcgcttca gcaagcccga ccaggaagcg cagagtaaac agggcaacga
    17461 taatgccgaa tccactaaag atatcgacga agccttgcag caaggtaaac atcgaccaga
    17521 taaagatcga ccagaagtag acgcgttttg aaccaaaacg atccagcaac caaccaccag
    17581 ggatctgccc gataacataa gcccatgaga aggcagagaa cacatagccc attcccacgg
    17641 gatcaaggcc gatatctttg gccatttccg aaccggcaat agaaagcgta gcgcggtcgc
    17701 cgtagttgaa ggatgtgacg ataaacaaca tcaccactat ccagtaacga gcattcgtgc
    17761 gtttttccac actgctcgca gcctgactta aagaactcgt tgttgcactc ctgaaaattc
    17821 gcgttagcca cgctcactct ggactgcgac atagccagga aatcagaggt gacgtagggt
    17881 gttttttgcc gtttttatag gtcgttcgcc gaatacggcg cgtgtttata tctggcaata
    17941 gcagtataaa aagcgcgcca tagcggctca ccgtgcaaca acacaacatt aatgcgttca
    18001 atgaggcccg attttggcat tagccctgga cggtggaatc cacttcacgg aaatgaaaac
    18061 aagaacaaga aaggaagggt taaaacaaag aaataaagaa gagtatgaaa tggatcgctt
    18121 gactccaggc aaacgccagt aaaaatccgc gctatgaagc agtttttact ggcatttgcc
    18181 tgaaaagatt cgattcagca ccgctaaaac gacatttacc gctcgctgaa catatcagga
    18241 caacagcgtg ccccactgtt cgacccacgg atttgattcc gtttccggtt ccgggttctc
    18301 actggcgtca atcaacagca tttcgccaac ccgctgagcg ctctgttcct gcaacaaggc
    18361 atcgaactgt ttgccgccat tgcagaaatt tacataactg ctgtcgccga gcgcaatcac
    18421 gccataacgc agattcggct ggaagcccag actatctttg attccctgaa agagcggcac
    18481 aatgctatca ggaaggtcgc cctgcccggt cgtggacgta accaccagaa catacttatc
    18541 ctgataaggc agccagtcgc ttaattcagg atcttcaaat accgttgctt tgtggccctg
    18601 tgcggtcaga attgcttctg cttcttccgc cactaacagc gaatttccgt acatggtgcc
    18661 gacaaaaata ccaatttccg ccataccgtt ttctccctgg attaggaact tatctctcca
    18721 tcctgacccg atggcgcact gaactcaacc ctttcatttt caggaagcag accgcgccag
    18781 ccaaattgtg ataacgcctg catccaggtg tcgtccaggc ccgcgtgaat agtcagcggc
    18841 tcgccagtaa aaggatgcgt caatgacaac tgactggcat gtagcattaa ccgctggagg
    18901 ccaaaatgct cagcaccgct gcgattctgg cgtaaatcgc catgtttgct atcgccaata
    18961 atcggatgac gcaaatgggc aagatgtcgg cgaagctgat gtttgcgtcc ggttttcggc
    19021 tccagttcca ccaggccgta gcgcgtggtc gggtaacgtc cggtcgctac cggcatttct
    19081 acggtcgcca gaccgcgata atgcgtcact gctggctgcg ggcctttatc ttcgcgggca
    19141 aatttatcag cgattttgtc cagttcttcc accagtggat aatccagcac cgcttcttcc
    19201 atcaaccatc cgcgcacaat cgcatggtaa cgtttctgga tttggtgctg ttcaaactgt
    19261 tgtgccagca gccgtccggc ctcgctggat aatcccatca acaacacacc agaagtgggt
    19321 cggtccagac gatgagcagt aaaaacatgc tgtcctatct ggtcacgcac ggtttgcatg
    19381 accactactt tctcgtcgcg atccagccag ctacggtgaa ccagccagcc ggagggttta
    19441 tttaccgcaa ccagccattc atcctgatag agtatttcca gcattagctc gcatcatccg
    19501 caaaaagagc atccagtttt tccaactcag ccagaataag cgcgtgttgc ggatggtccg
    19561 tcgccagcgc catttcataa tagggtgcaa cagcaaaagc gcccggtaac ggctggttgt
    19621 tatttaacaa atcgtgcatt cgcgggatca gcacccactg caaccactcc agtggttcca
    19681 tggtgtccat aaagaacggt tgggtactat taaattgatg cggctggggt tcatcgtttc
    19741 gccagtgctg atgttcacgc agtaacgctt caagcgcctg caactggaga cgaacgcggt
    19801 catgagtggt cataaagcaa cctcaataag aaaaactgcc gcgaaggata gcaggaataa
    19861 aaaaagggag cactgtattc acagcgctcc cggttcgttt cgcagcattc cagctacttt
    19921 tgttgctccc tgctcatcct tgacaacttt tcctctggcc ttgcggccaa tcgttcatcc
    19981 tgaactattg cttcctgctc acaccacccc gatgtgatac ttcatcctga agtgtccttg
    20041 gccttcctga ccagccgaat catcctgacc ggttctcatt ctccatcctg gaggtgtcct
    20101 ttaacgcgtc ctgcgtcatc ctcttcgctt catccagaag cctttccctg aaacaccatc
    20161 ttggtgtgtc ctgcagaagt gtcatcatcc tgatgttcac ttcgttgtct gactccctgt
    20221 cgacgaagat agaatcgtct ttttcgcgaa gtcttacaag gcgcttacag acaatgcctt
    20281 aaggaaaatt tcatatgaaa gttaagaatt aacaatcaac attttgattt taaatgaaaa
    20341 taacgattct tatcttttta agtattcgct tatttcctgg cgatctccta cagagtctgt
    20401 aagagatctc tcacaaccag atggggtatt tggattacag aagaggctta agttgattaa
    20461 ggaattccgc aagatttgag gctaaatgcg tccgtttacg tgttcccagc gtctctttgc
    20521 acacttcacc ggagagatta cacaccgaga tgacctctaa ctcttcttcc agcgtcgcga
    20581 taaatagcgt gggcggcagt tttagccttt tctgagtcac cagatgacca atcagatttt
    20641 cctgcacccg acggaagtcg tcttcactcc aggtttgcag caatgtcagt ttgatatcgc
    20701 caaactgcgc gtgcatatcc ccggcaaact gagtcgtata aaaggtatga attgtgggtt
    20761 gtatcacaat atcaaaagcg cgttcaaccg cgtttacatt ttgttccccg gtaaacggct
    20821 ggggttgcca gtatacggca tcttcggtag ttgaaataat gcacggtgaa ggaacaccgt
    20881 acagttcctc acttaacggc cagcttttat gctcttcatg ccacgcatcg cagtagcgtg
    20941 cagtaaaatc tttcagggct tgtgcggtca aatcgtccac taatttctct cttcacttaa
    21001 accagataca cttgtcgttt agtttatctg gtttatgacg gtgaaacatg tcttcttatg
    21061 caaaccatca ggcacttgcg ggcctgactc ttggaaaatc aaccgattac cgggatacct
    21121 atgacgccag cctactgcaa ggcgttccac gcagcctgaa tcgcgacccg ctgggtctga
    21181 aagcggataa cctgcctttt cacggtacgg atatctggac gctgtatgaa ctttcctggc
    21241 tgaatgcgaa aggtttgccg caggtcgctg tcggtcatgt tgaacttgat tacaccagcg
    21301 taaatctgat tgagtcgaag agttttaagc tctatctcaa cagttttaac cagacgcgtt
    21361 ttaataactg ggatgaggtg cgccagacgc tggagcgcga cttaagcact tgcgctcagg
    21421 gtaagattag cgtggcgtta tatcgtcttg atgaactgga aggccagccg ataggtcatt
    21481 ttaatggcac ttgcattgat gaccaggata tcactatcga taactatgaa ttcactactg
    21541 actatctgga gaatgccacc tgtggtgaaa aagtagtgga agagacgctt gtcagccacc
    21601 tgctgaaatc aaactgcctg atcacccatc aaccagattg gggttcgatc caaattcagt
    21661 atcgtggacg ccaaattgac agagaaaaac tgctgcgtta cctggtctca ttccgtcatc
    21721 acaacgagtt ccacgaacag tgcgtggaac gcatctttaa tgacctgtta cgcttctgcc
    21781 agccagaaaa attgagcgtt tacgcacgtt atacccgtcg tggcggtctg gacattaacc
    21841 cgtggcgcag taatagcgat tttgttccat cgaccacaag actggttcgg caataaattt
    21901 tttctcaatt ttgcgtgctg gattcacgca gaaggttgtg aaaggtcatc aggcagggct
    21961 attgtaatca aagggaatga cgatattcgt cccataagga gtttttcttg attacacata
    22021 ttagcccgct tggctccatg gatatgttgt cgcagctgga agtggatatg cttaaacgca
    22081 ccgccagcag cgacctctat caactgtttc gcaactgttc acttgccgta ctgaactccg
    22141 gtagtttgac cgataacagc aaagaattgc tgtctcgttt tgaaaatttc gatattaacg
    22201 tcttgcgccg tgaacgcggc gtaaagctgg aactgattaa tcccccggaa gaggcttttg
    22261 tcgatgggcg aattattcgc gctttgcagg ccaacttgtt cgcggtcctg cgtgacattc
    22321 tcttcgttta cgggcaaatc cataacaccg ttcgttttcc caacctgaat ctcgacaact
    22381 ccgtccacat cactaacctg gtcttttcca tcttgcgtaa cgctcgcgcg ctgcatgtgg
    22441 gtgaagcgcc aaatatggtg gtctgctggg gcggtcactc aattaacgaa aacgagtatt
    22501 tgtatgcccg tcgcgtcgga aaccagctgg gcctgcgtga gctgaatatc tgcaccggct
    22561 gtggtccggg agcgatggaa gcgccgatga aaggtgctgc ggtcggacac gcgcagcagc
    22621 gttacaaaga cagtcgtttt attggtatga cagagccgtc gattatcgcc gctgaaccgc
    22681 ctaacccgct ggtcaacgaa ttgatcatca tgccagatat cgaaaaacgt ctggaagcgt
    22741 ttgtccgtat cgctcacggt atcattatct tccctggcgg tgtgggtacg gcagaagagt
    22801 tgctgtattt gctgggaatt ttaatgaacc cggccaacaa agatcaggtt ttaccattga
    22861 tcctcaccgg cccgaaagag agcgccgact acttccgcgt actggacgag tttgtcgtgc
    22921 atacgctggg tgaaaacgcg cgccgccatt accgcatcat cattgatgac gccgctgaag
    22981 tcgctcgtca gatgaaaaaa tcgatgccgc tggtgaaaga aaatcgccgc gacacaggcg
    23041 atgcctacag ctttaactgg tcaatgcgca ttgcgccaga tttgcaaatg ccgtttgagc
    23101 cgtctcacga gaatatggct aatctgaagc tttacccgga tcaacccgtt gaagtgctag
    23161 ctgccgacct gcgccgtgtg ttctccggta ttgtggcggg taacgtaaaa gaagtcggta
    23221 ttcgcgccat tgaagagttt ggtccttaca aaatcaacgg cgataaagag attatgcgtc
    23281 gtatggacga cctgctacag ggttttgttg cccagcatcg tatgaagttg ccaggctcag
    23341 cctacatccc ttgctacgaa atctgcacgt aatctcccct cccccggtga cgtttgttgc
    23401 cgggttttct cgtttttggt cacttactca tcaactcatt tcatttgtta tatgaatgtt
    23461 tcttaccacc ctcacgcgac aaatatcatc acagttaata tgtcatacaa tttatgttgc
    23521 aacgcaaacg tttccctatt ttcataaacc gtattttatc gctatgaaaa agaaattatc
    23581 gccatgatta actaaaagta ttgatttttt cagttcaacc tacatatatt gcgcgccccg
    23641 gaagaagtca gatgtcgttt aatgggcaaa tattgccctt aaattctctt ttacttttga
    23701 tttacagagt aaagcgttgg gataatctat cttccaagta gattattgta tttgagatca
    23761 agatcactga tagatacata acttgtgtgt atctttccgc cctcaaatta ttacggcggt
    23821 aaatgattaa gccatcgccg atagacagat ttcattttta cggtcaggca ccttcccggg
    23881 ctgaactggc taaaagctga attatttgca ttcctccagg agaaatagat ggaaacgact
    23941 caaaccagca cgattgcgtc gaaagactct cgtagtgcct ggcgcaagac agacaccatg
    24001 tggatgctgg gcctttacgg cacggcaatc ggcgcgggcg tgctgttcct gccaatcaac
    24061 gccggtgttg gcggtatgat cccgctgatc atcatggcta tccttgcgtt cccgatgacg
    24121 ttttttgctc accgcggcct gactcgcttc gtactgtctg gtaaaaaccc gggcgaagac
    24181 atcaccgagg ttgtagaaga acactttggt attggcgcag gtaaactgat taccctgctc
    24241 tacttcttcg ctatctaccc gatcctgctg gtttatagcg tggcaatcac caatacagtt
    24301 gaaagcttca tgtctcacca gctgggtatg acgccaccgc cgcgtgcgat tctgtcgctg
    24361 atcctgatcg tgggtatgat gaccatcgtt cgcttcggtg agcagatgat cgttaaagcg
    24421 atgagtattc tggtgttccc gtttgttggc gtattgatgc tgctggctct gtacctgatc
    24481 ccgcagtgga acggcgcagc actggaaacg ctgtctctgg acactgcatc tgcaaccgga
    24541 aacggtctgt ggatgaccct gtggctggca attccggtaa tggtgttctc gttcaaccac
    24601 tctccgatca tctcttcttt cgccgttgcg aagcgtgaag agtacggcga tatggcagaa
    24661 cagaaatgct cgaagatcct ggcattcgca cacatcatga tggtgctgac cgtaatgttc
    24721 ttcgtcttca gctgtgtact gagcctgact ccggcagacc tggctgcggc taaagagcag
    24781 aacatctcga ttctgtctta cctggctaac cactttaacg taccggttat cgcgtggatg
    24841 gctccgatta tcgcgattat cgctatcacc aaatccttcc tcggccacta cctgggcgca
    24901 cgtgaaggct tcaacggtat ggtgattaaa tctctgcgtg gtaaaggtaa gtctatcgaa
    24961 atcaacaagc tgaaccgtat cactgcgctg ttcatgctgg taacgacctg gattgttgcc
    25021 accctgaacc cgagcatcct gggtatgatt gaaaccctgg gcggtccaat catcgcgatg
    25081 atcctgttcc tgatgccgat gtacgcaatt cagaaagtac cggcaatgcg taagtacagc
    25141 ggtcacatca gcaacgtatt cgttgtcgtg atgggtctga ttgcaatctc cgcaatcttc
    25201 tactctctgt tcagctaagt cctttcgcgc cactttcggg cggcgcttcc tccgttttaa
    25261 cgcgatgtat ttcctatgat tagcgtattc gatattttca aaatcggcat tggcccttcc
    25321 agttctcata ccgttggacc aatgaaagcg ggtaaacaat ttaccgacga tctgattgcc
    25381 cgtaacctgc ttaaagacgt gacccgcgtg gtggttgacg tgtacggctc gctctctctg
    25441 accggtaaag gccaccacac tgatatcgcc attattatgg gcctggcggg taacctgccg
    25501 gataccgtgg atatcgattc catccctggt tttattcagg atgtgaatac tcatggtcgc
    25561 ctgatgctgg caaacggtca gcatgaagtg gagttcccgg ttgatcagtg catgaacttc
    25621 cacgccgaca acctttctct gcatgaaaac ggtatgcgca ttaccgcgct ggcgggcgat
    25681 aaagtcgttt acagccagac ttactactct attggcggtg gctttatcgt tgatgaagag
    25741 cattttggcc agcaggatag cgcaccggtt gaagttcctt atccgtacag ttcagcagcc
    25801 gatctgcaaa aacattgtca ggaaaccggg ctgtcactct ctggcctgat gatgaaaaac
    25861 gagctagcgc tgcacagcaa agaagagctg gaacagcacc tggcgaacgt atgggaagtc
    25921 atgcgtggcg gtattgagcg cggtatttcc accgaaggcg tgttgcctgg caaactgcgc
    25981 gttccacgcc gtgctgcggc actacgccgg atgctggtca gccaggataa aaccaccact
    26041 gacccgatgg cggttgttga ctggatcaac atgtttgcac tggcagtgaa cgaagagaac
    26101 gctgctggcg gacgcgtggt gactgcgccg actaacggtg cgtgcgggat tatcccggca
    26161 gtgctggcgt actacgacaa gtttatccgc gaagtgaacg ctaactcact ggctcgttac
    26221 ctgctggtag ccagtgccat tggttctctt tataagatga acgcgtcaat ttctggtgct
    26281 gaagtcggct gccagggtga agttggtgtg gcgtgctcaa tggcggcggc tggtctggca
    26341 gaactgttag gtgcaagccc ggcgcaggtg tgcatcgcgg cggaaatcgc catggagcac
    26401 aacctcggtc tgacgtgtga cccggtcgcc ggacaggtcc aggtgccatg catcgagcgt
    26461 aacgccattg cggcagtaaa agcggtgaac gccgcacgta tggcgctacg ccgtaccagc
    26521 gagccgcgcg tctgcctcga taaagttatc gaaaccatgt acgaaacagg taaagatatg
    26581 aacgccaagt accgcgaaac ctctcgcggc ggcctggcaa tgaagatcgt tgcctgcgat
    26641 taatcgctct ccagaggcct cgttttgcga ggcctcttcc cgattactca tccagccgta
    26701 gcctgttccg gcatcgaatg ttacccttat cgcctgatct ttaagggggt tatcgtggct
    26761 gttcatttgc ttattgtcga tgcactgaat cttattcgtc gcattcatgc cgttcaggga
    26821 tcgccctgtg tcgaaacctg ccagcatgcg ctcgatcagc tcattatgca cagccagcca
    26881 acccacgcgg tcgccgtttt tgatgatgaa aaccgcagta gcggctggcg tcatcagcgt
    26941 ttaccagatt acaaagcggg tcgaccgcca atgccggaag agttgcacga cgagatgcct
    27001 gcattacgcg ccgcctttga gcaacgcggc gtcccgtgct ggtcaaccag cggcaacgaa
    27061 gccgatgact tagccgccac gctggcggtc aaagtgacac aggccgggca tcaggcaacg
    27121 attgtttcga cagataaagg ctactgtcag ttactttcac cgacattacg tattcgtgat
    27181 tacttccaga aacgttggct ggatgcgcca tttatcgata aagaatttgg cgttcaaccg
    27241 cagcagttgc ccgattactg gggacttgcg gggatcagca gttcaaaggt accgggtgtt
    27301 gcgggaatcg gaccaaaaag cgccacgcag ctgctggtcg agtttcagag tctggaaggg
    27361 atatatgaga atctggatgc ggttgccgaa aagtggcgca aaaaattaga aacccataaa
    27421 gagatggcgt ttctgtgccg cgatattgcc cgcttacaaa ccgatttgca tatcgacggc
    27481 aatttacagc aattgcggtt ggtacggtaa cagcgagccg gatgcaaacg attatcaaca
    27541 cattgaattt aatgcactta tataccggat aagacgcggc tagcgtcgta tccggcatta
    27601 tcacatcagc gcatttacca ggcggtatgg taaagctcta caatatcctc aagcgttgct
    27661 tcacgcgggt tgccaccggt acaaacatca tccagtgccg cctgcgccag tgccggaatg
    27721 tcttccttgc gtacaccaac atcacgcaaa tgtggcggaa taccgacatc acggttgaga
    27781 gcaaacaccg cttcaacagc ggcattacgc gcctcttcca gccactttca cgcccataac
    27841 gcgcgcgata tcgcggtact tctcaccggt aaagtcagcg ttatagcgca tgacatgcgg
    27901 taacaggatg gcgttcgcaa caccgtgtgg agtgttgtaa aacgcgccca gtggatgcgc
    27961 cataccatgc accaacccta acccaacatt cgagaagctc atacccgcaa catactgccc
    28021 gagcgccatt tcttctccgg catccttatc accagcaacc gatcctcgca gcgccccagc
    28081 aatgatttca atcgctttaa tgtgcagtgc atcggttagc gcccacgcgc cacgggtaat
    28141 atacccctca atagcatgag tgagcgcatc gacacccgtc gcagctttca gcgctggagg
    28201 cataccatcc atcatgtcag cgtcaataaa cgccacctgc gggatatcat gcggatcaac
    28261 gcaaacaaac ttgcgccgtt tctcttcgtc agtgatcacg tagttaatgg tcacttctgc
    28321 cgcagtacct gctgtggtag gaattgccag aatcggtaca ctgggtttat tggtcgggga
    28381 aagcccttcc aggctacgca catcggcaaa ctccgggttg ttgctgataa tgccaatcgc
    28441 tttacaagta tcctgtggag aaccaccacc aatagcgatc aggtaatccg cgccgctatt
    28501 ctggaataca ccgagccctt ctttgacgac agtaattgtt gggttgggca ctacgccgtc
    28561 gtaaatcgcc catgccagcc ctgcagcatc catcttatcg gtcactttcg ccaccacgcc
    28621 gcattgcacc agcgttttat cggtgacgat cagcgccttc tgataaccac ggcgtttcac
    28681 ctcatcggtt aaagccccaa cagcaccccg accaaaccat gccgtttcgt tcagaatcat
    28741 tctgttagcc atcatccttc tccttgttgc tttacgaaat tactcttcaa tccgtaaccc
    28801 ataggttttg aatttctcca gcactacggc aatctcttca tcgctcagca ctggcaccgg
    28861 gtccgtaatc gccaggatcg tcaggtaaag ttgcgccagc acttcaactt catgcgccag
    28921 ccataacgct ttttccagat tcacctcaca agcgataagc ccatgatgtt gtaacaaagt
    28981 tgccttacga tttttgagag ccagcgcaac atgttcagaa agttcgcgtg ttccaaaggt
    29041 cgcataaggc gcgcaaggaa tagaattacc acctgccgcc gcaatcatgt agtgaatagc
    29101 ggggatcggt cggttaagaa tggaaactgc tgtgcaatga acggcatgat tgtgaacaac
    29161 cgcgttggca tccggtctgc tttgataggc cgccatatgg aaacgccatt cgcttgaggg
    29221 g
//
LOCUS       DAJVUN010000035        29192 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.035, whole genome shotgun sequence.
ACCESSION   DAJVUN010000035 DAJVUN010000000
VERSION     DAJVUN010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29192
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.035"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..1754)
                     /locus_tag="OQQ76_001244"
                     /pseudo
     CDS             complement(1..1754)
                     /locus_tag="OQQ76_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE9 sensor domain-containing protein"
     gene            complement(1932..2843)
                     /gene="gsiD"
                     /locus_tag="OQQ76_001245"
     CDS             complement(1932..2843)
                     /gene="gsiD"
                     /locus_tag="OQQ76_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiD"
                     /protein_id="HCS1967807.1"
                     /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA
                     LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ
                     ISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL
                     GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTILLRHILPGT
                     VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA
                     LAIFLTVLAFNLLGDGLRDALDPKIKG"
     gene            complement(2846..3766)
                     /gene="gsiC"
                     /locus_tag="OQQ76_001246"
     CDS             complement(2846..3766)
                     /gene="gsiC"
                     /locus_tag="OQQ76_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiC"
                     /protein_id="HCS1967808.1"
                     /translation="MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD
                     AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT
                     ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG
                     WLPTVGADSWQHYILSSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV
                     VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA
                     EILLFSLEFILINLVVDVLYAAINPAIRYK"
     gene            complement(3784..5322)
                     /gene="gsiB"
                     /locus_tag="OQQ76_001247"
     CDS             complement(3784..5322)
                     /gene="gsiB"
                     /locus_tag="OQQ76_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HCS1967809.1"
                     /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY
                     DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT
                     DFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAH
                     PATAMISPAALEKYGKEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI
                     TWRPVADNNTRAAMLQTGEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVT
                     QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA
                     RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV
                     EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ
                     ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED
                     ADLQ"
     gene            complement(5342..7213)
                     /gene="gsiA"
                     /locus_tag="OQQ76_001248"
     CDS             complement(5342..7213)
                     /gene="gsiA"
                     /locus_tag="OQQ76_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter ATP-binding protein
                     GsiA"
                     /protein_id="HCS1967810.1"
                     /translation="MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGET
                     LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQSAAQMRHVR
                     GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQT
                     ILSRYPHQLSGGMCQRVMIAMALSCRPAVLIADEPTTALDVTIQTQILQLIKVLQKEM
                     SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLG
                     AMKGLDYPRRFPLISLEHPAKQEPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVT
                     REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS
                     PGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERV
                     GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD
                     LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAA
                     VPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR"
     gene            complement(7200..8165)
                     /gene="iaaA"
                     /locus_tag="OQQ76_001249"
     CDS             complement(7200..8165)
                     /gene="iaaA"
                     /locus_tag="OQQ76_001249"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1967811.1"
                     /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE
                     AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKTGAVAGVSH
                     LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTPLRYEQLLAARKEG
                     ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC
                     YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG
                     LIAIGHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ"
     gene            8369..9604
                     /gene="moeA"
                     /locus_tag="OQQ76_001250"
     CDS             8369..9604
                     /gene="moeA"
                     /locus_tag="OQQ76_001250"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HCS1967812.1"
                     /translation="MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDV
                     VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA
                     PVPEGCEAVVMQEQTEQTDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE
                     LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC
                     EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL
                     AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSCNTASGLPARQRVR
                     TASRLKKTPGRLDFQRGVMQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN
                     VDVGEWVEVEPFNALFGGL"
     gene            9604..10353
                     /gene="moeB"
                     /locus_tag="OQQ76_001251"
     CDS             9604..10353
                     /gene="moeB"
                     /locus_tag="OQQ76_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HCS1967813.1"
                     /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGC
                     AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIA
                     ITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ
                     ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAGYGKP
                     ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ"
     gene            complement(10429..11091)
                     /gene="fsa"
                     /locus_tag="OQQ76_001252"
     CDS             complement(10429..11091)
                     /gene="fsa"
                     /locus_tag="OQQ76_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCS1967814.1"
                     /translation="MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLP
                     QLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE
                     GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA
                     KVLAASFKKPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWLGAFGRT
                     SI"
     gene            11222..12121
                     /locus_tag="OQQ76_001253"
     CDS             11222..12121
                     /locus_tag="OQQ76_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415345.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HCS1967815.1"
                     /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDL
                     LYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGE
                     VKSVEEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPEIATALLQACHEAGIHTAVETC
                     LHVPWKYIAPSLPYIDLFLADLKHIADAPFKQWTDGNAAKVLDNLKKLAAAGKKIIIR
                     VPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLPYDAPEKPLD
                     APDLLDFAQQYACQKGLTATLRG"
     gene            12127..14559
                     /locus_tag="OQQ76_001254"
     CDS             12127..14559
                     /locus_tag="OQQ76_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HCS1967816.1"
                     /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL
                     DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL
                     ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT
                     SGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSE
                     HIERFAALAREMAATETRESRRDELLAIAENCDLIAHQPPQTFWQALQLCYFIQLILQ
                     IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH
                     SKASAGSPLYQNVTIGGQTLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM
                     SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYVAIGCIETAVGGKW
                     GYRCTGMSFINFARVMLAALEGGRDATSGNVFLPQEKALSAGNFNNFDEVMDAWDTQI
                     RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI
                     ANLGNSLAAVKKLVFEQGTIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT
                     VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK
                     AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK
                     LMILLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDA
                     QDDIIARTEHML"
     gene            14705..15520
                     /gene="ybiV"
                     /locus_tag="OQQ76_001255"
     CDS             14705..15520
                     /gene="ybiV"
                     /locus_tag="OQQ76_001255"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase YbiV"
                     /protein_id="HCS1967817.1"
                     /translation="MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIEFVVAS
                     GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL
                     NFVACGLQSAYVSENAPEAFVALMAKHYHRLKAVKDYQEIDDVLFKFSLNLPDEQIPL
                     VIDKLHIAFDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN
                     DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS"
     gene            15672..16937
                     /locus_tag="OQQ76_001256"
     CDS             15672..16937
                     /locus_tag="OQQ76_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1479 domain-containing protein"
                     /protein_id="HCS1967818.1"
                     /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA
                     TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW
                     DQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQTQMQARQSEEMANAQS
                     FLNRLWTFESDGKQWFNPDMSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ
                     RVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL
                     HVVPIPEAMAYVLLRTLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG
                     DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCKKNLAYAHKVKAALEKGASPGDFP
                     REDYETNWEGRFTLADLNIHGKRALGMDV"
     gene            complement(17178..18770)
                     /locus_tag="OQQ76_001257"
     CDS             complement(17178..18770)
                     /locus_tag="OQQ76_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HCS1967819.1"
                     /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM
                     KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI
                     YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW
                     KLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV
                     CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA
                     SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL
                     FKNLNLLLEVGEKLAVLGTNGVGKSTLMKTLVGDLQPDSGTVKWSENARIGYYAQDHE
                     YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG
                     KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI
                     TPERVIDFSGNYEDYLRSKGIE"
     gene            18989..19909
                     /gene="ldtB"
                     /locus_tag="OQQ76_001258"
     CDS             18989..19909
                     /gene="ldtB"
                     /locus_tag="OQQ76_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1967820.1"
                     /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT
                     IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV
                     INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
                     YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI
                     KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS
                     VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN"
     gene            complement(19968..21086)
                     /locus_tag="OQQ76_001259"
     CDS             complement(19968..21086)
                     /locus_tag="OQQ76_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HCS1967821.1"
                     /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT
                     IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL
                     FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
                     AQMAPLAGAMMLTLLLLCWCCFPGKVLQYHTGVQTPEWKPRLVWSCLGLYIVFLTALE
                     FKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS
                     HLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGGFGLLPGSLASLIA
                     LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN"
     gene            complement(21083..21550)
                     /gene="mntR"
                     /locus_tag="OQQ76_001260"
     CDS             complement(21083..21550)
                     /gene="mntR"
                     /locus_tag="OQQ76_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-binding transcriptional regulator
                     MntR"
                     /protein_id="HCS1967822.1"
                     /translation="MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL
                     ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA
                     QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK"
     gene            21736..21864
                     /gene="mntS"
                     /locus_tag="OQQ76_001261"
     CDS             21736..21864
                     /gene="mntS"
                     /locus_tag="OQQ76_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganase accumulation protein MntS"
                     /protein_id="HCS1967823.1"
                     /translation="MNEFKRCMRVFSHSPFKVRLILLSMLCDMVNNKPQQDKPSDK"
     gene            22136..23719
                     /gene="opgE"
                     /locus_tag="OQQ76_001262"
     CDS             22136..23719
                     /gene="opgE"
                     /locus_tag="OQQ76_001262"
                     /EC_number="2.7.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS1967824.1"
                     /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA
                     AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST
                     EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN
                     LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT
                     YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD
                     GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK
                     NTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLY
                     TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP
                     FMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF
                     QLQKVDYNHLGTDIFDPKP"
     gene            complement(23768..24283)
                     /gene="ompX"
                     /locus_tag="OQQ76_001263"
     CDS             complement(23768..24283)
                     /gene="ompX"
                     /locus_tag="OQQ76_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpX"
                     /protein_id="HCS1967825.1"
                     /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM
                     GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI
                     YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV
                     GTWIAGVGYRF"
     gene            complement(24336..24401)
                     /locus_tag="OQQ76_001264"
     CDS             complement(24336..24401)
                     /locus_tag="OQQ76_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967826.1"
                     /translation="METFCYMKWPVRHHKSRRVSH"
     gene            24636..25523
                     /gene="rhtA"
                     /locus_tag="OQQ76_001265"
     CDS             24636..25523
                     /gene="rhtA"
                     /locus_tag="OQQ76_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HCS1967827.1"
                     /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVT
                     ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA
                     LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
                     AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILS
                     TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS
                     MGSTLTVRKESKIKELDIN"
     gene            25822..26325
                     /gene="dps"
                     /locus_tag="OQQ76_001266"
                     /gene_synonym="pexB"
     CDS             25822..26325
                     /gene="dps"
                     /locus_tag="OQQ76_001266"
                     /gene_synonym="pexB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001730644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein Dps"
                     /protein_id="HCS1967828.1"
                     /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS
                     LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT
                     PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW
                     FIESNIE"
     gene            26729..27475
                     /gene="glnH"
                     /locus_tag="OQQ76_001267"
     CDS             26729..27475
                     /gene="glnH"
                     /locus_tag="OQQ76_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter substrate-binding
                     protein GlnH"
                     /protein_id="HCS1967829.1"
                     /translation="MKSVLKVSLAALTLVFAVSSHAADKKLVVATDTAFVPFEFKQGD
                     KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID
                     FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN
                     IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL
                     RDKVNGALKTLRENGTYNEIYKKWFGTEPK"
     gene            27614..28273
                     /gene="glnP"
                     /locus_tag="OQQ76_001268"
     CDS             27614..28273
                     /gene="glnP"
                     /locus_tag="OQQ76_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HCS1967830.1"
                     /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR
                     TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG
                     AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYIILPLALRRMLPPLGNQWIISIK
                     DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI
                     L"
     gene            28270..28992
                     /gene="glnQ"
                     /locus_tag="OQQ76_001269"
     CDS             28270..28992
                     /gene="glnQ"
                     /locus_tag="OQQ76_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000569103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HCS1967831.1"
                     /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL
                     RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP
                     LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF
                     DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG
                     NPQVLIKNPPSQRLQEFLQHVS"
BASE COUNT         7262 a         7767 c         7163 g         7000 t
ORIGIN      
        1 atcttcagca atggtaatga acttcagcgg tgaaatgatc cccctctccg cagaaaccca
       61 acggcacaac gcctccgcgc ccagaatggc gcgggtgtta atatcaacga tcggttgata
      121 gacgaggaat agttcgccaa tttccattgc atggcgaata ttacgcgcaa tccagatatt
      181 ctcttctatt tcgttgagtt tcgcgtcatc acagaaaata aactcggaga acatatggtc
      241 acggatactg gaaatcgcca gtttcagttt ttctgcgtaa ctccaggcgt tttccccctg
      301 caaaggttca caaatggcag acttatggat gcgcagattg cggtagccaa agctgctgtc
      361 aaaatcgttt accatcgcta ttttacgggt aaatgtctgt acattttccc gacacagaag
      421 taaatagaga tcggcattga atgtcacgat atcgcagcat tgcgcatatt tctcggcaat
      481 tcgctgacac aatttcctga cgattttatt gcgttcatca acaccaaaca ccgcttccac
      541 ggcttccaga ccacacagtt tgatgatccc cacagccaga tactgattat tgttggactc
      601 aataatcgcc atatttttaa taaaaccgct ttcctgatcg taagagatca gtgagagcaa
      661 tttatttgac cgttcaattt cggcatcttt catttccgcg atcgaatttt tgatgctgat
      721 aatctctttc gcatcgcctt cgcgaatttt cagagcctcg atctgatccg ttgagtcggg
      781 caaaaatgcc agcgtattaa ccagctcggt catttcagaa aattgccgac ggaacacacg
      841 agtggtcatg aaatatacca ccagcaacac gataataatg aacgcaaacg gtagataaaa
      901 aagtttatct gatgcgttca ataaattacc gccaggataa taaaaataga tttcgaacaa
      961 tgcattattt ggcactgctg atgtctttgc aatatactcc gtatcgacag aatcaataat
     1021 atgataatta ccttcgctat tataaataat cagtttttca cgagcgagtt gattcttggc
     1081 aatgatctca tgaccttgtt tcaaaaatag aacttcatca ttagcgctga tttgatcaag
     1141 atactcgttc aaataccgcc agtttaaatc gacatgaatt ttatctaccg ctaacaaatc
     1201 gtgatctttg ccgttgatac gtagcgtaaa agagatacat tttttacccg gacgatcaaa
     1261 gcaattgtat gccggattcc agctgttgtt agagtcatct gaagccaccg accacggtcg
     1321 tttcgatggg ttaaaatcgg caaaaataac ccgccctgac tcgtcgacaa gcggtccatt
     1381 tacttgttcc tgatgataaa caacgatttt atcattcgcc ctccgtgaaa agagataata
     1441 tttattatca tcaagtacca gtcccaccga gtctaaaaat ggcatcattt ccattttcag
     1501 aatcacggcg cgttgaatct cctctgtatt tataaataca gtgagtcctt taatgtcagg
     1561 gccgaacgtt caatatcttt aaagaaatag ccaacgtttt tctgaataag ttcaaagcgg
     1621 ctatcggcac gttttaccgc gcgttccgat accagttgat agttaatgat gaaaaaaaga
     1681 ccaataaatg acagtgctgc caataaaaat aaaattatca gccttatctt tatcttttcg
     1741 tataaactca gcatgttaat acatttaaca aaataactat ctgaacgctg tgccgctgca
     1801 aaaatagtcc cttgctgcgg ctttttaacc aaattacccg attctacaaa atcagcagaa
     1861 agttacaaca cttgcttagg gcaataattt cctgtgaggt gattaccctt tcaagcaata
     1921 ttcaaacgta actatccttt aattttcgga tccagcgcat cgcgtaaacc atcgcccaac
     1981 aaattgaacg ccagtacggt cagaaaaata gccagggccg gaaaaacagc gacatgcggc
     2041 gcgataacca tatccgctcg tgcctcattg agcattgctc cccactctgg tgtcggcggc
     2101 tgcgcaccga ggccgagaaa tgacaggctg gcggcagaga taatcgaggt gccaatgcgc
     2161 atggtgaaaa acaccacgat agacgagacg gtcccaggca agatatgacg caataaaatg
     2221 gtcatatcgc tggcaccaat actgcgtgct gactcaataa aggtttgctg tttcaacacc
     2281 agcgtgttgc cgcgcaccag tcgggcaaac gcggggatgg aaaaaatggc gactgcgata
     2341 atcacgttag caatgccgct tcccaacacc gcaacaacag cgatcgccag taaaataccc
     2401 gggaaggcaa acagcacatc gcaaatgcgc atgatcagcc gatcccacca gccttcataa
     2461 tatccagcca acaagcccag caacgtcccg atcgccgcac cgataaacac ggcaaacacg
     2521 cccgccgcca gcgagatttg cgcaccaacc aggacacggc tgaaaatgtc gcgccccagt
     2581 gaatcgacgc caaaccagtg ctgcaaagaa ggtccgttat tcagattgtc ataatcaaaa
     2641 taattttcgg cgtcataggg agcgatccag cgtgcaaaaa tggccaccac aatcaataaa
     2701 ataacgaata atgcggcggt catcgccata tgctgacggc gaaatcgtcg ccagaattca
     2761 tgccacggtg tacgcacctg gtcaggtttg accagtggca tggcgtttaa caccgcctga
     2821 cgtcgccagt taaatagtcg catccttact tgtacctgat agccgggtta atggcggcgt
     2881 aaagcacatc caccactaag ttgataagaa taaattccag cgagaaaagc agaatttccg
     2941 cctgaatcac cgggtaatcg cgcatttcta cggagtcaac gagtaagcgt ccaagtccgg
     3001 gccagttgaa aactttctcc accacgatag aaccaccgag caaaaagcca aactgtaagc
     3061 ccatcatggt cactaccggg atcatcgcgt tacgtagccc gtgtttgagg acaacccagg
     3121 tttcgctcac ccctttcgcc ctcgcggtac gcatataatc ttcgcttaaa acatcgacaa
     3181 acgacgcgcg ggtaaagcgc gccatcacgg ctgccactgc cgcgccgagc gtcagggagg
     3241 ataaaatgta gtgctgccaa ctatctgctc ccacggtagg cagccagccc agttcaacgg
     3301 agaatacctg aattaaaagc atccccagcg caaatgccgg aaacgagatc cccgacaccg
     3361 caatggtcat actcaatcga tccggccaac gattacgcca gacggcggcg ataattcccg
     3421 ccgccatacc aaatatcacc gcccagacca tactggttat ggtcagccac agcgttggca
     3481 taaagcggct ggcaatctca tcggcaaccg gacgacgcga caccatcgac aggccaaaat
     3541 ccccctgcac agcattgctg atatagtgcc agaactggtg atacagcggc tgatccaacc
     3601 ccagctgctg acgcaccagt tctataacct gcgcatcagc ttcgggcccg gcaatcaatc
     3661 gcgccggatc gccgggcagc atatgcacaa ataaaaacac cagcaccgag acgataaaca
     3721 gcgtcggaat caaccccagt aagcgtttga taacgtaatt aagcattcca ctccctgcgt
     3781 tgcttattgc aaatccgcgt cttcaaagct gaagccggtg tctggcatga tccaaaaacc
     3841 ggtcaggttt ttactgtgtg ccgacaccag tttttctacc accagcggga tccacggcga
     3901 ctcttgccag atgatatcct gcgccgcctt atacaagcgg gtcttttccg ccggatcatt
     3961 agttttcagt gcctgagcca ggaagtcgtc cacctgttta ttgctgtaaa atgcggtatt
     4021 aaacagcgtc ggtggccagt tttgcgaggc gaacagtggc gatagcgccc agtccgcttc
     4081 gccggttgaa gccgaccagc cagtgtagaa catccgcacg ccgctctctt tttgcccttt
     4141 accttcaact tctgccgccc gctgtccggc atccatcgcg gtcacctggg ctttaatccc
     4201 gacctgcgct aactgctgct gggtaaattg cagcactttc tgcgcggtgc tgtggttatg
     4261 tgacgaccac agcgtggtac tgaaaccgtt gggatatccc gcctctttca gtaattcgcg
     4321 cgctttcact ggatcgtaag gccacggttt ataactttgc gcgtaggcga tacttggcgg
     4381 taccacacca gtagctggcg ttgcatagcc cgcaaaggca actttcacca gcgccggacg
     4441 gttaatggcg taattcagcg cctcacggac cttcgggtta tcgaacggct tttgcgtcac
     4501 gttcatactg atataacgct gcataattga cggactggcc atcaactcga tatttttgtt
     4561 tttctccagc agtgcggcct gctcgtaggg aatggggaaa gcaaactgcg cttcaccggt
     4621 ttgcagcatt gccgcgcggg tgttgttatc cgccaccgga cgccaggtta tgctgtccag
     4681 tttgggcaat cctggctgcc agtaacccgc gaattttttc accttcacaa aatcggtctg
     4741 attccaggta tccagttcat acggtccggt tcccaccgga tgaaaaccaa tctccttgcc
     4801 atatttttcc agcgctgccg gtgaaatcat cgcggtcgcc ggatgggcaa gaatattaat
     4861 aaacgctgag aacggctgtt tgagggtaat ctttaccgtt gtcggatcga tcgcctccgt
     4921 tttggcaata ttcttataca ggttatagcg tttaagatga ttcgccggat cgctggcccg
     4981 gtccagattc gctttcaccg ccgcggcgtt gaaatcggtg ccatcctgga atttaattcc
     5041 ttcccgcaat ttcacggtgt aagtaatgcc gtcatcggaa acggtataac tctccgccag
     5101 cacgtttttc agtttcatct ctttatccag accgaacagc ccctggtaaa acgatttcgc
     5161 tacggcctga gataacgtgt cattcgcgtc atacggatcg agcgtggtga aattcgatcc
     5221 taccgccacc accacatctt tggcagcgaa tgcacaagat gccatcaacg ctgtcgcaat
     5281 gcccagcgcc actaacccac tacggtgtac agctcttgcc attttattct ccgcctgaat
     5341 gttatctacg catgaatgcg tattctgatt gtggttgtgc gacgtaatgc cccggcccga
     5401 cgcattgcaa cgagacggct gccacctctt cgccacgcag atgaatattg ctgggaagat
     5461 cgtccgacag cagtacacgc tgcggtcgtt gtcgggacgg ttcagcgacc ggaactgccg
     5521 ccagtaattt acgcgtataa ggatgctgcg ggttttcgaa gaccgcgcgc cgtggaccaa
     5581 tttcaacaat ttgcccgaga tacatcaccg ccacacgatg actaatccgc tctaccacgg
     5641 ccatatcgtg ggagataaac agatacgcaa tgccgaaatc acgctggaga tcgagcaaca
     5701 agttgataat ctgcccgcga atagaaacat ccagcgccga aacggcttcg tcggcaatga
     5761 tcacttttgg attcaatgcc aacgcgcgag caatgcagat gcgctggcgc tgaccgccgg
     5821 aaaactcatg cgggtaacgc caggcatgtt caggtaacag gcccacgcgc tccagcaacc
     5881 acgcaacgcg tgcagccgcg tctttacctg gcaataaacc gtgtacacgc agcggttcga
     5941 taatcgaatc accgatggtc tgacgtgggt ccagcgaagc gtaagggtcc tgaaaaataa
     6001 actgaatatc ccggcgcaat gcctgaagtt tgccaggtga caaggtatcg attcgctgac
     6061 cgttaaagat aatttcgccg ccctgcgatt cgaccaggcg cagcaacgcc cgcccggtag
     6121 tggatttacc gctgccagac tcgcccacca gcgatagcgt ttcgccaggc cagagatcaa
     6181 aactgacttt ctcaacggca tgcacttccc gcgttacgcg attcaacaaa ccgctgcgca
     6241 aagggaaacg ggtgacaaga ttacgcactc gtaaaacagg ttcgccatcc accaccgttt
     6301 tctgctcgat ggggggttcc tgtttcgctg gatgttcaag cgatatcaat gggaaacgtc
     6361 ggggataatc taaccctttc atcgcaccaa gttgcggaac agcagctaac agcgcacggg
     6421 tgtaaggatg ttgcggtgca tgaaaaatct gttcgacggt acccgtttcc accgcctcgc
     6481 cctgatacat caccagtacc cgatcggcta tctctgccac cacgcccata tcgtgcgtga
     6541 taaagataac gcccatcgac atctcttttt gcaatacttt gattaattgc aggatctgcg
     6601 tctgaatagt gacatccagc gcggtggttg gctcatcggc aatcagcacc gccgggcggc
     6661 atgacagcgc catcgcaatc atcactcgct ggcacatccc gccagagagt tgatgcggat
     6721 aacgtgaaag aatggtttgt gcctcaggaa tgcgtacctg atccagcatc cgcttcgcct
     6781 cgaccatcgc ttcttcacga ctggcgttct gatgcagacg aattgattcg gcaatctgtt
     6841 cacccacagt aaataccggg ttcagcgatg tcatcggctc ctgaaatatc atcgccatat
     6901 ccgcaccgcg aacatggcgc atttgtgcag cgctctgctc gctaagttca atcacttcgc
     6961 gactgcgccg ctgcaacagc attttatcgc actgtactaa accgcccgcc tgttccaaca
     7021 ggcgcatcaa tgccaacgca gtcactgact taccggagcc ggattcgcca acaattgcca
     7081 gcgtctcacc gcgttgcaga ctaaaagaga gattgcggac cgcagctatt ttctgctggt
     7141 cctgcataaa ggcaatattc agattttcaa ccgccagcac attaccggca tcaagttcat
     7201 cactgtgtgg caacggtgtc ccctttttca cggtagatac cggtggttgg cgtatcgcct
     7261 gcgtagcccc aggcgcgata cattccttcg gtgttaaacg gtagcgcgac attcccttca
     7321 tggccgatag cgattaagcc accgctaccg ccaagcgcag ggagtttttc cattactacc
     7381 cgctcgcagg cttccgcgag acttaatccg ccgtaatcca ttaacgcggc gatgtcatat
     7441 gccgccagcg cgcggatgaa gacttcgccc gtgccggtac aagaaaccgc cacactggcg
     7501 ttattggcgt agcatccggc acccactaag ggactatcgc caactcgtcc gggtaattta
     7561 ttggtcattc cgcctgtgga cgtggctgcc gccaaattgc cgtctaaatc caacgccacg
     7621 gcccccacgg tgcccatttt ctgtttttca tccagtggcg caccgctatg gtcgaggacg
     7681 gttgcccctt ccttgcgcgc tgccagtagt tgttcataac gcaaaggcgt ggagaaaatc
     7741 tccggcgaga cgcgctccat gccacgagca aacgcaaaat tttctgcccc ttcgccaatc
     7801 atcatcacat gcgggctttg ctccatcacc agccgggcgg caagaaccgg attacgcaga
     7861 tgactaacgc ccgccaccgc accggttttc agggtgttac catccatcac acaggcgtcc
     7921 agttcatggg tttcatcacg cgtaaagaca gcgccaattc cggcgttaaa cagtggacac
     7981 tcttccagca gacgcaccgc ttccgtcacc acatccagcg cactttcgcc cgcttccagc
     8041 attttctgcc cggtttcaac aatggcagac aacgcctcaa tgtagcgtaa ttcctgttgc
     8101 agactcatct gcgcgcggct aattgcacct gcgccaccat gaattgcaat gactgctttg
     8161 cccatagtat tcgtccatta agggtggctc gccacttttg ctataaatat cagaattttt
     8221 atgaattact cattcaattt ttgaatatag aaagatggat atggcatgta aaggcaggag
     8281 ccaacgctac gcccgaggtg gcatacagtc tgtggcgttt ttctgacata ataggcaaat
     8341 tcgattttgc ctccgcagga gtgttttcat ggaatttacc accggattga tgtcgctcga
     8401 caccgcgctt aatgagatgc tttctcgcgt caccccactg accgcccagg aaacgctgcc
     8461 actggtacag tgttttggtc gtattctggc gagcgatgtc gtttcgccgc ttgatgttcc
     8521 ggggtttgat aactccgcaa tggacggcta cgcggtgcgt ttagccgata ttgcctccgg
     8581 gcaaccgctg cccgttgccg gtaaatcctt tgccggtcag ccgtatcatg gtgaatggcc
     8641 tgcgggcacc tgcattcgta ttatgaccgg tgcgccggtg ccggaaggct gcgaagcggt
     8701 ggtgatgcag gagcagactg aacaaacgga caatggcgtg cgttttactg ctgaagtgcg
     8761 tagcgggcaa aatattcgcc gtcgcggtga agatatctct gcaggtgcgg ttgttttccc
     8821 ggcgggaact cgcctgacta ccgcagagct gccagtaatt gcttcactgg ggattgccga
     8881 agttccggtg attcgtaaag tgcgtgtagc gcttttttct accggtgatg aactccagtt
     8941 gcccggtcag ccgctgggcg acggccaaat ctacgacacc aaccgtctcg ccgtacacct
     9001 gatgttagaa cagctgggtt gcgaggtaat caacttaggg attatccgcg acgatcccca
     9061 tgccctgcgc gccgcattta ttgaagccga cagccaggcg gatgtagtga tcagttccgg
     9121 cggtgtttca gtgggtgaag cggattacac caaaacgatt cttgaagagc tgggggagat
     9181 cgccttctgg aagctggcga ttaaaccagg taaaccgttc gcgttcggta aactcagcaa
     9241 tagctggttc tgcggcctgc cgggcaaccc ggtttcagcg acgctgacct tctatcaact
     9301 ggtacagcct ttgctggcaa aactaagctg caacaccgcc agcggcctgc ccgcgcgcca
     9361 gcgcgtacgc acagcgtccc gcctgaaaaa aacgccagga cgtcttgatt tccagcgcgg
     9421 cgtgatgcaa cgcaacgccg acggtgaact tgaagtgacg accaccggac atcagggttc
     9481 acatatattt agctccttta gtctcggcaa ctgctttatc gtgctggaac gcgatcgcgg
     9541 caatgtggac gtgggcgaat gggtggaagt agaaccgttt aacgcgttgt tcggaggcct
     9601 gtaatggcgg aactcagcga tcaggagatg ctgcgctaca accggcaaat cattctgcgc
     9661 ggttttgatt ttgacggtca ggaggcgcta aaagattctc gtgtgctgat cgtcggcctc
     9721 ggtggactcg gctgcgcagc ttcgcagtat ctggcaagcg ccggtgtcgg caacctgacg
     9781 ctgctcgact tcgacacggt ttcgctctcg aatctgcaac gccagacact gcacagtgat
     9841 gccacggtcg ggcaaccgaa ggtggaatcc gcccgtgacg ccctgacgcg gatcaaccca
     9901 catatcgcga ttacgccagt caatgcactg ctagatgacg cagaacttgc agcattgatt
     9961 gctgaacacg atctggtgct cgactgtacg gataacgttg cggtacgtaa tcaactgaac
    10021 gcaggctgtt ttgccgcgaa ggtgccgctg gtttccggcg cggcaattcg tatggaaggg
    10081 caaatcacgg tcttcactta tcaggacggc gaaccgtgct atcgctgcct tagccgtttg
    10141 tttggcgaga acgcgttaac ctgcgtagaa gcaggcgtga tggcaccgtt gatcggagta
    10201 attggttcgt tgcaggcaat ggaagcgatc aaactgctgg caggttatgg caaaccggcc
    10261 agcgggaaaa tcgtcatgta cgatgcgatg acctgtcagt ttcgcgaaat gaaactgatg
    10321 cgtaatccgg ggtgtgaggt gtgcgggcag taattgccac ctccaagcca gataagacgc
    10381 ggcactccgc cacgtcatca gcaatttatg aggatgcaga acgtccggtt aaatcgacgt
    10441 tctgccaaac gctcccagcc agtcctgttc aaacttcgcc acagcggcat caaccgccgg
    10501 atagctaatc atctgttgtg ccacatccag tggcagcgta attgattcac atcctgccag
    10561 taagcagtcc agcgcctgac gcggtttttt gaaactcgct gccagcactt tcgcctgcgg
    10621 cgcatgcatt ttcaataact ggtgtaagtc ggtcacagtc tgaatgccgc taccgccctg
    10681 agcatcaata cgattaacgt aaggcgcaac atattccgca cctgccagcg ccgacagcag
    10741 cccttgtgct gcgccatata ccgcggttcc cagcgttgga atcccttccg cttttaacat
    10801 cttaatagct gccagcccct cggcggtcac cggaactttc accacgatat ccgcaataat
    10861 agaacgcaat ttacgtgcgt cattcaccat cccttcagca gtggtagcca ttacctgggc
    10921 aaacagacgc ccctgaccgc ccatcgcttc atgaagttgc ggaagcacaa catccagcgg
    10981 ttttttaccc gcggcgataa tgcttgggtt agtggtcaca cccgccagcg gaaaaatacg
    11041 tgacagcgcc ttcaccgcaa caacgtctga agtatccaga tacagttcca taaccatcct
    11101 caaaatgtac tttttgtctg aatgtagact atcacgggaa aactctctga acagttgacg
    11161 cacatcaacc caactttcat tcgaaagtat tttaatgttt gaacgaaaca gagaggcaac
    11221 tatgattttc aatattcagc gctactcgac ccatgatggc cccggtatcc gcacggtcgt
    11281 atttcttaaa ggctgttcgc tgggctgccg ctggtgtcag aacccggaaa gccgcgcccg
    11341 cacgcaggat ctgctgtatg acgcacgact gtgtctggaa ggctgcgagc tgtgcgctaa
    11401 ggcagcgccg gaagtgattg agcgcgcatt gaatggtttg cttattcatc gggaaaagtt
    11461 aaccccggag catctgacgg cgctaaccga ctgctgcccg acacaggcgt taaccgtgtg
    11521 tggggaagtg aaaagcgttg aggagatcat ggcgaccgtt ctgcgcgata aaccgtttta
    11581 cgatcgcagc ggcggcggct taacgctttc gggtggtgaa ccctttatgc agccggaaat
    11641 agcgacggcg ctactgcaag cctgccacga ggcaggcatt catactgcgg tagaaacctg
    11701 tctgcatgtg ccgtggaaat atatcgcccc ttctctgccc tatatcgatc tgtttcttgc
    11761 cgatttaaaa cacattgccg acgcgccgtt taaacagtgg accgacggta acgccgccaa
    11821 ggtgctggat aacctgaaaa aactcgccgc agcgggcaaa aaaatcatta tccgcgtgcc
    11881 gctgattcag ggctttaatg ccgacgaaac ctctgtaaaa gccattaccg attttgccgc
    11941 cgacgagctg cacgttggcg aaattcattt tctgccctac cacacgctgg gcatcaacaa
    12001 atatcactta cttaatctgc cctatgacgc cccggaaaaa ccgcttgatg cgccagacct
    12061 gctcgacttt gcccagcagt atgcctgcca gaaagggtta accgcgacct tacgaggata
    12121 acaaccatga ccacactgaa actggacacg ctcagcgacc gcattaaagc gcacaaaaat
    12181 gcgctggtgc atattgtgaa accgccggtc tgtaccgagc gcgcgcagca ctataccgag
    12241 atgtatcaac aacatctcga taagccgatc ccggtacgtc gcgcgctggc tctggcgcat
    12301 cacctggcga atcgcaccat ctggatcaag cacgatgagt tgatcatcgg caaccaggca
    12361 agcgaggttc gcgctgcgcc gatcttcccg gaatataccg tctcgtggat cgaaaaagag
    12421 attgatgatc tggcagatcg tcccggtgct ggttttgcgg tgagcgaaga gaacaaacgc
    12481 gttctgcatg aagtgtgccc gtggtggcgc ggtcagacgg tacaggatcg ctgctacggc
    12541 atgtttaccg atgagcaaaa aggtctgctg gcgaccggaa tcattaaagc ggaaggcaat
    12601 atgacctccg gcgatgcgca cctggcggtg aatttcccgc tgctgctgga aaaaggtctt
    12661 gatggtctgc gcgagaaagt agcggaacgt cgctcgcgca tcaatctgac ggtactggaa
    12721 gatttgcacg gcgaacagtt cctgaaagcg attgatatcg tgctggtggc agtcagcgaa
    12781 cacattgaac gttttgcagc cctggcgcgt gaaatggccg cgaccgaaac ccgcgaaagc
    12841 cgtcgcgatg aactgctggc gatagcagaa aactgcgatc ttatcgccca ccagccgccg
    12901 cagactttct ggcaggcgct gcaactgtgt tacttcatcc agttgatatt gcagatcgaa
    12961 tctaacggtc actcggtatc gtttggtcgt atggaccagt atctctaccc gtactatcgc
    13021 cgcgacgttg aactcaacca gacactggat cgcgaacacg ccatcgaatt gctgcatagc
    13081 tgctggctga aactgctgga agtgaacaag atccgctccg gctcacactc aaaagcctct
    13141 gcgggaagtc ctctgtatca gaacgtcacc attggcggac aaactctggt tgatggtcaa
    13201 ccaatggacg cggtgaatcc actctcttac gcgatcctcg aatcctgcgg tcgcctgcgt
    13261 tccactcagc ctaacctcag cgtgcgttac catgcaggaa tgagtaatga tttcctcgac
    13321 gcctgcgtac aggtgatccg ttgcggcttc gggatgccgg cgttcaacaa cgacgaaatc
    13381 gtgatcccgg aatttattaa actcggtatt gaaccgcagg acgcttacga ctacgtagcg
    13441 attggttgta tcgaaaccgc cgttggtggc aaatggggct atcgctgtac cggcatgagc
    13501 tttatcaact tcgcccgcgt gatgctggcg gcgctggaag gcgggcgtga tgccaccagc
    13561 ggcaacgtgt tcctgccaca agaaaaagcg ttgtcggcag gcaactttaa caatttcgat
    13621 gaagtaatgg acgcgtggga tacgcaaatc cgttattaca cgcgtaaatc aatcgaaatc
    13681 gaatatgtcg tcgacaccat gctggaagag aacgtgcacg atattctctg ctcggcgctg
    13741 gtggatgact gtattgagcg agcgaaaagt atcaagcaag gcggcgcgaa atatgactgg
    13801 gtttctggcc tgcaggttgg cattgccaac ctcggcaaca gcctggcggc agtgaagaaa
    13861 ctggtatttg aacagggcac gattggtcag caacagctgg ctgccgcact ggcggatgac
    13921 ttcgatggcc tgactcatga gcaactgcgt cagcggctga ttaacggtgc gccgaagtac
    13981 ggcaacgacg atgatactgt cgatacgctg ctggctcgcg cttatcagac ctatatcgac
    14041 gaactgaaac agtaccataa tccgcgctac ggtcgtggtc cggttggcgg caactattac
    14101 gcgggtacgt catctatctc cgctaacgta ccgtttggtg cgcaaactat ggcaacgccg
    14161 gacgggcgta aagcccacac cccgctggca gaaggcgcta gtccggcctc tggtactgac
    14221 catctcggcc ctactgcggt cattggctcg gtgggtaaac tgcctacggc agcgattctc
    14281 ggcggcgtgt tgctcaacca gaaactgaat ccggcaacgc tggagaacga atctgacaag
    14341 cagaagctga tgatcctgct gcgcaccttc ttcgaggtgc ataaaggctg gcatattcag
    14401 tacaacatcg tttcccgcga aacgctgctg gaggcgaaaa aacatccgga tcagtaccgc
    14461 gatctggtag tgcgtgtcgc gggttattcc gccttcttca ccgcgctctc tccagacgct
    14521 caggacgata tcatcgctcg tactgaacat atgctgtaat ctcttcggcc cggctgcggc
    14581 gtcgccgggc taaatcattc acatcatcaa tttcatcctt actttcattc gaaatataat
    14641 ttgtgctctg cgtcacattg ttattacact gttacggttt cattttcgag ccaggagcac
    14701 acctatgagc gtaaaagtta tcgtcacaga catggacggt acttttctta acgacgccaa
    14761 aacgtacaac caaccacgtt ttatggcgca atatcaggaa ctgaaaaagc gcggcattga
    14821 gttcgttgtc gccagcggta atcagtatta ccagcttatt tcgttctttc ctgagctaaa
    14881 ggatgagatc tcttttgtcg cggaaaacgg cgcactggtt tacgaacatg gcaagcaact
    14941 gttccacggc gaactgaccc gacatgaatc gcggattgtt attggcgagt tgctaaaaga
    15001 taagcaactc aattttgtcg cctgcggtct gcaaagtgca tatgtcagcg aaaatgcccc
    15061 cgaagcattt gtcgcactga tggcaaaaca ctaccatcgc ctgaaagctg taaaagatta
    15121 tcaggagatt gacgacgtac tgttcaagtt ttcgctcaac ctgccagatg aacaaatccc
    15181 gttagtgatc gacaaactgc acatagcgtt cgatggcatt atgaaacccg tcaccagtgg
    15241 ttttggcttt atcgacctga ttattcccgg tctacataaa gcaaacggta tttcgcggtt
    15301 actgaaacgc tgggatctgt caccgcaaaa tgtggtagcg attggcgaca gcggtaacga
    15361 tgcggagatg ctgaaaatgg cgcgttattc ctttgcgatg ggcaatgctg cggaaaacat
    15421 taaacaaatc gcccgttacg ctaccgatga taataatcat gaaggcgcgc tgaatgtgat
    15481 tcaggcggtg ctggataaca catccccttt taacagctga cctctctacc ggagccgtgc
    15541 gctccggttt tcccttcttt ttacatcctg tacatcacat caaatcatta aacttgcatt
    15601 aacttattta taacttatat tgtcacatac aaatcataat ggtttcgaat gaaagttaat
    15661 gagaggtggt tatggcttct acttttacca gcgacacatt gccagccgat cacaaagcag
    15721 ctatccgtca gatgaagcac gcgctgcggg cgcagcttgg cgacgtccag cagatcttta
    15781 atcagctaag cgatgacatt gccacgcgag tggctgaaat caacgcactc aaagcacagg
    15841 gcgatgccgt ctggccggtg ctgtcttatg ccgatatcaa agcaggtcat gttactgcag
    15901 agcagcgcga acagattaaa cgtcgcggtt gtgcggtgat aaaaggccat ttcccccgcg
    15961 aacaagcgct aggctgggat cagtcgatgc tggactatct ggaccgcaac cgctttgacg
    16021 aggtctacaa aggccccggc gataatttct tcgggacgct cagcgcttca cgtcccgaga
    16081 tttaccccat ctactggtcg cagacgcaaa tgcaggcccg ccagagtgaa gaaatggcga
    16141 atgcgcagtc gtttctcaat cgtctgtgga catttgaaag tgatggaaag caatggttta
    16201 acccggatat gagcgtcatc taccctgacc gtatccgccg ccgtccgccc ggaacgacct
    16261 ccaaaggtct tggagcgcat accgactccg gggcgctgga acgctggctg cttccagcgt
    16321 atcagcgcgt tttcgccaac gtctttaatg gcaatctggc gcaatatgat ccctggcatg
    16381 cggcacatcg tacggaagtt gaagagtaca cggtggacaa caccaccaaa tgttccgtgt
    16441 ttcggacatt ccagggctgg acagcgctct ctgatatgct gcctggtcag gggttgctgc
    16501 acgttgtgcc cattcctgaa gccatggcgt acgtactgtt acgtacgctg cttgatgatg
    16561 tgccggagga tgaactgtgc ggcgtagcgc ccggaagagt gttgccggta tcagagcaat
    16621 ggcatccact gttaattgag gcgttaacca gcattccaaa actcgaggcc ggagactccg
    16681 tctggtggca ctgcgacgtc atccattccg ttgcccccgt tgaaaatcaa cagggttggg
    16741 gcaacgtgat gtacattcct gcggcaccga tgtgcaagaa aaatcttgcc tacgcgcaca
    16801 aggtgaaggc cgcactggaa aaaggcgcat cgccgggcga cttcccgcgc gaggactatg
    16861 aaacaaactg ggaaggacgc tttacgcttg ccgacctcaa cattcacggt aagcgagcgt
    16921 tgggcatgga tgtttgagag ttaatggaag tgaattgatg tgggattaag aaaatcgatt
    16981 cgacgttact cagattgctg acaagtgcgc tttcttaatg cctgatgcgg cgttaacgcc
    17041 ttatctggcc tacaaagtcc tgcagattca atatattaca ggtactgcgt aggcctgata
    17101 agcgtagcgc atcaggctat tttgcatttg tcatcagccg ccgtcacccc gacagtatcg
    17161 gggtgacgga taatcactta ctcgatccct ttactacgca ggtaatcttc gtaattaccg
    17221 ctaaagtcga tcacgcgttc cggggtgatt tccagaatgc gggtcgccag ggagcttacg
    17281 aactcacggt cgtgtgaaac aaagatcagc gtgccctgat acagttccag cgccatgttc
    17341 agtgactcga tggattccat atccaggtgg ttggtcggtt cgtccatgat cagaatgttc
    17401 ggcttctgca tcattaactt accaaacagc atccgccctt tttccccacc ggaaagcact
    17461 ttagctggct ttttgatgtc gtcctggctg aacagcaaac gaccgagaat gctgcgtacc
    17521 gcctgctcgt catcgccttc ctgcttccac tgactcatcc attcgaacac ggtcagatca
    17581 ttttcaaact catattcgtg gtcctgggcg tagtaaccaa tgcgcgcgtt ttcagaccat
    17641 tttacggtgc cgctgtccgg ttgcagatcg cccaccagcg ttttcatcag cgttgattta
    17701 ccgacgccgt tggtacccag taccgcaagt ttttcaccga cctccagcag caggttgaga
    17761 tttttaaaca gtggaccgtt atcaaaccct ttggtcagac cttccacttc cagcgcgtta
    17821 cggaacagtt tcttatcctg ttcaaaacgg atgaacgggt tctgacggct ggaggctttc
    17881 acctcttcca gtttgatttt atcaatctgg cgcgcgcgcg aagttgcctg gcgagatttc
    17941 gaggcgttgg cgctaaagcg gctaacgaaa gattgcaact cagcaatctg cgctttcttc
    18001 ttggcgttat cggccagcag acgttcacgc gcctgggtcg ccgccgtcat gtactcatcg
    18061 tagttacccg gataaacgcg cagctcgccg taatccagat ccgccatgtg ggtacagacc
    18121 atgttaagga agtgacggtc gtgcgagatg atgatcatgg tgctgtcacg ctcgttcagc
    18181 acctgttcca gccagcgaat ggtgtcgatg tcgaggttgt tggtcggttc gtcgagcagg
    18241 agaatatccg gatcagcaaa cagcgcctgc gccagaagca cacgcagctt ccagccagga
    18301 gcaacttcac tcatcgggcc gtagtgctgt tccactggaa ttcccacgcc aagcaacaat
    18361 tcaccggcgc gagcttccgc agagtaaccg tccatttcgc cgtatttaac ttccagatcg
    18421 gccactttat agccgtcttc ctcactcatt tccggcaaag catagatgcg gtcacgctcc
    18481 tgcttcactt cccacaactc tttatgcccc atgatcaccg tatccagcac agtgaactct
    18541 tcaaaggcaa actgatcctg acgcagctta ccaatgcgct cgttgggatc gagggaaacg
    18601 ttacccaaag tcggctctaa gtcgccgccg aggatcttca taaaggtgga tttaccacta
    18661 ccgttcgcgc caatcaggcc gtaacggttg ccgccgccaa atttgacgga aatgttttca
    18721 aacaacggct tactgccgaa ctgcatggtg acgttactgg aaactaacac aggcgtatcc
    18781 tgaaaagaga tatgacaaac cgcgcattat gccataagtc tgaaagaaga tcctgctcct
    18841 cgcttaaggt ctacactcaa gccaaaggca aaaaatgtga tttcgtacac atctgatttc
    18901 actgtgagct ggaatgaact tataatgcgc ttccaatact ctaatattct caacccaatg
    18961 gcctgccagg cacaaaatct cgcttaacat gaatatgaaa ttgaaaacat tattcgcagc
    19021 ggccttcgct gttgtcggct tttgcagtac cgcctctgcg gtaacttatc ctctgccaac
    19081 cgacgggagt cgcctggttg gtcagaatca ggtgatcacc attcctgaag gtaacactca
    19141 gccgctggag tattttgccg cggagtacca gatggggctt tccaatatga tggaagcgaa
    19201 cccgggtgtg gataccttcc tgccgaaagg cggtactgta ctgaacattc cgcagcagct
    19261 gatcctgccg gataccgttc atgaaggcat cgtcattaac agtgcagaga tgcgtctgta
    19321 ttactatccg aaagggacca acaccgttat cgtgctgccg atcggcattg gtcagttagg
    19381 caaagatacg cctatcaact ggaccaccaa agttgagcgt aagaaagcag gcccgacctg
    19441 gacgccgacc gccaaaatgc acgcagagta ccgcgctgcg ggcgaaccgc ttccggctgt
    19501 cgttccggca ggtccggata acccgatggg tctgtatgca ctctacatcg gtcgcctgta
    19561 tgctatccat ggcaccaacg ccaacttcgg tatcggcctg cgtgtaagtc atggttgtgt
    19621 gcgtctgcgt aacgaagaca tcaaattcct gttcgagaaa gtaccggtcg gtacccgcgt
    19681 acagtttatt gatgagccgg taaaagcgac caccgagcca gacggcagcc gttatattga
    19741 agtccataac ccgctgtcta ccaccgaagc ccagtttgaa ggtcaggaaa ttgtgccaat
    19801 taccctgacg aagagcgtgc agacagtgac cggtcagcca gatgttgacc aggttgttct
    19861 tgatgaagcg attaaaaacc gctccgggat gccggttcgt ctgaattaat cttcaaaact
    19921 taaagcaaaa ggcggactca taatccgcct tttttatttg ccagacccta gttggccggg
    19981 agtataacta acaaaacata tcccaccaac gccgcccaca acagcatcgg tattgaatag
    20041 agatggaaac gccaccagat gcggcgatcg ttcgccatac gtagcgcaat caaacttgcc
    20101 agcgatccgg gtaataaccc aaagccacct acgtttaccg cccatgccag taataaagac
    20161 ggcggcacat agttcagcaa caatatggta ctcggcacgt tactgatcac ctgcgataaa
    20221 ccgattgccg ttaaccataa cccgggttca gatagatgac tcacgttacc caacacgcct
    20281 tgcaacgctg gaagctgggt cagtaaatgg acgtcgataa acatcgccat aaacaccagc
    20341 agcagcgtcc agtccacact gagcaccacg cgacgtgcca gcagcgcaaa gcctgccgcc
    20401 acaatcacca gtccccacag ctcttgtttg aactccagcg ccgttagaaa gacgatatac
    20461 agccccagac aactccacac cagccgcggt ttccactccg gtgtttgcac ccccgtatgg
    20521 tattgcagca cctttccagg gaaacaacac cagcacagga gcaggagcgt cagcatcatt
    20581 gcgccagcca gcggtgccat ttgggcaata aatccggcaa acgaaagacc agaacgtccc
    20641 cagataagaa tattttgcgg gttgccaatt ggcgtcagta gcgaaccagc attgactgcc
    20701 agcgcctcaa aaataatcag ccgattaacc gggatctcac acagtctttt tagcgtgata
    20761 gtcagcggaa caacaataaa cagcgcgaca tcgttggtca gaaaggtaga aagcagcgcc
    20821 gccgccagca ccataaacat cgccagccga cgctccgtag caaagcggcg caccattttg
    20881 cgccccagca catcaaaata accgcttaac tccacacctt tggtcagcag catcaggccg
    20941 cttaaggtga tgatggtgtg ccagtcgata gcagcaggcc aggatttcgg tgcaaagggc
    21001 acgaaaaagc ttaatccgat accaacaaga attaataact gaaaaaaacg atcgccttgc
    21061 agcgtgcgta aaaaaggcag gctcatttgg caccgtgttt ctgggtaaac aaacgaaaag
    21121 cgtcgagcgt ctcttcacta acatggtgct ccatgccttc cgcgtcgcga cgggcgattt
    21181 ccggactgac gcccaacacc aacaagaaat tttcgactat ctgatgtcgc tcgcggcttt
    21241 cctgcgccag cttctctcct tctgccgtta aaaacacgcc acgccagggg atcatttcaa
    21301 tcagccccat ggttgccagc cgcttaagca ttttagccac cgtcggttgc gaaactccca
    21361 gacgagcagc catgtccacc tgacgagctt cccccacttc cctgatcaag tcagaaatca
    21421 gctcaacgta atcatcaata agctcgcgcc gatgcgcctc tctgacctgg cggaaccctt
    21481 caacgtgctc ttccacgttc actaactgcg tcactttttt tgctgttggc gtacctgcgc
    21541 gacgactcat tgtgcttcct cattatggtg acgcatacat agcgttctca tttcgtgcgc
    21601 acattgtaaa ccagagttgc gaaggtacaa aaaattaacg ttttagcaat agctatataa
    21661 tatagcctgt gctatatctg tatgtaatgc aatcatccct caaggatcga cgggattagc
    21721 aagtcaggag gtcttatgaa tgagttcaag aggtgtatgc gcgtgtttag tcattctccc
    21781 tttaaagtac ggttaatact gctctctatg ttgtgcgata tggtcaacaa caaaccgcag
    21841 caagataaac cttccgataa atagcggcgt cgcggtacgc cgcttcactc ctgctttcat
    21901 gcaggcataa cgcgttttgg tctgaaaaaa cccacttttt gtcggatttg caatcccctt
    21961 cgcaaaagat ttgttcgtca gtagttgacc tgaacggcgg ctcgctctat cttcttgcag
    22021 ccctgcgtat attgcggctc gcggatgcgg acccctttcc actcttcacg cactcttgca
    22081 ggtattgacc cttgacgcca gggtaagcac atggcgtttg ttacgatagt ggcatatgaa
    22141 tttaaccctc aaagaatcgc ttgttacccg tagccgggta tttagcccgt ggactgcgtt
    22201 ctacttttta cagtcgctat taattaacct cggcttaggt taccccttca gtttgctcta
    22261 caccgctgcg tttacggcta ttttgctttt gctatggcga acattgcctc gcgtacaaaa
    22321 agttctggtc ggtgtcagtt cgctggtggc ggcttgttat ttcccttttg ctcaggccta
    22381 cggcgcgcct aatttcaata cattgctggc attgcactcc accaatatgg aagagtcgac
    22441 cgaaatcctg acgatttttc cgtggtacag ctacctggtc ggcttattta tttttgcgct
    22501 cggcgtaata gcaatcaggc gaaaaaaaga gaatgaaaaa gcgcgctgga ataccttcga
    22561 cagcctgtgt ctggtattca gtgtggcgac attttttgtt gctcccgtgc aaaacctggc
    22621 ctggggtggc gtatttaaac tgaaagatac tggctatccg gtatttcgtt ttgctaagga
    22681 tgtcatcgtc aataataacg aggtgattga agagcaagaa cggatggcaa aactttccgg
    22741 aatgaaagat acctggacgg tcactgccgt taagccgaag tatcagacct atgtggtggt
    22801 gatcggtgaa agcgcgcgtc gcgatgccct cggtgccttt ggcggtcact gggacaatac
    22861 cccgtttgcc agcagcgtta acggtttgat atttgctgac tacattgccg ccagtggctc
    22921 cacgcagaaa tcgcttggct taacgctcaa tcgcgtagtc gatggcaaac cacagtttca
    22981 ggataacttt gtcaccctgg caaatcgcgc gggcttccag acctggtggt tttccaacca
    23041 gggccaaatc ggcgaatacg atactgctat cgccagcatc gccaaacgtg cagatgaagt
    23101 gtacttcctg aaagaaggta attttgaagc agataaaaac acgaaagacg aagcgttact
    23161 ggatatgacc gctcaagtgc tggcgcaaga gcactcgcaa ccgcagctga ttgttctgca
    23221 tctgatgggc tcgcatccgc aggcctgcga caggacacaa ggcaaatacg aaacctttgt
    23281 gcaatcgaaa gaaacgtcgt gctatctcta taccatgacg caaacggacg atttactgcg
    23341 caagctgtac gatcagttac gcaacagcgg cagcagcttc tctctggttt acttttctga
    23401 ccacggtctg gcctttaaag agcgcggcaa agacgtgcaa taccttgccc atgatgataa
    23461 atatcagcaa aatttccagg tgccttttat ggtcatttcc agcgacgata aagcgcatcg
    23521 ggtgattaaa gcccgccgct cagccaatga cttcttaggc tttttctcgc agtggacggg
    23581 aattaaagcg aaggaaataa atatcaaata cccgtttata tctgagaaga aagccgggcc
    23641 gatatacatc accaacttcc agttacagaa ggtggattac aaccatctcg gaaccgatat
    23701 tttcgacccg aaaccttaaa aacaaaaatc cgccccgaga ggcggatttt ttatatcacc
    23761 aaagtgatta gaagcggtaa ccaacaccgg caatccaggt gcctacgtca acgctacgaa
    23821 tacggctctg ctcgtaagag aagtccagag caacgttttc catcgggttg aactgcagac
    23881 cagcaccgta ggagaaaccg tagtcgctgg tgtcgtgttt gtaggtcggg tattcagtgg
    23941 tctggaattt accataaccc acacccacta caccgtagat gcttgcccag tcgttaatgc
    24001 ggtaagccgg accagcagtg atgccgtagt actggttttt gttgtagtca ccagagcttg
    24061 cagtacgact tttctcggtg taagtgaaag aaccgatcac acccagcggg ctgttgtctt
    24121 cttcatagcg gtatttcagg ttgaaaccgc ccattttgtt catttggccc tgagcgtcgc
    24181 tctgtgcgta accgccagtt acggtagaag tcgcagctac ggaagtacct gcggtgaaag
    24241 ccagaactgc ggccagtgct gaaagacatg caattttttt cataaccacc tcaaatgtga
    24301 ttcaaataag tcctaagttt taaatatatc aaaaattaat gggaaactct tcgcgatttg
    24361 tgatgtctaa cgggccattt catgtaacag aacgtttcca tacaccgcta tccatctaaa
    24421 tttaaatcac tttttcagag aactgcgtaa gtattacgca tgttttccct gtcattcatc
    24481 cagattattc ctaatcacca gactaatgat tccatcaatc ctggcgcatt ttagtcaaaa
    24541 cgggggaaaa ttttttcaac aaatgctcaa ccagcattgg gtatatccag tacactccac
    24601 gctttactta agtctagata tttgtgggag aaaggatgcc tggttcatta cgtaaaatgc
    24661 cggtctggtt accaatagtc atattgctcg ttgccatggc gtctattcag ggtggagcct
    24721 cgttagctaa gtcacttttt cctctggtgg gcgcaccggg tgtcactgcg ctgcgtctgg
    24781 cattaggaac gctgatcctc atcgcgttct ttaagccatg gcgactgcgc tttgccaaag
    24841 agcaacggtt accgctgttg ttttacggcg tttcgctggg tgggatgaat tatctttttt
    24901 atctttctat tcagacagta ccgctgggta ttgcggtggc gctggagttc accggaccac
    24961 tggcggtggc gctgttctct tctcgtcgcc cggtagattt cgtctgggtt gtgctggcgg
    25021 ttcttggtct gtggttcctg ctaccgctgg ggcaagacgt ttcccatgtc gatttaaccg
    25081 gctgtgcgct ggcactgggg gccggggctt gttgggctat ttacatttta agtgggcaac
    25141 gcgcaggagc ggaacatggc cctgcgacgg tggcaattgg ttcgttgatt gcagcgttaa
    25201 ttttcgtgcc aattggagcg cttcaggctg gtgaagcact ctggcactgg tcggttattc
    25261 cattgggtct ggctgtcgct attctctcga ccgctctgcc ttattcgctg gaaatgattg
    25321 ccctcacccg tttgccaaca cggacatttg gtacgctgat gagcatggaa ccggcgctgg
    25381 ctgccgtttc cgggatgatt ttcctcggag aaacactgac acccatacag ctgctggcgc
    25441 tcggcgctat catcgccgct tcaatggggt ctacgctgac agtacgcaaa gagagcaaaa
    25501 taaaagaatt agacattaat taaatttaca tttctgcatg gttatgcata accatgcaga
    25561 atttatcgct acttttcctc tacaccgtct ttatatatcg aattatgcaa aagcatattt
    25621 attccgaaaa ttcctggcga gcagataaat aagaattgtt cttatcaata tatctaactc
    25681 attgaatctt tattagtttt gtttttcacg cttgttacca ctattagtgt gataggaaca
    25741 gccagaatag cggaacacat agccggtgct atacttagtc tcgttaatta ctgggacata
    25801 acatcaagag gatatgaaat tatgagtacc gctaaattag ttaaatcaaa agcgaccaat
    25861 ctgctttata cccgcaacga tgtctccgac agcgagaaaa aagcaacagt agagttgctg
    25921 aatcgccagg ttatccagtt tattgatctt tctttgatta ccaaacaagc gcactggaac
    25981 atgcgcggcg ctaacttcat tgccgtacat gaaatgctgg atggcttccg caccgcactg
    26041 atcgatcatc tggataccat ggcagaacgt gcagtgcagc tgggcggtgt agctctgggg
    26101 accactcaag ttatcaacag caaaaccccg ctgaaaagtt acccgctgga catccacaac
    26161 gttcaggatc acctgaaaga actggctgac cgttacgcaa tcgtcgctaa tgacgtacgc
    26221 aaagcgattg gcgaagcgaa agatgacgac accgcagata tcctgaccgc cgcgtctcgc
    26281 gacctggata aattcctgtg gtttatcgag tctaacatcg aataaatcca tcgctgatgg
    26341 tgcagaactt tagtacccga taaaagcggc ttcctgacag gaggccgttt tgttttgcag
    26401 cccacctcaa cgcacttatt tagtgcatcc atctgctatc tccagctgat taagtaaatt
    26461 ttttgtatcc acatcatcac acaatcgtta cataaagatt gttttttcat caggttttac
    26521 gctaaataat cactgtgttg agtgcacaat tttagcgcac cagattggtg ccccagaatg
    26581 gtgcatcttc agggtattgc cctataaatc gtgcatcacg tttttgccgc atctctaaaa
    26641 atcaatgagt tgcaaaactg gcacgatttt ttcatatatg tgaatgtcac gcaggggatc
    26701 gtcccgtgga tagaaaaaag gaaatgctat gaagtctgta ttaaaagttt cactggctgc
    26761 actgaccctg gtttttgcgg tttcttctca tgccgcggat aaaaaattag ttgtcgcgac
    26821 ggataccgcc ttcgttccgt ttgaatttaa acagggcgat aaatatgtgg gctttgacgt
    26881 tgatctgtgg gctgccatcg ctaaagagct gaagctggat tacgaactga agccgatgga
    26941 tttcagtggg atcattccgg cactgcaaac caaaaacgtc gatctggcgc tggcgggcat
    27001 taccatcacc gacgagcgta aaaaagcgat cgatttctct gacggctact acaaaagcgg
    27061 cctgttagtg atggtgaaag ctaacaataa cgatgtgaaa agcgtgaaag atctcgacgg
    27121 gaaagtggtt gctgtgaaga gcggtactgg ctccgttgat tacgcgaaag caaacatcaa
    27181 aactaaagat ctgcgtcagt tcccgaacat cgataacgcc tatatggaac tgggcaccaa
    27241 ccgcgcagac gccgttctgc acgatacgcc aaacattctg tacttcatca aaaccgccgg
    27301 taacggtcag ttcaaagcgg taggtgactc tctggaagcg cagcaatacg gtattgcgtt
    27361 cccgaaaggt agcgacgagc tgcgtgacaa agtcaacggc gcgttgaaaa ccctgcgcga
    27421 gaacggaact tacaacgaaa tctacaaaaa atggttcggt actgaaccga aataataacg
    27481 ctacacctgt aaagcgcact ggcagttccc tctcccctct ggggagagga ttagggtgag
    27541 gggcgcaaac ccgctccggg gccattaatt accctgaatt tgattattta caccacggta
    27601 acaggaacaa catatgcagt ttgactggag tgccatctgg cctgccattc cgcttctgat
    27661 tgaaggtgcc aaaatgaccc tgtggatttc ggtcctcggt ctggctggcg gtctggtaat
    27721 cggattgctg gcaggttttg cacgcacctt cggtggttgg atagccaacc acgtcgcgct
    27781 ggtctttatt gaagtgatcc gcggcacacc tatcgtcgtc caggtgatgt ttatctattt
    27841 cgccctgccg atggcgttta acgacttacg catcgaccca tttactgcgg cggtggtcac
    27901 catcatgatc aactccggcg cgtacattgc ggaaatcacg cgtggtgcgg tgctgtctat
    27961 tcacaaaggt tttcgtgaag caggactggc gctcggtctt tcacgttggg aaaccattcg
    28021 ctacatcatt ttaccgctgg cactgcgtcg tatgctgccg ccgctgggta accagtggat
    28081 catcagcatt aaagacacct cgctgtttat tgttatcggc gtggcggaac tgacccgtca
    28141 ggggcaagaa attattgccg gtaacttccg cgcccttgag atctggagcg ccgtggcggt
    28201 gttctatctg attattaccc tggtgctgag ctttattctg cgtcgtctgg aaagaaggat
    28261 gaaaatcctg tgattgaatt taaaaacgtc tccaagcact ttggcccaac ccaggtgctg
    28321 cacaatatcg atttgaacat tgcccagggc gaagtcgtgg tgattatcgg gccgtccggt
    28381 tccggtaaat cgaccctgct gcgctgcatc aacaaactgg aagaaatcac ctccggcgat
    28441 ctgattgtcg atggcctgaa ggttaacgat ccgaaagttg acgagcgcct gattcgccag
    28501 gaagcaggta tggtgttcca gcagttttac ctcttcccgc atctgacggc gctggaaaac
    28561 gtcatgtttg gtccgctacg cgtgcgtggc gcgaacaaag aagaggcgga aaaactggcg
    28621 cgtgagctgc tggcgaaagt cggtctggca gaacgtgcac atcactaccc ttccgaactt
    28681 tctggtggtc aacagcagcg tgtggcgatt gcccgcgcgc tggcggtgaa gccgaaaatg
    28741 atgctgtttg atgaaccgac ttccgctctt gacccggaac tgcgccatga agtgctgaag
    28801 gttatgcagg atctggctga agaagggatg acgatggtga tcgtgaccca cgaaatcggt
    28861 tttgccgaga aagtagcttc gcggctgatc tttatcgaca aaggccggat tgcggaagat
    28921 ggcaatccgc aggtgttgat caagaacccg ccgagccagc gcttgcagga atttttgcag
    28981 cacgtctctt aataagacac attgcctgat gcgctacgct tatcaggcct acaggatatc
    29041 tggcaactta ttaaaattgc atgaacttgt aggacggata aggcgttcac gccgcatccg
    29101 gcaaaaaagc ccgcacgttg tcagcaatct gcttaatatc ccttcctccc tttcacccga
    29161 aagggaggca caccagattc ctctcattta aa
//
LOCUS       DAJVUN010000036        29140 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.036, whole genome shotgun sequence.
ACCESSION   DAJVUN010000036 DAJVUN010000000
VERSION     DAJVUN010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29140
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.036"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..156
                     /locus_tag="OQQ76_001270"
     CDS             <1..156
                     /locus_tag="OQQ76_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2135 domain-containing protein"
                     /protein_id="HCS1967832.1"
                     /translation="INYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELT
                     LVKSFDW"
     gene            431..3280
                     /gene="rcsC"
                     /locus_tag="OQQ76_001271"
     CDS             431..3280
                     /gene="rcsC"
                     /locus_tag="OQQ76_001271"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416722.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RcsC"
                     /protein_id="HCS1967833.1"
                     /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR
                     ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF
                     EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL
                     RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGIGYFYALTPVYLANR
                     LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSW
                     FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVRERIRMLILNAILLNVLAGAALFTLA
                     RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN
                     MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV
                     KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV
                     TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
                     LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT
                     GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS
                     QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE
                     PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI
                     YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND
                     GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC
                     LESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES"
     gene            complement(3366..4016)
                     /gene="rcsB"
                     /locus_tag="OQQ76_001272"
     CDS             complement(3366..4016)
                     /gene="rcsB"
                     /locus_tag="OQQ76_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsB"
                     /protein_id="HCS1967834.1"
                     /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN
                     LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD
                     IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR
                     LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD"
     gene            complement(4033..6693)
                     /gene="rcsD"
                     /locus_tag="OQQ76_001273"
     CDS             complement(4033..6693)
                     /gene="rcsD"
                     /locus_tag="OQQ76_001273"
                     /EC_number="2.7.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase RcsD"
                     /protein_id="HCS1967835.1"
                     /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA
                     WLKDKSYQIVDITHAIQKRVNTWRYVTWQIYDNIAATTSPSSGEGFLKQDVYYLEKPR
                     RKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLK
                     DLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTTFNQP
                     GHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGDNDNEKEGTDSVSIHFNSTKIE
                     ISSALNSTDVRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRST
                     ESLPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQN
                     ITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQAQRL
                     YEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDEIQLA
                     NMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGDRDAL
                     RRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLHFPFI
                     NQPQNDRYSKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPEVEEE
                     EERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLT
                     ASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLGGDEN
                     AQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLC
                     ETLEHLIREKDVPGIEKYISDIDSYVKSLL"
     gene            7431..8561
                     /gene="ompC"
                     /locus_tag="OQQ76_001274"
     CDS             7431..8561
                     /gene="ompC"
                     /locus_tag="OQQ76_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpC"
                     /protein_id="HCS1967836.1"
                     /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGL
                     KFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
                     LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSS
                     KRTDDQNGSYISNGVVRNYIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSL
                     GWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINGRNYDDEDILKYVDVGATY
                     YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF"
     gene            8673..9728
                     /gene="apbE"
                     /locus_tag="OQQ76_001275"
     CDS             8673..9728
                     /gene="apbE"
                     /locus_tag="OQQ76_001275"
                     /EC_number="2.7.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase ApbE"
                     /protein_id="HCS1967837.1"
                     /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT
                     FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA
                     MAEIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDEMKAKTGLQH
                     LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR
                     GMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ
                     TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF
                     KTWMSPQFKSFLVSEKN"
     gene            9802..10866
                     /gene="ada"
                     /locus_tag="OQQ76_001276"
     CDS             9802..10866
                     /gene="ada"
                     /locus_tag="OQQ76_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HCS1967838.1"
                     /translation="MKNATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA
                     RHALRENVSFYANASEALAAGFRPCKRCQPDKANAQQHRLDKITHACRLLEQETPVTL
                     EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP
                     DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCALGRCLVAESERGICAILLGDD
                     DATLISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW
                     QALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGTLSGY
                     RWGVSRKAQLLRREAENEER"
     gene            10866..11516
                     /gene="alkB"
                     /locus_tag="OQQ76_001277"
     CDS             10866..11516
                     /gene="alkB"
                     /locus_tag="OQQ76_001277"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HCS1967839.1"
                     /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS
                     PFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHDLCQR
                     AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK
                     RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTTDCRYNLTFRQAGKKE"
     gene            11592..13235
                     /gene="yojI"
                     /locus_tag="OQQ76_001278"
     CDS             11592..13235
                     /gene="yojI"
                     /locus_tag="OQQ76_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin J25 efflux ABC transporter YojI"
                     /protein_id="HCS1967840.1"
                     /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIEMA
                     DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL
                     GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT
                     IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA
                     QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR
                     TPLLSAVGALPTLLTAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFSYQD
                     NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP
                     EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL
                     SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH
                     DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA"
     gene            13453..15099
                     /gene="mqo"
                     /locus_tag="OQQ76_001279"
     CDS             13453..15099
                     /gene="mqo"
                     /locus_tag="OQQ76_001279"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HCS1967841.1"
                     /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA
                     TLGTYLRELEPEWSMTMLERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI
                     EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL
                     QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS
                     LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL
                     QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD
                     GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML
                     SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDADKGGVLRLGTEVVSDQQGTIA
                     ALLGASPGASTAAPIMLDLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE
                     LQYTSEVLGLKYDKPQAADSTPKPQLKPQPVQKEVADIAL"
     gene            complement(15249..15737)
                     /gene="eco"
                     /locus_tag="OQQ76_001280"
     CDS             complement(15249..15737)
                     /gene="eco"
                     /locus_tag="OQQ76_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease inhibitor ecotin"
                     /protein_id="HCS1967842.1"
                     /translation="MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQV
                     IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLESKTLEGWGYDYYVFDKVSSPVS
                     TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAE
                     VR"
     gene            complement(15872..16036)
                     /locus_tag="OQQ76_001281"
     CDS             complement(15872..16036)
                     /locus_tag="OQQ76_001281"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967843.1"
                     /translation="MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKHIYIAINSPEI
                     FLLVCSLIRI"
     gene            16145..16639
                     /gene="napF"
                     /locus_tag="OQQ76_001282"
     CDS             16145..16639
                     /gene="napF"
                     /locus_tag="OQQ76_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HCS1967844.1"
                     /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI
                     NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSLRHTRAWDLQFTIGDAC
                     LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY
                     LHAH"
     gene            16629..16892
                     /gene="napD"
                     /locus_tag="OQQ76_001283"
     CDS             16629..16892
                     /gene="napD"
                     /locus_tag="OQQ76_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HCS1967845.1"
                     /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL
                     IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP"
     gene            16889..19375
                     /gene="napA"
                     /locus_tag="OQQ76_001284"
     CDS             16889..19375
                     /gene="napA"
                     /locus_tag="OQQ76_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HCS1967846.1"
                     /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA
                     PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL
                     RMKNGKYDKEGEFTLITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS
                     KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE
                     MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII
                     QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA
                     EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL
                     LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS
                     GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS
                     DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS
                     RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY
                     LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE
                     GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA
                     FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA
                     QLVNKLTLDATDPLSKETDFKKCAVKLEKV"
     gene            19382..20077
                     /gene="napG"
                     /locus_tag="OQQ76_001285"
     CDS             19382..20077
                     /gene="napG"
                     /locus_tag="OQQ76_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HCS1967847.1"
                     /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV
                     RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC
                     EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA
                     ITLELERNTRTGKHARFLPTVHRDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH
                     YRFGWLEGNNGKS"
     gene            20064..20927
                     /gene="napH"
                     /locus_tag="OQQ76_001286"
     CDS             20064..20927
                     /gene="napH"
                     /locus_tag="OQQ76_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HCS1967848.1"
                     /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW
                     FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR
                     LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILLGSALTGTLIWEWI
                     NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV
                     AATDRQKCNRCMDCFHVCPEPRVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT
                     ITTRWSSGAKS"
     gene            20924..21373
                     /gene="napB"
                     /locus_tag="OQQ76_001287"
     CDS             20924..21373
                     /gene="napB"
                     /locus_tag="OQQ76_001287"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HCS1967849.1"
                     /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE
                     GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP
                     THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK"
     gene            21383..21985
                     /gene="napC"
                     /locus_tag="OQQ76_001288"
     CDS             21383..21985
                     /gene="napC"
                     /locus_tag="OQQ76_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type protein NapC"
                     /protein_id="HCS1967850.1"
                     /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF
                     NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR
                     KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA
                     QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF"
     gene            22004..22621
                     /gene="ccmA"
                     /locus_tag="OQQ76_001289"
     CDS             22004..22621
                     /gene="ccmA"
                     /locus_tag="OQQ76_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HCS1967851.1"
                     /translation="MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLL
                     RLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDG
                     DTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVN
                     GVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA"
     gene            22618..23280
                     /gene="ccmB"
                     /locus_tag="OQQ76_001290"
     CDS             22618..23280
                     /gene="ccmB"
                     /locus_tag="OQQ76_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HCS1967852.1"
                     /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ
                     LLARIAPGIIWVAALLSSLLAQERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM
                     VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL
                     LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS
                     IQ"
     gene            23322..24059
                     /gene="ccmC"
                     /locus_tag="OQQ76_001291"
     CDS             23322..24059
                     /gene="ccmC"
                     /locus_tag="OQQ76_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmC"
                     /protein_id="HCS1967853.1"
                     /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA
                     PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV
                     FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG
                     ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL
                     MRMRNLILLMEKRRPWVSELILKRGRK"
     gene            24056..24265
                     /gene="ccmD"
                     /locus_tag="OQQ76_001292"
     CDS             24056..24265
                     /gene="ccmD"
                     /locus_tag="OQQ76_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HCS1967854.1"
                     /translation="MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR
                     AILCGVEQQRAREARLRAAQQQEAA"
     gene            24262..24741
                     /gene="ccmE"
                     /locus_tag="OQQ76_001293"
     CDS             24262..24741
                     /gene="ccmE"
                     /locus_tag="OQQ76_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HCS1967855.1"
                     /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL
                     YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL
                     FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS"
     gene            24738..26681
                     /gene="ccmF"
                     /locus_tag="OQQ76_001294"
     CDS             24738..26681
                     /gene="ccmF"
                     /locus_tag="OQQ76_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis heme lyase CcmF"
                     /protein_id="HCS1967856.1"
                     /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW
                     LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL
                     MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD
                     LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF
                     LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT
                     LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG
                     HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN
                     TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA
                     MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS
                     VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTREGKPETVLYAEKRY
                     YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG
                     LLCLFDPRYRKRVSPQKTAPEAV"
     gene            26678..27235
                     /gene="dsbE"
                     /locus_tag="OQQ76_001295"
     CDS             26678..27235
                     /gene="dsbE"
                     /locus_tag="OQQ76_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbE"
                     /protein_id="HCS1967857.1"
                     /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP
                     VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG
                     MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA
                     GDLNPRVWEEEIKPLWEKYSKEAAQ"
     gene            27232..28284
                     /gene="ccmH"
                     /locus_tag="OQQ76_001296"
     CDS             27232..28284
                     /gene="ccmH"
                     /locus_tag="OQQ76_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis thiol:disulfide
                     oxidoreductase CcmH"
                     /protein_id="HCS1967858.1"
                     /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP
                     KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV
                     LLWVLPVVAIGIGGWVIYARSRRRVRVVPDAFPEQSVPEGKRAGYIVYLPGIVVALIV
                     AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN
                     PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR
                     LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLSANDTRRAVIE
                     RSIAQAMQHLSPQESK"
     gene            complement(28319..28966)
                     /gene="narP"
                     /locus_tag="OQQ76_001297"
     CDS             complement(28319..28966)
                     /gene="narP"
                     /locus_tag="OQQ76_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite response regulator protein NarP"
                     /protein_id="HCS1967859.1"
                     /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASA
                     IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG
                     ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD
                     VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ"
BASE COUNT         6653 a         7198 c         8077 g         7212 t
ORIGIN      
        1 atcaactact atggtgggcg cagcgaaacg gaattaacca ccgcccaact gacgctgatc
       61 accgatgaag gatcggtcaa tgagaaacag gaaacattta ttgtaccgat gcgtaatgct
      121 ggcgagctga cgctggtgaa aagttttgac tggtgatcca tcccttcaca caacctggct
      181 ctctcttttt tcagataaga ctgctgggcg atctgccgac gccaggatat aaccattaac
      241 aagcgtcggc agattggtca tttcttattt ttcgtactga gaactgtcca tctactccgg
      301 ctttcctggt taaggcaatg gtttctaagc gatacgcatt attgcaataa tgacagaaca
      361 ttgcggtaac acgcttttac cgctacctta accacactcc atcggtcacc tgaggcggag
      421 cttcgcccct ttgaaatacc ttgcttcttt tcgtacaacc ctgaaagcct cgcgctacat
      481 gttcagagca ttggcgttag tgctctggct gttgattgct ttttcatccg ttttttacat
      541 cgttaatgcg ttacatcagc gagaatcgga aattcgtcag gaatttaatc tgagttccga
      601 tcaggctcag cgctttattc aacgcacctc tgatgtgatg aaagagctga agtacatcgc
      661 cgaaaatcgc ttatcggcag aaaacggtgt gctttccccg cgtggacgag aaacgcaggc
      721 ggatgtgcct gcgtttgaac cgctgtttgc cgactccgat tgttccgcaa tgagtaacac
      781 ctggcgaggt tctctggagt cattggcgtg gtttatgcgc tactggcgcg ataatttttc
      841 tgcggcttac gatctaaacc gggtattttt aatcggcagc gataacctct gcatggccaa
      901 tttcggtctg cgtgatatgc cagtggaacg cgataccgcg ttgaaagctt tgcatgaacg
      961 catcaataaa tatcgaaatg caccacaaga tgatagcggc agtaacctct actggatcag
     1021 cgaaggtccg cgccctggca tcgggtattt ttacgcgttg acgccagttt atctggcgaa
     1081 ccggttgcag gcgcttttgg gggtcgagca gaccatccgg atggagaact ttttcttacc
     1141 gggtacgttg ccgatggggg ttaccattct tgatgaaaat ggtcataccc tgatttcgct
     1201 taccggacca gaaagtaaaa ttaagggcga tcctcgctgg atgcaggaac gctcctggtt
     1261 tggctatacg gaagggttcc gggagctggt gctgaagaaa aatctgccac cctcatcgct
     1321 aagcatcgtg tattcggtgc cggttgataa ggtgcgggaa cgcattcgca tgttgatcct
     1381 taacgcaatt ttgctgaatg tgcttgccgg agctgcattg tttactctcg cacggatgta
     1441 cgagcgacgt attttcattc cggcggaaag cgacgccctg cgactggaag aacatgagca
     1501 gttcaatcgc aagattgtcg cctccgcgcc agtgggtatc tgcattttgc gtaccgctga
     1561 tggcgtcaat attttaagta acgaactggc gcatacctat ctcaatatgc ttacgcatga
     1621 ggaccgccaa cgactgacgc aaattatctg tgggcagcag gtcaattttg ttgatgtcct
     1681 gaccagcaac aataccaatc tgcaaatcag cttcgtccat tcgcgctatc gtaatgaaaa
     1741 cgtggccatt tgtgtgctgg tggatgtttc ttcgcgcgtg aagatggaag agtcgttgca
     1801 ggagatggca caagcagcgg aacaggcgag ccagtcaaaa tcgatgttcc ttgccaccgt
     1861 cagtcatgag ctgcgaacgc cgctgtatgg cattatcggt aacctggatc tgttgcaaac
     1921 caaagagtta ccgaaaggcg tcgatcggct ggtgacggca atgaacaact cttccagcct
     1981 gttgttgaaa attatcagcg atattctcga tttctcgaag attgaatcgg aacagttgaa
     2041 gatcgaaccg cgtgagtttt caccgcgtga agtgatgaac cacatcaccg ccaactattt
     2101 accgctggtg gtacgcaagc agttaggctt gtactgcttt attgaaccgg atgtgccagt
     2161 ggccttaaat ggcgacccga tgcgtttaca gcaggtcatc tccaacctgt tgagtaacgc
     2221 cataaaattc accgataccg gctgtatagt tttgcatgtc cgcgctgatg gcgattatct
     2281 ctctatccgt gttcgcgata ccggcgtggg gattccggcg aaagaagtgg tgcgcttgtt
     2341 tgatcccttc ttccaggtcg gaacgggcgt acagcgaaac ttccagggga ccggtctggg
     2401 tctggcgatt tgtgaaaaac tgatcagcat gatggacggc gatatctcgg tagattcaga
     2461 accgggaatg ggcagccagt ttaccgtgcg tattccgttg tacggcgctc agtacccgca
     2521 gaaaaaaggc gtggaagggt tgagtggtaa acgctgctgg ctggcggtcc gcaatgcgtc
     2581 gctctgtcag ttcctggaaa ctagtttgca gcgcagcggc atcgtcgtta caacatacga
     2641 agggcaggaa ccgactcccg aagatgtgtt aattactgac gaggtagtga gtaaaaaatg
     2701 gcagggtaga gcggtagtga ccttctgtcg tcgccatatt ggtattccgc tggagaaagc
     2761 gccaggggag tgggtacaca gtgtggctgc cccgcatgag ctaccggcat tgttggcgcg
     2821 tatttatttg atcgagatgg agagcgacga tcctgctaac gctctgccgt cgacggacaa
     2881 agcggtcagc gataatgacg atatgatgat tctggtcgtg gatgatcatc cgattaaccg
     2941 acgtctgctg gcagatcagt tgggatcgtt gggctatcaa tgtaaaaccg cgaatgatgg
     3001 tgtcgatgcg cttaatgtac ttagcaagaa tcatattgat atcgtgctta gcgacgtcaa
     3061 catgccaaat atggatggtt accgcttgac gcaacgcatt cgtcagttgg gactgacgtt
     3121 gccggtaatc ggagtaactg ctaatgcgtt ggctgaagag aagcagcggt gtctggagtc
     3181 cggtatggac agctgcctgt cgaagccggt aacgctggat gtgataaaac agacgctgac
     3241 ggtatatgcc gagagggtca ggaaatcgcg ggaatcgtag gacggataag gtgtttatgt
     3301 cgcatctggc attcagtgca aatgccagat gcgacgctga cgcgtcttat ctggcctaca
     3361 ggtgattagt ctttatctgc cggacttaac gtcactgaag agagataatt cagcagggcg
     3421 atatcgttct cgacacccag cttcatcatc gcagatttct tctggctact gatggtttta
     3481 atactgcggt tcagcttttt agcgatctcg gtcaccaaga agccttccgc aaacaggcgc
     3541 agaacttcac tctcttttgg cgagagacgc ttgtcaccgt aaccaccagc actgattttt
     3601 tccaacaggc gagaaacgct ttccggggta aatttcttcc ctttctgcag cgcggcgaga
     3661 gctttcggca gatcggtcgg tgcaccttgt ttcagcacga tcccttcgat atccagatcc
     3721 aataccgcac taagaatcgc cgggttgttg ttcatagtca gaacaatgat cgacaggctt
     3781 gggaaatggc gcttgatgta cttgattaag gtaatgccat cgccgtactt atcgccaggc
     3841 atggagagat cggtaatcaa cacatgcgca tccagtttcg gcaggttgtt gatcagtgct
     3901 gtagagtctt caaattcgcc gacaacattc acccactcaa tttgctcaag tgatttgcga
     3961 ataccgaaca agactatcgg atggtcatcg gcaataatta cgttcatatt gttcatgtaa
     4021 taggctacct tgctacagca agctcttgac ataactgtca atgtcgctga tgtatttttc
     4081 tattcctgga acatccttct cacgaatcag atgttccagc gtttcacata actgcttgcc
     4141 gggtaccaga tttagcatgg caaatacgcc tttaagacga tgagccgttt gggctaacgc
     4201 agcaaagtca ctggttgctg cttcagtata cagcctctta acatcatccg gtactgtgtc
     4261 tacaaagagc gcataatagc cgctggcatg gagttgcgca ttttcatctc cgcccagagg
     4321 cgattctgtc acctcttcct gcgccagttg cacttcaatt aattgtaaga ccgcttcctg
     4381 catagcgttg ctcatattga agttgacgca caattgacca ggcccaattt ctcgtacgcc
     4441 agactcatca tcgcttaaaa gcaagccaga ggcagtaaga ttagacggat tatccgttaa
     4501 aaagatatca taatcttgac taattaatct ttcatcgggt gtgatacagg ttgcacccca
     4561 attttctaac tggcgagtga caatattccg aatttctgcc gaagtaacat ccaccattac
     4621 gcagacatca tccagtaaac gctcttcttc ctcttcaact tccgggtcag cggcgagcat
     4681 tttgatatgc acagagtagc gtgtaccaag cccatcccgc gttttgatgt ttaaatgacc
     4741 gcccagttta cgcgccagtt gatcgctcag ccagaatgcc agcgggtccg ccttgctata
     4801 gcgatcgttt tggggctggt tgataaacgg gaagtgcaaa ttatccattt catgaatact
     4861 tacgccttct cccgtgtcca gaatgcggaa tgtcaggcgg tcttcagagg actcatcctg
     4921 atcaacctca agggtgattt ttcccaattg cgttgaggtc acggcatatt gcatcagtag
     4981 cagcaaaata cgtcgtaagg catcgcgatc gccgcggcgc atatcgtgtg ctttcagatg
     5041 attgttaatc agcagttgca gacctttacg cttgatggca ggcaacactg aaggcacaac
     5101 ttcatcaatt aaatcctgca cggagaacag caccgtctca cttttccagc tatcgtccgc
     5161 aagcatgttc gctaactgta tttcatcgac cagccgcacc agcacatctg cctgattcgc
     5221 cagttgtttg ctttccgggg cgttgagttt agccgcgctc tccgccaggg actgtgcggg
     5281 ttctttcagc gcatcgccaa tgtttttcat aaaggtcatc cgcccctgct ggtttttctc
     5341 atacagacgc tgcgcctgct tgagtttctt gtttaccagc acttcgcgat cctgatcgcg
     5401 aataatgaaa atttgtgtgc gcggcgcgac ctggctgcgg aacatgcgga tctcatacag
     5461 ctcgttattg atcgtcgcct gaataatccc ctgatgctgt tccgccatgg tggtgatgtt
     5521 ttgcagattc aaatgcggca gcaaatgatc ggcaattttg ttacttatga cagtgcggtt
     5581 cgattcctga tcgtgaacca gcaggccgag cggcagcagt gagactatct cttcattaat
     5641 tgcccgtaaa atgcgcaatt cgttattgac cgccgtgctg ggtagacttt ctgtactgcg
     5701 gctggagaaa tggcggaatg tggtatagcc aaataacgcc agcgccagca aaccgatgtt
     5761 cagcagcagt ggcagcagaa tgttttgcaa cgtatccagc aataaggtgc cataaggaac
     5821 ctgccagacc aggcgcacat cggtagagtt gagtgccgag gagatttcaa tcttcgtact
     5881 gttaaagtgg atactgacgc tatccgtccc ttctttctca ttatcattgt ctcccgttgc
     5941 cgtcgcgtct ggctcaaggc ggaaactgtc cagcggcata cccggtggga tcaaatcatt
     6001 aatcggtaga tcaaaagcta cgaccgttgc cagatgtccc ggctggttga acgtggtacg
     6061 caaggtaaag taatgaccgt tctgccaggc caggcggcgc atgttagaaa aactttcgcg
     6121 ttcatcgagg gcgttggcct gttgcaacat ctctgcacga cgtgaatcaa caatgtcgct
     6181 gacggtcgat tctttaaatc cggaggtgag atctttgagg ggcagggttg agatcagcac
     6241 cagactgtta tcctgaccat tcaggtaata catcgaccac ggtacatttt ctgcgcccca
     6301 caatgtgtcc agataggtgg acatccgctg agtcatctca agcgttgagt tgtcgtgaga
     6361 gccaaagatt aacgcttccg ttttgcggcg cggtttctcc agatagtaga catcctgttt
     6421 caggaaacct tcgccggagg agggggaggt cgtcgcggca atgttgtcgt agatctgcca
     6481 ggtcacgtaa cgccaggtat tgacgcgctt ttggatagcg tgggtaatgt cgacaatctg
     6541 gtaactttta tctttcagcc atgcgttaac ggcgctttgt accattacac ccatcgtcac
     6601 cagtaacaca atgatcaaca gtaaaaagaa gcgggtaatg ctccccggta ggagtgaaaa
     6661 gcgggtcgtg gccgttgtct ctttctgacg cattcgtgtt tatgatctgt taaaacttcg
     6721 cgaagtgata gggcagtata aagggtacag tgtgaaattc cagactctta cctgattgat
     6781 gattctctat tctcccgtga tatttatcat cctgcattgg gggaaataga tgtacaagct
     6841 ccattttgct gtacaaataa cctacaaaaa gcccaacgaa attaattgca aataaacgat
     6901 gattgctgga aattatgctg atgttaatta tttgtgaaat agttaacaag cgttatagtt
     6961 tttctgtggt agcacagaat aatgaaaagt gtgtaaagaa gggtaaaaaa aaccggatgc
     7021 gaggcatccg gttgaaatag gggtaaacag acattcagaa atgaatgacg gtaataaata
     7081 aagttaatga tgatagcggg agttattcta gttgcgagtg aaggttttgt tttgacattc
     7141 agtgctgtca aatacttaag aataagttat tgattttaac cttgaattat tattgcttga
     7201 tgttaggtgc ttatttcgcc atccacaata atcttaaaaa gttcccttgt atttacattt
     7261 tgaaacatct acagcgataa atgaaacatc ttaaaggttt tagtatcata ttcgtgttgg
     7321 attattctgc atttttgggg agaatggact tgccgactga ttaatgaggg ttaatcagta
     7381 tgcagtggca taaaaaagca aataaaggca tataacagag ggttaataac atgaaagtta
     7441 aagtactgtc cctcctggtc ccagctctgc tggtagcagg cgcagcaaac gctgctgaag
     7501 tttacaacaa agacggcaac aaattagatc tgtacggtaa agtagacggc ctgcactatt
     7561 tctctgacaa caagtcagaa gacggcgacc agacctatgt acgtcttggt ttcaaaggcg
     7621 aaactcaggt tactgaccag ctgaccggtt acggccagtg ggaatatcag atccagggca
     7681 atacctctga agacaacaaa gaaaactcct ggacccgtgt ggcattcgca ggtctgaaat
     7741 tccaggatgt aggttctttc gactacggtc gtaactacgg cgttgtttac gacgtaactt
     7801 cctggaccga cgtactgcca gaattcggtg gcgacaccta cggttctgac aacttcatgc
     7861 agcagcgtgg taacggcttc gcgacctacc gtaacaccga cttcttcggt ctggttgacg
     7921 gtctgaactt tgctgttcag taccagggca aaaacggtag cgtaagcggc gaaggcatga
     7981 ccaacaacgg tcgtggcgct ctgcgtcaga acggcgacgg tgtcggcggt tctatcactt
     8041 atgattacga aggcttcggt atcggtgctg cagtttccag ctccaaacgt actgatgatc
     8101 aaaatggtag ctacatcagc aatggtgtag ttcgtaacta catcggtact ggcgaccgtg
     8161 ctgaaaccta cactggtggt ctgaaatacg acgctaacaa catctacttg gctgctcagt
     8221 acacccagac ctacaacgca actcgcgtag gttccctggg ttgggcgaac aaagcacaga
     8281 acttcgaagc tgttgctcag taccagttcg acttcggtct gcgtccgtct gtagcatacc
     8341 tgcagtctaa aggtaaaaac ctgggtgtca tcaatggtcg taactacgac gacgaagata
     8401 tcctgaaata tgttgatgtt ggcgcgacct actacttcaa caaaaacatg tccacctatg
     8461 ttgactacaa aatcaacctg ctggacgaca accagttcac tcgtgacgct ggcatcaaca
     8521 ctgataacat cgtagctctg ggtctggttt accagttcta atctcgattg atatcgaaaa
     8581 aagggcctgc gggccctttt ttcattgttt tcagcgtaca aactcagttt tttggtgtac
     8641 tcttgcgacc gttcgcatga ggataatcac gtatggaaat aagctttacc cgcgtggcac
     8701 tgctggctgc cgcgctcttc tttgttggtt gcgatcaaaa accacaaccc gccaaaaccc
     8761 acgctactga agttaccgtt cttgaaggca aaaccatggg taccttctgg cgtgccagca
     8821 tcccgggcat tgatgccaaa cgcagtgccg aacttaaaga aaagattcag acccagctgg
     8881 acgccgacga tcagctgctt tcgacctata aaaaagattc cgcgctgatg cgctttaacg
     8941 actcgcaaag tttgtcgccg tggccagtaa gtgaagcgat ggccgaaatc gtcactacct
     9001 cgctgcgcat tggcgcgaag accgatggtg cgatggatat taccgtcggg ccgctggtaa
     9061 atctgtgggg ctttggcccg gaacaacagc cggttcaaat tccgagccag gaacagatcg
     9121 acgagatgaa agccaaaact ggtttacagc accttacggt cattaatcag tcgcatcagc
     9181 aatatctgca aaaagacctg ccggatttat atgtcgatct ctctaccgtc ggcgaaggtt
     9241 atgcggcgga tcacttggca cgcttgatgg agcaggaagg gatttcccgc tatctggtgt
     9301 cggtgggcgg cgcgctgaac agccgtggta tgaacggtga aggcctgccg tggcgggtag
     9361 cgattcaaaa accaaccgat aaagaaaacg cagttcaggc tgtggtggat atcaacggtc
     9421 atgggattag cacctctggc agctaccgta actattacga actggacggc aaacgtcttt
     9481 ctcatgttat cgatccgcaa accgggcgtc ccatcgaaca caatctggta tccgtgacgg
     9541 tgattgctcc gacggcgctg gaagccgatg cctgggatac tggcttgatg gtactcgggc
     9601 cggagaaagc caaagaggtt gttcgccggg aagggctggc ggtttatatg atcaccaaag
     9661 aaggcgatag ctttaaaacc tggatgtcac cacagtttaa aagcttcctt gtcagcgaaa
     9721 aaaattaaag cgcaagattg ttggtttttg cgtgatggtg accgggcaga ctaaaggcta
     9781 tccttaacca gggagctgat tatgaaaaac gccacatgct taactgacga tcaacgctgg
     9841 caatctgtct tagcccgcga cccgaatgcc gacggcgaat tcgttttcgc cgtgcgcacc
     9901 acaggcatct tttgccgtcc gtcttgccgc gccagacatg ccttgcggga aaatgtctcc
     9961 ttctacgcaa atgccagcga ggcactcgcc gccggatttc gcccctgcaa acgctgccaa
    10021 cctgataaag ccaatgccca gcaacatcgg ttggataaaa tcacccacgc gtgtcgactg
    10081 ctggaacagg aaacgcctgt aacgttggaa gccttagccg accaggtggc gatgagtcca
    10141 tttcatctac atcggttgtt taaagcgact accggaatga cgcctaaagc ctggcaacag
    10201 gcctggcgcg ctcgccgttt gcgcgaatcg ctggcgaaag gggagagcgt gacgacgtct
    10261 attcttaacg ccggattccc cgacagcagc agttactacc gcaaagccga tgaaacgctg
    10321 ggcatgacgg ctaaacaatt ccgtcacggt ggcgaaaatc tggcggtgcg ttacgcgctg
    10381 gctgattgtg cgctgggtcg ttgcctggtg gcagaaagcg agcgggggat ttgcgcgata
    10441 ttgctgggcg atgatgacgc gacattaatc agcgagttgc agcagatgtt tcccgctgcc
    10501 gacaacgcgc ctgccgatct gacgtttcag caacatgtgc gtgaagtgat cgccagcctc
    10561 aatcaacgcg atacgccgct gacgttaccg ctggatattc gcggcactgc ttttcagcaa
    10621 caagtctggc aggcactgcg cacgatacct tgcggtgaaa ccgtcagtta tcagcaactg
    10681 gctaacgcca tcggcaaacc gaaagcggta cgggccgttg ccagcgcctg tgccgccaac
    10741 aagctggcta tcgtaatacc ctgtcatcga gtggtccgtg gtgatggcac actttccggt
    10801 taccgctggg gcgtgtcgcg taaagcgcaa ctgctgcgcc gcgaagctga aaatgaggag
    10861 aggtaatgtt ggatctgttt gccgatgctg aaccgtggca agagccactg gcggctggtg
    10921 cggtaatttt acggcgtttt gcttttaacg ctgcggagca actgatccgc gatattaatg
    10981 acgttgccag ccagtcgccg tttcgccaga tggtcacccc cgggggatat accatgtcgg
    11041 tggcgatgac caactgtggg catctgggct ggacgaccca tcggcaaggt tatctctatt
    11101 cgcccattga tccgcaaaca aataaaccgt ggcccgccat gccacaaagc tttcatgatt
    11161 tatgtcaacg tgcggctacg gcggcgggct atccagattt ccagccagat gcttgtctta
    11221 tcaaccgcta cgctcctggc gcgaaactgt cgctgcatca ggataaagac gaaccggatc
    11281 tgcgcgcgcc aattgtttct gtttctctgg gcttacccgc gatttttcaa tttggtggcc
    11341 tgaaacgtaa tgatccgctc aaacgtttgt tgttggaaca tggcgatgtg gtggtatggg
    11401 gcggtgaatc gcggctgttt tatcacggta ttcaaccgtt gaaagcgggg tttcatccac
    11461 tcaccaccga ctgccgctac aacctgacat tccgtcaggc aggtaaaaaa gaataaaaat
    11521 aagaattatt attgctgtgc gcgcgaagat gtttaaactg cgggctgtaa ttcattgtcc
    11581 gggttttctg catggaactt cttgtacttg tctggcggca gtatcgctgg ccatttatca
    11641 gtgtgatggc gctaagcctc gccagtgcgg cattaggcat tggcttaatt gcttttatca
    11701 atcagcgcct tatcgaaatg gcggatacca gtctgctggt attgccggag tttctgggat
    11761 tattgctgct gttgatggca gtcactctcg gatcgcaact ggcgctcacc actttggggc
    11821 atcacttcgt ttaccgactg cgtagtgaat ttatcaagcg gattctggat acccacgtcg
    11881 agcgcattga acaactcggt agcgcctcgt tgctggcggg attaaccagc gatgtgcgca
    11941 atatcaccat tgcttttgtg cgtcttccgg aactggtgca ggggatcatt ctcactatcg
    12001 gttccgcggc gtatctgtgg atgctgtcgg gcaaaatgtt gctggtaacg gctatctgga
    12061 tggcgatcac catctggggt ggttttgtac tggtggcgcg ggtgtacaaa catatggcga
    12121 ccctacgtga aaccgaagac aagctgtaca cggattttca aactgtactt gaagggcgca
    12181 aagagctgac tctgaaccgg gaacgcgccg agtatgtgtt taacaacctc tacatccccg
    12241 atgcgcaaga gtatcgccat catattattc gcgcagacac cttccatctt agtgccgtga
    12301 actggtcaaa catcatgatg ctgggcgcta tcggcctggt gttctggatg gcgaacagtc
    12361 tcggttgggc tgataccaac gttgctgcga cctattcgtt gacgctttta ttcctgcgta
    12421 cgccgctgct ttcggcggtt ggcgcattgc cgacgctgct gacggcgcag gtggcgttta
    12481 acaagctgaa caaattcgcg ctcgcgcctt tcaaagcaga gtttccgcgc ccgcaggcgt
    12541 ttcccaactg gcaaacgctg gagctgcgta atgtgacgtt tagctatcag gataacgcgt
    12601 tttccgttgg tccgattaat ctcaccatca aacgtggcga gctactgttt ctgattggtg
    12661 gtaacggtag tggaaaatcg acgctggcga tgttgttgac gggcttgtat cagccacaaa
    12721 gcggcgaaat cttgctggat ggcaaacctg tcagcggcga acaaccggaa gattatcgca
    12781 aactgttttc ggcagtgttt accgatgtct ggctgtttga tcaactgctg gggccggagg
    12841 gtaaacccgc taacccgcaa ctggttgaga agtggctggc gcagctgaaa atggctcata
    12901 agcttgagtt aagcaacggg cgtattgtta acctgaagtt atcaaaaggg cagaaaaaac
    12961 gcgtggcgct gttgctggcg ctggcagaag aacgcgatat tatcctgctg gatgaatggg
    13021 cggcggatca ggatccacac ttccgtcgtg agttttatca ggtgttgctg ccgctgatgc
    13081 aggagatggg taaaactatt ttcgctatca gtcatgatga tcattacttt atccacgccg
    13141 accgcctgct ggaaatgcgc aatgggcaac ttagcgagct gacgggcgaa gagcgcgatg
    13201 ccgcttcgcg tgatgccgtt gcccggacgg cataatatta cgacgctgac ctggcggact
    13261 gctgccgtca ggtcaatatg ctaaaaatcc cttcatttct aataacccta taattaatca
    13321 acgaaattat aatgtttcta aaattagaat ataatttata aacattattt aaatgttgtt
    13381 acttaagtgt tacctttgat gccgcgcaaa tctcacctgc aataaagcga ctaaaagtaa
    13441 ggcattaaca agatgaaaaa agtgactgcc atgctcttct cgatggccgt ggggcttaat
    13501 gccgtttcga tggcggcaaa agcgaaagcg tccgaggagc aggaaactga tgtactgttg
    13561 attggcggcg gcattatgag cgccacgttg gggacctatt tacgcgagct ggagcctgaa
    13621 tggtcgatga ccatgctgga gcgcctggag ggtgtcgcgc aggagagttc gaacggctgg
    13681 aataacgccg gaaccgggca ttctgcactg atggaactga actacacccc gcaaaacgcc
    13741 gatggcagta tcagtattga aaaagcagtc gccattaacg aagcatttca gatttcccgc
    13801 cagttctggg cgcaccaggt cgagcgcggc gtgctgcgta ctccgcgttc atttatcaat
    13861 accgttccgc atatgagctt tgtctggggc gaggataacg ttaatttcct gcgcgcccgt
    13921 tacgccgcgt tgcaacaaag ctcgctgttt cgcggtatgc gttactctga agatcacgcg
    13981 cagatcaaag agtgggcacc gttagtgatg gaagggcgcg atccgcaaca gaaagtggca
    14041 gccacgcgta cggaaattgg taccgatgtg aactacggcg agatcacccg ccagttaatt
    14101 gcttccttgc agaagaaatc taacttctcg ctgcaactca gcagcgaagt ccgcgcccta
    14161 aagcgtaatg acgataacac ctggaccgtt accgttgccg atctgaaaaa tggcactgca
    14221 cagaacattc gtgccaaatt tgtctttatc ggcgcgggcg gtgcggcgct gaagctgtta
    14281 caggaatcgg ggattccgga agcgaaagac tacgccggtt tcccggtggg cggacagttc
    14341 cttgtttcgg aaaacccgga cgtggttaat caccatctgg cgaaggttta cggtaaagca
    14401 tccgttggcg caccaccgat gtcggttccg catatcgata cccgcgttct ggacggtaaa
    14461 cgcgtagtgc tgtttgggcc atttgccacc ttctcaacca aattcctcaa aaacggttca
    14521 ttgtgggatc tgatgagttc caccaccacc tctaacgtga tgccgatgat gcacgtcggg
    14581 ctggataatt tcgatctggt gaaatatctg gtgagtcagg tgatgttgag tgaagaggat
    14641 cgttttgaag cgttgaaaga gtactatccg caggcgaaaa aagaggactg gcgtttgtgg
    14701 caagcggggc agcgtgtgca gattatcaag cgtgatgccg ataaaggtgg tgtactgcgt
    14761 ctgggtactg aagtggtcag tgaccagcaa gggaccattg ccgcgctcct gggagcatcg
    14821 ccaggggcgt caaccgccgc gccgattatg ttggatctgc tggaaaaagt atttggcgat
    14881 cgcgtttcca gcccgcaatg gcaggctacg ttgaaagcga tcgttccgtc ttatggacgc
    14941 aagctgaacg gtgatgtagc ggcaacagaa cgcgagttgc agtacaccag cgaagtgctg
    15001 gggctgaaat acgacaagcc gcaggcagca gatagtacgc caaaaccgca gttgaaaccg
    15061 caacccgttc aaaaagaagt ggcggatatt gcgttgtaat gatgtgccac atccggcatg
    15121 gtatgccgga tgtggcgtat actgataaga cgcgccagcg tcgcatcagg caaccggctc
    15181 gggcgttaga tgttggatgc ggcgtaaccg ccttatccaa ccaacggggt gccgtacttc
    15241 acaacagttt agcgaacttc tgcgttgtca attttctctt ccgccttcca gacgcggtat
    15301 ttcacatcta cattgtctgg cgtatacacc acgatcggca gcttgctgtt gtaacgcagc
    15361 attccagcat cgcccagata cgcggtgaca aatttcttct ctttcttgcc atccgggcag
    15421 gccatcatcg tggaaaccgg cgagctaact ttatcaaaga cataataatc atagccccag
    15481 ccttccagcg ttttgctttc cagcttcccg ccgagacgat gcaaattgca atcgacttcc
    15541 agcgtctgac cgattaacag ttctactttc agggtagatt catcttcttg cggggttaac
    15601 tgaatcacct gacgcttcat ccctttttca gcttgtggat aaggcgcgat tttttccagt
    15661 ggctggacgc tttctgccgc ccaggcggaa gtggtagcga aagcggcaaa caatactgca
    15721 ggtagaatgg tcttcatttt tttgctttcc ttcttcattt ataggttttc accgatgatg
    15781 tcgctgaagg ttaacatatt cataagattt attaatttgc tttatgaata acttaaagaa
    15841 tattcagaca attttacctg ctcttttagt gttaaattct gatgagagaa caaaccagca
    15901 gaaatatctc tggtgaatta atcgctatat aaatatgttt ataaccattt gaaatgtgag
    15961 caaaagcccg tttttgccac gcttcccgcc actcttttga tcctgctaca ggttttaccc
    16021 cgatcggggt atgcatcttt gacacatcct ttaatatctt agcggttata aaaatggctt
    16081 attaattatg cggtttattt ggtcgctctc aattttcaga gcgcgttaat gatggaaggt
    16141 caatgtgaag attgatgcat cccgtcgggg catactcact ggtcgctggc gcaaagccag
    16201 taacggtatc cgtccgccct ggtccggtga tgaatctcat tttctgaccc attgcacccg
    16261 ttgcgacgcc tgtattaatg cttgtgaaaa caacattctg caacgcggcg cgggcggcta
    16321 tccgagcgtt aatttcaaaa ataacgagtg cagcttctgt tacgcttgcg cgcaggcttg
    16381 ccccgaatcg ctattttctc tgcgccacac tagggcctgg gatttgcagt tcaccattgg
    16441 ggacgcgtgc ctggcgtatc agtcagttga atgccgccgc tgtcaggata gctgtgagcc
    16501 aatggcaatt atctttcgcc cgacgctctc cgggatctac cagccgcaac ttaatagcca
    16561 actttgcaac ggatgtggag catgtgcagc cagctgtccg gtatcagcca taactgcgga
    16621 gtatctccat gcacactaac tggcaagttt gcagcctggt cgtgcaggcc aaaagcgaac
    16681 gaatttcaga catcagcacc caactgaacg cctttcccgg ctgtgaagtt gctgtcagcg
    16741 acgcgccgag cggtcagttg attgtggtgg tggaagcaga agacagcgaa acgctgatcc
    16801 aaaccattga gtcagtacgc aacgtagagg gcgtgctggc ggtgtcgctg gtttatcacc
    16861 agcaggaaga gcaaggtgag gaaacaccat gaaactcagt cgtcgtagct ttatgaaagc
    16921 taacgccgtt gcggccgctg cggcggctgc cggtctcagc gtgccgggcg ttgcccgcgc
    16981 cgttgttggt cagcaggaag ccatcaaatg ggataaagcg ccgtgccgtt tctgcggtac
    17041 tggttgcggc gttctggtcg gaacgcagca gggacgtgtg gtggcctgtc agggcgaccc
    17101 agacgcaccg gttaaccgtg gcctgaactg cattaagggc tatttcctgc ccaagatcat
    17161 gtacggtaaa gaccgtttga cgcagccgct gctgcgtatg aaaaacggta aatatgacaa
    17221 agaaggcgaa tttaccctaa tcacctggga tcaggccttc gatgtgatgg aagagaaatt
    17281 caaaaccgcc ctgaaagaaa aagggccgga atcgatcggt atgttcggtt ctggtcagtg
    17341 gactatctgg gaaggttatg ccgcgtccaa gctgtttaaa gcgggcttcc gttcgaacaa
    17401 catcgacccg aacgcgcgtc actgtatggc gtcggcagta gttggcttta tgcgtacctt
    17461 tggtatggat gagccgatgg gctgctatga cgacatcgag caggctgacg cgtttgtgct
    17521 gtggggcgca aacatggcgg agatgcaccc gatcctctgg tcgcgcatca ctaaccgtcg
    17581 tctctctaat cagaacgtca ccgtggcggt gctttctacc taccagcatc gtagcttcga
    17641 gctggcggat aacggcatca tctttacgcc acagtctgac ctggtgatcc tgaactacat
    17701 cgccaactat atcattcaaa acaatgcgat aaatcaggac ttcttcagca aacacgttaa
    17761 cctgcgcaaa ggggcgacgg acattggcta cggtttacgt ccgacccatc cgctggaaaa
    17821 agcagcgaag aatccaggtt ctgacgcctc cgaaccgatg agctttgaag attacaaagc
    17881 cttcgttgcc gagtatacgc tggaaaaaac tgccgaaatg accggcgtgc cgaaagacca
    17941 gttagaacaa ctggcgcagc tgtatgccga tccgaacaag aaagtcatct cctactggac
    18001 gatgggcttc aaccagcata ctcgtggcgt gtgggctaac aacctggtct acaacctgca
    18061 cctgctgacc ggcaaaattt cccagccggg ttgcggtccg ttctccctga ccgggcaacc
    18121 ttctgcgtgt ggtactgcgc gtgaagtggg cacctttgct caccgtctgc ctgcggacat
    18181 ggtggtgacc aacgagaaac accgtgatat ctgcgagaag aagtggaata tcccgagcgg
    18241 caccattccg gcgaaaatcg gtctgcacgc ggtggcacaa gaccgtgcgc tgaaagacgg
    18301 caaactgaat gtttactgga ccatgtgtac caacaacatg caggccgggc cgaacatcaa
    18361 tgaagagcgt atgccgggct ggcgcgatcc gcgcaacttc atcatcgtct ccgatccgta
    18421 tccgacagtc agtgcgctgg ccgccgactt gatcctgccg accgcaatgt gggtagagaa
    18481 agagggcgct tacggtaacg ccgaacgccg tactcagttc tggcgtcaac aggtacaggc
    18541 accgggcgaa gcgaaatcgg atctctggca gttagtccag ttctcccgcc gcttcaaaac
    18601 tgaagaagta tggccggaag atctgctggc gaagaaaccg gaactgcgtg gcaaaacgct
    18661 gtacgaagtg ctgtatgcca caccggaagt gagcaaattc ccggtatccg aactggcgga
    18721 agatcagctg aacgatgaat cccgcgagct gggcttctat ctgcaaaaag ggctgttcga
    18781 agagtacgca tggtttggtc gcggtcacgg tcacgatctg gcaccgttcg atgactacca
    18841 caaagcgcgc ggtctgcgct ggccggtggt gaacggtaaa gaaacgcagt ggcgttacag
    18901 cgaaggtaac gacccgtacg tgaaagcggg cgaaggctat aagttctacg gcaaaccgga
    18961 tggcaaagcg gtgatcttcg cactgccatt cgaaccggcg gcggaagcac cggatgaaga
    19021 gtacgacctg tggctctcta ccggacgcgt tctggagcac tggcacaccg gcagtatgac
    19081 tcgccgtgta ccagaactgc accgcgcctt cccggaagcg gtcctgttta ttcacccgct
    19141 ggatgcgaaa gcgcgcgatc tgcgtcgtgg cgacaaagtg aaagtggttt ctcgccgtgg
    19201 cgaagtgatc tcgattgtcg aaacgcgcgg tcgtaaccgt ccgccgcagg gcctggtgta
    19261 catgccgttc ttcgacgccg cacagctggt taacaaacta acgctggacg cgaccgatcc
    19321 gctctcgaaa gagacggact tcaagaagtg cgcagtcaaa ctggagaagg tgtaagccat
    19381 tatgtcccgg tcagcgaaac ctcaaaatgg tcgccgccgc tttctgcgcg atgttgttcg
    19441 cacagcaggc gggctggctg ccgtgggtgt ggcgctgggg ttacaacagc aaaccgcacg
    19501 cgcatctggc gtgcggttgc gcccgcccgg agccataaac gagaacgcct ttgccagtgc
    19561 ctgtgtgcgt tgcggtcagt gtgttcaggc ttgcccttac gacaccttaa aactggcgac
    19621 gctggcctct ggtctgtcgg cgggcacgcc atattttgtc gcacgggata ttccttgcga
    19681 aatgtgtgag gacattccgt gcgccaaagt gtgcccgagc ggtgcgctgg atcgtgagat
    19741 cgaatcgatc gacgacgcgc ggatggggct ggcggtactg gtggaccagg aaaactgtct
    19801 caactttcag gggctgcgct gcgatgtttg ttatcgcgaa tgcccgaaaa ttgatgaggc
    19861 catcaccctg gagctggagc gcaacacgcg taccggtaag cacgcccgct ttctgccgac
    19921 ggttcacaga gacgcctgta ccggttgcgg taagtgcgaa aaagtgtgcg tgctggaaca
    19981 accggcaatc aaggtgttac cgctgtcact ggctaaaggg gagttaggtc accattaccg
    20041 cttcggctgg ctggagggga acaatggcaa atcgtaaacg tgacgccggg cgcgaggcgc
    20101 tggagaaaaa aggctggtgg cgcagtcacc gttggctggt gttacgtcgc ctttgtcagt
    20161 tcttcgtgct ggggatgttt ttgagcggtc cgtggtttgg tgtgtggatc ttacacggta
    20221 actacagcag tagcctgtta ttcgacaccg ttccgctgac cgatccgctg atgacgctgc
    20281 aaagtcttgc cagcggtcat ctgcctgcca cggtggcgtt gaccggtgcg gtgattatca
    20341 ccgtgctcta cgccctggca ggaaagcgat tattttgcag ctgggtctgc ccgctgaatc
    20401 cgattaccga cttagcgaac tggttacgca ggcgctttga cctcaatcag tctgcgacga
    20461 tccctcgcca cattcgctac gtgctgttgg tggtcattct gctgggatcg gccttaactg
    20521 gcacgctcat ctgggaatgg atcaaccccg tatctctgat ggggcgcagc ctggtaatgg
    20581 gcttcggcag cggcgcgctg cttattctcg cgctgttttt atttgatcta ctggtcgttg
    20641 aacacggctg gtgcgggcac atttgtccgg ttggcgcgct gtatggcgtg ctgggtagca
    20701 aaggtgtgat taccgttgcg gccaccgatc ggcagaaatg taaccgctgt atggattgtt
    20761 ttcatgtttg cccggaaccg cgtgtgctac gtgccccggt gctggatgaa caaagcccgg
    20821 tgcaggtcac cagccgcgat tgcatgacgt gcggtcgctg cgtggatgtc tgttctgagg
    20881 atgtatttac aataactaca cgatggagtt cgggagcgaa atcatgaaaa gccatgacct
    20941 gaagaaagcg ctgtgtcaat ggacggcgat gctggccctg gtggtaagcg gcgcggtttg
    21001 ggcggctaat ggcgtcgatt ttagccagtc gccggaagta tccgggacac aggaaggggc
    21061 cattcggatg ccaaaagagc aggaacggat gccgctgaac tatgtgaatc agccgccaat
    21121 gatcccgcat agcgttgaag gttatcaggt aacgaccaat accaaccgct gcttgcagtg
    21181 ccacggtgtc gaaagttatc gcaccactgg cgcgccgcgc attagtccta ctcactttat
    21241 ggacagcgac ggcaaagtgg gcgcggaagt ggctccgcgt cgttatttct gtctgcaatg
    21301 tcacgtaccg caggccgata ccgcgccaat cgtggggaat acctttaccc catcaaaagg
    21361 ttacgggaaa taagaggtta ttatgggaaa ttctgaccgt aagcctggtc tgattaagcg
    21421 cctgtggaaa tggtggcgta cccccagccg tctggcgctg gggacgctgc tgttgatcgg
    21481 ttttgttggc ggcatcgtct tctggggtgg ctttaacacc gggatggaaa aagccaatac
    21541 cgaagagttc tgcattagct gccacgaaat gcgcaacacg gtgtatcagg aatacatgga
    21601 ttccgtgcac tacaacaacc gtagcggcgt ccgtgcgacc tgtccggatt gtcacgttcc
    21661 gcacgagttt gtgccgaaga tgatacgcaa gctcaaagca agtaaagagc tgtatggtaa
    21721 aatttttggc gttattgaca cgccgcagaa atttgaagct catcgtttga cgatggcaca
    21781 gaatgagtgg cggcgcatga aggacaataa ctcgcaggag tgccgtaact gtcacaactt
    21841 cgagtatatg gatacaaccg cccagaaatc ggttgccgcg aagatgcatg accaggcggt
    21901 gaaagatggg caaacctgta ttgattgcca taaagggata gcgcacaagc tgcccgatat
    21961 gcgtgaagtc gagccaggtt tttaacaggg ttattgcgtg ggtatgcttg aagccagaga
    22021 gttactttgt gagcgggatg aacgaacctt atttagtggc ttgtcattta cgctgaacgc
    22081 aggagagtgg gtacaaatca ccggtagcaa cggcgcgggg aagacaacgc ttctccgttt
    22141 gctgacgggg ttgtctcgcc ctgacgcagg cgaggttctc tggcaagggc agcccttgca
    22201 tcaggtacgc gacagctacc atcaaaacct gttatggata ggccatcagc cggggatcaa
    22261 aacccggctg acggcgttag aaaatctgca cttttatcat cgcgatggcg ataccgcaca
    22321 atgtctggaa gccctggcgc aggccgggct tgccggattc gaagatattc ctgtaaatca
    22381 gctctcggcc gggcaacaac gccgcgtcgc tttagcgcgt ctgtggctga cccgtgccac
    22441 gttatggatc ctcgacgagc cttttaccgc gattgacgtt aacggcgtcg atcgtctgac
    22501 ccagcgtatg gcgcagcata cggagcaggg ggggattgtg attctgacta cccaccagcc
    22561 gctcaacgtt gctgaaagta aaattcgccg catttcactg acgcaaacga gggccgcatg
    22621 atgttctggc gcattttccg tcttgagctg cgtgtagcgt ttcgccatag cgccgaaatc
    22681 gccaacccgc tgtggttctt cctgattgta attacccttt ttccgctcag tatcggtccg
    22741 gagccgcaac tgctggcgcg tattgcaccg ggcattatct gggttgctgc gctgctttca
    22801 tccttgctgg cgcaggaacg actgttccgt gacgatttgc aggacggcag tcttgaacaa
    22861 ttgatgttgt tgccgttacc cttgcccgcc gttgtgctgg cgaaggtgat ggcgcactgg
    22921 atggtaaccg gtctgccgtt actcatcctt tcgccactgg tagcaatgct actgggaatg
    22981 gatgtttatg gctggcaagt gatggcgctg acgctgctgc tgggaacgcc tacgcttggc
    23041 tttctcggtg caccgggtgt ggcgttgaca gtgggactta agcgcggtgg tgtgctgctc
    23101 agcatactgg tgttaccgct gactatccca ttactcatct ttgccaccgc cgcgatggac
    23161 gcggcttcca tgcatttgcc cgttgacggg tatctggcaa ttttaggcgc gttgctggca
    23221 ggcaccgcga cattaagtcc ttttgcgacg gcggcagcgt tacgaatcag cattcaataa
    23281 cgctggatta ctgatttttg ttcgagtctg gtatcgaaac tatgtggaaa acactgcatc
    23341 aactggcgat cccaccacgg ctgtatcaaa tctgtggctg gtttataccg tggctggcaa
    23401 ttgccagtgt ggtcgtgctt accgtcggct ggatctgggg attcggcttt gctccggctg
    23461 attatcagca gggaaatagc taccgcatta tctacctgca tgtgcctgcg gcgatctggt
    23521 cgatgggtat ttatgcatca atggcggtgg cggcgtttat tggccttgtc tggcagatga
    23581 aaatggccaa cctggcggtg gcggcgatgg cccccattgg tgccgtgttt acctttattg
    23641 ccctggttac cggctctgca tggggaaaac cgatgtgggg cacctggtgg gtatgggatg
    23701 cacgtctgac ttctgaactg gtgctgctgt ttttgtatgt gggtgtgatt gccctgtggc
    23761 acgccttcga cgaccgccgt ctggcgggcc gtgcggcagg tatcctggtg ctgattggcg
    23821 tggtgaatct gccgattatt cattactccg tggagtggtg gaacaccctg catcagggat
    23881 caacgcggat gcagcaaagt atcgatccgg cgatgcgttc gccgctgcgc tggtcgattt
    23941 ttggcttcct gctcctgtct gccacgctga cgctgatgcg gatgcgtaat ttgattttgc
    24001 tgatggaaaa acgccgtccg tgggtgagtg aactgatact gaaaagaggc cgtaaatgac
    24061 ccctgcattt gcttcctgga atgaattttt cgcaatgggc ggttacgcct tttttgtctg
    24121 gctggcggtg gtgatgaccg ttattccgct ggtggttttg gtcgtgcact cggtgatgca
    24181 gcatcgcgca attctgtgtg gtgtggagca acagcgggcg cgtgaggcgc gtttacgtgc
    24241 tgcgcaacag caggaggctg catgaatatt cgccgtaaaa accgcttgtg gattgcctgt
    24301 gctgtgttgg caggtttggc gctgaccatc ggtctggtgc tgtatgcgct gcgctcgaat
    24361 atcgatctct tttatacgcc gggggaaatt ctctacggca agcgtgaaac tcagcaaatg
    24421 ccggaagtcg gtcagcgtct gcgcgttggc gggatggtga tgccgggtag tgtgcagcgc
    24481 gatcccaatt cgctgaaagt gaccttcacc atttacgacg ctgaaggctc agtggatgtc
    24541 tcttacgaag gcattttgcc ggatctgttc cgtgaagggc agggcgttgt ggtgcagggc
    24601 gagctggaaa aaggcaatca tatcctcgcg aaagaagtgc tggcgaaaca cgacgaaaac
    24661 tacacgccgc cagaagttga gaaagcgatg gaagctaacc accgtcgccc ggcgagtgtt
    24721 tataaggacc cagcatcatg atgccggaaa ttggaaacgg gctgctgtgc ctggcgctgg
    24781 gaattgcgct gctgctgtcc gtgtatccgc tatggggcgt ggcgcgcgga gatgcgcgca
    24841 tgatggcgtc ttcccgcttg tttgcctggc tgctgtttat gtctgtggct ggcgcatttc
    24901 tggtgctggt caatgctttc gtggtcaacg actttaccgt cacctatgtt gccagcaact
    24961 ccaataccca gcttccggtg tggtatcgcg tggcggctac ctggggcgcg catgaaggtt
    25021 cgcttctgct gtgggtgctg ctgatgagcg gctggacctt tgcggtggcg atttttagtc
    25081 agcgtattcc gctggatatt gtggcccgtg tactggcgat aatggggatg gtcagcgtcg
    25141 gctttttgct gttcattctc tttacctcta acccgttctc acgcacgctg ccgaacttcc
    25201 caattgaagg gcgcgatctt aacccgctgt tacaggatcc ggggctgatc ttccatccgc
    25261 ctctgcttta tatggggtac gtgggtttct cggtggcgtt tgcttttgcc attgcttctt
    25321 tgctgagcgg gcgtctggac agcacttatg cgcgttttac tcgcccgtgg acgctggcgg
    25381 cgtggatttt cctgacgctc ggcattgtgc tcggttccgc atgggcctat tacgaactcg
    25441 gctggggggg ctggtggttc tgggatccgg tagaaaacgc ctcgtttatg ccgtggctgg
    25501 tggggactgc gctgatgcac tcactggcgg tcactgaaca acgcgccagc ttcaaagcgt
    25561 ggacattact gctggcaatc agtgccttct cgttgtgtct gctggggact ttcctggtgc
    25621 gttccggcgt gctggtatcg gtacacgcgt ttgcctctga tccggcacgc ggtatgttta
    25681 tcctcgcctt tatggtactg gtgattggtg gttcgctgct gctgtttgcc gcgcgtggac
    25741 acaaagttcg ctcacgcgta aacaatgcgc tgtggtcgcg ggaatctctg ctgttagcga
    25801 acaacgtttt gttggtcgcc gcgatgctgg tggtattact ggggacgctg ctgccgctgg
    25861 tgcacaagca actgggactg ggcagtattt cgattggcga accgttcttc aacaccatgt
    25921 ttacctggct gatggtgccg tttgcgctgc tgcttggtgt cggtcctctg gtgcgctggg
    25981 ggcgcgatcg cccacgtaaa atccgcaatt tattgattat cgccttcatc tcaacgctgg
    26041 tgctgtcgct gctgctgccg tggctgttcg aaagcaaagt tgtggcgatg acggtgctcg
    26101 gcctggcaat ggcctgctgg attgctgtgc tggcaattgc ggaagctgcg ctgcgtattt
    26161 cacgtggcac gaaaaccacc ttcagttatt ggggaatggt ggcggctcac ctggggctgg
    26221 cagtgacaat tgttggtatt gcctttagcc agaactatag cgttgagcgt gatgtgcgca
    26281 tgaagtccgg cgatagcgtc gatattcatg aatatcgctt caccttccgt gatgtcaaag
    26341 aggtgactgg cccgaactgg cgcggcggtg tggcgactat tggcgtaacg cgagagggta
    26401 aaccggaaac ggtgctgtat gcggaaaaac gttattacaa cactgccggg tcgatgatga
    26461 ccgaagcggc gattgacggc ggcatcacgc gtgacctgta cgccgcgctc ggtgaagagc
    26521 tggaaaacgg cgcgtgggcc gtgcgtcttt actacaaacc gtttgttcgc tggatttggg
    26581 cgggcgggct gatgatggcg ttgggcggac tgctgtgtct gtttgatcct cgctatcgta
    26641 agcgcgtgag tccgcaaaaa actgcgccgg aggctgtatg aagcgcaaag tattgttaat
    26701 tccgttgatt atcttcctgg cgattgccgc ggcgctgctg tggcagctgg cgcgtaatgc
    26761 cgaaggggat gatccgacca atctggaatc ggcgctcatt ggcaagccag tgccgaagtt
    26821 tcgcctcgaa tcactggaca atccggggca gttttatcag gcggatgtgc tgactcaggg
    26881 caaacctgtg ctgcttaacg tctgggctac ctggtgtccg acctgccgtg cggaacatca
    26941 atatctgaat cagctttctg cgcagggcat tcgcgtggtc ggcatgaact ataaagacga
    27001 tcgccagaag gcaataagct ggctgaaaga gctgggcaat ccttacgcgc taagcctgtt
    27061 tgatggcgat ggcatgttag ggctggatct cggtgtctat ggcgcgccag aaacgttcct
    27121 catcgacggc aacggcatca ttcgctatcg ccatgcgggc gatctcaatc ctcgcgtctg
    27181 ggaagaagag atcaagccgc tgtgggagaa atacagtaag gaggccgcac aatgaggttt
    27241 ttattgggcg tgctgatgct gatgatctcc ggctcagcgc tggcgaccat cgacgtgttg
    27301 cagtttaagg atgaagcgca ggagcagcag ttccgccaac tcactgaaga actacgctgc
    27361 ccgaaatgcc agaacaacag cattgccgat tccaactcga tgattgccac cgacctgcgc
    27421 cagaaagtgt atgaactgat gcaggaaggt aaaagtaaaa aagagattgt cgattatatg
    27481 gtggcgcgtt acggcaactt cgtcacttac gatccgccgt taacgccgct gaccgtgctg
    27541 ctgtgggtgc ttccggtagt ggctattggc attggcggtt gggtcattta cgcccgttcg
    27601 cggcgtcggg tacgcgtggt gccggacgcg tttcctgaac aaagcgtgcc ggaaggtaag
    27661 cgtgccggat atattgttta tctgccgggt attgtggtgg cgttaattgt ggctggcgtc
    27721 agctactacc agactggcaa ttatcagcag gtgaaaatct ggcagcaggc cacggcacag
    27781 gctccggcgt tgctggacag ggcgctggat ccgaaagccg atccgctcaa cgaagaagag
    27841 atgtcgcgtc ttgcgctggg gatgcgtact caactgcaaa aaaatccggg agatatagaa
    27901 ggctggatta tgttgggccg cgttggcatg gcgctgggta acgccagtat cgccaccgat
    27961 gcatacgcta ctgcgtatcg cctcgatccg aaaaacagtg atgcagcact gggttatgct
    28021 gaagcgttga cacgttcatc tgatcccaac gacaaccgcc tcggtggtga actgctgcgc
    28081 cagttggtga gaacggacca tagcaatatc cgtgtgttaa gcatgtatgc gtttaatgcc
    28141 tttgagcagc agcgatttgg cgaagccgtt gccgcgtggg agatgatgtt gaaactctta
    28201 tctgccaacg atactcgccg tgcggtgatt gaacgtagta tcgcgcaggc gatgcaacat
    28261 ttgtcgccgc aggagagtaa ataaaaagag gcccgatggt gatgccatcg ggctattttt
    28321 attgtgcccc gcgttgttgc aggaacagaa tggtggctgc cacgcgtgag cggacattga
    28381 gtttgcgcag cagattgcga atatgtactt ttactgtctg ctctgaaata ttcaacaccg
    28441 aggcaatctg tttatttgac agcccctgtg ccagctcgtg cagaacatcc agctcgcgct
    28501 ccgtcagcac gctgaaggga tcttcttccg cgccaaacat ttcacgttca cgtaagtact
    28561 gattgacgcg ttcgctaaag actttgctgc ctttcgctcc agcacgaatt gcttccagca
    28621 atacttccgg gtcgctgtct ttcaacagat aaccgtctgc gcctgcgtct atcagcgcaa
    28681 agacatcgct ggaggcatct gatacggtca ggataataat ttgcgcggta acgccatccc
    28741 tgcgcaaggc attgagggta tccaggccac tcataccttt catattgaga tccagcaaga
    28801 tcacgtcgat atccagtcta ttcgccagat cgatcgcgct cgcgccgtcg cccgcttcgg
    28861 cgaccacttc aaagccagga tcaagctcca gtaactgacg aacaccgcgt cgcataagtg
    28921 gatgatcatc cacaatcatc acctgaaaag gcgttgcttc aggcatagta gtctcctggg
    28981 gttttattag aatcattatg tttgagcgta gcgttggtaa cgctaccagg cgcgtgaatg
    29041 ttaccccatt ttatgtatgg acatgtagtg aaaactacaa ccttgtcgtt cgctttggca
    29101 tcattttcat tataaagacg gaattttgca tcagcttctc
//
LOCUS       DAJVUN010000037        29129 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.037, whole genome shotgun sequence.
ACCESSION   DAJVUN010000037 DAJVUN010000000
VERSION     DAJVUN010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29129
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.037"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            163..606
                     /locus_tag="OQQ76_001298"
     CDS             163..606
                     /locus_tag="OQQ76_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004997737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1967860.1"
                     /translation="MDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPT
                     TISRLNLTLTDVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFH
                     EIRSLSGRLHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI"
     gene            842..1660
                     /gene="ybhA"
                     /locus_tag="OQQ76_001299"
     CDS             842..1660
                     /gene="ybhA"
                     /locus_tag="OQQ76_001299"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyridoxal
                     phosphate/fructose-1,6-bisphosphate phosphatase"
                     /protein_id="HCS1967861.1"
                     /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIITG
                     RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHI
                     HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFAL
                     THDDMPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENV
                     VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI"
     gene            complement(1661..2719)
                     /gene="modC"
                     /locus_tag="OQQ76_001300"
     CDS             complement(1661..2719)
                     /gene="modC"
                     /locus_tag="OQQ76_001300"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HCS1967862.1"
                     /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI
                     SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMA
                     KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD
                     IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG
                     SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQ
                     ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA
                     IKPGLWLYAQIKSVSITA"
     gene            complement(2722..3411)
                     /gene="modB"
                     /locus_tag="OQQ76_001301"
     CDS             complement(2722..3411)
                     /gene="modB"
                     /locus_tag="OQQ76_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HCS1967863.1"
                     /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK
                     ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM
                     SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS
                     LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW
                     LARISRERAGR"
     gene            complement(3411..4184)
                     /gene="modA"
                     /locus_tag="OQQ76_001302"
     CDS             complement(3411..4184)
                     /gene="modA"
                     /locus_tag="OQQ76_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1967864.1"
                     /translation="MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDI
                     ATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQ
                     TLLGNSLVVVAPKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL
                     GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKV
                     EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK"
     gene            complement(4350..4499)
                     /gene="acrZ"
                     /locus_tag="OQQ76_001303"
     CDS             complement(4350..4499)
                     /gene="acrZ"
                     /locus_tag="OQQ76_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux pump accessory protein AcrZ"
                     /protein_id="HCS1967865.1"
                     /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ
                     PGQNH"
     gene            4628..5416
                     /gene="modE"
                     /locus_tag="OQQ76_001304"
     CDS             4628..5416
                     /gene="modE"
                     /locus_tag="OQQ76_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-dependent transcriptional regulator"
                     /protein_id="HCS1967866.1"
                     /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS
                     YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV
                     LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV
                     AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNANNQLPGIISHIERGAEQCE
                     VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC"
     gene            5484..6956
                     /gene="modF"
                     /locus_tag="OQQ76_001305"
     CDS             5484..6956
                     /gene="modF"
                     /locus_tag="OQQ76_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HCS1967867.1"
                     /translation="MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA
                     LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTT
                     AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD
                     EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGA
                     KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL
                     NNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDI
                     KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDK
                     RTADAPFHSLSWGQQHLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE
                     GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY"
     gene            7217..8233
                     /gene="galE"
                     /locus_tag="OQQ76_001306"
     CDS             7217..8233
                     /gene="galE"
                     /locus_tag="OQQ76_001306"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308814.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HCS1967868.1"
                     /translation="MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI
                     ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVN
                     GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL
                     TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF
                     GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLASKPGVHIYNLGAGIGSSVLDVVNAF
                     SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ
                     GYPD"
     gene            8243..9289
                     /gene="galT"
                     /locus_tag="OQQ76_001307"
     CDS             8243..9289
                     /gene="galT"
                     /locus_tag="OQQ76_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HCS1967869.1"
                     /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV
                     LPAHDPDCFLCAGNVRVTGDKNHDYTGTYVFTNDFAALMSDTPDAPESNDPLMRCQSA
                     RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC
                     SNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH
                     WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY
                     SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER
                     LRAVSDIHFRESGV"
     gene            9293..10441
                     /gene="galK"
                     /locus_tag="OQQ76_001308"
     CDS             9293..10441
                     /gene="galK"
                     /locus_tag="OQQ76_001308"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HCS1967870.1"
                     /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL
                     PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLNAPIVAHENYQWANYVRGVVKH
                     LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE
                     AENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL
                     VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV
                     EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGG
                     GFGGCIVALIPEELVPAVQQAVAEQYEAKIGIKETFYVCKPSQGAGQC"
     gene            10435..11475
                     /gene="galM"
                     /locus_tag="OQQ76_001309"
     CDS             10435..11475
                     /gene="galM"
                     /locus_tag="OQQ76_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HCS1967871.1"
                     /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL
                     SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ
                     LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY
                     RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT
                     SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT
                     TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE
                     YSSLTEYQFIAE"
     gene            11677..12429
                     /gene="gpmA"
                     /locus_tag="OQQ76_001310"
     CDS             11677..12429
                     /gene="gpmA"
                     /locus_tag="OQQ76_001310"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HCS1967872.1"
                     /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL
                     LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE
                     TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR
                     VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF
                     DENFKPLKRYYLGNADEIAAKAAAVANQGKAK"
     gene            complement(12587..13639)
                     /gene="aroG"
                     /locus_tag="OQQ76_001311"
     CDS             complement(12587..13639)
                     /gene="aroG"
                     /locus_tag="OQQ76_001311"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HCS1967873.1"
                     /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH
                     KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV
                     GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG
                     AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS
                     AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK
                     KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDT
                     DALLRQLANAVKARRG"
     gene            13955..14335
                     /locus_tag="OQQ76_001312"
     CDS             13955..14335
                     /locus_tag="OQQ76_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgS-like family protein"
                     /protein_id="HCS1967874.1"
                     /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAATDAGQ
                     VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD
                     INKKVQTGDGINNDVDTKTDGTTQ"
     gene            14449..15390
                     /gene="zitB"
                     /locus_tag="OQQ76_001313"
     CDS             14449..15390
                     /gene="zitB"
                     /locus_tag="OQQ76_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc transporter ZitB"
                     /protein_id="HCS1967875.1"
                     /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS
                     LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT
                     ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV
                     LGDLLGSVGAIIAALIIIWTGWTPADPILSIVVSLLVLRSAWRLLKDSVNELLEGAPV
                     SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYL
                     MAHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH"
     gene            complement(15387..16106)
                     /gene="pnuC"
                     /locus_tag="OQQ76_001314"
     CDS             complement(15387..16106)
                     /gene="pnuC"
                     /locus_tag="OQQ76_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HCS1967876.1"
                     /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK
                     ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR
                     WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP
                     FWDSCMMVLSIVAMLLMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA
                     LNGSRMWINSARERGSCALSH"
     gene            complement(16144..17187)
                     /gene="nadA"
                     /locus_tag="OQQ76_001315"
     CDS             complement(16144..17187)
                     /gene="nadA"
                     /locus_tag="OQQ76_001315"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HCS1967877.1"
                     /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM
                     VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK
                     TILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKVRADWVVTSSIAV
                     ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEY
                     PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPD
                     KELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVP
                     LNRMLDFAATLRG"
     gene            complement(17436..17511)
                     /locus_tag="OQQ76_001316"
     tRNA            complement(17436..17511)
                     /locus_tag="OQQ76_001316"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17476..17478),aa:Lys,seq:ttt)
     gene            complement(17658..17733)
                     /locus_tag="OQQ76_001317"
     tRNA            complement(17658..17733)
                     /locus_tag="OQQ76_001317"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17698..17700),aa:Lys,seq:ttt)
     gene            complement(17737..17812)
                     /locus_tag="OQQ76_001318"
     tRNA            complement(17737..17812)
                     /locus_tag="OQQ76_001318"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17777..17779),aa:Val,seq:tac)
     gene            complement(17962..18037)
                     /locus_tag="OQQ76_001319"
     tRNA            complement(17962..18037)
                     /locus_tag="OQQ76_001319"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18002..18004),aa:Lys,seq:ttt)
     gene            complement(18040..18115)
                     /locus_tag="OQQ76_001320"
     tRNA            complement(18040..18115)
                     /locus_tag="OQQ76_001320"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18080..18082),aa:Val,seq:tac)
     gene            complement(18151..18226)
                     /locus_tag="OQQ76_001321"
     tRNA            complement(18151..18226)
                     /locus_tag="OQQ76_001321"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18191..18193),aa:Lys,seq:ttt)
     gene            complement(18391..19182)
                     /gene="cpoB"
                     /locus_tag="OQQ76_001322"
     CDS             complement(18391..19182)
                     /gene="cpoB"
                     /locus_tag="OQQ76_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CpoB"
                     /protein_id="HCS1967878.1"
                     /translation="MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ
                     LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS
                     SGGAAAQSTSSDQSGAAASTTPTADAGTANAGAPVKSGDANTDYNAAIALVQDKSRQD
                     DAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD
                     AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM"
     gene            complement(19192..19713)
                     /gene="pal"
                     /locus_tag="OQQ76_001323"
     CDS             complement(19192..19713)
                     /gene="pal"
                     /locus_tag="OQQ76_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HCS1967879.1"
                     /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD
                     ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK
                     VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE
                     AAYSKNRRAVLVY"
     gene            complement(19748..21040)
                     /gene="tolB"
                     /locus_tag="OQQ76_001324"
     CDS             complement(19748..21040)
                     /gene="tolB"
                     /locus_tag="OQQ76_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HCS1967880.1"
                     /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW
                     AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPSAWSALGIDAVVVG
                     QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK
                     GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT
                     FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA
                     SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN
                     QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS
                     SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL"
     gene            complement(21173..22336)
                     /gene="tolA"
                     /locus_tag="OQQ76_001325"
     CDS             complement(21173..22336)
                     /gene="tolA"
                     /locus_tag="OQQ76_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HCS1967881.1"
                     /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG
                     GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER
                     LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAA
                     KKAAADAKKKAEAEAAKAAAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAK
                     AEAEKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAAEADDIFGELSSGKNAPKT
                     GGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIK
                     LAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKP"
     gene            complement(22401..22829)
                     /gene="tolR"
                     /locus_tag="OQQ76_001326"
     CDS             complement(22401..22829)
                     /gene="tolR"
                     /locus_tag="OQQ76_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HCS1967882.1"
                     /translation="MARARGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE
                     VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVDKDRLERLPPEQVVAEVSSRFKAN
                     PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI"
     gene            complement(22833..23525)
                     /gene="tolQ"
                     /locus_tag="OQQ76_001327"
     CDS             complement(22833..23525)
                     /gene="tolQ"
                     /locus_tag="OQQ76_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolQ"
                     /protein_id="HCS1967883.1"
                     /translation="MTDMNILDLFLKASLLVKLIILILIGFSIASWAIIIQRTRILNA
                     AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE
                     AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK
                     QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH
                     RQAFTVSESNKG"
     gene            complement(23522..23926)
                     /gene="ybgC"
                     /locus_tag="OQQ76_001328"
     CDS             complement(23522..23926)
                     /gene="ybgC"
                     /locus_tag="OQQ76_001328"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1967884.1"
                     /translation="MNTTLFRWLVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH
                     FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT
                     LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ"
     gene            complement(24076..24369)
                     /gene="ybgE"
                     /locus_tag="OQQ76_001329"
     CDS             complement(24076..24369)
                     /gene="ybgE"
                     /locus_tag="OQQ76_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HCS1967885.1"
                     /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS
                     ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIIGLIFFFF"
     gene            complement(24369..24482)
                     /gene="cydX"
                     /locus_tag="OQQ76_001330"
     CDS             complement(24369..24482)
                     /gene="cydX"
                     /locus_tag="OQQ76_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HCS1967886.1"
                     /translation="MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI"
     gene            complement(24497..25636)
                     /gene="cydB"
                     /locus_tag="OQQ76_001331"
     CDS             complement(24497..25636)
                     /gene="cydB"
                     /locus_tag="OQQ76_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HCS1967887.1"
                     /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT
                     ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV
                     GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
                     FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA
                     GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLP
                     LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ
                     LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY"
     gene            complement(25652..27220)
                     /gene="cydA"
                     /locus_tag="OQQ76_001332"
     CDS             complement(25652..27220)
                     /gene="cydA"
                     /locus_tag="OQQ76_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415261.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HCS1967888.1"
                     /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG
                     KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFN
                     FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKR
                     SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPD
                     QEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSG
                     STDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRI
                     MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP
                     WAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGR
                     YHFEQSSTTTQPAR"
     gene            complement(28068..>29129)
                     /locus_tag="OQQ76_001333"
     CDS             complement(28068..>29129)
                     /locus_tag="OQQ76_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1967889.1"
                     /translation="SSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEVWQSRAVIRYD
                     MAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPTPFN
                     TDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAVFSE
                     GLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLSCRL
                     SLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDAMKLNKAGFNVPESYSLLKMPPVG
                     CLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEENQGS
                     NLSGPFLPGQSRTFSYRLA"
BASE COUNT         7354 a         7655 c         7108 g         7012 t
ORIGIN      
        1 gacattttta aaacagctat agcttctggt cttgccgaag aagatccagc ttctgcaacc
       61 aggccattca gaactgaagt gaagcgcagt cgactgttaa ttgacgagta tctgttaatc
      121 aggaaaatag cagacgtcca gaacgaatgg ttcggccttt gcatggatct tgcactggta
      181 acaggacagc gcgaaggaga tctggcggct atgagatggg aggatataag agatggcagg
      241 ctatacgtgg aacaacaaaa aacaggggca aaaattcgca tttctctccc caccacgatt
      301 tccagattga atttaacact taccgatgta ctggataact tgaaaaaaat aaacggtaaa
      361 aacgaaaagt tactcggagg gaagacagcc aggacaatcg cagcacagtt caggattgcc
      421 cgagacacat ccggattgaa atgggaaggt gacccaccgc catttcatga aatccgaagt
      481 ttatccggtc gcctgcactc agcagaaaaa ggcagtgatt tcactcaggc gctccttgga
      541 catcgttcat ccagcatgac ggataaatac cgtgacggac gagggaggga atggaaagac
      601 atttagaatt aatttcgaac gatttcgaaa caccacttgt aattaattga ttataaagga
      661 ttaattccta agaggcattt gcttcatgaa tgctcctttg catttagcaa ctgactgtaa
      721 cagctaaaat tagtcgcttt tggcggtgaa tgctgaatta aaacgcagaa ttttgtccga
      781 tagtggtatc ggtgtaccat tcgcgcagac gaaaattctt aaccttaatc tggaatacgc
      841 catgaccaca cgcgtgattg ctctcgactt agacggcacc ttattgaccc cgaaaaagac
      901 cctgcttcct tcatcgatag aagccctggc ccgcgctcgc gaagcaggct atcaattaat
      961 catcatcaca ggtcgccatc acgtcgctat tcatcctttt tatcaggcgc tggcgctgga
     1021 tacacctgct atttgctgta atggcaccta tttgtatgat tatcatgcaa aaaccgtgct
     1081 ggaagcggac ccaatgcccg ttaataaagc cctgcaactc attgagatgc tgaatgaaca
     1141 ccacattcac ggtctgatgt atgtggatga tgcaatggtc tatgagcacc cgaccgggca
     1201 tgtcattcgc acgtctaact gggcgcaaac cctgccgccg gaacagcgtc cgactttcac
     1261 acaagtcgct tctctggctg aaacggcgca acaagttaac gccgtatgga agttcgccct
     1321 gacgcacgat gacatgccgc aattgcagca ttttggtaag catgtcgaac atgaactggg
     1381 actggagtgt gaatggtcct ggcacgatca ggttgatatt gcacgcggcg gcaacagcaa
     1441 aggtaaacgt ttgacgaaat gggttgaggc gcaaggctgg tcgatggaaa acgtcgtggc
     1501 gttcggcgat aactttaatg atatcagtat gctggaggcc gctggtacag gcgtggcgat
     1561 gggcaacgcc gatgacgcgg taaaagcgcg cgccaacatt gtgattggtg ataacaccac
     1621 cgacagcatt gcccagttca tttatagcca cctgatttaa tcaggcggtt atcgacacac
     1681 ttttaatttg cgcgtacagc cacaggcctg gtttgatcgc cagttcatcc ctggcccacg
     1741 ggctgatacg cgcccacagc gttttaccgc cgacttccag ctccacttcc acctgaccgt
     1801 tgtcgtcata actattaaca acttttgccc gcaatacgtt acgaatgctg gtttgctgcg
     1861 gcggttgtaa aaccagagaa acatcggaag cctgaatgcg gatacgtagc gcagcttgca
     1921 gcggttcgtc cagcttattg acccacaaat gctgatcgcc cagcgccagc gcggtcatcg
     1981 cgtaatgcgg atgatgctca agcaccgtca ctttcagaat gctactttgt tgctctttcg
     2041 gcagccacgg attcatcacg ctactacccc agacttcttc cagtgcgcca aaggctttca
     2101 cctgaccgtt ttccagtacc atcactctgt ctgccagatg gaggatctca tccagcgaat
     2161 ggctgacata caacatcggg atgttgattt cccgcgtcag acgttgcaga taaggcaaca
     2221 gttcgcgttt acgcggaata tccagtgacg ccagcggttc atccagcaac agcaattctg
     2281 gtgccgtcag caaagcccgc ccaatcgcta cgcgctgttt ttcgcctccg gacaggctgc
     2341 ctggtaaacg gtcaagcaac ggttcaatgc ctaaaagcgc caccagctta tcgaactgat
     2401 cgaccatgct tttcgccatg ccgtagcgca gattgccacg cactttgtaa tgcggaaaca
     2461 gccgcgcatc ctgaaaaaca tagccaacgc gacgcttttc tggcgtcagg cagatacctt
     2521 tttcggcatc atttagtacc cgaccattga ggacaatcct ccctttttgc gggcgcgtca
     2581 gtccactgat ggcgttaatc agcgaagttt ttccggcacc ggagacgcca aaaatagcag
     2641 tgatgccatt ggcgggcagc gtttcattaa tagtcaggca atggttgccc aacgtctggg
     2701 aaaaattcag ttccagcatg attagcgccc cgcccgttca cggctgattc tggccagcca
     2761 ttctgaaatc aacagggaga tcatcgccag cgcaatagaa ataatgcaca gtctcgccgc
     2821 gccactttcc ccgccggggg tctggatcag ggtatacatg gcagagggaa tggttcgcgt
     2881 ttcgccagga atgttcgaca caaaggtgat ggttgcacca aactcaccga gagaacgagc
     2941 aaaagccagt accgtaccaa caataattcc cggtaaggtc agcggtaacg tgatagtaaa
     3001 gaaaacgcgc cagcgcccgg cacctagtgt tcttgcggcc tgttcgagtt tgacatcaac
     3061 cccttccagc gccagacgaa ttgcccgcac catcagcgga aacgacatga cggcggcagc
     3121 gagaaccgcg ccgcgccagc taaaggcgaa ggtaatacca aaccagtcat acagacgttc
     3181 accgataaat ccgcgccgtc ccatcgaaac taataataag taaccgacga ccacgggcgg
     3241 taacaccagc ggtagatgca gtacgctgtc gagcagagct ttgcccggaa acgtgcaacg
     3301 cactagtaac caggcaaaaa agatcccaaa cggcaggcta aacagcacag ccagggaaga
     3361 aactttcagg cttaataaaa ctgcctgcca ttctggatcg gtcagtatca ttacttggtt
     3421 gtaaatccgt aacgtttaaa gatttccgct gcctgcggtc ccttcagata atcataaaat
     3481 gctttcactg tcgcattgtt atgcccttcc acaacagcaa ccggatattc cactttttta
     3541 tgtgaatctt ccgggaaggt ggcaaccact tttacccctt tgctgacaac tgcgtcagaa
     3601 ccgtaaacaa tgcccaacgg cgcttcattg cgttcgacca acgccagcgc gccacgaaca
     3661 tcttccgccg gagccaattt cggggagagc gtatcccatg cgcccagttt ttgcagtgct
     3721 tcttttgcat aaatgccagc agggacatgt tccggatcgc caaccgcgag gcgaccgcca
     3781 ttcagcagcg aagtccagtt agttgtgctg tcgatgatga aatctttctg ctcgctggct
     3841 ttcggtgcta caacgaccag gctattgccg agcagtgtct gccgcgaagc cgtatcgatc
     3901 gcttttttat caaccgcata atccatccat ttctgatcgg cagagataaa cagatccgca
     3961 ggcgctcccg cttcaatctg acgggccaga gtagatgacg aagcgaaaga agaaaccaca
     4021 tccacgcctt tttctttttt atactgcgta gcaatgtcct gcattgcgtt agtcagtgat
     4081 gcggcggcga acaccgtgat tttcccttca tctgccagtg tattgccagc aacagcgaaa
     4141 gagagtgccg ccccggcaaa caagttcaac catttacgag ccattggtaa ccccttaatg
     4201 taacgttata taggtgacaa cataacggct agctcagaat tttcccagca gttattgcta
     4261 acctttgtga ggtagataag aaaaaatatc ggctggaaaa gcaggaagtt gagaaaaaga
     4321 aatgcccgac taagtgggca ttcagggaat caatgatttt gtccgggctg gtctttttta
     4381 ccaacaccag aaaagatgtt gaatacttca ccaagaccgt aaatcagacc caggatgatg
     4441 gccatcacga caggtaccat gattacggcg aataccagac tttttaataa ctctaacatg
     4501 gtcaactcca gatatagtca tgagactatt ctaaccgcta agcacagaaa agcactcccc
     4561 ttttgtgcgg tcagctttgc gtggcgttcg ttttccgtca caataagact tttgccagga
     4621 cattgttatg caggccgaaa tccttctcac ccttaagctc caacaaaaat tattcgccga
     4681 cccgcgccgg atttcgctac taaaacacat tgcgctttcc ggttccatta gccagggagc
     4741 gaaagatgcc ggtatcagct ataaaagcgc ctgggatgcc attaacgaga tgaatcagtt
     4801 aagcgagcat attctggttg agcgcgcaac aggcggtaaa ggtggcggcg gcgcagtact
     4861 gacccgctat ggtcagcgac tgattcagct ctatgactta ctggcgcaaa tccagcaaaa
     4921 agcctttgat gtgttaagtg acgatgacgc cctgccgctg aacagcctgc tggccgcgat
     4981 ctcacgtttt tcactgcaaa ccagcgcccg taaccagtgg ttcggtacca tcaccgcccg
     5041 cgatcatgat gacgttcaac agcatgttga tgtcttactg gctgacggaa aaacacgcct
     5101 gaaagtcgca attaccgcac aaagcggcgc acgtctgggg ctggatgaag gcaaagaagt
     5161 gttgatattg ctaaaagcgc cgtgggtagg cattactcag gacgaagcgg tcgcacaaaa
     5221 cgccaacaac caattaccgg gtattattag tcatattgag cgcggcgcag agcagtgcga
     5281 agtattaatg gcgctacccg acgggcaaac actgtgcgcc acagtgccgg taaatgaagc
     5341 gacttctctt cagcaagggc agaatgtcac ggcctacttt aatgccgaca gcgtgattat
     5401 cgccacgctg tgctaagcgt gttgacaatt tgttatgaaa cacgtatccc tgtcagtaat
     5461 cgctgcacaa aatgggatat aatatgtcat cgttgcaaat tttgcaaggc acgtttcgtc
     5521 ttagcgacac aaaaacgctg caattgcctc agctaacgtt aaacgcgggt gatagttggg
     5581 cgtttgtcgg ttcgaatgga agcgggaaat cggccctggc ccgcgcgctg gcgggggaac
     5641 ttccgctttt gaaaggtgaa cggcaaagcc agttttccca catcactcgt ctctccttcg
     5701 agcaattgca aaaactcgtc agcgacgaat ggcagcggaa taacaccgat atgctcggcc
     5761 ctggcgaaga tgacaccgga cgcactacgg ctgagatcat tcaggatgaa gtaaaggatg
     5821 caccgcgttg catgcaactg gcgcagcagt tcggtattac cgccctcctc gaccgacgct
     5881 ttaaatacct ttccactggc gagacgcgaa aaaccctgct gtgtcaggcg ctgatgtcgg
     5941 agcctgactt gttgattctt gatgagccgt tcgatggcct ggatgttgcc tcacgtcagc
     6001 agctggctga gcgactcgcc tcgttacatc agtccggtat tactctggta ctggtgctca
     6061 atcgcttcga tgagatcccg gagtttgtcc agtttgctgg cgtgctggcg gattgcacgt
     6121 tagcggaaac tggcgctaaa gaggaactgc tccaacaagc actcgtcgcg caactggcac
     6181 atagtgaaca gcttgaaggt gtgcaactgc cggagccgga tgaaccttca gcacgtcacg
     6241 ccttacccgc caacgaaccg cgcattgtgc tgaacaatgg cgtggtttct tataacgatc
     6301 gccccattct taataacctt agctggcagg tgaatccagg tgaacactgg caaattgtcg
     6361 ggccaaatgg tgcaggaaaa tcgacgttat taagcctggt tactggcgat catccgcaag
     6421 gttacagcaa cgatttgacg cttttcggac gacgtcgcgg cagcggcgaa accatctggg
     6481 atatcaaaaa gcatatcggt tacgtcagca gtagtttgca tctggattac cgggtcagca
     6541 ctaccgtgcg taatgtgatt ctttctggct attttgattc gattggcatt tatcaggccg
     6601 tttcggatcg ccagcaaaaa ctggtgcagc agtggctgga tattctcggc attgataaac
     6661 gtacggctga cgctccgttc catagtcttt cctggggaca gcagcatctg gcgctgatcg
     6721 tccgcgcact ggtgaaacat ccgacgttgc ttattctcga tgaaccacta caggggcttg
     6781 atccgctcaa tcgccagctt atccgccgtt ttgttgatgt gctgattagc gaaggtgaaa
     6841 cgcaattgtt gtttgtttcg caccacgctg aagatgcgcc tgcctgtatt acccatcgcc
     6901 ttgagttcgt gccggacggt ggactctatc gctatgtgct gacaaaaata tattgagtcg
     6961 gtagtgctga ccttgccgga ggcggcctaa gcgccctctc cggccaacgg ttcgacgcat
     7021 gcaggcatga aaccgcttct tttttcagat aaaaagcgca atcattcata aaccctctgt
     7081 tttataatca cttaatcgcg cataaaaaac ggctaaattc ttgtgtaaac gattccacta
     7141 atttattcca tgtcacactt ttcgcatctt tgttatgcta tggttatttc ataccataag
     7201 cctaatggag cgaattatga gagttctggt taccggtggt agcggttaca ttggaagtca
     7261 tacctgcgtg caattactgc aaaacggtca tgatgtcatc attcttgata acctctgtaa
     7321 cagtaagcgc agcgtactgc ctgttatcga gcgtttaggc ggcaaacatc caacgtttgt
     7381 tgaaggcgat attcgtaacg aagcgttgat gaccgagatc ctgcacgatc acgctatcga
     7441 caccgtgatc cacttcgccg ggctgaaagc cgttggcgaa tcggtacaaa aaccgctgga
     7501 atattacgac aacaatgtca acggtactct gcgcctgatt agcgccatgc gcgccgctaa
     7561 cgtcaaaaac tttattttta gctcctccgc caccgtttat ggcgatcagc ccaaaattcc
     7621 atacgttgaa agcttcccga ccggcacacc gcaaagccct tacggcaaaa gcaagctgat
     7681 ggtggaacag atcctcaccg atctgcaaaa agcccagccg gactggagca ttgccctgct
     7741 gcgctacttc aacccggttg gcgcgcatcc gtcgggcgat atgggcgaag atccgcaagg
     7801 cattccgaat aacctgatgc catacatcgc ccaggttgct gtaggccgtc gcgactcgct
     7861 ggcgattttt ggtaacgatt atccgaccga agatggtact ggcgtacgcg attacatcca
     7921 cgtaatggat ctggcggacg gtcacgtcgt ggcgatggaa aaactggcga gcaagccagg
     7981 cgtacacatc tacaacctcg gcgctggcat aggcagcagc gtgctggacg tggttaatgc
     8041 cttcagcaaa gcctgcggca aaccggttaa ctatcatttt gcaccgcgtc gcgagggcga
     8101 ccttccggcc tactgggcgg acgccagcaa agccgaccgt gaactgaact ggcgcgtaac
     8161 gcgcacactc gatgaaatgg cgcaggacac ctggcactgg cagtcacgcc atccacaggg
     8221 atatcccgat taaggaacga ccatgacgca atttaatccc gttgatcatc cacatcgccg
     8281 ctacaacccg ctcaccgggc aatggattct ggtttcaccg caccgcgcta agcgcccctg
     8341 gcagggggcg caggaaacgc cagccaaaca ggtgttacct gcgcacgatc cagattgctt
     8401 cctctgcgca ggtaatgtgc gggtgacagg cgataaaaac cacgattaca ccgggactta
     8461 cgttttcact aatgactttg cggccttgat gtctgacacg ccagatgcgc cagaaagcaa
     8521 cgatcctttg atgcgttgcc agagcgcgcg cggtaccagc cgggtgatct gcttttcacc
     8581 ggatcacagt aaaacgttgc cagaactgag cgttgcggca ttgacggaaa tcgtcaaaac
     8641 ctggcaggag caaaccgcag agctgggaaa aacgtacccg tgggtgcagg tctttgaaaa
     8701 caaaggtgcg gcgatgggct gctctaaccc gcatccgcac ggacagattt gggcaaatag
     8761 cttcctgcct aacgaagctg agcgcgaaga ccgcctgcaa aaagaatatt ttgccgaaca
     8821 gaaatcacca atgctggtgg attatgttca gcgcgagctg gcagacggta gccgtaccgt
     8881 tgtcgaaacc gaacactggt tagccgttgt gccttactgg gctgcctggc cgttcgaaac
     8941 gctactgctg cccaaagccc acgttttgcg gatcaccgat ttgaccgacg cccagcgcag
     9001 cgatttggcg ctggcgttga aaaagctgac cagtcgttat gacaacctct tccagtgctc
     9061 cttcccctac tctatgggct ggcacggcgc accatttaat ggcgaagaga atcaacactg
     9121 gcagctgcac gcgcactttt atccgcctct gctgcgctcc gccaccgtac gtaaatttat
     9181 ggttggttat gaaatgctgg cagagaccca gcgagacctg accgcagaac aggcagcaga
     9241 gcgtttgcgc gcagtcagcg atatccattt tcgcgaatcc ggagtgtaag aaatgagtct
     9301 gaaagaaaaa acacaatctc tgtttgccaa cgcatttggc taccctgcca ctcacaccat
     9361 tcaggcgcct ggccgcgtga atttgattgg tgaacacacg gactacaacg acggtttcgt
     9421 tctgccctgc gcgattgatt atcaaaccgt gatcagctgt gcaccacgcg atgaccgtaa
     9481 agttcgcgtg atggcagccg attatgaaaa tcagctcgac gagttttccc tcaatgcgcc
     9541 cattgtcgcg catgaaaact atcaatgggc gaactacgtt cgtggcgtgg tgaaacatct
     9601 gcaactgcgt aacaacagct tcggcggtgt ggacatggtg atcagcggca atgtgccgca
     9661 gggtgccggg ttaagttctt ccgcttcact ggaagtcgcg gtcggaaccg tattgcagca
     9721 gctttatcat ctgccgctgg acggcgcaca aatcgcgctt aacggtcagg aagcagaaaa
     9781 ccagtttgtt ggctgtaact gcgggatcat ggatcagcta atttccgcac tcggcaagaa
     9841 agatcatgcc ttgctgattg actgtcgttc actggggacc aaagcagttt ccatgccgaa
     9901 aggtgtggct gtcgtcatca tcaacagtaa cttcaaacgt accctggttg gcagcgaata
     9961 caacacccgt cgtgaacagt gcgaaaccgg tgcgcgtttc ttccagcagc cagccctgcg
    10021 cgatgtcacc attgaagagt tcaatgctgt tgcacatgag ctggacccaa tcgtggcgaa
    10081 acgcgtgcgg catatcctga ctgaaaacgc ccgcaccgtt gaagctgcca gcgcgctgga
    10141 gcagggcgac ctgaaacgta tgggcgagtt gatggcggag tctcatgcct ctatgcgcga
    10201 tgatttcgaa atcaccgtgc cgcaaattga cactctggta gaaatcgtca aagctgtgat
    10261 tggcgacaaa ggtggcgtac gcatgaccgg cggcggattt ggcggctgta tcgtcgcgtt
    10321 gatcccggaa gagctggtgc ctgccgtaca gcaagctgtc gctgaacaat atgaagcaaa
    10381 aataggtatt aaagagactt tttacgtttg taaaccatca caaggagcag gacagtgctg
    10441 aacgaaactc ccgcactggc acccgatggt cagccgtacc gactgttaac tttgcgtaac
    10501 aacgcaggga tggtagtcac gctgatggac tggggtgcga ctttactttc agcccgtatt
    10561 ccgctttccg atggcagcgt ccgcgaggcg ctgctcggct gtgccagccc ggaatgctat
    10621 caggatcagg ccgcgtttct gggggcctct attggtcgtt atgccaaccg catcgccaat
    10681 agccgttata cctttgacgg tgaaaccgtg accctttcgc caagtcaggg cgttaaccag
    10741 ctgcacggcg gcccggaagg gttcgacaaa cgtcgctggc agattgtgaa ccagaacgat
    10801 cgtcaggtgc tgtttgccct gagttcagat gatggcgatc agggcttccc gggtaatctc
    10861 ggcgcaacgg tgcaatatcg tctgaccgac gataaccgta tctccattac ttatcgcgcc
    10921 acagttgata aaccttgccc ggtgaatatg actaatcacg tctatttcaa tcttgacggc
    10981 gagcagtctg acgtgcgcaa tcacaagttg cagattctgg cggacgaata tctgccggtt
    11041 gatgaaggcg gcattccgca cgacggcctg aaatctgtcg ccggaacgtc ttttgatttc
    11101 cgcagcgcca aaatcatcgc cagtgagttt cttgccgacg acgatcagcg caaagtgaaa
    11161 ggttacgatc acgcattctt gttacaggcc aaaggcgatg gcaagaaagt ggcggcgcat
    11221 gtctggtcag cagatgaaaa attgcagctg aaggtctaca ccaccgctcc ggctctgcaa
    11281 ttctactccg gcaacttcct cggcggcaca ccgtcgcggg gaacagaacc ttacgccgac
    11341 tggcaagggc tggcgttgga aagcgagttt ctgccggaca gcccgaacca ccctgaatgg
    11401 ccgcaaccgg actgcttcct gcgtcctggc gaagagtatt ccagcctgac ggaatatcag
    11461 tttattgctg agtaatgtta agccctcgtc atgagggctt tatctcatat tgttcaaatc
    11521 accagcaaac accgacatat ttgcaactca atattcacaa caaccttaca ctgcgccact
    11581 attttcgcta tggttatgcg taagcattgc tgttgcttcg tcgcggcaat ataatgagaa
    11641 ttattatcat taaaagatga tttgaggagt aagtatatgg ctgtaactaa gctggttctg
    11701 gttcgtcatg gcgaaagtca gtggaacaaa gaaaaccgtt tcaccggttg gtacgacgtg
    11761 gatctgtctg agaaaggcgt aagcgaagca aaagcagcag gtaagctgct gaaagaggaa
    11821 ggttacagct ttgactttgc ttacacttct gtgctgaaac gcgctatcca taccctgtgg
    11881 aatgtgctgg acgaactgga tcaggcatgg ctgcccgttg agaaatcctg gaaactgaac
    11941 gaacgtcact acggtgcgtt gcagggtctg aacaaagcgg aaactgctga aaagtatggc
    12001 gacgagcagg tgaaacagtg gcgtcgtggt tttgcagtga ctccgccgga actgactaaa
    12061 gatgatgagc gttatccggg tcacgatccg cgttacgcga aactgagcga gaaagaactg
    12121 ccgctgacgg aaagcctggc gctgaccatt gaccgcgtga tcccttactg gaatgaaact
    12181 attctaccgc gtatgaagag cggtgagcgc gtaatcatcg ccgcacacgg taactccctg
    12241 cgtgcgctgg tgaaatatct tgataacatg agcgaagaag agattcttga gctgaatatc
    12301 ccgactggcg tgccgctggt gtatgagttc gacgagaatt tcaaaccgct gaaacgctat
    12361 tatctgggta atgctgacga gatcgcagcg aaagcagcgg cggttgcaaa ccagggtaaa
    12421 gcgaagtaaa cgtcattcgt ttaaaatgag aaagccgact gcaagtgagt cggctttttt
    12481 gttgctaaca atggagcaca ttgcctgatg cgacgctgcg cgacttatca ggcctgtggt
    12541 gattcatcgg atacgccact ctgacggcgc atccgacaat taaaccttac ccgcgacgcg
    12601 cttttactgc attcgccagt tgacgtaaca gagcatcggt atcttcccag ccgatgcagg
    12661 catcggtgat gctcttaccg taggccagcg gctccccgct ctcgaggctc tgattgcctt
    12721 ccaccagatg gctttccacc atcacgccaa taatggcctt ttcgccaccg gcaatctgct
    12781 ggcaaacgtc agcacaaaca tccatctgct ttttgaattg tttggacgag ttagcatggc
    12841 tgaaatcgat catcacctgt gctggcaggc ctgctttgtt cagcccttct ttcacttcag
    12901 caacgtgctt cgcgctgtag ttaggctctt taccgccgcg cagaatgata tggcaatcgc
    12961 cgttaccgct ggtattcaca atcgccgaat gcccccattt cgttacggac aggaagcagt
    13021 gcggcgcacc ggcggcatta atggcatcga tagccacttt aatcgtaccg tcggtgccat
    13081 ttttgaagcc gactggacaa gaaagccctg atgccagttc gcggtgcacc tgcgattcgg
    13141 tggtacgtgc gccaattgcg ccccagctca tcaggtcagc gagatattgt ggggtgatca
    13201 tatcgagaaa ctcacccgcc gctggcagac cgctgtcgtt aatatcaagc agcaatttac
    13261 gggctatacg aagaccgtcg ttgatctgga agctgttatc catatgcgga tcgttaatca
    13321 gccctttcca gcccaccgtg gtacgcggct tttcaaaata gacgcgcatt acgatttcca
    13381 gctcatcttt cagctcttca cgcagcgcca gcaagcgagt ggcatactct ttagccgcga
    13441 caggatcatg aattgagcac gggccaatca ccaccaacag gcgatcatca ttacctttca
    13501 ggatcttatg gatcgctttt cgggcatggg caaccgtatt cgcggcattt tcagtagcgg
    13561 ggaatttttc cagcaatgcg acaggaggaa gtaactcttt gatttctttg atgcgtaaat
    13621 cgtcgttctg ataattcatg tctgttccag tgttgccata cttatcttag tgaatgcaat
    13681 acttccaatc tatatcttcc gtcagaatgt gtaaacgggg ttttacatta tgaacggatt
    13741 aatcctggaa ttagcaagaa aaacgccaga ttgtcgcgaa aaacgagatc tctcctacaa
    13801 tttctaactg taactccttt gtttgttaat tatttcaaga ttctctgctg cgtttcataa
    13861 actggctgaa atcttaaacc aatgccttat attcacctgc aaatgcactg ttggaagagg
    13921 ttatccgaca taacgaccat aacaggagca tcctatgaaa atgacaaaac tggccacatt
    13981 atttctgact gccactctaa gccttgccag cggtgccgca ctggctgccg atagcggagc
    14041 gcaaactaat aacggccagg caaacgccgc aactgatgcg ggccaggtag cccctgacgc
    14101 ccgtgaaaat gtcgcgccaa ataacgtcga caataacggg gtaaataccg gttctggcgg
    14161 cacaatgctg cattcggatg gttcttcaat gaacaatgac ggaatgacca aagatgaaga
    14221 gcacaagaac accatgtgca aagatggtcg atgtccggat atcaataaaa aggtacaaac
    14281 cggtgatggc atcaataatg atgtcgatac caaaaccgac ggtaccacgc agtaaccctg
    14341 caaaatagcc aataatggga gagcggagtc tctccctttt aatttttcac ttctaaaagc
    14401 agtatgatgt cataaagtta agtgagaata attaagggat gactcgtcat ggcgcactca
    14461 cactcacaca cgtcctcaca cctgccagaa gataataatg ctcgtcgctt gttgtatgct
    14521 ttcggcgtga ctgccgggtt tatgctggta gaagtcgttg gtggttttct ttctggttct
    14581 ctggcattgc tggccgatgc gggtcatatg ttgaccgata ctgccgccct gcttttcgcc
    14641 ctactcgccg tgcaattttc acgtcgtcct cccaccattc gccacacttt cggttggcta
    14701 agactgacca cgctcgcggc gtttgtgaat gccatcgccc tcgtggtaat taccattttg
    14761 attgtctggg aggcgataga acgcttccgc acgccgcgtc cggtcgaggg cggcatgatg
    14821 atggcaattg ccgtggctgg gttgctggca aatatacttt ctttctggtt acttcatcac
    14881 ggcagcgaag agaaaaacct caacgtacga gcagcggcat tgcatgtgct cggggacctg
    14941 ttgggttcgg ttggggctat tattgccgcg ttgattatta tctggaccgg ctggacacct
    15001 gctgacccca ttctctcgat agtggtgtcg cttctggttc tgcgtagcgc gtggcgactg
    15061 ttgaaagata gcgtgaatga attacttgaa ggtgcaccgg tatcgctgga tatcgctgaa
    15121 ctgaagcgtc gtatgtgccg ggaaatcccg gaagtccgca atgtgcacca tgtacatgta
    15181 tggatggtag gtgagaagcc ggtgatgacg ctgcatgtgc aggtgatccc gccacacgat
    15241 cacgatgcct tgttggatca gatccaacac tacctgatgg ctcactatca gattgagcac
    15301 gccaccattc agatggaata tcaaccttgt catgggccag actgccacct gaatgaaggg
    15361 gtgtctggcc attcacatca tcaccattaa tgggacagcg cgcatgagcc tctttcacgt
    15421 gcgctgttga tccacatccg actgccgttg agcgcaataa aggtcaggat gatgtactcc
    15481 agagacatgg cgtaaacgcc ctgaagtgca aaaataacga cgctaatcac gttaataatc
    15541 acccacaaca gccagttttc cacatactta cgcgtcatca gaagcattgc cacgatagat
    15601 aacaccatca tgcatgaatc ccagaacggg aaagcgtccg gttgcagttc aggcatcaca
    15661 acctgtaatc ctaatgcttg catgatcatt actgccacgc gggtcaaaaa tgcaaacacc
    15721 ggattgataa ataccgtcat cagaccaatc gaaacaacgc aaaccgccaa ccagctgagc
    15781 gccttcggca atggtaacca gcgaattttc aactccgcct cgttctgact ggtttgtcgc
    15841 gaccacgcat accaaccgta aatattcgcg gcaaagaaaa acacctgtaa tagcaggctg
    15901 gcatacagct gaatctgaaa gaaaataatg ccaaacaagg tgacgttgat caggccaaag
    15961 aagtagttgc tgatcttctc cagactggca aggccaatac acagcaaccc ggcgatcgtg
    16021 cctaccgctt cgatccatga gagatcataa ccgcctgctc ctattggtat atgtaccagg
    16081 atattctgca cactaaaaaa atccatcttt cccccaaagc gtaacgttac gccttattat
    16141 tcgttatcca cgtagtgtag ccgcaaaatc cagcatacga ttgagcggca ccagcgccct
    16201 ctctcgcagc ctttcatcaa catgaacctc gtgattgctt ccttcctgtt ctaatgcctc
    16261 tgcgatggcc tgaaggccat tcatggccat ccacggacaa tgcgcgcagc tgcggcaggt
    16321 tgcaccctca cctgcggttg gtgcttccag taactcttta tctggcaccg cctgctgcat
    16381 tttgtagaaa ataccccgat cggttgccac aataagcctc tgatgtggca atgttttcgc
    16441 agcagcgatc agttgactgg tggaaccgac cgcatccgcc atatcgacaa tagcttgtgg
    16501 tgattctgga tgcaccagta tggcagcatc cgggtattct tcttgcaagc gggttaacgc
    16561 ctgagtctta aattcatcat gcacaataca ggcaccctgc cagcatagaa tgtctccacc
    16621 cgtctgtttt tgcacgtaac gccccagatg tttgtcgggt gcccagatga ttttttcacc
    16681 caaactatca agatgatcaa taagttcgac ggcaatgctt gaagttacca cccaatctgc
    16741 gcgcactttt accgcagcag aagtgttggc gtagacgacg acagtacgat cgggatgggc
    16801 atcgcaaaat gcgttaaatt cttcaacagg gcagccgaga tccagtgaac attcagcctg
    16861 aagtgtcggc atcagaattg ttttttccgg actgagaatt ttggcggttt ctcccataaa
    16921 tctcacccca gcgactaaca aagtagaagc gggatgcttt gcaccgaagc gcgccatttc
    16981 cagagaatca gaaatacagc caccggtttc ttctgccagt tgttgaattt cgggatcggt
    17041 atagtagtgg gcaaccatca ccgcattacg ttcttttagc agacgtttta tcttctcgcg
    17101 gtaatacgct ttttcatcaa tgcttaacgg cgtcggcttc ggggggaaag gataaatcgc
    17161 cgtgtctgga tcaaacatta cgctcatctt accatctcgt tttacaggct taacgttaaa
    17221 accgacatta gcgtaatatt cgctgttatc ggtgtaattt gttttatatg ctaaacaaga
    17281 tagtcgaatg gtggggaaaa gtcactcgaa ttacgcctaa ttccaccgac gtagagttgc
    17341 ttgcacagta agctctgacg atgtcatcag gtttacaaag tgaaattgag gatgcctgaa
    17401 tagcaaaaaa gcgcctttag ggcgcttttt tacattggtg ggtcgtgcag gattcgaacc
    17461 tgcgaccaat tgattaaaag tcaactgctc taccaactga gctaacgacc catacgggtg
    17521 ttacctgaaa gatttctact cggggccaat ctttaagatt ggtgtgtcgt gcaggatgac
    17581 tcgcttcgct tgccctacgg gccgttgctg gcgcaacgtt atccttcacg cttaacatct
    17641 gagtttgatg ttaaaattgg tgggtcgtgc aggattcgaa cctgcgacca attgattaaa
    17701 agtcaactgc tctaccaact gagctaacga cccgagtggt gggtgatgac gggatcgaac
    17761 cgccgacccc ctccttgtaa gggaggtgct ctcccagctg agctaatcac ccgatactgc
    17821 gctggatact acaaactact tccaccgaac ccatcgtaat tagtggtggg tcgggcagga
    17881 tgactcgctt cgctcgccct acgggccgtt gctgacgcaa cgttatccta cacgcttgac
    17941 atctgtcttc gatgctaaaa ctggtgggtc gtgcaggatt cgaacctgcg accaattgat
    18001 taaaagtcaa ctgctctacc gactgagcta acgacccggt ggtgggtgat gacgggatcg
    18061 aaccgccgac cccctccttg taagggaggt gctctcccag ctgagctaat cacccaatac
    18121 tacgctggat actacaacta actatgttag tggtgggtcg tgcaggattc gaacctgcga
    18181 ccaattgatt aaaagtcaac tgctctacca actgagctaa cgacccactt tttcgttgct
    18241 ttcggtttgt ttgatatccc gtggcaacgg cggcatatat tactgatttc agacttgagc
    18301 gcaacaaaaa tttcgatgca gatcactcaa ctgcttatga ttcgcacgac acgaccagaa
    18361 ataatgcaac ttctggtcgt gtgttatgca ttacatcgcg ttcagacgtt tttgtgcctg
    18421 tttagcgcca tcagtaccag ggtatttact gataacctgc tggtatacgg ctttcgcttt
    18481 tgcggtgtca cctttgtcct gcatgatgac gccgacttta aacatcgcat cagcagcctt
    18541 tggtgacttc ggatagtttt tcactaccga agcaaaatag tacgccgcat catctttttt
    18601 acccttgttg tagtttaact gacccagcca ataattggcg tttggcaggt aagttgaatc
    18661 agggtaattt ttgatgaaat tctgaaatgc caccattgcg tcatcctggc gggatttatc
    18721 ctgcaccagc gcaatagctg cattgtaatc cgtgtttgca tcgccgcttt tcaccggcgc
    18781 gccagcattc gcagtaccag catcagctgt cggcgtcgtt gatgccgccg caccgctttg
    18841 atcgctgctg gttgattgcg ccgctgcacc accgctgctg aggctgtcga tctgcaacag
    18901 gatctgcttt tgccgctcca cgacctgatt cagttgatac tgattttcct gaatctgacc
    18961 acgcagggaa tcaatatcgg attgattatc agaaagttgt tgctggagtt gggttaaaag
    19021 ctggctgtga gcattagaaa tacgctcaag ttgagtgacg cggtcttcga ccgagcctga
    19081 gccgacacta ctgattggtg cctgagcaaa agcggcccag ggggccgcta taccaaccag
    19141 taacgacaga ctcaatagtt gatgtctgaa gttactgctc atgcaattct cttagtaaac
    19201 cagtaccgca cgacggtttt tggagtatgc cgcttcgtca tgacccagta ctgcaggttt
    19261 ttctttaccg taagaaacga tggagatctg gtctgcagaa acgcctttac cctgcaggta
    19321 catcttaacg gcgttcgcac gacgttcacc cagggagatg ttgtattccg gagtaccacg
    19381 ttcgtccgcg tgaccttcta cggtgacttt gtaagacggg ttgctacgca ggaagtttgc
    19441 atgtgcatcc agcatttgag cgaagtcaga acggatatcg tacttgtcca gatcgaagta
    19501 aacgatgttg ttctgctgca gctgttgcat ttgcagacga gcctgctctt cggaagacat
    19561 gttgccgttg ccgccgttcg catccatacc agtgccggca cccagcatgc cttcgctgcc
    19621 gtcattgctg gcgttcttgt tggaagaaca tgccgcaatt gccataacag gcagagcaat
    19681 catcagccct ttcagcactt tgttcagttg catttcaatg attcctttac tattcaatta
    19741 attattatca cagatacggc gaccaggcag ggaatttgac ctgtccatca gttgccggaa
    19801 gacgcgcttt gaaacgccca tctgtagaaa ccaaattcag cacggatccc atcccctgag
    19861 aagagctgta gattaccata gtgccattag gtgccagact tggcgtttca tccaggaacg
    19921 tggacgacag aacttgtacg cctcccgttg ccagatcttg tttggcaatg tgctgctgcc
    19981 caccattgga gctgaccatt accataaatt taccgtcgct gctgacatcc gcatcctggt
    20041 tctgcgaacc ttcccaggta atacgttgtg gcgcaccgcc gttgatattc actttataaa
    20101 cctgcggacg accggcctgg tcagaagtaa atgccaggtt ctggctatcc gggaaccagg
    20161 tcggttcggt attgttactg cgaccatcag tcacctggcg gatctgacca gaagccaaat
    20221 ccattacgta caggttcaga ctaccggttt tcgacaaggc gaatgccagt ttgctgccgt
    20281 ctggcgagaa tgcaggtgca ccgttgtgac gcgggaatga agccacctga cgtacagcgc
    20341 catttgccag cgtctgaata accagcgcgg aacgaccgct ttcgaaggtc acataagcca
    20401 gtttagaacc gtctggtgac cacgccggag acatcagcgg ctgcggtgaa cggtgaacga
    20461 caaactggtt gtaaccgtca tagtcagata cgcgcagttc atacgggaac tgaccgccgt
    20521 tggtctgaac aacgtaggca atacgggtac ggaacgcacc tttaatgccg gtcagttttt
    20581 caaacacttc atcactggcg gtatgaccag cataacgcag ccactgcttg ttcactttgt
    20641 acgagttctg agcaagtaca gtacccggtg cgccgccagt gtcaacaagt tgataagcaa
    20701 cattgtaaga accatccgga ttcggagtga cctgaccgac aactacagcg tcaatgccca
    20761 gtgcggacca tgcagatggt tgtacttcct gcgcactacc cggctgctgt ggcagacgag
    20821 cgcgatctaa cggattaaat ttaccgctgt tacgcaagtc agcagcaacg atgccgccaa
    20881 tatcttcagg tgccgcacca ggccccgccc actggaaagg aacaacacca ataggacgac
    20941 cggaatctac accgctgtcg atcacaatgc ggacttcagc atgcagaact gatgcccaca
    21001 gtatgagaaa accaaatgct actcgtaatg cctgcttcat catatctccc ttatctggac
    21061 cgatggccca cgataattta gcagaatgtt aacaaactaa aatacacaaa actaccagaa
    21121 ccccgtggca accggtgcct gatgttgacc gtccgaacag tcaacatcgc gattacggtt
    21181 tgaagtccaa tggcgcgttt ttgaacactt catatactgc ctggcttggt ggtttcggga
    21241 tcttcgcaag tttagctgct gccaacgcag cctgacaaag tgcgggatcg ccaccttcag
    21301 gtttgatatc cagtaacata ccatcgggtg ccagttttat gcgcagcgta caggttttgc
    21361 ctgcatagga cgatgcgtca tagaacttac tttcgatagc agatttaatc tgcccggcat
    21421 agttattgat atcggcccct gatgcgccat tgtttttagt attaccactc ccggcaggcg
    21481 aagcattgtt ccctttcgcc cctccccccg ttttcggtgc attcttacca gagcttagct
    21541 caccgaaaat atcatctgcc tctgcggcgg ctttttctgc cgctgctttc ttatcagctg
    21601 ctgccttttc agcagccgct ttttctgctg cttttttgtc ggctgcagct ttctctgctg
    21661 ccgctttctt ctcagcttct gctttggctt tttcagcagc ttcagttgcc gctttctttc
    21721 ttgcttcagc tgcagctgct tctgccgctt ccgctttctt cttcagtgcc gcagcggctg
    21781 cctcggcttt tttctgcgct gcggctttgg cggcttctgc ttctgctttt ttctttgcgt
    21841 ctgcagccgc tttcttcgct gcttcttccg cagctttagc atctgcttcg gccttcgctt
    21901 tagcatctgc cgccgctttc gctgccgcct cttcagcttg cttctgcttt aactcggcct
    21961 gttttgcagc ttcttcagcc tgctttttct gctcctgagc cgctaaccgc tctttctcaa
    22021 gttgcttcag gcgttcctgt tcagccgctt gtttctcacg cagttcttca gcagcctgct
    22081 gttccttcat cttgcgctgt tcatcagaac gcttcgcgct tgattcctgg ctttgcatgc
    22141 gtttgtactg ctcaactacc gcacctgaat caaccatgac agcgtcgatg gacgaaccac
    22201 cgccgcctcc ggctgaagct tctatattct catcgaacga actccagatc agcgccgcaa
    22261 ataagatgac atgcagcact gctgaaataa ttatcgcccg cttgagcttg tcgttttgtt
    22321 cggttgcctt tgacactctc ggtttccaaa aactgttcgc ctgttacccg ctctctttca
    22381 agcaagggaa acgcagatgt ttagataggc tgcgtcatta aaccaaccga tttcacaccc
    22441 gcactatgta acaagttcag tgctttaatt atttcatcgt aaggcacatc ttttgcgcca
    22501 ccgatcagaa agaccgtttt cgggttggcc ttgaaacggc tggacacttc cgccaccacc
    22561 tgctctggtg gtaaacgctc caggcgatct ttatcaacca ccacggtgta ctgaccaata
    22621 ccagacactt caacaatcac tggcggatta tcgttactgc tcaccgcctg tgattcagta
    22681 gcgtctggca gatcgacctc cacgctctgg gtgatgatgg gcgctgtcgc catgaagatc
    22741 agcaacagca ccagcagtac gtccagcaac ggtacaatgt tgatttcgga cttaagttcg
    22801 cgacgacctc gtccacgcgc tctggccatg acttacccct tattgctctc gctaacggta
    22861 aacgcctggc ggtgcagaat cgcggtaaac tcttccataa agttgtcgta attcagttcc
    22921 agtttgttta cgcgctggtt gaggcggttg taggccataa ctgccgggat agcggcaaac
    22981 agaccaattg cagtcgcaat caacgcttct gcgataccgg gcgcaaccat ttgcagtgtt
    23041 gcttgtttta ccgccccgag ggcgataaag gcgtgcatga tcccccagac cgtaccaaac
    23101 agaccaatat acgggctgat ggagccaacc gtaccgagga acggaatgtg cgtttccaga
    23161 ttttcaagtt cacggttcat ggagatacgc atagcacgcg acgccccttc cactacggct
    23221 tccggcgcat ggctattggc acgatgcagg cgcacaaact ctttgaaccc gctgtaaaat
    23281 atttgttccg aaccagtcag attatcccgt ttcccctgac tctcttgata gaggcgagag
    23341 agttcgattc cagaccagaa tttatcttca aacgcttcgg cttcgcgcgc cgctgcgtta
    23401 agaatacggg tccgctggat aataatggcc caggatgcga ttgaaaaacc aatcaaaatc
    23461 aaaatgataa gtttaaccag aaggctagcc ttcaggaaca aatcaaggat attcatgtca
    23521 gtcactgctt aaactccgcg acaatagact tgggaagcgc acgaggcttc attttgagtg
    23581 ggtcaacgca aacaaccaga acctctgctt cattcagcaa agtattctcg gcgttgacaa
    23641 tacgttgcgt gaaaaccaaa gaggtgccac gcattgatgt tatttcagtc tgtatttcga
    23701 gcatatcgtc gagccgcgca ggtgcgtaat attccaccgt cattttacgt accacaaagg
    23761 caacgcgttc agccatcagc gcctgctgac tgaagtgatg atgacgcagc atctctgtgc
    23821 gtgctctttc ataaaaagcg acgtaactgg cgtggtacac cacaccaccg gcatcggtat
    23881 cttcatagta gacgcgaacc agccatcgaa acagcgttgt attcacttta catcccggta
    23941 atgcaacaaa agttagagct tttaaacgct gctactatac gcgcgcgatt gaggtttggg
    24001 aatgagggca agttaaggga gcgtaaaaat ttatgggcct ggagcggccc ataatttttt
    24061 aaagagaatt ctgatttaaa agaagaagaa aatcagcccg ataatgagaa caatatcggc
    24121 aagcaatggg caaaaaatcc cttgccaaag aaccttctgc ggacgaaagc ccacgccgtg
    24181 aatcacacca gcacagacgg cccacatcag caataaacca tgccagattt ccagttcact
    24241 ggtcttcgcg gcaaaacgag atgggtccca aaacatacat cctgctaaca gaagcgccat
    24301 cacgaaggaa agcgcccgca gggggcgctt gtccattacc gcatacaagg tcgcgataat
    24361 cttactcatc agatgtcttc ttgaccggct ttgcctgatt cgacgtgttc aagcgccagc
    24421 gcggtgatta ccccaaacga acaggcaaga agcgttccca gaatccatgc gaaataccac
    24481 atttttagct ccttacttag tacagagagt gggtgttacg ttcaatatct tctttggtga
    24541 tacgaccgaa cattttccag taacaccagg cggtgtagag cagaatgatc ggtaccagaa
    24601 ccaccgcaac ccaggtcatg acgttaagcg tcagctggct ggaagttgca tcccacattg
    24661 tcagacttgc gttcatcatg gtgctggacg gcatcacaaa cgggaacatt gcgataccgg
    24721 ctgtcaggat gatgcaggcc agcgtcaggg aggagaacac aaacgcccac gcggctttat
    24781 ccatacgtgc agtcaggatg gtcagcagcg gcagaaccac acccagtgcc ggaatagccc
    24841 acagaattgg cgtgttgttg aagttaacca gccatgcgcc agcttcacga accacttctt
    24901 tattcagtgg gttagaggct gcgtaatggt ccattgtcga tttcacgaca taaccatcga
    24961 taccgtacat cacccatacg ccagccagtg cgaaacagac cagtgtcacc agcgcagcca
    25021 cctgagccgt tgcacgggta cgcaggtgca gttcacccac ggtacgcatt tgcagatagg
    25081 ttgcgccctg agtaatgatc atccctacgc tcaccacgcc tgccagcagg ccgaacgggt
    25141 taagcaactg gaagaagtta ccggtgtagt acagacgcag atattcatca acgttgaacg
    25201 gtacgccctg caacaggtta ccgaacgcaa caccaattac cagcggcgga acgaagctac
    25261 caatgaagat gccccagtcc cacatgttac gccagcgggt ttcttcaatc ttggagcggt
    25321 agtcaaaacc gaccggacgg aagaacaaag acgccagcac gaggatcatc gccacataga
    25381 agccggagaa cgcagcggca tagaccatcg gccaggcagc aaagagtgcg ccgcccgcgg
    25441 tgatcagcca aacctggtta ccgtcccagt gtggtgcaat ggagttaatc ataattcgac
    25501 gctcggtgtc gttacgaccg aggaaacggg tgagcatgcc cacccccatg tcgaaaccgt
    25561 cagtgactgc aaaaccaatc agcagaacgc caaccagcag ccaccagata aaacgcaata
    25621 cttcataatc gatcatttga cgactcctgt cttagcgtgc cggctgagta gtcgtggaag
    25681 actgctcaaa gtgatagcga ccggttttca ggctgcttgg gccgaggcgt gcaaatttga
    25741 acattaagaa caattctgcc accaggaaca gggtatacag gccgcaaatc agcaccattg
    25801 agaagatgag atcgcctgcg gtcagtgacg aattcgccac agctgtcggc agcacttcac
    25861 cgatagccca cggttggcgg ccatattcag ccacgaacca gcccgcttct acagcaatcc
    25921 acggcagcgg aataccgtac agcgcggcgc gcagcagcca ttttttctcg ccaatgcggt
    25981 tgcggatgac actccagaaa gagagcgcga tgattgccag cagcaggaag ccacacgcca
    26041 ccataatacg gaacgcgaag tacagcggcg ctacacgcgg aatggagtct ttggttgcct
    26101 gttgaatctg cgcttcagtc gcatcagcca cgtttggcgt atagcgtttc agcagcagac
    26161 cgtaaccgag gtctttcttc atgctattga actggtcacg aaccgcctgg tcggtagaac
    26221 cagaacgcag ttgttcgagc agagagtacg ccttcatccc gttacgaatg cgttcttcat
    26281 gctgcaccat cagctctttc aggccgataa ccggggtatc cacggaacgc gttgcaatga
    26341 tgcccagtgc gtaagggatc tgaatcgcaa atttgttcgt ctcctcttcc tgatcaggaa
    26401 tgccgaacag agtaaaggca gcaggcgcag gttgcgtttc ccactcggct tcaatagcag
    26461 ccagtttggt tttctgcacg tcgcccattt cgtagccgga ttcatcaccc agaacaataa
    26521 cagacagaac agcagccata ccgaagctgg cagcgatagc aaaggagcgt ttagcgaagg
    26581 cgaagtcacg acctttcagc atataccatg cgctgatacc gaggatgaac atcgcgccag
    26641 tcacataacc agacgctaca gtgtgaacga atttcacctg agcaaccggg ttaagcacca
    26701 gctcggagaa gctcaccatc tccatacgca tagtttcaaa gttgaaatcg gacgcgattg
    26761 ggttttgcat ccagccgttc gcaaccagaa tccacagtgc ggacaggttt gaaccgagcg
    26821 ccaccagcca ggtgacacac atatgctgaa ctttacccag acgatcccaa ccgaagaaga
    26881 acagacctac aaaggtggat tcgaggaaga aggccatcag accttcgatt gccagcggcg
    26941 caccgaagat atcccctaca tagtgggaat agtaagacca gttagtcccg aactggaact
    27001 ccatggtcag accggtagcc acacccagag cgaagttgat accaaacaac ttgccccaga
    27061 acttggtcat atctttataa atctgtttgc cggagaggac gtagaccgtt tccataatgg
    27121 ccagcaggaa cgccataccg agcgtcagtg gcacaaaaag gaagtggtac atcgcggtca
    27181 aggcaaactg taagcgcgac agttcgacta tatctaacat catgactcct tgctcatcgc
    27241 atgaagactc cgagagtgaa ccccgttaga aagggtcaca cgcatgcccc aatagaaatt
    27301 tgtttgaaca ctttcatcat accatgtgaa tgcacacaaa aacggcgtaa agaaaggttg
    27361 caaacatgtt aataaaaact caaattgatc ccacgtatat attacgccgc aaaatcctta
    27421 caataaacag gtttttgttg aagcaaattt gcatttttcg acggtgatca atttatagct
    27481 aaattaccgc ctttcagcca atttgatcga gaacaattta tctctttttg atgcccattt
    27541 ccaagactta tacattgata aatatcaatt cctacaaatt atgttaatca tgtttcaata
    27601 aggtaacttt agtgacattt atgtttaaaa tgtgtgagtt ataaggctga aattagtttc
    27661 ggttggcaat taaagataaa aagagacgaa gcaaaaacag cacggttgac cttaattctt
    27721 tttttggtca ctggctaata cgacgcagag tttcaggatt actaataaag gcataaatcc
    27781 acccccgccg atgttaacat ttaattaact tataattata ttataattaa ctcacccagg
    27841 gttattattt tgttaaaaat aaagccacat atacgtggct tgagagtgaa gataaacgca
    27901 aaattacctg atgcgctacg cttgccagtg tctacatcat ctctgcaata tattgaattt
    27961 gcctgctttt gtagaccgaa taaagcgttc atgccgtatc cggcatgaac aaagcgccct
    28021 ttgtcaacaa tctggccgcg catatgtggc ttcggtttga ttgctattca ggcaagccgg
    28081 taactgaacg tccgtgactg gccgggtaaa aaaggccccg atagatttga accttgattt
    28141 tcctcggtgg taatgtgttc atccatcatc gtttctgagc aagaaatcac ctcgcgactg
    28201 aaagcaacag tcgcatcaca ggttgctgat tcagccggat taaacagccg taaaatcact
    28261 tcttgtcggt cttcagcttt cttaagtgcg cttatcaggc atcccactgg gggcattttc
    28321 aacaaactat aactttccgg cacgttgaat ccggctttgt tgagcttcat cgcatcccat
    28381 gggattttgt tgtaacactg tactggagtc agccatgctc gcgcctgctg agctacacca
    28441 gcggcggttg gcgtaccggt ataactcaat aaacttaggc gacaagaaag cagaccacgt
    28501 agttgtgagt ccgggactgg cattttaatt cccgaaggcc gcccaggcct taaaagcaga
    28561 tcttctttgc ccagtaagcc cacgccacgc agcaacgtaa tggcaaaggt tttcttctct
    28621 tcaccgatga cttcaaattc acgtaaccct tcgctaaaga cagccatgcc gttacgccct
    28681 tcctgtaagg caacatagtt gagcatattc cataccggaa ccggcgcttc tttccagcct
    28741 tcttgctgcc agttgttcat tgcactgtcg ttcacggggc gcgttagcga accaaactgc
    28801 gtatctgcca gaacactgtc ggtgttaaaa ggtgtaggga ccaggacacg aaggcgatga
    28861 tcgtcagcct ggttatcaag gttgatatcc acatcaatac gcctgctgtt atgactaaga
    28921 gtgacaacca acaccacccc tactctgcca gtggattgcc gggcgctgcg ttctgacaaa
    28981 ttgagcggca ctgccatgtc atagcggata acagccctgc tctgccagac ttcatgaata
    29041 atatcgcatt gcggtttcgc gttcgctgcg gtaattaccc actcttcttt tgcgggtgaa
    29101 tagtcatatt catcaccatc atcagagct
//
LOCUS       DAJVUN010000038        28450 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.038, whole genome shotgun sequence.
ACCESSION   DAJVUN010000038 DAJVUN010000000
VERSION     DAJVUN010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28450
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.038"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(70..717)
                     /gene="ychE"
                     /locus_tag="OQQ76_001334"
     CDS             complement(70..717)
                     /gene="ychE"
                     /locus_tag="OQQ76_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YchE"
                     /protein_id="HCS1967890.1"
                     /translation="MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN
                     KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED
                     KQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALF
                     ALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN"
     gene            1195..3870
                     /gene="adhE"
                     /locus_tag="OQQ76_001335"
                     /gene_synonym="adhC"
     CDS             1195..3870
                     /gene="adhE"
                     /locus_tag="OQQ76_001335"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HCS1967891.1"
                     /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD
                     ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAE
                     PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA
                     GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP
                     VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG
                     KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH
                     EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA
                     RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN
                     MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
                     ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF
                     EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD
                     YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL
                     KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA
                     NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL
                     LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ
                     ILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA"
     gene            3994..4890
                     /locus_tag="OQQ76_001336"
                     /pseudo
     CDS             3994..4890
                     /locus_tag="OQQ76_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904641.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
     gene            complement(5172..5789)
                     /gene="tdk"
                     /locus_tag="OQQ76_001337"
     CDS             complement(5172..5789)
                     /gene="tdk"
                     /locus_tag="OQQ76_001337"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HCS1967892.1"
                     /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF
                     GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE
                     VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA
                     GRPYNEGEQVVIGGNERYVSVCRKHYKEALQVGSLTAIQERHRHD"
     gene            6394..6807
                     /gene="hns"
                     /locus_tag="OQQ76_001338"
     CDS             6394..6807
                     /gene="hns"
                     /locus_tag="OQQ76_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator H-NS"
                     /protein_id="HCS1967893.1"
                     /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE
                     SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE
                     NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ"
     gene            complement(6951..7859)
                     /gene="galU"
                     /locus_tag="OQQ76_001339"
     CDS             complement(6951..7859)
                     /gene="galU"
                     /locus_tag="OQQ76_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HCS1967894.1"
                     /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY
                     VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV
                     TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD
                     ETGHSQIMVEQVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY
                     VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF
                     VEYGIRHNTLGTEFKAWLEEEMGIKK"
     gene            complement(8061..9074)
                     /gene="rssB"
                     /locus_tag="OQQ76_001340"
     CDS             complement(8061..9074)
                     /gene="rssB"
                     /locus_tag="OQQ76_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RssB"
                     /protein_id="HCS1967895.1"
                     /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL
                     ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV
                     EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDATVDNPAAAAKLLQEL
                     QPPVQQVISHCRVNYRQLVVADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL
                     LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI
                     LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML
                     SAE"
     gene            complement(9166..10071)
                     /gene="rssA"
                     /locus_tag="OQQ76_001341"
     CDS             complement(9166..10071)
                     /gene="rssA"
                     /locus_tag="OQQ76_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HCS1967896.1"
                     /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS
                     LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEI
                     ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN
                     PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGESLPWHARLKERLG
                     SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH
                     AAIAAGQLAVERKMDELLPLVRTNI"
     gene            10184..10642
                     /locus_tag="OQQ76_001342"
     CDS             10184..10642
                     /locus_tag="OQQ76_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HCS1967897.1"
                     /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ
                     DADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE
                     GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ"
     gene            10692..11534
                     /gene="purU"
                     /locus_tag="OQQ76_001343"
     CDS             10692..11534
                     /gene="purU"
                     /locus_tag="OQQ76_001343"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HCS1967898.1"
                     /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR
                     TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL
                     MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVNHEGLSRNEHDQKMADAIDAYK
                     PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH
                     YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR
                     TIIL"
     gene            11694..11778
                     /locus_tag="OQQ76_001344"
     tRNA            11694..11778
                     /locus_tag="OQQ76_001344"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11728..11730,aa:Tyr,seq:gta)
     gene            11826..11957
                     /locus_tag="OQQ76_001345"
     ncRNA           11826..11957
                     /ncRNA_class="other"
                     /locus_tag="OQQ76_001345"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(12141..12818)
                     /gene="narI"
                     /locus_tag="OQQ76_001346"
     CDS             complement(12141..12818)
                     /gene="narI"
                     /locus_tag="OQQ76_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HCS1967899.1"
                     /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD
                     RKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL
                     IGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV
                     GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY
                     QLVRARH"
     gene            complement(12818..13528)
                     /gene="narJ"
                     /locus_tag="OQQ76_001347"
     CDS             complement(12818..13528)
                     /gene="narJ"
                     /locus_tag="OQQ76_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HCS1967900.1"
                     /translation="MIELVIVSRLLEYPDAALWQHQQEMFEAIAASKNLSKEDAHALG
                     IFLRDLTAMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG
                     LQLNSRELPDHLPLYLEYLSQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVMFDL
                     LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR
                     FAGAVAPQYLNITTGGQH"
     gene            complement(13525..15063)
                     /gene="narH"
                     /locus_tag="OQQ76_001348"
     CDS             complement(13525..15063)
                     /gene="narH"
                     /locus_tag="OQQ76_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HCS1967901.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV
                     ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE
                     PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN
                     FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR
                     GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD
                     ADAIERAASTENEKDLYQRQLEVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA
                     MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAVDAGELGSNGILPDVESLRIPVQYLAN
                     LLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA
                     NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT
                     EPHP"
     gene            complement(15081..18803)
                     /locus_tag="OQQ76_001349"
     CDS             complement(15081..18803)
                     /locus_tag="OQQ76_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HCS1967902.1"
                     /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY
                     LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR
                     SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY
                     DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT
                     KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY
                     TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG
                     FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN
                     VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA
                     EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG
                     CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV
                     TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD
                     YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ
                     GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM
                     NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIARKFSEVCVGHLGKETDIVTLPIQHD
                     SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERAYPATYERFTSIGPLMEKIGNGG
                     KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPILNTAIDAAEMILTLAPETNGQVAVKAW
                     AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV
                     HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNPEKALN
                     FLTPHQKWGIHSTYSDNQLMLTLGRGGPVVWLSEADAKELGIADNDWIEVYNSNGALT
                     ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYAH
                     LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGND"
     gene            complement(19319..20710)
                     /gene="narK"
                     /locus_tag="OQQ76_001350"
     CDS             complement(19319..20710)
                     /gene="narK"
                     /locus_tag="OQQ76_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate transporter NarK"
                     /protein_id="HCS1967903.1"
                     /translation="MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC
                     LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR
                     RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK
                     QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI
                     WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG
                     FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL
                     LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD
                     ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV
                     VITWAVYGRHSKK"
     gene            21049..22845
                     /gene="narX"
                     /locus_tag="OQQ76_001351"
     CDS             21049..22845
                     /gene="narX"
                     /locus_tag="OQQ76_001351"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarX"
                     /protein_id="HCS1967904.1"
                     /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA
                     HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDEQLAQLQGL
                     QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA
                     VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN
                     MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ
                     NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL
                     ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA
                     TIARELHDSIAQSLSCMKMQVSCLQMQGDALPASSRELLSQIRNELNASWAQLRELLT
                     TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS
                     NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD
                     CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE"
     gene            22838..23488
                     /gene="narL"
                     /locus_tag="OQQ76_001352"
     CDS             22838..23488
                     /gene="narL"
                     /locus_tag="OQQ76_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator NarL"
                     /protein_id="HCS1967905.1"
                     /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG
                     IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG
                     ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRTTTERDVNQLTPRE
                     RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF"
     gene            complement(23489..24883)
                     /gene="ychO"
                     /locus_tag="OQQ76_001353"
     CDS             complement(23489..24883)
                     /gene="ychO"
                     /locus_tag="OQQ76_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415738.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter invasin YchO"
                     /protein_id="HCS1967906.1"
                     /translation="MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLP
                     DLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHV
                     ESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNV
                     GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQT
                     ATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGL
                     NYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRY
                     DNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQ
                     ILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVE
                     PFDALSNDELRWEP"
     gene            25067..25420
                     /gene="ychN"
                     /locus_tag="OQQ76_001354"
     CDS             25067..25420
                     /gene="ychN"
                     /locus_tag="OQQ76_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/F sulfur relay family protein YchN"
                     /protein_id="HCS1967907.1"
                     /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD
                     AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV
                     ELAQWTLSADKVLTF"
     gene            complement(25464..26159)
                     /gene="chaC"
                     /locus_tag="OQQ76_001355"
     CDS             complement(25464..26159)
                     /gene="chaC"
                     /locus_tag="OQQ76_001355"
                     /EC_number="4.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415736.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-specific
                     gamma-glutamylcyclotransferase"
                     /protein_id="HCS1967908.1"
                     /translation="MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDE
                     GPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGG
                     RTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGCTVNAIVFIMDPRHP
                     EYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLA
                     ENYLDGVLRPGFA"
     gene            complement(26317..26547)
                     /gene="chaB"
                     /locus_tag="OQQ76_001356"
     CDS             complement(26317..26547)
                     /gene="chaB"
                     /locus_tag="OQQ76_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation transport regulator ChaB"
                     /protein_id="HCS1967909.1"
                     /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKDDRRD
                     DASREETAHKVAWAAVKHEYAKGDDDKWHKKS"
     gene            26817..27917
                     /gene="chaA"
                     /locus_tag="OQQ76_001357"
     CDS             26817..27917
                     /gene="chaA"
                     /locus_tag="OQQ76_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-potassium/proton antiporter ChaA"
                     /protein_id="HCS1967910.1"
                     /translation="MSNAQEAVKTRHKETSLIFPVLALVVLFLWGSSQTLPVVIAINL
                     LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL
                     MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA
                     LPAANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAH
                     SSVWHAIWLIIHLIAVIAVTKMNASPLETLLDSMNAPVAFTGFLVALLILSPEGLGAL
                     KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV
                     LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA"
     gene            28322..28429
                     /locus_tag="OQQ76_001358"
     CDS             28322..28429
                     /locus_tag="OQQ76_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1967911.1"
                     /translation="MTLAQFAMTFWHDLAAPILAGIITAAIVSWWRNRK"
BASE COUNT         7218 a         7406 c         6848 g         6978 t
ORIGIN      
        1 gcgcgggaac aaagtaaaaa taatgacgaa gtaaacggag catggcagct ccgtttcatt
       61 tgaaaggaat taattaagca ggccggggaa aatcccctta ataccagtaa cgataaattc
      121 aatccccaat gccatcagca atagccccat aatacgcgta atcacgttga tgccggtctg
      181 gcgtaaaacc cgtaccagcc aaggtgccat gcggaacaat ccccagcaac ataaagcgaa
      241 caatgcaata gccacaaaga aaccaaacag atagctaatg ctgtgataac gcgtacccca
      301 gacgatggta gaactgatcg cccctggccc cgccatcaac ggcaacgcca atggcaccac
      361 accaatgctt tcacgtaccg cggtttctga tttttcttgc ttgttctgtt tatcctcgcc
      421 aagcttgccg ctgatcatcg acatcgctat cgtcaccacc aggatgcccc cggcgatacg
      481 gaacgaatca attgatatac caaaaagttg cagaatcgtg tcgccgagaa aaagcgagat
      541 ccacaagata atggccacag acaggttggc tgtaaggtta gttttgtttc gcgctgccgc
      601 tgtctgataa ctggtcatgc tgataaagac gggaataatc cctaccgggt tgaccagcgc
      661 aaataacccg atgaaaaatt tgaagtaaac gggaaaatca aaaaaggtct gaatcacggt
      721 tagctccgaa gcaaaagccg gataatgtta gccataaata aggttgaaaa gacgcgctga
      781 caatacgcct tttgacagca tttttcacct cctaactact taaaattgct atcattcgtt
      841 attgttatct agttgtgcaa aacatgctaa tgtagccacc aaatcatact acaatttatt
      901 aactgttagc tataatggcg aaaagcgatg ctgaaaggtg tcagctttgc aaaaaatttg
      961 atttggatca cgtaatcagt acccagaagt gagtaatctt gcttacgcca cctggaagtg
     1021 acgcattaga gataataact ctaatgttta aactctttta gtaaatcaca gtgagtgtga
     1081 gcgcgagtaa gcttttgatt ttcataggtt aagcaaatca tcaccgcact gactatactc
     1141 tcgtattcga gcagatgatt tactaaaaaa gtttaacatt atcaggagag cattatggct
     1201 gttactaatg tcgctgaact taacgcactc gtagagcgtg taaagaaagc ccagcgtgaa
     1261 tatgccagtt tcactcaaga gcaagtagac aaaatcttcc gcgccgccgc tctggctgct
     1321 gcagatgctc gaatcccact cgcgaaaatg gccgttgccg aatccggcat gggtatcgtc
     1381 gaagataaag tgatcaaaaa ccactttgct tctgaatata tctacaacgc ctataaagat
     1441 gaaaaaacct gtggtgttct gtctgaagac gacacttttg gtaccatcac tatcgctgaa
     1501 ccaatcggta ttatttgcgg tatcgttccg accactaacc cgacttcaac tgctatcttc
     1561 aaatcgctga tcagtctgaa gacccgtaac gccattatct tctccccgca cccgcgtgca
     1621 aaagatgcca ccaacaaagc ggctgatatc gttctgcagg ctgctatcgc tgccggtgct
     1681 ccgaaagatc tgatcggctg gatcgatcaa ccttctgttg aactgtctaa cgcactgatg
     1741 caccacccag acatcaacct gatcctcgcg actggtggtc cgggcatggt taaagccgca
     1801 tacagctccg gtaaaccagc tatcggtgta ggcgcgggca acactccagt tgttatcgat
     1861 gaaactgctg atatcaaacg tgcagttgca tctgtactga tgtccaaaac cttcgacaac
     1921 ggcgtaatct gtgcttctga acagtctgtt gttgttgttg actctgttta tgacgctgta
     1981 cgtgaacgtt ttgcaaccca cggcggctat ctgttgcagg gtaaagagct gaaagctgtt
     2041 caggatgtta tcctgaaaaa cggtgcgctg aacgcggcta tcgttggtca gccagcctat
     2101 aaaattgctg aactggcagg cttctctgta ccagaaaaca ccaagattct gatcggtgaa
     2161 gtgaccgttg ttgatgaaag cgaaccgttc gcacatgaaa aactgtcccc gactctggca
     2221 atgtaccgcg ctaaagattt cgaagacgcg gtagaaaaag cagagaaact ggttgctatg
     2281 ggcggtatcg gtcatacctc ttgcctgtac actgaccagg ataaccaacc ggctcgcgtt
     2341 tcttacttcg gtcagaaaat gaaaacggct cgtatcctga ttaacacccc agcgtctcag
     2401 ggtggtatcg gtgacctgta taacttcaaa ctcgcacctt ccctgactct gggttgtggt
     2461 tcttggggtg gtaactccat ctctgaaaac gttggtccga aacacctgat caacaagaaa
     2521 accgttgcta agcgagctga aaacatgttg tggcacaaac ttccgaaatc tatctacttc
     2581 cgccgtggct ccctgccaat cgcgctggat gaagtgatta ctgatggcca caaacgtgcg
     2641 ctcatcgtga ctgaccgctt cctgttcaac aatggttatg ctgatcagat cacttccgta
     2701 ctgaaagcag caggcgttga aactgaagtc ttcttcgaag tagaagcgga cccgaccctg
     2761 agcatcgttc gtaaaggtgc agaactggca aactccttca aaccagacgt gattatcgcg
     2821 ctgggtggtg gttccccgat ggacgccgcg aagatcatgt gggttatgta cgaacatccg
     2881 gaaactcact tcgaagagct ggcgctgcgc tttatggata tccgtaaacg tatctacaag
     2941 ttcccgaaaa tgggcgtgaa agcgaaaatg atcgctgtca ccaccacttc tggtacaggt
     3001 tctgaagtca ctccgtttgc ggttgtaact gacgacgcta ctggtcagaa atatccgctg
     3061 gcagactatg cgctgactcc ggatatggcg attgtcgacg ccaacctggt tatggacatg
     3121 ccgaagtccc tgtgtgcttt cggtggtctg gacgcagtaa ctcacgccat ggaagcttat
     3181 gtttctgtac tggcatctga gttctctgat ggtcaggctc tgcaggcact gaaactgctg
     3241 aaagaatatc tgccagcgtc ctaccacgaa gggtctaaaa atccggtagc gcgtgaacgt
     3301 gttcacagtg cagcgactat cgcgggtatc gcgtttgcga acgccttcct gggtgtatgt
     3361 cactcaatgg cgcacaaact gggttcccag ttccatattc cgcacggtct ggcaaacgcc
     3421 ctgctgattt gtaacgttat tcgctacaac gcgaacgaca acccgaccaa gcagactgca
     3481 ttcagccagt atgaccgtcc gcaggctcgc cgtcgttatg ctgaaattgc tgaccacctg
     3541 ggtctgagcg caccgggcga ccgtactgct gctaagatcg agaaactgct ggcatggctg
     3601 gaaacgctga aagctgaact gggtattccg aaatctatcc gtgaagctgg cgttcaggaa
     3661 gcagacttcc tggcgaacgt ggataaactg tctgaagatg cattcgatga ccagtgcacc
     3721 ggcgctaacc cgcgttaccc gctgatctcc gagctgaaac agattctgct ggatacctac
     3781 tacggtcgtg attatgtaga aggtgaaact gcagcgaaga aagaagctgc tccggctaaa
     3841 gctgagaaaa aagcgaaaaa atccgcttaa tcagtagcgc tgtctggcaa cataaacggc
     3901 cccttctggg caatgccgat cagttaagga ttagttgacc gatccttaaa ctgaggcact
     3961 ataacggctt ccacaacagg gagccgtttt cttatgccac ttctcaatga tctgctcgat
     4021 ttcagtgacc atccgcttat gcctccgccc tctgcacaac tatttgcaga acaccttccc
     4081 accgagtgga tacaacactg cctgacgctt tctgctcatg cgaccgttcg ccgccgtcgt
     4141 ttaccggggg acatggttat ctggatggtg gtgcaatgag ccaattaccg atgttgttcg
     4201 ccgtctgaac ctgagcgcgg atggcgaagc ggggatgaac ctgctggccc gcagcgctgt
     4261 cacccaagcg cgtcagcgcg tgggggccgc cccagtggaa tggctcttcc gccagaccgc
     4321 acagacaggg gcgcggaacg ttacctgaag gatgactggc acggcctgca actttttgcc
     4381 attgatggcg cacagttcag gacacctgat aaacccgagc tgcgtgaata ttatgggtct
     4441 gccaacacat ccactaagcg gcagaacgcc tacccggtta tgcgtctggt ggccttaatg
     4501 aacctgggaa gtcacattct gctgaatgcc gtgaccgcac cttaccggca gagcgaaact
     4561 gtgctggccc actccatgct cgccaccatc ccggataact ctattacgtt gtttgataag
     4621 cttttttaca gcgaagacct gctgctaacg ctgaaccaga agggttgtaa ccgccactgg
     4681 ctactgcctg cgtggaagaa tatcgcatca gaaatgatag agctgggaaa cacggcgtca
     4741 ccagggacca tcccgaaacg actggagcat cttcggggtg ctctggaagt ggtgttcata
     4801 acaaaacgcc cccgaccatc aaggccgagg tcggttaaga tatcaaaaac ccgttatcct
     4861 gtgaaacata gtgccgctcc tcttaagtga acggcattgc ccttctgggg ccgtattttt
     4921 tgtttaccca aagtaacttt tccataaacc gacagcatta gccttcatca tatttgcgac
     4981 gatgtataac gcctaaacac agggatattg tactttacag gtcacaagtc aacgtcggtg
     5041 cttaagagcc ctgtgaggcg tatagcggcg ttaaaaaact gccgagaagg gtatatagcc
     5101 cggaagaagt gcgtaaaacg aactgacagg ataaaagtgc cctgctcacc ctgtcagtaa
     5161 agaaattctt attaatcgtg gcgatgcctt tcctgaatag ccgttaatga gccgacttgt
     5221 aacgcctctt tatagtgttt acggcataca gaaacgtatc gttcattacc accaattacc
     5281 acctgctcac cttcgttata aggtctgcct gcttgatcaa gacgcagcac catgcttgct
     5341 ttacggccac aaaaacagat ggtttttaat tcaaccagtt tgtcggacca tgccagtaag
     5401 tattggctgc caataaataa ttcacctcga aaatcggtac gtaaaccata acaaagtacg
     5461 ggtatatcga gttgatcgac aacctccgat aattcatata cttgttgtct ggttaaaaac
     5521 tggcattcat caaccagtac gcaatgaatt gcctgctgtt catgttccgc acgaatctca
     5581 tcaaataatg atgaattttg gttaaataat tttgcaggcg atgacaaacc tatacgcgaa
     5641 ctgactttcc cggcaccaaa gcgatcatca atttctgccg tatatacgac agtgcgcatg
     5701 ccgcgttctt ggtaattata tgaagattgc aacaatgctg tagacttacc cgcattcatt
     5761 gcggaatagt agaaatatag ctgtgccatc agccacaggc cctcaatgat atgaaataaa
     5821 gttggctgga gtttatcata attcgtcagt ttttcagctc aacagtatgc acagaagtgg
     5881 gtatatgcgt tctcccttac gaagccttgc ataatccttc tgagctatca ttacaactgc
     5941 ctcgcttgtt ataagcgggt aaatgactgc tggtaactat tcacaatctt taacctgttg
     6001 cgcaagtaat agccctctgt tgacctccag gagatagtgc aatactaagt ccatgctctt
     6061 attgcgactg ttctactttt catcattcgc ttaataggga attctcgtaa acacaactaa
     6121 tacagaagac tgaaaggtcg tcagcctacg ataatctccc cataaaatgt gacatgaatc
     6181 aggaagtttt aacctcacgt gctgcgaaat catcggtgta aatagggcta tatgccgcgt
     6241 tttttctggc taattttatg aaaagatatt tattggcggc acaaaataaa gaacaatttt
     6301 gaattcctta cattcctggc tattgcacaa ctgaatttaa ggctctatta ttacctcaac
     6361 aaaccacccc aatataagtt tgagattact acaatgagcg aagcacttaa aattctgaac
     6421 aacatccgta ctcttcgtgc gcaggcaaga gaatgtacac ttgaaacgct ggaagaaatg
     6481 ctggaaaaat tagaagttgt tgttaacgaa cgtcgcgaag aagaaagcgc ggctgctgct
     6541 gaagttgaag agcgcactcg taaactgcag caatatcgcg aaatgctgat cgctgacggt
     6601 attgacccga acgaactgct gaatagcctt gctgccgtta aatccggcac caaagctaaa
     6661 cgtgctcagc gtccggcaaa atatagctat gttgacgaaa acggcgaaac taaaacctgg
     6721 actggccagg gccgtactcc agctgtaatc aaaaaagcaa tggatgagca aggtaaatcc
     6781 ctcgacgatt tcctgatcaa gcaataatct tttgtagatt gcaattgctt aaaatcccgc
     6841 catcggcggg attttttatt gtccggttta agacaattta ataagaataa gctataaaaa
     6901 aacggcgtcg attgttcaac gccgtttcgt ggataacacc gatatggatg ttacttctta
     6961 atgcccatct cttcttcaag ccaggcttta aattccgtgc caagggtgtt atgacgaata
     7021 ccgtattcaa cgaaggcctg catgtaacct aatttattac cgcagtcatg gctcttccct
     7081 ttcatatgat aggcttccac cgtttctttt tcgatcagca tatcaattgc gtcggtgagc
     7141 tgaatttcat caccagctcc cggaggggtt tttgccagca acggccaaat atccgcgcta
     7201 agtacgtaac gacccacaat agcgagatta gacggcgcaa catccgcttt cggtttttct
     7261 accacaccaa ccatcggtac actttcaccc ggcgctaatt caacgccttt gcaatccaca
     7321 acgccatatg cggtcacatc agcaacctgt tcaaccatga tctggctatg acccgtttca
     7381 tcaaagcggc ggatcatctc tgctaggtta tcctgtgaca aatcggattc atattcatcc
     7441 agaataacat caggcaaaat aacagctacc ggttcatcac ccactaccgg gtgagcacac
     7501 aataccgcgt gtcccaggcc tttcgccagc ccctgacgaa cttgcataat agtcacgtgc
     7561 ggcggacaaa tagactgcac ttcatcaagc agttgacgtt ttacacgttt ttccagcatt
     7621 gcttccagtt caaaactggt atcaaagtgg ttttcaatcg agtttttaga tgagtgcgta
     7681 accagcacaa tttcagtaat gccagccgca atacattcat tcacgacgta ttgaattaat
     7741 ggcttatcga caagtggcag catctctttc gggatggctt tcgtcgccgg caacatcctg
     7801 gttcctaatc ccgcaacggg gataacggct tttttgactt tcgtattaat ggcagccatt
     7861 taaattctcc tggactgttc gtgttttgaa cgtgttcata tttctgtatc gcatcccagt
     7921 atatcagcac cccgaagggg ctaagttctg aaaaggaggc gagttagcat aattaagaca
     7981 attacttata cgaatggcga cgatagtacc accagccgac attagcaggt aatgcaaatt
     8041 tagtccgcgt tatcgtttgc tcattctgca gacaacatca agcgcagtcg accaccagtt
     8101 ccccatattt ggcattgcca ggcatcgcat cgctggctca attgattcaa ataagcgtta
     8161 cctaaagtgc ctaacggaac accattactg atttgcacct ggtgttcgcc ggtatttaac
     8221 gtcgcattca gacccgcaga aaccagaatg agatttttca gttcgcgatg ataatagcca
     8281 actaatagcg gaaactgccc cggcagattg gcctgacgga gtaaatggtt tacctgcttc
     8341 aataacgcgc ccagctctgg caaccgttga ttttggtgtg caagctgttc ctgtaataat
     8401 ccgttaaaca atgcgcgtaa taacaaggca gcaagtacgc cattatgtcc agctcgggtg
     8461 acatcaaggc aataaaatgc cagatcgttt tccgaaagtg cggcaatatc aagcaccagg
     8521 ccgggtttgt ccgcgacaac caattgacga taattaaccc ggcaatggga aatcacctgc
     8581 tgaaccggcg gttgtagttc ctgtaataat ttcgccgctg cggcagggtt atcaaccgtt
     8641 gcatcccaat cgcgaaaaag cctttcctct tcctcaacgc gcgaattaaa catgctggga
     8701 tagagacagg caaaaaccat ctcgcgcaag cgattcagat ctttaactgg tttcagcaaa
     8761 acatcttcaa cgcccagacg taacgctttg gcaatatctg ccatattttc agtggcagat
     8821 atcaccagaa ctggggtctg gtcgcctctg ttacgtatat gctccagcag tttaagcccg
     8881 ttcattcgtg gcatcgcgat atcacatatc atcaggtctg gagtgaaacc tcccagcaac
     8941 tcaagggcat ccaccccatc agccgccagt accgttgtcg ctcccaatga ggaaaaccat
     9001 gaatccagaa gcgagcgaaa tacctgctca tcttcaacaa tgagaatctg ttttccgacc
     9061 aatggctgcg tcatgttctc tcccctgact ggctttactc aatagtggca tgctattgcc
     9121 acctgcgcct gtcagaatta acttaagtgt agataaaaat tctggtcaaa tgttggtgcg
     9181 taccaacggc aaaagttcgt ccattttcct ttccactgcc agctgtccgg ccgcaatggc
     9241 agcgtgcgcg cgatggaaat caagcgtaga tatttgcggg caaacaggtt gaatcagaat
     9301 atcgggcgga tcacctgcca tgcggttcct tttaaggcgg ttctccagca cctggataga
     9361 agtggtcata atctctgttg ccgttggcgc tgtcaccgcc cgacgtgttg ttatactgcc
     9421 taacctttct ttcagacgcg catgccacgg caaagattca ccattctcgc tattttcttc
     9481 actgacatta aaggagagca aatcttgttg catcaaatga gcatcgtgct gcaggtcgac
     9541 cgctatcaca atatcagccc ccaatgcacg cgtgagggaa ataggaattg ggttaactac
     9601 tgctccatca accagccagt agccgttatg tgcaacaggt gccatgagtc ctggaatact
     9661 gcatgatgcg cgaatagcaa gatggagatc gccttcagta aaccataatt cacgtcccgt
     9721 acttaaattg gtggcaacag ccgcaaagcg acgggaacaa ttttcgatct ctgtttccgg
     9781 cattatttcg cggtattgat tgaagacacg ctcgccgcgc agtaacccac cgcgctgcca
     9841 ggagagatcc atcaggcgta aaacatccca ataactgaaa gaggtcaccc aatcttccag
     9901 cgcagataat cgatcgcatg cataggcagc gcccaccagc gaaccaattg aacatcctgc
     9961 aacgatatca atttcaatac ccactttttt tagcgcatta ataacgccaa tatgcgacca
    10021 acctctcgcc gcgccagatc ccagcgccag ccctattttt atctttctca ttattcccgc
    10081 aagattcccc tggaatgcaa tcgtagccac atcgctactg ctcggttaac atagtgcaac
    10141 tcaggcggtt aatacgccgt tattgtttcc agggagatta tttgtgtctc agctttgtcc
    10201 ctgtggtagt gctgtcgagt atagcctatg ttgccaccct tatgtgtctg gtgaaaaggt
    10261 tgcacctgat ccagaacatc tcatgcgttc gcgttactgc gcttttgtga tgcaagacgc
    10321 agattattta ataaagacct ggcatccctc ttgtggagca gcggcgttac gtgccgaatt
    10381 gatggccgga tttgcgcata ctgaatggtt gggattgacc gtatttgaac attgttggca
    10441 ggacgccgac aatatcggat ttgtcagttt tgttgctcga tttaccgaag gtggcaaaac
    10501 aggtgcaata attgaacgtt cgcgattttt gaaagaaaac ggtcaatggt actatattga
    10561 cggtacacgt ccgcagtttg gtcgcaacga tccctgccct tgtggttcag gtaaaaaatt
    10621 taaaaagtgc tgcggccaat aatggttgac ggtacggttt agcaaacact ctcaacaagg
    10681 tttttccagc aatgcattca ctccaacgta aagttctgcg tactatttgt ccggaccaaa
    10741 aaggtctgat cgcacgtatt accaatattt gctacaagca cgagttaaat atcgtacaga
    10801 acaatgaatt tgttgatcac cgtaccgggc gcttttttat gcgcacggaa ctggaaggga
    10861 tttttaatga ttccaccctg ctggcggatc tcgatagcgc attgccagaa ggctccgtgc
    10921 gtgagctgaa tcctgccggt cgtcgccgga tagtgattct ggtcactaaa gaagcgcatt
    10981 gccttggcga tttgttgatg aaagccaatt acggcggcct ggatgtcgaa atcgcggcag
    11041 ttattggtaa ccacgatact ttacgttctc tggttgagcg ttttgatatt ccgtttgagc
    11101 tggtaaacca tgaagggtta agccgcaacg agcacgatca aaagatggca gacgccattg
    11161 atgcttataa acctgactat gtggtgctgg cgaagtatat gcgggtatta acgccggaat
    11221 ttgtggcacg cttcccgaat aaaatcatca atattcacca ttcattcctg cctgcgttta
    11281 tcggcgcacg tccttatcac caggcctatg aacgtggtgt gaagattatt ggcgcaaccg
    11341 ctcactatgt gaatgacaat ctggacgaag gcccaatcat catgcaggac gttattcatg
    11401 tcgatcatac ctacacagct gaagatatga tgcgcgcagg tcgtgacgtc gagaaaaacg
    11461 tcttaagtcg tgcgctatac aaagtactgg cacagcgcgt ctttgtttac ggtaatcgga
    11521 cgattattct ttaatcgcca gcaaaaataa ctggttacct ttaatccgtt acggatgaaa
    11581 attacgcaac cagttcattt ttctcaacgt aacactttac agcggcgcgt catttgatat
    11641 gatgcgcccc gcttcccgat aagggagcag gccagtaaaa agcattaccc cgtggtgggg
    11701 ttcccgagcg gccaaaggga gcagactgta aatctgccgt catcgacttc gaaggttcga
    11761 atccttcccc caccaccatc acttttcaaa agtccgtaaa ctctcaaacg aatccgcaat
    11821 taaatattct gcccaagcgg ggaaggatga gaagcttcga ccaaggttcg acttgagcgc
    11881 cagcgagaga gcgttgccgc aggcaacgac ccgaagggcg aagcgcgcag cgctgagtaa
    11941 tccttccccc accaccatcg cttccttgaa taatcaaaac ctgttactcc gagctaattt
    12001 tgcccgatgg caccacgttt accgggccta caatatcctc ccctgtaggt cggataagcg
    12061 aagcgcatcc gacaactcac cccgcaccgt gcccataaaa aaaccccgcc gaagcagggt
    12121 ctatgtgaac taaaattcgt ttagtgacga gcgcgcacca gctggtactt acgtgtcaga
    12181 tactccaccg gtacgctcca gatgtgtacc agacgcgaga acgggaacag caggaataac
    12241 gtcatcccca gcaccaggtg cagacggaag ataaacgcca caccatcgag gtgttgagaa
    12301 gcgccaccgt ggaaggtcac caccgactgc gcccagccaa ccagtttcat catctcgcta
    12361 ccgtccatat gctgagcgga gaacggaatg gtcaacaggc ccagcgcgca ctggataacg
    12421 agcagcgaca ggatcaggat atccgctccg gtagtggttg cacgcacgcg tgggctgaac
    12481 agacgacgct tcagcaacag cacgccgcca atcagacaca gcacgccgct ggcaccacca
    12541 gcaaacatcg ccattttctg tttcacttca atcggcagcc aggcttcata catccagtgc
    12601 ggcgtcagca taccgaagaa gtgaccaaca aaaatcccca gaataccgat atggaacagg
    12661 ttcgacgcca ggttcatccc tttgcgatcc agcatctggc tggacgccgc gcgccaggtg
    12721 tactgcccgt agtcataacg cagccagcta ccaatcagga agaccgcccc ggctatgtac
    12781 gggtagatat caaagaagaa catattcagg aattgcatta gtgctgtcct ccggtggtga
    12841 tattcagata ttgcggcgcg acggcaccgg caaagcgacg ctgatgagca gtgattgctg
    12901 aatcaccgca gcctttgtca gcaaagaatt taacctgctc ttcttcccag acagcatcca
    12961 gcgcctgcgg cgtatcatcg cgcgcttcgt cggcaatttt ttccgccact ttgtcgctgt
    13021 cgatagcggt attggccaat ttcagcagca gatcaaacat cacggcataa cggctttcac
    13081 gctgttgcag acgcgcgctc agcaatgcca gaatcggcgc gatatctttc aaaccttcca
    13141 cggcttcgct ttgcggcagc tgcgacaggt actccagata cagcggcaga tggtccggta
    13201 attcgcggct gtttaactgc aagccgtgct gctcgtactg cgccagcagg tccaccatcg
    13261 cctggccgcg gtcacgggat tcaccgtgaa catgttcaaa tagcaacagt gacgtggcgc
    13321 ggccacggtc gaacagttcg ctgtactggg cctgggcatc gagcggatcc atcgccgtta
    13381 aatcgcgcag gaaaatgccc agcgcatggg catcttcttt cgacagattt ttcgacgcag
    13441 caatcgcctc aaacatctct tgttgatgct gccataaggc agcatccgga tattcaagga
    13501 gacgcgatac aatcacgagt tcgatcatgg atgcggctcc gttttgctgg tcacatcgat
    13561 ggcatcgata cgacggctgt tgaacagatt gaatttggta tctgagccgt ggcagccatc
    13621 accaaaggta aagccgcagc catttttctc cgggaaggct tcccgtgcca gttcacgatg
    13681 actactcggc accacaaagc gatcttcgta gttagcaatc gccagataac ggtacatctc
    13741 ctgtgcctgg gcttcggtca gaccgacctc ttccagcgca cgggtatcaa ctttaccgtc
    13801 aacggtttca gcacgtttgt aatgacgcat cgccagcata cgtttcagtg cgcgcagtac
    13861 cggtttggta tcaccggcgg tcagcagatt cgccagatac tgtaccggaa tacgcaagct
    13921 ttcgacgtct ggcagaatgc cgttgctacc cagctcaccc gcgtctactg cagactgaat
    13981 cggagacaga ggcggcacgt accagaccat cggcagtgtg cgatattctg gatgcagcgg
    14041 cagcgccagt ttccattcca ttgccatttt ataaaccggc gactgctgtg cggcttcaat
    14101 aacgctcagc ggaataccgt ctttaatcgc ctgctcgatg actttcggat cgttcggatc
    14161 gaggaacacc tccagctgac gctggtaaag atctttctcg ttctcggtgc tggctgcacg
    14221 ttcaatcgcg tcggcatcgt acagcagcac gccaagataa cggatacgac cgacacaggt
    14281 ttctgagcac acggtcggct gacccgcttc aatacgcgga tagcagaaga tgcacttctc
    14341 agacttaccg ctcttccagt tgaagtagat ttttttgtac gggcatccgg tgatgcacat
    14401 acgccagcca cggcatttat cctggtcgat caggacgatg ccatcttctt cacgcttgta
    14461 aatcgcaccg ctcgggcagg tcgccacaca tgccgggttc agacagtgtt cgcacaggcg
    14521 cggcaaatac atcataaagg tgttttcgaa ctggctatac atcgccttct ggatgttgtc
    14581 gaagttcttg tctttcgcca gtttgtcaaa ctcaccaccc aggtcatctt cccagttcgg
    14641 ccctttttcg attttcgcca tccgttcccc ggtaatcagc gaacggggac gggcaatcgg
    14701 ctgcgatttg ctgccttccg gcgcggtatg caggttctga tagtcaaaat cgaacggctc
    14761 gtaataatcg tcgatccccg gcagatgcgg gttagcgaag attttaccca gcaacatggc
    14821 acggttaccc atgcgcggct gcagtttgcc gttgatttta cggatccagc cgcctttgta
    14881 tttttcctgg ttttcccagt cagtcgggaa gccctgaccc ggcttggttt ccacgttgtt
    14941 gaaccacgcg tactccacgc cttcacggct ggtccagacg tttttacagg taactgaaca
    15001 ggtgtggcag ccgatgcact tatcgagatt cagcaccatg ccgacttgtg aacgaatttt
    15061 cattttacgc tctcctgtac ctagtcattg ccttcgccat ctaaccagtc aatgttcttc
    15121 atcttacgca ctacaacaaa ctcatcgcgg ttagaaccta cggtgccgta gtagttaaag
    15181 ccgtatgcca gatgggcata gccaccaatc atatgcgtcg gtttcggcgt gatacgggtg
    15241 accgagttgt ggatcccccc acgctggcca gtaatttccg aacccggcag gttaacgata
    15301 cgttcctgcg cgtggtacat catggtcatc cctgccggaa cacgctggct gacaaccgca
    15361 cgggcagtca gcgcaccgtt gctgttgtaa acttcaatcc agtcgttatc ggcaatgccc
    15421 agctctttgg catcggcttc gctcagccag accaccgggc caccgcgacc taaggtcagc
    15481 atcaactggt tgtcgctgta ggtggagtgg atcccccact tctggtgcgg cgtcaggaag
    15541 ttgagcgctt tttccgggtt gccgttggat ttctggccta tcacttcttt caccgaacgg
    15601 gtgtcgatcg gcggacgata aaccagcagg ctttcaccga aatcacgcat ccactggtga
    15661 tcctgataca gttgctgacg accagagagc gtacgccatg ggatcagctc gtgaacgttg
    15721 gtgtaaccgg cgttgtaaga aacgtgttca tcttccagac cagaccaggt cgggctggag
    15781 ataattttgc gcggctgtgc ctgaatatcg cggaagcgga tcttctcgtc ttctttattc
    15841 agcgccagat gcgtatggtc acgaccggta aattcgctca gggcagccca ggctttcacg
    15901 gctacctgac cgttggtttc cggtgccagt gtcaggatca tctctgccgc atcaattgcg
    15961 gtgttcagta tcggctggcc tttcgccgga ccttccgctt tggtgtagtt gagcttacgc
    16021 agcagatcca tctcgctctg ggtgttccag gcaatccctt taccgccatt accgattttc
    16081 tccatcagcg ggccgataga ggtaaagcgt tcgtaagtcg ccggataagc gcgctctacg
    16141 accataatgt gtggcgcggt tttacctggg atcaggtcgc actcgccttt tttccagtct
    16201 ttcacatcca gcggctgcgc cagttcagcg gcagagtcat gctggatagg cagcgtgacg
    16261 atgtcggttt ctttacccag atggccgacg cacacttcgg agaatttcct cgcgatggct
    16321 ttgtagattt cccagtcgct tttcgcttcc caggccggat cgaccgccgc agacagcggg
    16381 tgaataaacg gatgcatatc cgaagtattc atgtcgtctt tttcgtacca ggtcgccgtc
    16441 ggcaaaatga tgtcggaata gagacaggtg ctcgacagac ggaagtccag cgtaaccacc
    16501 agatccagct tgccttccag accattgtcc tgccagtcca cttcttccgg cttcacgccg
    16561 ccctgttgcc ccagatcttt accctggata ccgtgctccg tccccagcag gtacttgagc
    16621 ataaactcat gacctttacc ggaagaaccg agcaggttag aacgccagat gaacaggttg
    16681 cgcgggtggt ttttaccgtt ttctggttgt tctgccgcaa aacggatgga accctctttc
    16741 agggatttca ccgtatagtc caccggattc atcccggctt tttccgcttc gccagcgata
    16801 gtcagcgggt tagtgcctaa ctgcggtgca gacggcagcc agcccatgcg ttccgcacgg
    16861 acgttaaagt cgatcaagtg tccggtatag cgggatttgt ccgccatcgg tgacagcaac
    16921 tcttccgccg tgacggtttc ataacgccac tggctggagt ggttatagaa ataagaagtg
    16981 ctgttcatgt gacgcgccgg acgctgccag tcaagggcaa acgccagcgg ctgccagccg
    17041 gtttgcggac gcagtttttc ctgacctaca tagtgcgccc agccgccccc gctctgaccg
    17101 acacagccgc agaaaatcag catgttgatc agaccacgat agttcatatc gaggtgatac
    17161 cagtggttca gccccgcacc aacgataatc atcgaacgac cgtgcgtttt atcagcgtta
    17221 tcggcaaatt cacgggcgat gcgaataatc tggctgcgag aaacgccggt aatctgctcg
    17281 gcccaggccg gggtataagc tttcacatcg tcatagctgg ttgcacagtt aacgtcgttc
    17341 aggccacgtt ccagaccgta gtttgccagc gtcagatcat aaacggtggt caccagggcg
    17401 gtgctgccat cagccagttg caggcgtttc accggcagtt tgtgcagcag cacgttttcc
    17461 agttccactt tgttgaagtg ttccgtgccg tcgccaccaa agtacgggaa gcctacctca
    17521 gcgatctcat cttggctacc cagcaggctc agttgcagct cggtttcttc gccagttttg
    17581 ccgtcgcgct gctcaagatt ccatttgccc ttctcgcccc agcggaagcc aatagaaccg
    17641 ttcggcgcaa ccatttcgcc attggtatta aaggcgacag ttttccattc cggattgttt
    17701 tcctggccca gcgcatcaac cagatcagca gcgcgcagca tacgacctgc agcgtagtaa
    17761 ccgtcgcgtt cttccagcat caccagcatc ggcatgtcgg tgtagcgacg cacatagtcg
    17821 gtgaaatact ggcttgggtt gtcgaggtgg aattcacgca gcattacgtg gcccatcgcc
    17881 agcgccattg ccgcatcggt gccctgtttc ggtgccagcc acagatcgca cagtttggcg
    17941 atttcagcgt agtctggtgt gacggcaaca gttttggtgc ctttgtaacg cacttcagta
    18001 aagaagtgag catccggggt acgcgtctgc ggcacgtttg aaccccaggc gatgatgtag
    18061 ctggagttat accagtcagc agattccggt acgtcagttt gctcgcccca ggtttgcgga
    18121 gacgcaggag gcaggtcgca gtaccagtcg tagaagctta agcaagtacc gccaatcagc
    18181 gagagatagc gtgcacccga tgcgtaagaa accatcgaca ttgccggaat tggcgagaaa
    18241 ccagcaacac ggtccgggcc gtagtttttg atggtgtaaa cgttagatgc ggcgatcagt
    18301 tcgttcacct cctgccagga agaacgaaca aatccaccgc gtccacgcgc ctgcttaaag
    18361 cttttcgctt tatcggcgtc ttcaatgata gaagcccatg cctcaaccgg atcgctatgc
    18421 agcgccttcg cttcacgcca cattttcatc aggcgtttgc gcatcatcgg gtatttcagg
    18481 cggttggcac tgtaaagata ccaggagtag ctggcaccgc gcgggcagcc gcgaggttca
    18541 tggtttggca gatccggacg ggtacgcgga tagtcagtct gctgggtttc ccaggtgacc
    18601 agaccgtttt tgacgtagat tttccagctg caggagccgg tgcagtttac cccgtgggta
    18661 gagcggacga ttttgtcatg ctgccaacgc tggcgatatc catcctccca gtcacggttg
    18721 gtattgagaa gctggccatg cccatcggca aaggtttcac ccttctgttt gaagtagcga
    18781 aaccggtcca ggaatttact catcggtttt ctcctgtggg agcctgtcgg ccctctgata
    18841 aatcgacatt gctaatgttt aagggcaagg taacgctctg aaacagcgtg ggaattgata
    18901 acgatcaaga gtgatgggga tgaaaaataa agtaaattcc taagataccc ctttaggata
    18961 attaacagcc accacataac agactgtaaa ttaagacgtt ttatacctgt agttatttaa
    19021 actattaaga tttttatgca gatgggtatt aaggagtatt ccccatgggt aacatattaa
    19081 tggctcttaa tgaaatccgg cgaaataaac catataacat tagtatgttg taactaaata
    19141 acgcttaaaa aaagcgcgac atcatgccgc gcaaaggata atcaaatatt ttactctata
    19201 taattcggtt tacaggaagg cggcaagtga atgaatccca ggagcttact aaagtaagtg
    19261 actggggtga atgaacgcag ccgcagcaca tgtaacccga agtatgacga gtaacggttt
    19321 attttttaga atgccgacca tataccgccc aggtaatcac tacgcaggcg atatagaaaa
    19381 tcaaaaatac cttcattgcg ccgactggcg aacccgttaa tgccagcgag ctaccaaacg
    19441 ctttcgggat aaagaagcca ccaatcgcgc caatcgcaga gatgaaaccc agcgccgccg
    19501 ccgtgtcggt tgccgcttca cgcatcgcac gttcgtcaga acccccttct gctttcacgc
    19561 gatccattgt cagtttacgg aagatcactg aaatcatctg gaaagtggaa ccactaccca
    19621 gcccagctgt caggaacagc gccaggaaga ccgcgaagaa cgccatgaag cttccgccct
    19681 gcccgtcagt cggtaaggtc aggaacagca ggccgctgaa aatcgccatc agaataaagt
    19741 tcaccagcgt gacacgagtt ccgcccagac ggtcagataa tgcaccacct gcagaacgcg
    19801 ccagcgcacc aataaacggc ccgaagaaag cgtattgcag aatctgaaca tccgggaact
    19861 gcgtttttga cagcattgca aagcccgcgg agaagccgat gaaggagccg aaggttgcca
    19921 gatacagcag gctcataatc cacagatgac cccgtttgag taccggcaac tgctccttga
    19981 tggaggcttt cgaggtagca agatcgttca tgccaaacca cgccgcaatg gtgaagatgg
    20041 caaggaacgg cacccatatc caggacgcat tcgccagata cagctcagtc ccatccggct
    20101 gtttgacgcc ctggctacca aatactgcga aaatcgacag tgataccacc agcggagcaa
    20161 ccaactgcat gacgctgacg cccatgtttc ccagaccacc attcagaccc agcgcgccac
    20221 cctgcttctg tttcggaaag aagaagctga tgtttgccat actggatgcg aagttcgcgc
    20281 cagcaaagcc gcatagcaga gagatgatga tgaagacgct ataaggcgtg gaggtatcct
    20341 gcacggcaaa acccagccag acgcaaggaa taatcagaat accggtgctg aacgccgtcc
    20401 agcgacgacc accgaagata ggaaccataa aggagtatgg aacacgtaat aacgcgccag
    20461 aaaccgaagg cagcgcagtc aacataaata gctgatcggt cgtaaaatta aaaccgactt
    20521 tcggtaagtt caccgcaaca gcgctgaaca acatccatac gcaaaacgcc agcagcagac
    20581 agggaacgga aatccacagg ttacggctgg caatacgttg accgcgttgt tgccagaacg
    20641 caggatcttc cggtcgccaa tctgtaatga cagctccagt agccctttcg ggggcggatg
    20701 agtgactcat agacacctct gatactcgtt tcgatgtctg ccaccttagt gtctgtagct
    20761 aaaggcaatt tgatgtaaat caaacgataa gataacttta tctatcattg atatttatca
    20821 ttacccatag tgagtacagt gatttcataa aaattatgag atttttcacg gtgctgtaaa
    20881 atccctaccc ttaccgatgt aaagcgacta accacacggc aaataaggag taactctttc
    20941 cgggtatggg tatacttcag ccaatagccg agaatactgc cattccagaa tgtatcatca
    21001 cattcattaa ggttattgct catttaaagc ctgaaggaag aggtttacat gcttaaacgt
    21061 tgtctctctc cgctcaccct ggttaatcag gttgcgctta ttgtgttgct ttctactgct
    21121 attggactgg cagggatggc ggtttctggc tggctggtgc aaggcgttca gggcagcgcc
    21181 catgcgatca acaaagcggg atcgctgcgc atgcaaagtt accgtctgtt ggcggcagtg
    21241 ccattaagtg agaaagacaa gcccttaatt aaagagatgg aacaaacggc atttagcgcc
    21301 gagttaactc gagcagcaga acgagacgaa caactggcgc aattacaggg tttacaagat
    21361 tactggcgta atgaactgat ccctgcactg atgcgtgcac aaaaccgcga aacggtgtca
    21421 gcggatgtca gccagtttgt tgccgggctt gatcagctgg tatctggttt tgaccgcacc
    21481 acggaaatgc gcattgagac agtggtactg gtccatcggg taatggcggt atttatggca
    21541 cttttactgg tgttcactat tatctggttg cgggcgcgac tgctacaacc gtggcggcaa
    21601 ctgctggcaa tggcgagtgc cgtcagtcat cgcgatttta cccaacgcgc gaacatcagc
    21661 gggcgcaacg aaatggcgat gcttggaact gcattgaaca atatgtctgc agaactggcc
    21721 gaaagttatg ccgtacttga gcagcgggtt caggagaaaa ccgccgggct ggagcataaa
    21781 aatcagatcc tctctttttt atggcaggct aaccgccgtt tgcattcccg cgccccgctg
    21841 tgtgaacgcc tgtcacctgt actcaacggc ttacagaatt taaccctgct acgtgatatc
    21901 gaactgcggg tgtatgacac tgatgatgaa gagaatcatc aggagtttac ctgccagcca
    21961 gatatgactt gtgatgataa aggctgccag ctctgcccgc gcggcgtatt acccgttggt
    22021 gatcgcggca caaccctgaa gtggcggctg gctgactctc atacgcagta cggtattttg
    22081 ctggcgaccc tgccgcaggg gcgtcatctt agccatgatc aacaacaact ggtggatacc
    22141 ctggttgaac aactcaccgc cacgctggcg ctggatcgcc atcaggaacg tcagcaacag
    22201 ttgatcgtga tggaagagcg tgccaccatt gcgcgcgaac tgcatgattc tattgcccaa
    22261 tctctctctt gcatgaagat gcaggtgagt tgtttacaga tgcagggcga tgcgctgcca
    22321 gcaagcagcc gcgaactgtt aagtcagatc cgtaacgaac tgaatgcatc ctgggcgcag
    22381 ttgcgtgaat tgctcaccac attccgcttg cagctcaccg agcctggatt acgtccggcg
    22441 ctggaggcga gttgcgaaga gtacagcgcc aaatttggct tcccggtgaa gctggattat
    22501 caattgccgc ctcgtctggt gccttcacat caggcaatcc acttgttgca aattgcccgt
    22561 gaggcattaa gtaacgccct caaacattcg caagcgagtg aggtcgtggt gacggtggcg
    22621 caaaacgata atcaggtcaa actgaccgtc caagataacg gctgcggcgt gcctgaaaat
    22681 gccatccgca gcaatcacta cggcatgata ataatgcgcg accgtgcgca aagtttacga
    22741 ggcgattgcc gcgtccgccg tcgtgaatca ggtggcaccg aagtggtggt cacctttatt
    22801 cccgaaaaaa ctttcacaga cgtccaagga gatacccatg agtaatcagg aaccggctac
    22861 tatcctgctg atcgacgatc acccgatgct gcgaactggc gtaaaacagc ttatcagtat
    22921 ggcaccagat atcaccgtgg ttggcgaagc gagtaatggc gaacagggta ttgaactggc
    22981 ggagtctctt gatcccgatc tgatcctgtt agatctcaat atgcccggca tgaacggtct
    23041 ggaaacgctg gataaactgc gcgaaaagtc cctctcaggg cgcattgtgg tattcagcgt
    23101 ctctaaccat gaagaagatg tggtcaccgc actgaaacgc ggcgcggatg gttatctgtt
    23161 aaaagatatg gaaccggaag atctgctgaa agcattgcat caggcagctg ctggcgaaat
    23221 ggtattaagc gaagcattaa cgcctgttct ggccgccagc ttgcgcgcta accgtaccac
    23281 tactgagcgc gatgttaacc agttaacccc acgcgagcgc gatattctca agctgattgc
    23341 ccagggtttg ccgaacaaga tgattgcccg ccgcctggat atcaccgaaa gcacagtaaa
    23401 agtgcacgtc aagcacatgc tgaagaaaat gaaactcaag tctcgcgtgg aagcagcggt
    23461 atgggtgcat caggagcgca ttttctgatt acggttccca gcgcagttcg tcgtttgaca
    23521 atgcatcgaa cggttcgaca agcgttagcg tgatctcatt ggaggagaca cgctgcccct
    23581 ggttatcttc caccaccacc gacaatcgcc agtgattgct tgccccttcc ccgttctgcc
    23641 agtcaggcat gatcagcgtc cagccctccg cgctgttggc ttgtgcgccc ggcgtcaaac
    23701 ttaatatctg cgtatcgccc tgccaaatca gttgccgaat accgtaacga ctgcggattt
    23761 gtaatttcag cggcactgtt tcgccaggtt ttagatccca cggcggtgtc gccagaaaca
    23821 ccgttaacgt ttttcgctgt cggtactcaa gagtcggtag attatttcgc tgcggattgt
    23881 catagcgact accacgtaac gactgacttt cggcaacctc gcccgcagaa agttgttttt
    23941 tgagcggtac accaaagcgg taattaagat tcagcccgag gttattttga ttctcgccac
    24001 tttcaccctg tttatgctgg gccgtcacag tgactaatgg cacaggggtg taatttaatc
    24061 ccagactcaa cgcgacggga ttgtgataac ccgtaccaga gttaaacaaa tcaacacgat
    24121 caccaaaata ctgttctagg ctgacactgg tattgaggtg ttgatagaac ggcatgcgca
    24181 tccgagctgt caggtcgtac ccgcgcgcca tccgttgttc ctgcgtggct gtctgttcat
    24241 gccatgcagc aaacggctga taaaagtttg ccaataatcg caaatattcg ccccacgctt
    24301 cggcaccaaa gcccgctcgc tgaagatttt cgtccagcaa gttgtcataa aaagtgttat
    24361 aacccaccag ccagttgccg cgcgcccagc gttgcccaac gcccacattg ctcaccaacc
    24421 cattatcctg ctgagtaaga ccaagctggc tccaggtgag ataacgatca ttatcttgta
    24481 acggcacaaa ccagcttcca cgactgccgg tgaaatgtcc ttcgttatcc actttgacgt
    24541 caacactggc atttccccac ggtgatagcc aggactctac gtgctgatta acctgttgac
    24601 taagcgcgtc gcggactttt cccaatgcga aagcttttgc ctgctcgcca gtatccagcc
    24661 cgttatcatt catactggtt tcgccgaaat ctttcacaat ttcagcaaag tgtttttccc
    24721 catcatgatt ttcgggagcc atgcctaaat ccggcagacc atcattgtta ttatcaaagg
    24781 gatttgccgc tttttgctcg aaggtagatt gtgcgttagc tgtaccgcct gctacaagca
    24841 agagtaaata aaacgggata atgcgaggaa cgaaacggct caaaacgtcg gtaacttccg
    24901 gtaataatga aaaccatagc cttaaagaat aacgattact ggcaactttt gtcgtatttt
    24961 ctcgcgcttt caggaaaatc cttaaaaatg tgaccgattg gtcagacgct gctgaagcag
    25021 taagatagaa gatgagtgtc taattccctg aatacaggag taaataatgc aaaaaatcgt
    25081 gatcgttgcc aatggcgcac cttacgggag cgaatccttg tttaacagct tgcggctggc
    25141 cattgcgtta cgagagcagg agagcaatct ggatctgcgt ctgttcctca tgtctgatgc
    25201 ggtcacagcc gggttgcgcg ggcaaaaacc aggggaaggc tacaacattc agcaaatgct
    25261 ggagatcctt accgctcaga atgtaccggt gaaattgtgc aaaacctgta ccgacgggcg
    25321 cgggattagt acacttcctc tgattgatgg ggtggaaatc ggtactcttg tggaactggc
    25381 gcaatggacg ctgtcagccg ataaagtgct cacattttaa tgtttgaggg ggcgtctgac
    25441 gccccactat gcgggaagtt tactcaggcg aatcccggcc gtaacacacc atccagataa
    25501 ttctccgcca gcagtttttt taccgatacc agcaaatcat tcagcccatc gtcctgcatt
    25561 cccagtttga taagctcctg ttccagtgaa aacaggtatt gtgcgttggt tcccagcgga
    25621 ccgctcgccg ccgcaatcaa cggcgcgatg acctgagcgc gagtgtcaga ttcatattct
    25681 ggatgtcgcg ggtccataat aaacacaatg gcgtttactg tgcatccatc atcaagatca
    25741 agctgacacc aggttggcag ataacagccg gtaatcatct cgcgcttcca caacagggtt
    25801 agttcctgct ccagcgtctc ttctggcagt cgataggcga cgcctgtagt gcgtccgccc
    25861 tctttcagtg caagcatccg tcccggctgg tgcgcagtcc cgcgcccggc ggtcaggcgc
    25921 aggcaaaacg cgcgatgcca tccaaccagt gtaccggtgc acgactcggt aaactccagt
    25981 gccggattcc acatcaacga tccataaccg aagatccaca ccggtccctc atcaggtcga
    26041 caagccagcg tcgccgccag cgaagccgct cgttgctctg ctgaccataa gagtgattct
    26101 tcaatggcac caaatgccgt tttacaatcg gcattcatca agaaatcacg cgttatcacc
    26161 ttacacctcc gccactgcat acttccctgc gacaactttt tggtgtcttc cggacatttt
    26221 tactgctcat tttgaaacca cttacgggac aatatgcaat ccacggacca cttgcaaggc
    26281 aacaccgcac gaatagcttt aactaagcta ccggttttac gattttttat gccatttatc
    26341 atcatcccct ttggcatatt catgcttcac agcagcccag gccactttat gcgcggtttc
    26401 ttcgcggctg gcgtcatcac gccgatcgtc tttatcttta tattgatccc atgcgctgtt
    26461 gaacgcttct ttatagatat cctgggcatg agacggtaga acgtgcttta cgctttccgg
    26521 cagatcgctt ttcgttttat acggcatcgt tgactccttt tacaaagttg aacattaagt
    26581 gtggtcaaca atatctactc ttgccaaaac ataagaattt tcatgtcaga ctgttcttaa
    26641 gaaacgctaa aacaaacatt gtctaaacgt aatacttatt tttatgtccc aatgagtaaa
    26701 aaatcgacag cggggtaaaa attcgtaaaa tgttaccgat atccagacac tttctgttat
    26761 ttttcctacc tattttttac attttcgata aattcatctg caaagggata accataatgt
    26821 caaatgctca agaggcggta aaaacccgcc acaaggagac ttcgcttatt ttcccggttc
    26881 tggcgctggt agtgctgttc ctgtggggaa gcagccagac actaccagtg gtcattgcca
    26941 tcaatcttct tgcgcttatt ggtattttaa gtagcgcctt tagtgttgtc cgtcatgcgg
    27001 acgtattagc ccatcgcctg ggagaacctt acggttcgct tattcttagc ctttcagtgg
    27061 ttattcttga agtcagtttg atttcagctt taatggcaac cggcgacgcc gcgccaacgc
    27121 taatgcgtga tacgctctat tcaatcatta tgattgttac cggtgggctg gttggctttt
    27181 cattattgtt gggcggtcgt aagtttgcca cccaatatat gaatctgttt ggtatcaagc
    27241 agtatttaat tgcgctgttc cccctggcga taatcgtact ggtatttcca atggctctgc
    27301 ctgcggcgaa tttttcaacc ggtcaggcgt tactggtagc attaatttct gcggcaatgt
    27361 atggcgtatt tttactgatc cagaccaaaa cgcatcaaag tttgtttgtc tacgagcacg
    27421 aagatgacag tgatgacgac gacccgcatc acggtaaacc gtctgcccat agcagcgtgt
    27481 ggcatgctat ctggttgatt atccatctga ttgccgttat tgcagtcacc aaaatgaatg
    27541 ccagcccgct ggagacattg ctcgacagca tgaatgcccc tgtcgccttt actggcttcc
    27601 tggtggctct gttgattctg tcgccggaag gtttaggtgc gttaaaagca gtgttgaaca
    27661 accaggtcca gcgcgcgatg aatctgttct ttggttcagt gttagcaacc atttcgctta
    27721 ccgtacctgt cgtcacgcta attgccttta tgacgggtaa cgaattacag tttgcacttg
    27781 gtgcgccaga aatggtggtg atggtggcct ctttagtgct gtgccatatc tccttctcca
    27841 ccggacgtac taacgtgctc aatggcgcag cgcatctggc actgtttgcc gcctatttga
    27901 tgacgatatt tgcctgacag ttatatctcc tccgatgacg gaaatcgggg gagataagat
    27961 aaattcctgc ttattgtatt tcttcatact acctagacag ctcgttaatc agaattgcga
    28021 gcctgtacca caacctgcac gaaaccactg caacagctgt tgaaaagccg gaatgtactc
    28081 tttattgcaa acatttcagg gatgaagtga agatgaattg agacgtagta tccacaccaa
    28141 gccggaatta tccggtgagg cgcaatgttg cgggggcttt atccctggtg gcattggttg
    28201 ctggaaagag aaaacccccg cacgttgaga ggtaaaacct gacaacaaaa cgggggctaa
    28261 tcttgaaacc agacacttca agaatagccg caaaatgttg tcattacaac aaggcggcta
    28321 tatgacgctc gcgcagtttg ccatgacttt ctggcacgac ctggcagcac cgatcctggc
    28381 ggggattatt accgcagcga ttgtcagctg gtggcgtaac cggaagtaag gtgaaaacgg
    28441 gcgtcaggct
//
LOCUS       DAJVUN010000039        28426 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.039, whole genome shotgun sequence.
ACCESSION   DAJVUN010000039 DAJVUN010000000
VERSION     DAJVUN010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28426
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.039"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..740
                     /locus_tag="OQQ76_001359"
                     /pseudo
     CDS             1..740
                     /locus_tag="OQQ76_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708946.2"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial protein"
     gene            complement(783..1643)
                     /gene="rsmI"
                     /locus_tag="OQQ76_001360"
     CDS             complement(783..1643)
                     /gene="rsmI"
                     /locus_tag="OQQ76_001360"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HCS1967912.1"
                     /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAE
                     DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG
                     YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE
                     AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK
                     EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALVAEIHGVKKNA
                     LYKYALEQQG"
     gene            1707..3743
                     /gene="lpoA"
                     /locus_tag="OQQ76_001361"
     CDS             1707..3743
                     /gene="lpoA"
                     /locus_tag="OQQ76_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoA"
                     /protein_id="HCS1967913.1"
                     /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQ
                     ADSAFYPQQMQQSSDDTRINWQLLAIRALVKEGKTRQAVELFNQLPQELNDSQRREKT
                     LLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
                     QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP
                     DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI
                     QQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTADGVASPAQASVSDLTGDQPAAQ
                     PVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNV
                     EELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIP
                     RSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGTPITPRATT
                     DSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGAML
                     YASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAIG
                     VDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS"
     gene            3701..4096
                     /locus_tag="OQQ76_001362"
     CDS             3701..4096
                     /locus_tag="OQQ76_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HCS1967914.1"
                     /translation="MATVPTRSGSPRQLTTKQTGDAWEVQARRWLEGKGLRFVAANVN
                     ERGGEIDLIMREGWTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS
                     FDTVDCRFDVVAFTGNEVEWIKDAFNDHS"
     gene            4116..4706
                     /gene="diaA"
                     /locus_tag="OQQ76_001363"
     CDS             4116..4706
                     /gene="diaA"
                     /locus_tag="OQQ76_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA initiator-associating protein DiaA"
                     /protein_id="HCS1967915.1"
                     /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI
                     LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ
                     VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
                     IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD"
     gene            4716..5291
                     /gene="yraP"
                     /locus_tag="OQQ76_001364"
     CDS             4716..5291
                     /gene="yraP"
                     /locus_tag="OQQ76_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HCS1967916.1"
                     /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ
                     VDDGTLEVRVNSALSKDEQIKKENRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD
                     GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
                     LVTEREAKAAADIASRVSGVKRVTTAFTFIK"
     gene            complement(5405..6445)
                     /locus_tag="OQQ76_001365"
     CDS             complement(5405..6445)
                     /locus_tag="OQQ76_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1967917.1"
                     /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQHYYGKAFTA
                     AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR
                     SLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT
                     LVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQSGFFS
                     RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI
                     PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV
                     SGVIVGGLALLF"
     gene            complement(6518..7153)
                     /locus_tag="OQQ76_001366"
     CDS             complement(6518..7153)
                     /locus_tag="OQQ76_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HCS1967918.1"
                     /translation="MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGV
                     FNPHDPQLSDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLG
                     AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
                     TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE"
     gene            7281..7799
                     /gene="yhbO"
                     /locus_tag="OQQ76_001367"
     CDS             7281..7799
                     /gene="yhbO"
                     /locus_tag="OQQ76_001367"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417622.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein/nucleic acid deglycase"
                     /protein_id="HCS1967919.1"
                     /translation="MSKKIAVLISDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVK
                     GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFA
                     ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP
                     AFNREALRLLGA"
     gene            complement(7779..8222)
                     /locus_tag="OQQ76_001368"
     CDS             complement(7779..8222)
                     /locus_tag="OQQ76_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbP family protein"
                     /protein_id="HCS1967920.1"
                     /translation="METLITISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY
                     ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN
                     RRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA"
     gene            8273..8575
                     /gene="yhbQ"
                     /locus_tag="OQQ76_001369"
     CDS             8273..8575
                     /gene="yhbQ"
                     /locus_tag="OQQ76_001369"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708956.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage response exodeoxyribonuclease YhbQ"
                     /protein_id="HCS1967921.1"
                     /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG
                     ELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD"
     gene            complement(8562..9065)
                     /locus_tag="OQQ76_001370"
     CDS             complement(8562..9065)
                     /locus_tag="OQQ76_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1967922.1"
                     /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL
                     VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARKLVYEGLDSLNE
                     FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEY
                     HEHFNRF"
     gene            complement(9059..9583)
                     /locus_tag="OQQ76_001371"
     CDS             complement(9059..9583)
                     /locus_tag="OQQ76_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HCS1967923.1"
                     /translation="MLNKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA
                     LDDGELEFLEGRRLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAA
                     RKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK
                     TAPETKQTSVGEPC"
     gene            9792..10772
                     /locus_tag="OQQ76_001372"
     CDS             9792..10772
                     /locus_tag="OQQ76_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017457364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1967924.1"
                     /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE
                     KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY
                     AAERYPNIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL
                     EVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLID
                     RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR
                     SPAYVSQVAKVWRQAIDRCKADPQSAWMETLGSMSEGTQTTLGAYHRKWQ"
     gene            10781..11659
                     /locus_tag="OQQ76_001373"
     CDS             10781..11659
                     /locus_tag="OQQ76_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312067.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HCS1967925.1"
                     /translation="MKYSLGPVLWYWPKETLEDFYQQAATSSADVIYLGEAVCSKRRA
                     TKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM
                     CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN
                     QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN
                     GIQTMSGYVYNLGNELTSMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLLLTANS
                     DCNGYWRRLAGLELQA"
     gene            11865..12872
                     /locus_tag="OQQ76_001374"
     CDS             11865..12872
                     /locus_tag="OQQ76_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HCS1967926.1"
                     /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY
                     WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY
                     PGRIDLGLGRASGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG
                     YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP
                     YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYVV
                     QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL
                     G"
     gene            complement(12990..14234)
                     /gene="mtr"
                     /locus_tag="OQQ76_001375"
     CDS             complement(12990..14234)
                     /gene="mtr"
                     /locus_tag="OQQ76_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HCS1967927.1"
                     /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS
                     MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL
                     TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK
                     VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY
                     GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV
                     LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRLKTALLTFAPPV
                     VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMITLIL
                     VFGVGNALVHILSSFNLLPVYQ"
     gene            complement(14388..16277)
                     /gene="deaD"
                     /locus_tag="OQQ76_001376"
     CDS             complement(14388..16277)
                     /gene="deaD"
                     /locus_tag="OQQ76_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DeaD"
                     /protein_id="HCS1967928.1"
                     /translation="MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR
                     DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR
                     GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE
                     MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
                     DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN
                     GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG
                     RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ
                     QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKR
                     EFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI
                     ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH
                     TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR
                     FGGDA"
     gene            complement(16270..16350)
                     /gene="yrbN"
                     /locus_tag="OQQ76_001377"
     CDS             complement(16270..16350)
                     /gene="yrbN"
                     /locus_tag="OQQ76_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YrbN"
                     /protein_id="HCS1967929.1"
                     /translation="MKIADQFHDELCRLAAINFEAHVLHG"
     gene            complement(16457..17341)
                     /gene="nlpI"
                     /locus_tag="OQQ76_001378"
     CDS             complement(16457..17341)
                     /gene="nlpI"
                     /locus_tag="OQQ76_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020802045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HCS1967930.1"
                     /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL
                     ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL
                     GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD
                     PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER
                     LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVVNNVHNFVEHRYALL
                     ELSLLGQDQDDLAESDQQ"
     gene            complement(17450..19585)
                     /gene="pnp"
                     /locus_tag="OQQ76_001379"
     CDS             complement(17450..19585)
                     /gene="pnp"
                     /locus_tag="OQQ76_001379"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312072.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HCS1967931.1"
                     /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV
                     VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL
                     FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
                     YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQN
                     INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSE
                     TIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL
                     PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM
                     VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL
                     MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREGISALQMD
                     IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK
                     DVIGKGGSVIRALTDETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV
                     YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ
                     GRIRLSIKEATEQSQPAAAPEAPAAEQGE"
     gene            complement(19832..20101)
                     /gene="rpsO"
                     /locus_tag="OQQ76_001380"
     CDS             complement(19832..20101)
                     /gene="rpsO"
                     /locus_tag="OQQ76_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HCS1967932.1"
                     /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA
                     EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR"
     gene            complement(20250..21194)
                     /gene="truB"
                     /locus_tag="OQQ76_001381"
     CDS             complement(20250..21194)
                     /gene="truB"
                     /locus_tag="OQQ76_001381"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HCS1967933.1"
                     /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT
                     GALDPLATGMLPICFGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT
                     FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF
                     IRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH
                     LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP
                     LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA"
     gene            complement(21194..21595)
                     /gene="rbfA"
                     /locus_tag="OQQ76_001382"
     CDS             complement(21194..21595)
                     /gene="rbfA"
                     /locus_tag="OQQ76_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001712908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HCS1967934.1"
                     /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS
                     RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS
                     LVEGMRMSNLVTSVVKHDEERRVNPDDSKED"
     gene            complement(21759..24431)
                     /gene="infB"
                     /locus_tag="OQQ76_001383"
     CDS             complement(21759..24431)
                     /gene="infB"
                     /locus_tag="OQQ76_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HCS1967935.1"
                     /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAKEKQT
                     LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL
                     AAEEQAQREAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSN
                     QQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDN
                     AEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKSNKHAESKADRE
                     EARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIK
                     AMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAP
                     VVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAA
                     FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD
                     RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMAS
                     GAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSI
                     PVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMT
                     EGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASN
                     AILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLA
                     EVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVR
                     NGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA"
     gene            complement(24456..25943)
                     /gene="nusA"
                     /locus_tag="OQQ76_001384"
     CDS             complement(24456..25943)
                     /gene="nusA"
                     /locus_tag="OQQ76_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HCS1967936.1"
                     /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID
                     VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF
                     DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEA
                     VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE
                     EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW
                     DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW
                     ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL
                     LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAA
                     RGVCTLEDLAEQGIDDLADIEGVTDEKAGALIMAARNICWFGDEA"
     gene            complement(25971..26423)
                     /gene="rimP"
                     /locus_tag="OQQ76_001385"
     CDS             complement(25971..26423)
                     /gene="rimP"
                     /locus_tag="OQQ76_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HCS1967937.1"
                     /translation="MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED
                     GINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV
                     LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANQVPHF"
     gene            complement(26630..26706)
                     /locus_tag="OQQ76_001386"
     tRNA            complement(26630..26706)
                     /locus_tag="OQQ76_001386"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26670..26672),aa:Met,seq:cat)
     gene            27054..28397
                     /gene="argG"
                     /locus_tag="OQQ76_001387"
     CDS             27054..28397
                     /gene="argG"
                     /locus_tag="OQQ76_001387"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HCS1967938.1"
                     /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN
                     LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT
                     TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT
                     DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN
                     PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSNDVEMMLEANRIGGRHGLGMS
                     DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG
                     RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG
                     DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSATSGVPQVENMENKGQ"
BASE COUNT         6765 a         7828 c         7159 g         6674 t
ORIGIN      
        1 tcacaaccga ccaggttgtc tctgttaaca cccgattcac acagataaaa agcagcaccg
       61 tatattctgc tgcaacccaa acgggtgttt gccagggtga cacgtctcgt tatggacccg
      121 ttaatattgg tgcaaatacc acctttaccc tgtatgtcac caagccattt ctcggctcga
      181 tgaccattcc gaaaacggat attgccgtca ttaaaggcgc gtgggtcgat ggaatgggaa
      241 gcccgtctac aggtgacttc catgatttag tcaagttatc gattcaggga aatctcaccg
      301 ccccacagtc atgcaaaatt aatcagggcg atgttattaa ggttaatttt ggattcatca
      361 atggtcagaa gtttaccacc cgcaatgcca tgccagacgg ttttactcca gtagactttg
      421 atatcactta tgactgtggt gatacttcaa agattaaaaa ctcgttgcaa atgcgcatcg
      481 acggtacaac tggggtagta gaccagtaca acttggtcgc caggcgaaga agttcagaca
      541 atgtgcccga tgtcggtatt cgtattgaaa atctcggcgg cggagttgca aatattcctt
      601 ttcagaacgg tatccttccc gttgatcctt ccgggcatgg caccgtcaat atgcgcgcct
      661 agccagttaa tctggtcggt ggtgagctgg aaacaggaaa atttcagggc acagccacca
      721 ttaccgtcat ggtgcggtaa aagaagacgt tgcgttttga ttaacgcaac gcttcggcac
      781 tgttacccct gctgctccag cgcatactta tacagcgcat ttttcttcac gccatgaatt
      841 tctgcgacca gcgccgccgc ttttttcagc ggcagttctg cctgtagcag cgccagcgtg
      901 cgcagggcat cggcgggtaa gtcttcttcc tgtgctttat gaccttcgac aatcagcacc
      961 atttcgcctt tgcgacggtt ttcatcttcc tttacccacg ccagcagttc gccaacgggc
     1021 gcgccgtgaa tggtttccca ggttttggtc agctcacgcg ccagaaccac gtagcgggat
     1081 tcgcctaata ccgcaacgat atcttccagg ctatctaaca gacggtgggt ggattcataa
     1141 aaaatcagcg tgcgcggctc cgcttcaatg gcttttagcg catcacggcg gccttttgat
     1201 ttggcaggta aaaagccttc gtaacagaaa cggtcagagg gtaaacccgc ggcgcttaac
     1261 gcagtgatag cagcacacgg cccgggtagc ggcaccacgc gaatccccgc ttcacggcag
     1321 gtacgcacca gatggtagcc aggatcgtta attagcggcg ttccggcatc ggaaaccagc
     1381 gcaatgtttt gcccctcttg cagcttcgcc agcagcgttt cggctttttg ttgttcgtta
     1441 tggtcgtgca gcgcaaacaa ccgggcatta atcccaaaat gttgcagcaa taaaccggtg
     1501 tgacgagtat cctcggcggc aatcagatca acggcctgta atacctctaa cgcacgctgg
     1561 gtgatatccg ccagattgcc gattggcgtc ggtacaatgt aaagctggcc ctgagaatta
     1621 tccgccgatt ggtgttgttt cattgtgtcg tccgtattgc cgatttaata ttgagcattg
     1681 cgtaaaaaaa tatcactgga tacattatgg taccctcaac attttctcgt ttgaaagccg
     1741 cgcgttgtct gcctgttgtt ctggcagccc tgattttcgc cggttgtggc acccatactc
     1801 ccgatcagtc cactgcttat atgcagggca cggcgcaggc tgattctgcc ttttatcctc
     1861 agcagatgca gcaaagctct gatgatacca ggatcaactg gcaattactc gccattcgtg
     1921 cactggtgaa agaaggtaaa accaggcagg cggttgagtt gtttaaccaa ctaccgcaag
     1981 aactgaacga ttctcagcgt cgcgagaaaa cactgctggc ggtagagatt aaactggcgc
     2041 agaaagattt tgctggcgcg caaaacttgc tggcgaaaat cacacctgcc gatttagaac
     2101 aaaaccagca agcgcgttac tggcaggcaa aaatcgatgc cagccagggg cgtccttcca
     2161 ttgatttact gcgcgcgtta attgctcagg aaccgctgct cggcgcgaaa gaaaaaaagc
     2221 agaatattga tgccacctgg caggcgctct cctccatgac tcaggaacag gcgaatacgc
     2281 tggtgatcaa cgccgacgaa aatattctgc aaggctggct ggatctgcag cgcgtctggt
     2341 ttgataaccg taacgatccc gatatgatga aagccgggat cgccgactgg cagaaacgtt
     2401 atccgaacaa tccgggcgcg aaaatgctgc caacgcagtt ggttaacgta aaagcgttta
     2461 aaccagcctc gaccaacaaa atcgccctgc tgttgccgct gaatggccag gcagcggtat
     2521 ttggtcgcac tattcagcaa ggctttgaag cggcgaaaaa tatcggcact cagccagtgg
     2581 cggctcaggt agctgccgca cctgccgcag acgtagcaga acaacctcag ccgcaaactg
     2641 cggatggcgt tgccagcccg gcacaagcct cggttagcga tctgaccggt gatcagcctg
     2701 cggcccagcc ggtgcctgta agcgccccgg cgacaagcac cgcagcggta agcgcacccg
     2761 caaatccatc cgcagagctg aaaatctacg atacctcatc acaaccactt agccagatct
     2821 taagccaggt tcagcaggat ggcgcgagta ttgtggttgg tccgttgctg aaaaataacg
     2881 ttgaagagtt gcttaagagc aacaccccgc tgaacgtgct ggcactgaac cagccggaga
     2941 atatcgaaaa ccgcgtcaat atttgttact tcgcgctttc accggaagac gaagcgcgcg
     3001 atgcagcgcg tcatattcgt gaccagggta aacaagcgcc gctggtgctg atcccacgca
     3061 gttcattggg cgatcgcgta gccaatgcgt ttgcgcagga gtggcagaaa ctgggcggcg
     3121 gcaccgttct gcaacaaaaa tttggttcca ccagcgaatt acgcgcgggt gttaacggcg
     3181 gttctggtat cgctttaacg ggtaccccga ttactcccag agcgacaacc gactccggca
     3241 tgacgaccaa caatccaacg ctgcaaacca cgccaaccga tgaccagttc accaataatg
     3301 gcggtcgtgt cgatgcggtg tacattgtgg caacgccggg tgaaatcgct tttatcaaac
     3361 cgatgatcgc catgcgtaac ggtagccaga gcggtgcaat gctgtacgcc agctcccgca
     3421 gcgcacaagg caccgcaggc ccggatttcc gtctggagat ggaaggtttg cagtacagcg
     3481 aaatcccgat gctggcgggc ggtaatctgc cgttaatgca gcaggcactc agcgcggtga
     3541 ataacgatta ttcactggct cgcatgtatg cgataggcgt cgatgcctgg tcgctggcaa
     3601 atcatttctc acaaatgcgc caggttcagg gttttgaaat caacggtaat accggaagcc
     3661 tgacggcaaa cccggattgc gtgattaaca ggaagttatc atggctacag taccaacaag
     3721 gtcaggtagt ccccgccagt taaccaccaa acagaccggc gatgcgtggg aagtacaagc
     3781 gcgtcgctgg ctggaaggca aaggactgcg atttgtcgcc gctaacgtga acgagcgtgg
     3841 cggtgagatc gatctgataa tgcgtgaagg ctggaccacc gtttttgtcg aggtgcgtta
     3901 ccgccgctct gcgctttatg gcggcgcggc agccagtgtg acccgcagca aacaacacaa
     3961 attattacag actgcccgct tgtggctcgc gcgtcataat gggagttttg atactgtgga
     4021 ttgccggttc gatgtggtag ccttcaccgg gaatgaggtt gagtggatta aggatgcctt
     4081 taatgaccac tcataattaa ggtttaagga ttagcgtgca agaaagaatt aaagcttgct
     4141 tcactgaaag cattcaaact caaattgcgg cggcagaggc gcttccggat gccatctccc
     4201 gtgcagccat gacgctggtt cagtctctgc tcaatggcaa caaaatcctc tgttgtggta
     4261 atggaacttc cgctgccaat gcacagcatt ttgctgccag catgatcaac cgtttcgaaa
     4321 cggagcggcc cagcttacct gccattgcac taaatactga taatgttgtc ttaacggcga
     4381 ttgccaacga tcgcttacat gatgaagtgt atgcaaaaca ggtgcgggcg ctgggtcatg
     4441 cgggagatgt attgttagcc atttccaccc gtggcaacag ccgcgatatt gttaaagcag
     4501 ttgaagccgc cgttacgcgt gatatgacca ttgtggcatt gaccggctat gacggcggcg
     4561 aacttgcagg tttgttaggg ccacaggatg tggagatccg cattccttcg catcgtagtg
     4621 ctcgcattca ggaaatgcat atgctgacgg taaattgcct gtgcgatctg atcgataaca
     4681 cgcttttccc tcaccaggat gattaaggag aatacatgaa ggcattatcg ccaatcgcag
     4741 tccttatttc cgcgctgctg ttgcaaggtt gtgttgccgc tgccgtagtg ggtaccgctg
     4801 ctgtgggtac caaagccgca actgacccac gcagtgtcgg cacccaggtg gacgatggta
     4861 ccctggaagt gcgcgtgaac agcgcattgt cgaaagacga acagattaag aaagaaaacc
     4921 gtattaatgt cacggcgtat cagggcaaag tgctgctggt tgggcagtca ccaaatgctg
     4981 aactttcggc tcgcgccaaa cagattgcta tgggcgtaga cggtgccaac gaagtgtata
     5041 acgagattcg tcagggccag ccgattggtc tgggcgaagc atctaacgat acgtggatca
     5101 ccaccaaagt gcgttcgcag ctcttaacca gcgacctggt gaaatcgtcc aacgtgaaag
     5161 tgaccaccga aaacggtgaa gtgttcctga tggggctggt gactgaacgt gaagcgaaag
     5221 cggcggcaga tattgccagc cgggtgagcg gcgtaaagcg ggtaaccaca gcgtttacgt
     5281 ttattaaata gcagcccctt gtaatgcctg atgcgacgct tgccgcgtct tatcaggcct
     5341 acaacgatgc aaaccgtagg tcggataagg cgtttacgcc gcatccgaca tgttttccct
     5401 caaatcagaa caacagcgcc agcccgccga caatcacacc agacactgcc accatcgccc
     5461 ctgtcagcca taaggctttc gccgggaacg ctttgcgcag cataatcagt gacggcaaac
     5521 tcactgccgg gagcgtcatc aacaatgcca gcgccggagc ggttcccata cctgccagca
     5581 tcatcgtttg tacaatcgga atttctgctg ccgtgggaat gacaaacaag catcctgcta
     5641 ccgccatcgc caccacccac atcaggctgt tatcgacagc accatcggca tgggggaata
     5701 accagacgcg tgcggcaccc aacaccagta ctgcaaggat gtaaaccggg atcgtactcc
     5761 agaaaagtgt ccatagcgcc ctgccccagc ggctaaaaaa accgctctgt gcttccggta
     5821 tgtcaatttc gaccggtgcc tgcgtttgcg gtgtttcacg cacccatttt tgcaccagcg
     5881 tcgcaatcag caacaccatc accagcccgg ccaccagacg aatcgccgca aaaccccagc
     5941 cgaggacaaa ccccataaac accagcgtcg ccgggtttaa caccggattg cccatccaga
     6001 atgccagcgc accgcccatc gatacctgtt ggcgacgcat ccccgccgcg accggagccg
     6061 cacagcaggt acacatcatg cccggcagcg aaaacagcgt tcccagcagc gtgccgcgaa
     6121 agcgcgattg cccaagcgaa cgcaacaacc agtcacgcgg gatcagcacc tgaatcaacg
     6181 aaccgaggat cacccccagc accgccgctt tccatactgc gaggaaatag atcatcgcgt
     6241 aatccaacgc cgcttgccac ggattagcat ccgcctgcgc aaggatagat ttaccgatac
     6301 tgtgggtttc ggctgcagta aacgctttgc cgtagtaatg ttgccatttc acataccaga
     6361 gaccggcaat gacaacgaga aagaaaagcg cgggtttcca ccactgaatg ggcgttgccg
     6421 cctgagatga agactgacca gtcatagcat tccctaggaa taagttatga taattgagcg
     6481 cgtgaatatt acgctcacta tcaattcttg ggaataatta ttcagctctt ttgcgtaatt
     6541 ctgaagagct taaaatcgtc acgccttcat gctcaggccg catcgcctct gccagcatga
     6601 cccgcgccac gtctctcgca tcaatggatt tccagttacc tggtaacaaa cggaacagcg
     6661 gcgcaaaaag cgtttcgttc atccgctgtt tgctacgatc gcccagtaac atcgacgggc
     6721 gagcaatggt caatttcggc cagttctggg caattaatgc ttcttccatc tcccctttga
     6781 cgcggttata gaaaaacggc gagtgggcat tggcccccat agcactgacc accagcatat
     6841 gctgcgcgcc cagccgccgc ccggttaatg cggtatccac taccagcgtg taatcggcat
     6901 gaataaacgc ctctttgctc cccgcttctc gccgcgtggt gccgagacaa caaaacacaa
     6961 tgtcgatggg gtcggtgacc tgcgccaacg cgtcactcag ttgcggatca tggggattaa
     7021 acaccccggg catatcgccc aacggacgtc gcgtcggcgc agcaatggcg ttaactttcg
     7081 gttcattaat caacatccgc agcaggtgac cgcccaccag ccccgttgcg cctgtaatca
     7141 gtacctgact catcttcgct cctttacaga attgtctgcc ttgcgctcca cggctcatgc
     7201 accagtctta atagaccatg aggtaattat ccccgattgt gggaaattcg cctcatccaa
     7261 tgcaacaacg cggaggaagc atgagtaaga aaattgccgt tttaatcagt gatgaatttg
     7321 aggattcaga atttacttca cccgcagacg agttccgtaa agccggacac gaagtaatta
     7381 ccattgaaaa gcaagcgggt aaaacggtga aaggcaaaaa aggagaagcc agcgtgacca
     7441 tcgataaatc catcgatgaa gtgacgccag cggagttcga tgccctgctg ctaccgggcg
     7501 gccattcacc ggattatctg cgtggggaca accgttttgt cacctttacc cgtgattttg
     7561 tgaatagcgg caaacctgtt ttcgccatct gtcacggtcc gcagctgctg atcagcgccg
     7621 atgtgattcg ggggcgcaaa ctgaccgcag ttaaaccgat cattattgat gttaaaaatg
     7681 cgggcgcgga attttacgat caggaagtcg tggttgataa agatcagctg gttaccagcc
     7741 ggacaccgga cgatctgcca gcgtttaacc gcgaggcgtt acgcctgctc ggtgcctgag
     7801 tcgcgtagcc aaatcatttt tttaccaaag cccagcgtgt tgtcggtgaa tttgatttca
     7861 tcgagccgga tttcccacac cggggccgac agcattctgg caaccggaaa gcgacgattg
     7921 tacgccttgc gcgcgaggtc gctttcctca ccttccagcc tgcggatctc acctttaaac
     7981 tgcacaccgc gaattaacgc taccgttttc ggctgaccgt ttaccgttcc ggcaaccgca
     8041 gcctgcggcc cactcatctg cgcgtggcgc gttttttctt ccgtcaaaat gtagaaggcg
     8101 actttctgcg catcaaacag ataaaaagca ttagcgcacc acagttcccc ttcctgctgc
     8161 acacaccagg tgacaacatg ttgttttgcc aaccaacggc tgatggtgat gagtgtttcc
     8221 attgctgttc tcttttatac tgtgggcctg accttaacat gcgacgcaga cgatgacacc
     8281 ctggtttctt tacttgatcc gtaccgccga caataagctt tataccggga tcaccacgga
     8341 tgtcgaacgc cgctatcagc agcaccaaag cggcaaaggg gcgaaagcac tgcgcgggaa
     8401 aggagaactg acgctggcgt tttctgcgcc agtgggcgac cgttcgctgg cactacgggc
     8461 ggaatatcgc gttaagcaac tgaccaaacg gcaaaaagag cgtctggtag cggaaggcgc
     8521 agggtttgca gaactgttga gcagcctgca aaccccggag attaaaagcg attgaaatgc
     8581 tcgtgatact caaccagacc ggttacgcca ttcagcgcgt catccgctaa acgatgtacc
     8641 tggaaggcgc tttcagtgcc cggccagcgg caacgcagat cgtgatgcgc cgccagttca
     8701 aagccgaaac gactgtacag cgccggatcg cccagcgtca ccactgcggc atagccgaac
     8761 tcattaagcg aatcgagtcc ttcatagacc agtttgcgtg ccagcccctg tccacggtat
     8821 ttttcatcaa ccgccaacgg tgccatgccg acccattgca ggtcttcgcc ctgcacatca
     8881 accggactaa atgccacata gccaatgacc tgaccttcgt catctgtcgc caccagcccc
     8941 agcgtcagaa agccatcttc acgcagatcg tgaaccagct tcgcttccgc atcactttcg
     9001 aatgagcgac gcagcagggc atcaataccc ggcgcatcaa tgggaatttc tactcgaatt
     9061 agcatggttc acctaccgat gtctgtttgg tttcaggcgc ggttttcatt cccgcctcaa
     9121 caaaatccgc cagttgcagc agcatcatgc gtaaggcttt cggcatttgc tccagttcaa
     9181 tggcgtccat caggtttttc acatacagcc ccagctccgt atcgccttca atcaccagcc
     9241 gacgctggaa gaagagcgta tctggatctt gtttacgcgc cgcaatcatc agcagatcgc
     9301 tggcgtcggc actaaaactc acatcagctt gcgcgttctg gctgaccacc agtttgccat
     9361 tcaccaccga ggtaaaccat tgcaggtcaa tatcacgcac atgaatactt aacctgcggc
     9421 cttcaagaaa ctccagctcg ccatcatcca gcgcctgacg gaattgccag cttaagacct
     9481 gctcaagaac ctggcgtttt agcgcaaatg gcgtcagttt taccggtaca ctcaacagag
     9541 atggccccaa atgcacaata cgggaacgca gtttattcaa cacgagtttt actccctgtt
     9601 tcaacaatca tcctattttg ccatatcaga aaaataacat agcggtataa atcaacaatt
     9661 ccatatgaaa ttgctgctac caccaataca actttaactg ccttaaatca aaaattgtcg
     9721 cagcaaggtt aactaaaatc ccagttcgtt aacatttttg cgttttgata gcgcaacctt
     9781 caggaaaaat tatggagctg ctctgccctg ccggaaatct cccggcgctt aaggcggcca
     9841 tcgaaaacgg cgcagatgct gtttatatcg ggctaaaaga tgataccaat gcccgtcact
     9901 tcgccggcct taactttacc gagaaaaaat tgcaggaagc ggtgagtttt gtccatcaac
     9961 atcgccgcaa acttcacatc gcgattaaca cttttgcgca tccggacggt tacgcccgtt
    10021 ggcagcgcgc cgtggatatg gcggcgcagc tgggtgccga cgcgctgatc ctcgccgacc
    10081 tcgccatgct ggaatacgcc gccgagcgtt atccgaatat tgagcgccac gtatcggtgc
    10141 aggcttcggc gaccaatgaa gaggcgatta acttttatca tcgccatttt gacgttgccc
    10201 gcgtggtgct gccgcgcgtg ttgtcgattc atcaggtgaa acagctggca cgggtcacac
    10261 ctgtaccact ggaagtgttt gctttcggca gcctgtgcat tatgtcggaa ggccgttgct
    10321 atctgtcgtc gtatctgacg ggtgagtcgc ctaacaccgt gggcgcgtgt tctccggccc
    10381 gtttcgtgcg ctggcaacaa acgccgcagg ggctggaatc ccgcctgaac gaagtgctga
    10441 tcgaccgtta tcaggacggc gaaaacgcag gttatccgac gctgtgtaaa gggcgttatc
    10501 tggtggacgg cgagcgctat cacgcgctgg aagaaccaac cagtctcaat accctggaac
    10561 tgctgccgga gttaatggcg gcgaatattg cttcggtgaa aattgaaggc cgccagcgta
    10621 gcccggcgta tgtcagccag gtggcgaaag tctggcgtca ggctatcgac cgttgtaagg
    10681 ccgatccgca aagcgcgtgg atggagacgc tcgggtcgat gtccgaaggc acgcagacca
    10741 cccttggcgc gtatcaccgt aaatggcagt gagaagagca atgaaatatt ccttagggcc
    10801 agtgctgtgg tactggccaa aagagacgct ggaagatttt tatcagcagg ccgccaccag
    10861 cagcgccgac gtgatttatc ttggtgaagc ggtatgcagc aagcgccggg caaccaaagt
    10921 tggcgactgg ctggagatgg caaaatcgct cgccggaagt ggcaagcaga ttgtgctctc
    10981 cacgctggcg ctggtgcagg catcctctga actgggcgaa ctgaaacgct atgttgagaa
    11041 cggtgagttt ctgattgaag ccagcgatct cggcgtggtg aatatgtgcg ctgaacgcaa
    11101 actgccgttc gtcgccgggc acgcgctgaa ctgctacaac gcggtgacgc tgaaaatatt
    11161 gctcaaacag ggcatgatgc gctggtgtat gccggtggag ctttcccgcg actggctggt
    11221 gaatctgctt aatcagtgcg atgagctggg cattcgcaac cagtttgaag tggaagtcct
    11281 gagctacggt catctaccgc tggcctactc cgctcgctgc tttaccgcgc gttcggaaga
    11341 ccgcccgaaa gatgagtgtg aaacctgctg cattaagtat ccgaacgggc gcaacgtgct
    11401 gtcgcaggaa aaccaacaag tgtttgtact caatggcatt cagaccatga gcggctacgt
    11461 ttacaacctc ggtaacgagc tgacatccat gcagggattg gttgatgtgg tccgcctgtc
    11521 accgcagggt actgacactt tcgcgatgct cgacgccttc cgcgctaatg aaaatggcgc
    11581 tgcgccacta ttgttgacgg caaacagcga ctgtaacggc tactggcggc ggctggcagg
    11641 actggagctg caagcctaag taaatatgct cgtcatactt caagttgcat gtgctgcatc
    11701 tgcattcgtt caccccagtc acttacttat gtaagctcct ggggattcac tctcttgtcg
    11761 ccttcctgca actcgaatta tttagagcac agctcacttt gttaacaact ttaactactc
    11821 tttaatgcag tattaaagat taatcggtaa caaagtgagc tgttatgact gataaaacca
    11881 ttgcgttttc gctactcgat ctggccccca ttcccgaagg ttcttcagcg cgagaagcat
    11941 tctcccactc tctcgatctc gcccgtctgg ctgaaaagcg cggctatcat cgctactggc
    12001 tggcagaaca ccacaatatg actggcattg ccagtgctgc cacgtcggta ttgattggct
    12061 atctggcggc gaataccacc acgctgcatc tggggtctgg cggcgtgatg ttgcctaacc
    12121 actcaccgtt ggtcattgcc gaacagttcg gcacgctcaa tacactctat ccggggcgaa
    12181 tcgatttggg gctggggcgt gcgtcaggta gtgaccaacg gacaatgatg gcgctgcgtc
    12241 gccatatgag cggcgatatt gataatttcc cccgcgatgt cgcggagctg gtggactggt
    12301 ttgacgcccg cgatcccaat ccgcatgtgc gcccggtacc aggctatggc gagaaaatcc
    12361 ccgtgtggtt gttaggctcc agcctttaca gcgcgcaact ggcggcgcag cttggtctgc
    12421 cgttcgcgtt tgcctcacac ttcgcgccgg atatgttgtt ccaggcgctg catctttatc
    12481 gcagcaactt caaaccgtcg gcacgactgg aaaaaccata cgcgatggtg tgcatcaata
    12541 ttatcgccgc cgacagcaac cgcgatgccg aattcctgtt tacctcaatg cagcaagcct
    12601 ttgtgaagct gcgccgcggc gaaaccgggc aactgccgcc accgattcaa aatatggatc
    12661 agttctggtc gccgtccgaa cagtatgttg tgcagcaggc gctgagtatg tcgttggtag
    12721 gtgataaagc gaaagtgcgt catggcttgc agtcgatcct gcgcgaaacc gacgctgatg
    12781 agattatggt caacgggcag attttcgacc accaggcgcg gctgcattcg tttgagctgg
    12841 cgatggatgt taaggaagag ttgttgggat agtgtgtctt aacgtgggaa gccttatccg
    12901 agctggcaac gctgtcctac gtagacctga taagcgaagc gcatcaggca ttgtgtaggc
    12961 agcagaaatg tcggataagg caccgctgat tactgataca ccggcagtaa attaaagctc
    13021 gataaaatat gtaccaatgc gttgccgacg ccaaacacca gaatcagcgt aatcatcggc
    13081 ttgccgcccc agacgcggaa tttcgggctg ccaaagcgtt tacgcgatgc gcgggccagc
    13141 agtgccggaa caattgccgc ccagatggta gccgctaaac cagcataacc aatggcgtac
    13201 aggaatccat tcgggaacag cagaccaccc acaacaggcg gtgcaaaggt caacaatgct
    13261 gttttcaagc ggcccatagc cgagtcatcg aaaccaaaca gatctgccag atagtcaaac
    13321 aaacccagcg ttacgccaag gaacgaactc gctaccgcaa agtttgagaa cacgaccagc
    13381 agaaggtcca ggctacggct gttcagcacg ccgcttaatg cctgtaccag cacatcaata
    13441 ttaccgccct tctctgcaat accgataaac tccggacgcg ggatgttacc catcgtcgcc
    13501 agcaaccaga tggtatacag cgccagtgcc atcagcgtac cgtacaccag gcatttcacg
    13561 atggttttcg gatctttgcc gtaatacttc atcaggcttg gcacgttacc gtgataacca
    13621 aacgacgcca ggcagaacgg caatgtcatc agcagatacg gcgcataaga tgcattgctt
    13681 tctgcaacgt tgaacaatgt cgcaggctgc acatgcccca acaggctgcc aaaggtgagg
    13741 aagaaggtaa tgactttcgc ccccagcaca atcgccgtca tgcggctgac ggccttagta
    13801 ctcaaccaca ccacaaacgc taccagcagt gcaaaaccaa aacccgccgc ccgtgccggg
    13861 acgtttagcg acatctctgc gaaggtgtga tgcagaattg aaccactggc agaaatatag
    13921 gcataggtca ggatatagag cacaaaggca atggaaatac cgttgaccac gttccagcct
    13981 ttgcccagca aatctttggt gatggtgtca aaactcgaac cgattcggta attcaggtta
    14041 gcttccagaa tcatcaagcc ggaatgcagc atacagaacc aggtaaagat cagcgccgcc
    14101 attgaccaga aaaaccacgc cccggacatg accactggca gagaaaacat ccctgcgcca
    14161 ataatggtgc cgccgataat caccacgccg ccaagcagcg acggtgacgt ttgggtggtg
    14221 gttagtgttg ccatgagggc ttctctccag tgaaaaatag tgcgactgcg ttgttatgca
    14281 ttgcactgta ccagtacgcg agtacaaaag acagaaaaaa agccccgatg gtaaaaatcg
    14341 gggctgtata tattatttta cagattgtgt tcgctgttca gcgatgatta cgcatcacca
    14401 ccgaaacgac gacgaccggt agagtcatca cgacgcggag cgcggccttc acgacgttcg
    14461 ccgctaaaac gacgaccatc accacggcca ccttcacggc gttcaccgct gaagttacga
    14521 ccgccttcac gacgttcgcc accgaaacca cgaccaccgc cacgacgctc accgccagta
    14581 tgcggctgtg catcgcccag taactgcatg ttcatcggct tgttgagaat gcgagtgcgc
    14641 gtaaagtgtt gcagcacttc acccggcata cctttcggca gttcgatggt ggagtgagaa
    14701 gcaaacagct tgatgttacc aatgtaacgg ctgctgatgt cgccttcgtt agcaatcgca
    14761 ccaacgatat gacgaacttc aacaccatca tcacggccca cttcaatgcg gtacagctgc
    14821 atatcgccaa catcacgacg ttcacgacgc ggacgatctt cacggtcacc acgcgggcca
    14881 cggtcgttac gatcgcgcgg accacggtca tcacggtcac ggaattcacg tttcggacgc
    14941 atcggcgcat ctggcggtac gatcagagta cgttcaccct gtgccatttt cagcagtgcc
    15001 gcagccagag tttcgagatc cagctcttca ccttctgcag tcggctgaat tttgctcagc
    15061 agtgcgcggt attgatccag atcgctgctt tccagctgct gctgtacttt agcggcgaat
    15121 ttttccagac ggcgtttgcc cagcagttct gcgttcggca gttctacttc cggaatagtc
    15181 agcttcatag tacgttcaat gttgcgcagc agacgacgct cgcggttctc aacgaacagc
    15241 agcgcgcggc cagcacgacc cgcacgaccg gtacgaccga tacggtgaac gtaagactca
    15301 gaatccatcg ggatatcgta gttaactacc aggctgatac gctcaacgtc caggccacgg
    15361 gctgcaacgt cggtcgcaat caggatgtcc agacgaccat ctttcaggcg ttccagtgtc
    15421 tgttcacgca gcgcctggtt catgtcaccg ttcagcgcgg cgctgttgta gccgttacgc
    15481 tcaagagctt cagccacttc cagagtcgcg tttttggtac gaacgaagat aatcgccgca
    15541 tcaaaatctt ccgcttccag gaaacgtacc agtgcttcgt ttttgcgcat accccagaca
    15601 gtccagtagc tctggctgat gtcaggacgg gtagtcacgc tggactgaat gcgcacttcc
    15661 tgcggctctt tcataaagcg gcgggtaatg cgacgaatcg cttccggcat ggttgcagag
    15721 aacagagcgg tctgatgacc ttccgggatc tgcgccataa tggtttcaac gtcttcgatg
    15781 aagcccatgc gcagcatttc gtcagcttca tccagaacca gaccgctcag tttagagagg
    15841 tccagagtgc cacgtttcag gtggtccagc agacggcccg gagtaccgac aacgatctgc
    15901 ggcccctgac gcagggcgcg taattgcacg tcataacgct ggccgccgta cagagcaacc
    15961 acatttacgc cgcgcatgtg tttagagaaa tccgtcattg cttcagcaac ctgtaccgcc
    16021 agttcgcggg tcggtgccag caccagaatc tgtggtgctt tcagctcagg atcaagattc
    16081 tgcaacagag gtaaagagaa tgctgcagtt tttccgctcc ccgtctgggc catacccaga
    16141 acgtcgcggc cattcagcag atgtggaata cactctgcct gaattggaga tggtttttcg
    16201 taacccagat cgttaagggc ttcaaggata ggagccttca ggcccagatc tgcaaaagtg
    16261 gtttcgaatt cagccatgta gtacgtgtgc ctcaaaatta atggcggcca gtctacataa
    16321 ctcatcatga aattgatcag caattttcat tgaaaagtgt gaaccggctc aaagtaggtg
    16381 tattaacgaa caacaacgcc ctcacccgtt aaggtgatgg caatcaaaaa agattacggg
    16441 ctgatgtgta cgtcagctat tgctggtccg attctgccag gtcatcttgg tcctggccca
    16501 ggagcgataa ttccaacaat gcgtatcggt gctcaacaaa gttatgaacg ttgttgacaa
    16561 ccgccagttt gaacagtgcc gtggcgctgt ccaaatcccc cagacttagg tagtacttac
    16621 ctaaatagaa gttggtttca ctgagatgct cagcgagcga ggtgttatcc gttgcgtccg
    16681 ccttgagcct ttccattaac gtttgttcgc taatgttgcc caggtagaac tcgacaatgt
    16741 tccatcccca ctgttcctta tccgattttt cgaagtgctg tttcaacact tctttagcct
    16801 gcttctcatc gagcttctgc tcggcgagat aaagccacag actacggaaa ggatcattgg
    16861 gatcgtcttg ataaaacgcc agcagatcat cttgcgctaa cttgtcacga ccgccgtaat
    16921 ataatgcgat cccgcgattc aagtgcgcgt agttgtaagt tggatcaagc tcaagtacag
    16981 aatcaaacgc ttcataggca gcatcaaaat tgcctgcctg cgttaaatat atgcctaagt
    17041 aattgaacac ttcaggcata tccggtcgga ttgccagcgc ttgcgaaaaa tcgttacgcg
    17101 ctaatgccct cagaccgaga ctatcataca acactccgcg ctcatataaa agctgtgcgc
    17161 gttcgtcatc ggttaaagcc cgactggcaa ggatttgttc catacgtgcc agaatcactt
    17221 cctgctgtaa agtcggttgc aatggtaccg cgaggacttc acttttacgc caggaagtat
    17281 tactgcatcc tgcaagcgta agtgctgtcg caacgaaaca ccagcgcaaa aaaggcttca
    17341 tttcccactc ccgaagacca cggttgaatg aacgtcctgt tcccggttgc taacaaggcg
    17401 tcctgcccgg ttaaaagccc cccgccgcag cggagggcaa atggcaacct tactcgccct
    17461 gttcagcagc cggagcttcc ggtgctgcag caggttgaga ctgctcagtc gcttctttaa
    17521 tgctcagacg gatacggccc tggcgatcaa cttccagaac tttcaccggt acttcctgac
    17581 ccatctgcag gtaatcggtc actttctcaa cgcgtttgtc agcgatttga gagatgtgga
    17641 ccagaccttc tttaccgccg ccgatggcaa caaatgcgcc aaagtcaacg atacgggtca
    17701 ctttaccagt gtagacgcgg cccacttcga tttctgcagt gatctcttcg atacgacgaa
    17761 tagcatgttt cgctttctcg ccgtcggtcg ctgcgatctt cacagtaccg tcatcttcga
    17821 tttcgatggt agtgccagtt tcgtcggtca gggcacggat aacagagccg cctttaccga
    17881 taacgtcttt gatcttgtcc gggttgatct tgatggtatg gatacgcggt gcgaactcag
    17941 agatatcgcc acgcggcgcg ttgatcgcct gttccattac gcccaggata tgcagacgcg
    18001 cacctttagc ctggttcagc gcaacctgca tgatctcttt ggtgatacct tcaattttga
    18061 tatccatctg caatgcagag ataccctcgc gggaacccgc aactttgaag tccatatcgc
    18121 ccaggtgatc ttcgtcgccc aaaatgtcag acagtacaac gtagttgtcg ccttctttca
    18181 ccagacccat tgcgataccc gcaacggcag ctttgatcgg cacacctgcg tccatcagcg
    18241 ccagagacgc gccgcacacg gaagccatag aagaggaacc gttggattca gtgatttcag
    18301 acacaacacg tacggtgtac gggaatttgt ccatatccgg catgactgcc agcacgccgc
    18361 gcttcgccag acgaccgtga ccaatttcac gacgcttcgg agaaccgacc atgccggttt
    18421 cgcctacgga gtacggaggg aagttgtagt ggaacaggaa ggtatcggta cgttcgccca
    18481 tcagttcatc aagaacctgc gcgtcacgag cagtacccag cgttgcggta accagcgcct
    18541 gcgtttcacc acgggtgaac agcgcagaac cgtgagtacg cggcagcacg ccagtacgca
    18601 catccagacc acggatcata tctttttcac gaccgtcgat acgcggttcg cctgccagta
    18661 cgcggctacg aacaacgttt ttctcgatag cgtgcagaat ttcacccagt tcgttttcgt
    18721 ccagggtttc gtcttcagca agcagcgtcg cgatggtttc agatttgatg acatcaacct
    18781 gcgcataacg ctcttgtttg tcggtgatgc ggtaagcatc gctcaggcga gcttcagcca
    18841 gtgcagcaac gcgcgcgttc agcgcttcgt ttaccggctc cggctgccag tcccaacgtg
    18901 gtttaccggc ttctttcacc agttcattga tgttctgaat aacaacctgc tgttgttcat
    18961 gaccgaacac tactgcgccc agcatctggt cttcgctcag cagttcagct tcagattcaa
    19021 ccatcagaac agcggcttca gtaccggcaa caaccagatc cagtttgctc tctttcagct
    19081 cgtcctgagt cgggttcagt acgtactggt cattgatgta acctacgcga gcagcaccaa
    19141 tcggaccatt gaacggaata ccagacagag acagtgctgc ggaagcacca atcatcgcga
    19201 cgatatccgg gttaacttgc gggttaacag aaaccacggt ggcgataacc tgaacttcgt
    19261 tgacgaagcc ttccgggaac agcgggcgaa tcgggcggtc aatcagacgc gcgatcaggg
    19321 tttcgccttc gcttggacga ccttcacgac ggaagaagct acccgggata cgaccagcag
    19381 cgtaggtacg ctcctgatag ttaacggtca gtgggaagaa gtcctgacct ggtttggctt
    19441 ttttctggcc aacaacggta acaaataccg cggtgtcatc catgctaacc ataacagcgg
    19501 cagtagcctg acgagccatc atgccggttt ccagagtcac ggtgtgttgg ccgtactgga
    19561 atttacgaac gatcggatta agcaatgtaa tatcctttct ctttcttaga cagtacctta
    19621 cggcactggt gttaataccc gatcttctgc gcatcctcgc gactaatgac aaccctaacc
    19681 cagctctatg tgggtaaagc ctctcattag ccgcgcgaac ctctgcaacg gaagatcatt
    19741 catagcaaca atacattagt ttccagtgaa ttgctgccgt cagcttgaaa aaaggggcca
    19801 ctcaggcccc cttttctgaa actcgcagga attagcgacg cagacccagg cgctcgatga
    19861 gctgggtgta acgtgctacg tctttacgtt tcaggtagtc gagcagttta cgacgctgag
    19921 aaaccatgcg cagcagacca cgacggctgt ggtgatcttt tttgtgctct gcaaagtggc
    19981 cctgcaggtg gttgatctgt gcagtcagca gtgctacctg aacttcggta gaaccggtgt
    20041 cgtttgcgtc acgaccaaac tcagaaacga ttttagctgt tgcttcagta cttagagaca
    20101 ttttaaaact ccaaagtata tagaatgaaa ggacgccgat ctctaattca gcgatcccag
    20161 tgtacgttac gcaaagtgtt aaacaattta cgcgacgtta agcggcagta ttctactcgt
    20221 agcgacctgt tatcgcaaga cggttaacat tacgccgggt attcaaccac caggcgacga
    20281 ggcgcgacgc ggccttcatc gtcaatttcg cccataccga taaacttgcc gttctcacct
    20341 tctgtaacgc gaaccagtcc ttccagcggc gcaccggatg tacgaactgg gttaccattt
    20401 ttgaagtaaa cagaagacgt taacggaaga ttcaccaccg ggtagtccga agctggactg
    20461 tccattggca tcagtaatgg atcaagtaac tccgcagccg gaatatcctg ctgttcggct
    20521 tgttcgacca gttcacgcag atgttccagg gtcaccatcc gttcaaccgg atatttactt
    20581 accgccagac gacgcaggta aataacatgc gcgccacaac cgagtttttc acccaggtca
    20641 tcaatgatgg tgcggatata agtgcctttt gagcagtgaa tttccagctc cagctcattg
    20701 ccttcgtggc gaataaacag caattcataa acggtaatcg ggcgcgcttc acgcggtact
    20761 tcaatgccct gacgcgcata ttcgtacagt tttttaccct gatatttcag tgctgaatac
    20821 atcgaaggga tctgttcgat atcgccacgg aaagtatcca gcgccgccgc cagttgctct
    20881 gcgctaaagg ttaccggacg ttcttcaacg atttgtccgt cggcatcaga agtatcggta
    20941 cgctgtccaa gacgcgcaat gacccgatag cgtttgtcgg agtccagcag atactgggaa
    21001 aacttcgtcg cttccccgaa gcaaattggc aacatgccag ttgccagcgg gtccagagca
    21061 ccggtatgcc cggcacggtt ggcgttataa atccgtttca ctttttgcag cgcatcattg
    21121 ctggacatac cctgcggttt atccagcaac aaaacgccgt taatgtcgcg accgcgacga
    21181 cgaggacgac tcattagtcc tccttgctgt cgtccgggtt aacacgacgt tcttcgtcat
    21241 gtttgaccac gctggtcacc aggtttgaca tgcgcatccc ttcaaccaga gagttgtcgt
    21301 agaagaaggt cagttccggc acgatacgca ggcgcatcgc tttccccagc aggctgcgga
    21361 tgaaaccaga agcttcttgc aacgctttga tgcccgcttt aaccgcgtct tcatctttgt
    21421 cgttgaggaa cgtcacatat actttggcat acgccaggtc gcgagacatt tcgacaccgg
    21481 aaacggtggt catcatgccc aggcgaggat ctttaatttc acgctgcagg atgagagcga
    21541 tctctttttg catttcctgc gctacgcgct gcgggcgacc aaattctttc gccataataa
    21601 attctcctga caaaaaaggg gctgttagcc cctttttaaa attaatttca ggtggaaggg
    21661 ctgttcacgt tggcctgata agacgcgcca gcgtcacatc aggcaatcca tgccggatgc
    21721 ggcgtaaacg ccttatcccg catggaaccc taaaaacctt aagcgatggt acgttggatc
    21781 tcgatgattt cgaatacttc gatcacatcg ccagtgcgga cgtcgttgta gttcttaacg
    21841 ccgataccac attccatacc gttacggact tcgttaacgt catctttgaa gcggcgcagg
    21901 gactccagct cgccttcgta gataaccacg ttgtcacgca gaacgcggat cgggttgtga
    21961 cgtttaacca caccttcggt aaccatacag cctgcgatgg caccaaattt cggcgatttg
    22021 aacacgtcac gaacttccgc cagaccgata atctgctgtt tcagttccgg agacagcata
    22081 ccgctcatcg ccgctttcac ttcgtcaatc aggttataga tgacggagta gtaacgcaga
    22141 tccaggcttt ccgcttcaat cactttacgt gcagaggcat cagcacgtac gttgaagcca
    22201 accaggatgg cgttggatgc cgcagccagg gtggcgtcgg tttcggtgat accacctacg
    22261 ccagaaccga tgatcttcac tttaacttcg tcagtagaca gtttcagcaa ggagtcggag
    22321 atcgcttcca cagaaccctg tacgtctgcc ttcaggacga tgttcacttc gtgaacttcg
    22381 ccttcggtca tgttggcgaa catgttctcg agtttagatt tctgctgacg cgccagttta
    22441 acttcgcgga atttaccctg acgatacagt gcaacttcac gcgctttctt ctcgtcacgt
    22501 acaacggtaa cttcatcacc cgcagccggt acgccggaca ggccgaggat ttccaccgga
    22561 atggacggac ccgcttccag cacttcctga cccagttcgt tacgcatcgc acgaacacga
    22621 ccgtattcga agccacacag aacgatatcg cccttgtgca gagtaccttc acgtaccaga
    22681 acggtagcaa ccggaccacg acctttatcg aggaaggatt cgataaccgc accgctcgcc
    22741 atacctttac gtaccgcttt cagctccaga acttccgcct gcagcaggat agcgtccagc
    22801 agttcatcga tgccggtacc cgctttcgca gatacgtgta cgaactggct ttcaccgccc
    22861 cactcttctg gcaggatgcc atactgggag agttcgttct taacacgatc cggatcggct
    22921 tctggtttat caatcttgtt cactgcaacc accaccggta cctgcgccgc tttcgcgtgc
    22981 tggattgctt cgatggtctg cggcatcacg ccgtcgtcgg cagcaacaac caggactacg
    23041 atgtccgttg cctgcgcacc acgagcacgc attgaagtaa acgcggcgtg ccctggggtg
    23101 tccaggaagg tgatcatgcc gttttcagtt tcaacgtggt atgcaccaat gtgctgggta
    23161 atgccgcccg cttcgccaga ggccactttc gttgaacgaa tgtagtccag cagagaggtt
    23221 ttaccgtggt caacgtgacc catgatggtc acaaccggcg cgcgcggttc agccgcagcc
    23281 cccgtgtcac ggtcgctcat taccgcctct tccagctcgt tttcacgacg caggataact
    23341 ttgtggccca tctcttcagc aaccagctgt gcggtttcct gatcgataac ctggttgatg
    23401 gttgccattg cgcccagttt catcatcgct ttgatgacct gagagccttt aaccgccatc
    23461 ttgttcgcca gttcgccaac ggtgatggtt tcgccgatca caacgtcacg gttaacggcc
    23521 tgagctggct tctggaagcc ttgctgcagg gaagaacctt tacgttttcc gcctttacct
    23581 ccacgtactg ctgcgcgagc ttcttcacga tcagcttttg attcagcgtg tttgttgctt
    23641 ttcttcggac gcgctgcttt cgcgttacga ccacggccac ggccgccttc gacttcacga
    23701 tcgctttcgt cttctgcctg gcgagcatgt tgagaagtag tgacgtgata atcgctggaa
    23761 tcttcagtcg gttccgcgtt atcagtccat ttgttttctt ccgccatacg acgtgcttct
    23821 tcagcaacgc gacgtgcttc ttcttcgagt ttacgacgcg cttcttcttc agctttacgc
    23881 ttgagctctg cagcttcctg ctcacggcgg gctttttcag cctgggcgtt tttagtcata
    23941 tcgtcttgtt gattgctcac tttgtctttt tccgcagctt cacgtttcgc ttgttcagca
    24001 gcttcacgct tagcttgttc tgcggcctca cgttcagctt tttgttgcgc ctcgcgttta
    24061 gccgattctt ctgcctcacg acgggcttgc tcttccgctt cacgctgcgc ttgctcttcc
    24121 gctgcaaggc gttcagcctc ttgcggatcg cgtttcacaa aggtgcgttt cttgcggact
    24181 tcgatttgta ccgatttgct ttttccaccg gtaccaggaa tgttaagggt gctgcgtgtt
    24241 ttacgttgca gcgtcaattt gtccgggcct gaatttttct gattcaggtg gtcaatcaaa
    24301 gtctgtttct cttttgcgga cacagagtcg tcagcagact tccggatacc tgcatcagca
    24361 aattgctgta ccaggcgttc cacggaggtc tgtcgctctg cggccagcgt tttaatcgtt
    24421 acatctgtca tgctgttcct tcctgctaca gtttattacg cttcgtcacc gaaccagcaa
    24481 atattacggg cagccataat cagtgctccg gctttttcgt cggtcacccc ttcgatatca
    24541 gccagatcat caatgccctg ttcggcgaga tcttccagcg tacaaacgcc acgggcggcc
    24601 agtttgaatg ccaaatcacg atctatccct tcaaggttca gcagatcgtc agccggtttg
    24661 ttatcaccga ggctttcttc ctgggcctgt gcaatggtgg ccagtgcatt tttagcacgc
    24721 tcgcgcagtg cttcaacggt cggctcatca aggccttcga tttccaacag ctctttcatc
    24781 ggcacatagg ccagttcttc cagcgtcgag aagccttctt ctaccagaac agtcgcgaag
    24841 tcttcgtcga tgtcgagata tttggtgaag gtgtcgatcg ctgcgtgcgc ttccgcctga
    24901 tgcttagcct gcaggtcgtc aacggtcatc acgttgagtt cccaaccgct cagctgcgaa
    24961 gccagacgca cgttctgacc gttacggcca atcgcctgcg ccaggttacc ggcttcaacg
    25021 gcgatatcca tggtgtgttt atcttcatcc accacgatag aagcaacgtc tgccggtgcc
    25081 attgcgttaa tcacaaactg cgccgggtta tcatcccaca ggacgatatc gatacgctcg
    25141 ccgcccagtt cagtagaaac cgcctgaaca cgcgcgccac gcatacctac acaggcacct
    25201 accggatcga tacgtttatc gttggttttc accgcgattt tcgcacgaga acccggatcg
    25261 cgagccgctg ctttaatttc aatcacttct tcgccgattt ctggcacttc aatacggaac
    25321 agttcgatca gcatttccgg cttggaacga gtgacgaaca gttgcgcgcc acgcgcttcc
    25381 gggcgaacgg aatagagcac gccacgaacg cggtcgccag ggcggaagtt ttcacgcggc
    25441 agcatatctt cgcgcaggat cacggcttca gcattgttgc ccagctccag agagatgttg
    25501 tcgcggttta cttttttcac cacgccggtg atgatttcac cttcgtgttc acggaactga
    25561 tcaaccacca tcgcacgttc ggcttcacgc actttctgca cgataacctg ttttgccgtc
    25621 tgggtagtga tacggtcaaa ggtaacagac tcaatctgat cttcaacgta atcgcccagg
    25681 ttcaggcttt catcttcata acgtgcggct tcaagggtga tttccttggt cggctgggtg
    25741 acttcatcaa caactaacca gcgacggaag gtgtcaaaat caccgctttt gcgatcgatc
    25801 tgtacgcgga cgtcgatctc ttgttcatat tttttctttg ttgctgtcgc cagcgcgctt
    25861 tccaatgctt cgaaaatctt ctcgcgaggt agcgcctttt cattggatac ggcttcaact
    25921 acagccaaaa tttctttgtt catcgcgggc ttttcacctc atccagacta ttaaaagtgg
    25981 ggaacctggt tcgccttctg gatattactc agcgcgaaca cttcatcttt accttcgacg
    26041 gtaactgtga tcatttcacc gtcaaccgct ttgataacgc cctgccattt acgacggttt
    26101 tgtaccgcca tacggagaac cagagtcacc tcttctccga caaaacgggc gtagtgttca
    26161 gccgtgaaca gtgggcgatc gagacccggt gaggagactt ccaggttata agcaacggtg
    26221 atgggatctt caacatccag cacagcactt acctggtggc tcacatcagc acaatcatca
    26281 acattgatgc catcttcact atcaatatag atgcgcagtg tggatgtgcg accgcgaata
    26341 aattcgatgc caaccagttc aaaacccagg gcctcaactg gcgcagtaat catctctgtt
    26401 aatttttgct ctaatgtgga caagcccacc cccaagacat aaaaaaaggg cctaaagccc
    26461 agttattctg tagtcagata acaaaaaacc ccgataaatc ggggctttat ataactgaac
    26521 cctataaccg caactgcggt ctggagcact ttccagaagg attttttcaa atcccactac
    26581 gaaggccgaa gtcttcacag tatatttgaa aaaggactct aagggaaagt ggttgcgggg
    26641 gccggatttg aaccgacgac cttcgggtta tgagcccgac gagctaccaa gctgctccac
    26701 cccgcgcctg aaacgcggca aattctactc gttttgggta aaagatgcaa atactgctgg
    26761 gatttggtgt accgagacgg gacgtaaaat ctgcaggcat tatagtgatc catgccacat
    26821 tttgtcaacg tttattgcta atcacgtgaa tgaatatcca gttcactttc atttgttgaa
    26881 tacttttgcc ttctcctgct ctcccttaag cgcattattt tacaaaaaac acactaaact
    26941 cttcctgtct ccgataaaag atgattaaat gaaaactcat ttattttgca taaaaattca
    27001 gtgagagcgg aaatccaggc tcatcatcag ttaattaagc agggtgttat tttatgacga
    27061 cgattctcaa gcatctcccg gtaggtcaac gtattggtat cgctttttct ggcggtctgg
    27121 acaccagtgc cgcactgctg tggatgcgac aaaagggagc ggttccttat gcatatactg
    27181 caaacctagg ccagccagac gaagaggatt atgatgcgat ccctcgtcgt gccatggaat
    27241 acggcgcgga gaacgcacgt ctgatcgact gccgcaaaca actggtggcc gaaggtattg
    27301 ccgctattca gtgtggcgca tttcataaca ccaccggcgg cctgacctat ttcaacacga
    27361 cgccgctggg ccgcgccgtg actggtacca tgctggttgc tgcgatgaaa gaagatggcg
    27421 tgaatatctg gggtgacggt agcacctata aaggaaacga tatcgaacgt ttctatcgtt
    27481 atggtctgct gaccaatgct gaactgcaga tttacaaacc gtggcttgat actgacttta
    27541 ttgatgaact gggcggccgt catgagatgt ctgaatttat gattgcctgc ggtttcgact
    27601 acaaaatgtc tgtcgaaaaa gcctactcca cagactccaa catgcttggt gcaacgcatg
    27661 aagcgaagga tctggaatac ctcaactcca gcgtcaaaat cgtcaacccg attatgggcg
    27721 tgaaattctg ggatgagagc gtgaagatcc cggcagaaga agtcacagta cgctttgagc
    27781 aaggtcatcc ggtggcgctg aacggtaaaa cctttagcaa cgacgtagaa atgatgctgg
    27841 aagctaaccg catcggcggt cgtcacggcc tgggcatgag cgaccagatt gagaaccgta
    27901 tcatcgaagc gaaaagccgt ggtatttacg aagctccggg gatggcactg ctgcacattg
    27961 cgtatgaacg tctgttgacc ggtattcaca acgaagacac cattgagcag tatcacgcgc
    28021 atggtcgtca gttgggccgt ctactgtacc aggggcgttg gtttgactcc caggcgctga
    28081 tgctgcgtga ctctctgcaa cgctgggttg ccagccagat cactggtgaa gttaccctgg
    28141 agctgcgccg tgggaacgat tattcaatcc tgaataccgt ctcagagaac ctgacctaca
    28201 agccagagcg tctgacgatg gaaaaaggcg actcggtgtt ctcgccagat gatcgtattg
    28261 gtcaattgac catgcgtaat ctggatatca ctgatacccg agagaaactt tttggttatg
    28321 ccaaaactgg cctgctctcc tcctctgcca cttcaggcgt gccgcaggtg gagaatatgg
    28381 aaaacaaagg ccagtaattc gacatcaacc ctgcccttca gggggg
//
LOCUS       DAJVUN010000040        28269 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.040, whole genome shotgun sequence.
ACCESSION   DAJVUN010000040 DAJVUN010000000
VERSION     DAJVUN010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 28269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28269
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.040"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..446
                     /locus_tag="OQQ76_001388"
     CDS             <1..446
                     /locus_tag="OQQ76_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS110-like element ISEc11 family transposase"
                     /protein_id="HCS1967939.1"
                     /translation="IEDIEKQLTSVARQNETCKRLLDIPGVGPLIATAAVATMGEASA
                     FKSGREFAAYVGLVPKQTGSGGKVRLLGISKRGDTYLRTLFIHGARAVALVAKEPGPW
                     ITELKKRRPASVAIVAMANKLARTVWAITAHDRKYDRNHVSIRPY"
     gene            1157..4342
                     /gene="rne"
                     /locus_tag="OQQ76_001389"
     CDS             1157..4342
                     /gene="rne"
                     /locus_tag="OQQ76_001389"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HCS1967940.1"
                     /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG
                     KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV
                     QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL
                     PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF
                     RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE
                     SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL
                     RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL
                     SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY
                     LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE
                     AMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA
                     QPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD
                     TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRR
                     RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV
                     VAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS
                     RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV
                     EEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTH
                     PEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEVAETAEVVVAEPE
                     VVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPHHSDWQR
                     PTFAFEGKGAAGGHTATHHASAAPARPQPVE"
     gene            complement(4539..5492)
                     /gene="flgL"
                     /locus_tag="OQQ76_001390"
     CDS             complement(4539..5492)
                     /gene="flgL"
                     /locus_tag="OQQ76_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HCS1967941.1"
                     /translation="MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPI
                     AASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTL
                     SDDDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESI
                     KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADS
                     EADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMS
                     DLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK"
     gene            complement(5504..7147)
                     /gene="flgK"
                     /locus_tag="OQQ76_001391"
     CDS             complement(5504..7147)
                     /gene="flgK"
                     /locus_tag="OQQ76_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HCS1967942.1"
                     /translation="MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA
                     NSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS
                     TSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNI
                     AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS
                     VQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRMTVAYVDGTAGNIEIPEKLLN
                     TGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPA
                     VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKV
                     AFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEKDAGDSDNRNGQ
                     ALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSIS
                     GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR"
     gene            complement(7213..8154)
                     /gene="flgJ"
                     /locus_tag="OQQ76_001392"
                     /pseudo
     CDS             complement(7213..8154)
                     /gene="flgJ"
                     /locus_tag="OQQ76_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415599.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
     gene            complement(8154..9250)
                     /gene="flgI"
                     /locus_tag="OQQ76_001393"
                     /pseudo
     CDS             complement(8154..9250)
                     /gene="flgI"
                     /locus_tag="OQQ76_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415598.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
     gene            complement(9262..9960)
                     /gene="flgH"
                     /locus_tag="OQQ76_001394"
     CDS             complement(9262..9960)
                     /gene="flgH"
                     /locus_tag="OQQ76_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HCS1967943.1"
                     /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT
                     PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSVNASRDGKT
                     NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN
                     LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVSSTQVVDARIEYVGNGYINEAQN
                     MGWLQRFFLNLSPM"
     gene            complement(10013..10795)
                     /gene="flgG"
                     /locus_tag="OQQ76_001395"
                     /pseudo
     CDS             complement(10013..10795)
                     /gene="flgG"
                     /locus_tag="OQQ76_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819466.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
     gene            complement(10933..11688)
                     /gene="flgF"
                     /locus_tag="OQQ76_001396"
     CDS             complement(10933..11688)
                     /gene="flgF"
                     /locus_tag="OQQ76_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgF"
                     /protein_id="HCS1967944.1"
                     /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV
                     PVEGLSLPTRTLVTASTPGADMTPGKIDYTSRPLDVALQQDGWLAVQTADGSEGYTRN
                     GSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
                     LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMS
                     DMIASARRFEMQMKVISSVDDNAGRANQLLSMS"
     gene            complement(11708..12916)
                     /gene="flgE"
                     /locus_tag="OQQ76_001397"
                     /pseudo
     CDS             complement(11708..12916)
                     /gene="flgE"
                     /locus_tag="OQQ76_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415594.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
     gene            complement(12941..13636)
                     /gene="flgD"
                     /locus_tag="OQQ76_001398"
     CDS             complement(12941..13636)
                     /gene="flgD"
                     /locus_tag="OQQ76_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HCS1967945.1"
                     /translation="MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLK
                     NQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMI
                     PGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
                     SFTWDGTLTDGSTAPNGSYNVAITASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGT
                     YGTTTLDEVRQII"
     gene            complement(13648..14052)
                     /gene="flgC"
                     /locus_tag="OQQ76_001399"
     CDS             complement(13648..14052)
                     /gene="flgC"
                     /locus_tag="OQQ76_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HCS1967946.1"
                     /translation="MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRA
                     KQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEM
                     VNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ"
     gene            complement(14056..14472)
                     /gene="flgB"
                     /locus_tag="OQQ76_001400"
     CDS             complement(14056..14472)
                     /gene="flgB"
                     /locus_tag="OQQ76_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HCS1967947.1"
                     /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDID
                     FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYRIPDQPSLDGNTVDM
                     DRERTQFADNSLQYQMSLSALSGQIKGMMNVLQSGN"
     gene            14628..15287
                     /gene="flgA"
                     /locus_tag="OQQ76_001401"
     CDS             14628..15287
                     /gene="flgA"
                     /locus_tag="OQQ76_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HCS1967948.1"
                     /translation="MLAIKRSVAIIAILFSPLSAASNLTSQLHTFFSAQLVGVSDEVR
                     VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM
                     PIVRGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLRDLSPDQPIQLTHFRQAW
                     RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGLVVSGVVDADGNILIN
                     L"
     gene            15363..15704
                     /gene="flgM"
                     /locus_tag="OQQ76_001402"
     CDS             15363..15704
                     /gene="flgM"
                     /locus_tag="OQQ76_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-28 factor FlgM"
                     /protein_id="HCS1967949.1"
                     /translation="MSIDRTSPLNPVSTVQPRETPDAPVTNTRAAKTTDSTSTSTSTS
                     TSTSTSTSTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDIGKIADAL
                     INEAQQDLQSN"
     gene            15709..16125
                     /gene="flgN"
                     /locus_tag="OQQ76_001403"
     CDS             15709..16125
                     /gene="flgN"
                     /locus_tag="OQQ76_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FlgN"
                     /protein_id="HCS1967950.1"
                     /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE
                     QKSSLLATLDYLEQLRKKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE
                     RNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI"
     gene            complement(16165..17700)
                     /gene="murJ"
                     /locus_tag="OQQ76_001404"
     CDS             complement(16165..17700)
                     /gene="murJ"
                     /locus_tag="OQQ76_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706990.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HCS1967951.1"
                     /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG
                     MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP
                     AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGILQLVYQLPHLKKIGMLVLPR
                     INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS
                     GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV
                     SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI
                     LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV
                     AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR
                     RTV"
     gene            complement(17906..18733)
                     /locus_tag="OQQ76_001405"
     CDS             complement(17906..18733)
                     /locus_tag="OQQ76_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000736138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1967952.1"
                     /translation="MKKLRIGVVGLGGIAQKAWLPVLAAASDWMLQGAWSPTRAKALP
                     ICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRD
                     AERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFT
                     LLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAG
                     SQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIE"
     gene            complement(18735..19382)
                     /locus_tag="OQQ76_001406"
     CDS             complement(18735..19382)
                     /locus_tag="OQQ76_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceH family protein"
                     /protein_id="HCS1967953.1"
                     /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR
                     EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL
                     ITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRE
                     SRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKPRLDSLLAHLGD"
     gene            complement(19393..19977)
                     /gene="rimJ"
                     /locus_tag="OQQ76_001407"
     CDS             complement(19393..19977)
                     /gene="rimJ"
                     /locus_tag="OQQ76_001407"
                     /EC_number="2.3.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1967954.1"
                     /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP
                     WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF
                     HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG
                     FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR"
     gene            20213..21421
                     /gene="mdtH"
                     /locus_tag="OQQ76_001408"
     CDS             20213..21421
                     /gene="mdtH"
                     /locus_tag="OQQ76_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtH"
                     /protein_id="HCS1967955.1"
                     /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA
                     AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL
                     WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ
                     YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA
                     GYYMLAVQVMLMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHR
                     LMAGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSY
                     MGFSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWVMLGIIGIFTFLALGWQFSQKR
                     AARRLLERDA"
     gene            21485..22132
                     /gene="grxB"
                     /locus_tag="OQQ76_001409"
     CDS             21485..22132
                     /gene="grxB"
                     /locus_tag="OQQ76_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 2"
                     /protein_id="HCS1967956.1"
                     /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG
                     QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLL
                     PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK
                     PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI"
     gene            22266..22826
                     /locus_tag="OQQ76_001410"
     CDS             22266..22826
                     /locus_tag="OQQ76_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1967957.1"
                     /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK
                     DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP
                     VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS
                     QGEAMAKKLAKGIEVKPGEIVIPFTD"
     gene            22932..23978
                     /gene="pyrC"
                     /locus_tag="OQQ76_001411"
     CDS             22932..23978
                     /gene="pyrC"
                     /locus_tag="OQQ76_001411"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCS1967958.1"
                     /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMP
                     NLAPPVTTVEAAVAYRQRILDAVPAGHNFTPLMTCYLTDSLDPNELERGFNEGVFTAA
                     KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREAHFIES
                     VMEPLRQRLTALKVVFEHITTKDAADYVHDGNERLAATITPQHLMFNRNHMLVGGVRP
                     HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL
                     GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV
                     PFLAGETVRWSVKQ"
     gene            24052..24297
                     /gene="dinI"
                     /locus_tag="OQQ76_001412"
     CDS             24052..24297
                     /gene="dinI"
                     /locus_tag="OQQ76_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein I"
                     /protein_id="HCS1967959.1"
                     /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY
                     AAANNLSVIGVTKEDKQRIREILQETWESADDWFVSE"
     gene            24587..24841
                     /gene="bssS"
                     /locus_tag="OQQ76_001413"
     CDS             24587..24841
                     /gene="bssS"
                     /locus_tag="OQQ76_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309465.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssS"
                     /protein_id="HCS1967960.1"
                     /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGT
                     EVGQTLWLTTDVARQFISILEAGIAKIESGDFPVNEYRRH"
     gene            24956..26074
                     /gene="solA"
                     /locus_tag="OQQ76_001414"
     CDS             24956..26074
                     /gene="solA"
                     /locus_tag="OQQ76_001414"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HCS1967961.1"
                     /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH
                     GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEDDPIFVRSGVINLGPADSAFLAN
                     VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK
                     EAGCAQLFNCPVTAIRHDDDGVTIETVDGEYQAKKAIVCAGTWVKDLLPELPVQPVRK
                     VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV
                     PFAEVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG
                     LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ"
     gene            26122..26235
                     /locus_tag="OQQ76_001415"
     CDS             26122..26235
                     /locus_tag="OQQ76_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceO family protein"
                     /protein_id="HCS1967962.1"
                     /translation="MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF"
     gene            26495..27061
                     /locus_tag="OQQ76_001416"
     CDS             26495..27061
                     /locus_tag="OQQ76_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HCS1967963.1"
                     /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGW
                     YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAAKAGHLALYLLLF
                     AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG
                     FMALKHHFIDKDDTLKRMLGKSSSDYGV"
     gene            27065..27640
                     /locus_tag="OQQ76_001417"
     CDS             27065..27640
                     /locus_tag="OQQ76_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HCS1967964.1"
                     /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG
                     YSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY
                     PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGSKRAGFEAEGK
                     IKLKDFNIKTDLGPASQEVDLIISVEGVQQK"
     gene            complement(27682..>28269)
                     /locus_tag="OQQ76_001418"
     CDS             complement(27682..>28269)
                     /locus_tag="OQQ76_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HCS1967965.1"
                     /translation="RNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMY
                     CTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGE
                     RISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPP
                     EEQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE"
BASE COUNT         6816 a         7490 c         7149 g         6814 t
ORIGIN      
        1 tgatagagga tattgaaaaa cagcttacca gcgtggcgag gcagaatgaa acctgtaagc
       61 ggttgctgga tattcctggc gttggaccac ttattgcgac ggcagcggtg gccaccatgg
      121 gggaagcatc agcgtttaaa tcggggcgag agttcgccgc atatgttggt ctggttccaa
      181 aacaaactgg ctccggaggg aaagtacgtc tgctggggat aagcaaacgt ggtgacactt
      241 atctcaggac attatttatc cacggtgcaa gagcggtggc attagtagct aaagagcctg
      301 gcccgtggat aaccgaactg aaaaaacgtc gtccagccag tgtggcaatc gtcgccatgg
      361 caaacaagct ggcacgaaca gtatgggcga taaccgccca tgaccgtaag tatgacagga
      421 accacgtcag tatcagacca tattaatcgc tgataccatt aaacaatgaa ctcttaacaa
      481 aagggtgaat gctgaaaggt tgctatggcg gccagagtga tgacaaagac aggtaagacc
      541 gtgactcact aaacctgaac agtattttgg gcttgaagtc cgccgtgaaa ataaggggtg
      601 agtcggcgaa ttacataggg gctcgcagcg ttacggctgc aataaagccg gatataaagc
      661 tgcaacctac ccgtcatgtc aaaacaatgg atgccttgca aacgggatgc gttcatataa
      721 aaactgtgag taagcgggtg ataaatggta aaagtcatct tgctataaca aggcttgcag
      781 tggaataatg aagccgtttc cgtgtccatc cttgttaaaa caagaaattt tacggaataa
      841 cccattttgc ccgaccgatc atccacgcag caatggcgta agacgtattg atctttcagg
      901 cagttagcgg gctgcgggtt gcagtcctta ccggtagatg gaaatatttc tggagagtaa
      961 tacccagtct gtttctttga taattgcgct gtttttccgc atgaaaaacg ggcaaccgac
     1021 actctgcgcc tctttgagct gacgataacc gtgaggttgg cgacgcgact agacacgagg
     1081 ccatcggttc acacccggaa aggcgttact ttgcccgcag cttagtcgtc aatgtaagaa
     1141 taatgagtaa gttacgatga aaagaatgtt aatcaacgca actcagcagg aagagttgcg
     1201 cgttgccctt gtagatgggc agcgtctgta tgacctggat atcgaaagtc cagggcacga
     1261 gcagaaaaag gcaaacatct acaaaggtaa aatcacccgc attgaaccga gtctggaagc
     1321 tgcttttgtt gattacggcg ctgaacgtca cggtttcctc ccactaaaag aaattgcccg
     1381 cgaatatttc cctgctaact acagtgctca tggtcgtccc aacattaaag atgtgttgcg
     1441 tgaaggtcag gaagtcattg ttcagatcga taaagaagag cgcggcaaca aaggcgcggc
     1501 attaaccacc tttatcagtc tggcgggtag ctatctggtt ctgatgccga acaacccgcg
     1561 cgcgggtggc atttctcgcc gtatcgaagg cgacgaccgt accgaattaa aagaagcact
     1621 ggcaagcctt gaactgccgg aaggcatggg gcttatcgtg cgcaccgctg gcgtcggcaa
     1681 atctgctgag gcgctgcaat gggatttaag cttccgtctg aaacactggg aagccatcaa
     1741 aaaagccgct gaaagccgcc cggccccgtt cctgattcat caggagagca acgtaatcgt
     1801 tcgcgctttc cgcgattact tacgccagga catcggcgaa atccttatcg ataacccgaa
     1861 agtgctcgaa ctggcacgtc agcatatcgc tgcattaggt cgcccggatt tcagcagcaa
     1921 aatcaaactg tacaccggcg agatcccgct gttcagccac taccagatcg agtcgcagat
     1981 cgagtccgcc ttccagcgtg aagtccgtct gccgtccggt ggttcgattg ttatcgacag
     2041 taccgaagcg ttaactgcca tcgacatcaa ctccgcacgc gcgacccgcg gcggcgatat
     2101 cgaagaaacc gcatttaaca ccaacctcga agctgccgat gagattgctc gtcagctgcg
     2161 cctgcgtgac ctcggcggcc tgattgttat cgacttcatc gacatgacgc ctgtacgcca
     2221 ccagcgtgcg gtagaaaacc gtctgcgtga agcggtgcgt caggaccgtg cgcgtattca
     2281 aatcagccat atttctcgct ttggcctgct ggaaatgtcc cgtcagcgcc tgagcccatc
     2341 actgggtgaa tccagtcatc acgtttgtcc gcgttgttct ggtactggca ccgtgcgtga
     2401 caacgaatcg ctgtcgctct ctattctgcg tctgatcgaa gaagaagcgc tgaaagagaa
     2461 cacccaggaa gttcacgcca ttgttcctgt accaatcgct tcttacctgc tgaatgaaaa
     2521 acgttctgcg gtaaatgcca ttgaaactcg tcaggacggt gtgcgctgcg tgattgtgcc
     2581 aaacgatcag atggaaaccc cgcactacca cgtgctgcgc gtgcgtaaag gggaagaaac
     2641 cccaacctta agctacatgc tgccgaagct gcatgaagaa gcgatggcgc tgccgtctga
     2701 agaagagttc gctgaacgta agcgtccgga acaacctgcg ctggcaacct ttgccatgcc
     2761 ggatgtgccg ccagcgccaa cgccagctga acctgccgcg cctgttgtag ctccagcacc
     2821 gaaagctgca ccggcaacac cagcagctcc tgcacaacct gggctgttga gccgcttctt
     2881 cggcgcactg aaagcgctgt tcagcggtag tgaagaaacc aaaccgaccg agcaaccagc
     2941 accgaaagca gaagcgaaac cggaacgtca acaggatcgt cgcaagcctc gtcagaacaa
     3001 ccgccgtgac cgtaatgagc gccgcgacac ccgtagtgaa cgtactgaag gcagcgataa
     3061 tcgcgaagaa aaccgtcgta atcgtcgcca ggcacagcag cagactgccg agacgcgtga
     3121 gagccgtcag caagctgagg taacggaaaa agcacgtacc accgacgagc agcaagcgcc
     3181 gcgtcgtgaa cgtagccgcc gccgtaacga tgataaacgt caggcgcaac aagaagcgaa
     3241 ggcgctgaat gttgaagagc aatctgttca ggaaaccgaa caggaagaac gtgtacgtcc
     3301 ggttcagccg cgtcgtaaac agcgtcagct caatcagaaa gtgcgttacg agcaaagcgt
     3361 agccgaagaa gcggtagtcg caccggtggt tgaagaaact gccgctgccg aaccaattgt
     3421 tcaggaagct ccagctccac gcacagaact ggtgaaagtc ccgctgccag tcgtagcgca
     3481 aactgcacca gaacagcaag aagagaacaa tgctgataac cgtgacaacg gtggcatgcc
     3541 gcgtcgttct cgccgctcgc ctcgtcacct gcgcgtgagt ggtcagcgtc gtcgtcgcta
     3601 tcgtgacgag cgttatccaa cccagtcgcc aatgccgttg accgtagcgt gcgcgtctcc
     3661 ggaactggcc tctggcaaag tctggatccg ctatccaatt gtacgtccgc aagatgtaca
     3721 agttgaagag cagcgcgaac aggaagaagt acaagtgcag ccgatggtga ctgaggtccc
     3781 tgtcgccgcc gctgtcgaac cggttgttag cgcgccagtt gttgaagaaa tggctgaagt
     3841 cgtagaagcc cccgtaccgg ttgccgaacc gcaaccggaa gtggttgaaa cgacgcatcc
     3901 tgaagtgatt gccgccgcgg taactgaaca gccgcaggtg attaccgagt ctgatgttgc
     3961 cgtagcccag gaagttgcag aacacgcaga accggtggtt gaaccgcagg aagagacggc
     4021 agatattgaa gaagttgccg aaactgctga ggttgtggtt gcagaacctg aagttgttgc
     4081 tcaacctgcc gcgccagtcg tcgctgaagt cgcagcagaa gttgaaacgg tagccgcggt
     4141 tgaaccagag atcaccgttg agcataacca cgctaccgcg ccaatgacgc gcgctccggc
     4201 accggaatat gttccggagg caccgcatca cagtgactgg cagcgcccta cttttgcctt
     4261 cgaaggtaaa ggtgccgcag gtggtcatac ggcaacgcat catgcctctg ccgctcctgc
     4321 gcgtccgcaa cctgttgagt aataattagc tcaaagtaat caagccctgg taactgccag
     4381 ggctttttta tttcatgttt gaatcaacat attaaaattc atcaaatggc atccttgcta
     4441 accaacaatg caaaataggc aaaaaaaatg cccgccccgg cgatccctga gcgggcagac
     4501 aaaacatacc cagtttcatg atatgtttta aagcgagctt atttgttgag ctggaagagc
     4561 gacaatccct gcatatcggt aaatgcttta tacgatgcct gcaatgccgt ttgctgcatg
     4621 atgtaagatg aaatagttgc attccagtcc acatcaacca gatcgctcat ctgctgcgtt
     4681 tgccctaaag cgcgatcgct acctaaggaa tccagcgact ccagttcgtt cagctgcgtg
     4741 cctaattccg cgcgaacggt aaggacatta ttcagcgagt ttttcagtcc acggttggtt
     4801 ttatccaatg ccgcagcggc gatttcttta tccgcttcgc tatccgcgac cggcgttttc
     4861 agggctgcga tggcgctatc cagcatggca aaaagattgg tttcagaagc gctaccgtct
     4921 ggctccgcaa ctgcgttgct ggtaatactg tcgaaaattt tgtcacccgt gtgccctatc
     4981 accatcgaac gcgaagcatc gacctgttgc ttaatacttt ctgctccacc gacgtatttc
     5041 cctttctctt cgctaaacgg cgcagtctct gttttataac cggcaaaaat gtagcgcccg
     5101 ttaccgtcag tggtgttcgc cagattcagc aactggtcac gaagcccctg aatatccgta
     5161 gccagcgagg cccggtcatc gtcactcaag gtgccattgc tggcgtagac aattttttcc
     5221 tgagcattct ggatagcagt ggtgacctgg ctaagtacac tctcttccag tgacactttt
     5281 tgagtggcga aagtacgcgc cagcgtgtac tggctgtttt gcgcctgtgc ctgggagaga
     5341 actacggctt gtgatgctgc aatgggatcg tcagaagggt taacgactcg cttacctgtc
     5401 gacatctgct cgccgtactt catccattcc gcctgagaat tggtgatgcc acgcatgttt
     5461 tgctggtaca tcatctgggt actgaaacgc atcttatctc cccttagcga atgttaatca
     5521 gcgcatcaaa aatcgcgttt gccgtctgca gaacctgcgc attcgccagg taatactgct
     5581 gaaaacgttg cagatttccg tactcttcgt cgagattgac gccagagata gactgctgct
     5641 gattggaaag ctgcgtcacc acattacctt gcgtggcgct actggttttc aacgtcgcgg
     5701 ttttattacc gatatcactc actaacgagg cataagcgtc gttaaaggat ttcgcaccgc
     5761 ccaccgtttt actgttgctt tgcagatcca gcagggcctg accgttgcgg ttatcgctat
     5821 cacccgcatc tttttcgctc gccatcgcta ttttcgcttc gtcggtgatt aatacatcca
     5881 tgttgacgat ggcgtcactt actggtttca gcgtgaagct gtcgttaacg gcaggcgttc
     5941 ctgtaaacgt caactccaga ccatcaaatg ccactttacc gttggcatcc ggcgtcaccg
     6001 taaaagtggt attgctggca aggcgggtga cctgccactg attattatcg aacgagattt
     6061 tgtaatctgt cgccagtacc gcggaggcat cagttaccgt ggcaccgatc gcaacgtcac
     6121 ctttgttttt cgtgttttgc aaaaccgcgg gcttaccgat agcaaagaaa tcttcaccag
     6181 catcgccgtt ggcatcaaat ccggctttgt gttgggtgtt gaaagcctcg gcaaatgcca
     6241 gcgccagttg tccaagcgta ttacgcgtct ggtccagatc ctgagaacgg aatgtcagaa
     6301 tgccgcccag cgacccggta ttcagtaatt tctccgggat ctcaatattg cctgccgtcc
     6361 catcaacgta agcgacagtc atacgagaag ggtcggcgct ggaaggaact gccgccagtt
     6421 gccgcgccgt acttccctga accagtgagt aaccattggc catcgtgatg ttataagtgc
     6481 cgccatcctg aacgctgact tctacaccaa caatctggtt taattcgctc accagttgat
     6541 cgcgttgatc cagcagattg ttaggtgacg cccctgcccc cacgcctgtc aggcgggaga
     6601 tttggtcgtt caggctggcg atttgtttag cgtaattgtt gatctgatca acgctggcac
     6661 ctatcgcgat attgacctgt ttgtcctggt cgcgaagata ctgatcggtg gttttaaact
     6721 gattcaccaa cccttctgat ttcccaatca gcgcctggcg cgctgccggg tcttccgcgt
     6781 tactcaccag cgtttgcagg ctggtgaaga aatcctgcat ctgtgttgcc agcgaagagg
     6841 tactggtgga gagcatattg tcgattttcg acatctgctc atagcgggca gtcaggccgc
     6901 tactttgcgt ctgcgccgca cgtaactggt tggtgataaa cgcatcatac tcacgctgca
     6961 caccagaaac gtagacacca ttgccaaccc agccgccagc gcccaacgtg ctattggcct
     7021 gcgccataat agtggtttgg cgggtatatc cggcaacgtt atagctggag atattattac
     7081 ttgccgtatt taacgccgcc tgggccgcgt tcagtccgct catggcgtta ttaatcaagc
     7141 tggacatgga ggttccttat aagccttcaa ttacagagta ttatcggcag cgacccgccg
     7201 gacttgagtt attcagaaca gattatcaat gttcatactg taggttttgc tcaccttgtc
     7261 gcttatcgat ttcatctgct gaatcatgtt ggtgagtttg cgggcatagt gaggatcggt
     7321 ggcatagccc gcgtcctgta gggcctgcgc cccctgctcc gcactcgtgg cggtggtcac
     7381 ggcggcgtag cgcgggttac gcgttaacag cccaacgtaa tccgactatg cttccagata
     7441 cgagctgtag acccgaaact tcgcttttac tttcttcgct tcgccgtttt catattcagt
     7501 cgtggtgatt tcagtaactg gccctttcca gttgccagag gctttgacac caaacaggtt
     7561 atagctcggc tcgccgtttt cgcggcggat ttgccgttgc ccccaaccag attccagcgc
     7621 cgcctgagcg aggatcaaat gatgtggcac accgctttgc tggcttgcca gttgggcggg
     7681 cagcgagagt tgcgcgagga atgctttact gtcacccggc agcgaatcat cgtagttacg
     7741 tggcacggcc ttttgcacca gctgcgaaag cgcctgattt tgataacgca ccacagtttc
     7801 gagcgggaat ttcatcggtg ctgctggcgt ggactcctct ggcaatggtt gttctggcgt
     7861 catctgttta accatcatct ctgcaagccc cagacctttg cccgccgtca tctgttgggc
     7921 aatctgctgg tcatacatac tggtatacag gcgagtgtgc tcgctgctga acaggccatc
     7981 ttttggtaaa gcgtcgcgca tgcttttcaa catcatctgc acgaacatcc cttccacctg
     8041 acgggccacc ggacggatat ttgccgccgg atcttcgccc gctttcgcct ttagttcgtt
     8101 gagtgattgc gcatcccagg ccgcacttgc cagtagtttg ctgtcgctga tcatcagatg
     8161 atttccagtt ttgcccgcag acatcccgca ctttgcattg attgcagtat ggacatcaga
     8221 tccatcggcg tagcgcccag cgcattgagc gcgcgcacca cgttattgag cctggcgctg
     8281 gaacgtacgc tttgcagcga accgccgctc tggcgtaaat cgatctgcgt ttgtggagta
     8341 accacagtct gtccaccacc aaacggtgta tctggctggc tgacattggc ctgacgatta
     8401 actgttactg agagattccc ctgcgctacc gcgcagctgt cgagggtcac ttcgcgattc
     8461 atcaccaccg aaccggtgcg cgagttaatc actactttag cgtcctgcgg ggtgacatta
     8521 acctgcatat tctggatatc ggcaaggaag cggacctggg aactgttgcc actcggtacg
     8581 cgcacctgaa tagtccgcgc atctaacgcg gtggcgctgc catatccacg cacgcggttg
     8641 atggtgtcag cgatttgctg cgccatgctg aaatcttcgt cgttaagttg caaattaagg
     8701 gtattcccga cgccaaactg gctgggcaat tcacgttcaa taaccgcacc attggtgatc
     8761 cgtccaccgt tcagttggtt aacctgaaca ctgctaccgc cagcggaggc tcctgcgccg
     8821 ccaaccagaa tattgccctg cgccagcgca tacacctgac tgtcaacgcc cttaagcggt
     8881 gtcatcaaca acgtacctcc acgcaagctt ttggcattac ccatggaaga aaccaccaca
     8941 tcgatggttt gcccctgacg tccaaacgga ggaagtgacg ctgtcaccat taccgcagcg
     9001 acgtttttta gctgcatatt ggtgcccgtc ggaacggtaa ttcccagctg tgagagcatg
     9061 ttattaagcg tttgtgtggt aaacggcgtc tgggttgtct ggtcaccggt gccatccagc
     9121 ccaccaccag accatagcct atcagtgagt tttgccttac cccctgaaca ctggtgagat
     9181 cgcgaatacg ctcagcctga gccgccgtcg tgaccagtag aagaattaat gcagagagaa
     9241 atttaatcac cacagcctca cttacattgg cgacaggtta aggaagaaac gctgcaacca
     9301 gcccatattt tgcgcttcgt taatgtagcc attgcctacg tattcaatgc gcgcatccac
     9361 cacctgagta gacgatacgg tattgctgcc gctgatagtg cgtggattaa ccacgccaga
     9421 gaagcgaata aattcggtac cctgattaat ggcaatctgt ttttcaccca ccacatgcag
     9481 gttgccgttg accagtacct ggtcaaccgt caccgtcaac gtgccgctaa aggtattgct
     9541 ggcattggcc ccgccctttc cgttgaacgt gttaccaccg gaggcttcga catcggcacg
     9601 agcgttacca aacagcccct gcaaatagcg cggcacagta tcaaagccaa aattagtttt
     9661 accgtcacgg ctggcattca cagaggagct tttgctggcg ctgacgttct cctgcaacac
     9721 gatggtcagc gtatcgccaa tattgcgtgg tcgacgatct tcaaacagcg gttgatagcc
     9781 atagttaatc ggctgagcag actggaaaat agaaccgttg gcgacgggcg tcggaccggg
     9841 aaccggttgt gcactggtcg ccccctgcac cagcggcgtg gagggtatcc aggcgcagcc
     9901 ggttagtgaa agcaccaaca agctggaaat ggcataagta tgcgcagcgt ttttttgcat
     9961 ggctatcatc ttcaaaaatc agtaaaccgg tgaacctgcc accggttaag ccttagagtt
    10021 gcgtcagttt ttgcagcatc tgatcggtgg tggacaccgc tttactgttg atttcgtaag
    10081 cgcgttgcac ctgaatcata ttgaccagtt cttccgccac gttgacgtta gacgtttcaa
    10141 catacccttg atacagcaat cccgcgccgt tcaggcccgg cgtgctttcg ttcggtgcac
    10201 cagaggattg cgtttcggtg tagaggtttt cgccaatgct ctccagcccg gtgtcattca
    10261 taaaggtggt gagattgagc tgcccaacct gaaccggagc tgcctggcct tgttaggtta
    10321 cgctgaccac gccatcacga ccgatggtga tacttaacgc attcgccgga atggtgatcg
    10381 ctggctgcac ctgaaaacca ccagccgtca ccagctgccc gttctgatcc acctggaaag
    10441 agccgtcacg ggtataggct gatgaaccat ctggcaacat cacctggaaa aagccctgcc
    10501 ctttaatcgc gacatctttg ctgttgttgg tctgcgacag gtttccctgg ctgtgtaagc
    10561 gttcagtggc gaccgggcgt acccccgtgc cgatttgtaa tccggagggt aaggtggttt
    10621 gttcggaaga ctgtgccccc ggctggcgaa tggtttgata aagcagatct tcaaacaccg
    10681 cgcgctgacg cttaaaaccg ttagtactga cgtttgccag gttgttggca atgacgtcca
    10741 tattggtttg ctgggcgtca aggcccgttt tggcgatcca taatgaactg atcataaaat
    10801 gtcctgtagt ggattagtga caagcagagc agaagcacgc gacagtgtga atttcccctc
    10861 accctaaccc tctccccaaa ggggcgaggg aatagtccgc gcgcttttat tgcaatgtca
    10921 tcaatcgttc aattaactca tcgacagcag ttggttggca cggcctgcgt tatcatcgac
    10981 gctgctgatc accttcatct gcatttcaaa acgccgcgcg ctggcaatca tgtcgctcat
    11041 tgccgcaacg gcattgacgt tactgccttc cagaaccccc gacatcacac gcaaggttgg
    11101 atctgcctgc agtaccggcc ctcgcgtggc ctgggtttct gcgcttaaac gaaaaatgcc
    11161 gtcgtcaccg cgctgcactt cgctgcccgt ggctttcacc agtttcagac gccctactgg
    11221 cgcaactgta tttgccggat cgcccggatt gagcgccgag attgtgccat cggcagcaat
    11281 agtgatttcc gctccttccg gcacagcaat tggccccgcc tcgcctatca cctgatgccc
    11341 ctgaattgtc agttgcccgg tgggatcaac ctgaatgctg ccattacgcg tatacccttc
    11401 gctgccgtca gcggtctgca cggccagcca gccatcctgc tgcaacgcaa cgtccagcgg
    11461 gcgcgaggtg taatctatct tgccgggcgt catgtctgca cccggtgttg acgccgttac
    11521 cagcgtgcgc gtgggcagtg aaagcccttc caccggcact gcgcgcaagg cgtttaactg
    11581 cgcgcgaaaa ccgggcgtag aggcattggc cagattactg gcggttaccg cctgttgatt
    11641 cagcgtctgg ctggctgctc ccatcgcagt ataaattgcg tgatccattg agctatcccg
    11701 tcagcgatta gcgtaagtta accagcgtgt tgaggatctg gtcctgggtt ttgatggtct
    11761 gggcgttaga ctgatagtta cgctgggcaa cgatcatatt gaccagttct ttactgagat
    11821 cgacgttgga cgcttccagc gcaccgttgg tcagggtgcc aaagtttccc gtcccggctg
    11881 tccccaacag cgccacgcca gaagattgcg tcgcagacca gacgttgtcg ccttcggatg
    11941 ccagaccttc gttgttggca aagttcgcca gtacaatctg ccccagcagt tgagtttgtt
    12001 cgttggaata gttgccgaca accgtaccgt catcattgat ttgataactc accagatcac
    12061 ccggtttgta gccgttctgg ggggttgcca caatattgtt agcgccggta ttttgctgca
    12121 tggagttgag gaagctcaga ctaaacgtgg cgggttctgc accgttaatt gcgccggttg
    12181 cgatattatt cgccatcgca ccatccacta atgtgccatt agcattaaat tccagtgttg
    12241 tcgctgtctt cgcaatgctg tttggatcac tgctatccta ggtgtagacc tgccagttat
    12301 tatccccggt cttcacaaag tagacgctca tgtcatgagc attaccctga ctgtcgaaaa
    12361 cagtcaccga accttttttg ttatagctat ccgcattgct ggcgctgaat ggcgtaacag
    12421 taggaagcgg atcactggaa ttcaggttga tctgcatcga cgccgtggtg gtagttttcg
    12481 ctgccatcag ggtattcggg atcgaaatat tggtcggatt cgccccttgc tgaatagtcg
    12541 gcggcgtacc ggttgccggg taacccgtca gctgtaaacc ttgcatattc accaggttac
    12601 ggttttcatc cagcttaaat tgtccgttac ggctgtagaa caccgaaccg ttgctgtcta
    12661 ccagacggaa aaaaccgttc tggctgatag caacgtccag acctcgcccg gtgttggtgg
    12721 tcgtgccatc tgtaaagtcc tgagtgatac cggcaacttt tacccccagt cccactttcg
    12781 aaccggcaaa catatcggca aaagaggccg tgcctgattt aaagccgtag gtggcggagt
    12841 tgacgatatt gttgccaata acatcgaggt tagtggcggc agcgtttaat ccgctaaccg
    12901 cttgagaaaa ggccatgact gactcctgaa atgtgaaggc ttaaattatc tgccgtactt
    12961 cgtcgagggt ggtggtgccg taagtgccga gatccagcgt attaccgctg ttgccgcgga
    13021 tcacaccctg caccagagca aactgcagcg gctgggcaac cagttgtgta ccaccgttac
    13081 tggcggtaat cgctacattg taagaaccgt tcggcgcagt gctgccatca gtcaacgtac
    13141 cgtcccaggt gaaactgtga actccggcgg tcagttcacc aatatcaatg gtgcgcacaa
    13201 ccgcgccatt tttatcggtg atggtggccg taactttgtc tgccgcctgt tgcagctcaa
    13261 caccaaacgg cgtggtcgtg gtcacagccc cttcttcact gccggttccc gcaagaacag
    13321 ttgtgccggg gatcatcacg ccgtgaccga tcaggttact ggcctgtaac gactggctgt
    13381 tatcaatctg tccggaaata gatccgagcg tggtattgag tttttcaatc ccgctgaccg
    13441 tgctgatttg tgccaattgc gacgtcagct cgttgttttc cattggattg gtcgggtcct
    13501 ggtttttcag ctgcgccacc agcaaagtca gaaaactgct ttgtaaatct gcggcgttgc
    13561 tgcccgtgag cgaactactg ctggtggtac tgacgccggt atttgtcgga tcggtggtgg
    13621 ttaccgcaat ggacatagct ttctccttta ttgaccgagc gtaagggttt tcagcatcat
    13681 gcttttcacc gtgttgagca cttcaacatt ggcctgatag ctgcgtgacg ccgacatggt
    13741 gttaaccatc tctccgacaa catcaacgtt cggcattttt acgtagccct ttgcatccgc
    13801 cagcggatta cccggttcat aaaccagttt gtccggggcc tgactttcta taacatcggc
    13861 aacctttacg ccgcctgtcg cagcacctgg tgcagcgtta acctggaata ccacctgttt
    13921 tgcccgatat ggctgtccat cgggaccggt cacgctatca gcattcgcca gattactggc
    13981 cgccacgttc aggcgctggg actgggcagt taacgccgac ccggcgatat caaaaatatt
    14041 cagcagtgcc atccgttaat ttccgctctg taaaacgttc atcatgcctt tgatttgccc
    14101 gctcaacgca ctaaggctca tctggtattg caggctgtta tcggcaaact gggtgcgttc
    14161 gcgatccata tcgacggtat taccgtcaag cgaaggctgg tccggaatgc ggtattgcag
    14221 ttctgcggta ggaggcgtca gcgcctgcgc cggaatgtgt tgcgttgagg tcatcgtcag
    14281 agcaaccaca ctggttgcat cccgtccacg ttgcatgact tttttaagtt cactggcaaa
    14341 atcgatatcg cgcgcctgat aaccaggggt atcggcattg gcgatgtttg ctgccagcac
    14401 ttcctgacgc tgggcgcgca gattgagcgc ctcttgttga aaacgtaagg cggcgtcgag
    14461 cttatcgagc atatctcctc cgcaggtatc aaaattctgc catcagctta aatgccttta
    14521 cgcgcgcgtt atcggcggaa taaacgcaaa atgggtcgct atttatgccg ttgatgacca
    14581 ttggggacgg gtacaattca cgttgtagaa atagctgggg ggcgaaaatg ctggcaataa
    14641 aacgtagcgt ggcgatcatc gcgatactgt tcagtccgtt aagtgcggcg agcaatctca
    14701 catcgcaatt gcacaccttt tttagcgccc agctcgtggg ggtaagtgat gaggttcgtg
    14761 tttctattcg tacagccccc aatctactac cgccgtgcga gcagccattg ctttcgatga
    14821 gcaataattc ccgcctgtgg ggcaatgtga atgtgttggc acgctgcggt aacgacaaac
    14881 gatatttaca ggttaatgtg caggccacag gaaattatgt ggttgccgcg atgcccattg
    14941 tgcggggagg aaagctggaa gctggcaatg tcaaactaaa acgcggacga ctggataccc
    15001 tgccaccgcg tacggtgctg gatatcaatc aacttgttga tgccattagc ctacgcgatc
    15061 tatcacccga tcaaccaatc caattaaccc attttcgcca ggcatggcgg gtaaaagcgg
    15121 gacaacgcgt caacgtgatc gccagcggtg acgggtttag cgccaacgca gaaggtcagg
    15181 cgctgaacaa tgcagccgtc gcacagaatg cgcgggtgcg catggtatcg ggactggtgg
    15241 tcagcggcgt tgttgatgca gatgggaata ttcttataaa cctgtaagct gttaaagatt
    15301 acccgtccct tgccgataaa taagcaacac atgataaaag cgccctcaat gaggaataaa
    15361 ccatgagtat tgatcgcact tcgcctctga atcccgtaag caccgttcaa ccgcgcgaaa
    15421 cccctgacgc gccggtaacg aacacccggg cggcaaaaac aaccgactcc accagcacca
    15481 gcaccagcac cagcaccagc accagcacca gcaccagcac cagcaccagt gtgacgttaa
    15541 gcgacgcgca agcaaaactg atgcaacccg gcagcagtga tatcaatctt gaacgtgtcg
    15601 aagcgttaaa actggcgatt cgtaacggtg aactaaaaat ggacatcggc aaaattgccg
    15661 atgcgctgat caacgaagct cagcaagact tgcagagtaa ctgatcgtat gacacgtctt
    15721 gcagagatcc ttgaccagat gtccgctgtg cttaacgatc tcaaaacggt aatggatcaa
    15781 gagcagcaac atctctctat ggggcagatc aacggcagcc agttgcaatg gattacagaa
    15841 caaaaaagct cactgctggc gacgctggat tacctcgaac agttacgcaa gaaagaaccc
    15901 aatacagcaa atagcgttga tattagtcaa cgctggcagg aaattactgt gaaaacgcag
    15961 caactacgcc aaatgaatca acataacggt tggttactgg aaggacagat tgagcgcaat
    16021 caacaggcgc tggaaatgtt gaaaccgcat caggaaccga cgctatatgg ggcgaacggt
    16081 cagacctcaa caacccatcg cggcggtaaa aagatttcga tctgaagatt atctccggcc
    16141 tgcactgcag gccggaatgc attgttacac cgtccggcgg gcaaattctt taactttgaa
    16201 gcccagtacc gccagtgcag cgaagtacgc ggcaatcccc gccagcacga ccgccattaa
    16261 acgcagtaag cgccagggca tggtacccaa tgaccactcc ggcatgatat gtaacatacc
    16321 taaaagcacg ccagacatca ccagtaccgc caccaccaga cgcaacagaa acgccatcca
    16381 gccgggttgc ggagtaaaga ttttctgctt acgcaactgc cagtaaagca gcgaagcatt
    16441 cagacacgcc gccagaccaa tagaaagtga cagcccggca tgtttcaacg gaccaataaa
    16501 cgccaggttc atcaattgcg ttaaaatcag cgtaacgatg gcaattttca ctggcgtttt
    16561 aatgtcctgg cgggaataaa agccaggagc caacactttc actacaatca ggccaatcaa
    16621 acccaccgag taggcaatta acgcccgctg ggtcatcagc gcatcaaacg cggtaaattt
    16681 accgtactgg aacagcgaaa cggttaacgg acctgaaaga atgcccaacg caaccgcact
    16741 cggcagcgcc aacaggaaac aaagacgcaa cccccagtcc atcaaacggt tgtattcatc
    16801 atgattgcca ctggcaaaac ttttcgacag cgacggcagc aaaatggtgc caagcgccac
    16861 gcccagcaca ccggacggaa actccattaa gcggtcggcg taatacatcc aagacaccga
    16921 accggaagca agaaacgagg caaaaatggt gttgatgatt aaggagatct ggctcacaga
    16981 gacgccaagg atcgccggtc ccatctgttt caccacgcgc attgctccgg catcgtggaa
    17041 gttaatgcgc ggcaggacca gcatgccgat cttcttcagg tgcggtagct gatacaccag
    17101 ctgcaggatg ccgccgaccg taacagccca cgccagcgcc agcaccggtg ggttaaagta
    17161 cggtgcggca aacagcgcga aaccaatcat gctgatgtta agcagtgttg gcgcaaacgc
    17221 cggaatcgag aagcggttcc acgtattcag aatcgctccc accagcgacg ccagggagat
    17281 cagcaagata tagggaaagg taatctttag tagctggctg gtcagggcaa atttgtcagc
    17341 tgtgtcagcg aagcctggcg cggtcaccat gatcacccac ggtgcggcga gcatgccagc
    17401 gaccgtcaca accgccagcg caagtgtcag caggccagaa acataagaga caaagacccg
    17461 cgtggcgtct tcaccctgct tacttttata ttccgccaga atcggtacaa atgcctggga
    17521 aaatgcccct tcggcaaaga tacggcgtaa caagttagga agtttaaaag cgacgaaaaa
    17581 ggcgtcggtt gccatccctg cgccaaagat tctggcgaca attgcgtctc gtgcgaagcc
    17641 aagcacacgc gaaaacatgg tcatcgagct gacggcggcc agcgatttta ataaattcat
    17701 cggtgttcta atccagacca acgggcaaaa cgcctgcaag acaggcgctg aaagaggcga
    17761 atagtctacc tggattatgg tgaattgcta ccgccagatg ttacagggtt tattcactca
    17821 tcgcatcgcg ccagatcttg tcaacgatac gttgcgccag cacggcctat tcgccggcgg
    17881 tttgcggaac tgtctgattt tgcactcatt caatgaagtg ccgcgcacag ccgacaaatc
    17941 cacgttgttc aagagtgctc tgccaaccag gaatcggttt atgcactacg ccctgcccgc
    18001 gctcctcacg ccattcgcgc atatccgtaa tgtcgatgag cgcaccgtca gtcacggcct
    18061 gcacggtttc acgctgactt ccggcacggc gatgcataca ggtggtgatc tgcaaaggac
    18121 cggccgaaaa atggtgctcg gcaaacagca tttcgccagc gtcgttagtc agtagcgtac
    18181 cgccatccag agaggctttg ccgcccgaca accacagcgc ggtatccacc acatgcagat
    18241 aatcatccag caacgtgaaa taaagatcgt gtggcccgac actattgcta cgatgtttat
    18301 ccattcttag cgaagctgcg gtagcgagtt gcgtttttaa ctcaccgtag agtggtgcga
    18361 aacgacggtt aaaaccgacc atcaacgtca gttttttccg cgccgccagt tccaccagcc
    18421 gttcagcatc gcgcagattt tctgccagcg gtttatcgac acagacatgt acacccgcat
    18481 tgagtaacgt actgaccacg tcaaagtggc tggcggtgct ggaatgcaca aaaaccgcat
    18541 cgcaactggc ggcaaggctg gataacgaat cggcataagg aatgcgccag ctttcacaaa
    18601 ttggcagggc tttcgcgcgc gtaggcgacc aggctccttg taacatccag tcagacgctg
    18661 ccgccagcac cggtaaccac gctttttgcg caatgccgcc taatcccaca acgccgatac
    18721 gtaatttttt cactttaatc tcccagatgg gccagcaacg aatcaagacg cggtttcagt
    18781 tctgccactt cgatttccag ggcttcgacg cgggcctgta aatcaccatc aaccgcgttc
    18841 gacatatccg ttaccgccgg ctgatcctct acctcaccac tgaaaagatg catgtagcgg
    18901 ctttcgcgtt tacccggttc gcgggccaga cgcaccacaa aaggaccatc ttcgcgattt
    18961 gccagttgtt ccagcgtcga ctccacttcc gccatatcgc tgaattcata cattcgcgcg
    19021 gcgcggctgc gcagttcacc cggcgtctgg gcaccacgca ataacaacgt ggtgattaac
    19081 gccacttccg ctgcgctcag tttcagatcg ccaaattctg aattacaaaa acgttgttca
    19141 tatttggtga cccgattacc aaagccactc accgtgcgca gataatggcg tttgaccaga
    19201 ttatccagtt gctcctgcac ttcagattca ctcagattca tgaccggttc acggttcgtt
    19261 ttctgattac aggccgtgac tacaccattg actgagagcg ggtattgctc cggcgtggtc
    19321 acctgctttt ccagcaagca accaatcacg cgagcttcaa gggcagtaag ttgatatttc
    19381 atgagattct ccttagcggc cgggcgtcca gtctggggta gttaatgccg tcagtacgtg
    19441 atcgcgccat tgtccatcaa tcaacagata gtctttcgca tagccttctt tttcaaaacc
    19501 cagtcgcgcc agtaaatcac cgctgcgttt attgtgcggc atataattag ccataatgcg
    19561 atgaatatgt tgggtgcgct gcatataacg aatggctgcg gtcagggctt caaacatgag
    19621 tcctttgccc tgccattttt gcccaatcga ataaccgaga tagcaggcat gaaaagagcc
    19681 acgaacaaca ttggaaaaat tggcaacgcc aataatctct ttttcgtccg ggtcgaataa
    19741 gccaaagtag aaagctgaac cttgtttatg aaattcgtta atcatcccca gcctggcctg
    19801 ccagcctgat ggataacagt ggctttcgtc gcgcactggc tcccagggct tgaggaaatg
    19861 gcgattctct gcgtaataat ccgcaagacg ccaggcatca cgatcatgca ccagacgcac
    19921 gaccagtcgg tctgtggtta agcgcacttt tggcacgtta ctgcgatagc caaacattct
    19981 atacctactc cttcccgtaa cgtctttaat acgctgtaag tattactata cctgcgcaac
    20041 cagaccctgt gaaaagtcca aaatgccatt ttctgcatta ttcacatatt tgataaaaac
    20101 tctctatcaa agcgacgttt tgataaaaaa atattgtccc cgaagtgatg ggaaaagtct
    20161 tagcggcaat gcagaataga aagtgctcat gttttatttc ccgggagggg aaatgtcccg
    20221 cgtatcgcag gcgaggaacc tgggtaaata tttcctgctc atcgataata tgctggtcgt
    20281 gctggggttc tttgttgtct tcccgctgat ctctatccgc ttcgttgatc aaatgggctg
    20341 ggccgccgtc atggtcggta ttgctctcgg tctacgccag tttattcagc aaggtctggg
    20401 tattttcggc ggcgcaattg ccgaccgctt tggtgccaaa ccgatgattg ttaccggtat
    20461 gctgatgcgc gccgccggat tcgcaacaat gggtatcgcc cacgaaccgt ggctattgtg
    20521 gttttcatgc ctgctctcgg gactcggcgg cacgttgttt gatccgccgc gttcggcgct
    20581 ggtggtgaaa ctaatccgtc cacaacaacg tggtcgtttt ttctcgctgt tgatgatgca
    20641 ggacagtgcc ggtgcggtca ttggcgcatt gttggggagc tggctgttgc aatacgactt
    20701 tcgcctggtc tgcgccacag gggccgtttt gtttgtgctg tgtgcggcgt tcaatgcgtg
    20761 gttgttaccg gcatggaaac tctccaccgt acgcacgccc gttcgcgaag gcatgacccg
    20821 cgtgatgcgt gacaagcgtt ttgtcaccta tgtcctgacg ctggcgggtt actacatgct
    20881 ggctgtacaa gtgatgctga tgctgccaat tatggtcaac gacgtggctg gcgcgccctc
    20941 tgccgttaaa tggatgtatg ccattgaagc gtgtctgtcg ttaacgttgc tctaccctat
    21001 cgcccgctgg agtgaaaagc attttcgtct ggaacaccgg ttgatggctg ggctgttgat
    21061 aatgtcatta agcatgatgc cggtgggcat ggtcagcggc ctgcaacaac ttttcaccct
    21121 gatttgtctg ttttatatcg ggtcgatcat tgccgagcct gcgcgtgaaa ccttaagtgc
    21181 ttcgctggcg gacgcaagag ctcgcggcag ctatatgggg tttagccgtc tgggtctggc
    21241 gattggcggc gctattggtt atatcggtgg tggctggctg tttgacctgg gcaaatcggc
    21301 gcaccagcca gagcttccgt gggtgatgct gggaattatt ggcatcttca ctttccttgc
    21361 gctgggttgg cagtttagtc agaaacgcgc cgcgcgtcgt ttgctggaac gcgacgcctg
    21421 atttgatact cccccctgac tcctccatac tgaaagtgaa ctgacagcca aatggaggag
    21481 tcacgtgaag ctatacattt acgatcactg cccttactgc ctcaaagccc gcatgatttt
    21541 cggcctgaaa aatatccccg tcgaattaca tgttctgctc aacgacgacg cagaaacacc
    21601 cacccggatg gtcggtcaaa aacaggttcc cattctgcaa aaagatgaca gccgctatat
    21661 gccagaaagc atggatatcg ttcactatgt cgataaactc gacggcaaac cgttactgac
    21721 cggcaaacgt tcccctgcca ttgaagagtg gctgcgcaag gtcaatggct acgccaacaa
    21781 actgctgttg ccgcgttttg ccaaatcggc atttgatgag ttttctactc ccgccgcgcg
    21841 caaatatttc gtcgacaaga aagaggccag cgcgggtaat tttgccgacc tgctggccca
    21901 ctctgacggt ctgattaaga atatcagcga tgatttgcgt gcgctggaca aactgatcgt
    21961 caaaccgaac gccgtgaatg gcgaactttc ggaagatgat attcagctat ttccgctact
    22021 gcgtaatctg acgttggtag ccggaatcaa ctggccaagc cgcgttgctg attaccgcga
    22081 taatatggcg aaacagacac aaatcaattt gttatcatca atggcgattt aatcctgacc
    22141 cgccgcggca gcctgtattc gcgggttgcc gccgttttca gttttttctg ctggcgagtt
    22201 tatcgctggt gacacatgct gcgttgtgtc aggatattga cgcagatttc atgtcgagga
    22261 ctaccatgaa caagttttta tttgccgctg cattgatcgt cagtggcctg ctcgttggct
    22321 gtaatcaact cacccaatac accatcaccg aacaagaaat taaccagtcg cttgcgaaac
    22381 ataataattt ctcaaaagat atcggtttac ccggcgtggc tgacgcccat attgttctga
    22441 caaacttgac cagccaaatt ggtcgcgaag agccgaataa ggttacccta accggagacg
    22501 ccaatctgga catgaactcc ctgttcggta gtcagaaagc gaccatgaaa ctgaagctga
    22561 aagcgctgcc cgtgtttgat aaagaaaaag gtgcgatctt cctgaaagag atggaagtgg
    22621 tcgatgcgac ggtacaaccg gaaaaaatgc aaacggtgat gcaaacgttg cttccctatt
    22681 tgaaccaggc attacgcaat tactttaacc agcaacctgc ttacgtcctg cgcgaagatg
    22741 gcagtcaggg cgaagcaatg gcgaaaaaac tggcgaaagg cattgaagtg aagccaggcg
    22801 aaattgtcat tccgtttacg gattaatgac gagggcgcat tcgcgccctt tatttttcgt
    22861 gcaaaggaaa acgtttccgc ttatcctttg tgtccggcaa aaacatccct tcagccggag
    22921 catagagatt aatgactgca ccatcccagg tattaaagat ccgccgccca gacgactggc
    22981 accttcacct ccgcgatggc gacatgttaa aaactgtcgt gccgtatacc agcgaaattt
    23041 atggacgggc tattgtaatg cccaatctgg ctccgcccgt gaccactgtt gaggctgccg
    23101 tggcgtatcg ccagcgtatt cttgatgccg tacctgccgg gcacaatttc accccattga
    23161 tgacctgtta tttaacagat tcgctggatc ctaatgagct ggagcgcgga tttaacgaag
    23221 gcgtgttcac cgctgcaaaa ctttatccag caaacgcaac cactaactcc agccacggcg
    23281 tgacgtcaat tgacgcaatc atgccggtac ttgagcgcat ggaaaaaatc ggtatgccgc
    23341 tactggtgca tggtgaagtg acacatgcag atatcgacat ttttgatcgt gaagcgcact
    23401 ttatagaaag cgtgatggaa cctctgcgcc agcgcctgac tgcgctgaaa gtcgtttttg
    23461 agcacatcac caccaaagat gctgccgact atgtccatga cggaaatgaa cggctggctg
    23521 ccaccatcac tccgcagcat ctgatgttta accgcaacca tatgctggtt ggtggcgtgc
    23581 gtccgcacct gtattgttta cccatcctca aacgcaatat tcaccaacag gcattgcgtg
    23641 aactggtcgc cagcggtttt aatcgagtat tcctcggtac ggattctgcg ccacatgcac
    23701 gtcatcgcaa agagagcagt tgtggctgcg cgggctgctt caacgcccca accgcgctgg
    23761 gcagttacgc taccgtcttt gaagagatga atgctctgca gcactttgaa gcattctgtt
    23821 ctgtaaacgg cccgcagttc tatggcttgc cggtcaacga cacattcatc gaactggtac
    23881 gtgaagagca acaggttgct gaaagcatcg cactgactga tgacaccctg gtgccattcc
    23941 tcgccgggga aacggtacgc tggtccgtta aacaataaaa atcgtagctt cctgttgtca
    24001 ttaggttatt ttaactgtat aaataaccag tatattcaac agggggctat tatgcgaatt
    24061 gaagtcacca tagcgaaaac ttctccattg ccagctgggg ctattgacgc cctggctggc
    24121 gaactttccc gccgtattca gtatgcgttt cctgataatg aaggccacgt atcggtacgt
    24181 tatgccgcag cgaataattt atcggttatt ggcgtaacaa aagaagataa acagcgcatt
    24241 agagaaattc tccaggaaac gtgggaaagc gccgatgact ggtttgtcag cgaataatat
    24301 gcagtgattt ttgtttttgc cgggtcgccc cggctttttt attttactta caaattttga
    24361 gtacaaaatt tctacacttc ctcaaaataa ttgcacaata tgctaaaaaa atatgaatga
    24421 catgctgttt tattgttcat ataaatctta aaagcagaaa tttatctgtt ccccccttta
    24481 aaaattcggt gaataccctt acttattggt atactgaagt tgcttcagat aaaaacgcat
    24541 tgaacctcga ataacgttgt ctagtaacac gaattagggg gccatgatgg aaaaaaataa
    24601 tgaagtcatt cagactcatc cgctcgtagg gtgggacatc agcaccgttg atagctatga
    24661 tgcgctgatg ttgcgtttgc actaccagac cccaaataag tccgagcagg aagggactga
    24721 agttggtcag acgctctggt taaccactga tgttgccaga caatttattt cgatattaga
    24781 agcaggaatc gccaaaattg aatccggtga tttcccggta aacgagtatc ggcgtcatta
    24841 acatgacatg accatccacc caaaaggcac ctcaccggtg cctttaccat ttctgggttg
    24901 tatatctgca ttcagttaat tactctgctt aaaccatgag agcagagaga aaaaaatgaa
    24961 atacgatctc atcattattg gcagcggttc cgtaggcgct gccgccgggt attatgcaac
    25021 ccgcgccggt ttaaacgtgc taatgaccga cgcccatatg ccaccgcatc aacacggcag
    25081 ccaccacggc gatacgcgat taattcgcca tgcttatggt gaaggcgaaa agtatgtccc
    25141 gttggtcctc cgcgcgcaaa cgctgtggga tgaactttcc cgccacaacg aagatgatcc
    25201 catttttgta cgctctggtg tcattaacct cggcccggct gactccgcat ttctcgccaa
    25261 cgtcgcccac agcgccgaac agtggcaact caacgttgaa aagctcgatg cgcaagggat
    25321 tatggcccgc tggccagaaa tacgcgtccc ggacaactac atcggcttat ttgagactga
    25381 ttccggtttt ttgcgcagcg aactggcgat taaaacctgg atccaactgg cgaaggaagc
    25441 gggctgtgcg caactgttca actgcccggt caccgcaatt cgtcatgacg atgatggcgt
    25501 aactattgaa accgttgacg gtgagtatca ggcgaaaaaa gcgattgtct gcgcgggaac
    25561 atgggtaaaa gacctgctcc cggagctgcc tgtccagcct gtacgtaaag tatttgcctg
    25621 gtatcaggcc gatggccgct atagcgtgaa gaataaattc ccggcgttta ccggtgaact
    25681 gcccaatggc gatcaatatt atggttttcc ggcagaaaac gacgcgttga agattggcaa
    25741 acataacgga ggccaggtta tccattcagc ggatgaacgt gttccgtttg cggaagtggt
    25801 cagcgatggt tcggaagcct tcccgttctt gcgcaatgta ttgccgggta tcggttgctg
    25861 cctgtacggc gctgcctgca cctatgataa ttcgcctgac gaagatttta ttatcgatac
    25921 cctacccggc cacgataata cactgctcat taccggcctg agtgggcacg gttttaaatt
    25981 tgcgtcagtt ttaggggaaa tagctgccga ttttgcgcaa gacaaaaaaa gcgattttga
    26041 tttgacgcca ttcaggcttt cccgcttcca ataatcatca ttacggcctc cagaatgagg
    26101 ccgtttttac aggagtattt aatgcgtcgg ctgttgcact atctcatcaa taatattcgc
    26161 gagcatctga tgctttatct ttttctctgg ggattgttgg caattatgga tctgatctat
    26221 gtgttttatt tttagttttc cgcactgaca taaactgaca aatatttaat ctccctttca
    26281 tttagcgtga aaattgaatg agattattcc tgcttctaca gcactcacca gacatctctg
    26341 atgctgaacc cactaaactt atgaagattc tttcattatt aattcaaaat tattgaaata
    26401 aaaataaata tcattcaatt tgttattttt gtgttgcaat tcattctccg acacgccatt
    26461 ttctttctct cgcaaattcg tattggatgc acttatgtca ttcacaaata cccctgaacg
    26521 ctatggtgtt atatctgcgg ccttccattg gctaagcgca attattgtct acggcatgtt
    26581 tgctttaggt ctgtggatgg tcacgctcag ttattacgat ggctggtatc acaaagcacc
    26641 cgaactgcat aaaagcatcg gtattttgtt aatgatgggg ctggttattc gcgttctgtg
    26701 gcgtgtcata tctccaccgc cgggtccgct gccgagttat tcgcccatga ctcgtcttgc
    26761 cgcaaaggct ggacatctcg cattgtacct attgctgttc gccatcggca tcagcggcta
    26821 tctgatctca actgccgatg gtaaaccgat cagcgttttt ggctggtttg acgtccccgc
    26881 gacccttgcc gacgctggcg cacaggcaga ctttgccggt gccctgcatt tttggctcgc
    26941 gtggagcgtc gtagtactgt ccgttatgca cggatttatg gccctgaagc atcatttcat
    27001 cgataaagac gacactctga agcgcatgct gggaaagtcg tcatctgact atggagtata
    27061 aaaaatgaaa aaaagcctgc ttggtttaac cttcgcgtcc ctgatgttct ctgccggttc
    27121 agcggttgcc gccgattaca aaattgacaa agaaggtcag cacgcctttg ttaatttccg
    27181 catccagcac cttggctata gctggttata cggcaccttt aaagatttcg acggtacttt
    27241 tacctttgac gaaaaaaatc cggctgccga taaagtgaat gtgacaatta acaccaccag
    27301 cgtcgatact aatcacgccg aacgcgataa acatcttcgc agtgcagatt tcctcaatac
    27361 cgcaaaatat ccacaggcaa cattcacctc caccagcgtg aagaaagacg gtgacgaact
    27421 ggatattacc ggcgatctga cgctgaatgg cgtaaccaaa cccgtcacgc tggaagcgaa
    27481 attaattggt cagggcgacg acccatgggg tagtaaacgt gcaggcttcg aggccgaagg
    27541 caaaattaag ctcaaggact tcaatatcaa gacagattta ggtccagctt ctcaggaagt
    27601 ggatctgatt atttcagtgg aaggcgtaca gcagaagtaa gcgtgaaatg ttgccggatg
    27661 gcacgcatcc ggcaatgata tttattctgt tggatcagga atgcccagtg ttgtattcag
    27721 acgtccacga gacttattaa agatcttatt gccattttca cgtcctgccc gacggcgtcg
    27781 ctgttcttct ggcggtaacg cgctttcttc gcagcaaatc tcactacaac aacctttgta
    27841 tttttccgcg catactggac actgaataaa cagcaggtgg cagccatcat ttttacagtt
    27901 ggtatggctg tcgcacggcg cgccgcactg gtggcaatgc gcgataatct catccgatat
    27961 acgttcgccc atccgctcgt caaaaacaaa atttttgcca ataaaacgca ccggcaagcc
    28021 ctgctcgcgc gccttacggg cgtattcaat aattccgccc tcgatatgcc agactttgtt
    28081 gaatccgtta tgtttcatcc aagcactggc cttttcacaa cgaatgccgc cggtgcagta
    28141 catgacgatt tttttatctt tatgtgcctg catcatctcg actgcttttg gcagctgctc
    28201 acggaaggta tctgccggaa tttcgagcgc gttttcaaag tgccccactt catactcata
    28261 gtggttacg
//
LOCUS       DAJVUN010000041        27879 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.041, whole genome shotgun sequence.
ACCESSION   DAJVUN010000041 DAJVUN010000000
VERSION     DAJVUN010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27879
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.041"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1118
                     /locus_tag="OQQ76_001419"
     CDS             <1..1118
                     /locus_tag="OQQ76_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HCS1967966.1"
                     /translation="RANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS
                     SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC
                     WHRHRKLWPDRTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGVRVMV
                     DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN
                     PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVNTQLDPEKLTTAQLIAAWQSGE
                     PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR
                     DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI"
     gene            complement(1182..2435)
                     /gene="glyA"
                     /locus_tag="OQQ76_001420"
     CDS             complement(1182..2435)
                     /gene="glyA"
                     /locus_tag="OQQ76_001420"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HCS1967967.1"
                     /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN
                     FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK
                     QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP
                     HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL
                     KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD
                     AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS
                     INDEAVIERIKGKVLDICARYPVYA"
     gene            2763..3953
                     /gene="hmpA"
                     /locus_tag="OQQ76_001421"
     CDS             2763..3953
                     /gene="hmpA"
                     /locus_tag="OQQ76_001421"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HCS1967968.1"
                     /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN
                     MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL
                     LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK
                     TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR
                     IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISSGVGQTPMLA
                     MLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK
                     GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGP
                     HKVL"
     gene            complement(3998..4336)
                     /gene="glnB"
                     /locus_tag="OQQ76_001422"
     CDS             complement(3998..4336)
                     /gene="glnB"
                     /locus_tag="OQQ76_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HCS1967969.1"
                     /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE
                     LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI
                     RTGEEDDAAI"
     gene            complement(4397..5731)
                     /gene="glrR"
                     /locus_tag="OQQ76_001423"
     CDS             complement(4397..5731)
                     /gene="glrR"
                     /locus_tag="OQQ76_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator GlrR"
                     /protein_id="HCS1967970.1"
                     /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV
                     LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS
                     FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV
                     LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS
                     NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT
                     HRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR
                     AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV
                     EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE"
     gene            complement(5721..6434)
                     /gene="qseG"
                     /locus_tag="OQQ76_001424"
     CDS             complement(5721..6434)
                     /gene="qseG"
                     /locus_tag="OQQ76_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system QseEF-associated
                     lipoprotein QseG"
                     /protein_id="HCS1967971.1"
                     /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP
                     VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGSWQ
                     NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER
                     QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT
                     PHESEKPAPSTHEVTPDEP"
     gene            complement(6599..8026)
                     /gene="qseE"
                     /locus_tag="OQQ76_001425"
     CDS             complement(6599..8026)
                     /gene="qseE"
                     /locus_tag="OQQ76_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417051.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two component system sensor histidine kinase
                     QseE/GlrK"
                     /protein_id="HCS1967972.1"
                     /translation="MKRWPVFPRSLRQLVMLAFLLILLPLLVLACQAWQSLNALSDQA
                     ALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHA
                     GVLPDDKLYQALRQDLNNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSR
                     GQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLG
                     NSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLA
                     DQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETV
                     VSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSS
                     HGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQG
                     ELYLVDESGQDVCFRIELPSSKNTK"
     gene            complement(8584..12471)
                     /gene="purL"
                     /locus_tag="OQQ76_001426"
                     /gene_synonym="purI"
     CDS             complement(8584..12471)
                     /gene="purL"
                     /locus_tag="OQQ76_001426"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HCS1967973.1"
                     /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN
                     APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ
                     VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFDLDDAEQLFAHHQPTPVTS
                     VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR
                     HKIFNADWIIDGEQQPKSLFRMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE
                     TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG
                     FSVSNLRILGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY
                     EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG
                     GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL
                     SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL
                     CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD
                     ALVREGITIADAVKRILHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV
                     TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW
                     MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL
                     SLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD
                     VRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGINADIASLGD
                     DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT
                     VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA
                     APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHAL
                     VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE
                     LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR
                     DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE
                     RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG"
     gene            12729..14285
                     /gene="mltF"
                     /locus_tag="OQQ76_001427"
     CDS             12729..14285
                     /gene="mltF"
                     /locus_tag="OQQ76_001427"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417053.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HCS1967974.1"
                     /translation="MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGE
                     LRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNA
                     DLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLCNLTAEQLTVAPGHVV
                     VNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELA
                     VALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVD
                     TRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLT
                     KNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHML
                     DARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS
                     LVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLF
                     SRKGSEEKQN"
     gene            complement(14282..14818)
                     /gene="tadA"
                     /locus_tag="OQQ76_001428"
     CDS             complement(14282..14818)
                     /gene="tadA"
                     /locus_tag="OQQ76_001428"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HCS1967975.1"
                     /translation="MRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAV
                     LVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCA
                     GAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF
                     RMRRQEIKAQKKAQSSTD"
     gene            complement(14843..15478)
                     /gene="yfhb"
                     /locus_tag="OQQ76_001429"
     CDS             complement(14843..15478)
                     /gene="yfhb"
                     /locus_tag="OQQ76_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase C"
                     /protein_id="HCS1967976.1"
                     /translation="MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL
                     LPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQE
                     RLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCL
                     GHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE"
     gene            15687..16535
                     /locus_tag="OQQ76_001430"
     CDS             15687..16535
                     /locus_tag="OQQ76_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417056.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HCS1967977.1"
                     /translation="MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEA
                     GVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKL
                     IKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
                     AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPN
                     ALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
                     LVKKLV"
     gene            16591..16851
                     /gene="yfhL"
                     /locus_tag="OQQ76_001431"
     CDS             16591..16851
                     /gene="yfhL"
                     /locus_tag="OQQ76_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster ferredoxin YfhL"
                     /protein_id="HCS1967978.1"
                     /translation="MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH
                     YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI"
     gene            complement(17045..17125)
                     /gene="shoB"
                     /locus_tag="OQQ76_001432"
     CDS             complement(17045..17125)
                     /gene="shoB"
                     /locus_tag="OQQ76_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin ShoB"
                     /protein_id="HCS1967979.1"
                     /translation="MTDCRYLIKRVIKIIIAVLQLILLFL"
     gene            complement(17545..17925)
                     /locus_tag="OQQ76_001433"
     CDS             complement(17545..17925)
                     /locus_tag="OQQ76_001433"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HCS1967980.1"
                     /translation="MAILGLGTDIVEIARIEAVIARSGERLARRVLSDNEWAIWKTHH
                     QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL
                     GVVNMHVTLADERHYACATVIIES"
     gene            complement(17925..18656)
                     /gene="pdxJ"
                     /locus_tag="OQQ76_001434"
     CDS             complement(17925..18656)
                     /gene="pdxJ"
                     /locus_tag="OQQ76_001434"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HCS1967981.1"
                     /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV
                     HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT
                     TEGGLDVAGQREKMRDACKRLTDAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA
                     DAKTDAEQAQELVRIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI
                     IGRAVMTGLKDAVAEMKRLMLEARG"
     gene            complement(18668..19396)
                     /gene="recO"
                     /locus_tag="OQQ76_001435"
     CDS             complement(18668..19396)
                     /gene="recO"
                     /locus_tag="OQQ76_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HCS1967982.1"
                     /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS
                     TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY
                     ETRFSELFFDYLHCIQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDD
                     TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG
                     GKPLKSRELFRQFMPKRTVKTHYE"
     gene            complement(19408..20313)
                     /gene="era"
                     /locus_tag="OQQ76_001436"
     CDS             complement(19408..20313)
                     /gene="era"
                     /locus_tag="OQQ76_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HCS1967983.1"
                     /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR
                     HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT
                     PDDEMVLNKLRDGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL
                     NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI
                     ERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE
                     LWVKVKSGWADDERALRSLGYVDDL"
     gene            complement(20310..20990)
                     /gene="rnc"
                     /locus_tag="OQQ76_001437"
     CDS             complement(20310..20990)
                     /gene="rnc"
                     /locus_tag="OQQ76_001437"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004248457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HCS1967984.1"
                     /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG
                     DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK
                     SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL
                     QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ
                     ALKKLELE"
     gene            complement(21263..22237)
                     /gene="lepB"
                     /locus_tag="OQQ76_001438"
     CDS             complement(21263..22237)
                     /gene="lepB"
                     /locus_tag="OQQ76_001438"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HCS1967985.1"
                     /translation="MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGD
                     SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI
                     LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP
                     VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK
                     ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR
                     DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH"
     gene            complement(22253..24052)
                     /gene="lepA"
                     /locus_tag="OQQ76_001439"
     CDS             complement(22253..24052)
                     /gene="lepA"
                     /locus_tag="OQQ76_001439"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HCS1967986.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
                     CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR
                     KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL
                     ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA
                     VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV
                     VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG
                     RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ
                     KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK"
     gene            complement(24250..24729)
                     /gene="rseC"
                     /locus_tag="OQQ76_001440"
     CDS             complement(24250..24729)
                     /gene="rseC"
                     /locus_tag="OQQ76_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR-reducing system protein RseC"
                     /protein_id="HCS1967987.1"
                     /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRASCGSRVLNKLG
                     PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS
                     DVAALCGAVLGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ"
     gene            complement(24726..25682)
                     /gene="rseB"
                     /locus_tag="OQQ76_001441"
     CDS             complement(24726..25682)
                     /gene="rseB"
                     /locus_tag="OQQ76_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor regulatory protein RseB"
                     /protein_id="HCS1967988.1"
                     /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE
                     LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGDEISYFEPGLEPFTL
                     NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
                     DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA
                     KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM
                     LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ"
     gene            complement(25682..26332)
                     /gene="rseA"
                     /locus_tag="OQQ76_001442"
     CDS             complement(25682..26332)
                     /gene="rseA"
                     /locus_tag="OQQ76_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-E factor RseA"
                     /protein_id="HCS1967989.1"
                     /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR
                     GDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT
                     QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN
                     GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ"
     gene            complement(26365..26940)
                     /gene="rpoE"
                     /locus_tag="OQQ76_001443"
     CDS             complement(26365..26940)
                     /gene="rpoE"
                     /locus_tag="OQQ76_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HCS1967990.1"
                     /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVLSG
                     DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE
                     AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA
                     AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR"
     gene            complement(26937..27092)
                     /gene="rseD"
                     /locus_tag="OQQ76_001444"
     CDS             complement(26937..27092)
                     /gene="rseD"
                     /locus_tag="OQQ76_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rpoE leader peptide RseD"
                     /protein_id="HCS1967991.1"
                     /translation="MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFG
                     LGRLYLG"
     gene            27348..>27879
                     /locus_tag="OQQ76_001445"
     CDS             27348..>27879
                     /locus_tag="OQQ76_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1967992.1"
                     /translation="MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG
                     STFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGV
                     LFDTHVQPNGEESYHLTREGGHSHRRILHAADATGREVQSTLVSKAQNHPNIRVLERS
                     NAVDLIVSDKIGLPGTR"
BASE COUNT         6698 a         7411 c         7033 g         6737 t
ORIGIN      
        1 agcgcgccaa taaatcaacg ctggcccggc tggcgcaaat ttcgattccg gcagtcagta
       61 atattttgca ggaactggaa agcgaaaaac gggtggtgaa tattgacgat gaaagccaga
      121 cgcgcgggca tagtagcggt acatggctga ttgcgccgga aggtgactgg acgctgtgcc
      181 tgaacgtgac gcccaccagt attgagtgtc aggttgctaa tgcttgttta agtccgaaag
      241 gtgaatttga gtatttacag attgatgcac cgacgccgca ggcgctgctg tccgaaatcg
      301 aaaaatgctg gcatcgccac cgtaaattgt ggccggaccg caccatcaat ctggcgctgg
      361 caatccacgg tcaggttgat ccggtgaccg gcgtgtcgca aaccatgccg caagcgccgt
      421 ggacaacgcc ggttgaggtg aagtatctgc tggaagagaa gctgggcgtt cgggtgatgg
      481 tcgataatga ctgcgtgatg ctggcgctgg cggagaaatg gcaaaataat tcgcaggaac
      541 gggatttctg cgtgatcaac gttgattacg gcattggctc gtcgttcgtg attaacgagc
      601 aaatttatcg cggcagtttg tatggtagcg gacaaattgg tcacaccatc gttaatccgg
      661 atggcgtcgt ctgcgactgt ggacgttacg gctgcctgga aaccgtcgcc tcgttaagtg
      721 cattaaaaaa acaggcgcgg gtatggctaa aatcacaacc ggttaatact cagcttgatc
      781 ctgaaaaact gacaaccgcg cagttaatcg ctgcctggca gagtggagaa ccgtggatca
      841 ccagctgggt tgatcgctct gccaatgcca ttggtttgag tctgtataac ttcctcaaca
      901 tcctcaatat taatcagatt tggttgtacg gtcgcagttg tgcctttggt gagaactggc
      961 ttaatactat tattcgccag acaggattta acccgttcga ccgcgacgaa ggaccgagcg
     1021 tgaaagcgac gcaaattggc ttcgggcaat taagccgcgc acaacaggtg ctgggaattg
     1081 gctatttgta tgttgaggcg cagttacgac agatttgatg gcgcgataac gtagaaaggc
     1141 ttcccgaagg aagccttttt tcaacagatt aaccgtttcg cttatgcgta aaccgggtaa
     1201 cgtgcgcaga tgtcgagaac tttacctttg atgcgctcga taacggcttc atcattgatg
     1261 ctgtccagca cgtcacacat ccagccagcc agttctttcg cttctgcttc tttgaagccg
     1321 cgacgcgtaa ttgccggagt acccacgcga ataccggagg tcacaaacgg gctcttcgga
     1381 tcgttcggta cgctgttttt gttgacggtg atgttagcac gtcccagagc ggcgtctgct
     1441 tctttaccgg tcaggttttt atcaaccaga tcaaccagga acaggtggtt atcagtgccg
     1501 ccggaaacca ctttgtagcc gcgctcgagg aacacttcta ccatcgcttt agcgtttttc
     1561 gcgacctgct gctggtaagt tttgaactca ggctccatcg cttctttcag agcaaccgct
     1621 ttaccggcga ttacgtgcat caacggaccg ccctgaccac cagggaaaac ggcagagttc
     1681 agttttttgt acagctcttc gctaccacct ttcgccagga tcaggccgcc gcgcggaccc
     1741 gccagggttt tgtgagtggt ggtagtaaca acgtgagcat gaggaaccgg gttcgggtag
     1801 acgccagcag caaccaggcc cgcaacgtgc gccatatcaa cgaacaggta agcaccgatg
     1861 ctgtcagcga tttcacgcat tttcgcccag tccaccacgc cggaatatgc agagaaacca
     1921 ccgataatca ttttcggctt gtgttctttg gcttgttttt ccagatcggc gtagtcgata
     1981 tgaccggtag catcgatacc gtaaggaacg atgttgtaca gtttaccgga gaagttaacc
     2041 ggagaaccgt gagtcaggtg accgccatgc gccaggttca tacccagaac ggtatcacct
     2101 ggttccagca gcgcggtgta gaccgcaaag ttagcctggg agccggagtg cggctggacg
     2161 ttagcgtagt cagcgccgaa cagttctttc gcacgatcga tcgccagttg ttcaacgata
     2221 tcaacatact cgcaaccgcc gtagtagcgt ttgcccggat aaccttcagc atatttgttg
     2281 gtcagctgag aaccctgcgc ctgcattacg cgcgggctgg tgtagttttc ggaggcgatc
     2341 agttcgatgt gctcttcctg acgtactttt tcctgctcca tagcctgcca cagttcggca
     2401 tcataatcgg caatgttcat ttcacgcttt aacatccgca tctcctgact cagctaacaa
     2461 taaaattttt ggcctttata ggcggtcctg ttggacaacg gcgaacagta taaccgaatc
     2521 attgtgcgat aacaggtctt gacaaaggaa tttacgcaaa cgattacctt caggctacgc
     2581 aaggctttgg agaataaaga gcttgcaacc ggaaacggat ttcttttcag gtttgtgatg
     2641 caaatttttc acttcatcac attctttctg aaaaacacca aagaaccatt tacattgcag
     2701 ggctattttt tataagatgc atttgagata catcaattaa gatgcaaaaa aaggaagacc
     2761 atatgcttga cgctcaaacc atcgctacag taaaagccac catcccttta ctggtggaaa
     2821 cggggccaaa gttaaccgcc catttctacg accgtatgtt tactcataac ccagaactca
     2881 aagaaatttt taacatgagt aaccagcgta atggcgatca acgtgaagcc ctgtttaacg
     2941 ctattgccgc ctacgccagt aatattgaaa acctgcctgc gctgctgcca gcggtagaaa
     3001 aaatcgcgca gaagcacacc agcttccaga tcaaaccgga acagtacaac atcgtcggtg
     3061 aacacctgtt ggcaacgctg gacgaaatgt tcagcccggg gcaggaagtg ctggacgcgt
     3121 ggggtaaagc ctatggtgta ctggctaatg tatttatcaa tcgcgaggcg gaaatctata
     3181 acgaaaacgc cagcaaagcc ggtggttggg aaggtactcg cgatttccgc attgtggcta
     3241 aaacaccgcg cagcgcgctt atcaccagct tcgaactgga gccggtcgac ggtggcgcag
     3301 tggcagaata ccgtccgggg caatatctcg gcgtctggct gaagccggaa ggtttcccgc
     3361 atcaggaaat tcgtcagtac tctttgactc gcaaaccgga tggcaaaggc tatcgtattg
     3421 cggtgaaacg cgaagagggt gggcaggtat ccaactggtt gcacaatcac gccaatgttg
     3481 gcgatgtcgt gaaactggtc gctccggcag gtgatttctt tatggctgtc gcagatgaca
     3541 caccagtgac gttaatctct tccggtgttg gtcaaacgcc aatgctggca atgctcgaca
     3601 cgctggcaaa agcaggccac acagcacaag tgaactggtt ccatgcggca gaaaatggcg
     3661 atgttcacgc ctttgccgat gaagttaagg aactggggca gtcactgccg cgctttaccg
     3721 cgcacacctg gtatcgtcag ccgagcgaag ccgatcgcgc taaaggtcag tttgatagcg
     3781 aaggtctgat ggatttgagc aaactggaag gtgcgttcag cgatccgaca atgcagttct
     3841 atctctgcgg cccggttggc ttcatgcagt ttaccgcgaa acagttagtg gatctgggcg
     3901 tgaagcagga aaacattcat tacgaatgct ttggcccgca taaggtgctg taatttgatg
     3961 ttgccggatg gaaacatccg gcaacccttg acgcggttta aattgccgcg tcgtcctctt
     4021 caccggtacg gatgcgaatg acccgtgcca cgtcaaagac gaagatttta ccgtcaccga
     4081 ttttgccggt ttgcgccgtg cgaataatgg tatcgacaca ggtatcgaca atgtcgtccg
     4141 gtacgacaat ctcaattttc actttcggca gaaaatccac catatactcc gcgccgcggt
     4201 acagctcggt atggcctttc tggcgaccaa agcctttcac ttcggtcacc gtcatgccgg
     4261 taataccgac ttcggccagt gcttcgcgga catcgtccag cttgaagggt tttataatcg
     4321 catcaatctt tttcatgcta ttccttgaaa aggtcgcctg tcttttgatc tgctaaacgt
     4381 aacacataac gccaattcat tccttgaaat cgtttgcatc cagctcgtgt cgggaaagca
     4441 gtttataaaa ttctgtccgg ttgcgccccg ccattctcgc cgcgtgggtg acgttgcctt
     4501 tggtaatttg cagcagctta cgcaaatagt tgagttcaaa ctgattacgt gcctcaacaa
     4561 aggttggcag cgccgtgttt tcaccctcca gcgcctgctc tactaatgca tcgctaataa
     4621 ccggagatga ggtcagcgcc acgcactgtt caatcacgtt gaccaactgg cgcacattac
     4681 ccggccagct agcggtcatc aggcgtttca tcgcatcagt ggagaacgcg cggacaaacg
     4741 gtttatgtcg ctctgccgcc tgacgcaaca ggtgatttgc cagaagcgga atgtcttctg
     4801 tgcgctctgc cagagccgga attttcaggc tgacaacgtt gaggcggtaa tagagatctt
     4861 cgcggaattc cccgcgcgcc atcgcttttg gcagatcacg gtgagtggca gaaataatcc
     4921 gcacattgat atcaatatcg cggttactgc ccagcgggcg cactttacgc tcctgcaaca
     4981 cgcgcagcag tttgacctgt aacggcgcag gcatatcgcc aatttcatcg agaaatagcg
     5041 ttccgccttc cgccgcctgg aataaacctt cgcgattgct gacagcgcca gtaaacgcgc
     5101 cacgcgcatg accaaacagc tccgactcca gcaattgctc gggcaatgcg ccacagttaa
     5161 tagcaataaa tggtttgctg ttgcgcgggc tggcgttgtg gatagcctgg gcgaaaatct
     5221 ctttcccggt gccgctctga ccgttaatca aaacgctgac gtctgattgc gccaccagcc
     5281 gcgcctgttc cagcaaacgc agcatcagcg ggctgcgggt gacaattgcc tcgcgccagc
     5341 gttcatcggt ggctggcgcg gattgctcca gcgcatcgtc aattgcctga tatagcgcgt
     5401 ctttgtcgac aggcttggtg aggaaactaa aaacgccctg ctgtgttgca gcaacggcat
     5461 cggggataga accatgcgca gtaagaataa ttactggcat tcccggctgc actttctgga
     5521 tttcagcaaa tagctgcata ccgtccattt catccatccg caggtcgctg ataactaaat
     5581 ctactttttc gcgattcagt acccgtaatc cttcagcgcc actttccgcc gtgaccacac
     5641 tgtagccttc gctggtcagg cgcaggccaa gcagtttcag caatcccgga tcgtcatcga
     5701 ccaataataa atgcgcaggt ttatggctca tcaggagtga cctcatgggt ggatggcgcg
     5761 ggcttttcac tctcgtgcgg cgtatccggc gagaaatttc cagccggttt gcgggtcgag
     5821 agctggcgtt caatatcagt caggttttcc agcttgcggg tggtgagttc cagttgctgc
     5881 tgtagaacgt gatgttgctg gcgcaatgta tccagctcgc tgtcgctgga ctgctggagt
     5941 ttactgtaac gttggcgctc ttccgccagt tgcagttgca gcgcctgacc gtcgcgccag
     6001 agttgataca gtgggcgaac ctgtgccggg atctcggtac ttaacgcttc aatacgcgcg
     6061 accagctggc ggcgctcata cggcgtaatt ttggcgtcgg cgagcaaaat cccttgttta
     6121 aaggtatttt gccagctgcc gtcgtcatat tggcgagctt gctgacgcga ctgcgcaggc
     6181 attaaacgat cagcacaatc catcgcccgc agccagtaaa gcggattggt ttcggttgat
     6241 ttaccttgca gcgcccagat gtcgctacat tcagtagaaa gatagtcagc cagttgataa
     6301 accggaattt tttcttctgc tggcgtatca atggctggct tattgtgatt ctgcacgcaa
     6361 cccagcaatg ccagacatgg cagccctgcc agccacagcc gtcggggcaa taatcgttga
     6421 aaaatgtgtc gcatattcac cagacttaaa gcctatccca gtgggcgtaa ttgttgcaga
     6481 cagtctggac atggacagcg cggagaaacc ggagcgtaca tatcgtacgt gaagatttcg
     6541 agcactgccc ggggccgaac tgacaaataa aatagcctga taggataggc tgttagcatt
     6601 atttcgtgtt tttcgacgac ggtaattcaa tgcggaaaca aacgtcttgc ccgctctcgt
     6661 cgaccagata cagttcccct tgcatacggc gaatacaatc cctggcaatg cttaatccca
     6721 gaccgctgcc cttcaccgcc ccttttcgct ggtggcttcc ctgaaaaaag ggttcgaaga
     6781 tcatggcgcg ttcctcttgc ggaatgggcg tgcctgtatt gatgacatca atataaaccc
     6841 gcgcaccatg tgaactgctg cgaaggcaaa tgttaccgga ttcagccccg tagtgcaccg
     6901 cattggagta aagattatcc agtacgctca tcagcagcat tggctccgcc aggcaagctg
     6961 ttgctttgag atcgacgtcg gtatgcatca ttttagcccg tgcgggcagg ctatgagcag
     7021 aaaccactgt ctccaccagc ggtgctaatt caacattctc cagttccacc gcactgtccg
     7081 cctgtttacg gttgtaatca agcagttgtt cgatcagttt ttgcaaattg cggctgctgc
     7141 tatcaagaat gctcaccacc tctttttgct ctggcgtaag cggcccgaca acctggtcag
     7201 ccagtaattc agtgccctcg cgcatactcg ccagtggcgt ttttaattca tgagataaat
     7261 gtcttaaaaa ttgatggcgt tgggattcca gccatgacag gcgctcactt aaccaaagaa
     7321 tacgttgccc aaccgagcgt aactcgctcg gtccactgaa cgaaacgcta ttgcccagag
     7381 aacgcccttc ccccagacgg ttgatcatgc gctcgatatt tttcaccggc ccgataatca
     7441 tccgcgtgaa aagtagcacc atcaccagac tcaccagaaa tagcaccagc gattgccaac
     7501 caaaatattg cccacgttcg gcgatttcac gctgaagttg ctgcccacga gagaacacca
     7561 ctgtgcgcgt ggcctgcacc atttcggtat tggcactggc aaaggcttca agacgcgcgg
     7621 cggcggcagc atcgggacca ctgttgttac actgaagttg ggccagattg ttcaaatcct
     7681 gacgcaatgc ctggtaaagt ttatcgtctg gcagtacgcc tgcgtgggca tcgagcattt
     7741 cgctgtaacg cttgcgctgg ctttgataaa ccttcgcaag cgtagggtcg tccagcacgc
     7801 aatactgacg gtagctacgc tccatctcca gcgccgcgtt ggtcatcgct tcactacgcc
     7861 gggcatcaat aagcgtagtg cggttaacca gcgccgcctg atcgctaagc gcattcaggc
     7921 tttgccaggc ttgacatgcc agcaccaaca ggggtagtag aattagcaaa aatgccagca
     7981 ttaccagttg tcgtaatgag cggggaaaaa cgggccagcg tttcaaggtg ttactctcgt
     8041 cagacgcgaa tagcctgatg ctaaccgagg ggaagttcag atacaacaaa gccgggaatt
     8101 acccggcttt gttatggaat aaggcggtgc ctaactcgac gtttcgcccg atggttgata
     8161 tagctacgct gatatcagaa gttggacggc aggcaccttg ttgtgcgtca ttcgaatttt
     8221 atgtagcacg tcccgaaggg gctgacataa gtcggtgaat gagccactgc ttactattat
     8281 gcagtaactg tgccaataaa gaaaatagtt tggtaacgta ctgattatac gttgctttga
     8341 gggatttatg gcttcttcgc tatttgaatg taaatcagcc actgtgtcgc taaaaagaga
     8401 caacttaaga taaacttatt agattacaat aaaatcaatc acttaagtgt cgtcagaagg
     8461 cgacacggta aaccacccat tgtcgtgatt tacagacaca aaaaagctcc cggagttggg
     8521 agcttatgat agtggttggt gcttaatgcc gcatccgggc tgcaaaacca atgaactgat
     8581 gaattacccc aactgcttac gcgcattgcg gaaaatgcgc atccatgggc catcctcgcc
     8641 ccagttttcc ggatgccagg agttgctgac agtacggaaa acacgttccg ggtgcggcat
     8701 cataatggtg actcgaccac tttcagtcgt gactgccgta ataccgttcg gtgaaccgtt
     8761 cgggttagcc gggtaggttt cagtgacttt gccgaagtta tcgacatagc gcagtgccac
     8821 cagccctttg ctttccagtg ccgccagatg cgccgcatca cgcacttcca cgcgcccttc
     8881 accatgagag acagcaatcg gcatttgcga gcccaccatc ccctgcaaca gcagagacgg
     8941 gctttgggtt acttcgacca ggctgaaacg cgcttcaaag cgatcggagg tattgcgcac
     9001 aaaacgtggc cacaactcac tacctgggat cagttcgcgc aggttagaca tcatctggca
     9061 accgttacat acccccagcg ccagcgtttg cggacggtgg aagaaggttg caaactcatc
     9121 gcgtacacgg tcattgaaca ggattgactt cgcccaacct tcaccggcac ccagcacatc
     9181 accgtaggag aaaccaccgc acgcgaccag ggcgtggaaa tcttccaggc ccgtgcgtcc
     9241 ggtcagcagg tcactcatat gcacgtcgat agcatcaaag cctgcacggt ggaaagctgc
     9301 cgccatttca acatgcgagt tcacgccctg ctcacgcagt acggcaactt tcggacgtgc
     9361 gccagtggca atatacggtg ctgccacatc ttcgttgata tcgaacgaca gttttacatt
     9421 caggcccgga tcggcgtcgt tagatttcgc ctgatgctcc tgatcggcac actccgggtt
     9481 gtcacgcagg cgctgcatct gccaggtagt ttctgcccac cagacacgca acgtggtgcg
     9541 gctttcgctg aatacagtct gcccgttggc ggtaatcaca aaacggtcac cggaaaccgc
     9601 ctgccctaca taatggacac aatcagcaag cccatgctgt gccagtacgg actcgaccgc
     9661 ttcacggtca gcggcacgaa cctgaatcac cgcacccagt tcttcgttaa acaacgccgc
     9721 caggcgatcg tcgcccagag aggcaatatc cgcgttaatg ccgcaatgac cagcaaaggc
     9781 catttccgcc agcgttacca gcaggccgcc atcagagcgg tcgtggtatg cgagcagctt
     9841 acgctgtgca accagcgcct gaatcgcgtc atagaagcct ttcagttgcg cgacgtcgcg
     9901 tacatctgcc ggtttgtcgc caagctgacg ataaacctgc gccagcgccg ttgcgcccag
     9961 cgcgttattg cctttgccca aatcaatcag caatagtgcg ttatcttcgg tagaaagctg
    10021 tggcgtgatg gtgtgacgca catcttccac gcgggcaaat gcagaaatca ccagcgacag
    10081 cggcgacgtc atttcgcgct cttcgttacc ttcctgccag cgggttttca tcgacataga
    10141 gtctttaccc accgggatcg tcaggcccag cgccggacaa agctcttcgc ccacggcttt
    10201 aacggcttca tacaggcccg catcttcacc agggtggcct gccgccgcca tccagttggc
    10261 ggaaagttta atgcgtttga tatcgccaat ctgtgttgcg gcaatattgg ttaacgcttc
    10321 accgaccgcc agacgggcag aggcggcgaa atccagcagc gcaaccggcg cacgctcgcc
    10381 aatcgccatc gcttcaccgt agtagctgtc gaggctggcg gtagtgaccg cgcagttagc
    10441 gaccggcacc tgccacggac ccaccatctg atcgcgcgct accatgccag ttacgctgcg
    10501 gtcaccgatg gtcaccagga aagttttctc cgccacggtc ggcagatgca gtatgcgttt
    10561 caccgcgtct gcaatggtga tcccttcacg gaccagcgca tcgcccttcg ctttcagcgt
    10621 ttgtacatcg cgggtcatct tcggcgtttt accaagtagg acgtccagcg gcagatcgat
    10681 cggctgatta tcaaaatgac gatcgtgtag agaaagatgc agttcttcgg tcgcttcacc
    10741 aatcaccgcg tagggtgcgc gctcacgctt acacagttcg tcaaacagcg gtaattgatc
    10801 ggcagcaacc gccagcacgt agcgttcctg ggattcgtta caccagattt ccagcgggct
    10861 catgcctggc tcgtcgctca gaatgtcgcg cagttcaaat ttaccgccac gcccgccgtc
    10921 gctcaccagt tccggcatag cgttagaaag accgcctgcg ccaacgtcgt ggataaacag
    10981 tattgggttg gcatcaccaa gctgccagca acggtcaatc acttcctggc agcgacgctc
    11041 catctccggg ttgtcgcgct gtacggaagc aaagtcgagg tcggcatcag actgaccaga
    11101 cgccatggaa gacgccgcgc cgccgccaag accgatgttc attgccgggc cgccgagaac
    11161 gaccagcttc gcgccaacgt tgatctcgcc tttttgtacg tgatcggcgc gaatgttgcc
    11221 gatcccgccc gccagcatga tcggtttgtg ataaccgcgc agctcttcgc cgttgtggct
    11281 gttcactttt tcttcataag tacggaagta gccgttcagt gccggacgac caaattcgtt
    11341 gttaaacgcc gcaccgccca gcgggccttc ggtcatgatg tccagcgcgg tgacaatgcg
    11401 ctcaggctta ccgaaatctt cttcccacgg ctgttcgaag ccaagaattc gcaggttgga
    11461 aacggagaaa ccaaccaaac ccgctttcgg cttcgcgccg cgcccggtgg caccttcatc
    11521 gcggatttca ccgccggaac cggtcgccgc gcccggccac ggagaaatcg ccgtcgggtg
    11581 gttgtgagtt tcgactttca tcagaatatg cgccggttcc tgatggaaat catagcggcc
    11641 cgtttcgtgg tcagcaaagt agcggcccac ttcagaacct tccattacgg cggcgttatc
    11701 tttataagca gagagaacgt gatctggcgt ggtttcgaaa gtatttttga tcatcctgaa
    11761 cagcgatttc ggctgttgtt caccgtcgat aatccagtcg gcgttaaaaa ttttgtggcg
    11821 gcagtgctca gagttcgcct gagcgaacat atacagctcg atgtcgttcg ggttacgacc
    11881 aagctttgtg aaagcatcct gcagatagtc aatttcatct tccgccagag ccaggccaag
    11941 acgcaggtta gcgtcgatca gcgcctgacg gccctgcccc agcaaatcaa cgcttgtgac
    12001 cggagtcggt tgatggtggg caaacaactg ctctgcatca tctaaatcaa aaaagacagt
    12061 ttccatcatg cggtcgtgca gttcagcggt aacctgctgc cattgttcat tggtcagcgt
    12121 accggcttct atatagtaag caacgccgcg ctcaaggcgg tttacctgtt gtagcccgca
    12181 gttatgggca atatcggtcg ctttcgaaga ccagggagag atggtgccag gacgcggggt
    12241 caccagcagg agtttgcctt gcggggcgtg gctggcgagt gccggaccat atttcagcag
    12301 gcgttcaagt tgtgcgtgct catcatcgtt taacggcgca ttgaggtcag caaaatggac
    12361 atactcggcg taaatattgt gaaccgggag cctggcagcc tgaaaacgtg ccagcagttt
    12421 gttgattcgg aatgccgaca gtgcaggcga accacgcaga atttccatca taagtctctc
    12481 gtcttctaag ctttcggtgt acccaagggg gggaaacggg cgtcattata aagaatctga
    12541 tgcgctgacg aaaccgtttg cgtggaaata aaatcaccat cgtgaattag caacgcgtgc
    12601 cgccaatggc tgtaataagt tgccatctgg cgcaggttta cgcaaaatgc cgctcattta
    12661 tgagtaaacc tttcactatt attacgtttt ttcaagctgg gacgcgcacg acacagagaa
    12721 ttaactaatt gaaaaaatta aagattaatt atctgttcat cggcattctg gcactgctgc
    12781 tcgcggtcgc tctctggcca tccattccct ggtttggtaa agccgacaac cgtatcgccg
    12841 ccattcaagc gcggggagag ttgcgtgtga gcaccattca tactcccctg acttataacg
    12901 aaatcaacgg gaaacctttt ggcctggatt acgaactggc gaaacagttt gccgattacc
    12961 tcggcgtaaa actgaaagtg accgtgcggc agaatatcag ccagctgttt gacgaccttg
    13021 ataatggtaa cgccgacctg ctggcggcag gactggtcta taacagtgag cgggtaaaaa
    13081 attatcagcc tggccctacc tattattccg tgtcacaaca actggtttat aaagtgggtc
    13141 agtatcgccc acgtacgctg tgcaacctga cggcggagca actcaccgtt gcaccgggtc
    13201 atgtggtggt taacgatctc cagaccctga aagaaacaaa attcccggaa ttaagctgga
    13261 aggtagacga caaaaaaggc tctgcggaat taatggaaga tgtcatcgaa ggaaaactcg
    13321 attacaccat tgctgattct gtcgccatca gcctgtttca gcgcgttcac ccggagctcg
    13381 ccgtagcgct cgatatcacc gatgaacaac cggtgacttg gtttagcccg ttagatggcg
    13441 ataataccct ttccgccgcc ctgctcgact tcttcaacga aatgaatgaa gacggtacgc
    13501 tggcacgcat tgaagagaaa tacctggggc atggcgatga ttttgattac gtcgatacgc
    13561 gcacattttt acgcgccgtc gatgcggtac tgccgcagtt aaagcccctg tttgagaaat
    13621 acgccgaaga aattgactgg cgtttgctgg ccgctattgc ttatcaggaa tcgcactggg
    13681 atgcacaggc cacttcaccg acgggtgtgc gcggcatgat gatgttaacc aaaaataccg
    13741 cgcaaagcct cggcattacg gatcgtaccg atgccgaaca gagcatcagc ggtggcgtgc
    13801 gttatttgca ggatatgatg agtaaagtgc cggaaagtgt gccggagaac gagcggatct
    13861 ggtttgccct cgctgcgtac aatatgggct atgcgcatat gctggatgcc cgcgccctga
    13921 cggcaaaaac caaagggaat cctgacagtt gggctgacgt aaaacagcgt ctgcctttac
    13981 ttagccagaa accctattac agcaagctga cttacggcta cgctcgtgga catgaagcct
    14041 acgcttatgt cgaaaatatt cgtaagtatc aaattagcct ggtgggttat ctgcaagaga
    14101 aagagaagca ggctacagaa gcggcgatgc aactggcgca ggattatccg gcggtatcgc
    14161 ctacggagtt gggcaaagag aaatttcctt ttctctcgtt tctttcccag tcgtcatcaa
    14221 actatttgac ccattctccc tctctgctgt tttccaggaa agggagtgaa gagaaacaaa
    14281 attaatccgt cgaggattgc gcttttttct gcgctttaat ttcctggcgg cgcatgcgaa
    14341 agaagtcact gagcaacgcc gcgcactcat ccgccagtat tccttccgta atttccactc
    14401 ggtgattcat acccggatga tgcagcacat ccattaaaga tcccgcagcg ccagttttcg
    14461 cgtcacgcgc accaaagacc acgcgaccaa tgcgactgtg gatcatcgct ccggcacaca
    14521 ttacacatgg ttcaagcgtg acatacaacg tggcgtcgat cagacgataa ttttgcatca
    14581 ccagaccacc ctgccgcagg gccatgattt ctgcatgtgc ggtgggatca tggcgaccaa
    14641 tcgggcggtt ccagccttcg ccgattaccc gattgttatg cactaatacc gcgccgaccg
    14701 gcacttcccg ctcatcccag gcacgtttcg ccagcgtcag cgcgtgacgc atccagtatt
    14761 cgtggctaaa ttcgacttca gacaaaaaga aaactccggt tataaaagcg cggcgcatta
    14821 tacacggacg ctatgcttta ctctattcca gttgctggag ttcaccgcgc ggggttactc
    14881 gccaacgatg ctgacagaaa taaagcagcg gattgtcctg attactgtcg ctatagccac
    14941 tgtacagccg cagcggagtg ccgattttgc gctccagttg tgcgaccttt tcatgtccca
    15001 gacaacgcat cgtcaatacc caaccaccat agccacgctg aatttggctg gcgataagat
    15061 taacccgcgg cagccagggc gtatcgaaat aaaccgcttc aaccagcggc tgcggagagc
    15121 cggtaatcaa ccagatatca gcatcggaac ttaacaggta ggtggttaat cgctcctgaa
    15181 ccagcggaaa ggcggtaaca ttgtcgcgaa accagcgcac gaaatcggcc tgcaacgtct
    15241 gtaaacgtgc ttcgctgtga ccaaaagtgc acccccacag aagcagactc atcggccagc
    15301 gtgccgcacg accttttatc aataacgcaa tggctataat cggtaacaac ggcaggacaa
    15361 gtaacgcatt caacggttgg cgacgtagta aatagcgcag aaaactgccg aacatatcct
    15421 gctgatgcaa tgttccatct aagtcaaaaa acaccacacg acgctcgtga gttgccaaac
    15481 catactcctc tggactgaaa catcctgatt aattttcgct actacatagc ctaacagata
    15541 gatcatcact tttccggcaa caatcgaccg catcatggct aactggaatt tttaattcat
    15601 ggcaattagc ggcaatggaa tataaaattc actcgcgtgt gtctcatatt gcctgttgtc
    15661 gccactattt catcgcgagg aaagatatga acggcttact tcgtatccgt cagcgttacc
    15721 aagggcttgc ccagagtgat aaaaaactgg cggattatct gctgctacaa cctgatacgg
    15781 cgcgccattt aagctctcag caactggcca acgaagccgg agtcagtcag tccagcgtcg
    15841 tgaagttcgc gcaaaaactc ggctataaag gttttccggc gcttaagttg gcgttgagtg
    15901 aagcgctggc aagccagccg gaatcgccct ccgtgcccat tcataaccaa atccgcggtg
    15961 atgatccgtt acggctggtc ggcgaaaaac tgattaaaga aaatactgcc gctatgtacg
    16021 caacgctaaa cgttaatagt gaagagaaac tgcatgaatg cgtaacaatg ttgcgctctg
    16081 cgcggcggat aattctgacc ggtattggcg cttcgggtct ggtggcgcaa aactttgcct
    16141 ggaagctgat gaagattggc ttcaatgctg ccgcagtgcg cgatatgcat gcgctactcg
    16201 caacagtaca ggcgtcgtcc cctgacgatc tgttattagc catttcctac accggtgtac
    16261 gacgcgagtt aaacctggcg gcagatgaga tgctgcgagt gggcggaaaa gtgctggcga
    16321 ttaccggctt tactccgaat gccctgcaac agcgtgcttc tcattgcctg tataccattg
    16381 ccgaagaaca agcgacaaac agtgcttcaa tctctgcttg tcacgctcag ggaatgttaa
    16441 cggatttgct gttcattgcg ctgattcagc aggatctgga actggcacca gaacgtattc
    16501 gtcatagtga agcgctggtg aaaaaactgg tctgagtaaa gaatgcgcgt ataatgcccg
    16561 cccggtttgt gttgttttga gagtttcctt atggcgttgt taatcactaa aaaatgcatc
    16621 aattgtgata tgtgtgaacc cgaatgcccg aatgaggcga tttcaatggg agatcatatc
    16681 tacgagatta acagcgataa gtgtaccgaa tgcgtagggc actacgagac accaacctgc
    16741 cagaaggtgt gcccgatccc caatactatt gtgaaagatc cggcgcatgt cgagacagaa
    16801 gaacagttgt gggataaatt tgtgctgatg caccacgcgg ataaaattta atattctact
    16861 ctggaagtag agtattaatt atattactgg gaagccttaa cgccattata tttatttaat
    16921 tgatgacatt agcataatca ttcactaagt taatttatat agtatctgcc aagacactta
    16981 tttatagtta ttaaaggcgc gtccgattgg ttcaccggac gcaccttaag tacgtttact
    17041 tgtgttataa gaacagaagg atcagctgta aaacagcaat gatgattttg atgacccgtt
    17101 taatcaggta tcggcaatca gtcattcgtt tttccttaaa caaggaatgc agccgttcag
    17161 attagccctt acatctcccc aaaactgaac gtgcgagtta ttgagggtgc atgctgcact
    17221 ccacaccaga gctttgacga caccactcgt ttcaatgggg gaattctgtg gcatggtgta
    17281 aagcacagca aaatcttcaa taacgaagcc aattttaatg tacttacgaa ttggcggtca
    17341 cgttaatctt tccatcaata ttgctttctt cgtaaaggct cgagttttta tgctaaagat
    17401 tgcaagttgc ttgtaaaaga taagtacact gatccataat cgctgttgtt gagggtgcat
    17461 gctgcacaaa attaaagtta aaaagtaaaa cccccgttcc ttaccagttc gggggtttta
    17521 ctttttaaag agaacggtat tattttaact ttcaataatt accgtggcac aagcatagtg
    17581 gcgttcatct gccagcgtta catgcatatt tacaacgccg agcttttccg ccagttttaa
    17641 tgcctcaccc catagccgta gccgtggttt gccgagctca tcattgaata cttcaaattg
    17701 attaaacgcc agaccattgc ggatcccggt gccaaacgct tttgctgcgg cttctttcac
    17761 agcaaaacgc ttcgccagaa aacgcaccgg ctggtggtgc gttttccaga ttgcccattc
    17821 gttatcgctt aatacgcggc gtgccaggcg ctcaccggat cgggcgatca ctgcttctat
    17881 gcgagcgatc tctacgatat ccgtgcctaa acctaatatt gccattagcc acgcgcttcc
    17941 agcatcagac gcttcatttc tgccaccgca tctttcagtc cggtcatcac tgcacggcca
    18001 ataatggcat gaccgatatt cagttcatgc atctcaggga tggcggcaat ggctttcacg
    18061 ttgtgatagg tcagaccgtg tccggcgtta actttcagac cgagactagc ggcaaaggtc
    18121 gcggctttgg cgatacgcac cagctcttgc gcctgttcgg cgtcagtttt ggcatcagca
    18181 tagcaaccgg tgtggatctc gataaacggt gcgccaacct ctgccgcagc tttgatctgc
    18241 tcttcatcgg cgtcgataaa gagagaaacc tgaatcccgg catctgtcag acgtttgcag
    18301 gcatcgcgca ttttttcacg ctgccctgca acgtccaggc cgccttcggt tgttacttcc
    18361 tgacgctttt ccggtaccag gcagcaaaaa tgtggcttcg tctcaacggc gatcgccagc
    18421 atctcttcgg tcacggccat ctccagattc attcgggtat ccagcgtctg ccgcaggatg
    18481 cgcacatcgc ggtcagtaat gtggcggcga tcttcacgta aatgcacggt aatgccgtcc
    18541 gctcccgcct gctcggcaat aaacgccgcc tgcaccggat ccgggtaagc agtaccgcgt
    18601 gcgttacgca gcgttgcaat atggtcaatg ttgacgccta acagtaattc agccatgaca
    18661 atcctcatca ttcataatgt gttttcaccg ttcgcttagg cataaactgc cggaacagtt
    18721 ccctgctctt taatggttta ccgccaagat acggcttaag cgccatgcgg gtaaagcgtt
    18781 tcgcggcgcg tagtgtgtct gcgtcaggaa attcccgcgc gtttaacgct tttaactgcc
    18841 ttccggtgaa cgttttattg tcgataacga cgcttgcgat aaaccctttt tcttcgcgat
    18901 aacgatacgt catggtgtca tctaccggct cgccgctacc cgcgcaatag gtaaaattga
    18961 cgccatagcc cagatgcccg agcagtgcca gttcaaagcg gcgcagcgcg ggttctggcg
    19021 taccagtggc acctgcaaga gactgaatgc agtgcaaata atcgaaaaag agttcagaga
    19081 agcgcgtctc gtattccagt acgcgggaga gaagttcgtt gatgtacaga ccgctgtaaa
    19141 gcgtgatacc gcttaatggc agcgccagcg agacagcttc agcactgcgc agcgttttga
    19201 cttcgccacg cccgccgaaa cgtagcaaga gaggggtgaa aggctgtaat gcacctttca
    19261 gagtagagcg tttagagcgt gcgcctttgg caaccagacg cacgcgaccc gattcctccg
    19321 tgaagacgtc cagcatcagg ctggtttcgc tccacgggcg actatgcagg acaaatgcgc
    19381 gctgccagcc ttccatcgga gtgactctta aagatcgtca acgtaaccga gactgcgcag
    19441 tgcgcgttcg tcgtcggccc aaccggattt cacttttacc cacagttcaa ggtggacagg
    19501 cgcttcgaac atttcctgca tgtctttacg cgcttcaatc ccgatggttt tgatcttggc
    19561 ccctttgttg ccaataacca tcttcttctg cccttcacgc tcaacgagaa tcaaaccatt
    19621 gatgtcataa ccaccgcgtt cgttagagac gaaacgttcg atctccacgg tcacggagta
    19681 cggcagttca gcgccgagga aacgcatcag tttttcgcgg atgatttcag acgccataaa
    19741 acgctgtgag cgatcggtga tgtaatcttc cgggaagtga tgggtcgctt caggcagatg
    19801 cttacgcacg attgctgcga tagtgtcgac attcagcccg gtttcagcag agatcggcac
    19861 gatatcgagg aagttcatct gacttgccag gaactgtaag tgcggcagca gatcggcttt
    19921 ttcctgcacg ttatccactt tgttcaccgc gaggatcacc ggcgctttgc catcgcgcag
    19981 tttgttgagc accatttcgt cgtccggcgt ccagcgggtg ccttcaacga caaaaatcac
    20041 cagctcaacg tcgccaatag agctgctcgc cgctttgttc atcaggcggt taatagcgcg
    20101 tttttcttcc atatgcaggc caggggtatc aacgtagatc gcctgatacg cgccttcagt
    20161 atggatcccc acaatgcggt gacgagttgt ttgcgctttg cgggaggtga tggagatctt
    20221 ctgccccagc agtttgttca acaatgtgga tttgccaacg ttcggacgtc cgacgatggc
    20281 aataaatccg cagtaacttt tatcgatgct cattccagct ccagtttttt caacgcctgt
    20341 tcggcggcag cctgctcagc cttacgacgg cttgaacctg tgccaaccac cggttcactc
    20401 aggccgctga cctggcagtg gatagtaaat tcctgatcgt gcgcttcgcc acgtacctgg
    20461 actaccagat aagtcggcag cggcagatgg cgaccctgca aatattcttg caagcgcgtt
    20521 ttcggatctt tttgtttatc gcctgggcta atttcgtcca aacgagtttg ataccagttg
    20581 aggattaatt tctcgacggt ttgaatatca ctgtcgagga atacgccacc aattaatgct
    20641 tcgacggtat cggcgagaat tgactcacga cgaaatccac cgcttttaag ttcacctggc
    20701 cctaaacgta agcactcgcc taactcaaat tcgcgcgcca gttccgccag cgtattgcca
    20761 cggaccagcg tggcgcgcat ccggctcata tcgccttcat ccacacgagg gaaacggtga
    20821 taaagcgcat tggcgataac gtagctcaga atagagtcgc ctaaaaattc taaacgctcg
    20881 ttatgtttgc tgctggcact acgatgagtt aatgcctgct gcaacagttc ctgatgatta
    20941 aaagtgtagc ccagcttccg ttgaagccga ttaattacga tggggttcat gcgataccaa
    21001 taaataaatg cgtcaacaat tcagcacacg aaacagacct gatatacatg gctctgctaa
    21061 ctgcttcgct gcagtttcag tttaccggta tatggggacc aacgctgttt cgtgtgccgt
    21121 ggcaacctgg aggtgccaac cttaaacttc gggggaatat tctatacaca acgacggggg
    21181 atgtcgttag ccacgggaga tttatctcat aaataattca cgttgtcgcc ataacggcga
    21241 caacgtgaac gaagatgggc tattaatgga tgccgccaat gcgacttaag cgcacacctg
    21301 tcggccattc gccttcttgc ttatcgaaac tcatccagat agccgttgcc cgaccgacca
    21361 gattcgcttc aggcacaaaa ccccagtaac ggctgtccgc gctgttgtcg cggttgtcgc
    21421 ccatcatgaa gtattgtccc ggcggaacaa tccaggttgc cagttgttgc cctggctgct
    21481 ggtaatacat ccccacctgg tcctgcgcaa tcggcactgt cagaattcgg tgcgtcacat
    21541 cacccagtgt ctctttacgc tcggaaagac gaattccatt ttctttggtt tcgtttttcg
    21601 gcacttcaaa gaatccgctg gtcgcttccc caccattacg gcgtgagaag gtctgaacga
    21661 aatcgctcgg ttccacgttg gagtaggtga ccggtagcgc gttttcacac gcctggccgg
    21721 aactgcatcc cggttgaatc gtcagctctt ttgagaccgg atcgtaagtg actttatcgc
    21781 ccggtaaacc caccgcgcgc ttgatgtaat caagctttgg atcttccgga tatttaaaga
    21841 ccacgatatc gccgcgtttc ggatgaccgg tttcgatcag cgttttctgg tagataggat
    21901 ctttaatgcc ataagcaaac ttctctacca gaataaaatc accgattaac agagtcggca
    21961 tcatcgaacc tgacgggatc tggaacggtt cataaataaa cgaacgtaca atcaatacga
    22021 tagccagcac cggaaaaaca gaagcaccgg tttccagcca gccaggcttc ggcgcaacct
    22081 ttttcagggt tgctttatcc agtgagtcac cggcagccgc ctgcgccgct gcctgacgtt
    22141 cccgccgttt aggtgcgaaa aagaatttat ccacgcacca taaaatgccc gtcaccagtg
    22201 tggcaatcac cagaatcagg gcaaacatat tcgccatgcc aactcctaag ggttatttgt
    22261 tgtctttgcc gacgtgcaga atggcgagga acgcttcctg cggcagctcg acgttaccga
    22321 tctgcttcat gcgtttctta ccttctttct gcttctgcag cagctttttc ttacggctga
    22381 tatcgccgcc ataacattta gccagtacgt ttttacgcag ctgtttcacg gtggatcgcg
    22441 caataatgtg cgtaccaatc gctgcctgaa tggcgatatc aaactgctgg cgtgggatca
    22501 gatctttcat cttctccacc aactcgcgac cgcggttttg cgaattatca cggtgggtga
    22561 tcagcgccaa cgcatcaaca cgttcaccgt tgattaatac gtctacacgt accatgtcgg
    22621 acgcctggaa gcgtttgaag ttgtaatcca gagacgcata accacgcgag gtagatttca
    22681 ggcgatcgaa gaagtcgagc accacttccg ccatcgggat ctcgtacgtc agcgccacct
    22741 gattaccgtg gtaaaccata ttggtctgca cgccgcgttt ttctacgcac agcgtaataa
    22801 cgttgccgag atatgcctgc ggcagcagca tgtgacactc tgcaatcggc tcgcgcagtt
    22861 cgtaaatgtt atttaccgca ggcagcttgg atgggctgtc gacgtagata acttcccttg
    22921 acgtggtttc aacttcatac actacggtcg gcgcagtggt gatcagatcc agatcgtatt
    22981 cacgttccag acgttcctgg atgatctcca tgtgcagcag gccaaggaag ccgcagcgga
    23041 aaccaaagcc cagcgcgctg gagctttccg gctcatagaa cagtgaggca tcattcaggc
    23101 tgagtttacc cagcgcgtca cggaaggctt catagtcgtc ggaacttacc gggaacagac
    23161 cggcgtatac ctgcggtttg actttcttaa agccaggcag cgccttttct gccggattac
    23221 gcgccagcgt taaggtatcg ccgactggag cgccgtggat atctttaatc gcacatacca
    23281 gccagcctac ttcgccacat ttcagttcag tgcggtcaac ctgtttcggc gtgaagatgc
    23341 ccagacggtc ggcgttatag gtctgcccgg tactcatgac tttcactttg tcgcccttac
    23401 gcagggtgcc gtttttaata cggataagtg aaacaacgcc caggtagttg tcgaaccatg
    23461 agtcgataat tagtgcctgc aacgggcctt ccggatcgcc ttccggcggc ggaatgtcgc
    23521 gcaccagacg ttcgagaacg tcctgcacgc caacgccggt tttcgctgaa cagcgcaccg
    23581 cgtcagtggc gtcgatgccg acgatatctt caatttcttc cgccacgcgt tcaggatcgg
    23641 ctgccggcag gtcaatcttg ttcagtactg gcaccacttc gagatccatt tccatggcgg
    23701 tgtagcagtt tgccagggtt tgcgcttcca cgccctgccc ggcgtcgacc accagcaatg
    23761 caccttcaca ggcagccagc gaacgggaaa cttcatagga gaagtctacg tggcccgggg
    23821 tgtcgataaa gttaagctga taggtttcgc cgtcagacgc tttgtagtcc agcgtcacgc
    23881 tttgcgcttt gatggtaatg ccacgctcac gctcaagatc catggaatcg agaacctgcg
    23941 cctccatttc acggtcagac aggccaccgc agatctggat aatacggtca gacagcgtcg
    24001 atttaccgtg gtcaatgtga gctatgatcg aaaagttacg tatattcttc ataaagtatg
    24061 attattgtgc cttaatgccc ggttaaccag gcttttagaa gtcgctgttc tgagcttaac
    24121 gtctgtatta atagaaacgc cgcattctac actacaacat tgaggcgagg aaatgttcat
    24181 accgtatgga ttgtggtatc tggaaacgtc ctcgcatttg ttatgcaaaa tgcaacaaag
    24241 ccagtgaaat cactggctcg cgtcttccga agatgtttca aatcgcacaa ggccaggcgg
    24301 caatgccacg cttaagatga tcggttgcca ttctgcccgg gcagcaaact tacgcgagta
    24361 gccgcgcgca atcaggaacc cgccaatacc gccgaggacc gcaccacata atgctgcgac
    24421 gtcagaagca aagagtagct gaaatagcga agcgatgagg aataatccca ccagcggcga
    24481 catataaacc agtaatgcgg agctaagcag gctgccttcg gcgatcccca attccacttt
    24541 ttgccccggc actaacggtt catcacaggg tacgacaatg gtatgcgtgg tttgcgggcc
    24601 aagtttattc aacacgcggc taccgcaact ggcgcgtgaa gcgcagctgc tgcatgaagc
    24661 tttaacatca caactgacca gcgcctgccc gttttgccag gagacgacgg tagcccactc
    24721 tttgatcatt gcgctgcccc gaacttaata ttctcggcaa tgcgtttcgc cgtttgcggc
    24781 ggcagttcac cgacaatggt gatttcggcg ttatcacgta cgcttgtact gacggttctg
    24841 cgtccggtgc gcaacatctg atcggtgctc gatggcgtag cgcggttaac gtttaccgag
    24901 aagctgaata atccgtcaga atagagacgt gattcgatag gcatgttgtc catcgtcggt
    24961 agcggacgtc gactactgga aacttcgcta aaaccctgtg gcaaccaggt tggcgtccag
    25021 ctgaatttag ctttttcacc tacaggaaca gaaagcaacg gcggcaaatt tgccttcgcc
    25081 agcgtctgca tactgctgct gatatcctga ttgacgttaa aagcaatcac gcgaaattgt
    25141 tccagcgttt caccatcgcg atcaaggaga tcaacccgca tcggtaattt cgattcggtg
    25201 tccatccaca cgatgtagct gtagcgtgta ccatctcggg caaccacgcg aatgacttcg
    25261 caaagacgat cagcaatacg cgtgcgcccg acggagataa agtcgtagta aggagaaagg
    25321 cgtttgaaat cggtatagat gagcgatggc agagaatcaa caatgtaatc gccattaagc
    25381 gtgaacggtt caagtcccgg ttcaaaatag ctgatttcat cgccgcgctg taccacttcc
    25441 cggcgcgggc catccatttg caacaattgt gcaagaggac ggttatcgag gcgtgcatgt
    25501 cgataacgca gagactcaac accctgttta ttgatgctga tgaatgacag ctcgtaattc
    25561 agtgactgac tggccaggtt catctgctgt aataacgccc cggacgcggg agtggccgag
    25621 gcgttagcag agaataacag gctacctgtc actaatgaca tggcaaacca aagttgcttc
    25681 attactgcga ttgcgttcct aaagtttgaa ttcctggcac ctgtacagcg gcttgctggg
    25741 tttgcgcctg ctcaaactga agctgttcag agtggagtcg gcgttgcagt tcgtaatcct
    25801 gcaacattgc attaatgcga cgacgctgct cctgtacctg ctgctgttga ccattgtttg
    25861 cggtcgcttc agaaggtact cccaggctta ccgggctggc tttacccatc atcggcagtg
    25921 tattaaatac cggcgtttcg ggctgctggg acgtttcaga ttgtccatta tagtgctgga
    25981 cgccaacgat aactgcaagc gatacgcatg ctgctacgcc catttgggta agctgtgccg
    26041 cccacggacg tactttctgc cagaatggca ttttctgcca ttgatgcggc gcaggctggg
    26101 cttccgggat caatgtcgcc ggttgacgta ctggctcttc ttcaatggcg gccatcacgc
    26161 gtgaagagat atcgaaatgg agcacctcgg gagtatcacc ccgcattgag tcacggatta
    26221 agtgatagct ttcccaggtt ttctgcattt ctgggttatg agccagttcg ttaagcagct
    26281 cactatccag cgtttcgcca tccattaaag cggaaagttg ttctttctgc atgcctaata
    26341 cccttatcca gtatcccgct atcgtcaacg cctgataagc ggttgaactt tgttatcaat
    26401 agcttccctc gctcggaaga tacgtgaacg caccgtacct accggacaat ccatgatagc
    26461 ggctatctct tcatagctca ggccatccag ctcccgcaag gttattgcca tgcgcaaatc
    26521 ttccgggagg gactcaatag ttcggaaaac tatctgtctc agttcttctg acaacattaa
    26581 gttctcaggg ttcgaaattt ctttcaacgc gccgccactt tcgaagtttt cagcttcaat
    26641 ggcatccaca tcactggaag gtggacgacg cccctgagca accaggtaat ttttcgctgt
    26701 atttacagca atccgataca gccatgtata aaaagcgcta tctccccgga acgaatccag
    26761 cgcacgatag gctttaataa aagcttcttg taccacatcg ggaacatcac ccgacagcac
    26821 atagcgggaa accagactcg ccactttatg ctgatagcgc actaccagta agttaaaggc
    26881 tttctgatct cccttctgga cccgttcaac caggacctgg tccgttaact gctcgctcat
    26941 ccgaggtaaa gtctccccaa accaaatttc cacgcgctat cgaaacgcca ctccattagc
    27001 tgcaatttga gcaagcaaag ggttagagtg tctcgttttt gtaaagttcc gtaacgcatc
    27061 tgtttttgtt tgtcatgctg tagacggatc attatctatc attataagtc tacagaatct
    27121 gaacatcgca ttatctgtgt agaaatgccc atttaactgc ctgaagagta acccaacggc
    27181 ctttttattt caccacctaa tcctccacca gccagtaact tctctttttc tcgccgccct
    27241 gcatcagcgt gtttagcaac tgtaacaaat attaaaatag caggtgttta ttcgcacaac
    27301 atgatgctat accgaccaaa ccgtgtttag taaattaaac aaagaaaatg aatactctcc
    27361 ctgaacattc atgtgacgtg ttgattattg gtagcggcgc agccggactt tcactggcgc
    27421 tacgcctggc tgaccagcat caggtcatcg ttctaagtaa aggcccggta acggaaggtt
    27481 caacatttta tgcccagggc ggtattgccg ccgtgtttga tgaaactgac agcattgact
    27541 cgcatgtgga agacacattg attgccgggg ctggtatttg cgatcgccat gcagttgaat
    27601 ttgtcgccag caatgctcgt tcctgtgtgc aatggttaat tgaccagggg gttttgtttg
    27661 atacccacgt tcaaccgaat ggcgaagaaa gctaccatct gacccgtgaa ggtggacata
    27721 gtcaccgtcg tattcttcat gccgccgacg ccaccggtag agaagtacaa tccacgctgg
    27781 tgagcaaggc gcagaaccat ccgaatattc gtgtgctgga gcgcagcaac gcagttgatc
    27841 tgattgtctc tgacaaaatt ggcctgccgg gcacgcgac
//
LOCUS       DAJVUN010000042        27571 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.042, whole genome shotgun sequence.
ACCESSION   DAJVUN010000042 DAJVUN010000000
VERSION     DAJVUN010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27571
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.042"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            154..585
                     /locus_tag="OQQ76_001446"
     CDS             154..585
                     /locus_tag="OQQ76_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967993.1"
                     /translation="MTMNLHTPTTAPKAAPATSVSPLEQSGSPKTKFPEIKTVKTAVV
                     KLISDIEGNLDQRLVYREAVEGLCQEAANRITQCMHSRSTGQTLRDLRELLSVTLDTI
                     IVVEFEGEQTRLNYGGRSAEDVIAMLKALHLEGRKAWLEVE"
     gene            complement(617..1144)
                     /locus_tag="OQQ76_001447"
     CDS             complement(617..1144)
                     /locus_tag="OQQ76_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HCS1967994.1"
                     /translation="MRKTTLLVLAAALCVPAFATAAPVLTAGFSPSDGRPALEIVLGA
                     INNARQSIDVAAYSFTSKPVATALAGANRRGVAVRVVADEKANSDRYTAVTYLINQGV
                     PVHLNGRYAIMHNKFMVIDGKNVQTGSFNYTASAVSRNAENVLLIEDAPQLAEAYQRE
                     FNRLWDEGIPLNALY"
     gene            complement(1137..1883)
                     /locus_tag="OQQ76_001448"
     CDS             complement(1137..1883)
                     /locus_tag="OQQ76_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein MobC"
                     /protein_id="HCS1967995.1"
                     /translation="MLISSYQERYARSTEKIRVLLNFLKEETYSDFQIIKLLFDFKSD
                     RPLYRLLEKVEKMGLIQKHVHESRASRISLWGITTDGLAVILTADDNIMPARFEPYRL
                     TGWSLDHHLDNQLVRLTLEKNGATGWINGDRSTFLSQYSVKHRPDGLISLPDGRLIAV
                     ETERRIKTKARYQSIMASHLLAISDKKWRYAFYVAPDEAKKRALKIIFDSIASVIVKN
                     QHVQLEAKHRDVFRFYTLDELKNLELDNYA"
     gene            complement(1898..3805)
                     /locus_tag="OQQ76_001449"
     CDS             complement(1898..3805)
                     /locus_tag="OQQ76_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraM recognition domain-containing protein"
                     /protein_id="HCS1967996.1"
                     /translation="MIFDKLNHLLSPIANAVLAFIAFLQAHQLALALLSGVMLPFIFS
                     AKHGGQEKPTFLQRILILLSMICFVFGSIAPVAVWFLQRIYGREDIASPPLLTWTMAL
                     LFTVAGFILHVVLRRLISPEFDKVKCGMVKKTSMERDRRTDVRRVKEILPVTTEYDPM
                     DYIDLNKGIFIGLSREGEPQYIPLKEWQTQHADIIGTTGAGKGVVTGILLYQSILADE
                     GVFVLDPKNDEWAPHLYKKACADAGKPFVLIDLNKQEYQMNLIDGITADHLEELFVAG
                     FSLAEKGEAADFYRIDDRKAARTAAQFVKDNPGATVRDIYNGDYVQGIGETIKAFHGK
                     TEELAMLNSINAPGGFALKEIFDKGGCCYIIGSMRNSKIITAQRMILVRLFQLAELRD
                     RVAGNIRPIAIFKDEVKYHLSKPALEGLGAARDKGVHILMAHQSIADLRDCPADLNGD
                     AVVGAVVENCKFKLVYKLQDPDTAEWIARMSGTILVDDESRKVTTTAVLTEKVDNERM
                     LRQAESYYIDSNMLQNLPKFVSYIFSQNALAFPSLISPLKVKKAPLELFTLPPVAVAT
                     VAEVKPVLDLDFDKTAPAVPAPDIIPVSATTTKKPSATPIPTPPVQPDEEWLMASQPA
                     PNDEIHSLLDL"
     gene            complement(4514..4906)
                     /locus_tag="OQQ76_001450"
     CDS             complement(4514..4906)
                     /locus_tag="OQQ76_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HCS1967997.1"
                     /translation="MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEH
                     IEQEKLRRQREEKRNELLALIESEGFSPTELVSTTPAKKSAKRKAKYQYFENGVHKKW
                     SGVGRVPVVIQQELDAGKPLESFLITTD"
     gene            complement(4903..7104)
                     /locus_tag="OQQ76_001451"
     CDS             complement(4903..7104)
                     /locus_tag="OQQ76_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001241818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase C-terminal repeat-containing
                     protein"
                     /protein_id="HCS1967998.1"
                     /translation="MRLWIAEKPAVASDIAKALGGNFTRHDGYAESATDIVSYCVGHV
                     LEMVPPETINPAYATWSLDTLPLKLYPVQLQPKASVAKQANTLVKLIRRPDIKMVVHC
                     GDPDDEGQLLVDEVLEFAGNTAPVKRALINDNTAPAVKKAINSLRDNSDFRGMYLKAL
                     MRSAGDAIFGFSMSRCYTLKARDKGYKGTISVGRVQTPVLGMIVRRWRDNQAHSEAFY
                     YQLAGQFISGTDVVCARWQTSEYAPVDDKKRLTDKAWGEGLARALAGKPASVLAAATD
                     RGKTTAAPLPFNLLRLQVYMNRRHKLTAQQTLDITQKLKDSKYITYNRSDCSYLSDEQ
                     FNDAPQVVAALKTLDVFNGLTTDTAQKSAAFDSKKVTAHTAIIPTTNMPDLSRLTDKE
                     KAVYLTIAQFYLAQFVAKKRYDESIAEIKCGDEMFKVSARKITDAGFTTFLNDAEEDD
                     EEDENSTSFEAISRLQTGATLTCREVVISEKKTKPLPLFTEATLLAALVRVADFVADP
                     RIKKLLKEKDKDKKDEHGGIGTPATRAAIIETLKTRDYITVEKGKFIPTAAGLALIDA
                     LPDSVTQPDMTAVWAEKQAAVETGEMTIERFIDGLYAEVSRLVESADIAISATEKHPV
                     KTALNRLAVKCPSCGSELVMTPKTCACTGCQFKIWLEVRGKKLTEKQAEKLIGKGKTD
                     VIKGFKSKKNDDTYSMIVTLKNAQTGELGFEYPPRDPLKGLNVSMPKELKL"
     gene            complement(7101..7409)
                     /locus_tag="OQQ76_001452"
     CDS             complement(7101..7409)
                     /locus_tag="OQQ76_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000212005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1967999.1"
                     /translation="MATKTGFIAPPWPHVRGDSVSAASLISRIEKEAHRGCGLHYEIY
                     QYRALCELHDVLTSLSVRDAETFMTVAADHGFSLSDNDFQESRMMYFETMDEIRRDQE
                     "
     gene            complement(7385..7720)
                     /locus_tag="OQQ76_001453"
     CDS             complement(7385..7720)
                     /locus_tag="OQQ76_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000610141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968000.1"
                     /translation="MINQTVSINNFSGLLKDEELPAGDLQTVLLVLSEISQKQDHFQA
                     NTSELVQLAAQHSPTFQALPAERQSFFRSVLSMPVFFYTVPLSDDEAAEWEKLNDKDA
                     LQWQQKPDL"
     gene            complement(7747..8064)
                     /locus_tag="OQQ76_001454"
     CDS             complement(7747..8064)
                     /locus_tag="OQQ76_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000683352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968001.1"
                     /translation="MKHTVITAALLCALTSPAFAADGQNADPNDPCAMVLCLAGKLDG
                     SSPAECDPMYKNFMSIKKKKKGSFLPDHTAAARQKKLSACPSADSAIVGKIISKFGRM
                     NGW"
     gene            complement(8155..8556)
                     /locus_tag="OQQ76_001455"
     CDS             complement(8155..8556)
                     /locus_tag="OQQ76_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968002.1"
                     /translation="MMLPKLTGLTAIVVLLAGCSSPPEPAAVDWSQPAQPVTTTRPVW
                     EPNRLIVASPVTEGHWSQVLTRFEPGGIYPAAQWYAVAHASRAVVNAPDGQRFFAAKT
                     WLREGGYKGVVEFRPRSGCLTCDTSEIVFYR"
     gene            complement(8543..9592)
                     /gene="virB11"
                     /locus_tag="OQQ76_001456"
     CDS             complement(8543..9592)
                     /gene="virB11"
                     /locus_tag="OQQ76_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000342114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HCS1968003.1"
                     /translation="MDDKLTDTPSEGNVALSHLRDLLFGDYLSREGLTEIAINRPGEL
                     HTKINGAWEMHASPVTLRQCSSFARALAVWNNDTIDETSPILSATLPTGERCQIVVPP
                     ACERNTISITLRKPDYFQRTHQSYIDAGFYDRVQGTEKVESKDGELSRIYLSGNIPLF
                     MEKCVEYGKTLFVVGETGSGKTTYMKMLLHYIPETLRLITIEDNPELKFYSQKNYVHL
                     FYPADAGEGAIVTSDRLVRAIYRMNPDRPLLAEVRGREAWDALKLIESGHEGFMSSLH
                     AGSPRECISGLIDRCYEHPACRGMPVDVLLRKVLHCVDVIVSVDVHGNVRRMSDVYFK
                     PLHMQAMKESFNDAA"
     gene            complement(9596..10792)
                     /locus_tag="OQQ76_001457"
     CDS             complement(9596..10792)
                     /locus_tag="OQQ76_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000980841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HCS1968004.1"
                     /translation="MMNEQEDIKTAAELEAEARERARAEIDGDKPAAGAVPPGQPQVV
                     QHAKRRSRRSLVLAAISLVLLVIIATGGDYLMAKLKGDGSGKSASHEPESHATSPARE
                     RNNLGRDLNPLGQLADTTGQEKTTPTDTAAPPQASPPPLTFDKVSALADSAPTTASSA
                     PKSTSSSNVSPAGSASAPGSATPAGQSQDNGLARITGVKRLGLDPDLYIPADRHIPCA
                     MMQRFVSDVGGRFNCLISEDIYSASNAVRLIPAGTEARGLYRTGTLKNGQGRLFLAIT
                     ELRTPEPGRLVIPMVDSQAVGALGENGVAGWIDNHWLERIGNTLLLGTVQDFAAAASG
                     SSPGKDRNTDYTENTRAATAEMAKTLLENSINIPPTMYLNQGDVIGLVTGADIDFSDV
                     YRLRMR"
     gene            complement(10789..11682)
                     /gene="virB9"
                     /locus_tag="OQQ76_001458"
     CDS             complement(10789..11682)
                     /gene="virB9"
                     /locus_tag="OQQ76_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001045307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HCS1968005.1"
                     /translation="MNKVLMCALLLTAASAWGAATPRGSAYDSRMQNIPYNSQNTTVI
                     NTRAGYITTLVFDADEEVITATAGFPQGWTITPDRNRVGISPAPVKQPVTDADGKTVQ
                     KIFTPTQQDWQTNLFVTTTKRDYSLMLNVIDNDREAGNLAFVVRFSYPDDTRRQNDAA
                     RLARQQELQAAQEKERIQFALKKSTAPRNWNYTRRVAAGSESITPDFAYDDGRFTYLG
                     FSPQKLIPSPTVIVGGSEQVITPTFSTEGNYRVMVLRSLSPRFVLRYGSQVVGIENGS
                     YGKVTVANGSTVSPDVKLESK"
     gene            complement(11675..12361)
                     /locus_tag="OQQ76_001459"
     CDS             complement(11675..12361)
                     /locus_tag="OQQ76_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001293055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1968006.1"
                     /translation="MSELTAKALSDSRSFENAILERDMRMKKAGWIVAALAGLLLVFA
                     LAALILLLPLKTTTVELYTLDRQTGRIERVTTVGEDKLDTSEVLNLSQTASYVKRREG
                     YNYFALQQDYRETQMFNSDEVNKEYLDWFNSPDAPDAVFQQAAYVVTVEVLSNVPSEG
                     TGSSMVEMLRIKRTIRKVKDNTETYDYWTVRMTYRYFPQKKMTASEREVNPFGFIVTS
                     YQRFKEKSDE"
     gene            complement(12354..12494)
                     /locus_tag="OQQ76_001460"
     CDS             complement(12354..12494)
                     /locus_tag="OQQ76_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000873539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968007.1"
                     /translation="MKYGITLLMLCLLAGCAQRNTQLPPVSGNPEPVNSPAIIQELTP
                     HV"
     gene            complement(12571..13578)
                     /locus_tag="OQQ76_001461"
     CDS             complement(12571..13578)
                     /locus_tag="OQQ76_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1968008.1"
                     /translation="MSGIFVGLNSHIMEGFDSVLTSVAADTGGWMAHLFSIAVLSLYI
                     TWRAYQTMAGKLVRPFEEIVWDVSRMLIIMIFVTNAGGYLDLVSDAITGLRDGFSGDA
                     SIWARLDTVWEKAQALGEKLYSYDDSTYVALKGTLAQFLVWAGVMLLVGITAIINLIA
                     ELVMLLMLATAPIFIYCLMWSWFRDMFSNWLRIILGCILTSLFSGIALTVVMDYLDYI
                     LAGATKASDANYLTLAVQVFLGTAGAAAVMVLTYKLAEALAGASAQGAAQALAASGVG
                     SARQSASSAAGAVGDKASQNLNSTGSATASSASTASRATGDARSRSRAAVQRMQERYQ
                     R"
     gene            complement(13596..13880)
                     /locus_tag="OQQ76_001462"
     CDS             complement(13596..13880)
                     /locus_tag="OQQ76_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HCS1968009.1"
                     /translation="MKLKTLTFIVLASVAALTGCEDKTSVDWYMAHHDDMLAKYRECI
                     FNHNFVPTDCQNARSALHREKAKPDVAEGYKQILKDLDKARVQEPIADLN"
     gene            complement(13892..14608)
                     /locus_tag="OQQ76_001463"
     CDS             complement(13892..14608)
                     /locus_tag="OQQ76_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000770034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HCS1968010.1"
                     /translation="MKLKTTLTALTVALCLFHVPAQAGIPVFDEVANASNIQQWAEKL
                     QQWQQTVQHYQSQMNAYKQQLATATGIRDVQAFLNQAKNLTADIKNLKNRGISLNDLL
                     TGSGGSYAGELNRLYDKYKLFDNCPENASEAYRDSCKQMLLNQAVSVEDTSDIQEKIS
                     DTLSDISNLASRIENAKDSKESQDLANVVSARSIQLNALTTQWEMSVKQSEMRNQLLA
                     EQRRKAQAEQMRTAPIADLN"
     gene            complement(14627..17377)
                     /locus_tag="OQQ76_001464"
     CDS             complement(14627..17377)
                     /locus_tag="OQQ76_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000153996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HCS1968011.1"
                     /translation="MTILNKALTRPAALWGVPLVPLLFTLCILTLAAVWSRFYWLLLL
                     LIPAFIELRRLAKEDIHFFDLKLLAFKTRGNRAATRHFGTKALVANQYDAIDVTEFIK
                     HMRLNESIPLSRYLPWSSHLHEQVVKNKKGDFVSTWEIGGIIFECEDEHYLATLDMQL
                     NNVIRSFEGLPVTFYTHLVSDEFTDTLECESGIPFSDEIARLFYASREGKPFYQRRLF
                     FTVCFNPHTGIERATMKQKSLGERKTLLDNALQVMQEHRQAIGTALSRYAARPLGTYE
                     ENGHVFSSQLAFYNFLITGRWQKVRVTRTPFYDVLGGTDIFPSTDIGQVSHTDGQSYF
                     RGLEIKDYSTETITGLYDSLLYARCRYVFTQSYTCMGKDEARGCIRTIEKRLKSAEDD
                     AISQQEDLKVARDMLQSGIISFGKYHQTLIVSAPTSEQVIRDTNTLADTLKDLGFIMT
                     LSRESLSAAYLAQLPGVYHLRPRLVPVSSLNYAEMVSFHNFHPHKRDGNAWGEAIAVV
                     PTPSGGCQYVNLHNSQADVDEFSEKPPGNTMLLGSTGTGKSTLLMMFQHLMQKYRRPE
                     SFAPGATKKRFTSVVFDKDRSAEMSIRLQGGSYFRFRSGEKTGLNPFALAPTKRNRNF
                     LKKLMRMMCTRDGKPLDPRDEERLSEAVDTIMLDYPPELRRNGITRMLEVLHEAPTKD
                     ARMNGLRIRLQQWAQGGEFGWVFDNDVDTFDIDNIDNFGIDGTEFLNDKDVRSPLTFY
                     LLYRVTSLLDGRRLVIFMDEFWKWLQDPEFSKFALDMLKVIRKLNGIFFPATQSPEEM
                     CKHEISAAIIEQCSTRIFMANQQAKEYDYVDMLRVPKAVYDIVTTLDPYARQMVIMKS
                     PLRRGDVRPYIAQITLDLSGLGRYTKLLSASADNLKIFDEIWQEGMKPEDWKDEMLRR
                     AV"
     gene            complement(17387..17686)
                     /locus_tag="OQQ76_001465"
     CDS             complement(17387..17686)
                     /locus_tag="OQQ76_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HCS1968012.1"
                     /translation="MTLRTIKTAATRLIAAFSALSAVPAMAASADQAFQKGSDAINWV
                     FLGLTGMSVVTISCAVAFIAYKMLVDGKAWHDLQRVFWAGVLLAGASGFGAYFAA"
     gene            complement(17697..18359)
                     /locus_tag="OQQ76_001466"
     CDS             complement(17697..18359)
                     /locus_tag="OQQ76_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HCS1968013.1"
                     /translation="MLTTAALFQLAMQCAPAVHPDTIHDITRTESGLNPYAIAEIVPV
                     KGGRSRVISHLPSSKDEALKIVEAIKQKKHRYSVGLMQITSTNFPQFGVSAESMFNPC
                     DNMTVAAKIITDCYQRGGTLQRALSCYYSGNFETGQRPESAFGNTSYVQRIGYVVPST
                     RAEQQTASPSSGEAPAVPSDNTVYPDSVIRGVIPAPDTTPTSIAAYPPHVVRGGLAVS
                     SD"
     gene            complement(18362..18577)
                     /locus_tag="OQQ76_001467"
     CDS             complement(18362..18577)
                     /locus_tag="OQQ76_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968014.1"
                     /translation="MPDITPAPASLLEAVFTPMTEYTHNVYSVKGDRLAMTLTKIGVA
                     QANSQGDIQLFINPDCATGKVLLYRKD"
     gene            complement(18570..18878)
                     /locus_tag="OQQ76_001468"
     CDS             complement(18570..18878)
                     /locus_tag="OQQ76_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001776105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968015.1"
                     /translation="MSMQTVRRKALRQNPYSTLGKPPLRSSRDRITRAINGTWSLREL
                     PDNVRELLIERAALRAEITTLTVKAQGLKKSDVSVLIADRLRRIDAITSLLENRKCNA
                     "
     gene            19192..20106
                     /locus_tag="OQQ76_001469"
     CDS             19192..20106
                     /locus_tag="OQQ76_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000891983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HCS1968016.1"
                     /translation="MLEMFEKIEKKYWQDKIKKISKFRVIKMQDLDDAKVIEVLAKVL
                     TKKGISKVKHNSYISKVLQITTSAGYKKLNGATKWEVQQLIKVVQSVGMDMIEFFRIY
                     YEDNKEIQDAIWNDGRSEHSCKVCLYPEGSEVNTEYSALKVADQWNIFPTNDLKDELL
                     YESKRSIESIVINPKVISSTKYRIALLDDDANITESLKEILSNDYYQVDTYDNLKKLT
                     QAVATNPYDAYVLDWIIGDETSFKLVKAIRSSKNKNAMIIVLTGQLSGIKDDEIVKSI
                     HDYDIVGPYEKPIKSGIIKSNIEKYFAR"
     gene            20110..21093
                     /locus_tag="OQQ76_001470"
     CDS             20110..21093
                     /locus_tag="OQQ76_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968017.1"
                     /translation="MRNLLEYSGSLISNDSLIVAPYDCQKLSYENILPLNNSLIKNWN
                     IQKFSSDYSEIEHLNVINGMGVTLGDSIVGISVLSAIKKKNPKIKIKLIRPETAPSYV
                     EELYELASSVIDELHYMPFHIQKLPCTALNIDVGNQLYSPDFHIMEMHDYFIQGLGVK
                     LDDVNHNELSNKWLGNIDLGAPVFENYTLFAPIASTKIRSIPSKFYYDIVDMLSRREG
                     KTVLGFVDVNHKNYINISKYSPHTKDFIALIKYASNVYTCDSSALHIAAGFGVPTECV
                     FNTIPPELRTKYYSKCKSIYVGNKRLEKIQSSEDFQLVKMVENNYREYLYG"
     gene            21086..21574
                     /locus_tag="OQQ76_001471"
     CDS             21086..21574
                     /locus_tag="OQQ76_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000238872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HCS1968018.1"
                     /translation="MVKIISFLSLMLLSISAYSNIGDIVIDGSIANANSDKGYVITEK
                     QFDSFPRDTIVTTTPWTPTGKKVKFKGVDLSYVLKLAGANGAKLKFHALNDYEIIVDM
                     NDVEKYNILLATEMDGKRLQIRDFGPYFLVYPLDEHYIELNTPHYLARFIWQIDKITV
                     LK"
     gene            21571..23289
                     /locus_tag="OQQ76_001472"
     CDS             21571..23289
                     /locus_tag="OQQ76_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017694276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HCS1968019.1"
                     /translation="MKKNFFIILVALLLLIAFTVSSVVKYTSLLSEKNLYTVAGTQEN
                     YGFSVAKFIIQLNELYTLINSDNTIDDVRLKFDILYSRLNVIYVKSEATAPLYKQQGY
                     EETIDSINKKLEDIDGLLSHNHPDYKKISTIIADIKPLTKTVTNLADMAEIAQRNDAL
                     KDFRSKRQQLWTLLFITGGLISLLLFVLFIYISKINRLLLSERAAFASKNAFLGMVGH
                     ELRTSLQAIVSIIDVVTNNLSGGIKSGQIERLETAVSKMERQLNDLAEFAKIDNGSVE
                     IKNTYNSLQAIVTNAVQDCIAIYEKKDVTVKIKNNNDAVIFTDALRLNQVIENLTSNA
                     IKYTERGEVNVDYFIEKGKVLNIVISDTGKGIPKDKLKFIFKPFTRVVDSKSTVPGFG
                     MGLAIVAGIIRLLKGTIHISSEVNVGTTVTVRIPIKLGDSSLATAEVSASAPGDVFGV
                     LSLLVIDDNEMACSSLSSLLTNAGYIVEATTSPERALEKLLRKPYDVVLSDLQMPGMT
                     GDELYATVSSSQNPNRSTPFIFISAYSDAHSIGQAPLLTKPVRLKDINLKIHEVMSNQ
                     GRVKSE"
     gene            complement(24148..24505)
                     /locus_tag="OQQ76_001473"
                     /pseudo
     CDS             complement(24148..24505)
                     /locus_tag="OQQ76_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            24697..25674
                     /locus_tag="OQQ76_001474"
     CDS             24697..25674
                     /locus_tag="OQQ76_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000600827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1968020.1"
                     /translation="MILIPDDEPELSLPAASEEFLPALSGENAPVSPARAYLLSLNSH
                     RSRQTMASFLNIVAVMLGAASLESCSWGSLRRHHVMAVTELLRDTGRATATVNTYLSA
                     LKGVAKEAWMLRLMDVESFQHIRAVRNLRGSRLPSGRALPQGEIRALFAVCEADRSCL
                     GARDAAMLAVILGCGLRRSEVVSLDLRDVVTQDRALRVLGKGNKERLAYVPAGAWQRL
                     QIWIDEIRGETPGPLFTRIRRFGDVTLNRLTDQAVYHILQVRQGQAGITKCSPHDLRR
                     TFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDRLNLI"
     gene            complement(25722..25985)
                     /locus_tag="OQQ76_001475"
     CDS             complement(25722..25985)
                     /locus_tag="OQQ76_001475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968021.1"
                     /translation="MLPEQHAAEARYPIPVEDFHFSIFTAVNNQTVMTSSAEIVLVIE
                     GTATLSHASGESLLLHVGLSAFIPASIGRWLLTTTGKVCRVSC"
     gene            complement(26020..>27571)
                     /locus_tag="OQQ76_001476"
     CDS             complement(26020..>27571)
                     /locus_tag="OQQ76_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Tn3-like element TnAs1 family transposase"
                     /protein_id="HCS1968022.1"
                     /translation="DIWVKGSRQFRDFDDYLLPAEKFAALKREQALPLAINPNSDQYL
                     EERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLP
                     RIKITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPG
                     LTYAKLSWLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRG
                     ESTGHVNPKYGSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIE
                     EHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQAYPTLRPLIGGTLNI
                     KHVRAHWDDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILD
                     WLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAI
                     VLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFR
                     PLRMPGKP"
BASE COUNT         6126 a         7284 c         7664 g         6497 t
ORIGIN      
        1 cctgcgtatc agcttccggt aatcgtcccc cgtcacaacc tggacagcaa gggtaaatgg
       61 cacgctgcgc gcccttgctg accagaacga ctccgggcag gccgaaccgt caggcgatac
      121 gaagacgaaa ttcacactga cggagaaacg accatgacga tgaacctgca caccccgaca
      181 accgccccta aagctgcacc ggcgaccagc gtatccccgc tggagcagtc aggctcccca
      241 aaaacgaaat ttcctgaaat caaaaccgtc aaaacggcgg tggttaaact gatcagcgac
      301 atcgagggca acctcgatca gcgtctggta tatcgcgagg ccgtagaggg attgtgccag
      361 gaggcggcca accggataac ccagtgcatg cattcacgca gtacagggca gacgctacgt
      421 gatctccgcg agctgctgtc ggtgacgctg gacaccatta tcgtggtgga gtttgaaggg
      481 gagcagaccc gtctcaacta tggcggacgt tcagcagaag acgtgatcgc catgctgaaa
      541 gcgctgcatc ttgaaggacg caaagcctgg ctggaagtgg agtaaaaaaa aagccccgtc
      601 cgcagacggg gctgattcag tacagggcat tcagcgggat gccctcatcc cacaggcggt
      661 taaattctcg ctggtacgcc tccgccagct gcggcgcatc ctcgatcagc agcacgtttt
      721 ccgcgttgcg cgaaacggcg cttgccgtgt agttaaacga cccggtctgg acgtttttgc
      781 cgtcgatcac cataaacttg ttgtgcatga tggcgtaacg gccgttaagg tgcaccggca
      841 cgccctggtt tatcagatac gtcacggcgg tgtagcggtc gctgttcgcc ttttcgtcgg
      901 ccaccacgcg cacggccacg ccgcgccggt tagcaccggc gagcgccgtc gcgaccggct
      961 tactggtgaa gctgtaggcc gcgacgtcaa tgctctgcct ggcgttgttt atggcgccga
     1021 gcacgatttc aagagcaggg cgcccgtcag acggcgaaaa acccgccgtc aggacgggcg
     1081 cggcggtggc gaacgcgggc acgcagaggg cggcggccag caccagaagg gtggttttac
     1141 gcatagttgt ccagctccag gtttttcagt tcatcgaggg tgtaaaagcg gaaaacgtcg
     1201 cggtgttttg cctccagttg cacatgctgg tttttcacga tcacgctggc gatgctgtcg
     1261 aaaataatct tcagggcgcg ctttttcgcc tcgtccgggg cgacgtaaaa cgcgtaccgc
     1321 cattttttat cgctgatagc cagcaggtgg ctcgccatga tggactgata gcgcgccttt
     1381 gttttgatac gtcgttcggt ttcaacggcg atcagcctgc cgtccggcag gctgataagc
     1441 ccgtcgggac ggtgtttgac gctgtactga ctgaggaacg ttgaacggtc gccgttaatc
     1501 caccctgtcg cgccgttctt ctccagcgta aggcgcacta gctggttatc aaggtgatgg
     1561 tcgagtgacc agccggtcag gcggtagggt tcaaagcggg cgggcattat gttgtcgtcc
     1621 gccgtgagga taacggccag cccgtcggtg gtaatgcccc acagggatat tctcgacgcg
     1681 cgggattcat gcacgtgctt ctgaatcagc cccattttct ccaccttctc caacaaccgg
     1741 tagagagggc ggtcagattt aaaatcaaaa agcagcttta tgatttgaaa atcgctgtag
     1801 gtttcctcct tgagaaaatt cagcagtacg cgaatttttt cagtgctgcg tgcataacgt
     1861 tcctgatacg acgaaataag catagaaact ccttatttta taaatccagc aacgaatgta
     1921 tttcgtcatt tggagcgggc tgtgatgcca tcagccactc ctcgtcaggt tgcaccggcg
     1981 gagtgggtat tggcgttgct gagggttttt tggtggttgt tgcgctgacc ggaataatgt
     2041 caggtgccgg aactgccgga gccgttttat caaaatccag atccagcacc ggtttaactt
     2101 ctgccaccgt agcgactgcg accggcggca gggtaaacag ctccagtggg gcttttttaa
     2161 ccttgagcgg tgagattaac gacgggaacg cgagcgcgtt ctggctgaag atatagctga
     2221 cgaacttcgg caggttctgg agcatattgc tgtcgatgta atagctttcc gcctgccgaa
     2281 gcatgcgctc gttatcgact ttttctgtca gcaccgccgt ggtggtgact ttccggcttt
     2341 catcatcgac taaaatcgtg cccgacatgc gcgcaatcca ttcggcggtg tctggatcct
     2401 gaagtttata taccagctta aacttgcagt tttccacaac cgccccaacc acggcgtcgc
     2461 cgtttaaatc cgccggacag tcgcgcaggt cggcaattga ctggtgcgcc attaatatat
     2521 ggacgccttt atcgcgtgcc gcgcctaacc cttcgagcgc cggtttggac aggtgatatt
     2581 tcacctcgtc cttaaagatg gcgatggggc ggatattccc cgcgacgcgg tcgcgcaatt
     2641 ccgcgagctg gaacaggcga actaaaatca tgcgctgcgc ggtaatgatt ttagagttac
     2701 gcatcgaacc gatgatatag cagcagccgc ccttgtcgaa aatctccttc agcgcaaaac
     2761 cgcctggcgc gttaatgctg ttgagcattg ccagctcctc ggttttaccg tgaaaggctt
     2821 taatcgtctc gccaatgccc tgaacataat cgccgttata aatatcccgc acggttgcgc
     2881 ccggattatc cttcacgaac tgcgccgccg ttctcgccgc cttgcggtcg tcgatacggt
     2941 aaaaatccgc cgcctcgcct ttttccgcca gactgaaacc ggccacgaat aattcctcca
     3001 gatggtcggc ggtgataccg tcgataaggt tcatctggta ttcctgttta ttcaggtcga
     3061 taagcacaaa gggttttccg gcgtccgcgc acgctttttt atacaggtgc ggtgcccact
     3121 cgtcgttttt ggggtcgaga acaaaaacgc cctcgtcggc gaggatgctc tgataaagca
     3181 gaataccggt tacgacgcct ttaccggcac cagtggtgcc gataatgtcg gcgtgctggg
     3241 tctgccattc ttttaacgga atatattgcg gctcaccctc gcggctcagc ccgataaaaa
     3301 tccccttatt cagatcgatg taatccatcg gatcgtattc tgtggtgacg ggtaaaattt
     3361 cttttacccg gcgaacgtcg gttctgcggt cgcgctccat gctggttttt ttcaccatgc
     3421 cgcatttgac cttatcaaat tcaggcgaga tcaaacgccg taaaaccacg tgcagaataa
     3481 aaccggcgac ggtaaacagt agcgccattg tccaggtaag cagcggcgga ctggcgatat
     3541 cttcccggcc ataaatgcgc tgtaaaaacc agacggccac tggcgctatc gagccgaaaa
     3601 caaaacagat catggaaagc agaattaaga tcctttgcag aaacgtcggc ttttcctgac
     3661 cgccgtgttt cgcagaaaat ataaaaggca gcatgacgcc ggacagcagc gctaacgcca
     3721 gttgatgcgc ctgcaaaaag gcgataaagg ccaggacggc atttgctatc ggcgacagca
     3781 aatgattcag tttgtcgaat atcacgatat tctccttcac ttaaattcgg tcagcaccat
     3841 cggtcagtca gaacggtcac aggttgtgat cgttctgact gaccgattcc atgctgcaaa
     3901 agaagtggcc gctaagcggc catgatcgca ggaggtacac tcccgcgatc taacggcgtg
     3961 cggcattacg cgcgggctgg acgcccttac tgcatgtcgc atgggggtaa tgtcctggct
     4021 gaacgcccgg ccaaaacccc caaggtcaaa agaggccaca ccgtcgcgcg ctacgcgcga
     4081 ccacccccta aaagacgcct gttttagccc ttttcttcgc cttgttcgtt cctcacaaga
     4141 tgaattaaag ggaaactagg ctttttaggg ggtggtcgcg ccacgctacc ggcttttggc
     4201 cggagactta ggcacgacgg tgtggggggc aagcccccca aataaaccga cgcgtgggcg
     4261 cgtctttttg ctcgctgggg cggcaaaatt tattcggccc cccccggctt ttttcggctc
     4321 acttggggtg agcgctcaaa aagtggaatc ggcgacgcaa attagcaatt tcttcgaaat
     4381 tgaatttact cgcctcctgc cacttcgcag actcaggcgg cctgtcgatt agcaattttt
     4441 tcaaaattga atcgccatgc tcgccagtct tcgaagcccg aaaagccagg tcaaaaccga
     4501 ccctgtgccg ttgttagtcg gtggtaataa ggaaggattc aagaggtttt ccggcgtcaa
     4561 gttcttgctg aattacaacc ggcacgcgtc cgacgcctga ccatttttta tgcacgccgt
     4621 tttcaaaata ctgatattta gctttgcgtt ttgccgactt tttggcggga gttgtactaa
     4681 ccagctctgt cggtgaaaag ccctccgatt caatcagcgc cagcaattca ttgcgctttt
     4741 cttcccgctg tcggcgtagc ttttcctgct cgatatgctc tgcgcgtttt tcatcaagcg
     4801 ctgctgaaat acgtgcactc agcatctcca gaaaggcaaa atcactttca cgtaaaaact
     4861 ttttcagcgc gcgctctgag gttaattcgt cctggatacg gttcataatt tcagctcctt
     4921 cggcatagat acgttcaatc ctttcagcgg atcgcgtggt ggatattcaa aaccgagttc
     4981 cccggtttgc gcgtttttca gcgtgacgat catcgaatag gtgtcgtcgt ttttcttcga
     5041 tttaaaacct ttaataacgt cggttttgcc cttgccgatt aacttctcgg cctgtttttc
     5101 cgtcagcttt ttgccgcgca cttccagcca tattttgaac tgacagcccg tacaggcgca
     5161 ggttttcggc gtcataacca gctcagaacc gcacgacgga catttaaccg cgaggcggtt
     5221 aagcgccgtt ttaacgggat gtttttccgt cgcgctgatg gcaatatcgg cgctctcaac
     5281 caggcgggaa acttccgcgt aaagaccatc aataaagcgc tcgatggtca tttcgccggt
     5341 ttcaaccgcc gcctgttttt cagcccatac ggcggtcata tccggctgcg tcaccgagtc
     5401 gggcagggca tcaattaacg ccagcccggc ggcagttggg ataaatttgc ccttttccac
     5461 ggtgatgtaa tcgcgggttt tcagcgtctc aataatagcc gcgcgggtcg ccggtgtgcc
     5521 gatgccgccg tgttcatctt ttttgtcttt atccttctcc ttgagcaatt ttttaatgcg
     5581 cggatcggcg acaaaatcgg ccacgcgaac gagggcagcg agcagggtcg cctcggtaaa
     5641 cagcggcagc ggtttagttt ttttctccga aatcaccacc tcgcggcagg ttaatgtcgc
     5701 cccggtttgc aggcggctga tggcctcaaa cgaggtgctg ttttcgtcct cctcgtcgtc
     5761 ttcttccgcg tcgttcagga acgtcgtaaa acccgcatcg gtgattttac gcgccgagac
     5821 tttaaacatc tcgtcaccgc atttaatctc cgcgatcgac tcgtcatagc gctttttcgc
     5881 cacgaactgc gcgagataaa actgcgcgat ggtgagataa accgcctttt ccttgtcggt
     5941 aaggcggctt aaatccggca tgttcgtcgt cgggataatg gcggtgtggg cggtgacttt
     6001 tttactgtca aacgccgcac ttttttgcgc cgtgtcggtg gtaaggccgt taaaaacgtc
     6061 gagcgttttt aaggccgcca ccacctgtgg cgcgtcgttg aattgttcat cggacagata
     6121 agaacagtca gagcggttgt aggtaatgta tttactgtcc ttgagcttct gcgtgatatc
     6181 gagcgtctgc tgcgcggtca gtttgtgcct gcggttcata tacacctgga ggcgcagcag
     6241 gttaaacggc agcggtgcgg ccgtggtttt tccccggtcg gtggcggccg cgagcacgct
     6301 ggccggtttt ccggccagag ccctcgcgag tccttccccc caggccttat ccgtcagccg
     6361 ctttttatcg tccaccggcg cgtattcgga cgtctgccag cgggcgcaga caacgtccgt
     6421 accgctgata aactgccctg cgagctggta gtaaaacgcc tcgctgtgcg cctgattgtc
     6481 gcgccaccgg cgcacaatca ttcccagcac cggcgtctgg acgcggccaa ccgaaatcgt
     6541 gcccttatag cccttatcgc gggctttgag ggtgtaacag cggctcatac tgaagccaaa
     6601 aatcgcgtct cctgcgctgc gcatcagggc tttcaggtac atcccacgaa aatcgctgtt
     6661 atcgcgcagg gagttgatgg cttttttcac cgctggcgcg gtgttgtcgt taataagcgc
     6721 ccgtttcacc ggcgcggtgt ttccggcgaa ctccagcacc tcgtcaacca ggagctgccc
     6781 ctcgtcgtcc gggtcgccgc agtggacaac cattttgata tccgggcgcc gaatcagctt
     6841 caccagggta ttagcctgct ttgccacgct cgcttttggc tgaagctgta ccgggtacag
     6901 cttcagcggc agggtgtcga gcgaccaggt ggcgtaggcc gggttgatcg tctccggggg
     6961 caccatttcc agcacgtggc cgacgcagta gctcacgata tcggtcgccg attcggcata
     7021 gccgtcgtgc cgggtgaagt tgccgcccag cgctttcgcg atatcgctcg cgactgcggg
     7081 tttttctgca atccacagtc tcattcttga tctctcctga tttcatccat cgtttcgaag
     7141 tacatcattc gactttcctg aaagtcgtta tcagacagac taaagccatg atccgccgct
     7201 actgtcatga acgtctcagc atcacggacg ctgagactgg tcagaacatc gtgcaattcg
     7261 cacagggcgc gatattggta gatttcgtaa tgcaggccgc agccgcgatg cgcttctttc
     7321 tcgatgcgag aaatcaggct cgcggcacta acggaatcac cacgcacatg cggccacggc
     7381 ggggctataa atccggtttt tgttgccatt ggagtgcatc cttatcgttg agtttttccc
     7441 attccgccgc ctcgtcgtcg ctcagcggaa cggtgtaaaa gaagaccggc atactgagca
     7501 cggagcggaa gaacgactga cgttctgctg gtaatgcctg gaaggtcggc gagtgctgcg
     7561 cggcgagctg gacgagttcg gacgtgttgg cctgaaaatg atcctgtttc tggctgattt
     7621 ccgacaaaac gagcagcacc gtctgcaaat cacctgcagg aagctcctca tctttcagca
     7681 gcccggaaaa gttattaata gaaacggttt gattaatcac gtggtgtctc ctttacggct
     7741 gccgttttac caaccgttca tacggccaaa tttcgagatg atcttgccga caatggcgct
     7801 gtcagcggac gggcaggcgc tcagtttttt ctgccgcgct gcggcggtgt gatcgggtaa
     7861 aaacgacccc ttttttttct ttttgatgct catgaaattt ttgtacatcg ggtcacactc
     7921 ggcgggactg ctgccgtcga gctttccggc caggcacagc accatcgcgc acgggtcatt
     7981 cgggtcggca ttctggccat cggcggcgaa cgccggagaa gtaagggcgc acagcagcgc
     8041 cgccgtgatt acggtgtgtt tcatgatgat ttcctctgaa gggaagcagg gcgctaacgc
     8101 ccgttggttg ttcaacgtcg gtgacggtct gaaggactca gaccgtcacc gacgttatcg
     8161 gtagaagacg atttctgagg tgtcgcaggt caggcagccg gagcgggggc gaaactccac
     8221 cacacccttg tagccgccct cgcggagcca ggttttggcc gcaaagaagc gctggccgtc
     8281 cggggcattt actaccgcgc gcgaggcgtg cgcaaccgcg taccactgtg cggccgggta
     8341 aatcccgccg ggttcaaaac gcgtaagcac ctgcgaccag tgcccttccg tcaccggcga
     8401 ggccacgata agacggttgg gttcccatac cggccgggtg gtcgttaccg gctgcgccgg
     8461 ttgtgaccag tcaacggccg caggctccgg tggcgaagaa cagcccgcca ggaggacgac
     8521 gatcgccgtc aggccggtca gtttaggcag catcattgaa actctccttc atagcctgca
     8581 tgtgcagggg tttaaaatag acgtcgctca tgcggcgcac gttgccgtga acgtccacgc
     8641 tcacaatgac gtcgacgcag tgcagtacct tgcgcagcag cacgtcaacc ggcatgcccc
     8701 ggcacgccgg atgctcgtag cagcggtcaa tcagcccgga gatacactcg cgcgggctgc
     8761 ccgcgtgcag ggaggacata aacccctcgt gcccggactc aatcagcttg agtgcgtccc
     8821 acgcctcgcg gccacgcacc tcggcgagca gggggcggtc ggggttcata cggtaaatcg
     8881 cgcgcaccag gcgatcagag gtgactattg cgccctctcc ggcgtccgcc gggtagaaca
     8941 gatgaacgta gtttttctgg ctgtaaaact tcagctccgg gttgtcctcg atggtgataa
     9001 ggcgcagcgt ctcgggaatg tagtgcagca gcatcttcat gtaggtggtt ttcccagagc
     9061 ctgtttcccc caccacaaag agcgttttgc cgtactccac gcacttttcc ataaaaagcg
     9121 ggatattccc ggacaggtat atgcggctca gctccccgtc ttttgattcc accttttctg
     9181 taccctgcac ccggtcataa aacccggcat cgatatacga ctgatgggtg cgctggaagt
     9241 agtccggctt acgcagggtg attgagatgg tgttacgctc acaggccggg ggcaccacta
     9301 tctggcagcg ttctcctgta gggagcgtgg ccgagaggat aggcgacgtt tcatcaatgg
     9361 tgtcgttgtt ccacacggcc agcgccctgg caaaggacga gcactggcgc agcgtgaccg
     9421 gcgaggcgtg catttcccac gccccgttga tttttgtgtg cagctctccg gggcggttga
     9481 tggcaatttc cgtcagcccc tcccggctca ggtagtcccc gaacaacaga tcgcgcaggt
     9541 gtgacagcgc gacgttgccc tctgacgggg tatcagtcag tttatcgtcc atcgcttacc
     9601 tcatgcgcag tctgtagacg tctgaaaaat caatgtccgc ccccgtgacc aggccaatca
     9661 cgtcaccctg gttgaggtac atcgtcggcg ggatgttgat gctgttttcc aggagcgttt
     9721 ttgccatttc cgccgtggcc gcgcgggtgt tctccgtgta gtccgtgttg cgatccttgc
     9781 ccggcgacga gccggaggcc gcagcggcaa agtcctgtac cgtgccgagc aggagggtat
     9841 tacctatccg ctccagccag tgattgtcta tccagcccgc gacgccgttc tcgccaagcg
     9901 cccccacggc ctggctgtca accatcggaa taaccaggcg gccgggttcc ggcgtgcgca
     9961 gctcggtgat ggcgaggaac agacgcccct gcccgttttt cagcgtgccg gtgcggtaca
    10021 ggccgcgcgc ctcagtgcct gccgggataa ggcgcacggc gttgctggcg ctgtaaatgt
    10081 cctcgctgat aaggcagtta aagcgcccgc ccacgtccga tacaaagcgc tgcatcatcg
    10141 cgcaggggat atgccggtcg gccggaatgt acaaatccgg atcgaggccg agccgcttca
    10201 cgccggtaat gcgcgccagc ccgttatcct gcgactgccc ggcgggtgtt gcagagcctg
    10261 gcgcggacgc gctgcccgca ggtgatacgt tactgctgga cgtgcttttc ggggcgctgc
    10321 ttgcagtggt tggggcgctg tctgccaggg cgctgacctt gtcaaacgtc agggggggcg
    10381 gtgatgcctg cggcggcgcg gcggtatcag tcggagtagt cttctcctgg ccggttgtgt
    10441 ctgccagctg tcccagcggg ttcagatccc gtccgaggtt attgcgctcg cgggcggggg
    10501 aggtggcgtg cgattccggt tcatggctcg cgctttttcc gctgccgtca cccttcagtt
    10561 tcgccatcag gtaatccccg ccggtggcga taatgaccag taacaccagg ctgatggcgg
    10621 ccagcacgag cgagcggcgg ctgcggcgct tcgcgtgctg caccacctgt ggctgtccgg
    10681 gtggcaccgc gcctgcggcg ggtttatcgc cgtcaatctc tgcccgcgcc cgctcgcggg
    10741 cttccgcctc cagttcggcg gcggttttaa tgtcttcctg ttcgttcatc atttgctctc
    10801 cagtttcaca tccggtgaga cggtgctgcc gttcgccacg gtgactttcc cgtaactgcc
    10861 gttttcaatc cccacgacct ggctgccgta gcgcagcaca aagcgtggag aaagagagcg
    10921 cagtaccatc acccggtagt taccctcggt gctgaaggtc ggggtgatca cctgctcgct
    10981 gccgccgacg atgacggtcg gcgacgggat cagcttctgc ggtgaaaagc cgagataggt
    11041 aaaccggccg tcgtcatacg caaaatccgg ggtgatcgac tccgaacctg ccgccaccct
    11101 gcgggtgtag ttccagttgc gcggcgcagt ggatttcttc agggcaaact gaatgcgttc
    11161 tttctcctgc gcggcctgaa gctcctgctg acgggcgagg cgggctgcgt cgttctgcct
    11221 gcgggtatcg tcggggtagc tgaagcgcac cacaaaggcc agatttcccg cctcgcgatc
    11281 gttatcgatc acgttcagca tcaggctgta gtcgcgcttt gtggtggtca caaacaggtt
    11341 ggtctgccag tcctgctgcg tgggggtgaa aatcttctgg acggttttgc cgtccgcatc
    11401 cgttaccggc tgcttcaccg gcgcggggct aatccccacg cggttacggt cgggtgtgat
    11461 cgtccagccc tgcggaaaac cagcggtggc ggtgatcacc tcctcgtcgg cgtcaaaaac
    11521 cagcgtcgtg atgtaacccg cccgcgtgtt aatcactgtc gtgttctggc tgttgtaggg
    11581 gatgttctgc atgcggctgt cataggcgct gccgcgcggt gtcgccgccc cccatgctga
    11641 cgctgcggtc agcaggaggg cacacatcag taccttattc atcgcttttc tccttaaacc
    11701 gctggtaact ggtgacgatg aagccgaacg ggttcacctc gcgctcggag gccgtcattt
    11761 tcttctgcgg gaaatagcgg taggtcatgc gcaccgtcca gtaatcatac gtttcggtgt
    11821 tgtccttgac ctttcgaatg gtgcgcttga tgcgcagcat ctccaccatg ctggagccgg
    11881 tgccctctga cggtacgttg gagaggactt ccaccgtgac tacataggcc gcctgctgaa
    11941 acacagcgtc cggcgcgtcc gggctgttaa accagtcgag gtattccttg ttgacctcgt
    12001 cgctgttgaa catctgcgtc tctctgtagt cctgctgaag ggcgaaatag ttgtacccct
    12061 cgcggcgctt cacgtaggac gcagtctgcg agagattgag cacctcggag gtgtccagct
    12121 tgtcctcgcc gacggtggtg acgcgctcga tgcgcccggt ctgacggtcg agcgtgtaca
    12181 gctccacggt ggtggttttg agcggtagca gcaggataag ggcggcaagg gcgaagacga
    12241 gcagcagacc ggcgagcgcc gccacgatcc agcccgcctt tttcatgcgc atatcccgct
    12301 caagaatggc gttctcaaac gagcgcgagt cgctcagggc tttggcggta agttcagaca
    12361 tggggggtta actcctgaat aatggccggg gaattgaccg gctccgggtt gcccgacacg
    12421 ggcggaagtt gggtgtttcg ctgtgcgcag cctgcaagca ggcacagcat cagcagcgtg
    12481 atgccgtatt tcatggtgtt tttcctgtgg taaagacgtg acgaagccgc aggacgccgt
    12541 tgcggcgtcc cgcagttcag tcagactggg ttatctctgg tagcgttcct gcatccgctg
    12601 aacggcggcg cggctgcggc tgcgcgcatc gccggtggcg cgggaggccg tggaggcaga
    12661 cgaggccgtt gcgctgccgg tgctgttaag gttctgtgag gctttatccc ccaccgcacc
    12721 ggctgcggag gaggcggatt gacgggctga acctactccc gacgcggcaa gtgcctgagc
    12781 ggcaccctgt gcggatgcac cggcaagcgc ctcggccagc ttataggtca ggaccatcac
    12841 ggcggcggca cccgccgtgc cgaggaagac ctgaacggcc agagtcaggt agttggcatc
    12901 ggatgctttt gtggcgcccg ccaggatgta gtccaggtaa tccattacca ccgtcagggc
    12961 gatgccgctg aacagggatg taaggatgca gcccagaata attctgagcc agttgctgaa
    13021 catatcccgg aaccacgacc acatcaggca gtagataaag atcggggcgg tcgccagcat
    13081 cagcagcatc accagttcgg ctatcaggtt aatgatggcc gtgatgccta ccagtaacat
    13141 gacgcctgcc cagaccagaa actgcgccag agtgcctttt agagcgacat aggttgaatc
    13201 atcataagag taaagcttct ccccaagtgc ttgagccttt tcccagacgg tatccagccg
    13261 cgcccagatc gacgcgtcgc cgctgaatcc gtcccgcagg ccggtgatgg catccgaaac
    13321 cagatcgaga tagcctccgg cgttggtgac gaaaatcatg atgatgagca tccggctcac
    13381 gtcccacacg atctcctcga aggggcggac tagcttgcct gccatcgtct ggtaggcgcg
    13441 ccacgtgatg tacagcgaga gcaccgcgat ggagaacagg tgtgccatcc acccccccgt
    13501 atcggcggcc acgctggtga gcacgctgtc aaacccctcc atgatgtggc tgtttaatcc
    13561 gacgaatatt ccactcatgg tgcgttctcc tgtcgctaat tcaggtcagc aataggctct
    13621 tgcacgcgag ctttatcaag gtctttcagg atttgcttat atccttcggc aacatcaggt
    13681 ttagcttttt cacggtgaag ggcggagcgt gcattctggc aatcggtggg cacaaaatta
    13741 tgattaaaaa tgcactccct gtatttcgcc agcatgtcgt catggtgtgc catataccag
    13801 tctacggagg ttttatcctc gcagccagta agcgcggcca ctgaggccag aacaataaag
    13861 gtcagtgtct tcagtttcat ggggtcacct gttagttaag gtctgcgatt ggagctgtgc
    13921 gcatttgctc ggcctgcgcc tttcggcgtt gttcggcaag cagctggttg cgcatctcac
    13981 tttgtttgac cgacatttcc cattgagtgg tcagggcgtt cagctggata ctccgcgcgg
    14041 acactacgtt cgccagatcc tgcgattctt tactgtcctt cgcattctcg atgcgactgg
    14101 cgagattact aatatcgctc agcgtgtcgg aaattttttc ctggatgtca gaagtgtcct
    14161 cgacggacac cgcctgattg aggagcatct gtttgcagct atcccggtac gcctcgctgg
    14221 cgttctccgg gcagttgtcg aacagtttgt atttgtcata cagcctgttt agttccccag
    14281 cataagaccc gcctgagccg gttaacagat cgtttaagga aatccccctg tttttcagat
    14341 ttttaatgtc agccgtcagg ttttttgcct gattcaggaa tgcctggacg tcccgaatac
    14401 cggtggccgt tgccagctgt tgtttataag cgttcatctg cgactgataa tgttgaaccg
    14461 tctgctgcca ctgctggagc ttctccgccc actgctggat gttgctggcg ttggctactt
    14521 catcaaaaac gggaataccg gcctgagccg ggacgtgaaa gagacacaag gcgacggtca
    14581 gcgccgtcag ggtggttttc agtttcatgg tgttatcctt ttgtgattaa acggcacgtc
    14641 tcagcatttc gtctttccag tcttccggct tcataccctc ctgccagatc tcgtcaaaaa
    14701 ttttcaggtt gtccgcactg gcgctgagca gcttcgtgta gcgacctagc ccggagaggt
    14761 cgagggtgat ttgtgcgata tacgggcgca cgtcaccacg ccgcagcgga gatttcatga
    14821 tcaccatctg gcgggcgtag gggtcgaggg tggtcacgat gtcgtaaacc gctttcggca
    14881 cccgcagcat gtccacgtag tcgtactcct tcgcctgctg gttcgccatg aagatgcggg
    14941 tactacactg ctcgataatg gccgccgaga tctcgtgctt gcacatctcc tccggcgact
    15001 gcgtggccgg gaagaaaatg ccgttgagct ttcgaatgac cttcagcatg tcgagggcga
    15061 attttgaaaa ctccgggtcc tgaagccatt tccagaattc atccatgaaa atgaccaggc
    15121 ggcggccatc gaggaggctg gtcacgcggt agagcaggta gaaggtgagc gggctgcgca
    15181 cgtctttgtc gttcaggaac tccgtgccgt cgatgccgaa attatcaata ttgtcgatat
    15241 caaaggtgtc cacgtcatta tcaaacaccc agccaaactc cccgccctgc gcccactgct
    15301 ggagacggat gcgcagcccg ttcatccgtg cgtccttcgt cggggcttca tgcagcactt
    15361 ccagcatgcg ggtgatgccg ttgcgacgaa gctcaggcgg gtagtccagc atgatggtgt
    15421 ccactgcctc gctgaggcgt tcttcatcgc gcgggtcgag cggtttgccg tcccttgtgc
    15481 acatcattcg catcagcttc ttgaggaagt tgcggttacg tttcgttgga gcgagcgcaa
    15541 acgggttaag gccggtcttc tcgcctgaac ggaaacggaa gtacgagccg ccctggaggc
    15601 gtatcgacat ttccgccgaa cggtctttat caaagaccac cgaggtgaag cgctttttcg
    15661 tcgcccccgg cgcaaacgac tcaggacgcc ggtatttctg catcagatgc tggaacatca
    15721 tcagcagggt cgatttcccc gtcccggtac tgccgagcag catggtgtta cccggcggct
    15781 tctcgctgaa ctcgtcaaca tcggcctggc tgttgtgcag attcacgtac tgacatcccc
    15841 cggacggggt cggaacaacg gcaatcgcct ccccccaggc attcccgtcc cgcttgtgcg
    15901 ggtgaaagtt gtgaaacgac accatttcgg cgtagttgag gctgctcacc ggcaccagac
    15961 gcgggcgcag gtgatacaca cccggcaact gcgcgagata cgccgccgac agcgactcgc
    16021 gggacagggt catgatgaaa ccgagatcct tcagggtatc cgccagggtg ttggtgtccc
    16081 ggataacctg ctcgctggtt ggggcgctga caataagcgt ctggtgatat ttcccgaatg
    16141 aaataatgcc ggactgaagc atgtcgcggg cgaccttcag gtcttcctgc tgggagatcg
    16201 catcatcctc ggcagacttc aggcgtttct cgatggtgcg gatgcagccc cgcgcttcat
    16261 ccttacccat gcaggtatag gactgcgtga acacgtaccg gcagcgggca taaagaagcg
    16321 agtcatacag cccggtgatg gtttcagtgc tgtaatcctt gatttccagc ccgcgaaagt
    16381 agctctggcc gtcggtgtgg ctgacctggc caatgtcggt ggaagggaaa atatccgtgc
    16441 cgcccagcac gtcataaaac ggcgtgcggg tgacgcggac tttctgccac ctgccggtga
    16501 tcagaaagtt gtaaaacgcc agctgggagg agaacacgtg cccgttctcc tcataagtgc
    16561 caagcggccg cgccgcgtag cgtgacagcg ccgtgccaat cgcttgccgg tgctcctgca
    16621 tcacctgcag ggcattgtcg agcagggttt tacgttcgcc cagggacttc tgtttcatgg
    16681 tcgcccgctc aatgccggtg tgcggattga agcagacggt gaagaagagg cgacgctggt
    16741 agaaaggttt gccctcgcgg gaggcgtaaa acagacgcgc gatttcatct gaaaacggaa
    16801 tcccggattc acattcaagc gtgtcggtaa attcgtcgct caccagatgg gtatagaagg
    16861 taacgggtag cccctcaaag gagcggataa cgttgttgag ctgcatgtcc agggtggcga
    16921 ggtaatgttc atcctcgcat tcaaaaatga taccgccgat ctcccaggtg ctgacaaagt
    16981 cacctttttt gttcttcacc acctgctcgt gcaggtggga agaccagggg agatagcggg
    17041 acagcgggat actctcgttg agccgcatat gttttataaa ctccgtaacg tctatggcgt
    17101 cgtactggtt tgcgacaagc gcctttgtcc cgaaatgccg ggtcgccgcg cggttgccac
    17161 gcgttttaaa cgccagcaac ttcaggtcaa agaaatgaat gtcctctttt gccagccgtc
    17221 tcagctcgat aaaggcaggt atgagaagca ggagaagcca gtaaaaacgt gaccagacgg
    17281 ccgccagggt aaggatgcac agggtgaaca gcagggggac aagcgggacc ccccacagcg
    17341 ccgccggtcg ggtcagcgcc ttgttgagga tggtcatgct gcctccttag gcggcgaagt
    17401 aggcaccgaa cccggacgcc ccggcgagca ggacacccgc ccagaacacg cgctggagat
    17461 cgtgccaggc cttgccgtca acaagcatct tgtaggcgat aaaggccacc gcacagctga
    17521 tagtgacgac tgacatacca gttaggccga ggaagaccca gttaatggcg tcactgcctt
    17581 tctgaaatgc ctggtcagcg ctggccgcca ttgctggaac agcagacagg gcggaaaatg
    17641 cggcaatcag gcgggttgca gcggttttga tagtacgtaa agtcatgatc tcttccttaa
    17701 tcagaagaca cagcgaggcc gccgcgcacg acatgtggcg gataagcagc gatgctggtc
    17761 ggggtggtgt cgggtgccgg aattacgccg cgtatgacgc tatccgggta aacagtgttg
    17821 tcggacggga cggcaggcgc ttccccggat gagggagatg ctgtctgctg ttctgcccgc
    17881 gttgagggca caacgtagcc aatacgctgt acgtagcttg tgttgccgaa cgcgctttcc
    17941 gggcgctggc cggtttcaaa gttgcctgag taatagcagc tcagggcgcg ctgtaatgtt
    18001 cctcctcgtt gatagcagtc ggtgatgatt ttcgcggcaa cagtcatgtt gtcacagggg
    18061 ttaaacatgg attcggcgct tacgccgaac tgcgggaagt tggtgctggt tatctgcatc
    18121 agccctactg aataacggtg ctttttctgc tttatggcct ccacaatttt tagcgcctcg
    18181 tctttcgacg aaggcagatg agaaatcacg cggctcctgc cgccctttac cgggacaatc
    18241 tcagcgatgg catatggatt taagccggat tcggtgcggg tgatgtcgtg gatggtatcg
    18301 gggtgaacgg cgggagcaca ctgcattgcg agctgaaaca acgcggcagt ggttaacata
    18361 gtcagtcctt tctgtagagc agtaccttac cggtggcaca gtccgggttg ataaataact
    18421 gaatgtcgcc ctggctgtta gcttgggcaa caccgatttt tgtaagcgtc attgccagcc
    18481 gatcaccctt caccgaatac acgttgtgcg tgtactcggt catgggggtg aatacggctt
    18541 caagcagtga ggccggagca ggcgtgatgt caggcattac atttcctatt ttccagcagt
    18601 gaggtgattg catcgatacg tcgcagcctg tcggcaataa gtacggatac atcggatttt
    18661 ttgagtccct gcgctttcac agtcagggta gtgatttctg cccgcagggc tgcccgttca
    18721 attagcaatt ctcggacgtt atccggcagc tccctgagcg accaggtgcc attaatggca
    18781 cgcgtgatac ggtcacggga ggagcgtagc ggcggcttgc cgagagttga ataaggattc
    18841 tgacgcagcg ccttacggcg gacggtttgc atgctcatgg ctgtttctcc tgggtatgag
    18901 taagccaccc gcgtgcggtg cacagtggga gacagggaag gattaaacgg gaggcttaac
    18961 gatacagagg agtgagagtg ttacccatta caggcgcggc acgtcatctc tttacgcagt
    19021 cacagaaaac acctccttat cctgaccggg gaacgccgct gctaggttat taaagagcta
    19081 atgatttgat taatacaata gtgcttataa gttgggtatt caataaaatt ataacttata
    19141 gtatcgattt aagaatgatt ccaattttta ggactttttc agctgtgtaa aatgttggag
    19201 atgtttgaaa aaattgaaaa aaaatactgg caggataaaa tcaagaaaat ctccaaattc
    19261 agagtaataa aaatgcaaga tctcgatgat gcaaaagtga tagaggtact ggcgaaggta
    19321 ttgaccaaaa aaggtatttc caaggtaaag cacaatagtt acataagtaa ggtgctacag
    19381 atcactacat cagcgggcta taagaagttg aatggtgcga ccaagtggga ggttcagcaa
    19441 ctcataaaag tagtccaatc cgttggcatg gatatgattg agtttttccg tatttattat
    19501 gaggataata aagaaattca agatgcgatc tggaacgatg gccgcagtga acactcttgt
    19561 aaggtatgcc tctatcctga aggttcggaa gtaaacacag aatactcagc actgaaagta
    19621 gctgaccaat ggaacatttt tccgacaaat gatttaaaag atgaactgct ttatgaatca
    19681 aaacgaagca tagaaagtat tgtcataaat ccaaaggtaa ttagcagcac taagtatcga
    19741 attgcactac ttgatgacga tgctaatatc accgaaagct taaaagaaat cctttcgaac
    19801 gattattatc aagtagatac ttatgataac ttgaaaaaac ttactcaagc tgtcgcaaca
    19861 aatccgtatg acgcatatgt tttggactgg atcatcggtg atgaaacaag ctttaagttg
    19921 gttaaagcta taaggtcgtc aaaaaataaa aatgcaatga taatcgttct tacaggtcaa
    19981 ctatctggta taaaagatga tgaaattgta aagtcaattc atgattatga cattgtggga
    20041 ccatacgaaa agccgattaa atcaggcatc atcaaatcta acattgaaaa atatttcgcc
    20101 agatagatta tgagaaattt acttgaatat tccggtagct tgataagtaa cgatagtttg
    20161 atcgtagcac cttacgattg tcagaagcta agctatgaaa atattttacc attaaacaat
    20221 agtcttataa aaaactggaa tatacaaaaa ttctcaagtg attactctga aatagaacac
    20281 ctaaatgtga tcaatggcat gggagtgaca ttaggtgatt ctatcgtcgg gatttctgtg
    20341 ctgtcagcaa tcaaaaaaaa gaatcccaag attaaaatta agcttattcg accggagact
    20401 gcaccgtcat atgttgagga actgtatgaa ttagcatcct cggttataga tgagcttcat
    20461 tacatgcctt ttcatattca gaaattgcct tgtactgcat tgaatattga tgtgggaaat
    20521 cagctatatt ctccagattt ccatattatg gaaatgcatg attattttat ccaaggtctt
    20581 ggcgtgaaac ttgatgatgt taaccataat gagctatcta ataaatggtt aggcaatatt
    20641 gatctcggag cgccagtttt tgaaaactac acactttttg cacctattgc tagcacaaaa
    20701 ataagaagta taccgtcgaa gttctattat gacatagttg atatgctttc taggcgcgaa
    20761 ggaaaaacgg tactaggttt cgtggatgtg aatcataaaa attatattaa catatcaaag
    20821 tattcacccc atacgaaaga tttcatagcg ctaattaagt atgctagcaa cgtttatact
    20881 tgtgactcct ctgcattgca tatagccgct ggatttggtg tacctactga atgcgtgttt
    20941 aatacaatac cgccagaatt aagaacaaag tattacagta agtgtaagtc gatttatgtt
    21001 gggaataaaa gattagaaaa aattcagagt agtgaagatt tccaactggt taaaatggtg
    21061 gaaaataatt acagggagta tctttatggt taaaataata tcattcttat ccctaatgct
    21121 tttgtcaatt agtgcatata gcaatattgg ggatatagtt atagatggtt caatcgctaa
    21181 tgctaacagt gataaaggtt atgtgattac tgaaaagcag tttgattcgt tcccacggga
    21241 taccatcgta acgacaacac cttggacgcc aaccggtaaa aaagtaaaat tcaagggcgt
    21301 cgacctaagt tatgttttaa aactcgctgg cgctaatgga gcaaagctaa aattccatgc
    21361 tctgaatgat tatgaaatca ttgtagacat gaatgacgtt gaaaaatata acattttatt
    21421 ggctacagaa atggatggaa aaaggcttca aataagggat tttggacctt attttttggt
    21481 atatccttta gatgaacatt atattgagct taacacgcca cactatcttg cacggttcat
    21541 ttggcagata gacaaaatta cggtgctcaa atgaaaaaaa atttctttat cattttggtt
    21601 gctctgcttt tgttgatagc attcactgtg tctagtgttg ttaagtacac cagtctttta
    21661 tcggagaaaa atttatacac cgtcgctggc acccaagaaa actacggttt ctcagtggca
    21721 aaattcatta tacagttgaa tgagctttac acgctaatca atagcgataa tactattgac
    21781 gatgttaggc ttaaattcga tatcctttat tctcgtttga atgttattta tgtaaagagt
    21841 gaggcgactg cacctctata taaacagcaa ggctatgaag aaacaattga ttcgataaac
    21901 aaaaagcttg aagacataga cgggctgctt tcgcataatc accctgatta taaaaaaata
    21961 agtacaatca tagctgatat aaaaccgcta actaaaaccg ttacaaatct tgctgatatg
    22021 gctgaaatag cacaaaggaa tgacgctctt aaagatttca ggagcaaacg tcagcagtta
    22081 tggactctgc tttttattac aggtgggttg atttccttac ttctttttgt cctatttatt
    22141 tacataagta aaattaaccg attgttacta tcagaacggg ctgcttttgc cagtaaaaat
    22201 gcatttttag gtatggtagg ccatgaactc agaacatctt tacaggcaat agtgtctatc
    22261 attgatgtcg taaccaataa tctgagtgga gggattaaat ctggtcagat agaacgactt
    22321 gaaactgctg tttcgaaaat ggagcgccag ttaaatgatt tggctgaatt tgcaaaaatt
    22381 gacaacggat ctgtagagat aaaaaacacc tataatagct tgcaagcaat tgttactaac
    22441 gctgtgcagg attgcattgc tatttatgaa aaaaaggatg tcacagttaa aataaaaaac
    22501 aataatgatg cagtgatttt tacagatgct ctacgcctta atcaagtaat tgaaaactta
    22561 accagtaacg ctattaagta cactgagcgc ggggaagtta atgtagatta ctttatagaa
    22621 aaaggtaagg tattaaatat tgtcatttct gataccggaa agggaatccc taaagacaaa
    22681 ctaaagttca tatttaaacc atttacacga gttgtagatt cgaaatccac tgtacctgga
    22741 tttgggatgg gacttgctat tgttgcaggg ataatcagac tattaaaagg tactattcat
    22801 atatctagtg aagtaaatgt aggtacaact gttacagtga gaatacctat caagttggga
    22861 gatagcagcc ttgcaacagc tgaggtatct gcttcagctc ccggagatgt cttcggcgtt
    22921 cttagcttgc ttgttattga tgataatgaa atggcctgtt cgtctctttc cagtctgctt
    22981 actaatgctg gatacattgt cgaggctaca acctcgcctg aacgagccct ggaaaagctt
    23041 ctgcgtaaac cttatgacgt tgtcctgagt gatttacaaa tgccaggcat gacaggtgat
    23101 gagctgtatg caactgttag tagcagtcag aatcctaatc gatccacgcc tttcatattc
    23161 atcagcgcat acagtgatgc acactctatc ggacaggctc ctttgttaac taaacctgtc
    23221 aggttaaaag atataaacct taaaatacat gaggttatgt caaatcaagg acgagtcaaa
    23281 agtgagtagg cattgtcgta atatttgcga ttatagcttt ggtgttctcg atcgttgcga
    23341 attttgaaaa tttgtggagt caaatggcgc cgaaagcccg gcgtagccgg ttacctggct
    23401 ataaactctg ccaccctacc ccctgccctg attagcctta acccgcttac agcaatgaag
    23461 aagtaaaagt aatccctttt aaccccggtg agcgggcttt acggcgttta cgacgtaaag
    23521 ggcgtgattt ccggggcctt agcggcggca gcttgctgct gacgcttagg gggatgttct
    23581 tcagttattt cagcgacacc agggaactta acacggtagt tgcaaagcta tacccgctaa
    23641 aaatgtctca gatgcctctg tacgcggtcg gagtggtccc ggcaaggcgt cagccgcagc
    23701 cggggcgtat ctccgcgtta gcgggccgaa gggccgctta cgagcgtgta cccgacaact
    23761 gaccgcagct ccacccacag cgatgaagaa gagtagttac aacacccatc attaaaagcg
    23821 acactactcc cggccttcgg ccgggggcgg cggcgctttt cagtggtggg gaggggcacc
    23881 cggccggcaa accggcgccg gttttatgat gagctttctt ttgaatgctg taactaattt
    23941 ggttctccgg tcggggccct tcgcgaagcg atgggagctc tttctgatgt tgccgaaccg
    24001 gcgcgaccgt caggtcgctg caagagcggg cattctccgg agcctgtcca cagggtaggc
    24061 gatgaagagg ttatgtgttt acaggattta ttaaaggatc tttaaaagag atacagaact
    24121 ggtgtttaaa aggaactacg cgccctgaaa gaccgacggc aggctcagaa gatgctccag
    24181 cgtggccata gtacgttcac cgaagacgtg tgcaacaacc gtcctccgta tcctgtcata
    24241 cgcgtaaaac aaccagcgct ggcgtgattt agcgccgacg taaccccact gttcgtccat
    24301 ttccgcgcaa acaatgacgt cactgcccgg ttgtatgcgt gagtttaccg actgcggcct
    24361 gagaggcggt gtaagtgaac tgtagctgcc atgttttacg gcagtgagag cagagatagc
    24421 gctgatgtcc ggcagtactt ttaccgttac gcaccacgcc ttcagtagct gagcaggagg
    24481 gacaactgat ggagatggaa gccacgggag cacctcaaaa ccaccatcat acactaaatc
    24541 agtaagttgg cagcatcacc gtaatcgtac agctaagaac aagtgcttca agtctactta
    24601 ttaaaatgta cctttgaaaa agtagacttt ctgcggtacg ctctgacagt aagtttgccc
    24661 ccgatttttt acgcagcgcg ccggacggag cccgacatga tcctgattcc cgatgacgaa
    24721 ccggagctga gtctgcccgc agccagtgag gaattcctgc cggcgctgtc aggtgagaat
    24781 gccccggtca gcccggcccg ggcctacctg ctttcactca attcccaccg cagccggcag
    24841 accatggcct cgttcctgaa catcgtcgcc gttatgctcg gagctgcctc cctggagtcc
    24901 tgcagctggg gcagcctgcg gcgccatcac gtgatggccg tgaccgaact gctgcgcgac
    24961 accggccggg ccaccgccac cgtcaacacc tatctttcgg cactcaaggg cgtggcgaag
    25021 gaagcctgga tgctccggct catggatgtg gagagcttcc agcatatccg ggcggtccgt
    25081 aacctgcgcg gcagtcggct gcccagcggt cgggcgctgc cccaggggga gatccgcgcc
    25141 ctgtttgccg tctgtgaagc cgatcgcagc tgcctcgggg cgcgggatgc agcgatgctg
    25201 gcggtcattc tcggctgcgg cctgcgacga tccgaagtag tgagcctgga tttgcgtgac
    25261 gttgtcactc aggaccgtgc gcttagagtg ctgggtaagg gaaacaagga gcgactggca
    25321 tatgtcccgg ccggtgcctg gcagcggctg cagatctgga tcgatgagat ccggggcgag
    25381 accccgggcc cgctgttcac acgcatccgt cgtttcgggg atgtgactct aaaccggcta
    25441 accgaccagg cggtgtacca tatcctgcag gtgcgccagg gtcaggccgg catcacgaaa
    25501 tgttctccac acgatctgag gcgaaccttc gccaccgcga tgctggataa cggggaggat
    25561 ttaattaccg tgaaggatgc gatgggccac gcgagcgtca ccaccaccca gcagtatgac
    25621 cgtcgcgggg agcaacgcct gcaggacgcg cgggatagac tcaaccttat ttagggctaa
    25681 gtaaacacaa acaagggggc tgtaccccct ctaattttac attaacacga tactcgacag
    25741 actttcccag tcgtagtcag caaccatcgc ccgatggagg ctgggataaa tgctgacagc
    25801 ccgacgtgaa gcaaaaggct ctcgccgctg gcatggctta atgtcgcggt cccctcaatc
    25861 actaacacaa tttcagcgct ggatgtcatt accgtttgat tgttcaccgc agtgaaaata
    25921 ctgaaatgga aatcctcaac aggaatagga tagcgcgctt ctgcggcgtg ctgttccggt
    25981 aacatagggg agcccgcaga attcggaaaa aatcgtacgc taaggttttc cgggcatccg
    26041 taagggccga aacttcccgt cttccagtct gcggctctgc cgccagacgt aatcgccggt
    26101 taggttgatg tgctcccagc ccagcggcga caggaattgc agcagctcgc cgtccaccgg
    26161 cttgccggcc tcgaccaacc cctgggtggc gcgttccagg tacaccgtgt tccacagcac
    26221 gatagccgcc gtcaccaggt tgaggccgct ggcccggtag cgctgctgct cgaagctccg
    26281 atccctgatt tccccaaggc ggttgaagaa caccgccctg gccagcgagt tgcgcgcctc
    26341 acctttgttc aggccggcat gcacgcggcg gcgcagttca acactttgca gccagtccag
    26401 gatgaacagc gtgcgctcga tccggcccag ctcgcgcagg gccacggcca gtccgttctg
    26461 gcgcgggtag ctgccgagct tgcgcagcat cagcgaggcg gtgacggtgc cctgcttgat
    26521 cgagctggcc aggcgcagga tgtcgtccca gtgggcacgc acgtgcttga tgttcagggt
    26581 gccgccgatc agcgggcgca acgtcgggta ggcttgcacg ccctgcggca cgtacagctt
    26641 ggtttcgccg aggtcgcgga tgcgcggcgc gaagcggaag cctagcaggt gcatcagggc
    26701 aaagacgtga tcggtgaagc cggccgtgtc ggtgtagtgc tcctcgatcc gcaggtcgga
    26761 ctcgtggtac agcaggccgt cgagcacata ggtggaatcg cggacgccga cattcaccac
    26821 gcgggtgctg aacggcgcgt actggtcgga gatatgggta tagaacagcc gtcccggctc
    26881 gctaccgtac ttcgggttga cgtgcccggt gctctcgccc cggccacccg cgcggaagcg
    26941 ctggccatcg gaggatgagg tcgtgccgtc gccccagtgg gcggcaaagg cgtggcgata
    27001 ctggtggttg accagctcgg ccaaggccgc cgaataggtt tcgtcgcgga tgtgccaggc
    27061 ttgcagccag gacagcttgg cgtaggtcag gccggggctc gactcggcca tcttggtcag
    27121 cccgaggttg atcgcatcac cgaggattgc ggacagcagc aacgtcctgt ctttggcctc
    27181 ggccccgtcc ttcaagtggg tgaagtggcg gctgaagccc gtccagtcgt ccacgtccat
    27241 cagcagttcg gtgatcttga tgcgcggcag taactggctg gtttggtcga tcagcgcctg
    27301 cgcccgatcc ggcaccgccg catccagcgg ggtgattttc agccctgact cggtgaggat
    27361 ggcatcgggc agctcgttgt ccttggccag gcgggtgacg gtggccaact gctcgtccag
    27421 cagctgcaaa cgctcttcca ggtactggtc gctgttcggg ttgatcgcca ggggcagggc
    27481 ctgctcgcgc ttgagtgcgg cgaacttctc ggccggcagc aggtagtcgt cgaagtcgcg
    27541 gaactgccgc gagcccttga cccagatgtc g
//
LOCUS       DAJVUN010000043        26810 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.043, whole genome shotgun sequence.
ACCESSION   DAJVUN010000043 DAJVUN010000000
VERSION     DAJVUN010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 26810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26810
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.043"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..328)
                     /gene="rpnB"
                     /locus_tag="OQQ76_001477"
     CDS             complement(<1..328)
                     /gene="rpnB"
                     /locus_tag="OQQ76_001477"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnB"
                     /protein_id="HCS1968023.1"
                     /translation="MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTT
                     LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA
                     MQNHLDA"
     gene            complement(525..1298)
                     /gene="hisP"
                     /locus_tag="OQQ76_001478"
     CDS             complement(525..1298)
                     /gene="hisP"
                     /locus_tag="OQQ76_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter ATP-binding protein
                     HisP"
                     /protein_id="HCS1968024.1"
                     /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK
                     STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
                     LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR
                     VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
                     STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK"
     gene            complement(1306..2022)
                     /locus_tag="OQQ76_001479"
     CDS             complement(1306..2022)
                     /locus_tag="OQQ76_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1968025.1"
                     /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL
                     AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTEFLNAFFRSGL
                     NCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSTFKMYRCIILPSALRIAL
                     PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI
                     SLFRRAEKRWLQHVKPSSTH"
     gene            complement(2019..2705)
                     /gene="hisQ"
                     /locus_tag="OQQ76_001480"
     CDS             complement(2019..2705)
                     /gene="hisQ"
                     /locus_tag="OQQ76_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012124147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter permease HisQ"
                     /protein_id="HCS1968026.1"
                     /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL
                     SELIFEGYTTLIRGVPDLVLMLLIFFGLQIALNTVTEAMGVGQIDIDPMVAGIITLGF
                     IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQV
                     ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR
                     YSVGVKRADL"
     gene            complement(2795..3577)
                     /gene="hisJ"
                     /locus_tag="OQQ76_001481"
     CDS             complement(2795..3577)
                     /gene="hisJ"
                     /locus_tag="OQQ76_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter substrate-binding
                     protein HisJ"
                     /protein_id="HCS1968027.1"
                     /translation="MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNS
                     QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
                     IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV
                     SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG
                     MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG"
     gene            complement(3798..4580)
                     /gene="argT"
                     /locus_tag="OQQ76_001482"
     CDS             complement(3798..4580)
                     /gene="argT"
                     /locus_tag="OQQ76_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/arginine/ornithine ABC transporter
                     substrate-binding protein ArgT"
                     /protein_id="HCS1968028.1"
                     /translation="MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDA
                     KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE
                     IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV
                     AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG
                     VGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD"
     gene            complement(4846..5415)
                     /gene="ubiX"
                     /locus_tag="OQQ76_001483"
     CDS             complement(4846..5415)
                     /gene="ubiX"
                     /locus_tag="OQQ76_001483"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin prenyltransferase UbiX"
                     /protein_id="HCS1968029.1"
                     /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL
                     SLETDFSLREVQALADVTHDARDISASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG
                     LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD
                     DVINQTVNRVLDQFAITLPEDLFARWQGA"
     gene            complement(5510..7027)
                     /gene="purF"
                     /locus_tag="OQQ76_001484"
     CDS             complement(5510..7027)
                     /gene="purF"
                     /locus_tag="OQQ76_001484"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCS1968030.1"
                     /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR
                     LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN
                     GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT
                     NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG
                     FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR
                     VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT
                     FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY
                     LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE
                     NPDIQQFECSVFNGVYVTKDVDQGYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG"
     gene            complement(7064..7552)
                     /gene="cvpA"
                     /locus_tag="OQQ76_001485"
     CDS             complement(7064..7552)
                     /gene="cvpA"
                     /locus_tag="OQQ76_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin V production protein"
                     /protein_id="HCS1968031.1"
                     /translation="MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHY
                     YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV
                     CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRCFFDYLQSSSSFLP
                     RA"
     gene            complement(7811..8473)
                     /gene="dedD"
                     /locus_tag="OQQ76_001486"
     CDS             complement(7811..8473)
                     /gene="dedD"
                     /locus_tag="OQQ76_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416817.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DedD"
                     /protein_id="HCS1968032.1"
                     /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV
                     PKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPA
                     PVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEI
                     VGELRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYT
                     PN"
     gene            complement(8463..9731)
                     /gene="folC"
                     /locus_tag="OQQ76_001487"
     CDS             complement(8463..9731)
                     /gene="folC"
                     /locus_tag="OQQ76_001487"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HCS1968033.1"
                     /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSQVAARLGV
                     LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE
                     SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD
                     ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSAKPAIVGEPEMPSTIADVAQEKGA
                     LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA
                     IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH
                     DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA
                     KAEDTVLVCGSFHTVAHVMEVIDARRSGGK"
     gene            complement(9801..10715)
                     /gene="accD"
                     /locus_tag="OQQ76_001488"
     CDS             complement(9801..10715)
                     /gene="accD"
                     /locus_tag="OQQ76_001488"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HCS1968034.1"
                     /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE
                     VCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKET
                     GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS
                     ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI
                     AEPKALIGFAGPRVIEQTVREKLPLGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK
                     LMNLPAPNPEAPREGVVVPPVPDQEPEA"
     gene            complement(10871..11530)
                     /locus_tag="OQQ76_001489"
     CDS             complement(10871..11530)
                     /locus_tag="OQQ76_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1968035.1"
                     /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV
                     VTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGDKLFS
                     NPDSKIFRCSYLDKTHQFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
                     VIGALLWVLIFTYAGYFFGTLPFIQSNLKLMIVGIIFVSILPGVFEFIRHKRAAARAA
                     K"
     gene            complement(11613..12425)
                     /gene="truA"
                     /locus_tag="OQQ76_001490"
     CDS             complement(11613..12425)
                     /gene="truA"
                     /locus_tag="OQQ76_001490"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HCS1968036.1"
                     /translation="MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS
                     QVANEPITVFCAGRTDAGVHGTGQVVHFETTAQRKDAAWTLGVNANLPGDIAVRWVKA
                     VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND
                     FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN
                     QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD"
     gene            complement(12425..13438)
                     /locus_tag="OQQ76_001491"
     CDS             complement(12425..13438)
                     /locus_tag="OQQ76_001491"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1968037.1"
                     /translation="MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAG
                     EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL
                     EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS
                     ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD
                     EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFAQGEDIVLSEE
                     NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE
                     YLY"
     gene            complement(13504..14640)
                     /gene="pdxB"
                     /locus_tag="OQQ76_001492"
     CDS             complement(13504..14640)
                     /gene="pdxB"
                     /locus_tag="OQQ76_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase PdxB"
                     /protein_id="HCS1968038.1"
                     /translation="MKILVDENMPYARDLFSRLGEVTAVPGRPIPVAQLADADALMVR
                     SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS
                     LLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS
                     LDELVQHADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL
                     TCLNEGQKLSVVLDVWEGEPELNVELLTKVDIGTPHIAGYTLEGKARGTTQVFEAYSK
                     FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG
                     EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR"
     gene            14739..15734
                     /gene="flk"
                     /locus_tag="OQQ76_001493"
     CDS             14739..15734
                     /gene="flk"
                     /locus_tag="OQQ76_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulator Flk"
                     /protein_id="HCS1968039.1"
                     /translation="MIQPISGPPPGQPPGQGDNLPSGAGNQPLSSQQRTSLESLMTKV
                     TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ
                     LGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT
                     DRPLLPAEHNALKQLVTKLTAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL
                     QARQTLSQQNTPTLESLQMALKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL
                     NQLYQRRVKGIDPRDMQPLLNPFPPMMDTLQNMATRPVLWILLVAIILMLVWLVR"
     gene            complement(15731..16909)
                     /locus_tag="OQQ76_001494"
     CDS             complement(15731..16909)
                     /locus_tag="OQQ76_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1968040.1"
                     /translation="MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH
                     DLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA
                     ILPVSAPLKFALLVVGRLILGFGESQLLTGALTWGLGIVGAKHSGKVMSWNGMAIYGA
                     LAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGLI
                     WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF
                     GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ
                     VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG
                     "
     gene            complement(17202..18422)
                     /gene="fabB"
                     /locus_tag="OQQ76_001495"
     CDS             complement(17202..18422)
                     /gene="fabB"
                     /locus_tag="OQQ76_001495"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HCS1968041.1"
                     /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM
                     RSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADTGLSPEAYQNNPRVGLI
                     AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS
                     SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA
                     SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG
                     AVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS
                     LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF
                     GGTNATLVMRKLKD"
     gene            18581..20587
                     /gene="mnmC"
                     /locus_tag="OQQ76_001496"
     CDS             18581..20587
                     /gene="mnmC"
                     /locus_tag="OQQ76_001496"
                     /EC_number="1.5.-.-"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HCS1968042.1"
                     /translation="MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG
                     GNQLEVRFPEHPHPLFVVAESGLGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK
                     FPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINEL
                     TSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRR
                     GLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIAC
                     ALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFAR
                     RFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVA
                     TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ
                     QATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQ
                     NPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV
                     RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAP
                     LCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG"
     gene            complement(20708..20986)
                     /locus_tag="OQQ76_001497"
     CDS             complement(20708..20986)
                     /locus_tag="OQQ76_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcL family protein"
                     /protein_id="HCS1968043.1"
                     /translation="MIAEFESRILALIDGMIDHASDDELFASGYLRGHLTLAIAELES
                     GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ"
     gene            complement(21020..21568)
                     /gene="epmC"
                     /locus_tag="OQQ76_001498"
     CDS             complement(21020..21568)
                     /gene="epmC"
                     /locus_tag="OQQ76_001498"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HCS1968044.1"
                     /translation="MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPY
                     NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ
                     ALDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA
                     LQNYYHTLELTAEQFPWPEALN"
     gene            complement(21568..22377)
                     /locus_tag="OQQ76_001499"
     CDS             complement(21568..22377)
                     /locus_tag="OQQ76_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HCS1968045.1"
                     /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM
                     AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFVGSMSGALLVQ
                     YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG
                     PAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG
                     QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN"
     gene            complement(22377..23201)
                     /gene="mepA"
                     /locus_tag="OQQ76_001500"
     CDS             complement(22377..23201)
                     /gene="mepA"
                     /locus_tag="OQQ76_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HCS1968046.1"
                     /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC
                     IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA
                     GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI
                     FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA
                     DSLECEDQPLPPPGDGCGAELQSWFAPPKPGTTKPEKKTPPPLPPSCQALLDEHVI"
     gene            complement(23205..24290)
                     /gene="aroC"
                     /locus_tag="OQQ76_001501"
     CDS             complement(23205..24290)
                     /gene="aroC"
                     /locus_tag="OQQ76_001501"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HCS1968047.1"
                     /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGILLTEADLQHD
                     LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF
                     RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM
                     GDIPLEIKDWSLVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL
                     GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI
                     LGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA
                     MLAIVLMDHLLRQRAQNADVKTDIPRW"
     gene            complement(24325..25257)
                     /gene="prmB"
                     /locus_tag="OQQ76_001502"
     CDS             complement(24325..25257)
                     /gene="prmB"
                     /locus_tag="OQQ76_001502"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1968048.1"
                     /translation="MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDE
                     AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH
                     EFYVDERVLVPRSPIGELINNKFAGLIGKQPQHILDMCTGSGCIAIACAYAFPDAEVD
                     AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD
                     LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV
                     PFTWLEFDNGGDGVFMLTKEQLLAAREYFAIYKD"
     gene            25423..25974
                     /gene="smrB"
                     /locus_tag="OQQ76_001503"
     CDS             25423..25974
                     /gene="smrB"
                     /locus_tag="OQQ76_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HCS1968049.1"
                     /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV
                     KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG
                     LTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK
                     EYGGDAALLVLIEVEEWLPPELP"
     gene            complement(26031..26795)
                     /locus_tag="OQQ76_001504"
     CDS             complement(26031..26795)
                     /locus_tag="OQQ76_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004985136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2544 domain-containing protein"
                     /protein_id="HCS1968050.1"
                     /translation="MSGDSGGQSTEFEFHLIIATPDSVNYAIFKATFMPNSQPDLVSW
                     TGDSSTQPSMSKISDSRVSMSACPGLEQYDSQTKTGWTCNELKMFVYYDGNLHGCPWI
                     VSSFVKSRDPFAKTYDDDFPDYIGPTKVSSSCPAVPLAPYDVSWNENYVVHNKVVRLQ
                     STGGVIEQTLPTFLMENGKLCNGNNFDERGVYCRFIAQQMTFSTSGCDNAKVTVTPEP
                     QPITSRQLHDMKLRVDTTSRQPIDSTCRFTYILNMY"
BASE COUNT         6614 a         7330 c         6758 g         6108 t
ORIGIN      
        1 ccgcatcaag atggttttgc attgccgcaa tggaataacg catcatgcga aaagccatta
       61 attcttccgg cttactttgg tgctctatca ctacataaat ataacccact ccctcctgcg
      121 ttttcacaga ccacaagagg tcggaataat attgccgcag gtcttcatca ataaaactgt
      181 ttggttccag tttaagcgtc gttaaatcac acagtttgcg cagcggcgcg ggaagatgaa
      241 tatcaataaa atcccgcgcg gtgtctggat ggcgtaaaaa agatttaaat accgcatcat
      301 gcggcgtgga agttgtcgat attgtcatgg cgttccgtca cccctcaaat ttaagatgac
      361 gcgacaataa ccacgattaa cacccaatgc agcaggcagt ttttatcttt ggacagcgaa
      421 ttcagaagta tttttagcgg actgcaactt ttacatttca gcggaagctg actcgcaaat
      481 tccccatgaa aatactccgg cagcgttagc caccggagag gaaattattt cagcgatccc
      541 ttaaggaact gttgcagacg agggctttgc gggttgccaa ataactgctc cggcgcgccc
      601 tcttcttcta ttttcccctg atggaggaaa atgacatgag tagaaacatg gcgagcaaag
      661 cccatttcgt gagtcactac caccatggtt ttcccctctt ctgccagttg ctgcataata
      721 cgcaacactt cgcctaccag ttcaggatcg agcgccgagg taggttcatc aaacagtaaa
      781 acttccggtt ccatcgccag cgcccgcgcg atagaaacac gctgttgctg accgccggaa
      841 agatgcaccg gatatttccc ctgcgcacgt tcgtctatcc cgacttttgc cagatacttg
      901 accgcccgct cgcgcgcttc ctgcttgctc aggcccaaca cctgaatcgg cgcttccatg
      961 acgttttcca gcaccgtcat atggctccag agattgaagt gctggaatac catcgtcagg
     1021 cgtgtgcgca gtaagcgcag ttgattttta tcggcgactt tgagttgacc gtctttgtcg
     1081 cgcaccagat tgatcgtctg gccattgacc acgatcgacc cttcactcgg tttttcgagg
     1141 aagttaatgc agcgcagaaa ggtacttttc cccgatcccg acgatccgat gatgcttatt
     1201 acatctccgg cattcgcttg cagtgagacc cctttcagca cttcatgttc gccgtagcgt
     1261 ttgtgcaaat cgataacgtt taatttattc tcggacatcg tattctcagt gcgttgaaga
     1321 aggtttcaca tgctgcaacc agcgtttttc cgctctgcga aagaggctga tcaggacata
     1381 agagatgatt aaatagagca ccgcggcaat gccgaaggcg gtaaaaggtt gatacgtggc
     1441 ggcgttaata tcgcgggcta ttttcagcag atccggcaca gtggccgtaa acgccagcgc
     1501 agtagagtgc agcatcagga tcacttcgtt gctgtatgcc ggtaacgcaa tacgcagcgc
     1561 agaaggcaaa ataatgcaac gatacatttt aaaagtcgag aagccatagg ctctggcggc
     1621 ttcaatttcc ccatgcggaa ccgaacggat tgccccagca aaaatctcgg tagtgtaagc
     1681 gcaggtgtta agcgtcagcg ccagcacggt acagttcagg ccactgcgga agaaagcgtt
     1741 aaggaattcg gttcccttaa caatctcaag cgtgtacatg ccggaataga acaccagcaa
     1801 ctgaacatac agcggcgtac cgcgaaaaat ataggtaaat aaccagattg gaaactggat
     1861 gtatttatta ctggagacac gaccaatcgc cagaaacagc gccaggactc cgcctatcac
     1921 taccgacaaa ataagcagcc acagagtgat cgccacacca gtaaagcgat aaccgtcggt
     1981 ccacagcagc ggtttccagt attcatgtaa gatttcgatc acaggtcagc cctcttcaca
     2041 cccacggagt agcggcgctc aaggaacagc agcacaccat tggaaacagt ggtgaaaacc
     2101 aggtaaatca cgccacagac gatggcgaaa tagaacggtt cccaggtact tttgcctgcc
     2161 agttgggtgg ctttgaccac atcttccagg ccgagtaacg aaaccagtgc ggtagatttg
     2221 aggatcacct gccagttgtt gccaatgcct ggcagggcgt aacgcatcat cgccggaaac
     2281 atgatccgcc gaaacacttg cccacgagta aaaccgaacg ccgtcgccgc ctctatatgt
     2341 cctttcggca ctgccataaa agcaccacgg aacgtttcgg taaaataagc accgtagata
     2401 aaaccgagag tgataatacc agcgaccatc ggatcgatat caatctgccc gacgcccatc
     2461 gcctccgtca ccgtgtttag cgcaatctgc aaaccgaaga aaatcagcag catcaacact
     2521 aagtccggca cgccacgaat cagcgtggtg tatccttcga aaatcagctc cgaaagccga
     2581 ttttgcgaga gcttaccgcc agcgccaatt aaaccgatga ttacagcgag cactacagag
     2641 ctgatagcca gctccagcgt gacgagcgca ccctgtaaaa taacacctga aaacccatac
     2701 aacatgctgc ctgtcctgtc gtgtgtggtg aattaccgcc tcttgtctcc ctccggttac
     2761 ccgaagggag cgggctttct ttcaccgatg gcgattagcc accataaaca tcaaaatcga
     2821 agtacttttt cgctaatttc tcgtaagtac cgtcagcgcg catttcggca aaggctttgt
     2881 tcagtgcttc gcgcagttcg ttatcttctt tacgcaggcc catgccggtc cctacgccaa
     2941 acagtttttc atctttaaca gacgggccac cgaatttgta atctttaccg acaggttgtt
     3001 tgaggaaacc ttcgctggca gcgacctcat cctggaacgc ggcatcaata cgtccggcag
     3061 tcaggtcaga ataaatgttg tcctgcccct gatacgagac gatttcaatg ccttttggtg
     3121 cccaatgttc attaccgaac gtctcctggg tggtgccctg caatacgcct acccgtttgc
     3181 ctttcagcga ctcgactgtc ggctgaatgt cagaattttt cgccaccacc aaacgagaat
     3241 cggcagcgta cagtttgtcg gtgaaggcta tttcttgctg acgtttttcc gtaatggaaa
     3301 gcgatgacat gatggcgtca atcttcttcg cttttaagga cgggattaac gcatccagcg
     3361 gattttcgac aaacgtacat tgcgtattga tgcgtttgca taattccttt gccagatcga
     3421 tatcgaagcc aaccagttcg ccttgtgaat tttttgattc aaatggcgca taggtcgggt
     3481 cggtaccgat gcggatgttt tgcggaatcg cagcaaatgc cgcagttgcg ctggagaagg
     3541 ccagaaccag agagagcgat agcaccagtt ttttcataat gtcctcaact gacagtcttt
     3601 ttatagggaa tatttacagg tttgttacac ttatcgtgcc ataaaattga ccatcaaggc
     3661 aaaatatccc gccccgttag acgtattatt tttcattaaa aatgcttaag tatgcatttc
     3721 aatgcaccac gatagtgcaa caaacctagc gtgcaccatg atgatcattc catcaggtac
     3781 agcttcccag cgacgtatca gtcaccgtag acattaaagt cgaaatactt tttcgccatc
     3841 ttgtcgtagg tgccgtcctg acgcagctcg ccaagcgcct tattgaaggc agccgtcagt
     3901 tcagcatcat ctttacgtag ccctacaccg gtgccatcac cgaagtattt tttgtctttt
     3961 actgatgagc cagcaaaggc gaaatcttta ccagcaggtt gcttgaggaa tccttcgctg
     4021 gcagcaactt catcttgtaa cgcagcatcc agacgtcctg cagccagatc ggaatagacc
     4081 aaatcctggt tggcataggc caccacatcc acgcctttgc tacgccaggt ctcgttagcg
     4141 taagcttcct gggttgatcc ctgcagcaca ccaacatgtt tacctttcag tgaatccagc
     4201 gttggctgaa tcggtgaacc tttggcagca atcaaacgag aatctgcggc gtacagcttg
     4261 tcggagaagg caatctcctg ctgacgttta tcggtaatgg aaagcgacga aataatggcg
     4321 tcgatttttt tcgctttcag tgaggggatc agcgcgtcaa agtcactggc aacccaggta
     4381 catttcacct gcatccgttt gcacatctcg ttaccgagat cgatatcaaa gccaacaaaa
     4441 tcacctttag catctttcga cgagaacggc gcataggtgg tatcggttcc gatacgtacc
     4501 gtctccggta gcgccgcata gctggaagcc gctgcggaga gaccgactaa caaagacaga
     4561 gcgagaatcg acttcttcat acataaccct caagtgaaaa tggctttttt atgttgtgta
     4621 ttgtgttgtg tgtttgcagg ctctttcatg caggtcttat gccatcttga cgacaacagt
     4681 aacattcaac gttaaatatg ttaataagac gttgcattat tgtcctgaag ttgaagatag
     4741 caggtatagc ggttgaatcg cagcgtttcg attgaatggc agaaacaaaa tgtcgaggat
     4801 ttgatcgcgg ttgcaaaatt gccctgaaac agggcaacag cggagttatg cgccctgcca
     4861 gcgggcaaag agatcttcag gaagggttat tgcaaactgg tcaagaacac gattaaccgt
     4921 ctgatttatc acatcatcaa gggattgcgg gcgatgataa aacgccggaa caggaggcat
     4981 aatcaccgca ccgatttctg ccgcctgagt cattaaacgc agatggccta agtgcaatgg
     5041 tgtttcacgc acgcagagca ccaacgggcg acgctctttc agcaccacat ctgccgcacg
     5101 ggtcagtaag ccatcagtat agctatggac aatgccggaa agggttttga ttgaacaggg
     5161 taaaatcacc atccccagcg tctggaaaga accggaagag atgctggcgg aaatatcgcg
     5221 cgcatcgtgc gtgacatcag ctaatgcctg cacttcgcgc agggaaaaat ccgtttcgag
     5281 ggataaggtc tggcgcgccg cctggctcat caccagatgc gtttcgatat ctgtgacatc
     5341 gcgcagaacc tgtaataagc gcacgccata aatcgcgccg ctggcaccgc tgatgcctac
     5401 aatgagtcgt ttcataaata gttgccctgt cagacttgca ggcagacttt gcagtatttc
     5461 ggcgggagtt gcaagtcagg gtgccagacc ggcaccctca gcgaaggcat catccttcgt
     5521 tatgcatttc gagattttcc acttcgttct gacgttgcac tgctttggcg tcatcattac
     5581 gtaacgtatc gaggaaatcg aggtagccct gatcaacatc tttggtgacg tagacgccgt
     5641 tgaacaccga gcattcaaac tgctggatat ccggattttc agcgcgaacg gcgtcgatca
     5701 gatcgttcag atcctggaaa atcaacccgt cagcaccgat gatctggcga atttcatcaa
     5761 cttcgcgacc gtgagcgatc agttccgtgg cgctcggcat atcaatacca taaacgttcg
     5821 ggaagcgaat ttccggtgcc gcagaagcga ggtacacttt cttcgctccg gcttcgcgtg
     5881 ccatctcgat aatctgctca gaagtggtgc cacggacgat ggagtcgtcg accagcagga
     5941 cgtttttatc gcggaactcg gcgcggttgg cgttcagttt acggcgcacg gacttacgac
     6001 gcagctgctg gcccggcatg atgaaggtgc ggccaacata gcggttttta acgaagccct
     6061 ggcggtacgg cttgcccaga atacgagcaa tttccagcgc gatatcacac gaggtttccg
     6121 ggatcgggat caccacgtcg atatccagat cttcccattc gcgggcaatt ttctcaccca
     6181 gtttcgtgcc catattcaca cgcgcgctgt aaacggaaat tttgtcgata aacgagtccg
     6241 ggcgggcaaa gtatacatac tcaaacaggc acggattgct gaccggattg tcagcacatt
     6301 gacgggtaaa caactgccct tcttcagtga tgtaaatcgc ttcgcccggc gcgacgtcac
     6361 gcaggaaatc aaagcccagc gtatcgagcg ctacgctttc ggaagcgacc atatattctg
     6421 tacggttctc gtcaatatca cgttttccca gtaccagcgg acgaatcccg tttggatcgc
     6481 ggaaagcaac cataccgtgg ccgataatca tcgccacaca ggcatatgcg ccgcggatta
     6541 agcggtttgt ggcagcaatg gcagcgaaaa tattgtcggc ttccagcggg tagtggcgga
     6601 agttgtccag ctcgctagcg aagatattaa gcagaatttc cgagtcggaa gtggtgttga
     6661 tgtggcggcg tttttcttca aacagttttt tacgcaactc gtgagcgttg gtcagattgc
     6721 cgttgtgggc aagcgtaatg ccatacgggg agttaacgta aaacggctgc gcttcagagg
     6781 cgctggagct gccagccgta gggtaacgca catgaccaat gcccatattg ccctgcaaac
     6841 gctgcatatg gcgagcttca aatacatcgc tcaccagccc gttcgcttta cgcaaacgga
     6901 agcagttatt ggcatctatg gtgatgatgc cggcggcatc ctgaccgcga tgctgaagca
     6961 ccgttaaggc atcataaatc gactggttaa ccggcataac accggcgata ccgacaatac
     7021 cgcacatacg tctttttcct cgttaagcca catctcagag cacttacgct ctgggcaaga
     7081 aacttgacga gctttgcaga taatcaaaaa aacatctgat gataaaactg aactgcggga
     7141 tcagctgtga tttgctccag tcttcgcttt tcgacacccc ggtaaaggag tcgagaaaga
     7201 agagaatggc ggcaacaatc aacacaccgc gcaacgcacc gaaacagacg cccagcaccc
     7261 gatcggtgcc tgacaacccc gttttctcca ccaactggcc tatcacgaag ttcacgatag
     7321 caccaacgat cagggtagcg ataaacagta ccgcgatggc aattccattt cgaaccagtt
     7381 cgtcttcaaa gcccgtaaac cagactgaca ggtaagtgta gtaatgactg gcaacaaaga
     7441 aagcacaacc ccatgtcacc agcgataacg cttcacgaac aaagccgcgg atcaggctaa
     7501 ccagagagga aaaagcaatc accgcgatta tggcgtaatc aatccagacc atatgtgtcc
     7561 cacgatttta cgccctgtca tcctgttcgg ggcgcattct aacagaaaaa gaaaacgttt
     7621 gcgtagggat ttccttccca cgcatcaata aaaatggcgc tgaaaaaata ttcaacgcca
     7681 tcgacttttt atgcctttgc ggcatcgtgc aatgcgtgtc ggatgcggcg taaacgcctt
     7741 atccgaccta cggttctaac actgcccagg cctgataaga cgcgccagcg tcgcatcagg
     7801 caagactgta ttaattcggc gtatagccca ttaccacgcc acttaagcca gaaagttgct
     7861 tcaactcacc cagcgaacct ttcagcttat ctttcgaggc atccggccca accagaatac
     7921 gggtaatttt accctgcact ggcgtggatg gcgacgtata aacccgataa ccggcaccgc
     7981 gcagctcacc gacaatctca ttcactttat cggcattttt cagcgcaccc agttgcacaa
     8041 cataggcttt acccgttggc gctgcttttt cttccacgac cggcttcggt tctggcttcg
     8101 gcgcaggtgg tgcttcaacc ttcggtttag gcggctccac cggtttcggc ttcggtgggg
     8161 cgaccggtgc aggttccggt tcaaactcgg tgttattggc tgcaatagtg gccggatcga
     8221 gcgacggtgc tgcggcatca cctgcccgca cctcttccgc tgcgccttcc ggcggctgcg
     8281 tcggcaacgc ctgggtggcg gctggcatca tatcaggctc atcgcgatcg cccgcttttg
     8341 gaaccagcgg gatagccgca aactcatcct gataatgttt tttctgcccg tccagcagcc
     8401 ctggaagtac aatcaccccc agcgccacca gcacgatcgt gcccactaac cgattctgaa
     8461 acttacttgc caccgcttct cctcgcgtca atcacttcca tgacatgtgc gaccgtgtgg
     8521 aaagaaccac acaccagcac ggtgtcttcc gctttagcgt ccgccattgc ggcatcccat
     8581 gcctgcgcaa cgctatcaaa tgatttgccg ttacccaaat gctcaagcag ttgttctgcc
     8641 gtggcaccgc gcggcccttc cagtggcgca caataccagt catcaaccac gcttttcaac
     8701 caggccagag ttccggcaat atctttatca tgtagcatac cgataaccgc cagcacgcgc
     8761 ccgtttttcg gtagcgcttt catacgcccg gtgagatatt ccgccgcatg tggattatgc
     8821 gcgacatcaa aaataacgcg tggcgactcg ctcacaatct ggaaacgtcc cggcaaaatt
     8881 gcgctggcaa tcccgtcgcg aatggcattt tcactgactt ccagcccgct ggcacgcagt
     8941 gccgccagcg ctgttgcggc attcggttgc gggacaagcg gcaacggcag attttccagc
     9001 gtgccgtgag catcgctaaa cgcccagtca tgatcggtga cggaatagtt ccactcaacg
     9061 ccccgacgtt gtaacagtgc acctttttcc tgcgccacat cagcaatggt agaaggcatt
     9121 tccggctcac cgacaattgc cggttttgcg ctgcgaaaga tgcctgcttt ctcgcgacca
     9181 atactttcgc gatctggccc cagccagtcg gtatgatcca gcgcaatact ggttactacc
     9241 gcgacatcgg catcgacaat attggttgcg tccagacgac cgcccagccc tacttccaga
     9301 atcaccacgt caagttgtgc ctgtttgaac agccacaacg ccgacagcgt accgtactcg
     9361 aaataggtca gggaaatatc accgcgtgcc gattcaatct ccgcaaaaga ggcggtgtgg
     9421 gccgattccg gcaattcctg accctgcaca cgtacgcgct cggtataacg caccagatgc
     9481 ggcgaactgt agacgcccac tttgtaccct gccgccatca gaatcgactc cagcgtacgg
     9541 caggtggtgc ctttgccatt cgtacccgca acggtaaaca caaatggcgc tggtttcaga
     9601 acgccaagac gagccgcgac ctggctcacg cgctcaaggc cgagatcgat agttttactg
     9661 tgcaggtttt ccagataaga aagccacgaa gccagaggcg acgcggcttg aggagtgcgt
     9721 ttgataatca tggtatccgc tgattcgtta cggtgagaat agcaaaaggg cagagccagt
     9781 ggccctgccc ttatcagtta tcaggcctca ggttcctgat ccggtaccgg gggtaccact
     9841 acgccttcac gcggcgcttc aggattcggc gctggcagat tcatcaactt cgccagaatg
     9901 ctcgccagtt tcaggcgcat ttccggacga cggacgatca tgtcgatcgc gcctttctcg
     9961 atcaggaatt cactgcgctg gaatcctagc ggcagttttt cgcgaacggt ctgttcgata
    10021 acacgcggac cggcaaagcc aattaacgct ttcggttcag cgatgttgag atcgcccagc
    10081 atggcgaaac ttgcagaaac accgcccatc gtcgggtcgg tcagcacgga gatgtacggc
    10141 aagccgcgct cctgcatttt tgccagtgcc gcagaggttt tcgccatctg catcagcgac
    10201 atcagtgctt cctgcatacg tgcgccacca gaggcggaga agcagatcag cgggcagtta
    10261 tcttccagcg cctgctcaac ggcacgcacg aaacgtgcac ccacaacaga ccccattgaa
    10321 ccgcccataa aggcgaactc gaatgccgca gcgacaaccg gcattccata cagagtgcct
    10381 ttcatcacca ccagcgcatc tttttcgccg gtttctttct gcgcagaagc cagacggtct
    10441 ttatacttct tggagtcacg aaacttcagc acatctttcg gctcaagctc gctacccagc
    10501 tccacaaggc ttccttcatc taacaggcta tgcaggcgat tacgcgctgt catacgcatg
    10561 tgatggtcac acttcggaca gacctcaaga ttacgttcca gctcagcgcg gtataaaacc
    10621 tgaccgcagc tatcacactt agtccacacc ccttcaggaa tgctcgcctt gcgggtggga
    10681 gtaatgttgc ttttaattcg ttcaatccag ctcattaggg acctttctgt ctgaacctgg
    10741 ttcgatgcca gttttatctt tggggacgca taatgccatt tttgccccca acagaccatg
    10801 aatgttgcac attaaaacat aacagcccga aactttggat aaaaaagtgg tcgaaccgcg
    10861 gagttacttt ttattttgcg gcgcgtgccg cagcgcgttt gtgacgaata aattcgaaaa
    10921 ccccaggcaa tattgaaaca aaaataatgc caacaatcat cagcttaagg ttgctctgaa
    10981 tgaaggggag cgtgccgaag aaataacccg cgtaggtaaa aatcagtacc cacaacagtg
    11041 cgccgatcac gttataagcg gcgaaatgac ggtacgacat gtggcccatt cccgcaacaa
    11101 acggcgcgaa cgttctgacg atcggtacaa aacgggcgag aataatcgtt ttgccgccat
    11161 gtctctcgta aaactgatga gtcttatcaa gataactgca acgaaagatt ttcgaatccg
    11221 ggttactgaa cagtttgtca ccaaataacc gtccaatggt atagttcact gcatcaccga
    11281 caatagcggc aatcaacata agcaccacca tcatatggac attgagatcg ttagtttcca
    11341 gcgacgccaa tgcaccagca acaaacagca gcgaatcacc aggcaggaat ggcgttacca
    11401 ccagccccgt ttcgcagaac agaatcaaaa acagaatggc ataaacccag acgccgtact
    11461 ccgcgaccag ctctgccaga tgcacgtcaa tgtgcaggat aaaatcgatg aggaaataaa
    11521 tcaggtccat atttgcctat gccttgtact cgtcatcttt caggctgtaa ctacgttggc
    11581 tacagcctga aatgttccga gcattattct cgttagtccg ccagaaatag cgggcccatt
    11641 ggcggttttg gaagatcata ccggtcaggg taatccaccg cgaccagata cagcccttcc
    11701 gcttttgccg ttgctgccgc cagcgttctg tcctttgccg ccagcaactc tgctatccag
    11761 ctctccggct ggttgtgggc accgacttcc atcaggctgc cgacaatatt cctgaccata
    11821 tgatgtacaa aggcattcgc tttgatatct accaccacat aaggaccgtg acgcgtgaca
    11881 ttaatatgca taacgttgcg ccacggggtt cgggactggc actgcaccgc acggaacgag
    11941 gtgaaatcat tctcgcccag caagcattgc gcagcccgat gcatccgttc agcgtccagc
    12001 ggttcgtaaa aatgggttac ccctttactc agtaccgccg ggcgcagccg atgattgtag
    12061 atgatgtagc gataacggcg agccgtggcg ctaaatcggg catgaaaatc atcaggtaca
    12121 gctttaaccc aacgcacggc gatgtcacca ggtaaattcg catttacgcc caaggtccac
    12181 gccgcgtctt tgcgctgcgc ggttgtttcg aaatgcacca cctgcccggt accgtgtacc
    12241 cctgcgtcag tacgcccggc gcagaagacg gtgatgggtt cgttcgccac ctgggagagc
    12301 gccttttcca gcttctcctg cacactgcgg acttcattct gccgttgcca gccgtaatac
    12361 ttactgccgt cgtactcaat gcccagcgca attttataaa ctggcagttg ttgctggtcg
    12421 gacattagta cagatactcc tgcaccagtt tctcggcgat ttttactgcc atcagcgcgc
    12481 cgccaaagcg aacgttatcg gccaccgacc agaactggac ttgctccggc ataccgtagt
    12541 cattacgcac gcagccaaca gaaagatgcg gcgtacccga agcatcccct acctgagtcg
    12601 ggaattcgtt ctcttcagag agcacaatat cttcgccctg agcaaacgca tcacgcgctt
    12661 cttctgccgc cagcggacgc agtgcttcaa agttgaccat ctgggcatga ccgtagaata
    12721 ccggtgcctg gacgacgctt gccgaaatca tcagcccttc gtcctgcagg attttgcgta
    12781 cttcgtcaac gatacgacgt tcttcacgca cgctaccttc gctatccggc aacaacggca
    12841 gcatattgaa cgccagttga cgaccgaaga aatcttcttc gtcaatcgga atgccgttga
    12901 gcaatttcgc actctgcccc gctaacgcat cgaccgcttt tttgccctgg gcggaggctg
    12961 aaatcaggct ggtaacactg atacgcgaca aaccgccctg atcgattaac ggtttcagtg
    13021 ccgccagcag ctggctggtc agactgtctg gtacggcgat gacattccgg ttgcggtaat
    13081 cggtcagtac aaacgggttt acttccggca ccaccagcgg tacgtcgggt tcgagagcaa
    13141 acagtccgct gctgtcgatc accaggcaac ctgagttggt cgcttcttca acccaggcag
    13201 cggtagcttc tttgcctgcg acaaaaaatg ccagctgcgc ctgcgtccag tcgaattcag
    13261 cggcatcctg cacggtgatt gttttaccac caaagcgcag ttgttcgcct gcgctttcgt
    13321 tacgtgccag tgcataaatt tccccaaccg ggaactgacg ttcagccagc gtttcaagca
    13381 gggcttcgcc cacagcgcca gttgcgccca ggacggcaat gttccagcct tcagacatgg
    13441 tggtttactc cagaaatagc aaagctccct gccaatgtta cagcagagag catgaagaag
    13501 agattaacgt gccggatgat gaacggcgtt aaaacccagt ttacacagca atgatgccgc
    13561 actggcgtca tcacaaatta catacagaga tgaccattca cggcgctcaa gatagttttt
    13621 gcgcagttta tcgaactcac ccggtatccc ggcgacttta cgcagcggtg cgtcatcgcg
    13681 gcgcacatca tacaccaaat gcaccagcct tttcagcgtc ggttgatcga gcgggccatg
    13741 cagcgtaatg cgaccaaact ctggcgcggg cagtaatgta tccagcgcaa cgtgctgttc
    13801 atgcccaata aacttgctat aggcttcaaa cacttgcgta gtaccgcgtg ctttaccttc
    13861 cagggtataa cctgcgatat gcggcgtgcc gatatccact tttgtcagca actccacgtt
    13921 aagttccggt tcgccttccc agacatccag cactacgctt aacttctggc cttcattcag
    13981 gcaggtcagc aacgcagtat tatcgacgac tgcgccacgg caagcgttaa tcagaatcgc
    14041 tcccggcttc aggctacgga tcagtttttc atccgccaga tgcagcgttt tgtacggccc
    14101 atctttgaag agtggcgtat ggaaagtcag aatatccgca tgctgaacta attcatccag
    14161 cgagcggaaa tcaccctcat ccccacggtc agcgcgaggc ggatcgcaaa gcaatgtttt
    14221 aatccctaac gcttccagtc gcgcctgcaa tcgacgtcca acgttaccaa cgcccacgat
    14281 ccccaccgta cggtcgtgca gtgaaaatcc atcgcgttcg gcaagcatca gtagtgagga
    14341 gaaaacatat tccaccaccg caatcgcatt acagccaggt gcagcggaaa aaccaattcc
    14401 cgcctgcttc aaccatgctt catcgacatg gtcggtccca gcagtggcag tgccaacaaa
    14461 tttaatgggt tttcctgcca gcaaagattc attcactttc gtgaccgaac gcaccatcag
    14521 cgcatccgcg tctgccagtt gagcgacggg gattggacgc ccgggaaccg cggtcacctc
    14581 acccaaacgg ctaaataagt cgcgggcata aggcatattt tcatcaacaa ggattttcac
    14641 gtttgtgtta cctgtatgag acgagagtta accggacaag tgtgccataa tctcgcggcc
    14701 aggcatactt gcgaagattt caggtataag gatacgtaat gatacaacct atttccggcc
    14761 ctcctcctgg gcaaccacca ggtcagggag ataacctgcc gtctggcgcg ggcaatcagc
    14821 ctttatccag tcagcaacgt acttcgctgg aaagcttaat gacgaaagtg acctcactga
    14881 cgcaacagca aagagcagaa ctgtgggcgg gtatcaggca cgatattggt ctgtcgggag
    14941 attcaccgct gctttcgcgt cacttccctg ccgctgagca taatctggcg caacgtctgc
    15001 tggccgcgca aaaaagccat tctgcccgcc agcttttagc gcaattaggg gagtatttac
    15061 gtctggggaa taatcgtcag gcggtcacgg attatatccg tcataacttt ggtcagacgc
    15121 cgctgaatca gctctcaccg gagcaattaa aaaccattct caccctattg caggaaggga
    15181 agatggttat tccgcaaccg cagcagcgcg aggcgaccga ccgtccttta ttaccggcgg
    15241 agcacaatgc gctaaaacag ctggtgacca aacttacggc ggcaacgggg gaacccagca
    15301 aacagatctg gcaatcgatg ctggaacttt ccggggtgaa agatggcgag ttaattccag
    15361 cgaaactgtt taaccatctg gtgacctggc tacaggcgcg tcagacgcta agccagcaaa
    15421 atacgccgac gctggaatca ctacagatgg cgctaaaaca acctttagat gccagtgaac
    15481 tggcggcgtt atcggcatat atccagcaaa aatatggcct ttctgcgcaa tcatcgcttt
    15541 cttctgccca ggccgaggat attcttaatc agctttatca acggcgggtt aaagggattg
    15601 atccgcgtga tatgcaaccg ctgcttaatc cttttccacc gatgatggac acgttgcaaa
    15661 atatggcaac gcgtcccgtg ctgtggatac tgttagtcgc gattatcctg atgctggtct
    15721 ggctggttcg ttaaccccga cgaaatgaca gtatcgtgac aataataccc agcaccgcag
    15781 agatcgcccc ggcaagaaat accgaagagt aaccaaacgt ggtcgccagc attcccgcca
    15841 gcggcccgga gacgccgagg gcgatatcct gaaacgcggc gtaaccgccc agtgcggtgc
    15901 cgcgaacttg tgaggggacg cgtttaacca cctccacgcc cagcgcagga aagataagcg
    15961 aacatccggc tccggttaac gccgcgcccg ctaatgcgac ccatgcacct ggggcttgcc
    16021 agagcagcaa caagcccacc gtttctacaa gcagagagac aatcgccact ttcacgccgc
    16081 caaaacggtc cggcatccag ccaaacatga cgcgcatcac gacaaatgcg ccgccaaacg
    16141 cggtaagagt aaagcccgcc atcgcccatc ctttgctggc aaagtagagc gaaacgaaag
    16201 tcccgataac cgcaaaacca acgccttgta gtgccagccc taaccctggt ttccagataa
    16261 gcccgacaac gctccacagc gatggacgtt ctcccgccag ggccggtact ttgcgcactg
    16321 tgccgttaca ggcccacgcc agtaagggta ataccattgt ggtgatcgcc agtgcggcaa
    16381 aaccgtaatg gctatgaatc aacaggccaa gcggcgcacc aacagcgagg gcaccgtaaa
    16441 tcgccattcc gttccatgac atcactttgc cagagtgttt tgcccctacg atgcctaatc
    16501 cccaggtcag agcgcctgtc agtaactggc tttcaccaaa gccaagaatc aaacgcccga
    16561 cgaccaacag ggcaaatttc aacggtgcgg agacaggcaa aatcgccgcc agcagcaacg
    16621 cgccgccagc cagaccacaa gctaacatcc cctgaagcgc cgaacgtttt gcaccatatt
    16681 gatcggccag tcgcccggca tagccacgcg tcagcaccgt agccagaaac tgaatcccga
    16741 cggcaatccc gaccatggta ttgccatagc ccagatcatg atgaacaaac agcgggataa
    16801 ccggcaacgg cagccctacg gtcatgtagg tgagaaaaac cgcaaaagcg atgcggaaga
    16861 gcgaaaaatt ggcagaagat cgtgtttcgg tttggcttac agcagtcatg cattactcca
    16921 gaatgcagcg caaggcgagg agtatccccg tctcatctct ctggtttcag ggttacagtg
    16981 cgttggcagg atttaacgcg tacgtctttt cagaaggaaa tcgacaaagc gggaagtttg
    17041 cctggaactg gcggcgattg tcaatgatgt gaaaaaggga accatcaggt tcccttttgc
    17101 gttagtgccg gaggccgcat tggcgcgtaa cgtcggatgc gacgctggcg cgtcttatcc
    17161 gacctactcc gactactccg actactccga cctactgcga attaatcttt cagcttgcgc
    17221 attaccagcg tggcgttggt gccgccgaag ccgaagctgt tagacataac ggtggtcagt
    17281 tcgcgatcgg tcgtttcggt cacgatgttc agacctgccg cctgctcgtc cagctcttca
    17341 atgttgatgc tcggggcgat aaagccgtgt tccagcatca gcagagagta gatagcttcc
    17401 tgtacgccag cagcgcccag agagtgaccg gtcatggctt tggttgcaga aatcgccggg
    17461 ctcttatcgc cgaacacttc acggatagct gccagttctt tcacgtcgcc aaccggagtc
    17521 gaagtaccat gagagttcag gtaatcgatt ggggtatcaa cgccgtgcat cgccatcttc
    17581 atgcagcgta ctgcgccttc gccagacgga gcaaccatgt ctgcaccatc agaggttgcg
    17641 ccgtagccaa cgatttcagc atagatgtga gcaccacgcg ccagcgcgtg ttccagctct
    17701 tcaaccacta ccataccgcc gccgccagcg ataacgaaac cgtcacggtg agcgtcgtaa
    17761 gtacgggagg ctttttccgg ggtgtcgttg tatttagtag acagcgcacc catcgcgtcg
    17821 aattcgcagg ccatttccca gcacagctct tcgccgccgc cagcaaacac gatgtcctgt
    17881 ttgcccagtt ggatctgctc tactgcgtta ccgatacagt gtgcggaagt cgcacacgcg
    17941 gagctgatgg agtagttaac gccatgaatt ttaaacggcg tggcgaggca ggcagaaacg
    18001 ccggatgcca tcgctttggt gaccacatac gggccaaccg ctttcaggcc gcgcgggccg
    18061 cgcattgcgt cagcgccgaa tacctggaaa cgcggggaac cgccgccaga acctgcaatc
    18121 aggccaacgc gtgggttatt ctggtaagct tccggagaaa ggcccgtatc tgcgattgcc
    18181 tgctccatag aaaggaatgc ataaatggat gcgtcgctca taaagcgcac aactttgcgg
    18241 tcaatgaggc cagtggtatc cagttttacg ttgccccaga cgtggctacg catgccggaa
    18301 tccttcagct cctgagagaa agtgatccct gaacgtcctt cacgcagaga tgccaggact
    18361 tcctgctggt tattaccgat gctggaaaca atgcccaggc cagtaatcac tgcacgtttc
    18421 attcaatacc tctgtaagtc gcacatagag taagtttcga atgcacaata gcgtacactt
    18481 gtacgccgaa caagtccgat cagccattta atagagaaat ttgcgcagcc ttacacacat
    18541 cgctaagatc gagccaccgc ctgtaagacg agtaacttac gtgaaacact actccataca
    18601 acctgccaac ctcgaattta atgctgaggg tacacctgtt tcccgagatt ttgacgatgt
    18661 ctatttttcc aacgataacg ggctggaaga gacgcgttat gtttttctgg gaggcaacca
    18721 attagaggta cgctttcctg agcatccaca tcctctgttt gtggtagcag agagcggctt
    18781 aggcaccgga ttaaacttcc tgacgctatg gcaggcattt gatcagtttc gcgaagcgca
    18841 tccgcaagcg caattacaac gcttacattt cattagtttt gagaaatttc ccctcacccg
    18901 tgcggattta gccttagcgc atcaacactg gccggaactg gctccgtggg cagaacaact
    18961 tcaggcgcag tggccaatgc ccttgcccgg ttgccatcgt ttattgctcg atgaaggccg
    19021 cgtgacgctg gatttatggt ttggcgatat taacgaactg accagccaac tggacgattc
    19081 gctaaatcaa aaagtagatg cctggtttct ggacggcttt gcgccagcga aaaacccgga
    19141 tatgtggacg caaaatctgt ttaacgccat ggcaaggttg gcgcgtccgg gcggcacgct
    19201 ggcgacattt acgtctgccg gttttgtccg ccgcggtttg caggacgccg gattcacgat
    19261 gcaaaaacgt aagggctttg ggcgcaaacg ggaaatgctt tgcggggtga tggaacagac
    19321 attaccgctc ccctgctccg cgccgtggtt taaccgcacg ggcagcagca aacgggaagc
    19381 ggcgattatc ggcggtggta ttgcctgcgc gttgttgtcg ctggcgctat tacggcgcgg
    19441 ctggcaggta acgctttatt gcgcggatga ggcccccgca ctgggtgctt ccggcaatcg
    19501 ccagggggcg ctgtatccgt tattaagcaa acacgatgag gcgctaaacc gctttttctc
    19561 taatgcgttt acttttgctc gtcggtttta cgaccaatta cccgttaaat ttgatcatga
    19621 ctggtgcggc gtcacgcagt taggctggga tgagaaaagc cagcataaaa tcgcacagat
    19681 gttgtcaatg gatttacccg cagaactggc tgtagccgtt gaggcaaatg cggttgaaca
    19741 aattacgggc gttgcgacaa attgcagcgg cattacttat ccgcaaggtg gttggctgtg
    19801 cccagcagaa ctgacccgta atgtgctgga actggcgcaa cagcagggtt tgcagattta
    19861 ttatcaatat cagttacaga atttatcccg taaggatgac tgttggttgt tgaattttgc
    19921 aggagatcag caagcaacac acagcgtagt ggtactggcg aacgggcatc aaatcagccg
    19981 attcagccaa acgtcgactc tcccggtgta ttcggttgcc gggcaggtca gccatattcc
    20041 gacaacgccg gaattggcag agctgaagca ggtgctgtgt tatgacggtt atctcacgcc
    20101 acaaaatccg gcgaatcaac atcattgtat tggtgccagt tatcatcgcg gcagcgaaga
    20161 tacggcgtac agtgaggacg atcagcagca gaatcgccag cggttgattg attgtttccc
    20221 gcaggcacag tgggcaaaag aggttgatgt cagtgataaa gaggcgcgct gcggtgtgcg
    20281 ttgtgccacc cgcgatcatc tgccaatggt aggcaatgtt cccgattatg aggcaacact
    20341 cgtggaatat gcgtcgttgg cggagcagaa agatgaggcg gtaagcgcgc cggtttttga
    20401 cgatctcttt atgtttgcgg ctttaggttc tcgcggtttg tgttctgccc cgctgtgtgc
    20461 cgagattctg gcggcgcaga tgagcgacga accgattccg atggatgcca gtacgctggc
    20521 ggcgttaaac ccgaatcggt tatgggtgcg gaaattgttg aagggtaaag cggttaaggc
    20581 ggggtaatct gctctcgcag tgtttgccgg atgcggcgtg aacgccttat ccgacctacg
    20641 tgtgacgtgt aggcctgata agacgcgata agcgtcgcat caggcatggt gctccagacg
    20701 ccgcaactta ctgctgtgac gcctgctgaa acaggttttc ccacatatcg gtcaccagcg
    20761 cctggtcacg cggcgacaat tcaccggcac caatggcttt ttccagactc tggctaacgg
    20821 tcgtatgcac cgcctgagcg gagtggtcat caccactttc cagttctgcg atggctaatg
    20881 tcaggtggcc acgcaaatac ccactggcaa acaactcatc atcactggca tggtcaatca
    20941 tgccgtcgat taatgccaga atgcgtgatt caaactccgc gatcatcttc tttcctcatt
    21001 gtaaaacgtg gcaccggctt cagttgagcg cttccggcca cgggaactgt tccgccgtaa
    21061 gttccagcgt gtgataataa ttttgtagtg ctttaatgaa gcgtgccgga cgctcgggaa
    21121 tgccatttgt cagataatcc atcacctgcg catgtacccg ccgttgaaac accacacgat
    21181 ccggttcgaa gtcgccttcc agattgtcgc aactgacgtt aaacggatat cccgccgcca
    21241 cacagaacaa ccagtcgagt gcctgcggct tcacttcaac atcttcaaac tggctttgcg
    21301 tttgggcatc acgcccatcc gggcaatacc agtagccgaa atcaaccagc tcacggcgcg
    21361 cttttccggc aatacaccag tgcgaaatct catgaattgc gctggcataa aagccgtggg
    21421 caaagacaat tcggttatac ggtacttccg catcagcagg aagatagatc ggttcgtcgt
    21481 cgcctttaat cagacgggta ttaaattcat cggcaaagca gctattaaaa atttcaatca
    21541 actgctcata gtggtgtgta ctgttcatta gttcatcccc aaccagtgga ggatctcctg
    21601 tccgtggcta tcgtaaagta atttggcact catcaccgcc gagacgataa cgatcatcgg
    21661 gcggatcagt ttttgtcctt tgctcagcac cagtcttgaa cccatgcgcg cgccgaggaa
    21721 ctgccccacc agcatgacaa agcccgtcgc ccaaatcact ttgccgccga gaataaacag
    21781 cagcagaccg ccaatgtttg acgttgcgtt gagtaatttg gcgtgagccg tggctttggc
    21841 gaggttgaat ccgcacagcg taacgaaggc cagcgcgtaa aacgatccgg cagccgggcc
    21901 aaagaatccg tcataaaaac cgacgcagcc accggcaatt aacgcgaagg gtaaaccgta
    21961 catccggcgc tggcgatctt cttcacccag ctttggcatc agcaagaaat agaggccgat
    22021 acaaattacc agaatgggca aaatctgccg taagacatca gcctgaacgt attgcaccag
    22081 cagtgcgccg ctcattgagc cgacaaaggt catggcgata ttgagtttct gatcgcttaa
    22141 actaaccact ttgcggcgaa taaagtagat agtggcggaa atagagccgc cgcaggcttg
    22201 cagtttattg gttgccagcg cgttagcggg agacattccc gcagccatca atgccggaat
    22261 ggtgagtaac ccaccgccac cggcaatcga gtcgataaat cccgccagca tggcgacaaa
    22321 aaagagaact cccagcaaca gcggggaaac cataaacagg ctattaaacg tttccattag
    22381 atcacgtgct catccagtag cgcctggcag gaaggcggca acggaggcgg tgtcttcttc
    22441 tcaggctttg ttgttcctgg ttttggaggt gcaaaccagc tttgcagttc tgccccgcaa
    22501 ccatcgcctg gtggcggtaa aggttgatct tcacactcca gactatcggc agggcaacgt
    22561 aatcgtacat gcatatgcgc gcgatgctgg aaccagggtc gcactttgcg caaccagtcg
    22621 cgatcggtgc ccgcatcaag gcaaagttgt tgtttaatcg ccggattaac aaaaatgcgc
    22681 gtgacgtctt tgtcctgggc ggcgagtttg atcaagctga aaatttctgg cttccacagc
    22741 gtggagacaa cgtgtttacc gtcgcgggaa actaagtcca gtgcttgcgg gcgcaagagc
    22801 tgcgcggagg tccagcgagt tttcggcagt tgcagaaaga tatcgacatc cagtccggtc
    22861 tggtggctgg catgaccgcc gttgaaacgc ccaccagcgg gcatccccat atcgccaatc
    22921 agcaccgtac ccatgcccag attgctcacc tggctactca gacgctggat aaacatcacc
    22981 agatccgggt gaccgaaata gcgacgctga tcggtacgca tgacctgata atgttcggac
    23041 tgtatcggca acgtgtcagc gccgacaata cagccattag aaaaactgcc tatcgattgt
    23101 gcgctacccg gcacaggttg ggttattttt tgccacggcg tcgctgccaa gctagcgcta
    23161 ctggcaagca gagccagcag cgcaatcgcg gttttgttca ttttttacca gcgtggaata
    23221 tcagtcttca catcggcatt ttgcgcccgc tgccgtaaca ggtgatccat taaaacgatc
    23281 gccagcatcg cttcagcgat cggcactgca cggatcccga cacagggatc gtgacggcct
    23341 ttggtgatca tctcaacttc ttcgccaaag cggttaatag tgcgccccgg cacggtaatg
    23401 ctggaggtcg gtttcagcgc catatgagca atgatttgct gcccgctgct gataccgccg
    23461 agaatgccgc ccgcatggtt gctctggaaa ccgtctttgg tgatttcgtc gcggttctgg
    23521 ctgccgcgca gcgccactac gtcaaagccg tcgccaattt ccacgccttt caccgcgttg
    23581 atgctcatca gcgcatgggc gatgtcggca tccaggcggt caaataccgg ctcgccaagt
    23641 ccggcgggga cgccactggc aacaacggtg actttcgcgc cgatggagtc gccctctttt
    23701 ttcagcgcgc gcatcagttc atctaacgcg tcgattttgt ccggatccgg gcagaagaac
    23761 ggattttgtt caaccagcga ccagtctttg atttccagcg gaatgtcgcc catctgggtc
    23821 aagcagccgc ggatttcaat accaaatttc tcggcgagat attttttggc aatcgcccct
    23881 gccgccacgc gcatggcagt ttcgcgggcg gaagaacgtc caccgccgcg ataatcgcgc
    23941 agaccgtatt tttgttcgta ggtgtaatca gcatggcctg ggcggaaaac gtctttaatt
    24001 gcgctgtaat cctgagagcg ctggtcagtg ttttcgatca acaagccaat gctggtgcca
    24061 gtagtaacgc cttcaaaaac accggagaga attttgacct gatccggctc gcggcgctgg
    24121 gtggtatagc gcgatgtccc agggcgacga cggtcgaggt catgttgcag gtccgcttcc
    24181 gtcagcagaa tgcctggcgg aacaccatcg acgatgcagc cgagcgccag cccatgcgat
    24241 tcgccgaagg tggttacgcg aaagagttgt ccaattgtgt ttccagccat cacggctccg
    24301 ttattgttgt gtttgcgtgt ttacttaatc tttataaatc gcgaaatatt cacgggccgc
    24361 cagcagctgc tctttggtga gcataaacac accatcgccg ccgttatcaa actccagcca
    24421 ggtgaacgga acatccggat attgttccat aagatgtacc atgctgttgc cgacttcaca
    24481 aatcaacacg ccatcatcag caaggtaatc tgccgcgttt ccaagaatgc gacgcgtcag
    24541 tttaaggccg tcggtgccag atgccaggcc cagttccggc tcgtgacggt attcgtttgg
    24601 caggtcggac atatcttccg cgtcgacata cggcgggtta gtgacaatca gatcgtactg
    24661 cactttcggc aagtcgcgga acagatcgga acgaatcgga atgacgttgt ggatcagacc
    24721 gtgttcttcg atgttctgtt cagcaaccgc cagcgcgtcg ggagagatat ccaccgcgtc
    24781 gacttctgca tccgggaagg cataagcaca ggcaatggcg atgcagccgc taccggtaca
    24841 catatctaaa atatgctgcg gttgtttgcc gatgagtccg gcaaatttat tgttgatcag
    24901 ttcaccaatc ggcgagcgcg gcaccagcac gcgttcatcg acgtaaaatt catgaccgca
    24961 gaaccaggct ttgttggtca ggtaagccac cggaatgcgc tcgttgacgc ggcggatcac
    25021 gcgttcaaca atacgatgtt tttcgctgga ggtcagacgc gcggtgcgca tatcttccgg
    25081 gatatccagc ggcaggtaga gcgatggtaa caccagctgt acggcttcat cccacgggtt
    25141 atcggtgccg tgaccgtacc agatatttgc cgcgctgaag cggctcactg accagcgcaa
    25201 catgtcctga atggtttgca gctcatttac tgcttcatca acgaaaattt tatccacgta
    25261 ttcctccagg gcatgatcgc aataatttcg gcggctagtt tgccatgaag atgacgataa
    25321 atcagcattc acgcgcggtg agtgaggaaa aatacgttta aaacgatcga ttgtgctacg
    25381 agtcgggtaa actgtaggaa aattagaaat agagacagat aaatgaaaaa gaaaacaaca
    25441 cttagcgagg aggaccaggc tctgtttcgc cagttgatgg cggggactcg caagattaag
    25501 caggacacga ttgtccaccg accgcagcgt aaaaaaatca gcgaagtgcc ggtgaaacgc
    25561 ttgatccagg agcaggctga tgccagccat tatttctccg atgagtttca gccgttatta
    25621 aataccgaag gtccggtgaa atatgttcgc ccggatgtca gccatttcga ggcgaagaaa
    25681 ctgcgccgcg gcgattattc accggaattg tttttggatt tacacggtct gacgcagctg
    25741 caggccaagc aggaactggg cgcgttgatt gccgcctgtc gccgcgaaca tgtgttttgt
    25801 gcctgcgtga tgcatgggca cgggaagcat attttgaagc aacaaacacc gctgtggctg
    25861 gcacaacatc cgcatgtgat ggcatttcac caggcaccga aagagtacgg cggtgatgcg
    25921 gctttgttgg tgttgattga agtggaagag tggttgccgc cggagttgcc ctgaggagtt
    25981 gagcgtgttg tggcaggagc gaatgaccct gccaggtgag aaaaggtgcg ctaatacata
    26041 ttcagtatgt aagtgaatcg gcaggtagaa tctatgggct gtcgagatgt cgtgtccacg
    26101 cgtagcttca tatcatgcag ttgcctggac gtaatcggtt gcggctcagg cgtcaccgtc
    26161 actttggcat tatcacagcc ggaagtcgag aaggtcatct gctgtgcgat aaaacggcag
    26221 tagacaccac gctcatcaaa attattcccg ttacacagtt tgccattttc catcaggaaa
    26281 gtgggcagtg tttgctcaat aacaccacct gttgactgca acctgacgac tttgttatgt
    26341 acaacataat tttcattcca ggaaacatca tacggtgcca ggggcaccgc cggacatgaa
    26401 gaactcacct tcgttgggcc aatatagtca ggaaaatcat catcatacgt tttagcgaag
    26461 ggatctctac tcttaacaaa cgacgacaca atccacggac aaccatgtaa attcccatcg
    26521 taataaacaa acatctttaa ttcattacat gtccatcccg ttttggtctg gctatcatac
    26581 tgctctaatc caggacaggc tgacatggat accctgctgt ccgaaatttt cgacatagat
    26641 ggttgagtag aactatcgcc agtccacgaa actaaatccg gctgtgaatt gggcatgaat
    26701 gtagccttaa atatagcgta attaactgaa tctggcgtcg ctataatcag atgaaactca
    26761 aactctgtag actggccccc tgaatctcca gacaaccagt atcacttaaa
//
LOCUS       DAJVUN010000044        25288 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.044, whole genome shotgun sequence.
ACCESSION   DAJVUN010000044 DAJVUN010000000
VERSION     DAJVUN010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25288
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.044"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(221..691)
                     /locus_tag="OQQ76_001505"
     CDS             complement(221..691)
                     /locus_tag="OQQ76_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaC family protein"
                     /protein_id="HCS1968051.1"
                     /translation="MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYV
                     AFFATLAVMLQSETLSGSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGE
                     WYNTRFVPAALVEAILNSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS"
     gene            complement(807..1358)
                     /gene="maa"
                     /locus_tag="OQQ76_001506"
     CDS             complement(807..1358)
                     /gene="maa"
                     /locus_tag="OQQ76_001506"
                     /EC_number="2.3.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HCS1968052.1"
                     /translation="MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHT
                     LRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML
                     APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGA
                     VVTKGVPDNVVVGGNPARIIKKL"
     gene            complement(1530..1748)
                     /gene="hha"
                     /locus_tag="OQQ76_001507"
     CDS             complement(1530..1748)
                     /gene="hha"
                     /locus_tag="OQQ76_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1968053.1"
                     /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY
                     SAADHRLAELTMNKLYDKIPSSVWKFIR"
     gene            complement(1774..2148)
                     /gene="tomB"
                     /locus_tag="OQQ76_001508"
     CDS             complement(1774..2148)
                     /gene="tomB"
                     /locus_tag="OQQ76_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hha toxicity modulator TomB"
                     /protein_id="HCS1968054.1"
                     /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNYGWVNDPTSAI
                     NLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRK
                     SGNRLFRCFVNATKENPASLSC"
     gene            complement(2694..5843)
                     /locus_tag="OQQ76_001509"
     CDS             complement(2694..5843)
                     /locus_tag="OQQ76_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS1968055.1"
                     /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT
                     ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI
                     AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA
                     NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ
                     LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD
                     IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK
                     ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS
                     AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG
                     KKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD
                     EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT
                     GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF
                     ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG
                     VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM
                     VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG
                     YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL
                     AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL
                     RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR
                     RRFSRKNEDIEHSHTVDHH"
     gene            complement(5866..7059)
                     /gene="acrA"
                     /locus_tag="OQQ76_001510"
     CDS             complement(5866..7059)
                     /gene="acrA"
                     /locus_tag="OQQ76_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrA"
                     /protein_id="HCS1968056.1"
                     /translation="MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVT
                     VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ
                     ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA
                     KAAVETARINLAYTKVTAPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQ
                     SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL
                     RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET
                     RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP
                     EQSKS"
     gene            7201..7848
                     /gene="acrR"
                     /locus_tag="OQQ76_001511"
     CDS             7201..7848
                     /gene="acrR"
                     /locus_tag="OQQ76_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrR"
                     /protein_id="HCS1968057.1"
                     /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT
                     RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT
                     EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT
                     RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE"
     gene            7976..11338
                     /gene="mscK"
                     /locus_tag="OQQ76_001512"
     CDS             7976..11338
                     /gene="mscK"
                     /locus_tag="OQQ76_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HCS1968058.1"
                     /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK
                     ADLQAQLDSLNKQKDLSAQDKLEQQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM
                     RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS
                     LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ
                     RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD
                     EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE
                     QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF
                     VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV
                     SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWEKAWPAVFIAFL
                     AGLPLLLIAGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI
                     ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS
                     HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES
                     WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSGRWIETVYLVIIWNLLYQ
                     TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM
                     FALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA
                     WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW
                     LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT
                     DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP
                     RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF
                     NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG"
     gene            complement(11550..11711)
                     /gene="rsmS"
                     /locus_tag="OQQ76_001513"
     CDS             complement(11550..11711)
                     /gene="rsmS"
                     /locus_tag="OQQ76_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pleiotropic regulatory protein RsmS"
                     /protein_id="HCS1968059.1"
                     /translation="MSLENAPDDVKLAVDLIVLLEENQIPARTVLRALDIVKRDYEKK
                     LTRDDEAEK"
     gene            complement(11725..12252)
                     /gene="priC"
                     /locus_tag="OQQ76_001514"
     CDS             complement(11725..12252)
                     /gene="priC"
                     /locus_tag="OQQ76_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N''"
                     /protein_id="HCS1968060.1"
                     /translation="MKTALLLEKLEGQLATLRQRCAPVAQFATLSARFDRHLFQTRAT
                     TLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP
                     PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR
                     HALEKIENRLARLTR"
     gene            12322..12699
                     /locus_tag="OQQ76_001515"
                     /pseudo
     CDS             12322..12699
                     /locus_tag="OQQ76_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308548.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 family protein"
     gene            12852..13403
                     /gene="apt"
                     /locus_tag="OQQ76_001516"
     CDS             12852..13403
                     /gene="apt"
                     /locus_tag="OQQ76_001516"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HCS1968061.1"
                     /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS
                     IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL
                     EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD
                     LGGEQRLEKQGITSYSLVPFPGH"
     gene            13532..15463
                     /gene="dnaX"
                     /locus_tag="OQQ76_001517"
     CDS             13532..15463
                     /gene="dnaX"
                     /locus_tag="OQQ76_001517"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HCS1968062.1"
                     /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS
                     GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
                     DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ
                     KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL
                     SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI
                     EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI
                     GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVLRQSFAPVAPTAVMTPTQVPPQ
                     PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL
                     ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE
                     LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNR
                     GAQQKLAEALSTLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI
                     QTLRRFFDAELDEESIRPI"
     misc_feature    14796..14860
                     /gene="dnaX"
                     /locus_tag="OQQ76_001517"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00382"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="DnaX frameshifting element; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00382"
     gene            15516..15845
                     /locus_tag="OQQ76_001518"
     CDS             15516..15845
                     /locus_tag="OQQ76_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HCS1968063.1"
                     /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
                     PGFKMPF"
     gene            15845..16450
                     /gene="recR"
                     /locus_tag="OQQ76_001519"
     CDS             15845..16450
                     /gene="recR"
                     /locus_tag="OQQ76_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HCS1968064.1"
                     /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLA
                     QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS
                     GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
                     CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF"
     gene            16560..18434
                     /gene="htpG"
                     /locus_tag="OQQ76_001520"
     CDS             16560..18434
                     /gene="htpG"
                     /locus_tag="OQQ76_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003903109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HCS1968065.1"
                     /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD
                     KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT
                     KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG
                     EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG
                     ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS
                     LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV
                     SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN
                     QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL
                     RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL
                     TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY
                     IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS
                     "
     gene            18615..19259
                     /gene="adk"
                     /locus_tag="OQQ76_001521"
     CDS             18615..19259
                     /gene="adk"
                     /locus_tag="OQQ76_001521"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007706188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HCS1968066.1"
                     /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE
                     LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN
                     VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
                     EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG"
     gene            19391..20353
                     /gene="hemH"
                     /locus_tag="OQQ76_001522"
     CDS             19391..20353
                     /gene="hemH"
                     /locus_tag="OQQ76_001522"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HCS1968067.1"
                     /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL
                     WWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPETPVALGMSY
                     GSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR
                     DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTREL
                     ASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLET
                     LEEIAEQNREVFLGAGGKKYEYIPALNATPEHIEMMANLVAAYR"
     gene            complement(20350..21309)
                     /gene="aes"
                     /locus_tag="OQQ76_001523"
     CDS             complement(20350..21309)
                     /gene="aes"
                     /locus_tag="OQQ76_001523"
                     /EC_number="3.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl esterase"
                     /protein_id="HCS1968068.1"
                     /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPSWPATGTIAEQRQYY
                     TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT
                     HDRIMRLLASYSQCTVIGIDYPLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG
                     FAGDSAGAMLALASALWLRDKQIDCGKIAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ
                     QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLA
                     AHQQPCEFKLYPGTLHVFLHYSRMMKTADEALRDGAQFFTAQL"
     gene            21461..22765
                     /gene="gsk"
                     /locus_tag="OQQ76_001524"
     CDS             21461..22765
                     /gene="gsk"
                     /locus_tag="OQQ76_001524"
                     /EC_number="2.7.1.73"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/guanosine kinase"
                     /protein_id="HCS1968069.1"
                     /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV
                     DIEAKVDDEFIERYGLSAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNY
                     SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG
                     ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK
                     YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD
                     WVDLVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL
                     RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS
                     SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR"
     gene            complement(22898..24574)
                     /locus_tag="OQQ76_001525"
     CDS             complement(22898..24574)
                     /locus_tag="OQQ76_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kef family K(+) transporter"
                     /protein_id="HCS1968070.1"
                     /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG
                     PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLL
                     GMALSAVLGWSLMPGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV
                     MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS
                     AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP
                     LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTA
                     LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA
                     KTKTLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR
                     TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD
                     IEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG"
     gene            complement(24812..>25288)
                     /gene="fsr"
                     /locus_tag="OQQ76_001526"
     CDS             complement(24812..>25288)
                     /gene="fsr"
                     /locus_tag="OQQ76_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS1968071.1"
                     /translation="YYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGR
                     KYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASALSAILVYAQELLPGRIGM
                     VSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD"
BASE COUNT         6334 a         6573 c         6498 g         5883 t
ORIGIN      
        1 caatactgaa agaatcagta ctcccgaaat aaggccgacc agatgtcgtg ttctcaccag
       61 catatcctta ttaacacagt gtagggaaag tatatctgat tgtggaaaaa ggctggcagg
      121 agataaggag gtagagctgg tatttcatga agtgatgggt ggaaacgatc attgtcattt
      181 gaccaagcgc agagctttac gcctggtatg taaccctaac ttaagatgtt gattcggcgc
      241 gagcgagggt aaaaatatcg taaaaagaca gttcaccttt acggacgatc attttttgca
      301 gttgttcctt atgaacatcc gcgacacgcg gagagttcaa gatggcttca accagcgcgg
      361 caggtacaaa gcgcgtgttg taccattcgc cgttatagca aacgcggaaa tccagcacgt
      421 cgatatcttc atagcggtag cgtgggtaga catcgaaaaa gaagaaacca ttaagcagga
      481 taaataatac aaccagtagc cagacagagc ctgacagcgt ttcggactgc aacatcaccg
      541 ccagggtggc aaaaaaagca acgtacatac cgataaacag ccccggatgt ttacggataa
      601 aactgatact aaagcggggt ttgttgtcgc gtttttcgcg ggtattcaga gactcaatcg
      661 tttcggtcag caggcgttgt atttcggtca tcgtttgcct tcgtggtatc tgcaactttc
      721 cagggaacac cctattttaa cgtgggaata gtagagggga agtaacagat ctaccacaat
      781 tttgcataac agttgcgaaa aaccgattac aattttttaa ttattctggc tggattaccg
      841 cccacgacaa cgttgtccgg gacacctttt gtgacaactg cacctgaagc taccacgacg
      901 ttatcaccaa tggtcacacc agggttaatg accgcgcgtc cgccaatcca gacgttatta
      961 ccgatggtga cgggtttccc cagttcagca ccgctattac gtgctacagg gtcgatggga
     1021 tgtgttgccg tgtagatatg aacgcctggt gccaacatac agttatcacc gatgcgaata
     1081 gggcagacat caagcatcac gcaatcgaag ttggcgaaaa aattattgcc gagaaaaatg
     1141 ttatagccat aatcacagcg aaacgttggc tcaatataag cctctgtcac ctgaccgaat
     1201 aaatcagcga gaatttgctg gcgtaatgtg tgctcttccg ccagggaatg attgtatcgg
     1261 tgaataagct gacgagcgcg caggcgatcg cgagataacg tctcatctgc cgagcgatac
     1321 aactcaccag caatcatctt ttctttttct gtgctcatta ctgacctccg gttgctgaaa
     1381 atgcggcaac acagtaagac gaaaagtcag tgaacagaac gttcccatta catctgtgtg
     1441 ataaagatca catagggtat gtcttcatgg tgaaaaagta taaaattctt aataaacagc
     1501 cggttatagc tccgaaagcg aattatttat tagcgaataa atttccatac tgaggaaggg
     1561 atcttgtcgt atagtttatt catggtcaat tcggcgaggc ggtgatctgc ggctgagtaa
     1621 aataccgcca gttcattatc tgataattcg tatttatttt tctcgataac acgctccagc
     1681 gtgtcaattg tctggcaacg acgtaaacgc attaaataat cggttttcgt taaaggtttt
     1741 tcggacatac ttctacccat ggttgtaata attctaacaa gataaactcg caggattctc
     1801 tttcgtcgca ttgacaaaac aacggaatag tcgattacct gacttccgcc atttctgaag
     1861 atcctgcata ttaataccat aactactgaa caacataaag gtgtcatcca gatattcgtc
     1921 gatctgctca atgagcttat tgtcttcatt atacttaatt ttgtaattaa gtgcgaaggt
     1981 cgcaatatgc tcaatcagtt cattcaactg gaggttgatc gccgaggttg ggtcgttaac
     2041 ccagccataa ttgctttctt caaggtttgc aaggcagtca tgatacaggg tttcacagag
     2101 aaacttaagc tgtgcgatat catgtctttt gggtgagtat tcatccataa cgcgtcccct
     2161 tcttagcggt tgaactaacg gacacctttc gggatggaaa aaacttactg acctggactt
     2221 gccctctcgt ttgttagctt aactataagc cactctttgc aggttttcat cgcattatta
     2281 cgaaaaatta caattaggaa ggaatcggga caggacttac tttttcatac tagcactaac
     2341 ccgcagcagg taaaagcagt ttgctcgaac tgttcataac atttcaggat tatcgccaga
     2401 tgaaattggt gacactaata ccaggattgc tctgaatatg acgtaataac cgaggaatga
     2461 ataaagaatt accgcaaata attaagaata gcctctaaat gattatggat tattaaatct
     2521 attagcgcta cttaatataa attaactaac aatcagtatt ttttatgaat tttatccgtg
     2581 gttaatactg gttttcgtat gagatcctga gttggtggtt caattactcc ttaatgttcg
     2641 taggttatgc ataaaaaagg ccgcttgcgc ggccttagtg attacacgtt gtatcaatga
     2701 tgatcgacag tatggctgtg ctcgatatct tcattcttgc ggctaaagcg gcggcgaacc
     2761 accacaaaga ataccggaac gaagaagatt gccagtaccg ttgcggtcac catcccgccc
     2821 attacaccgg tacctactgc gttctgcgcg ccggaaccag caccagtact gataaccagc
     2881 ggcataacgc cgaggataaa cgccagcgag gtcatcagga tcggacgtaa acgcatccgc
     2941 actgcatcaa gcgtcgcttc aatcagacct ttaccttctt tatccatcaa gtctttggcg
     3001 aattcgacga taagtatcgc gttcttcgcc gacaacccaa tggttgtgag caggcctacc
     3061 tggaagtaaa cgtcattggt caggccacgg aaggtggcag ccagcaacgc accgataacc
     3121 cccagcggaa cgaccagcat aacggagaac ggaatcgacc agctctcgta cagcgccgcc
     3181 agacacagga atacgacaat caacgaaatc gcgtacagtg aaggtgcctg gttgccggag
     3241 aggcgttcct gataggacat ccccgtccag tcatagccaa caccggtagg cagtttgctc
     3301 gccagttgtt ccattagctc cattgcttca ccggtacttt tacccggtgc cgcctggcct
     3361 aagatttcca tggatggcag gccattgtaa cgttccagac gcggcgaacc gtactcccaa
     3421 cgagaagagg agaatgccga gaacggcacc atctgaccat cagcagcacg aacataccag
     3481 tcgccgatat catccggcag catacggtat ttcgcttctg acatgacgta aactttcttc
     3541 acacgaccgc ggtcgataaa gtcgttcaca tagctaccgc cccatgcagc gcccagagtg
     3601 gtgttaatgt cgttgataga aacacccagc gcctgcgctt tttcctggtc gatatcaatc
     3661 ttaaactgcg gggtatcttc cagaccgttt ggacgtacgc tggtcaacat atcaggatgc
     3721 tttgctgctt ctgcaagcag ctggttacgc gcctgagtca gtttttcgtg accaaggcca
     3781 gcctggtcaa tcagctcaaa gtcaaagccg gttgcagtac ccagttccac gattgcgggc
     3841 aggttaaagg cgaaaaccat cgcatctttg atttgcgaga aagcgcgtgt tgcacgcatg
     3901 gtaatcgctt caactttgtt ttcttcgccc ggacgatcgg cccagtcctt caaggaaacg
     3961 aacgcaatac cggtattctg accacgtccc gcaaagccga agccgttaac ggcgaacacc
     4021 gactcaacgt tgttcttttc tttggtcaga tagtaatgcg ttacctcatt gagcactttc
     4081 tgcgtacgtt cctgcgttgc acctgctggc agctgaacca tggtcataaa tacgccctgg
     4141 tcctcatctg gcaagaagga gcttggcaga cgcacgaaca gataggccat gccgaccacg
     4201 atgatcagat acagcaccag gtaacgcccc gtactgcgca gaataccgcc tacgctgtcg
     4261 gtgtagtggt gcgtgctctt ctcgaacatg cggttaaacc agccgaagaa gcctttttta
     4321 ccttccccgt gatcgccttt ggcaatcggt ttcagcatgg tggcacaaag agccggagtc
     4381 aggatcaacg ctaccagtac cgacagcgcc attgctgaaa caatggtaat agagaactga
     4441 cgatagatag caccagtaga accgccaaag aaggccatcg gtacgaatac cgctgacagt
     4501 accatcgcga taccgaccag agcgccctga atctgcccca tcgacttacg ggtagcttct
     4561 tttggcggca aaccttcttc cgccataaca cgctccacgt tttctaccac aacgatagcg
     4621 tcatccacca acaagccgat ggcgagcacc atcccgaaca ttgttagcgt gtttatcgag
     4681 aagccaaagg cggcaaggac ggcaaaggtc ccgagcaata ccaccggtac ggcaatggtc
     4741 ggaatcaacg tcgcgcggaa gttctgcagg aacagataca taaccaggaa cacgaggatg
     4801 atcgcttcga ccagcgtttt aaccacttcg tgaatagaga ttttcacgaa cggcgtggtg
     4861 tcgtacgggt aaacaatttt cagacccgac gggaagaacg gttccatctt cgccagttca
     4921 gcacggattg ccgcagcggt atccagcgca tttgcaccgg tcgccagctt gatccccaga
     4981 ccggaagccg gttggccgtt aaactctgcg atgatgtcgt agttctcacc acccagctca
     5041 atcttcgcca catcacgcag caggacgcgg gaaccatcct gattcacttt cagcaggatt
     5101 ttgccgaact cttcagtaga ggtcagacgc gtctgagcaa taatagaggc gttaagctgt
     5161 tggcctttca ccggcggcgt accaccgagc tgacccgccg caacctgggc gttctgcgct
     5221 ttgatggcgg taatgacatc aaccggcgtt agctggaatt tgttcagctc attcgggttc
     5281 atccagatac gcatcgcgta ctgtgaaccg aacaactgaa catcacccac gcccgacgta
     5341 cggctgatgg catctttcat attcgccgct acgtagtcag agatatcctc ctgcgtcatg
     5401 gtgccatcgg tgttgataac gccgacaacc atcaggaagc tgctggatga tttctcaacg
     5461 ctcacccctt gctgctgaac ttcttgcggc agcaacggca tcgccagctg cagtttgttc
     5521 tgcacctgaa cctgcgcgat atccgcatca gtaccagact caaaggtcag ggtgatctgc
     5581 acggtacccg tggagtcact gttagaggac atgtacatca ggttatcgat accgttcata
     5641 ttctgttcga taacctgtgt caccgtgtcc tgcactgttt tcgcatcagc gccggggtag
     5701 gaggcggaga tcgttactgc cggcggtgca atcgtaggat attgcgccac cggcagtttg
     5761 aggatcgcca gcccccctgc caacatgatg ataatggcga tcacccacgc aaaaatcggg
     5821 cgatcgataa agaaattagg catgtcttaa cggctcctgt ttaagttaag acttggactg
     5881 ttcaggctga gcaccgcttg cggcttgctg gttattatca gcggtaactt cttgtgcttt
     5941 tacctggaca ccaggacgca ctttctgcag cccacttatt actacgcgat cgcctgcttt
     6001 cagaccttct gtcaccagcc acttatcgcc aatagcctgg cttgcaacga tcggacgggt
     6061 ttccactttg tcatccgcgc caactaccag tacggtggca tcaccacgcg gcgtacgggt
     6121 tacgccctgt tgcgggacta aaatagcgtt tggattaagc ccttcttcca gacgtgcgcg
     6181 cacgaacata cccggcagca gagtgtgatc cgggttcggg aagatagcgc gtagggtgat
     6241 agacccagtg gtctgatcaa cggtaacgtc agagaattcc agcgtaccgt cctgcgggaa
     6301 cttaatgccg tcactggtga tcagcgacac tttggctttg ccgttctctt gtttcagcgt
     6361 gccattcgcc agttcctgtt tcaggcgcag gaagtcgttg ctggactggg tcacatcaac
     6421 gtagatcgga tcaagttgct gcacggttgc cagcgcagtc gcctgaccgt tctgtaccaa
     6481 tgcgccttcc gtcacgttcg acttaccaat gcgaccgcta atcggagcgg tgactttggt
     6541 gtaagccaga ttgatccgcg cagtttcaac ggcagctttc gccgcagtta ccgcagcatt
     6601 cgcctgttgc gcatcagcca gagcctgatc gtactcttgc ttactgatgt actgagtacc
     6661 gagcagtttc tgataacgat tcaccgtcaa ttgcgcgata ttggctgcag cctgggcttt
     6721 cgccagatca cctttcgcac tgtcgtatgt cgcctgatag gtcgcgggat caatctgata
     6781 gagagagaca ccagcttcga tgtcgctacc ttctttgaaa ttacgcttca ggataatccc
     6841 gctaacttga ggacgaactt ctgcgatccg gtaggcactg gtgcgacccg gaagctcggt
     6901 tgtgatctgc agaggttcag ttttgactgt tactacgcca acggcgggca tctgctggcc
     6961 accttgttgg gcctgtttgt cgtcacatcc tgttagggct aagctgcctg agagcatcag
     7021 aacgaccgcc agaggcgtaa accctctgtt tttgttcata tgtaaacctc gagtgtccga
     7081 tttcaaattg gtcaatggtc aaaagttaat aaacccattg ctgcgtttat attatcgtcg
     7141 tgctatggta catacattca caaatgtatg taaatctaac gcctgtaaat tcacgaacat
     7201 atggcacgaa aaaccaaaca agaagcgcaa gaaacgcgcc aacacatcct cgatgtggct
     7261 ctacgtcttt tctcacagca gggggtatca tccacctcgc tgggtgagat tgcaaaagca
     7321 gctggcgtta cgcgcggtgc aatctactgg cattttaaag acaagtcgga tttgttcagt
     7381 gagatctggg aactgtcaga atccaatatt ggtgaactag agcttgagta tcaggcaaaa
     7441 ttccctggcg atccactctc agtattaaga gagatattaa ttcatgttct tgaatccacg
     7501 gtgacagaag aacgacgtcg attattgatg gagattatat tccacaaatg cgaatttgtc
     7561 ggagaaatgg ctgttgtgca acaggcacaa cgtaatctct gtctggaaag ttatgaccgc
     7621 atagaacaaa cgttaaaaca ttgtattgaa gcgaaaatgt tgcctgcgga tttaatgacg
     7681 cgtcgggcag caattattat gcgcggctat atttccggcc tgatggaaaa ctggctcttt
     7741 gccccgcaat cttttgatct taaaaaagaa gcccgcgatt acgtcgccat cttactggag
     7801 atgtatctcc tgtgccccac gcttcgtaat cctgccacta acgaataacc ctgaatctga
     7861 ctccaggatt tttcctggac attttcgtcg ttgctattct ggttcactgc gtcgtgatat
     7921 tcttgcggtt tgactttttc aggtcgttct tcaggttcag aaaccttcat tcatcatgac
     7981 tatgttccag tattacaaac gatcacggca ttttgttttt tcagcattta ttgcttttgt
     8041 ttttgtcttg ttatgccaga acacggcgtt tgcgcgggcg tcatcgaatg gtgatctgcc
     8101 gacaaaagcg gacctgcagg cgcaacttga ctcactaaat aaacaaaaag atctttctgc
     8161 tcaggacaaa ctggagcagc aggatctgac agatacatta gccaccctcg ataaaatcga
     8221 tcgcataaaa gaagagacag ttcagctacg gcaaaaagtc gctgaagcgc cggaaaaaat
     8281 gcgccaggcg accgcggcgt taacagcact tagcgatgtc gataacgacg aagaaacgcg
     8341 caaaattctg agtacgcttt cgttgcgcca gctggaaact cgcgttgccc aggcgctgga
     8401 cgatttgcaa aacgcacaaa acgatctggc gtcttataac agccagctgg tttcgttaca
     8461 gacgcagccc gaacgcgtgc aaaatgcgat gtataacgct tcgcagcagc tgcaacaaat
     8521 tcgcagtcgt ctggatggga ctgatgtcgg cgagactgcc ttacgtccca gccagaaagt
     8581 gttaatgcag gctcagcagg cgttgctgaa tgcggagatt gaccagcagc gtaaaagcct
     8641 ggaagggaac accgtcttgc aggatacctt gcaaaagcaa cgtgattacg tgacggcgaa
     8701 cagcgcccgt ctggagcacc agttgcagct gttgcaagaa gcggtaaaca gcaagcgcct
     8761 gactttaact gaaaaaacgg cgcaggaagc cgtctccccg gatgaagccg cgcgtattca
     8821 ggctaatccg ctggtgaaac aggaactgga aattaaccag cagttaagtc agcgtctgat
     8881 taccgcgact gaaaacggta atcagttgat gcagcaaaac attaaagtca aaaactggct
     8941 ggagcgggcg ctgcaatcgg aacgcaatat taaagagcag attgccgtcc tgaagggcag
     9001 cctgctgttg tctcgtatcc tttaccagca acaacaaacg ctgccctcgg cggatgaact
     9061 ggaaaacatg accaaccgca tcgcggattt gcgtctcgaa cagtttgaag ttaaccagca
     9121 gcgtgatgca ctcttccaga gcgatgcgtt cgtcaacaaa ctggaagaag gtcacaccaa
     9181 cgaagtcaac agcgaagttc acgatgcgtt attgcaagtg gttgatatgc gtcgcgaatt
     9241 gctggatcaa ctcaacaaac agttgggtaa ccagctgatg atggccatta acctgcaaat
     9301 caaccagcag cagttaatga gcgtatcgaa aaacctgaaa tccatcctga ctcagcaaat
     9361 cttttgggtg aacagtaacc gtccaatgga ctgggactgg atcaaagcgt tcccgcaaag
     9421 cctgaaagat gaatttaagt cgatgaaaat cacggtgaac tgggaaaaag cctggcctgc
     9481 cgtttttatc gctttcctcg ccggtttgcc gctgctgttg attgccgggc tgatccactg
     9541 gcgtctgggc tggctgaaag cgtatcaaca aaaactggct tccgctgtgg gttccctgcg
     9601 taacgatagc cagctcaaca caccaaaagc gatccttatc gacctgatcc gcgcgctgcc
     9661 ggtgtgcctg attattctcg cggttggcct gattctgttg accatgcagc tcaacatcag
     9721 cgaactgcta tggtcgttca gcaaaaaact ggcgattttc tggctggtgt ttggcctgtg
     9781 ctggaaggta ctggagaaga acggcgttgc cgtgcgtcac ttcggcatgc cggaacagca
     9841 gaccagccac tggcgtcggc aaattgtccg catcagtctc gcattgctgc ctatccattt
     9901 ctggtctgtg gtggcagaac tttccccgct gcatctgatg gatgatgtgc tggggcaagc
     9961 gatgattttc ttcaacctgc tgctgattgc cttcctggta tggccaatgt gccgcgaaag
    10021 ctggcgtgat aaagagtcgc acaccatgcg actggtcacc attaccgtgc tgtcgattat
    10081 cccgattgca ttgatggtgc tgactgccac gggttatttc tacaccacgc tgcgcctctc
    10141 cgggcgttgg attgaaaccg tttatctggt gatcatctgg aacttgctct accagacggt
    10201 attgcgcggc ttaagcgtag cggcgcggcg tatcgcctgg cgtcgtgcgc tggcgcgtcg
    10261 gcagaatctg gtgaaagagg gcgcagaagg tgccgaaccg ccggaagaac ccaccattgc
    10321 actggaacag gttaaccagc agacgctgcg tattaccatg ttgctgatgt ttgcgctgtt
    10381 cggtgtcatg ttctgggcaa tttggtccga tttgatcacc gtgttcagct atctcgacag
    10441 cattacgctc tggcattaca acggtactga agctggcgct gcggtggtga aaaacgtcac
    10501 catgggcagt ctgttgtttg cgattatcgc ctcaatggtg gcctgggcgt tgattcgcaa
    10561 cctgcctggt ttgctggaag tgctggtgct ctcgcgactg aatatgcgcc agggcgcgtc
    10621 gtatgccatt actaccatcc ttaactacat cattattgcc gttggtgcga tgacggtgtt
    10681 cggatcgctg ggcgtctctt gggataaact ccagtggctg gcggcagcat tatccgtagg
    10741 tcttggtttt ggtttacaag aaattttcgg taacttcgtc tccggtttga tcattctgtt
    10801 cgaacgtccg gtgcgtattg gcgatacggt aaccattggt agcttctcgg ggacggtaag
    10861 taagatccgt attcgtgcga caacgattac cgatttcgat cgcaaagaag tgatcatccc
    10921 gaacaaagcg tttgttaccg agcgtctgat caactggtcg ttgactgaca ctactacgcg
    10981 tctggtgatc cgtctcggcg tggcctatgg ctccgatctg gaaaaagtgc gtaaagtgtt
    11041 actgaaggcg gcgactgagc acccaagggt gatgcacgaa ccaatgccgg aagtcttctt
    11101 tacggcgttt ggtgccagca cgttggatca tgagctgcgt ctgtatgtgc gtgaactgcg
    11161 tgaccgtagt cgtactgtcg atgagctgaa ccgtactatc gatcagctgt gccgtgaaaa
    11221 cgacatcaac attgccttta accagcttga agtgcatctg cacaacgaga agggcgatga
    11281 ggtgacggaa gtaaaacgcg actacaaagg cgatgacccg acgccagcgg tagggtaata
    11341 accaaagggg gcgacattta gttgccccga gattactgac aaagtgcgcg ttgttcatgc
    11401 cggatgcggc gtgaccgcct tatccggcct acgaaaccgc aagaattcaa tgtattgcag
    11461 gagcggtgta ggcctgataa gcgtagcgca tcaggcagtt ttgcgtttgc ccacaatctt
    11521 aggggacatt tagcggcccc atttatttct cacttttccg cctcatcatc gcgcgttaat
    11581 ttcttttcat aatcgcgttt tacaatatcc agcgcgcgca gcacggtgcg ggctgggatc
    11641 tgattttctt ccagcagcac aatcaaatcg acagccagtt tgacatcgtc aggggcattt
    11701 tccagtgaca tactctctcc attgctagcg ggttaagcgc gctagcctgt tttcgatttt
    11761 ttccagcgca tggcggcagc gtgccaggcg cgcttcatag gcttccactt cacgatgcag
    11821 cgtttgctgt tccacgagat cggtcacccg cgccaggcgg gctctgcgtt cggcaaccat
    11881 ctcacgtagc cgccgctcaa aatcctgatg ctgaatacgt ttacgctgcc agcgggcaat
    11941 tttcggtggc gcactgtccc actcgcgcaa tgaccaggcg gaggcttcac gcgcgatggc
    12001 ttccagttgt gccgccagat gttccgccag ccaggccact tgcggcagct gttgctgctc
    12061 aactgcatga cgaagcgcag ccagattatc gcccgcctca tcgagacaag cctgcagtgt
    12121 tgtcgcacgg gtttgaaaaa ggtgtctgtc aaaacgggca cttagcgtgg caaattgcgc
    12181 taccggggca caacgctgac gcagcgtagc gagctgtcct tccagttttt ccagcagcag
    12241 ggcggttttc acgataagac ctcaatgaaa atgataattg ttatgctaaa gtagccactc
    12301 tgtaagctga caacactcaa tatgcaacga atcattttaa tcatcattgg ctggctggcg
    12361 gtagtgctgg gtacgctggg cgtggtatta ccggtattac cgacgacgcc gtttatcctg
    12421 ctggcggcct ggtgctttgc ccgttcttcc ccgcgctttc acgcctggtt gctgtaccgc
    12481 tgatggtttg gcagctatct acgtttctgg cagaaacatc atgcgatgcc gcgcggcgtc
    12541 aaaccgcggg cgattttgct tattttgctc acgtttgcca tttctctgtg gttcgtccag
    12601 atgccatggg tgcgcatcat gttgctggta attctcgcct gtttgctttt ctatatgtgg
    12661 cgaattccgg tgattgatga aaagcaagaa aagcactgaa gcacaacaat cgcagttgca
    12721 attattgcgt acagccagta cattctggcg ttttcgagca caggcgcagg cggtcaaagg
    12781 ttaaacaact gttacttttg atacgtttaa aacgcgccgt gagtaccacc gtaacaagca
    12841 ggcatacact tatgaccgcg actgcacagc agcttgagta tctcaaaaat agcatcaaaa
    12901 gcattcagga ctacccaaaa cccggcattc ttttccgcga tgtcaccagc ttactggaag
    12961 acccgaaagc ttacgctctc agcatcgact tgctggttga gcgttacaaa aatgcgggca
    13021 ttaccaaagt tgtcggcacc gaagcgcgtg gcttcttgtt tggcgctccg gtagctctgg
    13081 gtctgggcgt tggctttgta ccggtccgta aaccgggcaa actgccgcgt gaaaccatca
    13141 gtgaaactta cgacctggaa tacggcaccg atcagctgga gatccacgtt gatgccatca
    13201 aaccgggcga caaagttctg gtggtggacg atctgctggc aaccggcggc actatcgaag
    13261 cgaccgttaa actgatccgt cgtctgggtg gtgaagtggc tgacgctgcg ttcattatca
    13321 acctgttcga tctcggcggc gaacagcgtc tcgaaaaaca gggcattacc agctacagcc
    13381 ttgtcccgtt cccgggccat taattatcgc cagtcttgtg ctgcccacgc tacggacagc
    13441 acaagatgtg cattcagcct cgccgttctg acggggctgt gttagcatta ccccttcgtg
    13501 aatccacctt ccagcgtttc agagcctgcc aatgagttat caggtcttag cccgaaaatg
    13561 gcgcccacaa acctttgctg acgtcgtcgg ccaggaacat gtgctgaccg cactggcgaa
    13621 cggcttgtcg ttagggcgta ttcatcatgc ttatcttttt tccggtaccc gtggcgtcgg
    13681 aaaaacctct atcgcccgac tgctggcgaa ggggctaaac tgcgaaaccg gcattaccgc
    13741 gacgccgtgc ggcgtgtgcg ataactgtcg tgaaatcgag caggggcgct ttgtcgatct
    13801 gattgaaatc gacgccgcct cgcgcaccaa agttgaagat acccgcgacc tgctggataa
    13861 cgtccagtac gctccggcgc gtggtcgttt caaagtttat ctgatcgacg aagtgcatat
    13921 gctgtcgcgc cacagcttta acgcactgtt aaaaaccctt gaagagccgc cggagcacgt
    13981 taagtttctg ctggcgacga ccgatccaca gaaattgccg gtgacgattt tgtcgcgctg
    14041 tttgcaattt catctcaagg cgctggatgt cgagcaaatt cgccatcaac ttgagcacat
    14101 cctcaacgaa gaacatatcg ctcacgagcc gcgggcgttg caattgctgg cgcgcgccgc
    14161 tgaaggcagc ctgcgagatg ccttaagtct gaccgaccag gcgattgcca gcggtgacgg
    14221 ccaggtttca acccaggcag tcagtgcgat gctgggtacg cttgatgacg atcaggcgct
    14281 gtcgctggtt gaagcgatgg tcgaggccaa cggcgagcgc gtaatggcgc tgattaatga
    14341 agccgctgcc cgtggtatcg agtgggaagc gttgctggtg gaaatgctcg gcctgttgca
    14401 tcgtattgcg atggtacaac tttcgcctgc tgcacttggc aacgacatgg ccgccattga
    14461 gctgcggatg cgtgaactgg cgcgcaccat accgccgacg gatattcagc tttactatca
    14521 gacgctgttg attggtcgca aagaattacc gtatgcgccg gaccgccgca tgggcgttga
    14581 gatgacgctg ctgcgcgcgc tggcgttcca tccacgtatg cctctgcctg agccagaagt
    14641 gctgcgccag tcctttgcac ccgtcgcgcc aacggcagta atgacgccaa cccaggtgcc
    14701 gccgcaaccg caatcagcgc cgcagcaggc accgactgta ccgctcccgg aaaccaccag
    14761 ccaggtgctg gcggcgcgcc agcagttgca gcgcgtgcag ggagcaacca aagcaaaaaa
    14821 gagtgaaccg gcagccgcta cccgcgcacg gccggtgaat aacgctgcgc tggaaagact
    14881 ggcttcggtc accgatcgcg ttcaggcgcg tccggtgcca tcggcgctgg aaaaagcgcc
    14941 agccaaaaaa gaagcgtatc gctggaaggc gaccactccg gtgatgcagc aaaaagaagt
    15001 ggtcgccacg ccgaaggcgc tgaaaaaagc gctggaacat gaaaaaacgc cggaactggc
    15061 ggcgaagcta gcggcagaag ccattgagcg cgacccgtgg gcggcacagg tgagtcaact
    15121 ttcgctacca aaactggtcg aacaggtggc cttaaatgcc tggaaagagg agagcgacaa
    15181 cgcagtatgt ctgcatttgc gctcctctca gcggcatttg aacaaccgcg gtgcacagca
    15241 aaaactggct gaagcgttga gcacgttaaa aggttcaacg gttgaactga ctatcgttga
    15301 agatgataat cccgcggtgc gtacgccgct ggaatggcgt caggcgatat acgaagaaaa
    15361 acttgcgcag gcgcgcgagt ccattattgc ggataataat attcagaccc tgcgtcggtt
    15421 cttcgatgcg gagctggatg aagaaagtat ccgccccatt tgatcgtaag cacagcttac
    15481 gttcgtcatc cttaacgtga ttgagagaga aacctatgtt tggtaaaggc ggtctgggta
    15541 acctgatgaa gcaagcccag cagatgcaag aaaaaatgca gaaaatgcag gaagagatcg
    15601 cgcagctgga agtcaccggc gaatctggcg caggtctggt aaaagtgacc atcaacggtg
    15661 cacacaactg ccgtcgcgta gagatcgatc cgagcctgct ggaagacgac aaagagatgc
    15721 tggaagacct ggtggctgca gcattcaacg acgcagcacg tcgtattgaa gaaacgcaga
    15781 aagaaaaaat ggcctctgta tcctccggaa tgcagctgcc gcctggcttt aagatgccgt
    15841 tctgatgcaa accagcccgc tgttaacaca gcttatggaa gcactgcgct gtctgccggg
    15901 cgttggcccg aagtcggcgc agcgtatggc gttcacgctg cttcagcgcg atcgtagcgg
    15961 cgggatgcgt ctggcgcagg cgctcacccg ggcgatgtcg gaaatcggcc actgcgccga
    16021 ttgccgcact ttcaccgaac aggaagtctg taacatctgt tcgaatccgc gtcgtcagga
    16081 aaacggtcaa atctgtgtgg tggagagtcc ggcggacatc tacgccattg agcagacggg
    16141 gcagttttct ggtcgttatt ttgtgttgat ggggcatctg tcaccgctgg acggcatcgg
    16201 tccggatgat atcgggcttg accgtctgga acagcgtctg gcagaggaaa aaatcactga
    16261 agtgatcctc gccaccaatc ccacggttga aggtgaagct accgctaact acattgccga
    16321 gctttgcgcg caatatgacg tggaagccag ccgaatcgct catggcgtac cggttggcgg
    16381 cgaactggaa atggtcgatg gcaccacgct gtcacactcc cttgccgggc gtcataagat
    16441 tcgtttttaa gcaaacgaga gcaggatcac ctgctctcgc ttgaaattat tctcccttgt
    16501 ccccatctct ccctcatcct gtttttaacc ttaaaatggc attattgagg tagacctaca
    16561 tgaaaggaca agaaactcgt ggttttcagt cagaagtgaa acagcttctg cacctgatga
    16621 tccattctct ctattccaat aaagaaatct tcctgcgtga gcttatctct aacgcctccg
    16681 atgcggcgga caagctgcgt ttccgtgcgc tatctaaccc ggacctgtac gaaggtgatg
    16741 gcgaactgcg cgttcgtgtc tctttcgata aagacaagcg cacgctgacc atctccgata
    16801 acggcgtggg gatgacccgc gacgaagtga ttgaccatct ggggactatc gctaaatccg
    16861 gtaccaaatc attcctcgaa tccctgggtt ctgaccaggc gaaagacagc cagctgatcg
    16921 gtcagtttgg tgttggtttc tactctgcgt ttatcgtggc cgacaaagtg actgtgcgta
    16981 ctcgcgcggc aggcgaaaaa ccagaaaacg gcgtcttctg ggaatcggct ggcgaaggtg
    17041 aatataccgt tgccgacatc accaaagaag atcgtggtac tgaaatcacc ctgcatctgc
    17101 gtgaaggcga agacgagttc ctcgatgact ggcgcgtgcg ttccatcatc agcaaatact
    17161 ccgaccatat cgcgctgccg gtagagatcg aaaaacgcga agagaaagac ggcgaaaccg
    17221 ttatctcctg ggagaaaatc aacaaagcgc aggcgctgtg gactcgtaac aagtcggaaa
    17281 tcaccgatga agagtacaaa gagttctaca aacacatcgc ccacgacttt aatgatccgc
    17341 tgacctggag ccacaaccgc gttgaaggta agcaggagta caccagcctg ctgtacatcc
    17401 cgtcccaggc tccgtgggat atgtggaacc gtgatcataa acacggcctg aaactgtacg
    17461 tccagcgtgt gttcatcatg gacgacgcag aacagttcat gccgaactat ctgcgcttcg
    17521 tgcgtggtct gattgactcc agcgatctgc cgctgaacgt ttcccgtgaa atcctccagg
    17581 acagcacggt aacgcgtaac ctgcgcaatg cgctgaccaa gcgtgtgctg caaatgctgg
    17641 aaaaactggc gaaagacgac gcggaaaaat accagacctt ctggcaacag tttggcctgg
    17701 tactgaaaga aggtccggcg gaagatttcg ctaaccagga agcgatcgcc aaactgctgc
    17761 gttttgcttc tacccatacc gattcttctg cgcagaccgt atctctggaa gactacgttt
    17821 cccgcatgaa agaagggcag gagaaaatct actacatcac cgcagacagc tatgcggcag
    17881 cgaagagcag cccgcacctg gaactgctgc gtaagaaagg catcgaagtt ctgctgcttt
    17941 ccgaccgcat cgatgagtgg atgatgaact atctgactga gttcgacggt aaaccgttcc
    18001 agtcggtgtc taaagttgac gagtcgctgg aaaaactggc tgacgaagtt gatgagagcg
    18061 cgaaagaagc ggagaaagca ctgactccgt tcatcgaccg tgtgaaagcc ttgctcggcg
    18121 agcgcgtgaa agatgtccgt ctgactcacc gtctgaccga tacgccagcg atcgtttcga
    18181 ccgacgcgga cgaaatgagc actcagatgg cgaaactgtt cgctgcggcg ggccagaaag
    18241 tgccagaagt gaaatacatc ttcgaactga acccggatca cgtactggtg aaacgtgcgg
    18301 cagatactga agatgaagcg aagttcagcg agtgggtaga actgctgctg gatcaggcgc
    18361 tgctggcaga acgcggcacg ctggaagatc cgaacctgtt tattcgtcgt atgaaccagc
    18421 tgctggtttc ctgatgtcat gccggatgac ctttgtgtca tccggcattt ttcttttcat
    18481 catctgcact ttccgcaaat tatctcgcca ttaaccgttt cagcctcagg tgcctttctt
    18541 gaggcaatcg cctgttggtg gtatcgttta tcgctttttc aaaaaattcg acacatttta
    18601 aggggatttt cgcaatgcgt atcattctgc ttggcgctcc gggcgcgggg aaagggactc
    18661 aggctcagtt catcatggag aaatatggta ttccgcaaat ctccactggc gatatgctgc
    18721 gtgctgcggt caaatctggc tccgagctgg gtaaacaagc aaaagacatt atggatgctg
    18781 gcaaactggt caccgacgaa ctggtgatcg cgctggttaa agagcgcatt gctcaggaag
    18841 actgccgtaa tggtttcctg ttggacggct tcccgcgtac cattccgcag gcagacgcga
    18901 tgaaagaagc gggcatcaat gttgattacg ttctggaatt cgacgtaccg gacgaactga
    18961 ttgttgatcg tatcgtaggc cgccgcgttc atgcgccgtc tggtcgtgtt tatcacgtta
    19021 aattcaatcc gccgaaagta gaaggcaaag acgacgttac cggtgaagaa ctgactaccc
    19081 gtaaagacga tcaggaagaa accgtacgta aacgtctggt tgaataccat cagatgactg
    19141 caccgctgat cggctactac tccaaagaag cggaagcggg taacaccaaa tacgcgaaag
    19201 ttgacggcac caagccggtt gctgaagttc gcgctgatct ggaaaaaatc ctcggctaat
    19261 caagccgcag cagatctgct ttcgggcagg tctgctcatc cacctcaggc aatacctctc
    19321 acagcaatta gttcttcttc ctcacttttc cgctacaatt atcaacaagt tgaatcgata
    19381 agaggcggta atgcgtcaga ctaaaaccgg tatcctgctg gcaaacctgg gtacgcccga
    19441 tgcccccaca cctgaagcgg taaaacgcta tctgaaacaa tttttaagcg acagacgcgt
    19501 ggttgatacc tcacggttgt tatggtggcc attgctgcgc ggcgttattt tgccgctgcg
    19561 ctcgccgcgt gtggcgaagc tgtatgcctc tgtctggatg gaaggtggct cgccgctgat
    19621 ggtttacagc cgccagcaac agcaggcgct ggcacaacgt ttaccggaga cgcccgtagc
    19681 gctgggaatg agctacggct cgccatcact ggaaagcgcc gtcgatgaac tcctggcaga
    19741 gcatgtagat catattgtgg tgctgccgct ttatccgcaa ttctcctgtt ctacggtcgg
    19801 tgcggtatgg gatgaactgg cacgcattct ggcgcgcaaa cgtagcattc cggggatatc
    19861 gtttattcgt gattacgccg ataaccacga ttacattaat gcactggcga acagcgtacg
    19921 cgcttctttt gccaaacatg gcgaaccgga tctgctgctg ctctcttatc atggcattcc
    19981 ccagcgttat gcagatgaag gcgatgatta cccgcaacgt tgccgcacaa cgactcgcga
    20041 actggcttcc gcactgggga tggcaccgga aaaagtgatg atgacctttc agtcgcgctt
    20101 tggccgggaa ccctggctga tgccttatac cgacgaaacg ctgaaaatgc tcggagaaaa
    20161 aggcgtaggt catatacagg tgatgtgccc gggctttgct gcggattgtc tggagacgct
    20221 ggaagagatt gccgagcaaa accgtgaggt cttcctcggt gccggaggga aaaaatatga
    20281 atatattcca gcgcttaatg ccacgccaga acatatcgaa atgatggcta atcttgttgc
    20341 cgcgtatcgc taaagctgag cggtaaagaa ctgagcgccg tcgcgaagag cctcgtcggc
    20401 ggttttcatc attcgtgaat aatgcaaaaa gacatgcagc gtacctgggt agagtttgaa
    20461 ctcacagggc tgctgatgcg ccgctaacgt ctggtaaagc agacggctgt catccagcag
    20521 cggatcgaac tccgccccgg caataaaaca gggcggaact tcgcgagtga gatcattatt
    20581 aaacagacag taatacggtg actcgcggtc cgcgtcgttg cttaaatacg cctcttcata
    20641 catctgcaaa tcctgttgcg ttaagccatc ccagacaccg cccaacagac gacgagtcac
    20701 ggaatcccgt aatccgtaaa gcccatacca cagcaaaaca cccgcaattt taccgcaatc
    20761 gatctgttta tcacgcaacc acaacgcact ggcgagcgcc agcatggcac ctgcggaatc
    20821 accggcaaag ccaatgcggg acatattgat ttgataatcc tccgcctgct ggtggaaata
    20881 acaacaagca gccacaattt cctctatcgc ttgcggaaaa cgcgcttcag gtgaaagggg
    20941 gtaatcaata ccaatcaccg tacattggct gtagcttgcc agcaggcgca tgatgcgatc
    21001 gtgggtatcg agattgccga gaataaaacc gcctccatgc aaataaaata gcgtcgccgg
    21061 gctatctggc tgcggacaaa agagacgtgt ttccacctgc ccatattttg ttggaaccat
    21121 gtaagctctg gttgccattt ctggagcgcc cgcattccag aatcggcgct caagcgtgta
    21181 atactgtcgt tgctcagcaa tcgttcccgt tgcgggccag gacggtaaat ccggctgaag
    21241 agtattcaca acggtcttca tttcagcaga aataaggtcc agaacaggta gtttgttttc
    21301 cggcttcata caaaaactcc tttcaaatta cgtcattgta aggaaccact gccatgaaaa
    21361 tgcgatcccg cctgctgata ttgaaactgg ctgcgtctcg cgcgctcccg tcagattgtg
    21421 ttaacattcg ccgctcagtt aaccacccgt aaaaacaacc atgaaatttc ccggtaaacg
    21481 taaatccaaa cattacttcc ctgtaaatgc acgcgatccg ctgcttcagc aattccagcc
    21541 agaaaacgaa accagcgccg cctgggtcgt aggtattgac cagacgctgg tcgatattga
    21601 agcgaaagtg gatgatgaat tcattgagcg ttatggatta agcgccgggc attcactggt
    21661 gattgaggat gacgtagccg aagcgcttta tcaggagcta aaacagaaaa acctgattac
    21721 ccatcagttt gcgggtggca ccattggtaa caccatgcac aactactcgg tgctcgcgga
    21781 cgaccgttcg gtgctgctgg gcgtcatgtg cagcaatatt gaaattggca gttatgccta
    21841 tcgttacctg tgtaacactt ccagccgtac cgatcttaac tatctacaag gcgtggatgg
    21901 cccgattggt cgttgcttta cgctgattgg cgagtccggg gaacgtacct ttgctatcag
    21961 tccaggccac atgaaccagc tgcgggctga aagcattccg gaagatgtga ttgccggagc
    22021 ctcggcactg gttctcacct cttatctggt gcgttgcaaa ccgggtgaac ccatgccgga
    22081 agcaaccatg aaagccattg agtacgcgaa gaaatataac gtaccggtgg tgctgacgct
    22141 gggcaccaag tttgtcattg ccgagaatcc gcagtggtgg cagcaattcc tcaaagatca
    22201 cgtctctatc cttgcgatga acgaagatga agccgaagcg ttgaccggag aaagcgatcc
    22261 gttgttggca tctgacaagg cgctggactg ggtagatctg gtgctgtgca ccgccgggcc
    22321 aatcggcttg tatatggcgg gctttaccga agacgaagcg aaacgtaaaa cccagcatcc
    22381 gctgctgccg ggcgctatag cggaattcaa ccagtatgag tttagccgcg ccatgcgcca
    22441 caaggattgc cagaatccgc tgcgtgtata ttcgcacatt gcgccgtaca tgggagggcc
    22501 ggaaaaaatc atgaacacta atggagcggg ggatggcgca ttggcagcgt tgctgcatga
    22561 cattaccgcc aacagctacc atcgtagcaa cgtaccaaac tccagcaaac ataaattcac
    22621 ctggttaact tattcatcgt tagcgcaggt gtgtaaatat gctaaccgtg tgagctatca
    22681 ggtactgaac cagcattcac ctcgtttaac gcgcggcttg ccggagcgtg aagacagcct
    22741 ggaagagtct tactgggatc gttaagttat cgtcggttcg taggccagat aaggcgttca
    22801 cgccgcatct ggcatttggc tctcgatgcc tgatgcgacg ctggcgcgtc ttatcatgcc
    22861 tacatatttt tcatatttta catccggcaa ccaccgttta ccccgtcacc acctcacccg
    22921 ccggtggcgt ttccagcagt tccagcatgg tacgggcgat ttcacgctcg cccatcacta
    22981 cctgattcgc accacgttcg gtgatatacg ccacttcatc gtcataatgg gcgcgggcaa
    23041 taatctcaat atccggattt ttcgcgcggg cagatgccac aatctcaccc gcttcataac
    23101 cgttgggaat cgtcaggatc agccattttg cacattccag atgcgccagt tgcataattt
    23161 cttcgttcgc cgcattgccc aatactgcgc ggaccccgcg ctctcgcagc tcatcaacac
    23221 gggttcgtga cgtctcaatc accaccagcg gaatatcaga ggcgagcaat ttctccccca
    23281 gcaggctgcc tacacgaccg taacccacca gtagcgcatg gttgcaaata tccactggga
    23341 tctgcttctc ttcttcgatt gcctcttcca gcgtctgctc ttccagcgtt ttggtcttcg
    23401 ccagatattt ctccagtagt gcgaacagta ccgggttgag cataatcgac aggatcgccc
    23461 ctgccagtac caggttttgt ccggcctgcg gcagtaaatt caatgccatt cccagtcccg
    23521 ccaggataaa cgcgaactca ccaatctgcg ccaggctggc ggcgatggtt aatgccgtac
    23581 gttgggagtg accaaacagt cgcaccagga aaaatgcggc taacgactta ccaaacagaa
    23641 taatcgccag cgtcgccagc actgccagcg gttgctgaat cagaattaac ggatcaaaca
    23701 acatcccgac ggagacaaaa aacagcaccg caaacgcgtc gcgcaatggc agcgtatcgt
    23761 gggcggcacg gtgactcagt tcagactcgt tcagtaccat cccggcaaag aacgcaccga
    23821 gtgcaaagga gacatcaaac agctctaccg caccaaaggc aatccctaac gccagcgcca
    23881 gcaccgacag ggtaaacagc tcgcgagaac cggttgccgc gctgcgtgcc ataatccacg
    23941 gcaccagacg gcgacctacc agcatcataa tggcgataaa tgcgatcact ttgccgatgg
    24001 tgatccccat atcgactgca agagtggcaa agcccacatc gccctgttcc atcattcctg
    24061 ccactgcggg cagcaacacc agcgtcagaa ccattaccag gtcttccaca atcaaccaac
    24121 cgatggcgat ttgcccacgc tgactgtcaa ttaattgccg ttcttcaagt gcgcgcagta
    24181 acaccacggt actggcggtg gaaagacata aaccgaacac gataccgggc attaacgacc
    24241 agcccagcac ggcagagagc gccataccca gcagcgtcgc cacggctatc tgggcgatcg
    24301 caccgggaat ggcgatggcc tttaccgcca tcaaatcctt cagcgaaaag tgcaaaccga
    24361 cgccaaacat caacagaatg acgcccagtt cagccagttc cggcgcaagc ttggtatcgg
    24421 caacaaagcc cggagtgaat ggtcctgcca gcacacccgc taacagatat cccaccagag
    24481 gagaaatacg tagtttattg gccagcatgc cgaggataaa ggcgagcaca aggccgccaa
    24541 caatggtggt gataagcggg gtggcgtgat gcattccgtc tccttttcct ggtggttatt
    24601 gtccattttt ggccgggaaa accaaaatta caggtaatag tttatgacaa tttcattgat
    24661 gatgttcatg aataattatt gaattttgca gaaaaatgga attagctgca aaaaaagcac
    24721 ggttcggaaa acagaaggcg gtttaacaga ggaaaggctt atggcgactg taaaacgatg
    24781 cagccaaagt ttgcctttgg ctgcaatgaa atcagtcttt atgccggtta tcaggcagga
    24841 atatggtcaa catccccaat agtggcagga aagcacagat tttatagact aactcgatgc
    24901 tggtgtgatc ggcgataagc cccagaactg ccgctcccag acctcccatg ccaaaagcaa
    24961 aaccgaaaaa gagtccagaa accataccga tacgtcccgg aagtagctcc tgagcgtaga
    25021 ccagaatggc agataatgcc gaagcgagga taaatccaat aatcaccgtt aaaacccccg
    25081 tccagtgcag gctggcgtag ggtaaaatca gcgtaaacgg cgcaacgccg aggatagagc
    25141 cccaaatcac atatttccgt ccaattttat cccctacagg cccgccgatc actgtacctg
    25201 ccgcaacggc aaacaggaag gcaaacagat gaagctgggc attctggata gataatccga
    25261 atttttgcat cagataaaag gtgtaata
//
LOCUS       DAJVUN010000045        25247 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.045, whole genome shotgun sequence.
ACCESSION   DAJVUN010000045 DAJVUN010000000
VERSION     DAJVUN010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25247
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.045"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..402)
                     /locus_tag="OQQ76_001527"
     CDS             complement(<1..402)
                     /locus_tag="OQQ76_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS1968072.1"
                     /translation="MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFY
                     QVCHPDGLADALWGTIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFL
                     PRLVFLAASFACGAVVIGLLMRGKESLKNPLP"
     gene            781..1092
                     /gene="rpsJ"
                     /locus_tag="OQQ76_001528"
     CDS             781..1092
                     /gene="rpsJ"
                     /locus_tag="OQQ76_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HCS1968073.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            1125..1754
                     /gene="rplC"
                     /locus_tag="OQQ76_001529"
     CDS             1125..1754
                     /gene="rplC"
                     /locus_tag="OQQ76_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HCS1968074.1"
                     /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG
                     YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA
                     DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
                     MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA"
     gene            1765..2370
                     /gene="rplD"
                     /locus_tag="OQQ76_001530"
     CDS             1765..2370
                     /gene="rplD"
                     /locus_tag="OQQ76_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HCS1968075.1"
                     /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR
                     AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR
                     GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA
                     ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA"
     gene            2367..2669
                     /gene="rplW"
                     /locus_tag="OQQ76_001531"
     CDS             2367..2669
                     /gene="rplW"
                     /locus_tag="OQQ76_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007891652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HCS1968076.1"
                     /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK
                     AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE"
     gene            2687..3508
                     /gene="rplB"
                     /locus_tag="OQQ76_001532"
     CDS             2687..3508
                     /gene="rplB"
                     /locus_tag="OQQ76_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HCS1968077.1"
                     /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN
                     NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT
                     YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK"
     gene            3525..3803
                     /gene="rpsS"
                     /locus_tag="OQQ76_001533"
     CDS             3525..3803
                     /gene="rpsS"
                     /locus_tag="OQQ76_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HCS1968078.1"
                     /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM
                     IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK"
     gene            3818..4150
                     /gene="rplV"
                     /locus_tag="OQQ76_001534"
     CDS             3818..4150
                     /gene="rplV"
                     /locus_tag="OQQ76_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HCS1968079.1"
                     /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA
                     VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGSSMKRIMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            4168..4869
                     /gene="rpsC"
                     /locus_tag="OQQ76_001535"
     CDS             4168..4869
                     /gene="rpsC"
                     /locus_tag="OQQ76_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HCS1968080.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT
                     KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN
                     IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE
                     KPAAQPKKQQRKGRK"
     gene            4882..5292
                     /gene="rplP"
                     /locus_tag="OQQ76_001536"
     CDS             4882..5292
                     /gene="rplP"
                     /locus_tag="OQQ76_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HCS1968081.1"
                     /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR
                     QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM"
     gene            5292..5483
                     /gene="rpmC"
                     /locus_tag="OQQ76_001537"
     CDS             5292..5483
                     /gene="rpmC"
                     /locus_tag="OQQ76_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000644743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HCS1968082.1"
                     /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK
                     QVRRDVARVKTLLNEKAGA"
     gene            5483..5737
                     /gene="rpsQ"
                     /locus_tag="OQQ76_001538"
     CDS             5483..5737
                     /gene="rpsQ"
                     /locus_tag="OQQ76_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HCS1968083.1"
                     /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL
                     HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL"
     gene            5902..6273
                     /gene="rplN"
                     /locus_tag="OQQ76_001539"
     CDS             5902..6273
                     /gene="rplN"
                     /locus_tag="OQQ76_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015817037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HCS1968084.1"
                     /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            6284..6598
                     /gene="rplX"
                     /locus_tag="OQQ76_001540"
     CDS             6284..6598
                     /gene="rplX"
                     /locus_tag="OQQ76_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HCS1968085.1"
                     /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK
                     HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET
                     IK"
     gene            6613..7152
                     /gene="rplE"
                     /locus_tag="OQQ76_001541"
     CDS             6613..7152
                     /gene="rplE"
                     /locus_tag="OQQ76_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HCS1968086.1"
                     /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI
                     ADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA
                     KSDEEGRALLAAFDFPFRK"
     gene            7167..7472
                     /gene="rpsN"
                     /locus_tag="OQQ76_001542"
     CDS             7167..7472
                     /gene="rpsN"
                     /locus_tag="OQQ76_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HCS1968087.1"
                     /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA
                     VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            7506..7898
                     /gene="rpsH"
                     /locus_tag="OQQ76_001543"
     CDS             7506..7898
                     /gene="rpsH"
                     /locus_tag="OQQ76_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HCS1968088.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG
                     FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            7911..8444
                     /gene="rplF"
                     /locus_tag="OQQ76_001544"
     CDS             7911..8444
                     /gene="rplF"
                     /locus_tag="OQQ76_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HCS1968089.1"
                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK
                     HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
                     INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK
                     GVRYADEVVRTKEAKKK"
     gene            8454..8807
                     /gene="rplR"
                     /locus_tag="OQQ76_001545"
     CDS             8454..8807
                     /gene="rplR"
                     /locus_tag="OQQ76_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HCS1968090.1"
                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG
                     SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
                     VQALADAAREAGLQF"
     gene            8822..9325
                     /gene="rpsE"
                     /locus_tag="OQQ76_001546"
     CDS             8822..9325
                     /gene="rpsE"
                     /locus_tag="OQQ76_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HCS1968091.1"
                     /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
                     VEEILGK"
     gene            9329..9508
                     /gene="rpmD"
                     /locus_tag="OQQ76_001547"
     CDS             9329..9508
                     /gene="rpmD"
                     /locus_tag="OQQ76_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HCS1968092.1"
                     /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI
                     RGMINAVSFMVKVEE"
     gene            9512..9946
                     /gene="rplO"
                     /locus_tag="OQQ76_001548"
     CDS             9512..9946
                     /gene="rplO"
                     /locus_tag="OQQ76_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HCS1968093.1"
                     /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG
                     GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG
                     IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE"
     gene            9954..11285
                     /gene="secY"
                     /locus_tag="OQQ76_001549"
     CDS             9954..11285
                     /gene="secY"
                     /locus_tag="OQQ76_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004868351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HCS1968094.1"
                     /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI
                     DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL
                     AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA
                     VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL
                     VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP
                     AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA
                     LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR
                     DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR"
     gene            11317..11433
                     /gene="rpmJ"
                     /locus_tag="OQQ76_001550"
     CDS             11317..11433
                     /gene="rpmJ"
                     /locus_tag="OQQ76_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HCS1968095.1"
                     /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG"
     gene            11580..11936
                     /gene="rpsM"
                     /locus_tag="OQQ76_001551"
     CDS             11580..11936
                     /gene="rpsM"
                     /locus_tag="OQQ76_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HCS1968096.1"
                     /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK
                     ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            11953..12342
                     /gene="rpsK"
                     /locus_tag="OQQ76_001552"
     CDS             11953..12342
                     /gene="rpsK"
                     /locus_tag="OQQ76_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HCS1968097.1"
                     /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW
                     ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            12376..12996
                     /gene="rpsD"
                     /locus_tag="OQQ76_001553"
     CDS             12376..12996
                     /gene="rpsD"
                     /locus_tag="OQQ76_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HCS1968098.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR
                     KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV
                     YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
                     LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK"
     gene            13022..14011
                     /gene="rpoA"
                     /locus_tag="OQQ76_001554"
     CDS             13022..14011
                     /gene="rpoA"
                     /locus_tag="OQQ76_001554"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HCS1968099.1"
                     /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL
                     NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH
                     SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR
                     RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE"
     gene            14052..14435
                     /gene="rplQ"
                     /locus_tag="OQQ76_001555"
     CDS             14052..14435
                     /gene="rplQ"
                     /locus_tag="OQQ76_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HCS1968100.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL
                     RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRSEKAEAAAE"
     gene            14542..14910
                     /locus_tag="OQQ76_001556"
     CDS             14542..14910
                     /locus_tag="OQQ76_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HCS1968101.1"
                     /translation="MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELR
                     AGYRLLKNAGCLPPELEQRREAIQLLDILRGIRHDDPQYQEVSRRLSLLELKLRQAGL
                     STDFLRGDYADKLLDKINDN"
     gene            14921..15346
                     /gene="zntR"
                     /locus_tag="OQQ76_001557"
     CDS             14921..15346
                     /gene="zntR"
                     /locus_tag="OQQ76_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(2+)-responsive transcriptional regulator"
                     /protein_id="HCS1968102.1"
                     /translation="MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESD
                     LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS
                     MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC"
     gene            15402..15620
                     /gene="arfA"
                     /locus_tag="OQQ76_001558"
     CDS             15402..15620
                     /gene="arfA"
                     /locus_tag="OQQ76_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome-rescue factor ArfA"
                     /protein_id="HCS1968103.1"
                     /translation="MSRYQHTKGQIRDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGK
                     HGNRGNWEASGKKVNHFFTTGLLLSGAC"
     gene            complement(15617..16027)
                     /gene="mscL"
                     /locus_tag="OQQ76_001559"
     CDS             complement(15617..16027)
                     /gene="mscL"
                     /locus_tag="OQQ76_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HCS1968104.1"
                     /translation="MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP
                     LGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL
                     NRKKEEPAAAPAPTKEEVLLAEIRDLLKEQNNRS"
     gene            complement(16157..17533)
                     /gene="trkA"
                     /locus_tag="OQQ76_001560"
     CDS             complement(16157..17533)
                     /gene="trkA"
                     /locus_tag="OQQ76_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HCS1968105.1"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD
                     LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP
                     DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA
                     YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI
                     RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN
                     TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA
                     YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS
                     RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL
                     FQPSPFFL"
     gene            complement(17555..18844)
                     /gene="rsmB"
                     /locus_tag="OQQ76_001561"
     CDS             complement(17555..18844)
                     /gene="rsmB"
                     /locus_tag="OQQ76_001561"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HCS1968106.1"
                     /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL
                     QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET
                     VEGAIAIKRPQLKGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYPEQ
                     WQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH
                     ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAV
                     DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHH
                     PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQR
                     TADAELCETGAPEQPGKQNLPGAEEGDGFFYAKLIKK"
     gene            complement(18890..19837)
                     /gene="fmt"
                     /locus_tag="OQQ76_001562"
     CDS             complement(18890..19837)
                     /gene="fmt"
                     /locus_tag="OQQ76_001562"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HCS1968107.1"
                     /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG
                     KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVADLQADVMVVVAYGLILPKAVLEM
                     PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT
                     AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWS
                     LSAAQLERCIRAFNPWPMSWLEIERQPVKVWKASVIDTATNAAPGTILEANKQGIQVA
                     TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLA"
     gene            complement(19852..20361)
                     /gene="def"
                     /locus_tag="OQQ76_001563"
     CDS             complement(19852..20361)
                     /gene="def"
                     /locus_tag="OQQ76_001563"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HCS1968108.1"
                     /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG
                     IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPKQRALVP
                     RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE
                     KLDRLKARA"
     gene            20491..21615
                     /gene="dprA"
                     /locus_tag="OQQ76_001564"
     CDS             20491..21615
                     /gene="dprA"
                     /locus_tag="OQQ76_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HCS1968109.1"
                     /translation="MVDTDIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGL
                     TLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGEL
                     HALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
                     GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGL
                     SKGVLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEP
                     EEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQP
                     VPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV"
     gene            21587..22060
                     /locus_tag="OQQ76_001565"
     CDS             21587..22060
                     /locus_tag="OQQ76_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 domain-containing protein"
                     /protein_id="HCS1968110.1"
                     /translation="MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFDREDIYNAL
                     LWLEKLADYQEGLTEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLEI
                     REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH"
     gene            22089..22631
                     /locus_tag="OQQ76_001566"
     CDS             22089..22631
                     /locus_tag="OQQ76_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HCS1968111.1"
                     /translation="MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV
                     RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDET
                     AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
                     AQGVKHFCASKQCGKPVSAE"
     gene            22636..23208
                     /gene="tsaC"
                     /locus_tag="OQQ76_001567"
     CDS             22636..23208
                     /gene="tsaC"
                     /locus_tag="OQQ76_001567"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase type 1
                     TsaC"
                     /protein_id="HCS1968112.1"
                     /translation="MNNNLQGDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVM
                     RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPAT
                     TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA
                     AFPVVPGETGGRLNPSEIRDALTGELFRQG"
     gene            23213..24031
                     /gene="aroE"
                     /locus_tag="OQQ76_001568"
     CDS             23213..24031
                     /gene="aroE"
                     /locus_tag="OQQ76_001568"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HCS1968113.1"
                     /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI
                     NTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLKRLEDGRLQGDNTD
                     GIGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK
                     LFAHTGSIQALGMDELEGHEFDLIINATSSGISGDIPAIPSSLIHLGIYCYDMFYQKG
                     KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA"
     gene            24028..24285
                     /locus_tag="OQQ76_001569"
     CDS             24028..24285
                     /locus_tag="OQQ76_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1488 domain-containing protein"
                     /protein_id="HCS1968114.1"
                     /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF
                     TGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP"
     gene            complement(24261..24815)
                     /locus_tag="OQQ76_001570"
     CDS             complement(24261..24815)
                     /locus_tag="OQQ76_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HCS1968115.1"
                     /translation="MSDVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVV
                     IRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGN
                     RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAG
                     LLYSANNYVKWKDEYLDQGNQTQP"
BASE COUNT         6459 a         5998 c         6574 g         6216 t
ORIGIN      
        1 aggcagcggg ttttttaatg attcttttcc tctcatgagc agaccaataa ctacggctcc
       61 gcaagcgaat gaggcagcaa ggaaaaccag tcgtggtaag aaggcccatg aatgccaggc
      121 gccaagggcg gcgagaaact tcacatcacc atagcctaat ccttctttat gtcgcagtat
      181 gcgatacccc cagtaaatga cagcgaatgt gccgtaacca acaattgtcc cccataacgc
      241 atcggctaaa ccatcaggat gacaaacttg atagaacaaa agacctgacc agagtaacgg
      301 gcacgtaaat ctgtcaggta acaagccatg ctttgcatcc cagaaaaaaa gtagggctga
      361 taaacaagcg tacaaaatca gaaagggaag ggtagtgtcc ataaaacatc ctctgtaatt
      421 ggagtatcac catcgaataa ctccggatgc tcagcaacag agagagcgct gatttgttaa
      481 cctgattccg gtgaaaaacg ctatcttcac aaccttacaa atttcgtgga atgcagctcg
      541 caatctgcgc gttgcgatta atttctaccc gatgcttgcg tcaggctcag atttgcgtat
      601 aatgcgcggg cttgtcgtag ttgacagcag gttcaatctg aacctcagtt agccgaattt
      661 ggctacctaa caatgctccc aatcggggag ctacgtaaga acggttacac tctcccatca
      721 atcgtaatgg gtctgaggag taatcatttt cgtttataaa ataattggag ctctggtctc
      781 atgcagaacc aaagaatccg tatccgcctg aaagcgtttg atcatcgtct gatcgatcaa
      841 gcaaccgcgg aaatcgtcga gactgccaag cgcactggtg cgcaggtccg tggtccgatc
      901 ccgctgccga cacgcaaaga gcgcttcact gttctgatct ccccgcacgt caacaaagac
      961 gcgcgcgatc agtacgaaat ccgtactcac ttgcgtctgg ttgacatcgt tgagccaacc
     1021 gagaaaaccg ttgatgctct gatgcgtctg gatctggctg ccggtgtaga cgtgcagatc
     1081 agcctgggtt aatcaggtca ttgagcgatt gagaggttga aacaatgatt ggtttagtcg
     1141 gtaaaaaagt gggtatgacc cgtatcttca cagaagacgg cgtttctatc ccagtaaccg
     1201 taatcgaagt tgaagcaaac cgcgttactc aggttaaaga cctggctaac gatggctacc
     1261 gtgctattca ggtgaccacc ggtgctaaaa aagctaaccg tgtgaccaag cctgaagctg
     1321 gccacttcgc taaagctggc gtagaagctg gccgtggtct gtgggaattc cgcctggctg
     1381 aaggcgaaga gttcactgta ggtcagagca ttagcgttga actgtttgct gacgttaaaa
     1441 aagttgacgt aactggcacc tctaaaggta aaggtttcgc aggtaccgtt aagcgctgga
     1501 acttccgtac ccaggacgct actcacggta actccttgtc tcaccgcgtt ccgggttcta
     1561 tcggtcagaa ccagactccg ggcaaagtgt tcaaaggcaa gaaaatggca ggtcagatgg
     1621 gtaacgaacg tgtaaccgtt cagagccttg acgtagtacg cgttgacgct gagcgcaacc
     1681 tgctgctggt taaaggtgct gtcccgggtg caaccggtag cgacctgatc gttaaaccag
     1741 ctgtgaaggc gtaaggagat agcaatggaa ttagtattga aagacgcgca gagcgcgctg
     1801 actgtttccg aaactacctt cggtcgtgat ttcaacgaag cgctggttca ccaggttgtt
     1861 gttgcttatg cagctggtgc tcgtcagggt actcgtgctc agaagactcg tgctgaagta
     1921 actggttccg gtaaaaaacc gtggcgccag aaaggcaccg gccgtgcgcg ttctggttct
     1981 atcaagagcc cgatctggcg ttctggtggc gtgacctttg ctgctcgtcc gcaggaccac
     2041 agtcaaaaag ttaacaagaa gatgtaccgc ggcgcgctga aaagcatcct gtccgaactg
     2101 gtacgtcagg atcgtctgat cgttgtcgag aagttctctg tagaagcgcc gaaaactaag
     2161 ctgctggcac agaaactgaa agacatggct ctggaagatg tgctgatcat caccggtgag
     2221 ctggacgaaa acctgttcct ggctgcgcgc aacctgcaca aggttgacgt acgcgatgca
     2281 actggtatcg acccggttag cctgatcgcc ttcgacaaag tcgtaatgac tgctgatgct
     2341 gttaagcaag ttgaggagat gctggcatga ttcgtgaaga acgtctgctg aaggtgctgc
     2401 gtgcaccgca cgtttctgaa aaagcgtcta ctgcgatgga aaaatccaac accatcgtac
     2461 tcaaagttgc taaagacgcg accaaagcag aaatcaaagc tgctgtgcag aaactgtttg
     2521 aagtcgaagt cgaagtcgtt aacaccctgg tagttaaagg gaaagttaaa cgtcacggac
     2581 agcgtatcgg tcgtcgtagc gactggaaaa aagcttacgt caccctgaaa gaaggccaga
     2641 atctggactt cgttggcggc gctgagtaag tcggaggagt aatacaatgg cagttgttaa
     2701 atgtaaaccg acatctccgg gtcgtcgcca cgtagttaaa gtggttaacc ctgagctgca
     2761 caagggcaaa ccttttgctc cgttgctgga aaaaaacagc aaatccggtg gtcgtaacaa
     2821 caatggccgt atcaccactc gtcatatcgg tggtggccac aagcaggctt accgtattgt
     2881 tgacttcaaa cgcaacaaag acggtatccc ggcagttgtt gaacgtcttg agtacgatcc
     2941 gaaccgttcc gcgaacatcg cgctggttct gtacaaagac ggtgaacgcc gttacatcct
     3001 ggcccctaaa ggcctgaaag ctggcgacca gattcagtct ggcgttgatg ctgcaatcaa
     3061 accaggtaac accctgccga tgcgcaacat cccggttggt tctactgttc ataacgtaga
     3121 aatgaaacca ggtaaaggcg gtcagctggc acgttccgct ggtacttacg ttcagatcgt
     3181 tgctcgtgat ggtgcttatg tcaccctgcg tctgcgttct ggtgaaatgc gtaaagtaga
     3241 agcagactgc cgtgcaactc tgggcgaagt tggcaatgct gagcatatgc tgcgcgttct
     3301 gggtaaagca ggtgctgcac gctggcgtgg tgttcgtccg accgttcgcg gtaccgcgat
     3361 gaacccggta gaccacccac atggtggtgg tgaaggtcgt aactttggta agcacccggt
     3421 aactccgtgg ggcgttcaga ccaaaggtaa gaagacccgc agcaacaagc gtactgataa
     3481 attcatcgta cgtcgccgta gcaaataatt ttagaggata agccatgcca cgttctctca
     3541 agaaaggtcc ttttattgac ctgcacttgc tgaagaaggt agagaaagcg gtggaaagcg
     3601 gagacaagaa gcccctgcgc acttggtccc gtcgttcaac gatctttcct aacatgatcg
     3661 gtttgaccat cgctgtccat aatggtcgtc agcacgttcc ggtatttgta accgacgaaa
     3721 tggtcggtca caaactgggt gaattcgcac cgactcgtac ttatcgcggc cacgctgctg
     3781 ataaaaaagc gaagaagaaa taaggtagga ggaagagatg gaaactatcg ctaaacatcg
     3841 ccatgctcgt tcttctgctc agaaggttcg ccttgttgct gacctgattc gcggtaagaa
     3901 agtgtcgcag gctctggata ttttgaccta caccaacaag aaagcggctg tactggtcaa
     3961 gaaagttctg gaatctgcca ttgctaacgc tgaacacaac gatggcgctg acattgacga
     4021 tctgaaagtt acgaaaattt tcgtagacga aggctcgagc atgaagcgca ttatgccgcg
     4081 tgcaaaaggt cgtgcagatc gcatcctgaa gcgcaccagc cacatcactg tggttgtgtc
     4141 cgatcgctga gactctggag actagcaatg ggtcagaaag tacatcctaa tggtattcgc
     4201 ctgggtattg taaaaccatg gaactctacc tggtttgcga acaccaaaga attcgctgac
     4261 aacctggaca gcgattttaa agtacgtcag tacctgacta aggaactggc taaagcgtcc
     4321 gtatctcgta tcgttatcga gcgtccggct aagagcatcc gtgtaaccat tcacactgct
     4381 cgcccgggta tcgttatcgg taaaaaaggt gaagacgtag aaaaactgcg taaggtcgta
     4441 gcggacatcg ctggcgttcc tgcacagatc aacatcgccg aagttcgtaa gcctgaactg
     4501 gacgcaaaac tggttgctga cagcatcact tctcagctgg aacgtcgcgt tatgttccgt
     4561 cgtgctatga agcgtgctgt acagaacgca atgcgtctgg gcgctaaagg tattaaagtt
     4621 gaagttagcg gccgtctggg cggcgcggaa atcgcacgta ccgaatggta ccgcgaaggt
     4681 cgcgtaccgc tgcacactct gcgtgctgac atcgactaca acacctctga agcgcacacc
     4741 acttacggtg taatcggcgt taaagtgtgg atcttcaaag gcgagatcct gggtggtatg
     4801 gctgctgttg aacaaccgga aaaaccggct gctcagccta aaaagcagca gcgtaaaggc
     4861 cgtaaataag gagcgtcgct gatgttacaa ccaaagcgta caaaattccg taaaatgcac
     4921 aaaggccgta accgcggtct ggcgcagggt acggatgtta gcttcggcag cttcggtctg
     4981 aaagctgttg gccgtggtcg tctgactgcc cgtcagatcg aagcagcacg tcgtgctatg
     5041 acccgtgcag ttaagcgtca aggtaagatc tggatccgtg tgttcccgga caaaccgatc
     5101 actgaaaagc cgctggcagt gcgtatgggt aaaggtaaag gtaacgtgga gtattgggtt
     5161 gccttgattc agccgggtaa agtcctgtat gaaatggacg gtgttccgga agagctggcc
     5221 cgtgaagcat tcaagctggc agcagcgaaa ctgccgatta aaaccacctt tgtaactaag
     5281 acggtgatgt aatgaaagca aaagagctgc gtgagaagag cgttgaagag ctgaacaccg
     5341 agctgctgaa cctgctgcgt gagcagttca acctgcgtat gcaggctgca agtggccagc
     5401 tgcaacagtc tcacctgttg aagcaagtgc gtcgcgatgt cgcacgcgtt aagactttac
     5461 tgaacgagaa ggcgggtgcg taatgaccga taaaatccgt actctgcaag gtcgcgttgt
     5521 tagcgacaaa atggagaaat ccattgttgt tgctatcgaa cgttttgtga aacacccgat
     5581 ctacggtaaa ttcatcaagc gtacgaccaa actgcacgta catgacgaga acaacgaatg
     5641 cggtatcggt gacgtggttg aaatccgcga atgccgtccg ctgtccaaga ctaaatcctg
     5701 gacgctggtt cgcgttgtag agaaagcggt tctgtaatac agtacactct ctcgatacga
     5761 ataaacggct cagaaatgag ccgtttattt tttctatcca tatccttgaa gcggtgttat
     5821 aatgccgcgc cctcgatatg gggattttta acgacctgat tttcgggtct cagtagtagt
     5881 tgacattagc ggagcactaa aatgatccaa gaacagacta tgctgaacgt cgccgacaac
     5941 tccggtgcac gtcgcgtaat gtgtatcaag gttctgggtg gctcgcaccg tcgctacgca
     6001 ggcgtaggcg acatcatcaa gatcaccatc aaagaagcaa ttccgcgtgg taaggtcaaa
     6061 aaaggtgatg tgctgaaggc ggtagtggtg cgcaccaaga agggtgttcg tcgcccggac
     6121 ggttctgtca ttcgcttcga tggtaatgct tgtgttcttc tgaacaacaa cagcgagcag
     6181 cctatcggta cgcgtatttt tgggccggta actcgtgagc ttcgtagtga gaagttcatg
     6241 aaaattatct ctctggcacc agaagtactc taaggagcga atcatggcag cgaaaatccg
     6301 tcgtgatgac gaagttatcg tgttaaccgg taaagataaa ggtaaacgcg gtaaagttaa
     6361 gaatgtcctg tcttccggca aggtcattgt tgaaggtatc aacctggtta agaaacatca
     6421 gaagccggtt ccggccctga accaaccggg tggcatcgtt gaaaaagaag ccgctattca
     6481 ggtttccaac gtagcaatct tcaatgcggc aaccggcaag gctgaccgtg taggctttag
     6541 attcgaagac ggcaaaaaag tccgtttctt caagtctaac agcgaaacta tcaagtaatt
     6601 tggagtagta cgatggcgaa actgcatgat tactacaaag acgaagtagt taaaaaactc
     6661 atgactgagt ttaactacaa ttctgtcatg caagtccctc gggtcgagaa gatcaccctg
     6721 aacatgggtg ttggtgaagc gatcgctgac aaaaaactgc tggataacgc agcagcagac
     6781 ctggcagcaa tctccggtca aaaaccgctg atcaccaaag cacgcaaatc tgttgcaggc
     6841 ttcaaaatcc gtcagggcta tccgatcggc tgtaaagtaa ctctgcgtgg cgaacgcatg
     6901 tgggagttct ttgagcgcct gatcactatt gctgtacctc gtatccgtga cttccgtggc
     6961 ctgtccgcta agtctttcga cggtcgtggt aactacagca tgggtgtccg tgagcagatc
     7021 atcttcccag aaatcgacta cgataaagtc gaccgcgttc gtggtttgga tattaccatt
     7081 accactactg cgaaatctga cgaagaaggc cgcgctctgc tggctgcctt tgacttcccg
     7141 ttccgcaagt aaggtagggt tactaaatgg ctaagcaatc aatgaaagca cgcgaagtaa
     7201 aacgcgtagc tttagctgat aaatacttcg cgaaacgcgc tgaactgaaa gcgatcatct
     7261 ctgatgtgaa cgcttccgac gaagatcgtt ggaacgctgt tctcaagctg cagactctgc
     7321 cgcgtgattc cagcccgtct cgtcagcgta accgctgccg tcaaacaggt cgtccgcatg
     7381 gtttcctgcg gaagttcggg ttgagccgta ttaaggtccg tgaagccgct atgcgcggtg
     7441 aaatcccggg tctgaaaaag gctagctggt aattgtcacc aattgaatca cgggagtaaa
     7501 gacagatgag catgcaagat ccgatcgcgg atatgctgac ccgtatccgt aacggtcagg
     7561 ccgcgaacaa agctgcggtc accatgcctt cctccaagct gaaagtggca atcgccaacg
     7621 tgctgaagga agaaggtttt attgaagatt ttaaagttga aggcgacacc aagcctgaac
     7681 tggaacttac tctgaagtat ttccagggca aagctgttgt agaaagcatt cagcgtgtca
     7741 gccgcccagg tctgcgcatc tataaacgta aagatgagct gccgaaagtt atggcgggtc
     7801 tgggtatcgc agttgtttct acctctaaag gtgttatgac tgatcgtgca gcgcgccagg
     7861 ctggtcttgg tggcgaaatt atctgctacg tagcctaatc ggaggaaaaa atgtctcgtg
     7921 ttgctaaagc accggtcgtt gttcctgccg gcgttgacgt aaaaatcaac ggtcaggtta
     7981 ttacgatcaa aggtaaaaac ggcgagctga ctcgtactct caacgatgct gttgaagtta
     8041 aacatgcaga taataccctg accttcggtc cgcgtgatgg ttacgcagac ggttgggcac
     8101 aggctggtac cgcgcgtgcc ctgctgaact caatggttat cggtgttacc gaaggcttca
     8161 ctaagaagct gcagctggtt ggtgtaggtt accgtgcagc ggttaaaggt aatgtgatta
     8221 acctgtctct gggtttctct catcctgttg accatcagct gcctgcgggt atcactgctg
     8281 aatgtccgac tcagactgaa atcgtgctga aaggcgctga taagcaggtg atcggccagg
     8341 ttgcagcgga tctgcgcgcc taccgtcgtc ctgagcctta taaaggcaag ggtgttcgtt
     8401 acgccgacga agtcgtgcgt accaaagagg ctaagaagaa gtaaggtaac actatggata
     8461 agaaatctgc tcgtatccgt cgtgcgaccc gcgcacgccg caagctccag gagctgggcg
     8521 caactcgcct ggtggtacat cgtaccccgc gtcacattta cgcacaggta attgcaccga
     8581 acggttctga agttctggta gctgcttcta ctgtagaaaa agctatcgct gaacaactga
     8641 agtacaccgg taacaaagac gcggctgcag ctgtgggtaa agctgtcgct gaacgcgctc
     8701 tggaaaaagg catcaaagat gtatcctttg accgttccgg gttccaatat catggtcgtg
     8761 tccaggcact ggcagatgct gcccgtgaag ctggccttca gttctaaggt agaggtgtaa
     8821 gatggctcac atcgaaaaac aagctggcga actgcaggaa aagctgatcg cggtaaaccg
     8881 cgtatctaaa accgttaaag gtggtcgtat tttctccttc acagctctga ctgtagttgg
     8941 cgatggtaac ggtcgcgttg gttttggtta cggtaaagcg cgtgaagttc cagcagcgat
     9001 ccagaaagcg atggaaaaag cccgtcgcaa tatgattaac gtcgcgctga ataacggcac
     9061 tctgcaacac cctgttaaag gtgttcacac gggttctcgc gtattcatgc agccggcttc
     9121 cgaaggtacc ggtatcatcg ccggtggtgc aatgcgcgcc gttctggaag tcgctggggt
     9181 tcataacgtt ctggctaaag catatggttc caccaacccg atcaacgtgg ttcgtgcaac
     9241 tattgatggc ctggaaaata tgaattctcc agaaatggtc gctgccaagc gtggtaaatc
     9301 cgttgaagaa attctgggga aataaaccat ggcaaagact attaaaatta ctcaaacccg
     9361 cagtgcaatc ggtcgtctgc cgaaacacaa ggcaacgctg cttggcctgg gtctgcgtcg
     9421 tattggtcac accgtagagc gcgaggatac tcctgctatt cgcggtatga tcaacgcggt
     9481 ttccttcatg gttaaagttg aggagtaaga gatgcgttta aatactctgt ctccggccga
     9541 aggctccaaa aaggcgggta aacgcttggg tcgtggtatc ggttctggcc tcggtaaaac
     9601 cggtggtcgt ggtcacaaag gtcagaagtc tcgttctggc ggtggcgtac gtcgcggttt
     9661 cgagggtggt cagatgcctc tgtaccgtcg tctgccgaaa ttcggcttca cttctcgtaa
     9721 agcagcgatt acagccgaag ttcgtctgtc tgacctggct aaagtagaag gcggtgttgt
     9781 agacctgaac acgctgaaag cggctaacat tatcggtatc cagatcgagt tcgcgaaagt
     9841 gatcctggct ggcgaagtaa cgactccggt aactgttcgt ggcctgcgtg ttactaaagg
     9901 cgctcgtgct gctatcgaag ctgctggcgg taaaatcgag gaataagtag cagatggcta
     9961 aacaaccggg attagatttt caaagtgcca aaggtggctt aggcgagctg aaacgcagac
    10021 tgctgtttgt tatcggtgcg ctgattgtgt tccgtattgg ctcttttatt ccgatccctg
    10081 gtattgatgc cgctgtactt gccaaactgc ttgagcaaca gcgaggcacc atcattgaga
    10141 tgtttaacat gttctctggt ggtgctctca gccgtgcttc tatctttgct ctggggatca
    10201 tgccgtatat ttcggcgtcg atcattatcc agctgctgac ggtggttcac ccaacgttgg
    10261 cggaaattaa gaaagaaggg gagtctggtc gtcgtaagat cagccagtac acccgctacg
    10321 gtactctggt gctggcaata ttccagtcga tcggtattgc taccggtctg ccgaatatgc
    10381 ctggtatgca aggcctggtg attaacccgg gctttgcatt ctacttcacc gctgttgtaa
    10441 gtctggtcac aggaacgatg ttcctgatgt ggttgggcga acagatcact gaacgaggta
    10501 tcggcaacgg tatttcaatc attatcttcg ccggtattgt cgcgggactc ccgccagcca
    10561 ttgcccatac tatcgagcaa gcgcgtcaag gcgacctgca cttcctcgtg ttgctgttgg
    10621 ttgcagtatt agtatttgca gtgacgttct ttgtcgtatt tgttgagcgt ggtcaacgcc
    10681 gcattgtggt aaactacgcg aaacgtcagc aaggtcgtcg tgtctatgct gcacagagca
    10741 cacatttacc gctgaaagtg aatatggcgg gggtaatccc ggcaatcttc gcttccagta
    10801 ttattctgtt cccggcgacc atcgcgtcat ggttcggggg cggtactggt tggaactggc
    10861 tgacaacaat ttcgctgtat ttgcagcctg ggcaaccgct ttatgtgtta ctctatgcgt
    10921 ctgcaatcat cttcttctgt ttcttctaca cggcgttggt tttcaacccg cgtgaaacag
    10981 cagataacct gaagaagtcc ggtgcatttg taccaggaat tcgtccggga gagcaaacgg
    11041 cgaagtatat cgataaagta atgacccgcc tgaccctggt tggtgcgctg tatattacct
    11101 ttatctgcct gatcccggag ttcatgcgtg atgcaatgaa agtaccgttc tacttcggtg
    11161 ggacctcact gcttatcgtt gttgtcgtga ttatggactt tatggctcaa gtgcaaactc
    11221 tgatgatgtc cagtcagtat gagtctgcat tgaagaaggc gaacctgaaa ggctacggcc
    11281 gataattggt cgcccgagaa gttacggaga gtaaaaatga aagttcgtgc ttccgtcaag
    11341 aaattatgcc gtaactgcaa aatcgttaag cgtgatggtg tcatccgtgt gatttgcagt
    11401 gccgagccga agcataaaca gcgccaaggc tgattttttc gcatattttt cttgcaaagt
    11461 tgggttgagc tggctagatt agccagccaa tcttttgtat gtctgtgcgt ttccatttga
    11521 gtatcctgaa aacgggcttt tcagcatgga acgtacatat taaatagtag gagtgcatag
    11581 tggcccgtat agcaggcatt aacattcctg atcataagca tgccgtaatc gcattaactt
    11641 cgatttatgg cgtcggcaag acccgttcta aagccatctt ggctgcagcg ggtatcgctg
    11701 aagatgttaa gatcagtgag ctgtctgaag gacaaatcga cacgctgcgt gacgaagttg
    11761 ccaaatttgt cgttgaaggt gatctgcgcc gtgaaatcag catgagcatc aagcgcctga
    11821 tggatcttgg ttgctatcgc ggtttgcgtc atcgtcgtgg tctcccggtt cgcggtcagc
    11881 gtaccaagac caacgcacgt acccgtaagg gtccgcgcaa accgatcaag aaataatcgg
    11941 ggtgattgaa taatggcaaa ggcaccaatt cgtgcacgta aacgtgtaag aaaacaagtc
    12001 tctgacggcg tggctcatat ccatgcttct ttcaacaaca ccatcgtgac tatcactgat
    12061 cgtcagggta acgcgttggg ttgggcaaca gccggtggtt ccggtttccg tggttctcgc
    12121 aaatccactc cgtttgcagc tcaggttgca gcagagcgtt gcgctgacgc cgtgaaagaa
    12181 tacggcatca agaatctgga agttatggtt aaaggtccgg gtccaggccg cgaatctact
    12241 attcgtgctc tgaacgccgc aggtttccgc atcactaaca ttactgatgt gactccgatc
    12301 cctcataacg gttgtcgtcc gccgaaaaaa cgtcgcgtat aacgcctcgt tttccaggtt
    12361 tgttggagaa agaaaatggc aagatatttg ggtcctaagc tcaagctgag ccgtcgtgag
    12421 ggcaccgact tattccttaa gtctggcgtt cgcgcgatcg ataccaagtg taaaattgaa
    12481 caagctcctg gccagcacgg tgcgcgtaaa ccgcgtctgt ctgactatgg tgtgcagttg
    12541 cgtgaaaagc aaaaagttcg ccgtatctat ggtgtgctgg agcgtcagtt ccgtaactac
    12601 tacaaagaag cagcacgtct gaaaggcaac accggtgaaa acctgttggc tctgctggaa
    12661 ggtcgtctgg acaacgttgt ataccgtatg ggcttcggtg ccactcgtgc agaagcacgt
    12721 cagctggtta gccataaagc aattatggta aacggtcgtg ttgttaacat cgcttcttat
    12781 caggttagtc cgaatgacgt tgtaagcatt cgtgagaaag cgaagaagca gtctcgcgtg
    12841 aaagccgctc tggagctggc tgagcagcgt gaaaagccaa cttggctgga agttgatgct
    12901 ggcaagatgg aaggtacgtt taagcgtaag ccggagcgtt ctgatctgtc tgcggacatt
    12961 aacgaacacc tgatcgtcga gctttactcc aagtaaagct tagtaccaaa gagaggacac
    13021 aatgcagggt tctgtgacag agtttctaaa accgcgcctg gttgatatcg agcaagtgag
    13081 ttcgacgcac gccaaggtga cccttgagcc tttagagcgt ggctttggcc atactctggg
    13141 taacgcactg cgccgtattc tgctctcatc gatgccgggt tgcgcggtga ccgaggttga
    13201 gattgatggt gtactacatg agtacagcac caaagaaggc gttcaggaag atatcctgga
    13261 aatcctgctc aacctgaaag ggctggcggt gagagttcag ggcaaagatg aagttattct
    13321 taccttgaat aaatctggca ttggccctgt gactgcagcc gatatcaccc acgacggtga
    13381 tgtcgaaatc gtcaagccgc agcacgtgat ctgccacctg accgatgaga acgcgtctat
    13441 tagcatgcgt atcaaagttc agcgcggtcg tggttatgtg ccggcttcta cccgaattca
    13501 ttcggaagaa gatgagcgcc caatcggccg tctgctggtc gacgcatgct acagccctgt
    13561 ggagcgtatt gcctacaatg ttgaagcagc gcgtgtagaa cagcgtaccg acctggacaa
    13621 gctggtcatc gaaatggaaa ccaacggcac aatcgatcct gaagaggcga ttcgtcgtgc
    13681 ggcaaccatt ctggctgaac aactggaagc tttcgttgac ttacgtgatg tacgtcagcc
    13741 tgaagtgaaa gaagagaaac cagagttcga tccgatcctg ctgcgccctg ttgacgatct
    13801 ggaattgact gtccgctctg ctaactgcct taaagcagaa gctatccact atatcggtga
    13861 tctggtacaa cgtaccgagg ttgagctcct taaaacgcct aaccttggta aaaaatctct
    13921 tactgagatt aaagacgtgc tggcttcccg tggactgtct ctgggcatgc gcctggaaaa
    13981 ctggccaccg gcaagcatcg ctgacgagta accggatcac aggttaaggt tttactgaga
    14041 aggataaggt catgcgccat cgtaagagtg gtcgtcaact gaaccgcaac agcagccatc
    14101 gccaggctat gttccgcaat atggcaggtt cactggttcg tcatgaaatc atcaagacga
    14161 ctctgcctaa agcgaaagag ctgcgccgcg tagttgagcc gctgattact cttgccaaga
    14221 ctgatagcgt tgctaatcgt cgtctggcat tcgcccgtac tcgtgataac gagatcgtgg
    14281 caaaactgtt taacgaactg ggcccgcgtt tcgcgagccg tgccggtggt tacactcgta
    14341 ttctgaagtg tggcttccgt gcaggcgaca acgcgccgat ggcttacatc gagctggttg
    14401 atcgttcaga gaaagcagaa gctgctgcag agtaatctga agcaacgtaa aaaaacccgc
    14461 cccggcgggt ttttttatac ccgtagcatc cccacttatc tacaatagct gtactctttt
    14521 tgttcatccc ctggagtatt tatgtggtta cttgaccagt gggcagagcg tcatatagca
    14581 gaagcgcaag cgaaaggtga gtttgataac ctggcaggta gcggcgaacc attgatactg
    14641 gatgatgatt ctcatgtgcc accggaatta cgtgcggggt atcgcttgct gaagaatgcc
    14701 ggttgcttac cgccagaact tgagcagcgg agggaagcaa ttcagcttct ggatatcctg
    14761 agaggtatcc gtcacgatga tccgcaatat caagaggtta gccgtcgatt gtcattactg
    14821 gaattgaagc tgcgacaagc tggattgagt accgattttt tacgcggcga ttatgctgac
    14881 aagttgttgg acaaaatcaa cgataactag tggagtatgt atgtatcgca ttggtgagct
    14941 ggcaaaaatg gcggaagtaa cacctgacac gattcgttat tacgaaaaac agcagatgat
    15001 ggagcatgaa gtgcgtactg aaggcgggtt tcgcctgtat accgaaagcg atctccagcg
    15061 attgaaattt atccgccatg ccagacaact aggtttcagt ctggagtcga tccgcgagtt
    15121 gctgtcgatc cgcatcgatc ctgaacacca tacctgtcag gagtcaaaag gcattgtgca
    15181 ggaaagattg caggaagtcg aagcacggat agccgagttg cagagtatgc agcgttcctt
    15241 gcaacgcctt aacgatgcct gttgtgggac cgcccatagc agtgtttatt gttcgattct
    15301 tgaagctctt gaacaagggg cgagtggcgt taagagtggc tgttgatttt ttgcactggc
    15361 aggattacac tcgcgccgta aaataaccaa ttggagtttt tatgagccga tatcagcata
    15421 ctaaagggca gataagggat aatgcgatag aagcattact acatgatccc ttattccgac
    15481 agcgcgtaga gaaaaataag aaggggaaag gcagttacat gcgaaaagga aaacatggca
    15541 atcgggggaa ctgggaggcc agtggcaaga aagtaaatca cttttttacc actggtcttc
    15601 tgctttcagg cgcttgttaa gagcggttat tctgctcttt cagcaaatca cgaatttctg
    15661 ccagtaatac ttcttcttta gttggtgcag gtgcggcagc tggttcttct tttttccgat
    15721 tcagtttgtt gattagctta atcgccataa agatggcaaa ggccacaatc agaaaatcaa
    15781 agacgttttg aatgaagaca ccgtaatgca tcacaacagc agggatatcc ccctgcgcat
    15841 cgcgtagcgt gacagcaaac tgtttaaagt cgatcccgcc aattaataag cccagaggtg
    15901 gcatgatgat atcggcaacc agtgaagata caatcttccc gaatgccgca ccgataatga
    15961 cacccaccgc caaatccacc acgttcccgc gcatcgcaaa ttcgcgaaat tctttaataa
    16021 tgctcatgtt attctcccta tgaagccgac aaccataagt ctaacaaatg ttaagccatt
    16081 ttcctgccag gaatgaattt aattaatcct tgataatcaa agggaaataa taaggcgtca
    16141 ttagacgcct tattaattac aagaagaaag ggcttggctg gaagagtctt tcgacgtcgg
    16201 taataaactt tttatctgtg aggaacataa ttacgtgatc gccttgctca atgcgcagat
    16261 tgtcattggc aatcatcacg tcgtttccac gtaccaccgc tccaataatc gttcctggcg
    16321 gtagcttgat ttcgtcaatg actctgccga caacgcgtga ggtgctttca tcaccgtgag
    16381 caacggcttc aatagcttct gctacgccgc ggcgcaatga ggaaacacca acaatatctg
    16441 cttttcgcac atggctaagc aacgcagaaa tagttgcttg ttgtggtgaa attgcaatat
    16501 cgatcacgct cccctgaacc agatccacat aagcgcgacg ctggatcaat accatcacct
    16561 ttttcgcacc catacgtttg gcaagcatgg cggacatgat attggcctcg tcatcgttgg
    16621 tgacggcaat aaacagatca acttgatcga tatgttcttc ggccagcagt tcttgatccg
    16681 acgcatcacc aaaaaagacg atcgtattct gcaacttttc cgccagttcg gcagcgcgct
    16741 gctgattacg ttcgatgagt ttaacgctgt aatctttttc cagacgacgc gccagccctg
    16801 caccgatatt accgccacca accagcatga tccgcttata cggtttttcc agtcgctgta
    16861 attcactcat caccgcgcgg atatgctgtg aagcggcaat aaagaacact tcatcaccag
    16921 cttcaacaat ggtcgaacct tgtggacgaa tggggcgatc gtggcggaaa attgctgcca
    16981 cacgagtatc gatatgtggc atatgttcgc gcatggtcga aagtgcatta ccaatcagcg
    17041 ggccgccata ataggcttta actacagcga ggctgacttt accctcagcg aagttcacca
    17101 cctgcaatgc gcctggatac tcaatcagtc ggtaaatatt atcgataacc aactgctctg
    17161 gtgcgatcag atgatcaatc ggtacagcat ctgaatgaaa tagcttatcg gcatcgcgta
    17221 cgtagtctgg tgagcggatg cgagcgatgc gattaggggt gttgaaaagt gagtaggcta
    17281 cctggcaggc aaccatattg gtttcatctg aactggttac agcaaccagc atatcggcgt
    17341 cgtcggcacc tgcctcccgc aatacgcgtg gatgagagcc atgcccctgc acgactcgca
    17401 ggtcaaattt atcctgcaag gtccgcagac gctcaccgtt ggtatcgaca acagtaatat
    17461 cgttgttctc gccaaccagg ttttccgcca gtgtgccgcc aacctggccg gcacccagaa
    17521 tgataatttt catcagtctc gacccgttat ctcatcactt tttgattagc ttagcgtaaa
    17581 agaagccgtc gccctcttcg gcaccaggca gattttgttt acccggttgc tctggtgctc
    17641 ctgtttcgca aagttcggca tcagcggtac gttgcaaaaa agctttaatc tgcaggctat
    17701 tctcttccgg taacaccgaa caggtggcat agaccagggt tccaccggat tttaaatgcg
    17761 gccaaatggc gtcgagaatt tcagactgca attgcgcgag ttccgggata tcgcgatcgc
    17821 gacgtaacca tttaatatcc ggatggtgac gaatcacccc cgttgctgaa caaggcgcat
    17881 ctaataaaat gcgatcaaac tgttgctcgc cacaccattg ggaagggtaa cggccatcac
    17941 cttgtttcac ggttgccttc ataccaaggc gttttaaatt gtcgtaaacg cgagagaggc
    18001 gctgttcgtc aatatcaacc gcaacaacct gcgcttctgg tgccacctca aggatatgcg
    18061 ttgttttacc gccgggggcg gcacaaagat ccagaatgtg ttcaccgttt tgtggcgcaa
    18121 gccaggtcat gcaaccttgt gctgatgcat cctgaacggt aacccatccg tcttcaaaac
    18181 caggtagcgc atgaacaggt gcaggtgttt ccagacgtac agcatcaggg taatccgcat
    18241 gcgggaaacc tttcattcct gcttcatcca gcaatgcaag ccagctgtcg cgggaatgat
    18301 gcgtacgatt aacgcgcagc cacattggcg gacgctggtt attggcttcg acgatggatt
    18361 gccactgctc tggatacgct ttttgcagac gcttcagcaa ccaggaagga tgcagataac
    18421 gtgcatcact ggcattaaac ttggctaata actcttcttg ctgacgctgg aactggcgta
    18481 atacaccgtt aatcaaccct ttaagttgcg gacgcttaat tgcgatagcg ccttcaaccg
    18541 tttcagccag cgcagcatga ggtggaatgc gggtataaag cagttgatac aaaccaacca
    18601 taatcaggta atgcacagtg cgctgtttgc cggtcatcgg acgggccatt aacttattaa
    18661 tcagccagtc taactgcgaa agcgtacgca gtacgccaaa gcacaactct tgaagaagtg
    18721 ctttgtcttt atcagaaact ttttgctgga gcggtggcag aatgttgctt aatgattgcc
    18781 cttgctcgac gacttgttca acggcctggg ccgccatgct acgtaaatta cgttgttttt
    18841 tcataagtat aaaaatgccc ggtaagaccg ggcttagaag agtggactat caggccagac
    18901 ggttgcccgg aacaaaccat tcccgacgag aattcaggag gtcttgcgcg ctcatcgctt
    18961 tcttacccgc aggttgtaac gagagcagat tcaggattcc atcaccagtt gcaacctgaa
    19021 tgccttgttt gttggcttca aggatcgttc ctggtgcagc gttggttgcc gtatcaatga
    19081 ccgacgcttt ccagacttta accggctgtc tttcaatttc cagccagctc attggccatg
    19141 gattgaaagc gcgaatgcag cgttcaagct gtgctgccga aagtgaccag tcaatacgcg
    19201 cttcttcttt actcaacttt tcggcgtaag tgacaagagt ttcgtcctga acttctggtt
    19261 tcgccgtgcc gtctgccagt tgtttcaacg tggtgataag cccttgtggg ccaagctctg
    19321 ccagcttgtc gtacagcgta ccactggtat cttctgcagt aatcgggcag gagagcttat
    19381 agagcatgtc accggtgtct aaaccgacat ccatttgcat aatggtcaca ccagtttctg
    19441 catcacccgc ccatagtgag cgttggattg gtgcagcacc gcgccagcgt ggcagcagtg
    19501 aaccatgaac gttgatacag ccaagacgcg gcatctccag cactgcttta ggcagaatta
    19561 agccataggc gacgacgacc ataacatcag cctgcagatc ggcgaccagt tgctggtttt
    19621 cttgtggacg cagggaaaca ggttgaaaaa cgggcagacc tttttcctca gccagaactt
    19681 taaccgggct gggcatcagt tttttaccgc gtcctgccgg tcggtctggc tgggtgaaca
    19741 cgccaacgac gttatgacca gaagacaaca gcgcgtcgag atgacgcgct gcaaagtcag
    19801 gtgtacccgc aaaaataata cgtagtgatt ctgacacgtt agttcttatc cttaagcccg
    19861 ggctttcaga cgatccagtt tttcaacttt ctgacgaata cgttgttgtt tcaacggtga
    19921 cagataatcc ataaacagtt tgccgaccag gtgatccatc tcatgctgaa tacagatggc
    19981 taacagaccg tctgcttcca attcaaatgg tttaccgtcg cggtccaggg cgcgaatttt
    20041 aactttctct gcgcgtggca ctaaagcacg ttgtttaggg atcgacaggc aaccttcttc
    20101 aatgcctgtt tcgccgcttt tttctaaaag ctccggattg attaacacca gccgttcgtc
    20161 acggttttcc gaaacatcaa taacaatgat acgttgatgg atatcaacct gggttgccgc
    20221 caggccaata ccttcttctg cgtacatcgt ctcgaacata tcatcgacga tacgctgaat
    20281 ttctgcattc acttcttcta ccggtttagc aactttgcga agccgctcgt ccggaatatg
    20341 taacacttgc aaaactgaca taaatctcca gagatgtgtt caggagttag aaagattatt
    20401 tcttctattc tagacaaatc cccctctgat tgacagcatc actgaccaat cgcaaagatt
    20461 gctaaggctg cttatggcag ggagataagg atggtcgata cagatatttg gctgcgttta
    20521 atgagcatca gcagcttgta cggcgatgat atggtccgta tagctcactg gctggcaaaa
    20581 cagtcgcata ttgatgcggt tgtattgcag caaacagggc ttacattgcg gcaggcacaa
    20641 cgctttcttt catttccgcg aaagagtatc gaaagctcac tttgttggtt ggagcaaccc
    20701 aatcatcatt taatccctgc ggacagcgaa ttttatcctc ctcaacttct ggcgacgaca
    20761 gattaccccg gcgcactgtt tgttgaagga gaactgcacg cgctgcattc atttcagctt
    20821 gccgtagtgg ggagtcgggc gcattcatgg tatggcgagc gatggggacg attattttgc
    20881 gaaactctgg ctacgcgtgg agtgacaatt acgagtggac tggcgcgtgg aatcgatggt
    20941 gtggcgcata aagcggcctt acaggtaaat ggcgtcagca ttgctgtatt ggggaacgga
    21001 cttaatacca ttcatccgcg ccgccatgcc cgactggcta ccagtttgct tgaacatggt
    21061 ggggcacttg tctcggaatt tcccctcgat gttccacccc ttgcttacaa tttcccacga
    21121 agaaatcgca ttatcagtgg tctaagtaaa ggtgtactgg tggtggaagc ggctttgcgc
    21181 agtggttcgt tggtgacagc acgttgtgcg cttgagcagg ggcgtgaagt ttttgccttg
    21241 ccaggaccaa tagggaatcc gggaagcgaa gggcctcact ggttaataaa acaaggtgcg
    21301 attcttgtga cggaaccgga agaaattctg gaaaacttgc aatttggatt gcactggttg
    21361 ccagacgccc ctgaaaattc attttattca ccagatcagc aagacgtggc attgccattt
    21421 cctgagctcc tggctaacgt aggagatgag gtaacacctg ttgacgtcgt cgctgaacgt
    21481 gccggccaac ctgtgccaga ggtagttact caactactcg aactggagtt agcaggatgg
    21541 atcgcagctg tacccggcgg ctatgtccga ttgaggaggg catgccatgt tcgacgtact
    21601 aatgtatttg tttgaaacct atattcacac agaagctgag ttgcgtgtgg atcaagacaa
    21661 acttgaacag gatcttaccg acgcaggatt tgatcgagaa gatatctaca atgccctgct
    21721 ttggctggaa aagcttgcgg attatcagga aggactgaca gaaccgatgc aactggcctc
    21781 tgatccactc tccatgcgta tttatacccc tgaggagtgt gaaagactgg atgccagctg
    21841 tcgtggtttt ctgcttttcc ttgagcaaat tcaggtgctt aaccttgaaa tccgtgaaat
    21901 ggtgatagag cgagtgctcg cgctggatac cgcagagttc gacctggaag acctgaaatg
    21961 ggtaatcctg atggtgttgt tcaatattcc gggctgcgaa aatgcgtacc agcaaatgga
    22021 agaattactc tttgaagtga atgaaggtat gctgcattaa tcattccttt aattcagcat
    22081 aagttgttat ggcgaaatca gcactgttca cggtgcgtaa taatgagtcc tgcccaaagt
    22141 gcggggctga actggttatt cgatccggga aacacggtcc gtttcttgga tgctcacagt
    22201 atccggcgtg tgactacgtc cgtcctctga aatcttcagc ggatggacat attgtcaaag
    22261 ttctggaggg gcaggtttgc cctgcatgtg gcgcaaatct ggtattacgc cagggacgct
    22321 ttggtatgtt tattggttgc agtaactacc ctgaatgcga acataccgaa cttatcgata
    22381 aaccggacga aacagcaatt acatgccccc aatgtcggac gggccatctg gtccagcgcc
    22441 gctcccgtta tggcaaaaca tttcactcct gtgatcgcta cccggagtgt caatttgcca
    22501 ttaacttcaa acccatagct ggagaatgcc ctgagtgtca ttatccacta ctcatcgaaa
    22561 agaaaaccgc gcagggtgta aaacactttt gtgccagtaa acaatgtgga aagccggttt
    22621 cggcggaata ataacgtgaa taataacctg caaggagacg ctatcgcagc tgcgatagat
    22681 gtcctcaatg aagaacgtgt catcgcctat ccaacggaag ccgttttcgg tgttgggtgc
    22741 gatcctgata gcgaaacagc agtgatgaga ctgttggagt taaaacagcg tccggttgat
    22801 aaggggctga ttttaatcgc ggcaaattac gagcagctta aaccctatat tgatgacacc
    22861 atgctgactg atgcgcagcg tgaaaccatt ttttcccgct ggccaggtcc tgtcaccttt
    22921 gtctttcccg cgcctgcgac aacaccgcgc tggttgacgg gccgctttga ttcgcttgct
    22981 gtacgagtca ccgaccatcc gttggtggtt gctttgtgcc aagcttatgg taaaccgctg
    23041 gtttctacca gtgccaactt gagtggattg ccaccttgtc gaacagtaga cgaagttcgc
    23101 gcacaatttg gcgcggcgtt cccggttgtg cctggtgaaa cgggggggcg tttaaatcct
    23161 tcagaaatcc gcgatgccct gacgggtgaa ctgtttcgac aggggtaaca taatggaaac
    23221 ctatgctgtt tttggtaatc cgatagccca cagcaaatcg ccattcattc atcagcaatt
    23281 tgctcagcaa ctgaatattg aacatcccta tgggcgcgtg ttggcaccca tcaatgattt
    23341 catcaacaca ctgaacgctt tctttagtgc tggtggtaaa ggtgcgaatg tgacggtacc
    23401 ttttaaagaa gaggcttttg ccagagcgga tgagcttact gaacgggcag cgttggctgg
    23461 tgctgttaat accctcaagc ggttagaaga tggacgcttg cagggtgaca ataccgatgg
    23521 tataggtttg ttaagcgatc tggaacgtct gtcttttatc cgtccgggtt tacgtattct
    23581 gcttatcggc gctggtggag catctcgcgg cgtactacta ccactccttt ccctggactg
    23641 tgcggtgaca atcactaatc ggacggtatc ccgtgcggaa gagttggcta aattgtttgc
    23701 gcacactggc agtattcagg cgttgggtat ggacgaactg gaaggtcatg agtttgatct
    23761 cattattaat gcaacatcca gtggcatcag tggtgatatt ccggcgatcc cgtcatcgct
    23821 cattcatcta ggcatttatt gctatgacat gttctatcag aaaggaaaaa ctccttttct
    23881 ggcatggtgt gagcagcgag gctcaaagcg taatgctgat ggtttaggaa tgctggtggc
    23941 acaggcggct catgcctttc ttctctggca cggtgttctg cctgacgtag aaccagttat
    24001 aaagcaattg caggaggaat tgtccgcgtg aatcaggcca tccagtttcc ggacagggaa
    24061 gagtgggacg agaataaaaa atgtgtatgt tttcccgctc tcgtgaatgg tatgcaactg
    24121 acatgcgcga tctctggcga gagtctggcg tatcgcttta ctggagatac gccagaacag
    24181 tggttagcga gttttcgtca gcatcgctgg gacctggaag aagaagcgga aaacttaatt
    24241 caggaacaaa gtgaagatga tcaaggctgg gtctggttac cctgatccag atattcgtcc
    24301 ttccatttca cgtaattatt cgcggaatag agtaacccag ccttctcttc atcacttaac
    24361 gggcggatct gtttgacggg gctaccgaga tacagatatc cgctctccag ccgtttattt
    24421 tgtgggacca gactacccgc accaatcatc acatcatctt ctactattgc gccatcaagt
    24481 aaaattgagc ccatcccaac caaaactcga ttgccaatgg tgcagccgtg gagcatcacc
    24541 ttgtgaccaa cagtgacatc ttcgccaatg gttaatgggt tgccatctgg gttgtacgag
    24601 gatttatgag tgacatgcaa catactgcca tcctggatat tggtgcgtgc tccgatctgt
    24661 acataatgta catctccacg aatcacaacg agcggccaga tccccacatc atcagccaga
    24721 cgaacgtcac caatcacgac actgctatcg tcgatcatta cgcgctgacc gatttgtgga
    24781 aaaagatcgc ggtatgggcg taaaacatca gacatactta cctcagcaat aaatgattta
    24841 ctaatgactt tgggggcatt attgggcttg tgcaagtctt ttagtatgca aaaaagcacc
    24901 gttttgtgtg cgattgcagc aaaaagggtg aaaaaacaac aaacagaaaa aaagatcaaa
    24961 aaaatacttg tgcaaaatat tgggatccct ataatgcgcc tccgttgaga cgacaacgtg
    25021 aaacacttca caggatggtc ggaacaacga agagaaaaaa tcctgaaatt caggggtgac
    25081 tctgaaagag gaaagcgtaa tatacgccac ctcgcgacag tgagctgaaa gccgcgtcgc
    25141 aactgctctt taacaattta tcagacaatc tgtgtgggca ctcgaagata cggattctta
    25201 acgtcgcaag acgaaaaatg aataccaagt ctcaagagtg aacacgt
//
LOCUS       DAJVUN010000046        25247 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.046, whole genome shotgun sequence.
ACCESSION   DAJVUN010000046 DAJVUN010000000
VERSION     DAJVUN010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25247
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.046"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..114
                     /locus_tag="OQQ76_001571"
     CDS             <1..114
                     /locus_tag="OQQ76_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001764249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS1968116.1"
                     /translation="HHDELHADTVAFEEKYGSQLELIFRFIDRALAIGVLA"
     gene            132..497
                     /locus_tag="OQQ76_001572"
     CDS             132..497
                     /locus_tag="OQQ76_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706616.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
                     /protein_id="HCS1968117.1"
                     /translation="MRDIQMVLEHWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQ
                     CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVGGMTFMALARKHGRSDCWVGRLLQKA
                     EGVVDGMLMMLEIELEMDR"
     gene            complement(582..1028)
                     /locus_tag="OQQ76_001573"
     CDS             complement(582..1028)
                     /locus_tag="OQQ76_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001038609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968118.1"
                     /translation="MNKMTVLLLSATIISGCTSSVPLIKKTQSGKPEGVYQNTTKDKV
                     KDALVNYCNSRGLIIYNADNSSVICGKELEGGSAVFGQMLIGNAYSTTPVSKVKFTIA
                     QVNNDTKVWADMWMETQMAMGQVQQMAITDNASKNTIQQRLDELKP"
     gene            1299..1502
                     /locus_tag="OQQ76_001574"
     CDS             1299..1502
                     /locus_tag="OQQ76_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000917730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968119.1"
                     /translation="MLKQQDMTETAAAVLHFLPADKWVTPRMMTRTTGVSEARCQLIL
                     TQLVLAGLAKDNGGYGNKFRRCQ"
     gene            1653..2705
                     /locus_tag="OQQ76_001575"
     CDS             1653..2705
                     /locus_tag="OQQ76_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000799668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1968120.1"
                     /translation="MKNTVKINSVDLINADCLHFIQSLPDDSIDLIVTDPPYFKVKPN
                     GWDNQWKGDEDYLKWLDHCLAQFWRVLKPAGSLYLFCGHRLASDIEIMMRERFNVLNH
                     IIWAKPSGRWNGCNKESLRAYFPATERVLFAEHYQGPYRGKSDGYAAKERELKQHIMA
                     PLISYFRDARAELGITAKQIAEATGKKNMVSHWFGASQWQLPNEADYRKLQALFSRIA
                     AEKFQEQQLEQPHHQLVASYDSLNRKYSELLDEFKSLRRYFSVSVSVPYTDVWMHKPV
                     QFYPGKHPCEKPADMLRQIINASSRPGDLVADFFMGSGSTIKAAMALGRRALGVELES
                     ERFNQTVKEINELVGK"
     gene            2773..2988
                     /gene="essD"
                     /locus_tag="OQQ76_001576"
     CDS             2773..2988
                     /gene="essD"
                     /locus_tag="OQQ76_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage lysis protein EssD"
                     /protein_id="HCS1968121.1"
                     /translation="MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGS
                     LVFGLLTYLTNLYFKIKEDKRKAARGE"
     gene            2993..3343
                     /locus_tag="OQQ76_001577"
     CDS             2993..3343
                     /locus_tag="OQQ76_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS1968122.1"
                     /translation="MTQNYELIVKGIRNFENKVTVTLALRDKKRFDGEIFDLDISLDR
                     VEGAALEFYEAAARRSIRQVFLDVAAGLCEGDEQSPEKRPVILDAQNVWITYKGKLPG
                     RITGSLKTPPESQP"
     gene            3407..3940
                     /locus_tag="OQQ76_001578"
     CDS             3407..3940
                     /locus_tag="OQQ76_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706619.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1968123.1"
                     /translation="MNAKIRYGLSAAVLALIAVGAPAPDILDQFLDEKEGNHTTAYRD
                     GSGIWTICRGATMVDGKPVFPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VIRRDQESALACWGIDQ"
     gene            3937..4404
                     /locus_tag="OQQ76_001579"
     CDS             3937..4404
                     /locus_tag="OQQ76_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HCS1968124.1"
                     /translation="MSRVAAIIYALVICIIVCLSWAVNHYRDNAIAYKEQRDKKVSEL
                     KQATATITGMQQRQRAADALDAKYTKELADAKAENDALRRKLDNGGRVFVKGKCPVPT
                     SAEASSASGMGNDATVELSPVAGRNVLGIRDGIISDQTALRTLQEYIWTQCLR"
     gene            4392..4544
                     /locus_tag="OQQ76_001580"
     CDS             4392..4544
                     /locus_tag="OQQ76_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968125.1"
                     /translation="MPSMIAIILLIIFHIWLCRQGGDHFWSESRLNISLLMLDIEHLA
                     RGKGLR"
     gene            5220..5714
                     /locus_tag="OQQ76_001581"
     CDS             5220..5714
                     /locus_tag="OQQ76_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1441 family protein"
                     /protein_id="HCS1968126.1"
                     /translation="MDRELKNLTLNISQLAALSGVHRQTAAARLQNLPVAGGHESNLK
                     LYRVVDIVSAFLALPPPVAEGEMDAHERKAWYQSERERLKFEQETAQLIPASDVRREF
                     AIWAKAVVQVLETLPDILERDCGLQPAAVSRVQSIIDDLRDQIALRVTEAGADDEEEL
                     QREE"
     gene            5714..7816
                     /locus_tag="OQQ76_001582"
     CDS             5714..7816
                     /locus_tag="OQQ76_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS1968127.1"
                     /translation="MLNQETAKAARTDSGYILRAPRRMRVADAVAQYMRVPMGAGNSV
                     PWDPLVAPYVIEPMNCLASREYDAVIFVGPARTGKTIGLIDGWVIYNVICDPADMLII
                     QMTEEKAREHSKKRLARTFRVSPEVVSRLSPNKNDNNVYDRTFLAGNYLKIGWPSVNI
                     MSSSDYKCVALTDYDRFPEDIDGEGDAFSLASKRTTTFMSSGMTLVESSPGRDVKDVK
                     WRRTSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGEYFQPCGDVVAGFRDIADPVLAS
                     EAAYIQCPSCSGRIMPEQKRELNGRGVWLRDGESINADGSRYGDPRRSRIASFWMEGP
                     AAAYQTLSQLVYKLLTAEQEYETTGSEETLKTVINTDWGLPYLPRASMEQRKSELLEQ
                     RAEPVPSRSVPDGVNFLVATVDVQAGRHRRFVVQVTGYGSRGERWIIDRYNITQSLRG
                     DSDGESQRIDPASYPEDWDVLLTDVFHKSWPLASDPSQQMRLMAMAVDSGGEDGVTDN
                     AYKFWRRCRRDGLGKRIYLFKGDSIRRAKLITRTFPDNTGRTGRRAQAAGDVPLWLLQ
                     TDALKDRVNNALWRDSPGPGYVHFPDWLGSWFYDELTYEERSSDGKWSKPGRGANEAF
                     DLMVYAEALVILHGYEKIRWPDAPEWASRETWLECVPDSTEPSPTPEPVSTPVKKQKR
                     KKTVTDDVNPWLTSGGWL"
     gene            7813..8025
                     /locus_tag="OQQ76_001583"
     CDS             7813..8025
                     /locus_tag="OQQ76_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001072975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968128.1"
                     /translation="MNQNDIEAMIQRYTEAEMAVLDGKSVTFNGQQMTMENLSEIRQG
                     RQEWERRLAALITRRRGHPGYRLARF"
     gene            7953..9500
                     /locus_tag="OQQ76_001584"
     CDS             7953..9500
                     /locus_tag="OQQ76_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011703754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1968129.1"
                     /translation="MGAPPCGSDYTTTGASRVPAGEVLMAILDDVIGVFSPGWKAARL
                     RSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDK
                     LEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLM
                     LRTWLRDGEVFAQMVSGRINSLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDD
                     WGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQMRGTSLLSGVLIRLSAL
                     KEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSKDKERELTIQPGIIYDDLKPGE
                     EIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGY
                     LILQDWFIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKE
                     AEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKLDLVFDTDPASDKGGS
                     SAATKRQ"
     gene            9478..11505
                     /locus_tag="OQQ76_001585"
     CDS             9478..11505
                     /locus_tag="OQQ76_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308856.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HCS1968130.1"
                     /translation="MPQRNDSSRSTPTTSPKNNSWFRMQAGHQSDADIYIYDEIGFWG
                     VTAKQFISDLNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAASM
                     ASVIAMVGNPVIMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTG
                     KTTDEIAAMLADETWMSGAECLAHGFADQVTPAVKAMACIQSKRTEEFKKMPESIRNM
                     ITPPRNSAPRVQDDEPAASRTPVQAAAPVVDENSIRAQVLAEQKARVNGINDLFAMFG
                     GRYQTLQAQCLADPECSLEQAREKLLNEMGRESTPSNKNTPAHIYAGNGNFVGDGIRQ
                     ALMARAGFEKTERDNVYNGMTLREYARMSLTERGIGVSSYNPMQMVGAAFTHSTSDFG
                     NILLDVANKAILQGWEDAPETYEQWTRKGQLSDFKIAHRVGMGGFSALRQVREGAEYK
                     YVTTGDKQATIALATYGELFSITRQAIINDDLNMLTDVPMKLGRAAKSTIADLVYAIL
                     TSNPKISTDNVSLFDKAKHANVLESAAMDVASLDKARQLMRVQKEGERHLNIRPAFVL
                     VPTAMESVANQVIRSSSVKGADINAGIINPVKDFATVIAEPRLDDNSQTTFYLAASKG
                     SDTIEVAYLNGVDTPYIDQMEGFSVDGVTTKVRIDAGVAPVDHRGLVKCTA"
     gene            11592..11915
                     /locus_tag="OQQ76_001586"
     CDS             11592..11915
                     /locus_tag="OQQ76_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308857.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HCS1968131.1"
                     /translation="MAKNFVEEGKTVAIVASAAISSGDLVQVGDVFAVALTDIPQGET
                     GDGMTEGVFMLPKLKTDDMKTGKKVYLKSGKVQLTNSGSDPLVGVVWADAGTSAEEVP
                     VKLNV"
     gene            11908..12183
                     /locus_tag="OQQ76_001587"
     CDS             11908..12183
                     /locus_tag="OQQ76_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA breaking-rejoining protein"
                     /protein_id="HCS1968132.1"
                     /translation="MSDPFSRLAARMDAITVRKMGKTASINDVDMTVIPGETLAELNA
                     LSGPAVSLVVFSSGYRPRRGDRVVYDGQQWTVTRHERFNGKPMIFIE"
     gene            12195..12773
                     /locus_tag="OQQ76_001588"
     CDS             12195..12773
                     /locus_tag="OQQ76_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1968133.1"
                     /translation="MKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAG
                     NTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNLPAIKLGTARVRLTRR
                     GGKLQYRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPLSGPLTQ
                     AFEDARDRIIAAEMPKQLGYALKQQLRLWLTR"
     gene            12770..13171
                     /locus_tag="OQQ76_001589"
     CDS             12770..13171
                     /locus_tag="OQQ76_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1968134.1"
                     /translation="MNRHTQIRQVVLARLREQCGDSATFFDGLPAFVDAQELPAVAVW
                     LSDALYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLID
                     TLIPLGFNYQRDNEMATWAMAEITYQITYTN"
     gene            13182..13925
                     /locus_tag="OQQ76_001590"
     CDS             13182..13925
                     /locus_tag="OQQ76_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1968135.1"
                     /translation="MTTPNPLAKTKGAGTTFWMYTGKGDAFANPLSDTDWLRLAMVKD
                     LQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDS
                     GEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVS
                     VTGLTVAPASASVKVGATTTLTFTVKPDGASDKAISVHSTDPQTATVTLNGLVATVKG
                     VKQGSVSIVGMTADGNFVAVAAVTVSAAG"
     gene            13986..14372
                     /locus_tag="OQQ76_001591"
     CDS             13986..14372
                     /locus_tag="OQQ76_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS1968136.1"
                     /translation="MFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAGEG
                     ELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLYASVITTWSYDALGAGAEM
                     VLSLSGMGAIDNAGDLEHEVLTPEKS"
     gene            14381..14710
                     /locus_tag="OQQ76_001592"
     CDS             14381..14710
                     /locus_tag="OQQ76_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
                     /protein_id="HCS1968137.1"
                     /translation="MQFVMRLAREFRRADWRRMLSEMSATELGEWGDYFRMQSFSDVW
                     MDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYG
                     PDSQPGH"
     gene            14682..17738
                     /locus_tag="OQQ76_001593"
     CDS             14682..17738
                     /locus_tag="OQQ76_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1968138.1"
                     /translation="MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQ
                     RFMERQTQAARQTTQAASSAATAASVHAQTVEKNAQAHERMAREVEKTRQRMEALSQK
                     MREEQAQAMALAEAQDKAAAAFYRQIDSVKQASAGLQELQRIQQQIRQARNSGGIGQQ
                     DYLALISEVTAKTRVLTQAEEEATRQKVAFIRQLKEQATRQNLSSSELLRAKAAQLGV
                     SSAAEVYIRKMEQAGKATHSLGLKSAAARQEIGVLIGELARGNLGALRGSGITLANRA
                     GWIDTLMSPKGMMLGGVIGGIAAAVYGLGKAWYDGQKEGEEFNRQLSLTGHYAGVTAG
                     QLWTLSRAISGNGITQHAAAGALAQVVGSGAFRGNDIGMVARAAAQMERSVGQSVSDT
                     INQFKRLKDDPVNAAKALDNELHFLTATQLEQIRVLGEQGRSSDAARIAMSALAEETG
                     RRTADIDNNLNALGSTLKYLSDLWSRFWDAAMNIGREDSLDEQISALQEKVSRAKRLP
                     WTASSSQVEYDQQRLNELQEKKRQKDLQDAKEQAERNYQEQQKRRNAENAALNRMNET
                     EAARHQREIARINAMQYADQAVRDAAIQRENERYEKALASGKKKTRETRNDEATRLLL
                     QYSQQQAQVEGQIAAARQSAGIATDRMTEAHKQLLALQQRISDLDGKKLTADEKSVLA
                     RKDELIQALTLLDVKQQELQKQTALNDLKKKTIQLTSQLAEEERAQRQQHDLDIATVG
                     MGDQQRQRYQVQLSLRQKYQQQLEQLRRDSEQKGTYNTDDYRKAEQALTESLNRQLNE
                     NRRYWQQLEIAQGDWKNGVLRALQNVTEKADNTAGTVEQLFTSAFSSMSDWLATFCTT
                     GKLNFKSFTSSVLSDMSRIMAQIALMKAVKGIASALPFDFVANADGGVYQSADLSRYS
                     GTVVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADIGGSGMAMFAPQYNI
                     EINNDGTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR"
     gene            17738..18067
                     /locus_tag="OQQ76_001594"
     CDS             17738..18067
                     /locus_tag="OQQ76_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1968139.1"
                     /translation="METFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTY
                     SVTIRVRKCEHPSLKAFLERHGGVRAFQWTPPYDWKPIRVVCRKWSASVGALWVTITA
                     DFEQVVA"
     gene            18077..18775
                     /locus_tag="OQQ76_001595"
     CDS             18077..18775
                     /locus_tag="OQQ76_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1968140.1"
                     /translation="MQDISQETHHETTRLTQSAQVVLWEIDLTEVGGERYFFCNEQNE
                     KGEPVTWQGRQYQAYPIQGTGFELNGKGSAARPTLTVSNLHGMVTGMAEDMQSLVGGT
                     VVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLSTPTETDG
                     AVFPGRIMLANTCTWTYRGDECGYHGPAVADEYDQPTSDITKDKCSKCLSGCKFRNNV
                     GNFGGFLSINKLSQ"
     gene            18781..19524
                     /locus_tag="OQQ76_001596"
     CDS             18781..19524
                     /locus_tag="OQQ76_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1968141.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVVSTPEGERYFPCVNISGEPE
                     AYFRMSPEDWLQAEMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGEIHK
                     FRSVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPNFHRGDDWWRHGQNLYLDNLEAT
                     GLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRR
                     THSLWRHRAWHASAFTGIYNDLAAASTFV"
     gene            19461..20069
                     /locus_tag="OQQ76_001597"
     CDS             19461..20069
                     /locus_tag="OQQ76_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019843089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1968142.1"
                     /translation="MARICLYGDLQRFGRRIDLRVKTGAEAIRALSTQLPAFRQKLND
                     GWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLAGAKSGGVFQVVLGAALIAVA
                     WWNPVGWLGAAAVSGMYAAGASMILGGVAQMLAPKARTPTAASTDNGKQNTYFSSLDN
                     MVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR"
     gene            20129..23527
                     /locus_tag="OQQ76_001598"
     CDS             20129..23527
                     /locus_tag="OQQ76_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1968143.1"
                     /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVEGPVDGLKS
                     VLLNSTPVLDSEGNTNISGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR
                     TITSANIDRLRFTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT
                     SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV
                     GVQVDSEQFGSQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTFKPAYSNNMAWCL
                     WDMLTHPRYGMGKRLGAADVDKWALYVIGQHCDQSVPDGFGGTEPRITCNAYLTTQRK
                     AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL
                     KDRHNAVEVNWIDPNNGWETATELVEDTQAILRYGRNVTKMDAFGCTSRGQAHRAGLW
                     LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLD
                     REITLPSSGTTLISLVDGSGNPVSVEVQSVTDGVKVKVSRVPDGVAGYSVWGLKLPTL
                     RQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDQSGTVNGVTPPAVQHL
                     TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQ
                     LALGRYTLTVRAVNAWGQQGDPASVSFRIAAPAAPSRIELTPGYFQITATPHLAVYDP
                     TVQFEFWFSEKRITDIRQVETTARYLGTALYWIAASINIKPGHDYYFYIRSVNTVGKS
                     AFVESVGRASDDAEGYLDFFKGKITESHLGKELLEKVDLTEDNASRLDEFSKEWKDAN
                     DKWNAMWAVKIEQTKDGKHYVAGIGLSMEDTEEGKLSQFLVAANRIAFIDPANGNETP
                     MFVAQGNQIFMNDVFLKRLTAPTITSGGSPPVFSLTSDGKLTAKNADISGSVNANSGT
                     LNNVTINENCQIKGKLSANQIEGDIVKTVSKSFPRTNSYASGTITVRISDDQKFDRQV
                     MIPPVLFRGGKHENFNSNNQQSYWYSTCRLRVTRNGQEIFNQSTTDAQGVFSSVIDMP
                     AGQGTLTLTFTVSSSGANNWTPTTSISDLLVVVMKKSTAGISIS"
     gene            23594..24193
                     /locus_tag="OQQ76_001599"
     CDS             23594..24193
                     /locus_tag="OQQ76_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family protein"
                     /protein_id="HCS1968144.1"
                     /translation="MRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLHASTNVPG
                     SDDLNGINVKYRYEFTDTLGLVTSFSYAGDKNRQLTRYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKKHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF"
     gene            24258..>25247
                     /locus_tag="OQQ76_001600"
     CDS             24258..>25247
                     /locus_tag="OQQ76_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1968145.1"
                     /translation="MAVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPD
                     EAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYEDSRPGTLNDFLGAMTEDDARPEA
                     LRRFELMVEEVARNASAVAQNTAAAKKSASDASTSAREAATHTTDAAGSARAASTSAG
                     QAASSAQSASSSAGTASTKASEASKSAAAAESSKSAAATSAAAAKTSETNAAASQQSA
                     ATSASAATTKASEAATSARDAAASKEAAKSSETNASSSASSAASSATAAGNSAKAAKT
                     SETNARSSETAAGQSASAAAGSKTAAASSASAASTSAGQASASATAAGKSAESA"
BASE COUNT         6131 a         5942 c         7504 g         5670 t
ORIGIN      
        1 catcacgacg agctgcatgc ggataccgtg gcatttgaag agaagtatgg ctcccagctg
       61 gagctgatat ttcgttttat cgatcgtgcg ctggcaattg gcgtgctggc ctgattttgt
      121 ggagaaagtt gatgcgtgat attcaaatgg ttcttgaaca ttggggggca tgggtggcaa
      181 ataatcacga ggatgtcact tggtcgtcta ttgctgcagg atttaaagga ctaatccctt
      241 caaaagtaaa atcccgcccg caatgttgtg acgatgacgc gatgatcatt tgtggatgca
      301 tggctcgcct gaaaaagaac aacagcgatt tgcacgattt attagtggat tattatgtag
      361 gtggtatgac gtttatggcg cttgcccgta aacatgggcg ttctgattgc tgggttgggc
      421 gtttattgca aaaggctgaa ggtgtagttg atggcatgtt aatgatgtta gaaattgagc
      481 tagagatgga tcgttagaag acctcttatt gagggggtaa ttgaatcagt ttaatgtgtg
      541 gggagtcgat ttattctccc cattttattt aattaattta cttaaggttt taattcatca
      601 agacgttgtt ggatagtgtt tttgcttgcg ttgtctgtta tagccatttg ttgtacttgc
      661 cccattgcca tttgagtttc catccacata tcggcccaca cttttgtatc gttattaact
      721 tgagcgatag taaatttgac ttttgatacc ggggttgttg aataggcatt gccgattaac
      781 atttgtccaa aaacagcaga cccgccttcc agttctttac cacatataac actgctgtta
      841 tccgcgttgt aaattatcaa ccctctacta ttgcagtaat tcacaagggc atctttgact
      901 ttatcttttg tcgtattttg ataaaccccc tcaggttttc ctgattgagt tttctttatc
      961 aatggtacgg aagaagtaca acctgaaatg atagttgcgc taagtaataa tacagtcatt
     1021 ttattcatgt ttcttatcca ttgttaaggg catacccaca caattatttt tattggagat
     1081 gaataatcaa ccgtttacaa tcgtaaaaaa tcaaatatgc tgttaagagt ggttacttcg
     1141 ccacacaact taaacccgcc gctgagcggt ttttttgtac ctgtaaacct ggagcagtac
     1201 agtaaacacg ctggtggtcg tgaatactga ctttttatct tgctggcttt ttagacaaga
     1261 gttattggta tgtcatgtta accagaaggg aaaaagacat gctaaaacag caagatatga
     1321 cagaaaccgc cgcagcagtc cttcatttct tacctgctga caagtgggta acgccacgca
     1381 tgatgacgag aactaccgga gtaagcgaag cccggtgcca gttaatactg actcagttag
     1441 ttctggcggg tctggcgaag gataacggcg ggtacgggaa taaattcaga cgctgccagt
     1501 aatggcggtt tcctgctgtg aaaatgggcg gctggtgggt gttggtagca cctgccagcc
     1561 attcgctcat gcttactggt cacaagcgaa ccacggccca ctgctttagc gcaaaagcag
     1621 agtgagccta ccagagttac gcttactgat ccatgaaaaa tactgtaaaa ataaacagtg
     1681 ttgatttaat caacgctgat tgcctgcatt ttattcagtc cctgcctgat gattccattg
     1741 acctgattgt taccgatccg ccgtacttca aggtgaaacc caacggctgg gacaatcagt
     1801 ggaaagggga cgaagattac cttaagtggc tggaccactg tctggcccag ttctggcggg
     1861 tgttaaaacc tgccggaagc ctttacctgt tctgtgggca tcgcctggca tctgatattg
     1921 agatcatgat gcgtgaacgt ttcaacgtgc ttaaccatat catctgggcg aagccgtccg
     1981 gacgctggaa tgggtgtaat aaagaaagtc tgcgcgcata ttttcctgcc acagagcgcg
     2041 ttctgtttgc tgaacattac caggggccat atcgcggcaa aagtgacggc tatgcagcaa
     2101 aagaaaggga actcaaacag cacataatgg caccgctgat atcgtatttc agggatgctc
     2161 gtgccgaact gggtataacg gcaaaacaaa ttgccgaagc cacaggtaag aaaaatatgg
     2221 tttcccactg gtttggtgcc agtcagtggc agttgccgaa tgaggctgac tatcggaagt
     2281 tacaggcact gttttcccgt atagcggcag agaagtttca ggaacaacaa ctggaacaac
     2341 cacaccacca gctggtggca tcttatgatt cactgaatcg taaatattct gaattgctgg
     2401 atgagtttaa atctctccgg cgctatttct ccgtatcagt ctccgtgcct tataccgatg
     2461 tctggatgca taaacccgtt cagttctacc cggggaaaca tccgtgtgag aaaccggcgg
     2521 atatgctcag gcaaataatc aatgccagta gtcgaccagg tgatctggtt gctgattttt
     2581 ttatgggatc cggttccaca ataaaagcag caatggcgct ggggcgtcgg gccttaggtg
     2641 ttgagcttga gtcagagcgg tttaaccaga cagtgaaaga gataaacgag ctggtgggga
     2701 aataatctgg tggccacgtc aggtggcctt tttatttcca ttacacagca cccgcatctg
     2761 cgaggtgggg ttatgaaatc catggataag ttaacaacgg gtgtcgccta tggcacctca
     2821 gcaggtagtg ccgggtactg gtttttacag ttgctcgata aagtcacgcc ctcacagtgg
     2881 gcggcaatag gtgtgctggg tagtctggta tttggcttgc tgacgtatct gacaaacctt
     2941 tatttcaaga ttaaagaaga caagcgtaag gctgcacggg gagagtaatt caatgactca
     3001 aaactatgaa ctgattgtga aagggatccg caattttgag aataaagtta cggtaacttt
     3061 agcgttacgg gacaaaaaac gctttgacgg tgaaattttt gacctggaca tctcgctgga
     3121 ccgtgttgaa ggtgccgcac tggagtttta tgaggcagca gccagaagga gcatcagaca
     3181 ggtcttcctg gatgttgctg ccgggttatg tgaaggggat gagcagtcgc cggaaaagcg
     3241 ccccgtaatt ttagatgcgc agaatgtgtg gataacctac aaaggaaagc taccaggaag
     3301 aattactggt tcgctgaaga ctcctccgga atcacaaccc taagtcactg accggaacag
     3361 ataaacctgt ccgtgggcaa aaaccgataa atcctgataa atatccatga acgcaaaaat
     3421 cagatacggc ctgtcggctg ccgttctggc actgattgcc gtcggtgcgc ccgcgcctga
     3481 tattctcgac cagtttctgg atgaaaaaga aggtaaccac acaacggcat accgcgatgg
     3541 gtccggcatc tggaccatct gtcggggtgc cacgatggtg gatggaaaac ccgtttttcc
     3601 cggaatgaaa ctgtcgaagg aaaaatgcga ccaggtcaac gccattgagc gtgataaggc
     3661 gctggcatgg gtggagcgca atattaaagt accactgacc gaaccacaaa aagcgggtat
     3721 cgcgtcattt tgtccctata acattggccc cggtaagtgt tttccgtcga cgttttataa
     3781 gcggctgaat gctggtgatc gtaaaggtgc atgcgaggcg attcgctggt ggataaaaga
     3841 tggtgggcgc gattgccgca tacgttcaaa taactgctat ggacaggtta ttcgtcgtga
     3901 ccaggaaagc gcattagcct gttgggggat agatcagtga gcagagtcgc cgcgattatt
     3961 tatgctctgg ttatctgcat catcgtctgc ctgtcgtggg cggtcaatca ttaccgtgat
     4021 aacgccatcg cctataaaga acagcgtgat aaaaaagtca gtgagctgaa gcaggcgacc
     4081 gccaccatta ctggcatgca gcagcgccag cgtgctgctg atgcactcga tgctaaatac
     4141 acgaaggagt tagctgatgc gaaagctgaa aatgatgctc ttcggcgcaa gcttgataat
     4201 ggtggccggg tgttcgtcaa aggaaaatgt cctgtgccaa cctcagccga agcctccagc
     4261 gcctccggca tgggcaatga tgccaccgtc gaactctctc cagttgctgg acgaaacgtt
     4321 ctcggtatcc gggacggaat catcagcgac caaacagcac tgagaacgct tcaggaatac
     4381 atctggacgc aatgccttcg atgatagcga taattttact catcatcttt cacatctggc
     4441 tctgtagaca gggtggtgat cacttctgga gtgaatccag attaaatatc tcattgctga
     4501 tgcttgatat tgagcatctt gcgcgcggta aggggctgcg ttgagataag agccagtcat
     4561 tacaaatacc aggatttagc ctcgcattag cggggctttt tattgccatt acaaaagcca
     4621 ctccctacag agtggctttg ataatggttt ataccctaca cgggataact taactgatat
     4681 cccttttaac ggataaaggt atttaagcct gacacatcat gcgctgtatc gtcgccgtat
     4741 tcccgtatta acagagaccg tagcccgacg gggaactcct tctgcgcgag tgtgcgggaa
     4801 taatcaaaaa cgatgcacac cgggttttta ccgcgtttat ggttcgcggg tttgtccctc
     4861 atgctcgcca gtcctgtgcg ggggtggaag aaacaggaca cttacacaga ttcttgtggg
     4921 cacgatgcta tgcctttctg gattatcccg atgccattca tgcaaggcgt tgtatcagac
     4981 gttcgtcaga gctgtcaggc tgatgggtcc tcccggtggg gtggcctgcc acggggcggg
     5041 agcgtcgcgg aaaaaggcta gtttttgaaa tttcattcgt catcaccact actgtaatgt
     5101 attgatatta cagtggtttt atttttgtgg tgtcgatttt gattgttttt tgttcatcac
     5161 taacaccgtt tgcctaaagt tgttcgcaag atgcatgttt aaaacattct ggagcgggta
     5221 tggatcgaga gttaaaaaat ctgacgctga atatcagtca actggcggca ctgtcaggtg
     5281 tacatcgcca gactgctgcg gcaaggctgc aaaatctacc cgttgcaggg gggcatgaaa
     5341 gcaacctcaa gctttatcgg gtggttgata ttgtgtcggc atttctggca ttaccaccgc
     5401 cggttgcaga aggcgaaatg gacgcgcatg agcgcaaagc ctggtatcag tctgaacgtg
     5461 agcgtcttaa gttcgaacag gaaacggcac aactcattcc ggccagtgat gtcagacggg
     5521 agtttgccat ctgggcaaaa gcggtcgtgc aggtgctgga gacattaccg gatattcttg
     5581 aacgtgactg cggtctgcag cctgccgctg tgagccgtgt tcagtccatt attgatgatc
     5641 tgcgcgatca gatagccctg cgggtgaccg aagcaggtgc ggatgatgag gaggaattac
     5701 agcgggagga gtaatgctga atcaggaaac cgcaaaggca gcacgaaccg attcaggtta
     5761 tatccttcgc gcaccgagac gaatgcgggt tgctgatgcc gttgctcagt atatgcgggt
     5821 gcccatgggg gcagggaact cagtcccgtg ggatccgctg gtggcaccgt atgttattga
     5881 gccgatgaac tgcctggcct cgcgtgaata cgacgcagtg atatttgttg gcccggcacg
     5941 aaccggcaag actatcggcc tgattgacgg ctgggtgatt tacaacgtga tttgcgatcc
     6001 tgctgatatg ctgatcatac agatgacgga ggaaaaagcc cgcgaacact ccaaaaaacg
     6061 actcgccaga acgtttcgcg tcagcccgga agtggtcagt cgcctgagtc cgaacaaaaa
     6121 tgacaacaac gtttatgaca gaacattcct tgctggtaac tacctgaaaa tcggctggcc
     6181 gtcagtcaat atcatgtcct catcagatta taaatgcgtc gcgctgacgg attatgaccg
     6241 ttttccggaa gatattgatg gcgaggggga tgctttctct cttgcctcaa aacgtaccac
     6301 aacatttatg tccagtggta tgacgcttgt ggagagttcc cccggcaggg atgtgaagga
     6361 tgtgaaatgg cgacggactt caccgcatga ggctccacca accacgggga tactgtcgct
     6421 ctataaccgt ggcgatcgcc gtcgctggta ctggccttgt ccacactgtg gtgagtattt
     6481 tcagccctgc ggcgatgtgg ttgctggttt ccgtgatatt gccgatcccg tgctggcaag
     6541 tgaggcggct tatattcagt gtccttcctg ttcaggacgg attatgcctg aacaaaaacg
     6601 tgagctgaac ggacgtgggg tctggttgcg ggatggtgaa tccatcaatg cggatggcag
     6661 tcgttatggt gatccccgac gctcacgtat tgcgtcattc tggatggagg gtccggcagc
     6721 tgcttaccag acactctcgc aactcgttta caaactgctt actgcagaac aggaatacga
     6781 gacaaccgga agtgaagaaa cactcaagac ggttatcaat accgactggg gattacctta
     6841 tcttccccgc gccagcatgg agcaacgaaa aagtgaactg cttgagcagc gggcagagcc
     6901 agttccttcc cgcagtgtgc cggatggcgt taatttcctt gtggcgacag tggatgtgca
     6961 ggcgggacgt catcgccgtt ttgtggttca ggtaacgggc tatggcagcc gtggcgaacg
     7021 ctggattatt gatcgttaca acatcacgca gtcattgcgc ggtgacagcg acggggagag
     7081 ccagcgaatt gatccggcca gctatccgga agactgggat gtcctgctga cggatgtttt
     7141 tcataaaagc tggccgctgg cctccgatcc ttctcaacaa atgcgactga tggcaatggc
     7201 ggtggactcc ggcggtgaag acggggtcac tgataatgcc tataaattct ggcgtcgttg
     7261 ccgtcgtgat ggccttggta aacgtattta cctgtttaag ggcgacagca tccggcgcgc
     7321 aaaactgatc acccgtacat tccctgataa caccggacga acgggccgac gggcgcaggc
     7381 cgcaggtgat gtgccgctct ggcttcttca gacggatgca ctgaaagacc gggtgaataa
     7441 cgcgttatgg cgtgactcgc caggtcccgg ctatgtgcat ttccctgact ggctggggag
     7501 ttggttttac gacgaactga cgtatgaaga gcggagcagt gacgggaaat ggagtaagcc
     7561 aggtcgcggt gccaacgaag cttttgacct gatggtgtat gccgaggctc tggtcattct
     7621 gcatggatac gaaaagatcc gctggccgga tgcaccggag tgggcgagcc gggaaacctg
     7681 gctggagtgt gtcccggaca gtaccgaacc gtcacccaca ccggaaccgg tatccacgcc
     7741 tgttaaaaaa caaaaacgga agaaaacagt aactgacgat gttaacccct ggctgacttc
     7801 cggaggatgg ttatgaacca gaatgatatc gaagccatga ttcagcgtta tacggaagct
     7861 gaaatggcgg tgctggacgg aaaatccgtc acctttaatg gtcagcagat gaccatggaa
     7921 aacttatctg agatccggca ggggcggcag gagtgggagc gccgccttgc ggctctgatt
     7981 acacgacgac gggggcatcc cgggtaccgg ctggcgaggt tctgatggca attcttgatg
     8041 atgtgattgg cgttttttca ccaggatgga aagcggcaag gctgcgttcc cgtgcggtga
     8101 tccaggctta tgaggccgta aaaacgacgc ggacacacaa agcccggcgg gaaaaccgaa
     8161 ctgccgacca gttaagccag tacggggccg tgtcgttacg tgagcaggcc cgttaccttg
     8221 ataacaacca cgatctggtc attggtgtat ttgacaagct ggaagaacgg gtggtgggga
     8281 aaaacgggat tattgtcgag ccacatccgg tattacgcaa tggggccatt gcccgtgacc
     8341 tggctgcgga gattcgcacc cgatggagtg aatggtctgt cagcccggaa gtcaccgggc
     8401 agtttacccg tccgatgctg gaacgtctga tgctgcgtac ctggctgcgc gatggtgagg
     8461 tgtttgccca gatggtttcc gggcgcataa acagcctgac gccttctgcc ggtgttcatt
     8521 tctggctgga ggcactcgag ccggacttta ttcccatgac cagtgatgag agcaacaggc
     8581 tgaatcaggg cgtgtttgtt gatgactggg ggcgtcccga aaaatatctg gtgtataaaa
     8641 gtcgtcccgt atccggacgg cagatggaaa ccaaagaagt ggatgcagag cgaatgctgc
     8701 atcttaaatt tgttcgccgt ctgcaccaga tgcgcgggac gtctttgttg tccggtgtgc
     8761 tgatccgcct cagtgccctg aaagagtatg aagattctga gctgactgca gcaaggatcg
     8821 ccgctgctct ggggatgtac atccgcaaag gcgacgggca gagctatgaa ccggatggta
     8881 atggcagcaa ggataaggaa cgcgagctta ccattcagcc tggcattatt tacgacgatc
     8941 tgaaacccgg cgaagaaatc ggaatggtga agtcggatcg tcccaatcct aaccttgaaa
     9001 cttttcgtaa tggtcagttg cgtgccgtgg cggcgggcag tcgtctgagt ttttccagta
     9061 cggcacgcaa ctataacggc acttacagcg cccagcgtca ggagctggtt gaatccactg
     9121 atggctacct gatcctgcag gactggttta ttggtgccgt cacccgcccg atgtatcgtg
     9181 cctggctgaa acaggctgtg gcatccggtg ttatcaggct accccgcgat cttgaccgtt
     9241 cttcactgta taccgcggtg tattccggac cggtgatgcc gtggattgac cctgttaagg
     9301 aggctgaggc ctggaaaatt cagattcgtg gtggagcggc gacagaatca gactgggtac
     9361 gtgcaggtgg tcgtaatccg gatgatgtca aacgtcggcg caaggccgaa attgatgaaa
     9421 accgcaagct ggatctggta tttgataccg atccggccag tgataaagga ggcagcagtg
     9481 ccgcaacgaa acgacagtag ccgcagcaca ccgacgacca gtccgaagaa taattcctgg
     9541 ttcaggatgc aggctggtca ccagagtgac gcggatattt atatttatga cgagattggt
     9601 ttctggggtg ttacagcgaa gcagtttatc agtgatctga atgcactggg cgatatcacc
     9661 cacattaatc tccatatcaa ttcaccgggt ggcgatgtct ttgaaggcat cgccattttt
     9721 aatgcactga aaacacatgg tgcgtccatt accgtttatg tcgacggtgt ggcggcgtca
     9781 atggcgtcgg tcattgcgat ggtgggaaac ccggtcatta tgccggaaaa caccttcatg
     9841 atgattcata aaccatttgg ctttacgggc ggtgatgcgg aggacatgcg cacctatgcc
     9901 gacctgctcg ataaggttga ggcggttctg ttacccgctt atgcacagaa aaccgggaaa
     9961 accaccgatg aaattgctgc catgctggcg gatgagacct ggatgtccgg tgccgaatgt
    10021 ctggcacatg gatttgctga tcaggtgacg ccagccgtta aggcaatggc atgtattcag
    10081 tcaaaacgta cagaggaatt taaaaagatg ccggaatcca ttcgaaacat gattactccg
    10141 ccacgcaaca gtgctccacg cgtacaggat gatgaacctg ccgcctcccg gacgccagtg
    10201 caggcagcag cacccgtggt ggatgaaaac agtatccgtg cgcaggtact ggcagagcaa
    10261 aaagcgcgtg taaacggtat taatgatctg tttgccatgt ttggcgggcg ttatcagacg
    10321 ctgcaggctc agtgtcttgc cgatcctgaa tgttcgctgg agcaggcccg cgaaaagctg
    10381 ttgaacgaga tggggcgcga gtccacgcca tccaataaaa atacaccggc tcatatttat
    10441 gccggtaacg gtaattttgt gggggacggg atccgccagg cgctgatggc gcgtgccgga
    10501 tttgaaaaaa ccgaacgtga taatgtctac aacgggatga ccctgcgtga atatgcccgt
    10561 atgtcactga ctgaacgggg tattggggtt tccagttata acccgatgca gatggtcggt
    10621 gcggcgttca cacacagtac gtctgacttc ggtaatattc tgctggatgt tgcgaacaaa
    10681 gccattctgc agggctggga agatgcccct gaaacctatg aacagtggac gcggaaaggt
    10741 cagttgtctg attttaaaat tgcccatcgt gtgggtatgg ggggcttcag tgctctgcgt
    10801 caggtgcgtg aaggggcgga atataaatac gtcaccaccg gagataaaca ggccactatt
    10861 gcactggcga cctatggcga gctgttcagt atcacccgtc aggccattat caatgatgat
    10921 ctgaatatgc tgaccgatgt cccgatgaaa ctgggccgtg cggcgaaatc cactattgcc
    10981 gatctggttt atgccattct gacgtctaac ccgaaaatct ccacagataa tgtaagtctg
    11041 ttcgataaag cgaaacatgc aaacgtactg gagagcgctg caatggacgt ggcatcgctg
    11101 gataaagccc gccagttgat gcgcgttcag aaagaggggg agcgtcatct gaatattcgt
    11161 cctgcgttcg tactggtacc gacggcgatg gagtctgttg ctaaccaggt cattcgctcc
    11221 tcaagtgtca agggggctga cattaacgcc ggtattatta acccggtgaa agattttgcg
    11281 accgttattg cagagcctcg tcttgatgat aacagccaga ccaccttcta cctggctgcg
    11341 tcaaaaggct ccgatacgat tgaagtggct tatctcaacg gtgtggatac gccatatatt
    11401 gatcagatgg agggcttcag tgtggatggc gtgacaacga aagtgcgtat tgacgccggt
    11461 gtcgcgccag ttgatcaccg cggtctggtg aaatgtacgg cgtaaacgtc gcagacaaca
    11521 actctgatgg cccgtaaggg ctttttttgt acctgaaatc agcccctgaa cggggcagtg
    11581 cggagacagt tatggcaaag aattttgtag aagaaggaaa aacggtggcg attgttgcca
    11641 gtgcagccat cagcagcgga gatctggtgc aggtgggtga tgtttttgcg gtggcgctga
    11701 ccgatattcc acagggtgaa acaggcgacg gcatgaccga aggtgtgttt atgctgccta
    11761 agctgaaaac ggatgatatg aaaacgggta agaaggttta tctgaagtcc ggaaaagttc
    11821 agctgactaa cagcggctct gatccgctgg tcggggttgt ctgggcagat gccggaacca
    11881 gtgcagaaga agtgccggta aaactcaatg tctgatccct tttcccggct ggcagcgcgt
    11941 atggatgcga tcacggtcag aaagatggga aagacagcct cgattaatga tgtcgatatg
    12001 actgtgatcc cgggagaaac actggcagag ctgaatgctc tgtccggacc tgcggtctct
    12061 ctggtggtgt tttcttcggg ataccgccca cggcgcgggg atcgcgttgt ttatgacgga
    12121 caacaatgga cggtcacacg gcatgaacgc tttaacggta agccaatgat ctttattgag
    12181 taaagaggtg tgggatgaag gggcttgaga atgccatccg caatctgaac agccttgata
    12241 cccgtatggt gccacaggcc agcgcatggg cgataaaccg tgtggcacag aaagcggtct
    12301 cggttgccac ccggcaggtt gccgggaata ccgttgcggg agataaccag gtgaaaggga
    12361 tccccctgaa actggtacgt cagcgtgtcc gggtgtttaa agccagtccg tcaggaaaaa
    12421 tgacggccag gatccgcgtt aaccggggca atctgcctgc cattaagctg gggaccgccc
    12481 gggtcagact gacccggcgt ggtggaaaac tgcagtaccg tggcagcgtg ctgaaggtgg
    12541 gtaaatatct tttccgggat gcgtttattc agcaactggc gaatggtcgc tggcatgtga
    12601 tgcggcgtat tgatggcaaa aatcgttacc ccattgatgt ggtgaaaatc cctctgtccg
    12661 gaccgctgac acaggcattt gaagatgccc gcgaccgcat cattgctgcg gaaatgccga
    12721 aacagctggg gtatgcactg aaacaacaac tgaggttatg gctgacccga tgaaccgaca
    12781 tacacaaatc cgccaggtcg tactggcacg ccttcgggaa cagtgtggag acagcgccac
    12841 gttttttgac gggcttccgg catttgttga tgcgcaggaa ctgcctgccg tggcggtgtg
    12901 gctgagtgat gctctgtaca ccggaaaaat gacggatgaa gatgactggc aggctgttct
    12961 gcatattgct gtcttcatcc gggcacaggc accggattca gagctggata tgtggatgga
    13021 gagcaccatt ttcccggccc tgaatgatgt accggcactt tccggactca tcgacaccct
    13081 gatcccactc ggttttaact atcaacgtga taatgagatg gccacctggg cgatggcgga
    13141 aatcacgtac cagatcacgt acacgaatta aggaggtggc aatgaccaca ccaaatccac
    13201 tggcaaaaac gaaaggtgcg ggaacgacgt tctggatgta caccggcaag ggcgatgcgt
    13261 ttgcgaaccc tttatcggac actgactggc tgcgtcttgc gatggtgaag gatctgcagc
    13321 ctggcgaaat gaccgctgat gcagaagatg acacttatct cgatgatgaa gatgcagact
    13381 ggaaaacgac aacccagggg cagaaatccg tcggtgatac ttcggcgacg ctggcctggc
    13441 gtccgggtga cagcgggcag aaaaaactgg ttcagttgtt cgactccggt gaagtctgcg
    13501 cgtttcgtat caaatatccc aacggtactg ttgatgtttt ccgtggctgg ctgagttcac
    13561 tgggtaaaac cattgcctca aaagacgtga tgacccgcac agtgaaaatc agcggtgtgg
    13621 ggcgtccgta tctggcagaa gaaggcactg aaacagtgag cgttaccggg ctgacggtgg
    13681 caccggcatc tgccagtgta aaagtgggag caaccaccac gctgaccttt acagtaaaac
    13741 ctgacggagc cagtgacaaa gcgatcagtg tgcattcgac agatccacag actgccacgg
    13801 tgaccctgaa cgggcttgtg gccacggtga aaggcgtgaa gcagggcagt gtcagcattg
    13861 tgggcatgac cgctgacggg aattttgtgg ctgtggctgc ggtgactgtc agcgcagcag
    13921 gttaacagga cgatactcat catttgcccc ggttattcgg ggctttttta caggtggaga
    13981 acatgatgtt tctgaaacag gacacgttta attatgaaaa acagtccgtg gtgctcagtg
    14041 agctgtccgg gctgcagaga attgaatatc tgacgtttgt tcagcagcga acggcaaagt
    14101 ttgatgccgg ggagggagaa ctgccggagg ctgaacgaca gattgctttt ctgcggatgg
    14161 ggatggatat caatgcctgg ctggtttccc gctcactgtg gaatgcggaa cagtctcagg
    14221 atgttgagac gctttacgca tccgttatta caacatggtc gtatgatgcc ctgggtgcgg
    14281 gggcggagat ggttctgtcg ctgagcggta tgggggccat tgataatgcc ggggatttgg
    14341 agcatgaggt gctgacgccg gaaaagtcct gacgcgggaa atgcagtttg tcatgcggct
    14401 tgcccgggag ttccggcggg cagactggcg gcggatgctg tcggaaatgt cggccactga
    14461 gcttggtgag tggggcgatt atttccggat gcagagcttc agtgatgtgt ggatggatgc
    14521 gcagtttgcc tcgctgaagg cattgatcgt gagaatggtg tccggcagca gtgatgctgc
    14581 ggtggctgat ttcagccttt taccggaaga gaacgggata ccggagcgaa cggacgaaga
    14641 actgatgcat cttggggaag gtatttccgg aggtgtgcgt tatggaccag atagccaacc
    14701 tggtcattga tttggggatt gatgcggcag agtttaaaaa tgaaattccc cgtatcaaaa
    14761 accttctgaa tggtgcagcc agcgatgcag aacggtcttc tgcccgtatg cagcgtttta
    14821 tggagcgtca gactcaggcc gcccggcaga caacgcaggc ggcttcttcg gctgcaacag
    14881 ccgcatccgt ccatgcgcag acggtggaga aaaacgcaca ggctcatgaa cgcatggccc
    14941 gcgaggtgga gaaaacccgc cagcgcatgg aggcactgag ccagaaaatg cgcgaggaac
    15001 aggcgcaggc catggctctg gcggaggctc aggataaagc ggctgctgcg ttttatcgtc
    15061 agattgacag tgtaaaacag gccagtgcgg ggctgcagga attacagcgt attcagcagc
    15121 agatccgaca ggccagaaac agtggcggga ttggtcagca ggattatctg gcgctgattt
    15181 ctgaggttac ggcgaaaacc cgtgttctta cacaggctga ggaagaggct acccgacaga
    15241 aagtggcgtt tatccgtcag cttaaagagc aggcaacccg ccagaatctt tcttcttctg
    15301 agttgcttcg tgctaaggct gcccagctgg gggtaagcag tgctgcagaa gtgtatatcc
    15361 gcaaaatgga gcaggcagga aaagcaacgc attcgctggg tctgaaaagt gcagcggccc
    15421 gtcaggagat aggcgttctg ataggtgaac tggcccgcgg caatttaggt gcgctgaggg
    15481 gatccggaat aacgctggct aaccgtgccg ggtggataga cacattgatg tcaccgaaag
    15541 gcatgatgct tggcggggtt attggcggta ttgccgcggc tgtctatggt ctgggtaaag
    15601 cctggtatga cggtcagaag gagggggaag aatttaaccg ccagctgtcg ctgacggggc
    15661 attatgccgg agtcactgcc gggcagctgt ggacgctcag tcgtgctatt tccgggaatg
    15721 gtatcacgca acatgctgca gccggtgcgc tggctcaggt ggtggggagt ggtgcatttc
    15781 gtggaaacga tatcggtatg gtggcgagag ctgccgcaca gatggagcga tcggttggcc
    15841 agtcggtcag cgataccata aatcagttta agcggctgaa ggatgatcct gtaaatgccg
    15901 cgaaggctct ggacaatgag ctgcattttc ttactgccac tcagcttgag cagatacgcg
    15961 tccttgggga acaggggcgg tccagtgatg cggcacggat agccatgtct gcactggcag
    16021 aggaaaccgg tcggcgtact gcggatattg ataataacct caatgcgctg ggcagtacgc
    16081 tgaagtatct gtctgattta tggagtcgtt tctgggatgc ggccatgaat attggtcgtg
    16141 aagactcgct ggatgaacag atttccgctt tacaggagaa agtgtcgcgg gcgaaaagac
    16201 tcccctggac ggcatcatct tctcaggttg agtacgatca gcagcgtctt aacgagcttc
    16261 aggagaaaaa acgccagaag gatttgcagg atgcaaaaga gcaggcagag cggaattatc
    16321 aggagcaaca gaaacgccgt aatgctgaaa atgctgcact gaaccggatg aatgaaacgg
    16381 aagcagcacg acatcagcgt gaaattgcgc gtattaatgc catgcagtac gccgatcagg
    16441 ctgtcaggga tgcggcgata caacgtgaaa atgaacgtta cgagaaagcc ctggcatccg
    16501 gtaagaaaaa aacacgcgaa acccgtaatg atgaggccac ccggttattg ctgcagtaca
    16561 gtcagcaaca ggcacaggtg gaaggacaga ttgctgctgc aagacagtca gcaggcattg
    16621 ccactgacag gatgacagaa gcgcataaac agcttctggc tctgcagcag cgcatcagcg
    16681 atctggacgg gaaaaaactg acggcagatg aaaagagtgt gctggcccgt aaagatgaac
    16741 tgattcaggc actgacgctg ctggatgtaa aacagcagga gcttcagaaa cagacggcac
    16801 tcaacgatct gaagaaaaaa acaattcagc tgaccagtca actggctgaa gaagagcgcg
    16861 ctcagcgcca gcaacatgac ctggatatcg ccacggtggg tatgggtgat cagcagcggc
    16921 agcgatatca ggtacaactg agtcttcgcc agaaatacca gcaacagctg gagcagttga
    16981 ggcgggatag tgagcagaaa ggaacatata acacggatga ctacagaaag gccgagcagg
    17041 cgctgacgga gagcctgaac cgacaactga atgagaatcg ccgttattgg caacagcttg
    17101 aaattgctca gggtgactgg aaaaacggag tcctgcgtgc actccagaat gtcactgaga
    17161 aagcggataa cacagccggg acagtggaac agttgttcac gtctgcgttc agtagcatga
    17221 gtgactggct ggcgacattc tgtactacag gcaaactcaa tttcaaatcc ttcacctctt
    17281 ctgtgctgtc agatatgtcc agaatcatgg ctcagatagc tttaatgaaa gcggtaaaag
    17341 gtattgcttc cgcgctgcct tttgattttg tagccaatgc tgatggcggt gtttatcagt
    17401 cggctgattt gagtcgctac agtggcacgg tggttaaccg tccgacgttt tttgcttttg
    17461 caaaaggcgc gggtgtgatg ggggaagctg gacctgaagc cattctgcca ctgcgtcgtg
    17521 gtgctgacgg taagctgggg gttgtggcgg atattggtgg ttcaggtatg gcgatgtttg
    17581 ccccgcagta caacatcgag atcaataacg atggcacgaa cgggcagata ggtccggctg
    17641 ccctgaaggt ggtttatgac cttgggaaaa aagcggcagc ggactttatg caacagcagg
    17701 cccgtgatgg tggtcgatta agtggagcat atcggtaatg gagacgtttc actggaaagt
    17761 gcgcccggat atgaatgtgg tatcagagcc gaaagtggtg acagtgaagc tgggcgatgg
    17821 ttatgaacag cgtcgtgcgg cgggactgaa taaccagttg tcgacttaca gcgtgacgat
    17881 acgtgttcgt aaatgtgaac acccatcttt gaaagccttt ctggaacggc acggtggcgt
    17941 ccgcgcattt cagtggacgc caccttatga ctggaagccg atcagggtgg tttgtcgtaa
    18001 atggtcggca agcgtggggg cgctgtgggt aaccataacg gcagattttg aacaggtcgt
    18061 ggcataggag gccctgatgc aggatatttc acaggaaaca catcatgaga cgacacgcct
    18121 tactcagtca gcccaggtgg tgctctggga aatcgatctg acagaggtcg gtggtgaacg
    18181 ttattttttc tgtaatgagc agaacgaaaa aggtgagccg gtcacctggc aggggcggca
    18241 gtatcaggca taccccattc aggggacggg atttgaactg aacggtaagg gcagtgctgc
    18301 ccgtccgaca ctgacggtct ctaacctgca cggcatggtc accgggatgg cggaagacat
    18361 gcagagtctg gtcggcggaa cggtggtcag gcgtaaggtt tacgcccgtt ttctggatgc
    18421 ggtgaacttc gtcaacggaa acagcgacgc cgatccggag caggaggtga tcagccgctg
    18481 gcgcatcgag cagtgcagcg aactgagtgc ggtcagtgcc tcctttgtgc tctccacacc
    18541 gacggaaacg gacggtgccg tttttccggg acgtatcatg ctggccaaca cctgcacctg
    18601 gacctatcgc ggtgatgagt gcggttatca cggtccggcg gtcgcggatg aatatgacca
    18661 gccaacgtcc gatatcacga aggataaatg tagcaaatgc ctgagcggtt gtaagttccg
    18721 caataacgtc ggcaactttg gcggcttcct ttccattaac aaactttcgc agtaaatccc
    18781 atgacacaga cagaatcagc gattctggcg cacgcccggc gatgtgcgcc agcggagtcg
    18841 tgcggcttcg tggtaagcac gccggagggg gaaagatatt tcccctgcgt gaatatctcc
    18901 ggtgagccgg aggcgtattt ccgtatgtcg ccggaagact ggctgcaggc agaaatgcag
    18961 ggtgagattg tggcgctggt ccacagccac cccggtggtc tgccctggct gagtgaggcc
    19021 gaccggcggc tgcaggtgca gagtgatttg ccttggtggc tggtctgccg gggtgagatt
    19081 cataaattcc gcagtgtgcc gcatctcacc gggcggcgct ttgagcacgg ggtgacggac
    19141 tgttacacgc tgttccggga tgcttatcat ctggcgggga ttgagatgcc gaattttcat
    19201 cgcggggatg actggtggcg tcacggccag aatctctatc tggataatct ggaggccaca
    19261 gggctgtatc aggtgccgtt gtcatcagca caaccgggcg atgtgctgct gtgctgtttt
    19321 ggttcatcgg tgccgaatca tgccgccatt tactgtggcg acggtgagct gttgcaccat
    19381 attcctgaac aactgagcaa acgagagagg tataccgaca aatggcagcg acgcacacac
    19441 tccctctggc gtcaccgggc atggcacgca tctgccttta cggggattta caacgatttg
    19501 gccgccgcat cgaccttcgt gtaaaaacgg gggctgaagc catccgggcg ttgtccacac
    19561 agctcccggc gtttcgtcag aaactgaatg acggctggta tcaggtgcgc attgccgggc
    19621 gtgatgcagg tgaaaccgaa ttgtctgccc gtcttaatga gccgctggca aatggtgccg
    19681 tgatccacat cgtgccgcgt ctggcgggag ctaaaagtgg cggtgtgttt caggtggtgc
    19741 tgggggcggc gctgattgcg gtggcatggt ggaaccctgt gggctggctg ggtgccgcgg
    19801 ctgtatcggg catgtatgcg gcaggggcca gtatgatcct gggcggagtg gcgcagatgc
    19861 tggcaccgaa agccaggacg cccacggcag caagtacaga taacggcaaa cagaacacct
    19921 atttctcctc actggataac atggttgccc agggcaatgt tctgccggtt ctgtacggtg
    19981 aaatgcgtgt ggggtcgcgg gtggtctctc aggagatcag cacggcagac gaaggggatg
    20041 gtggtcaggt tgtggtgatt ggtcgctgat gaaaaacgtt tatgtgaaac cgcctccggg
    20101 cggttttgtc gtttatggag cgtgaggaat gggtaaaggc agcagtaagg ggcatactcc
    20161 gcgcgaagcg aaggacaacc tgaagtccac gcagttgctg agtgtgatcg atgccatcag
    20221 cgaagggccg gttgaaggtc cggtggatgg attaaaaagc gtgctgctga acagtacgcc
    20281 agtgctggac agtgagggga ataccaatat ctccggtgtc acggtggtgt tccgggccgg
    20341 tgagcaggag cagacaccgc cggagggatt tgaatcctct ggctccgaga cggtgctggg
    20401 tacggaagtg aaatacgaca cgccgatcac ccggaccatc acgtcggcaa acattgaccg
    20461 actgcgtttt accttcggcg tgcaggcact ggtggaaacc acctcaaagg gggacaggaa
    20521 tccgtcggaa gtccgcctgc tggttcagat ccagcgtaat ggtggctggg tgacggaaaa
    20581 agacatcacc attaagggca aaaccacctc gcagtatctg gcctcggtgg tggtgggtaa
    20641 cctgccgccg cgcccgttca atatacggat gcgcaggatg acgccggaca gcaccacaga
    20701 ccagctgcag aacaaaacgc tctggtcgtc atacaccgaa atcatcgatg tgaaacagtg
    20761 ctacccgaac acggcactgg tcggcgtgca ggtggattcg gagcagttcg gcagccagca
    20821 ggtgagccgt aattatcatc tgcgcgggcg cattctgcag gtgccgtcga actataaccc
    20881 gcagacgcgg caatacagcg gtatctggga cggaacgttt aaaccggcat acagcaacaa
    20941 catggcctgg tgtctgtggg atatgctgac ccatccgcgc tacggcatgg ggaaacgtct
    21001 tggtgcggcg gatgtggaca aatgggcgct gtatgtcatc ggccagcatt gcgatcagtc
    21061 ggtgccggac ggttttggcg gcacggagcc gcgcatcacc tgtaatgcgt acctgaccac
    21121 acagcgcaag gcgtgggatg tgctcagtga tttctgctct gcgatgcgct gtatgccggt
    21181 atggaacggg cagacgctga cgttcgtgca ggaccgaccg tcggataagg tgtggaccta
    21241 taaccgcagt aatgtggtga tgccggatga tggtgcgccg ttccgctaca gcttcagcgc
    21301 cctgaaggac cgccataatg ccgttgaggt gaactggatt gacccgaata acggctggga
    21361 gacggcgaca gagcttgtgg aggacacgca ggccattctc cgttacggtc gtaacgtcac
    21421 gaagatggat gcttttggct gtaccagccg ggggcaggca caccgcgccg ggctgtggct
    21481 gattaaaaca gaactgctgg aaacgcagac cgtggacttc agcgtgggtg ccgaagggct
    21541 tcgccatgta ccgggcgatg tcattgaaat ctgcgatgat gactatgccg gtatcagcac
    21601 cggcgggcgc gtgctggcgg tgaacagcca gacccggacg ctgacgctcg accgtgaaat
    21661 cacgctgcca tcctccggta ccacgctgat aagcctggtt gacggaagtg gcaatccggt
    21721 cagcgtggag gtccagtccg tcaccgacgg cgtgaaggta aaagtgagcc gtgttcctga
    21781 cggcgttgcc ggatacagcg tatgggggct gaagttgccg acgttgcgcc agcgcctgtt
    21841 ccgctgtgtg agtatccgtg agaacgatga cggcacgtat gccatcactg ccgtgcagca
    21901 tgtaccggaa aaagaagcca tcgtggataa cggggcgcac tttgacggcg accagagcgg
    21961 cacggtgaat ggtgtcacgc cgccagcggt gcagcacctg actgccgaag tcaccgcaga
    22021 cagcggggag tatcaggtac tggcccgctg ggacacgccg aaggtggtga agggcgtgag
    22081 tttcctgctt cgcctgaccg tggcagcgga tgacggcagt gagcggctgg tcagcacggc
    22141 ccggacgacg gaaaccacat accgcttcag gcaactggcg ctggggcgtt acacgctgac
    22201 ggtccgggcg gtaaatgcgt ggggacagca gggcgatccg gcatcggtat cgttccggat
    22261 tgccgcaccg gcagcgccgt cgcggattga gctgacgccg ggctattttc agataaccgc
    22321 cacgccgcat cttgccgttt atgacccgac ggtacagttt gagttctggt tctcggaaaa
    22381 gcggattacc gatatcaggc aggtagaaac cacagcccgc tatcttggca cggcgctgta
    22441 ctggatagcc gccagtatca atatcaaacc gggccatgat tattactttt atatccgcag
    22501 tgtgaacacc gttggcaaat cggcattcgt ggagtccgtc ggtcgggcga gcgatgatgc
    22561 ggaaggttac ctggattttt tcaaaggcaa gataaccgaa tcccatctcg gtaaagagct
    22621 gctggaaaaa gtcgatctga cggaggataa cgccagcaga ctggatgagt tttcgaaaga
    22681 gtggaaggat gccaacgata aatggaatgc catgtgggct gtcaaaattg agcagaccaa
    22741 agacggcaaa cattatgtcg cgggtattgg cctcagtatg gaggacacgg aggaaggcaa
    22801 actgagccag tttctggttg ccgctaaccg tatcgcgttt attgacccgg caaacgggaa
    22861 tgaaacgccg atgtttgtgg cgcagggcaa tcagatattc atgaacgacg tgttcctgaa
    22921 acgcctgacg gcccccacca ttaccagcgg tggcagtcct ccggtatttt ccctgacatc
    22981 agacggaaag ctgaccgcta aaaatgcgga tatcagtggt agtgtgaatg cgaactccgg
    23041 gacgctcaac aacgtcacga ttaatgagaa ctgtcagatt aaggggaaac tgtcagccaa
    23101 tcagattgaa ggcgatattg tcaaaacggt cagcaagtct ttcccccgca cgaacagtta
    23161 tgccagtggc accatcacgg taagaatcag tgatgatcag aaatttgacc ggcaggtcat
    23221 gataccgcca gtgttattcc gcggtggtaa gcatgagaat ttcaacagta ataaccaaca
    23281 gtcatactgg tattcaacct gccggttaag agtgacccgc aatggtcagg agatttttaa
    23341 tcagtccacg acggatgctc agggcgtatt ttcctcagtt atagatatgc ctgccggaca
    23401 ggggacgctg acactgacat tcaccgtatc ttcatcagga gcgaataact ggacaccaac
    23461 aaccagtatc agcgatctgc tggttgtggt gatgaaaaaa tccacagcag gcatcagtat
    23521 cagctgaatt ttataaccca gaacgggcgt caggaatgac gcctttttta ttgcagaaaa
    23581 gcgagaggta attatgcgta aagtttgtgc agcaattttg tccgcagcca tttgtctggc
    23641 cgtatccggt gcgcctgcat gggcgtctga acatcagtcc acgctgagcg cggggtatct
    23701 tcatgcctcg acgaacgtcc ccggcagtga tgatctgaac gggattaacg tgaaataccg
    23761 ttatgagttt acggacacac tggggctggt gacgtcattc agctatgcag gagacaagaa
    23821 tcgccagctg acccgttaca gcgatacccg ctggcatgaa gattccgttc gtaaccgctg
    23881 gttcagcgta atggcggggc cgtctgtgcg cgtgaatgaa tggttcagcg cgtatgcgat
    23941 ggcgggtgtg gcttacagcc gtgtgtcgac tttctccggg gattatctcc gcgtaactga
    24001 caacaagggg aaaaagcacg atgtgctgac cggaagtgat gacggtcgcc acagcaacac
    24061 gtctctggcg tggggggctg gcgtgcagtt taacccgacc gaatccgtgg ccattgatat
    24121 tgcttatgaa ggctccggca gtggtgactg gcgcactgac ggtttcatcg tgggtgtcgg
    24181 ttataaattc tgattagcca ggtaacacag tgttatgaca gcccgccggt tcaggcgggc
    24241 ttttttgtgg ggtgaatatg gcagtaaaga tttcaggtgt actgaaagac ggcacaggaa
    24301 aaccggtaca gaactgcaca atccagctga aagcaaaacg taacagcacc acggtggtgg
    24361 tgaacacgct ggcctcagaa aatccggatg aagccgggcg ttacagcatg gacgttgagt
    24421 acgggcagta cagcgttatt ctgttggtgg agggattccc gccgtcacat gccgggacca
    24481 tcaccgtgta tgaagattcc cgacccggta cgctgaatga ttttctcggt gccatgacgg
    24541 aggatgatgc ccgtcctgag gcactgcgcc gttttgaact gatggtggaa gaggtggcgc
    24601 gtaacgcgtc cgcggtggca cagaacacgg cagccgcgaa gaagtcagcc agcgatgcca
    24661 gcacatcagc ccgtgaggcg gcaacccata cgactgatgc tgcaggctca gcacgcgcag
    24721 ccagcacgtc agccggacag gccgcgtcgt cggctcagtc agcatcttcc agcgcaggaa
    24781 cggcatcaac aaaggccagt gaagcatcga aaagtgctgc tgctgcagag tcctcaaaaa
    24841 gcgcggcagc taccagtgcc gctgcggcga aaacgtcaga aacgaatgcg gcagcgtcac
    24901 aacaatcagc agccacttct gcatccgccg cgaccacgaa ggcgtcagaa gcagccacct
    24961 cagcccggga tgcggcggcc tcaaaagagg cagcgaaatc atcagaaacg aacgcatcat
    25021 caagcgccag tagtgccgct tcctcggcaa cggcggcagg caattccgcg aaggcggcaa
    25081 agacgtctga gacaaacgcc aggtcttctg aaacggcagc gggacagagc gcctcggctg
    25141 cggcaggctc aaaaacagcg gctgcgtcgt ctgccagtgc cgcgtcaaca agtgccgggc
    25201 aggcctcagc cagtgccacc gccgccggaa aatcggcaga aagtgcc
//
LOCUS       DAJVUN010000047        25125 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.047, whole genome shotgun sequence.
ACCESSION   DAJVUN010000047 DAJVUN010000000
VERSION     DAJVUN010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25125
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.047"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..602)
                     /locus_tag="OQQ76_001601"
     CDS             complement(<1..602)
                     /locus_tag="OQQ76_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1968146.1"
                     /translation="MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLES
                     YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP
                     RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
                     EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS"
     gene            1122..2021
                     /locus_tag="OQQ76_001602"
     CDS             1122..2021
                     /locus_tag="OQQ76_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417978.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1968147.1"
                     /translation="MDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQL
                     GTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNELDGLFQQNATSISGKLRIDIPPGI
                     AKNLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLGK
                     LTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGG
                     MLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
                     RELSRRVNLFMQWLAGVMKEHLD"
     gene            2070..3083
                     /gene="yhjD"
                     /locus_tag="OQQ76_001603"
     CDS             2070..3083
                     /gene="yhjD"
                     /locus_tag="OQQ76_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HCS1968148.1"
                     /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK
                     VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML
                     LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI
                     RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH
                     LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI
                     KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK
                     TQP"
     gene            3494..4816
                     /locus_tag="OQQ76_001604"
     CDS             3494..4816
                     /locus_tag="OQQ76_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HCS1968149.1"
                     /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA
                     AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL
                     TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA
                     LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS
                     LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST
                     AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALF
                     AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI
                     LGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL"
     gene            complement(5050..7110)
                     /locus_tag="OQQ76_001605"
     CDS             complement(5050..7110)
                     /locus_tag="OQQ76_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1968150.1"
                     /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA
                     ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV
                     EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS
                     FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFG
                     LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG
                     VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD
                     SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS
                     VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP
                     LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE
                     LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC
                     AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP
                     LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS
                     QMKK"
     gene            complement(7180..7947)
                     /gene="pdeH"
                     /locus_tag="OQQ76_001606"
     CDS             complement(7180..7947)
                     /gene="pdeH"
                     /locus_tag="OQQ76_001606"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417982.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase"
                     /protein_id="HCS1968151.1"
                     /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL
                     MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLA
                     SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLGDF
                     GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE
                     TPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL"
     gene            8179..9108
                     /gene="kdgK"
                     /locus_tag="OQQ76_001607"
     CDS             8179..9108
                     /gene="kdgK"
                     /locus_tag="OQQ76_001607"
                     /EC_number="2.7.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417983.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxygluconokinase"
                     /protein_id="HCS1968152.1"
                     /translation="MSKKIAVIGECMIELSEKGADVKRGFGGDTLNTSVYIARQVDPA
                     ALTVHYVTALGTDSFSQQMLDAWHGENVDISLTQRMENRLPGLYYIETDSTGERTFYY
                     WRNEAAAKFWLESEPSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRANG
                     GKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQPVEDVIARTH
                     NAGVKEVVVKRGADSCLVSIAGEGLVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT
                     GGSAENAAKRGHLTASTVIQYRGAIIPREAMPA"
     gene            complement(9204..10700)
                     /locus_tag="OQQ76_001608"
     CDS             complement(9204..10700)
                     /locus_tag="OQQ76_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS1968153.1"
                     /translation="MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW
                     QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ
                     QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL
                     QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM
                     TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS
                     IMWDTPWQPIREAAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRA
                     QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA
                     DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL
                     QPKGEPEFNMKALQAAWDQIMAPSTAAAATSVATDDVHPEVTDIPPAQ"
     gene            complement(10921..12207)
                     /gene="dctA"
                     /locus_tag="OQQ76_001609"
     CDS             complement(10921..12207)
                     /gene="dctA"
                     /locus_tag="OQQ76_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DctC"
                     /protein_id="HCS1968154.1"
                     /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL
                     IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG
                     AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF
                     GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQ
                     LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM
                     LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI
                     VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG
                     VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS"
     gene            complement(12390..14378)
                     /gene="hmsP"
                     /locus_tag="OQQ76_001610"
     CDS             complement(12390..14378)
                     /gene="hmsP"
                     /locus_tag="OQQ76_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator HmsP"
                     /protein_id="HCS1968155.1"
                     /translation="MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTAT
                     QLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIP
                     ERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLV
                     TIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIG
                     MLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIIT
                     CETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHA
                     ITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGK
                     NQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQ
                     QPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQL
                     MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF
                     GMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVE
                     TEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLEEK"
     gene            complement(14460..17933)
                     /gene="bcsC"
                     /locus_tag="OQQ76_001611"
     CDS             complement(14460..17933)
                     /gene="bcsC"
                     /locus_tag="OQQ76_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsC"
                     /protein_id="HCS1968156.1"
                     /translation="MRKFTLNIFTLSLGLSVMPMVEAAPTAQQQLLEQVRLGEATHRE
                     DLVQQSLYRLELIDPNNPDVVAARFRSLLRQGDIDGAQKQLDRLSQLAPSSNAYKSSR
                     TTMLLSTPDGRQALQQARLQATTGHAEEAVASYNKLFNGAPPEGDIAVEYWSTVAKIP
                     ARRGEAINQLKRINADAPGNTGLQNNLALLLFSSDRRDEGFAVLEQMAKSNAGREGAS
                     KIWYGQIKDMPVSDASVSALKKYLSIFSDGDSVAAAQSQLAEQQKQLADPAFRARAQG
                     LAAVDSGMAGKAIPELQQAVRANPKDSEALGALGQAYSQKGDRANAVANLEKALALDP
                     HSSNNDKWNSLLKVNRYWLAIQQGDAALKANNPDRAERLFQQARNVDNTDSYAVLGLG
                     DVAMARKDYPAAERYYQQTLRMDSGNTNAVRGLANIYRQQSPEKAEAFIASLSASQRR
                     SIDDIERSLQNDRLAQQAEALENQGKWAQAAALQRQRLALDPGSVWITYRLLQDLWQA
                     GQRSQADTLMRNLAQQKPNDPEQVYAYGLYLSGHDQDRAALAHINSLPRAQWNSNIQE
                     LVNRLQSDQVLETANRLRESGKEAEAEAMLRQQPPSTRIDLTLADWAQQRRDYTAARA
                     AYQNVLTLEPTNADAILGLTEVDIAAGDTAAARSQLAKLPATDNASLNTQRRVALAQA
                     QLGDTAAAQQTFNKLILQAKSQPPSMESAMVLRDGAKFEAQAGDPKQALETYKDAMVA
                     SGVTTTRPQDNDTFTRLTRNDEKDDWLKRGVRSDAAGLYRQQDLNVTLEHDYWGSSGT
                     GGYSDLKAHTTMLQVDAPYSDGRMFFRSDFVNMNVGSFSTNADGKWDDNWGTCTLQDC
                     SGNRSQSDSGASVAVGWRNDVWSWDIGTTPMGFNVVDVVGGISYSDDIGPLSYTVNAH
                     RRPISSSLLAFGGQKDSPSNTGKKWGGVRADGVGLSLSYDKGEANGVRASLSGDQLTG
                     KNVEDNWRVRWMTGYYYKVINQNNRRVTIGLNNMIWHYDKDLSGYSLGQGGYYSPQEY
                     LSFAIPVMWRERTENWSWELGASGSWSHSRTKTMLRYPLMNLIPTDWQEEAARQSNDG
                     GSSQGFGYTARALLERRVTSNWFVGTAIDIQQAKDYAPSHFLLYVRYSAAGWQGDMDL
                     PPQPLIPYADW"
     gene            complement(17915..19021)
                     /gene="bcsZ"
                     /locus_tag="OQQ76_001612"
     CDS             complement(17915..19021)
                     /gene="bcsZ"
                     /locus_tag="OQQ76_001612"
                     /EC_number="3.2.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase"
                     /protein_id="HCS1968157.1"
                     /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID
                     PSDARKITTSEGQSYGMFFALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKE
                     NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG
                     SMLLPGKVGFAEDNSWRFNPSYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFS
                     PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE
                     KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNY
                     VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH"
     gene            complement(19028..21358)
                     /gene="bcsB"
                     /locus_tag="OQQ76_001613"
     CDS             complement(19028..21358)
                     /gene="bcsB"
                     /locus_tag="OQQ76_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HCS1968158.1"
                     /translation="MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTE
                     QNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGM
                     RSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN
                     PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPV
                     PFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRN
                     AIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQ
                     GNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAI
                     NVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEAN
                     RLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQN
                     HVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMET
                     LLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQAT
                     ESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLA
                     DSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERVWYAL
                     ANHPILLAAISVILLAWVLWRLLRIISRRRLNPDNE"
     gene            complement(21369..23987)
                     /gene="bcsA"
                     /locus_tag="OQQ76_001614"
     CDS             complement(21369..23987)
                     /gene="bcsA"
                     /locus_tag="OQQ76_001614"
                     /EC_number="2.4.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417990.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-forming cellulose synthase catalytic
                     subunit"
                     /protein_id="HCS1968159.1"
                     /translation="MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILA
                     WIFIPLEHPRWQRIRAEHKNLYPHINASRPRPLDPVRYLIQTCWLLIGTSRKETPKPR
                     RRAFSGLQNIRGRYHQWMNELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSL
                     ILALICVTQPFNPLAQFIFLMLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRY
                     TSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVD
                     IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQNVGVKYIART
                     THEHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHI
                     FSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA
                     VETVTEDAHTSLRLHCRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLD
                     NPLTGKGLKFAQRLCYVNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFV
                     LSHMIHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGG
                     LVEEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYGPPTEMLTVVVSMVWVFYNLIVL
                     GGAVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQIL
                     EGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQQHIDFVQCTFARADTWAL
                     WQDSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRVLTSLVSWVVSFILRRP
                     ERSETAQPSDQALAQQ"
     gene            complement(23984..24736)
                     /gene="bcsQ"
                     /locus_tag="OQQ76_001615"
     CDS             complement(23984..24736)
                     /gene="bcsQ"
                     /locus_tag="OQQ76_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HCS1968160.1"
                     /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL
                     RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHWQTRL
                     SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQ
                     ALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPVGEY
                     RSDALAAEEILTLANWCLLNYSGLKTPVGSAS"
     gene            complement(24748..24936)
                     /locus_tag="OQQ76_001616"
     CDS             complement(24748..24936)
                     /locus_tag="OQQ76_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhjR family protein"
                     /protein_id="HCS1968161.1"
                     /translation="MNNNEPDTLPDPAIGYIFQNDIVALKQVFSLPDIDYADISQREQ
                     LAAALKRWPLLAEFAQQK"
BASE COUNT         5851 a         7019 c         6367 g         5888 t
ORIGIN      
        1 caggaggaga tatttaacat cattgccgcc tgggtgcgat ttttcacttc cagacggcga
       61 tacagggatt ccagatgcgc ttttaccgtt ccggtactga tattcagcgc tctgccgatc
      121 tccttatttg actcgcccgc cgctaacatg gttaaaatct cccgctggcg ggcgcttaac
      181 gatttgagat ctttaatgtc cttttccggc gtcgtccgcc agtctccagg cagaaacatc
      241 atccccatcg ccgcactatt taccgccaac gcaaatgtct cgacggttga atcacgaggc
      301 acaatggcca gcacattaaa atggataact tcctgtaacc accgtttatt gcaatccgtc
      361 gccgtgatta acaccttaac ctcaggaaac tgcaccacgg ttttttgcag caaccagtag
      421 caaaactcac catcctgatc gccatcgagc ataactaagg cttcagggta actttccagc
      481 ttttgccata actcgtctgc ctgactggcc ccctgaatac tcacccctgg aatacgctgc
      541 tgtaaactga ttttcattcc atgaataaat attgactgcc tgtcaaacat gactatttgc
      601 ataactgaat ctccacctga atatgttaaa aagacttaag tagtggaagg gtattacccg
      661 cgagaaaaaa taagaattcg ccatttggcg gtggccattc tacagagatg acgcgtagaa
      721 aatagttacc gatataaata gttacagcta aacgcctgaa attacatgtc gagggcacta
      781 tttaaaacaa ttttgaggat ttccttatat tggtggttag tacgcatgca attaaaaatg
      841 aaattccgcg actacaagcc aaaataacaa atggcaatga gacaaaaata agcacaaata
      901 gccaatacgt cctctattca ctttaaaggg aatcactgaa aaatacgctc tgtttaaggg
      961 gattcacctt tctcataaag ctattccgcc cttttcctgc tgagaaatcg ccacattcgt
     1021 catgacaaca ttgtgaaacc cggcattaga tgttagaaaa aacaataaac aatgcgatat
     1081 gcgcgttact gtttcgctgt gaacagcaat cggtcaaaga aatggataaa attcacgcaa
     1141 tgcagttgtt catcaaagtc gcggagctgg aaagtttttc ccgcgcagcg gatttctttg
     1201 ctttgccaaa gggaagtgtt tcgcgccaga tacaggcact ggaacatcaa cttggcaccc
     1261 agcttctcca gcgcaccacg cgacgggtca aactcacgcc agaaggcatg acctattatc
     1321 aacgggcaaa agatgtgttg agtaatctca acgaactgga cggtctgttt caacagaatg
     1381 ccaccagtat cagcggtaaa ttacgcatcg acatcccgcc aggaatcgcg aaaaacctgt
     1441 tactgccgcg cctgtcggaa tttctctatc tgcatccggg aattgagctg gaactgagta
     1501 gccatgaccg tccggtagat attcttcatg atggttttga ttgcgtgata cgcactggcg
     1561 cgttaccgga agatggcgtt atcgcccgtc ccctcggcaa actgaccatg gtcaactgtg
     1621 ccagtccgca ctatctgacg cgctttggtt atccgcaaag ccccgatgat ctgacttcac
     1681 acgcaatagt gcgttataca ccgcacctgg gtgtacatcc gttaggtttt gaggttgcca
     1741 gcgttaatgg cgtccagtgg tttaagtctg gcggcatgtt gacggtaaat agtagcgaaa
     1801 actatctcgc cgccggtctt gccggtctgg ggattattca gatcccgcgc attgccgtgc
     1861 gcgaagccct gcgtgccggg cggcttattg aagtattacc tggctaccgt gccgagccgc
     1921 tctccctttc gctggtttac ccgcagcgtc gggagctttc ccggcgtgta aacctgttta
     1981 tgcagtggct ggctggcgta atgaaagagc acctggactg accgactata ctttttaaga
     2041 atgaccacga cagaaggaca aaagagcgga tgacgcagga aaacgagatc aaacgtccca
     2101 cccaggatct ggagcacgag ccgattaagc agttggataa tagcgagaaa ggcggcaaag
     2161 ttagccaggc gctggaaacc gtcaccacca ctgccgaaaa agtccaacgc caaccggtta
     2221 ttgcgcacct gattcgcgcg acagaacgct ttaacgatcg gctgggtaac cagtttggtg
     2281 cggctatcac ctatttctca tttttgtcga tgatcccgat tttgatggtg tcgtttgccg
     2341 cagggggctt tgtgctggcc tcccatccga tgttgctaca ggatatcttc gacaaaattc
     2401 tgcaaaacat cagcgatccg acactagccg ccacgttgaa aaacaccatc aacaccgccg
     2461 ttcagcagcg tacgactgta gggcttgtcg gcctggcggt ggcactttat tccggcatca
     2521 actggatggg taacctgcgt gaagcgattc gtgcccagtc gcgcgatgtc tgggaacgct
     2581 cgccgcaaga tcaggagaag ttctgggtaa aatatctgcg tgattttatt tcactgattg
     2641 gtttgttgat tgcgctgatt gtgacgcttt cgatcacctc ggttgccggt tcggcgcagc
     2701 aaatgattat tagcgccctg cacctgaaca gcattgagtg gctgaaaccg acgtggcgat
     2761 tgattggcct ggcgatttcc atcttcgcca actatctgct tttcttctgg atcttctggc
     2821 ggttgccgcg ccaccgtccg cgcaaaaaag ccctgattcg cggaacattt ctggctgcta
     2881 ttggttttga agtgattaaa atcgtgatga cctacaccct gccatcgctg atgaaatccc
     2941 cctctggcgc agcatttggt tccgtgctgg ggctgatggc atttttctac ttcttcgccc
     3001 gtttgacgct gttttgcgcg gcgtggattg ccaccgccga atataaagac gacccgcgaa
     3061 tgccagggaa aacgcagcct taaaataggc cggatgcggc gtaaacgcct tatccggcat
     3121 acgattttat tcggcctggc tccccgtagg ccggataaga tgcgccagca tcacatccgg
     3181 ctataatgcg cacataacct cttgaaactc gtccccagag cctcttcagc catctattta
     3241 ggagcaaaca atttcattct aactcataac cccagcatat aaatccagtt ggtaactttt
     3301 atttaacctg aaaccagttt tatccactat ttataaagtt atgtgaagca tttcatagaa
     3361 gaaaaatcac tggcctaaac attatcccct ttttgcctgg tttttgacca ttcccgcgat
     3421 ttgttacaca ttgaaatatc acttttgctg tgcgtaatat ggctattcgt tagccaaaaa
     3481 ataagaaaag attatgcaag caacagccac aacactcgac cacgagcaag aatacacgcc
     3541 gatcaactcg cgtaataaag tccttgtcgc ctctctcatt ggcacagcca ttgagttctt
     3601 cgacttttac atttacgcca ctgcggccgt tattgtgttt ccgcatatct tcttcccgca
     3661 gggcgatcct acggcagcaa cgctacagtc gctcgccacc ttcgccatcg ccttcgtcgc
     3721 gcgccccatt ggctctgccg tttttggtca ttttggcgat cgcgttgggc gtaaagcgac
     3781 gctggtcgcc tcgttgctaa cgatggggat ttcgaccgtg gtgattggtc tgctgccagg
     3841 ctatgccacg attggtattt tcgccccgct gctgctggcg ctggctcgat ttggtcaggg
     3901 tctgggctta ggtggtgaat ggggcggcgc ggcgctgctg gcgactgaaa acgccccacc
     3961 gcgcaaacgt gcattgtacg gctccttccc gcagctgggc gcaccgattg gcttcttctt
     4021 tgccaacggc actttcttgc tgctttcctg gctactgacc gacgagcagt ttatgagctg
     4081 gggctggcgt gtgccattta tcttctcggc ggtgctggtc attatcggcc tgtatgttcg
     4141 cgtgtcgctg catgagtcgc cggtgtttga gaaagtcgct aaagcgaaaa aacaggtgaa
     4201 gatcccgctg ggtacgctgc tgaccaaaca tgttcgcgta accgtactgg gtacgttcat
     4261 tatgctggca acctatacgc tgttttacat catgacggtc tactctatga cctttagtac
     4321 cgccgccgcg ccagttgggc ttggcctgcc gcgtaacgaa gtgttgtgga tgttgatgat
     4381 ggcagttatt ggttttggcg tgatggtgcc agtcgctgga ttactggctg atgcctttgg
     4441 tcgccgtaaa agcatggtaa tcatcaccac gctgatcatc ctattcgcgc tattcgcctt
     4501 taaccctttg ctcggttctg gcaacccgat tctggttttt gccttcctgc tgctggggtt
     4561 aagtctgatg gggctgacct tcggtccgat gggcgcgctg ttaccagagc tgttcccgac
     4621 agaagtgcgt tacaccggag catcgttctc ttacaacgta tcgtcgattc tcggggcttc
     4681 cgttgcgccg tatatcgcag cctggttgca gactaactac gggttaggtg cggtggggtt
     4741 atatctggcg gcgatggctg gcttgacgtt aatcgccctg ctgctgaccc atgagacgcg
     4801 acatcagtcg ttgtaagtat cgtgtgggca gccaccctca ccccagccct ctccctgaaa
     4861 gggagaggga gaaaagcgga gcgagatgtt atatcgcgaa cataacagcc ctcccccaga
     4921 aagtgaacgg aaaagcggta ctcgttgttt caacacgcac aaaacagtcc cctcgcccct
     4981 ttggggagag gattagggtg aggggaacac gctgctcccg aactcaccag caaacacaat
     5041 ccaacctcat cacttcttca tctgcgacaa tatcgtccga cactgattag cctccccttc
     5101 ggaaggtgag atcagtgcca ataacgccgc cgccggtgtt accagcgttg ccagtgccgc
     5161 cgcaacggca ccacgggcaa tcagcggtcc ggctttcacc ccagcctgcg gatttttaaa
     5221 cgtcccacgc acatacagcg gcgaacgcag tgtgataatc cgaatccctt tactctccgg
     5281 atcaatagtc aaatccagct gttccgaagc aaaacttgcc gtgccggtaa cattaatcaa
     5341 cgcgttctca gtatcgaaag caaaaatctg cgggcgcgct acgccgttgg caatattcag
     5401 attcgccgcc gcgcagttca cccgcacctc atcgtcacca aatatcgcac cgacaatgta
     5461 gttgccgaca ttcagcccaa caatctccat caggttgcgg ctcaccagcc cgtcattcat
     5521 caacagtttc aggttgccgt tactgttgcc taaaagcgcc gccaccgagt taccgctacc
     5581 gcgtagttcc gcgtcaccgt tcatttcccc cagcgtcttc tgcatcagtt ccacatcggg
     5641 catcagttct ttcagtttca gtcgacgagc ctgaatatct gcccgcccct gcatcggctt
     5701 tttatcgcct tccagatgga tattcgccgc aatgctgccg cccgccatgc caaatttcag
     5761 cggttgcagg cgcaggtcag catttttgag gatgatatga gtagaaagat cgctaatcgg
     5821 caggctactg ccatgctcga tacgtcggcc tttgaagcga acatcggcat ccataacgtc
     5881 ccatttatcg gtttcgaagc ggtcataagg cagcactttg cccgcaggct gaacgctttt
     5941 ttcgcccttc ttctgttcag accgtttcga cttttctgcc cctttccccg aatcaacgcc
     6001 aatcaacggt cccaggtccg ccagccgcaa ttgccgcgac tcgacatcac cttccagttt
     6061 tggtcgtggc tttccggtgg tgtagaccag agaaccgtgg atatcgctat cgccaattcg
     6121 tccattaaaa ccgcgataat caaagaccga cgatttttca gtgtcgattt tcgctaccag
     6181 ccgaccatcc gtttcaaacg gcggggtatc gggcagcaga acgcccgtca gttcatagag
     6241 atcacccagt gaatcgccag aaaatttaag ccgtaaatcg acaccgccca tcttcattgg
     6301 gtcattcacg acgccatcaa aagcaacacg ggtattacct gaacggaaat cagcctgtac
     6361 cggaaacggc gtcccttcgc cacgcagcgc cagcataccg cctatttttc ccgtacccgt
     6421 gagcggttca ccgttataac gtccctgcgc cttcaggcca aaaacgtaat cgcccacctt
     6481 ttctttatcc gctttacctt tcgatccagt aacttcgctg aacggcagcg gcttgcctaa
     6541 cggatcaaca aaaatttcca gatccgcttt gcttactttg tcatcaatgg cgatccgccc
     6601 ttgatcgaaa agaatattat ccagccgaaa cgaccatgcc gacggctttg cattcgcgtc
     6661 tttgttatca tcgttggcga gattaaacgt ccagttattg ttcttttcgg agaggcgaat
     6721 caggcgcgcg tcgggctttt cgagcttgat ccacggcagc cagaccgttt tggtcagcag
     6781 cgccagcggt gccagcgttg cctctactcg cggcaaatgc accatcgtga cttcgggaat
     6841 atccggtgga ttgccaagaa tgatgtcttc tgcatgtaca tgaggccacg gcacccagct
     6901 gcgccagcca gtttcttgtt tttgccgctc ccacaccacg cccagatcgc cacggatagc
     6961 gaacggacga ttcaactccg cagagacttt ctggttgatg gtcggtttga gtcgattcca
     7021 gtcaaaagtt gcaatcaaaa tgatcgccac gacaatcaac aacaagaaag cccctgaaat
     7081 cgcagcggtt attttgcctg ccttgctcat cgttcgcttc ctcatattct tcctgtgcca
     7141 gtcctaaaga tagtccagcc aggcggaaaa tgaggcagct tatagcgcca gaaccgccgt
     7201 attcagcgtt tctatcggtg ccgggcgtga aagaaaccag ccttgtgcgg cgaatgcggg
     7261 cgagttctgt acatcacgcc actcttccgg cgtttctacg ccctcaacaa tcaccccgcg
     7321 acaatagcga ttcattagat gtaaaagctg agaaaagagt gtgcgtcctt ccggcgactg
     7381 acgcagcatc acaaacagtt ctcgcgcgat tttgatgtag tcataacgca cttcacttag
     7441 tgcagagaaa tttgccatcc cggtaccaaa atcacccagc cacagcgggc caaattcaca
     7501 catcgaggca aaggttgaat ctttcggcag acggatatgc tccaccagtt cgaaacgcag
     7561 ccagggaaga cgctcaattt ggcgcaggat ttttggttgc tgacgcaggg cgatgagcgt
     7621 agggccatca atattgaccg atgccagcag gccgtgctct ataaagaagt cggctttttg
     7681 cgccagcaaa tcaatctgct ctttcacaac ctccatccga tggctgacgg tgatttcagt
     7741 aaaatagcga tccggcggca ggcgttgcga agggttcaag ggatgcgtga ccaccgttaa
     7801 tagctccacg gccattaacc gcccgcatgt ttgatagatc ggctgccagg tgtaagcacg
     7861 ctcacactgc aaccaaaaac gccgttcctg caagctctcg atgcttgctt cagggttgct
     7921 tattcgctgg ataacctgcc ttatcatcaa agatgtcctg tgtttaaaag tgatgctgcc
     7981 cggactcgac aaagattatc ggcgcgtaag ggcagaactt taccgcctgg ccggggtaaa
     8041 tttcctcact ccacaacgga atctttcagg aatacgttct ggctcaaaaa aataatggaa
     8101 cactgtttta atattgttga ccagcaaacc accacagcgc aaactaacgc taatttttta
     8161 cagatcaggt tcacgactat gtccaaaaag attgccgtga ttggcgaatg catgattgag
     8221 ctttccgaga aaggcgcgga cgttaagcgc ggtttcggcg gcgataccct gaacacttcc
     8281 gtctatatcg cccgtcaggt cgatcctgcg gcattaaccg ttcattacgt aacggcgctg
     8341 ggaacggaca gttttagcca gcagatgctg gacgcctggc acggcgagaa cgttgatatt
     8401 tccctgaccc aacggatgga aaaccgtctg ccgggccttt actacattga aaccgacagc
     8461 accggcgagc gtacgttcta ctactggcgg aacgaagccg ccgccaaatt ctggctggag
     8521 agtgagccgt ctgcggcgat ttgcgaagag ctggcgaatt tcgattatct ctacctgagc
     8581 gggattagcc tggcgatctt aagcccgacc agccgcgaaa agctgctttc cctgctgcgc
     8641 gaatgccgcg ccaacggcgg aaaagtgatt ttcgacaata actatcgtcc gcgcctgtgg
     8701 gccagcaaag aagagacaca gcaggtgtac caacaaatgc tggaatgcac ggatatcgcc
     8761 ttcctgacgc tggacgatga agacgcgctg tggggtcaac agccggtgga agacgtcatt
     8821 gcgcgcaccc ataacgcggg cgtgaaagaa gtggtggtga aacgcggggc ggattcttgc
     8881 ctggtgtcca ttgctggcga agggttagtg gatgttccgg cggtgaaact gccgaaagaa
     8941 aaagtgatcg ataccaccgc agctggcgac tctttcagcg ccggttatct ggcggtacgt
     9001 ttgacgggcg gcagtgcgga aaacgcggcg aaacgcgggc acctgaccgc aagtaccgtt
     9061 attcagtatc gcggcgcgat tatcccgcgt gaggcgatgc cagcgtaaac gcagcatatg
     9121 caaaaggctg gataaagtgt tacccctcta tccagctcat ccataaatac ctgatggttg
     9181 tgctaactca tcaccatcag gcattactgt gcaggtggaa tatccgtcac ttcaggatgt
     9241 acgtcatccg tggcgacaga ggtggcggca gcagcagtcg atggggccat gatttgatcc
     9301 caggccgcct gcaacgcttt catgttaaat tccggctcgc ctttcggctg cagcagtatt
     9361 aacgccatat cattcgacaa ctgctgacgc agatcctgat ttaacatctc caccgtcagg
     9421 ctgttaagga aatcctgccg cagtttctga tactgctccg gcgcgatatc gacgacctga
     9481 ttttgcaacg aacgcatccg ctgacccatc agaatatcgg tatcagcccg cgcataggcg
     9541 gcaaacagtt tctgcagctc cagtttcttt tgcgccacta acgcattgaa ctcttcttcc
     9601 ggcagacctt tatcgcgaac cttcgccagt tcacgcgcca ccagattaag gttgctgttc
     9661 agcttgtcgt ttggtgattc gatgttgatg gcacactgcg cacgcagata cagcacacgg
     9721 cagtcaaatc caagaccgat gtctttgctg ttactggcgc ttaacgcttg ctgaacatgc
     9781 cagaacagcg cctcgcgggc caggtccgca cgccagtagc gcagcagtgc ggctgcttca
     9841 cgaatcggct gccacggcgt atcccacatg atagataacc ggtcctgacg caccgcgtca
     9901 gtcataatac tcaccgcttc cgcacgcagc ggagaaagcg tcggcaccgg agctggcgtt
     9961 tcacgtttgc ctttcagttc gccaaacgtt ttgttgattt ggtcgacaac cgagcgcgca
    10021 tccacgtttc ccaccaccag tagcgtcatt gcatccgggg tgtaccattt ctgatagaaa
    10081 tctttaattt tttccgcttc aacgggttgt ttcagcggat cggcaggatc gtgacctaac
    10141 aaggttgacc ctttcagacg atagcgccac cagccctctt tagtatcggc aggccaggtt
    10201 gccaccatgt cctgactttg cagcgcgtgg ttgatggttt ctggtgtgat ggtcaatttg
    10261 ccagtggcat ttgccagata agagagcgct tctttcagca aatcgttacg gttattgggc
    10321 aaactcagat taaacagcgt ggtgtcataa gagacaatta ccggcggcat cgggcgttta
    10381 gggtcgatcc cctgctgcca caatgaacgc gcctgtgctg cgtcaaggcc accgctttgc
    10441 gttagcgcaa tacgagggat ggcgtgactg taaccgctct gttgtgtact ttcggcgagc
    10501 gaaccggtat taaccagcag gcgaatttca acacgatcgc tgggacgctg gggggtggtc
    10561 agcacttgcc actgtaaacc gttggaaagc gtcccctgtt gccatgctgg atcaggctgg
    10621 agcgcatctg cctgcacata gccagcagtg gccatcatca gcaaaccgcc cgctaaaagt
    10681 cgaatttttg tgccctgcat gtgaacccct gatcaactat cctggtaata aaaaaactgc
    10741 ccgttgtcag tcagtctaaa tgacgttaaa aacacttcgt gttagaccgc aagaacatga
    10801 aaatgtcacg gaagaagtga aataaacctg aactcaccca ggtggtaagt tcaggcacag
    10861 gggtcaatta tgcgcaaaca cccgcactcg gggaagggag tgcgggcata agtggtgaga
    10921 ttaagaggat aattcgtgcg ttttgccatc cggcgcacga ttattcagca catcgtccag
    10981 ttttttgtgg tccagttctt tcacccactt agcaacgaca atggtcgcta cgccgttacc
    11041 gaccaggtta gtcagcgcac gagcttctga cataaagcgg tcgataccga ggatcagcgc
    11101 cagacccgct accggcaaat ggcccaccgc agagagcgtc gccgccagca cgataaagcc
    11161 actacccgtt acccctgccg cccctttaga agaaagcagc aacacgatta acagcgtgat
    11221 ttggtggacg atatccatct gactgttagt ggcctgggcg ataaacaccg ccgccattgt
    11281 caggtatatc gatgtgccat caaggttaaa cgagtagcct gtcgggatga ccagccccac
    11341 caccgatttg cggcagccga gtttctccat cttgtcgagc atacgcggca gcgccgactc
    11401 ggaagatgaa gtccccagta caatcagcag ttcttcacgg atgtagcgga taaatttgaa
    11461 gatactgaaa ccagtcgctt tagcgattga acccaatacc agcaccacaa acaggataca
    11521 ggtaatatag aaacagataa tcagctgccc cagttgcacc agtgtgccga cgccgtattt
    11581 accgatggta aacgccattg ccccgaacgc accaataggt gccagacgca tgatcatatt
    11641 gatgatgccg aagatgacct gcgagaaact ttcgatcacg ttaaaaatca gttggccttt
    11701 gctgcccaga cggtggagcg caaaaccaaa cagtacggca aacagcagca cctgcagaat
    11761 gttaccgctg gcaaatgcgc caatgacgct cgccgggatg acatccataa tgaaggcgac
    11821 aatgccctgg tctttcgcct gatcggcgta aaccgctacc gctttcgcat caagcgttgc
    11881 cggatcgacg ttcattccgg caccaggctg cacgacgtta acgatgataa gaccaataat
    11941 cagcgcgatg gtactgacaa tttcaaagta aagcagtgcg actgcgccgg tacgaccgac
    12001 cgccttcatg ctttccatgc ccgcaatacc cgttacgacg gtacaaaaga tgacaggagc
    12061 gatgatcatc ttaatgagct taacgaagcc gtcgccaagc ggtttcattt gctcgcctat
    12121 ttcaggatag aaatggccaa ggagaatacc aatggctatc gctgtcagga cctgaaagta
    12181 aaggctttta aacagagagg ttttcatagg gtgtccttta gtaaaactac aggtcttgta
    12241 aggttatgag gtacctgcgg ccttaaaata acacccagac aacatcacag aaatgtacct
    12301 ggatcataat tgaaacaaaa aggttaaaaa gtttgagctg gctcgcacaa accagcactt
    12361 tttaaagttt tgtaatcagt ttggggtagc tacttttctt ccaggtaact ctcttcgaag
    12421 atttcaatag ggagtgggcg agcaaaaagg aagccctggg caataccaac gcccgctttt
    12481 gccagccagt cgcgttgtgc ttcagtctcc acgccttcgg caatcatttg taagttcagg
    12541 ctctgcgcca gcatgataat tgcagcaatc atgctgctat cttccggcaa gccttcaaca
    12601 aacattttgt cgattttcag tacgtcgatt ggcaacgatt tcatatgctg cagctgacgc
    12661 agccctgcgt agcccatgcc gaaatcatcc agcgccaccc gaactccggc attgcgcagc
    12721 ggacggagga ttgccaccgc agcatgaggg tcgtcaatac gtcggctttc tgtcacttcc
    12781 agaatcagtg ttcccggctg aatgcgatag cgggttaaca gttccagcat atccgccacc
    12841 atatttgggt gcatcagttg cagcgcagag aggtttaccg acaagggcag cataatgccg
    12901 cgctcttgcc aggctgcaag caatcgacag gactcttcca gcacccagtg accgacggta
    12961 accatcagcc cacagcactc aatgcgatcg attaagccat ccggcaggtc ccaactgcca
    13021 tccggttgct ggatacgcag taacacttcc gcactgacca gtttaccgct ggtcatctcg
    13081 acctgtggct gtaaccaaat agcaaactga tgattttcca gtgcattaag gatatcgctc
    13141 tcttccgtca accgcttctg ggcggcttcc atctgctgcg gatcaaagaa ctgaatctga
    13201 ttcttgcctt tatggcgagc ggtaaatgcc gcagaaatag cgcgactgta aagctgttcg
    13261 gcggtgagat cgccgtagaa catcgccacg ccaatgctac agtgcggacg gagttgaata
    13321 cgttcaatcg gcaggcgctc gctcatgata gtgagcactt gctgacctaa ggtgattgcg
    13381 tgccacggtt cctgtacacc gttggcaatg acagcaaagt cataaccgct aatctgcgcg
    13441 aggatcatac gtggcgacag taccgatttg agtttttcca ccagcgtcag cagcagaatt
    13501 tctcgttgcg cctctttcag cacgcccgca gtatcacgca gggtttcaca ggtgatgatc
    13561 atcagcgcgg tggtttgttt acgcgcgaca acctgctcca gcatctccat cagcaaggct
    13621 ttgttcggca aatccgacac cgggaagcgc atcgcatttt cgttctgttc ttcataatgg
    13681 cgctgcagca attgctggtt gaggttgtaa ctgcgcacca acataccgat ttcatcgtcc
    13741 tgatgcagac gcggtaatgc cagttggtga ccaacaagct cctgggctgg gatggcgtta
    13801 agttcgcgag caatattgcg taacggatgc aaaatcaggc ggttaatgca ccagctgatg
    13861 gcgacggtca ggataagcga caaaagtaag taaatggtca ctaacgttga gagggtgctc
    13921 atcacgaact tatacatacg gaaggaatcc gcctgtagta ccagataggc aattggctgc
    13981 gggtttgccg gacgttcgag cgagtaaacg cccagcgaga tttgaaccgg tagctcaaac
    14041 aggcgagtaa ccattaccgg caccgggcgc tctggaataa aacttttacg cagcgcctgg
    14101 aactggttag gcagcactac atcggcacgg ctgaccacgc ctgccggttt aatgctggca
    14161 agaatagctt ccgcttcggg aatatcgcct ttcaaaatag ctgaagataa gggttcgcgt
    14221 acagagcgag caatgctttc cagttgcgta gccgtgttat agcgattctg ctggaccaga
    14281 tggaacagca aaacggtgca aaaaataaaa acgaacacca ggacaacggc tgccaccatt
    14341 gccatctgct tgattgttaa cgagcgactt acgcgcaaat tgtctccccc cggaaatccc
    14401 agattgccgc ccgagtatac ccgatcgcag cggcattaag agaggcgcta tctgaaaact
    14461 taccagtcgg cgtaaggtat cagcggctgc ggcggtaaat ccatgtcacc ctgccatccg
    14521 gcggcggaat aacgtacgta gagcaggaaa tggctgggtg cgtaatcttt cgcctgctgg
    14581 atatcaattg ccgtgccaac aaaccagttg gaagtaacac gtcgttcaag taatgcccgc
    14641 gccgtgtagc cgaagccctg actgctgccg ccatcgttgg attgccgcgc agcttcttcc
    14701 tgccagtcgg tcgggatcag attcatcagc ggataacgca gcatggtttt ggtgcgtgaa
    14761 tgcgaccacg agccagacgc ccccagctcc cacgaccagt tttccgtgcg ctcccgccac
    14821 atcaccggta tagcaaacga caggtattcc tgcggactgt agtaaccgcc ctgaccgagt
    14881 gagtagccac tcagatcttt gtcgtaatgc cagatcatgt tgttcaggcc gattgtgacg
    14941 cggcgattgt tctggttaat gaccttatag taatagcccg tcatccagcg cacgcgccag
    15001 ttatcttcga catttttacc ggttaactgg tcgccactaa gcgatgccct gacgccgttt
    15061 gcttcacctt tatcgtagct cagacttagc cccacaccgt cggcacgtac gccaccccat
    15121 tttttcccgg tattgctcgg ggagtctttt tgcccaccaa aggccagcaa agaactggag
    15181 atgggccgac ggtgggcgtt aacggtgtaa ctcagcggcc cgatatcatc gctgtaactg
    15241 atgccgccga ccacatccac cacgttgaag cccatcggcg tggtaccgat atcccagctc
    15301 cagacgtcat ttcgccagcc gaccgccacg ctggcaccgg agtccgactg gctgcggttg
    15361 ccactacagt cctgtaatgt acaggtgccc cagttgtcat cccatttgcc atcggcatta
    15421 gtggagaaac tgccgacgtt catattgacg aaatcactgc gaaagaacat ccgcccgtca
    15481 gaatacggcg catccacctg caacatggta gtgtgcgctt tcagatcgga gtaaccaccg
    15541 gtgccgctcg aaccccagta atcgtgctcg agggtgacgt taagatcctg ctggcgatag
    15601 aggcccgccg catcgctacg cacgccgcgt ttcagccagt catctttctc gtcgttacgg
    15661 gtcagtcggg tgaatgtgtc gttatcctgc ggacgcgtcg tagtcacacc ggatgcgacc
    15721 atggcgtctt tgtaggtttc cagcgcctgc tttggatcgc ccgcctgcgc ttcaaacttc
    15781 gcaccgtcgc gcagcaccat cgcgctttcc atcgacggtg gctgagattt tgcctgcagg
    15841 atcaacttat taaacgtctg ctgcgccgct gcggtatctc caagctgcgc ctgcgccagc
    15901 gccacgcgcc gctgtgtgtt cagcgaggcg ttatcggtag cgggcagttt cgccagctgg
    15961 ctacgtgccg ccgctgtgtc accggcagca atatccactt ccgtcagccc cagaatggca
    16021 tcggcgttag ttggctccag cgtcaggaca ttctgatatg cagcgcgggc ggcggtgtaa
    16081 tcacgtcgct gctgcgccca gtcagccagc gtgaggtcaa tacgcgtgga aggtggttgc
    16141 tgacgcagca tcgcttctgc ttcagcttct ttgccgcttt ctcgcaggcg attagcggtt
    16201 tccagcacct gatcgctttg cagtcgatta accagctcct gaatattgct gttccactgc
    16261 gcgcgcggca ggctgttgat atgcgccagc gccgctctgt cctggtcatg accagagagg
    16321 tacagcccgt aagcgtaaac ctgctccggg tcgttcggct tctgctgcgc cagattgcgc
    16381 attaacgtat cggcctggct gcgttgtccg gcctgccaga gatcctgcaa aagtcggtaa
    16441 gtaatccata cgctgccggg gtccagcgcc agtcgttgcc gctgaagtgc tgccgcctgc
    16501 gcccatttgc cctggttttc cagtgcctct gcctgctgtg ccagacggtc gttttgcagg
    16561 ctgcgttcga tatcatcaat gctacgccgc tgactggcag agagcgaggc gataaacgct
    16621 tcagcttttt ctggcgattg ctggcggtaa atatttgcca gcccgcgcac ggcgttagtg
    16681 ttgccgctgt ccatacgcaa ggtctgctga taataacgtt cggcggcggg ataatctttt
    16741 cgcgccatcg ccacatcgcc cagccccagc actgcataac tgtcggtgtt atcgacatta
    16801 cgcgcctgct ggaacaggcg ttctgcccgg tcaggattat tggctttcag cgcagcatcg
    16861 ccctgctgga tcgccagcca gtagcggttt actttcagca gactgttcca tttgtcgttg
    16921 ttgctgctgt gcgggtccag tgcgagggct ttttccagat tcgccactgc attggcgcga
    16981 tcgcctttct gagaatacgc ctggcccagc gcccccagag cttcactgtc tttcgggttc
    17041 gcccgcaccg cctgttgtag ttcgggaatg gctttacccg ccataccaga gtccaccgcc
    17101 gctaaacctt gcgcacgagc gcggaaagca ggatcggcca gctgtttttg ctgttctgcc
    17161 agttgcgatt gcgcagccgc cacgctatcg ccatcactaa agatcgagag atattttttc
    17221 agcgccgaca cactggcatc actgacgggc atgtctttaa tctgcccgta ccagatttta
    17281 gaggcccctt cgcgcccggc gttcgatttt gccatctgtt ccaggacggc aaaaccttcg
    17341 tcacggcgat cgctactaaa cagcaatagc gccagattgt tttgcaggcc cgtattgccc
    17401 ggtgcatccg cattgatgcg ttttaactga ttaatcgctt cgccacggcg agccggaatt
    17461 ttcgccaccg tactccagta ctcgacagca atgtcacctt ccggcggcgc accgttgaac
    17521 agtttgttgt aactcgccac agcttcttct gcatgaccgg tcgtcgcctg caatcgtgcc
    17581 tgttgcagtg cctgacgacc atccggcgtg gaaagtagca tcgtagtccg cgacgattta
    17641 tacgcatttg aactcggcgc taactgcgac agccgatcga gctgtttttg cgcgccatca
    17701 atatcgccct gacgtaacaa agaacggaaa cgggcggcaa cgacgtccgg gttattcgga
    17761 tcaataagtt ccagccgata taacgactgt tgcaccagat cttcacgatg ggtcgcttcg
    17821 cctaaccgaa cttgctccag caactgttgc tgagcggttg gtgctgcctc gaccatcggc
    17881 atgacggaca gaccgaggga aagcgtgaat atgtttagtg tgaatttgcg cattcctggc
    17941 cccagtcagg taataactca ccttttgtcg agaagcggaa acggtgttga tcccagcctt
    18001 gtccaaacag ggtcagcaca tagttgtaat aggcatcgct gccgggaaag ttatcggcca
    18061 cgcgctggcg ctgaacggcc tgcgcatcgc ggttttgtaa aaagggcagc atggcggcag
    18121 aaaaaccgac tggtccttta ccctgcgctt tccccgtagc cacatccact ttttccggcg
    18181 gataaccgtt tttctcagtg aatgtcgcca tcggtttaaa ccggttgagc atccgcgctt
    18241 tctgcggatc gctgtcaggc atcatgccta cccacatgta aacgcggatg gcgtcgtagc
    18301 tgctgatcaa tgttttttcg gcttttagct gccagccttt gtctttctca taacgcaccc
    18361 agtctggcga aaagcctttc ggggcggttt ccagcaataa acgttgattg gtttcgcgca
    18421 gcgtagtcca cggcgcgcca aagcgggtga aatactgcgc cagcgtcggc ggcaggtagc
    18481 tggggttaaa acgccagctg ttatcctcag caaaacccac tttgcccggt aacaacatgg
    18541 aacccagccc aggcaccgtc accacttcct cccgcgcgat acgttttagc aacgcgctgc
    18601 cgatgtcggt ataacgctgc tctttccaca aacgccccgc ctccagcaac gaccaggcca
    18661 tccagacatc accatcggag gccgaattgc tgtccagcac ttcccactta ctgttctctt
    18721 tcttgcccca cagccaggcg ggcaaacgtt cttttaaaga accctgagcg agattgttct
    18781 gcgtccagtc gagaatatta tcgaaagctg cacggtcgtt agccgccagg gcaaagaaca
    18841 taccgtaact ttgcccttcg gaggtggtga ttttgcgcgc gtcgctgggg tcgatgacgc
    18901 gcccttcctg actgatgtaa tcctttttaa actgctccca ggcaggccag gtacaggctg
    18961 cctgaacact aaaggcagcc aacaacagca tcgtcacgat tccactacgc aacacattca
    19021 tcttcaatta ctcgttatcc gggttaagac gacgacgact aataattcgc agcagacgcc
    19081 acagtaccca tgccagcaat atcacactga tagccgccag cagaatcgga tggtttgcca
    19141 gcgcatacca cacgcgctcg aaccacggca gatgacctac gtaataaacg tcgccaacac
    19201 gtaggctgtt gataccggac tcgcggatca ccgcgaccga accgaacatg gtggcgcgtt
    19261 tgccgctatc gttcaccgca tcgttaagca tttcataacc gcgtgggcta tctgccaaca
    19321 gcgcaatcac gctgcgctgg tcgttatacg gcgactggaa gccaatcacc gccgccatcg
    19381 caccggaaga ggtcagcgtt gaccgggttt ctgccgcgcg atcgctctcg tccggcacaa
    19441 tgccggggaa cggggtctgg cgcatcggtg ttttcaccca gctttcggtc gcctgcacca
    19501 ataggtcgat ctgcttatcg tctttcagtt tgtccgggat accaccgatg atcatgatgt
    19561 cggcatcttt gccctgaatg gtgctgccat catcggtcac cgtcagatta atcgccggga
    19621 agcccgtctg tgcgccgata aaaccaacag tattcagcaa cgtttccatc tgtgcttcgt
    19681 taggcgcttt cggcatcacg gtgatggttt gcgacagatc cgccatccgg ctgaatggga
    19741 agcccgcgtt agcaaaggcg cgtagatccg gcatcgggat gaagtggtaa tacttcgaga
    19801 agtcgatggt ggagtcgtca ccaatcacca catgattctg caccggctgg aaggtaatac
    19861 agttatccac cgaaccgccc ggcatcgggt tcatatactc aaagtcgaag cgcagctggt
    19921 tggtcgcgcc cagtttcagc gccggaatag agacatctgt tttgccatcc agcaaacctt
    19981 gtaataccgg aatccgcagc agcaggcggt tcgcctcctg tttgctgctc aggttgaagg
    20041 attgcaggaa ctggttattc aggctgatat ccatccgcga actgtctttc accggcggca
    20101 tggtgtagcg gtaattaata tccatatcaa tgccggtact gcgcatcagg tagagatccg
    20161 gcggcaggtt tagcgaaacg ttaatcgctg ctggctcaag accgctggat tgtaactgtt
    20221 cttcataggt tttcagttcg ccaaatgtga ccggacgatc ggtacgtacc cagttcggcg
    20281 catcgtacgg cttacgcggt agcagcggtt tcacttcatt cactaccacg ctttcaccac
    20341 ggaacagaat gttaccctga gcgatacctt tcgctgcctg caacaggtct ttgtcgtcac
    20401 gaccaaacac caccagcagt ttgacgtaag gattctgcgg atggttgatc atctcaatca
    20461 ccggggcttt taccgccgga tgatcgcgca ggaagtccgg ccgtttgtcg ttggttgcaa
    20521 agacaatggc attacgatcc ggcagttggt tatagagcac cgggaagttc tgcccacgcc
    20581 agccagaacg cgaaccaaac cacgaggcga caatggcaga tgcttgttgc agcccaacat
    20641 ccggcgcacc cgcaaagacc atcggcaagg tgttagtacg gttatcgcgc gggtcaaaga
    20701 atggcaccgg gaagtgtgac aggtcattct tcacattcag ggtctgatag gtcagatcca
    20761 gtccactgct ccgcccaaca tccagccaaa gcgtggtgct ggccgggttt tcgcacacgt
    20821 cctgataatg gccgacaaac tccagccgca cacggttgaa gtcggtaata aacagtgggt
    20881 taatgggcat ttgcgccagc gtttttttac ccaactgttc tttggtcact ggcagtacgc
    20941 ccatcagctc atcattgaga taaaccttta actgcgactg gacaggcagt aacgatggcg
    21001 atggcatgta ttcgaggttg agcatcgcct tcgtcaccac ttcatcgctg cgcataccaa
    21061 actcaatgct gccgttcggg ttaatgccac gtagcaccat gctgcccggc ggcggcgcaa
    21121 tttgcgcaaa ggtcagcttc acatcacgcg aaggaccgtt ctgcgccacg actggcgcat
    21181 cagcgccctg cacgcccggc atcacttgcc ccacctgcgg attttgttcc gtctgggcgg
    21241 ctacagctgg ctcagcattg atcagtggtt gcgttgctgg cgtcgcctgc gtcatgaaag
    21301 aggggaacgc actcatcccc atagccactg cacaaatcca gaatagtttt cttttcatcg
    21361 cgttatcatc attgttgagc caaagcctga tccgatggtt gtgccgtttc gctccgctcc
    21421 gggcggcgca gaataaacga tacaacccag gaaaccagag aagtcagcac acggaatatg
    21481 cccttcaccg aagaaggcgc aaactccgcc agatggcggt agccacggaa gccgagcttc
    21541 agaatatcca gcagactttc cagcggctta tcttccgggt agctgtcctg ccagagcgcc
    21601 catgtatccg cacgggcaaa cgtacactgc acaaaatcga tatgttgttg ggtggtgagc
    21661 ggcattaatt tcagcccaac ttcattaccc atcacgcgcg ccacctgggt cgggaagacg
    21721 tattcctgct gaccgcgttt aagcaacaga ttcactttct gcccttccag aatctgcgcc
    21781 tgaccgttga tcttgatccc caaaccaccg tcggagaaat cctgaacggt acacgaaaag
    21841 aggtgaccat cttcgcgggc aattgccgcg ggcatcgtca tctccacgcg gtgcgatcgg
    21901 cgtacctgtt tgctttctac cgataccgca actgcgccgc caagaacaat caggttgtag
    21961 aacacccaca ccatactgac gaccacggtg agcatctcgg ttggcgggcc atagaagtag
    22021 cgccagatgc cgaccgcaac acccaccagg ttgagcagaa caaggaagat gtagggccgc
    22081 gagatcaccc agtcgacgta ctcttcttcc accagtccac ctttggcggt gacgttaaat
    22141 ttgcctttgt gcgggttaat cagcgccacc agcgtcggtg gtgcgatata ccacgccagc
    22201 accgtttcgt agatttcact ccagaaagag tggcgatatt tgccctggat cttcgagttg
    22261 gtcaggctgg catggatcat atgcgacagc acgaacaggg cgatcatcaa cgctggcgca
    22321 tagatgatgt aggcatgaag cagcaggaac gccagcggcg cagtcaggaa gatcagtcgt
    22381 ggaatgcccg acaagaagtg gaacatggcg ttgacgtagc acagccgctg ggcgaatttc
    22441 agccctttac cggtaagcgg gttatcgaga cggaagattt gcaccatccc gcgtgcccag
    22501 cgaatacgct gaccgatatg cgccgacaga ctttcggtcg ccagccccgc cgcctgcgga
    22561 atacgcatat atgcagaggt gtagccacga cagtgcaggc gcagagacgt gtgcgcatct
    22621 tcggttaccg tttcgacagc aataccgcca atttcatcca atggtttgcg acgaattact
    22681 gcacaggaac cgcagaagaa agtggcgtcc cacatatcgt tgccatcctg caccagacca
    22741 tagaacagag tgccttcgtt cggcgtttta cgaaaacgcc ccaggttgcg ttcaaacggg
    22801 tccggcgaga agatgtggtg cggcgtctgc atcatcgcca gctgtttctc tttcaggaac
    22861 cagcccatgg tcatttgcag gaacgatcgc gttggtacgt ggtcgcagtc gaaaatcgat
    22921 acgaactcgc ctttggcata tttcagcgca ttgttgatgt tgcccgcttt cgcatgttca
    22981 tgagtggtgc gggcgatata tttcaccccc acgttttgcg caaactggcg aaactcttcc
    23041 ctgccgccgt catcgaggat ccagatgttc agtttgtctt tcggccagtc gatacccagc
    23101 gaagcgtaaa tggtattttt caccacgttg agatcttcgt tgtaagtcgg gacaaagata
    23161 tccaccgacg gccacagcga catatctttc ggcaatggca ccggctgacg attcagcggc
    23221 catacgacct ggaagtagcc gagcaccagc acaatccacg cgtacgtttc agcgaagagc
    23281 agaataagcc cgcacaccag gctgaccgga tcgtcccagt tcagcgtaga ggtgtaacgc
    23341 caccagatat aacggcaaga aacggtcagc gacagcacaa tcaacattag cgccgagaag
    23401 cgccccggca tccgccgtac gatcagcgct acaccccaca gcagcatcag gaagataaac
    23461 tgcgccagcg ggttaaacgg ttgagtaacg cagattaacg ccagaatcag cgagaaggtg
    23521 acgatgatac cgaggatcaa ccgccgcgcc ccggcactca aatgaccgag ctcttttttc
    23581 tcatcaagat gctgtgtttt atggctaacg cgctcaggca gctcgttcat ccattgatgg
    23641 taacgtccac gaatattctg cagacctgaa aatgcccgcc tgcgcggttt cggcgtttct
    23701 ttgcgcgatg taccgatcag taaccagcat gtttgaatga gataacggac cgggtccagc
    23761 ggacgcggac gcgaggcgtt gatatgcgga tacaggtttt tatgttctgc gcgaatacgc
    23821 tgccagcgcg ggtgctccag cggaataaaa atccaggcca ggatcatcca gaaacagccg
    23881 agcgtcgcgc tgaaagccga cgcaccgtga cgacgataat cgcgataacg cccgataagc
    23941 cgcgcgttga ccggcgggat aagcaaccac cgggtcagga tactcatgat gcactcccga
    24001 ctggcgtttt cagcccggag tagttcaaca ggcaccagtt cgccagcgtc agtatctctt
    24061 cagccgccag cgcatcactg cgatattcac ctactggttg cttagccgcc aggcattcag
    24121 ccatcgcttc atcacgatga atgagcatcg gcagtaatcg gcgctggctt tgcaaccaaa
    24181 gctggtaaat atcgtcctga acctgactgc caatacggaa gtcattaatc aaaatatgtg
    24241 cgccatccgg cagcgcttgc tgatgcagtc ggatatggca gttggcatcc acattgacga
    24301 ttgccagcga gtgatcgcac aaactcagca gctggtgggt tatctgcgag gcatcacgcg
    24361 gtaagtcgat taaaatccac tggtaacgcc cgctggcttt tagttgctgt aagccggagc
    24421 aaatatcgct cagccgggtt tgccagtgct gtggattttc ttgttcttca atggataact
    24481 gaccaaaagg cagcaaatcg agctgcgagg tgtagcgcaa cccagcgtca cgccagtcct
    24541 ggccatccag catcgctctg gcccagccct gacggtgggt aaaatcaaca ttaaatgaca
    24601 ggcgcaacaa gttgtccggg caggcatcga ccaccaggac attttctccc aacatttgta
    24661 atgaccaggc taatgcggcg gtgatggttg ttgtccccac gcctccccgc accccctgca
    24721 atcccagtac ggccattcac caatccccta cttttgttgc gcaaactctg ccagcaacgg
    24781 ccagcgtttt aatgccgcgg ccaactgttc gcgttgggaa atatcggcat aatcaatatc
    24841 aggcagtgaa aatacctgct ttaacgccac aatatcattc tggaagatat agcctatcgc
    24901 gggatcaggc agagtatctg gttcattgtt attcattttg cttgatccct atgaaataac
    24961 cgtaccgttc atgagacaat tctaaccgtg agcatttcgc cggtttattg tttacggcga
    25021 gacgggaatt tgctcacttt ttgactttcc gttacgcaac agaaaaagtt aaaaacgaaa
    25081 agactaaaat cacacgtctt gtgaccttct aaattgattc acatg
//
LOCUS       DAJVUN010000048        24455 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.048, whole genome shotgun sequence.
ACCESSION   DAJVUN010000048 DAJVUN010000000
VERSION     DAJVUN010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24455
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.048"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(162..893)
                     /gene="rlmB"
                     /locus_tag="OQQ76_001617"
     CDS             complement(162..893)
                     /gene="rlmB"
                     /locus_tag="OQQ76_001617"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HCS1968162.1"
                     /translation="MSEMIYGIHAVQALQERAPERFQEVFILKGREDKRLLPLIHALE
                     AQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDG
                     VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRT
                     MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM
                     AGSVSSLNVSVATGICLFEAVRQRS"
     gene            complement(1074..3515)
                     /gene="rnr"
                     /locus_tag="OQQ76_001618"
     CDS             complement(1074..3515)
                     /gene="rnr"
                     /locus_tag="OQQ76_001618"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HCS1968163.1"
                     /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVEL
                     HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE
                     GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
                     GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM
                     GTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA
                     RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLP
                     EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG
                     DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAECRIERIEQT
                     QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL
                     PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF
                     TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD
                     EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY
                     RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE
                     KAKKGDAGKKGGKRRLVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIA
                     AATKAKRAAKKKVAE"
     gene            complement(3554..3979)
                     /gene="nsrR"
                     /locus_tag="OQQ76_001619"
     CDS             complement(3554..3979)
                     /gene="nsrR"
                     /locus_tag="OQQ76_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing transcriptional repressor
                     NsrR"
                     /protein_id="HCS1968164.1"
                     /translation="MQLTNFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVK
                     IINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPAC
                     RLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE"
     gene            complement(4184..5482)
                     /gene="purA"
                     /locus_tag="OQQ76_001620"
     CDS             complement(4184..5482)
                     /gene="purA"
                     /locus_tag="OQQ76_001620"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HCS1968165.1"
                     /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL
                     VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSE
                     ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE
                     KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF
                     VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA
                     GPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD
                     VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL
                     PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA"
     gene            complement(5586..5783)
                     /locus_tag="OQQ76_001621"
     CDS             complement(5586..5783)
                     /locus_tag="OQQ76_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HCS1968166.1"
                     /translation="MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRR
                     FGGGLVVAGVVVYYMLRKTIG"
     gene            complement(5865..6869)
                     /gene="hflC"
                     /locus_tag="OQQ76_001622"
     CDS             complement(5865..6869)
                     /gene="hflC"
                     /locus_tag="OQQ76_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HCS1968167.1"
                     /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNK
                     PLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR
                     YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA
                     GTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE
                     VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD
                     AEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
                     "
     gene            complement(6872..8131)
                     /gene="hflK"
                     /locus_tag="OQQ76_001623"
     CDS             complement(6872..8131)
                     /gene="hflK"
                     /locus_tag="OQQ76_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HCS1968168.1"
                     /translation="MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDI
                     FRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKE
                     AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE
                     MNVQYRVTNPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR
                     ELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQ
                     PRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKV
                     LGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASN
                     TSSTSQGDIMDQRRANAQRNDYQRQGE"
     gene            complement(8217..9497)
                     /gene="hflX"
                     /locus_tag="OQQ76_001624"
     CDS             complement(8217..9497)
                     /gene="hflX"
                     /locus_tag="OQQ76_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HCS1968169.1"
                     /translation="MFDRYDAGEQAVLVHIYFTKDKDMEDLQEFESLVSSAGVEALQV
                     ITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT
                     EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ
                     ATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEE
                     NKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE
                     WMEEDGSVSLQVRMPIVDWRRLCKQEPALIDYLI"
     gene            complement(9574..9882)
                     /gene="hfq"
                     /locus_tag="OQQ76_001625"
     CDS             complement(9574..9882)
                     /gene="hfq"
                     /locus_tag="OQQ76_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HCS1968170.1"
                     /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVSHHSNNASGGTSSNYHHGSSAQNTSAQQDSEETE
                     "
     gene            complement(9968..10918)
                     /gene="miaA"
                     /locus_tag="OQQ76_001626"
     CDS             complement(9968..10918)
                     /gene="miaA"
                     /locus_tag="OQQ76_001626"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HCS1968171.1"
                     /translation="MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA
                     LIYKGMDIGTAKPNAEELLAVPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIP
                     LLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARI
                     HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRF
                     HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATR
                     QLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG"
     gene            complement(10911..12758)
                     /gene="mutL"
                     /locus_tag="OQQ76_001627"
     CDS             complement(10911..12758)
                     /gene="mutL"
                     /locus_tag="OQQ76_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HCS1968172.1"
                     /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
                     DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASI
                     SSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF
                     LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGT
                     AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQAC
                     EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL
                     ETPLPLDDEPQPAPRSIPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPN
                     AQPGYQKQQGEVYRQLLQTPAPMQKLKAPEPQEPALAANSQSFGRVLTIVHSDCALLE
                     RDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALA
                     ELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLM
                     SEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKDE"
     gene            complement(12768..14105)
                     /gene="amiB"
                     /locus_tag="OQQ76_001628"
     CDS             complement(12768..14105)
                     /gene="amiB"
                     /locus_tag="OQQ76_001628"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiB"
                     /protein_id="HCS1968173.1"
                     /translation="MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFI
                     GDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDL
                     TENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP
                     FKTESNRTTGVISSNTVTRPTARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNV
                     TIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNR
                     SATGASVWVLSNRRANSEMASWLEQHEKHSELLGGAGDVLANSQSDPYLSQAVLDLQF
                     GHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEE
                     RLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN"
     gene            complement(14124..14585)
                     /gene="tsaE"
                     /locus_tag="OQQ76_001629"
     CDS             complement(14124..14585)
                     /gene="tsaE"
                     /locus_tag="OQQ76_001629"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HCS1968174.1"
                     /translation="MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTF
                     SRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFAND
                     AICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARLAG"
     gene            complement(14557..16104)
                     /gene="nnr"
                     /locus_tag="OQQ76_001630"
     CDS             complement(14557..16104)
                     /gene="nnr"
                     /locus_tag="OQQ76_001630"
                     /EC_number="4.2.1.136"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HCS1968175.1"
                     /translation="MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLR
                     AGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLFAQESDKPLP
                     EEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSH
                     PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKPGLLTGKARDVTGQLHFDSLG
                     LDSWLAGQETKIQRFSAEQLSHWLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEA
                     ALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSLTESLEWADVVVIGPGLGQQE
                     WGKKALQKVENFRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES
                     DRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDALGIIDAGNAGMASCGMGDVLSGIIGA
                     LLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVTDKNHD
                     ESSNSAP"
     gene            16103..17242
                     /gene="queG"
                     /locus_tag="OQQ76_001631"
     CDS             16103..17242
                     /gene="queG"
                     /locus_tag="OQQ76_001631"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HCS1968176.1"
                     /translation="MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWL
                     DKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVS
                     RYAQGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKH
                     SLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR
                     CISYLTIELEGAIPEELRPLMGNRIYGCDDCQLICPWNRYSQLTTEEDFSPRKPLHAP
                     ELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEH
                     PLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA"
     gene            complement(17225..17278)
                     /locus_tag="OQQ76_001632"
     CDS             complement(17225..17278)
                     /locus_tag="OQQ76_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968177.1"
                     /translation="MRFYFYSQAVDESGVTR"
     gene            complement(17507..17582)
                     /locus_tag="OQQ76_001633"
     tRNA            complement(17507..17582)
                     /locus_tag="OQQ76_001633"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17547..17549),aa:Gly,seq:gcc)
     gene            complement(17619..17694)
                     /locus_tag="OQQ76_001634"
     tRNA            complement(17619..17694)
                     /locus_tag="OQQ76_001634"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17659..17661),aa:Gly,seq:gcc)
     gene            complement(17905..18450)
                     /gene="orn"
                     /locus_tag="OQQ76_001635"
     CDS             complement(17905..18450)
                     /gene="orn"
                     /locus_tag="OQQ76_001635"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HCS1968178.1"
                     /translation="MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGP
                     TIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS
                     PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQA
                     MDDIRESVAELAYYREHFIKL"
     gene            18545..19597
                     /gene="rsgA"
                     /locus_tag="OQQ76_001636"
     CDS             18545..19597
                     /gene="rsgA"
                     /locus_tag="OQQ76_001636"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313167.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HCS1968179.1"
                     /translation="MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIV
                     ISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHE
                     RTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLN
                     KIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV
                     GKSSLLNALLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW
                     HLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILE
                     SMAQVKTRKNFSDTDD"
     gene            19694..20662
                     /gene="psd"
                     /locus_tag="OQQ76_001637"
     CDS             19694..20662
                     /gene="psd"
                     /locus_tag="OQQ76_001637"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313166.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HCS1968180.1"
                     /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY
                     YKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEED
                     KILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
                     PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT
                     PPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSV
                     TKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV"
     gene            20684..24007
                     /gene="mscM"
                     /locus_tag="OQQ76_001638"
     CDS             20684..24007
                     /gene="mscM"
                     /locus_tag="OQQ76_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="miniconductance mechanosensitive channel MscM"
                     /protein_id="HCS1968181.1"
                     /translation="MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPE
                     VVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMS
                     TDALNQEILQVSSQLLDKSRQAQQEQERTREIADSLNQLPQQQTDARRQLNEIERRLG
                     TLTGNTPLNQAQNFALQSDSASLKALVDELELAQLSANNRQELARLRSELAEKESQQL
                     DAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQA
                     QRMDLVASQQRQAASQTLQVRLALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQ
                     QLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNS
                     LLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDL
                     RRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVG
                     KVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLL
                     WVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDRE
                     FSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVA
                     ILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAE
                     MLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLW
                     SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE
                     LAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG
                     LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK
                     AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFL
                     VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNG
                     KQTGRTLTSAGKGRQAGSL"
     gene            complement(24158..>24455)
                     /locus_tag="OQQ76_001639"
     CDS             complement(24158..>24455)
                     /locus_tag="OQQ76_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1968182.1"
                     /translation="LPYLFLALAFPFFKARQDLDRPFVIFKTRMSAMIATVVVVLVVT
                     FANVFTIIPPVVEVGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRMANKPEVALD"
BASE COUNT         5613 a         6855 c         6227 g         5760 t
ORIGIN      
        1 agcgccgtcg ccagcgccaa cagattccat gtcatatatt attccatata gatttagttt
       61 aaatattaat aaaatgaata tttgcagtac gtaattatct taccagctat agacaaaaaa
      121 aaaccatcca aatctggatg gcttttcata attcagagga actagctgcg ctgacgcacc
      181 gcttcaaata agcaaattcc ggttgcaacc gaaacgttca gagaagaaac acttcctgcc
      241 attgggatgc tgatcaactc atcgcaatgt tcacgggtca ggcgacgcat accttcacct
      301 tccgcgccca tcaccagcgc caggcgtccg gtcattttgc tctgatagag tgtatgatcc
      361 gcctcacctg ccgtaccgac gatccagata ttctcttcct gcaacatacg catggtacgc
      421 accaggttag tcacccgaat cagcggaacg ctttctgccg cgccacaggc cacttttttc
      481 gccgtggcgt tgagctgggc ggagcgatct ttcggcacaa tcaccgcatg aacaccagcg
      541 gcatctgcgc tacgcaggca cgcgccgagg ttatgcggat cggttacacc gtcgaggatc
      601 agcaggaacg gctgatcgag cgaagcgatc agatccggca aatcattttc ctggtactga
      661 cgtcctggct tcacgcgggc gataatgccc tgatgcacgg caccgtcgct tttctcgtcg
      721 agatattggc ggtttgccag ctggataacc acgccctggg cttcgagggc gtgaatcagc
      781 ggtaacagac gtttatcttc acggcctttt aaaataaaga cttcctgaaa acgttcaggg
      841 gcgcgctcct gcagggcctg cactgcgtgg atgccgtaaa tcatttcgct cattaatgta
      901 ctcgttgttt acgttttgcc tgatgcacta cgtttatccg gcctacatga tctctgcaat
      961 atattgaatt tgcgtgatta tgtaggccgg ataaggcgtt cacgccgcat ccggcatgaa
     1021 caaagcgcat tttgtcagca atctaaccct cttctgtttg aagagggtaa tgatcactct
     1081 gccacttttt tcttcgccgc acgcttcgct ttggtcgcag cagctatttt ctgcgttttc
     1141 gccgatggct ttttcgcttt tctcgcgtct ttcttcgctg ctttcggctt cgtttttttc
     1201 tcaccgcgga aggcgctgtc tggctcaaag tttacctttt taccgaccag acgacgcttg
     1261 ccgccttttt tacctgcatc gccttttttc gctttctcgc gcgccgtttt accgacgttg
     1321 cgcggtgcgc gttcgctgga gatcaggcta aagtcgattt tgcgctcgtc catattaacc
     1381 gcttcgacgc gaacttccac gcgatcgccc agacgataag tctggccgct ggattcaccc
     1441 atcagccgtt gccctacctg gtcaaagcga tagtagtcat tgtccagcga agagacatgg
     1501 accagaccat caatgaataa gtcgtccaga cggacaaaga atccaaagcc agtgacgctg
     1561 gaaattacgc ctttaaagac gttacctacc tggtcgagca tgaagtcaca cttcagccag
     1621 tcagccacat cgcgcgttgc ttcgtcggca cgacgttccg ccatcgaaca gtgctgaccc
     1681 agttgcagca tttcttccat cgaataatgg tagccgccgg tttcagtggt gttgccctga
     1741 tgcccctgct ctttcgccag cagatattta atggcgcggt gcagcgtcag gtctggataa
     1801 cgacgaatcg gcgaagtaaa gtgcgcatag gactgcaatg ccaggccaaa gtgaccacgg
     1861 ttttctggat cgtaaatcgc ctgtttcatc gagcgcagca gcatggtttg cagcatttct
     1921 gcatcaggac gatcggcaac cgactccagc agctccgcgt agtcacgcgg ttccggcttg
     1981 ttaccgcccg gcagttccag ccccagctcc gccagtactg aacggaaaga ggtaatcgct
     2041 tcggtgctcg gcttgtcgtg aatacggaac aatgctggtt ctttggcttt ctcaacgaaa
     2101 cgcgccgccg agatattcgc cagaatcatg cactcttcaa ttaacttgtg tgcgtcgtta
     2161 cgctgagtct gttcgatacg ctcaatacgg cattcagcgt tgaaaataaa cttcgcttct
     2221 tcgctctcaa atgagatccc gccacgttct tcacgggctt tatccagcac tttatagagg
     2281 ttatgcaact cttcgagatg cttaaccagc ggagcgtact gctcgcgcag atcctgatcg
     2341 ccctgcagaa tatgccagac tttggtgtag gtcagacgcg cgtgagagct catcaccgct
     2401 tcgtagaatt tgtagcccgt caggcggcct ttcgacgaaa ccgtcatctc gcacaccata
     2461 cacaggcggt ctacctgcgg attgagcgag cacagaccgt tagagagcac ttccggcagc
     2521 atcgggataa cctgcgaagg gaagtacacc gacgtaccac gattacgcgc ttctctatcc
     2581 agcggcgttg gcggacgcac atagtagctg acgtcggcaa tcgcgaccca taaacgccag
     2641 ccgccgccgc gttttttctc gcagtaaacc gcatcgtcaa agtcacgggc gtcttcgcca
     2701 tcaatggtga ccagcggtaa atcgcgcaaa tcgacacggc ccgcttttgc ttcttccggc
     2761 acttcttctt tcagcccggc aacctgttgc tcaacagcct gcggccagat gtacggaatt
     2821 tcatgggtac gcaaagcgat atcaaccgcc atgccggtgc ccatattgtc gcccagcact
     2881 tcgacgattt tacccaccgc tttggtacgg cgagtcgggc gttgggtcag ttcaacaacc
     2941 accacaaagc ccatccgcgc gcccatgatc tgatcgggcg ggattaagat atcgaagctc
     3001 agacggctat cgtcaggaac cacaaagccg acgcccgctt cggtaaagta gcgaccaaca
     3061 atctggctgg tttttggcac cagtacgcgg acaatacgcg cttcacgacg acctttacgg
     3121 tcagcaccca gcggctgagc cagcacctga tcgccatgaa tgcaggtttt catctgctcg
     3181 ctggagagat acaaatcatc tttacgccct tcaacccgca gaaagccgta gccatcacgg
     3241 tggccaataa cggtaccttt caccaggtcg aggcgttccg gcagcgcata gcactgacga
     3301 cgagtgaaga ccagttgacc atcgcgctcc atcgcgcgca ggcggcgacg caggccttca
     3361 agctgctctt cgccttcaat gtgcagttct accgccagct catcacggct ggccggtttt
     3421 tcacgtttgg ttaaatgttc gaggataaat tcccgactag ggatgggatt cgcgtatttt
     3481 tcagcttcgc gttcctggaa aggatcttgt gacatctcgg ttcctccgtt gtcatctctg
     3541 atgaagattt tcgtcactcc accagcaata atttataaag cggttgattc tcttcaacca
     3601 aatcggcaag cgtgtagtta tccagttccg taagaaaact ttgcacggcc ttagaaagcg
     3661 cctgtttcaa ccgacaggca ggtgtaatgt ggcaaaactc actgctgcaa ttcaccagcg
     3721 ataagggctc cagctcgcgc accacatcac caatacgtat cgcactcgcc ggtttaccca
     3781 agcgaatgcc gccatttttt ccacgaacag cagtcacgta gccggcacga ctaagttgat
     3841 tgattatttt gaccatatga ttacgggaga cgccgtagac gtcagtcact tcagaaatac
     3901 tggtcatccg cccttctggc aatgacgcca tgtagatcag cgcacgtaat ccgtaatcag
     3961 tgaaattcgt taactgcaca tcaacctcaa aagggaaatc gggaaaaaat acatttatat
     4021 tgatgataaa ccagccacaa gctgtgtcgc taatttattt cagttcgggg aaggaaaaaa
     4081 gcgaggattt aacactgtgt cggatagcgt aatggcttaa ccgacacagc aatgtatcac
     4141 actgttagcc cggcaggcaa aatatctgcc aggcgtacca gaattacgcg tcgaacgggt
     4201 cgcgcagaat catagtttca gtacgatccg gaccggtaga gatgatatcg atcggcacac
     4261 cggtcagctc ttcaatacgc ttgatgtagt tcagcgccgc ctgcggcagc ccgctacgat
     4321 ctttcacgcc gaaagtggat tcagaccagc ccggcatggt ttcgtaaatc ggctctacac
     4381 ctttccagtc gtcagctgcc agcggagtgg tagtcacttc gcgaccatcc ggcatacggt
     4441 aagccacgca gagtttaacc tctttcaggc catccagaac gtccagttta gtcaggcaga
     4501 agccagacag ggagttcagc tgtaccgcac gacgaacggc aacggtgtcc agccagccgg
     4561 tacgacgacg acgacccgtc gttgcgccga attcgttacc ctgcttgcag aggaactcgc
     4621 cagtttcatc aaacagttcg gtcgggaaag gacctgcacc cacacgagtg gagtaagctt
     4681 tgaggatacc cagaacgtaa tcaacataac gcgggcccag gccggaaccg gtcgccacgc
     4741 caccagcagt ggtgttggaa gaagttacgt acggataagt accgtggtcg atatccagca
     4801 gcgtaccctg cgcaccttca aacatgacga aatcgccacg ctgacgcgcc tggtcgagca
     4861 ggtcagaaac gtcaaccacc atagaagtca ggatgtcggc aacagccatc gtatcatcca
     4921 gaactttctg gtaatcaacc gcttcagctt tgtagtagtt aaccaactgg aagttgtgat
     4981 attccatcac ttctttcagt ttttcagcga aggtttcttt gtcgaaaagg tcgccaacac
     5041 gcagaccgcg acgtgccact ttatcttcat aagcaggccc gataccacga ccggtggtgc
     5101 cgatcgcttt cgcgccacgc gctttctcac gcgcgttatc cagcgcaacg tgataatcaa
     5161 ggatcagcgg acatgcttca gacagcagca gacgctcacg aacggggatg ccacggtctt
     5221 ccagttcttt catctctttc atcagcgcgg ccggagacag cacaacaccg ttaccgatga
     5281 tgctggttac attctcgcgg agaatacctg atggaataag atggagaacg gttttttcac
     5341 cgttgattac gagagtatgg cctgcgttgt gaccgccctg gtagcgtaca acatatttag
     5401 cccgttcagt cagaagatcg acgatcttac ctttaccttc gtcaccccat tgggtgccca
     5461 gtacgacgac gttgttaccc atttttcaaa atcaccgttt gcttaaaaat ggattctacc
     5521 atcgcttttt cagagttaca gcactttttg cactcaaaaa tgacctcgat cagtctgttt
     5581 tttgttcagc caatcgtttt cctcaacatg tagtagacca caacgcccgc aaccacaagt
     5641 ccaccgccaa aacgacgtaa aatattatcg ggcaaattgg tcatcgcaga gatcatcttc
     5701 ttccatgcct tcgggtaaag catcggccct aaaccttcca gtaccaaaac cagggcaagc
     5761 gccagccaga ttgtcgaatt cattcattat ccttatagaa aaagaaaacc accgacatcc
     5821 ctgaggatgc ggtggcttta ttgacctgta ccgcagtcgt tatattaacg cgttgcggaa
     5881 gtcggcgtct tcatgtagcg gaagaaatcg ctatccgggc tcatgaccat cacgtcctga
     5941 ttgccagaga agctgttctc ataagcacgc aggctacgga tgaatgcgta gaagtccgga
     6001 tctttactga atgcatcagc aaacagtttg gctgcttcgg catcgccttc accacgcatg
     6061 atgcggccct gacgctcagc ttctgccagc gttctggtca cttcatagtc ggcagtcgcg
     6121 cgcagttttt ccgcttcttc ctgaccttgt gaacggtgac gacgcgctac cgcttcacgc
     6181 tcggcgcgca tacggttgta gatcgcttca gacacttcgg tcggcaggtt gatctgcttg
     6241 atacgcacat cgacaacttc aatacccagc gccgccatac tgttcgggtt gatgaccgga
     6301 actttgccct tcgtctcagc cgttacgcgc tctgccgctt cggcaatggc gttatctgct
     6361 gccggggtag taacttcatc ttctgtaccc gcagaaccgg agttcagcgc gtcacgtact
     6421 tcgagggtca gacgaccacg ggaatcagtg acgatatctt tcacgtccag gcgaccaatt
     6481 tcagaacgca gacggtcaga gaacttacgt ttcaacagca cttccgcttg cgaaatgtcg
     6541 ccaccacccg ttgccaggta gtaacggctg aaatcgctga tgcgccattt gatgtaagag
     6601 tcgacgatca ggtctttctt ctctttggtc acaaagcggt cggcctggtt gtccatggtc
     6661 tgaatacgtg cgtcgagcat tttcaccgtt tcaatgaacg gtatcttgaa atgcagaccc
     6721 ggctcataaa ccagaggttt gttgtcatcg tcacgcagta ccttaccaaa acgcagcgta
     6781 ataccgcgct caccttcttt gacgacaaag acagacatgt aaagcactac cagcacgatg
     6841 atgataatcg cgataactga cttacgcatc gttattcccc ctgacgctgg tagtcgttac
     6901 gctgcgcgtt ggcgcggcgt tggtccataa tatcgccctg actggtggac gacgtgttgc
     6961 ttgctccact ggttgtggag gaagaggctg gcggcaaacg cagcagattg ctggcaccgt
     7021 tatcgctctt cgccgcaggg gcgttaccac ctttcagcat ctggtctaac ggcagaacca
     7081 tcaggttgcc acctttatcg ttaaccagca ctttgcgggt gttacccaac actttttcca
     7141 tcgtctcgat atacagacgc tcgcgagtaa tttccggcgc ggctttatat tccggcagaa
     7201 gtttagcaaa gcgcgccact tcaccctgag cttccaggat ggtctgggcc ttgtacgcac
     7261 gcgcctcttc gaggatacgt tgcgcctgac cgttcgcacg cggctgaact tcgttggtat
     7321 acgcttctgc ttcacgaatg tattgctgtt cgttttcacg cgcggcaatc gcatcgtcaa
     7381 acgccgcttt tacttcttcc ggcggacgag cagcctggaa gttgacgtcc agcagagtga
     7441 tgcccatgtc atacggacga atcgtctctt ccagttcgcg ctgggtatcg ctacgaatca
     7501 cggtacgacc ttccgtcaga atgcggtcca tggtgtattt accgataacc ccgcgcaggg
     7561 cgctgtcggt agcctgacgc aggctgtcat ccgggctggt cacgctatac agatattttt
     7621 ccggattggt aacgcggtac tgcacgttca tctcaacgcg cactacgttc tcgtccgacg
     7681 tcagcatcac accggaagcg gccagttcac gcacggcttc cacgtttacc ggtttgactt
     7741 cgtcgataaa cgtcggtttc cagttcagac ccggctcaac cagatggctg aatttaccaa
     7801 agcgtgttac cacgccgcgt tcggcttctt taatggtata gaaaccactg gccgcccaga
     7861 taatgacaat cgctgccgct gcgatggtaa cgacacgacc gccaagctgc gggcgcgggc
     7921 cttgcgatga actgccaccg ccagatccgg tgcctttacc gccgcccaga ccaccgagct
     7981 ttttgctcag tttgcggaag atatcatcta aatcaggtgg cccttgatcg cgaccgcctt
     8041 tgtttccatt tccctcagag ttgccgccag gtttgctgct tccccacggg tcgcggtctt
     8101 gtccgttatt accgggctga ttccacgcca tgtttgtgct ccatatttgt tatgcggtga
     8161 tccctgttgt ctttcgacgc cagaggatat gactccacgc ttcagacgct acgccgttag
     8221 atcaggtaat cgatcaacgc cggttcttgt ttacagaggc gacgccagtc aacgatcggc
     8281 atacgaactt gcagacttac gctgccgtcc tcctccatcc actctttttc tattgcctga
     8341 agctgataaa aacgacttct cagacgccct tcctgcggtg gcagacgcaa tgtatgctgc
     8401 gccacctcgc cggaaagccg ctccgtcaaa gcctgaaaaa gctgtggtat ccccgctccg
     8461 gtctgtgcgg aaagccagac acggatcggt ttgttctctt cgtcccgatc aatacgcggt
     8521 tcgaaatctt ccagcatatc gatcttgttc atcaccagca gggttgggat ctcgtgagcg
     8581 tcgatctctt caagaaccgt attcaccgct tcgatgtttt cttgtacacg cacatccgcc
     8641 gcatcaatga cgtgcagcag taatgtggct tgccgcgtct cttgtaacgt ggctttaaat
     8701 gccgccacca gatcgtgcgg cagatggcga ataaacccta cggtatctgc aagtacggtt
     8761 tcaccgacat ccgcgacgtc aatacgccgc aacgtcgggt cgagggtggc aaacaactgg
     8821 tctgccgcgt agacccgcgc ttcggtgatg cgattgaaaa gggtagattt accggcgttg
     8881 gtatatccca ccagcgaaac agtaggaacg tcggctttga tacgcgattg ccgcccctgc
     8941 tcacgctgct tttcaactct ttccaggcgc gactgtatct gcacgatgcg attacgcaac
     9001 aaacgacggt cggtttcgag ctgggtttca cccggaccac gcaaacctat cccgcctttc
     9061 tgtctttcaa ggtgggtcca gccacgcacc aggcgcgtag ccagatggcg cagctgcgcc
     9121 agctcaacct gcaacttacc ctcatgggta cgcgcacgtt gggcgaaaat atctaaaata
     9181 aggccggtgc ggtcgatgac tcgacactcg cacaaacgct ccaggttacg ctcttgcgcc
     9241 gggctcaggg catggtcaaa aagaacgacc gaagcacccg tcgctttgac agcttccgca
     9301 atttcaactg ctttaccttc acctacaaaa tactttgggt gcggcgcttt acggctaccg
     9361 gtaatcacct gcaatgcttc gacaccggcg gaagaaacca gagattcaaa ctcctggagg
     9421 tcttccatat ctttgtcttt cgtaaaatag atgtgtacca gtaccgcctg ctcaccagca
     9481 tcataacggt caaacaagcg tataaccctc taaatagatc agcggggaac gcaggatcgc
     9541 tggctccccg tgtaaaaaaa acagcccgaa accttattcg gtttcttcgc tgtcctgttg
     9601 cgcggaagta ttctgcgcgc tgctaccatg atggtagtta ctgctggtac cgccactggc
     9661 gttgttactg tgatgagaaa ccggacgaga cgggacaaca gtagaaatcg cgtgcttgta
     9721 aaccatctgg ctgaccgtgt ttttcaacag gatcacgaac tgatcaaaag actcgatttg
     9781 cccttgcagc ttaataccat tcaccaaata aatagaaact ggaacacgtt cccgacgcag
     9841 tgcgttcagg aacggatctt gtaaagattg ccccttagcc attctctctt ttccttatat
     9901 gcttatttgt actttgaacc tttcgattct gaaaaaattg cgcacgatac gtctcaattg
     9961 tacacattca gcctgcgata gcaccaacaa cctgtaatac ttcgtcacgc gcctgttctg
    10021 gtttttcact gtcaagccag tgaacccctt cccaaccacg cagccaggtt atctgccgct
    10081 tcgccaactg tctcgtggcg caaacacctc gataaaccat ttcatcgtat gagatttcgc
    10141 cttcaaggta agaccacatc tggcgataac ccacgcaacg aatggaaggc aagtccgtat
    10201 gcaaatctcc tcgggcaaaa agcgcccgga cttctgcttc aaaacctgaa gccaacatct
    10261 gatgaaaacg ctgctcaatg cgttgatgga gcagttcacg gctcgccggg gcgatggcga
    10321 actgatgcac ctgatacggt agagcgtctc ctgacgtttg cgtcagttcc gttaaagttt
    10381 tacccgaaat gaaaaaaact tccagtgccc gggaaagcct ttgtggatca tttggatgaa
    10441 tccttgctgc cgcaaccgga tctacctcct gaagttgacg atgcaatgac tcccaacctt
    10501 gctctgccgc ctgttgctca attctggccc gcacttccgg gtctgccgac ggtagcggcg
    10561 acaacccttc cagcaatgcc ttgaaataca acatcgtacc gcccactaac agtgggatcc
    10621 gccccgccgc ggtgatatcg gccatttccg ccagcgcatc gcggcgaaaa tcagcagccg
    10681 agtaagcctg cgacggatcg cgaatatcca gcaatcggtg cggcacggcg agtaactctt
    10741 cagcgttcgg cttcgccgtc ccgatatcca tccctttgta aataagggca gaatcaacgc
    10801 ttatcaactc tactggtaaa attttacgca gctcaatggc taacgccgtt ttaccggagg
    10861 ccgtcggccc catcaaaaaa atcgccttag gcaggctcgc cttactgata tcactcatct
    10921 ttcagggctt ttatcgccgg atgtaaatca acagattgta acagaccacc cggcggcgtt
    10981 ttcacaagtt gcggacataa ccgttccacg tccgccagca gggttatggc ctgtgccatt
    11041 gaccactgcg catgttcgct catcagattt cgtgcaatcc actgcgcaat attgccaggt
    11101 tcgaatacgg actgcttcgc caggtagcct atcagttcag gaatcaagat ttgtaaattt
    11161 tgttggcgta agggtaaagg cacggccctg atggtcacat gctgtgcatc tgactggaaa
    11221 tcaataccca attccgccag ggcagactgc gctttttcta atgccgattt ttcttcgcca
    11281 gaaactttta gccgcaacgg aataagcagc ggctgagcgc aaactggcgc ttcacccggc
    11341 gtcagttgta cctgacgtag ccaacgttct gccactggca aggctaaaag tgaaatgttg
    11401 ccgtcgcgct ccagcaacgc acagtcggaa tggacgatag tcagtacccg accaaaactc
    11461 tgactgttcg ccgcaagtgc aggttcctgc ggttccggcg cttttaattt ttgcatcggc
    11521 gcgggcgttt gcaaaagctg gcgatacact tcaccttgct gtttctggta gcctggctgc
    11581 gcattcggcc aaggggcagc cggacgactg cctgatgctg gcgcaggagt gtagcgcgga
    11641 gctaccggct cacgagctgc cggttctgca aagtgattgc gccccgccgc cacgcggttt
    11701 tccggaatgg aacgcggtgc aggttggggt tcatcgtcca gcggtagcgg cgtttccagt
    11761 tgctgttgta gcacgctcag cacgccctga tagataaaat catgcaccag acgcgactga
    11821 tggaaacgca cttcgtgttt ggcggggtgc acgttgacgt ccacctgatg cggatcgatc
    11881 tccagataca gcacaaatgc cggttgctga tcggccccca gtttgtcttc gcaggcctgg
    11941 cggatcgcgt gattgatcag gcgatcgcgc atcatgcgac cgttcacgta gcaatactga
    12001 atttctgcca gtgcgggcgt ggtgtgattt ggatcggcca cccagccgcg tagcgtgaga
    12061 tcgccgtgtt gccattcaat cgccagcgct tgttcaagaa aagcagtgcc gcaaatcgcg
    12121 cctaagcgcc gttctttttg cccgccttcc ggcactgcgc ggtactgacg cacaatttta
    12181 ccgttatgcg acaggttgat cgtgacgtcg aaacgcgcca gcgcaatgcg gcggatgatc
    12241 tcatcaatgt ggttaaattc ggttttctcg gtgcgcagga atttgcgccg cgccggggtg
    12301 ttgtagaaca gatccagcac ctccagcgtc gtccccacag gatgcgccgc cggttttacc
    12361 gtcacgttca tatcgcgccc ttcggcatag gcctgccagg cttcctgctg ttctgcggtg
    12421 cgtgaagtga gcgtcaggcg ggaaaccgaa ctgatactcg ccagcgcctc accgcgaaag
    12481 cccaggctga taatggcttc gagatcgtcc agagaggcga ttttactggt ggcatgacga
    12541 gccagcgcca gcgccagctc atcttttttg ataccgcagc cgttatcacg aatgcggata
    12601 agtttcgccc caccgcgttc gatatcaata tcgatacgcg tcgcacctgc atcgaggctg
    12661 ttttccacca gttctttgac taccgacgca ggtcgctcga ccacctcacc tgcggcaatc
    12721 tggttcgcca gttgtggcgg taagacctga attggcatca atcgtcctta gtttggcagc
    12781 gtgcgatctg gcgtcgtcac cgtactggcc gtttgtgccg ttgcaccctg cggcgcagat
    12841 tgcatcggat gcgcaaggaa ataattgcgc aggcctttgt aaatggcttc tgccagctgt
    12901 tgttggtaat cgtcgctcgc cagcaaacgt tcttcgctgt tgttgctgat aaaaccggtt
    12961 tcgaccagta ctgacgggat atccggcgaa cgcagaacgc cgagactcgc gtgttctggt
    13021 cggcgtttat gtatttcgcc aatgcgttgc aactgactga tcatactggt cgctacatca
    13081 taccctaccc gctgggaatg accgaactgt aaatccagca ccgcctggct taaataggga
    13141 tcagactgac tgttcgccag cacatcgccc gccccaccca gcagctccga atgtttctcg
    13201 tgctgctcca gccagctggc catttcgctg ttggcgcgac ggttagagag cacccatacg
    13261 gaagcgccag tcgcactgcg gttcggtgcg gcatcagcgt gaatagacac gaggaaatta
    13321 gcgttttgct tacgtgccac atcgctgcgc cccatcaccg aaataaagta atccccgtca
    13381 cgggttaaaa cgcctttaaa catcggatcg tcattgagca aagtacgcaa tttacgcgcg
    13441 atggcgatgg tgacattttt ctcccgcgta ccaccggggc cgatagcgcc agggtcctga
    13501 ccgccgtgtc cggcatcaat agcgatgata attttatcgc cagtgttagc cgtcgcgcgc
    13561 gctgtcggac gcgttaccgt attactgctg ataacacccg tagtgcggtt actttccgtt
    13621 ttaaacggat tgcgcgccgg ttcgctgacg cgcggtgcga caaccgcagg cgtttcaacg
    13681 cgtttcgcaa ccacgggcgg cggaggaggc ggtggcggca catcggcgtt aatcgtaaag
    13741 acgacagtgt aattgctgcc attctgccgc ttcaccgctt cggttttacc attttcggta
    13801 agatcgacca ccagccgtag cgtttgtgca tctttaggcg ttccagagcg aatcgccttc
    13861 accagattat tgccgctgaa caacaacggc agtccctgaa tcacgcccgt ttgtttgata
    13921 tcgagcgcca cggtgcgttt gctttgatgg ctaaacgcat aatcaggatc gccaataaaa
    13981 ctcaacgtta tccgcgcctg ttgattaccg ttagaaacct gaatatcaga gagcgtcgcg
    14041 gcacccaccg gcgtgcacag cagcagcagc gtcgctacca accaatttct gatgcgatac
    14101 atcatcccgc cacctttcaa aggttaaccg gctaaacgcg ccagcaacaa ttcacccgca
    14161 gaggaaaccg cactcacgcg cgcctcacgg ccttgtgcct gataatcaat gtgtatttcg
    14221 acatccgggt caggaagaac acctgtacct tgttgtggcc actccaccag gcagatggca
    14281 tcgttggcaa aataatcgcg gatccccata aactccagct cctcgggatc ggcaaggcgg
    14341 tacaaatcaa agtgataaac cattaaattg tcgagcgtat agggttcgac cagcgtataa
    14401 gtggggcttt tgacattacc ctgatgaccc agagcttgta aaaagccccg gctaaaggtg
    14461 gtcttacctg cgcctaaatc gccatacaga tagattacgg ttgcgccatc gcaggctttc
    14521 gctacccgct cgcccaggtc taatgttgcc tgctcatcag ggagcggaat tactcgattc
    14581 atcatggttt ttatcagtca cttccgggtt aacaatacgc tgtagcgtgg aaaagagatc
    14641 ggttgccagc atcccgcgcg ttccaaaacg cgccgccagt acgtcagctg ccgcaccgtg
    14701 cgcgacacag cccgcacagg cggcatcata cggcgacagt ttttgcccaa gcaatgcgcc
    14761 aataatacca gagagcacat cgcccatgcc gcagctcgcc atgcctgcat ttccggcatc
    14821 aataatgcct aaagcgtcag gatgggcggc gaccacggtt ccggcacctt tcagcaccgc
    14881 tacgccgcca taacgttgta ccagacgttt ggcgcaatgt aagcggtcac tttcaatttc
    14941 agcgacggaa cagcctaaca accgtgcggc ctcgccagga tgcggcgtga tcacgcgatt
    15001 gtgacgctta tcgggattga ttgccagcag gttcaatgca tcggcatccc acaacatcgg
    15061 tttgcgaaaa ttctcaactt tttgcagtgc ttttttcccc cactcttgct ggcccagacc
    15121 gggaccaatc accaccacat cggcccattc caggctttcg gtaagagagt ccatcgtcag
    15181 ttcatgcacc atcaattccg gtcgtgcagt cagcagcggc gcaatgtttt cactgcgggt
    15241 cagtactcgg actaaaccag caccagcacg cagcgccgct tcccccgtca tacgaatagc
    15301 ccccgccgtg ccgtgatcgc caccgataat taccagccgc ccgtgatcgc ctttatgcga
    15361 agtcgggcga cgcggtttta gccagtgaga aagttgttct gctgaaaacc gctgaatttt
    15421 cgtctcctga cctgccagcc aactatccag ccccagtgag tcaaaatgca gttgtccggt
    15481 aacatcccgc gcttttccag tgagcaagcc tggtttcagc gcaataaaag tgatggtgtg
    15541 atcggcgttg atcaccgcgc ctggcgtagc gccagtttca gccagcaggc cggaagggat
    15601 atcaaccgcc acaatcggcg caggatggga attagcgtgg tcgattaact ggctaatgga
    15661 ttcgcggggc gcttgccgca aaccggtacc gagcagcgca tcaacaatca gatctaccga
    15721 ttcgggccag acaatattcg aagcatggat ctcgccaccc gcgtttaacc atgcttcgcg
    15781 tgccagcgcg gcctcttccg gcaacggttt gtcgctctcc tgggcaaaca acgtgacctc
    15841 aatgccgacc gctttggcca gtcgcgcgac cacgtagcca tcgccgccgt tattaccatg
    15901 accgcacagc accagccagt ggcgggcgtc aggatacgcc gaacgacaca cctggaatgc
    15961 ggcctcgcca gcgcgaagca tcagctcata gagtgtgagc cccagcacat ctgccgcctc
    16021 gcgttctccg cggcggatat cgtcggcgta ccagacggtg tgtggtatac ttacggggtt
    16081 tttcttcatt gtatggtccg tcatgtcaga gcccctcgat ctcaatcagt tagcgcaaaa
    16141 aattaaacag tgggggctgg aactgggctt tcagcaggta ggtattaccg ataccgatct
    16201 cagcgagtcc gagcccaaac tgcaagcatg gctggacaaa caataccacg gcgaaatgga
    16261 ctggatggca cgtcacggta tgctgcgcgc tcgccctcat gagttattgc ccggtacgct
    16321 gcgcgtgatc agcgtgcgga tgaattacct tcctgctaac gccgcatttg ccagcacgct
    16381 gaaaaacccc aaactcggct atgttagccg ttatgcgcag ggccgtgact atcacaaact
    16441 tctgcgcaac cgactcaaaa agctgggcga gatgattcag caacattgtg tttcgctgaa
    16501 ttttagaccg tttgtcgatt ctgcgcctat tctcgagcgc ccgttagctg aaaaagctgg
    16561 gctcggctgg acaggtaagc actcacttat cctcaatcgc gaggccggtt cgttcttctt
    16621 tttaggcgaa ttgctggtcg atattccgct gcccgtggat caaccagtcg aggaaggatg
    16681 cggtaaatgc gtggcctgta tgacgatttg cccgaccggt gccatcgtcg agccatatac
    16741 cgtcgatgct cgccgctgta tctcttatct caccatcgaa cttgaagggg cgatcccgga
    16801 agagttgcga ccgttaatgg gaaaccgtat ttacggttgc gatgactgcc agcttatctg
    16861 cccgtggaat cgctattcac aactcaccac agaagaggat ttcagcccgc gtaagccgct
    16921 acacgcaccg gaactcattg agttattcgc ctggagcgaa gagaagtttt taaaagtcac
    16981 ggaaggatcg gcgattcgtc gtattggtca cctgcgttgg ctgcgtaata tcgccgtagc
    17041 attaggcaat gccccttggg atgaaacgat tttgacagcg ctggaaagtc gtaaaggtga
    17101 gcacccactt ctcgatgagc acatagcgtg ggcgattgcg cagcaaatag agagacgaaa
    17161 tgcgtgcata gtcgaagtgc aattgccgaa aaaacagcgt ctggttcggg tgattgaaaa
    17221 agggttaccg cgtgacgcct gattcatcca cagcttgtga ataaaaataa aaacgcattg
    17281 caattcaaga cgaataaaat cgtcaagtga tcgactcgac aaaacggaat cttaattttt
    17341 aacttatcta tcaataggtt aaaaaaatac tattcaccgt gcgaagtttc tttgaaatta
    17401 agattacagc ctgaggctgt ggataactct gtttacaaga gtttgtcaga gacaacgaaa
    17461 accagcaata acgcatcgct gtggatattt tattgagaga agaatttgga gcgggaaacg
    17521 agactcgaac tcgcgacccc gaccttggca aggtcgtgct ctaccaactg agctattccc
    17581 gcttgggtgg tctgtgcttt gcagcacttt tcaaactttg gagcgggaaa cgagactcga
    17641 actcgcgacc ccgaccttgg caaggtcgtg ctctaccaac tgagctattc ccgcgtacta
    17701 cttaattttg ctttcgtaat tttcgcattt ctgcgtcgtt acgggaggcg cattatacga
    17761 gaaatctttc cctctgcaac cccccaaaaa agtttttttt gcgtttttat ctcaagtgct
    17821 gaaattatca gcaagacgtt caatttagcg tcaaaatcac gccgccgcaa gtggattccg
    17881 gcgcttacgt gaccaggaaa aattttacag cttgataaaa tgctcgcggt agtaagccag
    17941 ctccgccacc gattcacgga tatcatccat cgcctgatgc gtcccctgct tggtaaaacc
    18001 atccagaatt tccggcttcc agcggcgcgc cagctctttc agggtgctga catcgagata
    18061 acggtagtgg aagtaggctt ccagctccgg catgtattta aacaggaaac gacggtcctg
    18121 tccgatgctg ttaccgcaaa tcggcgattt tcccgcaggc acccactgtt ttaagaattc
    18181 gagcgttgcc agttcagctt cccgatcgcc catcgtgctc gctttcacgc gctctaccag
    18241 cccgctggcg gtatgggtgc gcacgttcca gtcatccatc agcgccagct gttcatcgga
    18301 ctgatgtact gcaatggtcg gcccttctgc cagaatattc agattggcat cggtcaccag
    18361 cgtggcaatc tcaataatgc gatcgcgctc gggatccaga ccagtcatct caagatcgat
    18421 ccaaatcagg ttgttttcat tggcactcat gctattttcc acccattcac agtgactata
    18481 ttgatccaca attgcgtgta tcatagatgt tttgcccatc aggggcgacc aggagtctgt
    18541 acgattgagt aaaaataaac tctccaaagg ccagcagcgc cgcgtgaacg ccaatcacca
    18601 gcgtcgtctt aaaacgtcta aggagaagcc cgactacgac gacaatctgt ttggcgagcc
    18661 tgatgaaggt atcgtcatca gccgctttgg tatgcacgct gatgtggaat ccgccgatgg
    18721 cgacgttcac cgctgcaata ttcgccgtac catccgttcg ctggtgaccg gcgaccgtgt
    18781 agtctggcgt ccgggtaaac cggcggcgga aggcgtaaat gtcaaaggga tcgtggaagc
    18841 ggtgcatgag cgtacctcgg tgttgacgcg tccggatttc tacgacggcg taaaacctat
    18901 tgccgccaac atcgaccaga ttgtcattgt ctccgccatt ttgccggagc tgtcactcaa
    18961 tattatcgac cgttacctgg tggcctgcga aaccttgcag attgagccga ttattgtgct
    19021 caacaagata gacctgctgg acgacgaagg catggcgttc gtcaacgagc agatggatat
    19081 ctaccgcaat atcggttatc gcgtattgat ggtttccagc catactcagg atgggctaaa
    19141 accgctggaa gaggcgttga ccgggcgcat cagcattttt gccgggcagt ctggcgtcgg
    19201 caaatccagc ctgctgaatg cgttgctggg gctgcaaaaa gagatcctga ccaacgatgt
    19261 ctctgacaac tcggggctcg gtcagcacac cacgaccgcc gctcggctgt atcacttccc
    19321 gcacggcggt gatgtgattg attcccctgg tgtgcgtgag ttcggcctct ggcacctgga
    19381 gccggaacaa atcactcagg gctttgtcga attccatgac tatttaggtc tgtgtaaata
    19441 tcgcgattgc aaacacgata ccgatccggg ctgcgctatc cgggaagcgg ttgaggaagg
    19501 gaaaatcgcg gaaacccgtt tcgaaaacta tcaccgtatt ctggaaagca tggcgcaggt
    19561 aaaaacgcgt aaaaactttt ctgatacgga tgactgacaa ttaagctaac cgtcgttaga
    19621 atcgtcccct ttttttcagg ctccggcatg ttggccggat caggaacgac aaaacaatgg
    19681 cctggaggct accttgttaa attcatttaa actttcgcta cagtacattc tgccgaaact
    19741 atggcttact cgcctggcgg gttggggcgc aagcaagcgg gcaggatggc tgacaaaact
    19801 ggttatcgat ctgttcgtta aatactacaa ggtcgacatg aaagaggcgc aaaagccgga
    19861 caccgccagc taccgcacct ttaacgaatt ctttgtccgt ccgctgcgtg acgaagtacg
    19921 cccaatcgat accgatccga atgtactggt catgcctgcc gatggcgtta tcagccagtt
    19981 gggtaaaatc gaagaagata aaatcctgca agccaaaggc cacaactaca gcctcgaagc
    20041 cctgctggca ggcaactatc tgatggcgga cctgttccgc aacggtacgt ttgtgaccac
    20101 ttacctctcc ccgcgtgact accatcgcgt acacatgccg tgcaacggta ttctgcgtga
    20161 gatgatctac gtgccgggcg atctcttctc cgttaaccat ctcaccgctc agaacgtgcc
    20221 gaatctgttt gcccgtaacg aacgcgtgat ttgccttttc gataccgaat ttggcccaat
    20281 ggcgcagatt ctggtcggag cgacgattgt tggcagcatt gagacggtct gggcgggcac
    20341 cattacgccg ccgcgcgaag gtatcatcaa gcgctggacc tggcctgccg gggaaaacga
    20401 cggttctgtg gcactgctga aaggccagga aatgggtcgc tttaaactcg gttccaccgt
    20461 tatcaacctg tttgcaccgg gtaaagtgaa tctggttgag caactggaaa gcctgtctgt
    20521 cacgaaaatt ggccagccgc tggcagtatc taccgaaacc tttgttacgc cagacgctga
    20581 acccgcccca cttcctgctg aagagatcga agcagaacac gacgccagcc cattggttga
    20641 cgataaaaaa gaccaggtct aatccatcaa aggaaacgct gacgtgcgcc tgattatcac
    20701 ttttctgatg gcctggtgcc tcagttgggg ggcgtacgcc gcgacggccc ccgatagcaa
    20761 acaaatcact caggaactgg agcaggcaaa agcggcgaaa cccgcacagc cggaagtcgt
    20821 agaggcgctc cagtctgcct taaatgcgct tgaggaacga aaaggttccc ttgagcgcat
    20881 caaacaatat cagcaagtta tcgataatta tccgaaactc tccgctactc tgcgcgcaca
    20941 attaaacaac atgcgtgacg agccgcgcag cgtgtcgccg ggaatgtcta ccgacgcgct
    21001 gaatcaggaa attctccagg tcagcagcca gttgctggat aaaagccgtc aggcccagca
    21061 agagcaggag cgcacccgcg agattgccga ttcgctgaat caactgccgc aacagcaaac
    21121 cgacgcccgc cgtcagttaa atgagatcga gcgccgcctg ggaacgctta ccggcaatac
    21181 tccgctcaat caggcacaaa atttcgcgtt gcagtctgac tctgcaagtc ttaaggcgct
    21241 cgttgatgaa ctggagctgg cgcagctgtc tgccaataac cgccaggaat tagcgcgctt
    21301 acgctcagag ctggcggaaa aagagagcca gcaactggat gcgtatttgc aggccttgcg
    21361 taatcaatta aacagccaac gtcagcttga ggcggagcgg gcgctggaaa gtaccgaatt
    21421 gctggcagaa aacagcgccg atttgccgaa agatatcgtc gcgcaattca aaattaaccg
    21481 cgaactatcg gcggctttga atcaacaggc gcagcggatg gatctcgttg cctcgcaaca
    21541 gcgtcaggct gccagccaga cgttacaggt ccggctggcg ttgaatacgc tgcgtgaaca
    21601 gtcgcaatgg ctgggatcgt ccaatctgct cggcgaagcg ctgcgggcgc aggtggcacg
    21661 gctgccagaa atgccaaaac cacaacagct tgataccgaa atggcgcagt tgcgtgtgca
    21721 acggttacgt tatgaggatc tgcttaataa acagccgctg ctacggcaaa tccatcaggc
    21781 cgacggtcag ccgctgaccg ccgagcaaaa ccgtattctg gaagcacaac tgcgcactca
    21841 gcgtgagttg ctgaactcat tgttgcaggg tggcgacacg ctactattgg aactgaccaa
    21901 gctgaaagtc tccaacgggc aactggagga tgcgctgaaa gaggtgaacg aagcaacgca
    21961 ccgctatctg ttctggacct ctgacgtgcg cccgatgacc atcgcctggc cgctggaaat
    22021 cgcccaggat ctgcgtcgtc tcatttcgct ggacaccttc agtcagttgg gcaaagccag
    22081 tgtgatgatg ctgaccagca aagagacaat tttgccgctg tttggcgcgt tgattctggt
    22141 cggttgcagt atttactcgc gccgctattt cacccgtttt cttgaacgtt cggcggcgaa
    22201 agttggcaaa gtgactcagg atcacttctg gctgacgttg cgcactcttt tctggtcgat
    22261 tctcgtcgcg tcaccgttac cggtgctgtg gatgacgctg ggttacggct tgcgcgaggc
    22321 gtggccttat ccgctggcgg tcgcgattgg cgatggtgta acggctaccg tgccgctgct
    22381 gtgggtagtg atgatttgcg ccacctttgc ccgcccgaac ggcttgttta tcgctcattt
    22441 tggctggccg cgcgaacgtg tttcccgtgg gatgcgctac tacctgatga gcatcgggct
    22501 tattgtgccg ctgattatgg cgctgatgat gttcgataac ctcgacgacc gtgaattctc
    22561 cggttcgctg ggacggcttt gctttatcct catttgcggt gcgctggcgg tggtcaccct
    22621 cagcctgaaa aaggccggga tcccactgta tctcaacaaa gagggcagcg gcgacaacat
    22681 taccaaccat atgctgtgga acatgatgat tggcgcgccg ttggttgcca ttctggcgtc
    22741 ggctgtgggt tatctggcaa cggcacaggc gctgttagcg aggcttgaaa cctcggttgc
    22801 catctggttc ctgctactgg tggtttatca cgttatccgc cgctggatgc tgatccagcg
    22861 ccgcaggctg gcgtttgacc gggcgaagca tcgccgggca gagatgttag cgcaacgtgc
    22921 gcgtggcgaa gaggaagcgc atcatcacag tagcccggaa ggagcaattg aagtcgatga
    22981 aagcgaagtc gatctcgatg ccatcagtgc gcaatccttg cggctggtgc gctcaatttt
    23041 gatgttgatc gccctgcttt ctgtcattgt gctgtggtca gaaatccatt ccgctttcgg
    23101 cttcctcgaa aatatttcgc tgtgggatgt cacctccacg gtacaaggcg tagaaagtct
    23161 ggagccaatt accctcggtg cggtgctgat tgccattctg gtgtttatca tcaccacgca
    23221 gctggtgcgc aacctgcccg cgctgctgga actggcgatt ttgcagcacc tggatttaac
    23281 gccgggtaca ggctacgcca tcaccaccat caccaaatat ctgctgatgc tgattggcgg
    23341 gctggtcggc ttctcgatga ttggtattga gtggtcgaaa ttgcagtggc tggtcgccgc
    23401 gctcggtgtt ggtctcggtt ttggtttgca ggaaattttc gccaacttta tctctggtct
    23461 gattatcctg ttcgaaaaac cgattcgcat tggcgatacg gtgacaattc gcgatctcac
    23521 cggtagcgtg acgaaaatta acacccgcgc caccaccatc agcgactggg accgtaaaga
    23581 gataatcgtg ccgaacaagg cgtttattac cgagcagttt atcaactggt cgctctctga
    23641 ctcggttacg cgcgtagtgt tgacgattcc ggcccctgct gatgccaaca gtgaagaagt
    23701 gacggaaatc ctgctcaccg cagcgcgtcg ctgctcgctg gtgatcgaca acccggcacc
    23761 ggaagtcttc ctggtggatc tgcaacaagg gattcagatt ttcgagctgc gtatttatgc
    23821 cgctgagatg ggtcaccgta tgccgctacg ccatgagatc caccagctga ttctggctgg
    23881 cttccatgcc cacggtatcg atatgccatt cccgcccttc cagatgcgtc tggaaagcct
    23941 caacggtaaa caaacgggga gaacgctgac gtctgcgggc aaaggtcgtc aggcgggaag
    24001 tttgtaatgc atgaagctgc caaatgatgt caacgtggct catttagcag cttaacatca
    24061 tcttcagtta tcaccggccc tggagagtat catccatacg cattacttcc tgacaactca
    24121 tcgccggaga gacgatgagt tgcaggattt catatgatca gtcgagagct acctcaggtt
    24181 tattcgccat gcgactgcaa tagttctggt aaatcgccat cgctaacagc gagaagaaga
    24241 cagggccgcc aatcatccac aatgtgctgt cccagtctcc gacttcaacc acaggcggaa
    24301 taatggtgaa gacgttcgca aatgtcacca ccagtacgac aaccaccgtc gcaatcattg
    24361 ccgacatacg cgttttgaaa atcacaaatg gtctgtcgag atcctgacgt gctttaaaga
    24421 atgggaaagc cagcgcgagg aacaggtaag gaagc
//
LOCUS       DAJVUN010000049        24163 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.049, whole genome shotgun sequence.
ACCESSION   DAJVUN010000049 DAJVUN010000000
VERSION     DAJVUN010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24163
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.049"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(120..1130)
                     /locus_tag="OQQ76_001640"
     CDS             complement(120..1130)
                     /locus_tag="OQQ76_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HCS1968183.1"
                     /translation="MDKITQVLFSDIGKVTTQYVEVPHQELKPHEVRIAPVFYGICGS
                     DLHVLKGGHPFAKPPVVPGHEIAARVTEVGSDVKNVQPGDHVVVDPIMACMECRACKA
                     GRFNLCEPPQVASFRAPGFARSQHIVPARNCHVAPASLPLKVLAFAEPAACARHCVNR
                     MPKASLESVLVIGAGTIGLSIVQALRIMGAGKITVIEPDAAKRALALKLGAAEVWAPG
                     ELAADVRFTGAIDVVAAQATLNDACTRVYAGGTVVCMGVPSGPREIPLPMMQRFERDL
                     LNSGMYIPEDFDAVIEWLADGRFDTSELVTDLFAIEDAAAAFERAQQNDSIKVMLQFA
                     PE"
     gene            complement(1163..2050)
                     /locus_tag="OQQ76_001641"
     CDS             complement(1163..2050)
                     /locus_tag="OQQ76_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000094541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS1968184.1"
                     /translation="MSSHFTPFTLKDISRPGGGFAMLAVDQREAMRLMFAAAGQPKPI
                     ADSVLTDFKVAATRILSPYASAVLADKQFCLEQIVEQGAVANSCGLIVAADLFIPGNG
                     IPVDSVEIDMSVDPHKAREMGAKAMKLLVLWREDEPAEERLAMVDKFVRRCRSAGLVS
                     IIEPVVRPPRRGWDFDRESAIVAAAAELGGTEADLYKAEMPLGGKGDEKTLLAACQQL
                     NDQMKMPWVILSSGVDADIFGRAVSIAMKGGASGFLAGRAVWASVVGAQDPQTMLRDV
                     SVPRLQRLAEIVDEGIAQR"
     gene            complement(2075..2953)
                     /gene="yihU"
                     /locus_tag="OQQ76_001642"
                     /pseudo
     CDS             complement(2075..2953)
                     /gene="yihU"
                     /locus_tag="OQQ76_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318159.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
     gene            3126..4022
                     /locus_tag="OQQ76_001643"
     CDS             3126..4022
                     /locus_tag="OQQ76_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1968185.1"
                     /translation="MTRIACVGITVQDRIYSLPTLPEGGGKYQANHYLEIGGGPAATA
                     AVAIAKLGVEVDFIGRVGDDSCGNTLLAELEGWGVNTAFCRRYPNARSSQSAILVDQH
                     GERIIVNYPSPDLGTDAEWLEAIDFSRYDLILADVRWHSGTEKAFSLACLAGVTTLLD
                     ADMTPQDISPLVALADHAVFSTPGLKRMTGLQSPEEGLFQATTQTAGKVYVTLGSEGS
                     LWIEDGHLCQQEAFSVNVVDTTGAGDVFHGALAVALAEKMPTKEAIRFASAVAAMKCT
                     QPGGRAGIPNREQTESFLSLYA"
     gene            4062..4850
                     /locus_tag="OQQ76_001644"
     CDS             4062..4850
                     /locus_tag="OQQ76_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1968186.1"
                     /translation="MSIIEVTGNPRHDQLVHLIAERGYMNIEELAQLLDVSTQTVRRD
                     IRKLSEQGLITRHHGGAGRVSSVMNTAFEQRELSLTAEKRAIAEAVADYLPERCTVFI
                     TIGTTVEAVARALLNRRDLRIITNSLRVAQILYKNQDIEVMVPGGTLRAHNGGIIGPG
                     AVDFIEGFRADYLITSIGAIEHDGTLLEFDVNEALVARTMIKHARNTLLVADHTKFAA
                     SAAVSIGNARNVRAFFTDAPPPNSFCQLLSEENVELVVAEQEVS"
     gene            complement(4956..6779)
                     /gene="typA"
                     /locus_tag="OQQ76_001645"
     CDS             complement(4956..6779)
                     /gene="typA"
                     /locus_tag="OQQ76_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000570679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent GTPase TypA"
                     /protein_id="HCS1968187.1"
                     /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMD
                     SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF
                     DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
                     PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYV
                     GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI
                     TGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR
                     LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
                     DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
                     FRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG
                     KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLE
                     QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDY"
     gene            7152..8561
                     /gene="glnA"
                     /locus_tag="OQQ76_001646"
     CDS             7152..8561
                     /gene="glnA"
                     /locus_tag="OQQ76_001646"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HCS1968188.1"
                     /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF
                     EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD
                     RDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWN
                     SSTQYEGGNKGHRPAVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG
                     QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLS
                     KNGVNLFAGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
                     YSARNRSASIRIPVVSSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA
                     MDKNLYDLPPEEAKEIPQVAGSLEEALNELDLDREFLKAGGVFTDEAIDAYIALRREE
                     DDRVRMTPHPVEFELYYSV"
     gene            8735..9784
                     /gene="glnL"
                     /locus_tag="OQQ76_001647"
     CDS             8735..9784
                     /gene="glnL"
                     /locus_tag="OQQ76_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HCS1968189.1"
                     /translation="MATGTQPDAGQILNSLINSILLIDDNLEIHYANPAAQQLLAQSS
                     RKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDG
                     MILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGCLRGAAQLLSKALP
                     DPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNV
                     RLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGER
                     YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTS
                     WPGHTEFSVYLPIRK"
     gene            9796..11205
                     /gene="glnG"
                     /locus_tag="OQQ76_001648"
     CDS             9796..11205
                     /gene="glnG"
                     /locus_tag="OQQ76_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HCS1968190.1"
                     /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA
                     SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
                     PKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
                     SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT
                     GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI
                     IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG
                     VEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE
                     STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR
                     LLGWGRNTLTRKLKELGME"
     gene            11316..11426
                     /locus_tag="OQQ76_001649"
     CDS             11316..11426
                     /locus_tag="OQQ76_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YshB family small membrane protein"
                     /protein_id="HCS1968191.1"
                     /translation="MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS"
     gene            complement(11616..12989)
                     /gene="hemN"
                     /locus_tag="OQQ76_001650"
     CDS             complement(11616..12989)
                     /gene="hemN"
                     /locus_tag="OQQ76_001650"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HCS1968192.1"
                     /translation="MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQA
                     VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG
                     RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLR
                     AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT
                     PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF
                     LTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD
                     CYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQW
                     DLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARM
                     QQFSRVI"
     gene            complement(13178..13687)
                     /gene="yihI"
                     /locus_tag="OQQ76_001651"
     CDS             complement(13178..13687)
                     /gene="yihI"
                     /locus_tag="OQQ76_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HCS1968193.1"
                     /translation="MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGS
                     RAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELL
                     ETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQE
                     DMMRLLRGN"
     gene            14246..14878
                     /locus_tag="OQQ76_001652"
     CDS             14246..14878
                     /locus_tag="OQQ76_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HCS1968194.1"
                     /translation="MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALN
                     TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY
                     LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN
                     MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE"
     gene            complement(15260..18046)
                     /gene="polA"
                     /locus_tag="OQQ76_001653"
     CDS             complement(15260..18046)
                     /gene="polA"
                     /locus_tag="OQQ76_001653"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HCS1968195.1"
                     /translation="MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN
                     MLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM
                     GLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL
                     GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP
                     EKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELL
                     GLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTIL
                     DEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA
                     PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN
                     SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL
                     HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL
                     EKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP
                     KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR
                     NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE
                     VFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGV
                     LEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADII
                     KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPL
                     LVEVGSGENWDQAH"
     gene            18410..19342
                     /locus_tag="OQQ76_001654"
     CDS             18410..19342
                     /locus_tag="OQQ76_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HCS1968196.1"
                     /translation="MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVK
                     LLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPLLQWEVHGLEGLSKKNWYLLICN
                     HRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWALDMPFMKRYSRAYLLRH
                     PERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIA
                     MALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYIN
                     DKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQDK"
     gene            complement(19383..20813)
                     /locus_tag="OQQ76_001655"
     CDS             complement(19383..20813)
                     /locus_tag="OQQ76_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312811.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HCS1968197.1"
                     /translation="MIRKSATGVIVALAVIWGGGTWYTGTQIQPGVEKFIKDFNDAKK
                     KGEHAYDMTLSYKNFDKGFFNSHFQMQISFDNGAPDLNIKPGQKVAFDVDVEHGPLPI
                     TMLMHGNVIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAP
                     AEYGKFSFGEGQFTSNGDGSSLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLTRLE
                     EKKFPVGESESKFNQVNIINQGEDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLT
                     KGNQQLGSGEWSLIAESIDPSAVRQFIIQYNIAMQKQLAAHPELANDEVALQEVNAAL
                     FKEYLPLLQQSEPTIKQPVRWKNALGELNANLDISIADPAKSSSSTNKDIKSLNFDVK
                     LPLNVVTETAKQLNLSEGMDAEKAQKRADKQISGMMTLGQMFQLITIDNNTAPLQLRY
                     TPGKVVFNGQEMSEEEFMSRAGRFVH"
     gene            complement(20968..21594)
                     /gene="dsbA"
                     /locus_tag="OQQ76_001656"
     CDS             complement(20968..21594)
                     /gene="dsbA"
                     /locus_tag="OQQ76_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA"
                     /protein_id="HCS1968198.1"
                     /translation="MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEF
                     FSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG
                     VEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKA
                     AADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK"
     gene            complement(21611..22597)
                     /gene="srkA"
                     /locus_tag="OQQ76_001657"
     CDS             complement(21611..22597)
                     /gene="srkA"
                     /locus_tag="OQQ76_001657"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response kinase SrkA"
                     /protein_id="HCS1968199.1"
                     /translation="MNNSAFTFQTLHPDTIMDALFEQGIRVDSGLTPLNSYENRVYQF
                     QDEDRRRIVVKFYRPERWTADQILGEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFY
                     FAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF
                     EDATLIPSGLKAAFLKATDELIAAVTAHWREDSTVLRLHGDCHAGNILWRDGPMFVDL
                     DDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY
                     YLAWLMRRWADPAFPKHFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY"
     gene            complement(22674..22943)
                     /locus_tag="OQQ76_001658"
     CDS             complement(22674..22943)
                     /locus_tag="OQQ76_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HCS1968200.1"
                     /translation="MKCKRLNEVIEFLQPAWQKEPDLNLLQFLQKLAKESGFDGELAD
                     LTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE"
     gene            23013..23597
                     /gene="mobA"
                     /locus_tag="OQQ76_001659"
     CDS             23013..23597
                     /gene="mobA"
                     /locus_tag="OQQ76_001659"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HCS1968201.1"
                     /translation="MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALM
                     TQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT
                     PYIPPDLAARLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAF
                     MRLAGGHAVDFSDHKDAFVNVNTPEELARWQEKR"
     gene            23579..24106
                     /gene="mobB"
                     /locus_tag="OQQ76_001660"
     CDS             23579..24106
                     /gene="mobB"
                     /locus_tag="OQQ76_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418293.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HCS1968202.1"
                     /translation="MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT
                     HHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKL
                     DLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVE
                     GLADFVVEWMQKQNG"
BASE COUNT         5892 a         6154 c         5903 g         6214 t
ORIGIN      
        1 tcctgtggcc gactaattga ataagttgca ggactggtga tttgactcat cgcagtgtcc
       61 tttttaattg ttgtagggtg gcgctgacgt gacgcagcgc cagacagaga tttagaaaat
      121 cattccggcg caaattgcag catgaccttt atggagtcat tttgctgcgc gcgttcaaat
      181 gccgccgctg catcctcaat ggcaaataaa tcggtaacca gttcactggt atcaaaccgc
      241 ccatccgcca gccattcgat aacagcatcg aaatcttcag ggatgtacat gccagagttg
      301 agcaagtcac gctcgaaacg ttgcatcatc ggtaatggta tttcacgcgg cccacttggt
      361 acgcccatgc acacgacggt gcctccggca tatacacggg tacatgcatc gttaagcgtg
      421 gcctgcgctg caacgacatc aatcgccccc gtaaatcgca catctgcggc cagctcacct
      481 ggtgcccaaa cttctgctgc gcccagcttt aacgccagcg cgcgtttggc agcgtcaggt
      541 tcaatcacgg taatcttacc tgcccccata atgcgcagtg cctgcacgat ggataagcct
      601 atcgttccgg caccaattac cagtacgctt tccagagaag ctttcggcat tcggttaacg
      661 cagtgacggg cacaagccgc cggttcggca aaggccaaca cttttagcgg taaagaggct
      721 ggtgcgacat ggcaattacg cgcaggaaca atgtgttgtg agcgagcaaa gcccggtgcg
      781 cgaaaactag caacctgcgg tggttcacaa agattaaaac gtcctgcttt gcaggctcgg
      841 cattccatgc aagccatgat gggatcgacc acaacatgat cgcccggctg tacattttta
      901 acgtcgctgc caacttccgt aacgcgcgct gcaatttcat gaccggggac gacaggtggt
      961 ttggcaaacg gatgaccgcc tttcagaaca tgcagatccg aaccgcatat cccatagaac
     1021 acaggcgcaa tccgcacttc gtgcggttta agttcctggt gtggtacttc aacatattga
     1081 gtggtgactt tcccaatatc tgaaaataaa acctgggtaa ttttatccat tgttattctc
     1141 cagaatcgat atccataggg gattagcgtt gcgcgatacc ttcatcgaca atttctgcca
     1201 accgttgtaa acgaggaaca gagacatcgc gcagcatagt ttgtggatct tgtgcaccaa
     1261 caaccgacgc ccaaaccgct cgtccagcca ggaagcccga cgcaccacct ttcatggcaa
     1321 tacttactgc acggccaaaa atatcggcat caacgccaga agaaagaatt acccacggca
     1381 tcttcatctg atcgttaagt tgctgacagg cggcaagtaa ggttttttca tcgcctttgc
     1441 cccctaatgg catctcggct ttgtaaagat cagcctctgt tccaccaagc tctgcggcgg
     1501 cggcaacaat ggcgctttca cgatcaaagt cccaaccgcg acgaggtgga cgcaccacag
     1561 gttcaataat gctcaccagc ccggcactac ggcagcgacg aacaaattta tcaaccattg
     1621 ccagacgttc ctctgcgggt tcatcttcac gccagagtac aagtaatttc attgccttag
     1681 cccccatttc acgggcttta tgcgggtcga cggacatatc tatttcaacg ctatcaaccg
     1741 ggatgccatt acctgggata aaaagatcgg cagcgacaat caggccgcaa gaattagcaa
     1801 cagcgccctg ctcgactatt tgctcaagac aaaattgttt atccgccaga acggcagaag
     1861 cataaggaga aaggattcgg gtcgcggcaa ctttaaaatc ggtgagtaca ctgtcggcga
     1921 tgggttttgg ctgccctgct gccgcaaaca tcaagcgcat ggcctcacgc tgatcgacag
     1981 ctaacatggc aaatccacca cctgggcggg agatatcttt cagcgtaaat ggggtgaagt
     2041 gggatgacat agaaactcct gttaatagat aaaattaaag accagcctgc tggcgaacct
     2101 gatttagcag ggcactccag tcctgccgcc ctttgccgtc ttgacttgct gcagcgtaat
     2161 aactttctgc tgcaatcccc atattgagcg gtgcccccgt ctcccgagcg acgtcaactg
     2221 caatacgcag atctttcaac gccagatcca ccatgaaggc gggtgaaaga tcgcctttca
     2281 gcactttgcc aggccaggtg gtcgtaaaat gtcctttccc tgctgccgta ccactcatca
     2341 ccttaattgc gacatcaaga tttaatccca gtgactcaca taacacagcg gcctcggagg
     2401 acagcgcatt aagcgcaatg ctcatatagt tgttaattag cttcacgcgg atccccattc
     2461 ctgggccgcc cagcctcgac cagctcatta cccatgcaca taagaatcgg gcgtgcacgt
     2521 gcaatctgct catcagtgcc acccgctaaa atcagcaatg tgccatcaat cgcattcacg
     2581 gacgttctgc ccacgggagc gtccatcata ctgatgcctt tttcttataa ctcccgtatt
     2641 aatgcatcgg tctgtaaggg atgaatagtc gacatatcaa tcaataacgc gtcagatgaa
     2701 acagcctcac agacgccttt ttccccaaca gaacctgtcg aacaatgtca ccattgggaa
     2761 gcatagtgat gataaattca gcgcctgctg ctgcttccgc tggggtttgt gccgcagtgg
     2821 ccccctgcgt aactagcgca tcgacggcct gtgcattgac atcaaatacc tgcaatgaat
     2881 gccctttttg caatagattg ttagccattg ggctacccat ctgccccagc ccgagaaatg
     2941 caatggttgc catgaatact ctcctgtctg acattgacaa aataatgaca attgaaaatt
     3001 cgttttcgtc tttttttgag catatttgta acttatgttc aaaaacacga cacgcatcac
     3061 taatttgatc atttgcgtca tttaaattga ccaaagacga caaaattaaa caggacaaga
     3121 caaatatgac cagaattgca tgcgtgggta tcacagttca ggacagaatt tattctttgc
     3181 ccactctgcc ggagggcggc gggaaatatc aggcaaatca ttatcttgag attggtggcg
     3241 gcccggcagc aacagccgct gttgcaatcg caaagcttgg cgtggaggtt gatttcatcg
     3301 gtcgcgtcgg cgatgacagt tgtggaaata ccttacttgc agaacttgag ggttggggcg
     3361 tcaataccgc attttgccgc cgatatccta acgcccgttc gtcgcaatca gcgatcctcg
     3421 ttgatcagca tggcgaacgg attatcgtta attatccaag tcctgatctc ggtactgatg
     3481 ccgaatggtt agaagcgatc gatttctctc gttatgatct gattctggcc gatgttcgct
     3541 ggcatagcgg tactgaaaaa gcattctcgc tagcgtgcct tgcgggtgtg acaacgcttt
     3601 tagacgccga tatgacaccg caggatattt ctccacttgt cgcgcttgcc gatcacgccg
     3661 tgttctcaac accagggctg aaacgcatga ctggcctgca gtcacctgaa gaaggtttgt
     3721 tccaggcaac gacacaaaca gcaggtaaag tgtatgttac gctgggttct gaaggatcgt
     3781 tgtggattga agatggtcat ttgtgtcaac aggaggcatt ttctgtcaat gtggttgata
     3841 ccactggagc aggcgatgtt tttcacggcg cactcgcggt agcgttggca gaaaaaatgc
     3901 caacaaaaga ggctattcgt tttgccagtg cggttgccgc gatgaaatgt acccagcctg
     3961 gcggtcgggc cggcattcct aatcgtgagc aaaccgaatc atttttgtca ctttatgcgt
     4021 aaaatggtaa acatctaccg aggaggggca agggagtatt catgagtatc atcgaagtga
     4081 caggtaatcc acgccatgac caactcgttc atctaatcgc agaacgcggt tatatgaata
     4141 ttgaagaact ggcacaactg ctggatgttt caacgcaaac cgtgcgccgg gatatccgaa
     4201 aactcagtga gcagggcttg atcacccgtc atcatggagg ggccgggcgc gtctccagcg
     4261 tcatgaatac cgcttttgag caacgggaac tttcgctcac cgccgagaaa cgggcgatcg
     4321 ctgaggcagt cgccgattac cttcccgaac gctgtaccgt ctttatcacc atcggtacaa
     4381 ccgtagaagc cgttgccagg gcattactca accggcgtga tttacgcatt atcactaaca
     4441 gcctacgtgt ggcacagatt ctttataaga atcaggatat tgaagtgatg gtgccgggag
     4501 gcactttacg cgctcataac ggcgggatta tcggcccagg agccgtggat tttattgaag
     4561 gcttccgcgc agattattta atcaccagta taggtgccat tgaacatgac ggcaccctac
     4621 tggaatttga tgtaaatgaa gcgttagtcg cgagaacgat gattaaacat gcgcggaata
     4681 cattgttagt ggccgatcat acgaagtttg ccgcgtctgc tgccgtttca attggcaatg
     4741 cacggaatgt cagggctttt tttactgatg ccccgcctcc caattctttc tgccagttgt
     4801 taagtgaaga gaatgttgaa ctggtggttg ccgagcaaga agtatcctga aattgaaatt
     4861 tcggaaaatc cgctgggaat ttcagcggat tttgttttcc ataagcaaaa aaaacctgcc
     4921 agcgatggca ggttttttat aactaaaaaa cgaaattaat agtctttcgg tgcgcggttg
     4981 gcgcgacgac gatcgttttc cgtcaggtga cgtttacgaa tacggataga ggtcggagtc
     5041 acttctacca gttcgtcatc atcgatgaac tccagagctt gttccagagt catgcggata
     5101 ggcggaacca gaacaacggc ttcgtcagta ccggaagcac gcatgttggt cagtttctta
     5161 ccggtcaggc agtttacagt caggtcgtta gagcggctat gaataccgat aatctgacct
     5221 tcgtaaactt ctgcaccgtg accgaggaac agcttaccgc gatcctgcag accgaacagc
     5281 gcgaacgcga ccgctttacc ctgaccgtta gagatcagta cgccgttctg acgctgaccc
     5341 acttcacccg gacgtacgtc gtcgtagtgg ctgaaggtgg agtacagcag accagtaccg
     5401 gaagtcatgg tcatgaactc agaacggaag ccaatcagac cacggcttgg gatcacgtag
     5461 tcgagacgta cgcggccttt accgtctgga ttcatgtttt tcaggtcgcc tttacgttcg
     5521 cccagcgcct gcattacaga accctgatgc tgttcttcaa cgtccagagt cacgttttca
     5581 tatggctctt gtttacgacc gtcgatttca cggaagataa ctttcggacg ggataccgcc
     5641 agttcgaaac cttcacgacg catgttttcg atcagaacag acaggtgtag ttcgccacga
     5701 ccagaaacgc ggaacgcatc agcgtcttcg gtttcttcta cgcgcagcgc aacgttgtgt
     5761 accagttctt tgttcagacg atccaggatc tgacgagacg ttacgaactt accttcttta
     5821 ccgcagaacg gcgaggtgtt aacgcagaag aacatagaaa cggtcggctc atcaacggag
     5881 agtgccggca gcgcttcaac gttttgcgtg tcgcaaacgg tgtcagaaat gttcagttcg
     5941 ccaaggcccg tgatcgcaac gatatcgcca gcttccgcca ggtcggtttc gatacgttcc
     6001 agaccgaggt ggcccagcac tttaccgact ttcgcgttgc gggttttgcc ttcgctatcg
     6061 atgatagtga cctgctggtt cggcttcact ttaccgcgct tgatgcggcc aatgccgata
     6121 acgccaacat agctgttgta atcgagctga gaaatctgca tctggaacgg accgtcaagg
     6181 tcaacgtccg gcgcaggaac gtggtcaaca atcgcctggt acagcggggt catgtcttcc
     6241 gccatatctt cgtggtccag acccgcgata ccgttcagcg cagaagcgta aacgatcggg
     6301 aagtccagct gctcgtcggt cgcgtcgagg ttaacgaaca gatcgaatac ctgatccaca
     6361 acccaatcag gacgcgcgcc agggcggtca actttgttga taacaacaat cggcttcagg
     6421 ccgtaagcaa acgctttttt ggttacgaag cgcgtttgcg gcatcgggcc gtcaaatgcg
     6481 tcaaccacca gcagcactga gtctaccatg gacattacac gttcaacttc accaccgaag
     6541 tcggcgtgcc ccggggtatc aacgatgttg atacggtaat cattccattt gatagcggtg
     6601 tttttcgcga ggatggtaat cccacgctct ttctccaaat cgttggagtc catcacgcgc
     6661 tcttgggttt cggcacgaga gtcgaacgta ccggattgtt ggagcagctt gtctaccagg
     6721 gtggttttac catggtctac gtgcgcgatg atggcgatat tacgcaattt ttcgatcaca
     6781 actttgcctc aggcattaga aatagcgcgt tattgtacac ggattaatcg cactacaaaa
     6841 caggatcaca aacatcctcc gcaaacaagt attgcagagt ccctttgtga tcgctttcac
     6901 ggagcataaa aagggttatc caaaggtcat tgcaccaaca tggtgcttaa tgtttccatt
     6961 gaagcactat attggtgcaa cattcacatc gtggtgcagc ccttttgcac gatggtgcgc
     7021 atgataacgc cttttagggg caatttaaaa gttggcacag atttcgcttt atctttttta
     7081 cggcgacacg gccaaaataa ttgcagattt cgttaccacg acgaccatga ccaatccagg
     7141 agagttaaag tatgtccgct gaacacgtac tgacgatgct gaacgagcac gaagtgaagt
     7201 ttgttgattt gcgcttcacc gatactaaag gtaaagaaca gcacgtcact atccctgctc
     7261 atcaggtgaa tgctgaattc ttcgaagaag gcaaaatgtt tgacggctcc tcgattggcg
     7321 gctggaaagg cattaacgag tccgacatgg tgctgatgcc agacgcatcc accgcagtga
     7381 ttgacccgtt cttcgccgac tccaccctga ttatccgttg cgacatcctt gaacctggca
     7441 ccctgcaagg ctatgaccgt gacccgcgct ccattgcgaa gcgcgccgaa gattacctgc
     7501 gttccactgg cattgccgac accgtactgt tcgggccaga acctgaattc ttcctgttcg
     7561 atgacatccg tttcggatca tctatctccg gttcccacgt tgctatcgac gatatcgaag
     7621 gcgcatggaa ctcctccacc caatacgaag gtggtaacaa aggtcaccgt ccggcagtga
     7681 aaggcggtta cttcccggtt ccaccggtag actcggctca ggatattcgt tctgaaatgt
     7741 gtctggtgat ggaacagatg ggtctggtgg ttgaagccca tcaccacgaa gtagcgactg
     7801 ctggtcagaa cgaagtggct acccgcttca ataccatgac caaaaaagct gacgaaattc
     7861 agatctacaa atatgttgtg cacaacgtag cgcaccgctt cggtaaaacc gcgaccttta
     7921 tgccaaaacc gatgttcggt gataacggct ccggtatgca ctgccacatg tctctgtcta
     7981 aaaacggcgt taacctgttc gcaggcgaca aatacgcagg tctgtctgag caggcgctgt
     8041 actacattgg cggcgtaatc aaacacgcta aagcgattaa cgccctggca aacccgacca
     8101 ccaactctta taagcgtctg gtcccgggct atgaagcacc ggtaatgctg gcttactctg
     8161 cgcgtaaccg ttctgcgtct atccgtattc cggtggtttc ttctccgaaa gcacgtcgta
     8221 tcgaagtacg tttcccggat ccggcagcta acccgtacct gtgctttgct gccctgctga
     8281 tggccggtct tgatggtatc aagaacaaga tccatccggg tgaagccatg gacaaaaacc
     8341 tgtatgacct gccgccagaa gaagcgaaag agatcccaca ggttgcaggc tctctggaag
     8401 aagcactgaa cgaactggat ctggaccgcg agttcctgaa agccggtggc gtgttcactg
     8461 acgaagcaat tgatgcgtac atcgctctgc gtcgcgaaga agatgaccgc gtgcgtatga
     8521 ctccgcatcc ggtagagttt gagctgtact acagcgtcta atagttgaag ttgtactacc
     8581 cggcgcaaca acgccgggat ttagttgccg tggaaacttt cagcccatct ctgcatgggc
     8641 ttttttctcc gtcaattctc tgatgcttcg cgctttttat ccgtaaaaag ctataatgca
     8701 ctaaaatggt gcaacctgtt caggagactg ctttatggca acaggcacgc agcccgatgc
     8761 tgggcagatc ctcaactcgc tgattaacag tattttgtta atcgatgaca acctggagat
     8821 ccattacgcc aaccctgccg cgcaacaact gctcgcccaa agctcccgca aattgtttgg
     8881 tacaccgtta ccggaactgt tgagctactt ctcattaaat atcgagctga tgcaagaaag
     8941 tctggaggcg gggcaaggtt ttaccgataa cgaagtgacg ctggtcatcg acgggcgctc
     9001 gcatatcctt tctgtgacgg cccagcgtat gccggacggc atgatcctgc tggagatggc
     9061 tccgatggat aaccagcgcc gcttaagtca ggaacagcta cagcacgccc agcaggttgc
     9121 tgcccgtgat ttagtgcgcg gcctggcaca tgagattaaa aatccgcttg gctgtttacg
     9181 tggcgcggcg cagctgctca gcaaagcgtt acctgaccca tcactactcg aatataccaa
     9241 agtgattatc gaacaggcgg accggctgcg aaatctggtc gaccgtctgt tggggccgca
     9301 gctgcccggt acgcgcgtta ccgaaagtat tcacaaagtg gctgaacgcg tggtaacgct
     9361 ggtgtcgatg gaactgccgg acaacgtgcg gttgattcgt gattacgatc ccagcctgcc
     9421 ggaactggcg cacgacccgg atcaaattga acaggtcttg ctgaatattg tgcgcaatgc
     9481 gctacaggcg ctggggccgg aaggcggtga aatcattctg cgtacccgca ccgcgtttca
     9541 actgacctta cacggcgagc gctaccggct ggcggcgcgg attgatgtgg aagataacgg
     9601 gccgggcatt ccgcctcatt tgcaggatac gctgttttac ccgatggtca gcggccgcga
     9661 aggtggcacc gggcttggct tatccatcgc ccgtaatttg attgatcagc attcaggcaa
     9721 aattgaattt accagttggc caggtcatac cgagttctcg gtttacctgc ctatcaggaa
     9781 ataaaggtga cgtttatgca acgagggata gtctgggtag tcgatgacga tagttccatc
     9841 cgttgggtgc ttgaacgtgc gctcgctgga gcgggtttaa cctgtacgac atttgagaac
     9901 ggcgcggaag tactggaggc gctggcgagc aaaacgccgg atgtgctgct ttcagatatc
     9961 cgtatgccgg gaatggacgg gctggcgctg ctcaagcaga ttaaacagcg ccatccaatg
    10021 cttccggtca tcattatgac cgcacattcc gatctggatg ctgccgtcag cgcctatcaa
    10081 caaggggcgt ttgattatct gcccaaaccg tttgatatcg acgaagccgt ggcgctggtt
    10141 gagcgcgcta tcagtcatta ccaggaacag cagcagccgc gtaatattca gcttaacggc
    10201 ccaacgaccg atatcatcgg cgaagcgcca gccatgcagg acgtgttccg tattatcggt
    10261 cggctttcgc gttcttctat tagcgtgctg attaacggcg aatccggcac cggtaaagaa
    10321 ctggtcgctc atgccctgca tcgccacagt ccgcgcgcca aagcgccgtt tatcgcgctg
    10381 aatatggcag ctatcccaaa agatttgatc gaatcagaac tgtttggcca cgagaaaggc
    10441 gcgtttactg gcgcgaatac cattcgtcag gggcgttttg aacaggccga tggcggtaca
    10501 ttattcctcg acgaaattgg tgatatgccg ctggatgtgc agacgcgttt gctgcgcgtg
    10561 ctggcagacg gtcagtttta ccgcgttggc ggctatgcgc cggtgaaagt ggatgtgcgg
    10621 attatcgctg ccactcacca gaatctcgaa cagcgagtgc aggaaggtaa gttccgtgag
    10681 gatctgttcc accgcctaaa cgttatccgc gttcatctgc cgccgctgcg cgaacgtcgg
    10741 gaagatattc cccgtctggc gcgccatttt ttacaggttg ccgcgcgcga actgggcgta
    10801 gaagcgaagt tactgcatcc ggaaaccgaa actgctctga cgcgtctggc gtggccaggc
    10861 aacgtgcgcc agctggaaaa cacctgccgc tggctaacgg tgatggccgc cgggcaggaa
    10921 gtgttgattc aggatttgcc cggcgaactg tttgaatcaa cggttgcgga gagtacttcg
    10981 caaatgcaac cggacagctg ggcgacgctt cttgcgcagt gggcagacag agcgctgcgt
    11041 tccggtcatc aaaatctgct ttccgaagcg cagccagagc tggagcggac gttactgacg
    11101 accgcgttgc gacatacgca ggggcataaa caggaagcgg cgcggctact cggctggggc
    11161 cgcaacaccc tgacgcgtaa gttaaaagag ctggggatgg agtgattcac agcttgtgtg
    11221 taaagattga ttattgagcg caaattgctg gtattttacg ctttactgtt ccgataagtt
    11281 cagtatgatc tgcccggaaa acggggagag tcattatgct ggaatcaata attaatctgg
    11341 tatcgagtgg cgcagttgac agccacacac cgcaaactgc cgttgctgcc gtgctgtgtg
    11401 ccgcaatgat tgggctgttt agttgagttt cagattgctg atgaagtgct ctttgttcat
    11461 gccggatgcg gcgtgaacgc cttatccggc ctacaaaagc aatattttca acaggttttg
    11521 taggcctgat aagcgtagcg catcaggcaa tcttgttctc agcacattga tggcgctttc
    11581 gttttctact ttgtaaacga agcgccattc actattcaaa tcacccgtga gaactgctgc
    11641 atccgcgctt tctggcgcag ataggtatca aagcacatgc aaatgttgcg gatcagcaag
    11701 cgacctttcg ccgtcacctg tattcccttc tcatccacat ccaccagccc atcttttgct
    11761 aacggggcga gcagcttgag atcttccgca aagtaatcag cgaagtgcaa atcccactgt
    11821 ttctcaatag gggcgtaatc cagacggaag ttgcagatga gcgacttaat cacatcgcgg
    11881 cgaatacagt catcacgcgt tagcgcaata ccacgccaca gcgcattgcc ttgttcatcc
    11941 acttgctgat agtactgctt caactctttc tggttctgcg cgtagcagtc gccaatcatg
    12001 ctgatggcgg aaacgcccat ccccagcaga tcggtatcgc cctgagtggt gtagccctgg
    12061 aagttacgat gcagcacgcc ttcacgctgg gccaccgcca gctcgtcatc cggacgggca
    12121 aagtgatcca taccgataaa ctgatagccc gattgcgtca ggaaggcgat ggtttcctgc
    12181 aggatatcga gtttttgctg cggactcggc aggtcagcat ctttgatttt gcgctgagca
    12241 gcaaaaatgg tcggcagatg cgcgtagtta aagacactca gacgatcggg gttcagctcc
    12301 gccacacgtt tcagggtaaa ggcgaaactc tccggcgtct gtttcggcag gccgtaaatc
    12361 aggtcgatgt tggtggaggt aaaaccaatc tcacgcgcat ggttaagcag tgcaaagatg
    12421 aactcttcat cctgctcgcg gttaaccaga cgttgcactt ctttgttgaa gtcctgcacg
    12481 cccatgctca ggcgattaaa gccttcggcg cgtaaatgat cgagtacatc cagttcgatt
    12541 tcccgcggat cgacttcgat cgaaatctcc gcatcggcat tgaactggaa gttttcgcgc
    12601 agcagcttca tcaggcggct gatttgcgct ttattcagat acgtcggcgt tccgccgccc
    12661 cagtgcaatt ggctgacgtg acgcccggcg aacagcggtg cacgatggac gatttcttgc
    12721 tccagcgcgt ccagatactg atcggccttg tgctgctggc gagtaacaat cttattacaa
    12781 ccgcagaagt aacaaagctt atggcagaac gggatatgta cgtagagaga taatggacgc
    12841 tcaggatagc gcgccacggc ttgtaaaaac gcctgttcgc cgaagtcttc tgaaaactcc
    12901 agcgcggtcg ggtacgaggt gtatcgtggc ccggaatagt tatatttctg gatcagggcc
    12961 agatcccagt cgatttgctg tacagacatg ctcactcctt ccgatggcgt ctctggcggc
    13021 tacggcgtac cggcggatgc ccgtttcggg tcatcagccg gttgcgcagc cacttttgtc
    13081 gccgcgacaa ccgctgtagt ttaacgaata accacaccag ataacatata accggaaggg
    13141 ttatcagcag aacgggaagg cccacggcgg caatccgtta gttgccccgc agcagacgca
    13201 tcatgtcttc ttgcttctcg tcttcttcct cttcttcgtc atcgtcataa gagaggccga
    13261 gtttctgcat caactcatca atacgatcca gtttagcatc cacccaggat tgctcttcgg
    13321 cactcagggt ttcgcctgct tccagacgtt ccagcagcgc atccagacgc tcatccgttt
    13381 ccagtaattc caactccgcc tgcggtgaaa gcataggttt ctcactcttc ggtttgtgct
    13441 gtttggtgac tttttcagtc acgcccaatg gaataggggt tttactgcca atacgtggat
    13501 cttttggtgc gttctggcct ttgctgcctg acgtggtgtt tccgcccgct gcgcggctgc
    13561 ccggcgcatg accacgacgt tttttctgac gcttgcgatc acgagcttcc tgatccagct
    13621 cctcgcgtgt ttttcgacgc gcttttgcat gacctttgct gcgtgagttt gaagatgatg
    13681 gtttcataat ggttcgtctt ttagccgttt tattcagtat cgatttgcgg cggaatctaa
    13741 cagaaagcaa gcaaagaaaa aaggcgacag attactctgt cgcctttttt cctgactcat
    13801 aacccttaac ggatcttaca atccttgcag gccgccaaca caccctgttt ttcctttagc
    13861 cggaacaatc cgtgttgatt ccatttccgt ttaattacgt ctccggacgt ttgtcttcct
    13921 gacaatcctc tgtcttcgcc tcctggcgct cctgaccctc atcctgagtc attgttcctg
    13981 ttagcgtcct cgctctatgg gtgctacttt acgcctttgc tttaaacaaa caatcaaccg
    14041 ccatcagtat ttgcacattt tcagagtttt atatagctta tttgacatgc atcgcagaat
    14101 tttctctgct atttcgcata aagactatcg gcaatgtctc acaaagcgta tggcttttac
    14161 ttacaacgct cacgccgaaa aatccgcctt ttattatggt tcaggtataa tcgccacaaa
    14221 gctttgactg acggagacga ccgctttgac taatttgaat tatcaacaga cgcattttgt
    14281 gatgagtgcg cctgatattc gccacctacc ttccgatacc ggaattgaag tggcttttgc
    14341 aggccgttcc aacgcaggta aatccagcgc gctgaacacg ctgactaacc agaaaagcct
    14401 ggctcgtacc tcaaaaaccc cagggcgcac ccagcttatc aacctgtttg aagtggctga
    14461 cggcaagcgt ctggttgact tgcctgggta cggttatgcg gaagtcccgg aagagatgaa
    14521 gcgcaaatgg cagcgtgcgc tcggcgaata cctcgaaaaa cgtcagagcc tgcaaggtct
    14581 ggtggtgcta atggatattc gccatccgct gaaagatttg gatcagcaga tgattgagtg
    14641 ggcggtagac agcaatatcg ccgttctggt gctgctgacc aaagcggaca aactggcaag
    14701 cggcgcacgt aaagcccaat tgaatatggt gcgtgaagct gtactggcgt ttaacggtga
    14761 tgtgcaggtt gaaacgtttt cttcgttgaa gaaacaaggc gtggacaagc tgcggcagaa
    14821 actggatacc tggtttagcg agatgcagcc tgtagaagaa acgcaggacg gcgaataatt
    14881 ttcttgcctt aatgcttgtg ccggatgtgg cgtatccggc ccgtaaattc aatagattac
    14941 aattctaccg ttggcctgat aaacatagcg catcaggcat tacggatctt ttctttcgcc
    15001 caataaaaaa cgccccagtc attactgact ggggcggcta aaatattcag ccaaatccga
    15061 ttacgtgaag taaaaggtct gaaagataga acatcttacc tctgtaccct acgcgactaa
    15121 ctttactctt ttttgttcag ttcagaaagc actttttgta attttttttc agttgttgca
    15181 taggaatttc taatagccat cacaaaacgt gacagcttat gttgcttact tacgaaaaaa
    15241 gggcatgttc aggcgaatct tagtgcgcct gatcccagtt ttcgccactc cccacttcca
    15301 ccagcaacgg cacatccaga cgggtacagt tttccatcag ttgatgaatc tgcttcgcga
    15361 cggcatcaac atcatcttta tgaacttcaa ataccagttc atcgtgtacc tgcatgatca
    15421 tacgtacacg cggttgctca gcctgtaacc acgcatcaac ggcaatcatc gcccgtttga
    15481 taatgtcggc ggcggttccc tgcattggcg cgttaatggc tgcacgttca gccgctgcac
    15541 gacgagcacc attgctggat ttgatatccg gcagatacag acggcgtccg tccagcgttt
    15601 caacgtagcc ctgctctttc gcctgagcac gggtgcgttc catatactcc agcacgccag
    15661 ggtagcgttc gaagtaaagg tccatgtact tctgcgcttc tttacgtgga atgttcaatt
    15721 gccgcgccag accgaaagca ctcatgccat aaatcagacc aaagttgatc gctttcgcgc
    15781 tacggcgttg ctcgctggtg acggtttcca gtggcaaacc aaacacttct gccgccgttg
    15841 cccggtggat atcttttcct tccgcgaatg cggtcagcaa gcctttgtca cgcgaaagat
    15901 gcgccataat gcgcagttca atctgcgagt agtccgctga gacaatcaca taatcctctg
    15961 gcgcaataaa cgcctggcgg atacgacgac cttcttcgtt acgcaccgga atgttttgca
    16021 ggttaggatc ggttgacgat aaacgtcccg ttgcagttac tgcctggtga taagaggtat
    16081 gcacacgccc ggttttcggg ttgatcatca gcggcagctt gtcggtgtag gtcgatttca
    16141 gcttcgccag accacgatac tccagaatca cttttggcaa cggatagtcc agcgccagtt
    16201 cttccagtac ctcttccgac gttgacggcg cgccacccgg cgttttcttc agcggtttaa
    16261 taccctgttt ttcaaacaga atggtttgca actgcttggt ggaagaaagg ttaaattctt
    16321 cacctgcaat ttcatgcgct ttcttttcca gctcagccag acgcaaggtg agctcttcag
    16381 aatgattgtg cagcactttc ggatcgatct tcacaccgtt acgttcaatg cgtgaaagca
    16441 ccggcaccag cggcatttcg atattctcga agacgttcaa cggccctttg tgtttttgca
    16501 ggtccggcca cattttcaga tgcaactgca aggtgacatc agcatcttcg gcggcgtaac
    16561 gtccggcctc ttcgagggca atctggttaa aggtcagttg atttttgcct ttacccgcaa
    16621 tctcttcaaa agtgatggtt ttgtgcttca accaacgttc cgcgaggctg tccatatcgt
    16681 gacgcccggc aacgctattg agaatgtagg actccagcat ggtatcaaac gcaatcccac
    16741 gcagctcaat gccgtaattc gccagaatac cgcgatcgta tttcaggttt tgcccgacct
    16801 tcagcgcctt ttcatcttcc agcagcggtt ttagcaactc gagtgcacgc tcgcgagaga
    16861 tttgatcggg cgcatcaaga taatcatgag caaccggaat atatgccgct acgcctggct
    16921 cgatagcaaa agaaagcccg accaggttag cagagatgtt atcaaggctg tcggtttcgg
    16981 tatcaaatgc aaataccggc gctttttcca gcttcgcaat ccacgctttc agtgtttctt
    17041 catcaaggat ggtgacgtag ttgtcataag aaatcaccgt tgccgtcact tctggcgctt
    17101 cgtctgcaac actggtttcc tgcggcttcg cggctggttt tgcccctttg gcctgtaacc
    17161 atttgcccgc ttcgacatca gcagtccagc gtttgaactc atactttttg aacagcccca
    17221 acaactcttc cgctgccggt tgctgcactt ccagttgttc acaggtcagc tccagttcaa
    17281 cgtcggtttt aatcgtcgcc agctggtatg agagataagc aacttctttg ttttgctcga
    17341 gcttcgctgc cattgttttc gcgccacgga agctcaaccc agcaattttt tctggctcgg
    17401 catacagcgt atccagcccg cccagacctt gcagcaatgc ctgcgcggtt ttttcaccga
    17461 cgcccggtac gccagggatg ttatcggagg agtcacccat cagcgccagg aaatcgatga
    17521 tcagttctgg cggcacgccg tacttattca ccacctcttc cggtccgagg atggtattcg
    17581 tcatggtatt gataagcgta atatttggcg tcaccagctg cgccatatct ttatcgccag
    17641 tgctgatcag caccggacgc ccggcttttt cggcttcgcg cgccagagta ccgataacgt
    17701 cgtccgcttc tacgccagaa accgccagca gcggcagtcc catcgcttta accatcgcgt
    17761 gcagaggttc gatttgtgct ctcagatcgt ccggcattgg cgggcgatgt gatttgtaat
    17821 gttcaaacag ttcatcacga aaggtttttc ccttggcgtc aaagaccacc gctgcatgcg
    17881 tcggtttata ttgcatgatc agactgcgca gcatgttgag gacaccatac atcgcaccgg
    17941 tcggctcgcc tgcgctgtta gtcagcgggg gaaacgcgtg atatgcgcga taaagataag
    18001 atgaaccatc tacaaggata agtggatttt gggggatctg aaccataatg tccgtgcctg
    18061 tttatcagat tatgggtaaa ggatgccaca gacaggataa aaacatgagt ttttcaccgc
    18121 ttttcgtgaa aatcttttgt agatcttctg gatcgctcgc aaatcgtcat gtggataact
    18181 ttgtgcataa attatttaca tcgcttttaa tttattatca tgctttttac agtatgatgt
    18241 ttgtctttgt ttttcatgta gttaaaaata aagccatccc taataattga gataatggga
    18301 ttttttctaa tgtggataga tatgaattat ttttctcctt aaggatcatc cgttatttgg
    18361 gtcgttttct gctaaaatct gcgccttgcg cttctttagc gcactgtcta tggctaacct
    18421 tttgaataaa ttcattatga cgagaatact cgctgcgata acccttttgc tgagtatcgt
    18481 attgaccatt ttggtcacta ttttttgttc cgtcccgatc atcattgccg ggattgtaaa
    18541 actattgcta cctgtaccag tcatttggcg aaaggtttcg cgtttttgtg attttatgat
    18601 gtattgctgg tgtgaaggtc tggcggtatt actgcatctg aacccactcc tgcaatggga
    18661 agttcacggg ctggaagggt taagtaagaa gaactggtat ctgcttattt gtaaccaccg
    18721 tagttgggca gatattgtcg tactgtgcgt gctgtttcgt aagcacattc cgatgaataa
    18781 atatttcctc aagcaacagc tggcctgggt gccatttctt ggcctggcgt gctgggcgct
    18841 ggatatgccg tttatgaagc gttattcccg cgcttattta ttacgtcatc cggagcgacg
    18901 tggtaaagat gttgaaacca ctcggcgttc ttgtgaaaag tttcgcctgc atcccaccac
    18961 cattgtcaat ttcgttgaag gctcccgttt cacgcaagaa aaacatcagc aaacccactc
    19021 cacttttcaa aacttgttgc caccaaaggc ggcaggcatt gcgatggcgc taaatgtact
    19081 gggtaaacaa ttcgataaac tgcttaatgt tacgctgtgt tatccggaca ataaccgtca
    19141 gccgttcttc gatatgttaa gcggtaaact gacgcgaatt gtcgttcatg tggatttaca
    19201 gcctattgcc gatgagttac atggcgacta catcaatgac aaaagcttta agcgccattt
    19261 tcagcaatgg ctgaactcac tgtggcagga aaaagaccga cttctgacgt cgttgatgtc
    19321 atcacagcgg caggacaagt aaattttgct cgcctctgaa tgagcagagg cgagtgagta
    19381 ttttaatgaa caaaacgtcc ggcacgagac ataaattctt cttcgctcat ctcctgtccg
    19441 ttaaaaacaa ctttacccgg tgtataacgc agttgcagcg gggcggtatt gttgtcaatc
    19501 gtgattaact gaaacatctg acctaaggtc atcatcccgc tgatttgttt atcagcccgc
    19561 ttttgcgctt tttccgcatc cattccttca gataaattaa gctgttttgc ggtttctgtg
    19621 acgacattaa gcggtaactt cacatcaaaa ttgagcgatt tgatatcttt gtttgtggat
    19681 gatgaagatt tggctgggtc ggcaatactg atatccagat tggcatttag ttcgccgagt
    19741 gcgttcttcc atcttaccgg ttgtttaatg gtcggctcac tttgttgtaa taacggtaaa
    19801 tactctttga acaatgcagc attcacttct tgcagagcaa cttcatcgtt tgctaactca
    19861 gggtgtgcag caagctgctt ctgcatcgca atgttatact ggatgataaa ttggcgcact
    19921 gctgagggat caatagattc agcaatcaat gaccactcac cactaccgag ttgctgattc
    19981 ccttttgtta acttatcaag ttcgtaggtc agattgacat tgatataatc tttgtcttta
    20041 acgcgatcca gcctggtttt tgcaacgaaa gcatcgattt gggcaacgtc ttccccctga
    20101 ttgataatat taacctgatt aaatttcgac tcgctttcac caaccggaaa tttcttttct
    20161 tctaatcgtg tcagagaatc aatggtaaaa ctttttgccg ttactttgtt cattggtgat
    20221 aattgcagaa caatatcttc gactttgcct tcaatatcca ggttagacaa tgaactacca
    20281 tcaccattag aagtaaactg gccctcacca aaagaaaact ttccatactc tgcaggggca
    20341 acatctaatg tcgtagagaa tgagccacca aacgcgaatc gcaatgtcgc ttccacgggc
    20401 gatttatttt tcgcggcgat aaatagcggt tgtgtcagtt cattattcac taagttcact
    20461 tttgccgctg ccagtgctgg gatgacatta ccatgcatta acattgtgat gggcaacgga
    20521 ccgtgctcaa catccacatc aaatgcaact ttctggcctg gcttgatatt gagatcgggt
    20581 gcaccgttat caaatgaaat ttgcatttga aaatgggaat taaaaaagcc tttgtcaaag
    20641 tttttataac ttaacgtcat atcgtaggca tgttcacctt tctttttagc atcgttaaaa
    20701 tctttaataa atttttcgac accaggctga atttgcgtac ctgtgtacca tgtgccacca
    20761 ccccagatta cggctaacgc aacaataaca cctgtagctg acttacgtat catataaata
    20821 ttccctgata aaacagcaaa actttgaata tccacttatg ctgaaataat gtccagcggc
    20881 aggatgtatt atcagaatgt atttatattt attaaataat aaaaaaagcc cgtgaatatt
    20941 cacgggcttt atgtaattta cattgaatta ttttttctcg gacagatatt tcactgtatc
    21001 agcatactgc tgaacaaaaa catccatatt gctggtatcc ataccctgcg gattcagctg
    21061 atatttaccg ttaacaaaca tcgccggaac accgcgcaat tgcacgtcag ctgcagcttt
    21121 ttcctgctga gctaccagag atttcaccac gaagctgttc cacgccgcgt cgtactcttc
    21181 acctttaata cctgcgttga taaatacatc gcggatatca gaagcagaac gaatggtctg
    21241 ggttttctgt acgccttcaa acagcggaac agtcactttg tcttccacgc ccagcgccat
    21301 cgccacagcc catgcctgag tcagatcttt gcccaggtca ccacccatga agttgacgtg
    21361 gtatttagtc atcttcacgc cttccggcag ttttttcttc acattatcag aaatatgcag
    21421 aacttcttca aactgatagc agtgcggaca gaagaaagag aaaaactcca gcacttgcgg
    21481 cgcgccagct accggttttt ccagggtagt gtactgttta ccatcttcat actgcgccgc
    21541 cgatgcgcta aacgctaaaa ctaaaccagc cagcgccagc caaatctttt tcatgatcta
    21601 ctctctccga ttaatacata ggtgttaatt gtaaaggggg ttcttgtaga acttttgcct
    21661 gttctataaa agtcgccgtt tgtcgcagcc agtaatcttc cccggttaac cacgggaaat
    21721 gtttcgggaa cgcgggatca gcccaacgcc gcattagcca ggcaagataa taaaccaaac
    21781 gcatggcgcg taaaggttca atcagtccga tttcagcggt gtcgaactcg ctaaattctt
    21841 cataagcttc aataatagtt tccagttgca tccgctgctc ggctttatcg ccattgagca
    21901 acatccacaa atcctgaata gctggaccat tacgtgcatc atccagatca acaaacattg
    21961 gaccatcgcg ccagagaata ttcccggcgt ggcagtctcc atgtaagcgc agaacggtgg
    22021 aatcttcccg ccagtgcgct gtaacggcgg cgatcagctc atctgtcgct ttcaggaatg
    22081 ccgctttcaa cccggaaggt atcagtgtag cgtcctcaaa cagcttgcgt ggctcaatga
    22141 gatattcatt cagaccgatg gtcgggcgat ggataaaaag ctgtttgcgc cccgtctggt
    22201 gcatacgccc taaataacgc ccaaccgctt ccatctgatc gatattatca gcttcgaact
    22261 ggcgaccacc gacgcttgga aaaacagcga aataaaatcc ctgatgattc aataaagtct
    22321 gaccgttaaa ggccacaggt gctgcgaccg gaacttcatc atttaccaac tgcaacgcaa
    22381 attgatgttc tccgaggatt tgatcggctg tccaacgttc agggcgataa aatttgacga
    22441 caatacgtcg acgatcttcg tcctgaaatt gatagacacg gttttcatag ctgttaagcg
    22501 gggtaagacc ggaatccacc cggatccctt gctcaaatag agcatccatg atggtatccg
    22561 ggtgtagtgt ctggaaagta aaagcgctgt tgttcatccc atcatccgga aaacattacg
    22621 aatgatgaag gatatcattt cacgatgatt ttggtggcgc cgcttacaag cttttactct
    22681 ttaattacgc cgcgagcgcg taacagcgcc gttttgaagt cttcttcata atctttctgc
    22741 aaacccggga tcaccgcatc tttcgcggaa tcacgcattt tcaggtgata gatcagaatg
    22801 tcatccgtca aatccgccag ttcgccgtca aaacctgact ctttcgccag tttctgcaaa
    22861 aattgcaaca ggttaaggtc tggctctttt tgccaggctg gctggaggaa ttcaataact
    22921 tcattcagac gtttacattt catagtgatg ctccttactc ttgagacaga cacgttagca
    22981 gggtcaatcc cacaataaaa gaggcgatat cggtgaatct gatgacgacg ataacaggcg
    23041 ttgtgctggc aggcggtaaa gccagacgaa tgggcggcgt agataaagga ttgcttgaat
    23101 taaacggcaa accattatgg caacatgtcg ctgacgcgct tatgacgcag ctctctcacg
    23161 tcgtggttaa tgccaatcgt catcaggaaa tctatcaggc aagcggtctg aaagtgattg
    23221 aagattcact ggcggattac ccaggccctc tggcaggaat gctttcagta atgcagcagg
    23281 aagctggtga gtggtttttg ttttgcccgt gcgatacgcc ttacattccc cctgatttag
    23341 cagcccggct taatcatcag cgcaaagatg cgcctgtcgt gtgggtccat gacggtgaac
    23401 gcgatcaccc gactattgct ctggtaaacc gcgctattga gcctttatta ctggaatatc
    23461 tgcaagcagg agaacgccgg gtaatggcat ttatgcgtct ggctggcggt catgcggttg
    23521 atttcagcga tcataaagat gcatttgtta acgtgaatac gccagaggag cttgcccgat
    23581 ggcaggaaaa acgatgatac cgttactcgc ctttgccgcg tggagtggta ccggaaaaac
    23641 tacgcttttg aaaaaactga tcccggcatt atgcgccaga gggatccgtc cagggctgat
    23701 taagcatacg caccatgata tggatgttga taagccaggc aaagatagct atgagctgcg
    23761 caaggctggc gcggcacaaa ccatcgttgc cagccagcaa cgatgggcct tgatgacgga
    23821 aacaccagac gaagaagagc tggatctaca gtttctcgca agtcgaatgg atacctcaaa
    23881 gctggatttg attctggtcg aagggtttaa gcatgaagag atcgcaaaga ttgtgctgtt
    23941 tcgcgatgga gccggacatc gacctgaaga attagtgata gacaggcatg ttattgctgt
    24001 agccagtgat gtgccgctta atcttgatgt cgcattactg gatattaatg atgttgaggg
    24061 gctggctgat tttgtagtgg agtggatgca aaagcagaac ggataagcaa gagtaggctg
    24121 gatcagacgc agccagtgtc gcatccgacc tttttctgca cca
//
LOCUS       DAJVUN010000050        24145 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.050, whole genome shotgun sequence.
ACCESSION   DAJVUN010000050 DAJVUN010000000
VERSION     DAJVUN010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24145
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.050"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            28..189
                     /locus_tag="OQQ76_001661"
     CDS             28..189
                     /locus_tag="OQQ76_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000395868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968203.1"
                     /translation="MEFSFSPKLLVVAVAAALPLMASAADTPSTATARKGFAGYDHPN
                     QYPQNAAIY"
     gene            complement(273..1508)
                     /locus_tag="OQQ76_001662"
     CDS             complement(273..1508)
                     /locus_tag="OQQ76_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HCS1968204.1"
                     /translation="MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTH
                     MDDDMLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLDFYRRAVKLQAKYGAGRKISN
                     SFQTNGVLLDDKWCAFLAENHFLVGLSLDGPAEIHNQYRVTKGGRPTHELVMRALTLL
                     QKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETAASDGLKLH
                     APGDIQGELTEWSVHPDEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVC
                     HHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQVFGEDKFKQ
                     LPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLL
                     AHGRPASDIMQAHLLVVNK"
     gene            complement(1655..1731)
                     /locus_tag="OQQ76_001663"
     tRNA            complement(1655..1731)
                     /locus_tag="OQQ76_001663"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1695..1697),aa:Pro,seq:tgg)
     gene            complement(1774..1860)
                     /locus_tag="OQQ76_001664"
     tRNA            complement(1774..1860)
                     /locus_tag="OQQ76_001664"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1824..1826),aa:Leu,seq:cag)
     gene            complement(1881..1956)
                     /locus_tag="OQQ76_001665"
     tRNA            complement(1881..1956)
                     /locus_tag="OQQ76_001665"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1921..1923),aa:His,seq:gtg)
     gene            complement(2015..2091)
                     /locus_tag="OQQ76_001666"
     tRNA            complement(2015..2091)
                     /locus_tag="OQQ76_001666"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2055..2057),aa:Arg,seq:ccg)
     gene            complement(2194..3579)
                     /locus_tag="OQQ76_001667"
     CDS             complement(2194..3579)
                     /locus_tag="OQQ76_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1968205.1"
                     /translation="MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS
                     VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA
                     VGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT
                     IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL
                     IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNESGSNGSPFVLTFA
                     KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVA
                     GVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAA
                     IASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGL
                     NRHGKAHKLEE"
     gene            complement(3770..4510)
                     /gene="rffM"
                     /locus_tag="OQQ76_001668"
     CDS             complement(3770..4510)
                     /gene="rffM"
                     /locus_tag="OQQ76_001668"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HCS1968206.1"
                     /translation="MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAI
                     NAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMA
                     RAGKEGTPVFLVGGKPEVLAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASG
                     AQIVTVAMGSPKQEIFMRDCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWL
                     YRLLSQPSRIKRQLRLLRYLRWHYTGNL"
     gene            complement(4513..5865)
                     /gene="wzyE"
                     /locus_tag="OQQ76_001669"
     CDS             complement(4513..5865)
                     /gene="wzyE"
                     /locus_tag="OQQ76_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA oligosaccharide polymerase"
                     /protein_id="HCS1968207.1"
                     /translation="MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFL
                     LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPR
                     RPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR
                     FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG
                     IIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLA
                     LLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTREVLNNHSGLAIS
                     PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF
                     NMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG
                     "
     gene            complement(5862..6941)
                     /gene="rffT"
                     /locus_tag="OQQ76_001670"
                     /gene_synonym="wecF"
     CDS             complement(5862..6941)
                     /gene="rffT"
                     /locus_tag="OQQ76_001670"
                     /gene_synonym="wecF"
                     /EC_number="2.4.1.325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HCS1968208.1"
                     /translation="MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDD
                     GLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPS
                     QFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGEL
                     LYFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNDHIAALRAVHQQFGDTVKVVVP
                     MGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQG
                     IGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKN
                     TIAFFSPNYLQGWQRALAIAAGEVA"
     gene            complement(6938..8188)
                     /gene="wzxE"
                     /locus_tag="OQQ76_001671"
     CDS             complement(6938..8188)
                     /gene="wzxE"
                     /locus_tag="OQQ76_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid III flippase WzxE"
                     /protein_id="HCS1968209.1"
                     /translation="MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFR
                     QLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAA
                     APISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGV
                     LAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLS
                     KFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYL
                     LPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLF
                     AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQ
                     AYMATYIVYFSLCCGVFLLWRRRA"
     gene            complement(8190..9320)
                     /gene="rffA"
                     /locus_tag="OQQ76_001672"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(8190..9320)
                     /gene="rffA"
                     /locus_tag="OQQ76_001672"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HCS1968210.1"
                     /translation="MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF
                     GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRP
                     DTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST
                     YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFR
                     GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGR
                     IELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFG
                     EFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS"
     gene            complement(9325..9999)
                     /gene="rffC"
                     /locus_tag="OQQ76_001673"
                     /gene_synonym="wecD"
     CDS             complement(9325..9999)
                     /gene="rffC"
                     /locus_tag="OQQ76_001673"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HCS1968211.1"
                     /translation="MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRV
                     QAKIVASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVVAQETDIPALRQLASA
                     AFAQSRFRAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNA
                     TDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVEST
                     AYWLYR"
     gene            complement(9977..10858)
                     /gene="rfbA"
                     /locus_tag="OQQ76_001674"
     CDS             complement(9977..10858)
                     /gene="rfbA"
                     /locus_tag="OQQ76_001674"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HCS1968212.1"
                     /translation="MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA
                     GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPS
                     CLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEK
                     PKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRG
                     FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKT
                     GYGQYLLELLRARPRQY"
     gene            complement(10925..11944)
                     /gene="rffG"
                     /locus_tag="OQQ76_001675"
     CDS             complement(10925..11944)
                     /gene="rffG"
                     /locus_tag="OQQ76_001675"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCS1968213.1"
                     /translation="MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSL
                     APVAQSDRFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWNTLTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG
                     NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPN
                     KPHGVVHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLAN
                     ESWWK"
     gene            complement(11944..13206)
                     /gene="wecC"
                     /locus_tag="OQQ76_001676"
     CDS             complement(11944..13206)
                     /gene="wecC"
                     /locus_tag="OQQ76_001676"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HCS1968214.1"
                     /translation="MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQYAVDTINR
                     GEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAA
                     RSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPER
                     VLPGQVMVELIKNDRVIGGMTPVCSTRASELYKIFLEGECVVTNSRTAEMCKLTENSF
                     RDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA
                     QNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNI
                     DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVM
                     LVDHSQFKVINGDNVHQQYVVDAKGVWR"
     gene            complement(13203..14333)
                     /gene="wecB"
                     /locus_tag="OQQ76_001677"
     CDS             complement(13203..14333)
                     /gene="wecB"
                     /locus_tag="OQQ76_001677"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312746.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HCS1968215.1"
                     /translation="MKVLTVFGTRPEAIKMAPLVHALAKAPFFEAKVCVTAQHREMLD
                     QVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLAT
                     SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN
                     VADSRIFITGNTVIDALLWVRDQVMSSDTLRSELAANYPFIDPDKKMILVTGHRRESF
                     GRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPF
                     VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVE
                     EVTRLLKDENEYQTMSRAHNPYGDGQACSRILEALKNNRISL"
     gene            complement(14389..15435)
                     /gene="wzzE"
                     /locus_tag="OQQ76_001678"
     CDS             complement(14389..15435)
                     /gene="wzzE"
                     /locus_tag="OQQ76_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA polysaccharide chain length modulation
                     protein"
                     /protein_id="HCS1968216.1"
                     /translation="MTQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIA
                     LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYK
                     EFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDS
                     VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKA
                     IYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGP
                     AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGG
                     LIGAGVALTRRCSK"
     gene            complement(15447..16550)
                     /gene="wecA"
                     /locus_tag="OQQ76_001679"
     CDS             complement(15447..16550)
                     /gene="wecA"
                     /locus_tag="OQQ76_001679"
                     /EC_number="2.7.8.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HCS1968217.1"
                     /translation="MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQ
                     GLIPLVGGISVYAGICFTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRAT
                     IQAAVGIVMMVFGKLYLSSLGYIFGSWEMVLGPFGYFLTLFAVWAAINAFNMVDGIDG
                     LLGGLSCVSFAAIGMILWFDGQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDA
                     GSTLIGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD
                     RQHIHHLIMRAGFTSRQAFVLITLAAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLY
                     GYCIKRAWKVARFIKRVKRRLRRNRGGSPNLTK"
     gene            complement(16790..18049)
                     /gene="rho"
                     /locus_tag="OQQ76_001680"
     CDS             complement(16790..18049)
                     /gene="rho"
                     /locus_tag="OQQ76_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HCS1968218.1"
                     /translation="MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR
                     PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
                     VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
                     FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE
                     IDAMEFLINKLAMTKTNDDFFEMMKRS"
     gene            complement(18134..18235)
                     /gene="rhoL"
                     /locus_tag="OQQ76_001681"
     CDS             complement(18134..18235)
                     /gene="rhoL"
                     /locus_tag="OQQ76_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rho operon leader peptide RhoL"
                     /protein_id="HCS1968219.1"
                     /translation="MRSEQISGSSLNPSCRFSSAYSPVTRQRKDMSR"
     gene            complement(18376..18705)
                     /gene="trxA"
                     /locus_tag="OQQ76_001682"
     CDS             complement(18376..18705)
                     /gene="trxA"
                     /locus_tag="OQQ76_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017375425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HCS1968220.1"
                     /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD
                     EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE
                     FLDANLA"
     gene            18836..20101
                     /gene="rhlB"
                     /locus_tag="OQQ76_001683"
     CDS             18836..20101
                     /gene="rhlB"
                     /locus_tag="OQQ76_001683"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HCS1968221.1"
                     /translation="MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTL
                     AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHA
                     DAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ
                     VVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEY
                     IEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHL
                     AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTD
                     LPKPLRLTRPRTGNGPRRTGAPRNRRRSG"
     gene            20235..21719
                     /gene="gppA"
                     /locus_tag="OQQ76_001684"
     CDS             20235..21719
                     /gene="gppA"
                     /locus_tag="OQQ76_001684"
                     /EC_number="3.6.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine-5'-triphosphate,3'-diphosphate
                     diphosphatase"
                     /protein_id="HCS1968222.1"
                     /translation="MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAA
                     GLNSENALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQE
                     ILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSL
                     SMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQAL
                     QEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIF
                     TELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVA
                     ANFFDQVEKEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPA
                     QKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMT
                     LQANHELLTLTLPQGWLTQHPLGKEIIAQESQWQSYVHWPLEVH"
     gene            complement(21766..23787)
                     /gene="rep"
                     /locus_tag="OQQ76_001685"
     CDS             complement(21766..23787)
                     /gene="rep"
                     /locus_tag="OQQ76_001685"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HCS1968223.1"
                     /translation="MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG
                     YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK
                     ANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGER
                     DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQD
                     TNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQN
                     YRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEHEAERVTGELIAH
                     HFVNKTQYKYYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV
                     LTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY
                     EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQL
                     FSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP
                     YVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRP
                     EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK"
BASE COUNT         6062 a         6628 c         5983 g         5472 t
ORIGIN      
        1 tgatgacatg aaaccggagc attttgcatg gagttttcgt tttcacccaa acttcttgtt
       61 gttgctgtcg ccgccgctct tcctctcatg gccagcgcag cagatacccc gtcaactgcc
      121 accgcacgca aaggctttgc cggatacgat cacccaaacc agtatccaca gaacgctgca
      181 atttattgaa tttgcacgat catgtaggcc ggataaggcg tttacgccgc atccggcaat
      241 caaccgcagg cggccacaaa atggccgcta ttttacttat tcaccaccag caaatgtgcc
      301 tgcataatgt cactggccgg gcgaccgtgc gccagcaaat cagccattgc tttaagatat
      361 ggcggtagat ggcggaaata acgctgatac ccggcacaca aataattcag ccccggtttg
      421 ccgctggcat cgagcatgaa gcggtgtttc gggcagcctc cccagcacgc ttttaacacg
      481 ttacaactgc gacactgcgc cggtaattgc ttaaatttat cttcaccaaa cacctgctgt
      541 tgcggggaat cgatcatttc tgcaattgtt tgctgatgca tattccccag ccgatattgc
      601 ggataaacat agtgatcgca ggcgtaaacg tcgccgttgt gctcaacaat caccgagcgc
      661 ccacaggttg gctgatgatg gcaaaccgca cccggcgcac cgacaaaatt ggcaaacgcc
      721 cattcgatat tcatcacgaa aatcttgccg acgtcgcgtt tgatccagtg gtcaaaaatc
      781 gccaccagaa attcaccaaa ttcatcgggg tgcacagacc attccgtcag ttccccctga
      841 atatcaccag gcgcatgtag tttcagtcca tcgctggcag ctgtttcatc agccaggcgc
      901 tcgaccaccg gaataaactg gatgaattcg actcccgcat cgcacaaaaa atcataaacc
      961 tgcaacggtt gctgcgcgct ggtgcggttg acgcagacca gcacgttata gtcgacatga
     1021 tgtttttgca gcagcgtcag ggcacgcatc accagctcat gcgttggtct gccacctttg
     1081 gtcacgcgat attgattgtg gatctcagcc ggaccgtcca gcgataaccc aacaagaaaa
     1141 tgattttctg ccagaaatgc acaccattta tcatcgagca gcacgccgtt agtctggaag
     1201 ctgttactta tcttcctgcc agcaccgtat ttcgcctgta actttacggc acggcggtaa
     1261 aaatccagcc cgagtaacgt tggttcgccg ccctgccagg taaaagccac ttcgttttgc
     1321 ggttcgctgg cagcgatata gtgacggaca tacgcttcca gcatgtcatc gtccatatgc
     1381 gtgactggct tttcgcggta aagggattgt ttttcgagat aaaaacagta gtcacagttc
     1441 agattacaat cggaaccact cggtttcgcc atcacatgaa aagcacgcgt tggaacctgt
     1501 tgcagcatgg tcactccttg cctgaagtca tccttcaata cgttaagggc gaaatcatac
     1561 cgtggggcaa tgagttatta cgggcgttta ttgcgaaggg agggtgacga aatgcacaga
     1621 aaacaaaaaa ccccgccgaa gcggggttca aaattggtcg gcgagagagg attcgaacct
     1681 ccgacccact ggtcccaaac cagttgcgct accaagctgc gctactcgcc gaaatactgc
     1741 tttttgaatt tttagttcaa ttctttaaag tcgtggtgcg agggggggga cttgaacccc
     1801 cacgtccgta aggacactaa cacctgaagc tagcgcgtct accaattccg ccaccttcgc
     1861 attgtcacaa cttctaataa tggggtggct aatgggattc gaacccacga caactggaat
     1921 cacaatccag ggctctacca actgagctat agccaccact acaaatcttg ttacgcggta
     1981 ttactaccac cgcagctcaa gcgccgggac taaatggcgc gcccgacagg attcgaacct
     2041 gagacctctg cctccggagg gcagcgctct atccagctga gctacgggcg cttagcgccg
     2101 ttgcgggggt ggataatacg gacttccccc ccctctgtct agtccctttt taaataaatt
     2161 gcgcgtttgg ttacggtttg tgcgttttgc tgcttattcc tccagtttat gcgctttccc
     2221 gtggcgatta aggccaaaaa ctttataaat cgccgtcacc gccagcataa agatgatgcc
     2281 aacaaacagc gacatacgcg tatcttcatt aaagtacatg ccgatcaaaa cgcaaatcag
     2341 gaatgccatt gttacgtagt tggcccacgg gaacaggatt gagcggaacg gatggctggc
     2401 aatcgccgct ttatgtgcac gccgaaaacg cagctggctt atcaatatca caaaccatgg
     2461 caccatcccc ggaagcacgc tggcactgta gacgtagaca aacacacgct gcggattggg
     2521 aatgatgtag ttcaggcatg agccaattag cagaatagca atagatactg ccacacccgc
     2581 aactggtacg ccgtgacggg aaactttcgc catcgccgcc ggtaactgac ggtttttcgc
     2641 cagtgcgtag agcatacgtc cgcaactgta catgccgctg ttacagccag agagcgcagc
     2701 cgtcagcacc acaaagttga taatgcccgc cgctgcggta ataccgattt tggcaaaagt
     2761 cagtacgaac gggctgccgt tgctgccact ttcattccac gggaagatgg tgacgataac
     2821 gaaaatcgcg cctacgtaga aaatcaggat ccgccacagc actttgccta cggcactgcg
     2881 caacgtcacc tgcggattct tcgcttcacc ggcagtaatg ccaatcagct ccacgccctg
     2941 gtaggacgcc accacaatac acagcgcggt caggaaccct ttccagccac ccgcaaagaa
     3001 accgccatgc tctgtgagat tgctaaaacc aatcgactgc ccgccattgc caaagccaaa
     3061 gaaaatcacg cccaggccaa tgacaatcat cacgataatc gtggtgactt tgatcatcgc
     3121 gaaccagaac tcgatttcgc cgtacaaccg caccgccgcc agattcgcca acgccaccag
     3181 cgccactgcg atcaatgcgg gtatccactg cgccatctcc gggaaccaga actggacata
     3241 aacgccaatg gcggtgattt ctgagatccc caccgccatc cacataaacc aataagacca
     3301 ggcggtgaga taaccaaaga acgggctcat ataacgatgc gcataaacgg cgaacgaacc
     3361 ggtaaccggt tcgaggaaca acatttcgcc cattgaacgc atgatgaaaa agacgaatag
     3421 cccggcgatg atataggcca acaatacgga tggcccggcc catttcaagg tactggcggc
     3481 ccccataaac aggccgacgc caatggtgcc ccccagggcg atgagttcga tatgtcgagc
     3541 ttccagccca cgctgtagct ctggtttgtt atctgccata aatcctcgtg ttgtgtttgc
     3601 atgctttccg gtgttaccgg ttatcgttat gggtacatcg agtgttgcga atgttttcgt
     3661 aattcaggag aaatggcaaa taaagcatta aaaatttgaa tgctttgtgt aataaaaaag
     3721 cagacaggcg acggagtgac cactccgtcg ctttacaaag agaggaaaat cagaggttgc
     3781 cggtgtagtg ccagcgtaaa taacgcagca aacgaagctg acgcttaatg cggctcggct
     3841 gcgaaagcag gcggtagagc cactccagtc ccagcgtttg ccagattttc ggtgcgcgtt
     3901 ttacgtgacc ggtgaaaaca tcgtaagtcc cgccaacgcc catatacagc gcatctggat
     3961 gcaccagacg gcagtcgcgc atgaagatct cctgctttgg cgatcccatc gcaacggtga
     4021 cgatttgcgc tccgctggca tgaatgcgtt caaacagcgc ctgacgctgc tcgggtttaa
     4081 aataaccatc ctgactgcca acgatattca cattccactg gttgcgcagt ttagcttcag
     4141 tttgcgccag cacttcaggt ttaccgccca caagaaatac cggcgtccct tctttgcctg
     4201 cgcgcgccat cagctcttcc cagagatcgg caccggcaac gcgggaaacc tgcgcctgcg
     4261 ggtacttttt acgtactgaa cgtacaacgc tgatgccatc cgcatattta aattcggcag
     4321 cgttaattaa ctccctaacc tcggcgttat cttcaatggt cagcattttt tcagcattaa
     4381 tggcaaccag tgttccctgc ttaagctgcc cgtcagcaaa cagataatcg agggcgtgct
     4441 gcatatcacg ccaaccaatc aactgtaagc cacgcagcgt ataggtcggt gccgtggtgt
     4501 tgttattcat tgttatcctt caacctgcgt ccggagcgat gattttgtac gtttatgaat
     4561 gagtccggcg ctttcaaaaa gccagtacaa cagttttgcg atcatcagac atgcgccgaa
     4621 gaccacgata aaaaagacta cgcgtgagac aaacgaatcc agcccttcac gtgccagcac
     4681 gatcatattg aagatcgccc caaagcagaa actgtgcaat atcgcagcct tatagcgatt
     4741 aggctcgcgg ttgcccagct catacagcca gtcgaaccat ttgatgatca gaccaaccac
     4801 gatcgccccg agcgggatga acaacgcgcc gcccatcacc accagtgagc ctataagcgt
     4861 aggcgagatc gccagtccgg agtggttatt cagcacttcc ctggtaaagt agttggctga
     4921 gttcagcacc atactcgggc gacccggcca cagccaggaa gggataaaga catagaaatc
     4981 gcggacaatt ggagccaggc cctggaagtc gatgttgtcg tagttctgca acagcaacgc
     5041 cagattctcc cacggcgaga aggtgtcgcg agtgagatag agaaacgtat agaacgcttc
     5101 atcgccgctc acattcattc catagcgttt tagcgccagc cagaacatgc ccacaatccc
     5161 cagcacgccc gccgccgcca gcatccacaa cgaaatccag ccgcgaataa tgccaataaa
     5221 caggaagata gcgaatgcga tgatgatatt ggcgcgagtg ccgccgacaa tcatataagt
     5281 cagcaagcca aaggcgaccg tgctgacgag gaaaaacagc cacgctttgc tatcctggcg
     5341 cagaaagtag accaccagca tcgccgggat gaaaaagtaa aagaagcgtt ttaacgccac
     5401 gccggatact tcactggaga agatctgact gtaggagtta agccggaaca gcaaaaagcc
     5461 gttgtgcatg aagaagatgc cgacgcttac cagcgcgatg cccatcagga tcacccacgt
     5521 aagattggtc tccacgcggt tcatggtaaa cagcggacgg cgcggtacat cagcaacgcg
     5581 tttgcgtagg cgggttttgt aggtgacata gtaaaccgcg tagaagcagc ccgcagaaag
     5641 caacgcctgc aacaagattt ctggcggcgc gacaccaaca tcaaagcgaa ataccagcac
     5701 gctggtcagc gggaagccga agaaaaaggt gagcaaaaac agcaatgaaa agaagacatt
     5761 gaagttaaag cgcacacggc gaaactcaaa ccaagtcagc gtggcaataa acagcgtgca
     5821 gagcagccag accacaaaca ggccactgaa ttgcagcaga ctcatgcgac ctccccggcg
     5881 gcaatcgcca acgcccgctg ccagccttgt agatagttag ggctaaagaa ggcaatggtg
     5941 tttttatcca ccgacgccaa ctggcgctgc gcttcacgca caatatcctc gttgagatcg
     6001 tcggtagtaa acagcaccgg caaatgctgt tccgtcatat cctgccagaa cggattttcc
     6061 cggttaagca cacaaggaat gcccgcctga atcagtaagc aaagcgtacc aatgccctgc
     6121 tggcgggcaa aaataaagta accaagatcg cactgacgaa gtagcgccag ataggcgtca
     6181 aattccagtt tttcgctcaa aatttgcaga ttttcttcgc tgaataactc cagccccgcc
     6241 tgacgaactt cctcaatgta cgcttcgtta ttaggcggat atcccatcgg caccaccact
     6301 tttaccgtat cgccaaattg ctgatgaacg gcgcgcaagg cagcaatatg gtcattgctg
     6361 cggtcaccgg agttccccac cagaatggtc attttccctt cacgttgccg atcgttcgcc
     6421 atcgtattga gagaagggtc catccgcgtc gggaagtaca gcagttcgcc ccgcaccttt
     6481 ggatgcgttt tggcaaaaaa gctcaaatca ccgcgggtgg caaatacaca gccgactcgc
     6541 ttttgcgcca ggcgacgtag cgggtaaaaa agcttatatc tcaagccact ggaaagctca
     6601 tacaggtctg ccccccagat atgccagaaa aactggctgg gcttaatgcc accactcagc
     6661 agagccagcc acagtgtggg attgaactga ccgtggaaaa aaaatcgctg ctgacggtta
     6721 gcttttgctt tcgcgatgac cgcttccgcc agcgattttt tcccagggaa aaattgcaca
     6781 gaaagcgccg gacagctatc acttaagccg tcgtccttgc caacaaccat aaactcgcgc
     6841 gcgtgctcgc tcgtcgcggc cagcgcgtca ttgaaaaacc gcaaaacggt tcggttatgg
     6901 tgagggatat ccgatcccag tacgtgaatc agtacagtca tgcccgccta cgccagagta
     6961 aaaacacgcc acaacaaaga gaaaaataga cgatataagt tgccatatat gcctgcgccg
     7021 cgcccagtgc accatgcgca gggattagcc agtgggcaaa taccatcaat aaagtgaact
     7081 ggctgacttc cgccagaata taaaaccgca gtgacgcttt ggcgatcacc agataaccaa
     7141 agacataagc gcccactttt aacacatcac ccactaactg ccaggcaaag agatcgcgca
     7201 tagcggtaaa tttattcgac aacagcaacc agatagcaaa atcacgcagc aaccagacgg
     7261 taaaactcgc cgccgccact gccggtaaga cgaattttag cgatttaacc acttcccggg
     7321 tgatatcgcg cttttccgtt agccgcgaca acgtgggcag caaatatacg ctgaacgatg
     7381 ccgtaatgaa ttgcaggtag gcatcggaaa tactgctcac cccttgccag atccccactt
     7441 catcccagct atactgcgcc gccagcagtt tacgcatcat gatgtaagca acaggcaagg
     7501 tcaccgacgt aatcaacgcc atgagcgtaa atttgctcaa ctgccctgcc agaccgttat
     7561 cccagctggg tttcagatag cttaacggga tgacaccacg tttgatcaac atgatggcgg
     7621 caggaattac caccagcgcg ggaatcagcg ccagacccag caacgcccct tcataaccgc
     7681 ccaaacggta actgacgtag tacgcgagaa cgccaatcaa gctgccgaca atcagcgata
     7741 acgcattacc tgcggcatcg cgaaagcctt tcatcagcgc cagtaacagg ttgccccagg
     7801 cgatccccat ttgcaccagc gccactaaac gcaccagccc ctgatagtcg gtattaccaa
     7861 acaatccctg gctgattggc gcagctgcca gcacaaaaac cagcgccatc agcgtagaga
     7921 aaccaagtac catcgctgat gaagtgccga ccacgcggcg cagctgttgc ggattatcat
     7981 ggtactgggc aacgtatttg gttacaccgt taaagatgcc agccccggca agcacgccga
     8041 gcacggtaat caactggcgg aaatttgccg ccagcccaag ccccgccgga ccaaatgaca
     8101 ccgccagcaa cttaccgacc agtaacccgg caccaatctt gaccagtgta ctggccgccg
     8161 tccacaagga cgcttttgcc aacgacatat caggagaagt agttcaacaa agtcgcaatt
     8221 accgtacgct gattgacggg cgacaggttg tagaacagcg gcaggcgcag caggcgctcg
     8281 ctctctttgg tggtgtagcg atcttcaccg tggaactcac caaagtgttc ccccgcaggg
     8341 caaccgtgca gcggaatgta atgaaacacc gccatgattt ccgcttcttt cagaaagtta
     8401 atcaacgcgc tccggtcatc aatatcccgc agtttaatgt agaacatatg cgcgttctgc
     8461 acgcagccat cgggaatcga cggcagctcg atacgcccgg ctttcgccag aggcgctaac
     8521 gcatcgtagt agttttgcca cagcgccaga cgttgctggt tgatacgatc cgctgcttcc
     8581 agttgcgccc acaggtatgc agcttgcaga tcggacatca aatagctgga gccaatatcg
     8641 cgccaggtat atttatcgac ctgaccacgg aagaactggc tgcggttagt gcccttttca
     8701 cggatgatct cggctcgttc gattaacgct ttatcgttaa tcagcgtcgc gccgccttca
     8761 ccacccgccg tgtagttttt ggtttcatgg aagctaaagc agccaatatg accaatggtt
     8821 cccagtgcac gccctttgta agtggacatc acgccctgag cggcatcttc caccacaaac
     8881 aaattatgct ttttcgccaa cgccataatg gtgtccattt cgcaggccac acccgcgtaa
     8941 tggaccggca cgataacgcg cgttttgtcg gtgatcgctg cttcaatcaa cgtttcgtcg
     9001 atgttcatgg tgtccgggcg aacatccaca aagacgattt tcgcgccacg cagcacaaag
     9061 gcattggcgg tggagacaaa ggtgtagctc ggcatgatca cttcatcgcc aggctggata
     9121 tcgagcagca gcgccgccat ctccagcgaa gcggtgcagg acggcgtcag taacactttg
     9181 gcgctgccaa aacgttgctc cagccactgc tggcagcgac gggtaaaacc gccatcgcca
     9241 cacagtttgc cgctacccat tgccgactgc atatagtcga gttcggttcc caccaccggc
     9301 ggtgcgttaa atggaatcat gtgatcacct gtataaccag tacgcggtgc tttctacatt
     9361 cgcaccactt tgtatgtatc gtttaagcgc ggcggtgttg cccatttggg tcgccacccg
     9421 caaagttgtt ttaccgcgag catacgccca gtttagcgcc gtttgcatca gctcagcacc
     9481 tgcaccgcgt ccagccagca ggccaattcg cgcatctgtc gcattgagtt cccgtaaaga
     9541 gacatagccg cgaatatcgc cggacgccgc acgtagaatc agacattgat gatcaaaggt
     9601 gccgcgcacg gcattttcaa tccactgtgc ataaaagcga ccgctggcgt caggcgcata
     9661 ccacggcgca cgaaaacggc tttgcgcaaa tgcggcgcta gctaactgac gtaatgcggg
     9721 aatatcggtc tcttgtgcca cgacagcacc gctatcactg acattgttca cgggtagcgc
     9781 caaatcaact tcaccttcta ccagggagaa tcccagctgt tgcagggcat ccagttcacc
     9841 cgtatttgat gccacaattt tggcctgcac ccgtgaccac ggcgctaacg cgtctggcgt
     9901 caggagcggt gcttcagacg taatgcgcac gatggcgctg ttaacaccaa agaaggcgtt
     9961 ttcccaggtt agtggctcaa tactggcgcg gacgggcacg aagtaactcc agcagatatt
    10021 ggccatagcc agttttcgct aatgaactgg cagcacgctt cacaccctcg tcatcgagcc
    10081 agccgttacg ccaggcgatc tcttccaggc aggcaatctt aaagccctgg cgtttttcta
    10141 ctgtctgcac aaaggtactg gcttcaatca ggctgtcgtg agtgccagtg tccagccagg
    10201 caaatccgcg cccgagcagt tcaacggtca ggttgcccgc ctcgaggtac atctggttga
    10261 tggaggtaat ctccagttca ccacgctccg acggcttcac ctgctttgcg tactccacga
    10321 ctttactgtc gtagaaataa agcccggtca ccgcccagtt tgacttcggc tgttttggct
    10381 tttcttccag cgagatagcg cggaaattgt cgtcaaactc caccacgcca aagcgttccg
    10441 ggtccatcac ctgatagcca aataccgtcg ccccttccgt gcgcgccgca acatgacgca
    10501 gcttcggact gaagccctga ccgaagaaga tgttatcgcc cagcaccaga caagaaggtt
    10561 caccgttgag gaaggtttca ccgatgataa aggcctgcgc cagaccgtcc gggctgggct
    10621 gttcggcgta ttccagctgg ataccgaact cactaccatc gcccagcagg cgctggaaat
    10681 aacctttatc ttccggcgta gtgatgatga gaatttcgcg gataccggcc aacatcagca
    10741 ccgacagcgg atagtaaatc attggcttat cgtaaatcgg caacagttgc ttcgatacgc
    10801 cgcgcgtaat cggatgcaat cgggtgccgg aaccgcccgc caggataata cctttcatgt
    10861 ttgcctccgc tgaaaattag cctttcagac ctaaacgctc gccctgatag ctgccgtcct
    10921 gcacctactt ccaccagctt tcattagcca gataccactg caccgtttta cgcattccac
    10981 tttcaaaggt ttcctgtggc agccagccaa gttcacgggc aattttcgaa gcatcaatgg
    11041 cataacgcag atcatgcccc ggacggtcag cgacaaaggt gatcaagtca cgatagtgca
    11101 ccacgccgtg cggcttgttc ggagccagtt cttccagcag ctcgcaaatg gtttccacaa
    11161 catcgagatt cttacgctcg ttgtgaccac caatattata ggtttcaccg actttcccgg
    11221 tggtcgccac gcaatacagc gcgcgggcgt gatcttccac atacagccag tcacggattt
    11281 gctgcccgtt gccatatacc ggcagcggtt tacccgccag cgcgttgagg atcatcagcg
    11341 ggatcagttt ttccggaaag tggtaaggac cgtagttatt cgagcagttg gtgataagcg
    11401 tcggcagacc gtaggtccgc agccaggcgc gcaccagatg gtcgctgctg gcttttgacg
    11461 cggaataagg gctgctcggc gcatacggcg tggtttcggt gaagaaatca tccgtcgagt
    11521 gcaggtcacc atatacttcg tcggtggaga tatgatgaaa acggaacgct gattttttat
    11581 cttccgtcag cgtattccag taagcccgcg ccgcttcaag caatgtataa gtcccgacaa
    11641 tgttggtttc aataaacgct gccgggccgt caatagaacg gtcaacatgg ctttcggctg
    11701 ccagatgcat gacacagtct ggctgatgct cagtgaatac gcgtgccagt tctgcccgat
    11761 cgcagatatc aactttctca aaggcaaagc gatcgctttg cgcgaccggt gccagcgaca
    11821 tcaggtttcc ggcgtaggtc agcttatcga ccactaccac cgcgtcgctc gtttcgttga
    11881 tgatataacg caccagcgcc gagccaataa acccggcacc acctgttatc agaatttttc
    11941 tcatcagcgc cagactcctt tggcatcgac gacatactgc tgatggacat tgtcgccatt
    12001 gataacttta aactgactat gatcgaccag catcaccagc acgtctgccg ttgccagcgc
    12061 ctcgtcaagc tgcgccagag tacaaagccc ggtcagtttt ttcggcaact ggtggatgtt
    12121 aggctcaaca accagagttt cgccgctatg ccactgggcg atcagttcag cgatttccat
    12181 cgccgggctt tcgcgcaggt catcaatatt cggtttaaac gccagaccaa agcaggcgat
    12241 tttcagttca ctggcgcgtt tatcggtagc cgccaggcaa tcagccaccg ccgctttcac
    12301 ctgatcgata acccagaacg gtttgtgatc gttcacttcg cgcgcggtac ggataagccg
    12361 cgcctgctgg gggttctgtg ccacgataaa ccacggatca acagcaatgc agtgaccgcc
    12421 cacgccaggg ccaggctgaa gaatattaac gcgagggtga cgattcgcca ggcgaatcag
    12481 ttcccagacg ttaatcccct gatcggcaca aatcagcgac aattcattag caaaagcgat
    12541 attcacatcg cggaagctgt tttcggtgag cttacacatt tccgccgtcc gcgagttagt
    12601 gacgacacac tcaccttcga ggaaaatttt gtacagttcg ctggcgcggg tcgaacaaac
    12661 cggcgtcata ccaccaatca cgcgatcgtt tttaatcagc tcgaccataa cctggcccgg
    12721 taacacgcgt tccgggcagt aagcaatgtt gacgtccgcc tgctcgccca cctgctgtgg
    12781 gaaagtgaga tccggacgca tctctgctaa ccattctgcc atcttctcgg ttgaccccac
    12841 cggcgaggtg gattcaagga tcaccagcgc gccttttttc agcactggcg caatggagcg
    12901 agcagccgat tcaacgtagg tcatatctgg ctcatgatcg cctttaaacg gcgtgggtac
    12961 agcaatcagc caggcatccg cttcaactgg cgtcgtgctc gctcgtaaaa aaccgccttc
    13021 tacggcagtt tttactacgc tcgccaaatc aggctcgacg atatggattt cgccacgatt
    13081 gatggtatca accgcgtatt ggttgatatc gacaccaatc acctgttttt gccgtgaggc
    13141 aaacgctgct gctgtaggca gcccgatgta acccagtccg ataacagaaa tggtcgcaaa
    13201 actcatagtg atatccgatt attttttaac gcttccagaa tgcgagagca tgcctgacca
    13261 tcaccatacg ggttatgggc gcggctcata gtttgatatt cgttttcgtc ttttaaaaga
    13321 cgcgtcactt cctcgacaat tcgctgctta tccgtgccta ccagacgcac cgtacccgcc
    13381 gtcaccgctt ccggacgctc agtggtatcg cgcatcacca gcaccggttt ccccagcgaa
    13441 ggcgcttctt cctgaatgcc gcctgagtcg gtcaaaatca gccaggcgtg gttcatcaac
    13501 cagacaaacg gtaaatactc ctggggatcg atcagaatga catttttcac atgccccaga
    13561 atgcgattga ccggctctct gacgttcggg ttgagatgca ccggatagac aatctggatg
    13621 tcctggtgcg tggtggcaat gtctgccaac gcgtggcaga tttcttcaaa accacgaccg
    13681 aaactctcac gcctgtgacc ggtcaccaga atcatctttt tatcggggtc gataaacggg
    13741 taatttgccg ccagttctga acgcagcgtg tcgctgctca tcacctgatc acgcacccat
    13801 aacagtgcat caatgactgt attaccagta atgaagattc ggctatccgc aacgttttca
    13861 cgcagcaagt tttgccggga agtttcggtt ggagagaagt gatacatcgc cagatgcccg
    13921 gtcaatgtac ggttagcctc ttccggccac ggcgaataga gatcgcccgt gcgtaaacca
    13981 gcctcaacgt gaccaacagg aatacgctga taaaacgccg ccaggctggt tgccagcgtc
    14041 gttgttgtgt cgccgtgaac cagcacgacg tctggtttga actcggcaag aataggtttt
    14101 agcccttcca gaatccgaca ggttatctct gtcaggccct gtcctggctg cattatgttg
    14161 agatcgtagt caggtacaat ggaaaagagt ttcagcacct gatcgagcat ctcccgatgc
    14221 tgcgcagtga cgcaaacttt agcctcaaaa aaaggagctt ttgccaacgc atgcaccaac
    14281 ggagccatct tgatggcttc cgggcgcgta ccaaatacag tcagtacttt cacatcgatt
    14341 ctcttcgaat aagcggcgag cgcctttgcg ctcgccgcag cagtgttgct atttcgagca
    14401 acggcgggtt aatgcgacac cagccccgat cagccccccg acaatgcccc acataatcat
    14461 caggaaggca cgacgtgggc tatcgcgttt taccggttct tccggcgtac gcaaatagcg
    14521 ataggtctga aaacgcggat ccagggttgg accaacattc agggtgttta acatggcccg
    14581 attctgatca tagtcgagat caaaggccgg accgacggcc tgtaaatttt ccagtcgagc
    14641 ctggagcatt ggacgcccaa gcaggaacat ttctgaatca ggtaattcct cggcaggcac
    14701 atctgtcgca ctgcgcgaaa tattatgctg ctcagcaatt ttcagcgcct gctcaatgct
    14761 gttcatccgg cggtcgtaga tggctttcgc cacctcttcc tgacgcttca cctgagcttt
    14821 catctggatg gtgcgtgccg cccatgcgcc tttcagctca tcattcagat ggctggctgc
    14881 acgctggctg gcaaaagcaa catactgacg taacaggtta ttagcgtcag gcgcggtttc
    14941 ggcaataagc ttcacgctgt cattgaccgc gcgggtaaag tctccgggga taaactggat
    15001 gttgttaatc atttcatcca gcaacgccgc atcggctttg ctgttgccca ccatccgctg
    15061 tttgtaatag tcggtttgca gccagaactc tctgcgggta tcccacgagg ccagttgcat
    15121 aacaaactct ttataggctt cgtccatgac cgatggttga tcggcagaag ccatgtttga
    15181 acggacatcc aggttacgca aaaattgctg ctgcgagtaa tatcccccca gcatattcac
    15241 cgttggacga tcggtaatcg ccgtcgagct ccactcctga cgagcaaaaa aagtatacgc
    15301 cagcgcgatt aacgcaaacg ccagccccat gccaataatc catagcttcc cagcccacaa
    15361 ggtacgaaac aacccacgaa tatccagttc attttcagcg tcttcggccg gtttcccagg
    15421 cattggttgt gtcatcacat cctcatttat ttggttaaat tggggctgcc accacgattt
    15481 ctacgcagtc tgcgttttac gcgcttaata aagcgagcaa ctttccaggc acgcttaatg
    15541 caatatccat agaggaagaa tgctagcaaa aagagcacca gcatgaccca ctccgggaca
    15601 aaatgagaat attctgccag cacgccaatg gaagcgagca gtgctgcggc aagggtaatc
    15661 agcacaaacg cctgacggga agtaaacccg gcacgcatga tcaaatggtg aatatgctga
    15721 cggtcaggag agaatgggct catgccttta cgcaggcgac ggtacataat cgccaccata
    15781 tccattagcg gaatggcgat tatccacaaa gcggtaaccg ggctgatggg atgggttttg
    15841 ccctgggtcg tttcgagcag gatccagata acggtaaaac caatcagcgt actgcccgca
    15901 tcacccataa agactttgta gcggcgaccc aggataccaa ggttaagcat gatgtatggc
    15961 aggatggcgg cgatcatcgc aaagcaccag attgcgaggc tggtttgccc gtcgaaccac
    16021 aaaatcatac cgattgctgc aaacgagacg caggacaacc cgcccagcaa gccatcaatg
    16081 ccatcaacca tgttgaacgc attaatggcc gcccagacgg caaatagcgt caggaagtaa
    16141 ccaaacggtc cgagcaccat ctcccaggag ccaaagatat aacccaggct actgagataa
    16201 agtttgccga acaccatcat aacaatgcca acagcggcct gtatggtggc acggattttt
    16261 acgctgatat caaaacggtc atccagcgcg ccaatgaaaa caagcacacc ggcacaagcg
    16321 agatagagag atgcatgcgg aatatagtaa tcgacaattc cgaacgtgaa gcaaatccct
    16381 gcgtaaaccg aaatcccccc aacgagaggt atcaatccct ggtgacgttt gcggaagttt
    16441 ggtttatcca ctaaaccgac tttttttgcc accttacggg caaaaaacag aaacagtgtc
    16501 gtgaataaaa aaatactgat gagatcagta ctcactgtca gtaaattcac aatgcatgct
    16561 ctcagagaaa attattagca gaagtataac cacgaagacc tttattcaga agggaaagtc
    16621 cgttccgaac ccaccagccc tgtgcaaaaa ttaaccattt gatatgcaaa ttgcataaca
    16681 tgccagcaaa ttccaggaat tttcctaaca tcgccagcgc ggcattaaga ttacagatat
    16741 aaaagcaaaa cgccacgtaa acacgtggcg tttttggcat aagacaaatt tatgagcgtt
    16801 tcatcatttc gaagaaatcg tcattggtct tggtcatggc cagtttatta atgaggaatt
    16861 ccattgcatc gatttcgccc atcgggtgaa tgattttgcg caggatccac attttctgca
    16921 gttcttcctg agtcgtgagc agctcttctt tacgggtacc ggaacggttg tagtcgatag
    16981 ccgggaagac gcgtttttca gcgatcttac gagagaggtg cagttccatg ttgcctgtac
    17041 ctttaaactc ttcgtaaata acttcgtcca ttttagaacc ggtatcgata agcgccgtcg
    17101 cgataatggt caggctgccg ccctcttcca cgttacgcgc cgcaccgaag aagcgtttcg
    17161 gacgatgaag ggcattggcg tccacaccac cggtcaacac tttacctgac gccggaacaa
    17221 cagtgttgta agcgcgcgcc agacgagtga tggagtcgag cagaatgata acgtctttct
    17281 tgtgctcaac caggcgtttg gccttctcga tcaccatttc cgcaacctga acgtggcgag
    17341 atgcgggttc gtcaaaggta gaagcaacaa cttcaccttt taccagacgc tgcatctcgg
    17401 ttacttcttc cggacgttcg tcgatcagca gaaccatcag cacacaatcc gggtggttgt
    17461 aagcaatgct ctgagcaatg ttctgcagca gcatagtttt accggctttc ggcggtgcca
    17521 caatcagacc acgctgacca cgaccgatag gtgatgccag atccagtacg cgagcggtta
    17581 aatcttccgt agaaccgtta ccacgttcca tacgcagacg agagtttgcg tgcagcgggg
    17641 ttaagttctc aaagaggatt ttgttgcggg cgttttcagg tttgtcgaag ttaacttcgt
    17701 taactttcag cagcgcaaaa tagcgttcac cttctttcgg cgggcgaatc ttaccagaga
    17761 tggtatcacc agtgcggagg ttgaaacggc ggatttggct aggggaaacg tagatgtcat
    17821 caggaccggc gaggtaggag ctgtctgcgg aacggaggaa accaaatcca tcctgcaata
    17881 tctccagtac gccatcacca aagatatctt cgccactctt tgcgtgctgc ttcaggatgg
    17941 caaaaataat gtcctgctta cgcatacgag ccaggttttc cagccccata ttttcgccga
    18001 gagtgatcag ctcagaaacc ggcgtattct ttaattcggt aagattcata gtggtgtgag
    18061 ttcttaaact tggggtaaat ctcgaactta atgttgtgaa tggtatggca ggatcatcca
    18121 tgcctgttta cggtcatcga ctcatgtctt ttcgctgcct ggtcacagga gagtacgcag
    18181 aactgaaacg acaagacgga ttgagtgacg agccagaaat ctgttcactt cgcatttaag
    18241 ataaaacggg aagcgttgga aattacaaga ttcaaactta ataaggtatg tttaatacga
    18301 agtcaacact aagttagcat gactcacgcc gggcgtccag tttttagcga cggggcaccc
    18361 gaacatgaaa ttcccttacg ccaggttagc gtcgaggaac tctttcaact gacctttaga
    18421 cagtgcaccc actttggttg ccgccacttc accgtttttg aacagcagca gagtcgggat
    18481 accacggatg ccatatttcg gcgcagtgcc agggttttga tcgatgttca gttttgcaac
    18541 ggtcagtttg ccctgatatt cgtcagcgat ttcatccaga atcggggcga tcattttgca
    18601 cggaccgcac cactctgccc agaaatcgac gaggatcgcc ccgtccgctt tgagtacatc
    18661 cgtgtcaaaa ctgtcgtcag tcaggtgaat aattttatcg ctcatatata actccacagg
    18721 aataagcctg gcgtgttggt ttcgttgttg gtgtaacatt aaccaactaa aggttgactt
    18781 tatttcaccg gatacgcttt cgtaaagcaa tagtaagctg atattctacc acactatgag
    18841 caaaacacat ttaacagaac agaagttttc cgacttcgcc ctgcatccga aggttgtaga
    18901 agcccttgaa aaaaaagggt ttcataactg tacgcccatt caggcactgg cccttccgct
    18961 gacgctggcg ggtcgtgacg tagccgggca ggcgcaaacc ggtaccggga aaacgatggc
    19021 gtttcttacg tcaacgtttc attatcttct ctctcatcct gcgattgccg atcgcaaggt
    19081 gaatcaacca cgtgccttaa ttatggcacc gacgcgtgaa cttgccgtgc agatccatgc
    19141 cgacgcagaa ccgctggcgg aagctaccgg cctgaagctg ggtctggctt acggtggtga
    19201 tggctacgac aaacagctga aagtgctgga aagcggcgtt gacattctga ttggcactac
    19261 ggggcgttta attgactacg ccaagcagaa ccacattaac ctcggtgcca ttcaggtggt
    19321 ggtactggac gaagccgatc gcatgtacga tctgggcttt attaaagata tccgctggct
    19381 gttccgccgt atgccgcctg caaaccagcg cctcaacatg ctgttctccg ccacgctttc
    19441 gtaccgggta cgtgaactgg cgttcgagca gatgaacaat gccgaatata ttgaagtgga
    19501 accggaacag aaaacgggcc accgtattaa agaagagctt ttctaccctt ctaacgaaga
    19561 aaaaatgcgt ttgctgcaaa cgctgatcga agaagagtgg ccagacagag cgattatttt
    19621 cgccaatacc aaacaccgtt gtgaagagat ctggggccac ctggcggcag atggtcatcg
    19681 tgtcggtttg ttgacaggcg atgtcgcgca gaaaaaacgt ctgcgtattc ttgatgaatt
    19741 tacccgtggc gatctggata ttctggttgc caccgacgtt gccgcgcgtg gtttgcatat
    19801 tccggcagtg acgcacgtct ttaactacga tttacccgat gactgtgaag attacgttca
    19861 ccgtattggt cgtacaggtc gcgcaggcgc aagcggtcac tctatcagcc tggcgtgtga
    19921 agagtatgca ttgaatttgc ctgctattga gacctatatt ggtcactcaa ttccggtaag
    19981 caaatacaat ccggacgcat tgatgaccga tctgccaaaa ccgctgcgcc tcacgcgccc
    20041 acgtacaggc aatggtccgc gtcgtactgg cgctccgcgt aatcgtcgtc gttcaggtta
    20101 aataaaatgt catactcaaa atcattcaaa ctgtatcaag atggcaagag aatgaatccc
    20161 gatgagcata ctgtagtaag tgattcaggt gaaagaatgc agccaacaca gagacagatt
    20221 gaaggatgaa gagtatgggt tccacctcgt cgctgtatgc agccattgat ctcggttcga
    20281 atagttttca tatgctggtt gtgcgcgagg tggctggaag catccagacg ctgacgcgaa
    20341 taaaacgcaa agtgcgtctg gctgctggcc tgaatagcga aaatgccctg tctaatgaag
    20401 caatggagcg cggttggcaa tgtctgcgcc tgtttgctga acgtctgcaa gatatccctc
    20461 cctcgcaaat tcgcgttgtc gctacggcga cattacgtct tgccgtcaat gcgggtgatt
    20521 ttattgccaa agcgcaggaa atcctcggtt gtccggtaca ggtgatcagc ggtgaagagg
    20581 aagcacgtct gatttatcag ggcgttgctc acacaactgg cggtgccgat cagcgcctgg
    20641 tggtggatat aggcggtgcc agtactgaac tggtaaccgg cacgggtgca caaaccacct
    20701 cgttgttcag cctgtcgatg ggctgcgtca cctggctgga acgctatttt gccgatcgta
    20761 atctggggca ggaaaatttt gatgctgcag aaaaagcggc acgcgaagtg ttacgtccgg
    20821 ttgccgatga attacggtat cacggctgga aagtgtgcgt tggtgcttcc ggcaccgtgc
    20881 aggcgttaca ggaaatcatg atggcacagg ggatggatga acgcattacc ctggaaaagt
    20941 tgcagcaatt gaaacagcga gccattcatt gcggtcggct ggaggaactg gagattgacg
    21001 ggctgacgct ggaacgtgcg ttagtgttcc cgagtggtct ggcgatcctg atcgccattt
    21061 ttaccgaact gaatattcag tgtatgaccc tggcgggcgg tgcgctgcgt gaaggcctgg
    21121 tctacggcat gttgcatctg gccgtcgagc aggatattcg cagccgtacg ctgcgtaata
    21181 ttcagcgccg ctttatgatc gatattgatc aggcgcagcg cgtagccaaa gttgcggcta
    21241 acttcttcga tcaggtggaa aaggaatggc atcttgaagc aataagccgc gatttgctca
    21301 tcagcgcctg tcagcttcat gaaatcggcc tgagcgttga ctttaaacaa gcgccgcaac
    21361 acgctgctta tctggtgcgt aatctggatc ttcccggttt tacccccgca cagaaaaaat
    21421 tgctggcgac gctactgctc aaccagacta atccggtcga tctctcatcg ctgcatcagc
    21481 aaaatgccgt accgccgcgc gtcgcagaac aactctgccg tttactccgc ctggccatca
    21541 tttttgccag ccgtcgccgt gacgatctcg tgccagagat gacattacag gctaaccatg
    21601 aactgttgac cttgacgctt ccgcaaggtt ggctaaccca acatccgctg ggtaaagaga
    21661 ttattgctca ggaaagccag tggcagagct atgtccactg gccgctggaa gtgcattaat
    21721 gagtaagtgc cggatgcgat gctgacgcat cttttccggc cttgattatt tccctcgttt
    21781 tgccgccatc atcgctttca gattcgccag atggctttgc cctttctgca tccgttcttc
    21841 ggcgctgacc actttgcgct cctgttccca aatcagatca tcctgcggca gctccagcaa
    21901 aaagcggctc ggctccgggc gcaccagctc gccgtactga cggcgttctt tacacagcgt
    21961 aaaggtcaat tccttctggg cgcgggtaat gccgacatag gccagccgcc gctcctcatc
    22021 gatattatct tcatcgatgc tactctggtg cggcaaaaac ccttcttcca taccgaccat
    22081 gtagacataa ggaaactcca gcccttttga cgcgtgcaga gtcatcagtt gcacctgatc
    22141 cagctcttct tcactctcac cacgctccat catgtcgcgc aaagtaaagc gcgtcaccac
    22201 ctgggtgagc gtcatcggct catccagttc gctgccttcc agcatctccg tcatccagct
    22261 aaacagttgg ttgacgttct tcatgcgcat ttcggcggct ttcgggctgg gcgatgtttc
    22321 gtacagccag gattcataat ccatgccgtg gatcagatcg cgcaccgcgg caatcggctc
    22381 ccgctccgcc agacgctgga tttctgccaa ccagtgagta aagcgggtca atgcttcata
    22441 accacgtccg ctaagcgtct gactcaggcc catatcaaag ctggcggtaa acatgctttt
    22501 attgcgcgtc atcgcccact cacccagctt tttcagcgtc gccgggccaa tctctctctt
    22561 cggcgtgtta acgatacgca gaaatgcgct gtcatcgtcc gggttagtca gcacgcgcag
    22621 ataagccagc aagtccttga tttcaggacg agagaaaaac gacgtaccac cagaaatttt
    22681 gtacgggatg cggttttgca tcaggaattt ttcaaacact cgcgactgat ggttaccgcg
    22741 ataaagaata gcgtaatatt tgtactgcgt tttattgacg aagtgatgcg caatcagttc
    22801 accagtgacg cgctcggctt catgttcttc gttattcgcg cttaaaactt taagctctgt
    22861 gccgtaaccc agttcggaga acagacgctt ctcaaagacg tgcgggttat tggcgatcag
    22921 gatgttcgcc gctttcaaaa tacgtccgga agagcggtag ttctgctcaa gcttaatcac
    22981 cttcagcgcc ggaaaatcct gactcagcag caccaggttt tgtggacgtg cgccgcgcca
    23041 ggagtagatc gactggtcgt catcgcccac cacggtaaag cgcgcgcggc tgcccaccag
    23101 cagtttcacc agttcatact ggctggtgtt ggtgtcctga tactcatcca ccagcagata
    23161 gcgaattttg ttctgccagc gctcgcggac ttcttcattg cgttgcagca gcaacgtcgg
    23221 caataaaatc agatcatcga agtcgagaac attgcacgct ttcaggtgtg catcatacag
    23281 cccataacaa tgggcaaaaa tacggtcccg ctcgccaatc gcactggctg ccgcctggga
    23341 cggtgttttg agatcgttct tccagttaga gatagtcgaa atcaactgtt gcaggagaac
    23401 tttgtcatct tcaatcagcc cttcggtcaa ctctttgagc aacgccagct gatcggtatc
    23461 gtcaaacagc gaaaagttcg ccttcatccc cagcgccgca tactcacgct tgatgatatc
    23521 cagccccagc gtgtggaagg ttgagatcat cagcccacgc gcctctttgc gacccagcgt
    23581 ctgtccgaca cgctctttca tctcgcgcgc cgccttattg gtaaaggtca ccgccgcgat
    23641 atgtcgcgcc tgataaccgc aaccgcggat cagatgggcg attttattgg tgatcacacg
    23701 agttttaccg gaacccgcgc ccgccagcac caggcagggg ccggtaacga attcgacagc
    23761 ttgttgttgg ccggggttta gacgcatagg tgtattgctc aatcttcgaa cggggggagg
    23821 attgtagcag aatcgcattt gaatgtgacc gcgtgtaagc cgctaaccgg ttggctgcgg
    23881 atgtttaaat cagagaggga agaccgaaac cggagttcat cgtgaatcca ttagacttag
    23941 aaaatatcgg gtcgtaacgt tgtgttatta ctttttcaga gtttactaag gagaggtgta
    24001 ctcgtggcga ttaatttcag tcctaaggtt ggtgaaatac tggaatgcaa ctttggtaac
    24061 tatcctgtta gccagaatgg acagttcagc accacgtatt acgatggccg cattcctcct
    24121 gaaatgataa aaaacaggtt agttg
//
LOCUS       DAJVUN010000051        23285 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.051, whole genome shotgun sequence.
ACCESSION   DAJVUN010000051 DAJVUN010000000
VERSION     DAJVUN010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23285
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.051"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..674)
                     /locus_tag="OQQ76_001686"
     CDS             complement(<1..674)
                     /locus_tag="OQQ76_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
                     /protein_id="HCS1968224.1"
                     /translation="MRNKLSFDLQLSARKAAIAERIAVHKIARSKVSVFLMAMSAGVF
                     MAIGFTFYLSVIADAPSSQALTHLVGGLCFTLGFILLAVCGTSLFTSSVMTVMAKSRG
                     VISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGVAVLHCAEGKMHHTF
                     TESVSLGIMCNLMVCLALWMSYCGRSLCDKIVAMILPITLFVASGFEHCIANLFVIPF
                     AIAIRH"
     gene            complement(696..2708)
                     /gene="hyfR"
                     /locus_tag="OQQ76_001687"
                     /pseudo
     CDS             complement(696..2708)
                     /gene="hyfR"
                     /locus_tag="OQQ76_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416986.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HyfR"
     gene            complement(2738..3151)
                     /gene="hyfJ"
                     /locus_tag="OQQ76_001688"
     CDS             complement(2738..3151)
                     /gene="hyfJ"
                     /locus_tag="OQQ76_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 assembly chaperone HyfJ"
                     /protein_id="HCS1968225.1"
                     /translation="MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGV
                     IDCLNVAFRCPLTENEDWLAQVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFALLA
                     DDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA"
     gene            complement(3144..3902)
                     /gene="hyfI"
                     /locus_tag="OQQ76_001689"
     CDS             complement(3144..3902)
                     /gene="hyfI"
                     /locus_tag="OQQ76_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfI"
                     /protein_id="HCS1968226.1"
                     /translation="MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGC
                     NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH
                     KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
                     QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRLGREICDRLLRHLSDD
                     PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD"
     gene            complement(3899..4438)
                     /gene="hyfH"
                     /locus_tag="OQQ76_001690"
     CDS             complement(3899..4438)
                     /gene="hyfH"
                     /locus_tag="OQQ76_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit H"
                     /protein_id="HCS1968227.1"
                     /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG
                     ACTCPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKA
                     DLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLRAQASVCPECKQ
                     RATLINDDTDVPLVAKEQL"
     gene            complement(4448..6163)
                     /gene="hyfG"
                     /locus_tag="OQQ76_001691"
     CDS             complement(4448..6163)
                     /gene="hyfG"
                     /locus_tag="OQQ76_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfG"
                     /protein_id="HCS1968228.1"
                     /translation="MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINL
                     LPDVVHYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSR
                     EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL
                     RPEPTTDSETYAFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV
                     HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI
                     LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGG
                     VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQDIGILDRQIARDYSPV
                     GPLIRGSGFARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA
                     LDNMLDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW
                     PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRN
                     RSPLK"
     gene            complement(6153..7733)
                     /gene="hyfF"
                     /locus_tag="OQQ76_001692"
     CDS             complement(6153..7733)
                     /gene="hyfF"
                     /locus_tag="OQQ76_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit F"
                     /protein_id="HCS1968229.1"
                     /translation="MSYSVMFALLLLTPLLFSLLCFACRKRGLSATCTVTVLHSLGIT
                     LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGVYSIGYMRHEV
                     AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS
                     SLESAWKYIIICTVGVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLM
                     LLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII
                     CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVALGIGGP
                     LGIFAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL
                     ALAGMPPFNIFLSEFMTVTAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQ
                     AVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTW
                     HDFLPSGTASVSEKHSER"
     gene            complement(7738..8388)
                     /gene="hyfE"
                     /locus_tag="OQQ76_001693"
     CDS             complement(7738..8388)
                     /gene="hyfE"
                     /locus_tag="OQQ76_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 membrane subunit"
                     /protein_id="HCS1968230.1"
                     /translation="MIGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSI
                     FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA
                     ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN
                     GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG"
     gene            complement(8400..9507)
                     /locus_tag="OQQ76_001694"
                     /pseudo
     CDS             complement(8400..9507)
                     /locus_tag="OQQ76_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001442177.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit D"
     gene            complement(9519..9629)
                     /locus_tag="OQQ76_001695"
     CDS             complement(9519..9629)
                     /locus_tag="OQQ76_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoin racemase"
                     /protein_id="HCS1968231.1"
                     /translation="MENLALTTLMLPFIGALIVSFSPQRRAAEWGFCSPH"
     gene            complement(9646..10590)
                     /gene="hyfC"
                     /locus_tag="OQQ76_001696"
     CDS             complement(9646..10590)
                     /gene="hyfC"
                     /locus_tag="OQQ76_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfC"
                     /protein_id="HCS1968232.1"
                     /translation="MRQTLCDEYLVIFALAQAVILLLTPLFTGISRQIRARMHSRRGP
                     GIWQDYREIHKLFKRQEVAPISSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGGG
                     DLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIAG
                     STHIEMISNTLATGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTEY
                     SGAGLALAKWGLGLKQVVMAALFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVL
                     ASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL"
     gene            complement(10601..12619)
                     /gene="hyfB"
                     /locus_tag="OQQ76_001697"
                     /pseudo
     CDS             complement(10601..12619)
                     /gene="hyfB"
                     /locus_tag="OQQ76_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311371.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit B"
     gene            complement(12619..13236)
                     /gene="hyfA"
                     /locus_tag="OQQ76_001698"
     CDS             complement(12619..13236)
                     /gene="hyfA"
                     /locus_tag="OQQ76_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfA"
                     /protein_id="HCS1968233.1"
                     /translation="MNRFVVAEPLWCTGCNTCLATCSDVHKTQGLQQHPRLALAKTST
                     ITAPVVCHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGS
                     RPVNAPAQYVFQADGSLKDGEENAPTQHALLRWEPGVQTVAVKCDLCNFLPEGPACVR
                     ACPNQALRLITDDSLQRQMKEKQRLAASWFANGGEDPLSLTQEQH"
     gene            complement(13489..13959)
                     /gene="bcp"
                     /locus_tag="OQQ76_001699"
     CDS             complement(13489..13959)
                     /gene="bcp"
                     /locus_tag="OQQ76_001699"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HCS1968234.1"
                     /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP
                     GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ
                     FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA"
     gene            complement(13959..14531)
                     /locus_tag="OQQ76_001700"
     CDS             complement(13959..14531)
                     /locus_tag="OQQ76_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     repressor"
                     /protein_id="HCS1968235.1"
                     /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML
                     GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV
                     ADSPHLIERFTALFDAHHMNIAELVSCTQPAENERAAQLHIQITAHSPASADAANIEQ
                     AFKALCTELNAQGSINVVNYSQHDEQDGVK"
     gene            14677..15555
                     /gene="dapA"
                     /locus_tag="OQQ76_001701"
     CDS             14677..15555
                     /gene="dapA"
                     /locus_tag="OQQ76_001701"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HCS1968236.1"
                     /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT
                     TGESATLNHDEHADVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT
                     VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI
                     KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC
                     KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD
                     SGRETVRAALKHAGLL"
     gene            15572..16606
                     /gene="bamC"
                     /locus_tag="OQQ76_001702"
     CDS             15572..16606
                     /gene="bamC"
                     /locus_tag="OQQ76_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708316.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HCS1968237.1"
                     /translation="MAYSVQKSRLAKVAGVSLILLLAACSSDSRYKRQVSGDEAYLEA
                     APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGVRTQFTGD
                     TASLLVENGRGNTLWPQVVCVLQAKNYTITQRDDAGQTLTIDWVQWNRLDEDEQYRGR
                     YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSASDAAN
                     AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM
                     AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL
                     VAVFQAAFSK"
     gene            16819..17532
                     /gene="purC"
                     /locus_tag="OQQ76_001703"
     CDS             16819..17532
                     /gene="purC"
                     /locus_tag="OQQ76_001703"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HCS1968238.1"
                     /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD
                     RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV
                     KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND
                     VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL
                     GGLIEAYEAVARRLGVQLD"
     gene            17700..18563
                     /locus_tag="OQQ76_001704"
     CDS             17700..18563
                     /locus_tag="OQQ76_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HCS1968239.1"
                     /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV
                     LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMG
                     KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
                     QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHNMQ
                     QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD
                     PAQCNTFGKSI"
     gene            18578..20593
                     /gene="tmcA"
                     /locus_tag="OQQ76_001705"
     CDS             18578..20593
                     /gene="tmcA"
                     /locus_tag="OQQ76_001705"
                     /EC_number="2.3.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cytosine(34) acetyltransferase TmcA"
                     /protein_id="HCS1968240.1"
                     /translation="MAELTALYTLTAQMKREGIRRLLVLSGEEGWCFDHALKLRDALL
                     GDWLWISPQPDAENHCSPSVLQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL
                     VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNDAILWRQNQPFSL
                     AHFTPRTDWHPATGAPQPEQQQLLQQLLTMLPGVAAVTAARGRGKSALAGQLISRIAG
                     SAIVTAPAKAATDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV
                     SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL
                     VFDDENFTHTPQGNIVISAFEQTLWRSEPETPLKVYQLLSGAHYRTSPLDLRRMMDAP
                     GQYFLQAAGEKEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGSNPLA
                     ATLRGRRVSRIAVHPARQREGVGQQLIASALQYTQDLDYLSVSFGYTGELWRFWQRCG
                     FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYRLRRDAQALAQWNGETLPVD
                     PLNDIVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ
                     LCTTLKLAGRKMLLVRQREEAAHALFALNDVRTERLRDRITQWQFFH"
     gene            20667..21365
                     /gene="ypfH"
                     /locus_tag="OQQ76_001706"
     CDS             20667..21365
                     /gene="ypfH"
                     /locus_tag="OQQ76_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311362.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1968241.1"
                     /translation="MKHDHFVVQSPDKPVQQLLLLFHGVGDNSVAMGEIGSWFAPLFP
                     DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA
                     NATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP
                     VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEAL
                     SGGKPGDDDVIEMM"
     gene            complement(21475..21675)
                     /locus_tag="OQQ76_001707"
     CDS             complement(21475..21675)
                     /locus_tag="OQQ76_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpfN family protein"
                     /protein_id="HCS1968242.1"
                     /translation="MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPP
                     HRDFNDKWDDDDDWPKKDQPKK"
     gene            complement(21703..22830)
                     /gene="dapE"
                     /locus_tag="OQQ76_001708"
     CDS             complement(21703..22830)
                     /gene="dapE"
                     /locus_tag="OQQ76_001708"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HCS1968243.1"
                     /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD
                     FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG
                     SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV
                     GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE
                     WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE
                     KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG
                     AQVVELGPVNATIHKINECVNTADLQLLARMYQRIMEQLVA"
     gene            complement(22834..23190)
                     /locus_tag="OQQ76_001709"
     CDS             complement(22834..23190)
                     /locus_tag="OQQ76_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HCS1968244.1"
                     /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNG
                     FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPSIIKRPLLCAPGKPM
                     LLGFSDSSYQQFFHEV"
BASE COUNT         5836 a         6132 c         6223 g         5094 t
ORIGIN      
        1 aaatggcgaa tggcaatggc gaacggaatc acaaacaaat tggcgataca gtgctcaaag
       61 ccactggcga caaacagggt gatgggcaaa atcatggcga cgattttgtc gcataacgaa
      121 cgcccgcaat aactcatcca cagcgccagg caaaccatca gattgcacat aatgccgagg
      181 ctgacagatt cagtaaatgt atgatgcatt ttgccctcgg cgcagtgtaa aaccgcgact
      241 ccccacatcg cgttttcact catcaccagc ccggaaaacc agattaacaa actgaaacag
      301 gcaatacctg ccagattacc acaggccacc agaagtgcgt taatcagcca agttcgccaa
      361 ctaataacgc cccgactttt tgccatcacc gtcattaccg acgaggtgaa caggctggtg
      421 ccgcaaaccg ccagcaaaat aaagccgagt gtaaagcaaa ggccgcccac cagatgggtt
      481 aatgcctgtg aagacggggc atcggcgata acggaaaggt aaaaagtaaa tccgatcgcc
      541 ataaacacgc cagcggacat cgccattaaa aagaccgaca ctttactgcg ggcaatttta
      601 tggacggcaa tccgttcagc gattgccgct tttctggcgc tcaactgcaa gtcgaaagag
      661 agtttgtttc tcatgcatac tcctgcaaaa gcagattaca acacctcgcg aaccgagatc
      721 cccagacgct gcattcgtga cagcagcgtg gtgcgcttca tccctaatcg tgtcgccgcg
      781 ccacggggcc cggcaacaat gccattggtt tctcgcaata cctgaacaat gcgctgacgt
      841 tcttcttcgt cattctctgg cgtcgtcggg tgcagcaact gcgccattga actgcgaagc
      901 gctgaatctt catttagcgt cggcagtaaa cggctttgtc ggacattaag atgtaaattc
      961 agactgttac cgcgagtcag cagtactgct cgctcaatca cgttttccag ctcgtgcacg
     1021 ttgcccggcc agtcccacga catcaactgg cgtagcgcct cggtcgggat ggcgtcaatt
     1081 gcgcgattca tatggcgcgc cattttttgc gtgaaatgtt ttgctaaaag agggatatct
     1141 tccggacggt cgcgtagcgg cggcaattcc aatgggaaga cattcaggcg ataaaagaga
     1201 tcgctgcgaa actggcgatc ttcaaccatt tgccacaaat cacggttggt ggcggcaatg
     1261 actctgacat tcaccgggat cgttctactc ccgccgagac gctcaatctc ccgttcctgc
     1321 aatacgcgca gcagtttagg ctgaagttct aacggcagat cgccaatttc atcgagaaac
     1381 aacgtgccgc catcggcaat ttcaaaacga tcacgatgtg tattaatcgc accagtaaac
     1441 gcccctttgt catgaccgaa taactcactt tccagaagac tggcggggat ggcagcgcag
     1501 ttgattttga ccagcggttt gtcgcgtcgc gtgctaagtt gatggatcgc tctggcgatc
     1561 acctctttgc cggttccggt ttcaccacaa atcaataccg tactgtcgct cttcgctaca
     1621 atatctacct gctggagcag gtcttccatt gcctggcttt gatagataat gtcaccgatg
     1681 cccagattcg aaaggagctg ctcgctaagc tggtagtttt cttgctgcaa actttcctgc
     1741 aaatcggtca tgctacgcca ggcatcggca ttgccaacgg caatagcgat gcgatcggct
     1801 atgtgttgta gtagctggca gttttcctca ctaaagagag tggaagaggt atgcgccagc
     1861 aacaatgcac ccggtgtatg gttgccaaag gtaagcggta taaggagcgc agattcgcag
     1921 ccgttagatg caagtaagag taataacggg tcgcgttgcc agagaaacag atcgtctgca
     1981 cggtgcgtca aggtcggttg tcgggtttgt agcgtttgtg tcagcaatac actgtcgcca
     2041 ggcatattgc gtggcagaca cgcacaatgt gaggcagaaa gatcgctgca ccacaggcta
     2101 aacttctcgt tctttcgatg atcgcccagt accatactga ctgaagccag accgaaaaaa
     2161 tgatggatct cacgagcgac gtcagcgatc agatcgtcga gatcaagatg tgacagcact
     2221 gcattagtaa tatcaaccag tacccgatga tgatcgcgat ctttctccag caaacgcagc
     2281 gccacctgtt gttcttcatc attgagccat gattgcagaa ccggagtgat aatgcgtgcc
     2341 agccagttaa acagtgtgca atcctaggga gtaaaacggc tgccgtgggt acgaataaag
     2401 cgtagctccg ccattccact actgccgaga aggacggcgt gacgcgaata atcgaccatc
     2461 tcgccctgat actctgttgt tgccgtcaca tcgctgccat catcatggta gcggtaatag
     2521 aagttgcttt tgataacatg cagttcaata agttgtaccg ggctgaacgg cggcggcatc
     2581 gggatgaagg cgcgtaataa agacgcctta ccgtgtttct gtgctaaccg ctccgcgagc
     2641 attccgttta ccgcttcaat tgttattcct tgtggcgggg caaacatcgc ctcgtctgac
     2701 atagccatca acagtcctta ttaatgagaa atccttctca cgcaattttt ctggccatca
     2761 gatagatggc cggttcctgc acaatttcat ccaacagatg aatgaattga atgctacgcg
     2821 cctgccacac agacgtcgcg tcatctgcca gtagcgcgaa tgcccgggtc aacagggcgg
     2881 tgtggctggc gtcaataaca atctcaccaa aggtcatcac ccccagcatc ttacgtcggg
     2941 cttgctcctc ttcgacctgt gcaagccaat cttcgttttc cgtcagtggg cagcggaagg
     3001 cgacattcag acaatcaatc acgccaacgt gatggccgat agccagcgag taatacatta
     3061 cctgagagct gtgttccggc atctcgtcgc tactggcgac aaactttttt cgcagcgtcc
     3121 agaaaacaat ttccccgcac tcttcagtca tgtaaccccc ggagtacgcg aaagagttgc
     3181 tgaacgatac tattgagacg tggatcgtcg gcatcgcgca accaggtgtt aacccgattt
     3241 cctgtaggat cgtcgcttaa atggcgcagg agccgatcgc aaatttctcg ccccagacga
     3301 tagcccgcca gccgccgcgc ttctcgctca atggcgatac gctgtgatgg cgggatctgt
     3361 ggccacaacg gttgcatagt caccccggtg ggatcgcgat aatccacagc gtgaatcttc
     3421 tgttgcagca aaccgagcgc cacggcgaaa ccgtgaatgg tggcggccgg tgttggcggg
     3481 cagccgggga tccaaacatc aatggggaca atggtgtcgc tgccgcccca gacgctgtag
     3541 agatcgtgga aaataccgcc gccgacaccg cacgcgccgt aggaaacaca gattttatga
     3601 tcgggggcag actcatacgc ccgaagtgca ggcatacgca ttgcccgggt gactgcgcca
     3661 gtaaataaca aaatatcggc gtgacgcggt gatgaaacaa ccttaatgcc aaaacgttct
     3721 gcgtcgaata cgggggtgat ggcagcaaaa atttcgattt cacaggcgtt gcagccgccg
     3781 caatcgacgc gataaacgta ggctgagcga cggatatcct gtagcaaatg ccgcttcatc
     3841 ttttgcgttt gctcatccag cgtgatgggc tggctgacat gttgtgtaag cactggactc
     3901 atagctgctc cttagccacc agcggtacat ctgtatcgtc gttgatcagc gtcgcgcgtt
     3961 gtttgcactc cgggcagacg ctcgcttgcg cccgcaacat ttcgcggttt tgtggcgcat
     4021 tttgttgctg tgccaacaat tcagcagcca gtgcgacggt tttttgcggg gcaaacgggc
     4081 gttcgcaacg gctgcaacgt tgtagatgga acgtcgcgcg ggtatagaga tcggctttat
     4141 tggtgacggt cagttcaaag ttattggtaa gctggatggc tctggtcggg cacacttctt
     4201 cacaacgtcc gcagtaaata caacgcccca gatagagctg ccaggtgcgc gaattttgct
     4261 ggtcgtcggt ctggatagtc agcgcatttg ccggacaagt acaggcgccg caggcaatac
     4321 attggctggg catcaggtcc ggtttcccgc gaaagcctgg gctgacctcc agtggcgcga
     4381 agggatattt caccgtcgcg gttccggcgc gcataatagt tttcagtaac ttcagcatct
     4441 tctgtcctta cttcagcggc gaacggttac gatcaatgcc gtagcgttcg atctctttat
     4501 acggcacggt ttttgactgg cgcttgcgca catctaccag cgtcacacgg tcggtacagg
     4561 agtagcaggg atcaaggcta ccgataatca gcggtgcgtc agaaacggta ttgccgcgca
     4621 gcatgtaacg caacaccggc cagttggcgt aggtggcggc acggcagcgc cagcggaaca
     4681 atttttggtt atcaccgagc atgctccagt gcacgtcttc accgcgtggc gcttcaacaa
     4741 agcccagcgc gaatgcgtga ggtttatagc taaagccttc ggtcagcagt ggggtatcca
     4801 gcatgttgtc gagggcaaat tccagcattg ccagcgaatc aaacgtctct ttgacacgga
     4861 ccatcacgcg ggagaaaaca tcgccgccgg tgaaggtaaa cagtgttttt ggaatattgc
     4921 cgtagtcggc gtaggggtga tcaaagcgca aatcacgggc aaaaccactg ccgcggatca
     4981 gcggccctac agggctataa tcacgggcga tttgtcggtc gagaatgcca atgtcctgag
     5041 tgcgttgttc catattcggc gtagcaagca gcatctctac cagctccgac acgtcggcgc
     5101 gcatctcgcg caccagtttc agcgtttgca gacgttgctc tttgagaata tcgcggcgaa
     5161 caccaccaat cagattcaga ccgtaggttt tacgcgaccc ggtcagcaat tccgccatcg
     5221 tcatcgactt ttcccgcacg cggaaaaatt gcataaagcc ggtatcaaaa ccaacaaaat
     5281 ggcaggagag gccaaggttg agcaaatgac tgtgtagccg ttcgacttcc agcagaatcg
     5341 agcgaatggt atgcgctcgt tgcggcacct caatccccag tgcattttca accgagttgg
     5401 tataggccac actgtgggca aaaccgcaaa tcccacacac gcggtccgat aagaaggtca
     5461 cttcgttgta gcccatccgc gtttctgcca gtttctccat gccgcgatgg acataaaaca
     5521 ggcggtaatc agcatcgaca atttgctcgc catccacaaa caagcggaag tgacccggtt
     5581 catcggaggt gatatgcagc gggccgacag ggatcacccg cgcatcgctg ttgccctcat
     5641 tgataaacgc atacgtttcg gaatctgtcg tcggttcagg gcgcagtcga taatccatcg
     5701 catctttgcg cagcggatgc atatcttccg gccagtcatc gggcaacacc aggcgacgct
     5761 gatccggcag gccaaccgga atcagcccgt acatatcgcg aatttctcgc tcgccccaga
     5821 ccgcggcagg gacgcgcggt gtgactgacg gaaactcccg actgtcggca tcgaccagtg
     5881 ccttcaccac gatccagcat ttttcggccc cttccattga aagggcataa taaaccgcgt
     5941 aatgaccgtt aagtgtccgc tcgtcgttgc caaacaggac tggaagccag ccatcatgtt
     6001 gataataaag ataatgtaca acgtcaggca gcagattgat tttcaccgta atggtgacct
     6061 gttcaggcgt ttgtcgctct tcatccagca ccgcgccggg gaactgcgtt ttcagggcgg
     6121 cgagaatcgc ttcgccacga tttgacgatg aattaacgtt cactgtgttt ctccgaaaca
     6181 gatgcggtgc ctgaaggcaa aaaatcatgc caggtgctac gttgtgcagg caggtcgtgc
     6241 gtccctgaga ggactatagt ggaagcgccc gccaggatcc tgatgacagg ttgtggaata
     6301 tgcgttccca tcgccagcat catgaccagc agaatcacca ttggcgaggt ggtcaaccag
     6361 ccgagatcac cccggttaac ggcctgcggc ggtttcgcca ttaacacccg cgcagccatc
     6421 cgtaccaggc ccgccagcac cagcgttaac agcaataaca gcaggacgat aatcagcagg
     6481 tgattacgtg ccagtcctgc ggtaacggtc ataaattcgc taagaaaaat gttgaagggc
     6541 ggcatccctg ccagcgccag cgcaccgccg ccaaacagca cggcggtaaa tggcatgatt
     6601 ttgagcatcc cacagacgac gttgagatcg cgcgtgccgt acttgagcag tacattgccg
     6661 gaaccgcaga acagcagcgt ttttgccaga ctgtggttta aggtgtgcag cagcgcggca
     6721 aaaattccca gcggcccgcc aatgcctagc gccaccgcga ccagccccat gttctccacg
     6781 ctggagtacg ccagcagacg cttaatgtcc cgctgtacca gaatgaaaaa tgccgccacg
     6841 gcaaccgaca acatgccgaa gatgagcaac aaccggttgg ggaaatcgct gccgatggct
     6901 tggcaaataa tgatgtaata gcgaatcagc accaacagcg cgcagttcag caatacggcg
     6961 gagagcaggg cgctgaccgg actcggcgct tcactgtgag catccggcag ccaggcgtgc
     7021 atgggaaata gcccggtttt ggtaccaaag ccaattagca caaacacaaa ggccaacagc
     7081 attaatgttg ggtcaagcaa ggacgattgc ttaagaacct cgctccagaa tatcgccatt
     7141 tctgcctgcg gcataacgct ggcggcgttg gcgtatacca gcacggtacc gaacagacca
     7201 aaagcgacac caacagtaca aataatgatg tacttccatg ctgattccag cgatgaacgc
     7261 tgaccgtaaa tgcctaccag aaacgccgag cttaaggtgg tggcttcgat cgccgcccac
     7321 atcacaatca ggttattgct ggtaacaacc agcagcatgg tgaacaaaaa cagatggaag
     7381 aaaccgtagt aatcgcacag tgtaacgggt gaaagctcgc cgtgtgccac ttcatgacgc
     7441 atgtagccaa tcgagtaaac accggtgaga aagccaatca caccaagaat ggcgaggaac
     7501 aaaccgccca gaccatcaat atgaagccac agtcccgcag cgaatatttc tcctgcatca
     7561 gcggcagttt ggaccaccca gagtgccaga atcagcagca gtgtgatccc taagctatgt
     7621 aatacagtca ccgtacaagt cgcagagagc ccccgtttcc ggcaggcaaa acagagcagc
     7681 gaaaaaagca gcggcgtgag caggagtaaa gcgaacatca cagaataact catctcatta
     7741 tcccttcagc gcggtcaagt tgttcacgtc cagcgtgccg tgggtacgcc atatttttct
     7801 tgccagtaac accatcacaa tgacggcgaa gatggcgtcg gtagcgatac ctatttccac
     7861 cagttccggt gctcgccagg caagaagcgc cagcaccaga tgggagccgt tttccatcag
     7921 gcagtaacca aaaatttgcc gcaggatatt gcgctggctg acaatgcaca gcaggccaag
     7981 cagaaaatga cctaacgcta ccgccagcgc cggtttcagc ccggtagcca tcggtagctt
     8041 cacgggctga acgacaaatg cgcaaagcag gacaattaac gccgcgagca gtgccatcat
     8101 tgccggaccg aataacgctt tttccgggat gttctgggga atatttcgtg cagcgtaagt
     8161 catgattaac ggtaccagca gcactttggt gataaaggcg ctggcggacc agatcagcag
     8221 ttgctctgcg gcgaacaggc acgagagagt ggcgaaaata gacaccagca ccagcgactg
     8281 gcaggcgtaa aatccgcatg acaggcgata gcttttgacg ctaatcacaa acagcgatgt
     8341 cagcatcatc agtcccgcca gattatttac gatcatagaa ccgatcattc atcatctcct
     8401 tactgcaacc aggtcgcggc gattacgctg gaaatcagcg acatcacaat cagtacaatc
     8461 aacaccaggc gcattgaccc tggcagcggt gcggcatcgg cgacggcctc gctcggtttg
     8521 ccaggcacaa cgcgaccaaa ccagcgaata aaccaggcga aactggcgac cgattcaatc
     8581 atcagcagaa tcatggcggg cagcaggatc cagtactcca ctgacaacgc aaaaccggcg
     8641 gcaaacagcg ggaatttact gaagaagccg ttgaacggcg gcacaccggt aatcgccagc
     8701 gctgccacgc agaaacccac gcctggcaac ggcagggtgt gcaatacgcc acgcagacgc
     8761 ggcaacaagc gcgtgccgca gctgtaactc agcgcacctg ctacaaggaa aaacaggctt
     8821 ttagcgaacg cgtggttgac gatgtaggcg atgctgccct ccagtgccag ccgcccactt
     8881 tcaccatcga tgcggcgtgg agataggcgc tgatcggtgt tggcgcttcc attgcgtccg
     8941 gtagccacgc ttgcatcggt agctgggccg atttccccca cgcggcaaac aggatgccgc
     9001 cataaaccag ataacgtgcg tcgccatgta actcgctcat cgcgctaagc acaaacgttc
     9061 cggtctgcaa aaacagcgtg gcggcggcaa gatacaaccc caacgaaccg atatgggtga
     9121 taagcaacgc ttttagtgtt gaacgctgcg ctttatcgct ctggtaataa ctgatcaacg
     9181 cccaggagca gccgccctaa tttcaaaaaa caacaactga ccgagcagcg tcgaggagag
     9241 taccagtccc gccatcgcgc cgataaacac cagcaaaaat gcgtaataac gattcgtgcc
     9301 gttatgcggg tgttcgcgat ttttatccgt cagataaccc gtggagtaga gcgtgaccag
     9361 caaaccgaga aacaccacca caaacagaat cagcgtactc acgcgatcaa tgaccaggcc
     9421 aaacaatgcc acatccccca cgttgaccaa cgtcaacgtg acggcaactt tatcggcctg
     9481 ataaaacgcg gagatcagcg acaacatgca cagcgtggtc agtgcggcga acaaaacccc
     9541 cattcggcgg cccgacgttg tggcgaaaac gaaacgatca gtgcgccgat aaaaggcagc
     9601 attaacgtcg tcagagcaag attttccata ttccgtcagt gctccttaca gaccggttaa
     9661 ccagaagacc catgcaagcg cagcaaggct gaagccaagc caggtcacat ggtgaatgag
     9721 taaaaaacgc ccgcgtgcca gcgtgttttc tgcgattgag gccagtacaa aaatcagcaa
     9781 aaccttgagc agcgtaacga caagtgaagt cagcaggcag gcgagagaaa gttcttgcgc
     9841 gcgcccaaag ggcagaaaca gggccacaaa cagtgctgcc atcacgacct gtttcagccc
     9901 cagcccccat ttcgctagcg ccagcccggc accggaatat tcggtcagcg ggccttcctg
     9961 taattcctgt tctgcttcag caacatcaaa gggaattttt cccatctcaa tgaagcaggc
    10021 aaaaccacag gccagtaatg ccagtacggt ggttagcggc gagttccagc ccgttgccag
    10081 cgtattgctg atcatctcga tatgcgtgga acctgctatc agcgccaata ccagcagtga
    10141 gagaatgagc atgggttcga ccagaatgcc gagcgtcaac tcgcgactgg caccgactcc
    10201 cgcaaacggg cttccggtat ccagcccgga aagagcaaag aaaaaacgaa acagggcaag
    10261 aagatagata agggtgatca gatcgccgcc gcccgcaaaa ggggaaacgg taataaaaag
    10321 tggtagggcc atcgccagca ccagcatgct gctgattaat acccacggca tcaggcggaa
    10381 catcagacct gaagatatag gcgcaacttc ctggcgttta aacagtttgt ggatctcgcg
    10441 ataatcctgc cagatccccg gcccgcggcg ggagtgcata cgcgcgcgta tctgccgcga
    10501 aatacccgta aaaagcgggg ttagcagcag aatcacggcc tgtgctaacg caaaaatgac
    10561 cagatattcg tcgcaaagag tttgtctcat ggtgatttcc ttagacggca atagcgatta
    10621 gcagcacaac tagtgcggca actagataca ggcaatagag acgaaagtcg ccgctttgca
    10681 gatgctgtat ttctttggcc agccgttggg tggcgctcac gatggggcgg atcacccgct
    10741 catcccagaa gggttctgtg ctctgagccc tggcggtgac gtgcgcaaga tctttattta
    10801 gcctcagcgt agggtcgagc tgttgtcgta gacgaaataa cgcagagaag accacacgca
    10861 gcggctgcat cacgccattg cctgacggag ccatcgcgtt ttcccagccg tagccgcatg
    10921 cccaggcatc tcctgtgcga cgaaacgctg cgcggcgcga acgacaccac agccagtaaa
    10981 ggcctggcag caaaggcatc gccagtagta acagcaacag taatgaagga gtgacccgtg
    11041 tatgaaacgt gccgggtaca agtgctattc cgctggcgac agtgacggga ggggtattgg
    11101 taaacgcatg ggcaatatgc attatcttcg gtgccagcca actggcacta agcgcaatta
    11161 atacgcagag tgccgcgagc agtagcatgg cgacgatcat cgtatttgga acttcctgtg
    11221 cctcttcagc gtgtgtactg cgcggcgcac cacagaaagt aataccgtac attttgacga
    11281 agcacattac tgccagccca ccagtgactg ccagcattac catagcaata ggacccgcaa
    11341 gttgtagcgc tacggcttcc acacgactta gtgagaacag cgactgccag gtgtaccata
    11401 tcgctgataa aaccattcag cggaggaatg gctgatatcg cgaggcaacc aatcaggcat
    11461 gctgcggctg tccacggcat ccgtttcgcc agtgccccca ttttttccat gtcgtgggta
    11521 tgcaaacgcg aaataatcgc gcccgcgccg agaaatagca gccctttgaa cagcgcatgg
    11581 ttgagcagat gaaacagtgc gccgagcagt ccaaccacgg tgagcagcgg gtcgtgcagt
    11641 gacagaccgt ccatcgccac accgactgcc agcaaaataa tgccgacgtt ttcgacggta
    11701 ctccaggcca gcagccgttt gatatcctgt tccgccagcg cctatagcac gcccaggagc
    11761 gcggagattg cgccgatcgc catcaccaga atgccccacc acagaggcaa acccgtttgc
    11821 gccagcagat ccatcgctac tttcaggatg ccgaaaatac cgattttgac cattacgcca
    11881 gacatcaacg ccgaagcgtg cgatggtgcg gcagggtgag cgcgcggcaa ccagctgtgc
    11941 aacggcatca tcccggcttt cgcgccaaaa ccgaaaaagg ccagcagaaa caccgccgac
    12001 gccagccccg gagaaagtga aagcgtgcga aactggcaaa atcgaggctg ccgctttcgc
    12061 gccccatcag caagaaggcg atcataatca gcaccgatcc ggcgtgggcg ataaaaaagt
    12121 agagcatgcc agcgttgatc gacgttttat cctgcctggc aatgaccaga aaccaggaag
    12181 acagcgacat catttcaaac agcacgatga accaaaaagc gttgtccatc accagcaggg
    12241 caaccatcga tgcgatgaaa agattcataa agaagcccat cgccgccgcg cctttgccct
    12301 cgtattcgcg catataagtc aatgaataga gcgaacaaac caccaccagc aaggagataa
    12361 ccagcaccat aaatgccgag aggctatcca ttcgcagggt taaatcggca aagtcaaaag
    12421 gggtggcaaa acgggcgact aaagttacac cagcatgtaa ttgcgtaatt ccgctgatga
    12481 tgccaatcac gccgcccacc agcgatgtga tgccggaaag cttaatagcc agtctgtcca
    12541 gaccgagtaa aaacagcgaa gccagactgg caaacagaaa gaggatcagc gaccaggtta
    12601 ataattgcag ggcatccatt agtgttgctc ctgagtgagg gaaaggggat cctccccgcc
    12661 attggcaaac cagcttgcgg caaggcgctg tttttctttc atctgacgtt gcaggctatc
    12721 gtcggtaatc agccgtaacg cctgattcgg gcaagcgcga acgcaggccg gaccttctgg
    12781 caagaaatta cacaggtcgc atttcaccgc gacggtctgg acacccggtt cccagcgcag
    12841 caaagcatgt tgggtcggcg cgttttcttc gccatctttg agtgagccgt cagcctgaaa
    12901 aacatattgc gcaggggcat tcaccggacg gcttcctgaa gcgctgattg cgccaaatgg
    12961 gcagaccacg gcgcaaagct tgcagccaat acagaggctt tcgttgagtt ggatcgcatc
    13021 atccctctgg gagatggcat tgaccgggca gacctgcagg caaggggctt cctcacagtg
    13081 atgacacacg acaggggcag tgattgttga cgtcttcgcc agggccaggc gcgggtgttg
    13141 ctgtaaacct tgcgttttat gcacgtccga acaggtagcg agacaggtat tacatcctgt
    13201 acaccacagt ggttcggcca ccacaaagcg gttcatgtcg gctccttgaa aatgatatga
    13261 aacattgcat ttcatattgc ataaaggatg ccagtctgat taatttaata tattcaataa
    13321 attatgtatt aactgggttc tgaacggtac aaaaatgatg gtcattaacg ttcagcaaaa
    13381 aatggattcg acacccgtgt cgcaggggaa agcgagaatg tgatcttgat cacgagaagt
    13441 gaggtgtgct gaccgcaagc gcagccagca cggaatggag caaagtaatc aggcgtgttc
    13501 tttcagccag ttcagcacaa cgtcgtggtg attgctggtt ttaaaatcgt caaagacatg
    13561 ttcgattttg ccatcagcgt caatcaggaa gctgatgcga tgaataccat cgtaggtttt
    13621 gcccatgaag gacttttcac cccagacgcc gaattgttcg cacacctggt ggtcctcatc
    13681 agacaggagc gtaaagttaa gcagctcttt ttccgcaaaa cgggagagtt tttcgggttt
    13741 atcggtgctg atacccagca catcaacgcc cgcttttttc aactcatcca tgttatcgcg
    13801 taagccgcag gcctgtacgg tacagccggg ggtcatggct ttcgggtaga aataaaccag
    13861 aacacgctgt ccctggaagt cggtcaaatt aacttgttct ccgtcttgat ccggcaagct
    13921 aaatttcggt gcgatatcac cggctttcag tggattcatt acttaactcc atcctgttca
    13981 tcatgttggg aataattgac gacgttaata ctgccttgtg cattgagttc tgtacatagg
    14041 gctttgaacg cttgctcaat atttgctgcg tccgcagatg cggggctgtg ggcggtgatc
    14101 tgaatatgca actgcgcagc ccgttcattt tcagcaggtt gcgtgcacga caccagctcc
    14161 gcaatgttca tatgatgcgc gtcgaaaagt gctgtgaagc gttcaattaa atgcggggag
    14221 tctgcaacat cgacctgaac ccagacagat gctggcattg gcggacgcgg acgcgccgtc
    14281 gtgcgcttca tcacgattaa aagatccagt tcggcacctt tcaacggtaa cgttgattca
    14341 atcagagtaa tggcattcca tgaaccggaa agcagcatga taaacgtgaa ctcttctccc
    14401 agcatagcca ggcgactgtc ttcaatatta cagccgcaac tactgacatg acgggtgatg
    14461 gtgttcacaa ttccagggcg atcggcaccc aacgcagtga tcaccagata atgttgcgat
    14521 gacagtgtca aactggttat tcctttaagg ggtgagttgt tcttaaggaa agcataaaaa
    14581 aaacatgcat acaacaatca gaacggttct gtctgcttgc ttttaatgcc ataccaaacg
    14641 taccattgag acacttgttt gcacagagga tggcccatgt tcacgggaag tattgtcgcg
    14701 attgttactc cgatggatga aaaaggtaat gtctgtcggg ctagcttgaa aaaactgatt
    14761 gattatcatg tcgccagcgg tacttcggcg atcgtttctg ttggcaccac tggcgagtcc
    14821 gctaccttaa atcatgacga acatgctgat gtggtgatga tgacgctgga gctggctgac
    14881 gggcgcattc cggtgattgc cgggaccggt gctaacgcta ctgcggaagc cattagcctg
    14941 acgcagcgct tcaatgacag cggtatcgtc ggctgcctga cggtaacccc ttactacaat
    15001 cgtccgtcgc aagaaggttt gtatcagcat ttcaaagcca tcgctgaaca tactgacctg
    15061 ccgcaaattc tgtataatgt gccgtcccgt actggctgcg atctgctccc ggaaacggtg
    15121 ggccgtctgg cgaaagtaaa aaatattatc ggaatcaaag aggcaacagg gaacttaacg
    15181 cgtgtaaacc agatcaaaga gctggtttca gatgattttg ttctgctgag cggcgatgat
    15241 gcgagcgcgc tggacttcat gcaattaggc ggtcatgggg ttatttccgt tacggctaac
    15301 gtcgcagcgc gtgatatggc ccagatgtgc aaactggcag cagaagggca ttttgccgag
    15361 gcacgcgtta ttaatcagcg tctgatgcca ttacacaaca aactatttgt cgaacccaat
    15421 ccaatcccgg tgaaatgggc atgtaaggaa ctgggtcttg tggcgaccga tacgctgcgc
    15481 ctgccaatga caccaatcac cgacagtggt cgtgagacgg tcagagcggc gcttaagcat
    15541 gccggtttgc tgtaaagttt agggagattt gatggcttac tctgttcaaa agtcgcgcct
    15601 ggcaaaggtt gcgggtgttt cgcttatttt attactcgct gcctgtagtt ctgactcacg
    15661 ctataagcgt caggtcagtg gtgatgaagc ctacctggaa gcggcaccgc ttgcggagct
    15721 tcatgccccg gctggaatga ttttgccggt gacctccggt gattatgcaa tcccggtgac
    15781 caacggtagt ggtgctgtcg gtaaggcgct ggacattcgt ccaccagccc agccgctggc
    15841 actggtttct ggcgtgcgta cccagttcac gggcgatacc gcttcattgc tggtggaaaa
    15901 tggtcgtggc aatactctgt ggccgcaggt ggtttgcgtg ctgcaggcga aaaactacac
    15961 catcacccaa cgtgatgatg ctggtcagac actgaccatc gattgggtac aatggaaccg
    16021 tctggacgaa gacgagcagt atcgtggtcg ttatcaaatc tctgttaagc cgcagggtta
    16081 tcagcaggcg gttacggtta aactgctgaa cctggaacag gcgggcaaac cggttgcaga
    16141 cgcggcttcc atgcagcgtt acagcacgga gatgatgaac gttatttccg ccggtctgga
    16201 taaatctgcc tctgacgccg cgaacgctgc gcaaaatcgt gcctccacca ctatggacgt
    16261 acaaagtgca gctgatgaca ccggtttacc gatgctggtc gtacgcgggc cgttcaatgt
    16321 ggtttggcaa cgtctgccag cggcgctgga aaaagtgggc atgaaagtga ccgacagcac
    16381 ccgttcgcag ggtaacatgg ccgtaactta taagccgctg tctgacagcg actggcagga
    16441 actgggcgcg agcgatccag gcctggcatc cggtgactat aaactgcagg ttggcgattt
    16501 agataaccgc agcagcctac agttcatcga tccgaaaggt catactctga ctcagagtca
    16561 gaacgacgcg ctggtagctg tcttccaggc tgcgtttagc aagtaaaaat acagggctgg
    16621 agtcatccgg cccttttttc tgatatgata cgcaaacgtg tgcgtcggca gaaaaatgca
    16681 attttagcgg taattcgcac gaaatttgtt tgtcggacgt aggtcggata aggcgttctt
    16741 gccgcatccg acaaaacatc cggcacacca gacagcaaaa gattttaaaa cgttaattca
    16801 cacccaggag tgataaagat gcaaaagcaa gctgagttgt atcgtggtaa agcgaaaacc
    16861 gtatacagca cggaaaaccc ggacctgttg gtgctcgaat tccgcaatga tacgtcagca
    16921 ggggatggcg cgcgcattga gcagtttgat cgcaaaggta tggtgaacaa caagttcaac
    16981 tacttcatta tgagcaaact ggctgaagcg ggtatcccga ctcaaatgga gcgtctgctc
    17041 tccgataccg aatgtctggt gaaaaagctg gatatggtgc cggttgagtg tgtcgtgcgt
    17101 aaccgtgctg caggctctct ggtgaaacgt cttggaatcg aagaaggtat tgagctgaac
    17161 ccgccgctgt tcgatctgtt cctgaaaaac gatgccatgc acgatccgat ggtcaacgaa
    17221 tcttactgcg aaacctttgg ctgggtgagc aaagagaacc tggcgcgtat gaaagagctg
    17281 acctacaaag cgaacgacgt gctgaaaaaa ctgttcgatg atgctggtct gattctggtc
    17341 gacttcaagc tggagtttgg tctgtacaaa ggtgaagtgg tactgggcga tgagttctcc
    17401 ccggacggca gccgcctgtg ggacaaagaa acactggaga aaatggacaa agaccgtttc
    17461 cgccagagcc tcggtggcct gatcgaagcc tatgaagccg tcgcccgccg cctgggtgta
    17521 cagctggact gatttttctg ttcatcatct tgccgtgcag ctggcacggc aagacaaccg
    17581 ctctcggaat atatgcattg aacgctcatt cctccgccat ttcatcccgc tttcctgtgg
    17641 taattttcct ctgaaccacc tacgatcatt tctataatga atatattgtt gaggtatcta
    17701 tgcgttggca agggcgacgt gaaagtgaca atgttgaaga caggcgcaac agctccggtg
    17761 gtccgtctat gggcggtccc ggttttcgcc tgccaagcgg taaaggcggg ctgattttac
    17821 tgatagtcgt gctggttgca ggctactatg gtgttgattt aaccgggtta atgactggac
    17881 agccggtttc ccaacaacaa tcaacgcggt ccattagccc taatgaagac gaagctgcaa
    17941 aattcacctc ggtgattctg gcaaccacgg aagacacctg gggacaacag ttcgagaaga
    18001 tgggtaagac ctatcagcaa ccgaagctgg tcatgtaccg tggaatgacg cgcaccggct
    18061 gcggggcggg ccagtccatt atggggccgt tctattgccc ggcggatggc acagtttata
    18121 tcgatctctc cttctatgat gacatgaaag acaaacttgg cgcggatggc gattttgccc
    18181 aggggtacgt tatcgcccat gaagtcggtc atcatgtgca gaaactgtta ggcatcgagc
    18241 cgaaagttcg tcaactgcaa caaaacgcga cgcaggcgga agtgaaccgc ttatctgtgc
    18301 gtatggaact ccaggccgac tgttttgccg gtgtctgggg gcataacatg cagcagcaag
    18361 gtgttctgga aaccggcgat ctggaagagg cgctgaatgc ggcgcaggcc atcggcgatg
    18421 accgtttaca acagcaaagt caggggcgag tagtaccaga cagtttcaca catggcactt
    18481 ctcagcaacg ctacagctgg tttaaacgtg gtttcgacag cggcgatccg gcacaatgca
    18541 atacttttgg taaaagcatt taatttccgg ggcagggatg gctgaactga ctgcgcttta
    18601 cacattaaca gcgcaaatga aacgtgaagg gatccgccgc ttgctggtgt tgagcgggga
    18661 agagggttgg tgttttgatc atgcgcttaa gttgcgtgat gccttacttg gcgactggct
    18721 gtggatttcg ccgcagccag atgctgaaaa ccactgttct ccctcggtgc tacaaacttt
    18781 acttgggcgc gagttccggc atgcggtatt cgacgcccgc cacggctttg atgccgctgc
    18841 ctttgcggca cttagcggaa cgttgaaagc gggaagctgg ctggttttgt tactccctgt
    18901 atgggaagag tgggaaaacc aacctgatgc cgactcgctg cgctggagtg attgccctga
    18961 ccctattgcg acgccgcatt ttgtccagca tctcaaacgc gtacttacgg cggataacga
    19021 cgctattctc tggcggcaaa accagccgtt ctcgttggcg cattttactc cccgtactga
    19081 ctggcacccc gcgaccggcg caccacaacc agaacaacag caactcttac agcagctact
    19141 gaccatgctg ccgggcgtgg cagcggtaac ggctgcgcgt gggcgcggta agtcggcgct
    19201 ggcagggcaa ctcatttctc gtattgcggg cagtgcgatt gtcaccgcgc ccgcaaaagc
    19261 ggcaacggat gtactggcac aatttgcggg cgagaagttt cgctttattg cgccggatgc
    19321 cttgttagcc agcgatgagc aagccgactg gctggtggtc gatgaagccg cagccatacc
    19381 tgcgccgttg ttgcatcaac tggtatcgcg ttttcctcga acgttgttaa ccactacggt
    19441 gcagggctac gaaggcaccg gacgtggttt tttgctgaaa ttttgcgctc gctttccgca
    19501 tttacaccgt tttgaactgc aacagccgat ccgctgggca cagggatgcc cgctggaaaa
    19561 aatggttagt gaggcactgg tttttgacga tgaaaacttc acccatacac cacaaggcaa
    19621 tatcgtcatt tccgcatttg aacaaacgtt atggcgaagc gagccagaaa cgccgttaaa
    19681 ggtttatcag ttattgtctg gtgcgcacta ccggacttcg ccgctggatt tacgccggat
    19741 gatggatgca ccagggcaat attttttaca ggcggctggc gaaaaagaga ttgccggagc
    19801 gctgtggctg gtggatgagg ggggattatc tcaacaactc agtcaggcgg tatgggcagg
    19861 ttttcgtcgc ccgcggggta atctggtggc ccagtcgctg gcggcgcacg gtagcaatcc
    19921 actggcagcg acattgcgtg gacggcgggt cagccggata gcagttcatc cggctcgtca
    19981 gcgcgaaggc gttgggcaac agctcattgc cagcgctttg caatatacgc aagacctcga
    20041 ctatctttcg gtgagttttg gttacaccgg ggagttatgg cgtttctggc aacgctgcgg
    20101 ttttgtgctg gtacgaatgg gtaatcatcg tgaagccagc agtggttgct atacggcgat
    20161 ggcgctgtta ccgatgagtg atgcgggtaa acagctggct gaacgtgagc attaccgttt
    20221 acgtcgcgat gcgcaagctc tcgcgcagtg gaatggcgaa acacttcctg ttgatccact
    20281 aaacgatatc gtgctttctg acgacgactg gcttgaactg gccggttttg cttttgctca
    20341 tcgtccgcta ttaacgtcgt taggttgctt attgcgtctg ctacaaacca gtgaactggc
    20401 attaccggcg ctgcgtgggc gtttacagaa aaatgccagt gatgcgcagt tatgtaccac
    20461 acttaaactt gcaggccgca agatgttact ggtccgtcag cgggaagagg ccgcgcatgc
    20521 gctgttcgca cttaatgatg ttcgcactga gcgtctgcgc gatcgcataa cgcaatggca
    20581 attttttcac tgactccttc aattttctcc catggtcatt gtgagccagc ggcgtaaaat
    20641 taatgacatc agttaaggag ttcgccatga aacatgacca ttttgttgtt caaagcccgg
    20701 ataaacctgt gcaacagttg ttactgcttt tccatggtgt cggggataac tcggtggcaa
    20761 tgggggaaat aggcagttgg tttgcaccgc tgtttcctga tgcgctggtg gtgagtgtcg
    20821 gtggcgcgga gccgagcggt aatccggcgg ggcgtcagtg gttttcggtg cagggtatta
    20881 cggaagataa tcgccaggcg cgtgtggatg ccatcatgcc gacgtttatt gaaacggtac
    20941 gctactggca gaaacagagt ggagtagggg ctaacgccac ggcgttaatc ggtttctctc
    21001 aaggcgcgat tatggcgctg gagagtatta aagccgaacc gggccttgct tcacgcgtca
    21061 ttgcttttaa cggacgctat gcgagcctgc cggaaaccgc gtctacagca acgacaattc
    21121 acctgattca tggcggtgaa gatccggtta tcgatctggc gcatgcggtt gcggcgcagg
    21181 aagcgttaat cagtgccggt ggtgacgtga cgctggatat cgtggaggat ttaggccatg
    21241 cgatcgacaa tcgcagtatg caatttgccc tggatcactt gcgttatacc attccgaaac
    21301 attatttcga cgaagcgcta agtggcggta agcctggcga tgatgatgtg attgaaatga
    21361 tgtaaaagac agattacctg gcctgataag acgcgtgagc gtcgtatcag gcatcgttca
    21421 ccattgccgg atgcggcgtt aacgccttat ccggcctacg gttgagcact cagcttactt
    21481 cttcggttga tcctttttcg gccagtcgtc gtcatcgtcc cacttatcgt tgaaatcacg
    21541 atgcggggga agctccggct tgttggcgag aaatttcttg tggtcgacgc gcttgagatc
    21601 tttaatcacg ttcagcagga cgcctaccaa aaagacaatc accagaatcc accaatattt
    21661 agccagccag tccatgctta tttcctcttg cagaaccact catcaggcga cgagctgttc
    21721 catgatacgt tgatacatac gggcaagtag ctgcaggtcg gcagtgttca cacattcatt
    21781 aattttatga atagtggcat tgaccggccc gagttccacc acctgcgccc ccatgcgagc
    21841 aataaagcgc ccgtcggacg ttccgcctgt ggtcagtagc tgcggtttaa tttcattata
    21901 gtgctcaacc gcgttaacga ccgcatccac cagtttaccg cgcgcggtca aaaatggctg
    21961 cccggaaagc caccaatcca ccgtatagcg cagttgatgt ttttcaagca gggcaagcac
    22021 ctgcgctttg atcatctcat cagtcagttc ggtgctgaag cggaagttaa actgcacaaa
    22081 cagttcaccc ggaataacat tgttactgcc cgttcccgcc tgaatattag caatctgcat
    22141 actggtcgcc gggaaaaatt cattgccctg atcccactca atagccacta attcattaag
    22201 gaaaggtgct gcgcgatgta ctggattgtc agccagatgc gggtaggcca catgcccctg
    22261 aacgccatga atggtaaggt tgcaggttaa cgatccgcga cgaccatttt tcaccacatc
    22321 accaaccact tcgatactcg acggttcgcc gaccaggcag taatcgagac gctcattacg
    22381 tgccatcaac gcttcgacga cttttaccgt accgttgtgg gcactggctt cttcatcaga
    22441 ggtgatcaga aatgccagtc gccccgtatg gttgggatgt tgtgcgacaa agcgttctgc
    22501 cgctaccacc atcgccgcca gcgagccttt catatctgcc gcaccgcgcc cgaataacat
    22561 gccatcacga atggtgggtt caaacggcgg attgatccaa cgatcggcgt cgccaggcgg
    22621 caccacgtcg gtatgcccgg caaaggctaa cgtttcacct tgcccacgcc atgcccaaaa
    22681 attctgcgta tcggcaaagt ccatgcgttc aacggtaaaa ccgatcgcct gcaaacgttc
    22741 aatcaacaaa gcctggcatc ctgcgtcatc aggactcagg gaagggcggc gaataagctg
    22801 ttgtgtcagc tcaataaccg ggcacgacat agactacacc tcatggaaaa attgctgata
    22861 actggaatca ctgaaaccca gcagcatagg cttaccaggc gcgcagagca atggacgttt
    22921 gataattgaa ggcatttcag tcattaatgc cgccgcagag gccgcatcgg tgattttatt
    22981 gcgggtggtt tcgtccagtt tacgccaggt tgtaccacgg gtgttcagta acgcttccca
    23041 gcctaattcg ttgataaaac cgttcaataa ttcgctgtcc agcccatcga cgcggtaatc
    23101 atgaaaacga tagtcgatgt tattggcttc cagccaacgg cgagcctttt taatggtgtc
    23161 acaatttttg atgccgtaaa gtgtaaccat aatgaatcct ttttcgatct atgagaataa
    23221 atactcattt aagggtgaaa acattttgcc tgcaaatgat tatcaggaaa tataacatta
    23281 tcgaa
//
LOCUS       DAJVUN010000052        23169 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.052, whole genome shotgun sequence.
ACCESSION   DAJVUN010000052 DAJVUN010000000
VERSION     DAJVUN010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23169
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.052"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(299..613)
                     /gene="pspE"
                     /locus_tag="OQQ76_001710"
     CDS             complement(299..613)
                     /gene="pspE"
                     /locus_tag="OQQ76_001710"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase PspE"
                     /protein_id="HCS1968245.1"
                     /translation="MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIP
                     LKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKV
                     KG"
     gene            complement(688..909)
                     /gene="pspD"
                     /locus_tag="OQQ76_001711"
     CDS             complement(688..909)
                     /gene="pspD"
                     /locus_tag="OQQ76_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspD"
                     /protein_id="HCS1968246.1"
                     /translation="MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVA
                     RRPLKMLLAVALEPLLSRAANKLAQRYKR"
     gene            complement(918..1277)
                     /gene="pspC"
                     /locus_tag="OQQ76_001712"
     CDS             complement(918..1277)
                     /gene="pspC"
                     /locus_tag="OQQ76_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HCS1968247.1"
                     /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS
                     IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME
                     RYVTSDTFTLRSRFRQL"
     gene            complement(1277..1501)
                     /gene="pspB"
                     /locus_tag="OQQ76_001713"
     CDS             complement(1277..1501)
                     /gene="pspB"
                     /locus_tag="OQQ76_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HCS1968248.1"
                     /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA
                     QLADEAKRMRERIQALESILDAEHPNWRDR"
     gene            complement(1555..2223)
                     /gene="pspA"
                     /locus_tag="OQQ76_001714"
     CDS             complement(1555..2223)
                     /gene="pspA"
                     /locus_tag="OQQ76_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HCS1968249.1"
                     /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR
                     STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK
                     SLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK
                     LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK
                     QDNQ"
     gene            2390..3367
                     /gene="pspF"
                     /locus_tag="OQQ76_001715"
     CDS             2390..3367
                     /gene="pspF"
                     /locus_tag="OQQ76_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HCS1968250.1"
                     /translation="MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL
                     IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG
                     TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPATVNEGT
                     FRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERARETLL
                     NYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP
                     LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI"
     gene            complement(3487..4752)
                     /gene="puuE"
                     /locus_tag="OQQ76_001716"
     CDS             complement(3487..4752)
                     /gene="puuE"
                     /locus_tag="OQQ76_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate transaminase"
                     /protein_id="HCS1968251.1"
                     /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID
                     FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA
                     KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP
                     FPGSVYHVPYPSDLHGISTQDSLDAIECLFKSDIEAKQVAAIIFEPVQGEGGFNVAPK
                     ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLS
                     GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL
                     IDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG
                     NVIRFLYPLTIPDAQFDVAMKILQDALSD"
     gene            complement(4790..6070)
                     /gene="puuB"
                     /locus_tag="OQQ76_001717"
     CDS             complement(4790..6070)
                     /gene="puuB"
                     /locus_tag="OQQ76_001717"
                     /EC_number="1.4.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylputrescine oxidase"
                     /protein_id="HCS1968252.1"
                     /translation="MTEHTSSYYAASANKYVPFDTLNESITCDVCVVGGGYTGLSSAL
                     HLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTAPMLGSMMFE
                     GGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAI
                     RREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVV
                     RTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQVITTERLSEDLACSLIPKNY
                     CVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDY
                     RWTGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAF
                     ANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV"
     gene            complement(6072..7559)
                     /gene="puuC"
                     /locus_tag="OQQ76_001718"
     CDS             complement(6072..7559)
                     /gene="puuC"
                     /locus_tag="OQQ76_001718"
                     /EC_number="1.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase PuuC"
                     /protein_id="HCS1968253.1"
                     /translation="MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVT
                     QAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA
                     LLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGV
                     IAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLN
                     VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIV
                     FADCSDLQKAASSTAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHP
                     LDPATTMGTLIDCAHADSVHSFIREGEGKGQLLLDGRNAGLAAAIGPTIFVDVDPNAS
                     LSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWMRDLSRAHRMSRRLKAGSVF
                     VNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA"
     gene            complement(7834..8391)
                     /gene="puuR"
                     /locus_tag="OQQ76_001719"
     CDS             complement(7834..8391)
                     /gene="puuR"
                     /locus_tag="OQQ76_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001464354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator PuuR"
                     /protein_id="HCS1968254.1"
                     /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK
                     VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN
                     PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT
                     GIPHSFSNTSAGICRIISAHTPTTF"
     gene            complement(8418..9181)
                     /gene="puuD"
                     /locus_tag="OQQ76_001720"
                     /pseudo
     CDS             complement(8418..9181)
                     /gene="puuD"
                     /locus_tag="OQQ76_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415814.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase"
     gene            9393..10811
                     /gene="puuA"
                     /locus_tag="OQQ76_001721"
     CDS             9393..10811
                     /gene="puuA"
                     /locus_tag="OQQ76_001721"
                     /EC_number="6.3.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-putrescine ligase"
                     /protein_id="HCS1968255.1"
                     /translation="METNIVEVENFVQQPEERRGSAFTQEVKRYLERYPNTQYVDVLL
                     TDLNGCFRGKRIPVSSLKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVP
                     VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL
                     EFYLLDRQRDAEGYLQPPCAPGTDDRNTHSQVYSVDNLNHFADVLNDIDELAQLQLIP
                     ADGAVAEASPGQFEINLYHTDNVLEACDDALALKLLVRLMAEKHKMHATFMAKPYEEH
                     AGSGMHIHISMQNNRGENVLSDTEGEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRR
                     FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYRVAGADANPYLVMAAIFAGILH
                     GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN
                     DELLQFERLITETEIEWMLKNA"
     gene            10960..11124
                     /locus_tag="OQQ76_001722"
     CDS             10960..11124
                     /locus_tag="OQQ76_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968256.1"
                     /translation="MPMIKSPHGEGGCVCAPPATDWTPSPLLPLLNRFDFRSTRPQTL
                     LRRGGSNYGY"
     gene            11114..12499
                     /gene="puuP"
                     /locus_tag="OQQ76_001723"
     CDS             11114..12499
                     /gene="puuP"
                     /locus_tag="OQQ76_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PuuP"
                     /protein_id="HCS1968257.1"
                     /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTF
                     GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMV
                     GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVCVVTFVAILTAANLKSINLVANFN
                     TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF
                     LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA
                     LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH
                     PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN
                     KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL
                     YDGDRTPVSET"
     gene            12633..12878
                     /locus_tag="OQQ76_001724"
     CDS             12633..12878
                     /locus_tag="OQQ76_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmjA family protein"
                     /protein_id="HCS1968258.1"
                     /translation="MNHDIPLKYFDIADEYATECAEPVADAERTPLAHYFQLLLTRLM
                     NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE"
     gene            13191..14834
                     /gene="sapA"
                     /locus_tag="OQQ76_001725"
     CDS             13191..14834
                     /gene="sapA"
                     /locus_tag="OQQ76_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein SapA"
                     /protein_id="HCS1968259.1"
                     /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV
                     NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR
                     DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV
                     RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY
                     QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS
                     QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG
                     TAETAASILPRASWAYDNEAKITEYNPAKSREQLKALGLENLTLKLWVPTRSQAWNPS
                     PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP
                     LLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA
                     SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP"
     gene            14831..15796
                     /gene="sapB"
                     /locus_tag="OQQ76_001726"
     CDS             14831..15796
                     /gene="sapB"
                     /locus_tag="OQQ76_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapB"
                     /protein_id="HCS1968260.1"
                     /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW
                     VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGIT
                     RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA
                     LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA
                     ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI
                     RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR"
     gene            15783..16673
                     /gene="sapC"
                     /locus_tag="OQQ76_001727"
     CDS             15783..16673
                     /gene="sapC"
                     /locus_tag="OQQ76_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapC"
                     /protein_id="HCS1968261.1"
                     /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI
                     FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA
                     FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH
                     AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT
                     EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS
                     VLLVNLLGDGVRRAIIAGVE"
     gene            16673..17665
                     /gene="sapD"
                     /locus_tag="OQQ76_001728"
     CDS             16673..17665
                     /gene="sapD"
                     /locus_tag="OQQ76_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapD"
                     /protein_id="HCS1968262.1"
                     /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS
                     GKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL
                     DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT
                     EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD
                     LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN
                     TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE"
     gene            17667..18473
                     /gene="sapF"
                     /locus_tag="OQQ76_001729"
     CDS             17667..18473
                     /gene="sapF"
                     /locus_tag="OQQ76_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapF"
                     /protein_id="HCS1968263.1"
                     /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA
                     IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN
                     PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG
                     LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS
                     DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR"
     gene            18541..18894
                     /locus_tag="OQQ76_001730"
     CDS             18541..18894
                     /locus_tag="OQQ76_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HCS1968264.1"
                     /translation="MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVG
                     SYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAV
                     LEIILQELNRRSPSP"
     gene            19262..20050
                     /gene="fabI"
                     /locus_tag="OQQ76_001731"
     CDS             19262..20050
                     /gene="fabI"
                     /locus_tag="OQQ76_001731"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HCS1968265.1"
                     /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL
                     KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG
                     DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG
                     LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR
                     TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK"
     gene            20195..21322
                     /locus_tag="OQQ76_001732"
     CDS             20195..21322
                     /locus_tag="OQQ76_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309887.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMD domain-containing protein"
                     /protein_id="HCS1968266.1"
                     /translation="MEQRHITGKSHWYHETQSSTAEYDVLPLVPEAAKVSDPFLLDVI
                     LDEETLAPFLSWLVPARVLAVELFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC
                     NYYSARLTPLPGPDSSRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVDLTAWDC
                     VIINQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESIRWRSSYEV
                     EKLPEEYTKSSTAELCQLAETLSLHPISLSLLERLLNSTRVNTQPDNKLAALLCARIN
                     GSPACFAACMDSSNEYKKISPLLRKGENEINQWADRHSVEHATVQAIQWLTRAPDRFS
                     TAQFSPLLEHEQSSTQIINLLVWSGLCGWINRLKIALGETY"
     gene            21390..>23169
                     /gene="rnb"
                     /locus_tag="OQQ76_001733"
     CDS             21390..>23169
                     /gene="rnb"
                     /locus_tag="OQQ76_001733"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HCS1968267.1"
                     /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY
                     FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD
                     HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
                     WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP
                     DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN
                     EVRPVLACRMTLSADGAIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA
                     EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA
                     MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
                     KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH
                     RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA
                     EIVDISRGGMRVRLVDNGAIAFIPAPF"
BASE COUNT         5222 a         6137 c         6047 g         5763 t
ORIGIN      
        1 aagacgcgtt acaagtttct gtaaatgagt tgcggtaaat gttccaccgt agatttcgtc
       61 caggtaatca gtaattttct gtttcatgtt gcctttcagt ggtagcgatc ccatgaaacg
      121 agagactact ccgcagaaaa taaactgtca attgagcaca agagttttag tcacgcagga
      181 aatcattttt taccagggaa aaagcgtatt tgtgagctga cgcaaataat ctatggggat
      241 gtaaataagg tgtgacagaa aaaaaacggc gcataagcgc cgctcatggt gaattctttt
      301 aacctttgac cttcggcatt gcgatgtctt tcaagccacc ggcgttctca acgtgggtat
      361 atcccatctc gctaaggatc tcttttgctt gccctgactg gcgtccggca ttgcaataca
      421 ctttcacggt gtcgttttta tccggaacgg cggtggcaat gcgctctttc acttccttca
      481 ggggaatatt gatggccccc tgaacgtgct cttgctgata ctgctctgga acacgaacat
      541 cgatccagtg ttcagcggcg aaaacgggca gtgaaaacac cagtgccaga gcaagtaagc
      601 cttttttaaa catgtaagca tccttctatg gatgaaaatt gccatccatt atacgcctga
      661 gatttaacaa tttttgcgaa actcccctca ccttttataa cgctgtgcca gtttattagc
      721 agcccgactt aacagcggtt ccagcgccac agccagcaac attttcagcg gtcggcgagc
      781 aactgatttt atcgcccagc ccgctacacc cgccgggcca tagcgcagtg cggtaagaag
      841 taccagcttg cctgctaatt tgaaaccaag ctttaccttt tgcccggcct gttgccagcg
      901 agtattcata actttcctca cagttgacgg aaacggctac gtaacgtgaa agtatcggaa
      961 gtgacataac gttccatctc gcgtaaacgc gtttcacttg ccgccagttc acggtcgact
     1021 tcatccagca attcgctgct ggagggtagc tgctcaccaa aggccatgtt gtccggcatt
     1081 ggatcaagcg caaatgacaa aatgatgtaa gcaaccaggg taaacagcgc cagaccgaag
     1141 aaaatcgaca gcaccaccag gatacgcacc agttttaccg gtacatcaaa atagttggca
     1201 atcccggcgc agacgccgcg gaccatgccc tgctgtggaa tacgccataa ttttttattg
     1261 agattaatgc ccgccattag cgatccctcc agttcggatg ttctgcatca agaatagatt
     1321 ccagcgcctg aatacgttct cgcatccgtt ttgcttcatc agccagttgc gctaatcgct
     1381 gctgctcact ttgcgacaat tcactgcgac cagaacgatt gctgtaatgc agccataacc
     1441 agatcggtaa aacaaacagc acaaaaatgg ttaacggaat agccagaaat agcgcgctca
     1501 taagtactcc ttagacgatg agcggcggcg cgttcggagg ccgcctggat gttattattg
     1561 attgtcttgc ttcattttgg cttttaattg tgccagttgt tcgctgattg catcatcggc
     1621 tttcagttcg gcaaactgat cgtccagcga tttttgttta ccgaagctgt ggctttctgc
     1681 ttccgcttcc atctggtcaa tacgacgttc gaaagattcg aaacgagcca ttgcttcatc
     1741 cagtttgcca ctgtccagct gacgacgcac atcgcgcgac gagtttgccg cctgatggcg
     1801 taacatcaat gcctgctggc gagcgcgtgt ttcgctcaat ttgttttcca gctcaccgat
     1861 ctctttcttc atgcgtgcca gcgtatcgtc caccagcgtc acttcatgtt ccagactctt
     1921 aatcagatcg gtcagtttct gtttttcaat taacgccgca cgtgccaaat cctctctctc
     1981 tttcagcagc gccagttcgg ctttttcctg ccattcaact tcacgcgccg acgcttgttc
     2041 aatacggcga gtcagctgtt tcttttctgc caacgcacgc gccgaagtag aacgtacttc
     2101 aaccagagta tcttccatct cctggatcat cagacgcacc agtttctgtg gatcttccgc
     2161 tttctctaac agagcgttga tgttggcatt cacgatgtcg gcaaagcgag aaaaaatacc
     2221 cataatgttg tcctcttgat ttctgcgttc aggattgtcc tgctgaactg ttaatacaat
     2281 ttgcgtgcca attttttatc tttttgattt ataaagatct gattgaagaa tcatcagcaa
     2341 catgccagga tgaattagcg aattacacta acaagtggcg aatttcatca tggcagaata
     2401 caaagataat ttacttggtg aggcgaacag ctttctcgaa gtgctggaac aggtttcgca
     2461 tctcgcaccg ctggacaaac cggtgctcat catcggcgaa cgcggcaccg gtaaagagct
     2521 gattgccagc cgcctgcatt atctctcctc ccgttggcaa gggccgttta tttcccttaa
     2581 ctgcgcggcg ttaaatgaaa atctgctgga ttccgaactg tttggtcacg aagcgggggc
     2641 gtttaccggt gcgcaaaaac gtcatccagg gagatttgaa cgtgccgacg gcggtacgct
     2701 atttcttgat gaactcgcta cggcaccgat gatggtgcag gagaaattat tgcgcgtgat
     2761 tgagtacggt gaactggagc gcgttggcgg cagccagcca ttgcaggtga atgtgcggtt
     2821 ggtatgcgcg acgaatgccg atctcccggc gacggtcaat gaaggcactt ttcgcgctga
     2881 cctgctcgac cgactggctt ttgatgttgt acaactgcca ccactgcgcg agcgcgaaag
     2941 cgacataatg ttgatggcag aacactttgc catccagatg tgtcgggaaa tcaagctgcc
     3001 tctgttcccg gggtttacgg agcgcgccag agaaacattg ctgaattatc gttggccggg
     3061 aaatattcgt gaattgaaaa acgtggtgga acgttcagtg tatcgccacg gcaccagcga
     3121 ttatccgctt gatgacatca ttattgatcc ctttaaacgg cgtccgcctg aagacgctat
     3181 cgccgtttca gaaaccacct cgcttccaac actgccgctg gatttacgtg agtttcagat
     3241 gcagcaggaa aaagagttgc tgcaactcag tttgcaacaa gggaaatata accagaagcg
     3301 cgcggctgaa ttactggggt taacttatca tcagttccgc gcgttgttga aaaagcacca
     3361 gatttagcga agttgagcaa tacaacttgc cggatgcggc gtgaatgctt tattcggcat
     3421 acataatcaa taagtcgttt gcaggcctga taagcgcagc gcatcagaca ttattgcgtt
     3481 gggctattaa tcgctcagcg catcctgcaa aattttcatt gccacatcga attgcgcatc
     3541 cgggatggtc agcggataca ggaagcgaat cacgttgccg tatgcgccac aggtcagcag
     3601 gagcagcccc tgcgccagcg cgcgttgctg gattttctgt gcaatcgccg ctgacggctc
     3661 gcccgtttgc ggatcgttaa actctgccgc aatcatcgac cccaggccgc gtaccgcagc
     3721 aatggccgga acgctttctt tggcatcaat caacgtgttt ttgagacgct ggcccagttg
     3781 attcgcgcgt tcgcagagtg attctttgtc gataatattg agcaccgcgt gcgcggcagc
     3841 caccgccagc gggttcccgg cgtaggtgcc acccaacccg cccggcgcgg gcgcgtccat
     3901 aatattcgcg ttaccgacca cgcccgaaag cggcatcccg cccgcgaggc ttttcgccat
     3961 cgtcattaag tccggcttat cggcgtaatg atccatggca aacagtttac cggtacgcgc
     4021 aaagccgctt tgcacttcat cggcaatcat cacaataccg tgctcgtcgc acaggcggcg
     4081 aatggcggca accagctctt ttggcgcaac gttgaaaccg ccctcgccct gcaccggttc
     4141 gaaaataatg gccgccacct gcttcgcttc aatgtccgat ttaaacaagc attcgatggc
     4201 gtcgagggag tcctgtgttg aaatgccgtg taaatctgac ggataaggta cgtgatacac
     4261 cgaaccaggg aacgggccga agccgatttt gtacggcgca acttttccgg tcagcgccat
     4321 ggtcatatat gtacgaccgt ggaagccgcc gctaaacgca atcacgccag gtcgtccggt
     4381 atgggcgcga gcaattttca ccgcgttttc caccgcttcc gcgccggtag tgaagaatgc
     4441 ggttttagcc tgcccgctca ctggggcaag ggcgttaatt ttctccgcca gcgtgacgta
     4501 gctttcgtac ggcacaatct gatacgccgt gtgggtaaac tgttgcaatt gctgctccac
     4561 cgccgcgacc agatcagggt ggcgatgccc ggtattcagc accgcaatgc ctgcggcgaa
     4621 atcgatgtat tcgttgccct ctacgtcctt cagcgtagcg ttttctgccg actgggcgaa
     4681 gaagttacac atcacgccaa ccccgcgtgg ggtagcagaa agacgacgct gatggaattc
     4741 attgttgctc atgtttcaca ccttttgact cttcactgtt aatcggaaat taaacgccca
     4801 gacgatcgcg caggctgtaa taagccgcgc ccatcgcggt aaatggcacg cgcagcgtgc
     4861 gcccgccggg gaacgggtaa tgcggcagat tggcgaaggc atcgaaacgc tcggcgtcac
     4921 cgcgcagcag ttcagcaatc aaacgcccgg cgaggtgggt acaggtgacg ccgtggccgc
     4981 tgtagccctg catgtaatag atgttggtat cgaggcgacc gaactgcggc atccgtgaaa
     5041 gggtcagcag gaagttgccc gtccagcgat agtcgatttt gacgcccttc agctgcggga
     5101 aggttttcag cagtttcggc acaacaagac gctcaacgtc atccgggtcg cgcgcgccgt
     5161 agaccacgcc gccgccgtac agcaaacggt tgtcggcggt aagacggtag taatcaagca
     5221 gataattaca gtcttccaca cagtagtttt tcgggatcag cgaacaggct aaatcttccg
     5281 acagccgttc ggtggtgatc acctgcgtgc cgcacggcat gctgcgtttc gccagttccg
     5341 gctctacttt atcgcccaga tacgcattcc cggcgacaat cacatacttc gccgtcacct
     5401 gacctttggc agtgcgcaca acggctggcg tggtgtgctg gatctgcgtc acggcagaaa
     5461 gttcatacac gcgcccgccg ttgaggcgga tggcgtccgc ttcgccaatg gcgaggttta
     5521 gcgggtgaat atgcccaccg ctgtgatcca gcagcgcacc ggtatagcga tcgctggcta
     5581 cttcacggcg aatggcgttg gcgtccagca attccagctg tttattgccg tagcgttccc
     5641 agttctcttt ctgctcttca agtgtggcga gctgtttatc attcatcgcc acaaacaggc
     5701 cgccggggcg gtagtcgcag tcaatctgat aacgtttgat acgttcgcgg atgatctcac
     5761 caccttcgaa catcatgctg ccgagcatag gggcggtgtc catgccgtag cttttttcga
     5821 tcacgtcgat gtcgcggctg taggagttca caagctgccc gccattgcgc ccgcttgcgc
     5881 caaagccgat gcgtgaggct tcgagaacca ctacgtcaaa gcccgcttcc gccagatgca
     5941 gcgcggagga gagcccggta tagccgccgc caaccacgca aacgtcgcag gtgattgact
     6001 cattcagggt gtcgaatggc acgtatttat tcgcactggc ggcgtaataa ctgctggtat
     6061 gttcggtcat ttcaggcctc caggcttatc cagatggttt tcagttcggt gaatttttca
     6121 agggcatgca gggatttgtc gcgaccgttg ccgctctgct tatagccgcc aaacggcacg
     6181 gtcatatcgc cgtcgttgta gttattgacg aagacggaac cggctttcag gcggcggctc
     6241 atacggtgcg cgcgggagag gtcgcgcatc cataccgccg cgccaaggcc gtactggctg
     6301 tcgttggcaa gctgtagcgc ctgttcttct gatgtgaaac gcgtgaccac cagcaccgga
     6361 ccgaaaatct cttcgcggct taaggacgca ttcgggtcta catccacaaa gatggtcggg
     6421 ccgatggcgg cagccagccc ggcgttacgg ccatccagca gcagttgccc tttgccttcg
     6481 ccctcacgaa taaagctatg gaccgagtcg gcgtgggcgc agtcgattaa agtgcccatg
     6541 gtggttgcgg ggtcaagcgg atggcccggc tgccagtttt gcgcctgctg ttttaacagg
     6601 gctaagaatt catcggcgat gctctcttcc agcaacaggc gtgttccggc gatgcacacc
     6661 tgaccctggt tgtagaagat gcctgctgcg gtggagctcg ccgctttttg cagatccgaa
     6721 caatcggcga aaacgatgtt ggcgcttttg ccgcccgctt ccagccagac gcgtttcatg
     6781 ttgctgtcgc ccgcatcttt cagcagctgt ttcccggtac gggttgaacc ggtaaaggca
     6841 atggcgtcga tatcgttatg acgcgacagc gcctgccccg cttcatgacc aaaacccgtc
     6901 accacgttca acacaccatc cggcaagcct gcttctttcg ccagccccgc gagacgaatc
     6961 gcactgagcg gtgatttttc agacggtttt agaatcacgc tgtttcccgc cgccagcgcc
     7021 gggccgagtt tccagcaagt cagcaacagc gggaagttcc acggcacgat ggcggcaatc
     7081 acgccgaccg gttcacgcac gatcatcgcc agctcatggc tactggtggt cgccacttcg
     7141 ccatacactt tgtcgatcgc ttcggcgtac cagcgaatgg cgcgcgccgc gccgggaata
     7201 tcatcacgca gactgtgacg aatcggtttg ccggtgtcga gagtttccag cagtgccagc
     7261 tcttcggcgt gggcctccat taaatcggcg agtttattca gtaccgcttt acgtttagcc
     7321 ggagaagaga gtgaccagtc gccgcgttca aatacgccgc gtgctgcgct caccgcacgg
     7381 tcgatatcga cgctcttgcc gcgggcaatt ttcgccagcg gtgcttgggt gaccggatca
     7441 acggtttcaa aggtttcatt ttccgccgca gcagtatatt caccgttaat aaataagcgg
     7501 ttttcaatgg cgagacttaa cgctttatcc tgccagtaag ccagatgatg aaaattcatt
     7561 atgactcctg tttcacgtct atcagatata tgcagtttgt gaacgtaagg gcgcagagat
     7621 ccccgggccg tatgcccgtt tatttctggc gacattcttt atatacactt catccttcaa
     7681 gccgcctctg ccttggctgc gttcgcaccc ccgaatcact tacctgagta agctcatcgg
     7741 gattcgctca cttgccgcct tgatgcaact tgaatgattt tgtgtataga ttgccgggcg
     7801 cattgcgctt acccggctta cagaacaaaa agattaaaac gtggtgggcg tatgggcgct
     7861 gataattcgg caaatacctg ccgacgtatt actgaaactg tgcgggatgc cggtattaat
     7921 ggcataactt tgacccgcga cgaggtggta atcctgacca ttaatcgtca gaacaatttc
     7981 accttccagt actgtgccta tttcctcacc ctgatgctta attctttccc cagtggttgt
     8041 gcccggctgg tacgtttcaa agatcatcgc cagcgtgcga ttcgggttac cgttatgaac
     8101 cagcttcatt gacacaccct gactgcccat ctcaattaag tcgtcctgat taatgacgac
     8161 ctgcggctca tcaggttttt ccggctcgga aaagaattcc gagagtgaca gaccatacac
     8221 cttcagcagc ttttgcagcg tactgatggc agggctgact ttatcttgtt ctatcgtact
     8281 gatagcactg tgagtcagcc cggagagttc ggcggcacga cgttgtgaaa gcccctgctg
     8341 ctggcggatt tccgacaagc gttttcctgg cgccagtccc tcatcactca tatttgcatt
     8401 tccttaaact gtagtggtca gagtcgctgt ttttcagcga tatggtgctg acaagcggtg
     8461 ataaagccct cgaacaatat acgcgaaagc gcgtactcgc tactgttcca ttccgggtgc
     8521 cactgtacgc ccagcgcaaa aggatgattg atgacgctaa ccgcctcaac taagccatcc
     8581 ggcgagcgag cttcaacacg caaccgtggg ctaacgacct tcgccccttg tccatgtaga
     8641 gagtttaccc aaaagttgct acattcaggt aacaacgcag acagtaatcc cccctcttca
     8701 acctgaactt catgcgacgg tgcatattgc tgttccaccg gcagttcgga tcttcccgat
     8761 gttccagcaa ttcaggctgt tcgcacagct tgcgatgcaa cgaaccaccg gttgccacca
     8821 ccagttcttg taaaccccgg cagatggcga aaatggggat gcgcctttcg agtgcggcat
     8881 taattatcgc catgctcaga agatcacgcc cgggatcggc gtcaggctca tcgccgtttt
     8941 caccatatag gtgcggctgc acattgctgg gactaccagg aagataaatg ccatcgagtt
     9001 tcggcaaaag ttgttcaagt aacgacggtt ccgccagcgc atgtggtagc gcaattggca
     9061 agccgcctgc gtggatgatg gcattcaggt acttttcttg cagagtctgg gtcgcatgac
     9121 ccttaagcct gttcctgcac attacgacac cgataaccgg attgttcatt atattttcca
     9181 tgctcaatct cacaaagtgg actaaattat cgccattact gcgctttaaa tgacctttat
     9241 gttcaatatt ttttcaatct agcagtgggt tttcattttt gaaaactaaa tttaacattt
     9301 gacaaacatt tagtttgcat gcagattcga atggtggtca ttatatttta cgctttgata
     9361 acgagcggaa aacaaaccaa aggcgaagaa tcatggaaac caatatcgtt gaagtagaga
     9421 actttgttca gcagccagaa gagaggcggg gtagcgcctt tacgcaggaa gtgaaacgct
     9481 acctggagcg ctacccgaat acgcaatatg ttgatgtttt acttactgat ttgaatggtt
     9541 gcttccgtgg aaaacgtatc cctgtttcaa gcctgaagaa gttggagaaa gggtgttatt
     9601 tcccggcctc ggtgtttgca atggatattc tgggcaacgt agtagaagaa gcgggtctgg
     9661 gtcaggaaat gggcgagccg gatcgtactt gtgttcctgt tctcggttcc ttaacccctt
     9721 ctgccgccga tccagagttt atcggtcaga tgctcctgac catggtcgat gaagatggcg
     9781 ctccctttga cgttgagccg cggaacgttc ttaaccgcct gtggcagcag ctacgccagc
     9841 gcggattgtt cccggttgta gcggtagagc tggagttcta tttactggat cgtcagcgcg
     9901 acgctgaagg gtatctgcaa ccgccctgcg cgcccggcac cgatgaccgc aatacacaca
     9961 gccaggttta ctccgttgat aacctcaacc acttcgccga cgtgctcaat gatattgatg
    10021 aactggcgca gttacagtta attcccgccg acggtgcggt cgccgaagcc tcgccgggtc
    10081 agtttgaaat caacctttac cataccgata acgtgctgga agcctgcgat gatgcgctgg
    10141 cgctaaaact cctggtgcgt ctgatggcag aaaagcataa gatgcacgcc acttttatgg
    10201 cgaagccgta tgaagagcac gcgggcagcg ggatgcatat ccatatcagt atgcaaaata
    10261 atcgtggcga gaatgtgctt tctgacacag aaggcgaaga ttcgccgctg ctgaaaaaga
    10321 tgctcgccgg gatgattgac ctgatgccgt cgtcgatggc gttgctggca ccaaacgtga
    10381 actcgtatcg ccgcttccag ccgggaatgt atgtaccgac gcaggcgtcg tggggccata
    10441 acaaccgcac cgtcgccctg cgtattccgt gcggcgaccg tcataatcac cgcgtggaat
    10501 atcgcgtggc gggtgccgat gccaacccat atctggtgat ggcagcgatt tttgccggta
    10561 ttttgcatgg ccttgataac gagctgccgt tgcaggaaga agtcgaaggc aacgggctgg
    10621 aacaggaagg cttacccttc ccgattcgcc agagcgatgc cctgggtgag tttatcgaga
    10681 atgatcacct gcgccgctat ttaggcgaac ggttttgcca tgtgtatcac gcctgtaaaa
    10741 atgatgagct gttgcagttt gagcgcctca tcacagaaac agaaattgag tggatgttga
    10801 aaaacgcata gtaccccttg cggggttgtt tcatcgacct gagcggagcc aggcctgaca
    10861 tttgctggta atccagacat ttcccggatg tcgcgttatg gagcgcaggc ggcaacgggc
    10921 ttccgttaac gattaagact gtaacgagga aatgagatga tgccgatgat taaatccccg
    10981 catggcgagg gaggctgcgt atgcgcccct cctgctactg actggactcc gtcccctttg
    11041 cttcccttgc taaacaggtt tgatttcagg tcgacacgac cgcaaacctt attacgcagg
    11101 ggaggcagca attatggcta ttaattcacc actgaatatt gctgcgcaac ccggcaaaac
    11161 ccgtctgcga aaatcactga aattgtggca ggtggtgatg atgggtctgg cctatctcac
    11221 gccgatgacc gtatttgata cttttggtat tgtctccggc attagcgacg gtcacgttcc
    11281 ggcgtcctat ttgctggcgc tggcgggcgt gctgtttacc gctatcagct acggcaaact
    11341 ggttcgccag tttccggagg ccggttcggc ctatacctac gcgcaaaagt cgattaaccc
    11401 gcacgtcgga tttatggtcg gctggtcatc gctgctggat tatctctttt tgccgatgat
    11461 caacgtcttg ttggcgaaaa tctatctctc cgccctcttc ccggaagtgc cgccgtgggt
    11521 gtgcgtagta accttcgtcg ccattttaac cgccgcgaat ctgaagagca tcaacctagt
    11581 cgctaacttc aataccctgt ttgtactggt gcaaatctcc atcatggtgg tgtttatctt
    11641 cctggtagtt cagggactgc ataaaggaga aggcgttggc accgtctggt cacttcagcc
    11701 gtttatcagc gagaacgcgc acctgatccc gattattacc ggggcgacga ttgtctgttt
    11761 ctccttcctc ggtttcgatg cggtgaccac gctttcggaa gagacgccgg acgccgcacg
    11821 cgtgatcccg aaagccatct tcctgacggc ggtctacggt ggcgttatct ttatcgcggc
    11881 gtcgttcttt atgcagctgt tctttcccga tatcagccgc tttaaagatc cggatgccgc
    11941 actgcctgaa attgcgctgt acgtcggcgg caagctcttc cagtcgattt tcctctgcac
    12001 cacgtttgtg aacacgttag cctctggcct ggcttcacat gccagcgtgt cgcgtctgct
    12061 gtatgtgatg gggcgtgaca atgtgtttcc ggagcgcgtg tttggctatg tgcacccaaa
    12121 atggcggact ccggcactca acgtcattat ggtcgggatt gtcgcgttgt cggcgctgtt
    12181 cttcgattta gttaccgcca cagcgttaat taacttcggt gctctggtgg cgtttacctt
    12241 cgtgaatctg tcggtgttta atcatttctg gcggcgtaaa ggaatgaata aaagctggaa
    12301 ggatcacttc cactatttgc tgatgccgct ggttggcgcg ctgacggtgg gtgtgctgtg
    12361 ggttaacctc gagtcaacgt cactgacact cggtctggta tgggcttcgt taggcggcgc
    12421 atatttatgg tatctgatcc gccgctatcg caaagtgccg ttgtatgatg gtgacagaac
    12481 gccggtgagt gaaacgtaat agtcggatgc gcggcacatt atcctgcctg agggtaatgc
    12541 accgcgccat taactataaa aagatgtatg acccggatca cgagtgctat catccgccct
    12601 tatgcttagc gcattaaccc caggggcaaa taatgaacca tgatatcccg ctaaaatatt
    12661 ttgatattgc cgatgagtac gcgaccgaat gcgcagagcc tgtcgcagac gctgaacgca
    12721 caccgctggc ccactacttc cagttactgc tcacccgttt gatgaacaat gaagagatca
    12781 gcgaagaagc ccaacatgaa atggctgctg aagcggggat taatcccgta cgcattgatg
    12841 agatcgcaga gtttttgaat caatggggta atgagtaatt atttaattgc agacgatcgg
    12901 tcagtatcgt tgtccggata aagcgttcac gccgcatccg gctaacaatg acacgcactg
    12961 cagcgtgctt taatgggttt ctcacgatcg taccgctctg ctcctcgcta agttgttctg
    13021 tgagttatag ttatagagaa agcacgggta cgaatgttga acagatggcg acgccacctg
    13081 ttcaacgacc aaccacacgg ccctcattac gccccctgaa cacaaacggt aatggcaaat
    13141 gtcattaaat attagtaaga tagcctcttt acataaaatc ccttaatatt atgcgccagg
    13201 tattatcgtc tcttttggtg attgctggac ttgtgagtgg tcaggcaatc gccgcgcctg
    13261 aatccccccc gcatgctgat atccgcgaca gcggttttgt ctattgcgtc agcgggcaag
    13321 tcaacacctt taacccatcc aaagcgagca gtgggttaat tgtcgatacc cttgccgccc
    13381 agttttatga tcgactgctg gatgtcgatc cctataccta tcgcctgatg ccggaacttg
    13441 ccgaaagctg ggaagtactc gacaacggcg cgacctatcg cttccacctg cgtcgcgatg
    13501 ttccgtttca aaaaaccgac tggtttactc ccactcgtaa aatgaatgcc gacgatgtgg
    13561 tgtttacctt ccagcgaatt tttgaccgca acaacccgtg gcataacgtc aacggcagca
    13621 acttccccta cttcgacagc ctgcaatttg ccgataacgt gaaaagcgtc cgcaaactgg
    13681 ataatcatac cgttgagttc cgactcgccc agccggatgc ttcttttttg tggcacctcg
    13741 caacccatta tgcttcggtc atgtcggcag aatatgcccg gaagttagag aaagaagatc
    13801 gccaggagca actcgaccgt caaccggtcg gcaccggtcc gtatcagttg tcggaatacc
    13861 gcgccgggca atttattcgc ctacaacgtc atgatgactt ctggcgcggt aaaccgttaa
    13921 tgccgcaggt agtggtggat ttaggctccg gcggcaccgg acgtctgtcg aaactcctga
    13981 ccggggaatg cgacgttctg gcctggcctg ctgccagcca gctatccatt ttgcgtgatg
    14041 acccgcgctt gcgtttaacg ctgcgtcctg ggatgaacgt cgcctatctg gcatttaaca
    14101 ccgccaaacc gccgctaaat aatcccgctg tccgccatgc actggcactg gcgattaata
    14161 accagcgcct gatgcaatcc atctattatg gtacggctga aacggcggcc tctattttac
    14221 cgcgcgcctc gtgggcctat gacaacgagg ctaaaattac tgaatacaat ccggcgaaat
    14281 cgcgcgaaca gttgaaggcg ttggggctgg aaaacttaac gctgaaactg tgggtgccca
    14341 cacgttcgca ggcgtggaac cccagtccac tgaaaactgc cgaactgatt caggcggata
    14401 tggcgcaggt tggcgtaaaa gtggtgattg tgccggtaga aggtcgcttt caggaggcgc
    14461 ggttgatgga tatgagccat gatctgacgt tatccggttg ggcgacggac agtaacgacc
    14521 cggacagttt cttccgtcct ttactgagct gtgcggcaat tcattcacag accaacctcg
    14581 cccactggtg cgatccgaaa ttcgacagcg tgttgcgtaa ggcgctctcc tcgcagcagc
    14641 tggcggcgcg tattgaagcc tatgacgaag cgcagagtat tctggcgcag gaattgccca
    14701 ttttgccgct ggcgtcgtca ttgcgtttgc aggcctatcg gtacgatatc aaaggtctgg
    14761 tacttagccc gtttggtaac gcctcctttg ctggggtgta tcgcgagaaa caggatgagg
    14821 tgaaaaaacc atgattatct tcaccttacg ccgcattttg ttattgattg tcaccttgtt
    14881 cctgctgacc ttcgttggct tcagcttgag ctatttcacc cctcatgcgc cgttacaagg
    14941 cgcgtcactg tggaatgcct gggtgttctg gtttaacggc ctgatccact gggattttgg
    15001 tgtttccagc attaacggtc aaccgattgc cgaacagtta aaagaggtct tcccggcgac
    15061 gatggaactg tgcatcctcg ccttcggttt tgcgctgatt gttggcatcc ccgtggggat
    15121 gattgccggg attacgcgcc ataagtggca ggataacttg atcaacgcca tcgccttact
    15181 gggcttttca atcccggtgt tctggctggc gcttctgttg acgctgtttt gttcactcac
    15241 gctaggttgg ttgcccgttt cagggcgttt cgatctgctc tacgaagtga aaccgattac
    15301 cggttttgcg ttgattgatg cctggctttc ggactcacca tggcgggatg aaatgatcat
    15361 gagcgcaatc cgccatatga tattgcccgt gatcaccctg tcggttgcgc caacaactga
    15421 agtgatccgc ctgatgcgta tcagcactat cgaagtgtat gaccagaact atgtaaaagc
    15481 ggcggcgacc cgcggtttgt cgcgctttac tattttgcgt cgccacgttc tgcataacgc
    15541 gttaccgccg gttattcctc gcctgggctt acagttttcc accatgctga cgctggcgat
    15601 gatcaccgaa atggttttta gctggccggg tttagggcgc tggttaatta acgccatccg
    15661 ccagcaggat tacgcagcca tttccgccgg agtgatggtg tgtggctcac tggtcattat
    15721 tgttaacgtg atttctgata ttttgggtgc catggctaac cctctgaaac ataaggaatg
    15781 gtatgcctta cgatagcgta tacagcgaaa agcgcccgcc gggcacgctg cgtaccgcct
    15841 ggcgcaaatt ttatagtgac gcctctgcga tggtcggcct gtacggctgc gcggggctgg
    15901 ctgtactgtg tatttttggc ggctggtttg cgccttacgg catcgaccag caatttctcg
    15961 gttatcaatt attgccgcca tcatggtcgc gctatggcga agtttctttc ttcctgggga
    16021 ctgacgacct cggacgcgat gttttaagcc gtttactgag cggagctgcg ccaaccgtgg
    16081 gtggcgcatt tgtggtgacg cttgccgcga cgatctgtgg cctggtactg ggcaccttcg
    16141 ccggggcgac acacggcctc cgctcagcgg tgcttaacca tattctggat accttactgg
    16201 cgatcccttc gctgctgttg gcaattatcg ttgtagcgtt tgccggaccg agtttgtccc
    16261 acgctatgtt tgctgtctgg ctggcattgc tgccgcgtat ggtacgttcg atttacagca
    16321 tggtgcatga cgaactggaa aaagagtacg ttatcgccgc ccgtctggat ggcgcatcaa
    16381 cgctgaatat tctctggttt gctgtgatgc caaacatcac cgccgggctg gtcaccgaga
    16441 tcacccgcgc actatcgatg gcaattctcg atatcgccgc gctgggcttt ctcgatctcg
    16501 gcgcacaact cccctcgcct gaatggggag cgatgctcgg tgatgcgctg gaactgattt
    16561 atgtcgcccc gtggactgtc atgctgccag gtgcggcaat tatgattagc gtgttgttgg
    16621 ttaacctcct tggcgatggc gttcgtcgtg cgattattgc gggggtggaa taatgccatt
    16681 actcgatatt cgtaacctga ccattgaatt taaaaccggt gatgagtggg ttaaagccgt
    16741 cgaccgggta agtatgacct taaccgaagg tgaaatccgc ggtcttgttg gtgaatccgg
    16801 ttccggcaag agtttgattg cgaaagcgat ttgtggggtg aataaagata actggcgtgt
    16861 tactgctgac cgtatgcgtt ttgatgatat cgatttgctg cgtctctccg cacgcgaacg
    16921 gcgcaaactg gttggccata acgtgtcgat gattttccag gaaccgcagt cgtgtcttga
    16981 cccttcagaa cgtgtgggtc gccagttgat gcaaaacatc ccagcctgga cctataaagg
    17041 ccgttggtgg cagcgttttg gctggcgcaa acgccgtgcc attgaactgc tgcaccgcgt
    17101 ggggattaaa gatcacaaag atgcgatgcg cagttttccc tatgagttga ccgaaggtga
    17161 atgtcagaaa gtgatgatag ccattgcact ggcgaatcaa ccgcgtctgc tgattgctga
    17221 cgaaccgacc aactcaatgg agccaacaac ccaggcgcaa atctttcgcc tgctgacgcg
    17281 tctcaaccaa aacagcaata ccactatttt gcttatcagc catgacttac aaatgcttag
    17341 ccaatgggcg gataaaatta acgtgcttta ctgcggtcaa acagtggaaa ccgcgccgag
    17401 taaggagttg gtgacgatgc cacatcatcc ttatacccag gcgctgatcc gcgcgatacc
    17461 agacttcggc agcgcgatgc cgcataaaag tcgcctcaat actctgcccg gcgctatccc
    17521 actgctggaa cagttaccga ttggttgtcg tctggggcca cgttgcccgt atgcacaacg
    17581 agaatgcatt gtgacgccac gtttgacggg ggcgaaaaat catctctatg cctgtcattt
    17641 cccgctgaac atggagaaag agtgagatga tcgaaacgct gcttgaagtg cgtaatttaa
    17701 gtaaaacgtt ccgctaccgg accggctggt ttcgccgtca gaccgtagaa gcggtaaaac
    17761 ccttgagctt tacgctacgt gaaggccaga cactggcgat tattggcgag aatggttcgg
    17821 gtaaatccac gctggcaaaa atgctggcgg gaatgataga gcctaccagc ggcgagttat
    17881 tgattgacga tcatccactg cattttggcg attattcctt ccgcagtcag cgtattcgca
    17941 tgatttttca ggatccttcg acctcgttga atccccgtca acgtatctcg caaattctgg
    18001 attttccact gcgcctgaac accgacctgg aaccggaaca gcgtcgcaaa cagattattg
    18061 aaacgatgcg tatggttggg ctgctaccgg atcacgtcag ttactatccg catatgttgg
    18121 cacccggaca aaaacagcgt ctgggtctgg cgcgcgcgct gatattgcgc ccaaaagtca
    18181 ttattgccga tgaagcactc gcttcactgg atatgtcgat gcgttcgcag ttgattaatc
    18241 tgatgctgga gttacaggaa aaacagggca tttcgtatat ttatgttacc cagcatatcg
    18301 gaatgatgaa gcacattagc gaccaggtgc tggtgatgca tcagggcgag gttgtcgagc
    18361 gaggcagcac cgcggatgtg ctggcatcgc cgctgcatga actcaccaaa cggctgattg
    18421 ccgggcactt tggcgaagca ttgacagcgg atgcgtggcg taaagatcgc taattttctg
    18481 aatcctcctt ccagattatc cacctcattc tgacaagaga ttaaatcttg tcagaatgag
    18541 gtgatggata aaataaaatc aaatgcgcgt gatttaagac gcaatctcac tttgcaggaa
    18601 cgaaagctct ggcgatatct tcgcagccga cgttttggtg atttcaaatt tcgccgtcaa
    18661 catccggtgg ggagctacat tctcgatttt gcttgctgct cggcgcgcgt agtcgttgag
    18721 ctggatggtg ggcagcatga tttggcagtt gcctatgata ccaggcgcac tagctggctt
    18781 gagtcgcagg gctggaccgt gctgcgtttc tggaataacg agattgattg taatgaggag
    18841 gcggtgctgg agattattct gcaggaactg aaccgccgat caccctcacc ctgaaagggc
    18901 gagggggccg accgagccga atagctgttg tggtgaaaac atggagacag tgctggagaa
    18961 tattcggcaa ggtctgaacc atcccagcca tcgccataaa agggttaggg gctgtatgag
    19021 cctgtttgtt gctggggtaa caatatttgc acaatatggt cccctcgccc ctctggggag
    19081 agggttagtg taaggggaaa agcgcccacc ctgccgcagc ctgctccggt cggacctggc
    19141 aactatagct actcacagcc aggttgatta taataaccat ttatctgttc gtactgttta
    19201 ctaaaacgac gaatcgcctg attttcaggc acaacaagca tcaacaataa ggattaaagc
    19261 tatgggtttt ctttccggta agcgcattct ggtaaccggt gttgccagca aactatccat
    19321 cgcctacggt atcgctcagg cgatgcaccg cgaaggagct gaactggcat tcacctacca
    19381 gaacgacaaa ctgaaaggcc gcgtagaaga atttgccgct caattgggtt ctgacatcgt
    19441 tctgcagtgc gatgttgcag aagatgccag catcgacacc atgttcgctg aactggggaa
    19501 agtttggccg aaatttgacg gtttcgtaca ctctattggt tttgcacctg gcgatcagct
    19561 ggatggtgac tatgttaacg ccgttacccg tgaaggcttc aaaattgccc acgacatcag
    19621 ctcctacagc ttcgttgcaa tggcaaaagc ttgccgctcc atgctgaatc cgggttctgc
    19681 cctgctgacc ctttcctacc ttggcgctga gcgcgctatc ccgaactaca acgttatggg
    19741 tctggcaaaa gcgtctctgg aagcgaacgt gcgctatatg gcgaacgcga tgggtccgga
    19801 aggtgtgcgt gttaacgcca tctctgctgg tccgatccgt actctggcgg cttccggtat
    19861 caaagacttc cgcaaaatgc tggctcattg cgaagccgtt accccgattc gccgtaccgt
    19921 tactattgaa gatgtgggta actccgcggc attcctgtgc tccgatctct ctgccggtat
    19981 ctccggtgaa gtggtccacg ttgacggcgg tttcagcatc gctgcaatga acgaactcga
    20041 attgaaataa tcattctgtt ggtaaatatt gggcggcgtt ctgccgcccg ttatctctgt
    20101 tatacctttc tgatatttgt tatcgccgat ccgtctttct ccccttcccg ccttgcgtca
    20161 ggataacgat ttcctttacg accaaggagc gcccatggaa caacgccaca tcaccggcaa
    20221 aagccactgg tatcatgaaa cgcaatccag tactgcggag tatgacgttc tgcctctggt
    20281 cccggaagcc gcaaaggtca gcgatccctt tctgctcgac gtgatccttg atgaagaaac
    20341 gctggctccc ttcctttcat ggctggtccc tgcgcgcgtt cttgcagtgg aattgttccc
    20401 tgaccagctt accgtgaccc gttcacagac cttcaccgct tatgaacgct tgtctacggc
    20461 cctgacggtt gctcaggttt gcggcgtcca gcggttatgt aactactatt cggcgcgact
    20521 tacgccgctc cccgggcctg attcctctag ggaaagcaat cataggttgg cacaaatcac
    20581 gcaatatgcc cgccaactgg ctagctcgcc ttctattatc gacaaccgat cgcgccagca
    20641 tctgaatgac gtcgatctta ctgcctggga ctgtgtgatc attaaccaaa tcattggttt
    20701 tattggcttt caggcgcgga ccattgcgac atttcaggct tatctcgggc acccggtacg
    20761 ctggttaccc ggtctggaaa tacaaaacta cgccgacgcg tcactgtttg ctgatgaatc
    20821 aatacgctgg cgaagcagct atgaggtgga aaaactacct gaagagtaca caaaaagttc
    20881 aacagcagaa ctttgccaac tggccgaaac actctctctc caccctattt cactttccct
    20941 tctcgaaagg ttgttaaaca gtacacgggt taatacacag ccggataata agcttgcggc
    21001 gttgttatgc gcgcggataa atggcagtcc tgcttgtttt gccgcctgta tggattcatc
    21061 aaatgaatat aaaaaaatca gcccccttct gcgcaagggc gaaaatgaaa ttaaccaatg
    21121 ggctgaccgt cattctgttg agcacgctac cgttcaggcg atacaatggc tgacccgagc
    21181 acccgatcgc tttagcaccg cccagttcag ccctttactc gaacacgaac aatcatcaac
    21241 gcagattatt aatctgctgg tatggagcgg gctgtgtggc tggataaatc gcttaaaaat
    21301 cgcgttgggt gagacatatt aaccttgccg cgtcagacag attcgcgtaa aactgtcagc
    21361 cgctctaatg gccaccaaaa tagacaatta tgtttcagga caacccgctg ctagcgcagc
    21421 ttaaacagca actgcattcc cagacgccac gcgctgaagg ggtggtaaaa gccacagaaa
    21481 aaggctttgg cttcctggaa gtcgacgcgc aaaaaagtta tttcattccg ccgccgcaga
    21541 tgaaaaaagt catgcatggc gaccgaatta tcgcggtgat ccacagtgaa aaagaacgtg
    21601 aatccgcaga gccagaagaa ctggttgaac cgttcctgac tcgtttcgtg ggtaaagttc
    21661 agggcaaaaa tgaccgtctg gccatcgttc ctgatcatcc actcttaaaa gacgccattc
    21721 cttgccgcgc agcccgtggc ctgaaccacg agtttaaaga aggcgactgg gcggttgccg
    21781 aaatgcgccg tcatccgctg aaaggcgatc gttctttcta tgctgaattg acacaataca
    21841 tcacttttgg tgacgaccac tttgtaccgt ggtgggttac acttgcgcgc cataatctgg
    21901 aaaaagaagc accagacggc gtcgctaccg aaatgctcga tgaaggtctg gttcgtgaag
    21961 atctgaccgc gctggatttt gtcaccatcg acagtgccag cacagaagat atggatgacg
    22021 cccttttcgc taaggcgttg ccggatgaca aacttcagct gattgtggcg attgccgatc
    22081 caaccgcgtg gattgctgaa ggcagcaagc tggacaaagc cgcgaaaatt cgcgcattca
    22141 ccaactatct gcctggcttc aacatcccta tgctgcctcg cgagctttct gacgatctct
    22201 gctcactgcg cgccaatgaa gtccgcccgg tactggcatg ccgcatgacg ctctccgctg
    22261 atggcgccat tgaagataat atcgaattct ttgccgccac catcgaatcc aaagcaaagc
    22321 tggtgtatga ccaggtttct gactggctgg aaaataccgg tgactggcag cctgaaagtg
    22381 aagcaattgc cgaacaagtc cgtttgctag cgcaaatttg ccaacgccgc ggcgagtggc
    22441 gtcataacca cgcactggtg tttaaagatc gcccggatta ccgctttatt ctcggtgaaa
    22501 aaggtgaagt gctggatatc gtcgccgagc ctcgtcgcat tgccaaccgt atcgtcgaag
    22561 aagcgatgat tgccgctaac atttgtgcgg cccgcgtact gcgcgataag ctcggttttg
    22621 gcatctataa cgtgcatatg ggctttgatc cggcgaatgc cgacgcgctg gcagcgttgc
    22681 tgaaaacgca cggtctgcat gtcgatgccg aagaagtgct cacgctggac ggtttctgca
    22741 aactgcgtcg tgaactggac gcgcaaccaa ctggtttcct cgacagccgc attcgtcgct
    22801 tccagtcatt tgctgaaatt agcactgaac ccggtcctca ctttggcctc ggtctggaag
    22861 catacgccac ctggacttcg ccgatccgta aatatggcga catgatcaac caccgtctgc
    22921 tgaaagcggt tatcaaaggc gaaactgcga cgcgcccaca ggatgaaatc actgtccaaa
    22981 tggccgagcg tcgccgtctc aaccggatgg cagaacgtga tgttggtgac tggttatacg
    23041 cacgcttcct gaaagacaaa gccgggaccg acacccgttt cgcagcggaa attgtcgata
    23101 tcagccgtgg cggcatgcgt gtgcgtttgg ttgataacgg cgctatcgcc tttattccgg
    23161 cacctttct
//
LOCUS       DAJVUN010000053        23140 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.053, whole genome shotgun sequence.
ACCESSION   DAJVUN010000053 DAJVUN010000000
VERSION     DAJVUN010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23140
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.053"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..463)
                     /gene="yddG"
                     /locus_tag="OQQ76_001734"
     CDS             complement(<1..463)
                     /gene="yddG"
                     /locus_tag="OQQ76_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid efflux DMT transporter YddG"
                     /protein_id="HCS1968268.1"
                     /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS
                     GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATRHQAIEVGMVNYLW
                     PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITT"
     gene            695..3742
                     /gene="fdnG"
                     /locus_tag="OQQ76_001735"
     CDS             695..3742
                     /gene="fdnG"
                     /locus_tag="OQQ76_001735"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:1280..1282,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS1968269.1"
                     /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK
                     EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV
                     NSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS
                     TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIAVDPRFTRTASVADIYAPIR
                     SGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD
                     KSSWNYQFDENGYAKRDETLTHPRCVWNLLKAHVSRYTPDVVENICGTPKADFLKVCE
                     VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLAGQVNYWSNYPKFFVSL
                     MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK
                     NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG
                     SIANSGRWLQWHWKGQDAPSEARNDGEILAGIYHHLRELYQAEGGKGVEPLMKMSWNY
                     KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT
                     GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI
                     QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP
                     LGTNPLHPNVVSNPVVRLYEQDVLRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA
                     QPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI
                     PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA"
     gene            3755..4639
                     /gene="fdnH"
                     /locus_tag="OQQ76_001736"
     CDS             3755..4639
                     /gene="fdnH"
                     /locus_tag="OQQ76_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase N subunit beta"
                     /protein_id="HCS1968270.1"
                     /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA
                     CQVACSEWNDIRDDVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH
                     CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC
                     TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPDG
                     VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY
                     IGIGPNKEVDDDEEDHHE"
     gene            4632..5285
                     /gene="fdnI"
                     /locus_tag="OQQ76_001737"
     CDS             4632..5285
                     /gene="fdnI"
                     /locus_tag="OQQ76_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit gamma"
                     /protein_id="HCS1968271.1"
                     /translation="MSKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLT
                     QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK
                     VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI
                     ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI"
     gene            complement(5336..5620)
                     /locus_tag="OQQ76_001738"
     CDS             complement(5336..5620)
                     /locus_tag="OQQ76_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS1968272.1"
                     /translation="MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTG
                     KAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ"
     gene            complement(5766..6768)
                     /gene="adhP"
                     /locus_tag="OQQ76_001739"
                     /pseudo
     CDS             complement(5766..6768)
                     /gene="adhP"
                     /locus_tag="OQQ76_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415995.4"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
     gene            complement(6902..8599)
                     /gene="maeA"
                     /locus_tag="OQQ76_001740"
     CDS             complement(6902..8599)
                     /gene="maeA"
                     /locus_tag="OQQ76_001740"
                     /EC_number="1.1.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCS1968273.1"
                     /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG
                     LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV
                     IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG
                     LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI
                     IDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA
                     VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQREGLSEEAARQKVFM
                     VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ
                     TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV
                     WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLV
                     LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI"
     gene            complement(8756..8893)
                     /gene="sra"
                     /locus_tag="OQQ76_001741"
     CDS             complement(8756..8893)
                     /gene="sra"
                     /locus_tag="OQQ76_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary-phase-induced ribosome-associated
                     protein"
                     /protein_id="HCS1968274.1"
                     /translation="MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAE
                     K"
     gene            complement(8995..9210)
                     /gene="bdm"
                     /locus_tag="OQQ76_001742"
     CDS             complement(8995..9210)
                     /gene="bdm"
                     /locus_tag="OQQ76_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310112.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-dependent modulation protein"
                     /protein_id="HCS1968275.1"
                     /translation="MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWV
                     EASDNDILSDIYQQTINYVVSGQHPTL"
     gene            9556..9987
                     /gene="osmC"
                     /locus_tag="OQQ76_001743"
     CDS             9556..9987
                     /gene="osmC"
                     /locus_tag="OQQ76_001743"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin OsmC"
                     /protein_id="HCS1968276.1"
                     /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK
                     GTNPEELIGAAHAACFSMALSFMLGEAGFTPTSIDTIADVSLDKVDAGFAITKIALKS
                     EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS"
     gene            complement(10043..10969)
                     /locus_tag="OQQ76_001744"
     CDS             complement(10043..10969)
                     /locus_tag="OQQ76_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1968277.1"
                     /translation="MSDTLLTLRGVHINFPARKNWLGKTTEHVHAINGIDLQIRRGET
                     LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI
                     ITEPLWIAKHSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ
                     PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL
                     GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFF
                     YERCPLATSGCEVRQSLAIREDGRELRCWRAL"
     gene            complement(10962..11948)
                     /locus_tag="OQQ76_001745"
     CDS             complement(10962..11948)
                     /locus_tag="OQQ76_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1968278.1"
                     /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES
                     GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGDDVLNAREKQLRQWRGARVAMIFQEPM
                     TALNPTRRIGLQMMDVIRHHQPISRREARAKAIVLLEEMQIPDAVEVMSRYPFELSGG
                     MRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMA
                     VVSQLCDSVYVMYAGSVIESGVRADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGT
                     VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV"
     gene            complement(11945..12829)
                     /locus_tag="OQQ76_001746"
     CDS             complement(11945..12829)
                     /locus_tag="OQQ76_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D,D-dipeptide ABC transporter permease"
                     /protein_id="HCS1968279.1"
                     /translation="MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLML
                     LMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLV
                     VVAIAGMIGSLLGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIA
                     IVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDI
                     GSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNL
                     FGDGIRDLLDPKAGGKQS"
     gene            complement(12826..13309)
                     /locus_tag="OQQ76_001747"
                     /pseudo
     CDS             complement(12826..13309)
                     /locus_tag="OQQ76_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416003.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(13311..14861)
                     /locus_tag="OQQ76_001748"
     CDS             complement(13311..14861)
                     /locus_tag="OQQ76_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1968280.1"
                     /translation="MKRSIPFRPTLLALVLATTFPVAHAAVPKDMLVIGKAADPQTLA
                     PAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDN
                     AKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFL
                     YTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYP
                     GNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLR
                     VTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATA
                     MQYNHDETKAKAEWDKVTSKPTSLTFLYSDKDPNWEPIALATQSSLNKLDINVKLEKL
                     ANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKL
                     LRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQV
                     FNINTMSK"
     gene            complement(14875..15456)
                     /gene="ddpX"
                     /locus_tag="OQQ76_001749"
     CDS             complement(14875..15456)
                     /gene="ddpX"
                     /locus_tag="OQQ76_001749"
                     /EC_number="3.4.13.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine dipeptidase"
                     /protein_id="HCS1968281.1"
                     /translation="MLDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHK
                     DAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGT
                     AIDLTLRDEHGNILNMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIS
                     SEWWHFELPQAASYPLLADQFTCFISPGTQHVS"
     gene            complement(15714..18113)
                     /gene="dosP"
                     /locus_tag="OQQ76_001750"
                     /gene_synonym="pdeO"
     CDS             complement(15714..18113)
                     /gene="dosP"
                     /locus_tag="OQQ76_001750"
                     /gene_synonym="pdeO"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensing cyclic-di-GMP phosphodiesterase"
                     /protein_id="HCS1968282.1"
                     /translation="MKLTDAENAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKL
                     WGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW
                     TRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQ
                     CNRAFTEMFGYCISEACGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRT
                     GEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGE
                     IICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEVQNAQSWSATIRQRDGAPAGIL
                     QIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHN
                     YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRI
                     EGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDVGKNRDYL
                     LSTAHNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIF
                     AETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRS
                     QNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFK
                     RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAI
                     TSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLK
                     I"
     gene            complement(18138..19519)
                     /gene="dosC"
                     /locus_tag="OQQ76_001751"
                     /pseudo
     CDS             complement(18138..19519)
                     /gene="dosC"
                     /locus_tag="OQQ76_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310122.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DosC"
     gene            complement(19891..21210)
                     /locus_tag="OQQ76_001752"
     CDS             complement(19891..21210)
                     /locus_tag="OQQ76_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 10 protein"
                     /protein_id="HCS1968283.1"
                     /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK
                     PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG
                     INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
                     NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS
                     IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIT
                     KVSHTIKSIKPGIEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD
                     YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING
                     GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS"
     gene            complement(21341..22876)
                     /gene="gadC"
                     /locus_tag="OQQ76_001753"
     CDS             complement(21341..22876)
                     /gene="gadC"
                     /locus_tag="OQQ76_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance gamma-aminobutyrate antiporter
                     GadC"
                     /protein_id="HCS1968284.1"
                     /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF
                     FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG
                     FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF
                     FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE
                     ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT
                     VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK
                     NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL
                     VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV
                     VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND
                     KKH"
BASE COUNT         5706 a         5856 c         5855 g         5723 t
ORIGIN      
        1 tggtggtgat attattgatg atttcatcat aatgtaaccc attctcaccg cctaacaccc
       61 agcagacgcc gaccagggct aataataatc ctggtacaat cagccagttg gttttctgac
      121 cattaaacag aatggcaaag agaattgtca ggctgggcca cagatagttc accataccca
      181 cttcaatcgc ctgatgacgg gtcgccgcat accctaagga aagcgccaga cagatttcat
      241 agctgacgaa taacagactc ccggcgagta aatagccttt cggaatctgc cgaatacgcg
      301 gaaatccaac cgtgaagatt aacagcagcc cgcttaatga atagatagca gctgcgccgc
      361 cgaccgggcc gagcccctcg ctgacaccgc gaatcaatcc taccatcgtg ctccacagga
      421 cgatcgctat tagccctatg agcgttgctt tttgtcgtgt catgctcgct gttttgtctc
      481 tcttgccgtt aaaaattaag ctgaatttta tagcattttt ttaactggcc tgtcaggcag
      541 tggtgcgttt ttctaccgct attgaggtag gtcaatttgc gcaggcggat tattttgtgg
      601 caaacacgtg ttctttttga tttcgcgcaa aaagattcag aattttactg ttagtttcct
      661 cgcgcagtaa tacccctgaa aaaagaggaa agcaatggac gtcagtcgca gacaattttt
      721 taaaatctgc gcgggcggta tggctggaac aacggtagcg gcattgggct ttgcccctaa
      781 acaagcactg gctcaggcgc gaaactacaa attattacgc gctaaagaga tccgtaacac
      841 ctgcacatac tgttccgtag gttgcgggct attgatgtat agcctgggtg atggcgcgaa
      901 aaacgccaga gaagcgattt atcacattga aggtgacccg gatcatccgg taagccgtgg
      961 tgcgctgtgc ccaaaagggg ccggtttgct ggattacgtc aacagcgaaa accgtctgcg
     1021 ctacccggaa tatcgtgcgc caggttctga caaatggcag cgcattagct gggaagaagc
     1081 attctcccgt attgcaaagc tgatgaaagc tgaccgtgac gctaacttta ttgaaaagaa
     1141 cgagcagggc gtaacggtaa accgttggct ttctaccggt atgctgtgtg cctccggtgc
     1201 cagcaacgaa accgggatgc tgacacagaa atttgcccgc tccctcggga tgctggcggt
     1261 agacaaccaa gcgcgcgtct gacacggacc aacggtagca agtcttgctc caacatttgg
     1321 tcgcggtgcg atgaccaacc actgggtgga tatcaaaaac gctaacgtcg taatggtaat
     1381 gggcggtaac gctgctgaag cgcatcccgt cggtttccgc tgggcgatgg aagcgaaaaa
     1441 caacaacgat gcaaccttga tcgctgtcga tcctcgtttt acgcgtaccg cttctgtggc
     1501 ggatatttac gcacctattc gttccggtac ggacattacg ttcctgtctg gcgttttgcg
     1561 ctacctgatc gaaaacaaca aaatcaacgc cgaatacgtt aaacattaca ccaacgccag
     1621 cctgctggtg cgtgatgatt ttgctttcga agacggcctg ttcagcggct acgacgctga
     1681 aaaacgccag tatgataagt cgtcctggaa ctatcagttc gatgaaaacg gctatgcaaa
     1741 acgcgatgaa acactgactc atccgcgctg tgtgtggaac ctgctgaaag cgcacgtttc
     1801 ccgctacacg ccggacgtcg ttgaaaacat ctgcggtacg ccaaaagccg acttcctgaa
     1861 agtgtgtgaa gtgctggcct ccaccagcgc accggatcgc acaaccacct tcctgtacgc
     1921 gctgggctgg acgcagcaca ccgtgggtgc gcagaacatc cgtactatgg cgatgatcca
     1981 gttgctgctc ggtaacatgg gtatggccgg tggcggcgtg aacgcattgc gtggtcactc
     2041 caacattcag gggctgactg acttaggtct gctctctacc agcctgccag gttatctgac
     2101 gcttccgtca gaaaaacagg ttgatttgca gtcgtatctg gaagcgaaca cgccgaaagc
     2161 gacgctggct ggtcaggtga actactggag caactatccg aagttcttcg ttagcctgat
     2221 gaaatctttc tatggcgatg ccgcgcagaa agagaacaac tggggctatg actggctgcc
     2281 gaagtgggac cagacctacg acgtcatcaa gtatttcaac atgatggacg aaggcaaagt
     2341 caccggttat ttctgccagg gctttaaccc ggttgcgtcc ttcccggaca aaaacaaagt
     2401 ggtgagctgc ctgagcaagc tgaagtacat ggtggttatc gatccgctgg tgactgaaac
     2461 ctctaccttc tggcagaacc acggcgagtc gaacgatgtc gatccggcgt ctattcagac
     2521 tgaagtattc cgtctgcctt cgacctgctt tgccgaagaa gatggttcta tcgctaactc
     2581 cggtcgctgg ttgcagtggc actggaaagg tcaggacgcg ccgagcgaag cgcgtaacga
     2641 cggcgaaatt ctggcgggta tctaccatca tctgcgcgag ctgtaccagg ccgaaggtgg
     2701 taaaggcgta gaaccgctga tgaagatgag ctggaactac aagcagccgc acgaaccgca
     2761 atctgacgaa gtggctaaag agaacaacgg ctacgcgctg gaagatctct atgacgctaa
     2821 tggcgtgctt attgcgaaga aaggtcagtt gctgagtagc tttgcgcatc tgcgtgatga
     2881 cggtacaacc gcatcttctt gctggatcta caccggtagc tggacagagc agggcaacca
     2941 gatggctaac cgcgataact ccgacccgtc cggtctgggg aatacgctgg gatgggcctg
     3001 ggcgtggccg ctcaaccgtc gcgtgctgta caaccgtgct tcggcggata tcaacggtaa
     3061 accgtgggat ccgaaacgga tgctgatcca gtggaacggc agcaagtgga cgggtaacga
     3121 tattcctgac ttcggcaatg ccgcaccggg tacgccaacc gggccgttta tcatgcagcc
     3181 ggaagggatg ggacgcctgt ttgccatcaa caaaatggcg gaaggtccgt tcccggaaca
     3241 ctacgagccg attgaaacgc cgctgggcac taacccgctg catccgaacg tggtgtctaa
     3301 cccggttgtt cgtctgtatg aacaagacgt gctgcggatg ggtaaaaaag agcagttccc
     3361 gtatgtgggt acgacctatc gtctgaccga gcacttccac acctggacca agcacgcatt
     3421 gctcaacgca attgctcagc cggaacagtt tgtggaaatc agcgaaacgc tggcggcggc
     3481 gaaaggcatt aataatggcg atcgtgtcac tgtctccagc aagcgtggct ttatccgcgc
     3541 ggtggctgtg gtaacgcgtc gtctgaaacc gctgaatgta aatggtcagc aggttgaaac
     3601 ggtgggtatt ccaatccact ggggctttga gggtgtcgcg cgtaaaggtt atatcgctaa
     3661 cactctgacg ccgaatgtcg gtgatgcaaa ctcgcaaacg ccggaatata aagcgttctt
     3721 agtcaacatc gagaaggcgt aagggggcga acagatggct atggaaacgc aggacattat
     3781 caaaaggtcc gcaactaact ccatcacgcc gccttctcag gtgcgtgatt acaaagcaga
     3841 agtcgcaaaa cttatcgacg tttccacctg tatcggctgt aaagcctgtc aggtggcgtg
     3901 ttcggagtgg aacgacatcc gtgatgacgt ggggcactgc gtcggggttt acgataaccc
     3961 cgccgatctg agcgccaagt cctggacggt gatgcgcttt agcgaaaccg aacagaacgg
     4021 caagctggag tggctgatcc gtaaagacgg ctgtatgcac tgtgaagatc ccggctgcct
     4081 gaaggcgtgc ccgtctgctg gtgcaatcat tcagtacgct aacgggattg tcgatttcca
     4141 gtcggaaaac tgcatcggct gtggttactg cattgccggg tgtccgttta atattccgcg
     4201 cctcaacaaa gaggataacc gggtatataa atgcacgctc tgcgtcgatc gcgtcagcgt
     4261 cggccaggaa ccggcttgtg tgaaaacctg tccgaccggg gctatccact tcggcaccaa
     4321 gaaggagatg ctggagctgg cggaacagcg cgtggcgaaa ctgaaagcgc gtggttacga
     4381 acatgctggc gtctacaacc cggatggggt cggtggtacg cacgttatgt acgtgctgca
     4441 tcacgccgat cagccggagc tgtatcacgg tctgccgaaa gatccgaaga tcgacacctc
     4501 ggtaagcctg tggaaaggcg cgttgaaacc gctggcagcg gctggcttta ttgccacttt
     4561 tgccgggttg attttccact acatcggtat tggcccgaat aaggaagtgg acgatgacga
     4621 ggaggatcat catgagtaag tcgaaaatga ttgtgcgcac caaatttatt gatcgcgcct
     4681 gtcactggac cgtggtgatt tgcttcttcc tggtggcgct gtccgggatt tcgttcttct
     4741 tcccgacgct gcaatggctg acgcaaacct tcggtacgcc gcagatggga cgcattttgc
     4801 acccgttctt cggcattgcg attttcgtcg cgctgatgtt tatgtttgtg cgttttgtgc
     4861 atcacaacat cccggataag aaagatattc cgtggctatt gaacattgtc gaagtattaa
     4921 aaggcaatga gcacaaagtg gcggatgttg gtaagtacaa cgccgggcaa aagatgatgt
     4981 tctggtcgat catgagcatg attttcgtgc tgttggtgac cggggtgatt atctggcgtc
     5041 cgtactttgc gcagtacttc ccgatgcagg ttgttcgcta cagcctgctg atccacgcgg
     5101 ctgccggtat catcctgatc cacgccatcc tgatccatat gtatatggca ttctgggtga
     5161 aaggatcgat taaagggatg atcgaaggga aggtaagccg tcgctgggcg aagaaacacc
     5221 atccgcgctg gtatcgtgaa atcgagaagg cagaagcgaa aaaagagagt gaagaaggga
     5281 tataatctct tttgaacttt aagctgaaaa tggcgcttta agaagcgcca tttttttatt
     5341 gcgtaaccag acggcgcagt cgcgacacat ccaccgtttt ttcagcctct gccagactcc
     5401 aggcgttttg cagattcagc cacatttgcg gcgaactgcc gatcaccacg gaaagtttaa
     5461 ttgccatttc tggcgtcaaa gctgcttttc cggtcagcaa tcggcttgcc gttgagggcg
     5521 caatttccat tgctctggca aactcgcgca ggctgacatt aagttcgtcc agtgattcct
     5581 gaataatgtc ccccgggcgg ggatgattgg ccattttcat tagtgtcttt actctcagta
     5641 gcgttccttc tctgggaaca ctatcattat tgttccttcc tacgcaacaa taatccattt
     5701 agccatttca tgttggagag tgtgcgatgc tgcgacccga acatgggagt cgcagcaaag
     5761 acctcttagt gacggaaatc aatcaccata cggccacgga ttttgccttc ttccatctcg
     5821 gtaaagatgg tgttgatgtc cgctaacgga cgcagggcga ctttcggcac aactttgcct
     5881 tcggcggcaa actggaaggc ttcggttaga tcctggcgcg tgccgaccag cgaaccgacc
     5941 acttcaatgc catccagcac aagacgtggg atatccaggc tcatagactc cggcggcaga
     6001 ccgacagcca caacacgacc gcctgcacgg acagcatcaa ctgccgagtt aaacgcagct
     6061 ttagctactg ctgttaccac cgcagcgtga gcgccaccgg ttttctcctg cacaatttag
     6121 gcggcgtctt cggtgcgtga gttaatcgct aaatctgcac ccatttcggt tgccagtttt
     6181 aactgctcat cattgacatc aatggcgatc actttggcgt taaagacatt cttcgcgtat
     6241 tgcagggcga ggttacccag accgccaaga ccgtagatag caatccactg accgggacga
     6301 atttttgaca gtttaacggc tttgtaggtg gtgacccccg cacaggtaat gctgctggcc
     6361 gccgccgagt ccagaccatc tggcactttt accgcgtaat cggcgaccac gatgcactct
     6421 tccgccatca acgctgtatc cggcattttt aactgaacgg cagagcgttt cgttaccact
     6481 gttacagtat tcgcaatgac cgcatccttc gtaaaaccac gccacgctgg cacgatcgcc
     6541 tagttttaat gaggtgacac ctgggccaac ttctgccacc acaccgatgc cttcatggcc
     6601 cagaattacc ccagttttgt caccaaaata gccattctta acatgaagat cggtatgaca
     6661 tacaccacaa cactccattt tcagcagggc ttcgccatgt ttcagtgagc gcagtgtttt
     6721 atccgtaacg tcaacatgat gatccttcgt aacaactgca gccttcatag ttcctccttt
     6781 tcggatgatg ttctgcatag caggtgaggc aaatgagatt tattcgccac tacccagtat
     6841 ggatgagatc tgaaaaaggg agagggaaat agcccggtag ccttcactac cgggcgcagg
     6901 cttagatgga ggtacggcgg tagtcgcggt attcggcttg ccagaaatta tcgtcaatgg
     6961 cttgttgcaa agcttcagca gacgttttca ccgccacgcc ttgctgctgc gccattttgc
     7021 caaccgcaaa cgcaattgcg cgggagactt tctgaatatc tttcagttcc ggtagtacca
     7081 gaccttcgcc gttcagcacc agcggcgaat actgagcaag cgtttcactt gctgacatca
     7141 gcatctcatc ggtgatacgt gacgcgccgg aagcaataac acccagcccg atgccaggga
     7201 aaataaaggc gttgttacac tgggcgatag ggtagatttt atctttccat accactggat
     7261 taaacgggct gccagtggcg accagcgcgt taccttcggt ccaggcgata atgtcctgcg
     7321 gtgtggcttc cacgcgtgac gtcgggttag acagcggcat cacgatcgga cgcggacagt
     7381 gtttatgcat ctcacggatg atctcttccg taaacagccc ggtctgtcct gagacgccaa
     7441 tcagaatatc tggttttaca ttgcgcacca catccagcag tgacagcaca tcgctgtcgg
     7501 tatcccagtc actgaggttt tcgcgtttct gcaccagttt ggtctggaaa ggcagcaggt
     7561 tcggcatctt gtccgtcagc aggccaaagc gatcgaccat aaagactttc tgccgcgccg
     7621 cttcctcgct taatccttcg cgctgggtct gggcgatgat catttcggca atgccgcatc
     7681 ccgctgaacc tgcaccaagg aagacgattt ttttctcgct taactgacca cctgccgctc
     7741 ggcttgctgc gatcagtgtg ccgactgtta ccgccgcagt gccctgaatg tcatcgttaa
     7801 aagaacaaat ttcattgcga tagcggttaa gtaacggcat cgcatttttt tgagcaaagt
     7861 cttcaaactg caacagcacg tctggccagc gttgtttcac agcttggata aattcatcaa
     7921 cgaattcata gtattcgtcg tcaatgatac gcggattacg ccagcccata tacagcggat
     7981 cgttaagcag ctgttggttg ttcgttccga catccagcac caccggaagg gtatacgccg
     8041 ggctgatgcc gccacaggcg gtatagagcg acagtttacc gatcggaatg cccatcccgc
     8101 cgatgccctg gtcaccaagc cccagaatac gttcaccgtc agtcaccaca atcactttga
     8161 tattatggtt cggtacgttt tgcagaatat cgtccatatt gtggcggttc tggtaagaaa
     8221 taaacacgcc gcgtgaacgg cggtagatct cagaaaaacg ctcacaggct gcgccgacgg
     8281 ttggggtata aataacaggc atcatctcat caagatgatt gtttaccaga cggtagaaga
     8341 gggtttcgtt ggtgtcctgg atgttacgca ggtagatgtg tttgtcgatt tcggttttga
     8401 atccttgata ctggatccat gctcgttccg cttgttcttc gatggtttcg accacttccg
     8461 gcagtaaccc cagcaggttg aagttacggc gttcttccat gctgaaggca ctgcctttat
     8521 tcaacaacgg aaattccagc agtacagggc cagcgtaagg gatataaagc gaacgctgtt
     8581 tttttgtttt tggttccatg tcactcactc ttttttgaat atccatccct ggcacgcttt
     8641 tatcgtcttt gctttaccgc cagggcgtcg gccccaagta taaagcagat aaaaacaaaa
     8701 acaccattgc gcaggcaatg gtgtttaatc gtcattgagg actgatggtt atgaattact
     8761 tttcagcggg gcgttttctg ccggttgggt tatttaccac gctggatttg tcaccttcgg
     8821 taactatttt gcgctggtta gaaattttat ggtccagtcc aagaatatga cgtgcctgac
     8881 ggttcgattt cattttaact cctcaatcct gttgctagtt ttaaggacaa catcgccgta
     8941 gcgaagaaac acgtgctaaa cccctaaatt aggttgccga tcaagcatag caccttaaag
     9001 cgtagggtgc tggccactga ccacataatt gatcgtttgc tggtagatat cactgaggat
     9061 gtcgttatca gaagcttcca cccatttggt cagctccatg agaatgtcat cttcagtgac
     9121 aacaccgtgc tctgcccgaa ggccttgctc aatggcatta accagagcgg gttctgctgt
     9181 tgaattttct gcctgataat aagtaaacat agtgattctc cgtgtctgtg tatttatggt
     9241 gtctgctacg gatcgcagat ttataaagca cattcagcat ggcaaatatt tgccgcttcg
     9301 ttgttaagat tagtcctggt tgatgatttt tatattttaa cctcatgata ttgataggta
     9361 ttattattgt ggtgagttga ttaatattaa tgcaatatct cttgggttat atattcccgg
     9421 ttatctattg tggaaattta atttaagtgc agaagtaata tttctgccgg atttttattc
     9481 ggaatatcct gcttatcctc gtgctgtttc tcacgtagtc tataatttcc tttttaagcc
     9541 cacatgagag caacaatgac aatccataag aaaggtcagg cacactggga aggcgatatc
     9601 aaacgcggga agggaacagt atccaccgag agtggcgtgc tgaaccaaca gccgtatgga
     9661 tttaacacgc gttttgaagg cgaaaaagga actaaccctg aagaactgat tggcgcagcg
     9721 catgccgcat gtttctcaat ggcgctttca ttcatgctgg gggaagcggg atttacgcca
     9781 acatcgattg ataccatcgc cgatgtgtcg ctggataaag tggatgccgg ttttgcgatt
     9841 acgaaaatcg cactgaagag tgaagttgcg gtgccgggta ttgatgcctc tacctttgac
     9901 ggcatcatcc agaaagcaaa agcaggatgc ccggtctctc aggtactgaa agcggaaatt
     9961 acgctggatt accagttgaa atcgtaaagc attgccggat gacgtgtcag gcgcgtgaat
    10021 gcctgatgcg ttgttagcat ctctacagcg cccgccagca ccggagctca cgtccgtcct
    10081 cccttattgc taatgattgc cggacttcac atccgctggt tgcaaggggg caacgttcgt
    10141 agaaaaaaca gccttgcggc aacgtgcggt ttcccggcag atccgtttta cgtaatgccc
    10201 attcttcctc cagcggttta tcaatggcgg ggagggaatc cagcaataat cgggtgtatg
    10261 gatgtgccgg agccgttagc acctgttgcg cgtcgcccag ttctacaatc tgcccgagat
    10321 acatcaccgc cacccgatcg ctcatatgac gtatcaccga gacattgtgt gaaatcagca
    10381 cataggtcag cccgtgattt tcctgtagcg ttaccagtaa attgaggatc tgcgcctgca
    10441 cggagatatc cagcgcagag gttggctcat caagcacaat cacgtcaggc tgcgaagaga
    10501 gtgctctggc aatggcgata cgttgccgct gcccgccgga gaacgcatga ggcaggcggt
    10561 cgagatactc cggacgaata cccacctgca cagccagctc ctctgccaac gctcgccgct
    10621 gttgttcact actatgctta gctatccaga gcggttctgt gatgatgcgc cacaccggta
    10681 agcgcggatt gagcgaagag agcgggtcct gaaacaccat ctgcataatg cgttgtgagc
    10741 cagaacggat gtactgcccg tggctcggtt gcagcatacc cattaaaagc tgtgcgaggg
    10801 tgcttttgcc gcagcctgac tcgccgacga tccctaaggt ttcaccacgg cggatctgta
    10861 aatcaatacc attaatcgca tgaacatgtt ccgtagtttt accaagccag tttttacggg
    10921 ccgggaaatt gatatggacg ccgcgtaacg ttaataacgt gtcagacact tatgacctcc
    10981 tgctgcggat accaacaggc gcagcgctgg ttgttgtcac cacacgctgt cagcgccggg
    11041 acgttttcac actgtgcacc tgccgcatag caacgatcgc gaaaagcgca gccgtcaggc
    11101 aaatgggtga ggtttggtac cgtccctgga atggcgggta atagctggcg tggtactcca
    11161 tgttctggtg cacattggag caaaccaatg gtatacggat gccggggatg atggataacg
    11221 tctgccctca cgccgctttc aattacgctt ccggcataca tcacgtaaac gctatcgcac
    11281 agttgcgaca ccacggccat atcatggctg atgaacagaa ccgcagttcc actggcgcgg
    11341 gctttatgtt taagcaaacg cagtacctgc aactgcaccg tgacgtccag cgccgtagtc
    11401 ggttcgtcgg caataatcaa ttgcggctcg caggagaatg ccagcgcaat cattacccgc
    11461 tggcgcatac cacctgaaag ctcaaacgga tagcgcgaca taacttccac ggcatccggg
    11521 atttgcatct cttccagcag gacaatcgct ttagctctgg cttcccgacg acttattggt
    11581 tgatgatggc ggatcacgtc catcatctga agacctattc gacgtgtcgg attgagggcg
    11641 gtcatcggtt cctgaaagat catcgccact cgtgcgccgc gccactgacg aagctgtttt
    11701 tcccgagcgt taagaacatc gtctcccagc agtgaaatct gcccccgatg tacgcaataa
    11761 ctgcccgtcg gtagcagacg cataatcagc attgcggtga ctgatttacc tgagccggat
    11821 tctcccacca gaccgacaat ttcaccgcgg ttaatctgca aggacacatt gttgagcgcg
    11881 tgaacatcac cgttaaaacc ggggaaactc aaatgcagct gttgaatgtc cagaacgggc
    11941 tgggtcatga ctgctttcct cctgctttcg ggtcaagcag atcgcgaata ccatcaccaa
    12001 agagattaaa cccaacggcg gtaagcaaaa tcgctgcccc cggaaatgcg caataccacc
    12061 actgatcgag tacatagttg cgaccattcg ctaccatcgc gccccattca gcactcggtt
    12121 gttgagcacc caggccaata aatcccaacg tggcggccat taaaatcgcg ctaccgatat
    12181 ccagcgatgc ctgcacgatc agcggcggca gggagttacg taaaatatgc cagctgatca
    12241 gatgccaacg cgacgcacca aaggttttcg ccgcctgaac ataggtatac tggcgtacaa
    12301 ctaatgcttg cccccgcgcc aggcgcacat aaaagggaat tcgcacaata gcaatcgcca
    12361 gcatggcgtt aaataaactc ggcccgagag cggcagccag tgccattgtc agtaccaacg
    12421 aaggaatcga cagcataatg tccatgatgc gcatgatgat ggcgtctgcg cgtccgccaa
    12481 gcacaccgag tagcgaacca atcatacccg caatggcaac cacgactaat ccggcgagaa
    12541 ttgattgctg actgccgacc agtacgcggc tgaacagatc gcgtcccact tcatcggtgc
    12601 caaaccagtg cgccgcagaa ggcggcaaaa ggcgggcggt taaatcaatg gcgttgggat
    12661 catgcgtcgc aagccacggt gaaaaaaaca tcatcaatag cattaataca atgatgactg
    12721 cgccggtcac ggtgagcgga ctgcctttca gcatccatac cagttttgca ccgttaaatc
    12781 gcgtttgttt ttgtgggcgt acggcggacg tttcctcgct tagcatcatt caccacctcc
    12841 acgtccgata cgcggatcaa tccacaaata gagcaaatcc accaccaggt tgaccagcac
    12901 ataagcaaat gaaaccacga cggcaaagcc catcactgcc gggaagtcga gcgcctgtat
    12961 tgatgttact acccatgcac ccattccggg ccaggcaaaa acggtttcgg tgagcactgc
    13021 gccatacaac aaatcgccca gcgccagacc caatacggta atcgatggga tcaacgcatt
    13081 gggtagcgca taacataaaa cgatatacca gccgggcaag ccgctggccc gggcggtacg
    13141 aatgtagtct tcactcaatt gttccagcat cgctggcgcg gtcacccgcc agtaaccgcg
    13201 ccggatcgcc agggatcaga tgcgagataa taaacgtaat cacgcagacg cccgccacca
    13261 cgagcaccag cccccagcag cgttggcgta aaatactcca gaaggtcacg ttatttactc
    13321 atggtattga tattgaagac ctgttccagc atgggattga acacaaagcc tttcacctct
    13381 ttgttcatcg ccagttggta gtttttctgg aacaggtaca cataagcagc gtcatcaatg
    13441 acgattttct gtgcctgctg gtagtcccgg gtacgctgcg tctggtcggt ggtcgcaagc
    13501 gcattgcgca gtaacttatc gacctcactg ttttcataga acgagcggtt acccggcaga
    13561 ccttttttgt ctgactcaaa ccagtaattc ataaacatat acgggtcggc aaaatctgga
    13621 ctccagttgc caatcgcaat gtcgtaatca cctttaccca ctctgtcgcg catggtggcg
    13681 ttcgccagtt tttccagctt cacattgatg tccagcttgt tgagactgga ttgtgtcgcc
    13741 agagcaatag gctcccagtt cggatcctta tcggagtaga gaaacgtcag gctggtgggt
    13801 ttgctcgtca ctttatccca ttcggctttg gctttcgttt cgtcatggtt gtattgcatt
    13861 gccgtcgcat cgtagcccca catgccttcc ggaatcgggc cgcgcatctg ttttccgtta
    13921 ccactcagaa tgccgttaac catgccctga taatcggtag accaggaaat ggcccgacgc
    13981 agatccgcct gattaagagg cgctttgctg ttattcagat acaggtaggt gacgcgcagt
    14041 gacggatact ctgccacatt gactttgttt tcctgcttca gggcgttgag ttgatccacc
    14101 ggcagcgcat cggcaatgtc aatatcacca cgggagagct gcaggcgacg ggaggcactt
    14161 tcaccaataa tttttaccga tactcgctta aagttcggtt tattgccagg gtaatgcgga
    14221 tttggcacca gaactaattg ctgacctttt tgccagcttt tcagcataaa tggtccggaa
    14281 ccggcggtat tttgcgcgag gaagccgcgg gcatcatccg ctgcatgttc ctttaacacc
    14341 gccggattga taatggatgc accgtcattc gccagcgtgt agaggaacgg tgcgaatggc
    14401 tggctaaggg taaacttcac cgtatgttcg tcgggagcat caatctttaa atctttggga
    14461 aatgcttctg ctggcccctg gccgattttt agtagccgct caaaagagag ttttactgct
    14521 tcggcagtga ccggtgtgcc atcggcaaat ttagcattgt ccttcagggt gaacgtccac
    14581 tctttttgat cgtcagacgc tttccagcta cttgccagat cgccttcaac gtcggttgag
    14641 cctttatcac cgtccgtttt gtactgaacc agccgctgat aagacgggta ggtcaccgtc
    14701 cagtcgttat tatctattgt taccgccggg gcgagggttt gtggatcggc ggccttacca
    14761 atcaccagca tatctttcgg tacggcggcg tgcgcaaccg ggaaagttgt ggcaaggacg
    14821 agcgcgagca atgtaggacg aaacggtatc gatctcttca tgacagtttc ctgattaact
    14881 gacgtgctgt gtgccagggg atataaaaca ggtgaattga tcagcgagca gtgggtaact
    14941 cgctgcctgg ggtaattcga agtgccacca ttcgctggag ataccgacaa aaccgccacc
    15001 agtcataatc gcattcagca acagccgatt gcgctgagcg gcgggcggga cggaagggtg
    15061 ataggcatgg gagcgctcgt gcatttcatc gaaccctgcg cccatattga ggatgttccc
    15121 gtgctcatca cgaagcgtca ggtcgatcgc cgtgccacgg ctgtgattag aaccgaccgt
    15181 cacatcaaca acatattgcg ggtctgggca ggcttgccac aacatcgcct gtgcttgttg
    15241 tgggcgatac gcatcgtaaa tcaccagttg taagcctgac agctgggcga tactgatact
    15301 tttcgccagc gcggtaatcg catccttgtg tagcagacaa cgcgcttgct gataaatagc
    15361 tttacctgtg atgttatcag cgcaggcgta tttcaattcg atctccagat cagggaagat
    15421 tacggctaaa tcaaccagtt cggtggtatc caacataaac ggttcctgta taagacaaaa
    15481 attgctgcgc tttccgctta tgcagatctc attccatgcc gggataagcg ccagaatgct
    15541 ggcttaaagt tatatttttt aacttttgat caacatttgt gcagcgtagt gcagttttgg
    15601 tgcaagaggg gaagttaagg aaggaatctc ccggaatcgt agctgaaatc acagtattta
    15661 agtgacggtg tcacgttaaa tgaaaacccg cgagtgcggg cgagaggaat ttgtcagatt
    15721 ttcagcggta acacgctgct catccagcct ggaatttctt cggcgggtag ggggcgggaa
    15781 aagaaatatc cctgaataac gcgacagtgg atcttgcgta gcatctcaaa ttgctctttg
    15841 gtttcgacgc cttccgccac gacggttaaa ttgaggcttt gcccaatgct ggtaatggct
    15901 tcaagtaagg caaggatgcg tttttcggtc agacaacgat cgacaaaact tttgtcaatt
    15961 ttgatttccg ttaccggaag actgactaag cgggataatc cggaaaagcc cgtaccaaaa
    16021 tcatctaccg ataagcccac gcccatatca cgcaggatct gaatgcgctt aaagatttcg
    16081 gtatcgtgtt ccatcatcat gctttccgtg atttctaccg tcagctggtg gccgtcaata
    16141 ccccaggcgt gcattgcatc agacacctga ttaggcagtt gattactgcg aaagtgcagt
    16201 gccgacaagt taacggaaag cgccgggata tgaatattct ggctacgcca ttctgctaac
    16261 tgacggcaag cttccgcgat gacccagcgc ccaatatttt cgatttcacc aatctcttct
    16321 gcgagaggaa taaaccgtga agggggcaca tgaccatgct ggggatcgtg ccagcgcgca
    16381 agggcttcga tgccgtacag ttcacccgtt tctgcgaaga tttgcggctg gtaaacaagt
    16441 ttcagttggt tattgctaat cgcttctttc agcgctgcgc ctaaaaccaa acgctctttt
    16501 accatttcgt tcatcgccgg gctgaagaac tgccagccgt taccgccatt cttgcgaata
    16561 taatctattg cattgtgagc agtggagagt aggtaatcgc ggtttttacc cacgtcgtag
    16621 ctgatgccaa tactcaaggt aagcgggaat ggtttatcgt caatcattat cggcttgctg
    16681 accacattcc gtagctcatc ggcgatctgg gtaatgttac tgacgtcgtt ttccaggctc
    16741 acgaggacaa actgcgtacc ttcgatacga cagagatact gatccggttt gagttttcca
    16801 cgaaagcgat tgaccacttc cagcaatgcc tgatcggccc acgcatagcc aaggctatca
    16861 atcacatcct gaatatggtc aacaccgatg agatacacca ccggagagac ggctttgtcg
    16921 accaggtcat cgaggtaatt gtgcaggtta ttgcgatttg gcagaccggt catcggatca
    16981 aattggatga gttgttcaat atgctggcgg cttttttcct gttccagcgc cagcgcggcc
    17041 atatgctgac tgatatctgc cacgcgttcg ataaaggcgc tggtttctgc tcctgacgag
    17101 gttttaattt gcaggatccc cgcaggcgcg ccatcacgct gacgaatggt cgctgaccag
    17161 ctttgcgcat tttgaacttc tgcaccgtgc gaagatgacg cccagtgtat cggcatcccg
    17221 ttgcgcagtg cgaacagcga aacatgcgat tcgttgagaa cagattcgat gttacgacaa
    17281 atgatttccc ccatttcatg aaatggcggg ctgctgcaca tggcggcgag aatattgcct
    17341 tcaagctggc ggatttgccg ttcttcggtg atatccgaga aagtcattac caggttctgc
    17401 agatgcgcga gcacgtcata aaccgggctg atagaggctt taatccagat tttttcaccg
    17461 gtgcgcgtca acagcagaaa ttcgtcctga tcgcgggcgg ttttccatag caactgttgt
    17521 aaacgaatgc ggttatcggc agggaattca ggaatgttca ggagtgtatc gggctgcata
    17581 ccgcaggctt cgctaatgca gtaaccaaac atttcggtaa atgcgcgatt gcactgcaca
    17641 atatggcgtt ccggatcgag gacaatcacc ggtcggtcga gatggtcaac ggcaataatc
    17701 aattgtcggg tctgttcttt ttgcgccatt tctacgctgg catcccgtac cagcgccagg
    17761 taataaactt tcccctcggc gctcactttc gatagcgcaa aacgggtcca gattttactg
    17821 ccgtcttttt tctccagctg cagctcccga ctcatcccct cgacgcgcgc tttaccacct
    17881 tcacggttat gacgaatgta ttcaggatgc gcaggacgca aatcccgcgg aatcagcata
    17941 tcaatgttat tgccaatgac ttcttcacgt ttgtaccccc agagcttctc tgcggcgggg
    18001 ttgaaaaaca tcacttcatc attttcgtta attaacaccg cgcccatcat attttgttca
    18061 agggcgggga aaaaaatgcc atcggcggca ttttccgcat cggttagctt catgattacc
    18121 tctgcatcct ggcgcatcta aagactggct ttccagagtt caacacggtt tctacctcgt
    18181 cttttggcga tatacagagc ttcatcggct atttgaatga ggcgctcata gtcaggatga
    18241 ccattaaaca tggcggcacc gatggaaagt gagagggcaa tatcctcgcc gtttgcggct
    18301 ttcagtttgg ttttctccgc ccgactgcga atacgttctg cggtacgtaa cgtttcgttt
    18361 tcagaagctt cagtcaaaac aatgataaat tcatcgcccc cgtagcgaaa aacataatca
    18421 ctactgcgga cgttgtcata aaaggcctga gagactttac gcagaatttc atcgccagtg
    18481 ttatggcccc acgtatcgtt gatctctttg aatttatcaa cgtcaataat cagcactgac
    18541 agcggtgtac cggtcaggtt ggcatgggca atttcgcgtt tgaagatagt cggcaggaag
    18601 cggcggttaa gtaatttcgt cagtacatcc ataccgactt cgtggcgcga tacttcttca
    18661 aacaattcac gcagcaaggt aataatttgc gatacagtat ttcttatctg taataaaaat
    18721 ttcacccgca gacttctgtt attcaaattc ctggtgttac gcatggtttg attgaatata
    18781 ccgtcgaaat cctgaatcag acgggagata tgcctacttc ggcaatgcca ctaaaataat
    18841 gtcgaccttt atggttaaac cacaggccaa aatcagcctg gcttaaaggc aaactactgc
    18901 ctaaatcaga atccagcagg attttataga taatatctat ttcccatgaa agtattgagg
    18961 ctatttgccg ttctttttct tcttcggcgt tttctagtaa cgagaagata cgatagtttt
    19021 catcttcctt tgaggcacta ctgtcactaa aggtaaacgc gcgggtcatc acttccatag
    19081 cgatatcaat actgttaatc gagaaatggt agacctgaag tttttctgcg gcagaataat
    19141 ccgaagagaa gattaccgga tagaggattt ttttcagcac ccgaaacccc atctcgacaa
    19201 tttctaccgg aattcctatg cgggcatgca cttccgcgac ggtatgctgg atttgtatta
    19261 gcctttcgac atcgtcaacc tgggcagaaa gcacgttaat aatccagcgt tccatcgcac
    19321 ttttcaactg ccgctcaact tgttcattac tcaagaattc ttcggcatgc gggtcgatgc
    19381 ggacaattcg ataaaactcg atactcagat aatgagcatg cgcaacggca atttccgcgg
    19441 ctttagcacg aatgagtgga tctgcctgtt cgacaagtcc ggtccactca tctttcattc
    19501 ttttaaaata catctccata attcacaccc ttataaggct gggaaatcag acggaatcaa
    19561 aacgcaacgt gcgagatcga ctaactgcac catattctcc tgaaatatga agatatactg
    19621 aaaagaaata agcgacttag gacagtttca atctacgcta ctgttcttca gaagagtata
    19681 gcccatcgta attatttttc ggtgacagcg aatatcgtat ggtttttcat attcatacat
    19741 ttttattagg gatttatagc tgtttaacta agtgtggtta attgcgtggt taatttgact
    19801 tatgtaagca tgattactag tgggatattt cacaaggtgt aacaagccgg tgggtaaagc
    19861 accggcttgt tacaaagtaa gcatgggagt ttaactgccc caacgacttt gcagatagct
    19921 gaccgcttgt tgagtctgcg gtttattcag atagtcctca cggaacaaga tggtgccgct
    19981 aatttctggt accgcatcgt taagatcgag ctgctttttc agttccggta cgccgccgtt
    20041 aatcatccag tctggctcta tctttgaagg ttcacccact ttatagaagg cgataccgat
    20101 atacaggcgg gtcctggtcg gtttaacgac atccgcccac cattttgcca acacgtcata
    20161 acgcgcggca ctccgtgaga acggccagta aatttgggga gcaatgtaat ccagcaatcc
    20221 ttgttccacc catcgacggg tgtcagcgta ggattcgtca taggctgccg cgcctcgggt
    20281 atcggaaccg agcggatcgt gtgatcggtt acgccacacg cctgccgggc taacgccaaa
    20341 ttcgattccc ggcttaatgc ttttaatggt gtgcgatact tttgtaatta actgctgagt
    20401 attgttgcgc cgccagtctg cttttgacgc aaatgcgcct ccgtatttac ggtacgtttc
    20461 gttatcattt agccgtgaac ccggtgactc cgtatagaaa tagtcgtcaa actgcacgcc
    20521 atctaccgga tagcgggaaa ccacttcggc gactattgat gtgatccagt cctgaacctc
    20581 agggatgccc gggtcgagga caaagcgatc gccagacgtt ctgatccagt cacggtgttg
    20641 cacatagacg ctcgccggtt gttgagacag agtgctattc agttccctga tagtaccggg
    20701 cttcgtatta accgatacgc gataggggtt aaaccaggcg tgtactttca tcccacgctt
    20761 gtgggcttcg tcgagcataa attgcagcgg atcgtaaccc ggattttcac caatcttacc
    20821 ggtcataaga tcggaccacg gcaaaatttt cgatggccac agggcggtac cgtccggctt
    20881 gacctggaaa aagaccgtgt ttataccgag acgttgcaga tgatccagtt tgtcgatcat
    20941 cgcctgttgt tgtacacggg cccggctggt ggggttacta atgttaaccg aggaaaccgg
    21001 tggccagtcg aggcgagaca ccgtggccag ccagatgcca cgcatcggtt gtgacgattg
    21061 ttgcgtcgtg gctggtggct ttgaacctgc tggtggtgtc accatggact ctggaggcgt
    21121 gcttttacaa ctacacagta aaagtgccag tgcaaccagt atcgctggtc ttctaatcgt
    21181 taatttcttg tttcgggagc agatatccat atgtgctggt ttccggtaaa cagatgtgcg
    21241 ctcattctcg tacttatccc ggttaagtca atacgacagc aagcacgaaa aagggagcga
    21301 tgaattatcg ctcccttgtc ttataaccat tcagacatgg ttagtgtttc ttgtcattca
    21361 tcacaatata gtgtggtgaa cgtgcacgcg ggtgcaggaa gaagtgacct tttggtgcgt
    21421 tctgactgtt gattggctcc agagtgacgc cggtattcgc tttgccttta cgatcatgaa
    21481 cagcatagag aataaagggc agggcaagta ccaccaggaa actaacgacc agtaattcaa
    21541 catacatatc ggtagagtca ccctggatgt tatccggcgg caggaaggaa acaataaacg
    21601 ccataattga agtcagcaga ccgacaattg ccacgaccag tttcacccct ttaccaccag
    21661 ggatattaaa tgtgcgtttt aagtcaggat gtttaagaac caacacaatg tagccaataa
    21721 acagcatgaa ataagcacac agataaatca ccaccgtcag cgccagtgcg atcaggaagg
    21781 acatgttgtt accgccaccg gtattggtga ggatgatcaa cgcgatagaa gtaatcacca
    21841 gctgcgaaat gaccagcgtt accggtacgc catttttgtt cattttagcg aatgccgctg
    21901 gcagcaggtt tttctgcgct gtgacataca tcccgcgaga aggaccaaca atccaggagg
    21961 cgatttccgc cagaacaccc agcaacagca gtgcggagat cacgcgaacc gtccactcaa
    22021 tttccggtgc cacatgggac atcagaacgg taaaggtttg cattacccct gcggagaggt
    22081 tgatttcatt acccggaatg accatcgcaa tagataaacc gccaacagag cttaagcaga
    22141 ttgccgccac catcagcagt aacatagcca gtggatagtc gcgcccgggg ttgctcattt
    22201 cattgacgtg agttgcggaa gcttctacgc ccatataact caaaatgaag gcaacaaata
    22261 caaccagtgt gcccacttta gagaagtcag ggaagaaggt cttcgaatcc atttcgatag
    22321 caacgggggc accggagtgc agataaatag ccgctaatgc gatcaaaata aatgcaggta
    22381 acaggatacc ggcgaagaag ccaactttag caattcgcgc cgtgtatttc gtgccaccaa
    22441 actgcgttaa tgccagcgcc caaagaatga tgagtgctgc aatagttttg gtaatggggt
    22501 cttcattcag cgctggccat ttcaggatgt aggagagtgc ccctaacacg aaatagagca
    22561 tcggaataaa accaatggcg atttgcagat agccaaatga gatcgctgca aatccccatc
    22621 tcggccccag agtatttgat acccaggcga agacaccacc ttcttcccag ccgtcgacgg
    22681 tggccatttc cgcagcacaa agtcccacgg gaataaacca taaaatcccg cctaatagca
    22741 ggaagaagac taatgaaaag cccgatgttg cgaaggtagg gtattcataa acagccatta
    22801 ccatcgatgc cgttatggca aagaatccga gtaatgtgag ctgcttagct ttacctgtct
    22861 gtactgatgt agccatatta tccccctaaa atggtattcc tgtcggaacc gcacctgttt
    22921 tgttctgaag cgtattcaga acaatatttt ccgttgctaa tgccagtgaa cagactttgg
    22981 aaattgtccc gaaacgggtt cgtttcggga caccgttacc gttaaacgtt atcaggtatg
    23041 tttaaagctg ttctgctggg caataccctg cagtttcggg tgatcgctga gatatttcag
    23101 ggaggctttg tagtcttcca gcaacagttc aacaaagtcc
//
LOCUS       DAJVUN010000054        22841 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.054, whole genome shotgun sequence.
ACCESSION   DAJVUN010000054 DAJVUN010000000
VERSION     DAJVUN010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22841
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.054"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..3636)
                     /locus_tag="OQQ76_001754"
                     /pseudo
     CDS             complement(1..3636)
                     /locus_tag="OQQ76_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415030.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
     gene            complement(4066..6482)
                     /locus_tag="OQQ76_001755"
                     /pseudo
     CDS             complement(4066..6482)
                     /locus_tag="OQQ76_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415029.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(6479..7165)
                     /locus_tag="OQQ76_001756"
     CDS             complement(6479..7165)
                     /locus_tag="OQQ76_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1968285.1"
                     /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE
                     SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT
                     LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
                     FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR
                     LVNGQLQEEA"
     gene            7136..7759
                     /gene="tesA"
                     /locus_tag="OQQ76_001757"
     CDS             7136..7759
                     /gene="tesA"
                     /locus_tag="OQQ76_001757"
                     /EC_number="3.1.1.5"
                     /EC_number="3.1.2.14"
                     /EC_number="3.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional acyl-CoA thioesterase I/protease
                     I/lysophospholipase L1"
                     /protein_id="HCS1968286.1"
                     /translation="MNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSA
                     SAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLR
                     GFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP
                     LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS"
     gene            7749..8558
                     /gene="ybbO"
                     /locus_tag="OQQ76_001758"
     CDS             7749..8558
                     /gene="ybbO"
                     /locus_tag="OQQ76_001758"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS1968287.1"
                     /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA
                     GCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGP
                     LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA
                     ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF
                     TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG"
     gene            8619..9473
                     /gene="cnoX"
                     /locus_tag="OQQ76_001759"
     CDS             8619..9473
                     /gene="cnoX"
                     /locus_tag="OQQ76_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperedoxin"
                     /protein_id="HCS1968288.1"
                     /translation="MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPI
                     LESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI
                     RALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIA
                     LNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAAL
                     ATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYR
                     RQLYALLY"
     gene            complement(9536..10315)
                     /gene="fetB"
                     /locus_tag="OQQ76_001760"
     CDS             complement(9536..10315)
                     /gene="fetB"
                     /locus_tag="OQQ76_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308581.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HCS1968289.1"
                     /translation="MNSHNITNESLALALMLVVVAILISHKEKLALEKDIFWSVGRAI
                     IQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVG
                     AGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
                     SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ
                     IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK"
     gene            complement(10302..10979)
                     /gene="fetA"
                     /locus_tag="OQQ76_001761"
     CDS             complement(10302..10979)
                     /gene="fetA"
                     /locus_tag="OQQ76_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter ATP-binding protein FetA"
                     /protein_id="HCS1968290.1"
                     /translation="MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGC
                     GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI
                     FPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL
                     LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ
                     EARYELA"
     gene            11125..12042
                     /locus_tag="OQQ76_001762"
     CDS             11125..12042
                     /locus_tag="OQQ76_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HCS1968291.1"
                     /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG
                     LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS
                     NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
                     DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA
                     FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSTNSKVVM
                     MPLEASSLLGSIAGIAELVKDSANKRTQP"
     gene            12039..12497
                     /locus_tag="OQQ76_001763"
     CDS             12039..12497
                     /locus_tag="OQQ76_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HCS1968292.1"
                     /translation="MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL
                     VVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFV
                     LESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAISS"
     gene            complement(12498..12905)
                     /gene="cueR"
                     /locus_tag="OQQ76_001764"
     CDS             complement(12498..12905)
                     /gene="cueR"
                     /locus_tag="OQQ76_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HCS1968293.1"
                     /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL
                     NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR
                     DQLLALANACPGDDSADCPIIENLSGCCHHRAG"
     gene            complement(13030..14322)
                     /locus_tag="OQQ76_001765"
     CDS             complement(13030..14322)
                     /locus_tag="OQQ76_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCS1968294.1"
                     /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA
                     STWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL
                     AVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
                     VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK
                     VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHV
                     GYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV
                     LIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI
                     VGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV"
     gene            complement(14325..15257)
                     /gene="glsA"
                     /locus_tag="OQQ76_001766"
     CDS             complement(14325..15257)
                     /gene="glsA"
                     /locus_tag="OQQ76_001766"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HCS1968295.1"
                     /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVA
                     IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI
                     ALELHGGKPLSPLVNAGAIATTSLINAENIEQRWQRILHIQQQLAGEQVALSDEVNQS
                     EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLINTVELATLGATLAAGGLN
                     PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI
                     AAFSPPLDEEGNSVRGQKMVASVAKQLGYNVFKG"
     gene            15519..18023
                     /gene="copA"
                     /locus_tag="OQQ76_001767"
     CDS             15519..18023
                     /gene="copA"
                     /locus_tag="OQQ76_001767"
                     /EC_number="7.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-exporting P-type ATPase CopA"
                     /protein_id="HCS1968296.1"
                     /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT
                     GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ
                     LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG
                     AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSL
                     WLGIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW
                     FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTAEGEK
                     SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGESVHAGT
                     VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALI
                     SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA
                     DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR
                     AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNQALLNDQQVDTKAIEADISA
                     QASQGATPVLLAIDGKVVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA
                     IAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG
                     SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWP
                     FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE"
     gene            complement(18238..18579)
                     /locus_tag="OQQ76_001768"
     CDS             complement(18238..18579)
                     /locus_tag="OQQ76_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HCS1968297.1"
                     /translation="MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSTL
                     INNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYL
                     ARREERAKKVA"
     gene            18717..19511
                     /locus_tag="OQQ76_001769"
     CDS             18717..19511
                     /locus_tag="OQQ76_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HCS1968298.1"
                     /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGS
                     HDMTPLPTRLLKKLKNADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHIS
                     QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
                     AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ
                     SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR"
     gene            19715..20194
                     /gene="ybaK"
                     /locus_tag="OQQ76_001770"
     CDS             19715..20194
                     /gene="ybaK"
                     /locus_tag="OQQ76_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK"
                     /protein_id="HCS1968299.1"
                     /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV
                     YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMAAQRSTGYLVGG
                     ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD"
     gene            complement(20231..21883)
                     /gene="ushA"
                     /locus_tag="OQQ76_001771"
     CDS             complement(20231..21883)
                     /gene="ushA"
                     /locus_tag="OQQ76_001771"
                     /EC_number="3.1.3.5"
                     /EC_number="3.6.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HCS1968300.1"
                     /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG
                     HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR
                     GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR
                     QDLKIAVIGLTTDDTAKIGNPEYFTDVEFRKPADEAKLVIQELQQTEKPDIIIAATHM
                     GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQAPVCMAAENKKQVDYVPGTPCK
                     PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL
                     YTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAA
                     QMDRTGAEFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV
                     TQMKPDSGAYPQFANVSFVTKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR
                     LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ"
     gene            22101..>22841
                     /gene="fsr"
                     /locus_tag="OQQ76_001772"
     CDS             22101..>22841
                     /gene="fsr"
                     /locus_tag="OQQ76_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosmidomycin MFS transporter"
                     /protein_id="HCS1968301.1"
                     /translation="MAMSEQTQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI
                     LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS
                     GLVLLALAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG
                     SSLGPLLTAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQLRMNKGKPKATIIN
                     PLPRNKVVLAVSILLILIFSKYFYMASIS"
BASE COUNT         5130 a         6466 c         5990 g         5255 t
ORIGIN      
        1 cccctccagc cctatcgggt cctgagtgat ataccgcccc tgcaacggat cgtagtaccg
       61 gttccggttg tagtacagcc ccgactcctt atcatactgc tgccccggca gccggtacgg
      121 ctggtgcagg tgatgcgggt tctcctcatt aagctggttg ccccattcat catattccgc
      181 gctccacgcc gtattgccgt cttcactgat aagcgccagc ggcaagcccc ggtggtcaca
      241 gtgataaaga tgtatttttc gctcaggcaa ataaaccggc tctatctgtg ccgccagccg
      301 ctccaccgtc agcccgcact gcgcaagcca ctggcggctt tcactgctca cgcggtctgc
      361 ccggatttcc ccctccagcc tgtccagcag ccccaccagt tcagccggga acaccacacc
      421 gtgaccgtct tcgctccctt cctgctgtaa cttctccgcc aggctgcggc actgcgcttt
      481 ctcccgttca ccgttgtctg tttcgatgcg gatgagcggc gcgaagctcc ccggctggta
      541 taccgtctgg atacgcgtgg tgtcggtctg taccgtcgtc agccggtcgc cgtcccatcc
      601 gtaccacgtt acctccggtt tacgcgacag cgacatccac cccgtcaagt cacgctcgcg
      661 acgccacacc cgtttccccg tccggcggct cagcgggtcg tagaggtagc ggctctcgac
      721 cagtggctcg ccatgctgta tccgcgtgtg gaacaccagg cggtgctggc tgtcgtagtg
      781 gtagtggtgg gtccgctcgt cgtccgtccg tatcacaccc gccgggatgc ggtccgtctt
      841 ctccgtcagt ctgccgtatt catcatagtg gtaaacatag tgcgcatcct ctgcgatgcg
      901 gttatccggc cacgccgtga gcgtgctgtc cgggtgtagc tccgggtccg gcagccggtt
      961 tcccgccggg tcggtcgcat acgggatgcg gatgtccagg tccggtgcga gggtgcgcac
     1021 gctctccagc ctgcccgtgg cgctgtagcc gtattcccgc gtctgtcgcg gaccgctgat
     1081 gcgcaccagg tcgccgttgt cattccaccc gtagtcacgg tcatacacca ggctgttcag
     1141 gtgctggctc tgtaactggc ctgcaggggt gtatgtgctg gtcagttcat atgcggcatt
     1201 actgcctgcc atgctgccga agctgcgcac cgtctcacgg tgcagcctgt cccgcgtata
     1261 ctcgaccagc ggcgtcccgc ccagcttcat gcccgccagg taaccgctgc cgtaggtcag
     1321 ccactccacc ggcggcaggc tgtccggcgt gacgcggttt gccagcccct gttcgttgta
     1381 ggcgtgtttc gtctcatgct gccacagcag ttcccccgtc tccgggttct ccaccgtctg
     1441 ccgttcgccc gtcaggcggc ccttatcgtc gtagccgtag tggacagcga cacggtggcc
     1501 ttcgctcagg tggctgattt ctctcagcca gccgtggccg tcatactgcc actgctctgc
     1561 cgggtcgccg ttcaccgtcc ggtgcgtgat gcggtccgac gcatcgtagt gccagagggt
     1621 gacaagcccc tcatcctcac tctgcgtgag ttttccggtc aggtcataat gataacgttg
     1681 cgtccgcccg tcaaagccgc cctgctgtac cagccggtcc agcgcatcgt agctgaagtc
     1741 gctgtgactg ccgttctcgt tagtcagact gatgacacgt ccggcagcat cgtactccat
     1801 actgcgcgtc agcccgccct gcgtggtgct gaccgccttt ccccacgcat cgtactgtgt
     1861 ctcgctccgg ttgccgtccg gggtgataac ggcagtcagg tcgcctgcgg cgttgtactc
     1921 atactgcgtt tcacggccct gtgcgtcttt caccgaggtt aaccggccac ggttgtcata
     1981 gtggcggtaa aggctgatac cttcctcgcg gtgaaccgcc gtcatctgcc gggtgctgcc
     2041 cgtcgcatcc gttgtcgtcg ccggtaactc actgtgcgcg tcatcgtagc ggtagcgtac
     2101 tgtctccccg ctgcgcgatg tctccgatac cagcctgccc ggttcatcat attcccggcg
     2161 gctctccagc ccgtccgggt acaccaccgc cgtcagctgg ttcccgtcgt tatagtaaaa
     2221 tttcgtctcc cgcccgtccg gtgtggtgat gtccgtgata tcgccggaca ccacattcag
     2281 accgtactct gtccgccgtc ccgccgcgtc cgtctgcgcc gtgagccttc ctgccgcgtc
     2341 atacccgctg cgcgtgacgc tgccgtccgc cagttctttt ttcaccaccc gtttcagccc
     2401 ggccccgcct tctgtatgca gcacctcacg ccggttcagg ctgtcggtga cggtgatgcg
     2461 gtcctgctca taaagatagc ggtagcttaa ccctgccggg ttcagttgct ccaccacccg
     2521 ccccgtatcg tcgtagcggt agcgcatctc cggccttccc gcgtaacggt gcgccaccat
     2581 ccggcccggg tgctgcgcgt catacgtgaa agcgcgcacc tgcgtattgc tgcggtcata
     2641 taccgccagc agttcaccgg cttccgtata cgtgtaccgc gccagtggcg caccgggcag
     2701 gctctccggg tatgccgggt cgtgcatcag ccacaccgcc gaaaggcgga tacccctgtc
     2761 ggggccgtac tctgtgctct ccggcagtga atcaggaatg tccggtcgtt ttgctccggc
     2821 gacgaccgcc tgctgccggg cctcttccgc ctgctgccgg gcctcttccg cccgctgcgc
     2881 ctgtgtggtc agcaccagac ggaactcccg cccggcaccg tccgtcacgc cggtgatttc
     2941 cccggccagg tcgcctgcgg cctcacgccg gtacgtcagc gtccgcccga agcggtccgc
     3001 catcccggta agcacccggt acggcggcag cggcgctggc agtacgtcct cagcacccgg
     3061 cacccgctca gatcacccca gtatccacca cggcccctgt gcgctgttgg tcgccaggta
     3121 aagatgcggg cttaaccgga tatccggcgg cagcgacgcc cacagccgtg ccagcgtgtg
     3181 gccgtccggc tgcgctgcct taccgccacg caccagccac attgactcac tgcggctgta
     3241 cacagcctcc cccggcagca gcggctcaaa gtgaatgctc cgcccgccgt tgtcgttgag
     3301 taccagtgca tcatcgcgta tctgtaagcg gatatcagaa ggcgctttcc agccggggcc
     3361 aaaaattccc actggcgcag gcgtcttcgt ccggtagctg ctgtaggtgc gggagagaat
     3421 gaacggcagc gggtcgggca gcgcaaggtc cgtctcgccg ggctgtactt ttgcaccgag
     3481 cagcgggttc accgggttgc ccgaggtcat cccgcccgga cacaccgagc acgccacgcc
     3541 agttggcgcg ccaattctta cacctgccga accctggaca atgggaccgc catactgggt
     3601 catatctccc tgacgcgccg ctggttttcc gctcatataa agtgcccttt tagttattgt
     3661 tcatatccct gtgttagcaa caaaaaaaat aaaatgacac acaagaccag ctaatgtatt
     3721 tatatatttt tcacataaac ttatttgttc tcaatcaaca ataactgtta ttacaggtca
     3781 ctttcaatat tttattaaac taaaattttt agcacagatg aattcatcat caacaaattc
     3841 actatatgga taatatccat tcaacgcata tgatttatga ttttattagt ctgagttatt
     3901 tttgtagggc tatatttaaa attattaaac tccaccgatt cagattaata tcagcaatag
     3961 aaagatagga aatcaccaat tcaataacat catcaatgaa acatattgta gaattaattt
     4021 aaacaaggcg ttccattcaa ccagaacgcc ccttatttac tctcatcacc ccgcaaactg
     4081 cctgaacagc gccttaccct taaccagtcg cgcacccagc cagccgccga aaagcgacag
     4141 cagcagcgca ccgctgcacg gcagaacaat ccacaatcgc cagtctggct cccacgggaa
     4201 atcaaacact ttcgcctgca acactgccag tgccgtttcc gcaccaattg cggccaccag
     4261 gcaggaaaca aacccaagca tggcgaactc acaccacaat gtcgtgcgca gcagtttttt
     4321 ccccgcaccg agtgtgcgcc ataccaccag ctcctgatga cgctggcgca ttcccacctg
     4381 cacctgtgcc agcaacagca acataccgca ggcggtgacc agcaccacca tcacctccag
     4441 cgcccgactt acctgctcca gcacctgacc gacctgtttt aaaatcgcgc caatatctaa
     4501 caggctaatg gtcgggaact ggcggttgag ttgcgtcaac atgccgttgc cattctccca
     4561 gcggaaactg gtaagccagc tctgcggttg cccgtctaat gccccttccg ggaaaataaa
     4621 atagaaatta ggccgcagac tttcccagtc cactttgcgc aggctggtca ctttagcgcg
     4681 gaactcctgg gtatcgccca taaaagtcac ggtatcaccg agggcaacgt ttaagcgttt
     4741 cgccagcccc tcttccatcg acacttcatc ggcttttggc ggccagttac cggcgacaat
     4801 cggattatga tcgggccgcg tattttgcca ggtaagattg agttagcgat taagcgcctc
     4861 atcttcatta ccttctgtcg gcttatcgtt aatcgccgtc agccgcgccc gcactaccgg
     4921 ataaaatgat tccgggacta tatgatgttc cgcgaggaac gcttttagcg gtgctacctg
     4981 ttctgtggcg atgttaatta aaaagtagtt cgggctttct ggcggtagct gctgccagcg
     5041 gtcgagcaga tcgccacgca ataccagcaa cagcgccagc agcataaagg agagcgaaaa
     5101 tgccgaaagc tggcttaacg ttgaccacgg ctgacgtaac aggcggctaa ccgccaggcg
     5161 cagaggtagc gatttcagcg tcatgcggcg aagtacattc agctgcatcc agcccagcac
     5221 accgcacagc aaagccagta ctaccacgcc cgccagcacc gcccaaagca gcatgctgcc
     5281 acccattaat ccggcgagca gcagcacaac cacatactga caatcggcag ataaaacttc
     5341 agcggccaga cgttcgctac cacatcatta cgtaatacgc gtaaaggctg cgttgccagc
     5401 aacaagcggt atggtcgtag ccccaccagc agcgagatga ccgtcatggt gccaagcgcc
     5461 cacagccacg gccagaggct ggctggcggt agtgcagcag gcagaacggg cttgagcagc
     5521 accatcaaca cgttttcgaa caacaggcct atggccccac cggtaacggc tgaaagcgtc
     5581 agcaccatca accactgatc gacgattagc ttacgcagtt gcgctcgccc tgcccccagc
     5641 gttttgagga tcgccaccag atcgtagcga ctgcgacagt aatgattcat cgctaccgcc
     5701 accgctgcca ctgccactgc cagcagcaag gtcagaagcg ccgaaagcag caggaactgt
     5761 tgcgagcgtt ccatcgatcg ccccagcgcg ccttcgtcct gttccagacc gtaccagcgt
     5821 tgttcgggtt taagctgagg taacaaccat ttctcatagc cgtcgagctg gttctcgttg
     5881 ccgccgaatt tataacgcca ggtgacccga ctccccggct gcacggctcc ggttttatcg
     5941 acatccgcca gattcatcat cagacgcgga gccatctgga aggggttaaa accggaatcc
     6001 ggttcctgaa tcacttctcc ggcaatccgc aaggtggcat cgcccacgtc aatggtgtcg
     6061 cccgttttca ggttaagcag tgccatcagg cgtggggcca gcaatacgct gcccgcctgc
     6121 ggtttcaggc cagggggatt agtttgcaga tcgccataca tcgggtagat atcatccacc
     6181 gctttgacgt tcgccagctg cggtgtgtcg cctgcaaagg tcattgtggc gaaagtcagc
     6241 tgcttgccga ctttcaggcc gcgcttttgc gcttcctcca gccacgcttg cggcacttcg
     6301 cgtgaactgc gcaacgcccg atcgcccgcc ataaactcac ggctttgctg gcttaagccc
     6361 ttctccatgc gatcgctgat attgcccagc gccagcacgc aggccaccgc caggcttagc
     6421 gccagccaga caattaatag cgacggcgaa cgccattcgc gccagaacca acgtgcaatc
     6481 atgcttcctc ctgcaactgc ccgttcacca gccgtaagca gcggtcgcag cgtgccgcca
     6541 gttgcaggtc gtgggtcacc ataatcaacg tggtgccatg ttcacggttg agggaaaaca
     6601 gcaggtcggc aattttatcg cccgtctggc ggtcaaggtt gccggtgggt tcgtcggcaa
     6661 acagcacatc aggtcgacca ttaaaggctc gtgccagcgc cactcgttgc tgttcaccgc
     6721 cggaaagctg tgccggaaga tgatccagac gtttacccag ccctaactgt tcgagcaacg
     6781 ctttcgcccc gttacgactt tccgcgctac tctcaccgcg cagcagagcc ggaagctcga
     6841 cgttttccag cgcgttaagg gtaggaatta acataaatga ctgaaaaaca aagccgacgt
     6901 gcttcgcgcg caactttgcc cgcgcttctt cgtccatatt atgtagcggt tgtcccacca
     6961 gactcacttc gccactgctg ccgtcatcaa gcccggcgag gatcgccagc aaggttgact
     7021 tacccgatcc cgactcgccc accagtgcga tggtctcgcc acgtttgaca accagctcaa
     7081 ctccggtgag gatggagagt tcatgctccc cctgaccgac ggacttctta agatgatgaa
     7141 cttcaacaat gttttccgct ggcatttgcc cttcctgttc ctggtcctgt taaccttccg
     7201 tgccgccgca gcggacacgt tattgattct gggtgatagc ctgagcgccg ggtatcgaat
     7261 gtctgccagc gcggcctggc ctgccttgtt gaatgataag tggcagagta aaacgtcggt
     7321 agttaatgcc agcatcagcg gcgacacctc gcaacaagga ctggcgcgcc ttccggctct
     7381 gctgaaacag catcagccgc gctgggtgct ggttgaactg ggcggcaatg acggtttgcg
     7441 tggttttcag ccacagcaaa ccgagcaaac gctgcgccag attttgcagg atgtcaaagc
     7501 cgccaacgct gaaccattgt taatgcaaat acgtctgcct gcaaactatg gtcgccgtta
     7561 taatgaagcc tttagcgcca tttaccccaa actcgccaaa gagtttgatg ttccgctgct
     7621 gccctttttt atggaagagg tctacctcaa gccacaatgg atgcaggatg acggtattca
     7681 tcccaaccgc gacgcccagc cgtttattgc cgactggatg gcgaagcagt tgcagccttt
     7741 agtaaatcat gactcataaa gcaacggaga tcctgacagg taaagttatg caaaaatcgg
     7801 tcttaattac cggatgttcc agtggaattg gcctggaaag cgcactcgaa ttaaaacgcc
     7861 agggttttca tgtgctggca ggttgccgaa aaccggatga tgttgagcgt atgaacaaca
     7921 tgggatttac cggcgtgttg atcgatctgg attcaccaga aagtgttgat cgcgcagcag
     7981 acgaggtgat cgccctgacc gataattgtc tgtatgggat ctttaacaat gccggattcg
     8041 gcatgtatgg ccccctttcc accatcagcc gtgcgcagat ggaacagcag ttttccgcca
     8101 actttttcgg cgcacaccag ctcaccatgc gcctgttacc cgcgatgtta ccgcacggtg
     8161 aagggcgtat tgtgatgaca tcatcggtga tgggattaat ctccacgccg ggtcgtggcg
     8221 cttacgcggc cagtaaatat gcgctggagg cgtggtcaga cgcgctgcgc atggagctac
     8281 gccacagcgg aattaaagtc agcctgatcg aacccggtcc cattcgtact cgcttcaccg
     8341 acaacgtcaa ccagacgcaa agtgataaac cagtcgaaaa tcccggcatc gccgcccgct
     8401 ttacgttggg accggaagcg gtggtcgaca aagtgcgcca tgcttttatt agcgagaagc
     8461 cgaagatgcg ctatccggta acgctggtga cctgggcagt aatggtgctc aagcgcctgc
     8521 tgcctgggcg cgtgatggac aaaatattgc aggggtgagt tgaagcgcgc gcttaagccc
     8581 ccatgtcaaa gaaaatatcg acaacagaga gcgactccat gtccgtagaa aatattgtca
     8641 acattaacga atctaacctg caacaggttc ttgaacagtc gatgaccact ccggtgctgt
     8701 tctatttttg gtctgaacgt agccagcact gtttgcagtt aaccccgatc ctggaaagcc
     8761 tcgcggcgca gtacaacggg caatttattc tggcgaagct ggactgcgac gcggagcaga
     8821 tgattgccgc ccagtttggt ctgcgcgcga ttccgaccgt gtatctgttc cagaacgggc
     8881 aaccggtaga tggcttccag gggccgcaac cggaagaggc gatccgcgcc ctgctggata
     8941 aagtgctgcc gcgcgaagaa gagctgaaag cgcagcaggc gatgcaactg atgcaggaag
     9001 gcaattacac cgatgccctg ccattgctga aagacgcctg gcagttgtcg aatcagaacg
     9061 gggagatcgg cctgctgctg gcagaaacgc tgattgcgct gaaccgttct gaagatgcgg
     9121 aagcggtgct gaaaaccatt ccgttgcagg atcaggacac ccgctaccag gggctggtgg
     9181 cgcaaataga actgctgaag caggcggctg atacgccgga aattcaacag ttgcaacagc
     9241 aggtggcgga gaatccagaa gatgccgcac tggcgacgca actggcgctg caactgcatc
     9301 aggttgggcg caatgaagag gcgctggagt tgctgttcgg gcatctgcgt aaagatctca
     9361 ccgccgcaga cggtcagacg cgtaaaacgt tccaggagat cctcgctgcg ctgggtacgg
     9421 gtgatgcact ggcgtcgaag tatcgccgcc agctgtatgc attgttgtat tgatattccg
     9481 ttgttcggca catgaaccac aacgccggat gcgatgctgc gcatccggca tcgcatcatt
     9541 tcttcttcaa ttgcgtcacc accaactggt ggcgcgaatt ataaaactta cgataggtta
     9601 aatagcaggc aataatggtc gacaagctgg cggttgagag cagcataaag gtcaccataa
     9661 tctgatattt aatcgccttc accggatcaa tcccggcaaa tatcagcccg gacatcattc
     9721 ctggtaaact cactaagcca accgtttttg ctgaatcgac cgtcggaatt aaagccgcgc
     9781 gaatactgtc gcgaatcaat atcgctgaag cctgcttcgg cgtcgcgcca agactcagtt
     9841 tctcctgaat ctgttgctgt tcgctaatga cccgttgccc taaattgttg taacacaacc
     9901 ccaccgctac catggcgtta ccggcaatca tcccggcgat agggatcacc tgcatcggga
     9961 taaattcaat cgaccctgag agaatcagca ccgccagggt aattcccgcc ccgaccgtaa
    10021 tggcaataaa cgatgagata aaagctttag caatatattt actgcgtttt tgcgcgttcc
    10081 acgccgcatt aaagcagata aataacacca tcaataatgt caggctggca tcatccacgc
    10141 tgaaaatata cttcagcaca tagccgacaa taatcagctg aattatcgcg cgcccgacgc
    10201 tccagaaaat atctttctcc agcgccagtt tttctttatg gctaattaag attgccacca
    10261 ccaccagcat taatgccagt gccaatgatt cgttagtaat attatgcgag ttcatagcgt
    10321 gcttcctgca tttctccggc atgcggttgc agtgtaatca ctttatccgc atgattaatt
    10381 tcgtctttat cgtgtgtcac ccacagcacg gcaatatttt gctcgcgcac ataacgatgg
    10441 atcatctcat taacgttatg tttattactt tcatccagcg cactggtgat ttcatccagc
    10501 aataaaacct tcggcataaa ttgcaggtta cgaatcagtg agatgcgttg tttttcacca
    10561 ccagatagct cggcgatatt tttcgtcaaa atgctgtccg gcaaggcgaa gcgttcgaga
    10621 aaatcgagaa aaatggctgg gtcaggctgc cggttacgga tctgccaggg aaagatcaga
    10681 ttatcgtata ccgtatcgcc aaacagcgtc ggtgtctggg cgcagtaaga gacttgttgg
    10741 cggtagattt ctggctttag tgtgctgaca tcctcacctt caaacagtaa cgttccgctg
    10801 gttgggctga tcaatgaagc aactattttt agcaacgtac ttttgccaca accagaagga
    10861 ccggtaatta acttaaattc gccagcacgc agcgaaaaat tgatgttatt aagaatcttc
    10921 gcatcacccg ccagatatcc tacgttttgt agctgaagca aaggactatt ttcctgcatc
    10981 gctgttccct ttttctgatt tttactaaaa acagtttatc cttcgcagga ataaggggga
    11041 actctctttc agtaatcagg tataatttgt ttaatcgagc agcaattttg ctgattatgg
    11101 acggtacaac aggaggtttt tccgatgctt atctttatcc cgattctcat ttttgtcgcg
    11161 ctggtcattg tcggcgcggg cgtcaaaatc gtgccgcagg gctatcaatg gacggtagaa
    11221 cgttttggtc gctataccaa aacgttacag ccggggctca gtctggtggt gccgtttatg
    11281 gatcgcattg gtcgcaagat caatatgatg gagcaagtgc tcgatatccc ttcccaggaa
    11341 gttatctcga aagataacgc caacgttacc atcgacgcag tctgttttat tcaggtgatt
    11401 gacgcgccac gcgctgccta tgaagtcagc aatctggagc tggcgatcat caacctgacc
    11461 atgactaaca tccgtaccgt gttgggttca atggaacttg acgaaatgct ctctcagcgc
    11521 gacagcatca actcacgcct gctgcgtatt gtcgatgaag ccaccaaccc gtgggggatt
    11581 aaagtcaccc gtattgaaat tcgcgacgtg cgcccaccgg cagagcttat ctcttcaatg
    11641 aacgcgcaga tgaaagcgga acgtaccaaa cgcgcttaca ttcttgaagc ggaagggatc
    11701 cgtcaggcgg aaatcctcaa agccgaaggt gaaaaacagt cgcaaatcct gaaagcggaa
    11761 ggcgaacgtc agtcggcgtt tttacaggct gaagcgcgtg aacgttccgc cgaagcagaa
    11821 gcccgcgcca ccaaaatggt gtctgaagct atcgcctccg gtgatattca ggcggtgaac
    11881 tacttcgtag cgcagaaata caccgaagcg ttacagcaga tcggttcctc cactaacagc
    11941 aaagtagtga tgatgccatt agaggccagc agcctgctgg ggtcgattgc cgggattgcc
    12001 gaactggtga aagacagcgc caacaaacgg actcagccat gatggagtta atggtcgttc
    12061 atccacatat tttctggctc agtctcggcg gtttgctgct ggcagccgag atgctgggcg
    12121 gaaatggtta tttgttgtgg agcggcgtgg cagcggtgat taccggcctg gtggtctggc
    12181 tggtgccgct gggttgggag tggcaagggg taatgtttgc catcctgacg ctgctcgccg
    12241 cctggctgtg gtggaaatgg ttgtcgcggc gggtgcgcga acaaaagcac agcgatagtc
    12301 atttaaacca gcgcgggcag cagctgattg gccgacgttt tgtgctggaa tctccgctgg
    12361 tcaacgggcg cggtcatatg cgcgtcggtg acagttcatg gcctgtcagc gccagcgagg
    12421 atctcggtgc aggtacgcat gttgaagtca ttgcgataga agggataacc ctacatatcc
    12481 gagccatctc gtcttaatca ccctgcccga tgatgacagc agccggagag attttcgata
    12541 atcgggcagt cggcgctgtc atcgccaggg caggcattcg ccagtgccag cagctggtcg
    12601 cgcatggatt gcagctcctc aatgtgtcgt tcgatctccg ccaccttctc cagcgtgcgc
    12661 cgtttgacgt cggcgctgtg ccgctgcggg tcgttaaaca gattcaccag ctcgccgctc
    12721 tcttccaggt taaagcccac ctgccgtgcc tggcgcagta aggtcagttc gttgagatgc
    12781 tgctgcgtgt aggtgcgata accgttttcg ctgcgcatcg gcggcgtcac cagccccttc
    12841 tcttcataga agcgaatggc tttgctagtc aggccggtaa tttttgctac atcgctgatg
    12901 ttcatcgttc gcgcaacgcc tcctgtgctt tgttaaaggg tttcaacaga tattcaagca
    12961 cgtttttttg ccagtgcgaa tatcgaccgc caccacaata atacaggaag tactgcgcac
    13021 agagagatgt tatacggttt tattgcgctt catgaccatt gccacaataa ggctgagtaa
    13081 gagtgagcca ataatccata tcaacgcacg gctaccctgg gaccacagac tgtagataaa
    13141 gccaacgatc accaacaaca tcaccaacgt accaacgata agaatcggca acgaggcgtg
    13201 aatatcatga cgcaggcgga tcgccaccac aaacaccgcc aggtagcaaa tcaaaaaggt
    13261 ggcgctggca acgctggcga gtgagcctaa attcagtgcc gccgtcatca gcataatcaa
    13321 caccacgaca atgatgttgc cccaggtact ctgccgccac agggatttat tcattagctt
    13381 cggcagttcg cgttcgctgc ccatgttgtc catgatgtta aacacggcga acaggttcgc
    13441 gttaatggct gaagccgtcg ccagtaaagc gccgatgacg acgatcacat aacccacatg
    13501 tccgagcagc ggagaagcag cctgcgctac ggcggtatcg gcatattttt ctaactctaa
    13561 tgccgataca tcgctaagca aaaccagtgc cagcgagata taaagcaacg tggtaacgcc
    13621 aatcgccacc agaaacgccc gtggcataat gacctgcgga tctttcactt tatccgccgc
    13681 gttcgccatc atgccaaagc ccgcataggc aaggaaagtt atcccaatac aggagaagaa
    13741 cgcaccggag ctggggggcg cagagacgga aatatgcgct ggttgcagcg accagacacc
    13801 ggcaataatc agcaataaca ggatcatcat tttaatgccg acgaggatca cttccagccg
    13861 ccctaccgca tggttgctta aggagttgaa aagcgtcatc accgcaatgc tccccaacgc
    13921 gtagagcaaa ataaggtgct cctcctggct gccttcatgc aaaaactgca cggcataagc
    13981 gccaaaagca tgggcgacca tggcgatgct caccgccagc gtcaacaggt acagtaacga
    14041 gagcgccagc gaaaagacgc cgttgcctaa tccgcgacga aagaagtcga taatgccgcc
    14101 attactggga tagctcgccc ccagacgcgc ataggcataa ccggaaaaca tcgccacaat
    14161 accgccaaaa gcaaaggcga cccaggtcga ggcttccatt agcaacgcag cctgccccag
    14221 cagcgcgaag atccccgccc ccaccattgc cccaataccg atggaaacga cattccatag
    14281 accgaggggt ttgttaccgt tattaccttc cgtgttcatc atgatcagcc cttaaacacg
    14341 ttatagccga gttgcttagc gaccgatgcc accatttttt gaccgcgaac actgttacct
    14401 tcttcgtcca gcggtggtga gaacgcggca attcccatca cgccagggac gaccgccaga
    14461 ataccgccac ctacaccgct tttgcccggt aaaccaacgc gatacgccca gtcaccggag
    14521 cgaccataca gcccttccat catcatttcg gccagaatgt acggcacgtt gtcggcctga
    14581 agaacgcgtt tatgcgtcag tggattcaga ccacccgccg ccagcgtcgc gccaagcgtt
    14641 gccagttcaa cagtattgat gagcgtggag cactgacggg tgtacacgtc acaggcttcc
    14701 attgcatcac aatagagata tccggcggag tacagcagcc aggctatggc ccggttatgg
    14761 aagttggttg tttgttccga ctggttgact tcgtcagaga gcgctacctg ctcaccagcc
    14821 agttgctgtt ggatatgtaa aattcgctgc cagcgttgtt caatattttc agcgttaatc
    14881 aggctggtgg tggcaatagc gccagcattt accagtggcg aaagcggttt gccgccatgc
    14941 aactctaagg cgataactga gttaaagggc aatccggtcg ggtcagcgcc aattttgtcc
    15001 tgtaccgcct gcgggccgac atcttctaac gcaagggcta acgtacagac tttcgagatg
    15061 gattccagtg caaagcggta atcactgtca cccgcactat agacgttgcc atcgcaggtc
    15121 acgatagcca ctgccgccag ttgacctggt acattcgcca gaaagggaat gtaatcggca
    15181 ttttgtccgc cgttaagtga gtgaaattgg gtgtaagcct gatccactgc ctgctgtaat
    15241 ttgtttgcat ctaacatctt ttgttaactc ctttttatag atgcgggagg taattcctca
    15301 ccccggtgcc gattttcagg catcctgatt taacttagca ccagcaactt aactacagga
    15361 aaacaaagaa ataaatgtct aatcctgatg caaatcgagc cgatttttta atctttacgg
    15421 acttttaccc gcctggttta ttaatttctt gaccttcccc ttgctggaag gtttaacctt
    15481 tatcacagcc agtcaaaact gtcttaaagg agtgttttat gtcacaaact atcgacctga
    15541 ccctggacgg cctgtcctgc ggtcactgcg ttaaacgcgt gaaagaaagt ctcgaacagc
    15601 gcccggatgt ggaacaagcg gatgtgtcta tcactgaagc gcacgttacc gggactgcca
    15661 gtgcagaaca gctgatcgaa accatcaaac aagcgggtta tgacgcatct gtaagccacc
    15721 caaaggctaa accgctggcg gagtcatcaa tcccgtcgga agcactgaca gcggtttctg
    15781 aggcgcttcc ggcagcgacc gccgatgacg atgacagcca gcagttgctg ctgagcggca
    15841 tgagctgcgc cagctgtgtc acccgcgtac aaaatgcgct gcaaagcgta ccgggcgtca
    15901 ctcaggcacg ggtaaacctg gcggagcgta ctgcgctggt gatgggcagt gcctccccac
    15961 aagatttagt gcaggcggtg gaaaaagcgg gctacggcgc ggaagcgatt gaagatgacg
    16021 cgaaacgccg cgagcgccag caggaaaccg ccgtcgctac gatgaagcgc ttccgctggc
    16081 aggcgattgt cgcactggcg gtgggtattc cggtaatggt ctgggggatg atcggcgata
    16141 acatgatggt caccgctgac aaccgcagcc tgtggttagg tatcggcctg ataaccctag
    16201 cggtaatggt tttcgccggc gggcattttt accgcagcgc gtggaaaagc ctgctgaacg
    16261 gtgcggcgac gatggatacg ctggtggcgc tgggtacggg tgtggcgtgg ctctattcga
    16321 tgagcgtcaa cctgtggccg cagtggttcc cgatggaagc gcggcatctt tactatgaag
    16381 ccagtgcgat gattatcggt ctgattaatc tcggccatat gctggaagcg cgcgcgcgtc
    16441 agcgttcttc taaggcgctg gagaaattac tcgatttaac cccaccgacg gcgcgagtgg
    16501 tcaccgcaga gggtgaaaaa agcgtgccgc tggcggaagt tcagccaggg atgttactgc
    16561 gcctgacgac cggcgatcgc gtgccggtag atggcgagat tacccagggc gaagcatggc
    16621 tggatgaagc gatgctgacg ggcgaaccaa tcccgcagca aaaaggcgaa ggcgaaagcg
    16681 tccatgccgg gacagtggta caggacggta gcgtgctatt tcgcgccagt gcggttggca
    16741 gccataccac gctgtcaagg attattcgca tggtgcgcca ggcccagagc agcaagccag
    16801 aaatcggtca gctggcggat aaaatctcag ccgtatttgt gccggtagta gtggtgattg
    16861 cgctgatcag tgcagcaatc tggtatttct ttggtccggc accgcagatt gtctataccc
    16921 tggtgatagc caccacggtg ctgattattg cctgtccgtg tgcgctgggg ctggcgacgc
    16981 caatgtcgat tatttccggc gtcgggcggg cggctgagtt tggcgtgctg gtgcgggacg
    17041 ccgacgcgct gcaacgcgcc agtacactcg ataccgtcgt gttcgataaa accgggacgc
    17101 tgaccgaagg gaagccgcag gttgtcgcag taaaaacatt tgctgatgtt gatgaagcgc
    17161 aagcattgcg tctggcggcg gcgctggagc aaggttccag ccatccgctg gcacgagcga
    17221 tcctcgataa agcaggcgat atgcagctgc cgcaggtcaa cggtttccgc acattgcgcg
    17281 ggctgggcgt aagcggtgaa gctgaaggtc atgcgttatt gctgggtaat caggcgctgt
    17341 taaatgacca gcaagtcgat actaaagcga ttgaagccga tatttcagct caggcatcgc
    17401 aaggagcaac gcctgtgctg ctggcgattg acgggaaagt agtagccctg ctggctgtac
    17461 gcgatccgtt gcgtagtgat agcgtggcgg cgctgcaacg cctgcataaa gcgggatatc
    17521 gtctggtgat gttgaccggg gataacccaa ccaccgccaa tgcgatcgcc aaagaagcag
    17581 ggattgatga ggtgatcgcc ggggtgctgc cagacggtaa agccgaagcg atcaaacgtc
    17641 tgcaaagtga aggacgtcag gtggcaatgg tgggcgacgg cattaacgac gcgccagcgc
    17701 tggctcaggc tgatgtcggt attgcgatgg gtggcggcag tgatgttgcc attgaaaccg
    17761 cggcgattac cctgatgcgc catagcctga tgggtgttgc agatgcgctc gcgatttccc
    17821 gcgcaacgct gcgcaatatg aagcagaacc tgctcggtgc gtttatctac aacagcattg
    17881 gtattccggt cgccgctggt attttgtggc cgtttactgg aacactgctt aacccggtag
    17941 ttgccggagc ggcaatggcg ctctcgtcga ttaccgtagt gagtaacgcc aaccggttgc
    18001 tgcggtttaa accgaaggaa taagtacgtc attgcggatg cgctgcttta gggcggcgca
    18061 tttggcatcg acgcatgact gccggatgcg gcgtaaacgc cttatccggc ctacggttca
    18121 ggcacaggtt tgtaggcctg ataagacggg taagcgtcgc atcaggcaat ggtgctcgga
    18181 tgccggatgc ggcgtgaacg ccttatccgg cctacgagat gaagcgatgt tttggcctta
    18241 cgcgaccttt tttgcacgct cttcacggcg tgccaaatat tcagccactg tttcaatccg
    18301 tcccaattct tcctgggtgc gcatgttgtt ttcaacttcc caaagatcaa ctgccgcctg
    18361 gaggtttagc caaaaatcga ctgtggtatc aaaaactttc gccagacgga atgccatctc
    18421 agtggtgagt ttacgattat tattgatcag tgtactgacg ctattacgat gaacatgcag
    18481 caactctgct aactcattga ttttcaaatc gagcggttcc agatattcat agagaagaat
    18541 atctccgggt gtcgtcggtt ttcttgttgc ctgtttcatg gtttttaact gttgcttccc
    18601 tgtgaatagc gatgcaagaa catactgaat catacaaaca cattaaacaa gtccccaact
    18661 ccatttgcgc catccctcac cgcgcgctag catgatattt cacaaaggga ggtcgtatgg
    18721 atctgttgta ccgggtaaaa acgctttggg ccgcgctgcg cggtaatcat tacacctggc
    18781 ctgccatcga tatcaccctt cccggcaatc gccattttca tctgattggc agtattcata
    18841 tgggtagcca cgatatgact cccctgccca cccgtttgct caaaaagctc aaaaacgccg
    18901 atgcgctgat cgtcgaggcg gatgtttcca ccagcgatac gccttttgct aatttgccta
    18961 cttgcgaggc gctggaagag cgcattaacg aggagcaact ccaaaatctg cagcacatta
    19021 gccaggagat gggcatttct ccgtcgctct tttctactca accgctgtgg caaatcgcga
    19081 tggttcttca ggcgacgcag gcacaaaaac tggggctgcg ggcagaatac ggtatcgatt
    19141 accagttatt gcaggcggcg aagcaacaac ataaacccgt gattgaactg gaaggggctg
    19201 aaaaccagat taccatgttg ctccagctcc ctgacaaagg actggcgctg ctggacgata
    19261 cgctgaccca ctggcatacc aacgcacggt tgctgcaaca aatgatgagc tggtggctga
    19321 atgcacctcc gcaaaataat gatataacgc tgcccaatac gttcagtcag tcgctgtacg
    19381 atgtgctgat gcatcagcga aatctcgcct ggcgggataa attacgcgcc atgccgccgg
    19441 ggcgatatgt ggtcgcggtc ggtgcactac acctgtatgg agaagggaat ttgccgcaaa
    19501 tgttgcgcta aaaaaatggc caatatcgct attggcccgt caaagaggaa tttcattttt
    19561 ttattattat gccgtcactt taagcgacgg tgtaactcga ttgtcgctca atctcaccat
    19621 cctgccaata ctcttaggca agatgactct tttttttgga ccgccatcag gcgtatgctt
    19681 gcttcgtttt tttgtttaag gcaggaaaat taccatgaca cccgcagtta aattactcga
    19741 aaaaaacaag atttcgtttc aaatccatac ctacgagcac gatccggctg aaaccaattt
    19801 tggcgatgaa gtcgtcaaaa aattaggttt gaatccggat caagtctaca aaacgctact
    19861 ggtggcagtg aacggtgata tgaaacatct ggcagtggcc gttacgccgg tcgcaggtca
    19921 actggatctt aaaaaagtag caaaagcgct gggtgccaag aaagttgaga tggccgatcc
    19981 gatggccgcg cagcgttcga cggggtacct ggttgggggg attagcccac tggggcagaa
    20041 aaaacgtctg ccgacgatta tcgacgcccc cgcacaagaa tttgccacta tttatgtttc
    20101 tggcggcaag cgcggactgg atatcgaact ggcggcaggc gatctggcga agatcctcga
    20161 tgccaaattt gctgatatcg cccgccgcga ttaagcattg tgccggatgc aaatatccgg
    20221 cactttcgga ttactgccag ctcacctcac ctttcggttc ataaacactc acatccagcg
    20281 gcgagctttt ctggatatac gctttcagca cttcggcatc aataaagccg gtattcacat
    20341 agcccggttt gttatcaagg cgcggatagc catcaccgcc ggtggcattg aagtttaatg
    20401 tcgccatacg gtaagttttc gccggatcga ccggttcgcc tttgattttc aggtcgttga
    20461 gtttgccgtc tttcgtcaca aagctaacgt tggcaaattg cgggtaggca cctgaatctg
    20521 gcttcatttg tgtgacggcg gtcaggtaat caatcacctc tttaccggtc atgtcggcat
    20581 acaccaccac attgccgaat ggctgcactt tcagtacgtt tttatagctg atatcgcctg
    20641 cttcgataga atcacgaatt cctcctccac tcatcaccgc aaattcggca ccagtgcgat
    20701 ccatttgggc tgccagaatc aaccgcccca tattggtctg tacaaaacgc actttgtcac
    20761 gatcgccttc cagacgacca ttggtttcgc ctattttcac ttccaactgc gctttgcctt
    20821 tgttctggaa cggcgataac agcgagatca tttgctggtt ctcagcgatt tcaggagtgt
    20881 aaagcacgcg ctcgcttttc ccgtcttccc aggtcacttt cttcttcagg ttcaccggaa
    20941 tcagctggta gttaaccatt ttcatttcgc cattacgaaa ctcaaaatca gcccgtccca
    21001 cgtatttgcc ccactcatgc gcctgcacaa tccagatgcc gttttgttga tctggtttgc
    21061 atggcgtacc cggcacgtaa tcgacctgtt ttttgttttc tgccgccatg cagaccggag
    21121 cttgcgagtg accaccgacg atcatcgcca gcgatccggc aggcagcgcg cgtgccatct
    21181 ccacatcgcc cggtgcgtta gagccgtgct caccattatc gtaatgcccc atatgggtcg
    21241 ccgcgataat aatgtctggc ttttctgtct gttgcagctc ctgaatcacc agcttcgctt
    21301 catcggcggg cttacgaaat tcgacatcag tgaagtattc cgggttacca atttttgctg
    21361 tgtcatcggt tgtcagccca atgacggcaa ttttcagatc ctgacgctta aacagcgccc
    21421 atggtttaaa caggcgctcg ccggtacttt tctgatagat attcgcggaa agcaacggga
    21481 acttggccca cttttcctgc tggcgtaata cggtgagcgg attatcaaat tcatgattac
    21541 cgatcgccat cgcgtcatag cccaccagat tcataccgcg aaaatcaggt tcggcatcct
    21601 gtaagtcaga ctcgggcacg ccagtgttaa tgtcgccacc ggaaagtagc agcacgctac
    21661 cgccttcagc cgcaacctct ttgcggatac catccaccag cgttttttgc gccgccagac
    21721 catattcgcc atattcattg cgccaaaaat gcccatgatg atcattggta tgcagaactg
    21781 taattttgta ggttttatcc tgctcatacg ccagagcagt ttcactcgcc agtgtaaatg
    21841 tggttaacag cgctaacgcc acgccccgct gcaataattt catacttctc tccctgacct
    21901 gatttcaacg tgttgaaaaa tagtatgacg caacatcata gacaagtctg cgtccggtga
    21961 agataaatct gcatccagat tagaaattct gtattcggcg ttgagacttc cttcaggcga
    22021 cgcatacagg tatgttagtc gggtaataat cacaaataag atcattcttt acatcgcaac
    22081 cctgaaaaag tgactttcct atggcaatga gtgaacaaac ccagcctgtg gcgggcgcgg
    22141 ctgcgtcaac gaccaaggcc cgaacatcgt ttggtatttt aggtgctatc agcctctcac
    22201 atctgctgaa cgacatgatc caatcgctga ttctggcgat ttatcctctg cttcagtcag
    22261 aattttctct gacatttatg cagattggca tgataaccct caccttccag ctcgcctctt
    22321 cgctactgca accagtggtc ggctactgga ccgataaata tccgatgccg tggtcgttgc
    22381 caattggcat gtgctttacc ttaagtggtc tggtgctgct tgcgctggcg ggcagttttg
    22441 gcgcagttct gctggcggcg gcgctggtcg gtaccggttc atcggtcttt catccggaat
    22501 cttctcgcgt agcccgtatg gcttccggcg ggcggcatgg cctggcgcaa tctatctttc
    22561 aggtcggcgg caactttggc agttccctgg gacccttgct gacggcggtg attatcgcgc
    22621 cttatggcaa aggcaacgtt gcctggtttg tgcttgcggc actgctggcg atcgtggtgt
    22681 tggcgcaaat tagccgttgg tactcggcac agctccgaat gaataaagga aaacccaaag
    22741 cgacgataat caatccactg ccgcgcaaca aagtggtact ggcagtcagc attctgttaa
    22801 tcctcatttt ctcgaaatat ttctatatgg cgagcatcag c
//
LOCUS       DAJVUN010000055        22675 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.055, whole genome shotgun sequence.
ACCESSION   DAJVUN010000055 DAJVUN010000000
VERSION     DAJVUN010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22675
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.055"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(378..1355)
                     /gene="epmA"
                     /locus_tag="OQQ76_001773"
     CDS             complement(378..1355)
                     /gene="epmA"
                     /locus_tag="OQQ76_001773"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HCS1968302.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            1680..3488
                     /gene="frdA"
                     /locus_tag="OQQ76_001774"
     CDS             1680..3488
                     /gene="frdA"
                     /locus_tag="OQQ76_001774"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HCS1968303.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRLAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3481..4215
                     /gene="frdB"
                     /locus_tag="OQQ76_001775"
     CDS             3481..4215
                     /gene="frdB"
                     /locus_tag="OQQ76_001775"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur protein"
                     /protein_id="HCS1968304.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4226..4621
                     /gene="frdC"
                     /locus_tag="OQQ76_001776"
     CDS             4226..4621
                     /gene="frdC"
                     /locus_tag="OQQ76_001776"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HCS1968305.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            4632..4991
                     /gene="frdD"
                     /locus_tag="OQQ76_001777"
     CDS             4632..4991
                     /gene="frdD"
                     /locus_tag="OQQ76_001777"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HCS1968306.1"
                     /translation="MINPNPKHSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5054..6187
                     /locus_tag="OQQ76_001778"
     CDS             5054..6187
                     /locus_tag="OQQ76_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS1968307.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QIGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6276..6809
                     /gene="blc"
                     /locus_tag="OQQ76_001779"
     CDS             6276..6809
                     /gene="blc"
                     /locus_tag="OQQ76_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS1968308.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(6806..7123)
                     /gene="sugE"
                     /locus_tag="OQQ76_001780"
     CDS             complement(6806..7123)
                     /gene="sugE"
                     /locus_tag="OQQ76_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS1968309.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7305..7451)
                     /gene="ecnB"
                     /locus_tag="OQQ76_001781"
     CDS             complement(7305..7451)
                     /gene="ecnB"
                     /locus_tag="OQQ76_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS1968310.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(7562..7687)
                     /gene="ecnA"
                     /locus_tag="OQQ76_001782"
     CDS             complement(7562..7687)
                     /gene="ecnA"
                     /locus_tag="OQQ76_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS1968311.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(7739..8305)
                     /gene="efp"
                     /locus_tag="OQQ76_001783"
     CDS             complement(7739..8305)
                     /gene="efp"
                     /locus_tag="OQQ76_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS1968312.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8347..9396
                     /gene="epmB"
                     /locus_tag="OQQ76_001784"
     CDS             8347..9396
                     /gene="epmB"
                     /locus_tag="OQQ76_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS1968313.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            9770..10639
                     /locus_tag="OQQ76_001785"
     CDS             9770..10639
                     /locus_tag="OQQ76_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjeJ family protein"
                     /protein_id="HCS1968314.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL
                     RVQSTSKTAPQAK"
     gene            complement(10842..11195)
                     /locus_tag="OQQ76_001786"
     CDS             complement(10842..11195)
                     /locus_tag="OQQ76_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HCS1968315.1"
                     /translation="MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQ
                     LIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFV
                     PTDSQIIGQVYKCPN"
     gene            complement(11333..12979)
                     /gene="groL"
                     /locus_tag="OQQ76_001787"
     CDS             complement(11333..12979)
                     /gene="groL"
                     /locus_tag="OQQ76_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120975.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HCS1968316.1"
                     /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITE
                     GLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK
                     LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP
                     FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID
                     GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAP
                     LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA
                     SVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM"
     gene            complement(13023..13316)
                     /locus_tag="OQQ76_001788"
     CDS             complement(13023..13316)
                     /locus_tag="OQQ76_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HCS1968317.1"
                     /translation="MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVG
                     NGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA"
     gene            13592..14848
                     /gene="yjeH"
                     /locus_tag="OQQ76_001789"
     CDS             13592..14848
                     /gene="yjeH"
                     /locus_tag="OQQ76_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine/branched-chain amino acid
                     transporter"
                     /protein_id="HCS1968318.1"
                     /translation="MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAAQVAGNNSLWA
                     WPVLIILVFPIAIVFAILGRHYPSAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPA
                     ALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRGASSSANLQTVIAGLIVALIV
                     AIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFP
                     RALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGY
                     LACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIH
                     ALEINLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKS
                     LYALIVLAGLWLLLPKRKTPENGITT"
     gene            complement(14864..15340)
                     /gene="fxsA"
                     /locus_tag="OQQ76_001790"
     CDS             complement(14864..15340)
                     /gene="fxsA"
                     /locus_tag="OQQ76_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418564.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HCS1968319.1"
                     /translation="MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM
                     SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP
                     PVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD"
     gene            15677..17113
                     /gene="aspA"
                     /locus_tag="OQQ76_001791"
     CDS             15677..17113
                     /gene="aspA"
                     /locus_tag="OQQ76_001791"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313147.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HCS1968320.1"
                     /translation="MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDI
                     PEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA
                     GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL
                     IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNI
                     QRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGA
                     YVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE
                     VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCIN
                     GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE
                     AELDDIFSVQNLMHPAYKAKRYTDESEQ"
     gene            17231..18532
                     /gene="dcuA"
                     /locus_tag="OQQ76_001792"
     CDS             17231..18532
                     /gene="dcuA"
                     /locus_tag="OQQ76_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuA"
                     /protein_id="HCS1968321.1"
                     /translation="MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGN
                     IPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFA
                     GTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH
                     GISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIE
                     IKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVI
                     CKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLA
                     VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ
                     MDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML"
     gene            18648..18986
                     /gene="cutA"
                     /locus_tag="OQQ76_001793"
     CDS             18648..18986
                     /gene="cutA"
                     /locus_tag="OQQ76_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation tolerance protein CutA"
                     /protein_id="HCS1968322.1"
                     /translation="MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLSP
                     GATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTD
                     YLSWLNASLR"
     gene            18962..20659
                     /gene="dsbD"
                     /locus_tag="OQQ76_001794"
     CDS             18962..20659
                     /gene="dsbD"
                     /locus_tag="OQQ76_001794"
                     /EC_number="1.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HCS1968323.1"
                     /translation="MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFTFDFQQN
                     QHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTL
                     PVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAASQPVSVSQQEQHT
                     AQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA
                     LTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLT
                     LMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL
                     GMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSA
                     LGVAFFGWAFITSLQAKRGWMRVVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNF
                     TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA
                     NITANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP"
     gene            20696..21271
                     /locus_tag="OQQ76_001795"
     CDS             20696..21271
                     /locus_tag="OQQ76_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1968324.1"
                     /translation="MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPD
                     KEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKNNRYPGCLFIA
                     ACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRML
                     VNRSQADVDTAHRLAEDILRFARCRQGGALT"
     gene            21378..21453
                     /locus_tag="OQQ76_001796"
     tRNA            21378..21453
                     /locus_tag="OQQ76_001796"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21411..21413,aa:Phe,seq:gaa)
     gene            21651..22622
                     /locus_tag="OQQ76_001797"
                     /pseudo
     CDS             21651..22622
                     /locus_tag="OQQ76_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311870.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
BASE COUNT         5632 a         5843 c         5636 g         5564 t
ORIGIN      
        1 gaatggaata aagaataaca atgcagaaaa tatataaaag ggaatcgcac tataacccat
       61 taagtaataa gccgatgggc tattggcaaa tccaaatacg gaagtaaaga tcatcaatat
      121 gagtcctatc agactcatct tttttatcgt gtgaggcatg aaaccatcct tcatttcagc
      181 gcgtgtataa cacgtgccca ctgaactgca ctgcgcaaca ttgagcaggc agcgtaaaaa
      241 ccaatacaga attgataccc ggatgatatc aaatatccag tcttaaattg tggcctttaa
      301 cggaaaaatg aaaatatatg ctacagaatg gcgcttatca cgccattctt cgctgttaat
      361 tcagtaattt ttcagaatta tgcccggtca acgctaaagg cgatgacttc agccagtgtc
      421 tccgcgccca gcgccaacat caccagacga tcaacaccta atgccacgcc ggaacagtca
      481 ggcataccaa ctttcaaggc ttcaatcaga ttctggtcaa tggggtgctg cggcaaaccg
      541 cgcgccgcgc gcttacggtt atcttgttca aagcgttgtt gctgctcacg ggcatccgtt
      601 aattcatgga aaccattcgc cagctcaata cctttataat aaacctcaaa gcgttcagcg
      661 acccgatgat cttcggtact gatttgcgcc agtgatgcct ggctggctgg aaagtggtac
      721 acaaaggtcg gtttttcttt gccaatattt ggctctacgc caaaggtaaa cagcaattgt
      781 agcaacgtgt cgcggtcttc ttcggtatca gcaacgttac tcaaatccag tttcgctgcg
      841 acttcccgca gttgcgtttt gtcggcagag agcgggtcaa tttccagata acgcaagaaa
      901 gcttgttgat aagaaaggct ttctgctgcc gggcagtcca gcacctgttg taagagatcg
      961 tccacctcgt tcatcaaccg gtacatatca tagtgcggtc gataccactc aagcatagtg
     1021 aactcagggt tgtgataacg ccccatctct tcattacgga agctgcggca cagctggaat
     1081 accggcccac aaccggcaac cagcaggcgt ttcatatggt attccgggct ggtcattaac
     1141 cagagattca tcccctgcga atgcccgggg ccaacgaaac gtgtctcaaa cgggaccaaa
     1201 tgaatatcgg ttaccgtcgc ctggctcata caaggcgtct ccacctccag cactccacga
     1261 tcagcaaaga aacgacggat ctccgccata atcgccgcgc gttttaataa gttaggaatg
     1321 gatgcgctcg gctgccagga tgccgtttcg ctcatagtta aatctccagt ttttgacaag
     1381 ggcacgaagt ctactcgcaa cgcgacggcg agacaaattt tacgcaggaa tcaaacagcg
     1441 gtgggcagtg actaaaaaaa gcacgatctg atggtttagt aattaaatga atcatcttca
     1501 gtgataattt agccctcttg cgcactaaaa aaatcgatct cgtcaaattt cagacttatc
     1561 catcagacta tactgttgta cctataaagg agcagtggaa tagcgttcgc agaccgtaac
     1621 tttcaggcac ttaccctgaa gtacggggct gtgggataaa aacaatctgg aggaatgtcg
     1681 tgcaaacctt tcaagccgat cttgccattg taggcgccgg tggcgcggga ttacgtgctg
     1741 caattgctgc cgcgcaagca aatccaaatg caaaaatcgc actaatctca aaagtatacc
     1801 cgatgcgtag ccataccgtt gctgcagaag ggggctccgc cgctgtcgcg caggatcatg
     1861 acagcttcga atatcacttt cacgatacag tagcgggtgg cgactggttg tgtgagcagg
     1921 atgtcgtgga ttatttcgtc caccactgcc caaccgaaat gacccaactg gaactgtggg
     1981 ggtgcccatg gagccgtcgc ccggatggta gcgtcaacgt acgtcgcttc ggcggcatga
     2041 aaatcgagcg cacctggttc gccgccgata agaccggctt ccatatgctg cacacgctgt
     2101 tccagacctc tctgcaattc ccgcagatcc agcgttttga cgaacatttc gtgctggata
     2161 ttctggttga tgatggtcat gttcgcggcc tggtagcaat gaacatgatg gaaggcacgc
     2221 tggtgcagat ccgtgctaac gcggtcgtta tggctactgg cggtgcgggt cgcgtttatc
     2281 gttacaacac caacggcggc atcgttaccg gtgacggtat gggtatggcg ctaagccacg
     2341 gcgttccgct gcgtgacatg gaattcgttc agtatcaccc aaccggtctg ccaggttccg
     2401 gtatcctgat gaccgaaggc tgccgtggtg aaggcggtat tctggtcaac aaaaatggct
     2461 accgttatct gcaagattac ggcatgggcc cggaaactcc gctgggcgag ccgaaaaaca
     2521 aatatatgga actgggtcca cgcgacaaag tttctcaggc cttctggcac gaatggcgta
     2581 aaggcaacac catctccacg ccgcgtggcg atgtggttta tctcgacttg cgtcacctcg
     2641 gcgagaaaaa actgcatgaa cgtctgccgt tcatctgcga actggcgaaa gcgtacgttg
     2701 gcgtcgatcc ggttaaagaa ccgattccgg tacgtccgac cgcacactac accatgggcg
     2761 gtatcgaaac cgatcagaac tgtgaaaccc gcattaaagg tctgttcgcc gtgggtgaat
     2821 gttcctctgt tggtctgcac ggtgcaaacc gtctgggctc caactccctg gcggaactgg
     2881 tggtcttcgg ccgtctggcc ggtgaacaag cgacagagcg tgcagcaact gccggtaatg
     2941 gcaacgaaga ggcaattgaa gcgcaggcag ctggcgttga acaacgtctg aaagatctgg
     3001 ttaaccagga tggcggcgaa aactgggcga agatccgcga cgaaatgggc ctagcaatgg
     3061 aagaaggttg cggtatctac cgtacgccgg aactgatgca gaaaaccatc gacaagctgg
     3121 cagagctgca ggaacgcttc aagcgcgtgc gcatcaccga cacctccagc gtgttcaaca
     3181 ccgacctgct ctacaccatt gaactgggcc acggtctgaa cgttgctgaa tgtatggcgc
     3241 actccgcaat ggcacgtaaa gagtcccgcg gcgcacacca gcgtctggac gaaggttgca
     3301 ccgagcgtga cgacgtcaac ttcctcaaac acaccctcgc cttccgcgat gctgatggca
     3361 cgactcgcct ggagtacagc gacgtgaaga ttactacgct gccgccagct aaacgcgttt
     3421 acggtggcga agcggatgca gccgataagg cggaagcagc caataagaag gagaaggcga
     3481 atggctgaga tgaaaaacct gaaaattgag gtggtgcgct ataacccgga agtcgatacc
     3541 gcaccgcata gcgcattcta tgaagtgcct tatgacgcaa ctacctcatt actggatgcg
     3601 ctgggctaca tcaaagacaa cctggcaccg gacctgagtt accgctggtc ctgccgtatg
     3661 gcgatttgtg gttcctgcgg catgatggtt aacaacgtgc caaaactggc atgtaaaacc
     3721 ttcctgcgtg attacaccga cggtatgaag gttgaagcgt tagctaactt cccgattgaa
     3781 cgcgatctgg tggtcgatat gacccacttc atcgaaagtc tggaagcgat caaaccgtac
     3841 atcatcggca actcccgcac cgcggatcag ggtactaaca tccagacccc ggcgcagatg
     3901 gcaaagtatc accagttctc cggttgcatc aactgtggtc tgtgctacgc cgcgtgcccg
     3961 cagtttggcc tgaacccaga gttcatcggt ccggctgcca ttacgctggc gcatcgttat
     4021 aacgaagata gccgcgacca cggtaagaag gagcgtatgg cgcagttgaa cagccagaac
     4081 ggcgtatgga gctgtacttt cgtgggctat tgctccgaag tctgcccgaa acacgtcgat
     4141 ccggctgcgg ccattcagca gggcaaagta gaaagttcga aagactttct tatcgcgacc
     4201 ctgaaaccac gctaaggagt gcaacatgac gactaaacgt aaaccgtatg tacggccaat
     4261 gacgtccacc tggtggaaaa aattgccgtt ttatcgcttt tacatgctgc gcgaaggcac
     4321 ggcggttccg gctgtgtggt tcagcattga actgattttc gggctgtttg ccctgaaaaa
     4381 tggcccggaa gcctgggcgg gattcgtcga ctttttacaa aacccggtta tcgtgatcat
     4441 taacctgatc actctggcgg cagctctgct gcacaccaaa acctggtttg aactggcacc
     4501 gaaagcggcc aatatcattg taaaagacga aaaaatggga ccagagccaa ttatcaaaag
     4561 tctctgggcg gtaactgtgg ttgccaccat cgtaatcctg tttgttgccc tgtactggta
     4621 aggagcctga gatgattaat ccaaatccaa agcattctga cgaaccggta ttctggggcc
     4681 tcttcggggc cggtggtatg tggagcgcaa ttattgcgcc ggtgatgatc ctgctggtgg
     4741 gtattctgct gccactgggg ctgtttccgg gtgatgcgct gagctacgag cgcgttctgg
     4801 cgttcgcgca gagcttcatt ggtcgcgtat tcctgttcct gatgatcgtt ctgccgctgt
     4861 ggtgtggttt acaccgtatg caccacgcga tgcacgatct gaaaattcac gtgcctgcgg
     4921 gcaaatgggt tttctacggt ctggctgcta tcctgacagt tgtcacgctg attggtatcg
     4981 ttacaatcta acgtatcgcc aatgtaaatc cggcccgcct atggcgggcc gttttgtatg
     5041 gaaaccagac cttatgttca aaacgacgct ctgcgcctta ttaattaccg cctcttgctc
     5101 cacatttgct gcccctcaac aaatcaacga tattgtgcat cgcacaatta ccccgcttat
     5161 agagcaacaa aagatccccg gtatggcggt ggcggtaatt tatcagggta aaccttatta
     5221 ctttacctgg ggctatgcgg acatcgccaa aaagcagccc gtcacacagc aaacgttgtt
     5281 tgagttaggt tcggtcagca aaacatttac gggcgtgctt ggtggcgacg ctattgctcg
     5341 aggggaaatc aagttaagcg atcccgcaac aaaatactgg cctgaactta ccgctaaaca
     5401 gtggaatggg atcacactat tacatcttgc gacctacacc gctggcggcc tgccattgca
     5461 gatgccggat gaagtgaaat cctcaagcga cttgctgcgc ttctatcaaa actggcagcc
     5521 tgcatgggct ccaggaacac aacgtctgta tgccaactcc agtatcggtt tgttcggcgc
     5581 actggctgtg aagccgtctg gtttgagttt tgagcaggcg atgcaaactc gtgtcttcca
     5641 gccactcaaa ctcaaccata cgtggattaa tgtaccgccc gcagaagaaa agaattacgc
     5701 ctggggatat cgcgaaggca aggcagttca tgtttcgcca ggggcgttag atgctgaagc
     5761 ttatggtgtg aagtcgacca ttgaagatat ggcccgctgg gtgcaaagca atttaacccc
     5821 ccttgatatc aatgagaaaa cgcttcaaca agggatacaa ctggcacaat ctcgctactg
     5881 gcaaatcggc gatatgtatc agggcctggg ctgggaaatg ctggactggc cggtcaatcc
     5941 tgacagcatc attaacggca gtgacaataa aattgcactg gcagcacgcc cggtaaaagc
     6001 gattaagccc ccaactcctg cagtacgcgc atcatgggta cataaaacgg gggcgaccgg
     6061 cggatttggt agctatgtcg cgtttattcc agaaaaagag ctgggtatcg tgatgctggc
     6121 taacaaaaac tatcccaatc cagcgagagt cgccgccgcc tgtcagattc tcaacgctct
     6181 acagtaaaat ttcatcgggt ccgaattttc ggaccttttc tgcgcttttc cttgctgtca
     6241 tctacactta gaaaaaaacc agtaaggaaa catttatgcg cctgctccct ctcgttgccg
     6301 cagcgacagc tgcatttctg gtcgttgcct gcagttctcc tacgccgccg cgtggcgtga
     6361 cagtagtgaa taatttcgac gctaaacgct atctcggtac ctggtatgag attgcccgtt
     6421 ttgatcaccg ttttgaacgt ggactggaaa aagtcaccgc aacatacagt ctgcgtgatg
     6481 gcggcggcct gaatgtcatc aataaaggct ataaccctga cagagaaatg tggcagcaga
     6541 gtgaagggaa agcgtacttt accggcgcac caacacgcgc tgcgctgaaa gtgtcattct
     6601 ttggtccttt ctatggcggt tataacgtca ttgcacttga tcgggaatac cgccatgcgc
     6661 tggtttgcgg cccggaccgc gactacctgt ggatactctc ccgcacgcca accatttctg
     6721 acgaagtgaa acaggagatg ctggcagtcg cgacccggga agggtttgat gtcagtaagt
     6781 ttatttgggt acagcagccc ggtagttagt gagtgctgag tttcagacca ataatcccca
     6841 atacgattaa cgccagactc gccaggcgca tcgggttagc ggactcaccg agcagcacaa
     6901 tgccggtgat agccgcgccg actgcgccaa tacccgtcca cacggcataa gccgtcccta
     6961 ctggtaacga tttcatcgcc caggcaagta gcgccatact gacaatcatc gccgtcacgg
     7021 taataacact cggcgtcaaa cgactaaagc cgtgggtata tttcaggcca acggcccata
     7081 ccacttccag cagaccagca ataactaaga taatccagga catatcaggc tccggagaat
     7141 tggggccgtc cccggtgaaa agacgcgttt gcaggtcgtc ctgcaaagct gatggttgaa
     7201 cggatatttt gccaggtggc aggggaattt caactattac cttagtgact atcgcagaaa
     7261 aaacaaacgg cacgacacag ctgtcgtacc gttattgctt attgctattg ctgcgctttc
     7321 gttgctgcgc cagaaatcgc gttaccgcca tcagaaatgt cttcaccaac gccacgcgtg
     7381 gtgttgcagg cagttaatac tgttgaaagc accagaacag aaaagatcgc tgcaattgtc
     7441 ttcttcacca taacgtcttc cttttaggta atgttattta tgtttgccta tagcaaatta
     7501 ataatagaca acatcgccaa aaatgacgga aatctgatga tttttcggaa gagaagaaaa
     7561 attagctggc agcgcgagag atggagttgc cgagatgttt gatgtcttcg ccgaaaccgc
     7621 gagcggtgtt acagcccgtg agcagcgtac tagcaagcaa aacaagaacg ataaggcgtt
     7681 tcatcatctc tgacctgaat aagtgatggt gcagcctgca ggccgcacca caaccgcatt
     7741 acttcacgcg agagacgtat tcaccagagc gggtatccac tttgatgact tcgccgattt
     7801 gtacgaacag cggaacctta accacagcgc cagtagacag ggtagccggt ttgccgccag
     7861 tacctgcggt atcacctttc aggcccggat cggtatcaac gatttccagt tcaacgaagt
     7921 tcggcggagt aacggagatc ggctgaccat tccacagagt tacgatacac tctgcctgat
     7981 ccagcagcca tttagcgtta tcgccaattg cttttgcatc agcagacagc tgctcgaaag
     8041 tttcgttgtt catgaagtgc cagaactcac cgtcgttgta caggtaagtc aggttcatat
     8101 cgacaacatc agcgccttca gcggaatcag tagatttgaa ggttttttct acgcgagtac
     8161 cggtcagcag acgacgcagt ttaacgcgag caaatgcctg gcctttaccc ggttttacga
     8221 attcactcgc ttcaaccgcg taaggttcgc cgtctaacat gattttaaga ccagcacgaa
     8281 aatcgttgct atagtacgtt gccataaggc cctctgaaat ttgttaattg gtagctaagc
     8341 cacaaaatgg cacatattgt aaccctaaat accccatcca gagaagattg gttaacgcaa
     8401 cttgccgatg ttgtgaccga tcctgatgaa cttctgcgtc ttttgaatat agacgcggac
     8461 gaaaaactgt tggccggacg cagcgccaaa aagctgtttg ccctgcgtgt gccccgctca
     8521 tttatcgatc gcatggagaa aggcaatccg gacgatcctc ttttgcgtca ggtacttacc
     8581 tcgcaagatg agtttgtcgt cgcgtccgga ttctccaccg acccactgga agaacagcac
     8641 agcgtagtgc ctggtttgtt gcataaatac cacaaccggg cgcttttgct ggtcaaaggc
     8701 ggctgcgcgg taaattgccg ctattgcttc cgtcgccact tcccctatgc cgaaaatcag
     8761 ggcaacaagc gtaactggca gactgcactt gagtatgttg ctgcgcatcc ggaactggac
     8821 gagatgattt tctccggcgg cgatccgctg atggcgaaag atcacgagct ggactggttg
     8881 ctcacacaac tggaagccat cccgcatatc aaacgtctgc ggattcacag ccgtctgccg
     8941 attgtgatcc cggcacgcat cacagatgcg ctggttgaac gcttttcaca ttctacgctg
     9001 caaatcctgc tggtgaatca catcaaccat gccaatgaga tagatgaaac attccgtcag
     9061 gcgatggcta agttgcgccg ggtaggcgtt actttgctga accagagcgt tctgttacgt
     9121 gatgtgaacg ataacgcaca aacgctggca aacctgagta atgcgttgtt cgatgccggc
     9181 gtgatgccgt attacctgca tgtgctcgat aaagtacagg gcgcggcgca ttttatggtg
     9241 agtgatgacg aagcacggca gattatgcgt gagttgctga cattggtgtc gggatatctg
     9301 gtgccgaaac tggcgcgaga aattggcggc gaacccagca aaacgccgct ggatctccag
     9361 ctacgccagc agttactgat taaacaggga agttaaacat taaaattgcc tgatgcgcta
     9421 cgcttatcag gcctacatcg tgcattgaaa ttgaatggat ttgcaatgaa ctgtaggccg
     9481 gataaggcgt ttacgccgca tccggcaaga gcaacaaacg caagtacagc aacctgtcat
     9541 taaactgaga aatttaatct ttgcccgttg cataaccttt aattattcat atgcattgct
     9601 gttgttactt tttatatagc taacaccaat aattaacctt tcttttctgt ttatatagag
     9661 tgagcacggc tatttatgtt attttaacaa ctattactac caagcccatt tatctggctt
     9721 ataaattaaa attaattatt taattgagaa atggttaggg agaacctaca tggccataag
     9781 catcaagggt gttaataccg gtgttattcg caagagtaat aatttcattg cactggcgct
     9841 gaaaattaaa gaacctcgca ataaagaatc gttgttcttt atgtctgtca tggaactgcg
     9901 cgacctgctg attgcgctgg aaagtcgtct gcatcaaaag cataaactgg atgctgctgc
     9961 acgccttcag tatgagcaag ctcgcgataa agtcattaag aaaatggcag aaaacatccc
    10021 agaaattctg gttgatgagc ttaaaaatgc cgatattaat cgtcgggtta acacgctgga
    10081 acttaccgat aatcaaggcg aaaatcttac cttcgtatta acgctacatg acggtagcaa
    10141 atgtgagtta gtcgtcaatg agttgcagat tgaaatgcta gcgcgagcaa tcattcatgc
    10201 aattaataat gcggaaatgc gtgaactggc attacgtatt acctcactgt tagatttcct
    10261 gccgttatat gacgttgact gccaggaaaa tggcaatctg gaatatgaca cctattccca
    10321 accggaatgg aaacataact tgttcgacca ttatctggcg gtgctttacc gctttaaaga
    10381 tgaaagtggc aaagaacaat ttagcggcgc agtggtgaaa acgcgtgaag caacgccggg
    10441 taaagaagta gaggcgatca ctcgccgaat gcttgatttc agcccacgac tgaaaaaact
    10501 cgcgggtgtg ccatgtcagg tctatgttcg caccgtagcg gcgaataacg cccaaccgct
    10561 aacccaggat caatgcttac gcgcgctgca tcacttacgt gttcaatcca ccagcaaaac
    10621 tgcaccacag gcgaaataat ctcatctttg ctaatgcgag gctggagcca tccagcctga
    10681 aatgactgat aacgtgatcg ttggtcatgc cggatgcggc gtaaacgcct tatccggcct
    10741 acaaattctc aagcattcaa tcagttgcaa tgcctgctgt aggcctgata agcgaagcgc
    10801 atcaggcaat aatacgtttg tcacccagcc tctggatcac atcagttcgg gcacttataa
    10861 acctgaccga taatctggct atccgtcggg acaaaactgg acaacattcc ctgcgacggg
    10921 ctgctgatgc cataaatcac gttaccgccc attgcagccg cctggttgcg cagatcgttt
    10981 gctgcgccgc gcatagaacc gccctcttct ccgtgttgcc cggaaagcca gttgctttgc
    11041 ttacctgtcg cagtaccaat cagctggcac tctgcgcctg gctgctcgtc cacaatgcgt
    11101 acactctgac cggcagcact caattcgttg ctggagctac aacccgccat cagtagcgcg
    11161 gcaccgacaa tccctgctaa gtattttacg tgcatgttat tccccataat caatgagctg
    11221 gacgccactc gcgtcgtccg tgtctgaatc ttatactaga aagatgacca aaagaaaaac
    11281 ccccagacat ttctgcccgg gggtttgttt atttctgcga ggtgcagggc aattacatca
    11341 tgccgcccat gccacccatg ccgcccatac cgccagcagc gcctaagtca gctgcatcgt
    11401 ttttcggcag gtcggtaacc atgcactcgg tggtgatcat caggccagcc acagaagccg
    11461 cgtactgcag agcagaacgg gttactttgg ttggatccag gatacccatg tcgatcatgt
    11521 tgccgtattc ttcggttgct gcgttgtaac cgtagttgcc gtcgccgcct ttaacagtgt
    11581 tagcaacaac agacggttct tcgccgcagt tcaatacgat ctgacgcagc ggagcttcca
    11641 ttgcacgcag tgcaactttg atacccacgt tctggtcttc gttctgacca cgcaggtcag
    11701 ccagtttaga cgctacgcgg atcagcgcaa caccaccacc agcaaccacg ccttcttcta
    11761 ccgcagcacg ggtcgcgtgc agggcatctt caacgcgtgc ttttttctct ttcatttcaa
    11821 cttcggtagc agcacctact ttgataactg caacgccgcc tgccagtttc gctacgcgct
    11881 cctgcagttt ttcacggtcg tagtcagaag ttgcttcttc aatctgctga cggatctgag
    11941 caacacggcc ctggattgca gcttcttcac ccacgccatc aatgatggtg gtggtgtctt
    12001 tgttgatcac aacacgttta gcctgaccca ggtcttccag ggttgctttt tccagctcca
    12061 taccgatctc ttcagagatt acggtaccgc cagtcagggt tgcgatatcc tgcagcatag
    12121 ctttacggcg atcgccgaag cccggagctt taaccgcagc aactttcacg atgccacgca
    12181 tggtgttaac aaccagagtt gccagcgctt cgccttcaac atcttcagcg atgatcagca
    12241 gcggtttacc tgctttagca acggcttcca gaaccggcag catttcgcgg atgttggaga
    12301 ttttcttgtc agccagcagg atgaacgggc tttccagttc tactgcgcca gtttccggct
    12361 tgttgatgaa gtaaggagac aggtagccac ggtcgaactg cataccttca accacgtcca
    12421 gttcgtcctg cagaccggta ccgtcttcaa cggtgataac gccttcttta ccgactttgt
    12481 ccatcgcttc agcgatcagt ttacctacgg tttcgtcgga gttagcggag atggtaccaa
    12541 cctgagcaat cgctttagag tcagagcatg gtacggacag cgctttcagt tcttcaactg
    12601 cagcggtaac agctttgtcg ataccacgtt tcaggtccat cgggttcatg cccgcagcaa
    12661 ctgctttcag accctcagtg atgatagcct gagccagtac ggttgcagtg gtggtaccgt
    12721 cgcctgcagc gtcgttcgct ttagaggcaa cttctttcac catctgcgca cccatatttt
    12781 cgaacttgtc ttccagttcg atttcacgag caacggaaac accatctttg gtgatggtcg
    12841 gtgcaccgaa agatttatcc agaactacgt tacggccttt cggaccgagg gtaactttca
    12901 ctgcatctgc cagtacgttt acgccgcgca gcattttcac acgagcgtcg ttaccgaatt
    12961 ttacgtcttt agctgccatt atctttattc cttaaattcg tatgttcagt gtcgtgcgag
    13021 gattacgctt caacaattgc cagaatgtcg ctttcggaca tgatcaacac ttcttcattg
    13081 tcgatcttct cagatttcac accgtagcca tcgttgaaaa taacgatgtc gccaactttc
    13141 acatccagcg gcttcacttc gccattttca aggatacggc cattgccgac agccagcact
    13201 tcgccgcggg tggatttagc cgctgcagag ccggtcagaa cgatgccgcc agcagattta
    13261 gtttcaactt ctttacgctt gacgatcacg cgatcatgca atggacgaat attcattgat
    13321 aactctcctt tgagaaagtc cgtatctgtt atgggtgacg ccggagctta cgtggtttcc
    13381 cggctggtga ccagagaaat ggggatgagg attcgcccct tcaaggggga aaaagaaaaa
    13441 aaattctgat cagcacaaaa tcgggtgaaa accctgattc acctcacatt tcatcgcaat
    13501 ttcttcatcg ccgtcataag cgaatctgat tgtgctacca tcgaaaatct acgcagttgc
    13561 ccaaaatttg ggcgcaatcg gatatcaacc catgagtgga ctcaaacaag aactggggct
    13621 ggcccagggc attggcctgc tatcgacgtc attattaggc accggcgtgt ttgccgttcc
    13681 tgcgttagct gcacaggtag caggcaataa cagcctgtgg gcgtggcccg ttttgattat
    13741 cttagtgttc ccgattgcga ttgtgtttgc gattctgggt cgccactatc ccagcgcagg
    13801 cggtgtcgcg cacttcgtcg gtatggcgtt tggttcgcgg cttgagcgag tcaccggctg
    13861 gttgttttta tcggtcattc ccgtgggttt gccagccgcg ctacaaattg ccgccgggtt
    13921 cggccaggca atgtttggct ggcatagctg gcaactgttg ttggcagaac tcggtacgct
    13981 ggcgctggtg tggtatatcg gtactcgcgg tgccagttcc agtgctaatc tacaaaccgt
    14041 tattgccgga cttatcgtcg cgctgattgt cgctatctgg tgggcgggcg atatcaaacc
    14101 tgcgaatatc cccttcccgg cacctggtaa tatcgaactt accgggttat ttgctgcgtt
    14161 atcagtgatg ttctggtgtt ttgtcggtct ggaagcattt gcccatcttg cctcggaatt
    14221 taaaaatcca gagcgtgatt ttcctcgcgc attgatgatt ggtctgctgc tggcaggatt
    14281 agtctactgg ggctgtacgg tagtcgtctt acacttcgac gcctatggtg aaaaaatggc
    14341 ggcggcagca tcgcttccaa aaattgtagt gcaactgttc ggtgtaggag cgttatggat
    14401 tgcctgcgtg attggctatc tggcctgctt tgccagtctc aacatttata tacagagctt
    14461 cgcccgcctg gtatggtcgc aggcgcaaca taatcctgac cactacctgg cacgcctctc
    14521 ttctcgccat atcccgaata atgccctcaa tgcggtgctc ggctgctgtg tggtgagcac
    14581 tttggtgatt catgctttag agatcaatct ggacgctctt attatttatg ccaatggcat
    14641 ctttattatg atttatctgt tatgcatgct ggcaggctgt aaattattgc aaggacgtta
    14701 tcgactactg gcggtggttg gcgggctgtt atgcgttctg ttactggcaa tggtcggctg
    14761 gaaaagtctc tatgcgctga tcgtgctggc gggattatgg ctgttgctgc caaaacgaaa
    14821 aacgccggaa aatggcataa ccacataatc cggcgtttcg acattaatcc tggcgatcgt
    14881 ctttatgatc aaggcggtcg cgctcatcat cctttcgctg gtactcacca tcaaaagtat
    14941 taccgccacc ggtcccggcg ctaaaaccgc cgcctggcat acgagaaaag cgcaaatgcg
    15001 gcatcaactt cactgtcaga tgcttttgca ccggcggtaa taaaagcaga agaccgagga
    15061 agtcggtgaa aaagcccggt aataaaagca gcaaaccggc aatgatcagc gaaacacttt
    15121 taatcatctc cgccgctggg ttttcacccg ccgccatttt ttgctgcatc agcacgaaat
    15181 tcttaaagcc ctggttacgt accagtgaca tcccgataac tgacgtgaat ataaccagca
    15241 cgagggtcag caataccccc aatacatggg caacctgaat aaagattgaa atctcaatat
    15301 agacataaag gaaaatggca ataaaaggta accagcgcaa aggtttctcc tgtaatagca
    15361 gccggtaaaa cccggctacc tgaatgggtt gcgaatcgcg ttcagcttat attgtggtca
    15421 ttagcaaaat ttcaagatgt ttgcgcaact atttttggta gtaatcccaa agcggtgatc
    15481 tatttcacaa attaataatt aaggggtaaa aaccgacact taaagtgatc cagattacgg
    15541 tagaaatcct caagcagcat atgatctcgg gtattcggtc gatgcagggg ataatcgtcg
    15601 gtcgaaaaac attcgaaacc acatatattc tgtgtgttta aagcaaatca ttggcagctt
    15661 gaaaaagaag gttcacatgt caaacaacat tcgtatcgaa gaagatctgt tgggtaccag
    15721 ggaagttcca gctgatgcct actatggtgt tcacactctg agagcgattg aaaacttcta
    15781 tatcagcaac aacaaaatca gtgatattcc tgaatttgtt cgcggtatgg taatggttaa
    15841 aaaagccgca gctatggcaa acaaagagct gcaaaccatt cctaaaagtg tagcgaatgc
    15901 catcattgcc gcatgtgatg aagtcctgaa caacggaaaa tgcatggatc agttcccggt
    15961 agacgtctac cagggcggcg caggtacttc cgtaaacatg aacaccaacg aagtgctggc
    16021 caatatcggt ctggaactga tgggtcacca gaaaggtgaa tatcagtacc tgaacccgaa
    16081 cgaccatgtt aacaaatgtc agtccactaa cgacgcctac ccgaccggtt tccgtatcgc
    16141 agtttactct tccctgatta agctggtaga tgcgattaac caactgcgtg aaggctttga
    16201 acgtaaagct gtcgaattcc aggacatcct gaaaatgggt cgtacccagc tgcaggacgc
    16261 agtaccgatg accctcggtc aggaattccg cgctttcagc atcctgctga aagaagaagt
    16321 gaaaaatatc caacgtaccg ctgaactgct gctggaagtt aaccttggcg caacagcaat
    16381 cggtactggt ctgaacacgc cgaaagagta ctctccgctg gcagtgaaaa aactggctga
    16441 agtcactggc ttcccatgcg taccggctga agacctgatc gaagcgacct ctgactgcgg
    16501 cgcttatgtt atggttcacg gcgcgctgaa acgcctggct gtgaagatgt ccaaaatctg
    16561 taacgacctg cgcttgctct cttctggccc acgtgccggc ctgaacgaga tcaacctgcc
    16621 agaactgcag gcgggctctt ccatcatgcc agctaaagta aacccggttg ttccggaagt
    16681 ggttaaccag gtatgcttca aagtcatcgg taacgacacc actgttacca tggcagcaga
    16741 agcaggtcag ctgcagttga acgttatgga gccggtcatt ggccaggcca tgttcgaatc
    16801 cgttcacatt ctgaccaacg cttgctacaa cctgctggaa aaatgcatta acggcatcac
    16861 tgctaacaaa gaagtgtgcg aaggttacgt ttacaactct atcggtatcg ttacttacct
    16921 gaacccgttc atcggtcacc acaacggtga catcgtgggt aaaatctgtg ccgaaaccgg
    16981 taagagtgta cgtgaagtcg ttctggaacg cggtctgttg actgaagcgg aacttgacga
    17041 tattttctcc gtacagaatc tgatgcaccc ggcttacaaa gcaaaacgct atactgatga
    17101 aagcgaacag taatcgtaca gggtagtaca aataaagaag gcacgtcaga tgacgtgcct
    17161 tttttcttgt gagcagtaac ttaaaaacaa caatctaata tcaacttgtt aaaaaacaag
    17221 gaaggctaat atgctagttg tagaactcat catagttttg ctggcgatct tcttgggcgc
    17281 cagattgggg ggaataggta ttggttttgc aggcggattg ggggtgctgg ttcttgccgc
    17341 tattggcgtt aaacccggta acatcccgtt cgatgtcatt tccattatca tggcggttat
    17401 cgccgctatt tctgccatgc aggttgctgg cggtctggac tatctggttc atcagacaga
    17461 aaagctgctg cgccgtaacc cgaaatacat cacgatcctc gcacctatcg tgacctattt
    17521 cctgacaatc tttgctggta ctggcaacat ctctctggcg acactgccag ttatcgctga
    17581 agttgcgaag gaacaaggcg ttaaaccttg ccgtccgctc tctactgcag tggtatccgc
    17641 gcagattgcg atcaccgcat cgccaatctc agcggcagtg gtttacatgt cttccgtgat
    17701 ggaaggtcat ggcatcagct acctccatct gctctccgtg gtcatcccgt ccaccctgct
    17761 ggcggttctg gtgatgtcct ttctggtcac tatgctgttc aactccaaac tctctgacga
    17821 tccgatttat cgcaagcgtc tggaagaggg cctggttgaa ctgcgcggtg aaaagcagat
    17881 tgaaatcaaa tccggtgcaa aaacgtccgt ctggctgttc ctgctgggcg tagttggcgt
    17941 ggttatctat gcaatcatca acagcccaag catgggtctg gttgaaaaac cgctgatgaa
    18001 caccaccaac gcaatcctga tcatcatgct cagcgttgca actctgacca ccgttatctg
    18061 taaagtcgat accgacaaca tcctcaactc cagcaccttc aaagcaggta tgagcgcctg
    18121 tatttgtatc ctgggtgttg cgtggctggg cgatactttc gtttccaaca acatcgactg
    18181 gatcaaagat accgctggtg aagtgattca gggtcatccg tggctgctgg ccgtcatctt
    18241 cttctttgct tctgctctgc tgtactctca ggctgcaacc gcaaaagcac tgatgccgat
    18301 ggctctggca ctgaacgttt caccgctgac cgctgttgct tctttcgctg cggtgtctgg
    18361 tctgttcatt ctgccgacct acccgacgct ggttgctgcg gtacagatgg atgacacggg
    18421 tactacccgt atcggtaaat tcgtcttcaa ccatccgttc ttcatcccgg gtactctggg
    18481 tgttgccctg gccgtttgct tcggcttcgt gctgggtagc ttcatgctgt aatgatcaat
    18541 cgcggggcgt tcacgccccg ctttctttcc cgccgactaa catccttccc ccgtacgttg
    18601 tatagtgacc tctctcttgc ggttccatct gttcttgcga ggtgtttatg cttgatgaaa
    18661 aaagttcgaa taccgcgtct gtcgtggtgc tatgtacggc accagatgaa gcgacagccc
    18721 aggatttagc tgccaaagtg ctggcggaaa aactggcggc ctgcgcgacc ttgagccccg
    18781 gcgctacctc tctctattac tgggaaggta agctggagca agaatacgaa gtgcagatga
    18841 ttttaaaaac taccgtatct caccagcagg cactgctgga atgcctgaag tctcatcatc
    18901 catatcaaac cccggaactt ctggttttac ctgttacaca cggagacaca gattacctct
    18961 catggctcaa cgcatcttta cgctgatcct gctactttgc agcacttccg tttttgccgg
    19021 attattcgac gcgccgggac gttcacaatt tgtccccgcg gatcaagcct ttacttttga
    19081 ttttcagcaa aaccaacatg accttaatct gacctggcag atcaaagacg gttactacct
    19141 ctaccgtaaa cagatccgca ttacgccgga acacgcgaaa attgccgacg tgcagctgcc
    19201 gcaaggcgtc tggcatgaag atgagtttta cggcaaaagc gagatttacc gcgatcggct
    19261 gacgcttccc gtaaccatca accaggcgag tgcgggagcg acgttaactg tcacctacca
    19321 gggctgtgct gatgccggtt tctgttatcc gccagaaacc aaaaccgttc cgttaagcga
    19381 agtggtcgcc aacaacgcag cgtcacagcc tgtgtctgtt tcgcagcaag agcagcacac
    19441 cgcgcaattg cccttttccg cgctctgggc gttgttgatc ggtattggta tcgcctttac
    19501 gccatgcgtg ctgccaatgt acccactgat ttctggcatc gtgctgggtg gtaaacagcg
    19561 gctctccact gccagagcat tgttgctgac ctttatttat gtgcagggga tggcactgac
    19621 ttacacggcg ctgggtctgg tagttgccgc cgcagggtta cagttccagg cggcgctaca
    19681 gcacccatac gtgctcattg gcctcgccat cgtctttacc ttgctggcga tgtcaatgtt
    19741 tggcttgttt actctacaac tcccctcttc gctgcaaaca cgtctcacgt tgatgagcaa
    19801 tcgccaacag ggcggctcac ctggcggtgt gtttgttatg ggggcgattg ccggacttat
    19861 ctgttcacca tgcaccaccg caccgcttag cgcgattctg ctgtatatcg cccaaagcgg
    19921 gaacatgtgg ctgggcggcg gcacgcttta tctctatgcg ttgggcatgg gcctgccgct
    19981 gatgctaatt accgtctttg gtaaccgctt gctgccgaaa agcggcccgt ggatggaaca
    20041 agtcaaaacc gcgtttggtt ttgtgatcct cgcactgccg gtcttcctgc tggagcgagt
    20101 gattggtgat gtatggggat tacgcttgtg gtcggcgctg ggtgtcgcat tctttggctg
    20161 ggcctttatc accagcctac aggctaaacg cggctggatg cgcgtggtgc aaataatcct
    20221 gctggcagcg gcattggtta gcgtgcgccc acttcaggat tgggcatttg gtgcgacgca
    20281 taccgcgcaa actcagacgc atctcaactt tacacaaatc aaaacggtag atgagttaaa
    20341 tcaggcgctc gttgaagcca aaggcaaacc ggtgatgtta gatctttatg ccgactggtg
    20401 cgtcgcctgt aaagagtttg agaaatacac cttcagcgac ccgcaggtgc aaaaagcgtt
    20461 agcagacacg gtcttacttc aggccaacat cacggccaac gacgcacaag atgtggcgct
    20521 gttaaagcat cttaatgtcc ttggcctacc gacaattctc ttttttgacg gacaaggcca
    20581 ggagcatcca caagcacgcg tcacgggctt tatggatgct gaaaccttca gcgcacattt
    20641 gcgcgatcgc caaccgtgaa cgacacttgc agcgggaaag acggaggaaa atagcgtgca
    20701 acgtgaagat gtactgggag aagccctgaa attattagaa ttacaaggga ttgccaacac
    20761 cacgctggag atggttgctg aacgtgtgga ttatccactg gacgagctac gccgcttctg
    20821 gccagacaaa gaggcaatcc tctacgatgc gctgcgttat cttagccaac agatagatgt
    20881 ctggcgtcgt cagctgatgc tggacgaaac gcaaaccgcc gaacaaaagc tgctggcacg
    20941 ttatcaggcg ttatcggagt gcgttaaaaa caaccgctat ccgggctgtc tatttatcgc
    21001 tgcctgtacg ttttatcccg atcctggcca ccctattcat caactggccg atcagcaaaa
    21061 aagcgcggcc tacgatttca cccacgaact gttaaccaca ctggaagttg acgatccggc
    21121 gatggtagca aagcagatgg aactggtgct ggaaggctgt ttaagccgaa tgctggtgaa
    21181 tcgtagccag gcggatgtcg acactgcaca tcggctggcg gaagatatcc tgcgcttcgc
    21241 ccgctgccgc cagggtggtg cattgacctg acagaaacac agaaaagaag cgatttgccg
    21301 caatcttaag cagttgaatc gcttttactg aaattaggtt gacgagatgt gcagattacg
    21361 gtttaatgcg ccccgttgcc cggatagctc agtcggtaga gcaggggatt gaaaatcccc
    21421 gtgtccttgg ttcgattccg agtccgggca ccaaattcat atcaacggac ctctacggag
    21481 gtccgttttt cgtttcagaa cgccacgatt taagcgttct gcctacaaat caattctacc
    21541 gaactcaacc agattccccc cacatcaacc ccattgtgtg ggtataattg cgggcatacc
    21601 ccagttcgac agaatttgta ccctctttaa cgcattcaga aggctgaact atggcactga
    21661 ctgacgcaaa aatccgggct gcaaagccca ctgacaaggc ttataaactc actgacgggg
    21721 ctggcatgtt cctgctggta catcctaatg gctcccgtta ctggcgtctc cgttatcgta
    21781 ttctgggtaa ggagaagact ctggcacttg gtgtgtatcc agaagtttct ctctccgaag
    21841 ctcgtacaaa acgggatgag gcccgaaaac tgatttcgga gggggttgac ccttgcgaac
    21901 agaaaagagc taaaaaagta gtccctgatt tacagctctc ttttgaacat attgcgcgac
    21961 gctggcatgc cagtaataaa caatgggcac aatcacacag cgataaagta ctcaaaagcc
    22021 tcgagactca cgttttcccc tttatcggca accgggatat cacaacactc aataccccgg
    22081 atctgcttat ccctgttcgt gctacagaag ctaaacaaat ttatgaaatc gccagtcgtc
    22141 tgcagcaaag aatatctgcc gtaatgcgtt atgccgtaca gtctggcatc atcagatata
    22201 atcctgctct ggatatggct ggcgcattga ctacggtaaa acgccagcat cgccccgctc
    22261 ttgatctttc tcgcctgcct gaacttttgt cgcgtattgg cagttacaaa gggcaacctg
    22321 tcacccagct tgccgttatg ctgaatttac tggtttttat tcgttccagt gaactcagat
    22381 acgcccgctg gtctgaaatt gatattgaca atgccatgtg gactattcca gccgaacgcg
    22441 aacccctgcc aggcgtaaaa ttctcacacc ggggctccaa gatgcgaaca ccacatcttg
    22501 tgccactcag caaacaggct gtagccatac tgacagaact acagacatgg gctggtgaaa
    22561 atggtctgat ctttacggga gcacatgacc cgcgtaaacc aatcagtgaa aatgtaatga
    22621 acgcatctca cacaattaaa cacggagcag tatgatggtt aaaagggtga aactg
//
LOCUS       DAJVUN010000056        22668 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.056, whole genome shotgun sequence.
ACCESSION   DAJVUN010000056 DAJVUN010000000
VERSION     DAJVUN010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22668
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.056"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..327
                     /locus_tag="OQQ76_001798"
     CDS             <1..327
                     /locus_tag="OQQ76_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310606.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HCS1968325.1"
                     /translation="LRLQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVLMLFMEMN
                     GAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWE
                     LVFSLR"
     gene            368..1111
                     /gene="cmoA"
                     /locus_tag="OQQ76_001799"
     CDS             368..1111
                     /gene="cmoA"
                     /locus_tag="OQQ76_001799"
                     /EC_number="2.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000019619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HCS1968326.1"
                     /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS
                     MISMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI
                     DAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL
                     VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL
                     HKAGFEHSELWFQCFNFGSLVALKAEDAV"
     gene            1108..2079
                     /gene="cmoB"
                     /locus_tag="OQQ76_001800"
     CDS             1108..2079
                     /gene="cmoB"
                     /locus_tag="OQQ76_001800"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HCS1968327.1"
                     /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN
                     AVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNID
                     TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ
                     FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN
                     EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRVVDVC
                     VTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP"
     gene            complement(2244..4673)
                     /gene="torZ"
                     /locus_tag="OQQ76_001801"
     CDS             complement(2244..4673)
                     /gene="torZ"
                     /locus_tag="OQQ76_001801"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310609.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine N-oxide reductase TorZ"
                     /protein_id="HCS1968328.1"
                     /translation="MTLTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRW
                     GAMNVEVKDGKIVSSTGALAKTIPNSLQSTAADQVHTTTRIQHPMVRKSYLDNPLQPT
                     KGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQR
                     YMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPL
                     NTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIDFFGDNATWIAPNMGTDVA
                     LMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLRGKSDNTPKSAAWAAEITGVPEAQ
                     IVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAVLGQIGTPGGGFGFSYHYS
                     NGGNPTRVGGVLPEMSAAIAGQASEAADDGGMRAIPVARIVDALENPGGKYQHNGKEQ
                     TYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTS
                     FERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDE
                     MAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYADFRADPVK
                     NALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLH
                     SQLNYAELRKKYAVADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIK
                     KGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYIEKYTGNAPK
                     LTAFDKPAVQA"
     gene            complement(4698..5798)
                     /locus_tag="OQQ76_001802"
     CDS             complement(4698..5798)
                     /locus_tag="OQQ76_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707761.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HCS1968329.1"
                     /translation="MRGKKRIGLLFLLIAVVVGGGGLLLAQKALHKTSDTAFCLSCHS
                     MSKPFEEYQGTVHFSNQKGIRAECADCHIPKSGMDYLFAKLKASKDIYHEFVSGKIDS
                     DDKFETHRQEMAETVWKELKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKGGET
                     CIDCHKGIAHFPPEIKMDDNAAHELESQAATSVTNGAHIYPFKTSRIGELATVNPGTD
                     LTVVDASGKQPIVLLQGYQMQGSENTLYLAAGQRLALATLSEEGIKALTLNGEWQADE
                     YGNQWRQASLQGALTDPGLADRKPLWQYAEKLDDTYCAGCHAPIAADHYTVNAWPSIA
                     KGMGARTSMSENELDILTRYFQYNAKDITEKQ"
     gene            complement(6186..6932)
                     /gene="cutC"
                     /locus_tag="OQQ76_001803"
     CDS             complement(6186..6932)
                     /gene="cutC"
                     /locus_tag="OQQ76_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HCS1968330.1"
                     /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK
                     SVRQWVTIPVHPIIRPRGGDFCYSDGEFAAILEDVLTVRELGFPGLVTGVLDVDGNVD
                     MPRMEKIMAAAGPLAVTFHRAFDMCANPLNTLSNLAELGIARVLTSGQKSDALQGLSK
                     IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS
                     DAHADEYSRYVVDGAAVAEMKGIIERHQAK"
     gene            complement(6946..7512)
                     /locus_tag="OQQ76_001804"
     CDS             complement(6946..7512)
                     /locus_tag="OQQ76_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707763.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1968331.1"
                     /translation="MANWQSIDELQDIASDLPRFTHALDELSRRLGLDITPLTADHIS
                     LRCHQNVTAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPG
                     EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEYERLPNP
                     TLAVTDGKTTIKFHPWSIEEIVASEQSA"
     gene            7728..9461
                     /gene="argS"
                     /locus_tag="OQQ76_001805"
     CDS             7728..9461
                     /gene="argS"
                     /locus_tag="OQQ76_001805"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HCS1968332.1"
                     /translation="MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM
                     MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS
                     DRLGVSTPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG
                     DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ
                     SGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG
                     LAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL
                     YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD
                     LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML
                     AFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREAQLAARLLQFEETLT
                     VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL
                     DTLGIETVERM"
     gene            9638..10126
                     /locus_tag="OQQ76_001806"
                     /pseudo
     CDS             9638..10126
                     /locus_tag="OQQ76_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416391.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
     gene            complement(10246..10638)
                     /gene="flhe"
                     /locus_tag="OQQ76_001807"
     CDS             complement(10246..10638)
                     /gene="flhe"
                     /locus_tag="OQQ76_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlhE"
                     /protein_id="HCS1968333.1"
                     /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS
                     TRQPASGLMTLVAWRYQLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL
                     RFIWEVPGGGRLIPPLKVQRNEVIVNYR"
     gene            complement(10638..12714)
                     /gene="flhA"
                     /locus_tag="OQQ76_001808"
                     /pseudo
     CDS             complement(10638..12714)
                     /gene="flhA"
                     /locus_tag="OQQ76_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416393.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
     gene            complement(12707..13810)
                     /gene="flhB"
                     /locus_tag="OQQ76_001809"
                     /pseudo
     CDS             complement(12707..13810)
                     /gene="flhB"
                     /locus_tag="OQQ76_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416394.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
     gene            complement(13893..14537)
                     /gene="cheZ"
                     /locus_tag="OQQ76_001810"
     CDS             complement(13893..14537)
                     /gene="cheZ"
                     /locus_tag="OQQ76_001810"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HCS1968334.1"
                     /translation="MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA
                     AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI
                     DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE
                     RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDLVDDLLDSLGF"
     gene            complement(14548..14937)
                     /gene="cheY"
                     /locus_tag="OQQ76_001811"
     CDS             complement(14548..14937)
                     /gene="cheY"
                     /locus_tag="OQQ76_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HCS1968335.1"
                     /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN
                     KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG
                     ASGYVVKPFTAATLEEKLNKIFDKLDM"
     gene            complement(14952..16001)
                     /gene="cheB"
                     /locus_tag="OQQ76_001812"
     CDS             complement(14952..16001)
                     /gene="cheB"
                     /locus_tag="OQQ76_001812"
                     /EC_number="3.1.1.61"
                     /EC_number="3.5.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate methylesterase/protein
                     glutamine deamidase"
                     /protein_id="HCS1968336.1"
                     /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL
                     IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI
                     DFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA
                     IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE
                     RVLPGHAYIAPGDRHMELARSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAV
                     GVILTGMGNDGAVGMLAMRQAGAWTLAQNEASCVVFGMPREAINMGGVCEVVDLSQVS
                     QQMLAKISAGQAIRI"
     gene            complement(16004..16864)
                     /gene="cheR"
                     /locus_tag="OQQ76_001813"
     CDS             complement(16004..16864)
                     /gene="cheR"
                     /locus_tag="OQQ76_001813"
                     /EC_number="2.1.1.80"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HCS1968337.1"
                     /translation="MTSSLPCGQTSLLLQMTERLALSDAHFRRISQLIYQRAGIVLAD
                     HKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHH
                     FPLLADHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL
                     EKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQY
                     TVPGPFDAIFCRNVMIYFDQNTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLR
                     GQTVYALSKD"
     gene            complement(16883..18484)
                     /gene="tap"
                     /locus_tag="OQQ76_001814"
     CDS             complement(16883..18484)
                     /gene="tap"
                     /locus_tag="OQQ76_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein IV"
                     /protein_id="HCS1968338.1"
                     /translation="MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVE
                     QSNQQRAALAQTRAIMLQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFK
                     SFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFD
                     VNFEAWQLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPL
                     AIIGSHFDSIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSHEMHIG
                     IAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQ
                     AGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF
                     AVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMTDIVSSVTRVND
                     IMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRV
                     AVFTLEEHEVARHESAQLQIAPVVS"
     gene            complement(18530..19948)
                     /locus_tag="OQQ76_001815"
     CDS             complement(18530..19948)
                     /locus_tag="OQQ76_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tar ligand binding domain-containing protein"
                     /protein_id="HCS1968339.1"
                     /translation="MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSN
                     QLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAAT
                     HYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNI
                     DGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASA
                     LEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSK
                     KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSVQAAKEI
                     KALIEDSVARVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIVQVAL
                     AVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSTFRLAASPLTNKPQTPSRPA
                     SEQPPAQPRLRIAEQDPNWETF"
     gene            complement(20093..20596)
                     /gene="cheW"
                     /locus_tag="OQQ76_001816"
                     /pseudo
     CDS             complement(20093..20596)
                     /gene="cheW"
                     /locus_tag="OQQ76_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310624.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
     gene            complement(20617..22581)
                     /gene="cheA"
                     /locus_tag="OQQ76_001817"
     CDS             complement(20617..22581)
                     /gene="cheA"
                     /locus_tag="OQQ76_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HCS1968340.1"
                     /translation="MSMDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIF
                     RAVHSIKGGAGTFGFSVLQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQL
                     DAYKQSQEPDAASFDYICQALRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPR
                     RIILSRLKAGEVDLLEEELGHLITLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEA
                     DQITFETVEVSPKISTPPVLKLAAEQAPTGRVEREKTTRSSESTSIRVAVEKVDQLIN
                     LVGELVITQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFS
                     RYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKR
                     LAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSENMSDDEV
                     AMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLT
                     LAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWK
                     VFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAAT
                     ILGDGSVALIVDVSALQAINREQRMANTAA"
BASE COUNT         5332 a         6217 c         5488 g         5631 t
ORIGIN      
        1 ttgcgtttgc agtaccgcgt tgcctatggt gacggtggtt ttagcgaact gcaaagcgct
       61 attcgcattc atggtaacgc ggtggaatat attcccatcg cgattgtgct gatgctgttt
      121 atggaaatga atggcgcaga aacctggatg gtgcatattt gcggcatcgt tttgcttgct
      181 ggtcgtctga tgcattatta cggttttcat caccgtctgt ttcgctggcg acgttccggc
      241 atgagcgcca cctggtgtgc gctgttgctg atggtgctgg cgaatctttg gtatatgccc
      301 tgggagttgg ttttctccct gcgttagcgc acaatacgcc actttctttt tcccggattt
      361 ttacgttatg tctcaccgcg acacgctatt ttctgcccct atcgccagac tgggcgactg
      421 gacctttgat gaacgggtag ctgaagtctt cccggatatg atccagcgtt ccgttcccgg
      481 ctattccaat attatttcca tgattagtat gctagccgag cgcttcgttc aacctggtac
      541 gcaggtttac gatctgggtt gttctctggg cgcggcgacg ctctcggtgc gtcgcaacat
      601 tcatcatgat aattgcaaaa ttattgccat cgacaactcc ccggcgatga ttgaacgctg
      661 ccgtcgtcat attgacgcct ataaagcccc tacgccagta gacgtcattg aaggtgatat
      721 tcgcgatatc gccattgaaa acgcatcgat ggtggtgctg aattttaccc tgcaattcct
      781 ggaaccttcc gagcgccagg cattactgga taaaatttat caaggactga acccgggcgg
      841 cgcgctggtg ctttcggaaa aattcagttt cgaagatgcc aaagttggtg aactgttgtt
      901 caacatgcac cacgacttta aacgtgccaa cggttacagc gaactggaga tcagccagaa
      961 gcgcagcatg ctggaaaacg tgatgctgac cgattccgtg gaaacccata aagcacgcct
     1021 gcataaagcc ggttttgagc atagcgagct gtggttccag tgctttaact ttggttcact
     1081 ggtggcatta aaagcagagg acgctgtatg atcgactttg gtaactttta ttctctgatt
     1141 gccaaaaatc atctttcaca ctggctcgaa acgctgcccg cgcagattgc taactggcag
     1201 cgcgagcagc agcacgggct gtttaagcag tggtccaacg cggtggaatt tctgcctgaa
     1261 attaaaccgt atcgtctgga tttattgcat agcgtaaccg ccgaaagcga agagccactg
     1321 agcaccgggc aaattaaacg cattgaaacg cttatgcgga acctgatgcc atggcgcaaa
     1381 gggccgttct cactgtatgg cgtcaacatc gataccgaat ggcgttccga ctggaaatgg
     1441 gatcgtgttc tgccccatct ttctgattta accggacgca ccattctgga tgtcggctgc
     1501 ggcagcggtt atcacatgtg gcgcatgatt ggcgcaggcg cgcacctcgc ggtggggatc
     1561 gaccctacgc aactgtttct gtgccagttt gaagcggtgc gtaaactact gggtaacgat
     1621 cagcgcgcac atttgttacc gttaggtatt gaacagcttc cggcactgaa agcctttgat
     1681 accgtctttt cgatgggcgt gctttaccat cgccgttcgc cgctggagca tctctggcag
     1741 ttgaaagatc aactggtgaa tgagggtgaa ctggtgctgg aaacgctggt tattgatggc
     1801 gatgagaaca cggtgctggt accaggcgat cgttacgcgc aaatgcgtaa tgtctatttc
     1861 atcccttccg cgctggcgct gaaaaactgg ctgaagaagt gtggttttgt agatatccgc
     1921 gttgtggatg tgtgcgttac cactactgaa gagcagcgac gcactgaatg gatggttacc
     1981 gaatctctgt ccgatttcct cgacccacat gatccgagta agacagttga aggttatcct
     2041 gcgcctaaac gcgcggtgct gattgcgcgc aagccgtaaa ggtctggtat tactgccgga
     2101 tgcagcgtga atgccttatc cggcctacaa acccttgcta attcaatcta ttgcagggac
     2161 tatgtaggcc tgataagcat agcgcatcag gcagttttac gtttgcataa cctcagcgcc
     2221 cgtttccggg cgctattcac ttcttacgcc tgaacagcag gcttatcaaa tgccgttaac
     2281 ttcggtgcgt tacccgtata tttttcgata tacaccagcg cagagttacc ggcacaggca
     2341 tttgccagct gcgagctggg gatatccgcc gttaacacgt tcgcactgcc gtttttacac
     2401 aagccatttt ccagatctgg ccatgcacct tcatgcacgc ataccacgcc ttttttgatc
     2461 ccgtcagtca ccaccgcgcc tgtcagaatc tgaccacgtt tgttccacac acgcaccaga
     2521 tcaccattcg caataccaaa gcgagcagca tcttcggtat gaatagtgat tggttcacga
     2581 tctgcaaccg catatttttt acgcagttcc gcatagttaa gctgactatg taaacggtgt
     2641 gccggatgtg cggtcagaag ctgcaactgc ttctcgtcgg cggtaccctt ccactcatca
     2701 ggcgcaagcc aggttgggtg tgccgggcaa tccttatagc caaatttttc cagcgttttg
     2761 gagtaaatct caattttgcc gcttggcgta cccagcgcat ttttcaccgg atcggcgcgg
     2821 aaatcagcat aacgaacgta ctgttcgttc ttctcgctgc ggcgcatttc gatcagttta
     2881 ttttgctgcc agaaggcatt aaacatcggc atagtcacgc gttgcgcacg ggcacctttc
     2941 tgagcggcat catagaaaaa tttcagccac gccatttcat ctttaccttc ggtatagatc
     3001 tcttttccgc caggtttcag taattccgca agatcggcaa acacatcaaa atcgtttcgc
     3061 gcttcaaatt gcggagcgac agcctgcttc atcggcacaa tatgctggtt gctgtaatca
     3121 ccggtcatcg tcaagtcatt gcgctcaaac gatgtggtga tcggtaatac gatatctgca
     3181 tgtttagcag ctgcggtcca gtagcattca gaaacgacga tcatctccgg tttctgccat
     3241 gctttaatca gacgattagt atcctggtga tgggtaaagt taccgccacc cgcccaccag
     3301 atcattttga tattcggata cgtttgctct ttaccgttat gctgatattt gccgccagga
     3361 ttttccagcg catcgacgat acgggcaaca ggaatcgccc tcattccgcc atcatcagcg
     3421 gcctcgctgg cctgtccggc aatcgccgca gacatttccg gcagcacgcc gccaacacgt
     3481 gtcgggttgc caccattgga gtaatgataa gagaaaccaa aaccgccgcc cggtgtacca
     3541 atctgcccta acaccgccgc cagcgtcacc agcatccagt gtttctgttc accatattgc
     3601 tggcgctgaa ttccccagcc tgccatcagc attgtgcgat tcgccgccat cagttcagcg
     3661 agtttgacta tctgcgcttc cggtacgcca gtaatttccg ccgcccaggc cgcgctcttc
     3721 ggcgtattat cgctcttacc tctcagatac tcttcaaact gcggataccc ggtagtgtat
     3781 ttttcaagga acactttatc gtgtttgcct tgtgtcatca gggtatgcgc aatccctaac
     3841 atcagtgcca cgtcggtgcc catattcggc gcgatccagg tggcattatc gccaaagaag
     3901 tcgatggttt cggagcggat aggatcaatg gcaatcactg gtttgccaga tttttttagc
     3961 tgatggaagt attccagccc ttgctcatcg gtactgctcc aggcaatttt taaggtattc
     4021 agcgggttca tcccccacag caccacaacc tggctgtttt ccagaatcag cggccaggag
     4081 gtctgctgtt catacacctc tacagaaccg accacatgcg gcatgatcac ctgtgccgcc
     4141 ccggttgaat aatcgccgct atgcccggaa taaccgcccg ccaggttcat ataacgttgc
     4201 agtaaggttt gcgctttatg caacacgcca gaagagcgcc agccgtatga tccggcaaaa
     4261 atagccgatg gtccgttagc tttgcgaatg cgatcgtgtt gctcatgaat cagttttaat
     4321 gcttgttccc agctcacctg tacataggta tcttcgccac gacctttcgt cggttgcagt
     4381 ggattatcga gatagctttt tctcaccatc ggatgctgaa tacgcgtcgt ggtgtgtacc
     4441 tgatccgccg ccgtagactg taaggaattc ggtatggttt tcgccagcgc gcctgttgaa
     4501 gaaacaatct tgccgtcctt cacttctacg ttcatcgctc cccaacgtcc cgcggtgagg
     4561 attttaccgc ccttctcttc tgcccatgcg gggagcggtg ctgccgatgt caccaccagc
     4621 gctccagcgg caataccgct gtgtttaata aattcacgtc ttgttaatgt cataacttcc
     4681 tccctgatca acgaggatca ctgtttctcg gtaatatctt tggcgttgta ctggaaatac
     4741 cgcgttaaaa tgtccagttc gttttcgctc atgctggttc gtgcccccat tcctttggca
     4801 atggacggcc acgcattgac ggtgtaatgg tcggcggcaa taggggcatg acaaccagcg
     4861 caataggtat cgtcaagttt ttcagcgtat tgccatagcg gtttacggtc cgctaatccg
     4921 ggatcggtaa gcgcaccctg taaagacgcc tgacgccatt gattgccgta ttcgtcagcc
     4981 tgccattccc cgtttagcgt gagcgccttg ataccttctt cacttaatgt ggctagcgcc
     5041 agccgttgac ctgccgccag gtagagcgtg ttttcactgc cctgcatttg ataaccctgc
     5101 aacagaacga tcggctgttt gccactggca tcaacgacgg tgagatcggt accaggattc
     5161 acggtagcca gctcgcctat gcgagaagtt ttgaaaggat aaatatgtgc gccattagtc
     5221 actgaagtag cggcctgact ttccagctca tgcgccgcgt tgtcatccat ttttatttct
     5281 ggcggaaaat gggcaatgcc tttatgacaa tcgatacagg tttcgccgcc cttttgtgct
     5341 ttgttatgca ttttctgcgc agattcactt tgcgaggcaa tatccatggc atcaaaagaa
     5401 tggcaactac ggcacgttgc agagtcagtt gcttttaatt ctttccatac tgtttcggcc
     5461 atttcctggc gatgagtttc gaacttatcg tcactgtcta ttttgccgct aacaaattca
     5521 tgataaatat ctttagatgc ttttaattta gcaaataaat aatccatccc tgactttgga
     5581 atatggcaat ctgcacattc cgcacgtatc cctttctggt tcgaaaagtg gacagttccc
     5641 tgatattcct caaaaggttt actcatcgag tggcaggaaa ggcaaaatgc tgtatccgac
     5701 gttttatgta aggctttttg cgccagcaat aacccgccgc caccaaccac aaccgctatc
     5761 agcaaaaaca ataacccaat gcgttttttc cctcgcatag attcctctaa ataaattcca
     5821 gaacaccgaa atcattggat aattaaatac acaacgaatt aaccgcttgc ataactcggc
     5881 acaacactgc ctgaaataat cgataaagaa tatgatttat tacaatgtaa tcattaattg
     5941 ctaaggaata accctgttgt tatttagaat atatatttgt cagttttagc aatttaaacc
     6001 ccataattaa tgtgaatata taaaatattt ttagcacaac gctatgttca ctgtcacccg
     6061 ctcaacagat cacggttatc gtacgttttt tatactgctc agggataaaa aaaggcccct
     6121 gttgaaattg caggggcctg gtacgagcaa gcatcatatt gggcgacatg atgcaacggt
     6181 aaaaatcatt tggcctgatg gcgttcaatg attcctttca tttcagcaac cgccgccccg
     6241 tctacgacat aacgcgaata ctcatccgcg tgtgcatctg atgacatgga caatccttga
     6301 ttacgataac gcatcggtga agcttgccac gctcccgcgg agctatggac ttccagcact
     6361 ccggcatcga ggaagtggtg caggttttct gcacggactc ctgctccggc cataatgatt
     6421 ggagcatcac gatgggcaat aagttccata atttttgata aaccttgcag tgcatctgat
     6481 ttttgccctg atgtcagcac ccgggcgatg cccaattccg caagattact gagtgtattt
     6541 aaagggttag cgcacatatc gaaggcgcga tgaaaagtca ctgccagcgg accggcagca
     6601 gccattattt tttccattcg tggcatatcg acattcccgt caacatcgag cacgcccgtc
     6661 accagtccag gaaaacctaa ttcgcggact gtgagcacat cctcaagaat ggcggcaaac
     6721 tcaccgtcgc tgtagcaaaa atcaccaccg cgtgggcgga taatcggatg cacagggatc
     6781 gtcacccact ggcgcacgga tttcagtaca cccaacgacg gcgttaagcc cccctctttt
     6841 ggggctgcgc ataattcaac tctgtctgcg ccgttttgct gcgccgttag tgcacattcc
     6901 atgctgtaac agcaaatttc cagtaatgcc atttttactc cttaattacg ccgactgctc
     6961 gctggcaacg atctcttcaa tggaccacgg atgaaactta atagttgttt tgccatcggt
     7021 gaccgccagc gtcggattcg gtaatcgctc atactcacct tttggcgaac tggttttcac
     7081 tgagatcccc ggtaggctga gtccttcatc agaaagcaat gccagcgcac gggcattcag
     7141 cgtttctgga tcacccggca gaacgatttc aatatgttcc caaccttcgt gtgggtaacg
     7201 tttttccccg ggccacggta gctccacaat ggaaaactgc cagtgcgcaa cctgtaccgg
     7261 ttcatgcaat ttaaacagac aaatcggtct gccattgatc atattttctg acaaaagctc
     7321 gccacactgt tcaaaaccgc gacgccagcg ctcagcggtg acgttttgat ggcaacgcaa
     7381 agaaatgtga tcggcagtca gcggagtgat atccaacccc agacggcggg agagttcatc
     7441 taatgcgtgg gtaaatcgcg gtaaatccga tgcaatatcc tgcagctcgt cgatagattg
     7501 ccagttcgcc ataatcactc ttcgtctttc agtaaaagcg ttaatttacc ctgttgccct
     7561 gcgccaacca accgctgatt tcacgccgct tctgatgcaa tagtgaaaac ggcaatacgc
     7621 cacgcgcacg ttgctgacga aaacagccat ttgcagtata ctcccgccct aatttcttta
     7681 actggtgcgg gcaatttttg ctcgcttcat caatgtaagg tattccggtg aatattcagg
     7741 ctcttctctc agaaaaagtc cgtcaggcca tgattgcggc aggcgcgcct gcggattgcg
     7801 aaccgcaggt tcgtcagtca gcaaaagttc agttcggcga ctatcaggct aacggcatga
     7861 tggcagttgc taaaaaactg ggtatggcac cgcgacaatt agcagagcag gtgctgactc
     7921 atctggatct taacggtatc gccagcaaag ttgagatcgc cggtccaggc tttatcaaca
     7981 ttttccttga tccggcattc ctggctgaac atgttcagca ggcgctggcg tccgatcgtc
     8041 tcggtgtttc tacgccagaa aaacagacca ttgtggttga ctactctgcg ccaaacgtgg
     8101 cgaaagagat gcatgtcggt cacctgcgct ctaccattat tggtgacgca gcagtgcgta
     8161 ctctggagtt cctcggtcac aaagtgattc gcgcaaacca cgtcggcgac tggggcactc
     8221 agttcggtat gctgattgca tggctggaaa agcagcagca ggaaaacgcc ggtgaaatgg
     8281 agctggctga ccttgaaggt ttctaccgcg atgcgaaaaa gcattacgac gaagatgaag
     8341 agtttgccga gcgtgcacgt aactacgtgg taaaactgca aagcggtgac gaatatttcc
     8401 gcgagatgtg gcgcaaactg gtcgacatca ccatgacgca gaaccagatc acctacgatc
     8461 gtctcaacgt gacgctgacc cgtgatgacg tgatgggcga aagcctctac aacccaatgc
     8521 tgccaggaat tgtggcggat ctcaaagcca aaggtctggc agtagaaagc gaaggggcga
     8581 ccgtcgtatt ccttgatgag tttaaaaaca aggaaggcga accgatgggc gtgatcattc
     8641 agaagaaaga tggcggctat ctctacacca ccactgatat cgcctgtgcg aaatatcgtt
     8701 atgaaacact gcatgccgat cgcgtgctgt attacatcga ctcccgtcag catcaacacc
     8761 tgatgcaggc atgggcgatc gtccgtaaag caggctatgt accggaatcc gtaccgctgg
     8821 aacaccacat gttcggcatg atgctgggta aagacggcaa accgttcaaa acccgcgcgg
     8881 gtggtacagt gaaactggcc gatctgctgg atgaagccct ggaacgtgca cgccgtctgg
     8941 tggcagaaaa gaacccggat atgccagctg acgagctgga aaaactggct aacgcggttg
     9001 gtattggtgc ggtgaaatat gcggatctct ccaaaaaccg caccacggac tacatcttcg
     9061 actgggacaa catgctggcg tttgagggta ataccgcgcc atacatgcag tatgcttaca
     9121 cgcgtgtatt gtccgtgttc cgtaaggcag aaattaacga agagcaactg gctgcagctc
     9181 cggtaatcat ccgtgaagat cgtgaagcgc aactggcagc tcgcctgctg cagtttgaag
     9241 aaaccctcac cgtggttgcc cgtgaaggca cgccgcatgt gatgtgtgct tacctgtacg
     9301 atctggctgg tctgttctct ggcttctacg agcactgccc gatcctcagc gcagaaaacg
     9361 aagaagtgcg taacagccgt ctgaaactgg cacaactgac agcgaagacg ctaaagctgg
     9421 gtctggatac gctgggtatt gagacagtag agcgtatgta atcgattttt cgtgagagta
     9481 aagcctgatc agggttacct gatcaggctt ttttattgcc atctaaatgt attctgaaaa
     9541 tggacatgcc attgttttct gactgttgga taagaggcca gaagcgtaat atccggcccc
     9601 agggaaacga taacggttga atttaaggaa taccgcagtg tttaaatttc ttgtattaac
     9661 attaggcatt atctcttgcc aggcttacgc agaagatacg gttatagtaa acgaccatga
     9721 catttcagcc atcaaagatt gttggcaaaa aaattcagat gatgatactg acattaacgt
     9781 gatcaaatca tgcctgcgac aagaatacaa tctcgtcgat gcgcaattaa ataaagccta
     9841 tggtgaagct tatcgttata tagaacaagt gccacgcaca ggtgtaaaaa aaactgatac
     9901 ctaacaactt aacttgctta aaaaatcaca gcgagcctgg ctggatttta gggacaaaga
     9961 atgtgaatta atcctttcaa atgaggacgt tcaggattta agtgaccctt attctgaatc
    10021 agaatggctc tcatgtatga tcatacagac caatacgcga actcgccagt tgcagctata
    10081 ccgtaactct gaagattttt atccaagccc tttgacaaga ggataattca catctttttg
    10141 gcatgttttg ttgcaagcta ttcctgataa ataattgcaa caagacatcg agcctttttc
    10201 actgagttat taaacatact cgcgagcgcg taattttttt gtccttcagc gataattcac
    10261 aatcacttca ttacgttgta cctttagcgg tggaattaac cgcccaccgc ctggcacttc
    10321 ccagataaat cgcaacggtt ctgctgccgc tataccggaa aaggccacgg tggttccgct
    10381 ctgcccctct aattcgacac aacgagattg cgaacacaag cgaacccgca gtcctgaagg
    10441 tgtcgggccg ataagctgat aacgccacgc taccagcgtc atcaatcctg aagcaggttg
    10501 tcgcgtagaa agaggcgcag acgacatcga ctcaccgcga tgatttagcg taattcctac
    10561 actacttgcc tgccacatcc cctccccggc ggcttgcacc agcagcggaa acaataatat
    10621 tgctaataag gttctcatta tttgccgcca attgtcgccg tcatgcggat atgtcggtta
    10681 tcagacagtt ccagattcga caggaccact aactgcggca agctgcggcg caggaagcga
    10741 gacaataatg gtcgcagcgc gtggttcacc aacaatactg gcggcgcacc cagcatctcc
    10801 tgacgggata gagcttcctg agtttgcgcc agtaaacgat ccgccagccc tggctccagt
    10861 ccttccccgc cctgcagcgc ctgtagtaac aaacgttcca gcggtgtatc gaggccaata
    10921 acatggactt catctttgcc aggaaaccac tgctgggtaa tcgcccgtcc caacgccacg
    10981 cgcacgacgg cggttaattc atgtggatcg ctttggatgg gcgcatgttc cgccagcgtt
    11041 tcgagaatgg tgcgcatatc gcgaatcggt actttttcat cgaggagatt ttgcagcact
    11101 ttatgcagtg tggtgagcgt gacgacgcca ggaacgagat cttccgtcag ctttggcatc
    11161 tcctgggcga cgcgatccaa cagctgttgc gcctcctgac gaccaaacag ctctgcggca
    11221 tgctggctaa tgaggtggtt aagatgcgtt gctaccaccg tgctggcctc aaccactgtg
    11281 tacccctgaa tctgcgcctg ttcttttagc gcactttcaa tccagatagc attcaggcca
    11341 aatgccggat cgacggtcgc ctcaccaggt aacgtcccgg cagcggttcc agggttaatc
    11401 gccaaccagc gccccggata agcatcacca ctgccaatct ccacgccttt catcaaaatg
    11461 cgatagcggg caggttgcag atccatattg tcgcgaatgt gcaccactgg cggcagaaat
    11521 cccatctcct gggcaaattt cttgcggata ctgcgtatac ggcccaacaa ctcaccatcc
    11581 tgctggaaat cgaccatcgg gatcagtcga taacccactt ccattcccag agaatcttcc
    11641 agttgtacat cgttccacgt cgcttcgaca acggtattat tctctgccat ttttaccggt
    11701 ttgggttcgg caggcgcttt ttgttcgcgt ccgcgtatcc accaggccag ccccagatcc
    11761 ggcagtgaac agcaaaaata ccaggttcgg cattccaggc accaagccga gtaaaccgag
    11821 cacggcggcg cttaacaaca taacgcttgg gttactgaaa agctgattca ccatctgctc
    11881 gccaacatcc tgatcggtgc tgacacgcgt aacgatgacc cccgcggcgg tagaaatcac
    11941 cagcgtcgga atttgtgcca ccagaccgtc gccaatggtc aatagcgtat aactttccgc
    12001 cgcgtgtccc atgctcatgc catgttgcag cacgccgacc agcaacccgc cgacaacgtt
    12061 aatgaccatg atgaggatcc cggcgctggc atcgccgcga acaaacttac ttgccccgtc
    12121 cattgagccg taaaaatcgg cttcctgagt cacttcggag cggcgttttt tcgcctcatc
    12181 ttcaccaatc aatccagcgt taaggtcggc gtcaatcgcc atctgcttac ccggcatacc
    12241 atcgagaaca aagcgcgcac ccacttctgc gatacgcccg gcacctttgg taatgaccat
    12301 aaagttgatg atcacgagaa tgacaaacac cacgatacct atagcgaaat tgccaccaac
    12361 gaggaagtga ccgaacgctt cgaccacctt ccctgccgcc gccgcgccgg tatgcccttc
    12421 catcaaaatg atacgggttg aagccacgtt aagtgccaga cgcaacaacg tagtaaacaa
    12481 cagaatggtc ggaaacgcag caaactcaag cgtgcgctgg gtaaacatcg ccaccagcaa
    12541 caccatgatc gacaaggcaa tattgaaggt aaacaacagg tcgagtatga atgcgggcag
    12601 tggcagcacc atcatcgaca agatcaacag gatcaaaatc ggtccggcaa ggatctgcca
    12661 ttgtgtcgat ttcaggtttg cgggcaggcg cagcatcgcg gccagattac tcatgggtcg
    12721 gtttctcgtt aataaaatcc agggcttccg gcaccggaag atgagtaggt tgtacagggc
    12781 gctgtccacc agccagacgc cagcgtttca gttgccagat ccaggccagc acttccgcca
    12841 ccgcggcgta cagttgaccc gggatttgtt gaccaatctc cgcatgtcga tacagcgctc
    12901 gcgccagcgg cggcgcttca agcgtcggga cgttattttc agcgccaatt tcacgaatgc
    12961 gcagcgcgac cagccctgca cctttagcga ccactttcgg tgcgctcatt ttgttttcgt
    13021 catactgcaa cgctaccgaa tagtgggtcg ggttattgac aatgacatcc gctttcggca
    13081 catcgaccat catccgacgc cgtgcggcag ctcgctgcat ctgacggatc cgtcctttaa
    13141 catgggggtc gccttcgctt tgtttgaact catcacgaat atcctgccgc gacattcgca
    13201 gctttttcag gtggctgaag atttggaaaa agacgtcaaa tcccaccatt ggaatgacac
    13261 caagcaccac cagcagtgcg catagcccta ccaaatccat cgcattaccc atggcggtaa
    13321 tcggagactc ggccagtaag cgcatcatct gcggccagtg atgccagaga aaaaaacccg
    13381 tcacgctgcc aaccaggatg gttttcaaaa ttgctttaag caactccgcg ccagtctgtg
    13441 ccgagaacat ccgtttaatg cccggtagcg ggttgagttt ggaaaacttc ggctgcaagg
    13501 attttccgct aaataccagc ccccccagca tgaccggaga aatgagcgct accagcacca
    13561 cgccgctaat cagcggtagc agcgccagca tggcttctct gatcagcaga ataatctgcc
    13621 cgaggatcag attcgggtct ttgataatac tgtgatcaaa atgcagccca gcggagagca
    13681 tgcccgacaa tcgacgggcc agcgacacac cgccgaacca gataacacac acgcccacca
    13741 gcaaaatcag cagtgaggtc agttcacggg aacgcgggat ttagggcttt tgctgccaca
    13801 catcaagcat agtgtgcgtt tgtcggatgc ggcgtcatcg ccttatcaga ccgcctgata
    13861 tgacgtggtc acgccacatc aggcaataca aatcaaaatc caagactatc caacaaatcg
    13921 tccaccagat cctgactggc taccacaccg gctttgctgg tatcgacctg aggtccatta
    13981 agcaaactct ggttttcacg ttttggacgc gactcctgtt ccgggatgtt ttccaacagc
    14041 accatcagca actggcgttc gatctcctga atgacatcca tcatccgctt aataacctgc
    14101 ccggtgagat cctgaaaatc ctgcgccatc atgatttcca gcagttgcgc gttagtaaag
    14161 ctggtatgcg cgggtacatc tgccagaaat tgtcgtgtat ctgttaccag ttcacgggcg
    14221 tcggcaaggt caatcggatc ggcaaaccag tcatcccaac gttgggttaa cgcttttgct
    14281 gatttctcca tttgatcctg atgcggttgt gacgcctcaa cactgttcag cgcccgctcc
    14341 gcagcctggg cggtcatctg cacaacatag tacaaacgat cgcgcgcatc ggggatggct
    14401 tccgccgctt cggcaatggc ctgatccagc cccagttccc gcaaactgtc gcgcagcata
    14461 cgcgtcaggc tgccgatgcg cgcaatgata tcgccagctg aatgctcgtc agcaggtttg
    14521 attgatggtt gcatcatagt cgcatcctca catgtccagt ttatcaaaga ttttgttgag
    14581 tttttcctcc agcgtcgcgg cggtaaatgg cttcaccaca tagccactgg cccccgcttg
    14641 cgccgcagca atgatgttct ctttcttcgc ttctgcagtc accattaaca ctggcaatgc
    14701 cgacatcgcg ccatccgcac gaattgtttt cagcaattcc aggccatcca tattgggcat
    14761 gttccagtcg gagataacaa atccataacc gcctgcctgc aacttattga gagcgtcgac
    14821 gccatcttcc gcttcctcaa cattattgaa tcccagctct ttcagcaggt tacgcactat
    14881 gcgtcgcatg gtggaaaagt catccacaac caaaaattta agttctttat ccgccatttc
    14941 acactcctga tttaaatacg tatcgcctgt ccggcactaa tttttgccaa catttgctgg
    15001 cttacctggc taagatcgac cacttcgcag acaccaccca tattgatggc ctcgcgcggc
    15061 atgccgaaca ccacgcaact tgcttcgttt tgcgcaaggg tccatgcccc cgcctgacgc
    15121 atcgccaaca ttcccaccgc gccgtcgttg cccataccgg tcaggatcac cccaaccgca
    15181 ttacgccccg cctgtttggc gacagaatgg aacaacacat ctaccgaagg ccgatgacgg
    15241 ttaaccgccg ggccgtcgtg aattttgatt tgataatttg cgccactacg cgccagttcc
    15301 atatgccgat cgcccggcgc aatataggca tgccccggca agacacgttc tccgtcttcg
    15361 gcttctttaa ccccgatctg gcaaagctta ttaagtctgt cggcaaaaga gcgggtgaaa
    15421 ccgggcggca tatgttgggt aattaacaat gccgggctgg aaagcggcaa cggttgcagt
    15481 acgtgacgaa ttgcctcagt tccacccgtt gaagcaccaa tcgcaatcag tttttcagaa
    15541 ctcaacaacg gacccgcctt cagcgttgtc ggtgctgaca atggcttatg tgctgcaagg
    15601 ctcgcctttg ctgccgtacg caccttttca gcaatcattt cgctatacgc cagcattcct
    15661 tcgcgaatac ccagttgcgg tttggtgaca aaatctattg cccccagctc cagcgcgcgc
    15721 agcgtgactt ctgatccttt gccggtcaag gaagaaacca tcacaacggg cattggacgc
    15781 aaacgcatta atttttcgag gaaatccagt ccgtccatcc gcggcatttc aacatccagc
    15841 gtcagcacat cgggattgaa tttcttaatc aagtcacgcg cgaccagcgg atcaggcgcg
    15901 gtcgccacca tttccatgtc gctatggctg ttgatgattt ctgtcatgat ctggcgcatc
    15961 agtgccgaat catcgacaga taacaccctg attttgctca tcgttaatcc ttacttagcg
    16021 catacaccgt ctgaccacgc agcgtgaagc ggcgctcaag gtggctaaag ttttcagagt
    16081 gacccgcaaa cagcaatccg tcgggtttaa ggagcggaac aaagcggcgc aaaatctcct
    16141 gctgggtatt ttgatcgaag tagatcatga cgttacgaca gaagatcgca tcaaacggcc
    16201 ccggcacggt gtactgtttc gccagtagat tcagcggggc aaaatcaaca tagttcgcca
    16261 gctcctgacg cacgcgtacc agcccttcat gcggtcccgt ccctcgcatg aaataccgtt
    16321 gcagttgctg cggcgtcagg tttttcaact cttcatggcg ataaataccg cttctggctt
    16381 tttccagcac ttcggtgtcg atatcactgg caaacacttt ccagcgtccg ggcgcggtgc
    16441 ccaatgtgtc agccagcgtc atcgcaatgc tgtacggctc ttcgccggtt gaagccgccg
    16501 cgctccatac gcgatactcg ccagaacggc gacgtgcgtg atccgcgagc agagggaaat
    16561 gatgtgcctc acggaaaaat gccgtcagat tcgtggtcag cgaattgata aacgcctgcc
    16621 actcaccgct gtgctgatta gattccagca agttcagata atgaccgaaa tccgtcagtc
    16681 ctagcgaacg caaacgacga accagtcggt tgtaaaccat gtcgcgttta tgatcggcca
    16741 ggacgatccc ggctcgttga tagatcaatt gacttatccg ccgaaaatgc gcgtcggaaa
    16801 gcgccaggcg ctcggtcatc tgtaacaata aagacgtttg cccacagggc agagatgaag
    16861 tcatagcgcc ttctcaatca cttcaggata ccactggcgc aatttgtaac tgcgccgact
    16921 catgtcgtgc tacttcatgt tcttcaaggg taaataccgc cacacgcgac gaaagatggt
    16981 cggcctgatt cgccagttgt tccgttgcca ccgccgcttc ttctaccagc gaggcgttct
    17041 gctgagtcac ctgatccatc tggctgacag cctgtgcaac ctgctcaatc ccccgccgtt
    17101 gttcttccga cgccgaagca atttctccca taatgtcgtt cacgcgggtc accgaactga
    17161 caatatcggt catggtcgcg gcggcgttat tcaccagttt cgaaccctgc tggacacgat
    17221 tgactgactc ttcgatcagc cctttgatct cttttgctgc ctgcgcgcta cggctggcaa
    17281 gattgcgcac ttcacctgcc actaccgcaa aaccacgccc ctgctctccg gcgcgagccg
    17341 cttccactgc cgcattcagg gccagaatat tggtctggaa agcaattccg tcgataacgc
    17401 tgataatgtc gccaattttt tgcgagctgg tggcgatctc ctgcatggtg tgagtcatgg
    17461 tactgacctg aacaccgccc gcctgcgccg ttgtcgcggc attttttgcc agttccgacg
    17521 cctgtcgtgc gttatcggcg ttttgcccta ccgtggcggt taattgctcc atactggcgg
    17581 ccgtttgtgc cagcgatgcc gcctgctgtt cggtacgact tgagagatcg ttattgcctg
    17641 cgacaatctc cgcgatccca atgtgcatct catggcttcc cttacgcaca tcactcaccg
    17701 tcccacgcaa agcctgctgc atggtcttca ggctggcaaa aatggcggtg atctcattac
    17761 gaccatatac cgcaatcgga cgcgccagat tacccgcagc aatgctgtca aaatggctac
    17821 caataatggc cagtggttga acaatcatct tgcgcgtcca ccacagcgca ctgctgatgt
    17881 agattgccgc aacaataatc atgctgataa acaccagcgc cgaaatctga tagttacgct
    17941 gactttgcgc actggcggct tccagcacat ggttgatctc cagctgccag gcctcaaagt
    18001 taacgtcaaa cgcattctgt gatccctgca ccggcgcagt gaggaaatcc gaaagttgat
    18061 tactttcaag ccaggtcgcc tgatgttcga gatcgttgtg ccagcgggca aaacttttct
    18121 ccgtctcttt ttgcaatgcc ctgacgtgct cgttgcccgc agtcatcgcc ataaaacttt
    18181 taaacagcgt ggtggattgc gtcagactgg cgcgcgccgt cgtcatcaac gttttaatgt
    18241 catccgccgg atagctaagt gccgtcagag tgcccgcttt gttcagcgcg gtactggcct
    18301 gtaacattat cgcccgagtt tgcgctaatg ccgcacgttg ctgattgctc tgctcgacct
    18361 gattcagtcg ttgcaaatcg tcgcgaaatg cccaaaaaga catgccgtta ctgccaatct
    18421 gcaagatccc gcagagaatc aaaattaaaa acagcgtggt cgaaattcga atacgattaa
    18481 acatcaacgc tccccatcag gcggcaatga ccgcgttagt aaatactcgt caaaatgttt
    18541 cccagtttgg atcttgttca gcaattcgca gtcgtggctg tgccggtggt tgctcactgg
    18601 caggacggga tggtgtttgc ggtttattgg tgagtgggct ggctgccaga cggaacgtgg
    18661 aaaccgcttg cgttaaacga ctcgcctgtt cttccagcgc agcggcggcg gcagctgatt
    18721 cctgcaccag cgatgcgttc tgttgcgtga cgcgatccat ttccgaaacc gccaatgcga
    18781 cttgaacgat gccacggctc tgttcatccg atgccgatgc aatctcgccc ataatgtcag
    18841 tcacgcgagt gacagcattg acgatattgt tcattgtttc cccggcgctt tcgaccagca
    18901 ccgaaccggt atcaacgcgt gcgacggagt cttcaatgag ggctttgatc tcttttgccg
    18961 cctggacgct gcgactggca agattacgca cttcacccgc caccacggca aaaccacggc
    19021 cctgttcacc cgcacgcgcg gcttcaaccg cggcattcag cgcgaggata ttagtctgga
    19081 aggcaatacc gtcgataacg ctgataatgt cggcaatttt cttcgaacta tcggcgatct
    19141 catgcatcgt tttcactacg ccatccacca ctttgccgcc gtgctgggcg gtgtcggagg
    19201 cactttgcgc cagttgcgag gcctggcggg cgttatcggc gttttgcttc actgtcgcgg
    19261 tgagctgctc catgctggcg gcagtttctt ccagcgcgga tgcctgctgt tcagtacggg
    19321 aggaaagatc ggtgttgccc gccgcaattt cacgggtacc ggcatagatg gcatctgaac
    19381 cttcgcggac atgagtgacg gtgtcagtca aagagcgttg catatgtgaa acgctctgcg
    19441 ccaggtcgcc catttcactg cgcccgtcaa tgttttgcat tccctgggtt ggctgagcga
    19501 aataagctcc agtattgcca taatctagat aatcaatcag ttcagttaac gctgtgtaat
    19561 agtttttata tttttcatca atattacgac tggtagcgac catttcaggt aacggtgcca
    19621 tgcttttgaa ttttttataa tgcgtcgctg cctgcgccaa tgttttcctg gcgctatcga
    19681 gcaattcaac tttggcgtta ctttgttgat tggaggaatc catcatcatc cgcaccgctg
    19741 aacgactcag gttaatgcgc gtttgcagca ttaaatccca ggttgacgtc agctcgccct
    19801 gctgttcccg caattgattg gaaaccacaa agctcttctg gctatggtga agggaagaaa
    19861 aaaacagact gccggaaata agctgtaaca gtgcaaatac ccccaacacc attaccaaca
    19921 gcgtgactac gcggatacgg ttaatcataa ggcaccttcc tgaaaacaag ttgatctcgt
    19981 tatcggcaag aaggggggaa actttattgc tgatgccacc cgccgcgaaa ttgaaataaa
    20041 aaacccgatg cgcagatcat cgggttcatt tcaattgagg aaatcgggag aattacgcca
    20101 cttctgacgc cgcgctatct aacagcgcca tctcttcgct gttcagcagt ttttcgatgt
    20161 tcaccagaat caacatccgg tcgcccagtg cgcccagtcc agtgagatat tctgttgaaa
    20221 gcgtcacggc aaattccggt gccggacgaa tttgctccgc cgtcaatgaa agcacgtctg
    20281 agacgccgtc aaccacgatg ccgaccaccc gctgtccgag attcaggacg ataactaccg
    20341 tgttgtcgtt atagtccaca tccacctagc tgaacttaat tcgtaagtca acaatcagca
    20401 caataacgcc gcgcagattc gtgacgcctt tgataaacgc tggcgtgttc gcaatccgtg
    20461 ttacctgatc gtagccacgg atctcctgca ctttcaggat atcaataccg tactcttcat
    20521 caccaagggt aaataccaga aattcctggc ctgacggctc gctggccagc tttgttacat
    20581 tcgtcatacc ggtcatattg ttaccttttt actcattcag gcggcggtgt tcgccatacg
    20641 ttgttcgcgg tttatcgcct gcaaggcgga gacatcaaca atcagtgcca cgctgccgtc
    20701 gccaagaatg gtcgcagcag aaatgccggg gactttgcga tagttacttt caaggttttt
    20761 aaccacaacc tggtgctgac caattaattg atccaccagc aaggcgtagc ggcgaccgcc
    20821 actttgtaag atcaccacaa ttccctgggt ggcttcggtt ttcgcgcccg cgacgttgaa
    20881 cactttccac agttcgacga tgggcagata ttcgccccgc acttccagca cccgctcgcc
    20941 gccggccagt ggatgcagat cggcttcacg gggttgcagt gattccatga cagcattcag
    21001 cggcagaatg aaaacttcat ccgcaacgcg tacggacatg ccgtcgagga tggccagcgt
    21061 cagcggcagt aaaatgcgga tcgtagtgcc agtaccctgc ttcgactgga tttcgacatg
    21121 accgcccatc tcctggatat tacgtttaac gacgtccatg ccgacgccgc gcccggagac
    21181 gtcggtgacc tgctctgccg tggagaagcc tggtgcaaat atcagcatcg caacttcgtc
    21241 gtcgctcatg ttttcgctga cagtcaaacc ttgcgaggcc gcttttgcca gaattcgctc
    21301 acggtttagc cccgccccat cgtcggtcac ttcaatgcaa atgttgccgc cctgatgttc
    21361 ggcagacaga attaaatttc cgacgctgtt tttacctgcg gcgagccgtt tttctggcag
    21421 ttcaataccg tgatcgaggc tattgcgtac caggtgggtc agcgggtcga taatgcgttc
    21481 tatcaggctc ttgtcgagct cagtggaact gcccaccagc gtcagttcta cctgcttgcc
    21541 gagttttccc gccagatcac gcaccagccg gggatagcga ctaaaaacat attccatcgg
    21601 catcatgcga atcgacatca ctgattcctg caaatcacgg gcgttacgtt gtaactgccc
    21661 catgctggtt atcaaatcac catgattaac cgggtccagt tcgctggaac gctgggcaag
    21721 catggactgg gtgataacca gctcgccgac gaggttaatt aattgatcaa ccttttctac
    21781 cgctacacgg atgctggtgg attcactgct gcgcgtcgtt ttttcccgct ccacgcggcc
    21841 ggttggtgct tgttcggctg ccagtttaag cactggtggg gtggatattt ttggcgagac
    21901 ttctactgtt tcaaaggtaa tctgatcggc ttcaatcaca aaacagagta ccgctgtgat
    21961 gtcatcttcg gcgatgtcgc ccggtaatat tgccgagagc gaatccgccc ctttcaccac
    22021 gtcagttaac gttatcagat gtcccagttc ttcttccagc aggtcgactt ccccggcctt
    22081 caggcgcgaa aggataattc gtcgcggcga ctgactgcga ctctgctcat cttgcggttc
    22141 acttttggca accacactta atcgggtcac tgcggatggc gtttcgcctt tcgcttctaa
    22201 tgccaattga cgcaaggcct ggcagatata atcgaagctg gcggcatccg gctcttgcga
    22261 ctgtttataa gcgtcgagct gttcttgcat gatgtccttc gtttccaaaa acagattgat
    22321 aatgtcggtg ttgagttgca tctcacctcg tctggcttca tcgagcaggt tttccatcag
    22381 atgcgtggtt tcctgcaaaa cgctgaagcc aaaagttcct gcccctcctt tgatcgagtg
    22441 gacagcccga aagatggcat tcaattgttc ggcatctggc gcttccggct gcaaaaccag
    22501 cagatgctgc tccatatcag ccaacagttc gtccgcttca tcaaaaaatg tctgataaaa
    22561 atcgcttata tccatgctca cgctgtcacc tcggttcggc tgatggcatt gtgggaacac
    22621 tgacctgtga ggtgtactgg caatagcgga cactaccatt tgttcttt
//
LOCUS       DAJVUN010000057        22423 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.057, whole genome shotgun sequence.
ACCESSION   DAJVUN010000057 DAJVUN010000000
VERSION     DAJVUN010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22423
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.057"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            204..623
                     /locus_tag="OQQ76_001818"
     CDS             204..623
                     /locus_tag="OQQ76_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS1968341.1"
                     /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL
                     IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR
                     PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR"
     gene            623..1890
                     /gene="umuC"
                     /locus_tag="OQQ76_001819"
                     /pseudo
     CDS             623..1890
                     /gene="umuC"
                     /locus_tag="OQQ76_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase V catalytic protein"
     gene            complement(1936..2466)
                     /gene="dsbB"
                     /locus_tag="OQQ76_001820"
     CDS             complement(1936..2466)
                     /gene="dsbB"
                     /locus_tag="OQQ76_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HCS1968342.1"
                     /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC
                     IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA
                     TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLV
                     MISQPFKAKKRDLFGR"
     gene            complement(2612..4153)
                     /gene="nhaB"
                     /locus_tag="OQQ76_001821"
     CDS             complement(2612..4153)
                     /gene="nhaB"
                     /locus_tag="OQQ76_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter NhaB"
                     /protein_id="HCS1968343.1"
                     /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG
                     WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM
                     VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG
                     FYGIYHRVASSRTEDTDLQDDSHIDKHYKVFLEQFRGFLRSLMMHAGVGTALGGVMTM
                     VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV
                     REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL
                     TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF
                     YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN
                     GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG
                     WIATL"
     gene            4375..5094
                     /gene="fadR"
                     /locus_tag="OQQ76_001822"
     CDS             4375..5094
                     /gene="fadR"
                     /locus_tag="OQQ76_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HCS1968344.1"
                     /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT
                     RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL
                     SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI
                     YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE
                     SGEIWHRMQKNLPGDLAIQGR"
     gene            complement(5146..6678)
                     /locus_tag="OQQ76_001823"
     CDS             complement(5146..6678)
                     /locus_tag="OQQ76_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HCS1968345.1"
                     /translation="MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTY
                     PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP
                     CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC
                     EERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR
                     TLPKREEEKTVAEARRYPSELQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQK
                     QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP
                     YALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK
                     VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLR
                     GDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMG
                     NL"
     gene            7008..8306
                     /gene="dadA"
                     /locus_tag="OQQ76_001824"
     CDS             7008..8306
                     /gene="dadA"
                     /locus_tag="OQQ76_001824"
                     /EC_number="1.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HCS1968346.1"
                     /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA
                     GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM
                     ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIVVLEDA
                     GVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF
                     RFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS
                     LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV
                     VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQ
                     LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS"
     gene            8316..9375
                     /gene="dadX"
                     /locus_tag="OQQ76_001825"
                     /pseudo
     CDS             8316..9375
                     /gene="dadX"
                     /locus_tag="OQQ76_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309712.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catabolic alanine racemase DadX"
     gene            complement(9762..11498)
                     /locus_tag="OQQ76_001826"
     CDS             complement(9762..11498)
                     /locus_tag="OQQ76_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HCS1968347.1"
                     /translation="MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML
                     AGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI
                     TSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS
                     NDPMAVFLTITLIAMIQQHESSVSWMFVVDILQQFGLGIVIGLGGGYLLLQMINRIAL
                     PAGLYPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW
                     LAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERV
                     FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKV
                     VVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPKETRIAALFRDN
                     QLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALDQRFFGDFILEASAKYA
                     DVALIYGLEDGREYRDKQQTLGEIVQQLLGAAPVVGDQVEFAGMIWTVAEKEDNEVLK
                     IGVRVAEEEAES"
     gene            complement(11593..12507)
                     /gene="ldcA"
                     /locus_tag="OQQ76_001827"
     CDS             complement(11593..12507)
                     /gene="ldcA"
                     /locus_tag="OQQ76_001827"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muramoyltetrapeptide carboxypeptidase"
                     /protein_id="HCS1968348.1"
                     /translation="MSLFHLIAPSGYSIKQHAALRGIQRLTDAGHQVNNVEVIARRCE
                     RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLI
                     CGHSDFTAIQCGLLAQGNVITFSGPMLVVNFGADELNAFTEHHFWLALRNKTFTIEWQ
                     GEGPTCQTEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYH
                     AGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVT
                     LPLGAHAILNNTREGTQLTISGHPVLKM"
     gene            12607..13218
                     /gene="emtA"
                     /locus_tag="OQQ76_001828"
     CDS             12607..13218
                     /gene="emtA"
                     /locus_tag="OQQ76_001828"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309714.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     EmtA"
                     /protein_id="HCS1968349.1"
                     /translation="MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQ
                     KAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP
                     TTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSD
                     RKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDAM"
     gene            complement(13220..13954)
                     /locus_tag="OQQ76_001829"
     CDS             complement(13220..13954)
                     /locus_tag="OQQ76_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar brake protein"
                     /protein_id="HCS1968350.1"
                     /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKIL
                     AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT
                     VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP
                     AELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSP
                     TVERQLQRIIFSLEQEAREKADKVRD"
     gene            14155..14409
                     /locus_tag="OQQ76_001830"
     CDS             14155..14409
                     /locus_tag="OQQ76_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1968351.1"
                     /translation="MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGG
                     WLATMFGIGGSISGFNLHSFLVAVVGAILVLGVFRLLRRE"
     gene            14588..15028
                     /locus_tag="OQQ76_001831"
     CDS             14588..15028
                     /locus_tag="OQQ76_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968352.1"
                     /translation="MIQKINILDSSQSGVKNGADSEAVLAALIEHLELINPSGRLSQN
                     TRSAMLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALY
                     RQRRCKSPGDDSETLTRRNDAIFGNHVWQTFAQYFPPRLEKPSV"
     gene            complement(15107..16679)
                     /locus_tag="OQQ76_001832"
                     /pseudo
     CDS             complement(15107..16679)
                     /locus_tag="OQQ76_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
     gene            complement(16999..18417)
                     /gene="dhaM"
                     /locus_tag="OQQ76_001833"
     CDS             complement(16999..18417)
                     /gene="dhaM"
                     /locus_tag="OQQ76_001833"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaM"
                     /protein_id="HCS1968353.1"
                     /translation="MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNP
                     IGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPKIAAKVRLCAAPLVE
                     GTLAATVSAASGANIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAV
                     VIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLI
                     AKGPEAEEALIAFRQLAEDNFGETEEVAPPTLRPVPPVSGKAFYYQPVLYTVQAKSTL
                     TVEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLDDPELLAAASEL
                     LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQ
                     FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSHSALIARELGIGWICQQGEKL
                     YAIQPEETLTLDVKTQRFNRQG"
     gene            complement(18428..19060)
                     /gene="dhaL"
                     /locus_tag="OQQ76_001834"
     CDS             complement(18428..19060)
                     /gene="dhaL"
                     /locus_tag="OQQ76_001834"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HCS1968354.1"
                     /translation="MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNR
                     GFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLT
                     LEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASS
                     IAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE"
     gene            complement(19032..20141)
                     /gene="dhaK"
                     /locus_tag="OQQ76_001835"
     CDS             complement(19032..20141)
                     /gene="dhaK"
                     /locus_tag="OQQ76_001835"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000733719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HCS1968355.1"
                     /translation="MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAG
                     KVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLI
                     IKNYTGDILNFETATELLHDSGVKVTSVVIDDDVAVKDSLYTAGRRGVANTVLIEKLV
                     GAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIH
                     GEPGIDRRSFSSLDQTVDEMFDTLLGNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGD
                     RVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLK
                     VDDETLALWDAPVHTPALNWGKLGESNVTEQNSNC"
     gene            20369..22288
                     /gene="dhaR"
                     /locus_tag="OQQ76_001836"
     CDS             20369..22288
                     /gene="dhaR"
                     /locus_tag="OQQ76_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415719.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase operon
                     transcriptional regulator DhaR"
                     /protein_id="HCS1968356.1"
                     /translation="MSGAFNNDGRGISPLIATSWERCNKLMKRETWSVPHQAQGVTFA
                     SIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGF
                     HDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQALWNWAFCATPLFDSKGRLTGT
                     IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLTETNRHLNQLNALLESMDDGVIS
                     WDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE
                     SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQT
                     RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL
                     AEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA
                     RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN
                     KLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE
                     HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRK
                     MKQHGIDAGQFKRRV"
BASE COUNT         5598 a         5554 c         5825 g         5446 t
ORIGIN      
        1 ttctattcta tttttttgcc gggtgatatt tttcatttct gctggatgag cgtcgtcgcc
       61 agaaggccac gtgagcacag gataagagaa cgaaaaatca gcagtctata cagcgacaaa
      121 tattgatagc ctgaatcagt attgatctgc tggcaagaat agactactgt atataaaaac
      181 agtataactt caggcagatt attatgttgt ttatcaagcc tgcggatctc cgcgaaattg
      241 tgacttttcc gctatttagc gatcttgttc agtgtggctt tccttcaccg gcagcagatt
      301 acgtcgaaca gcgcatcgat ctgaatcaac tgttgatcca gcatcccagc gcgacttact
      361 tcgtcaaagc aagtggtgat tctatgattg atggtggaat tagtgacggt gatttactga
      421 ttgtcgatag cgctattacc gccagccatg gtgatattgt catcgctgct gttgacggcg
      481 agtttacggt gaaaaaattg caactacgcc cgacggtaca gcttattccc atgaacagtg
      541 cgtactcgcc cattaccatc agtagcgaag atacgctgga tgtctttggt gtggtgatcc
      601 acgtcgttaa ggcgatgcgc tgatgtttgc tctctgtgat gtaaacgcgt tttatgccag
      661 ctgtgagacg gtgtttcgcc ctgatttatg gggtaaaccg gtggttgtgc tatcgaataa
      721 tgacggttgc gttatcgccc gaaacgctga ggcaaaggtg ctgggtgtta aaatgggcga
      781 tccttggttc aaacaaaaag atctgtttcg tcgctgtggt gtggtttgct ttagcagcaa
      841 ttatgagctt tacgcagaca tgagcaatcg ggtgatgtcg acgctggaag aactatcgcc
      901 ccgcgtcgag atttacagta ttgatgaggc attctgcgat ctgacaggtg tgcgtaattg
      961 tcgcgatctg actgattttg gcagagaaat tcgcgcaacg gtgctacaac gtacccatct
     1021 tactgttggt gtggggatcg cccagaccaa aacgctggct aagcttgcca atcatgcggc
     1081 aaaaaaatgg cagcggcaga cgggggggtg gtggatttat caaatctgga acgccagcgt
     1141 aaattaatgt ctgctctccc cgtggatgac gtctggggga ttggacggcg gatcagcaaa
     1201 aaactggacg cgatggggat caaaaccgtt cttgatttgg cggatacaga tatccggttt
     1261 atccgtaaac attttaatgt cgtgctcgaa agaacggtgc gtgaactgcg cggtgaaccc
     1321 tgtttgctac tggaagaatt tgcaccgaca aagcaggaaa ttatctgttc ccgctcgttt
     1381 ggtgaacgta tcacggatta tacgtcgatg cggcaggcca tttgtagtta cgctgcccgg
     1441 gcggcggaaa aacttcgcag tgagcatcaa tattgtcggt ttatctccac atttattaag
     1501 acgtcaccat ttgcgctcaa tgaaccttat tacggcaata gcgcgtcggt aaaactgctg
     1561 acgcccactc aggacagcag ggatatcatt aacgccgcta cgcgatctct ggatgccatc
     1621 tggcaagcgg gccatcgcta ccaaaaagcg ggcgtgatgc tgggggattt cttcagtcag
     1681 ggagtcgcgc agctcaattt attcgatgac aacgcaccgc gccccgggag tgagcaattg
     1741 atgacggtaa tggatacact gaatgctaaa gagggcagag gaacactcta ttttgccggg
     1801 caggggatcc aacaacaatg gcagatgaag cgagccatgc tttcaccacg ttatacaacg
     1861 cgaagttctg atttactgcg ggtcaaataa atatagcggc aggaaaaaag cgctcccgca
     1921 ggagcgccga atggattagc gaccgaacag atcacgtttt ttcgctttaa acggctggga
     1981 aatcatcacc agcaccgcga caatcaggta agcgataaaa ataccgagca gccactgcgg
     2041 catttccaga cctaaaaaat cccactgacg ctcggcgcaa tcgccagagg cgacaaacac
     2101 ttgcggcacc catttatcca gcggcagcca ttccgggaaa cgaaccataa aatcacaggt
     2161 ggcaaacggc gaaggataga gctgaagcat ggtgtgctcg taagttaact gcacaccgcg
     2221 gaacgcacta tacaaccaga taaccatcgc tacataacgc agcggagttt tcggggcgat
     2281 cgcgccaatc agcgcagcac ccagaacgcc gaataacgcg cagcgttcat aaatacagag
     2341 cacgcaaggt ttcagtaaca tcacatgctg gaaccacagc gccgtcagtt ccagtgccag
     2401 agcagtaaac gccatcaaca gccacgcgcc ccggccttgt gaacattggt tcaaaaatcg
     2461 caacataatc atttccctgc aatatgcata gagtgcgcag tttaaaccaa ttcattcgct
     2521 gcgccaccag gaggcagcaa aaataggacg caattggaca attatcgggc gaaaaggcaa
     2581 accgggcatt tatatgcccg gtaagttgtt atcaaagcgt tgctatccag cccatttgca
     2641 taaaccattc ggttacaggg gcaagcgtaa actcgacgca gagcagcccg acgagtgtca
     2701 ggacgagggt gtaaggcagg gccatccaca ccatgcggcc ataagagagg cgaatcaatg
     2761 gcgcgagtgc agaggtcagc aggaacagga acgcagcctg accgttcggc gtagcgacag
     2821 agggcagatt ggtaccggta ttaatggcga ccgccagcag ctcgtattgc ttcaacgtga
     2881 tagcgccact ttccattgcc gctttcgctt cgttgatata aatcgtcccc acgaagacgt
     2941 tatccgaaat ggatgacagc aggccgttga aaatatagaa caacgacagc tgagcatgtt
     3001 ccgatgcctg caacacaaac tgaataatcg gcgaaaacag ttgttggtcg ataatcaccg
     3061 cgactaccga gaaaaacacc gtcaacagtg cggtgaatgg cagagattcg gtgaaggctt
     3121 taccgatagc atgttcatcg gtgacaccgg tcaatgatgt cgccagaata atgaccgaca
     3181 aaccaatcaa gccaacctcc gccagatgca acgccagcgc agtcaccagc cagacgccga
     3241 taatcgcctg gacaatcaga cggattttat cctgacgggt acgctggtgg cggctttgat
     3301 cgtcaaactg ttgcaacact tcgcggactt tctccggcag cgtttcaccg tagccaaacc
     3361 aacgcagctt ctctaccagc aggcaggtta acaggccaca aatcagaacc ggaacggtca
     3421 ccggcgacat gcgcaggaag aaatcgccaa aatgccagcc agccgcttta gcgatgatca
     3481 ggttctgtgg ttcgcccacc atggtcatta cgccgcctaa tgcggtgccg acaccggcat
     3541 gcatcatcag gctacgcaga aagccacgga actgttccag aaacactttg taatgcttgt
     3601 cgatatgact atcgtcttgc aggtcggtat cttcagtacg ggaagaggct acgcggtgat
     3661 aaataccata aaaaccgact gcaacgctga tcaccaccgc cacgacggtt aaggcatcga
     3721 ggaacgcgga gaggaacgcc gccgccacgc aaaaagagag cgacagcagc attttggaac
     3781 gaatgcttaa cagcaaacgg gtaaatatga acagcaatag ctgtttcata aaatagatac
     3841 ccgccaccat aaacatcagt aacagcaaga cttcaagatt tgccgccacc tcttcacgga
     3901 cgtgttccgc gctggtcatg ccgatgaata ccgcttcaat agccaacaga ccaccgggga
     3961 gtagcgggta gcatttcagg gccatcgcca gagtgaaaat aaattccgct accagcaacc
     4021 agccagcgac gaaagggctg atgaggaaaa ttaacggatt tacgattaag aaaatgatga
     4081 gggcgagttt gtaccagtcg ggggactggc ccaaaaaatt gcgccatagc gcgcggcccc
     4141 aggagatctc catgatggtt tcccttacct tacaaataat caatgatgtt tttatgttta
     4201 aacgcaaagc ttaacggtca ggcaggagtg aggcaagtct tgatagtcaa ggggaaagag
     4261 atgcggaaaa tgaagccttg atcccttttt tcttcttttt gtctgctatc agcgtagtta
     4321 gccctctggt atgatgagtc caactttgtt ttgctgtgtt atggaaatct cactatggtc
     4381 attaaggcgc aaagcccggc gggtttcgcg gaagagtaca ttattgaaag tatctggaat
     4441 aaccgcttcc ctcccgggac tattttgccc gcagaacgtg aactttcaga attaattggc
     4501 gtaacgcgta ctacgttacg tgaagtgtta cagcgtctgg cacgagatgg ctggttgacc
     4561 attcaacatg gcaagccgac gaaggtgaat aatttctggg aaacctctgg tttaaatatc
     4621 cttgaaacac tggcgcgact ggatcacgaa agtgtgccgc agcttattga taatttgctg
     4681 tcggtgcgta ccaatatttc cactattttt attcgcaccg cgtttcgtca gcatcccgat
     4741 aaagcgcagg aagtgctggc taccgctaat gaagtggccg atcacgccga tgcctttgcc
     4801 gagctggatt acaacatatt ccgcggcctg gcgtttgctt ccggcaaccc gatttacggt
     4861 ctgatcctta acgggatgaa agggctgtat acgcgcattg gtcgtcacta tttcgccaat
     4921 ccggaagcgc gcagtctggc gctgggcttc taccacaaac tgtcggcgtt gtgcagtgaa
     4981 ggcgcgcacg atcaggtgta cgaaacagtg cgtcgctatg ggcatgagag tggcgagatt
     5041 tggcaccgga tgcagaaaaa tctgccgggt gatttagcca ttcaggggcg ataatccctt
     5101 ccgtttaaaa agcaaacccc tcaaacgagg ggttttttgt tgtttttaca gatttcccat
     5161 tcttggcggg caacgttcca gcaactcgac gctgccatct tcgttttgct gttccagcat
     5221 cacatcaaat ccccacaggc gatgcacatg cttcagcact tctttgcgcc cccgatccag
     5281 cggtgcgcga ttatgtggaa tgtaacgcag cgtcagcgaa cggtcgccgc gcaaatccac
     5341 gttccagatc tgaatattcg gctccagatt acttaagtta tattgcgacg ataaccggtt
     5401 acggatctcc cgataacctt cttcattatg aatagcggaa atctccagat aattatgccg
     5461 atcgtcatcc agcacggtga agaagcggaa atcacgcatc actttcggtg acagaaactg
     5521 gctgataaaa ctctcatctt tgaaatcacg catcgcgaaa tgcagcgttt ccagccagtc
     5581 ggaaccggcg atatccggga accagtattt gtcttcttcc gttggcgact gacaaatccg
     5641 tttaatatcc tggaacatgg cgaacccgag ggcatacggg ttgatgccgc tgtaccacgg
     5701 gctgttatag gggggctgga agaccacatt ggtgtggctg tgcaaaaact ccagcataaa
     5761 acgttccgtt actttccctt catcatacag atggttaagg atggtgtagt gccagaaggt
     5821 ggcccagcct tcgttcatca cctgagtctg tttttgcgga taaaaatact ggctcacctt
     5881 acgcacaata cgcaggattt cacgctgcca tgattccagc agtggcgcat ttttctccat
     5941 aaaatagagc aggttttctt gtagttcgga cggatagcgg cgcgcttcag caaccgtttt
     6001 ctcttcctcg cgcttcggca gggtacgcca gagcatattg acctgacttt gtagatactc
     6061 ttcgcgactt ttctgccggg ctttctcttc ttgcagcgag attttttgcg ggcgtttgta
     6121 ccggtccacg ccgtagttca tcagcgcgtg gcacgagtcc agaagccgtt ctacttcatc
     6181 cacgccataa cgttcttcgc actcggtaat atatttacgg gcaaaaatca gataatcgac
     6241 aatcgaactg gcgtcggtcc aactgcggaa taagtaattg tttttaaaga aagagttatg
     6301 cccatagcag gcgtgtgcca tcaccagcgc ttgcatggta atggtgttct cttccatcag
     6361 gtaagcgata cacgggttag agttaatgac gatttcatag gccagtcctt gctgaccgtg
     6421 cttatacagc cgttcagtct cgataaactt tttaccgaat gaccagtgcg gatagttaat
     6481 tggcatgccg acgctggagt aggcatccat catctgttct gaggttatca cttcaatctg
     6541 gtgcgggtag gtatccagcc ggtagagttt cgccacccgg tctatctctg ccagataaac
     6601 atccagcagg tcgaacgtcc agtcgggtcc atcgctcaac cgtgtggtgt ccttattcat
     6661 agaatcgatc gtcgccatac gcgcacctca ttgttgtcgg cgctctctgt gtggagcacc
     6721 tcatttcaag catagaacac ctgttaaaaa ccgcgtcgcc ggagaatttt tttctttgcg
     6781 atttcttatt atcagagtgc cactaatccg cttctgaacg gaattttatg ctggataaaa
     6841 agggcgttca gcaggagata ctaaagacgc catattgccg cagagtcagg gagatgtgag
     6901 ccagctcacc ataaaaaagc tgtatgttga ataatatttt caactgagtt atcaagatgt
     6961 aattagatta ttattctttt actgtatcta ccgttatcgg agtggctatg cgagttgtca
     7021 tactgggaag tggtgtggta ggcgttgcca gcgcctggta cttaaatcag gcaggacatg
     7081 aggtcaccgt cattgatcgg gagccggggg ccgccctgga aaccagcgcc gcgaatgccg
     7141 ggcaaatctc ccccggatat gctgcaccgt gggcggcacc aggtgtgcct ttaaaagcga
     7201 tcaaatggat gttccagcgc catgcgccgc tggcggttcg tctcgacggt acgcagtttc
     7261 agttgaaatg gatgtggcaa atgttacgta actgcgacac cagccactac atggaaaaca
     7321 aagggcggat ggtgcgtctg gcggaataca gccgtgattg cctgaaagca ttgcgcgccg
     7381 aaaccaatat tcagtatgaa gggcgtcagg gtgggacgct gcaactgttc cgtaccgaac
     7441 aacagtatga aaatgcgacc cgcgatatcg tcgtgctgga agatgccggc gtaccgtatc
     7501 agctgctgga atccagccgc ctggcggaag tggagccagc gctggcagaa gtagcgcaca
     7561 aactgacggg gggtctgcaa ctgcccaatg atgaaaccgg agactgccag ctgtttaccc
     7621 agaatctggc gcggatggca gagcaggcgg gggttaaatt ccgctttaat acgcccgttg
     7681 accaactgct ttgcgacggc gagcaaatct acggcgtgaa gtgtggcgat gaagtgatta
     7741 aggccgatgc gtatgtgatg gcgtttggtt cttactcgac ggcgatgctc aaaggcattg
     7801 ttgatattcc ggtgtatccg ctgaaaggct actcgctgac tattccaatt gcgcaggaag
     7861 atggtgcgcc agtatccacc attcttgatg aaacctacaa aatcgccatt acccgtttcg
     7921 ataaccgcat tcgtgttggc ggaatggcgg aaattgttgg ttttaacacc gagctgttgc
     7981 aaccgcgtcg tgaaacgctg gaaatggtgg ttcgcgatct ctatccacgc ggcggtcatg
     8041 tcgagcaggc gactttctgg acgggtttgc gcccgatgac gccagacggt acgccggttg
     8101 tcgggcgtac acgctttaaa aatctgtggc tgaataccgg tcacggcacg ctcggctgga
     8161 cgatggcttg cggttccggt cagttgttaa gcgatctgct ctctggtcgc acgccagcga
     8221 tcccatatga ggatctaagc gtagcgcgct acagccgtgg atttacgcca tcacgtccgg
     8281 gccatttaca tggcgcacac agctaaggaa acgagatgac ccgtccgata caggccagcc
     8341 tcgatctgca ggcattaaaa cagaatctgt ccattgtccg ccaggccgcg ccgcacgcgg
     8401 gtggtaaaag cgaacgctta cgggcatggt attgagcgta tctggagcgc gctcggggcc
     8461 accgatggct ttgcattact taacctggaa gaggcaataa cgttacgtga gcgcggctgg
     8521 aaggggccga tcctgatgct ggaaggattt ttccatgctc aggatctgga gatttatgac
     8581 cagcaccgcc tgaccacctg cgtacacagc aactggcagc tcaaagcact gcaaaatgcg
     8641 cggctaaaag caccgttgga tatttatctt aaagtgaaca gtgggatgaa tcggttgggc
     8701 ttccagcccg atcgcgtgct taccgtctgg cagcagttgc gggcaatggc gaatgttggc
     8761 gagatgaccc tgatgtcgca ttttgccgaa gcggaacatc ctgatggaat ttccagcgcg
     8821 atggcgcgta ttgagcaggc ggcggaaggg ctggagtgtc ggcgttcgtt gtccaattcg
     8881 gcggcgactc tgtggcatcc ggaagcgcat tttgactggg ttcggcctgg cattattttg
     8941 tatggcgctt cgccgtccgg tcagtggcgt gatatcgcca ataccggatt acgtccggtg
     9001 atgacgctaa gcagtgagat tattggtgtc cagacgctaa aagcgggtga gcgtgtgggc
     9061 tacggcggtc gctatactgc gcgcgatgaa cagcgaatcg gcattgtcgc cgcagggtac
     9121 gccgacggtt atccgcgcca cgcgcctacc ggtacccctg ttttagtgga cggcgtgcgc
     9181 accatgacgg tggggaccgt ctcgatggat atgctggcgg tcgatttaac gccttgcctg
     9241 caggcgggta ttggtacgcc ggttgagctg tggggcaagg agatcaaaat tgatgatgtc
     9301 gccgccgctg ccggaacggt gggctatgag ttgatgtgcg cgctggcgct acgcgtcccg
     9361 gttgtgacgg tgtaacttgt tgtaagccgg atcgtaggca acgtcttctg ggtgcaaaaa
     9421 aaatcatcca tccggctggt cagcaactgt agttgttaat gtgacagagc cattgcccat
     9481 gatagtgtcc attaaaagga tggacactat ttccccggaa cctgaactca ccgcacaggg
     9541 gttctacata aaacgcttac gcttcattgt tgactcggag tcgacttcag ataaatcacg
     9601 ctttaccctt gatggagcct gtacatagat ttgtgtaatt gcctgatttt gatatgttca
     9661 attcaacatc aaatgaaggt taaattatgg acgacaaaca attgcaggct caggctgcgt
     9721 tcagcaaagc atcgcaaccg gcgatagatg cttcattaaa tttaagattc agcttcctct
     9781 tcagccaccc gtacgccaat cttcaacact tcattatctt ctttctcggc caccgtccag
     9841 atcatcccgg caaactctac ctggtcaccg acaaccggtg ccgcgcctaa caactgctgg
     9901 acaatttcac ccagcgtttg ctgcttatca cgatattctc gcccgtcttc caggccatat
     9961 atcagcgcaa catcagcata tttggcgctg gcttcgagaa tgaagtcacc aaagaagcgt
    10021 tgatccagcg cgaccggcgg cgactggctg aacagtttac cgagcgccgg aagatcgcgt
    10081 tcccgaccaa ttacacacaa cacatcgcct tcgcgcagtc gggtgctgcc ggtaggatga
    10141 agcaactggt tatcacgaaa cagtgccgca atacgcgtct cttttggcat atgcaaatcg
    10201 cgcagtgccg cgcccacgca ccatttatcg gcactcaatt gataaacaaa ctgctcccac
    10261 ggattttccg gatgaatatc caggccaacg cgtgacaccg gacgtcccac tggcggaacc
    10321 accactttgg cttttttagc cgcccacgag agtgatgttc cctgcaagag cagtgaaacc
    10381 agaaccacaa agaaggcgac attaaagaac agacgtgcat tctccagccc cgccatcatc
    10441 gggaacacgg ccaggatgat tggcaccgcg ccgcgtaatc ctacccagct gataaacacg
    10501 cgctcacgca gattgaaacc gcggaagggg agcaatccag caaataccga aaggggacgg
    10561 gcgaagaata tcatccatgc cgacaaaatg agcgccggaa tggcaatagg cagcagatcg
    10621 cttgggttaa ccaatagccc cagcaccagg aacatggcga tttgcgccag ccaggcgagg
    10681 ccgtcgaaat tttgcaggat gccgtagcgg ttgcgaatcg gccgattacc cagcagaaaa
    10741 ccgcacagat aaacagccag aataccgctg ccttccagcg ccgtggttaa agcaaaaatt
    10801 aaaataccgc cgcttaatgc cagcaatgga tataatccgg caggcagggc gatgcgatta
    10861 atcatttgca gcagtaaata accaccgcca agtccgatga caatcccgag gccaaattgc
    10921 tgcagaatat cgaccacgaa catccaactg acactgcttt catgttgctg gatcatcgca
    10981 atcagggtaa tcgtcagaaa gaccgccatt ggatcattac tgccggattc aatttccagc
    11041 gtcgagccaa cacgttcgtt aagcccctta ccacccagca gagaaaagac cgctgcagca
    11101 tcggtagagc cgacgatagc gccgattaat aagccttcaa tcaaatcaag attaaacagc
    11161 cacgccgcca tcatgccggt taaaccagag gtgataagca cgcccagcgt cgccagcgac
    11221 agtgccggtc ctaacgccac acgaaaggaa ctggcctgag tgcgcatccc gccgtcgagc
    11281 aaaataatcg ccagtgccag gttacttacc atgtaggcga aggggtaatt atcaaacggg
    11341 ataccgccga cgccatcgac tcctgccagc atgccgatcg ccagaaaaat aaccagaata
    11401 ggaatgccaa gacgggaaga aaatgaacta agtaatatac tgctggtgac aaggatggat
    11461 cctaagatga aaaggctaat tattgttgtg gcatccaacg gtcggttact cctgattacg
    11521 ctgtctctta tataaaccct accatattag cggcagagac agcgttttac ttagccctga
    11581 agcgtgattt ttttacattt taagaacagg atgaccgcta atcgtcaact gagtgccttc
    11641 ccgggtgtta ttcagaatgg catgtgcgcc caacggcagc gtaaccgtgc gttgttcatg
    11701 accaaaatcg aggccggtaa tgagtggaat cgacaggcgg gaacgcaaaa acgcgtacac
    11761 tgactccagg ttgtaacctg cgtcataatc attgggcgtg ctgccgctaa agctaccgag
    11821 aataatcgcc ttctgacgtg gcaaaattcc cgcatgatag agctgcaaca gcatacgttc
    11881 gacgcggaaa gggtgctcgt taatatcttc cagtaccagg ataccgttct caatttttgg
    11941 catccacggt gtaccaatca gtgaaatcag catcgcaaga ttgcctcccc acaacgtgcc
    12001 ttcggtctga catgtcgggc cttccccttg ccattcaatg gtgaaggttt tattgcgtaa
    12061 cgccagccag aaatggtgct cggtaaaggc gttcagttca tccgcaccaa agtttactac
    12121 cagcatgggg ccgctaaagg tgatgacatt gccttgcgcc agaagaccgc actgaatggc
    12181 ggtaaaatcg ctatgtccgc aaatgagtaa cgggtcatgt tgttggcgag ccaccagtgc
    12241 ctgccagtca atatctgcca gtaaacgact ggcaccgtaa ccgccgcgta cagccagcac
    12301 gatggtgttg ggtgtagtca gtctggcaag ggaattgaga tcttccagac gctccgtttc
    12361 cgtacccgca aaacgctcac aacgacgggc aataacctcg acgttattga cttgatgccc
    12421 cgcgtcggta aggcgctgga taccacgcag cgcggcgtgc tgtttaatgc tgtaacccga
    12481 tggggcaatt aagtgaaaca gagacatggc aattccttgc tgacaacaga aacgaaatgt
    12541 atatcatgcc gcttaggtgt gccgttgtca cctcaacggc gattccaggc tataaggata
    12601 gaagaagtga aattgagatg gtttgccttt ttgattgtgt tattagcggg ttgttcatca
    12661 aagcatgact atacgaaccc gccgtggaac gcgaaagttc cggtgcaacg tgcgatgcag
    12721 tggatgccaa taagccagaa agccggtgca gcctggggcg tcgatccaca attgatcacg
    12781 gcgattatcg ctatcgaatc gggtggtaat ccgaacgcgg tgagtaaatc gaatgccatt
    12841 ggtttgatgc agttaaaagc ttcaacctcc ggacgtgatg tttatcgccg tatgggctgg
    12901 agtggtgagc cgacgaccag cgagctgaaa aatccagagc gtaatatttc aatgggggcg
    12961 gcttacctga atattctgga aaccggcccg ctggcaggca ttgaagatcc gaaggtactg
    13021 caatatgcgc tggtggtgtc atacgctaac ggggcaggtg cgctgctacg gactttctcg
    13081 tcagatcgga aaaaggcgat cagcaaaatc aacgatttgg atgctgacga gttcctcgat
    13141 cacgtagcgc gcaatcatcc tgcgccgcag gctccgcgct atatctacaa acttgagcag
    13201 gcactggacg cgatgtaaat cagtcgcgta ctttgtccgc tttctcccgg gcttcctgct
    13261 cgagagagaa aataatccgt tgtaattgcc gctccaccgt cgggctgacg ttaagaaaac
    13321 ggaagctcag acggggagtg gtgatggttt cattcttgcc atcaatcact ttgcgctcgc
    13381 tgatggagat taactgggcg tcaaagtgaa aaacacccca ttgccccatg ttgacttcaa
    13441 tctgagcgaa gcgcatgcct tcttgtaatt cggcaggctt tgctgtttcc agtaatgcgc
    13501 ccatgccgcc taacgacaaa tcatacaggc ggaaacgtaa cgtactgtta tccgccagtt
    13561 tggtctggca aaaataaggc ggatggagtg gggcggagat gcggaaatat cggcgtcgtt
    13621 gtacaaacca taaggtggga ggcggtacgg taataaatgc cggaagctgc aagtattcac
    13681 tctgctgtag ttgttcaaca gtaaactcga ctttcgcacc ctgagtttcg gcggtaatgg
    13741 taatatgctg cgcctttagc acggcgatgt tgtcttcggc ttgactgccg aaatccagca
    13801 ccagtttatc cggggttatt gccagtattt tgctgatcag ctgcccgcca ttccaactga
    13861 gacgcaaagg aattgcggct ttgtgcaaat cgcgtaacac gcccaggacg gctaacggat
    13921 tttgtttcag gaactgctca tggtaatgac tcacgcggaa aaactcctga ctgacaaact
    13981 gtctttggtt tatcggtcac agttaacaaa acttaataca aatgcgtgaa tattttttac
    14041 atgttgttct taaatcagcc gacatacgcc cagcatcgat cccgcccttg cctatactta
    14101 gagcgttgac gtaagcattt cttgcgtccg attcatcgaa acgagggcct gaacatggga
    14161 attattgcct ggattatttt tggcctgata gccggcatta tcgccaagct aatcatgccg
    14221 gggcgtgatg gtggtggatt tttccagacc tgtattctcg ggatagtcgg tgcggtggtc
    14281 ggcggctggc tggcgaccat gtttggcatt ggcggctcca tcagcggttt taatttgcac
    14341 agcttcttgg tggcggtggt gggagctatt ctcgttctgg gcgtattccg cctgctgcga
    14401 agagaataag attttcataa ggcggatagc gatacagatg ccgctatccg cttttcacat
    14461 cagaacgtat attcgacacc tgctttacgg gtgaaaaaaa tcaatatagc acttcgatat
    14521 ccgataaagt cggttcccgg taacaacaac agaatccttt tttaattatt gtttcgttgt
    14581 ttttggtgtg attcagaaaa taaatatttt agacagtagc cagtcaggcg ttaaaaatgg
    14641 ggcggatagt gaggcggttt tggctgcgct tattgaacat ttagaattga tcaatccttc
    14701 tggcagatta agccaaaata cccgttcggc aatgcttcag ttacgcgaag aggaatggtc
    14761 tgaattcttt ttttggttgc taaattctct ggagtgtctg gattatgtga ttattaattt
    14821 aactccagaa agcaaaaaaa cgttgatgag tgaacaccgt aacaatattc aggtagcaat
    14881 cgatgcttta tataggcaac gtcggtgtaa atcaccgggg gatgatagtg aaacacttac
    14941 ccgtagaaat gacgctatct tcggcaacca cgtatggcaa acatttgcgc aatacttccc
    15001 gccaagactt gaaaaaccgt ctgtgtagaa aacaccatag ctatggtgtt atctgccgac
    15061 aacgccatcc ggagaagccg aatgacgttg tcggagtaag cgctggttaa ggtgtgggtt
    15121 gtgcctcttt ggttgagggt tgcgtcgttg ctgacttaac ggtcggacgc gtcgccggaa
    15181 cattgtcaca cggttgctct ttcgggcaga tcaaatccag cattttcagc gtcacgccat
    15241 tggtccagcc aaagccatcc tgtaatggat attcgccacc tctttttgcc cgtagttttg
    15301 taatccttct gtcgcgaccc actgtaacgg tgcccagcca tttggcgcat cccattgttg
    15361 cccacttttc accgacgtgg tgttcaggcc gccgggttgc agcagatgtg ttttcgtcgc
    15421 cgtcgccatt ttgttggcgc gatctttcgc tgccgcattg acgtacagcg ggaacagggc
    15481 ggccgcggtt aactgattgc gcactttatg acttttcagg tcgtaatcgg cataccagcc
    15541 ttgttgatcg ttccacaggt atttttcgat tcctttttga cgggcattcg ccagcgtttc
    15601 gtactggttt gccatcgcgt tatctcctgc agctttgctg gcgcgggcga ggattttttc
    15661 cattttaaac atcaggctgt tcagatcgac cggtacgatg ctggtggtgc gtaaggtatt
    15721 taactgctgc gggttgtcca tccagcgcga gctgaaatcc cagccagacg cagcggcaga
    15781 gcgcaggtcg cggtaaattt cagtggcagg tcgattcgga ttgcttttgg cggtggcaat
    15841 atcttccacc catgactctg gtcgtggcgt atcgtgatcg tcccagtagc ggttgagaag
    15901 ggtaccatcc tgaagtttga caacgcgttt ttcctgttgt ccggcttgca ggttttcaac
    15961 accgtccatc cagtaagcat attctttttg catttgcggc aggtattgct tcaacgcggc
    16021 atcgccttca tgctgcgcca gtaactctac catcagggca aagaagggcg gttgcgagcg
    16081 gcttaaatag taactgcggt tgccgttggg aatatgaccg taagtgtcta tttcatgagc
    16141 aaaattggcc accatatccg cgactttatc ccagtgaccg ctttcggcaa gtcctaacat
    16201 ggtgaagtaa ctgtcccagt aatatacctc gcgaaaacgt ccgcccggca cgacataagg
    16261 ttccggcagc ggtaacagag aatcccattt ttcggtgttt tcggtagaac gcggtaatac
    16321 cggccaaagt ccgtcaatat gttcgcgcag tgactgcccc tctggcggaa catatttctc
    16381 gccttctttc ggcagggtga aattgacgtt aacgaaatgg cgcagatcaa atccgctctg
    16441 gttttgctgc atccgataat cagcggatcg ctgttcggca cggcatcggc aaaggttttt
    16501 tggtccggaa aaagtttggc gttttgcaca tcattaaaca gcggccctaa taaaatatca
    16561 ggcggctgtg gtgttaccgg tgtttcttct gcctgcaccg atagcgcagc gaaacacaaa
    16621 aagatacagg ctggaattaa cgccattttt tgcgggcgag aaggtgcggg ggatttcatc
    16681 aatcattctc ctttggcgaa accgaataaa acggtattca agtatcagaa aaccttagtt
    16741 caggatcgca ctagctgcat gatcgaaatc tcattctgcg aactgtcagg cattttagaa
    16801 aagggaatta aagggataaa taacggcgaa atagagtgat caaataacgt ctgtttatta
    16861 gccagccagc ggcgttgggt tcgtgattag cgaagaaaaa tcatcataaa ttggtgaaaa
    16921 atataacagg tagttaaaaa ccattagtgc tgagtaaatt gccggatgac atcagaacga
    16981 tgccatccga acagtggctt aaccctgacg gttgaaacgt tgcgttttaa cgtccagcgt
    17041 tagcgtttct tctggttgta tcgcatacag tttctcaccc tgctggcaaa tccagccaat
    17101 ccccagttca cgggcgatta gggcgctgtg ggataccgga cttccggcgc taaggcagat
    17161 accttttaca accgccggat ccagttgcag tactgtggaa ggataaatgt tctccgccag
    17221 tagaatagtt ggcgagttaa actgcgggag ttcttctttc gtttgggtca ggtggaccag
    17281 ggtgcgatgc agaagatcgt ccacatcaat atagcgagct tgtagatatt catcatccag
    17341 ttgctggtat tgctggctaa gttctttaag aacttgctgc caggcatatt ctgccgtgca
    17401 atgttcatgc tgaaggagtt cgcttgccgc cgccagcagt tccggatcat ctaacagtgt
    17461 atggtgacca gaaaagattg cggcaatatc gtcaagcccg ctggcttctg ctttcgctgt
    17521 taacgtcatc agatctaata acgtgaagtc aatagcctgg cgtaatcgat cttgttcttc
    17581 ttccacggtc agggttgatt ttgcctgtac cgtatataaa actggttgat aataaaaggc
    17641 tttacccgaa acaggcggaa cgggacgcag agtaggtgga gcgacttcct ccgtttcacc
    17701 aaagttatct tcagccagct gacggaaagc gatcagtgcc tcttcagctt ctggcccttt
    17761 cgcaatcagg cgcagcgtat cgttatagcg aacttgtagt aacgcaatct ggttaatact
    17821 ctctggtgtg acgcatttgc cgtttttttc cagcaacata tcggcattaa atgtcgataa
    17881 ggtataaacc agccgggagg ccggacgtac atgcaggccg ttacggtttt ttatgaccac
    17941 cgccagagaa cgggcttctt catcgtacgc aggacatgtg tcagagattt cagtgtcgga
    18001 ggacggtaaa cccagttgtt cacgtttggc ttccagcgca tgcatagcgt caaagataac
    18061 tttgtcgata ttcgctcccg aggccgcgct gaccgttgct gccagtgtac cttcgaccaa
    18121 cggcgcagca cacaaacgta cttttgcggc gatcttggga gccagcaatt ccagcgcagt
    18181 ttcagcactc aataatgcgc tacccatatc catcatgacc agcacatggt cggcatcagc
    18241 aacagattcg atggcctcca tcactttgac ggcatcggta ccaataggat tttgtggatc
    18301 gtcaattccc gcggcaatgg cgattttaca actatcactc attaacatct gacgggctaa
    18361 ttcaccgaca ccttctccca gtcggctgct atgtgaaact atgaccaggt ttaccatcac
    18421 caattcctta ctcttttgcg gctaacgcca acatttgcat cataaacatc accgaggtcg
    18481 cgccgggatc ctggtgacca atactgcgtt caccgagata actggcgcgg cctttgcggg
    18541 cttgcatcgt aatcgtactt tgtgcagcgg attcggcgat gctactggca gcttcgagcg
    18601 ccaccggaac agagagattt tgctcgctgg actgacgtaa cgattccacc accggcaccc
    18661 acacatcaca catggtttta tcgccaggtt cggctttccc gcgactgatt acgccgtccg
    18721 cgccatcgcg gaacatctga taaagctctt ccagtgtcag gctttgccgt gcctgggtcg
    18781 cctgtgcggc gcggataaag aaggtaccga acagcggacc actggcacca ccgacgctgg
    18841 aaagcagcgt cataccggta ttcttgagaa tgaaaccgat atctttatct gcgatagcag
    18901 ggagtttttc caccactttg ctaaagcctc ggttcatatt tagcccgtgg tcagcgtcgc
    18961 caatttcgcg atccagtccg gtaagatact cgctctcggt gctgaaaata tcgccacaac
    19021 gagtgagcca gttaacaatt tgagttctgc tcagtgacat tgctttctcc taatttaccc
    19081 cagttaaggg ccggggtgtg gaccggggcg tcccagagtg ccagcgtttc gtcatcaact
    19141 ttcagtaagg tgattgagaa accggtcata tccagtgagg tgcagtacgc gccaattaaa
    19201 ttacgttcga tagtcaatcc cgcttgctgg caacgtgtgg tcaggcggtt atagacgccg
    19261 tacagctcag aaagcggagt tgcgccaaga ttgttaacca gcgcaatcac ccgatcgcca
    19321 gactggagcg gttgtttggt ttgttgttct tcctgccaac tgccttgttg ataatcccag
    19381 aaacgtaaag tgcgatggta tgagccattt cccagcaggg tgtcgaacat ttcatcgacg
    19441 gtttgatcaa gggaagagaa ggagcggcgg tcaatacccg gctcaccatg aatgccgacg
    19501 ccaaactcca tctcattatc cgccagggta aaagaaggtt tgcccgcggc aggaacggta
    19561 caggcaccga gagcgatacc tattgagtgg ccttgattat tcaacttacg ccccagttcc
    19621 gcacaggcgt ccagtgagtc gccacgctcc gccgctgcgc ctacgagttt ttcaattaat
    19681 acggtgttgg caacgccgcg tcgcccggca gtataaagac tgtcttttac cgcaacgtcg
    19741 tcatcaatga ccacagaggt cacttttacg ccgctatcgt gcagtaactc ggtcgctgtt
    19801 tcaaagttaa gaatatcgcc ggtgtaattt ttgataatca acagtacacc ttcgccgcca
    19861 tcaacttgca tggcgcattc aaagatttta tcgggcgtcg gtgaggtgaa aatttcgccc
    19921 ggacaggccc ccgaaagcat cccctgaccg atatacccac agtgcatcgg ctcgtgtccg
    19981 ctgccgccac ccgacagcag ggcgactttt cctgcaacag gggcatcagc tcgggtgaca
    20041 tacaccggat cctgatgcag tgtcagcgat ggatgcgctt tcgccagtcc tgccagttgt
    20101 tcgtccagta cgtcttgcac atcattgatc aattttttca ttattttgct ccagcaatta
    20161 cggtagggca tggatgatgt tcaacgacac ggcgaccact gactgccgat gaatccattg
    20221 tgcatcaggc aagggaaaag aaaattagcc caaattatgt ttcatagtga aacatatgct
    20281 ttaatgaatg ttccatattg aaacttttac gtgtattaat acttaaaatt gcgagccgga
    20341 acaccttttg tcataaggga tgcgggatat gagtggcgct tttaacaacg atggtcgggg
    20401 catatctccc ttaattgcaa cctcctggga gcgatgcaat aagctgatga aacgggagac
    20461 atggagcgta ccacatcagg cccagggcgt gacatttgct tctatttatc ggcgtaagaa
    20521 agcgatgctg acgctcgggc aggctgcgct ggaagatgcc tgggaatata tggcaccgcg
    20581 agagtgtgcg ctgtttatcc tcgatgaaac cgcctgcatt ctcagccgta atggcgatcc
    20641 gcaaaccttg cagcagctaa gtgcacttgg attccatgac ggcacgtatt gcgccgaggg
    20701 aattattggt acttgtgcgc tatcgttagc ggctatctct ggtcaggccg tgaaaacgat
    20761 ggccgatcaa catttcaaac aggcactctg gaactgggcc ttttgtgcaa cgccgttgtt
    20821 tgacagcaag ggccgattga cgggaacaat agcgctggcg tgtccggttg agcaaactac
    20881 cgcagctgat ttgccgttga cgttggcaat cgcccgcgag gtcggaaatt tactgctgac
    20941 ggacagtttg ctcactgaaa ctaaccgtca tttaaatcaa cttaatgccc tgttagaaag
    21001 tatggatgat ggcgtgatta gctgggacga gcagggtaat ttgcaattta tcaatgccca
    21061 ggcggcgcgg gtcttgcgcc ttgacgcgac ggcaagtcag ggacgggcaa tcactgaact
    21121 cttaacgtta cccgccgtat tgcaacaagc aataaaacag gcacatccgc tcaaacacgt
    21181 agaagcaacc tttgaaagtc agcatcagtt tattgatgcg gtgataaccc ttaaaccgat
    21241 aatagaaacg cagggaacca gctttatttt gttgctccat cctgtggaac agatgcggca
    21301 gttgatgacc agtcaattag gaaaagtcag ccataccttt gctcatatgc cacaggacga
    21361 tccgcaaacc cgccgcttga ttcattttgg tcgccaggcg gcgcgcagta gctttcctgt
    21421 cctgctttgt ggagaagagg gcgtgggcaa ggcactgcta agtcaggcaa ttcataatga
    21481 aagcgagcgt gctgcaggtc cttatatcgc cgtcaattgt gagttatatg gtgatgcggc
    21541 actggcggaa gaatttattg gtggcgatcg tacggacaat gaaaatggcc gtctgagtcg
    21601 gctggaactg gcgcacggcg gcacgctgtt tcttgaaaag attgaatatc tggcggtgga
    21661 gttacagtct gctttgcttc aggttatcaa gcagggtgtt atcacgcgac tggatgcgcg
    21721 gcgtttaata ccaattgatg tcaaagtgat tgcaacaacg accgcggacc tcgcaatgct
    21781 ggtggaacaa aatcgtttta gtcgccagct gtattacgcg ctgcatgcat ttgaaattac
    21841 catcccgcct ctgcgtatgc ggcgtggcag cattccggcg ctggtgaata acaaattacg
    21901 cagtcttgaa aaacgcttct ctacgcggct gaaaattgat gacgatgccc tcgctcgcct
    21961 ggtttcttgt gcatggccag gcaacgattt tgaactttac agcgtcatcg agaatcttgc
    22021 tctgagtagt gataatgggc gcattcgcgt cagtgatttg ccggaacatc tgtttaccga
    22081 gcaggcaaca gatgatgtca gcgccacccg cctttccacc agtctgtcat ttgcggaagt
    22141 tgaaaaagag gcaattatta acgcagccca ggtcacaggc ggtcgcattc aggaaatgtc
    22201 ggctttactt ggaatcggcc gcactacgct gtggcggaaa atgaagcaac atggcattga
    22261 tgcagggcag tttaagcgcc gggtatgaaa gacagaaacg atttctaata catcagagtg
    22321 atctatattt cattccggcg cacgctaaca tttttcagca tcgtttaagg gcttgtctat
    22381 cacgcactta aaagctgaag cgatatcctc cgttgacttg ctt
//
LOCUS       DAJVUN010000058        22422 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.058, whole genome shotgun sequence.
ACCESSION   DAJVUN010000058 DAJVUN010000000
VERSION     DAJVUN010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22422)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22422)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22422
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.058"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..301
                     /locus_tag="OQQ76_001837"
     CDS             <1..301
                     /locus_tag="OQQ76_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1968357.1"
                     /translation="SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE
                     LAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL"
     gene            317..1327
                     /gene="mglC"
                     /locus_tag="OQQ76_001838"
     CDS             317..1327
                     /gene="mglC"
                     /locus_tag="OQQ76_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HCS1968358.1"
                     /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN
                     ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT
                     MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP
                     ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE
                     AAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG
                     VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYAR
                     KK"
     gene            complement(1454..2689)
                     /gene="preA"
                     /locus_tag="OQQ76_001839"
     CDS             complement(1454..2689)
                     /gene="preA"
                     /locus_tag="OQQ76_001839"
                     /EC_number="1.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HCS1968359.1"
                     /translation="MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGV
                     VFKTIGFFTANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDK
                     VLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYC
                     RAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMP
                     IVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGA
                     ATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMGGLANNNIVPAEDLDRSYI
                     VYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGC
                     IDLGEVKFKKGEKEHPVTL"
     gene            complement(2683..3921)
                     /gene="preT"
                     /locus_tag="OQQ76_001840"
     CDS             complement(2683..3921)
                     /gene="preT"
                     /locus_tag="OQQ76_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreT"
                     /protein_id="HCS1968360.1"
                     /translation="MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDP
                     GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQ
                     RFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPG
                     GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEIGKTLTLEQLKAENRAVLVTVG
                     LSSGSGLPLFEHSDVEIAVDFLQRVRQAQGDISIPQSALIIGGGDVAMDVASTLKVLG
                     CQAVTCVAREELDEFPASEKEFTSAQELGVSIIDGFTPVAVEGNKVTFKHVRLPGELT
                     MAADKIILAVGQHARLDAFAELEPQRNTINTQNYQTRDPQVFAAGDIVEGDKTVVYAV
                     KTGKEAAEAIHHYLEGACSC"
     gene            complement(4115..4354)
                     /locus_tag="OQQ76_001841"
     CDS             complement(4115..4354)
                     /locus_tag="OQQ76_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2542 family protein"
                     /protein_id="HCS1968361.1"
                     /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY
                     VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR"
     gene            complement(4357..5076)
                     /gene="sanA"
                     /locus_tag="OQQ76_001842"
     CDS             complement(4357..5076)
                     /gene="sanA"
                     /locus_tag="OQQ76_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane permeability protein SanA"
                     /protein_id="HCS1968362.1"
                     /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY
                     RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM
                     RKDLIAAGVAPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM
                     GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED
                     AQGYPAVTPEQLLELQKKQGK"
     gene            complement(5226..6110)
                     /gene="cdd"
                     /locus_tag="OQQ76_001843"
     CDS             complement(5226..6110)
                     /gene="cdd"
                     /locus_tag="OQQ76_001843"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HCS1968363.1"
                     /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA
                     TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH
                     AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY
                     LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK
                     DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT
                     SATLKALGCHSIDRVLLA"
     gene            complement(6240..6935)
                     /locus_tag="OQQ76_001844"
     CDS             complement(6240..6935)
                     /locus_tag="OQQ76_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidB/LrgB family autolysis modulator"
                     /protein_id="HCS1968364.1"
                     /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF
                     LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA
                     MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV
                     FGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI
                     APFLFPIILAVMG"
     gene            complement(6932..7330)
                     /locus_tag="OQQ76_001845"
     CDS             complement(6932..7330)
                     /locus_tag="OQQ76_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HCS1968365.1"
                     /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML
                     ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV
                     STLVVFLVVSWSSQLVHGERKVVGQKGSEE"
     gene            7590..8536
                     /gene="dusC"
                     /locus_tag="OQQ76_001846"
                     /pseudo
     CDS             7590..8536
                     /gene="dusC"
                     /locus_tag="OQQ76_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311053.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
     gene            complement(8924..9007)
                     /gene="yohP"
                     /locus_tag="OQQ76_001847"
     CDS             complement(8924..9007)
                     /gene="yohP"
                     /locus_tag="OQQ76_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohP"
                     /protein_id="HCS1968366.1"
                     /translation="MKIILWAVLIIFLIGLLVVTGVFKMIF"
     gene            9231..10667
                     /gene="mdtQ"
                     /locus_tag="OQQ76_001848"
     CDS             9231..10667
                     /gene="mdtQ"
                     /locus_tag="OQQ76_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001583680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug resistance outer membrane protein
                     MdtQ"
                     /protein_id="HCS1968367.1"
                     /translation="MNRDSFYPAIACFPLLLMLAGCAPMHETRQALSQQTPAAQVDTA
                     LPTALKNGWPDSQWWLEYHDNQLTSLINNALQNAPDMQVAEQRIQLAEAQAKAVATQD
                     GPQIDFSADMERQKMSAEGLMGPFALNDPAAGTTGPWYTNGTFGLTAGWHLDIWGKNR
                     AEVTARLGTVKARAAEREQTRQLQAGSVARLYWEWQTQAALNTVLQQIEKEQNTIIAT
                     DRQLYQNGITSSVDGVETDINASKTRQQLNDVAGKMKIIEARLSALTNHQTKSLKLKP
                     VALPKVASQLPDELGYSLLARRADLQAAHWYVESSLSTIDAAKAAFYPDINLMAFLQQ
                     DALHLSDLFRHSAQQMGVTAGLTLPIFDSGRLNANLDIAKAESNLSITSYNKAVVEAV
                     NDVARAASQVQTLAEKNQHQAQIERDALRVVGLAQARFNAGIIAGSRVSEARIPALRE
                     RANGLLLQGQWLDASIQLTGALGGGYKR"
     gene            10720..11481
                     /locus_tag="OQQ76_001849"
     CDS             10720..11481
                     /locus_tag="OQQ76_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1968368.1"
                     /translation="MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTA
                     REVVSHGVRAEIVQLDLGKLPEGAQALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFD
                     EWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL
                     GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIA
                     SLVAWLCSEGANYTTGQSLIVDGGFMLANPQFNPE"
     gene            complement(11611..12189)
                     /locus_tag="OQQ76_001850"
     CDS             complement(11611..12189)
                     /locus_tag="OQQ76_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416640.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1968369.1"
                     /translation="MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLV
                     VLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFM
                     YGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
                     KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA"
     gene            12359..12934
                     /locus_tag="OQQ76_001851"
     CDS             12359..12934
                     /locus_tag="OQQ76_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014170891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
                     /protein_id="HCS1968370.1"
                     /translation="MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICA
                     FIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRHC
                     MVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKEEGLS
                     FSSSTLAIGVLVLEVLLALTVILWGYGYRLF"
     gene            13108..14040
                     /gene="pbpG"
                     /locus_tag="OQQ76_001852"
     CDS             13108..14040
                     /gene="pbpG"
                     /locus_tag="OQQ76_001852"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311048.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HCS1968371.1"
                     /translation="MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAM
                     IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY
                     SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR
                     FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMAIFSNPTYTLPFRNTNH
                     LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW
                     IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND"
     gene            complement(14078..15793)
                     /gene="dld"
                     /locus_tag="OQQ76_001853"
     CDS             complement(14078..15793)
                     /gene="dld"
                     /locus_tag="OQQ76_001853"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1968372.1"
                     /translation="MSSMTTTDNKAFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG
                     DALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTL
                     RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG
                     GSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH
                     DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ
                     QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT
                     DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL
                     LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD
                     EVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH
                     ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN
                     WQEVE"
     gene            15989..18286
                     /gene="bglX"
                     /locus_tag="OQQ76_001854"
     CDS             15989..18286
                     /gene="bglX"
                     /locus_tag="OQQ76_001854"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HCS1968373.1"
                     /translation="MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKK
                     MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTSQDIRAMQDQVMELSRL
                     KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD
                     VSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG
                     GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD
                     QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS
                     GKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
                     ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAV
                     GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAV
                     VGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA
                     ILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP
                     NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVMNTGKRE
                     GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD
                     AEPGKFNVFIGTDSARVKKGEFELL"
     gene            18538..19454
                     /gene="osmF"
                     /locus_tag="OQQ76_001855"
                     /pseudo
     CDS             18538..19454
                     /gene="osmF"
                     /locus_tag="OQQ76_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311045.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein OsmF"
     gene            19461..20618
                     /gene="yehY"
                     /locus_tag="OQQ76_001856"
     CDS             19461..20618
                     /gene="yehY"
                     /locus_tag="OQQ76_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehY"
                     /protein_id="HCS1968374.1"
                     /translation="MTYLRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQL
                     WPQTIWMLVGVGCAWLTACFIPAKKGSIFALILAQFVFVLLVWGAGKAATQLAQNGSA
                     LARTSLGSGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL
                     SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGEIFSLLNV
                     IQTVPSVALFGLLIAPLAALVTAFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVV
                     GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQIVGMAVIAALIG
                     AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLIDALFDLLIALLKVKRND"
     gene            20611..21537
                     /gene="yehX"
                     /locus_tag="OQQ76_001857"
     CDS             20611..21537
                     /gene="yehX"
                     /locus_tag="OQQ76_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter ATP binding
                     protein YehX"
                     /protein_id="HCS1968375.1"
                     /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL
                     KMINRLVEHDSGEIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL
                     QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE
                     PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN
                     PLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVRREERAEGEALAEEMTLRDALS
                     LFVARGCEVLPVVNTQGQPSGTLHFQDLLEEA"
     gene            21542..22273
                     /gene="yehW"
                     /locus_tag="OQQ76_001858"
     CDS             21542..22273
                     /gene="yehW"
                     /locus_tag="OQQ76_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehW"
                     /protein_id="HCS1968376.1"
                     /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE
                     SFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV
                     LAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLR
                     KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL
                     LVALAAIIADRLFERLVQALSQHAK"
     gene            complement(22254..22361)
                     /locus_tag="OQQ76_001859"
     CDS             complement(22254..22361)
                     /locus_tag="OQQ76_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohO"
                     /protein_id="HCS1968377.1"
                     /translation="MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG"
BASE COUNT         5365 a         5690 c         6012 g         5355 t
ORIGIN      
        1 ctccggtggt aatcagcaaa aggtgattat tggtcgctgg ctactaacgc aaccagaaat
       61 attaatgctc gatgaaccga cgcgcggtat tgatgtcggg gcgaagtttg aaatttatca
      121 gttaattgcc gaactggcga agaaaggcaa agggattatt attatctcct ctgaaatgcc
      181 tgagttgtta gggataacag accgtattct ggtcatgagc aacggtctcg tttccggaat
      241 tgtcgacaca aaaacaacaa cgcaaaacga aattctgcgt cttgcgtctt tgcaccttta
      301 agattagggg cttcccatga gtgcgttaaa taagaaaagt tttcttactt acctgaaaga
      361 gggcggtatt tacgtcgttc ttttagtttt gctggcgatt attattttcc aggacccaac
      421 atttttaagt ctgttgaact taagtaatat tctcacccag tcatcggtgc gtattattat
      481 cgcgctcggt gtggcagggt taattgtcac ccaggggacc gacctttctg cggggcgtca
      541 agtagggctg gcggcagtgg tggcagcgac attattgcag tccatggata acgccaacaa
      601 agtgttcccg gaaatggcga cgatgccgat tgcgctggtt attctgattg tctgtgccat
      661 tggtgcggtg atcggtttga tcaacggtct gattatcgct tatctcaacg tgacgccgtt
      721 cattaccacg ctcggcacga tgatcatcgt ctatggcatc aactcgctct attacgactt
      781 tgtcggggcg tcgccaattt ctggttttga cagtggcttc tctacctttg ctcagggctt
      841 tgtcgcgctg gggagtttcc gtctctctta catcaccttc tacgcgttga ttgcggtggc
      901 gttcgtctgg gtgttgtgga acaaaacccg cttcggtaag aacatttttg ccattggcgg
      961 taacccggaa gcggcaaaag tatctggtgt caacgtcggc ctgaacctgc tgatgatcta
     1021 cgcgttgtct ggtgtgttct atgccttcgg cgggatgtta gaagccggac gtatcggctc
     1081 tgccaccaac aacctcggct ttatgtatga actggatgct atcgcggcgt gcgtggtagg
     1141 cggtgtatcg ttcagcggcg gtgtggggac ggtgattggc gtggtgaccg gggtaattat
     1201 ttttaccgtc atcaactatg gcctgacgta tatcggcgta aacccatact ggcagtacat
     1261 catcaaaggg gcgattatta tcttcgccgt agcgctggat tcactgaaat acgcgcgtaa
     1321 gaagtgaaat gattgtggtc cgcattcggt cataaacgca cataacatca tgatctgtgt
     1381 ggttttgtag gccggataag gcgttcaagc cgcatccggc gacaggaacc aaatgccgga
     1441 tgcgtctctg gttttacaac gttaccgggt gttctttctc tcccttctta aacttcactt
     1501 ctccgagatc aatacaaccc accgggcaga cgtggccaca aagcagacaa cccacacatt
     1561 tctcggtatt acaatgcggt gtgcgggttt tctcgctcca ttccatcgcc tggtgaccgc
     1621 cgtcgtaaca ggaaatataa cagcgtccac agccaacaca tttatcaaga ttgatacggg
     1681 gatagacaat ataactgcgg tctaaatctt ccgccgggac aatattgtta ttcgccagac
     1741 ctcccatctc ctgcaacgaa tcaaatccct gatcggcgag ataatgcgac aacccgctcg
     1801 ccatatcttc tacgatgcga tagccgtact gcataatgcc ggtggtgacc tgtaacgttg
     1861 ctgcgccgag caataaaaac tccgccgcat cctcccaggt ttcaatgccg ccgataccgc
     1921 tgattgggaa atcgcgcagt tctggatggg tgcgcatttg ctgaatgaag cgcagggcga
     1981 tcggttttac cgctttaccg gaatatccgg aaatactcga ttttccgtta acgatcggca
     2041 taccgatttt ctgattaaga tcgatattgg tgatggattt aacggtgtta atcgccgcaa
     2101 tgccatctgc gccgccgcgc ttcgccgcca gcgccacttc gcacatatca ccgatattcg
     2161 gcgtcatctt cgccagcatt ggcagcgtgg aaccccgttt cactgcccga caatattttt
     2221 ctaccagctc cgggctttgc ccgacatcgc tacccatcgc atgagaagtc atttgcggac
     2281 aggagaagtt acactcgatc atatccgcgc cagcttcttg caccaggcgc gccagctcct
     2341 cccattgctg ctcattttcc cccatgatcg aagcgatcaa tactttgtcc gggtaatctt
     2401 ccttcagccg acgcagggcg gccagattct cttccaacgg atgttcagca atctgctcca
     2461 tatttttgaa gccgataaaa ccggtatctt ctttcaccag atgatcaaaa cgcggcgaga
     2521 cttcgttggc ggtaaaaaag ccgatcgttt taaacaccac accgccccaa cctgtgtcgt
     2581 aggctttggc acacatctca tagcagttgc ctaccggcga agaagagagg cagaacgggt
     2641 tgggaaactt cacgccgcaa aaagtaatcg aaagatcttt cgttaacatg agcaagctcc
     2701 ctctaaatag tgatgaatcg cctcggcggc ttctttcccg gttttcacgg catagaccac
     2761 ggttttgtca ccctcaacaa tatcgcccgc agcaaagact tgcggatcgc gggtctggta
     2821 attttgtgta ttgatagtgt tacgctgcgg ctctaactcc gcaaaggcat ccagtctggc
     2881 atgctgaccg acggcgagaa taattttatc tgccgccatc gtcagttcgc ccggtaaccg
     2941 tacatgctta aacgtgactt tattgccttc cacggctact ggcgtgaatc catcgatgat
     3001 cgaaacgccc agctcttggg cgctggtaaa ctctttttcg cttgccggaa actcatctaa
     3061 ctcttcacgc gctacgcaag ttaccgcctg acagccgaga actttcagcg tgctggctac
     3121 gtccatcgcg acatcaccgc caccgataat taatgcgctt tgtggaatgc tgatatcgcc
     3181 ttgcgcctgt cgtacacgtt gcaggaagtc gacggcaatc tcaacgtcgc tatgctcaaa
     3241 cagcggtagc ccggaaccgc ttgataaccc cacggtgacc agtaccgcgc ggttttccgc
     3301 tttcagttgc tccagggtga gtgttttacc gatttcgtta ttgcacttaa tggtcacgcc
     3361 cattttttca atacgggcga tctctgcatc cagcactgat tgcggtaacc ggaattgcgg
     3421 aataccgtta cgcaaccagc caccggggtg cgcttctttc tcataaatcg tgacgtcata
     3481 accctggttt gtcagtgtca cactggcctg caatccggca ggacctgcgc caataatcgc
     3541 gactttgccg agcgttttag taccgggctg ataaatttcc atcccggttt gttgttcaaa
     3601 atcagtaaca aaacgctgta agcggccgat atcaatggga gcatcaacac cggcacgggt
     3661 acaaccgctt tgacataatt tctccgtcgg gcacactctg gcacaaacgg caccgagggc
     3721 attattttcg cgaattgtct cggcagcgcc tttaaaatta cgaaagtaga ttgagcgaat
     3781 aaatttcccc ggatcggtct gtgccgggca agcctgacta cagggagcgt catgacataa
     3841 taaacagcga gaggcttctt taatcgccag taaaggcgta aaagccggag tgagttcatc
     3901 cagataattt tgttgcggca tgtgatcttc cttaatgcta tgagtaatta aggcgaacgc
     3961 taaataaata ttgcgtgctg atattaaggc tatgcgcgtg gggaaattta aactgtgaaa
     4021 ggattcacaa atagctgcgg ttcagaatgt tatatccgca gcttattgag tgaagtaata
     4081 attattctca ataattaaca gaaaagagaa aatattaacg atagaaaata agataaacaa
     4141 tcatgccgat agataaaatc ccgaagccga tatatgccac catataagcg aaaaagagtc
     4201 cgggattttt tgctcgccag acatacaccg gttccggtgc atttttaacc cgtttatcaa
     4261 tcgcgcctgc gcgccagcct ttccatgctt cgcggaaaca aaatatcggg ataaggaaaa
     4321 aaacggcaac gacaaaaaac tgctgtacat ccataactac tttccttgtt tcttttgtaa
     4381 ttcaagtaac tgttcgggtg tgacggcggg atacccctgc gcatcttccg gcacctggtg
     4441 catagccgga atagggacca gcggccctaa aaaacgcggt tcacgtttaa aaatataaag
     4501 gtcagccagc gcaccgaaac gggcggcaaa ttcgcgaata cgtactgaca gcatatcttt
     4561 cggtgacggt acggcataac actgagcctg aatccccata tgcagcgcaa taaataatgc
     4621 ccgctcacag tggaaacgtt gggtgataat aatgaaatca ttagtatcga aaactttgcg
     4681 tgtacgcact atggaatcca gcgtacgaaa gcctgcgtaa tcgagaacaa tatctgatgg
     4741 ggcgacacca gcggcgatta aatctttgcg catggtcatc ggctcattat aactttgcaa
     4801 tgcgttatcg ccgctcagta atagataatt taccttaccg ctgttatagg cattaatcgc
     4861 tccttgaatg cggtagcgat aatactgatt aattacgcca gtacgataat attttgctgt
     4921 tccgagcacc acaccgacct ggcggtaggg gagatcctgc aattcgtcgt agatataagg
     4981 cgcggttttc cagctcatcc agcgatcgag gccgagcaca gtcaacagca gcaagccgat
     5041 aaggactaac aggctgagga acacgcgctt taacatgcag gagactcgat ctaagggaaa
     5101 tttccatcag gctactttac ccgctggttt tgcgcaagaa acggcaaact gtttgccggg
     5161 attttcgaca ccaggagagg gctggcaagc cggacaaggc gttcacgccg catccggcac
     5221 caggcttaag cgagaagcac gcggtcgata ctgtgacagc cgagcgcttt cagcgttgcg
     5281 gaggtggcat cccactgaat caacggcgca tcggcttttt ctgccagaac cgcgcgctgg
     5341 atatccgggt aatcataacc cttgagattc aacagaatta acgctccctg caacggtggc
     5401 agagtcgggt tgaatgcggc gttttcagcg tagctgccgc tgaaaatacg accgtcttta
     5461 cattccagcg cgacaccgct tggcgactta ctgtaaggca tgtgcgaacg gtttgccgcc
     5521 gcaatcgccg cctgagaaag cgcatcacca gtcagcgcat agccgtgatc ctgctcgtcc
     5581 atcagcagcg ttttaatctc cagatctttc ggcccaaagg catccggcag atagtcacgt
     5641 agcgcgtgtg cctcgcggcc cggcagatga atacgcagat ccagaccgct gttcagttca
     5701 ttcataaact gacggcagtg accacaaggc gtgtagttaa cggtgatggc tgcaagcgct
     5761 ttttcaccac tcaaccaggc gtggctgatc gcgctttgtt cggcatgaac ggtttgctgc
     5821 attgtcgcac caataaattc catattggca ccaaaatacc aggttccgct cacaccgcgc
     5881 gcaattgcgc caacattaaa attcgacaat ggcgtacgcg cacaggccgc cgccagcgga
     5941 agtagtgcga atgccagcgc gtcttcgtcc agccccgttg cgctcttcag cgatgagact
     6001 tgctccccgg tcaacaaagc ggggaagtac ttgtctgcca gaataggttc cagtgcagat
     6061 tgcaagttat ccgcaagttg ggcaaaagcg gtttgaaaac gtggatgcat ggcgttgcct
     6121 cataatcatg taatgggata atagtttacg aacccgttat ggctttatat gtgatctgaa
     6181 tctcattaat tatgcaacgc gtgaaactta catcaaaaat gcgcgacgca tcgcaaattt
     6241 tagcccatta ctgccagaat aatcgggaaa aggaacggtg cgatcagcga agtaattatc
     6301 ccgcataaca ccagcgctag cgaactaaat gcaccttcct gataatccag ctcggcgcag
     6361 cgcgctgtac cgagggcgtg cgaggcagtc cccattgcca gaccgcgcgc agctttggta
     6421 cgaatacgca tcgcattaag caatgtatgg ccaaataccg cgccgaggat gccgacgaaa
     6481 atcacgcaaa ctgcgctgat tgccggaata ccgccaatac tgccgccaac cgccattgca
     6541 ataggcgtgg tgactgattt cggcaggatt gacgcggcga tttccggtga agcgcccatc
     6601 aacaatgcca cggaagtccc cgtcaccatc gcaaccacgc tgccgataaa acagatggtg
     6661 atgatcgatt tccagcgcgc gcggatctgg tgtagctgct catataaagg ataggccagc
     6721 gcgacgaccg ccggttgcag cagatcgttt agcacttcgc tacctttaaa gtaactgtcg
     6781 taagagatgc cggtcagcat taaaaaagga atgatcacca ccattgctac cagcaacggg
     6841 ttaagcaggg gaaacttata ccgtgccgcc agtttgcggg cggcaaaaaa gacaatcaac
     6901 gtcagcggta atgaccacca gatattcgcc atcattcttc tgatcctttc tgacctacga
     6961 ctttacgttc gccgtgtacc agttgtgaac tccagctcac caccagaaaa accaccagcg
     7021 tactgacagc acaggaaacc actaccgggc caaactgcgc gcggagcaaa tcaaaatatt
     7081 gcatgacgcc tacgccaatc ggcacaaaca atagcgccat atagcgaatc agtacgtagc
     7141 accccggatt gacccatttt gccggaagaa tttgcaaggc cagcaggaca aacaggatca
     7201 gcatcccgat gatgctgccc ggaatggtta ccggtagcag ggaagcaatg aaaatgcctg
     7261 catacaggca ggcataaatc aggacgaaag cgcgtaaata ttgccagata atgttcagtg
     7321 tcttactcat aatcaacacc ccagatgaga tggattcatc atacaattaa ttcgtaaaac
     7381 gtgctaccga tcacattaag aaatcagcgc ttattttttc gctccccggc attacgcaat
     7441 gcgcaacgaa ctcaggcata catcaagcat agagagggat tacagtttgc agcaatccct
     7501 ctttgcagac ctttaatccg ttgaccatag gcgctaacat ggcgcctcat ttttttgcgg
     7561 gtgaagatat gcgtgtgtta ctggctccga tggagggtgt gcttgctccg atggagggag
     7621 tgcttgactc tctggtgcgt gaattgctga ccgaagttaa cgactacgat ctgtgcatca
     7681 ccgagtttgt ccgcgtggtg gatcaactgc tgccggtaaa agtttttcat cgcatttgcc
     7741 ctgagctaca aaacgccagc cggacaccat ccggtacgct ggtgcgcgtg cagttgttgg
     7801 gtcagttccc acaatggctg gcagagaacg ccgcccgtgc ggtggaatta ggttcctggg
     7861 gcgtggatct caattgcggt tgcccgtcga aaacggtcaa cggtagcggt ggtggggcga
     7921 cgttactcaa agatcctgaa ctcatctacc agggtgcaaa agcgatgcgt gaagctgtac
     7981 cggcgcattt gcccgtcagc gtgaaagtgc gtctgggctg ggacagcggt gagaagaagt
     8041 ttgaaatcgc cgatgcggtt caacaggctg gtgctacgga gctggtggtg catggacgga
     8101 caaaagagca gggttaccgc gcggagcata ttgactggca ggcgattggc gagattcgcc
     8161 agcggctgaa tattccggtg attgccaacg gcgaaatctg ggactggcag agtgcgcaac
     8221 aatgcatggc gatcagcggc tgcgacgcag gattggtcgc ggggcgctca atattcccaa
     8281 cctgagccgg gtggtaaaat ataacgaacc gcgaatgccg tggccggagg tggttgcttt
     8341 gctgcaaaaa tatacccgtc tggaaaagca gggcgatacc gggttatatc acgtagcgcg
     8401 gattaaacag tggttgagtt atttgcgtaa agaatacgat gaagcaacag aattatttca
     8461 gcatgttcgg gtgttgaata attcccatga tattgcaagg gctattcagg caattgatat
     8521 cgataagctg cgataatagt ggaatcgcag cttatcagag acaatgaatc gcttattcag
     8581 cttcatcatc ttgttgcgct cctttcatga actaagccac atattgccac tggcgcaagg
     8641 tgcgcgcaga gggaggacaa tcgcctcctc cccctgcacc cccgggctct ggcgaacaaa
     8701 atcgccgctg cgcggtacct tcagcttatc cccttcggct accgggtcgg gcgcgaggta
     8761 acgtccttgt aagacgcgcc ctcagcccac atccatgtgg gctgccccgg ccttcgggga
     8821 acgcttcagc gattttgacg ccaccaacac cggagctgtt tgcaaatcaa gtacacaaaa
     8881 tatctagttc ctgacctgac aacttatatg ccatatctga tttttaaaat atcatcttaa
     8941 atacgccagt caccaccagt agcccaatca ggaaaataat caatacagcc cagagtataa
     9001 ttttcattgg cgttccttta tttgtgagtg ctgaataagt ataggaaaaa acgaagccct
     9061 tcgctgtcat ttataagtga ttaagataaa tcggagaata tcattcactt agtctatatt
     9121 tttctgggta tgtcgtttta ttgctactga tgtattgcca cgcgaaacta aaaaatatat
     9181 cgcaacacac ggtaatctcc gcgcaccgtt tcttacctga ttattccccc atgaatcgtg
     9241 attcctttta tccagccatc gcctgttttc cgctgttact gatgctggcc gggtgtgcgc
     9301 ctatgcatga aacccgccag gcgttaagcc agcaaacgcc cgctgcacaa gttgacaccg
     9361 cattacccac ggcgctgaaa aatggttggc cagacagcca atggtggctg gagtatcacg
     9421 ataatcagct cacttcatta attaacaatg cactacagaa cgcaccggat atgcaggtgg
     9481 ctgaacagcg cattcagcta gctgaagccc aggcgaaggc agttgccact caggatggtc
     9541 cgcagatcga cttttcggcg gatatggagc ggcaaaaaat gtcggcagaa gggctaatgg
     9601 ggccgtttgc tctgaacgat ccggccgcag gtacgaccgg tccgtggtac accaacggaa
     9661 cttttggctt aacggcgggc tggcatctcg atatctgggg aaagaatcgg gcggaggtta
     9721 ctgcccgcct gggtacggtt aaagcacggg cggcggaacg cgagcaaacc cgccaattgc
     9781 aggctggcag cgtagcccgc ctgtactggg agtggcaaac ccaggcggcg ttaaacacgg
     9841 tcttgcagca aatagaaaaa gagcagaaca ccattatcgc gaccgatcgc cagctatatc
     9901 agaacgggat tacttcttca gttgacggtg tggaaaccga tattaatgcc agcaaaaccc
     9961 ggcagcagct caacgatgtc gcggggaaaa tgaaaattat tgaggcacgg ttaagcgcac
    10021 ttacaaatca ccagacaaag tcattgaagc ttaaaccggt cgcgttgccg aaagtggcaa
    10081 gccagcttcc tgatgaactg gggtactcct tactggcccg gcgggcagat ttgcaggcgg
    10141 cgcactggta cgttgagtca tcgctaagca ccattgatgc ggcaaaagcg gcattttatc
    10201 ctgacatcaa cctgatggcc ttcctgcaac aggatgcgtt gcacttaagc gatctgttcc
    10261 gtcattccgc gcagcaaatg ggcgttacgg caggcctgac gctacctatt ttcgatagtg
    10321 gtcgtcttaa cgccaatctc gatatcgcaa aagccgaaag caacttgtct atcaccagct
    10381 acaacaaagc ggtggttgaa gcggtgaatg acgtggcgcg ggcagccagt caggttcaga
    10441 cacttgcgga gaaaaaccag catcaggcgc aaattgagcg cgatgccttg cgtgtggtag
    10501 gtcttgcgca ggcgcgcttt aacgcgggca tcattgctgg ttcccgcgtc agcgaagcca
    10561 gaatccccgc gctgcgtgag cgggccaatg gcctgttatt gcaagggcag tggctggatg
    10621 cttccattca actcactggt gcgttgggcg ggggttacaa acgctgatga tatgcgcctt
    10681 ctatacttaa cgtttattca gcgttaagtg gagaactcga tggcacaggt tgcgattatt
    10741 accgcctccg attcggggat cggcaaagag tgcgcgttat tactggcgca gcaggggttt
    10801 gatattggta ttacctggca ctcagatgaa gaaggggcaa aagatactgc gcgtgaggta
    10861 gttagccacg gcgtacgtgc ggagattgtg cagctggatc tcggtaaact gccagaaggt
    10921 gcgcaggcgc tggagaaact cattcaacgg ctggggcgta ttgatgtgct ggtgaataat
    10981 gcgggcgcaa tgaccaaagc gccgtttctt gatatggctt tcgatgagtg gcgcaagatt
    11041 tttaccgttg atgtcgatgg tgcattttta tgctcacaaa ttgcggcccg ccagatggtg
    11101 aaacaagggc agggcggtcg catcatcaac attacgtcgg tacatgaaca tacgccgctg
    11161 ccggatgcca gcgcctacac agccgctaaa catgcgctcg gtgggttaac caaagcgatg
    11221 gcgctggagc tggtcaggca taagattttg gtgaacgcag tcgcgcctgg ggcgatcgcc
    11281 acgccaatga atggcatgga tgacagcgac gtgaagcccg acgcggagcc ttcgattcct
    11341 ctgcggcgtt ttggcgcaac gcatgagatt gccagcctgg tagcgtggct gtgctcagag
    11401 ggcgcaaatt acaccaccgg gcagtcgttg atagtggatg gcggctttat gttggcgaat
    11461 ccgcagttca acccagaata gcgcagtgag gtgcgtggtt atttcaatgg gtaaaatttt
    11521 ggtaggcatg ataagacgca caagcgtcgc atcaggcatg gtgcaccgga tgtcggatgc
    11581 ggcgcgaacg ccttacccag ggcaatggtt ttacgcctga tgatccggct ttttcttccc
    11641 gcgccgtttc agccaccagc gcacgcccac caccagaacc acgaccagaa tcaaccagac
    11701 ccagtgcttc aaatgctggt cgagattgtg caaccacggc gcaatcacct gaccaccagc
    11761 gtaaccaata gtggtaaaaa tcaacgccca ggcaaatgcg ccgagaatat tcagcggcag
    11821 aaagattttc ggcggcagct ggctggcacc aatcagcgtc gggccaatca cccgaaagcc
    11881 atacataaag cgcgtaccaa tgacaaacag atacggatgg cgttggataa gtttctgcgc
    11941 ccgctcaatt ttatcctgat gtttcgagaa acggcgtaac agcttgccgc caaaccgccg
    12001 tccgcacaga taaagcacct ggtcgccaat catgccgcca agcgccacag aaagtaccac
    12061 cagcgggaac tttaatagcc cctgatgtgc cgcaacgcct cccagcaaag tcacggtttc
    12121 accttccgcc aggctaccga tcaccagcgc ggcataacca tattgtgaga tgagtgtatt
    12181 gagatccata ggccagtctg tctccctttg gttgcctgta agcatacacc ctggaaatca
    12241 ttcacgctga aaaaggacat acatcagacg gtgcaaatta catggatgaa caaaaaataa
    12301 ccacaagctg acttatactt gaactgtcag gttcatgaac tcacaacaag ggggcggtat
    12361 gagccatgtc tggggactgt tttcccatcc cgatcgtgaa atgcaggtga ttaatcgcga
    12421 aaacgaaacg atttctcacc attacaccca ccacgttttg ctgatggcgg cgattccggt
    12481 gatttgcgcc ttcattggca ctacacagat tggctggaat tttggcgatg gcactatcct
    12541 gaagttatcc tggtttaccg gactggcgct ggctgtcctg ttttatggcg ttatgctggc
    12601 tggggttgcg gtaatggggc gggtcatctg gtggatggcg cgtaattatc cgcagcgtca
    12661 ctgcatggtc ttcgcgggct acgttgcaac tccgctgttt ttaagcggtc tggtggcgct
    12721 ttatccgctg gtctggttgt gtgcgctggt cggcacggtg gcgctgtttt acaccggcta
    12781 cctgctttac cttggtattc cgagcttcct gaatatcaac aaagaggaag gccttagctt
    12841 ctctagttcg acgctggcga ttggcgtgct ggtactggaa gtgctgctcg ccctaaccgt
    12901 tatactatgg ggctacggtt atcgtttgtt ctagaaagtt ctttgacgtt gcattgctgg
    12961 cgtaagtgtc agcaatgcag catttcctca cgattctcct ttgacgatcg cactttttgc
    13021 tcgttatgat ggcgtcgcta gcctcagtaa atccttactc cggcggtgcg caacccgtgc
    13081 gcgtgaacca ctatctgaat gctcatcatg ccgaaatttc gagtttcttt atttagcctg
    13141 gccctgatgc tggctgtgcc tttggcaccg caggccgttg cgaaaacggc agccgctacc
    13201 accgcttcac aaccggaaat tgcctccggt agcgcgatga ttgttgatct gaataccaac
    13261 aaagtgatct attcgaacca cccggatctg gtgcgtccga ttgcgtctat cagcaaatta
    13321 atgaccgcga tggttgtgct ggatgcacga ctgccgctgg atgaaaaact aaaagtggat
    13381 atcagccaga cgccggagat gaaaggggtc tattcgcgcg tacgactgaa tagcgaaatc
    13441 agccgtaaag atatgctgtt gctggcgctg atgtcttcag aaaaccgcgc ggcggcaagc
    13501 cttgcgcacc attatcccgg tggttacaaa gcctttatta aggcaatgaa tgcgaaagcg
    13561 aaatcgctcg gaatgaacaa cacgcgcttt gttgaaccta ccggattgtc ggtgcataac
    13621 gtttcaactg cccgtgactt aaccaaactg ctcattgcca gcaaacaata tccgttgatc
    13681 gggcagttaa gtactacccg ggaagatatg gcaatcttct ctaacccgac gtatacgctg
    13741 ccgttccgca atactaatca tctggtgtat cgcgataact ggaatattca gttaaccaaa
    13801 accggcttta ccaatgcggc gggccattgt ctggtgatgc gtacggttat caataataaa
    13861 ccggtggcgc tggtagtgat ggacgcgttt ggcaaatata cccattttgc cgatgccagc
    13921 cgcctgcgta cctggattga aaccggtaaa gtgatgcctg tgccggcagc agcgttgagc
    13981 tataaaaaac aaaaagccgc ccaaatggcg gcggcggggc agacggcaca gaacgattaa
    14041 gtgaattcgg atggcgatac tctgccatcc gtaattttta ctccacttcc tgccagtttt
    14101 tccgtttact ggttttaccg atccccggat tcatgctgtt ggtcggatcg ttctcgcgat
    14161 agaacttctg caacgtctcc ggtgctttat acaaatgacc gacgttatgc tcggcagggt
    14221 actgcgcgcc gcgctgctgt agcagttcca gcatctgttc ttttaacgca tgcacatcca
    14281 cgcctttttt cactatgtaa tcctgatgga agacatagca cataaaatgg ccgtaataga
    14341 gcttgtgcac cagctggctg tcgatctccg gcggtaaatg ctcataccac tcggtgtcgt
    14401 tacgccgcag agcgatatcc aacgccagaa tgtcttcgac ttcatcggaa tgcaccgcct
    14461 gataacgaat tgctgcgccc gcagcggcga aacggtgtaa aaacgctttg ctgccttcct
    14521 ccggcgtaca gacaaagaaa tcgccttcgg cctgtttgaa ataatctacc agccacgatt
    14581 tggcttcacc gacgccatcg cccgccattt ttaacagcag atgatgctcg tatttatcgc
    14641 gccagttttt catgcgcggc ggtaaatggc tggggaacag gtgaccgaat ttttgcatcg
    14701 cacggtcagt aaaatgcgga cggaagaatt tcactttctc cagcatcgca tcggtgcgtc
    14761 ccttgagatt aaagaagaac ggcatcttgt cggtgcctaa cttatcaatc atcaggaagg
    14821 tgtctttgcc gtatttttcc gcaatatcgt agatatcccg gtgcatatat tccccggcaa
    14881 ccggcagatt ttcgaagtta gccagaatat gacggcggat ttcggtcagc acttccggct
    14941 ggttggtgcc gatataaaac acctgctgat ttttttccgc ctcgaaggta tcaagacgta
    15001 ctgcaaagac ggccagcttc ccggcgcaac cagaagattc aaataaccga tccggatcgg
    15061 cgttataacg tgcgggcgtg tcggcttcaa tatcacgaac gcggtggaca tagtcataat
    15121 cgtgggcgtg acgaccatcg tgacgcacat cgtcatcttt gatgcgatca tcatccagct
    15181 tgctaaggat ctgctccggc gtttcgccca gatcaatccc cagatggttc accagcgtca
    15241 gtttgccgtc ttcatttata cgcgcgaata acgacatttc ggtatacgcc gggccacgtt
    15301 gcaccagcga gccgccggag ttgttacaaa taccaccgat gaccgatgcg cctatacacg
    15361 atgatccaat cactgagtgc ggttcgcgtc ccagcggttt gagggctttt tccagcgaat
    15421 agagcgtggt gcccggatag gccagcacct gttcgccctt gccgagaacg tgcagcttgt
    15481 cgagacgcag ggtgctgatg atcacgatat cgcgatcata gtcgttaccg tttggcgtcg
    15541 atccttcggt caggcctgta ttggcagcct gcatcagaat aattttgtcg gcggtgacgc
    15601 aggctttcag cacccgccac aattccagta gtgagccagg gaaaacgaca gccagcgcgt
    15661 cgccctgacc agaacggaag cccttgcgat agcgggccgt ttttgcggga tcggtgagca
    15721 ggtgtgaatg accgaccaga cgggcaagtt cattcaaaaa ggctttatta tcagttgttg
    15781 tcatggaaga cattttccac tccttgtggt ggggaaaaaa tatcacaaac tagaatagcg
    15841 ccttgtatga caattcagcg agtgaatatt ttgaaaattc agacaataaa ctgagcattc
    15901 tttttctctc tccatcatgc ttatggcaaa ctacggtttt tgcatcattt tcgctgcatc
    15961 gtcgggcaac agaggaagaa aaatccatat gaaatggcta tgttcagtag gaatcgcggt
    16021 gagtctggcc ctgcagccag cactggcgga tgatttattc ggcaaccatc cattaacgcc
    16081 cgaagcgcgg gatgcgttcg tcaccgaact gcttaagaaa atgacagttg atgagaaaat
    16141 tggtcagctg cgcttaatca gcgtcggccc ggataacccg aaagaggcga tccgcgagat
    16201 gatcaaagac ggtcaggttg gggcgatttt caacaccgta accagtcagg atatccgcgc
    16261 catgcaggat caggtgatgg aattaagccg cctgaaaatt cctcttttct ttgcttacga
    16321 cgtgctgcac ggtcagcgca cggtgttccc gattagcctc ggtctggcct cgtcttttaa
    16381 cctcgatgca gtgaaaacgg tcggacgtgt ctctgcttat gaagcggcag atgatggcct
    16441 gaatatgacc tgggcaccga tggtcgatgt ctcgcgcgat ccgcgctggg gacgtgcttc
    16501 cgaaggtttt ggcgaagata cgtatctcac ctcaacaatg ggtaaaacca tggtggaagc
    16561 gatgcagggt aaaagcccgg cagatcgcta ctcggtgatg accagcgtca aacactttgc
    16621 cgcatacggc gcggtagaag gcggtaaaga gtacaacacc gtcgatatga gtccgcagcg
    16681 cctgtttaat gattatatgc cgccgtacaa agcggggctg gacgcaggca gcggcgcggt
    16741 gatggtggcg ctgaactcgc tgaacggcac gccagccacc tccgattcct ggctgctgaa
    16801 agatgttctg cgcgaccagt ggggctttaa aggcatcacc gtttccgatc acggtgcaat
    16861 caaagagctg attaaacatg gcacggcggc agacccggaa gatgcggtgc gcgtggcgct
    16921 gaaatccgga atcaacatga gtatgagcga cgagtactac tcgaagtatc tgcctgggtt
    16981 gattaaatcc ggtaaagtga cgatggcaga gctggacgat gctgcccgcc atgtactgaa
    17041 cgttaaatat gatatggggt tgtttaacga cccatacagc catctcggtc cgaaagagtc
    17101 tgacccggtg gataccaatg ccgaaagccg cttgcaccgc aaagaagcgc gtgaagtggc
    17161 gcgtgaaagc ctggtgttgc tgaaaaaccg tctcgaaacg ttaccgctga aaaaatccgc
    17221 aaccattgcg gtggttggcc cgctggcaga cagcaagcgt gacgtgatgg gaagctggtc
    17281 ggcggcaggt gttgcagatc aatccgtgac cgtgctgacc gggattaaaa atgccgtcgg
    17341 tgaaaacggt aaagtgctgt atgccaaagg ggcgaacgtt accagtgaca aaggcattat
    17401 cgatttcctg aatcagtatg aagaagcggt caaagtcgat ccgcgttcgc cgcaagagat
    17461 gattgatgaa gcggtgcaga cggcgaaaca atctgatgtg gtggtggctg tagtcggtga
    17521 agcacagggg atggcgcacg aggcctccag ccgtaccgat attactattc cgcaaagcca
    17581 acgtgacttg attgcggcgc tgaaagccac cggtaaaccg ctggtgctgg tgctgatgaa
    17641 cgggcgtccg ctggcgctgg tgaaagaaga tcagcaggct gatgcgattc tggaaacctg
    17701 gtttgcgggg actgaaggcg gtaatgcaat tgccgatgtg ttgtttggcg attacaaccc
    17761 gtccggcaag ctgccgatgt ccttcccgcg ttctgtcggg cagatcccgg tgtactacag
    17821 ccatctgaac accggtcgtc cgtataatgc cgacaagccg aacaaataca cttcgcgtta
    17881 ttttgatgaa gctaacgggg cgctttatcc gttcggctat ggtctgagct ataccacttt
    17941 caccgtctct gatgtgaaac tttctgcgcc gaccatgaag cgtgatggca aagtgacggc
    18001 cagcgtgcag gtgatgaaca ccggtaaacg cgaaggggcc acggttgtgc agatgtactt
    18061 gcaggatgtg acggcttcca tgagtcgtcc ggtgaaacag ctgaaaggct ttgagaaaat
    18121 caccctgaaa ccgggcgaaa ctcagaccgt tagcttcccg attgatatcg aggcgctgaa
    18181 gttctggaat caacagatga aatatgacgc cgagcctggc aagttcaatg tctttatcgg
    18241 cactgattcc gcacgcgtta agaaaggcga gtttgagttg ctgtaatgct ttagtaaggg
    18301 cgtgacattt gcgccctttg cctgatgttc atatcttaac ttgctgaatt ttcgcccttt
    18361 gtaggccgga taaggcgctc gcgccgcatc cggcaggaaa cgccggaccg aatatgcctc
    18421 ttaagtattt atctgattct gcaactgaat ccgtccgctc aggctaatcc cgccattatc
    18481 aactatgctt ttctcttaat tcgctgaaaa caacagtaaa agaatgagga aagcatcatg
    18541 ccactctcaa aggtctgggc aggttcactg gttttgttgg cagccgtgag cctgccgctg
    18601 cacgcggctt cccccgttaa agtcggttca aaaatcgata ctgaaggcgc gctgctcggc
    18661 aatatcattt tgcaggtact ggaaagccac ggcgtaccga cggtcaataa agtgcaactc
    18721 ggaacgactc ctgtggtgcg cggggcgatt acttccggtg aactggatat ctatccggaa
    18781 tataccggca atggcgcgtt tttctttaaa gatgaaaacg atgcagcgtg gaaaaacgcg
    18841 cagcaaggtt acgagaaagt caaaaaactc gatgcagagc aaaacaagtt aatctggctg
    18901 acgcccgcac ctgcaaataa cacctggacc atcgccgtgc gtcaggatgt ggcagagaaa
    18961 aacaaactca cttcgcttgc tgacctgagt cgttatctga aatagggcgc accttcaaac
    19021 tggcagcctc ggcagagttt atcgaacgcg ccgatgcctt acccgcgttt gaaaaagcct
    19081 atggctttaa gctcggtcag gatcagttgc tgtcactggc tggtggcgac acggcggtga
    19141 cgattaaagc cgctgcccag caaacttctg gcgttaatgc cgcaatggct tacggcactg
    19201 acggtccggt cgcggcgctg gggctgcaaa ccttaagcga tccgcaaggc gtgcaaccta
    19261 tctacgcgcc tgcaccagtg gtgcgtgagt cggtgctgaa agagtatccg caaatggcac
    19321 agtggctaca gccagtcttc gccagcctcg atgcaaaaac attgcagcaa ctgaatgcca
    19381 gcattgcagt ggaaggactg gatgccaaaa aagtggctgc cgactacctg aaacaaaaag
    19441 ggtgggcgaa gtaatttccc gtgacttatc tacgtattaa tcctgttctg gcgctgctgc
    19501 tgttgctgac ggcaatcgca gcagcgctgc cgtttatcag ctacgcgcct aatcgtttag
    19561 tctcgggtga agggcgtcat ctctggcaac tgtggccgca aacgatctgg atgctggtgg
    19621 gcgttggttg cgcctggctg acagcctgtt ttattcccgc taaaaaaggc agcatttttg
    19681 cactcattct ggcgcaattc gtcttcgtat tgctggtgtg gggagctgga aaggcggcga
    19741 cccaactggc gcaaaatggc agtgcgctgg cgcgtaccag cctcggcagt ggtttctggc
    19801 tggctgcggc gctggcattg ctggcctgta gcgatgccat ccgccgaatc tccacgcatc
    19861 cgctgtggcg ctggttgttg catatgcaga ttgccattat tccgctgtgg ttgctttact
    19921 ccggcacgct taacgatctc tcgctaatga aagaatacgc caaccgtcag gatgtgtttg
    19981 acgacgcgct ggctcaacat ctgacgttgc tgtttggtgc ggtgctgcct gcgttagtga
    20041 ttggtgtgcc attgggcatc tggtgctact tttccaccgc gcggcagggg gagatttttt
    20101 ctctgctcaa tgtcattcag accgtgcctt cggtggcgct ctttggcctg ttgattgcgc
    20161 cgcttgccgc gctggtgacg gcctttccgt ggctggggaa gctcggcata gcaggaaccg
    20221 gaatgacacc cgcactgatt gcgctggtgc tctatgcctt gctgccgctg gtgcgcggcg
    20281 tggtagtagg cttgaaccag atcccgcgcg atgtgctgga gagcgccaga gcgatgggga
    20341 tgagcggggc gcagcgattc ctgcatgttc agttaccgct ggcgttaccg gtatttctgc
    20401 gcagcctgcg ggtggtgatg gtgcaaattg taggcatggc ggtgattgcg gcgttaatcg
    20461 gcgcaggcgg ttttggtgcg ctggttttcc aggggctgct aagcagcgcc attgatttag
    20521 tgttgctggg ggtgatcccg gtaattgttc tggcggtgct gatcgatgcg ctgttcgatt
    20581 tacttatcgc actgttgaag gtgaaacgta atgattgaat ttagccatgt cagcaaactg
    20641 tttggcgcac aaaaagccgt taacgatctc aatctcaatt ttcaggaagg gagtttttcg
    20701 gtgctgattg gcacatctgg ctccggcaaa tccaccaccc tgaaaatgat taaccgcctg
    20761 gtggaacatg acagcggaga gatccgcttt gccggagaag aaattcgctc gctgccagta
    20821 ctggagttgc gccgccgtat gggctatgcc attcaatcta ttggcctgtt tccccactgg
    20881 agcgtggcac aaaacattgc caccgtgccg caattacaaa aatggtcgcg ggcgaggatt
    20941 gacgatcgta tcgacgaatt aatggcgcta ctggggctgg agtcaaattt acgtgagcgt
    21001 tatccgcatc agctttccgg tggtcagcag caacgtgtgg gagtagcgcg cgcactggct
    21061 gccgatccgc aagtcttact gatggatgaa ccttttggcg cactggaccc ggtaacgcgc
    21121 ggcgcgttgc aacaagagat gacgcgcatt caccgtttgc tggggcgtac cattgtgctg
    21181 gttactcatg atattgatga ggcgctacgg ctggcagaac atctggtatt gatggatcac
    21241 ggtgaagtgg tgcagcaggg gaatccgctg acgatgctga ctcgtccggc gaatgatttt
    21301 gtccgccagt tttttggacg tagtgaactg ggtgtgcgcc tgctttcgtt acgtagtgtg
    21361 gcggattacg tgcgtcgcga agaacgggca gaaggtgagg cactggcaga agagatgacg
    21421 ctgcgcgatg cgctctccct gtttgtcgcg cggggatgcg aggtgctgcc ggtggtgaac
    21481 acgcagggcc agcctagcgg cacgctgcat tttcaggatc tgctggagga ggcgtaagcg
    21541 tatgaagatg ttgcgcgatc cgctgttctg gctcattgct ttgtttgtgg cactgatttt
    21601 ctggctgcct tacagccagc cgctgtttgc tgccttgttc cctcaactgc cacgacccgt
    21661 ttatcagcaa gaaagttttg ccgctctggc actggctcat ttctggctgg tgggaatttc
    21721 gagtttgttt gcggtgatca ttggtactgg tgccggaatt gctgtcactc gcccgtgggg
    21781 cgcggaattt cgcccactgg tggaaactat tgccgccgtt ggacagactt ttccgcccgt
    21841 cgcagtgctg gcgatcgccg ttccggtgat cgggtttggt ctgcaaccag cgattatcgc
    21901 cttgatcctt tacggtgtgc tgcccgtcct gcaggcgaca cttgccgggc tgggagcgat
    21961 tgatgccagc gtgacagaag ttgcgaaagg tatgggaatg agtcgtggtc agcgactgcg
    22021 taaggtcgag ctaccgctgg cggctccggt gattctggcg ggcgtgcgaa cttcggtgat
    22081 tatcaacatt ggtacggcga cgatcgcctc aacggtaggg gccagcacgc tgggtacgcc
    22141 catcatcatc gggcttagcg gatttaatac cgcgtatgtg atccaggggg cgttactggt
    22201 ggcactggcg gcgatcatcg cagaccgcct gtttgaaagg ctggtgcagg cgcttagcca
    22261 gcacgcaaaa taaaggtata acctgcgagc atgacgccac caattccgcc taacgccata
    22321 aacaggaaca gggcgatgac cccaatttta gctatgcgca taatgcactc cttatgttaa
    22381 cgaaaggatt gtacagtaaa gcgcatttgt taacgaatca tt
//
LOCUS       DAJVUN010000059        22276 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.059, whole genome shotgun sequence.
ACCESSION   DAJVUN010000059 DAJVUN010000000
VERSION     DAJVUN010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22276
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.059"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..141)
                     /locus_tag="OQQ76_001860"
                     /pseudo
     CDS             complement(1..141)
                     /locus_tag="OQQ76_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462654.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
     gene            complement(220..314)
                     /locus_tag="OQQ76_001861"
     tRNA            complement(220..314)
                     /locus_tag="OQQ76_001861"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(278..280),aa:Sec,seq:tca)
     gene            607..1989
                     /locus_tag="OQQ76_001862"
     CDS             607..1989
                     /locus_tag="OQQ76_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside-pentoside-hexuronide family
                     transporter"
                     /protein_id="HCS1968378.1"
                     /translation="MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA
                     GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD
                     LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
                     LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMR
                     EDLRDIWQNDQWRIVGLLTIFNILAVCVLGGAMMYYVTWILGTPEVFVAFLTTYCVGN
                     LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQL
                     VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA
                     AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGKRRCQ
                     QQFTSQEVQN"
     gene            1999..4290
                     /gene="yicI"
                     /locus_tag="OQQ76_001863"
     CDS             1999..4290
                     /gene="yicI"
                     /locus_tag="OQQ76_001863"
                     /EC_number="3.2.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HCS1968379.1"
                     /translation="MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRER
                     TWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAE
                     FKSGNLSARVSKGEFWSLDFLRNGERITGQDTNNQRNYMFERLDLGVGETVYGLGERF
                     TALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQSVSFEVGSEKVSK
                     VQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEAT
                     VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKIC
                     VWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADK
                     LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAHIYNELVWNVLKDTVGEE
                     EAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHYIGGFEN
                     TAPAHVYKCWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYR
                     EAARANARGTPMMRAMMMEFPDDPAYDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEG
                     RWTHLWHNDELDGCCWHKQQHSFLSLPIYVRDNTLLALGNNDQRPDYAWHEGTAFHLF
                     NLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQD
                     GSQAESEQGLVVKPQGNALTITL"
     gene            complement(4343..6052)
                     /locus_tag="OQQ76_001864"
     CDS             complement(4343..6052)
                     /locus_tag="OQQ76_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HCS1968380.1"
                     /translation="MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSD
                     YHLAFGAMDHRFSAPSHIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTIL
                     LENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPKAGKVL
                     GTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADG
                     SWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDARLQGPDWAVTDLDLS
                     LHNMTFSKDDWQTQEGKLSMNASEFIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGG
                     MVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRN
                     LIIDIDPDFPWQLTTLDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLA
                     LTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPEL
                     PLTGDGNIQLTASGDIQANAPLKPTVSGQLHAVNAAKQQVTQTMNAGIVSSGEVTSAE
                     LVQ"
     gene            complement(6173..7564)
                     /gene="xanP"
                     /locus_tag="OQQ76_001865"
     CDS             complement(6173..7564)
                     /gene="xanP"
                     /locus_tag="OQQ76_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine/proton symporter XanP"
                     /protein_id="HCS1968381.1"
                     /translation="MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL
                     AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQG
                     TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPL
                     VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNP
                     YLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLML
                     VFMITSLETIGDITSTSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF
                     GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA
                     ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGIT
                     AIVLNLIFPPEKQ"
     gene            7844..9049
                     /gene="gltS"
                     /locus_tag="OQQ76_001866"
     CDS             7844..9049
                     /gene="gltS"
                     /locus_tag="OQQ76_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HCS1968382.1"
                     /translation="MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLL
                     VALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVV
                     GLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEV
                     AMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLI
                     ETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVS
                     VLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD
                     AAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKL
                     YLMLPIFAG"
     gene            complement(9083..11164)
                     /gene="recG"
                     /locus_tag="OQQ76_001867"
     CDS             complement(9083..11164)
                     /gene="recG"
                     /locus_tag="OQQ76_001867"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HCS1968383.1"
                     /translation="MTGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRY
                     EDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAA
                     MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
                     ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQH
                     PAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARV
                     VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
                     NNFRNWFEPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLA
                     LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
                     LPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATW
                     EELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMI
                     IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQ
                     KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIER
                     WMPETERYSNA"
     gene            complement(11170..11859)
                     /gene="trmH"
                     /locus_tag="OQQ76_001868"
     CDS             complement(11170..11859)
                     /gene="trmH"
                     /locus_tag="OQQ76_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(18)-2'-O)-methyltransferase
                     TrmH"
                     /protein_id="HCS1968384.1"
                     /translation="MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG
                     VHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNA
                     VDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE
                     AQRQRQNAGMYLRENSMLPEAEQQHLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEAD
                     ADWWATMQAAG"
     gene            complement(11866..13974)
                     /gene="spoT"
                     /locus_tag="OQQ76_001869"
     CDS             complement(11866..13974)
                     /gene="spoT"
                     /locus_tag="OQQ76_001869"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HCS1968385.1"
                     /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP
                     YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
                     LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
                     ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS
                     EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRV
                     LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG
                     VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
                     PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
                     ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENI
                     QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGV
                     LITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQE
                     FITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA
                     NIMRKIRVMPDVIKVTRNRN"
     gene            complement(13993..14268)
                     /gene="rpoZ"
                     /locus_tag="OQQ76_001870"
     CDS             complement(13993..14268)
                     /gene="rpoZ"
                     /locus_tag="OQQ76_001870"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013511051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HCS1968386.1"
                     /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND
                     KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR"
     gene            complement(14323..14946)
                     /gene="gmk"
                     /locus_tag="OQQ76_001871"
     CDS             complement(14323..14946)
                     /gene="gmk"
                     /locus_tag="OQQ76_001871"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000046969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HCS1968387.1"
                     /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP
                     RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD
                     IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY
                     AEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD"
     gene            15204..16886
                     /gene="ligB"
                     /locus_tag="OQQ76_001872"
                     /pseudo
     CDS             15204..16886
                     /gene="ligB"
                     /locus_tag="OQQ76_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418104.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
     gene            complement(16883..17500)
                     /locus_tag="OQQ76_001873"
     CDS             complement(16883..17500)
                     /locus_tag="OQQ76_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312548.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HCS1968388.1"
                     /translation="MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI
                     IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLY
                     IALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH"
     gene            complement(17792..18616)
                     /gene="dinD"
                     /locus_tag="OQQ76_001874"
     CDS             complement(17792..18616)
                     /gene="dinD"
                     /locus_tag="OQQ76_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein D"
                     /protein_id="HCS1968389.1"
                     /translation="MNEHHQPFEEIRHYGTEGQEFWSARELAPLLDYRDWRNFQKVLA
                     RATQACEASNQAASDHFVETTKMVVLGSGAQRELEDVHLSRYACYLVVQNGDPAKPVI
                     AAGQTYFAIQTRRQELADDEAFRQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAI
                     DFAIFQNHGYRGLYGGLDQKAIHQRKGLKKNQNILDHMGSTELAANLFRATQTEEKLK
                     RDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK"
     gene            19050..19409
                     /locus_tag="OQQ76_001875"
     CDS             19050..19409
                     /locus_tag="OQQ76_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001405000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968390.1"
                     /translation="MRMTSRKKEILSYFEPDNLEWVTGEIGAPPFDVSGVAYLLHGMV
                     SFDKRHQLESTRRTLESMVAGGLLERVTVYESRQIRRGGETNATVVRYGLPGQCAVMR
                     DTGGADNAISGEYMRVS"
     gene            complement(19402..19944)
                     /locus_tag="OQQ76_001876"
     CDS             complement(19402..19944)
                     /locus_tag="OQQ76_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HCS1968391.1"
                     /translation="MYQLKITIRDSKPPIWRRVLVPEQIPFSELHAVIQLAFGWNDEH
                     LYMFEKGRKGDPGSEYRVWGEDESMGNAAITPLWAALQNDGDKLVYTYDFGDWWDCVI
                     VLEKQTHDTSNQPISCLRGKGTTPVENSGGLHGYNELLLQARESDNPEQAEIHNFLML
                     DIERRVYDLSSINDRLQALN"
     gene            complement(20482..21093)
                     /locus_tag="OQQ76_001877"
     CDS             complement(20482..21093)
                     /locus_tag="OQQ76_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968392.1"
                     /translation="MRDRTRSYTTDLPRIGLPFLANMRSRLADAEPGTQLYTQTESGT
                     LYAFRQADSYAMTINGVTRAIRTTTTKAGYGVREWYACPHCMKRAAKLYIGKKDIGCR
                     ACWKLHYKSQSADILDRMRMKIRQQRCAIWGSNDLANNLFNDIRMFPKPKGMRWATFD
                     RKRAELSVMEMAYWQAFSPVVDRITGVIERKAGKAARGIGLTL"
     gene            complement(21787..22137)
                     /locus_tag="OQQ76_001878"
     CDS             complement(21787..22137)
                     /locus_tag="OQQ76_001878"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968393.1"
                     /translation="MKPYILAAGLISSAPALSAIHCGGFTIQPDRYRTTINGDVVHIV
                     DAQFYGAPRDFSQAAIKLLPDAITTTDRQYRLETQGGNALLELMTRENPPRVLNRERC
                     DAGLTSFGWYTSAP"
BASE COUNT         5099 a         5647 c         5941 g         5589 t
ORIGIN      
        1 cagggggcaa atcacctgca aataaacacg gcacatgctg gcgcgcatat cgcggatgcg
       61 ttcgaggaca gaagaaccga caggcggatt cttcagccgc tcatcgtcca tcacaaaacc
      121 ttagaccagg tattcctgaa gccgattgaa tattgagcag tagaaaatat ctggattgac
      181 agtattacaa ggggttggag aacgtcagaa gaggcatttt ggcggaagat cacaggagtc
      241 gaacctgtcc gggaccgctg gcggccccaa ctggatttga agtccagccg cctcaccgga
      301 gacgacgatc ttccgcgcct cgattgctac atggaggcgg ggcgcattat agctacttcc
      361 ttgagtttct acatccccca gatcagtttt ttccgcctaa tacacgcagc gtattatcac
      421 gaaagcatta tagttcatat aaaacccata ttttacaatg atatatgagc ggaattaacg
      481 ctaccacgat cacataaaac aagaatcata aattaataac cagatatcgg aatattcgct
      541 ctcacaggga tggtttacaa aatgcgttat cggtctcagc acccctatag catcaaggaa
      601 aagcagatga agagtgaagt gttgtccgtt aaagagaaaa ttggttatgg catgggagac
      661 gccgccagcc acattatttt cgataacgta atgttatata tgatgttctt ttataccgat
      721 atttttggca ttcctgccgg ttttgtcgga accatgtttt tggtcgctcg tgcactggat
      781 gcgatttccg atccttgcat ggggttgttg gccgatcgaa cgcgctctcg ctggggtaaa
      841 tttcgtccgt gggtactgtt tggcgcactg ccattcggga tcgtctgtgt actggcctat
      901 agcacgccag atctcagtat gaacggcaaa atgatctatg cagcaattac ttacacccta
      961 cttaccttac tttataccgt cgtcaatatc ccttactgcg cattgggtgg tgtaatcacc
     1021 aatgacccga ctcagcgtat ctcgctgcaa tcctggcgtt ttgtgctggc gaccgcggga
     1081 ggcatgcttt ctactgttct gatgatgcca ctggttaatt taattggcgg tgataataaa
     1141 ccactcggtt tccagggcgg tatcgcggtc ctttccgtgg tggcattcat gatgctggca
     1201 ttttgtttct tcaccactaa agaacgcgtt gaagcaccac ctacaacaac gtctatgcgg
     1261 gaagatttac gtgatatctg gcaaaacgac cagtggcgga ttgtcggttt actaaccatt
     1321 ttcaatatcc tggcggtgtg cgtactcggt ggggcgatga tgtattacgt cacatggatt
     1381 ttgggcacgc cggaagtgtt tgtcgctttt ctcaccactt attgcgtggg taacctgatt
     1441 ggttccgcac tggcaaaacc tctgaccgac tggaaatgta aagtcactat cttctggtgg
     1501 acgaacgccc tgctggcagt gattagcctc gcgatgttct ttgttcccat gcaggccagc
     1561 atcactatgt ttgtcttcat cttcgtgatt ggtgtgttgc atcaactggt gacacctatc
     1621 cagtgggtaa tgatgtccga taccgtcgac tacggcgagt ggtgcaatgg taaacgcctg
     1681 accgggatca gttttgctgg cacgctgttt gtgctcaaac tggggttggc cttcggcggc
     1741 gctcttatcg gctggatgct ggcttatggc ggatatgatg cggcagaaaa agcgcagaac
     1801 agcgccacga ttagcatcat tattgcgcta ttcacgattg ttccggcgat ctgttatttg
     1861 ctgagcgcga ttatcgctaa acgctactac tcactcacga cgcacaatct gaaaaccgtt
     1921 atggaacagc tggctcaggg taaacgccgt tgccagcaac aattcacctc tcaagaagtg
     1981 cagaactaag gaacggcaat gaaaattagc gatggaaact ggttgattca acctggcctc
     2041 aatttgattc acccgcttca ggtgttcgag gttgaacagc aggataatga aatggtggtc
     2101 tatgctgccc cccgtgatgt gcgtgaacgt acctggcagc ttgatacgcc tttatttacg
     2161 ctgcgctttt tctccccaca ggaaggtatt gtcggtgtgc ggattgagca ttttcaggga
     2221 gcgctgaata acggtcctca ttatccgctc aatattttgc aggacgtgaa ggtcacaatc
     2281 gaaaacacag aacgttatgc tgagtttaaa agtggcaact taagcgcgcg tgtcagcaaa
     2341 ggtgagttct ggtcactcga ttttctgcgc aacggtgaac gtattaccgg tcaggacacg
     2401 aataatcaac gaaattatat gtttgagcgg cttgatcttg gcgttggcga aacagtttat
     2461 ggtctgggag agcgttttac tgccctggtg cgcaatggtc agacggtaga gacctggaac
     2521 cgggacggcg gcacaagtac tgaacaggcg tataaaaata tcccgttcta tatgactaac
     2581 cgtggctatg gggtgctggt caatcacccc cagagtgtct cttttgaagt gggatcggag
     2641 aaagtctcca aagtgcagtt cagcgttgag agcgaatatc tcgaatactt tgttatcgac
     2701 ggtccgacgc cgaaagcggt acttgatcgt tatacccgtt ttactggtcg tccggcgctg
     2761 ccgcccgcat ggtccttcgg cctgtggcta accacttcat ttaccaccaa ctacgacgaa
     2821 gcgacggtaa acagctttat cgatggtatg gcggaacgca atctgccgct gcatgttttc
     2881 cactttgact gtttctggat gaaagccttc cagtggtgcg attttgagtg ggacccgctg
     2941 actttcccgg acccggaagg gatgatccgc cgcctgaaag cgaaagggct gaaaatctgc
     3001 gtctggatta acccctatat cggtcaaaaa tcccccgtct ttaaagagtt acaagagaaa
     3061 ggctatttac tcaaacgccc ggacggttcg ctatggcagt gggataaatg gcagccaggt
     3121 ctggcgattt atgactttac caatccggat gcctgcaaat ggtacgccga caaactgaaa
     3181 ggtctggtcg cgatgggcgt tgattgcttt aagaccgact ttggcgaacg tatcccaact
     3241 gatgttcagt ggtttgacgg ttccgatccg cagaaaatgc ataaccatta tgcgcacatc
     3301 tacaacgaac tggtgtggaa cgtgctcaag gacaccgttg gtgaggaaga agctgtcttg
     3361 tttgcccgct cggcctccgt cggtgcgcag aaattcccgg tacactgggg tggcgattgt
     3421 tacgctaact acgaatcaat ggcggaaagc ctgcgcggtg gtttgtctat tggcctttca
     3481 ggttttggct tctggagcca ctatatcggc ggctttgaaa ataccgctcc ggcgcacgtt
     3541 tacaaatgct ggtgcgcgtt tggtttgctc tccagccata gccgtttaca cggtagcaaa
     3601 tcttatcgtg tgccgtgggc ctacgatgat gagtcctgtg atgtggtgcg cttcttcacg
     3661 caactgaaat gccgcatgat gccgtatctg tatcgtgaag ctgcgcgtgc aaacgcgcgg
     3721 ggtacgccga tgatgcgggc catgatgatg gagttcccgg acgatccggc ttatgattac
     3781 cttgaccgtc aatacatgtt aggcgacaac gtgatggttg cgccggtgtt cactgaagcg
     3841 ggcgatgtgc agttctacct gccggaaggt cgctggacac acctgtggca caacgatgag
     3901 ctcgacggtt gttgctggca taaacagcag cacagcttcc tgagtctgcc catttatgtg
     3961 cgtgataaca ccctactggc gctgggcaac aacgatcaac gtcccgatta cgcgtggcac
     4021 gaaggcacgg cattccacct ctttaatctg caagacgggc atgaagccgt ctgtgaagtg
     4081 cccgctgctg acggatcggt gatctttact ttaaaagcag cacgtactgg caacacgatt
     4141 actgtgactg gtgcgggcga ggcgaagaac tggacactgt gcctgcgcaa tgttgtgaaa
     4201 gtaaatggtc tgcaagacgg ttcgcaggct gaaagtgagc aggggctggt ggtgaagcct
     4261 caagggaatg cgctgacaat tacgttgtaa tctattgatg gaatgccggg tacgtctgag
     4321 tcgtacccgg cgagattgat gtttactgca ccagctctgc cgacgtaact tcaccgctgg
     4381 aaacgatgcc agcattcatg gtttgagtca cttgctgctt tgcggcgttc acggcatgca
     4441 attgcccgct aaccgtaggt ttcagcgggg cattggcctg aatatctcca ctggcggtaa
     4501 gctgaatatt gccgtcgcca gtcaacggta attcaggcca tccccattgt tgcaaaatat
     4561 tcaccggcac accgcgtcca ttcaggctga tatgggtctg acgttgtggc gtttgtgaaa
     4621 cactggcagt ggcttccaga atgccttttt cagtaaatgc actcagttcg ctgatattca
     4681 ccgtgctgct gttggcggtc agcgccagcg acgggcgacg aacatcaaca cgattgaatg
     4741 tcgcggcggc ggcattcaga ttcgccgagc cactccagac gccccattta tgatcggtaa
     4801 ccagcgtcag gttggcaccg taaccatcga gcgtggtgag ctgccacggg aagtcagggt
     4861 cgatatcaat gatcagattg cggctggcgc taaatctctt cagttgcagg ctgtttaacc
     4921 aaccgggtgt cgtttccatc cacaactgtt gccagttttt cggcaaggta tattccagcc
     4981 cggcaattgc cgcatcatca aggatcaacg ttttcccgtc acgcagccag ttccctgacg
     5041 ttctgaccat acccccttcc cagcggctgg tgaactggcg cagcgctacg ccctgcgggg
     5101 aaaattccgc gtttataatc gggtcaaata aatgcagcga accataaatg aactcgctag
     5161 cgttcatcga cagtttgcct tcttgtgtct gccagtcatc tttactgaag gtcatgttgt
     5221 gcaagctgag atcgaggtcg gtcaccgccc agtccggacc ttgcaaacga gcatcgatca
     5281 cttccaggcg accaatctgc aacgacggga cagagcgtaa tggcgcaaag aagtcggtta
     5341 gcgatttttc gctttgtaga cgtatatccg ccatgcgcag gttttccact tgccagctgc
     5401 cgtcggcgtt acgctgcgcg tttccggtta atgtcccgcg ggcgatgtcg gcacccaggt
     5461 tagtcagcgt aacgcgatcg ttatcaatac tgccttcaat cagtacattg gtggcaggaa
     5521 catcattgag cgaaagcgat ccggcactaa actgaatctg cgccttcgta cccagcactt
     5581 taccggcttt tggtgaccac ggaactacgc cgccatttac ccgctgcgcg ctcagtttcc
     5641 attcgctatt cgggctatta aacgccatat cacgcagttg cagacgatcg gctttgaacg
     5701 gtagcggcgc ggtctggtcg gtgagattca gcgtcccgtt ttccagcagg atggtatcga
     5761 catggcgtgg ttcggtcagt tgccgactgc ttagcgcaat gtcgacactt ttggccacca
     5821 gggtcgcggg ctgaccatca cgaccaaacg tgacattctc cagcacgata tgagatggcg
     5881 cggaaaaacg gtgatccatc gccccgaagg ccagatgata gtcgctattc tcggaaaccc
     5941 atgcgctgat atgttctgct ccccagcggg tttgcagaag aaaatagagg ccagcgatca
     6001 ccactaacag agcgatgaga atgtagagaa gcagcttccc aataaatttc atggtcttcc
     6061 atcccgtgaa atgcacataa gagagttatg cacgatttac gcgcaatcct caaggcggga
     6121 atggtgaaag aggtgagact gcggcggtaa ttatcttacc gccgccagtg aattactgtt
     6181 tttctggtgg gaaaatcaga ttcagcacga tggcagtaat accgcccgcg gcgatcccgg
     6241 aggagagcag gtttttcagc cattcagggg caaactgcaa aatcagcggc tgctgagaca
     6301 cgcccagacc aaccgccagc gacagcgcga taatcagaat cgcccgacgg ttcagcggct
     6361 cacgagaaac gatacgcaca ccggaggcgg cgatggtgcc aaacattaca agcgttgcgc
     6421 cgcccagaac cggttctgga atgtgttgta caaaaccgct cactgccggg aacagaccca
     6481 gcacgatcaa catcagcgcg acgacaaaac cgacatagcg gctggcaaca ccagtcaact
     6541 ggatcactcc gttgttttgc ccgaagcagg agttcgggaa ggtgttaaac accgccgaaa
     6601 caaacgagtt caggccgttt gccagcacgc cgcctttcag gcgtttcatg tacagcggac
     6661 cggacactgg ctgttcggaa acgtcagagg tcgacgtgat atcgccaatg gtttccagcg
     6721 aagtgatcat aaagaccagc atcagcggca gcagcagact ccattcaatg ccaagaccgt
     6781 aatagagcgg cgttggcacc ataatcagtt cttgcgtcat cggttcgttg ctttctggca
     6841 acatgcccat aaaccacgcc agcgcatatc cggccgccat cgcaatcacc agtgaggcca
     6901 cgcgtaagta agggttacgt tgacggttaa gcaggataat taaggctaag accacgcctg
     6961 ccagcagcag atttttcggt gcgccgaagg tgttatcgct catggctgcg taaccgccgc
     7021 caatggacgt taacccaacc tgaattagcg acaggccgat aatcatcacc acaacgccag
     7081 aaaccagcgg cgtaataatg cggcgcgcca gatgcagaac gcgggagatc accatctcgg
     7141 tgcaacttgc cagcatcaac gtgccgaaca aagccgccat catggtagga acatcagcac
     7201 caccggtttt cagcgcggta ccgcccataa tcagcggggc aacaaagttg aagctggtgc
     7261 cctgaataga caacagcccg gagccaaccg gaccccaggc cttaatttga ataatcgatg
     7321 ccacaccgga ggcaaacagc gacatactaa taatgtgttg cgtgtcttgt gccggtaaac
     7381 ccagcgcctg gcagattaat agcgctggcg tgatcaccgc aacgaacatc gccagcagat
     7441 gctgacaggc ggcaaacagg gtttgaggaa gcggcggacg atcttcaaga cggtaaatca
     7501 gttcgctgtt ttgagtctgc gcaaccggtt gcgcattttc tgactcgagg gtggaaacag
     7561 acatcgaaaa caatcccgtg gtagcaaagc gggcatttta gctgaccgaa agagaaaagc
     7621 aaacgtttgc cacatcatca tctaaatatt taaatgagat aaatgcactt ttttatataa
     7681 cttttggtat ttttctgctt aaaatccatg ccatttgttc attaacagct gagaatttga
     7741 cccaggaaag cataactcga tacccgtcat agttcatgaa gttgccactg cgcgatgaag
     7801 tatgacgagt atgaaagagt gatgcggata caaaggagta actatgtttc atctcgatac
     7861 tttagcaacg cttgttgccg caacgctgac gttgctgctc gggcgtaagt tggtccattc
     7921 cgtctccttt ttgaagaaat acaccatacc ggaacctgtt gcgggtggtt tgttggtggc
     7981 gctggcgcta ctagtactga aaaaaagcat gggctgggaa gtcaactttg atatgtccct
     8041 gcgcgatccg ttaatgctgg ctttcttcgc caccattggc ctgaacgcca acattgccag
     8101 tttgcgtgcc ggtgggcgtg tggttggcat cttcttgatt gtggttgttg gtctgttggt
     8161 gatgcaaaat gccattggca ttggtatggc tagcctgtta gggcttgatc cgctgatggg
     8221 gctgttggcc ggttctatta cgctttccgg cggtcacggt acgggcgctg catggagtaa
     8281 attgttcatt gaacgttatg gcttcaccaa tgcgacggaa gtggcgatgg cctgtgcaac
     8341 gttcggtctg gtgctgggcg gcttgattgg cggtccggtg gcgcgctatc tggtgaaaca
     8401 ctccaccacg ccgaacggta ttccggatga ccaggaagtc ccgacggcgt ttgaaaagcc
     8461 ggatgtggga cgcatgatca cctcgttggt gctgattgaa actatcgcgc tgattgctat
     8521 ctgcctgacg gtggggaaaa ttgttgcgca acttttggct ggcactgctt ttgaactgcc
     8581 gaccttcgtc tgtgtactgt ttgttggcgt gattctgagc aacggtctgt caataatggg
     8641 cttttaccgc gtctttgagc gtgcggtatc cgtgctgggt aacgtaagct tgtcgttgtt
     8701 cctggcgatg gcgttgatgg ggctgaaact gtgggagctg gcttcgctgg cgctgccgat
     8761 gctggcgatt ctggtggtac agaccatctt catggcgttg tatgccatct tcgttacctg
     8821 gcgcatgatg ggcaaaaact acgatgcggc agtgctggct gcgggtcact gtggttttgg
     8881 cctcggtgca acgccaacgg caatcgccaa catgcaggcg atcactgaac gctttggccc
     8941 gtcgcacatg gcgtttttgg tggtgccgat ggtcggtgcg ttctttatcg atatcgtcaa
     9001 tgcgctggta attaagttgt atttgatgtt gccgattttt gccggttaac cgatgaagcg
     9061 gcggtcttct caccgccgcc ttttacgcat tcgagtaacg ttctgtctcc ggcatccagc
     9121 gttctatcaa ggcttttgcc tgttgtgggt aacgttcgtg aatatgtcgc gccaggcgct
     9181 gaacttccgg gatcatcgcc tgatcgcgca gtaaatccgc cactttaaat tcagcattac
     9241 ccgtctgacg cgtgcctaac aattcgccag ggccgcgaat ctccagatct ttttgcgcaa
     9301 tcacaaaacc gtcgttactg tcgcgcagca cttgcaggcg aatttgcgcc gttttagaaa
     9361 gcggcgtttt gtagagcagc acgcagtgag aagccaccgc gccacgacct acgcgcccgc
     9421 gcagctggtg taactgcgcc agacccagac gctcagggtt ttcgataatc atcaggctgg
     9481 cgttaggcac atcaacaccg acttcaataa cggtagtggc aaccagcaga tgtagctcac
     9541 cttgtttaaa cgacgccatc accgcctgtt tctcggctgg tttcatccgc ccgtgtacca
     9601 ggccaacatt caattctggt agcgccagtt tcaactcttc ccaggtagct tccgccgcct
     9661 gcgcttccag taactctgac tcttcaatca acgtacaaac ccagtacgcc tgacgacctt
     9721 cagttatgca ggcatggcgc acgcggtcaa tgatgtcagt acggcgggta tcaggaatag
     9781 cgaccgtagt cactggcgtg cggcctggcg gcagctcatc tatcaccgag gtatcgagat
     9841 cggcatacgc cgtcattgcc agcgtgcggg ggatcggcgt ggcggtcatg atcaactgat
     9901 gcggatggaa gccttgctgc tggcctttct cccataacgc cagacgctga tgcacgccaa
     9961 agcgatgttg ttcgtcgata atcaccagcg ccagaccgtt aaactgcacc tgttcctgga
    10021 agatggcgtg cgtaccaaca atcatctgca cctgaccgct ggcgatggct tcctgctgag
    10081 acagtcgcgc tttgcctttc tgcttaccgg cgagccagcc cacttcgata ccgagcggtt
    10141 caaaccagtt gcggaagtta ttggcgtgct gttcggcgag taattcggtt ggtgccatca
    10201 atgccacctg tttgccgtgg gcaatcgcac gcagcgcggc gagggcggcg accagcgttt
    10261 taccggaacc tacatcgccc tgtaccaggc gcatcatcgg cacatccagc gccatatcgc
    10321 gctcgatctc cgccactacg cgtgcctgtg cgcccgttgg cttgaacggt aaggctgcga
    10381 ggagtttatt tttcagcgca tcattggcgc tcagcggctg ggcatgaaaa cgctgtgctc
    10441 cggcacgtaa ggctaacatg ctgaggttgt gcgccagcag ttcttccaga atcagacgac
    10501 gttgcgccgg atgctgcccg gtttccagat cgctaagctg tagcgtcggt ggcgggcggt
    10561 gcaaagtgcg caacgcttcc ggtagcgtca tcattccttg tgacagttcc ggcggcagga
    10621 gttcttcaat ggcgcaggtg tcgagcagat ccagcgcctg gtcggttaat ttacgcagcg
    10681 tggcctgctt tacgccttcc gttgttggat aaaccggcgt gagcgtttcc tgtaattctg
    10741 gcgtgctgag atcgccctgc acgcggtatt ccgggtggat catctccgca ccatatttac
    10801 cgcgctttgc ttcgccataa gccagtacac ggcggcccgt cgccaggcta tttttcattg
    10861 ccgcgctgaa attgaaaaag cgcatggtga ggatgccgga accgtcgctg atctggcagg
    10921 tcatcatccg ccgaccgccg aaggagatat tgcagttcag cacttcgcct tccaccgtgg
    10981 cataaacgcc cggcagtagt tctccgatgg ggtagagatg ggtgcgatct tcgtagcgca
    11041 ggggaaggtg taagagtaga tcctgcacgg tatgcaggtt gattttcgcc agtttgttac
    11101 taagtgctgc gccaacgccc gttagggaac tgagtgggac agcatctaac aggcgacctg
    11161 tcatggcact taccctgcag cctgcatagt agcccaccag tcggcatcag cttcgatctc
    11221 gccttgctga ttgacgtggg gataaggcag gcctttgcgt tttgcgactt tcgccagcac
    11281 cggatagccg ccttcaaaca acaggtgttg ttgctctgct tccggcaaca tgctgttttc
    11341 acgcaggtac atgcctgcat tttgccgctg acgctgggct tcgtaaagaa tgagggctga
    11401 ggcaacggaa acattcagcg actgcaccat gccgatcatc ggaatgatga tgtcctgatc
    11461 cgccagggcc aatgcttcct gcgtgatgcc cgttttctcc tgtcccatca aaatgcaggt
    11521 cgggcgagtg taatcaattt cgcggaaatc gacagcgtta tcagaaagat gggttgccag
    11581 aatctgcatg ccctggcctt tgagatgagc gacggcatcg ccaatggtgc ggtgtgtttt
    11641 cacctgtacc cagctgttac tacccgccgc tgccgaagcc atggtgcgca tgcggctacc
    11701 aggccagacg gcgtgaactt catgtacgcc aacggcatct gcggtacgaa taatcgcaga
    11761 aacgttatga ggtttgtgga cctgctccat gcagacggtc agatcaggct gccgcctggc
    11821 gagcatttcg cagatgcgtg cataacgtgt tgggttcata aaacattaat ttcggtttcg
    11881 ggtgacttta atcacgtctg gcatcacgcg gattttgcgc atgatattcg ccagatgcac
    11941 acggtcacga gcggtcagac gaataaaggc gctgtagacg cgaccatctt tctcttccgt
    12001 attcaaactt tgaatattcg aagtcgtggt gttaattgcc gccgtcaggt ttgccagcgc
    12061 accctgatga ttgaacatct ccaccttgat ttcggtgatg aactcctgcg ccgtctcttt
    12121 atcccattcc acagccataa acttctctgg ctctttctgg tagccacgga tgttacggca
    12181 ggattcatgg tggatcacca gacctttacc ggggctgacg tgggcgataa tcgggtcgcc
    12241 aggaataggg cggcagcatt tcgcaaaggt gatcagcacg ccatcagcgc ctttgatcgg
    12301 cagatgcccg tggctttgag tcgccggtgg aatggaggcg tccccatgtt gtagattttt
    12361 cgcgaccacc acgctcattg cgttaccaag gccgatttct gccagcagat cgtcaagcgt
    12421 tgccagcttc atgcgatcca gctcgcgctg aatattttcc tgcgggattt cattgagctt
    12481 acggctacca cccaaagcat ggttgagcag acgacggccc aggcttacag aatcatcacg
    12541 cttgaggttt ttcagcaact gacgaatttt ggcgcgcgct ttcgagctaa cgacaaagtt
    12601 cagccaagcg gcattcgggc gagcgcccgg agcggtaatg atttcaacgg tctgaccgct
    12661 agtaagcggc tgcgacagcg ggtaaggctg gcggtcgacg cgtgcgccca cgcaggcatg
    12721 gccgatatcg gtatgcactg cataagcgaa gtcgacgggc gttgcaccgg caggcagctc
    12781 gacaatgcgc ccttccggtg tgaaaacgta aatctcatcc gggaagagat cggatttaac
    12841 gctctcgata aattcaaacg aactaccggc gctctgttgc agctccagca ggctttgcat
    12901 ccagcgctgg gcgcgtattt gtgcggtagt actggtttcg ccgtgctctt tataagccca
    12961 gtgcgcggca acacccatct ccgccatctg atccatatct tcggtacgga tctggacctc
    13021 aaccggcacg ccgtgcgggc caatcatcga ggtgtgcaac gactgatagc cgttcgcttt
    13081 tggaatggcg atatagtctt tcacgcggcc cggacgcggc ttgtacaggc tgtgcatctg
    13141 gcccagcacg cgataacagg tgtcagaatc attgacgatc acgcggaaag cgtagatgtc
    13201 catgattgag tgaaaacgct gctctttgag caccattttg cagtaaatcg aataaagatg
    13261 cttttcgcga ccactgacgc ggcacggtat tcccgcttcc tgcaaacgcc cttcgatttc
    13321 agaaagaatc ttctggatca tctctttacg gttgccgcgc gcggctttca ccacttcttt
    13381 gattacgcga taacggttgg gatacagcgc ctcaaaaccc agctcttcga gttcggtttt
    13441 aatgtggtgg atacctaaac ggtgcgccag cgggctgtaa atttcgagag tttcacgggc
    13501 gatgcggcga cgtttgtccg ggcgaagtga gcccagcgtg cgcatgttgt gggtacggtc
    13561 ggcaagtttg atgaggatga cgcggatatc ctgcaccatc gccataatca tcttgcgaaa
    13621 gttttcggcc tgcgcctctt tcttatcgcg gaacttgagt ttatcaagtt tcgacacccc
    13681 ctctaccagc tcggcgacgc ttttaccaaa aagctgttcc atatcctggt aggtggcggg
    13741 agtatcttca atcacgtcat gcagcagcgc cgccatcagc gtttcatagt cgagtttcat
    13801 ctcggccaga atgcaggcaa ccgctaccgg gtgcgtgata tagggttcac cgcttgaacg
    13861 tgtttgcccc tcgtgagcat cacgtgcaac gagatacgcc tgccgcagac gcttgatttg
    13921 gtcttccggc aggtaggttt gaatcagttg attcaggctt tcaaacagat acaagggcga
    13981 cccgctttgt gattaacgac gaccttcagc aatagcggta acggcttgta attcagcggc
    14041 ttcctgctct tgctgttcct ggcgttcgcg aacgtcgagg atctggttgt tgatcagacc
    14101 ttcttcgatt tcgcgcagcg cgattacagt ggttttatcg ttttcttccg gtaccagcgg
    14161 atcctttccg cctacctgca tctgacgagc gcgacgcgcg gcgaccagta ccaggtcaaa
    14221 acggttacca attttctcta cagcgtcctg aacagttacg cgtgccatac ttaaaaagct
    14281 ccacaggtga agaaatgact gggcatgata ctgaaatcag gttcagtctg ccaacaattt
    14341 gctgattaaa gcgtcatgac gctgcttttg gcggctcatg cgcagacgtt cggcgcgaat
    14401 aatggtcttc aaatcggtca acgcggtatc gaagtcatca ttcacaatca ggtaatcata
    14461 ttcggcgtaa tggctcattt ctgcaacagc ttgcgccata cgctttgcaa tgacctcttc
    14521 gctgtcctga ccgcgaccgc gtagacggcg gtccagttca attttagacg gcggtaaaat
    14581 aaagatactc cgcgcgtgcg gcatcttctg gcgaatttgc tgcgcgccct gccagtcgat
    14641 atcgagaaaa acatcgacac cggtcgccag tacttgctca atggcctcac gcgaagtgcc
    14701 atagtaatta ccaaaaactt ctgcgtgttc gaggaacgca tctctgctaa tcatttcttt
    14761 aaattcatca tgattaacaa agaaataatg ttcaccgtgg acttcaccag gacgcggttg
    14821 gcgtgtggtg tgtgaaacag aaacctgggt gtcatacaac ggttgggttt ttaataaagc
    14881 ctgaatcagg ctggatttac ccgcgccact gggggcagaa acaatataaa gcgtgccttg
    14941 agccatgagt atctttcgta tgtgattagc gaaataaagc ctacatacga gcttattata
    15001 cacggcgcgg ccatgtgacg tagcccttgc tcacactttt tgcgcaaagt tgttgcgttt
    15061 tgcgtagctg cttccgcatt tgcctgtgat ttactgcaat aaagacgatt ctcaggaagc
    15121 gtcctcgcag actccgtttt tgccactcgg ctttgccttc accacgttgt atatctgcca
    15181 gcctgactac agcggaggtg aagatgaaag tatggatggc gatattaata agtatcttgt
    15241 gctggcaatc atctgtgtgg gcggtctgtc cggcctggtc gccagccaga gcacaggaag
    15301 aaattttccg ccagcaacag caaataaaac agtgggacga tgactactgg aaggaaggaa
    15361 aaagtgaggt ggaagacggt gtttacgatc agttaagcgc ccgtcttacg cagtggcaac
    15421 gctgctttgt gagcgagccc cgcgacgtga tgatgccgcc tttaaatggt gcggttatgc
    15481 atccggttgc ccatacgggt gtacgcaaaa tggcggataa aaacgcatta agtctgtgga
    15541 tgcgagaacg tagcgatctt tgggtgcagc caaaagttga tggcgttgcg gtaaccctgg
    15601 tttatcggga cgggaaactg aacaaagcaa tcagtcgcgg taatggcctg aaaggcgagg
    15661 actggacgca gaaagttagc ttaatttccg ctgtgccgca aaccgttagc gggcctttag
    15721 ccaacagtac gcttcagggg gaaatatttc tccagcgcga ggggcatatc caacaacaaa
    15781 tggggggaat aaatgcccgc gcaaaagttg ctggcttgat gatgcgccag gacgatagcg
    15841 acacgctgaa ttctctgggc gtttttgtct gggcatggcc ggatggaccg cagttaatgt
    15901 ctgatcgttt aaaagagctg gctaccgcag gttttactct aacgcagacg tatacccgtg
    15961 cggtgaaaaa tgctgatgaa gttgcgcgcg tacgcaatga gtggtggaaa gcggaattac
    16021 ccttcgtcac cgatggcgta gttgtacgag cggcgaaaga gccagaatcc cgccattggc
    16081 taccgggcca ggcagagtgg ctggtggctt ggaaatatca acctgtagct caggttgccg
    16141 aagtgaaggc gattcagttt gcggtgggta agagcggtaa aatatcggtg gttgcgtcac
    16201 tcgcatctgt catgctggat gataaaaaag tccagcgggt gaatattggt tccgtcaggc
    16261 gctggcagga gtgggatatt gcgcctggtg atcagattct cgtcagcctt gccggtcagg
    16321 gtattcctcg cattgatgat gtggtgtggc gcggtgcaga acgtacaaaa ccgacaccgc
    16381 cagaaaaccg ctttaactcg ttgacctgct actttgcttc tgatgtttgt caggaacagt
    16441 tcatttcacg cttagtctgg ctggggtcaa aacaggttct tgggctggat ggcattggtg
    16501 aggccggttg gcgcgcgctg catcagactc atcgctttga gcatatcttt tcttggcttt
    16561 tattaacgcc agagcaatta cagaacacgc cggggatcgc gaaaagtaaa agtgcgcagt
    16621 tatggcatca gtttaatctg gctcgtaagc agccttttac tcgctgggtg atggcaatgg
    16681 gaataccgct aacccgggcg gcgcttaatg ccagtgatga acggtcctag tcgcaacttt
    16741 tatttagcac ggagcagttc tggcagcagc tgccggggac tggatctggg cgcgccagac
    16801 aggttattga atggaaggaa aatgcgcaaa tcaagaagct gggcagttgg ctggctgccc
    16861 agcagatcac aggttttgaa ccttagtgac cttcgtggct gtagtaaaag accggtaatc
    16921 ccagcttaag acgtagcgcc agtaagcggg caaaaaagcc gaataccagg gtggagataa
    16981 tcaccacatc atggttagaa acatagtgtt gcagcgcgat gtacagcacg gcggaggcaa
    17041 atgagacacc agcatacaac tctttctgga ataccagtgg gatgcgttta cagaacatat
    17101 cgcgcaaaac gccgccaaac acgccggtgg ttaccgccgc gacaacggca ataattgggc
    17161 cgtgccccat atccagtgca acctgtgcgc cgatgataga aaagaccacc agtccgagcg
    17221 catcgagcac cagaaacact ttgcgcaggt aaggcattac aggagcaacg atagtggtga
    17281 gtactgcggc ggtagcgacg ataatcacat attccgggtg tttgacccag ccgagcggat
    17341 agtggcccag cagaatatcg cgcactgacc ctccgccaat tgcggtggcg gtcgcaataa
    17401 taattacgcc aaatgtatcc atgcgccgtc gtccggccgc cagcgccccc gtcatggctt
    17461 cggcagtgat gccaaccaaa tacaaaatgt gtaacagcat ggttctctcc ctaaaaatct
    17521 gtctggcagg gtagcgattt gtgcgcattg tcacgattga gattttttaa ggtaagagga
    17581 aattgataac ttgtagttat gtgaaatcgc tattttctgt agcgtagatg cattattctg
    17641 agttcttgtc tgagaaaatg cataagaaaa aataggttaa aattgagggg tggaaaagaa
    17701 aggtgcaatg tttagccatt gtgttcactg cacctggact ttggcttacg catcgggtat
    17761 ctcaattaag aaaaagagtt tttagtttct gctatttctt ctctgtaatt tttacactgt
    17821 tttccaactg cttgatgctg acctgcgggg tcggcaactc ctcaggcatg gttccgccaa
    17881 gttcctgaat ggtttgcctc accttgcgac ccacgtcaaa gtgtgtggtg tttgcttgct
    17941 gttttgaatt cacgccatcc cgcttgagtt tttcttctgt ttgggtagct cgaaagagat
    18001 tagccgccag ttctgttgaa cccatatgat ccaggatatt ctgattcttt ttcagcccct
    18061 tccgctgatg aatagctttc tgatctaatc caccatacag cccccggtaa ccatgattct
    18121 gaaatatggc gaaatcgata gctgtcgcta ccccagcttg ctgcgctgcc tcaaccaatt
    18181 gtttgttatg ttctttcaat tcatttctca gaaaaagacg cttttcgtct tcacgaagtt
    18241 gcctgaaagc ttcatcgtca gccagctcct gccgtcgggt ctggatagca aaataagttt
    18301 gccctgccgc aataaccggt ttcgcagggt cgccgttttg tactaccagg taacaggcat
    18361 agcgggagag atgaacatct tcaagttctc gttgagcccc tgaacctaat acaaccattt
    18421 tggtggtttc aacgaaatgg tcagatgcag cttgattgct ggcttcgcac gcttgagtcg
    18481 cgcgggccag taccttttga aaattgcgcc agtcccgata atccagtaac ggtgccaatt
    18541 ctctagctga ccaaaattct tgcccttcag tgccataatg ccgtatttct tcaaaaggtt
    18601 gatgatgttc gttcattgcc cactccatgt gatatcgatt gcaaagaaag taaatctgta
    18661 actgtattta tatacagttg tgagtatctc acgttctcag tgtgctgggc aaaaaaacat
    18721 cgcaaaatct ggagcaggca cgcaaaacag aattgaagtt gcggggaaga aaaatgccgc
    18781 tctgtttgag tgggcggcat ttgtgaaggc tgaaaagtaa gaattggcgt tacgagttga
    18841 atctgtttat tgagtagtgg ctttaaacgc ccgtggttgc tgtgtttctt gtaatgcgtt
    18901 ttctcagtag gtacaccctt gtgtacacgg tattttgagg cgctgtcttt ggctgctcgt
    18961 tttatgctct catgcttgct gttctggcct cttatctttt gcgccttatt gtatgatagt
    19021 gctatcccac aataaggaac ctgccagcta tgagaatgac cagccgcaaa aaagagatac
    19081 ttagctactt tgaaccggat aacctcgaat gggtgactgg tgagattggt gcgccgccgt
    19141 tcgatgtgtc gggtgtggcc tacctgcttc atggcatggt gtcgttcgat aagcgtcacc
    19201 agctcgaatc aacccggcgc acactggaaa gcatggttgc tggtggactg cttgagcggg
    19261 tgacagtgta tgaatcgcgc cagatacggc gcggcggtga gactaacgca acggtcgtgc
    19321 gctacggttt gcccggtcag tgcgctgtta tgcgcgatac tggcggcgct gataacgcaa
    19381 tatcaggcga atatatgcgg gtcagttaag agcctgcaat ctgtcgttga tgctgctcag
    19441 gtcgtaaacc cggcgctcaa tatccagcat caggaaattg tggatctcgg cctgctcagg
    19501 attatcagac tctctggcct gtaatagcaa ttcattgtaa ccatgcaagc cgcctgagtt
    19561 ttccactggg gtggtgcctt tcccacgcag gcagctaatg ggctgattgc tcgtatcgtg
    19621 tgtttgcttc tccagcacaa tgacgcaatc ccaccagtcg ccaaagtcat acgtgtaaac
    19681 cagcttgtca ccatcattct ggagcgctgc ccatagtggt gtgattgccg cattacccat
    19741 gctttcatcc tcaccccata cgcgatactc gctaccggga tcacctttac gccctttctc
    19801 gaacatatac aggtgttcgt cattccagcc aaaagccaac tggatcaccg cgtgaagttc
    19861 actaaagggg atttgctctg gaaccagcac acgccgccat ataggtggtt tgctgtctcg
    19921 gatggttatc tttagctggt acatgcaaat cctgaataaa tgcgaatcgg aaggataacg
    19981 atactgacgt actcacaatt ctgtaaaggt gaataaagga aatttgctta atacgcataa
    20041 gttacatgcg gaataatccc gtatctacct gcgcggcgct ggcttcttcc actggtaggc
    20101 aggtgctcgc atcatttcgc ggaacctgtc gcgccgggct atatcggcat taactgagcg
    20161 ttctatctcc cgttgatctg cctgtgtaag ctggtggcct ccatgctcaa gtttggcgat
    20221 ggtcaataag gctatttcgc gtggtgtcat acgtcatacc ctctggaagg atgaaacacg
    20281 cccggattaa atttcatttt tcgcgggtat gaaaaaacga tggggcgggc agtccttaag
    20341 gctcaggatt gcagagattt ggcctccccc tcccggtgat agtttattgc ttgatgtgga
    20401 cggcttgcta tattggcggc gaatgcaaat tgtcgcagaa gtctatcccg ttctctgacg
    20461 ccccgtgcgg gcgttttgct tttatagagt caggccaatg cctctggctg cttttcctgc
    20521 tttacgctca ataacgcccg tgattctgtc cactaccggg ctgaatgcct gccagtaagc
    20581 catctccata actgataact ctgcccgctt cctgtcaaac gtagcccagc gcatcccctt
    20641 tggttttggg aacatgcgaa tgtcattaaa cagattattg gcaaggtcat tgctgcccca
    20701 tatcgcgcat cgctgctggc gtatcttcat gcgcatcctg tccagtatgt cggcactctg
    20761 gcttttatag tgaagtttcc agcacgcccg gcagccaatg tctttcttgc cgatatacag
    20821 ctttgcagcc cgcttcatac agtgggggca agcgtaccat tcccggacgc catacccggc
    20881 cttcgtggtt gtggtgcgaa tagcccgcgt cacgccgttg attgtcatgg cgtagctgtc
    20941 ggcttgccgg aaggcataca acgttccgct ttcggtctgg gtataaagct gcgtacccgg
    21001 ttcagcatcc gccagcctgc tacgcatgtt cgcaaggaat ggcaacccta tacggggcag
    21061 gtcggtggta tagctgcgcg ttctgtctct cactggctgg cctcctgcga attactgcgc
    21121 attaactgcg aacggtgcgc aaattgaata cgaaataata tgcgtatttt actgtaaatt
    21181 gcgcaccaat tttgcaattt cacatcaata aagccagtaa ccgcgcgggg gttgaggatg
    21241 gtttgcgcat tgatatccgt ttcgttttgc ggagatattt tgttaactgc gcaattcgca
    21301 atttactgcg caatgctcgg gtttcgtatt cggaggattt tccactttgc gtactgcgtt
    21361 cgactgtaga aacccagcga taatacgcct tacaggctgg tacgcaactg cgaatcggtt
    21421 tcgtatctgg tgagagtgcg tacctgagtt gcgtactaaa accttagcaa aaattagcat
    21481 cgtactgata ccgccacctc caaactgatt gagccaaagc cagcaatatc agacgtctta
    21541 gccattttgc gcacgcatct gtttgcaatg ccggcgttag aattcgtcag gtggtacgca
    21601 cgttaaatgc gcagttttgc cgcgtaccgg actgcgtact gcgaaccaat gccgcaaacc
    21661 tgaatatttt tgacgacctg aatcacaatt aggctcctag cccgctactg gcaaggactt
    21721 ggctccatta gagttttaaa tccgtcaaga acagtccaat attttaggct gcgctcggaa
    21781 cgaacatcac ggcgcagaag tgtaccaacc gaaacttgtt aacccggcat cgcagcgctc
    21841 acgattaagc acacgtggcg ggttttctct ggtcatcaac tcaagcaagg cattgcctcc
    21901 ctgcgtctct aggcggtatt gcctatcggt agtggtaatg gcatccggca ataactttat
    21961 ggcggcctgg ctaaagtctc gcggtgcgcc gtaaaattgc gcatcaacaa tatgaaccac
    22021 atcgccgtta atcgttgtcc gataacggtc tggctgtatg gtaaagcccc cacaatggat
    22081 agcagatagt gccggtgccg aggagatcag gccggctgcc agaatgtatg gcttcattct
    22141 tcacccacca attcatccag ttcagccagc gtcataggct ttggtacagg cttgtcaata
    22201 tcacccataa tgcgctggaa gttgctggca ggcatatggt tacggttctc cagtattttc
    22261 gccagcgcga taacat
//
LOCUS       DAJVUN010000060        22134 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.060, whole genome shotgun sequence.
ACCESSION   DAJVUN010000060 DAJVUN010000000
VERSION     DAJVUN010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22134
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.060"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            153..1241
                     /locus_tag="OQQ76_001879"
     CDS             153..1241
                     /locus_tag="OQQ76_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001352530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CblD"
                     /protein_id="HCS1968394.1"
                     /translation="MRNRLIAAILGLFGTLTGVQAAPDVTSEITYDLASGRADYYFWK
                     DEASAGNNGYMWYECSYPDLQQTCTANGNISTVQIYLTEQRSGMRWPVKLKGFKTAIV
                     SSDEAPPGCKGGKGLQTNLKDSNRSSCTEDGQHYYIYDTKFLTLYLEQTEMKNLPIGG
                     VWKGKVKLHSNSPAQDYFANITLNTLDPNHIDVFFPEFAHATPRVQLDLHPTGSVNGS
                     NYAQDLTMLDMCLYDGFNGNAISYEIMLKDEGRPAAGRRDGDFSIYRQGGTSTDEGER
                     IDYRVKMYNPETGGQIDVRNNENMVWNSINLKSVRPVVLPGIRYAVMCVPTPLTLAVD
                     KFSVMDKQAGYYMGKLSVIFTPSLPTIN"
     gene            complement(1329..2627)
                     /gene="exuT"
                     /locus_tag="OQQ76_001880"
                     /pseudo
     CDS             complement(1329..2627)
                     /gene="exuT"
                     /locus_tag="OQQ76_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708898.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hexuronate transporter ExuT"
     gene            3110..4522
                     /gene="uxaC"
                     /locus_tag="OQQ76_001881"
     CDS             3110..4522
                     /gene="uxaC"
                     /locus_tag="OQQ76_001881"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HCS1968395.1"
                     /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED
                     YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH
                     WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP
                     IDSLEHHAEIAKDGSFTIKVLPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADL
                     QTGLTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK
                     TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL
                     SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER
                     QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG
                     EMVKNICFNNARDYFAIELN"
     gene            4537..6024
                     /gene="uxaA"
                     /locus_tag="OQQ76_001882"
     CDS             4537..6024
                     /gene="uxaA"
                     /locus_tag="OQQ76_001882"
                     /EC_number="4.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
                     /protein_id="HCS1968396.1"
                     /translation="MQYIKIHALDNVAVALADLAEGTEVSVDNQTVTLRQDVARGHKF
                     ALTDIAKGANVIKYGLPIGYALADIAAGEHVHAHNTRTNLSDLDQYRYQPDFQDLPAQ
                     AADREVQIYRRANGDVGVRNELWILPTVGCVNGIARQIQNRFLKETNNAEGTDGVFLF
                     SHTYGCSQLGDDHINTRTMLQNMVRHPNAGAVLVIGLGCENNQVAAFRETLGDIDPER
                     VHFMICQQQDDEIEAGIEHLHQLYNVMRNDKREPGKLSELKFGLECGGSDGLSGITAN
                     PMLGRFSDYVIANGGTTVLTEVPEMFGAEQLLMDHCRDEATFEKLVTMVNDFKQYFIA
                     HDQPIYENPSPGNKAGGITTLEDKSLGCTQKAGSSVVVDVLRYGERLKTPGLNLLSAP
                     GNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKIATNSELAAKKKHWLDFDAGQL
                     IHGKAMPQLLEEFIDTIVEFANGKQTCNERNDFRELAIFKSGVTL"
     gene            6107..6658
                     /locus_tag="OQQ76_001883"
     CDS             6107..6658
                     /locus_tag="OQQ76_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HCS1968397.1"
                     /translation="MTAYWLAQGVGFIAFLIGITTFFNRDERRFKKQLSVYSAVIGVH
                     FFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIG
                     TIVSTRALFRCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFW
                     RMQKRGIDPFKVEKTPPAVDERG"
     gene            complement(6663..7907)
                     /gene="sstT"
                     /locus_tag="OQQ76_001884"
     CDS             complement(6663..7907)
                     /gene="sstT"
                     /locus_tag="OQQ76_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HCS1968398.1"
                     /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG
                     LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF
                     SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG
                     FALRHGNETTKNLVNDLSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQL
                     LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA
                     LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA
                     SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD
                     VLFTAAACQAEDDRLANSALRN"
     gene            complement(8523..9488)
                     /gene="alx"
                     /locus_tag="OQQ76_001885"
     CDS             complement(8523..9488)
                     /gene="alx"
                     /locus_tag="OQQ76_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001098790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family membrane protein Alx"
                     /protein_id="HCS1968399.1"
                     /translation="MNTVGTPLLWGGFAVVVAIMQAIDLLLQGRRGAHAMTMKQAAAW
                     SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS
                     YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL
                     AHEDESGIGNKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI
                     FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI
                     GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINAWVNYRHDKQRGE"
     gene            complement(9772..10758)
                     /locus_tag="OQQ76_001886"
     CDS             complement(9772..10758)
                     /locus_tag="OQQ76_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311996.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCS1968400.1"
                     /translation="MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFAN
                     DFSVEHLFTSLEAMAESDAIDAVYIASPNALHFSQTQLFLSHKIHVICEKPLASNLAE
                     VDAAIACARENQVVLFEAFKTASLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYL
                     DGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAHGVVVMD
                     YGDFSVTLLHSKVSDSVLESEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHI
                     NTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL"
     gene            complement(10837..11520)
                     /locus_tag="OQQ76_001887"
     CDS             complement(10837..11520)
                     /locus_tag="OQQ76_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vancomycin high temperature exclusion protein"
                     /protein_id="HCS1968401.1"
                     /translation="MQPRLLLRICFSRRTLKIACLLLLVAGATIFIADRVMVNASKQL
                     TWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDE
                     ASGMQKALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWL
                     AKQYSIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMIGPF
                     SEHGCPAKE"
     gene            complement(11597..12100)
                     /locus_tag="OQQ76_001888"
     CDS             complement(11597..12100)
                     /locus_tag="OQQ76_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HCS1968402.1"
                     /translation="MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATD
                     KALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIR
                     VATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQL
                     SLGQDKI"
     gene            12185..13321
                     /gene="rlmG"
                     /locus_tag="OQQ76_001889"
     CDS             12185..13321
                     /gene="rlmG"
                     /locus_tag="OQQ76_001889"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(1835)-N(2))-methyltransferase
                     RlmG"
                     /protein_id="HCS1968403.1"
                     /translation="MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEI
                     RGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD
                     YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG
                     PTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR
                     FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM
                     PEALDRSEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING
                     ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR"
     gene            13606..13920
                     /gene="higB"
                     /locus_tag="OQQ76_001890"
     CDS             13606..13920
                     /gene="higB"
                     /locus_tag="OQQ76_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin HigB"
                     /protein_id="HCS1968404.1"
                     /translation="MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAV
                     FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG
                     KK"
     gene            13917..14333
                     /gene="higA"
                     /locus_tag="OQQ76_001891"
     CDS             13917..14333
                     /gene="higA"
                     /locus_tag="OQQ76_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin HigA"
                     /protein_id="HCS1968405.1"
                     /translation="MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLND
                     PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLADLPEIG
                     SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID"
     gene            complement(14378..16396)
                     /gene="fadH"
                     /locus_tag="OQQ76_001892"
     CDS             complement(14378..16396)
                     /gene="fadH"
                     /locus_tag="OQQ76_001892"
                     /EC_number="1.3.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
                     /protein_id="HCS1968406.1"
                     /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY
                     AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI
                     LHTGRYSYQPHLVAPSALLAPINRFVPHELTHEEILQLIDDFAHCAQLAREAGYDGVE
                     VMGSEGYLINEFLTLHTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM
                     LDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL
                     KGHISLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINT
                     CIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN
                     AAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYHRMIEVTGVTLKLNHTVT
                     ADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF
                     DTAMYLSQPGESTSQNIARFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS
                     KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC
                     AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI"
     gene            complement(16822..19173)
                     /gene="ygjK"
                     /locus_tag="OQQ76_001893"
                     /pseudo
     CDS             complement(16822..19173)
                     /gene="ygjK"
                     /locus_tag="OQQ76_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417551.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
     gene            complement(19190..20260)
                     /gene="ygjJ"
                     /locus_tag="OQQ76_001894"
     CDS             complement(19190..20260)
                     /gene="ygjJ"
                     /locus_tag="OQQ76_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgjJ"
                     /protein_id="HCS1968407.1"
                     /translation="MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTS
                     SPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADH
                     DGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGY
                     VIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMM
                     NGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSES
                     GMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGDGRFATAFDSR
                     FYMKNASHDPSDQIFLMQYFYW"
     gene            complement(20394..21827)
                     /locus_tag="OQQ76_001895"
                     /pseudo
     CDS             complement(20394..21827)
                     /locus_tag="OQQ76_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311987.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
     gene            complement(21890..>22134)
                     /locus_tag="OQQ76_001896"
     CDS             complement(21890..>22134)
                     /locus_tag="OQQ76_001896"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-galactosidase subunit beta"
                     /protein_id="HCS1968408.1"
                     /translation="YYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEG
                     QIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK"
BASE COUNT         5480 a         5783 c         5751 g         5120 t
ORIGIN      
        1 cttaagtgtc cactgagtgt tgaaaagaaa cgcgccagca ttcgttacag cggagatgtt
       61 acttgtagtg tggtgactta ttcacaatta ccggagttga aacagcctaa attacgtgga
      121 aacgttcaga cggcgcaaag ggaggttgca ccatgagaaa tcgattgatt gcggcgatat
      181 tgggcttgtt tggcacgctc actggcgttc aggcagctcc tgacgtgacc agtgaaatta
      241 cgtatgattt ggcatctggt agagcggatt attacttctg gaaggatgaa gcgtcggcag
      301 gaaataatgg atatatgtgg tatgaatgtt cgtatcctga cctccaacaa acctgtacag
      361 ctaatggaaa tatatcgaca gtacaaatct atttaactga acaacgcagt gggatgcgtt
      421 ggccggtaaa actcaaagga tttaaaacag ccattgtaag tagcgatgaa gcgccgccag
      481 gatgcaaggg gggcaaaggg cttcagacga atcttaagga ttctaataga tcttcatgta
      541 cagaagatgg tcaacattat tatatatacg atacaaagtt tcttacgctc taccttgagc
      601 agacagagat gaagaatttg ccgattggtg gcgtctggaa ggggaaagtt aaattacatt
      661 cgaacagccc ggcccaggac tatttcgcaa atattaccct gaatacgctc gaccccaacc
      721 atattgacgt gttcttcccg gagttcgccc acgccacgcc aagggtgcag ttagacttgc
      781 atccaacagg aagcgttaac ggcagcaact acgcgcaaga tctgaccatg ttggacatgt
      841 gcctgtacga tggttttaac ggtaatgcca tcagttatga aatcatgctc aaagatgaag
      901 ggcgaccagc tgcagggcgc agagacggtg acttctctat ctatcgtcag ggaggaacct
      961 ctaccgacga gggagaacgc attgattacc gggtcaaaat gtacaacccg gaaaccggtg
     1021 ggcaaattga tgtgcgcaat aatgaaaata tggtctggaa cagcattaac ctgaaaagtg
     1081 tgcgtccggt ggtactgccc ggtattcgct atgccgtgat gtgtgtgccg acacccttga
     1141 ctctggcagt cgataaattc agcgtgatgg ataaacaggc cgggtactac atgggcaaat
     1201 tgtcagtaat ctttacgcct tccttgccaa ccatcaatta accctgcaaa gcggacaaac
     1261 gcttttttct atataaacga cgaagccgcc tgataaggcg gcttcgtcgt tataacttac
     1321 gttaaacgtt aatgttgcgg tgcgggatcg ttatgtgatt cctgcgctac ctcaatcgcc
     1381 ggtttgttct gcaacacggt ccagataacc agcgcaccta acaggtcgaa cactgccagt
     1441 actgcgaaca gcgggctgaa gccgatggtg tcagccagtg caccgacaac cagcgaaaac
     1501 agcgtacttg ccagccatgc ggacatcccg gttaaaccgt tcgccgtcgc cacttcgtta
     1561 cgaccgaaca cgtcagaaga gagcgtaatc agcgcgccag acagtgcctg atgagcaaaa
     1621 ccaccgatac acagcagcat aattgcgaca tacgggttgg tgaacaggcc gatcataccc
     1681 gggccaatca tcagcactgc acccagcgtt acgaccatct tacgggaaac gatcaggttc
     1741 acaccaaacc aacgttggaa cagcggcggc aggtaaccac cgaggataca accgaggtca
     1801 gcaaacagca tcggcatcca ggcgaacatc gcgatctctt tcaggttaaa gccgtaaact
     1861 ttaaacatga acagcgggat ccacgcgtta aaagtaccct aggctggttc tgccaggaaa
     1921 cgcggcagcg cgatacccca gaactgacgg ttacgcagga tctgaccaac ggacattttc
     1981 ttcgccgtgc tcacctggtg ctgggcttcc tgaccattaa taatatagtc gcgttcttca
     2041 tcggtcagat gcttctggtc gcgcggatgt ttatagaaaa tcagccatgc catcgcccag
     2101 ataaagctca atgcaccgga gatgataaat gccatctgcc agctgtgcat tacgattgcc
     2161 cataccacca gcggcggcgc aatcatcgca ccaatcgaag aacctacgtt aaagtaacct
     2221 accgcgatgg aacgctcttt cgccgggaac cattcggagc tggctttcag acccgccggg
     2281 atcatcgctg cttccgcggc accgactgca ccacgagcaa tcgccaggcc acccctgcta
     2341 ccagccagcg cggttgcacc acagaatacg gcccacagta cagcaaacat tgcataaccg
     2401 attttcgtac ccagcacatc cagtacatag cccgctaccg gttgcatgac cgtataagca
     2461 gcagaatagg ctgcgatgat ataggaatac tgttgggtgg agatgtttaa ctcttccatc
     2521 agagttggct cagctgccgc cacagtgtta cgcgtcaggt aaccaagcac ggtgccaagc
     2581 gtcaccagtg cgatcatata ccaacgtaac cctttaattt tacgcatgta aaacctcatc
     2641 gttttgttat atccgcagga agcgcggcca tcatcccgcc agaggctgaa gatgttagtt
     2701 acgaccgggt aaccgaaaaa aaaccggcac gccccgaacg ttgccatgaa agtttcgtgc
     2761 taattcggct tccgtaccgg ttaacccgat tcatctaaca aatgaatgaa tcggcaattt
     2821 gcattccgtc gacttatgat ttgcgacggc agaaagatag cttgtcatac aactttaaaa
     2881 ggtgagagcc aacataaatg tgcgaatatt tgtagggaca ttacctgacg acagcgaggc
     2941 cagtactggc gcggcctgca gcgagattta ccactttgag agtaattttt ttaactacgt
     3001 ttattgatct aactcacgaa aatatcttcg gactctggaa attggtgtga taactttgtc
     3061 agcatcgcac cataagcaag ctagctcact cgttgagagg aagacgaaaa tgactccgtt
     3121 tatgactgaa gatttcctgt tagataccga atttgcccgc cgtctgtatc acgactacgc
     3181 aaaagaccag ccgattttcg attaccattg ccatttgccg ccgcagcaga ttgcggaaga
     3241 ctatcgtttt aaaaacctgt atgacatctg gctgaaaggc gatcactaca aatggcgcgc
     3301 tatgcgtacc aacggtgtgg ccgagcgtct gtgtaccggt gatgcgtctg accgtgaaaa
     3361 atttgacgcc tgggcggcga ctgttccgca cactatcggc aacccgttat accactggac
     3421 gcacctcgaa ctgcgtcgtc cgtttggtat cactggcaaa ttgctttctc cgtcaactgc
     3481 cgatgaaatc tggaacgaat gtaacgaact gctggcgcag gataacttct ccgcgcgcgg
     3541 catcatgcag cagatgaacg tgaaaatggt cggcaccacc gatgacccga tcgattctct
     3601 ggagcatcac gcagagatcg ccaaagacgg ctctttcacc atcaaagtgc tgccgagctg
     3661 gcgtccggac aaagccttca acatcgaaca ggcgaccttt aacgactaca tggcgaagct
     3721 gggcgaagtt tccgataccg acattcgccg ctttgctgac ctgcaaactg gcttgaccaa
     3781 acgtctggat cacttcgccg ctcacggctg taaagtgtct gaccatgcgc tggacgtggt
     3841 gatgtttgct gaagcgaacg aagcggaact ggacagcatt ctggcgcgcc gtctggctgg
     3901 cgaaaccctg agcgagcacg aagtggcaca gttcaaaact gcggtactgg tgttccttgg
     3961 tgccgaatat gcacgtcgcg gctgggtaca gcagtaccac attggcgcgc tgcgtaataa
     4021 caacctgcgt cagttcaaac tgctggggcc ggatgtaggc tttgactcca tcaacgaccg
     4081 tccgatggca gaagagttgt ctaagctgct gagcaagcag aacgaagaaa acctgctgcc
     4141 gaaaaccatt ctgtactgcc tgaacccgcg cgataacgaa gtgctgggca ccatgatcgg
     4201 taacttccag ggcgaaggta tgccgggcaa aatgcagttc ggttccggct ggtggtttaa
     4261 cgatcagaaa gacggtatgg aacgtcagat gacccaactg gcgcagctcg gtttgctgag
     4321 ccgctttgtc ggtatgctga ctgacagccg tagcttcctg tcatacaccc gtcacgaata
     4381 cttccgccgc attctgtgcc agatgatcgg tcgctgggtg gaagcgggcg aagcaccggc
     4441 ggacatcaac ctgctgggcg agatggtgaa aaatatttgc tttaacaatg cgcgtgacta
     4501 cttcgccatt gaactgaact aaggtctggg gttgatatgc aatacatcaa gatccatgcg
     4561 ctggataacg tcgcggtcgc tttagcggat ttggctgaag gcacagaagt cagtgtcgat
     4621 aaccagactg ttacgctgcg ccaggatgtt gctcgtggac ataaatttgc gttaacggat
     4681 atcgcaaaag gggccaatgt catcaaatat ggcctgccga ttggttatgc attggcggat
     4741 attgcggcgg gggaacacgt ccacgcccac aatacgcgca cgaatctgag cgatctggat
     4801 cagtatcgct atcaacctga ttttcaggat ctgcctgcgc aagcggcaga tcgtgaagtg
     4861 cagatctatc gtcgcgctaa cggcgatgtc ggggtgcgta acgagctgtg gatcctgcca
     4921 accgtgggct gtgtcaacgg catcgcgcgg cagatccaga accgttttct gaaagagacc
     4981 aacaacgctg aaggtaccga cggcgtgttc ctcttcagcc acacctacgg ctgctcacag
     5041 ctgggcgacg atcacattaa tacccgcacc atgctgcaaa acatggtgcg ccacccgaac
     5101 gcaggcgcag tgctggtgat tggtctgggc tgtgaaaaca accaggttgc cgcattccgt
     5161 gaaacgctgg gcgatatcga tcctgaacgc gttcatttca tgatctgcca acagcaggat
     5221 gatgagatcg aagccgggat cgagcatttg catcagctgt ataatgtgat gcgcaacgat
     5281 aaacgcgagc caggcaaact cagcgaactg aagtttggtc tggagtgcgg tggttctgac
     5341 ggtctttctg gtattactgc taacccgatg ctggggcgtt tctctgacta cgtgattgct
     5401 aacggcggta ctaccgtact gaccgaagtg ccggagatgt ttggcgcaga gcagttgctg
     5461 atggaccatt gccgcgacga agcaacgttt gaaaaactgg tcaccatggt caacgacttt
     5521 aaacagtact ttattgccca tgatcagccg atctacgaaa acccatcacc ggggaacaaa
     5581 gcgggcggta tcaccacgct ggaagacaaa tcacttggct gtacccagaa agcgggttcc
     5641 agtgtcgtgg ttgacgtgct gcgttacggc gagcgtctga aaacgccagg gctgaacttg
     5701 ttaagtgcgc cgggtaacga tgccgtagcg accagcgccc tggcgggtgc gggctgccat
     5761 atggtgctgt tcagtactgg tcgcggcacg ccatacggtg gatttgtgcc gacggtgaaa
     5821 atcgccacca acagtgaact ggcggcgaag aaaaaacact ggctcgactt tgacgcgggt
     5881 cagctgatcc acggtaaagc gatgccgcag ttgctggaag aatttatcga caccatcgtt
     5941 gagtttgcca acggtaaaca aacctgcaac gagcgtaacg acttccgcga actggcgatc
     6001 ttcaaaagcg gcgtaacgct ataaagtcga aatgagttgt taataaaaaa cggcgtttca
     6061 taatgtgaag cgctgtttgc ttttccatac ctgataagga tttatcatga ccgcgtattg
     6121 gctggcccag ggcgtgggtt tcatcgcctt tctgattggt atcacaacat ttttcaatcg
     6181 tgacgaacgt cgcttcaaaa agcagctttc ggtctatagc gccgttattg gcgtacattt
     6241 ttttcttctg ggcacctatc ccgctggtgc cagtgccatc cttaatgcca ttcgtacatt
     6301 gattacctta cgcacgcgca gcttatgggt aatggcgatt tttattgtgc tgactggcgg
     6361 aattggcctc gcgaagttcc atcatcctgt cgaactattg ccggttatcg gtacgattgt
     6421 cagtaccagg gcgctgttcc gctgtaaagg gctcaccatg cgctgcgtga tgtggttttc
     6481 aacgtgttgc tgggtgattc acaacttctg ggcggggtcg ataggcggca caatgattga
     6541 gggtagtttt ctgcttatga atggcttgaa tatcattcgt ttctggcgga tgcagaaaag
     6601 gggaattgat ccgtttaaag tagagaaaac ccctcccgcc gtagacgaaa ggggttaaac
     6661 aattaattac gcagggcgct atttgccaga cgatcgtctt ccgcctggca agctgccgca
     6721 gtgaacagca cgtcagttga agagttcagc gcggtttcgc aagagtcctg caatacgccg
     6781 atgataaagc cgacggcaac cacctgcatg gcgatatcgt tcgaaatacc gaacatatta
     6841 caggccagcg ggatcagcag cagagaaccc cccgccacgc cggatgcgcc acaggcacac
     6901 agagaagcca ccacgctcaa cagcagcgcc gtgggcagat cgaccgggat acccagcgta
     6961 ttaaccgcag ccagcgtcaa cacggtaatg gtgattgctg cgcccgccat attgatggtg
     7021 gcacccagcg gaatagaaac ggaataggta tcgcgatcca gattcagctt ttcacacagt
     7081 gccatattca ccggaatgtt cgccgcagag ctgcgggtga agaaggcata cacgccgctt
     7141 tcgcgcaggc acagcagcac cagcgggaac gggttacgac gaattttcca ccacaccagc
     7201 aatgggttaa ccaccagcgc caccagtaac atacagccaa ccagcacgac cagcagttgc
     7261 gcgtagcccc acagtgtgga gaaaccggtg gttgccaggg tagaagaaac cagaccaaaa
     7321 ataccaatcg gtgcgaagcg aatgaccagt ttcaccataa aggtgacggc attcgacaga
     7381 tcgttgacca ggtttttggt ggtctcgtta ccgtgacgca gtgcgaaacc gaggccaatt
     7441 gcccacacca ggatcccgat gtagttacct ttcagcagcg cgtcgatggg gttggaaacc
     7501 atgctcatta ccagcccgcg catcacttct acaatgcctg acggtggcga aatatcaccc
     7561 gcgctactgg ataagtgcag ggtagaaggg aaggcgaagc tgaaaacgac tgcggccaga
     7621 gcagcagaga aggtacccag cagatagagg aacaaaatag ggcggatatt ggttttctgc
     7681 ccgtgctggt ggttagcaat agatgccatc accagcatca acaccaggat gggggcaacg
     7741 gctttcagtg cgccgacgaa caaagtacct aacagaccaa cagcttccgc cgcgggtttt
     7801 gagatccatg ccagaagaat ccccagaaca aggccgacca ggatttgttt taccaggctg
     7861 ccatgagcca gacgccggaa tagccccggt gaacgttgcg tagtcatttt tcgatccttt
     7921 cattgtgttg tcgcacatcc ctggtgcgtt ctgtcgacgc atctttcagg atgtaacaaa
     7981 gtgtttgcaa ggtcgagtat aaggaaagtt acagcttcgg gaagcgaaaa atgctggatt
     8041 ttgaagagag gtcatatttt gcaacttaat tgttacattt gtttgacata aacagaggga
     8101 aggactggct actaaggctg attagataac atatgggcaa aactatttgg aatatgagaa
     8161 cggttgcgct cctttaatgt gctatgccat ataaagtcac tggcgcaggg agcgcgcagg
     8221 gggcggccaa tcgccgccgc cccctgcccc cccaggctct ggcgaacaaa atcgccgctg
     8281 cgcgattccc tcagcttatc ccttgcggct accgggtcgg gcgcaaggga acgtccctgt
     8341 aagatgcgcc ctcgccgcgc atccatgcgc gtcgccccgg cctccaggga acgcttcggc
     8401 gattttgacg ccaccaacag ccgtgcggtc tttttgtaaa gagctacaag ccaattacat
     8461 aattaatagc tcacctttgt ctggaatgag ttatctctag gaatggctta atatacagcg
     8521 aatcattctc cccgctgctt atcatgccga taattcaccc aggcgttgat aataaacgtc
     8581 atcaccagaa tgccaaacac cacgcccagc gagacggcga ttggaatatg gtagaagtcg
     8641 acaatcagca tcttgatacc gataaacacc aggatcaccg ccaggccata tttgagcatc
     8701 gagaaacgct ctgctacgcc cgccagcagg aaatacatcg cacgcaggcc gaggatcgca
     8761 aacaggtttg aggtcagcac aatgaacggg tcagtggtca cggcgaagat agccggaatg
     8821 ctatccacgg cgaaaatcac gtcgctcaat tccaccagaa tcagtaccag catcagcggt
     8881 gtggcgtaca gcaatccatt cttacgcaca aagaaatgct cgttgtcgat ggtgtcggtc
     8941 atgcgcaaat gaccgcgtag ccagcgcacc agcggcttgt tgccaatgcc tgattcatct
     9001 tcatgggcga gcgccatctt cacgccggta aacagcagga aggcaccgaa gatatacagg
     9061 atccagtcga actgcgaaat tagccagctg ccagtgaaga tcatgatggt acgcagaaca
     9121 atcgccccga gcacgccata caccagcacg cggcgttgta atgccgccgg aacagagaaa
     9181 tagctgaaca acatcagcca gacaaagacg ttatcgaccg ccagcgattt ctcaatcaga
     9241 taacccgtga gaaaggccag tgcctgtgga tcggcaacgg cgcgaccttc ggtttgcacc
     9301 agataccacc agaaagcggc gttaaacagt aacgacagcg tcacccaaac cagcgaccag
     9361 gccgcagcct gtttcatggt catggcatgt gccccacgac gcccctgcaa caacaggtcg
     9421 atagcctgca taatggcgac aacaacagcg aatccgcccc atagcaacgg cgtgccgaca
     9481 gtattcatag aagttcctta cacataaaaa aaacggccaa cgtcggaaga cgtcagccgc
     9541 tgctttttat gcatagacct cgccttccgg caaggtctca cttacaacaa aaaaggaata
     9601 cgtctgcgta ttcctttcgg gttgcccggt gaccggatgt ggtttttcac acatcgtaat
     9661 gacgatcgac cggcaatgaa gttactcccc tttgcaggta acaaagtatg acagaccatt
     9721 cagccagtca atggtctgtt acataccttt tacactgttt tactttggca attatagttt
     9781 tacgctatct gccggaaaaa tcaccccagt ctggcggcgg atctcagtca gcagtttggc
     9841 ggtgatgcga ctgaccgcca gccctggatg atccaccaga tgctcatcca ccagggtagc
     9901 aaacagctct gcttcgtaga gcatggtatt aatatgctgc ggctgggtga gatcctgcat
     9961 ctggctgcca cgcggcacga agcacacttt ctggcattca gacagttttt caatcaccag
    10021 cgatcccgct tcgccctgaa tctcgctttc caggacagaa tcactgacct ttgagtgcag
    10081 caacgtaacg ctgaaatcac cgtaatccat caccaccacg ccgtgggcat ctacgccgct
    10141 tgccaacaaa ctggcggttg cctgcacgct tttcggttca ccgaataatg ccaccgccga
    10201 cgccaggcag taaaagccga tatccataat tgaaccgtta gagaatgccg gattaaaggt
    10261 gttgggattc tcaccatcca ggtaacgttg ataccgcgag gaatactggc aatagttgaa
    10321 aaagacttta cgcaatttgc cgactttcgg cagcgcctgg cgcagcaaat gaaagttcgg
    10381 caggctggcg gttttaaatg cctcaaacag caccacctga ttttcccgcg cacaggcaat
    10441 ggcggcatcc acttccgcca gattcgacgc cagtggtttc tcgcaaatca catgaatttt
    10501 atggctaagg aaaagttgtg tctgggaaaa gtgcagggca ttcgggctgg caatatacac
    10561 cgcgtcaatg gcatcgcttt ccgccatcgc ttccagcgag gtaaacagat gctcgacaga
    10621 aaaatcattg gcgaagtgct gggcctgttc aaggctgcgg gaatatacgg cggttaactt
    10681 gtatttaccg ctctcatggg cggcctcgac gaactggcga gtgatccagt tcgtaccaat
    10741 cacagcgaaa cgtatcataa cgcgtggata ctccataaag ggattctgtc gtcaatgtag
    10801 cacgcctttt tcatcttcga cgtgcgcaga tacgcattat tcttttgccg gacagccatg
    10861 ctcactaaac ggcccaatca tgaccgatgg cccgagatat ttcggctggc gatggaggat
    10921 tttggcgtca atcacggcgc tgacacgagc gagtttctcc cgcagttgag tataaaaacc
    10981 gtgcttcata ttgaggtcag gcgcgttaaa accgatagcg tcgatgctgt actgttttgc
    11041 cagccagatg gcgcgttggt tatgaaattc ttgcgagata atggtgatat ggttttcacc
    11101 aaaaaccttt ttggcacgca ctaccgaatc cagcgttgag aatccggcat agtcgcagaa
    11161 gatcactttc gccggtacgc ctttagcgat caaagccttc tgcatacctg atgcttcatc
    11221 gtaattttta cgtccgttat cgccacttac cagtagccat ttcacttttc cggcgtggta
    11281 caacgctgct gcggtatcaa tacgtcgggt aaagtagcga ttacccggcc tggcccccag
    11341 caataagccc acgttacgcg ccggaactgc gttgacatcg ctccaggtca gctgcttgct
    11401 ggcgttgacc attactcgat cggcgataaa aatggtcgct cctgccacaa gtaacagtaa
    11461 gcaggcaatc tttagagtcc ggcgagaaaa acaaatacgg agaagaaggc ggggctgcat
    11521 ggtcgttatc cttaacgaaa ggggggaggt cgattttagg cgctaaagaa agaaaagata
    11581 acgcctgaca tcattttcag attttgtcct gcccaagcga caactgcgtt agccacagcc
    11641 gggtgtcgaa ctccagctgg tggtactgcg gctccatatg gcagcacaac tggtaaaacg
    11701 ctttgttatg ctctttctcc ttcaggtgcg ccagttcgtg caccacgatc atacgtaaaa
    11761 acggttccgg cgcgttgcga aacacagtag cgacgcggat ctctgctttt gctttcagct
    11821 tgccgccctg cacacgagaa acagcggtat gtaacccgag cgcgtttttt agcacatgga
    11881 tcttattgtc atacatcact ttattgatcg gcggggcatt gcgcagaaac tgatttttta
    11941 gatcctgagt atattgccag agggctttat cggtggcgta gtcgtgtgtt cccggatagc
    12001 gttttgccag cacatcgccc agacgctgtt cgttaatcag cgttcgcacc tgggaaagta
    12061 gctgctcggg ataaccctga agataagtaa gattgctcat aaccgcccac gaaaaagaga
    12121 aaaagggtat actcacgcac ccttttcagg ggcaacgtcg aaattttatc attcaggagg
    12181 gccgatgagc cacttagaca acggtttccg ttcactgaca ctacaacgtt ttccggcgac
    12241 ggatgacgtt aacccgctac aggcgtggga agcggcggat gaatatttgc tgcaacagtt
    12301 ggacgacaca gaaatccgcg gcccggtgtt gatcctgaat gatgcctttg gtgcgttaag
    12361 ctgcgcgctg gcagaacata agccgtacag cattggcgac tcatacatca gtgaactggc
    12421 gacgcgcgag aatttacgcc tcaacgggat tgatgagtcg agcgtgaagt ttctcgacag
    12481 caccgccgac tacccgcaac agccgggtgt ggtgctgatc aaagtgccga aaacactggc
    12541 attgctggaa caacaactgc gtgcgctgcg caaagtggtc acgtcggata cacgtattat
    12601 tgccggtgcc aaagcccgtg acattcacac ttccacgctg gaactgttcg aaaaagtgct
    12661 cggcccgacc accaccacgc tggcatggaa aaaagcgcgc ctgattaatt gtacgttcaa
    12721 tgaaccgccg ctggccgatg cgccgcagac cgttagctgg aagctggaag gtactgactg
    12781 gactatccat aaccatgcga atgtcttctc ccgcaccggg cttgatatcg gcgcgcgctt
    12841 ctttatgcaa catctgccag agaatctcga aggggagatt gtcgatctcg gttgcggtaa
    12901 tggcgttatt ggtctgacgc tgcttgataa aaacccgcag gcgaaagtgg tgtttgtcga
    12961 tgaatcgccg atggcggttg cttccagccg tttgaacgtt gaaaccaaca tgccagaggc
    13021 gttggatcgc agcgagttta tgatcaacaa cgcgctctcc ggcgtggagc ctttccgctt
    13081 taatgctgtg ctctgcaacc cgccgtttca ccaacaacat gcgctgaccg ataacgtcgc
    13141 ctgggagatg ttccaccatg cccgccgctg cctgaaaatc aacggcgagc tgtatattgt
    13201 tgccaaccgt cacttggatt acttccataa actgaagaag attttcggca actgcaccac
    13261 catcgccacg aataataaat ttgtggtgct gaaagcagtg aagctggggc gtcgtcggta
    13321 agattgggag ttacctgccg gatgcggcgt taacgcctta tccggcctac gttcagcacg
    13381 ttactcccag gccggataag acgcggcaag cgtcgcatcc ggcaatgtct gcccagttct
    13441 ggaatcgcgc ttccataaaa caaaaaatcc ctctcaccat cctctacatt ctcttgttta
    13501 gcgtttttct acgtttattc ttccgtcaca cagataaatt catacgttgc caatctgtca
    13561 acggatgtta tcatattgcc aatttgtcaa cggacgtgat gaagaatgca cctgataact
    13621 caaaaagcat tgaaagatgc tgcggaaaaa tacccgcaac ataaaacgga gttggtggct
    13681 ctggggaaca cgattgctaa gggatatttc aaaaaacctg agtcattaaa agcagtattc
    13741 ccatctctgg ataacttcaa atatctggat aagcattatg ttttcaatgt tgggggcaat
    13801 gaattacgtg ttgtagcaat ggtctttttt gaatcgcaaa agtgctacat acgtgaagtt
    13861 atgacgcata aagaatacga tttctttacc gctgttcatc gtactaaggg gaaaaaatga
    13921 ttgcgattgc cgacatcttg caagcaggag aaaagctaac tgcggtggca ccttttctgg
    13981 cgggtattca gaacgaggaa caatacaccc aggcgctgga actggtagat catctgctgc
    14041 tcaacgatcc tgaaaacccc ttgctggatc tggtgtgtgc caaaataacc gcgtgggaag
    14101 aatcagcgcc cgaatttgcg gaatttaatg ccatggctca agccatgcct ggcggtatag
    14161 ccgtgattcg tacccttatg gatcaatatg gtttaaccct tgccgatctg ccggaaattg
    14221 gcagtaaatc tatggtgtca cgcgttttga gcgggaagag gaaattaacg ctggaacacg
    14281 ctaaaaaatt ggcaacgcga ttcggcattt ctcccgcctt gtttattgat taacgcgacg
    14341 tgccggatgc gttgcatccg gcgcttcaaa taacgattta aatctccagc gccagccgtg
    14401 ttccctgggc aattgcccgt cgtgcgtcca gctccatagc cacatcgcag ccgccaatta
    14461 aatgcacagt tttcccgcta tcaatcagcg gttgcgccag cgcgcggttt ggctcttgcc
    14521 ctgcgcagat caccacattg tccacagcta atacctgcgt ttcgccgttg atcaccacat
    14581 gcagcccgtc atcgtcaatc ttctgataac ttacgcctgg gatcattttc acaccccgcg
    14641 agagcagggt ggtgcgatgg atccagccgg tggttttgcc taacccctgt cccggtttgc
    14701 tggctttgcg ctggagcatc acaatttgcc gtgggctacg cgggatctgc attccctgcg
    14761 ggcttaagcc accagcctgt tgtaggctgc tgtcgatccc ccactcatta cagaacctgg
    14821 cgatattctg gctggtggat tcgcccggct gacttaaata catcgccgta tcaaaaccaa
    14881 tcccgccaca accgatgatg gcaaccttgt tgcctaccgg cgctttgtcg cgcagtacat
    14941 cgagataact caataccttc ggatgatcga tcccgtcgat aggcggaacg cgcggcacga
    15001 tcccactggc gaggatcgtt tcatcgaacg cctgtaactg atccgccgtc acggtgtgat
    15061 tgagtttcag cgtcacgccc gtcacttcga tcatccggtg gtaatagcgc agcgtttcgt
    15121 aaaactcctc tttgccgggg atctgtttgg cgatattaaa ctgcccgccg atctcgctgt
    15181 gggcatcaaa caatgttacc tgatgcccac gcgccgccgc gttaatggca aacgccagcc
    15241 cagcaggtcc cgcaccgacc accgccagat tttttttctg cacggcagga aggattggca
    15301 ttttggtttc gtggcaggcg cgaggattca ccaggcacga ggtgactttg ccaacgaaga
    15361 tctgatcgag gcaggcctga ttgcagccaa tgcaggtgtt gatctcatcg gctcgccccg
    15421 attgcgcttt tgacagcagt tccgcatcag caagaaacgg tcgtgccatc gataccatat
    15481 cggcatcgcc gcgcgagaga atatcgtcgg caacctgcgg atcgttaatc cggttggtgg
    15541 ttaccagcgg cagcgagatg tggcctttca gtttgcgcgt gacccagcta aatgcaccgc
    15601 gcggcacggg cgtggcaatg gtcggaatac gtgcttcatg ccagccaatg ccggtgttga
    15661 taatggtcgc gcccgccgct tcaatggcct gcgccagctc taccgtttcg gcaaaagtcc
    15721 cgccgtcttc gaccaggtcg agcatcgaca gtcggtagat aataatgaag tcgttgccga
    15781 cgcgttcgcg caccgcacgc actacttcta cggcaaatcg catccggttg cggtaatcgc
    15841 cgccccactg gtcactacgc tgattggtgt gcagcgtcag aaattcgttg atcaaatacc
    15901 cttcggaccc cattacctct acaccgtcgt atcctgcctc ccgtgccagt tgcgcgcagt
    15961 gggcgaaatc gtcgatcagt tgcaggatct cttcatgggt gagttcgtga ggaacgaaac
    16021 ggttgatggg ggccagcaat gcggagggag cgaccagatg cggttggtag ctgtagcgcc
    16081 cggtatgcaa aatttgcagg gctattttgc cgccttcctg atgtaccgct tcggtaatgg
    16141 tgcgatggtg tgggatctgg ctggcgtcgt tgagcattgc gccaccttcc atgccaacgc
    16201 ctgttaaatc tggtgcaatg ccgccgctga caatcagcgc cacgccgtga cgggcgcgtt
    16261 cggcataaaa cgctgccagc cgctcggcac cgtccgggta ttcctccagc ccggtgtgca
    16321 ttgagcccat caacacgcgg ttttttaacg tggtaaaacc taaatccagc ggggcgaaca
    16381 gcgacgggta gctcataaaa ttgtccagta tgtaaaataa ttgttatgtg gtcggatgag
    16441 ttctaattta gccgtcgccg gagaaaaggg aaaaggggag tgcggggttt gtgatgggat
    16501 tcaaaaagaa tacgcccggt ggtaacgccg gatgcgacgc ttgccgtgtt ttatccggcc
    16561 tgggggattg cacatgtagg gcggataagg cgttcacgcc gcatccgcca gtggcgcggt
    16621 gcagatgccg gatgcgacgc ttgtcgcgtc ttatccgacc tacgggaacg cacatgtagg
    16681 gcggataagg cgttcacgcc gcatccgcca gtggcgcggt gcagttgccg gatgcaacgc
    16741 ttgccgcgtt ttatccggcc aggaggattg cacatgtagg gcggataagg cgtttacgcc
    16801 gcatccgcca gcagttgcaa attattgctt acggaaaaaa tcgttataca acatatacaa
    16861 atgcgcggca ctccaggaga aatttggtgc gccttgctgc gcgccagtca gcgggttgta
    16921 attctcctga attgggccat cggcggttaa tcctttggcg tgccggaaga acgtatccgc
    16981 cagcttcagg gcatcatcac gataaccgta acgctccatc cctttcagag caaaccagaa
    17041 ctgatccacc catacgcgcc cgcgccagta gatatcagcg ccaaaagccg gattggttaa
    17101 cgccgccgtt cccagcggga caaaggtgtt gaactcttta ggatcgagca tcaccttcac
    17161 caccgcgtcg gcattggcct gcgttgccgc accgttaaac agcggcgacc agccttccgg
    17221 ccctttaccg cgctcaacaa tcggtttgcc cgcgcagccg ttcgccagtg gtttatcttc
    17281 aatacgtacg tcatagtaga actgggtagt cgggtcgaac atacaggtgt tgatgtagtc
    17341 cgcgagctgc tgtgccaact ggcgatagcg tttggcctct tctggcttac cgaggatggt
    17401 tgccatctcc gccagataat ggttatcgct gtacatatag ctggcctgat ccaccgactc
    17461 ctgcaatagc gagtagccca gcaacgttcc gtcctgactg cggttttcgg cgaatttcac
    17521 cgtccagtcg ctacgtttgc caccattagc gacatattta tccaactgtt ctttgtcgat
    17581 aaaaccaaag acggcggcat catcacgccc cgattcccac gacgcagcga cctgtgccgg
    17641 aatttccaga ctgtcgtact ggcctttctc caccacgcgg gcgtagttgt tcagcccaga
    17701 ctgcgtctct tctttgttgc ctttcttcac cgcaaacagc atctcgccgc tctcagtgtt
    17761 gtgggctttg tcgcgggtcg cgccatattc cggcacgccg ttgccgttgt gatcgcggtt
    17821 acgtaaccac cagtcgtgat aggccaccag tttcgggtac atctctgcca accaggcttt
    17881 atcctgggtg acgttgtaca cttctatcac cgaccaggcg gcaaggctgg gtttggtatt
    17941 acgttcgttc cagttgccgc catcgccacc acgctcgggg ctaaggttcc acgctatcag
    18001 gtcggggaca aagcccacat cctgcggacg cacgcggtcg ccaggctgga tctgccagga
    18061 gaagaccgcg cggatattct ctttggcgat gtccggattg aaatgcgcca tcgcaaacgc
    18121 ctgcttctag gtatcccacg gccaggtctg attgccggag aaccagcgcc cggtcaccga
    18181 cggtgtaacg gtgttaaatt tcaccgcacc gcccggtgag cgccagttac cgttgagcgt
    18241 ttcgatcgct ttcaccgcga cgcgcgtctg ttccggcgtc gcatccggat tggttaaccc
    18301 tttcttcagg tattcttccc agcgttgctg cgaggcggtg agataaaacg ccggacgcgc
    18361 cagaatatcg cggatctgca tttgctcttt gctaacttcc tgagcggtca gcagatggga
    18421 ataggtggtg tagagcgtgg tcgaaccgtt gatatgcgcc ttactggtaa agcgattacc
    18481 gttgatttca gtctgcaccg gcagggattt atgcacctga tattccgatt cgccggaggt
    18541 cagcagatcc caggtggcgc gcactttgcc aaaggtgact ttcaggccat cacgggtggc
    18601 gctgattttg cgctgatagt cagggtattc gccagcaatg gttttatcgg aaagcggttt
    18661 cccttctttc gcttccagtt tttccagcag ttcgccgtcc cacaccagat ccagcggttt
    18721 attgctggtg attttggttt ccagtagtga cgtgcgcggc gtggcgaagc gcagagtcat
    18781 ttcgacttgc acatcttttg ctgtcagttt ttgcaccagc gcaccgggaa tactgtatgc
    18841 ctccagcgta aagtcgactt tcttgccgtc ctgccagacg gtcaggcggt cgaaattgct
    18901 ggccataaag ttgatgtact cttccgtcag cagcgcaacg cccggaaagc cgcccatggt
    18961 gttagggccg tctggcaaca gatgaccatg ccaggctccg agatcgaaaa acggattaaa
    19021 acgctggtga tcgtcgtaat cgtaatcctt catgtactgc ggcgcgccag tacggttaat
    19081 cacgttttta taattgtcgg cgttagcggc atgggcggaa aaacttatca gcagagcgca
    19141 ggttactggc gttaaaatag tttttatttt catgaaatta cagtccttat taccagtaga
    19201 aatattgcat caggaagatt tggtcgctgg gatcgtgaga ggcatttttc atgtagaagc
    19261 ggctatcaaa agccgtggcg aaacgtccgt cgccgtattc gtaccagata ccaaactgca
    19321 tgaaagaggt ggtttcatcg tcagcgtggt cagggcgatg tttggcgtag gtgtaagcgg
    19381 tggagagata aacgcccttt aacgcttcat acatggcgct caccatcatc ccactttcac
    19441 ttcccggtac gtccagcccg tcggcgcgtc cggtatggtg ccaggcgcga gcggcaaagt
    19501 taggagttag caggcccgtg agatagagct gtcctgtgcc gtcggtgatt tccagaccgt
    19561 tcatccaggt gatgccttcg gcaaggtcat actggatgta accgttcatc attgccggat
    19621 aggtgtattt gtcgtcatag cgatcgtatt tgccaaaatg tagccaggct ttgctttcat
    19681 catgatgtcc ggcaggagtc gcggtgacgc tataacgaaa gttgccgctt aagttctgta
    19741 ccttcagcgc agtcataatg tcgcgggtat tgggaatgac gtagcccaga tcgggggtga
    19801 aatcgcccca ccattgcagg tcatccagcg aggaatcctg acgcagactg agcatgattt
    19861 cagtgccatc attggtacga taaccgccat agaaacggtt aattccgccc tcgaaaccac
    19921 cccagctatg gtctggcacc caggcattgc cgtcgtggtc ggcctgcacg gtccagcctt
    19981 cgccgtaaat caggccgaac caggagccgt acttcatctc caggccacct tcaatatagg
    20041 taccgtcgct gtatttatgt ttattctcac cctctaaatc catatatcca ccaaccccta
    20101 attcgccgta aaaacgaaat gaaggagaag atgtcgaggt aattgcgggt gtttttgtgt
    20161 cgtcatgttc tgccggacgt gcttcttctc ctgccgcaga aaaggcgtag caaaacggca
    20221 gagcaagtaa tgctctgcat ggtgcagtga ttaatttcat tgtgttaatc catgagctaa
    20281 agaaaaagta cagcctttta tcgttgtaat tataaaaata taaaggcaga aactattttc
    20341 cctctcctca tccaggaaga gggaaaatgc ctgctcattt tttattattc tgcttaatca
    20401 acattgctgg ctggcgtcgc ttcaatatgg cgctcttcag ccgttaatcc ctttatatat
    20461 ttactgtatt tccaccacgc aaagccaagg aagataacaa taccgccgac gttataaaaa
    20521 atgatggtca gaatattcgc gccagtcggg aatgtcgaag cgacaaaccc tacggcaaat
    20581 atcgcaatct gcattgaaac aacgataata ccggtgcggc gggagctcat acggaaatcg
    20641 cgtggcaggt gatctaattt ggcgcgtaaa ttcaggtaag ccagcatgat gaataacggc
    20701 ggaagcatgg acgctgcggc ggtcatatta ataatagtat tcatcagatc ctgcacggta
    20761 ttggaaccga gcatcgggat aatcatcagc gggatgacga tcaggaactg gatccacgct
    20821 gcgcgcgccg gaacgccgtt ttcgttcagt tcgacggttt tcttaccaaa gatgccttcc
    20881 gggatttcgg agaagaaaat tttcaccggc gttgcggtcc acatcagcag ggaaccgaac
    20941 atcgcggtaa aggacaccag accgacaaag cgattcatca acgcttccgg tagaccaaaa
    21001 tacgccgcca tgccatggaa tacctgcacc gatccgccgg taaatttcaa ctctttgctg
    21061 ctgacgaaga cgttaatcag caccgaggag acggaataca gtacgccgat aaaaatcccg
    21121 gcgaggatga tcactttaac gaacgatttc gaaccgcctt tgacgtcgtt aacgtacaca
    21181 gcgacggact ccgcgccacc tgcggccata aagatccagg tggtaacgcc gaggaacgcc
    21241 cagttgaagt tcgggatcat cgcgtcaacg gtgatggggt cagcaggctg tacgccgcca
    21301 accagcgccg tacctgccag taaaatgtag gagagcgtta acagcagcat cagcgttgaa
    21361 gtgacggagg taattggccc caacattttc gccccgttgg tggaaaccta ggtggagaag
    21421 gcgaacagca ccatactgat aatggtggtg gcaaccggcg tcataatata ttcgtatccg
    21481 aggaaggcat acgaagcata agcaataacg cgcggcaaca gtgaggtgaa aaagaacagg
    21541 tttacgaacc agtaggtata ggcagtaata aatgcccaac gtccgcccag cgaacttttt
    21601 acccacgcgt agacaccggc ttctgagttt ttatttaacg aaacaaattc tgcgatgatc
    21661 agacagaagg gaataaaata aaaaatcgtc gcgaggaaaa acatcggtgc cgaggccagt
    21721 ccaagctcaa tattattatt gataacgttg ttaaagctgt aaacggcagc aaaagtcagc
    21781 gagagcaagc cgaatttgcc gattgtatta cgtttggtat cagacataac acatctccga
    21841 aaatgtgtag ggtagcggtg gcggcaaact ccttttgccg ccgtagttgt tatttgttat
    21901 ggaaataacc atcttcgatg gtgactttga gaaccacttt tttgaccgcg ttattgcaga
    21961 taaaccgata cgcttcatgg atatcgcaaa taacgatttg cccttcgtgg acctcaacgg
    22021 tttctccgca gccttttaaa tattcacggt cagtttcatc acgataatat tccactacct
    22081 gtaatgtctc tttcggcgca tattcaattt tttgctgccc ttgcaggtag taat
//
LOCUS       DAJVUN010000061        21590 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.061, whole genome shotgun sequence.
ACCESSION   DAJVUN010000061 DAJVUN010000000
VERSION     DAJVUN010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 21590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.061"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..577)
                     /locus_tag="OQQ76_001897"
     CDS             complement(<1..577)
                     /locus_tag="OQQ76_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FimD/PapC N-terminal domain-containing protein"
                     /protein_id="HCS1968409.1"
                     /translation="MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDI
                     RQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQNNPDADLHACFIAIKKTLSSFGIK
                     VDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRW
                     DEGINALTINYDFSGSHTLRSDYGSQETDTSY"
     gene            complement(602..1333)
                     /locus_tag="OQQ76_001898"
     CDS             complement(602..1333)
                     /locus_tag="OQQ76_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001572122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HCS1968410.1"
                     /translation="MSRKSCLIRLFKTTVSCKLFTAIILSVFLGQPALTYAGVVIGGT
                     RGVYLSNNADKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEK
                     ILRIIHTKGVSLPDYRESVFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRL
                     IPEDAAPKVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPAN
                     SAGGQMTWRFINDYGAVSDPIKMTL"
     gene            complement(1381..1953)
                     /locus_tag="OQQ76_001899"
     CDS             complement(1381..1953)
                     /locus_tag="OQQ76_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1968411.1"
                     /translation="MKRNIIGGAFTLASLMLAGHALAEDGVVHFVGEIVDTTCEVTSD
                     TADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPAMYTQAAVRFDGTEAPGGDGDL
                     KVGTPLTAGNPGDFTGTGQAIAATGVGIRIFNQSDNSQVKLYNDSAYTAIDAEGKAEM
                     KFIARYVATNATVTAGTANADSQFTVEYKK"
     gene            complement(2255..4084)
                     /gene="glmS"
                     /locus_tag="OQQ76_001900"
     CDS             complement(2255..4084)
                     /gene="glmS"
                     /locus_tag="OQQ76_001900"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HCS1968412.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIMVVHNGII
                     ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV
                     IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLLKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE"
     gene            complement(4246..5616)
                     /gene="glmU"
                     /locus_tag="OQQ76_001901"
     CDS             complement(4246..5616)
                     /gene="glmU"
                     /locus_tag="OQQ76_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HCS1968413.1"
                     /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN
                     ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ
                     RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFYLRGTLTHGRDVEIDT
                     NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDVNLAAACTIGPFARLRP
                     GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR
                     RPVKKK"
     gene            complement(5967..6386)
                     /gene="atpC"
                     /locus_tag="OQQ76_001902"
     CDS             complement(5967..6386)
                     /gene="atpC"
                     /locus_tag="OQQ76_001902"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HCS1968414.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQSGNVTVLADTAIRGQDLDEARAMEAKRKA
                     EEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM"
     gene            complement(6407..7789)
                     /gene="atpD"
                     /locus_tag="OQQ76_001903"
     CDS             complement(6407..7789)
                     /gene="atpD"
                     /locus_tag="OQQ76_001903"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HCS1968415.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     EEAVEKAKKL"
     gene            complement(7816..8679)
                     /gene="atpG"
                     /locus_tag="OQQ76_001904"
     CDS             complement(7816..8679)
                     /gene="atpG"
                     /locus_tag="OQQ76_001904"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HCS1968416.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE
                     MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(8730..10271)
                     /gene="atpA"
                     /locus_tag="OQQ76_001905"
     CDS             complement(8730..10271)
                     /gene="atpA"
                     /locus_tag="OQQ76_001905"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HCS1968417.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKNGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(10284..10817)
                     /gene="atpH"
                     /locus_tag="OQQ76_001906"
     CDS             complement(10284..10817)
                     /gene="atpH"
                     /locus_tag="OQQ76_001906"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HCS1968418.1"
                     /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV
                     SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(10832..11302)
                     /gene="atpF"
                     /locus_tag="OQQ76_001907"
     CDS             complement(10832..11302)
                     /gene="atpF"
                     /locus_tag="OQQ76_001907"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HCS1968419.1"
                     /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(11364..11603)
                     /gene="atpE"
                     /locus_tag="OQQ76_001908"
     CDS             complement(11364..11603)
                     /gene="atpE"
                     /locus_tag="OQQ76_001908"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HCS1968420.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(11650..12465)
                     /gene="atpB"
                     /locus_tag="OQQ76_001909"
     CDS             complement(11650..12465)
                     /gene="atpB"
                     /locus_tag="OQQ76_001909"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HCS1968421.1"
                     /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID
                     SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL
                     ILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(12474..12854)
                     /gene="atpI"
                     /locus_tag="OQQ76_001910"
     CDS             complement(12474..12854)
                     /gene="atpI"
                     /locus_tag="OQQ76_001910"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HCS1968422.1"
                     /translation="MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGG
                     LAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
     gene            complement(13471..14094)
                     /gene="rsmG"
                     /locus_tag="OQQ76_001911"
     CDS             complement(13471..14094)
                     /gene="rsmG"
                     /locus_tag="OQQ76_001911"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HCS1968423.1"
                     /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV
                     RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR
                     FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI"
     gene            complement(14158..16047)
                     /gene="mnmG"
                     /locus_tag="OQQ76_001912"
     CDS             complement(14158..16047)
                     /gene="mnmG"
                     /locus_tag="OQQ76_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HCS1968424.1"
                     /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV
                     LYRQAVRTELENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLTFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
                     HGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS
                     GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            complement(16426..16869)
                     /gene="mioC"
                     /locus_tag="OQQ76_001913"
     CDS             complement(16426..16869)
                     /gene="mioC"
                     /locus_tag="OQQ76_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HCS1968425.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDL
                     SASGIWLIISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAI
                     DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK"
     gene            complement(16959..17417)
                     /gene="asnC"
                     /locus_tag="OQQ76_001914"
     CDS             complement(16959..17417)
                     /gene="asnC"
                     /locus_tag="OQQ76_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HCS1968426.1"
                     /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT
                     GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP"
     gene            17569..18561
                     /gene="asnA"
                     /locus_tag="OQQ76_001915"
     CDS             17569..18561
                     /gene="asnA"
                     /locus_tag="OQQ76_001915"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HCS1968427.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEECLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPF
                     LPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY
                     DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL"
     gene            complement(18566..20017)
                     /gene="viaA"
                     /locus_tag="OQQ76_001916"
     CDS             complement(18566..20017)
                     /gene="viaA"
                     /locus_tag="OQQ76_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HCS1968428.1"
                     /translation="MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA
                     AITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL
                     NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ
                     ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQ
                     LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDASGSMGG
                     FNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGG
                     TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(20011..21489)
                     /gene="ravA"
                     /locus_tag="OQQ76_001917"
     CDS             complement(20011..21489)
                     /gene="ravA"
                     /locus_tag="OQQ76_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001339853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HCS1968429.1"
                     /translation="MSGKNFPPEQFVGKGLYERSHAIRLCLLAALSGESVFLLGPPGI
                     AKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEA
                     EIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEA
                     LYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITL
                     PDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPIDLILLKD
                     CLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTVIR
                     LGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIR
                     GKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESD
                     WRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC"
BASE COUNT         5275 a         5601 c         5304 g         5410 t
ORIGIN      
        1 gataactggt atctgtctct tgtgaaccat aatctgaacg tagtgtatgt gaaccagaaa
       61 aatcgtagtt gatggtgagc gcgttaatcc cctcatccca acgcgtgggg ctgatgtaat
      121 cataagccat cgcgtccatg tagatttggg gaatggatat attcagctgc aatttatcac
      181 tgtcaaactg ccaggatgag ccttcaatac gtggagcagg atcgaggcaa accgtctcat
      241 ccacatcatt gaacgatttg agcgcatcaa cttttatgcc aaaggaggac agtgtttttt
      301 taatggcaat aaagcaagcg tgcagatcag catctggatt attctgaaca aatgtcacat
      361 cctgacgttc aaacatttta ccgttgataa aaatatcaac gctataaaca cctgggggca
      421 tcaggtttgc ccgattaaac tggcgaatat cgactccgga ttgatggtcg atttccagaa
      481 gcgccggatt gaatacactg acctcggcca tcaggttttg cgagaaaatc agacacgtcc
      541 ctgccgtgag gccaaccact attctggtcg tcatcataat acgcctatcc ttatcccttg
      601 cttacagcgt catttttatc gggtcactga ctgcgccgta atcattaata aatcgccagg
      661 tcatttggcc tcccgcagaa ttagcaggta aaggtaacgt gagcgtttca aaaggacgga
      721 tcatattgag gggcacatca tggccatcaa cgatgacatc catcacactg atatgaattg
      781 ggttgggatt ctctgctatc agatttcgcc cttcccggcg ccatttcact ttcggcgcag
      841 catcttcggg aataaggcgg atatttgctg gtcgccagaa cagcttgata cgcgttttta
      901 ctgctatttc cagcgagttc gtcgctttgt tgctcgctga tggcggaata tttttaatat
      961 tcagccagaa gactgactcg cgataatcag gcaatgacac acctttggtg tgaataatgc
     1021 gtaatatttt ttcttgcgaa ggttctaatc gtgatactgg cggaataacg gtaaacggcg
     1081 ctttgctttt atcctcttta ttaaatggat ctacccaagc ttggatgaga taaggtattt
     1141 tttcttcttt gctaaataca gaaatagatt tatcagcatt attacttaag taaacccccc
     1201 gcgtaccacc aatgacaacg cctgcataag ttaatgctgg ttggcctaaa aaaacgctga
     1261 gtataatcgc ggtaaataac ttacatgaaa ctgttgtttt aaagagcctg attaaacaac
     1321 tttttctgga cataacgact ccctggccaa agccaactga ataaaaaggc ccttgataaa
     1381 ttatttctta tattcgacag taaattgtga atcagcgttc gccgtaccag ccgttacggt
     1441 cgcattggtt gccacatagc gtgcaataaa cttcatttca gccttgcctt cagcatcgat
     1501 agcggtataa gcagagtcgt tataaagttt aacctgcgaa ttatcggact ggttaaaaat
     1561 acgaatacca acgccggttg ccgcaatcgc ttgtcctgta ccggtaaaat caccagggtt
     1621 gcctgctgta agcggcgtac ccactttcag gtcgccgtcg ccgccaggcg cttctgtacc
     1681 atcaaaacga acggctgctt gagtgtacat tgccgggcaa ttttcaagtt taatactgaa
     1741 cttctgtggc gacgccagac tacctacacc tgaaaatgca tttttactga ctttacccag
     1801 tgggacaatt tgatcggctg tatcggaggt aacttcacaa gtagtgtcga caatttcacc
     1861 gacgaagtga acaacaccat cttctgccag tgcatgcccg gccagcatta gagatgccag
     1921 agtgaatgca ccgcctataa tattacgctt cataaaaact ccattgatat aatatatcct
     1981 ttaccatgaa tcatcactta tattaataag tgtatttttg attcaaagga atagtacacc
     2041 aaagagacgg ctttatctaa aaataatatt aattacgcaa aaataaaata taaatttatt
     2101 gtttaaatat tatttaaaca gtaaaaaatc aagtttgtta tcagacatta atgataattc
     2161 agaatatatt tatatagaaa gatagatgaa tttattgatg tcagttataa aaaagggcca
     2221 ccggtcggca gccctttttt atctatgata gtgattactc aaccgtaacc gattttgcca
     2281 agttacgcgg ctggtcaacg tcggtgcctt tgatcagcgc gacatggtaa gccagcagct
     2341 gcagcggaac ggtgtagaag atcggtgcaa tcacctcttc cacatgcggc atctcgatga
     2401 tgtgcatgtt atcgctactt acaaaacccg catcctgatc ggcgaagaca tacaactgac
     2461 cgccacgcgc gcgaacttct tcaatgttgg atttcagttt ttccaacagt tcgttgttcg
     2521 gtgcaacgac gataaccggc atatccgcgt caatcagcgc cagcgggccg tgtttcagct
     2581 cgccagcagc gtaggcttca gcgtgaatgt aggagatctc tttcagcttc aatgcgcctt
     2641 ccagtgcgat tgggtactga tcgccacggc ccaggaacag tgcgtgatgt ttgtcagaga
     2701 aatcttctgc cagagcttca atgcgtttgt cctgagatag catctgctca atacggctcg
     2761 gcagcgcctg cagaccatgc acaatgtcat gttcaatgga ggcatccaga cctttcaggc
     2821 gagacagctt cgccaccagc atcaacagca cagttaactg agtggtgaat gctttagtgg
     2881 acgccacgcc gatttccgta cccgcgttgg tcatcagcgc cagatcggat tcgcgcacca
     2941 gagaagaacc cggaacgtta cagattgcca gcgaaccaag gtaacccagc tctttcaaca
     3001 gacgcaggcc cgccagggta tccgcggttt cgccagactg tgacaaggtg atcatcaggc
     3061 tgttacgacg cacggcagat ttacgatagc ggaattcaga ggcgatttcg acgtcgcacg
     3121 gaatacctgc cagcgattca aaccagtagc gggaaaccat accggagtta taagaagtac
     3181 cacaggcgag gatctgaata tgctcaacct tcgacagcag ttcgtcggcg ttcggtccca
     3241 gctcgcttaa atcaacctga ccgtggctga tgcgcccggt aagggtgttt ttgatcgcgt
     3301 tcggctgttc gtagatctct ttctgcatgt agtgacggta aataccttta tcgcccgcgt
     3361 catattgcag attggattcg atatcctgac gttttacttc cgcgccagtt ttatcgaaga
     3421 tgtttaccga acggcgagta atttccgcaa tatcgccctc ttcaaggaag ataaagcgac
     3481 gggtcaccgg cagcagcgcc agctggtcag aagcgataaa gttttcgccc atacccaggc
     3541 caatcaccag cggactacca gaacgtgccg ccagcagggt atccgggtga cgggagtcca
     3601 tgatcactgt accgtacgca ccgcgcagct gcgggatagc acgcagaaca gcctcacgca
     3661 gagtcccgcc ttgtttcagc tcccagttca ccagatgggc aatcacttcg gtgtcggttt
     3721 cagaaacgaa ggtatagcca cgcgctttta actcttcacg cagcggttca tggttttcga
     3781 tgatgccgtt atgcaccacc ataatgtgtt cagaaacatg cggatgcgcg ttagcttctg
     3841 aaggttcacc gtgggtcgcc cagcgagtgt gagcaatacc ggtgccgcca tgcagaggat
     3901 gttcttccgc tgcctgagcc agcatctgga ctttaccgag gcgacgcagg cgggtcatat
     3961 gaccttccgc atcaacaacg gccagaccgg cagagtcata tccgcggtat tccagacgac
     4021 gtaaaccttc aagaaggatt tctgctacat cacgttgcgc gatcgcgcca acaattccac
     4081 acatagtttt tgattccgat ttatatcgtt gtcggtcaac ctgtatgccc gttttttcgg
     4141 gcgccccgag ccttgtagag agtggggtta tttttatagt tactgcttgt gggagggaga
     4201 ttatgttatc tcctcatccc agatgaccgg attacccggc cagaattact ttttctttac
     4261 cggacgacgc cagccttctt tctgagtctg cggcacacgg ctgatagcta atgcattttc
     4321 gccgacatta cgcgtcacag ttgtacccgc agcaatggtc gcgcctttgc ctactgttac
     4381 cggggccacc agctgagtgt cggaaccgac aaacacatcg tcgccgataa tggtcttaaa
     4441 tttattcgca ccatcgtagt tgcaggtaat ggttcccgcg ccgatgttaa cgttatcgcc
     4501 aatttccgca tcgcccaggt aagtcagatg accagctttc gagcctttac ccagacgcgc
     4561 ttttttcatc tcaacaaagt taccgacgtg tgcaccttcc agcaactcag caccaggacg
     4621 cagacgggca aacgggccaa tagtacaggc cgctgccaga ttcacgtctt ccacaacggt
     4681 atacggactg atttcgcaat catcgccaat cacgctgttt ttaatcacgc aaccggtgcc
     4741 gattttcacg cgatgaccga gagtcacgtt gccctcgatg ataacgttag tatcaatttc
     4801 aacatcgcgc ccgtgagtaa gcgtaccgcg cagataaaaa cgcgccggat cgcgcagcat
     4861 aacgcctgct aacagcagtt tttcagcctg ttcggactgg taaacgcgct ccagacggga
     4921 gagttgcagg cggttattca caccttctac ttcgcttaaa cgttgcggat gaacggcgac
     4981 gatttcacgc ccttcctgat acgccagcgc aataatgtcg gtgatgtagt attcgccctg
     5041 agcattattg ttggtcagct tcgccagcca gcgtttcata tctgcgccgt tagcgatcag
     5101 aatgccggtg ttgatctcct gaatctgacg ctgctcgtcg gtggcatctt tgtgctcaac
     5161 aatgccggta actttgccat tttcacgggt gatacgtcca taaccggtcg gatcatccag
     5221 tttcaccgtc agcagaccaa tgccaccctg cggtttagca tcacgcaggc gctggagtgt
     5281 ttcgacagag atcagcggca cgtcgccgta gagcattaaa atgtcttcat catcggcaaa
     5341 gaaaggtgcg gcctgctgca ttgcatgacc cgtacccagc tgctctgcct gaagcaccca
     5401 gttaaggttg tcgtctttca gcgcctgttt aagcagatcg ccgccgtgac cgtacaccag
     5461 gtgaacgtgc gctgcgccta attcattcgc agcatcaatg acatgctgaa ccatcgcttt
     5521 cccggcaagg gtatgcagca ctttcggaag atcggaatac atgcgcgtgc ctttgcctgc
     5581 ggcaaggatc actacgctca tagcattatt caacatacgc gtcctgactg taatttgaga
     5641 acgaatttaa accgcttcac cttgaaaaaa ctacattttt ttcatcgtga aatggacaga
     5701 ggataaattg ttcaataacg gattatcccc gctgacgaaa gtgccatttt cgactatcgt
     5761 cacgcctttt gtctgcagaa aattaaggca gtaccttcat ttaagcgtca ggtggatgtt
     5821 tttgctctta tttcgatcaa tgaataaacg ggaaaacagg ggtgttttat atcagcagga
     5881 tctatgtgaa cgctcttcag gacggatcac gcgtaaaaaa aaaccagcct gtttccagac
     5941 tggcttttgt gcttttcaag ccggtgttac atcgcttttt tggtcaactc gataacgcgc
     6001 agctgcgcga tcgctttggc cagttccgca gacgcctgag cgtaatctac gtcgccgtga
     6061 gagctgctaa tgtgctcttc agccttacgt ttcgcttcca tggctcgcgc ttcgtcgaga
     6121 tcctggccgc gaattgcggt gtcggccaga acggtcacgt tgccagactg cacttcaaga
     6181 atgccgccag acagatagat aaactcttcg tgaccgtgct gtttcacgat gcgaatcata
     6241 ccaggcttaa tggcggtgag cagcggtgcg tggccagggt agatccccag ttcaccttcg
     6301 ctacccgtta cctggatttt ctcgaccaga ccagagaaca tttgttgctc tgcgctgacg
     6361 acgtccaggt ggtaagtcat tgccatatca ccctccgatt aaggcgttaa agttttttgg
     6421 ctttttccac agcttcttcg atggaaccga ccatgtagaa cgcctgctcc ggcaggtgat
     6481 cgtattcgcc ttccatgatg cctttaaagc cacggatggt gtctttcagg gagacgtatt
     6541 tacccggaga accggtgaat acttctgcca cgaagaacgg ctgggacagg aagcgctgga
     6601 tcttacgagc acgcgctacc accagtttgt cttcttcaga cagttcatcc atacccagga
     6661 tggcgatgat gtctttcagt tcctgataac gttgcaggat ggactgaacg ccacgcgcgg
     6721 tgtcgtagtg ttcctgacca accaccagcg ggtccagctg acggctggtg gagtccagcg
     6781 ggtcaacggc cgggtagata cccagagacg cgatctgacg gctcagtacc acggttgcgt
     6841 caaggtgcgc aaaggtggtt gccggagacg ggtcagtcaa gtcatccgca ggtacgtata
     6901 ccgcctgtac ggaggtgata gaaccagttt tggtggaggt gatacgttcc tgcagaacgc
     6961 ccatctcttc cgccagggtc ggctgataac ctaccgctga aggcatacgg cccagcagtg
     7021 cggatacttc cgtaccggcc agggtgtaac gatagatgtt gtcaacgaac agcagaacgt
     7081 cacgaccttc gtcacggaat ttctcagcca tggtcagacc ggtcagagca acgcgcagac
     7141 ggtttcccgg cggctcgttc atctggccat acaccaggga tactttgtcg ataacgttgg
     7201 agtcggtcat ttcgtggtag aagtcgttac cctcacgagt acgttcacct acgcccgcaa
     7261 acacagagta accggagtgc tcgatcgcga tgttacgaat gagctccatc atgtttacgg
     7321 ttttacctac acccgcacca ccgaacagac caactttacc gcccttagcg aacggacaca
     7381 tcaggtcgat aactttgata ccggtttcca gcagttcctg agagtttgac agctcttcgt
     7441 aggaaggtgc tgcgcggtga atcgcccaac gctcttcttc accgatctcg cctttcatgt
     7501 cgaccggttc acccagtacg ttcatgatac ggcccagagt cgctttacct accgggactt
     7561 cgatcgggtg ttcgaggtct tttacatcca gaccgcgacg cagaccgtcg gaggaaccca
     7621 ttgcgatggt acgcacgata ccgccgccga gctgctgctg aacttccagc accagacgct
     7681 cattaccatt ttgcacctca agagcatcgt acacgcgcgg tacggcatcc tgagggaatt
     7741 cgacgtcaac tacggcgccg attacctgga caatctttcc agtagccatc ttaaatcctc
     7801 tacgaaataa cctgtttaaa ccgcggcggc ccccgagacg atctcggtga gttcctgagt
     7861 aatgctggcc tgacgagctt tgttgtatac caactgcagc tctttaatca ggctgccgcc
     7921 attgtcggtc gcggctttca tcgccaccat acgggcggcc tgctcgctgg ccaggttttc
     7981 aaccacgccc tgataaacct gagattcgac ataacgacgc agcagggtat ccagcaacgc
     8041 cttcggatcg ggttcgtaca ggtaatccca ggatttatgt ttcagatcat catcatctga
     8101 tgccggtaac ggcagcagct ggctgatggt cggaacctga gacatggtgt taataaattt
     8161 gttgctgaca atgtaaagct tgtccagacg gccttcgtcg taggcctgca acatcacttt
     8221 taccggaccg atcagttcgg acagggaagg gttatccccc atgccggtga cctgggcaac
     8281 aacattgccg cccacggagt tgaagaacga cacgcctttc gagccgatca ttgcgaggtc
     8341 gcattgaacg cctttgtcgg tccaggtctt catttccgcc agcagttttt tgaacaggtt
     8401 aatgttcaaa ccaccgcaca aaccacggtc ggtcgacacc accaggtagc ccacgcgttt
     8461 aacgtcgcgg tcttccaggt aagggtgctt atattccaga ttaccatgtg caaggtgacc
     8521 aatcactttg cgcatggttt ctgcataagg acggctggcc gccatgcgat cctgcgattt
     8581 acgcattttg gaagcggcga ccatctccat cgctttagtg atcttttgcg tgttctggac
     8641 gcttgcgatc ttactacgta tctcttttgc gccggccatg agcttctcct caatgccttg
     8701 cggcctgccc taaggcaagc cgccagacgt taccaggatt gggttgcttt gaaggaatcg
     8761 aggatgcctt tcagtttgcc ttcgatttcg tcgttgtagc caccggtctg gttgatctct
     8821 tgcatcaacg gagcgtgatc acggtcgacg taagccagca gagcggcttc gaagctgcca
     8881 attttcgaca gttcaacatc cgccaggtaa ccacgttctg ctgcgaacag aaccagagac
     8941 tgctgcgcaa cggacatcgg cgcatactgt ttctgtttca gcagttcggt cactttctga
     9001 ccgtggtcaa gctgcttacg tgttgcatcg tcaaggtcgg atgcaaactg agagaacgct
     9061 gccagttcac gatactgtgc cagagcggta cggataccac cggacagttt tttcatgatc
     9121 ttggtctgtg ctgcaccacc aacacgggat acggaaatac ccgggttaac cgcaggacga
     9181 ataccggcgt tgaacaggtt ggtttccagg aagatctgac catcggtaat ggagattacg
     9241 ttggtcggaa cgaacgcaga aacgtcaccc gcctgagttt cgataatcgg cagtgcggtc
     9301 agagaaccgt ttttcccttt cacttcacct ttggtgaagg cttcaacgta ttcggcgtta
     9361 acacgtgcag cacgctccag cagacgagag tggaggtaga aaacgtcgcc cgggaatgct
     9421 tcacgtcctg gcggacgacg gagcagcagg gagatctgac ggtaagcaac agcctgttta
     9481 gacaggtcat cgtaaatgat cagcgcatct tcaccgcggt cacggaagta ttcgcccatt
     9541 gcgcaaccgg catacggtgc caggtattgc agtgcagcgg attcagacgc ggttgctacc
     9601 acaacgatgg tgttagccag tgcgccgtgc tcttccagtt tacgtaccac gttagaaatg
     9661 gtggacgctt tctggccgat agcgacatag atacatttga taccggaatc gcgctggttg
     9721 atgatggcat cgatagccag tgcggtttta cctgtctgac ggtcaccgat gatcaattca
     9781 cgctgaccac gaccgattgg gatcatggag tcaacggctt tataaccggt ctgtaccggc
     9841 tgatctacgg actgacgttc gataacgccc ggagcgattg cttctacagc agagaagccg
     9901 tcgtgatcca gcggaccttt accgtcgatt ggtgcaccca gagtgttaac cacacggccc
     9961 agcaggccac ggccaaccgg aacttccagg atacggccag tacacttaac tttcatgcct
    10021 tcggcaaggt cagcgtacgg acccataaca accgcaccta cagagtcgcg ctcgaggttc
    10081 agtgcgatag cgtaacggtt acccggcagg gagatcattt caccctgcat acaatcggcc
    10141 aggccgtgaa tgcggataac accgtcactt acagaaacaa tagtaccttc gttgtgagct
    10201 tcactcacaa cattgaactg agcaatgcgc tgcttgatca gttcgctgat ttcggtggaa
    10261 ttcagttgca tgctccagtc cccttaagac tgcaagacgt ctgcaaggcg ctcaagacga
    10321 ccgcgtacgc tgccgtcaat gaccatatca cccgctcgga tgataacgcc tgccattaca
    10381 gacttatcga ttttgcaatt cagcttaact ttgcgtgaca gacgtttttc catcgcagca
    10441 gaaattttcg cgagctgttg ttcactcagt gcggcagcgg aaatgacgtc tacctcagcg
    10501 gtagcctcac tcacggcacg aaggtgaata aactgctcca gaacatccgg gagcgcgtta
    10561 agacgaccat tttcagccat tacccgaatc aggttctgac cgttttcgtc cagttgctca
    10621 ccacaaactg cgataaacga ctcggcgagc gtttctggcg caagcgcgcc agagagaagc
    10681 tctgccattt gttcgttttt ggttacctcg gcggcaaacg ccagcatgtc ctgccagcgt
    10741 tctacacttt ggtgttcgac ggcaaagtca aaagctgctt tggcgtaggg gcgagctacc
    10801 gtaataaatt cagacatcag cccctccctc cttacagttc agcgacaagt ttatccacga
    10861 tgtcgctgtt agcagcttca tccacggaac gttcgatgat cttctcggcg ccagcaacag
    10921 ccaggatagc aacttgctta cgcagctctt cacgggcacg tttacgctcg gcttcaattt
    10981 ctgcctgcgc ctgggccacg attttagtac gttcctgttc tgcctcagct ttcgcttcgt
    11041 ccagaatctg cgagcggcgt ttgttcgcct gctcgatgat tacctgggct tccgctttcg
    11101 cttttttcag ctggtcggtc gcgctggcct ttgcaaggtc aaggtcctta tgtgctcgtt
    11161 ctgcggaagc aaggccgtca gcaatttctt tttgacgttt ttcgatggct gccattaatg
    11221 gcggccatac gtacttcatg cagaacagaa cgaacaggac aaacgcgatg gcctggccga
    11281 ggattgttgc gttaagattc acagcacaat gcctctattt agttaacgtt ctgatattgc
    11341 tctttaaata aaagcaacgc ttactacgcg acagcgaaca tcacgtacag acccagacct
    11401 acagcgatca tcgggatagc atccaccaga cccataacga taaagaactg agtacgcagc
    11461 agaggaatca gatcaggttg acgcgctgcg ccttccaaga atttaccccc gaggatgccg
    11521 ataccgatcg cagcaccgat tgccgccaga cccatcatca cagcggcagc catgtacagc
    11581 agatccatat tcaggttttc catgacagtc tccagtttgt ttcagttaaa acgtagtagt
    11641 gttggtaaat taatgttctt cagacgccat cgacagatag acgatcgtca gaaccatgaa
    11701 gatgaaggct tgcagcgtaa tgatcaggat gtggaaaatg gcccacggca cattcaggat
    11761 ccactgtgac caccacggca acagaccagc aatcagaatg aaaatcagct caccggcata
    11821 catgttaccg aacagtcgca aaccgagtga aactggtttg gacagcaggc ttaccccttc
    11881 aaggattaag ttgacaggaa tgaacgccca gtgattgaac ggctgcagcg tcaactcttt
    11941 cgtgaagccg ccgatgcctt tcattttgat gctgtagaac agaatcagga taaatacgcc
    12001 caatgccata gacagcgtta cgttcacgtc cgcagacgga accacacgca gtgcaggcag
    12061 acccagtaca tgttcagcaa tgtacggcag caggtcgata ggcagtaaat ccatcaggtt
    12121 catcaggaat acccagacga agatcgtcag ggccagcgga gcaatcagct tgcttttgcc
    12181 atggtacatg tctttcacgc taccattaac aaagccgatc accagctcaa tcgcggtctg
    12241 aaacttacct ggcacaccgc tggtcgcctt tttggctacg ctacggaata aaaccaggaa
    12301 caacagaccc agcaccaccg agaagaacat ggagtcaata ttgattgtcc agaaggtggc
    12361 tggggggttt tgtggatcca ccagcgagaa tgtacgcagg tccagctgaa ggttattcag
    12421 gtggtgtcct atgtaatcct gcggcgtcat attttctgaa gccatgatgc cttttaccct
    12481 ttgttgttaa ttacagccgg tgccagtatc tgaaccacca gcaccaaaac ccacgtaacg
    12541 atcagcggca agaataccgc ctttaaaacc gccaacgcca ccaccagtaa caccaacatc
    12601 gccagaactt tgaaagcttc gccaaatgcg aatgtccagg ccacccggcc tttcgctggt
    12661 gtatgcgcct ggtgacgcca ggcaaatatc ataaacaaaa cgttaggcag aaagactgcc
    12721 aggcccccgc ttattgcaga gacgccccag aaggggtctt tgaggctgaa cagcaatcca
    12781 cttgctatca ccaccagtaa ctgaacgagc agaagcttcc gagcaacgtt tcgactcacg
    12841 agcgacacag acatcacgtt tttcactcct gctcccttcg aggtatgccg cgtgtcgtat
    12901 aaaactttct ttaaggctta gagtcaagca tcaaaaagcg gtcaaattat acggcgcgcc
    12961 cccgtgattt caaacaataa gtagccaaaa ggtgaataaa tgtttaaata tttttccagt
    13021 gcatacaatt gcgacttttc tgctaaccct gttcgatcat gaaaaactgt aaataacgcg
    13081 taaacactgg tgataaagcg tgcttcagat cacatattgc gcatgttcgc gcacagcata
    13141 tttatttact tggcaaatga tgcctttgca agtttatgat atttcagtct aaaaacagat
    13201 actgttttaa taaatgacat ttacacaaca aaaaccaccc attgacattt ttaataatgt
    13261 tttagcagcc aatgatggtt cttagcgccg atttttagca gactgatatt ttcactaatg
    13321 acttattttc tgcttaccaa aaaaagccac gttatcttgt tgatgcaaaa gagtgaacgt
    13381 ggcgttaaat gtaaccagtt atatcagtag aaaacctggt tgttgttaac agtctaaccg
    13441 gtcaattttt tatgattttt ttgataaaaa ttaaatttta tttgctttaa tcaccaccag
    13501 atgacgttcg ccatccaggg ctggaacctg aagtttaacc actgattcga cctgatattc
    13561 ttcgggcaac aaagcgattt catcttccgg catttgccct ttcagcgcgt agaaacggcc
    13621 ttgctcacca ggaagatggt ggcaccagct caccatatcg ttcagagagg caaaagcgcg
    13681 gctaattacg ccatcaaatg gcggctctga aggaaactct tctaccctgc tctgtactgg
    13741 ttcaatattc tccagtttaa gctcatgttg cacctgacga aggaaacgca cgcgtttacc
    13801 aaggctatcc aacagagtga aatgggcttc aggacgcacg atagagagtg gaatgcctgg
    13861 cagtcctggt ccggtgccga catcgataaa ccgttcacct tgcagatacg gtgccaccac
    13921 aatgctatcg agaatatggc gtaccagcat ctcattagga tcgcggaccg aagtcaggtt
    13981 gtacgctttg ttccatttat gcagcatatt cacgtaggca ataagctggt ttttctggtg
    14041 atcggtaagc gaaatacctg cgtctttcag cagtaaggag agtttgttga gcacggtgat
    14101 tacctgttct tgatgcgttg cctggtaagc gggtgcttac caggcatttt taatgcgtta
    14161 tgcgctacga cgcagcatac cctgtttttt cagccacacc agcagaatgg agatggccgc
    14221 aggcgtgacg ccagaaatac gcgaagcttg gccgatagag gctggtttgt gatcgttaag
    14281 tttggcgatc acttcgttag aaagaccgga tacctggcgg taatccagtg tcgcgggtag
    14341 cagggtgttc tcgttacgca gctgcttttc gatctcatct tgctggcgcg cgatataacc
    14401 ttcgtattta acctgaatct caacctgttc cgccgcctgt tcgtctgtca acgcaggggc
    14461 aaacggcgtc agcgtggtta atttttcata agtcatttcc ggacgacgca gcagatcttc
    14521 accactggct tcacgggaaa gcggcgcagt caggtgagca ttcacttcgg ctgcagcttc
    14581 cgccgacggg gttacccagg tcgatttcag acgctgacgc tcacgctcga tattctcaag
    14641 tttctcgtta aagcgcgccc aacgttcgtc atccaccagg cccagttcac gaccgatttc
    14701 agtcaaacgc aaatccgcat tatcttcgcg tagcatcaga cgatattctg cgcgcgaagt
    14761 aaacatacga tacggttctt tggttcctaa agtgcacagg tcatcaacta gtacgccgag
    14821 atacgcctga gaacgtgccg gagcccaacc ttctttgtca gcagacagac gggcagcgtt
    14881 aagaccggcc agcaaacctt gcgcagcggc ttcttcgtaa ccggtagtgc cgttaatctg
    14941 accagcaaag aacagcccct ggataaactt gctctccagc gtcggtttca ggtcgcgagg
    15001 atcgaagaag tcatactcaa tggcataacc cggacgcacg atcttcgcgt tttccatccc
    15061 ctgcatagag cggacgattt gcatctgcac atcgaacggc aggctggtgg agataccgtt
    15121 cggataaatt tcattagagg tcagtccttc cggttcaagg aagatctgat gctgatttct
    15181 gtcggcgaag cgcatgactt tgtcttcgat cgacgggcag tagcgtgggc cgacaccttc
    15241 gatcacccct gcatacattg ggctacgatc gaggttactg cggatcacat catgggtttt
    15301 ctcgttggta tgagtgatat aacacggcac ctgctgggga tgctgggacg cattgcccat
    15361 aaacgagaat accggcattg ggttatcgcc atgctgttgc gccagcacac taaagtcgat
    15421 agttcgagca tcaatacgcg gtggtgtccc ggttttcaga cgaccaacgc gcagcggcag
    15481 ttcacgcaaa cggcgagaaa gcggaatgga cggcggatca ccagcacggc caccgctgta
    15541 attatccaga ccgatatgaa ttttaccgtc gaggaacgtc ccaacggtga gcacgacggc
    15601 tttggcacgg aacgtcagtc ccatttgggt aacagcaccg accactcgat cgttttcgac
    15661 aataagatct tcaaccgcct gctggaagat catcaggttc ggttggttct ccagctccgt
    15721 acgtaccgcc tgacggtaga gcacacgatc cgcctgagct cgggtagcgc gaaccgccgg
    15781 tcctttgctt gcgtttagta tcctaaactg gatacccgct tgatcgatcg ctttcgccat
    15841 cagaccgccg agtgcatcca cttcttttac cagatgtccc ttcccaatac cgccgatcgc
    15901 cgggttgcag ctcatctgcc ccagagtgtc gatattgtgt gtcaaaagca gagtctgttg
    15961 acccatacgc gccgcggcca tcgcggcctc ggtgcctgca tgacccccgc caatgatgat
    16021 gacgtcaaaa ggatccggat aaaacatggt gattgcctcg cataacgcgg tatgaaaatg
    16081 gattgaagcc cgggccgtgg attctactca actttgtcgg cttgagaaag acctgggatc
    16141 ctgggtatta aaaagaagat ctatttattt agagatctgt tctattgtga tctcttatta
    16201 ggatcgcact gccctgtgga taacaaggat ccggctttta agatcaacaa cctggaaagg
    16261 atcattaact gtgaatgatc ggtgatcctg gaccgtataa gctgggatca gaatgagggg
    16321 ttatacacaa ctcaaaaact gaacaaccgt tgttccttgg ataactaccg gttgatccaa
    16381 gcttcctgac agagttatcc acagtagatc gcacgatctg tatacttatt tgagtaaatt
    16441 aatccacgat cccagccatt cttctgccgg atcttccgga atgtcgtgat caagaatgtt
    16501 gatcttcagt gtttcgcctg tctgttttgc accggaattt ttgagttctg cctcgagttt
    16561 atcgatagcc ccacaaaagg tgtcatattc acgactacca ataccgattg cgccaaagcg
    16621 gaccgcagaa agatcgggct tctgttcctg caatgcttca tagaaaggag aaaggttgtc
    16681 cggaatatct ccggcaccgt gggtggagct gataatcagc cagatccccg aggcagataa
    16741 atcttccaac agcggaccgt gcagcgtttc ggtggtaaaa cccgcctctt ccagcttttc
    16801 agccaagtgt tctgctacat attcggcacc gccgagggtg ctgccgctga taagagtgat
    16861 atctgccata aaccgccacc tttattaaga gtggcgtatt gtacgctgtg aacgcgttgg
    16921 gatctacctg tggaaaagta tgggattaaa aaagccgatc agggcttgat agtacgcatg
    16981 atcgggtttt gcaggacgat caatgtctcg gtggactgaa tttcatcaat tgtttggatc
    17041 ttgttgataa gtacatgctg gagagcgtcg atcgaacggc acattacttt tataaagatg
    17101 ctgtagtggc ctgttgtgta ataggcttca gtgacttcat caaggctttc cagctttgcc
    17161 agcgcggaag ggtagtcttt ggcgctcttt aatataatgc cgataaagca gcctacgtca
    17221 taaccgagct gcttcgggct gacatcaata cgcgccccgg taatgatccc cgcctgcttc
    17281 attttctcta cccgaacgtg aatcgtcccc ggactgacgc caaattgttt cgccagttcg
    17341 gcgtaagcgg tgcgcgcatt gcccattaat gcttccagga ttccacggtc cagattgtcg
    17401 atcagataat tttccatagg attttcttat gcagattgat gattcattct attttagcct
    17461 tcttttttaa tgaatcaaaa gtgtgttagg ctttttattg aatgattatt gcatgtgtgt
    17521 cggtttttgt tgcttaatca taagcaacag gacgcaggag tataaaaaat gaaaaccgct
    17581 tacattgcca aacaacgcca aattagcttc gtgaaatctc acttttctcg tcaactggaa
    17641 gaatgtctgg ggctgatcga agtccaggca ccgattctta gccgtgtggg ggatggcacg
    17701 caggataact tgtcgggctg tgaaaaagcg gtgcaggtaa aagtgaaagc tctgcctgat
    17761 gcccagttcg aagtggttca ttcactggcg aagtggaaac gtcagacctt agggcaacac
    17821 gacttcagcg cgggcgaagg gctgtacacg cacatgaaag cccttcgccc cgatgaagac
    17881 cgtctttctc cgttgcactc ggtctatgta gaccagtggg actgggaacg cgtaatgggc
    17941 gacggtgagc gtcaattctc gactctgaaa agcacggtag aggcgatctg ggcgggaatt
    18001 aaagcaaccg aagctgcggt tagcgaagag tttggcctgg caccgttcct gccggatcag
    18061 atccacttcg tacacagcca ggagttactg tctcgttatc cggatctcga tgccaaaggg
    18121 cgtgagcggg cgatagcgaa agatcttggc gcggtattcc ttgtcgggat tggcggcaag
    18181 ctgagcgatg gtcatcgcca cgacgtgcgc gcaccggatt atgatgactg gagcaccccg
    18241 tcagagctgg gtcatgcggg tctgaacggc gatattctgg tgtggaaccc tgtactggaa
    18301 gatgcgtttg agctttcttc catggggatc cgcgtggatg ccgacacgct gaagcatcag
    18361 ctggcgctga ccggtgatga agatcgtctg cagctggaat ggcatcaggc gctgctgcgc
    18421 ggtgaaatgc cgcagaccat cggcggcggt atcggccagt ctcgtttgac tatgctgctg
    18481 ctgcaactgc cgcatatcgg ccaggttcag tgtggagtat ggccagctgc tgttcgcgag
    18541 agcgtccctt ctctgctgta ataatttatc gccgccagcg tctgagcagg cggcttcgca
    18601 tcccggtatc aaagcgccag atatgatcga aaatgcgcat gatgccgggt ttgccgtgtg
    18661 ccgacatcgc cacggcatga aagcgatgct gatgtacccg ctgcagctct ttcactttac
    18721 tcgtcacgtc gtcaggcaac cgctgagcga taaaatcaga aatcaccacc gcatcggcat
    18781 caaaccattc cctgctttgc aagcgttcca taatggcgcg aaaacaactg gcaagatcgg
    18841 tgccgccacg aaactgctgg cttaaaaaac ggattgcttg ttcgatgcct tgtgggcctg
    18901 aaagctcata acggacgatc tcggtggaaa atagcataat atagcagcgc cggttttctg
    18961 cgagagcaat gcgcatcaag gccaggcaga acgctttcgc acactgttca ttaaagccgc
    19021 ccattgagcc ggaagcatcc acacagacaa taaacggccc gcgcggctgt tcatcgtaat
    19081 ctttatgtac caccggacgt tcgatcactt tttcacgcca cgactcaccg tgcaggcgat
    19141 aggtgagcaa ctgtttttcc accagccgac ggtaaaactc atactccagt tccgttatcc
    19201 ctagtgtcgc cagttctggc ggcaggagac gtaaaatatc atcgctttgt tgcagaccat
    19261 caacctgctc aggaaccgtc gccggttcgc gcaccatggt gcggaaggtt tccatctgcg
    19321 catcgttgcg cggtattgat ttggcttccc gagaacgccc cagctgctct gccaggcgtt
    19381 tcagttccgg ctgttcgtta agaaattcac cgtatttcac aatcaactga tagtcgccac
    19441 gtttaagctg gccggcgctc atatcccaca gacgaccagc tgcggtattg ttatctgcga
    19501 gaatcggttc aagttgtccg ctcagcgtca tgcgttcctg aacttcactt aacagttgtt
    19561 cgcgttcttc ttctaatagc tgttgattta acgtcgttgc ttgcacgatc agacttaaac
    19621 gccagcgctg gagaaaaagc gtgtgtaacg ctgaagttat tgtgctgtta gcatcaacca
    19681 actgccgggc ttgttctgcc catggggaat tcagacgatg cagtaagtcc aggatctgtg
    19741 gtagctgcac aataaactgc ggcgtggaga ggagctggct ttgctgatag cacatcacct
    19801 cttcggtgag ttctggcggg actcgggcat ctttcagccg actgcgcagc gcctcacgcc
    19861 agcggggaac atcatcagtg attgctgcct tcagtcgtgg gaatttttca aagaagaccg
    19921 ccagctgcgg tgaggccagc agtgcgatga tcatctcttc gatcaatccc tcttcgctga
    19981 cggccagcat cacattaagc gtatccagcg ttagcattgt tgtgcctggc gaatctgtgc
    20041 accgacatcc tgtaggctgg cttcaatgcg acctaaccag tcgccaggga taaacagaca
    20101 tttttgctgt tcgctgaata aagcgtgttg cttacgccag tcgctttcaa gctcttccag
    20161 ttgttgtttt atttcacctg gcagaccttc agccgatgaa ccgggaagtg ccagcgtact
    20221 gccttgtaaa cttacatcgc gtacaacaag atgttgggtg ctatcaactt ccagattcag
    20281 tttctgggca aagccgatac cgttcagttt gccgcgaatt tcaccacctt tactcagcca
    20341 ctgttccagc gcgctacgct caaaggagat atgaaccact tccatatcat gcagttttaa
    20401 cggtttttgc agcagcagag tcagagtgga agcagtaacg ttaacaggga gttgatactg
    20461 ctgacgacgg ctaaaaatgc cgcccagacg aattaccgtt aaggctgttt tatcgctttg
    20521 ttgctgctga agttgcaggt gacgttgcac aatcgcgccc aggcgggtca acatcccttg
    20581 ctgttgccag gcgtgaccgg tcatcaatac atcaatttgt tgttgtatca aattcaggct
    20641 ttgcgcgtca taccacaggc aatctttcag caaaatgaga tctatcgggg caacagcact
    20701 gcgaccgcta aaaaaggcgc tggcctgcaa taatcggatc gcttttttcc agcgacgatc
    20761 cgagacataa ggcgcatccg gtaatttatc cagttgctgg cgcagcataa aaatcagctc
    20821 aaatacatga tcgggcagcg taatttcacc aatctctttc tgccagcgtt catattcttc
    20881 atctgtgacc tgcaaggcat caggaaccgg attgtcgttt tcatcctgtt gactggtcag
    20941 catggagcgg aaattcgctt tatcctgcac tttatctaac cacagacgaa tcagcatgcg
    21001 gtcatataac gcttccagac tgctgtctgc ttccggcagc tcgttggagg ccgccaccag
    21061 cagacgcatc gggatttttt ctacgtgtgc accgttgcgg aactggcgct cgttaatggc
    21121 ggtgagcaag gtattaagaa ttgccgggcc cgctttccag atctcatcca gaaagacaat
    21181 ttctgcttcc ggcaggtaac cgctggttaa acgttcatag cgcccttcat cttttagcgc
    21241 ctgaatagaa aggggaccaa aaacttcttc cggcgtggag aagcgggtca tcagatattc
    21301 aaacgcgcgg gcattctgaa aggcgaattt taagcgccgg gcgatcaaac ttttggcaat
    21361 acctggcggg ccaaggagga acacactttc accacttaat gccgctaata aacacaagcg
    21421 gatggcgtgg ctacgttcat aaagcccttt tccaacgaac tgctcaggcg ggaaattctt
    21481 tccgctaata aatgagggtg agccataatg aagtggcgtc ctttcgtcaa aagttctgcg
    21541 taaattgcga gtatagacgt ttcttgctgg tggctaaaat agtctcaaag
//
LOCUS       DAJVUN010000062        21152 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.062, whole genome shotgun sequence.
ACCESSION   DAJVUN010000062 DAJVUN010000000
VERSION     DAJVUN010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 21152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21152
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.062"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            40..969
                     /gene="aaeR"
                     /locus_tag="OQQ76_001918"
     CDS             40..969
                     /gene="aaeR"
                     /locus_tag="OQQ76_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AaeR"
                     /protein_id="HCS1968430.1"
                     /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDEL
                     QVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM
                     AQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA
                     MPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF
                     VTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDK
                     LPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK"
     gene            complement(1097..2542)
                     /gene="tldD"
                     /locus_tag="OQQ76_001919"
     CDS             complement(1097..2542)
                     /gene="tldD"
                     /locus_tag="OQQ76_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HCS1968431.1"
                     /translation="MTLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY
                     HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD
                     SGDGKVQTLGAVGHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS
                     GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGAGGGGGRFGYEFFLADLD
                     GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR
                     GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ
                     DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG
                     GGQVDITSGKFVFSTSEAYLIENGKVTKPVRGATLIGSGIETMQQISMVGNDLKLDNG
                     VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA"
     gene            complement(2698..6498)
                     /gene="yhdP"
                     /locus_tag="OQQ76_001920"
     CDS             complement(2698..6498)
                     /gene="yhdP"
                     /locus_tag="OQQ76_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709041.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA2 domain-containing protein YhdP"
                     /protein_id="HCS1968432.1"
                     /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKI
                     ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR
                     WQFRDLTFWQLRFRTNTPITSGGGNDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG
                     QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ
                     ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT
                     HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS
                     DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR
                     FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD
                     GQATISWLNNDKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS
                     QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR
                     NAKFAFQPDWPALTNLDIELDFINDGLWMKTDDVNLGGVRASNLTAVIPDYSKEKLLI
                     DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV
                     TLRNNSLFIKPLDSTLKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ
                     VAVNLNGNWLPAKTGVLPAAVNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNV
                     SSHLPSPLAKPAGEPLPVNVKVDGNLSSFELTGQAGADNHFNSRWLLGQKLTLDRAIW
                     AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS
                     LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR
                     GDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDLTISGDTLTLTNGLI
                     DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLH
                     WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF
                     GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEVVVAPEIS
                     ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK
                     EKAQ"
     gene            complement(6566..8035)
                     /gene="rng"
                     /locus_tag="OQQ76_001921"
     CDS             complement(6566..8035)
                     /gene="rng"
                     /locus_tag="OQQ76_001921"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HCS1968433.1"
                     /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG
                     RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD
                     LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE
                     YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR
                     VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI
                     QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR
                     TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE
                     ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM"
     gene            complement(8025..8618)
                     /gene="yhdE"
                     /locus_tag="OQQ76_001922"
     CDS             complement(8025..8618)
                     /gene="yhdE"
                     /locus_tag="OQQ76_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase YhdE"
                     /protein_id="HCS1968434.1"
                     /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY
                     VVRLAREKAQAGVAQTAQDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ
                     VMTAVVLADSQHILDCLVVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFV
                     RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG"
     gene            complement(8627..9115)
                     /gene="mreD"
                     /locus_tag="OQQ76_001923"
     CDS             complement(8627..9115)
                     /gene="mreD"
                     /locus_tag="OQQ76_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HCS1968435.1"
                     /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL
                     YWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ
                     QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA
                     VQ"
     gene            complement(9115..10200)
                     /gene="mreC"
                     /locus_tag="OQQ76_001924"
     CDS             complement(9115..10200)
                     /gene="mreC"
                     /locus_tag="OQQ76_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HCS1968436.1"
                     /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT
                     AVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA
                     RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ
                     VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD
                     VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG
                     ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPATGIAQPTPQQPTTGNAATA
                     PAANRSPQRATPPQSGAQPPARAPGGQ"
     gene            complement(10266..11309)
                     /gene="mreB"
                     /locus_tag="OQQ76_001925"
     CDS             complement(10266..11309)
                     /gene="mreB"
                     /locus_tag="OQQ76_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000913396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="HCS1968437.1"
                     /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD
                     RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNS
                     FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG
                     SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI
                     KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     gene            complement(11614..13554)
                     /gene="csrD"
                     /locus_tag="OQQ76_001926"
     CDS             complement(11614..13554)
                     /gene="csrD"
                     /locus_tag="OQQ76_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E specificity factor CsrD"
                     /protein_id="HCS1968438.1"
                     /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA
                     VATAIDTHLVSNDFSTLRPQITELMMSADIVRVGLLHGDKQVYTLARNGSYRPVGSSD
                     LFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAISFIIVMLFLAVRWLQR
                     QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT
                     LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS
                     QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDT
                     LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK
                     GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM
                     VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS
                     QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL
                     KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQG
                     DFFASSQPLDTNVKKYSQRYSV"
     gene            13706..14680
                     /locus_tag="OQQ76_001927"
     CDS             13706..14680
                     /locus_tag="OQQ76_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1968439.1"
                     /translation="MQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDA
                     LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA
                     RVKGDWLVAMPQGLDARKAIIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
                     STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRILPRDEFAESRPLEKQVWAGAIDT
                     VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA
                     QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN"
     gene            15658..16128
                     /gene="accB"
                     /locus_tag="OQQ76_001928"
                     /gene_synonym="fabE"
     CDS             15658..16128
                     /gene="accB"
                     /locus_tag="OQQ76_001928"
                     /gene_synonym="fabE"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HCS1968440.1"
                     /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM
                     QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF
                     IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE"
     gene            16139..17488
                     /gene="accC"
                     /locus_tag="OQQ76_001929"
     CDS             16139..17488
                     /gene="accC"
                     /locus_tag="OQQ76_001929"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HCS1968441.1"
                     /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL
                     ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF
                     IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA
                     SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG
                     QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE
                     FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA
                     VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG
                     ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK"
     gene            complement(17580..18627)
                     /locus_tag="OQQ76_001930"
                     /pseudo
     CDS             complement(17580..18627)
                     /locus_tag="OQQ76_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000787050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
     gene            complement(18624..19586)
                     /locus_tag="OQQ76_001931"
     CDS             complement(18624..19586)
                     /locus_tag="OQQ76_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1968442.1"
                     /translation="MSKVFTIGEILVEIMASKIGQPFDQPGIWNGPYPSGAPAIFIDQ
                     VTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDR
                     DFIFNIKNAACGKLSAQHVDENILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVKANGG
                     VISFDPNIRKEMLDIPEMRDALHFVLELTDIYMPSEGEVLLLSPHSTPERAIAGFLEE
                     GVKEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFDVHR
                     ALQYANACGALAVTRRGPMEGTSRLAEIEAFIQRHDMSIREAAQ"
     gene            complement(19608..20597)
                     /locus_tag="OQQ76_001932"
                     /pseudo
     CDS             complement(19608..20597)
                     /locus_tag="OQQ76_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525780.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(20598..>21152)
                     /locus_tag="OQQ76_001933"
     CDS             complement(20598..>21152)
                     /locus_tag="OQQ76_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HCS1968443.1"
                     /translation="DGKEVRITNPKQAIDHGIAFVTENRKEEGLVLMHDVNMNTHHVA
                     FQYNASRMGLINHRQEEAKTLQSIARMNTKVSSVHQAVGALSGGNQQKIVLSKWLEKT
                     PRILLLDEPTRGVDVGAKFEIYNVIRQLAAAGTAIILVSSELPEVMALSDRLVVMRNK
                     TIADIYSCENLTQTQVMTAATGVR"
BASE COUNT         5204 a         5775 c         5122 g         5051 t
ORIGIN      
        1 tattatgtga tctaaatcac ttttaagtca gagtgaataa tggaacgact aaaacgcatg
       61 tcggtgtttg ccaaagtagt tgaatttggc tcttttaccg ccgccgccag acagctacag
      121 atgagcgttt cgtccatcag tcagacggtg tcaaaactgg aagatgagtt gcaggtaaag
      181 ctgttaaacc gtagcacacg cagcattggc ctgaccgaag ccggtagaat ttactaccag
      241 ggctgccgtc gtatgcttca tgaagtgcag gatgttcatg agcaactgta tgccttcaat
      301 aacaccccca tcgggacgct acgcattggc tgttcttcaa ctatggcaca aaatgttctc
      361 gccgggctga cagccaaaat gctgaaagaa tacccaggtt tgagcgtcaa tctggttacc
      421 ggaattccag cccccgacct gattgccgac ggtctggatg tggtgatccg cgtcggcgcg
      481 ttgcaggatt ccagcctgtt ttcccgccgt cttggcgcga tgccaatggt ggtgtgcgcc
      541 gcgaaaagct atctcacaca atacggcata ccggaaaaac ccgccgattt aagtagccat
      601 tcatggcttg aatacagcgt gcggcccgac aatgaatttg aactgattgc accggaaggg
      661 atctcgactc gcctgatccc gcaagggaga tttgtgacta atgatccgat gacgctggtg
      721 cgctggctaa cggcgggtgc cgggatcgcc tacgtgccgc tgatgtgggt gatcaacgag
      781 atcaatcgtg gggagctgga gatcctgctg ccgcgttatc agtcagatcc acgcccggtt
      841 tatgcgttat ataccgaaaa agataagctg ccgctgaagg tacaggtcgt gatcaactcg
      901 ctgacggatt attttgttga ggtcggtaaa ttgtttcagg agatgcacgg gcgcgggaaa
      961 gagaagtaat tcatattgta ctgttacgtt ctacaaacct gtgccaacgg gttcccctca
     1021 ccctaacccc agaggagcga ggggaccgtt cgtgcatgta gaaagattaa ttatccttct
     1081 gaaaataatg aaattattac gcagtaccgc caacagtcag gttatcaact ttcagcgttg
     1141 gctggcccac gccaaccggc aaactttgcc cttctttacc gcagacacct acgccgttat
     1201 ccagtttcag gtcgttgcca accatcgaaa tctgctgcat ggtttcgata ccggaaccaa
     1261 tcaacgttgc gcctctcacc ggcttcgtta ctttaccgtt ttcaatcaga tatgcttctg
     1321 aagtggagaa aacgaatttg ccggaggtga tatccacctg accgccacca aagttcggtg
     1381 catagatacc gtactcaacg gattcaataa tttcctgcgg ggtcgattta cccggcagca
     1441 tataggtgtt ggtcatacgc ggcatgggca gatgggcgta ggattcacgg cgaccgttgc
     1501 cagtcggcgt catccccatc aaacgcgcgt tgagtttatc ctgcatgtag cctttcagaa
     1561 tgccgttctc aatcagcacg ttgtactggc ctggcgtacc ttcgtcatca atcgccaccg
     1621 aaccacggcg atcgaccatc gtgccgtcat caaccacggt acacagttct gaagccacca
     1681 gctccccgac ctgcccacta aatactgaag tgccgcggcg gttgaagtcg ccttccagac
     1741 cgtgacctac cgcttcatgc aacagcacgc ccggccaacc tgcgccaagt actaccggca
     1801 tggtgcccgc tggtgcagca acggcagaaa gattgaccag cgccatacgc actgcttctt
     1861 ttgcccatgc atccgcacgg acttcgccgt caagatcggc aaggaagaac tcataaccaa
     1921 aacgaccgcc accgccaccg gcaccgcgtt cgcgtttgcc atcttcttcg accagaacgc
     1981 tcacggaaag acgcaccagc ggacggacat ccgccgctag cgtgccgtcg gtggccgcaa
     2041 ccagaattaa ttcatagaca ccactgaggc tggcagtcac ttcctgtacg cgcttgtccg
     2101 cttcgcgagc aaccttatcg acgcgacgca ggatatccag cttctcttca cggctcatgc
     2161 tttgcagcgg atctaccgag gtatacaacg ggctatgccc taccgcgccc agcgtctgta
     2221 ctttgccatc accactatca cggacgatgg tgcgcgccgc ttgcgcactc tgttccagcg
     2281 ccagcaggct gatttggtca gcgtaagcaa atccggtttt ttcaccgctg attgcacgca
     2341 cgccaacgcc ctgatcgatg ttgtaagaac catctttaat aatgcggtct tctaaaaccc
     2401 aggattcgtg atagctcgac tgaaaataga gatcgccata atcaaggcga cgttcggcca
     2461 gttgaccgag gatcgcgaac aagtcctgat gtttcaggcc gttcgccgct agcaattgtt
     2521 cacttaccag gttaagagtc atcgtttttg ctactcgtta gttactgcag tagaggattt
     2581 tttacggctg ccggatgcgg cgtgaacgcc ctatccgacc tacggttatg ttctggctcg
     2641 ttggcctttg gcaacgatta tcatatgaga ttggggcaat tacgcgccct cgtcaaatca
     2701 ttgcgctttt tctttacgcg gttggcgcaa cacttcgttg atttgcggat cgtccagcgg
     2761 acccgaaatg tgatagcgca aaatggagac tttgctccac agcggcccca gcactttact
     2821 ggctgcaaat actgccgcgc caacaatggg gttaaccgca aaagccgcag ccacgcccac
     2881 cgtcgcagaa atctctggtg cgacaaccac ttccatattc aggtcgcgac gtaccagatt
     2941 taccgaccct ttcatggcga tatccgcctc caggccatcc accagcgtgt cgtcggtgtg
     3001 cataacgccg tctttaatcc acgcggtgct gcgaatggag tcaaaataga acccttcgcc
     3061 aaaagtgtct ctgaaatcaa aacgcagctt acgcatcagg gcatcaacgc tcaataagcg
     3121 cagcaattgc ccggcatgtc cggtattgat ttcggtaatt tcgcctttac ccagttgagt
     3181 atgaatgatg ccattcaacg tcgcctcatc tggttgccag ggtgctttgc gccagtgtaa
     3241 atcgtaatcc acattaaatg acgactggcg tatgggcgtc gtgacaccaa aaaattctgc
     3301 ggcggcatca attttctgcc cgcgcagttt tcctttcagc gaggtacgtt cattccccgg
     3361 attattaacc cattcaccat cggcagtaag ccgcgagaaa ccagtatcaa tcagtccatt
     3421 ggtcagcgtt aacgtatcgc cagaaatggt gagatcactg tcaatacgac cgaatttttg
     3481 cccccagaac cagcactctg tgcatcgtat ttgtgcgtcc ggccagccac ggaagttaat
     3541 gcgctccgtt gtcgggaaag gtgatgacgg tgttgaatca ccacgagttt tcgccacgct
     3601 cgggttgtaa taaagatatt tgatattcgc cagccacggc gcgttattac gcatcgccag
     3661 cgtggcattg atttcacgcc cctgcgcctc aaccagggtg ccatttgccg tcggttgcga
     3721 aacaatactc aggttattcc attgctgatt tcccagtgac aacataggcg tacgtaacgt
     3781 tatgtgttgt gggaaactcg ctgcaccacc gacactctcc gcagcgcctt tctggaacag
     3841 ggccagccac tcggcaccat tcatcggcgg catattgagt tcaacgccac tttgttccgg
     3901 caacggcggg agcgttttac tgtctgccgc ccaaatagca cgatcgagcg tcagcttttg
     3961 accaagcaac cagcggctat tgaaatggtt atccgcacca gcctgtccgg ttaattcaaa
     4021 gctgctgaga ttgccatcaa ccttaacgtt taccggcagt ggttcacccg caggtttggc
     4081 taacggtgaa ggtaagtgac tgctcacatt attcagatcg ccgttcagct ctacgttata
     4141 ggtcgcgcca gcatgataag gcagatcaat gcccacttta ccatcccacg ccacgctgcc
     4201 actcaatgct tcgttcaccg ctgcaggcag aacgccggtt ttcgccggta gccagttacc
     4261 gttgaggttt accgcaacct ggtaggcttt tgccccttct ttggtggaaa aatccacgtt
     4321 caacggctga ttaaaccagc ttgctgtcag tggttcactt tgcagatcgc cattgataaa
     4381 gctgaattta ccgctcaaat ttttcagggt gctgtcgagt ggtttgataa acagactgtt
     4441 attacgcagc gtcacttcac ctttcgcggt taccagttcg ccgttcagcg ggatatcaag
     4501 atgtaagcga gcattcacat cgccgtcgag ctggagttct tgcagggtcg cacccagaga
     4561 atctttcagc ggtgtctcat caaagtaagg gccaacggct ttacccggac ctttaatgtc
     4621 agcgtcaatc agcagttttt ctttcgagta gtcagggatc actgcggtga gattactcgc
     4681 gcgcacgccg cccagattaa cgtcatcggt tttcatccat aaaccgtcgt taataaagtc
     4741 cagttcaata tcaaggttag ttaatgcagg ccagtccggc tggaaggcaa acttcgcgtt
     4801 acgcagcggc accagcactt caaactgacc ttcgttgtgt ttatagggga agagttgcgg
     4861 attgccacca taaaccagcg tcgcgttatc cgcttcaccg ccctgaatcg cgccacttaa
     4921 gtaatcaact aggtctttac ccatcaagtt ttccgggaaa tagcgccagg cttgtgaacc
     4981 atcatcggta ctgatgccag ccagaatacc cagccagggt tcatcgttag caggttgcag
     5041 gtaacgaaaa ccgccgcgcg catggacggc tttggcttta acgtcaatat tacgcccatc
     5101 cagctggaaa cctttgtcat tgttcagcca gcttatagtt gcctggccgt cggcgatttc
     5161 cagtggcgca cggaataccg tttcgtaagg catctttgcc tgcttcatcg acgcggtaag
     5221 caaaccattt tcaacgctgc cggaaagcgt cccggagaag tgttccgcac ccggtaataa
     5281 tttccattgc ttccaggcca gatcgctcca cgatgcctga aaacgggtct tgtctgccgc
     5341 ctgaagcggg atatccagcg ccagagtgtt aatcttgccg ctcggttgtg tggagcgcca
     5401 aacatcaccc agtgcaggtg aaagtttcgc ggccagcggg cgtatgccct ccaggcctgc
     5461 cagctccaga ttactggcgc gaatccggag ttcgtcactg cgtttattgt ctttgccgcc
     5521 aacgtcctgt tccggtatcc aggccagcgt caatgctccg ctcggccagg gtttgccgtc
     5581 catcgtgatc cgtgtatcgg gaatagagaa ctgccagccc ggattttcac gcgtaatatg
     5641 cgcggtcaga ttatccaccg acagcgtatg cgtttgcttc tcgcccaacc agctggcacc
     5701 gccctgtttc agccagacgt caccgccggt tacatcgcct ttgtcgatcg tcatccagcc
     5761 ttcaagggag aactgtgccg tttccagagc aatattgtcc tgcatccatt taccgagcca
     5821 cggcttcagg tcgatgtcat ccgcctgtag ccagacgcga ccattgctta acaacccctc
     5881 atcatcgcgc aaatccatgc gcacctgcat cacgccgtgc tgtccggtaa ggctggagag
     5941 gcttaccaag ccttccgcac ggtgtcgacg tggatcgttc agccaggtga gttgtgggat
     6001 cgccagctcg gcgcgctgac cggatggcgt cagaaaactg acttcactgt cgcggagatc
     6061 gaaatggtca aattgacgaa gaaacagatc gctgatgtga ctggcttcca ggctatcatt
     6121 accaccaccg ctggtgatag gagtgttggt gcgaaagcgc agctgccaga aagtgaggtc
     6181 gcgaaactgc cagcgcatat gtaacaagct ctgccagaca tccagcgcca gagtaacgcg
     6241 tttaaccgaa aattcgccgc catcttttag ttctgcacgg atgtcgtgtg cttcaagcgt
     6301 cgggccaaaa ttctgccagc tggctgagag ctgactggct tctaccggca tgccagtcgc
     6361 ggattctatt ttgttgagga tttctggacg ccaggcgtca agatgcggta aagcaatacg
     6421 caggccgcta accagcaggg ctgcgatcac aacgagcgcg gctccagtaa gcagtaaaat
     6481 ccccggcaat cgcctcaccc gtcactcctt gtctgctaaa aatgtgactc aaaaaccctt
     6541 tgccggatgg cggcccagca tctgtttaca tcattacgac gtcaaactgc tcctggttat
     6601 agagcggttc aatttgtact ttaacctgtt tgccaacgaa aatttccact tccgccagcg
     6661 agtgtgactc ttcgcctttc aaggcttcag ctactgccgg agaagcatag accaggaaac
     6721 ggtcggagtc gtaagcatgg tggacacgaa caatctcgcg catgatttca tagcataccg
     6781 tttccacggt tttcaccgtt ccgcgaccgt ggcaggttgg gcattcgtta cacagtacgt
     6841 gctcaatgct ttcgcgggtg cgtttacgcg tcatctccac cagccccagc gccgaaaaac
     6901 cattaacgct ggttttcacc cggtctttgc tcaacgcctg ctccagcgag tgcagcacgc
     6961 ggcggcggtg atcttcatta ttcatatcga tgaaatcaat aatgataatc ccacccagat
     7021 tacgcaaccg taactggcga gcgatagcct gcgtcgcttc aatattggta ttgaaaatgg
     7081 tgtcgtccag attgcgatga ccgacaaacg ctccggtatt gatgtccacg gtggtcatcg
     7141 cttcggtctg gtcgataatc agataaccac cggatttcag ttctactttg cgttccagcg
     7201 ctcgctggat ttcgttttcg acatcaaaga gatcgaaaat cggctggcgt ccggtgtaat
     7261 gctccagctt gctggtcatc tcgggaatgt actccgaggt aaactccagc aatgcttcgt
     7321 aagtcaggcg tgagtcaacg cgaatgcggt ccagttcggc gtcggcgaaa tcacgcagaa
     7381 cacgctgcgc cagcgccagt tcgccgtaca gctgataacg ggtctgcggg cgttttttac
     7441 gctccataac tttggtccag acgcgtttca gataagcggc atcggaggcc agttcagcct
     7501 cgccaacccc ttccgctgcg gtacggatga taaacccgcc ctgctcgtcg caatactctg
     7561 cgaccacttt tttcaggcgt tcacgttctg attcgctttc aatacgttgg gaaaccccaa
     7621 cgtgagaagc ccctggcata aacaccagat agcgagaagg cagcgtgata tcggtggtca
     7681 ggcgcgcacc tttagtgcca agcggatctt tcaccacctg caccatcaga tcttgcccct
     7741 gacgaaccag ttccgagatg tcgcgcaccg tgaattgctt ttgttcttca cccgccacac
     7801 attcggtgtg cggcatgata tcggatgcat gaagaaacgc ggctttatcc agcccaatat
     7861 ctacaaaagc cgcctgcata cccggaagta cacgacttac acgacccttg tagatattgc
     7921 ctactattcc gcgtcgcgcc tcacgttcaa tatgaatttc ctgcagaata ccgccatcaa
     7981 tatacgccac tcgcgtttcc gaaggcgtta cgtttactaa caattcagcc gtcatgttta
     8041 tcccttttct cacgcagtgc gttaaaatta cttaataatt catacgtttc aaccagcggt
     8101 aagccgacta cggcgtgata gctgccattt atcttcctga caaaacagcc acccagcccc
     8161 tgaataccgt atgcacctgc tttatctaac ggttcaccgc tggcgacata gcccgcgatg
     8221 tcttcgtctg ttaacgttct gaaagtcaca tcggtgacca ccaggcaatc gagaatgtgc
     8281 tggctgtcgg ccaacaccac tgccgtcatc acctgatggg tctgacccga taatttgcgc
     8341 aacatctgcg ccgcatgctc tgcgtcgcgc ggtttctcca gcacttctcc attcaggata
     8401 acgatagtat ccgcacccag caccgggaga tcctgcgccg tttgcgcgac acccgcctgt
     8461 gctttctcgc gtgccagacg cacaacatac tgctgcgcgc tctcctgcgg ctgacgctgc
     8521 tcctcaatgc ccgtaacaat acgttcaaag gtcacgccaa gttgcgcaag taactcctga
     8581 cgacgcggag aaccggaagc taaatacaga gaagtcatag aaacctttat tgcactgcaa
     8641 actgctgacg gactttacgc atcagcaaga aaatccacgg ccagagcacc ccattgacta
     8701 cactactcca gaacacttcc ggtctgaaag agacgttaat cactaaaaac tctgcccaga
     8761 aaacaataat atccaccacc agcgaaagca acatgacgac tagcgcctgc tgccataatg
     8821 cgaggttgcg gaaaagctgg tatttcagcg ccaccaggta agcaatgatg ctcatcgcca
     8881 atacgcgtac gccaagcgtc gagccgctga tcagatccag tatggcaccc atcacaaaac
     8941 ctgtgcccac atttacgcga tggggcaagg ccaggatcca atacaacaag ataagtaaca
     9001 cccagtttgg ccggaaaaca atcaggttat ccggccaggg catgatttgc agcaacagcg
     9061 caatgaggaa agagagccag attacccaac gtccctggct acgatagctc gccactattg
     9121 ccctcccggc gcacgcgcag gcggttgagc accactttgc ggcggcgtag ccctttgtgg
     9181 agagcgatta gcagcaggcg cagtagctgc atttcctgtc gtcggttgct gcggagtcgg
     9241 ctgagcgatc cccgttgccg gttcaggtaa ctttggcccc atcgcgtctg gcgaaggcaa
     9301 tacctgcggc atcatctgca tcagacgttc attagcaaca cgatgcacct cttccggcgt
     9361 catcgggtta gcgccgttac gatccgcgcc ccacagcagc agcagataac gcaaacgttg
     9421 cagtcctgca gtcggacgcg cctgaatcac agtataagcg cgctgggtat cgagttttac
     9481 ggaagagaca accgcgaccg gatagccttc cgggaaacga ccgcccagac cggaggtcac
     9541 cagcacatca ccaacacgaa tatccgtatt cgctggcaga tgctcaagct gcaaatcatc
     9601 cgtacaaccg ttaccggctg caattacgcg gatatcgttg cgcagcacct ggattggcag
     9661 cgcgtgggtc gcatcacaaa tcagcagcac gcgactggtc agtttagcga cggccaccac
     9721 ctgaccaaca acacctttgt cgctgatgac cggctggcct tcataaacgc cattaacgct
     9781 acctttatcg ataacaactt gatcgctata aggatcgtta accgtggaga taacctgagt
     9841 caccattttc tgctcatcct gacgcagcgg ggaacccagc agctcgcgca gacgcgcgtt
     9901 ctcctgtttg tattgtccaa gcatcagcag ttcactgttt ttcagcaaca gttcctgacg
     9961 taacgcccgg ttttcaagtt ctagttggtc acgcgaggcc agcgtctgcg atacgccatc
    10021 cagcaattca cgaggagcat tggaaacaaa gtagaaagga ctgacggcgg tatccatata
    10081 agtacggatt tgactgaacg tccccaggcg gctgtcggca ataataatgc cgagcgccac
    10141 cagcaccgcc agaataaggc gaatctgtag cgacgggcca cggctaaaaa ttggcttcat
    10201 aagttatgcg tattctcgta tcagaccagg cagggtaaac agacatttcc cctgcctgca
    10261 tccgattact cttcgctgaa caggtcgccg ccgtgcatgt cgatcatttc cagcgctttg
    10321 ccgccaccgc gcgccacaca ggtcagcggg tcttcagcaa caacgactgg aatgccggtt
    10381 tcttccatta acaaacggtc aaggttacgc agcagtgcgc caccaccggt gagcaccatg
    10441 ccgcgctcgg agatgtcgga agccagttcc ggcgggcact gttccagtgc aaccattacc
    10501 gcgctcacaa taccggtcag cggttcctgc agtgcttcga ggatttcgtt ggagttcagg
    10561 gtaaaaccgc gtggaacacc ttctgccagg ttacggccac gaacttcgat ttcacggact
    10621 tcatcgcccg ggtaagccga accgatttcg tgcttgatac gttctgcagt ggcttcaccg
    10681 atcagagaac cgtaattacg acgcacatag ttgatgatag cttcgtcgaa acgatcacca
    10741 ccaatgcgca cggaagagga gtaaaccacg ccgttcaagg agataacagc aacttcagtg
    10801 gtaccaccac cgatatcaac caccatagaa ccggtcgctt cagaaaccgg caggccagca
    10861 ccaattgcgg cagccatcgg ttcttcaatc aggaagactt cacgggcacc agcgccctgc
    10921 gcggattcac gaattgcgcg gcgttcaacc tgggtcgcgc caaccggtac acaaaccaga
    10981 acgcgcgggc ttggacgcat aaagctgttg ctgtgcactt gtttgatgaa gtgctggagc
    11041 attttttcag tcacgaagaa gtcggcgata acgccgtctt tcattgggcg aatggcagca
    11101 atattgcccg gcgtacggcc cagcatctgc ttcgcgtcat gacctactgc agctacgctt
    11161 ttcggtgaac cggcacgatc ctgacgaatg gccaccacgg aaggctcatt caatacgatg
    11221 ccttgtcctt ttacataaat gagggtattc gcagtaccca ggtcaatgga caagtcattg
    11281 gaaaacatgc cacgaaattt tttcaacata ctaagggata atcctgaaag ctggggcgga
    11341 aaagaaaatc cgcttacttt accaaccaca cgcagcagcg acaaggcgca aaaatcatct
    11401 gctacggtga aaattagtgc agttcgtttc ctttgttaca aatctctgcc tgagtccaga
    11461 aaggcttaat gcatcagcag cattcctcgc ctgtttgcaa ccgcgtaagg tcattcatct
    11521 gcatatgtgc tgcaacaatc tggcgagcag acaagcacac tcccatgaga cgcagcgcgc
    11581 gttattctac gtgaaaacgg attaaacggc aggttaaacc gagtatcttt gtgaatattt
    11641 tttcacgtta gtatcaagtg gctgtgagga cgcgaaaaaa tccccttgcc cgcctgtaac
    11701 accgcgctga atcagggtct gccactcgct tcgcgaacgc acaccggtgg cgtaaacctg
    11761 ggtgctggtc ccggagcagg cttccaccag gctttgaacc agcagctggt tctccgttcg
    11821 cttctcaatg tttctgacca gccccggatg gagcttgagt aactcaacat taagttcttt
    11881 gatccaactg gtgcttacca gcgtcaaacc agcctggttg acggctaccc gtacccctaa
    11941 agcattcact aaacgaataa caggttgtaa acgactgata tgttgaccta catcggcctc
    12001 tgcaagttca ataattatgc gttttcgttg tgatttttca cattgcatta acgtatcgcg
    12061 cagccaacgc tgaaaacgcg ggcgaatcag cgactcaacg gtaacctgaa tcgccagatt
    12121 ttcctctggc cagtaccgca atagtggaat aagacggctg atttgcagac ggtcatactc
    12181 ttccgataag ccaaactgca agaccatcgg catatactcc gccgagctaa cctcttcatt
    12241 accatcgaag atgcggcaca tgagttcgcg atgatgaacc tgaccttcgc gagtaaccgc
    12301 cggtttttga taaaggcgcg ggccgccgcg actgagcatt tgctcgataa gcgtacgcca
    12361 gcgaacatta ccgcgtcctt tttcaggcaa cgagtcatcg taaatagccc agctattgcc
    12421 gccctgcaat cccgcattac gcgtggcaga ctctgcatgt tccattacct gctcggtatc
    12481 ctgaccacta cgccaggcgc agataccaat atggatcata tcgtcgcgat cgagcatttt
    12541 attgttcggc aaggtatcga cggctttaat taactgaccg gcgatgctct ctgcctcttt
    12601 taacgtccgg tgcggtaaca gcgcagcaaa atcactgcgg tggtaacgcg ccagcagtgc
    12661 gccagggtag cgcatcataa atgtcgacag cagattcgtc agagtgaaga actgttcttc
    12721 aacctggctg tgcccccaag tatcgctcaa catattgaaa tccggcagac gaatcatcat
    12781 cacgatcccg tgggtaccta ctttctcctg atcttccagt aacgttgcta actgattatc
    12841 gaaaaagagt cggttattga ggccggtttt cacgtcctgg gcggcataag agcggatcag
    12901 cgtatcaaga cggctgtgtt gttcgcgtgc gttctgaatt tcacgaagca gcgtatccag
    12961 cgcactgctg gttctgggcg gccattcata gatggttccc aacacattag agccacgctc
    13021 accgtttaag atacgagtag cccgggtttc cagcaattct tgcccggcaa gttgccgttg
    13081 taaccagcgt accgccaaga agagcataac aatgataaag ctaatcgccc ccgtgagcgg
    13141 cgcggtggtc atcaacgaat ggaaatagtt gcccatcgga tcctgataaa ccagacgcag
    13201 cgacatcccc ggatgcttta tcaacggaac gctcagttca cgaaacagat cgctggagcc
    13261 aaccggacga taactaccat ttctggccag ggtataaacc tgtttatcac catggagcag
    13321 gcctacacga acgatatctg ccgacatcat taattcggta atttgtggcc ttaatgtgct
    13381 gaagtcattc gacacaaggt gggtatcaat cgccgtcgcc accgcctgaa cgcgatgact
    13441 aaacttatac tgaattgcgt tgtagaaact tagcgaacag cccagcaaag tcacaaaaat
    13501 tgttaacccg gtgagcagcg taacaaaggc cgaaaatttc gtcgttaatc tcatccttgt
    13561 gttaactccg atagtgagga agcgggcata ctagcaaatc agatttatct cgcaatttat
    13621 tgcgcttcat cggctttgct tttccattag cgagtataat cttcagaaat tattttccaa
    13681 tccatcatgc acatgaggac cacttatgca ggcgttactt ttagaacagc aggacggcaa
    13741 aactctcgca tcagtacaga ctctggacga aagtcgcctg ccggagggcg atgtcacggt
    13801 cgatgttcac tggtcgagcc tgaactataa agatgcgctg gcgattaccg gtaagggaaa
    13861 aatcatccgt aattttccga tgattcctgg gatcgatttt gccggaactg tacgcaccag
    13921 cgaagatccg cgttttcatg ccggtcagga ggtgttactc actggctggg gcgttggtga
    13981 aaaccactgg ggtgggctgg cggagcaggc gcgagtgaaa ggtgactggc tggttgccat
    14041 gccgcaaggg ctggacgcgc gtaaagcaat aattatcggt actgccggtt ttaccgccat
    14101 gctgtgtgtg atggcgctgg aagatgccgg tgttcgcccg caggacgggg agattgtcgt
    14161 gacgggtgcc agtggtggcg tcggcagtac cgccgtggcg ctgctgcata agttgggtta
    14221 tcaggtcgtt gccgtttccg gtcgcgaaag tacccatgaa tatctgaaaa gtttaggtgc
    14281 cagccgtatt ctccctcgtg atgagtttgc cgaatcccgt cctctggaaa aacaagtctg
    14341 ggctggggca attgacactg ttggcgacaa agtgctggca aaagtgctgg cgcaaatgaa
    14401 ttacggcggc tgcgtggcgg cctgtggtct ggcgggtggt tttactctgc caaccacggt
    14461 catgccattt attctgcgta atgtccgttt gcaaggggtg gattcagtaa tgacgccacc
    14521 agaacgccgc gcacaagcct ggcagcgact ggtcgccgat ttaccggaat cattctatac
    14581 ccaggcggca aaagagatat ctctgtcaga ggcaccgaac tttgccgagg ccatcattaa
    14641 taaccagatc cagggtcgca cgctggtgaa ggttaactaa ccatttagca aggaataata
    14701 agagagggaa ctcattttga catcattatt caatcggtta acgggaaaag cggttagccg
    14761 gacagctttc gtcgaacacc ttggtcagga agttgtacaa catcatccaa actggaaagt
    14821 catgatttcg actgaccaca aattgatgcg cattgatact cctctaaaca gccattattg
    14881 atacgcctcc gtcgcctgtt aggtttatgg tgctttgcct gggcgacact acgcttaacc
    14941 tgttactgat ttctggtacc atggggtgaa taatctgatt ttgtttgact gcaaattaac
    15001 cactcgaacc tatttaatgc tgagaattgt cagtcggttg attttgcgtg ctttagcatt
    15061 cacatctatc cagacgatgc agtgaaaatt gggtaatccc cagcaaccgc tgcgtaatgt
    15121 cgtctatctt gtcgcgatcc tggcatccct acattatttg tggtctgtga agattatctc
    15181 attgcagccc ctcatcttcg cagggctggc tttacagctt ttcaccttac gttataagaa
    15241 gttccgtcga tgatggcgct aatttcgtga attgtgcggc ttgttgcaaa ttacacggtg
    15301 ttgaaggtta tttacatgtt agctgttgat tatcttccct gataagacca gtatttagct
    15361 gccaattgct acgaaatcgt tataatgtgc gacctcgtcc tccctgacgc agtttttgcg
    15421 ctgcggaaaa ggtgacattg gcgcaacgaa ggtatatttt gttttttgcc ggaggatagc
    15481 agcagatcgc tgcacaatgt ccgtcaagtc taacattgat actctggggc aaaatagacc
    15541 ggcgtcccgg cctgctggaa tttatcgcta tgcatacagc tgtcggggca tacgctttac
    15601 agacggcggt gaaacgcctg tcacaatcac actaaacaaa gagtacggaa cccactcatg
    15661 gatattcgta agattaaaaa actgatcgag ctggttgaag aatcaggcat ctccgaactg
    15721 gaaatttctg aaggcgaaga gtcagtacgc attagccgtg cagctcctgc cgcaagtttc
    15781 cctgtgatgc aacaagctta cgctgcacca atgatgcagc agccagctca atctaacgca
    15841 gccgctccgg cgaccgttcc ttccatggaa gcgccagcag cagcggaaat cagtggtcac
    15901 atcgtacgct ccccgatggt tggtactttc taccgcaccc caagcccgga cgcaaaagcg
    15961 ttcatcgaag tgggtcagaa agtcaacgtg ggcgataccc tgtgcatcgt tgaagccatg
    16021 aaaatgatga accagatcga agcggacaaa tccggtaccg tgaaagcaat tctggtcgaa
    16081 agtggacaac cggtagaatt tgacgagccg ctggtcgtca tcgagtaacg aggcgaacat
    16141 gctggataaa attgttattg ccaaccgcgg cgagattgca ttgcgtattc ttcgtgcctg
    16201 taaagaactg ggcatcaaga ctgtcgctgt gcactccagc gcggatcgcg atctaaaaca
    16261 cgtattactg gcagatgaaa cggtctgtat tggccctgct ccgtcagtaa aaagttatct
    16321 gaacatcccg gcaatcatca gcgccgctga aatcaccggc gcagtagcaa tccatccggg
    16381 ttacggcttc ctctccgaga acgccaactt tgccgagcag gttgaacgct ccggctttat
    16441 cttcattggc ccgaaagcag aaaccattcg cctgatgggc gacaaagtat ccgcaatcgc
    16501 ggcgatgaaa aaagcgggcg tcccttgcgt accgggttct gacggcccgc tgggcgacga
    16561 tatggataaa aaccgtgcca ttgctaaacg cattggttat ccggtgatta tcaaagcctc
    16621 cggcggcggc ggtggtcgcg gtatgcgcgt agtgcgcggc gacgctgaac tggcacaatc
    16681 catctccatg acccgtgcgg aagcgaaagc tgctttcagc aacgatatgg tttacatgga
    16741 gaaatacctg gaaaatcctc gccacgtcga gattcaggta ctggctgacg gtcagggcaa
    16801 cgctatctat ctggcggaac gtgactgctc catgcagcgc cgccaccaga aagtggtcga
    16861 agaagcacca gcaccgggca ttaccccgga actacgtcgc tacatcggcg aacgttgcgc
    16921 taaagcgtgt gttgatatcg gctatcgcgg tgcaggtact ttcgagttcc tgttcgaaaa
    16981 cggcgagttc tatttcatcg aaatgaacac ccgtattcag gtagaacacc cggttacaga
    17041 aatgatcacc ggcgttgacc tgatcaaaga acagctgcgt atcgctgccg gtcaaccgct
    17101 gtcgatcaag caagaagaag ttcacgttcg cggccatgcg gtggaatgtc gtatcaacgc
    17161 cgaagatccg aacaccttcc tgccaagccc aggcaaaatc acccgtttcc acgcacctgg
    17221 cggttttgga gtgcgttggg agtctcatat ctacgcgggc tacaccgtac cgccgtacta
    17281 tgactcaatg atcggtaagc tgatttgcta cggtgaaaac cgtgacgtgg cgattgctcg
    17341 catgaagaat gcgctgcagg agctgatcat cgacggtatc aaaaccaacg ttgatctgca
    17401 gatccgcatc atgaatgacg agaacttcca gcatggtggc actaacatcc actatctgga
    17461 gaaaaaactc ggtcttcagg aaaaataatt tgtgacgcgc ggtgttttca tcgcgcttag
    17521 caaagaacgt aatcaacgcc gggcctgtta acgctgcccg gcgtttttat tgccgttagc
    17581 taacggtagc ctgcaatttc cgctttcaac gcgctcattt cagcatcgcc atcaacaatt
    17641 cccagctcaa agcagtattt ctttgtttcc cctggctcaa taaagggcag acgcccctgc
    17701 gctcgttctt tatcacgacc gtcaggaaaa ctattactga cctccagtcc cataacatac
    17761 tcacccgcgc ctaaattttt ccactggata aagttgggta gctgcatggt gtcgaatttc
    17821 tcgtaaattc cccaccccag ttcggcgttc accagagcaa ctttactcat cccctgactg
    17881 tcgctattca acgtgagata gtaaacctgc tcgtcaaaac cgggctgtgg ggtacaaatc
    17941 tccagatgac tggttaaccc ttccgccgca tgcggagttc gtggcgttac gcttttagcc
    18001 gacagcaaga tttctggcct gtggcgataa taaaggccag ccgtaattaa agtgataaag
    18061 aatttgcagc ggctggcggg tgaaaccatg attagtcacc ttgtcttcaa tgcgcagcac
    18121 attttcgcca taacggcagc gaatggtcct ttccagcgtc agattttcgc cgaacagtcg
    18181 cgtttcccgt actttgccat tgatgacaaa ttcaatgccg tcgtcggtcc gttctgtgcg
    18241 ataccccacc tcttctgctg gagtcgcagc caaacgcccg tgtaacccca gcgtttctcc
    18301 ttcatcctca caaggcgtgc caatgtagct aagtccgcag gtagtcagta accccgcgta
    18361 aaagctacgt aaaaatccgt tgccctgaga ctcaaaaaaa gcgggggcga caatgccgtt
    18421 gggggtgata aaagaaagcg ccgtgtcctt gtagctggcc catgcaatat ccagcgcgcg
    18481 atcttttacc accgtaaatg ccagtcccgc accagtacgg acatcaaacg cttctgtacc
    18541 ctttgctctg ccactacgta actcatagtg tttaattccg gcaacctgcg agagatcgcc
    18601 aatccacgac caaatttcgt ttttcattgt gctgcttccc gaatggacat gtcatggcgc
    18661 tggatgaacg cttcgatttc cgcaaggcga gacgttccct ccattgggcc acgtctggtt
    18721 accgccagcg caccgcaggc attggcatat tgcagcgctc gatggacgtc aaaccctagc
    18781 tggcggcagg caatccacgc gccaccaaag cagtctcccg caccggtcgg gtcaacttct
    18841 tccaccggat agctctcaac atgaaactgc tcattcgcgg agtagtaact ggcaccttga
    18901 ttgccgcgct tcacaatcac ctctttaaca ccttcttcaa gaaaacctgc gattgcacgc
    18961 tccggcgtcg aatgtggcga caagagcaac acttcgccct cgctgggcat atagatatcc
    19021 gttaactcaa gaacaaagtg gagggcgtca cgcatttctg gaatatcgag catctcttta
    19081 cgaatattag ggtcgaaaga aataacacca ccatttgctt taacgatagt taccgctttt
    19141 tttactgcgt ctaccatatg aaacgaaaac agggaagagc ccataatatg aaaatgggta
    19201 cagtccttca gaatattttc atcaacatgc tgcgccgata atttaccgca agcggcattc
    19261 ttaatattaa aaataaaatc gcgatcgcca gagttatgat aagtaacaaa ggcactcccg
    19321 gtagcttcca gaggtaagac tgaaatcccc ctgatatcca caccgtcagc agccagacga
    19381 tgtatattaa tatcaccaaa gccatcattc cccacacagc taatgatgcc gcacggaacg
    19441 ccaagacgtg tcacctggtc gataaaaata gcgggcgcac cactgggata agggccgttc
    19501 cagatacctg gttgatcaaa tggctggccg attttactcg ccataatttc aaccagaatt
    19561 tctccaattg tgaagacctt actcatatga ttaattcctt gaaatgatta gctgcgtttt
    19621 cttttatttc ttacgtcaaa ataaacggct acaagaatga ctaatccttt aaccaccatc
    19681 tggtaaaaat agggaacatt cattaagttc atgccattat taataacgcc gatagttaat
    19741 gcgccgatca ccgtccccac cacggttcca tagccgccgt tcaggctggt gcctcccagt
    19801 acagccgcag caatagcatc caattcgtag ctcaacgcgg aattcggtta cccggaatag
    19861 aggcgtgagg cgaggatcat cccgctgata cctgccagca cggctgtaat cataaagact
    19921 ttaattttca ggcgggtgac atttacccct gaataaattg ccgcttcttt attaccacca
    19981 gtgatataaa tttttcgtcc aaaggttgtt ttagtaagaa tgaagtggtt aatcagcaat
    20041 aagatgatta atatccagat tggaataggt atatagagaa attctccatt ccccagtgcc
    20101 agaaaggcat catctttaat catgatgggc ataccatcgg tcactatata agcgatacca
    20161 cggaagatcc ccatagtagc aacggtgaca ataaacgacg ggatccccgc tatagccgtc
    20221 aagccaccat ttatcatccc cagagccagt gctgcaataa tggataatgg gaccaataac
    20281 ataaatggaa ttccccatga agccccaagc gcagcaaatg tgccaatcaa tgcaatggtt
    20341 gaaccgaccg ataaatcaat atcgccaagc aaaagtacat aagtcattcc ataggcggta
    20401 attgcaatta tcgaaacctg aagaataata ttagtaatgt tgttggcggt aaaaaaactg
    20461 tcattaataa aactgaacag aatgattaac accaccattc cactgaggat accgccatat
    20521 tgcctgaaga cttttttaaa attatttgca atgggaattt ccgaaggttt cggactggca
    20581 agagttttct ctgtcattta acgtactcct gttgcagcgg tcattacctg tgtctgcgtt
    20641 aaattttcac atgaataaat atcggcaatc gttttattac gcattaccac cagacgatcg
    20701 ctaagtgcca tgacttctgg cagttcagag gacaccagaa taattgctgt ccctgccgca
    20761 gccagttgac gtatcacgtt atagatttca aattttgcgc cgacatccac tccgcgcgtt
    20821 ggctcatcga gcaataaaat acgcggagtt ttctccagcc acttcgataa cacgattttc
    20881 tgttgattac cgccgctcag cgctcccact gcctgatgta cagaactcac tttagtgttc
    20941 attctggcaa ttgattgcag cgtcttcgcc tcttcttgtc ggtgattgat gagtcccatc
    21001 cgcgaagcgt tatattgaaa cgccacatgg tgcgtgttca tattgacgtc gtgcatcagc
    21061 actaaccctt cttccttgcg gttttcggtc acaaaagcaa tgccatgatc aatagcctgt
    21121 ttaggattag tgatcctgac ttccttacca tc
//
LOCUS       DAJVUN010000063        20736 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.063, whole genome shotgun sequence.
ACCESSION   DAJVUN010000063 DAJVUN010000000
VERSION     DAJVUN010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20736
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.063"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(50..1462)
                     /gene="ftsP"
                     /locus_tag="OQQ76_001934"
     CDS             complement(50..1462)
                     /gene="ftsP"
                     /locus_tag="OQQ76_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsP"
                     /protein_id="HCS1968444.1"
                     /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR
                     GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT
                     VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM
                     WLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ
                     SPYVEVSRGWVRLRLLNASNSRRYQLQMSDGRPLHVISGDQGFLPAPVSVKQLSLAPG
                     ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD
                     SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE
                     PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS
                     QTLEMADRGSIGQLLVNPVP"
     gene            complement(1537..2274)
                     /gene="plsC"
                     /locus_tag="OQQ76_001935"
                     /gene_synonym="parF"
     CDS             complement(1537..2274)
                     /gene="plsC"
                     /locus_tag="OQQ76_001935"
                     /gene_synonym="parF"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HCS1968445.1"
                     /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR
                     LAPLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP
                     FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK
                     TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA
                     AHCRSIMEQKIAELDKEVAEREAAGKV"
     gene            complement(2507..4765)
                     /gene="parC"
                     /locus_tag="OQQ76_001936"
     CDS             complement(2507..4765)
                     /gene="parC"
                     /locus_tag="OQQ76_001936"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HCS1968446.1"
                     /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR
                     IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG
                     QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR
                     LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE
                     AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN
                     KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL
                     DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI
                     IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI
                     LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG
                     WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ
                     GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL
                     PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG
                     EDGLAQLYILPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID
                     SPRRASSGDSEE"
     gene            complement(5311..5793)
                     /locus_tag="OQQ76_001937"
     CDS             complement(5311..5793)
                     /locus_tag="OQQ76_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HCS1968447.1"
                     /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET
                     GLSPVNQSQTFGVAWDDPATTAPKAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA
                     RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGMTEQRLETDVYVPLA
                     "
     gene            complement(5846..6238)
                     /gene="ygiW"
                     /locus_tag="OQQ76_001938"
     CDS             complement(5846..6238)
                     /gene="ygiW"
                     /locus_tag="OQQ76_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB fold stress tolerance protein YgiW"
                     /protein_id="HCS1968448.1"
                     /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNG
                     SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK
                     DTVEIQGEVDKDWNSVEIDVKQIRKVNP"
     gene            6390..7049
                     /gene="qseB"
                     /locus_tag="OQQ76_001939"
     CDS             6390..7049
                     /gene="qseB"
                     /locus_tag="OQQ76_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator QseB"
                     /protein_id="HCS1968449.1"
                     /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP
                     YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKP
                     FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
                     LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE
                     K"
     gene            7046..8395
                     /gene="qseC"
                     /locus_tag="OQQ76_001940"
     CDS             7046..8395
                     /gene="qseC"
                     /locus_tag="OQQ76_001940"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     QseC"
                     /protein_id="HCS1968450.1"
                     /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF
                     DTQLMLFAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLNDG
                     DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV
                     AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP
                     LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL
                     LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID
                     VRLTLNVQGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGV
                     TPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW"
     gene            8505..9086
                     /gene="mdaB"
                     /locus_tag="OQQ76_001941"
     CDS             8505..9086
                     /gene="mdaB"
                     /locus_tag="OQQ76_001941"
                     /EC_number="1.6.5.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase MdaB"
                     /protein_id="HCS1968451.1"
                     /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA
                     DSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK
                     DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM
                     EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG"
     gene            9117..9431
                     /locus_tag="OQQ76_001942"
     CDS             9117..9431
                     /locus_tag="OQQ76_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HCS1968452.1"
                     /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV
                     DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP
                     GI"
     gene            complement(9479..11371)
                     /gene="parE"
                     /locus_tag="OQQ76_001943"
     CDS             complement(9479..11371)
                     /gene="parE"
                     /locus_tag="OQQ76_001943"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HCS1968453.1"
                     /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV
                     DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN
                     KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRN
                     TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG
                     LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG
                     GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
                     ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT
                     SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
                     SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK
                     HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL
                     GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD
                     MAEIEV"
     gene            complement(11400..11981)
                     /gene="yqiA"
                     /locus_tag="OQQ76_001944"
     CDS             complement(11400..11981)
                     /gene="yqiA"
                     /locus_tag="OQQ76_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase YqiA"
                     /protein_id="HCS1968454.1"
                     /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP
                     SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
                     LGQNENPYTGQQYVLESRHIYDLKVMQIDSLEAPDLIWLLQQTGDEVLDYRQAVAYYA
                     SCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL"
     gene            complement(11981..12808)
                     /gene="cpdA"
                     /locus_tag="OQQ76_001945"
     CDS             complement(11981..12808)
                     /gene="cpdA"
                     /locus_tag="OQQ76_001945"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HCS1968455.1"
                     /translation="MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQA
                     VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY
                     SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL
                     LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL
                     ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY"
     gene            complement(12833..13255)
                     /locus_tag="OQQ76_001946"
     CDS             complement(12833..13255)
                     /locus_tag="OQQ76_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 family protein"
                     /protein_id="HCS1968456.1"
                     /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ
                     YRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY
                     DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY"
     gene            complement(13256..13885)
                     /gene="nudF"
                     /locus_tag="OQQ76_001947"
     CDS             complement(13256..13885)
                     /gene="nudF"
                     /locus_tag="OQQ76_001947"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HCS1968457.1"
                     /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQ
                     MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG
                     ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA
                     DENEDIRVHVVSREQAYQWVEEGKIDNAASLIALQWLQLHHQALKNEWA"
     gene            14090..15571
                     /gene="tolC"
                     /locus_tag="OQQ76_001948"
     CDS             14090..15571
                     /gene="tolC"
                     /locus_tag="OQQ76_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane channel protein TolC"
                     /protein_id="HCS1968458.1"
                     /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA
                     DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLAQSIFDMSK
                     WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD
                     QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL
                     NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST
                     GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA
                     SEQLESAHRSIVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV
                     DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE
                     NVAPQTPKQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN"
     gene            15719..16390
                     /locus_tag="OQQ76_001949"
     CDS             15719..16390
                     /locus_tag="OQQ76_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417509.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 family protein"
                     /protein_id="HCS1968459.1"
                     /translation="MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLASCEKSDETV
                     SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA
                     QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY
                     TDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSS
                     RSMGG"
     gene            16396..17556
                     /locus_tag="OQQ76_001950"
     CDS             16396..17556
                     /locus_tag="OQQ76_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1968460.1"
                     /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLTLAQ
                     VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD
                     LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID
                     RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKGQ
                     FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM
                     FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI
                     VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE"
     gene            complement(17594..18382)
                     /gene="ygiD"
                     /locus_tag="OQQ76_001951"
     CDS             complement(17594..18382)
                     /gene="ygiD"
                     /locus_tag="OQQ76_001951"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001356237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HCS1968461.1"
                     /translation="MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVV
                     VSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLVELLAPVPVT
                     LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML
                     VASGNVVHNLRTVKWHGDSSSYPWAMSFNEYVKANLTWQGAVEQHPLVNYLDHEGGAL
                     SNPTPEHYLPLLYVLGAWDGQEPITIPVDGIEMGSLSMLSVQIG"
     gene            18525..19286
                     /gene="zupT"
                     /locus_tag="OQQ76_001952"
     CDS             18525..19286
                     /gene="zupT"
                     /locus_tag="OQQ76_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HCS1968462.1"
                     /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM
                     LLISLMEMLPAALAAEGMSPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLP
                     KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV
                     YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAVAGIMVALSVDELMP
                     LAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG"
     gene            complement(19344..19514)
                     /locus_tag="OQQ76_001953"
     CDS             complement(19344..19514)
                     /locus_tag="OQQ76_001953"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968463.1"
                     /translation="MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYL
                     NSTREETAEKVE"
     gene            complement(19775..20428)
                     /gene="ribB"
                     /locus_tag="OQQ76_001954"
     CDS             complement(19775..20428)
                     /gene="ribB"
                     /locus_tag="OQQ76_001954"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HCS1968464.1"
                     /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI
                     FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA
                     EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL
                     MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS"
     regulatory      complement(20532..20680)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
BASE COUNT         5064 a         5592 c         5219 g         4861 t
ORIGIN      
        1 agaaatcgaa aagtattcca tactcgccct cctcgggcga gtatgaagat tacggtaccg
       61 gattgactaa cagttgccca atcgagccac ggtccgccat ttccagcgtc tgactgttga
      121 agtagaacgg gaagtgcgcc caggaaggct gaccgaaata aacaagcagc tccacttgtc
      181 cgtcaaccca aacggtatct ttccagcctc tgtcttccgg gaacggcatc gcaccattca
      241 cgttacggat ctggaacatc acgccttcaa tatggaacgc ttgcggctcg tccgcgcgta
      301 ccgtccagcg ttcccacgtt ccttgctgcg cggtgacatc aatacggttg acgtcccaca
      361 gttgtccatt aatacccggg tcatcaccca gactgatatc gcgactgcga atcggcgaac
      421 cggccatgat ttcagttggc agcaagcgca tcggaagact gtctgtgacc agcggcagaa
      481 ggccggttgg gcgcagcgtt agcaccaggg tagaaaccag aatgctggat ggctcaaaga
      541 agccacgaat acgatcaaca atgctcgccg cttcgccaca ggtgatcgac acttcatcac
      601 cgttgctcat atccaccaga atctcgcggc gctcgcccgg tgccaacgaa agttgcttca
      661 ccgatacagg agcaggcagg aatccctgat cgccagaaat cacatgtaac gggcgaccat
      721 cgctcatctg tagttgatag cgacgagagt tcgacgcgtt cagcagtcgc aagcgcaccc
      781 agccacgcga gacttcaacg tacgggcttt gtacaccgtt aaccagcagc gtatcaccaa
      841 caaagccgcc gcttcccggt tcgttgtatt ctggcgtacc aaagttatcc agccgtttat
      901 cctggataat gaccggaaaa tcatccacac cataatggtt ggggataggc agcgacttgc
      961 tgacttcatc ttccaccagc cacattccgg caaggccgtt atagacctgc tgagccgtgc
     1021 ggttgggagt attggcgtga taccacagag tagctgcgtt ctggcgaatg ggcagtacgg
     1081 gtgcccagtc agcgtttggc gacatcatcc gtgccggacc gcccatcagc gggcctggta
     1141 cctgtagccc ggccaccgtc attgagacat tttctgtcag gcggttgctg taaataagct
     1201 taacatcgtc gcccttccag acgcggatag tcggccccag gtaacgacca ttgattcccc
     1261 agaccgacgc gcgtgtccct ggcgtaaatg accagtgcgc acgttgtaca gtcataaaca
     1321 gcggttgccc acggcgagat tcaagtagcg gcggaacggg tagcggttgc tgttgcccgg
     1381 ctgcgctggc cttcagggga acagcgccgg cacaaagtgc aatccccgat gcctgaatga
     1441 actgacgccg actgagtgac atatttgctc catgtaaaac tggctaaagt aataccgtgc
     1501 aggaaagtgt tccccgcaaa aatacagatt gccgacttaa acttttccgg cggcttcgcg
     1561 ttctgcgact tctttatcga gctcggcgat tttttgttcc attatcgaac gacaatgggc
     1621 agccagctca cgaacctgat ctttgccata ctgactgacg tcaattggcg gcagcatttc
     1681 gacaatcacc agaccgttgt gcagtcgatt aagattaatc ttattcgaag ttgtagagac
     1741 gcacacggga ataatcggga cgcccgccgc aattgccgcg tgaaatgctc cagtcttgaa
     1801 cggtagcagg ccgcgaccac ggctgcgggt tccttccggg aacatccaga tggaaatacg
     1861 gcgttttttg aaatgattca cgacttccgc aatggtgccg tgagctttag tgcgattgtt
     1921 tctgtcgatc aataagttgc cggttaacca gtacaattgc ccgaagaagg ggatccacag
     1981 caagctcttt ttacctaccg tcaccgtcgg cggttgcaca atgttcgatg ctgtcaccat
     2041 gtcatagttg ttctggtggt tagcgatata gatagcattg ccgtagcttt cagcatctgc
     2101 aggtttgcgg cactcaactt tcaggccgaa cagcggcgca agacggccaa acatatgccc
     2161 aaaggtggcc acatgtttcg ggttacgcgg gctgaaaagg cagtaaatgg agccgaatac
     2221 acagactaag atgctgtaaa tcacggtaat aataagacga aagatatata gcataacaac
     2281 ctctgaaggt ctgagagact ggcattgtac gtcacctgaa atcaggttag ggcattgtta
     2341 aaagccgctc tctggaaaag cgtattgtta atcgcaacgc atgaataaac aacggtttca
     2401 agggaatttt tatcgtttcc gggggttgaa tacgctgccg aatgacgact taacgtttca
     2461 tccggcgttc cttgcaagcg ggaggaaaca ggccctcccc ggcatattac tcttcgctat
     2521 caccgctgct ggcacggcga ggagagtcga tctcaacacg atcgatacgc tgcaaaccgc
     2581 gcatcaacgt accgcggcgt ccacgttcgc cagtgacttt ctgtaactct tccgggcgca
     2641 gtttaatttt gcgtttccca acatgaatgg tcagcgtgct ttgcggcggc agaatgtaca
     2701 attgcgccag accatcttct ccacgcgcgg cttctgccga tggaatgttg ataatcttgt
     2761 tgcctttgcc cttcgacagc tgcggcagat cgcttaccgg gaacatcaac atacggcctg
     2821 cctgagtgat tgccagcagc atatcggaag catcttcaat caccaccggc ggcataacat
     2881 gggcattttc cggtaaggtg atcaaagcct tacctgcacg gttacgcgcc accagatcgt
     2941 taaaggtgca gacgaaaccg taacccgcat cggaagccat cagcagtttc tgatcgtcgc
     3001 tttccatcag catatggtca acggtcgccc caggcggcaa cgttaatttg ccggtgagtg
     3061 gttcgccctg accacgcgcc gacggcagcg taatcgggtc gatggcatag ctacgaccgg
     3121 tggaatcaac aaacactacc ggttggttgc tcttaccttt caccgccgct ttgaagctat
     3181 cacccgcttt ataattcagg cccggcgcgt cgatatcatg gcctttagcg ctgcgtaccc
     3241 agcccatctg cgacagcaca atggtgacag gttcagacgg cagcatgtcg tgctcgctca
     3301 tcgctttcgc ttcttcgcgt tcctgcaacg gcgaacgacg atcgtcaccg taggcttgcg
     3361 cgtctgcctg cagttctttc ttcagcaggt tattcatttt acgctcggaa accaaaatgc
     3421 cctgcaactg gtcgcgctct ttttccagct cactctgctc accgcgaatc ttcatctctt
     3481 ccagtttggc aagatgacgc agtttcagtt cgaggatcgc ttccgcctgg gtttccgtaa
     3541 ggccaaaccg cgacatcagc gccggtttcg gttcatcttc gttacgaatg atctcaatca
     3601 cttcgtcgat gttgagaaac gccaccagca aaccttccag gatatgcagg cgcttgagga
     3661 ctttctccag acgatagttc agtcggcggc gcacggtatc gcgacggaac accagccatt
     3721 cggagaggat ttccagcagg tttttcaccg ccggacgacc atccagaccg atcatattga
     3781 ggttaatgcg atagctcttt tccagatcgg tggtagcgaa gaggtggttc atcacctgat
     3841 ccatatccac gcggttggaa cgcggcacaa tcaccagacg ggtcgggttc tcgtggtcag
     3901 attcatcgcg cagatcgtca accatcggca gctttttgtt gcgcatttgc gcagcaattt
     3961 gctccagtac gcgcgcacct gaaacctgat gcggcaatgc gctgataacc accgcgccat
     4021 cttctttctt ccacaccgcg cgcatacgca ctgaaccacg tccgttctcg tagattttac
     4081 ggatctcggc gcgcgaagtg ataatttccg cttcagtcgg ataatccggc ccctgcacga
     4141 tatccagcag ctgatcgagc gtggttttcg gctggtcgat taatgcgatt gccgcctgag
     4201 ctacttcacg caggttatgc ggtggaatat cggtcgccat gccgacggca ataccggtgg
     4261 tgccgttaag caaaatgttt ggcagacggg caggcagcat tttcggctcc tgcaaagtgc
     4321 cgtcgaagtt tggcacccag tcagccgtcc cctgccccag ctcgctcaat agcagctcgg
     4381 aatatttcga caaccgggat tcggtgtaac gcattgccgc gaacgatttc ggatcgtccg
     4441 gcgcgcccca gttcccctga ccatcaacca gcggataacg gtaagagaac ggctgcgcca
     4501 tcaggaccat cgcttcataa caggcgctat cgccgtgcgg atggtattta cccagtacgt
     4561 caccgacggt acgggccgat tttttaaatt tagcgctggc attcaggccc agttcagaca
     4621 tcgcatacac aatgcggcgc tgaacaggtt taagaccatc gccaataaac ggcaacgcac
     4681 ggtccatgat cacgtacatg gagtagttta agtaggcgtt ttccgtaaat tcatgtagcg
     4741 caaggcgctc tgccatatcg ctcattaatt ctgattcctc aacttattcg ccagccttca
     4801 aaggggcaat attgccggag atactacatt atctgccgcg tcgagtcaca ggagatcagc
     4861 gtgaatagcg ccgccggacg tgctccgacg gcgataaagg catcaatgtg ccttgatata
     4921 caactctttg ctgtagactt gatcggcata gagggcagca caaagttgcg cccatgccac
     4981 accactcggc atgggggtcc gctccgggcg attcgagaag ttgaggttat gcgagtccag
     5041 ggaagcctaa agcatcaaag tagtcgactg taagtatacg gttcagccca gtttagctgt
     5101 gtctccacca gtgccccgcg cctcctgcca taagtgcggc ttgctcatgg atacccccga
     5161 gacggcttac ggcgcaccgg ataataaatt tcgcgtatac atggtattcc ttaccggaga
     5221 aattataagc ccaacaacaa tacgcctgtg gcattgttcg ctcaaactta tcgcgagtga
     5281 tttggctcac actccggtaa agattcccca tcacgctaac ggcacataaa catccgtttc
     5341 cagtcgctgt tctgtcatac cttcggcaag attggtgtag tgaaacagaa tcggtgcttt
     5401 acgcattttc tcgccgcttg caggcagcca gtggcgaatg atgccccata ccgtgtgtga
     5461 aatatcgtcc agctcgccaa cgtggcgggc cacggcataa cgtccaccgg taagttcacc
     5521 attgctcaca ccataacgat tatcgggaat cggttcgcta acgctgccgc agatatcaaa
     5581 gcgaaacgct ttcggtgcgg tggtggcagg gtcgtcccag gcgacgccaa aagtctggct
     5641 ttggttaaca ggagaaagcc ccgtctcttt acgccacatg ataaatttcg ccacactgta
     5701 gttgagcaac tcagggctac agcggtgcgg caacatcgcc acagggattg atgggaaatc
     5761 gataatgttt acatccagtg tcaggtttgt cattttgcct ccctgcgaaa ttattcccgg
     5821 gaacgcgtcc cgggagcggt aacaattacg gatttacttt gcggatctgt ttgacgtcaa
     5881 tttcaacaga attccagtct ttatcgactt ccccctgaat ctcaaccgta tctttcggcg
     5941 tcaccgtcac accgttccag cgtttgtggt cgatatcaac attgatagta ccgctggcat
     6001 ctttaaacac gtagagatcg tcagagatgc gttcaacgat attgccgcgc agggttaccc
     6061 aggtgtcgtc acgcagggat tttgcgcttt ctacagtcgt tacgctgccg ttcggcccct
     6121 ggaatcctcc ggcctgactt tgcgttgccg atgggccaga aaaaccgccc tgctctgctg
     6181 ccatcaccgg tgcactgcac agggccatta ctgcgattac tgctgcgaat tttttcatgt
     6241 ttattactcc ctttaatgtc tgtttccgag catttaacaa gatagtcctt aacaacttct
     6301 taagggaaaa aaataaaatt taatgctgta cagagcgcgt tacaacacgg tttactggca
     6361 gcaaatacgg ttatcgcagg gatgaaaaaa tgcgaatttt actgatagaa gatgacatgc
     6421 tgattggcga cggcatcaaa actggcctta gtaaaatggg ttttagtgtc gactggttta
     6481 cacaaggtcg tcagggaaaa gaggcgcttt atagcgcacc ttatgatgcg gtgatcctgg
     6541 atttaacctt accaggcatg gatggtcgcg atattttgcg cgaatggcga gagaaaggtc
     6601 agcgtgagcc ggtactgatc ctgaccgcgc gtgatgcgtt agcggaacgt gtagaagggc
     6661 tgcgtcaggg agctgacgat tatctgtgta aaccttttgc gttgatagaa gtcgccgcca
     6721 ggctggaggc tctgatgcgc cgaaccaacg gccaggccag caacgagctg cgccacggta
     6781 acgtcatgct cgaccccggc aaacgtatcg ccacgctggc tggcgaaccc ttaacactga
     6841 aaccaaaaga atttgccctg ctggaattac tgatgcgtaa cgctggtcgg gtactaccgc
     6901 gcaaactgat tgaagagaaa ctgtatacct gggacgaaga ggtcaccagt aatgccgttg
     6961 aagtgcatgt gcatcatctg cgacgcaaac tcggtagtga ttttattcgt accgtgcatg
     7021 gtattggcta cacattaggt gagaaatgaa atttacccaa cgtcttagtc tgcgcgtcag
     7081 gctgacgcta atctttttaa ttctggcctc ggtgacctgg ctgctttcca gctttgtcgc
     7141 ctggaaacaa acaacggata acgtcgatga attgttcgac acccaactga tgctgtttgc
     7201 caagcggtta agtacgctcg atctcaacga aatcaacgcg gcggatcgca tggcacagac
     7261 gccaaataaa ttaaaacacg gtcatgttga tgacgatgcg ctgacctttg ccatctttac
     7321 ccacgacggc agaatggtcc ttaatgatgg cgataacgga gaagatattc cctatagcta
     7381 tcaacgggaa ggttttgctg acgggcaact ggtcggtgaa gacgatcctt ggcgttttgt
     7441 ctggatgacc tcacctgatg gcaaatatcg catcgttgtt ggccaggaat gggaataccg
     7501 tgaagacatg gcgctggcga ttgttgccgg gcaattgatc ccgtggctgg tcgcactgcc
     7561 gattatgtta atcatcatga tggtactact gggtcgtgaa ctcgcgccgc tgaacaaact
     7621 ggcgctggca ctacgtatgc gtgaccctga ctcggaaaaa ccactaaacg cgactggcgt
     7681 acccagcgaa gtgcgaccac tggttgagtc gctaaatcaa ctgttcgccc gcacacatgc
     7741 gatgatggtt cgagaacgac gctttacctc cgatgcagct cacgaactac gtagcccgtt
     7801 aacagcgctg aaagtgcaaa ccgaagttgc gcagctctct gacgatgatc cgcaggcgcg
     7861 gaaaaaagca ctgctccaat tacattccgg gatcgatcgc gctactcgtc tggttgatca
     7921 actgctcacg ctatcgcggc tggactcact ggataacctt caggacgtcg cggagatccc
     7981 gcttgaagat ctcctgcaat cgtcggtgat ggatatttac cacacggcgc agcaggcgaa
     8041 aattgacgtg cgactgacac tcaatgtcca gggcatcaaa cgcaccggac aaccgctatt
     8101 gctaagtttg ttggtgcgaa atttgctgga taacgccgtg cgttacagtc cacagggcag
     8161 cgtggtggac gtcacgctga atgccgataa tttcatcgtg agggataacg gccccggtgt
     8221 gacaccagag gcactggcgc gaattggcga acgcttctat cgcccccccg gacaaaccgc
     8281 taccggcagt ggacttgggc tatcgattgt ccagcgaatc gccaagctgc atggcatgaa
     8341 tgttgagttt ggaaatgcgg aacaaggtgg atttgaggcg aaagtaagct ggtaagggta
     8401 agacttttgc taaattcgca aaagactttg cacattttgc taatttcacc gtaccgctct
     8461 gtgacgtact atagtcggca aacgtctcac cttgaggtta aaaaatgagc aacattctga
     8521 ttatcaacgg cgcgaaaaaa ttcgcccact ccaatggtca actgaatgac accctgaccg
     8581 aagtcgcgga tggcacactg cgcgacctcg ggcatgatgt tcgcatcgtt cgcgccgaca
     8641 gcgactacga tgtcaaagcg gaagtacaaa actttctctg ggctgatgtg gtgatctggc
     8701 agatgccagg ctggtggatg ggcgcgccgt ggacagtgaa aaaatacatt gatgatgtat
     8761 tcaccgaagg tcacgggacg ctgtatgcca gcgatggccg tacccgcaaa gatccgtcaa
     8821 aaaaatacgg ttccggcggc ctggtacagg gcaaaaaata tatgctttct ctgacctgga
     8881 acgcaccaat ggaagccttc accgaaaaag atcaattctt ccacggcgtt ggcgtcgacg
     8941 gtgtgtatct gccgttccat aaagcaaacc aattccttgg catggaaccg ctgccgacat
     9001 ttatcgctaa tgacgtgata aaaatgcctg atgttccccg ctatactgaa gaatatcgca
     9061 agcatcttgt ggaaattttt ggttaactag agctcaggct ttagaaggag ttaaccatgc
     9121 ttaccgtaat cgcagaaatc cgtactcgtc ctggtcaaca tcaccgtcag gcggtattgg
     9181 atcagtttgc taaaatcgtt ccaaccgtac tgaaagaaga aggttgccac ggctatgcgc
     9241 caatggtgga ttgcgctgct ggcgtgagtt tccagtctat ggcaccggat tctatcgtga
     9301 tgattgagca gtgggaaagc atcgcgcacc ttgaagcgca tctgcaaacc ccgcacatga
     9361 aggcgtacag cgaagccgta aaaggtgacg tgctggagat gaatattcgt attctgcagc
     9421 cagggattta atcctgcctt gtttgcccgg ccatcctgac cgggcaatgt tctttccttt
     9481 aaacctcaat ctccgccatg tcgcctttct cttgcaacca gttgcggcga tcttccgagc
     9541 gtttcttcgc cagtagcatg tccatcatcg cgtcagtacg ctgatcgtct tcatcatcga
     9601 tagtcaactg caccagacgg cgagtgttcg gatcaagcgt ggtttcgcgc aattgcatcg
     9661 ggttcatttc ccccagacct ttaaaacgct ggacgttcgg cttgcctttc ttgcgtttta
     9721 attgctcaag tacgccctct ttctcttctt ccgtcagcgc gtaataaacc tctttcccga
     9781 gatcaatacg gtagagcggt ggcagtgcga cgtaaacgtg accgtgtttc accaacgcgc
     9841 ggaagtgttt tacaaacaaa gcgcagagca gcgtggcaat gtgcagacca tcggagtcag
     9901 catccgccag gatacagatc ttgccgtaac gaagctggct caaatcgtcg ctgtcaggat
     9961 cgataccgat cgctaccgaa atatcgtgca cttcctgcga agccagcact tcgtcggaag
    10021 agacttccca ggtgttaagg atcttacctt tcagtggcat gatcgcctga tattcgcgat
    10081 cgcgcgcctg cttggcagat ccgcctgcgg agtcaccttc cacaagaaac agttcggtgc
    10141 ggttaaggtc ctgcgcggta cagtcagcca gtttgccagg cagcgccgga ccgctggtca
    10201 gctttttacg caccactttt ttagccgcac gcatacgacg ctgggcgctg gaaatcgcca
    10261 tctctgccag caactccgcc gcctgaacgt tctggttcag ccacaggata aaggcatctt
    10321 tcaccacgcc agaaacgaat gccgcgcact gacgcgaaga gagacgctct ttggtctgcc
    10381 cggcaaactg cggatcctgc atttttactg acagcacata ggcgcagcga tcccagatat
    10441 cttccgccga cagctttaca ccgcgcggca gaatgttgcg gtattcacag aactcacgca
    10501 tcgcgtccag caggccctga cgcagaccat taacatgggt accgccctgc atcgttggga
    10561 tcaggttgac gtagctttcg gtcagcagtt caccgccttc cggcagccac agtagcgccc
    10621 agtccaccgc ttcagtatcg ccagcgaaat taccgataaa cggtttttct ggcagcgtcg
    10681 gtaaaccgtt taccgcttcc gccaggtaat cattcagacc gtcctgatag caccagcgct
    10741 gttcggtgtt gttgatctca tctttaaagg taatctcaac gccggggcac agtactgctt
    10801 tggctttcag cacatgcgtc aggcgtgaaa cagaaaaacg cgggctatcg aagaaggttt
    10861 catccggcca gaaatggacg ctggtgccgg tattgcgttt accgcaagtg ccgacaacct
    10921 gtaaatcctg caccttttcg ccattttcaa aggcgatgtt ataaatctga ccatcgcggc
    10981 gcacgttaac ttctacgcgc ttcgacaggg cgttaaccac cgaaatcccc acgccatgca
    11041 ggccgccaga gaactggtaa tttttgttag agaatttacc gcctgcatgc agacggcaaa
    11101 gaatcagttc aaccgccggt acaccctctt ccgggtgaat atccaccggc atcccgcgcc
    11161 catcgtcaat aacttctaac gactggtcag catgtaaaat aacgtccacg cgttttgcgt
    11221 gacccgccag tgcttcatcc acactgttat caatgacttc ttgccccaaa tggttagggc
    11281 gagtggtatc ggtatacatc cccggacggc ggcgaaccgg ctcaagtccg gtgagtacct
    11341 caatggcatc agcgttataa gtttgcgtca tggtttaagt tagtaattcg agttgatcgt
    11401 cagagatggt gcagaccaag aaaatcgacg atcgggttga aataatcttc gaagcccgtg
    11461 aatgcgtggt tgccgccttc tatgacagtc tggcggcagg aagcgtagta cgccaccgcc
    11521 tggcggtaat ccagcacttc atctcccgtc tgttgcagca gccagatcaa atccggcgct
    11581 tccagcgagt caatctgcat gactttaaga tcgtaaatat ggcgtgactc tagcacatat
    11641 tgctgcccgg tgtaggggtt ctcgttctga ccgagatagt ccgtcagcag ttcaaacggg
    11701 cgcaccgccg ggtttaccac cactgcgggc agcataaaac attgtgacaa ccaggtggcg
    11761 taatatcccc ccagtgacga accgacaata cccagcgaat cgccgccatg ttccaggaca
    11821 atggattcca gcagctctgc cgcgtcggaa ggatacggcg gcaactgcgg aatgatcatc
    11881 tcaacgtcag ggtgatgttc cgccagccag ttttttaaca agctcgcttt tgcagagcgc
    11941 ggcgagctgt tgaaaccgtg taaataaaga agcgtagaca tcagtagcct tctgaagcgg
    12001 tatcaggttg gaaacgtgtg tccgccaggc gatgcacctc ggtggtcagc gtgccatcag
    12061 catgtaactc gagagtacgc cagccgggcg cgatggtatc cagcgtaaag ttggaacagt
    12121 gcggcttaaa ctgcacacag gtcgacggcg ttgccagcag gcggcgaccg ttccagtcga
    12181 gatccagctc ctgatgaata tgaccgcaca gcaagtattt gacgtgcgga aacttcgcca
    12241 gcacggtatc cagttcgccc gcgttacgca gactgtgttg atcgagccaa ctacaacccg
    12301 caggtagcgg atgatgatgc agcagcagca acgtatggcg ttctggcgca tcggccagtt
    12361 tacgttccag ccactcaagc tgaaactcgc tcagctcacc gtgcggcacg ccaaacacct
    12421 ggctatccag caacaggatt tgccattgct caccaataaa cacgcgcttc gccggggaga
    12481 tacccgcatc ctgtaacgcg ctgtacatcg cgggctggaa atcgtggttg cccggcagcc
    12541 agacgcaggg cgcacgaaaa cttgcgatgc cttcagcgaa atgctgatag gccgcagagg
    12601 attgatcctg cgctaaatca cctgtcgcga caatcaggtc gaattcgtgc tgatgtggac
    12661 gaatcgcctc cagcaccgcc tggtagcttt cccaggtgtt tacccctaac agggcttcgt
    12721 gcttttgtgc aaacaggtga gtatcggtaa tttgtaaaat cctgactctg gcctcaccag
    12781 ccagaggaag ggttaacagg ctttccaaat ggtgtcctta ggtttcacga cgctagtaaa
    12841 ccggaatcgc catcgctcca tgtgctaaac agtatcgcaa ccagtccgct aaaaactggt
    12901 taatttgatg cttttcgtcg cgttgatgca actttttatt aggataatca taccgcgctt
    12961 tgaagcgaaa aatctgctgg cttgaacaca cttcagccac catcgcgtca tgatacagac
    13021 gcaccgtcat tgacggaagg ctccagtaac tgatcgcggg cgcagtctgt tctattgtca
    13081 ccagggtagt gtatcgggtc gattccacaa tcgtcagccg atattgtgcg tttgccacct
    13141 gatagcttac agtttcgccg ggtgcgtcat tgcgcggtaa caaacggcgc aattgtgaaa
    13201 agttcatctc gcacaggcgc atcatttcag gaaagtcagg tgtgtaacgc ttcatttatg
    13261 cccactcatt ttttaacgct tgatggtgca gctgcagcca ttgcaaagcg atgagcgacg
    13321 ctgcgttgtc gattttcccc tcttctaccc actggtatgc ctgttcccgg cttaccacat
    13381 gaacgcgaat atcttcgttt tcatcagcca gaccatgaat accgcttgcg gtcgtggcgt
    13441 ccacttcgcc caccataatt gacgaacgct cactggtgcc ccccgggctt gccaggaaac
    13501 ttaacaccgg tttggtccgt ttgactatca gccccgcctc ttcaatcgct tcgcgacggg
    13561 caacatcttc cacactttca ccctcttcaa tcatcccggc aaccatctcc agtagccagg
    13621 gggtttcgct agtgtcgtac gcggcaattc gaatctgctc aatcagcaca acttcatcac
    13681 gcactgggtc aaagggtagc aagactgcgg cgtgaccgcg ctcaaaaatt tcccgccgca
    13741 cctcatgact catttgcccg ttgaatagac gatgacgaaa tctataaaga tctaatgaaa
    13801 aaaagccgcg ataaagtgtt tctcgtgcaa taatttctac atcgtttttg ccaaatgtaa
    13861 cgggcaggtt gtctggctta agcattgtta atgtcctggc actaatagtg aattaaatgt
    13921 gaatttcagc gacgtttgac tgccgtttga gcagtcatgt gttaaattga ggcacattaa
    13981 cgccctatgg cacgtaacgc caaccttttg cggtagcggc ttctgctaga atccgcaata
    14041 attttacagt ttgatcgcgc taaatactgc ttcaccacaa ggaatgcaaa tgaagaaatt
    14101 gctccccatt cttatcggcc tgagcctttc tgggttcagt tcgttgagcc aggccgagaa
    14161 cctgatgcaa gtttatcagc aagcacgcct tagtaacccg gaattgcgta agtctgccgc
    14221 cgatcgtgat gctgcctttg aaaaaattaa tgaagcgcgc agtccattac tgccacagct
    14281 aggtttaggt gcagattaca cctatagcaa cggctaccgc gacgcgaacg gcatcaactc
    14341 gaacgcgacc agtgcgtccc tgcagttagc tcaatccatt tttgatatgt cgaaatggcg
    14401 tgcgttaacg ctgcaggaaa aagcagcagg gattcaggac gtcacatatc agaccgatca
    14461 gcaaaccttg atcctcaaca ccgcgaccgc ttatttcaac gtgttgaatg ctattgacgt
    14521 tctttcctat acacaggcac aaaaagaagc gatctaccgt caattagatc aaaccaccca
    14581 acgttttaac gtgggcctgg tagcgatcac cgacgtgcag aacgcccgcg cgcagtacga
    14641 taccgtgctg gcgaacgaag tgaccgcacg taataacctt gataacgcgg tagagcagct
    14701 gcgccagatc accggtaact actatccgga actggcggcg ctgaatgtcg aaaactttaa
    14761 aaccgacaaa ccacagccgg ttaacgcgct gctgaaagaa gccgaaaaac gcaacctgtc
    14821 gctgttacag gcacgcttga gccaggacct ggcgcgcgag caaattcgcc aggcgcagga
    14881 tggtcactta ccgacgctgg atttaacggc ttctaccggg atttctgaca cctcttatag
    14941 cggttcgaaa actcgtggtg ccgctggtac ccagtatgac gacagcaata tgggccagaa
    15001 caaagtgggc ctgagcttct cgctgccgat ttatcagggc ggaatggtta actcgcaggt
    15061 gaaacaggcc cagtacaact ttgttggtgc cagcgagcaa ctggaaagcg cgcatcgtag
    15121 catcgtgcaa accgtacgtt cctccttcaa caacattaat gcatctatca gtagcattaa
    15181 cgcctacaaa caagccgtag tttccgctca aagctcatta gacgcgatgg aagcgggcta
    15241 ctcggtcggt acgcgtacca ttgttgatgt gttggatgca accaccacgc tgtacaacgc
    15301 taagcaagag ctggcaaatg cgcgttataa ctacctgatt aatcagctga atattaagtc
    15361 agccctgggt acgttgaacg agcaggatct gctggcactg aacaatgcgc tgagcaaacc
    15421 ggtttccact aatccggaaa acgttgcccc gcaaacgccg aaacagaatg ctattgctga
    15481 tggttatgcg cctgatagcc cggcacccgt cgttcagcaa acatccgcac gcactaccac
    15541 cagtaacggt cataaccctt tccgtaactg atgacgacga cggggcttcg gccccgtctg
    15601 aacgtaagac aacgtaaaga tacgggttat ctgccgcatt cttccccctt ctcgcttcaa
    15661 tttcgaccag ccatcctcta ttctgatggg tatttaccac tggtcccgga agacaaaaat
    15721 gaaacggaca aaatccatac gccacgcatc gttccgcaaa aactggagcg cacgccatct
    15781 gacaccagtc gctctcgcgg ttgccactgt ttttatgctg gctagctgtg aaaagagtga
    15841 tgaaacagtg tctctctatc aaaatgctga cgactgttca gctgcaaacc caggcaaaag
    15901 cgccgaatgt accaccgcgt acaacaatgc gctgaaagaa gccgaacgta ctgcgccgaa
    15961 atacgccacc cgtgaagact gtgttgctga atttggtgaa ggtcagtgcc agcaggcacc
    16021 agcccaggct ggcatggcac cagaaaacca ggcgcaggcc cagcaatcca gcgggagttt
    16081 ctggatgccg ctgatggccg gttacatgat ggggcgtctg atgggcggcg gcgcgggatt
    16141 tgcacagcag ccgctgttct cctcgaaaaa cccagccagc ccggcttacg gtaaatatac
    16201 cgacgcgacg ggtaaaaact atggcgcagc ccagccaggc cgcaccatga ccgtaccgaa
    16261 gacagccatg gcaccaaaac cggcgaccac tactaccgtt acccgtggcg gttttggtga
    16321 atctgttgcc aaacaaagca ctatgcagcg tagcgcaacc ggcacctctt ctcgttcaat
    16381 gggtggctga taccgatgga aagagtcagt attaccgagc gcccggactg gcgtgaaaaa
    16441 gcccacgaat acggtttcaa ttttcacacc atgtacggcg agccgtactg gtgtgaagat
    16501 gcttactaca agttgaccct cgcccaggtt gaaaagctgg aagaagtcac cgccgaactg
    16561 caccagatgt gcctgaaagt ggtggaaaaa gtgatcgcca gcgatgagct gatgaccaaa
    16621 ttccgcattc caaaacacac ctggagtttt gtgcgtcagt catggctgac tcaccagcca
    16681 tcgctttatt cgcgtcttga tctggcatgg gatggcactg gcgaacctaa actgctggaa
    16741 aataacgccg atacaccaac gtcactatac gaggcggcgt tctttcagtg gatctggctg
    16801 gaagatcagc ttaacgccgg taacttgccg gagggcagcg accagtttaa cagtctgcaa
    16861 gaaaagctaa tcgatcgctt tgtcgagttg cgtgaacagt atggcttcca gttgctgcat
    16921 ctcacctgct gtcgcgacac ggtggaagat cgcggaacca ttcagtattt gcaggactgc
    16981 gcgacggaag ctgaaatcgc taccgagttc ctctacattg acgatatcgg gttaggtgaa
    17041 aaaggtcagt tcacggattt acaggatcag gtaatttcca acctgttcaa gctgtatcca
    17101 tgggaattta tgttgcgtga gatgttctcc accaagctgg aggatgcagg cgtacgctgg
    17161 ctggaaccgg cgtggaagag cattatctcc aacaaagcgc ttctaccgct actgtgggag
    17221 atgttcccga atcacccgaa cctgctgccc gcttattttg cggaagatga tcatccgcaa
    17281 atggaaaaat atgtggttaa accgatcttc tcccgtgaag gcgcaaacgt gtcgatcatt
    17341 gagaacggca aaaccattga agcagcggaa ggtccgtatg gcgaagaagg gatgattgtt
    17401 cagcaattcc atccgttacc gaaattcggc gacagctata tgctgattgg tagctggctg
    17461 gtgaacgatc aacccgccgg aattggcatt cgtgaagacc gtgcattgat cacccaggat
    17521 atgtctcggt tttatccaca tatttttgtt gagtaatcaa tgatgccgga tggcattcgc
    17581 catccggtaa ttgttaacct atctgcaccg acagcatact caggctgccc atttctatac
    17641 catcgaccgg aatggtaatt ggctcctgcc catcccacgc acctaagaca tacaacaacg
    17701 gcagatagtg ctccggcgtt gggttcgata acgcgccacc ttcatggtcg aggtaattca
    17761 ccagaggatg ctgctctacc gccccttgcc acgtcagatt cgctttcaca tactcattaa
    17821 acgacatcgc ccaaggatat gatgaactat caccgtgcca cttcactgta cgcaggttat
    17881 gcaccacgtt gccactggcg accaacatta ttccttcatc tcgcagcgct gccagtttgc
    17941 gccccatttc gaaatgccag gcggcaggtt tgctactgtc gatactcaac tgcaccatcg
    18001 ggatatcggc gtcaggatac atcttaatca gcacgcccca ggaaccgtgg tcaaagcccc
    18061 aggcttcttt atccagcgtc accgggaccg gcgctaacag ctcaaccaga tgctgtgcca
    18121 gcacaggcga acccggagca ggataatgcg tatcgtacag cgcctgcggg aagccaccaa
    18181 agtcatgaat cgtgggcggc gtctccatcg cggtcactcc tgttccacgg gtaaaccagt
    18241 gagccgaaac caccacaatc gcttgcgggc gtggcaatgt catccccaac ttctgccagc
    18301 tgcgggtata caaattatct tccagcacgt tcatcggact accgtgacct aaaaacaatg
    18361 ctggcatacg tgttgaagac atgatgatat ccttaactaa gggtgtcatt ttgatatcct
    18421 cacaatacgc ttgttcggcg gagtaagaac ccggataaca atgatgatga tcatcagtta
    18481 ttttgacgat ctgcctgaag gtgaagattt ataaggagtt gtcgatgtca gtacctctca
    18541 ttctgaccat actggcgggg gcagccacgt ttattggcgc gtttctcggc gttctcggac
    18601 aaaaaccctc gaaccgctta ctggcgtttt cgctaggttt tgcggcgggg atcatgttgc
    18661 tcatctcatt aatggaaatg cttcctgccg cactagcagc tgaaggaatg tcgcctgtgt
    18721 tgggttatgg aatgtttatc ttcggtctgc ttggctactt tggcctggac cgcatgttgc
    18781 cgcatgcgca tccgcaggat ttaatgcaaa aatcggtgca gccgttgcca aaatcgatca
    18841 agcgcacagc cattctgctc actctcggca tcagtctgca taacttcccg gaagggattg
    18901 ccacctttgt cacggcgagc agcaacctgg agctgggatt tggcatcgca ctggccgtcg
    18961 cgttgcacaa tatccctgaa ggtctggcag tggcaggccc ggtttatgcg gcaacggggt
    19021 ctaaacgcac cgcgattctg tgggcgggga tttctggact agcagaaatt cttggtggtg
    19081 tgctggcgtg gttaatcctc ggtagcatga tttccccggt ggtcatggcg gcggttgcag
    19141 gaattatggt ggcgctctcg gttgatgaat taatgccgct cgccaaagag attgacccta
    19201 ataataaccc cagctatggc gtactatgtg gaatgtcagt gatgggattc agtttagtgc
    19261 tactacaaac ggcgggaatt ggttaaaaac aacatcagaa gttgtccagc acatggacaa
    19321 cttctgccag cttcacgaaa gccttattct accttttcgg ctgtctcttc tctcgtactg
    19381 tttaagtatt tgttccgcgc ttcaagcagt gcgtctctgt cctggcgaaa cgcccgacaa
    19441 taacgtttca aatgcaggaa ataacccacc acaaccagag caatcaatac aatccagtac
    19501 caggcgataa acatcctttt acccttaata tttaacaata ctaaacattt agcgcataaa
    19561 tttcacatat cctttttcgg atatattcat atggtcgcat aataacggaa caattatatg
    19621 attttgatca taatgaaaaa gaatgcctga tattaatgaa attttctcat agaaagagaa
    19681 gcggaattaa catcttgcat agcagggcaa aataaaaacc gaagccagct acaacttcgg
    19741 tttcttgatt aaggcagtaa ttaagcagcg gttttcagct ggctttacgc tcatgtgcct
    19801 gacggtatgc caccaggtct tcaatagtca cgagcgccat attgtgttta ttggcaaact
    19861 caatgcactc tggtgcacgc gccatcgtgc catcgtcatt agtcagctca cacagcacac
    19921 cagccggttt aaagcctgcc agcgtcatca aatcaatagt cgcttcagta tgaccgccac
    19981 gcgtcagtac accacctgcc tgcgcgcgaa gtgggaaaac gtggcccggg cgattcagat
    20041 cagaaggttt tgcgccatcg gcaatcgctg cgcgaacggt cgtaatacga tcagcggcag
    20101 aaacaccggt agtcacacct tcagccgctt caatggtcac ggtaaaaccg gtgccatagg
    20161 cgctggtgtt attttctacc atcattggca gatcaagttg tttacggcga tcttcagtga
    20221 tgcacaggca aacaataccg ctaccgtggc gaatggtcag cgccatctgc tcaacggtca
    20281 tggtttctgc cgggaagatc atatcgcctt cgttttcacg gtcttcatca tcaagcacca
    20341 ttacaccgcg tccttcacgc agcgcagcca gtgcattttc aacacgttcg aaaggcgtac
    20401 caaaagagga aagtagcgtc tgattcatgg taaaaaaaac tcactaaaat tatggttacc
    20461 agaatcaggg cagtcttagg agtggcggca tatagccaaa ataacgtgag cgggtccatg
    20521 cccgacagaa tcgttactct ctcccatccg gactctaacc gtcggccccg gaattacacc
    20581 ggatctgctg tcctttgagt tcgcacccaa agcgctcgcg ggctttcaac tgagttgatt
    20641 taccgccggt ggggaatttc gccccgccct gagaataagc ggattcacta taacgctaat
    20701 gattagcggc agcaacgcat agcttcacat aattct
//
LOCUS       DAJVUN010000064        20524 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.064, whole genome shotgun sequence.
ACCESSION   DAJVUN010000064 DAJVUN010000000
VERSION     DAJVUN010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20524
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.064"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(226..771)
                     /gene="hemG"
                     /locus_tag="OQQ76_001955"
     CDS             complement(226..771)
                     /gene="hemG"
                     /locus_tag="OQQ76_001955"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HCS1968465.1"
                     /translation="MKTLILFSTRDGQTREIASYLASELKELGIQTDVANVHRIEEPQ
                     WKNYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTN
                     SYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTD
                     WEQVANFAREIAQLTNKPTLK"
     gene            complement(783..2234)
                     /gene="trkH"
                     /locus_tag="OQQ76_001956"
     CDS             complement(783..2234)
                     /gene="trkH"
                     /locus_tag="OQQ76_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkH"
                     /protein_id="HCS1968466.1"
                     /translation="MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFF
                     VALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF
                     FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL
                     YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATI
                     AIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM
                     FIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLP
                     VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER
                     ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSM
                     NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE"
     gene            complement(2273..2887)
                     /locus_tag="OQQ76_001957"
     CDS             complement(2273..2887)
                     /locus_tag="OQQ76_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMPACT family protein"
                     /protein_id="HCS1968467.1"
                     /translation="MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRA
                     EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRY
                     YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDG
                     KIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE"
     gene            complement(2887..4218)
                     /gene="pepQ"
                     /locus_tag="OQQ76_001958"
     CDS             complement(2887..4218)
                     /gene="pepQ"
                     /locus_tag="OQQ76_001958"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HCS1968468.1"
                     /translation="MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLD
                     DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE
                     DVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRS
                     FKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIV
                     ALNEHASVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKD
                     VNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP
                     HGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIES
                     LLAPWREGQFSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMTRDLKLA"
     gene            4408..6597
                     /gene="fadB"
                     /locus_tag="OQQ76_001959"
     CDS             4408..6597
                     /gene="fadB"
                     /locus_tag="OQQ76_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
                     /protein_id="HCS1968469.1"
                     /translation="MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIG
                     VLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLP
                     VPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGA
                     DSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPK
                     LEPLKLSKIEATMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKS
                     FVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAW
                     KGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDR
                     VDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMH
                     FFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFA
                     GFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQK
                     DYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSE
                     EEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAK
                     YLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPARPVGDLKTA"
     gene            6607..7770
                     /gene="fadA"
                     /locus_tag="OQQ76_001960"
     CDS             6607..7770
                     /gene="fadA"
                     /locus_tag="OQQ76_001960"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HCS1968470.1"
                     /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPA
                     LEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAA
                     RMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGI
                     SREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEA
                     LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCD
                     PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINL
                     NGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV"
     gene            complement(7962..8663)
                     /gene="fre"
                     /locus_tag="OQQ76_001961"
     CDS             complement(7962..8663)
                     /gene="fre"
                     /locus_tag="OQQ76_001961"
                     /EC_number="1.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HCS1968471.1"
                     /translation="MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDER
                     DKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDYQIVVDIPYGEAWLRDDE
                     ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLSELEALSLKHP
                     GLRVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSER
                     NAREDRLFGDAFAFI"
     gene            complement(8709..10202)
                     /gene="ubiD"
                     /locus_tag="OQQ76_001962"
     CDS             complement(8709..10202)
                     /gene="ubiD"
                     /locus_tag="OQQ76_001962"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HCS1968472.1"
                     /translation="MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR
                     AGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPK
                     GFRDLFDKLPQFKQVLNMPTKRLRGVPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
                     WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS
                     VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGY
                     IEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV
                     ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
                     MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK
                     MGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA"
     gene            10369..10857
                     /gene="rfaH"
                     /locus_tag="OQQ76_001963"
     CDS             10369..10857
                     /gene="rfaH"
                     /locus_tag="OQQ76_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription/translation regulatory transformer
                     protein RfaH"
                     /protein_id="HCS1968473.1"
                     /translation="MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT
                     AVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK
                     DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR
                     KL"
     gene            complement(10854..11636)
                     /gene="tatD"
                     /locus_tag="OQQ76_001964"
     CDS             complement(10854..11636)
                     /gene="tatD"
                     /locus_tag="OQQ76_001964"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' ssDNA/RNA exonuclease TatD"
                     /protein_id="HCS1968474.1"
                     /translation="MFDIGVNLTSSQFTKDRDDVVARAFDAGVNGLLITGTNLRESQQ
                     AQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFST
                     PEEQERAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE
                     MQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDFTPKPSS
                     RRNEPAHLHHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF"
     gene            complement(11678..12454)
                     /gene="tatC"
                     /locus_tag="OQQ76_001965"
     CDS             complement(11678..12454)
                     /gene="tatC"
                     /locus_tag="OQQ76_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatC"
                     /protein_id="HCS1968475.1"
                     /translation="MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHL
                     VSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH
                     ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA
                     LFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLL
                     AIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE"
     gene            complement(12457..12972)
                     /gene="tatB"
                     /locus_tag="OQQ76_001966"
     CDS             complement(12457..12972)
                     /gene="tatB"
                     /locus_tag="OQQ76_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HCS1968476.1"
                     /translation="MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLAT
                     TVQNELIQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPE
                     KASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT
                     AAPSPSSSDKP"
     gene            complement(12976..13245)
                     /gene="tatA"
                     /locus_tag="OQQ76_001967"
     CDS             complement(12976..13245)
                     /gene="tatA"
                     /locus_tag="OQQ76_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HCS1968477.1"
                     /translation="MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS
                     DDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV"
     gene            complement(13325..14965)
                     /gene="ubiB"
                     /locus_tag="OQQ76_001968"
     CDS             complement(13325..14965)
                     /gene="ubiB"
                     /locus_tag="OQQ76_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HCS1968478.1"
                     /translation="MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWM
                     PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDG
                     KLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDIL
                     PVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR
                     NFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFF
                     TQVFRDSFFHADMHPGNIFISYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFN
                     RDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR
                     RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAF
                     KEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGAT
                     LVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR"
     gene            complement(14962..15567)
                     /gene="ubiJ"
                     /locus_tag="OQQ76_001969"
     CDS             complement(14962..15567)
                     /gene="ubiJ"
                     /locus_tag="OQQ76_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiJ"
                     /protein_id="HCS1968479.1"
                     /translation="MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGF
                     STSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDI
                     QVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEA
                     ITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK"
     gene            complement(15581..16336)
                     /gene="ubiE"
                     /locus_tag="OQQ76_001970"
     CDS             complement(15581..16336)
                     /gene="ubiE"
                     /locus_tag="OQQ76_001970"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HCS1968480.1"
                     /translation="MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS
                     FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLK
                     MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVL
                     KPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQ
                     DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF"
     gene            complement(16431..17858)
                     /gene="rmuC"
                     /locus_tag="OQQ76_001971"
     CDS             complement(16431..17858)
                     /gene="rmuC"
                     /locus_tag="OQQ76_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HCS1968481.1"
                     /translation="MDFSIMVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAE
                     LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR
                     QMINSEQRLSEQFENLANRIFEHSNCRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF
                     GKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASG
                     LREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTR
                     ESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITE
                     ALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAI
                     GQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEY
                     RLRSVPEQPNDEAYQRDDEYNQQSR"
     gene            complement(17999..18760)
                     /gene="udp"
                     /locus_tag="OQQ76_001972"
     CDS             complement(17999..18760)
                     /gene="udp"
                     /locus_tag="OQQ76_001972"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HCS1968482.1"
                     /translation="MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKL
                     ASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI
                     NVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSD
                     TFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG
                     VIVNRTQQEIPNAETMKQTESQAVKIVVEAARRLL"
     gene            19022..19834
                     /locus_tag="OQQ76_001973"
     CDS             19022..19834
                     /locus_tag="OQQ76_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1968483.1"
                     /translation="MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPA
                     YHARPKQSDGPLPVVIVVQEIFGVHEHIRDICRRLALEGYLAIAPELYFREGDPNDFA
                     DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFCWGGRITWLYAAHN
                     PQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPVLGLYGGQDNSIPQESVETMRQA
                     LRAANAKAEIIVYPDAGHAFNADYRPSYHAESAKDGWQRMLEWFKQYGGKRS"
     gene            20228..20524
                     /gene="hcp"
                     /locus_tag="OQQ76_001974"
                     /pseudo
     CDS             20228..20524
                     /gene="hcp"
                     /locus_tag="OQQ76_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243957.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
BASE COUNT         4987 a         5565 c         5157 g         4815 t
ORIGIN      
        1 ttcgcttttt ctcagcgatg cggggtttgc ataatacgct ttcccgctac agagtcaagc
       61 atttttttgc ttttctctgt tgagattctc aggagaaccc cgctgacccg gcggcgtgtt
      121 tgccgttgtt ccgtgtcagt ggtggcgcat tatagggagt tattccggcc tgacaagagg
      181 aaatttaaaa taactttctg accgcgcatt ttttattctt tatgcttatt tcagcgtcgg
      241 tttgttggtt aactgggcga tttctcgggc gaaattcgcc acctgctccc aatcggtata
      301 gacaacttct ttgcgcgtat ccgtttcacc gcctgacatc ttcataatca gcttaatcat
      361 aaaacggtcg taccagcgat aacgtgggta acgcagcgcc ccggcaatga ccgcgcagcg
      421 atcgggacgc cattgtgaac tcatcagaaa cttgcgcgcg tagctgttgg tctgtggagt
      481 acgcttctcc ggtttgcgcg ccaccaggtt tacggaataa aaggcgctcg gcatcgaatt
      541 cagtcgcgtc gcatgttttt tgacaaattc ctggaacgca gagtggtagt gaccatagcg
      601 aatagaagca ccaatgacca cacggtcata gtttttccat tgtggttctt caatgcggtg
      661 cacattggcg acatccgtct ggatccccag ttctttcagt tccgaagcca ggtaggaggc
      721 aatctcgcgc gtttgtccgt cccttgttga gaaaagaatt aatgttttca cgtattactc
      781 catcattcac gccagaaagt cggggtaaag agcaccagca atgtaaagac ctcgagacga
      841 ccaaacagca tgttggcaat caggatccat ttagccaccg ggttcatact ggtaaagtta
      901 tcagcaacca cgccaagccc tggccccagg ttattcaatg tcgcaacaac tgaggcaaag
      961 gcagaaaaat catccacgcc cgtggcgata atcgccagca tactgacaat aaacaccaat
     1021 gcataggcgg agaaaaatcc ccaaacggct tcgaggatac gttccggcag tgcgcgattc
     1081 cccagcttaa tgctatagac ggcgttcgga tgcaccagtc gtttcagctc acggttcccc
     1141 tgcttaaaca gcagcaggat gcggatcact ttcaggccac cgcccgttga cccggcgcaa
     1201 ccgccgataa aagctgaaca taaaagcagt accggcaaaa agagcggcca gcgggcaatg
     1261 ctgtcagtcg taaacccggc ggttgtcgcc atcgatacca cctggaaaaa cgcctggtta
     1321 attgtcatca gcgccgaact gtagacatta tgaaaccaca gtacgagtgt acaaataacc
     1381 accagcgtaa actgtacgcc gataaacatg cgaaattccg gatcgcgcca ataaaccttc
     1441 agactacgcc cacttaacag tgaaaagtgc agaccgtagt tacaaccgga gatcagcagg
     1501 aagatagcaa tgatagtgtt aatagtcgga ctgtcgaaat aaccgatact ggcatcatgt
     1561 gtcgagaagc cgccaatagc gatagtcgca aagctatggc cgatggcatc aaaggcatcc
     1621 attccggcaa accacaacgc cagcgcacag gcgacggtca gcaagacata aatcaaccac
     1681 agggttttcg ccgtttccgc aattcgcggg cgcattttgt tatctttcag cgggccgggc
     1741 atttctgcgc gatagagctg catcccaccc acgccgagga taggcagtat cgcaaccgct
     1801 aacacgatga tccccatccc gccaaaccat tgcagcatct ggcgataaaa gaggatggca
     1861 tgagggagcg aatccagccc caccagcgta gtggccccgg tggtggtcag gccagagaaa
     1921 gattcaaaaa acgcatcggt aatcgtgagg ttcgggcttt ccgagaagat aaaagggagc
     1981 gcaccgacac tacccagcac ggtccaaaac agcaccacta tcagaaaccc ctcacgggat
     2041 ttcagttcgc ccttctcttt gcggttcggc caccacagca tagagccaat ggcgagggcg
     2101 acaaaaaagg tctgggtaaa agcgcggccc gctccatccc ggtagatgag tgctaccagc
     2161 ccagggataa tcatggtccc tgaaaataag atgaccagta gtccaacgat tcgggtaatg
     2221 gcgcgaaaat gcatctctgc cgcttcctta gttctgcaaa acgaagtggg gattattctt
     2281 caatcgctaa caattgcaat gaaccacggc taaaatccgc cagctttgcg gaaaattcag
     2341 ccactttcgc cgccggaagc gccacccgca gcagaacgaa tgcctgataa tcactgttga
     2401 taattttgcc gtcacactgc cccagcaacg cttcaatgcc ggttaactga ctatattcac
     2461 attgcaaagt atattcggtt aatggcgtct tgcgttgggt cgttagctgg cgcagcgcct
     2521 gattcacgcc gccgccatac gctttcacta acccaccggt gccaagcaat atgccgccgt
     2581 agtagcgcac taccacagcg gtaatttccc cgacgccgct gcccattagc tgggcgagca
     2641 tcggtttacc tgccgttccc gccggctccc cgtcgtcaga gaaacccagc tgttgagaat
     2701 catccggcgc acccgccacc cacgccacgc aatggtggcg ggcatcgggg tgttctgccc
     2761 gcaccgattc aacaaacgct ttcgccgcct caacgccatc ggtatgcgcc aacatcgtta
     2821 tgaagcggct ctttttgatc tcttcaacga ccgtgaccgg tgccgcagga attaaccagc
     2881 tttccatcac gccagtttca gatcccgggt catgttttcc acgttatttt cgtggatcac
     2941 cacgttgtct tcgatacgaa tgccgctgaa cggtttcagt gcttcaattt tctgccagtt
     3001 gaagtgcttg ctgaactgcc cttcacgcca cggtgccagt agcgattcga tgaagtagat
     3061 acccggttcg atggttaaca ccatgcccgg ctggagaata cgggtgcagc gcaggtacgg
     3121 atattttgcc ggtgccgcga ggtgtgtacc gctatcatcc tgcataaaac cggctacgtc
     3181 atgcacctgc aggcccagcg gatggccgat accgtgcggc ataaacggtc cggtgagatc
     3241 gttttcgacc atcgcttctt cactcatatc ggtgatgatt tgatgtttac gcagcaattt
     3301 ggcgatgcgc tgatggaact ggaggtggta atccacatag ctgacgccag ctttcatggt
     3361 ggcgatcagc gcaagttgtt catcatttac gtctttcacc agctgtgcgt agtcgttgtc
     3421 gctttttgcc gaccaggtac gagtcaggtc agccgcatag ccgttatatt cggccccggc
     3481 atccagcagg aagctgcgca tctcttccgg tgcctgatga tccagtttgg tgtaatgcag
     3541 caccgaagcg tgttcgttaa gcgccacaat gttgctgtaa ggtacgtcgg tatcacgatg
     3601 accggtcgcg gtcagatagg cgatgttgat atcgaactcg ctcatgccag aacggaacgc
     3661 ttcttctgcc gcacgatgac cgttgaccgc cattttctgc gcttcacgca tacaggccag
     3721 ttcgtactcg gttttgaagg agcggtagta atgcaggtag tcgatcaccc ctttcgggtt
     3781 gatgttgctg gcctcaatac ccagttgcag cgcacgttcc ggcaccggac cgatataacc
     3841 gatattgccg cgtgcagcgg gcagcaggct accaatgcca tcggctttcg gcagtgcgat
     3901 cacttccaca tcttcagtcc agaaggaggt cggcagcggt tcgacgttgt gccagtaatc
     3961 aaccggcaga tagaaccaca gtttcggctt gttcacgcca tccaccagca accagcagtt
     4021 tggcacctga gttaccggca cccacgcttt gaattgcggg ttcactttaa acggataggg
     4081 atgatcgtcg agaaaaacgt tgaacagctc gccggagtga ataagtaatg catccagctt
     4141 gaagcgcgcc agcgcatcgc gagtccgttc ttgtaaggta gctatatgat ttttatagag
     4201 cgaggccagt gattccattt tttacccttc tgtttttttg accttaagtc tccgcatctt
     4261 agcacatcgt tcatccagag cgtgatttct gccgagcgtg atcagatcgg catttcttta
     4321 atcttttatt tgcatatttt taacacaaaa tacacacttc gatgcatctg gtacgaccag
     4381 atcaccttgc ggattcagga gactgacatg ctttacaaag gcgacaccct gtaccttgac
     4441 tggctggaag atggcattgc cgaactggta tttgatgccc caggttcagt taataaactc
     4501 gacactgcga ccgtcgccag cctcggcgag gccatcggcg tgctggaaca gcaatcagat
     4561 ctaaaagggc tgctgctgcg ttcgaacaaa gcagccttta tcgtcggtgc tgatatcacc
     4621 gaatttttgt ccctgttcct cgttcctgaa gaacagttaa gtcagtggct gcactttgcc
     4681 aatagcgtgt ttaatcgcct ggaagatctg ccggtgccga ccattgctgc cgtcaacggc
     4741 tatgcgctgg gtggtggctg cgaatgcgtg ctggcgaccg attatcgtct ggcgacgccg
     4801 gatctgcgca tcggtctgcc ggaaaccaaa ctgggcatca tgccgggctt tggcggttct
     4861 gtacgtatgc cacgtatgct gggcgctgac agtgcgctgg aaatcattgc cgccggtaaa
     4921 gatgtcggcg cggatcaggc gctgaaaatc ggtctggtgg atggcgtagt caaagcagaa
     4981 aaactggttg aaggcgcaaa ggcggtttta cgccaggcca ttaacggcga cctcgactgg
     5041 aaagcaaaac gtcagccgaa gctggaacca ctaaaactga gcaagattga agccaccatg
     5101 agcttcacca tcgctaaagg gatggtcgca caaacggcgg ggaaacatta tccggcgccc
     5161 atcaccgcag taaaaaccat tgaagctgcg gcccgttttg gtcgtgaaga agcattaaat
     5221 ctggaaaaca aaagctttgt cccgctggcg cacaccaacg aagcccgcgc actggtcggc
     5281 attttcctta acgatcaata tgtaaaaggc aaagcgaaga aactcaccaa agacgttgaa
     5341 acaccgaaac aggccgctgt actgggcgca ggcatcatgg gtggcggcat tgcttaccag
     5401 tctgcgtgga aaggcgtacc ggttgtcatg aaagatatca acgacaagtc gttaaccctc
     5461 ggcatgaccg aagccgcgaa actgctgaac aagcagcttg aacgcggcaa gatcgatggt
     5521 ctgaaactgg ctggcgtgat ctccacgatc cacccaacgc tcgactacgc cgggtttgac
     5581 cgcgtggatg ttgtggtaga agcggttgtc gaaaacccga aagtgaaaaa agccgtactg
     5641 gcagaaaccg aacaaaaagt acgcccggat accgtgctgg cgtctaacac ttcaaccatt
     5701 cctatcagcg aactggccaa cgcgctggaa cgcccggaaa acttctgcgg aatgcacttt
     5761 tttaacccgg tacaccggat gccgttggta gaaattattc gcggcgagaa aagctccgac
     5821 gaaaccatcg cgaaagttgt cgcctgggcg agcaagatgg gcaagacgcc gattgtggtt
     5881 aacgactgcc ccggcttctt tgttaaccgc gtgctgttcc cgtatttcgc cggtttcagc
     5941 cagctgctgc gcgacggcgc agatttccgc aagatcgaca aagtgatgga aaaacagttt
     6001 ggctggccta tgggtccggc atatctgctg gatgtcgtgg gcattgatac cgcgcatcac
     6061 gctcaggctg tcatggcagc aggcttcccg cagcggatgc agaaagatta ccgcgatgcc
     6121 atcgacgcgc tgtttgatgc caaccgcttt ggtcagaaga acggcctcgg tttctggcgt
     6181 tataaagaag acagcaaagg taagccgaag aaagaagaag acgccgccgt tgaagacctg
     6241 ctggcagaag tgagccagcc gaagcgcgat ttcagcgaag aagagattat cgcccgcatg
     6301 atgatcccga tggtcaacga agtggtccgc tgtctggaag agggcattat cgccactccg
     6361 gcggaagcgg atatggcgct ggtctacggc ctgggcttcc ctccgttcca cggcggcgcg
     6421 ttccgctggc tggacaccct cggtagcgca aaatacctcg atatggcaca gcaatatcag
     6481 cacctcggcc cgctgtatga agtgccggaa ggtctgcgta ataaagcgcg tcataacgaa
     6541 ccgtactatc ctccggttga gccagcccgt ccggttggcg acctgaaaac ggcttaagga
     6601 gtcacaatgg aacaggttgt cattgtcgat gcaattcgca ccccgatggg ccgttcgaag
     6661 ggcggtgctt ttcgtaacgt gcgtgcagaa gatctctccg ctcatttaat gcgtagcctg
     6721 ctggcgcgta acccggcgct ggaagcggcg gccctcgacg atatttactg gggttgtgtg
     6781 cagcagacgc tggagcaggg ttttaatatc gcccgtaacg cggcgctgct ggcagaagtg
     6841 ccgcactctg tcccggcggt taccgtcaat cgcttgtgtg gttcatccat gcaggcactg
     6901 catgacgcag cacgaatgat catgactggc gatgcgcagg catgtctggt tggcggcgtg
     6961 gagcatatgg gccatgtgcc aatgagtcac ggcgtcgatt ttcaccccgg cctgagccgc
     7021 aatgtcgcca aagcggcggg catgatgggc ttaacggcag aaatgctggc gcgtatgcac
     7081 ggtatcagcc gtgaaatgca ggatgccttt gccgcgcggt cacacgcccg cgcctgggcc
     7141 gccacgcagt cgggcgcatt taaaaatgaa atcatcccga ccggtggtca cgatgccgac
     7201 ggcgtcctga agcagtttaa ttacgacgag gtgattcgac cggaaactac cgtggaagcc
     7261 ctcgccacgc tgcgtccggc gtttgatcca gtaaacggta cggtaacggc gggcacatct
     7321 tctgcacttt ccgatggcgc agctgccatg ctggtgatga gtgaaagccg cgcccatgaa
     7381 ttaggtctta agccgcgcgc tcgtgtgcgt tcgatggcgg tcgttggttg tgacccatcg
     7441 attatgggtt acggcccggt tccggcctcg aagctggcgc tgaaaaaagc ggggctttct
     7501 gccagcgata tcggcgtgtt tgagatgaac gaagcctttg ccgcgcagat cctgccgtgc
     7561 attaaagatc tcgggctaat ggagcagatt gacgagaaga tcaacctcaa tggtggtgcg
     7621 atcgcgctgg gtcatccgct gggctgttcc ggtgcgcgta tcagcaccac gctgctgaat
     7681 ctgatggaac gcaaagacgt tcagtttggt ctggcgacga tgtgtatcgg tctgggtcag
     7741 ggtattgcga cggtgtttga gcgggtttaa ccacttgccg gatgcggcgt gaacgcctta
     7801 tccggtctac cgatcctgca ccaatgtagg cctgataaga cgcgccagcg tcgcatcagg
     7861 catcgtgcac cgattgccgg atgcgacata gatctaaatg ccactgaata aagttttagt
     7921 tgccgttctt cccgcctgtc aggggcgggt ttttttatat ctcagataaa tgcaaacgca
     7981 tcgccaaaca gacgatcttc ccgcgcatta cgctcactgc aaaacaggtc acgagcaatt
     8041 ttcgccatct caaaacgtcc ggcaatatag atatcatgct ctgccagcgt accatgatcc
     8101 tgcaagaccg ccgttaacac ggtgccagta cgcccacgcc agcccgcttc cggttgttca
     8161 accaccggca ccacacgcag gccaggatgc ttcagcgaaa gcgcctcaag ctcggagaga
     8221 tcataaagat gttgctcctc acgcccaccc cagtaaatgg tgatatcgcg attgggatta
     8281 cgcgccaacg ccgtcaataa aatcgagcgc gcataggaga acccggtgcc gcccgcaatc
     8341 aaaatcatcg gacgctcttc atcatcgcgc agccacgctt ctccgtaggg aatatcgacc
     8401 acgatttgat aatctttgag gatgcggtcc atgactgctt tcgcgtaaag gttgatttca
     8461 gaagcgccaa tatgcagctc tataaaccct ttttcatccg gcgtcgaagc cattgaaaac
     8521 ggacgtttgt cgcgctcatc catcactacc atcaaatact gaccagcacg aaaagaaaag
     8581 gccgcgtctg gcacgatgcg gacacgatat acggtatccg tgatagcttc taccgaggtc
     8641 actttacagc ttaaggttgt catgcgcttt ctctgtcgga tcgataaata gggcaaaaca
     8701 aacgcgcatc aggcgctttt accgttgtta aaaatagcca gttcatccca gatggcgtca
     8761 atatgcgcga caacatctgg atcttttttg atgggacgtc cccattcacg ctgggtttcc
     8821 cccggccatt tattcgtggc atccagcccc atttttgaac ccagcccgga gacaggcgag
     8881 gcaaaatcca gataatcaat aggcgtattt tctaccagaa cagtatcccg cgccgggtcc
     8941 atacgggtgg taatcgccca aatcacatcg ttccagtcgc gtgcgttgac gtcatcatcg
     9001 caaacgatca caaatttagt gtacataaac tggcgtaaga acgaccagac gcccatcatg
     9061 acgcgcttcg cgtgtccggc gtactgtttt ttgatcgtca ctaccgccag acgataagaa
     9121 cagccttccg gcggcaggta aaaatcgaca atttccggga actgtttttg cagaatcggt
     9181 acaaacactt cgttcaacgc cacgcccagt accgcgggct catctggcgg acgcccggta
     9241 taggtggaat ggtaaatcgc atcttcacgc tgggtaatat gcgtcacggt aaataccggg
     9301 aaactatcga cttcgttata gtaaccggtg tggtcgccat acggcccttc cggcgcagtt
     9361 tcgccttgtt cgatataccc ttccagcaca atctccgcac tggcgggcac ttcaaggtca
     9421 ttggagatac acttcaccac ttcggtcttg gtaccgcgca gcaatccggc aaacgcatac
     9481 tctgaaagtg tatccggaac gggggtgact gcaccgagaa tcgtggcggg atcggcaccc
     9541 agcgccacag aaaccgggaa acgttcgccc ggatgcgccg cacaccactc ctgataatcc
     9601 agcgcgccgc cgcgatgcga cagccagcgc ataatcagtt tgtttttacc aatcagctgc
     9661 tggcgataaa tgcccagatt ctgccgctct ttatgcgggc cgcgcgtcac tgtcagcccc
     9721 caggtaatca gcggtgcggc atcttccggc cagcaggtca taatgggaat gcgattgaga
     9781 tcgacgtcat cgccagagac gattttttgt tggcagggca caccacgcag ccgctttgtc
     9841 ggcatgttca atacttgctt aaactgcggc agtttatcaa acaggtcgcg gaaacctttt
     9901 ggcggctccg gctctttcag aaacgccaat aatttaccaa cttcacgcag cgccgaaaca
     9961 tcttcctgtc ccatgcccat cgccacgcgc tttggcgtac cgaacaggtt gcacagcacc
    10021 ggcattgagt agcctttagg gttttcgaac aacagcgcag gcccaccggc acgcaaagtg
    10081 cggtcagcaa tttcagtgat ttccagatgc ggatccaccg ggagcgtgat acgttttagc
    10141 tcaccctgct gttcaagcag cgtcaagaag tcgcgtaaat cgttatattt catggcgtcc
    10201 attgtagcct cttaatctac gcccattata cggcgttcat ctttgcgatg ctgtaaattt
    10261 gttaaattag cgtgaactct gacggtataa cgcaaaccgg ggaatataat taacttagcg
    10321 taaagctttt gctatccttg cgccccgatt aaacggataa gagtcattat gcaatcctgg
    10381 tatttactgt actgcaagcg cgggcaactt caacgtgccc aggaacacct cgaaagacag
    10441 gctgtgaatt gcctggcacc gatgatcacc ctggaaaaaa tcgtgcgtgg aaaacgtact
    10501 gcagtcagtg agccattgtt tcccaactac ctgtttgtcg aatttgatcc agaagtgatt
    10561 cataccacga ctatcaacgc gacccgcggt gtcagccact tcgtgcgctt tggcgcgtcg
    10621 ccagcgatag tcccatcggc ggtgattcat cagctatcgg tatataaacc gaaagacatt
    10681 gtcgatccgg caacccctta tccgggtgat aaggtgatta ttaccgaagg cgcgttcgaa
    10741 ggctttcagg ccattttcac cgaacccgat ggtgaggctc gctccatgct attgcttaat
    10801 cttattaata aagagattaa gcacagtgtg aagaacaccg agttccgcaa actctaaaac
    10861 gcaatcccaa acagtgtttt gacattggca tccgtggtgg cagccagcca tgcggcatct
    10921 tctccacgcc agtgcgcaat acgttgcaaa atatggtgca gatgggctgg ctcgttgcgc
    10981 cgggatgatg gctttggcgt gaaatcgcgc gggagcagat acggcgcatc agtttcgatc
    11041 agcaatttct ccgccggaat caacggcaac aattcccgca gctccagccc gcgtcgttca
    11101 tcgcaaaccc aaccggtaat gccgatataa attccacgcg ccacgcacgc ctgcatctct
    11161 tcgcgtgtgc cggtaaagca atgaagaacc gcaccaggca gtttatccag ccacggctcc
    11221 agcaatgtca taaaccgctc gtgggcatcg cgacagtgca taaataccgg catgtttaat
    11281 tctgcggcaa tgcgtagctg agcaacaaaa gcgcgttcct gctcttccgg cgtcgaaaag
    11341 ttgcggttaa agtcgagacc acattcacca atcgccacca cttctggctg cgcggccagc
    11401 tcaataatcg cttcttcagt cgcagcttgc cactggctgc tgtcgtgagg atgtacgccc
    11461 gccgttgacc aacaggacga atactgacgc gccagctttt gcgcctgctg gctttcacgc
    11521 aggttagtgc cggtgatgag tagcccatta actcccgcgt caaaagcgcg cgctacaaca
    11581 tcatcacggt ctttcgtaaa ttgcgaactg gtcaaattaa cgccgatatc aaacatcctg
    11641 tactccatat gacaaccgcc ctgacgggcg gttgaattta ttcttcagtt ttttcgcttt
    11701 ctgcttcagc gtcgttttcc tcttcccgat ttcgcccttt accaacgtaa aagcgtgaga
    11761 agaagacacc gatttcaaac agacagtaca tcgggatcgc caatagcgtt tgcgagaaga
    11821 catccggcgg cgtcagcaac atcccgacaa cgaatgcacc aaccagcaca tacgggcgtt
    11881 ttttgcgtaa gtcttctggc gaggtaatcc ccatccagca cagcagcaca attgccaccg
    11941 gcacttcaaa ggagacacca aacgccataa acagcgccat aacgaagctt aaatagctgg
    12001 cgatgtcggt ggatacctgc accccttccg gcgcggtatt ggcaaggaag ccaaatgcca
    12061 gcggaaagac cacaaagtag gcgaatgcca tgccgatata aaacagcaga gagctggaaa
    12121 ccagcagcgg caccaccagg cgacgttcat gcttatacag cgctggggcg ataaatgccc
    12181 acacctgata gagaatcacc ggcgctgaca gaatcagcga caccataaag gtcagcttga
    12241 tcggcgtaaa gaacggcgag gccacgtcgg tggcgatcat cgttgaacct tgcggcaact
    12301 gcttgatcaa tggcgcggat accaggtgat agatgtcatt ggcgaaatag accagacaca
    12361 ggaatatcac gatcaccgcg ataatgcagt tcagcagacg cttacgcagc tcaattagat
    12421 gcgtgataag cggttgagta tcttctacag acatgtttac ggtttatcac tcgacgaagg
    12481 ggaaggtgca gcggttttcg gttcagcgtc cgcagcaggt tttaccaccg gctctggcgt
    12541 ggtttctggc ttctgttccg gcgaactggc ctgcgtttgt gcagcggcag gcgttacgcc
    12601 ctcatgcgca gcttcattat ctttcaccac cgggttatgg atggtgtgcg cttcatcgct
    12661 cgccttttct ggatcgtttg caacgtagga acgcttcatc gactccgcgg cctggcgtag
    12721 ttcatccatc gacgctttca gttcgggcgt caggttagtg aggctcgcct tttcaacctt
    12781 tttcagactg tcctgaaact cctggagttt taactcctgg atcagttcgt tctgcaccgt
    12841 tgtcgccagt gaacgcaacg cgcgaatcca gcccgctacc gtttttaccg ccacaggcag
    12901 tcgttgcggc cccagaacga cgaggccgat gatgaacacc aatagcagtt cgctaaaacc
    12961 gatatcaaac acggattaca cctgctcttt atcgtggcgc ttcgcgtctt ctgttttagc
    13021 ctgttcctga ttcgtatccg cctgcttatc ggcgatagtt ttcgcagtaa aatcagcatc
    13081 ctgactggtt ttatcctgct ttggttcatc atcgctcatt gcttttttaa agcctttgat
    13141 cgacgcacca agatcggaac cgatggagcc gagctttttg gtgccaaaaa gcagtacaac
    13201 gatgacggca ataatcaata actgccaaat actgatacca cccatacatg ttcctctgtg
    13261 gtagatgatg attaaacaaa gccgcattat acgttacacg gccccgcctt gagcgatgaa
    13321 aaaatcagcg tgttttgcgc caaccgacaa accaggcgat cagaccacct gccattaacc
    13381 agccgggcat cagcccccac tcaggtcggc tgaccaacaa gaatgtgcca cttaatacta
    13441 acgtagcgcc aattccgaga aaataacgcg attgtccctg acgtacatga tttgactgaa
    13501 gctcgcgggc aatcttatca acactgtgct gtaaatactt gccctggcgc aaactgtcgt
    13561 aaaccaattc aggcagttct ggcatttttt cgacccagaa cggcgctttt tctttaaatg
    13621 ctctcaccag cgcaggaata ccgacctgat ctttaatcca cgactccagg aaaggcttcg
    13681 ctgttttcca taaatcgagc tgcggataaa gctggcgtcc taccccttcg acatagagca
    13741 gggttttctg gagtaacacc agttgcggct gcacttccat attgaagcga cgcgccgtat
    13801 taaacagatt taacagtaca tgtccaaacg aaatttcggc cagcggtttc tcaaagatag
    13861 gttcacagac cgtacgaatg gcaaattcga actcttcaac gttggtatct ggtggcaccc
    13921 agcctgaatc gacgtgtagc tctgccactt tgcgatagtc gcgattaaag aaggcgataa
    13981 agttttctgc cagatagcgt ttatcttctt tgtttagcga gccaacaatc ccgcaatcaa
    14041 tgccgatata tttcgggttt tccgggtgtt catagcttat gaagatgttg ccagggtgca
    14101 tatcggcatg gaaaaagctg tcgcgaaaga cctgagtgaa gaacacctgc acgccgcgtt
    14161 ccgccagcaa tttcatgtta gtgccgtttt tctccagcgc cgcaacatca gacaccggaa
    14221 tgccgtaaat gcgctccatc accatcatcc cttcactaca atagtcaggg taaacttccg
    14281 ggatgtagag catcgggctg tcttcaaaat tgcgccgaag ctgaatggcg ttggcagatt
    14341 cccgcagcaa attcagttca tcaatcaagg tcttttcgta ctcgcgcacc acttcggttg
    14401 ggcgcagacg gcgaccatcc ggcagcaaac gcggcaccca gcgagccaga cggtagataa
    14461 gtttcagatc cgctttaatg accggcaaaa tatccgggcg gatgacttta atcaccacct
    14521 ctttaccatt cgatttcaat cgcgcggtat gaacctgggc gatagaagca gaagccagcg
    14581 gcttgatttc aaaatcgtca aaccacgctt ctaccggcaa gccgcccatt gcagcttcaa
    14641 tctgctgctt cgccagcttg ccatcaaacg gagcaacttt gtcctgcaat aacgccagct
    14701 gatcggcaat atgcggtgga aaaagatcgc ggcgggttga taacatttgc ccgaacttga
    14761 tccaaaccgg ccccagttct tgcagggcca gtcgtagtcg ctcacctaaa agtttgtctt
    14821 tatgccgatt tggcatccag aataatgagt atcgccatag ccgtagcggc agggtgatac
    14881 gcattttggg gatcagttca tcaagtccgt agcttaaaaa agtgcgaatg atgaaatata
    14941 ggcgccgtac ttcacctggc gtcatttagc ctccagtttt tccagccgtt tggtcagggc
    15001 atcaacagca cgctcgacgg cagccgtctc ttccgcaaac caggccactt caagcggacc
    15061 gggtgccata cgccactctt cagtaatggc ttccgccaca taacgttgct ggcgcttaat
    15121 gccgtgatgc aggaactttg cgcctccgcg catggctttg ctgattcctt cagcggcgat
    15181 atcaccggta taaggggcca gcagttccgc agggtcgaac tctgccagat ctgccagcgc
    15241 aacgaagttt tgcaccacct gaatatcgcc ctgcacttcc agctcaccac tgcgaatcag
    15301 tgcggtaagc tgctggcgat cgcgaagttt cggcaacaca ctggcgtagg cgataacggt
    15361 gcagtcagca tcgcctgccc attcgcccag tacatcaacc tggcgttcgc tgaacaccag
    15421 aatcaatgac gtcgaaaagc cttttacctc cacgcgcaat actttaccca gcagacgcga
    15481 gcgggctgtt ttcagcgcgg gtgagcgata caggaaggtg ttgagcagac tttcaattcc
    15541 tgccgtcact aaaggtttaa aaggcatttc cggtctcctg tcagaactta taaccacgat
    15601 gcagcgccac aacccctgcc gtcagattgt agtagtcgac actttcgaat ccggcatcct
    15661 gcatcatggc tttcagggta tcctgatcgg gatgcatacg gatggattct gccagataac
    15721 ggtagctgtc ggcgtcgttc gcgaccagtg agccaatacg cggcagcaca tggaaggagt
    15781 atgcatcata ggctttgctc agcggctcga taattggctt cgagaactca agcaccagca
    15841 ggcggccgcc gggtttcagc acgcgataca ttgaacgcag tgctttatct ttgtcggtga
    15901 cgttacgcag accaaacgaa atggtgatgc aatcaaaggt gttatccggg aacggcagcg
    15961 cctcagcgtt cgcctgaaca tactcaacgt tgccaatcac accgatatta cgcagcttct
    16021 cgcgtcccat tttgagcatg gattcattga tatcagcaag gaccactttg ccagtttctc
    16081 cgaccaggcg ggagaatttc gctgtcaggt cgccggtgcc accagccaga tccagcacgg
    16141 tctgcccacg gcgtacgccg ctgcaatcaa tcgtgaatcg cttccacaaa cgatgaatac
    16201 caaatgacat caaatcattc atgacatcgt attttgatgc cacggaatgg aaaacgtggg
    16261 cgaccatatc cgctttttgt tccttcgcga cggtctgaaa accaaagtgc gtcgtttctt
    16321 gtgacttatc caccatctca atgcctgctc atcaaaaaat tgttccagaa gtgtaacaga
    16381 ttgggcgtcg atgccctaga tttctacccg gcttaactac ccctaatggg ctagcgcgac
    16441 tgctgattat attcatcatc gcgttgataa gcttcatcat tcggctgctc cggaaccgac
    16501 cgaagtcgat actcttcatc ctggctcacc gcctgttcag ccaaatccgg attaatctcg
    16561 cgtttaattt ctactcctaa accgcgaaac gcttctgcct gcgccagcac atttccgcga
    16621 cctgaagaga gttttttcat tgcctggcgg tagttatcct gcgctttgtc gagactttga
    16681 ccaatcgcgg acatgtcatc gatgaacaaa cgcatcttgt cgtacagctt gctggcacga
    16741 tcggcgattt gctgggcgtt gcggctttga tgctcataac gccacaggtt ggcaatagta
    16801 cgcaacgcca ccagcagcgt agtcgggcta accagcatga tattgttttt caacgcttcg
    16861 gtgatcagct ccggctggcg gtcaagcgcc agtaaaaaag cgggttcaac gggaataaac
    16921 atcagcacgt aatccagagt tcgcagcccc ggcagctgtt gataatcttt gcgtcccagc
    16981 aaacggatat ggttacgcac cgacgcgata tgttcctgta gcgcgctttc gcgggtgtag
    17041 tcgtcttcgg cgttaaaata gcgttcatag gcgaccagcg tcattttggc gtcgatcacc
    17101 acatcttttc cctgcggcag ccgcacgatg acatccggct gcatccgcga gcgggcgtca
    17161 ttttcgatgc tgacctgggt ttcatattca tacccttcac gcagaccgga agcctccaac
    17221 acccgcgtca atactacctc gccccagttg ccctgggttt tattgtcgcc tttcagcgcg
    17281 cgcgtcaggt tgatcgcttc ctgggccatt tgcgcgttga gttgctggag attgcgaatt
    17341 tcgtgggtca gggtatggcg ttcttgtgct tctttaccga agctgtcctg aacctgacgg
    17401 cggaaaccgt ccagttgttc acgtagcggc gacaacaggc tgttcagact ctgacggttt
    17461 tgctcatcaa cccggcaatt gctgtgctca aaaatacggt tggcgaggtt ttcaaactgc
    17521 tcactgaggc gctgctcgct gttaatcatc tggcgaattt tatcgtcagc atgttgctgt
    17581 gcggcttcca tccgcgtggt tacttcacgc agatcggcct ccagagaggt gttaatactt
    17641 tgcaggctgc gcacttcgtt attgagtaac tcgcactctg cacgccagtg ctcgctttgg
    17701 gtaatttgtt gttttgccgc gcttaactcc gcgaccatct cttcacgttc agctaattgc
    17761 tcggcttttt gctgcgcatg ttgataactg gcaaacagcc agccaattgc cacacccacc
    17821 aacgcaataa ctgcgtaaac catgattgag aaatccacaa cgcctcctga cgcaacaact
    17881 tacccgcaca aaatagaatt gtgctgtaca aacgtccagt tggaaaggca tttcctgcga
    17941 ggcgctacgc aaaaatacaa aaggccgaac gcgtcggcct tcagacagga gaagagaatt
    18001 acagcagacg acgcgccgct tccaccacga ttttcaccgc ttggctttca gtttgtttca
    18061 tcgtctcagc attcgggatc tcttgctggg tgcggttaac gataacaccc gctaccatac
    18121 cggcacgcag gccctgactt gcacacatgg tcagcagggt tgcagattcc atttcatagt
    18181 tcattacgcc catcgcctgc cactcttcca tagaaccttt aaagtgacga actacgcgac
    18241 cagagtaagt atcgtaacgt tcctggcctg ggtagaaggt atcagaagaa gctgtcacgc
    18301 caacgtgagt tgtcgcgcca atggatttcg cagcttcaac cagcgcagtc gtacattcga
    18361 aatcagcgac agccgggaat tccagcggtg cgaagtgcag gctcgcgcca tccagacgga
    18421 cagacgccgt ggtaaccagg acatcaccca cattaatatg cggctgaata gcgcccgttg
    18481 taccgatacg caggaaggtg cgaatgccca gctgtgccag ctcttcaaca gcaatagagg
    18541 tagacgggcc gccgataccg gtagagcaga cgataacagg tttaccatcc agctctgcac
    18601 gccaggtggt gaattcgcgg tgagatgcca gcttaaccgg cttatccatc agcgcggcga
    18661 tcttttccac acgatccggg tcgccaggga cgatggcaag cgtagcccct tgtaaatcgt
    18721 ttttagtgag gccgagatga aaaacatcag acttggacat atacaactcc tctgtgaatc
    18781 ggtttagtca gaagaagcaa aaagacactt taccgaaggg tttaacattt tttcgtgata
    18841 ctcatcacca tgacgcaaat gcgttgcata aatttaccca ccaaaagtga tgcaaatcac
    18901 ataaatcact cttcattctg caggactgca taaaagatga gccgattcag gcaatgtgat
    18961 ttgttgcatg ctgactatag ttaacattgc gcaacatttt tataagggta cggagaatac
    19021 catggcaaca acacaacaat ctggatttgc acctgctgca tcgcctctcg cttcgaccat
    19081 cgttcagacc ccggacgacg cgattgtggc gggcttcacc tctatccctt cacaagggga
    19141 taacatgcct gcttaccatg ccagaccaaa gcaaagcgat ggcccactgc cagtggtcat
    19201 tgtagtgcag gaaatttttg gcgtgcatga acatatccgc gacatttgtc gccgtctggc
    19261 gctggagggg tatctggcta tcgcacctga actttacttc cgcgaaggcg atccgaatga
    19321 ttttgccgat atccccacgt tgcttagcgg tctggtagca aaagtgcctg actcgcaggt
    19381 gctggccgat ctcgatcatg tcgccagttg ggcttcccgc aacggcggcg atgttcatcg
    19441 tttaatgatc accggattct gctggggtgg acgtatcacc tggctgtatg ccgcgcataa
    19501 tccacagcta aaagccgcag tggcgtggta cggcaaactg acgggcgaca agtcgctgaa
    19561 ttcaccgaaa caacctgttg atatcgcaac cgatcttaac gcgccggttc tcggcttata
    19621 tggtggtcag gataacagca ttccgcagga gagcgttgaa accatgcgcc aggcgctgcg
    19681 ggctgctaat gcgaaagcag agattatcgt gtacccggac gccgggcatg cattcaacgc
    19741 tgattatcgc ccgagctatc atgccgaatc tgcgaaagat ggctggcagc gtatgctgga
    19801 atggtttaag cagtatggtg ggaagcggag ttagtttcct cttagtctat atttgagatg
    19861 gtgagtgaac gagtgcgttt tgctgccatc tctgtccccc aaaaaataat cagtatgaat
    19921 tgattggaga ttacgactcc gctatttgac cttaagaaag tcggcaagtc atagtcataa
    19981 atgagtctct tcaatggaag acaccttaga gatttaccat ctactcccat tcacaaacaa
    20041 acattaatta ttatcaacac attcacatta attataaatc atctcagacc ttcctgataa
    20101 aaagatatta aagtgaaaca ttttgttttt cacattttag ttcatcactt ttaggcgtaa
    20161 ataaaggtaa aaaaaacaac aatactattt ctctttcaca aaagaattaa caaaaggttt
    20221 tttaaggatg agtgatatta tttacttgac cataaccgga gaacaacaag gatgtatttc
    20281 ctctctttgt ggaacgagcg catcaatagg taatcgctgg cagattggcc atgaagatga
    20341 aatcttcgcg ttctcgctct ctaatagtat tacgaatgca ggcaaagggt cacaattgca
    20401 tggccttagt ttctgtaaat tcttattaac gctattaaca ataacgagca gttgttcatg
    20461 gcgtttgact tctatcggat caatagattt ggtcgatggg agaaatatta caacattcaa
    20521 ctcc
//
LOCUS       DAJVUN010000065        19927 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.065, whole genome shotgun sequence.
ACCESSION   DAJVUN010000065 DAJVUN010000000
VERSION     DAJVUN010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19927
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.065"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            92..184
                     /locus_tag="OQQ76_001975"
     CDS             92..184
                     /locus_tag="OQQ76_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001441976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HCS1968484.1"
                     /translation="MNDLPVRQTPMFTLLREAGFSSSPQGLDWG"
     gene            complement(235..582)
                     /gene="grxD"
                     /locus_tag="OQQ76_001976"
     CDS             complement(235..582)
                     /gene="grxD"
                     /locus_tag="OQQ76_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin 4"
                     /protein_id="HCS1968485.1"
                     /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG
                     ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE
                     TAAKYKSEEPDAE"
     gene            916..1731
                     /gene="mepH"
                     /locus_tag="OQQ76_001977"
     CDS             916..1731
                     /gene="mepH"
                     /locus_tag="OQQ76_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-endopeptidase MepH"
                     /protein_id="HCS1968486.1"
                     /translation="MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKA
                     DKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASA
                     SFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGG
                     SSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQG
                     RGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR"
     gene            1859..2440
                     /gene="sodB"
                     /locus_tag="OQQ76_001978"
     CDS             1859..2440
                     /gene="sodB"
                     /locus_tag="OQQ76_001978"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HCS1968487.1"
                     /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK
                     GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG
                     SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE
                     HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA"
     gene            complement(2586..3755)
                     /locus_tag="OQQ76_001979"
     CDS             complement(2586..3755)
                     /locus_tag="OQQ76_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1968488.1"
                     /translation="MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGM
                     LISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRIL
                     TSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRM
                     SFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMF
                     TLYTYIYPVLQSITHATPVFVTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGFLLLL
                     MVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAF
                     NLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS"
     gene            complement(3921..4010)
                     /gene="ynhF"
                     /locus_tag="OQQ76_001980"
     CDS             complement(3921..4010)
                     /gene="ynhF"
                     /locus_tag="OQQ76_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein YnhF"
                     /protein_id="HCS1968489.1"
                     /translation="MSTDLKFSLVTTIIVLGLIVAVGLTAALH"
     gene            4309..5334
                     /gene="purR"
                     /locus_tag="OQQ76_001981"
     CDS             4309..5334
                     /gene="purR"
                     /locus_tag="OQQ76_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HCS1968490.1"
                     /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH
                     YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE
                     KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID
                     NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ
                     GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN
                     VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG
                     PFRDYRR"
     gene            complement(5331..6263)
                     /locus_tag="OQQ76_001982"
     CDS             complement(5331..6263)
                     /locus_tag="OQQ76_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1968491.1"
                     /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL
                     AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV
                     RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF
                     RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR
                     VVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND
                     MSPALTWLLEYLGDSETLNKEWLREPEETPATGD"
     gene            6376..7587
                     /locus_tag="OQQ76_001983"
     CDS             6376..7587
                     /locus_tag="OQQ76_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HCS1968492.1"
                     /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS
                     ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF
                     VQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQ
                     AIFATLFAITVVLILPIFWLKPTTKAGNNSQDGLTFTDLLRSKTYRGNVLIYAACSAS
                     FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV
                     LFAVSVIATWTAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA
                     LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEAGCQNH
                     GNAEVAHSESH"
     gene            7878..9026
                     /gene="cfa"
                     /locus_tag="OQQ76_001984"
     CDS             7878..9026
                     /gene="cfa"
                     /locus_tag="OQQ76_001984"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HCS1968493.1"
                     /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP
                     DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR
                     LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC
                     EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSMVGVTISAEQQKMAQERCEGLDVTIL
                     LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN
                     VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE
                     IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR"
     gene            complement(9066..9707)
                     /gene="ribE"
                     /locus_tag="OQQ76_001985"
     CDS             complement(9066..9707)
                     /gene="ribE"
                     /locus_tag="OQQ76_001985"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HCS1968494.1"
                     /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH
                     NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH
                     IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH
                     LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA"
     gene            9922..11295
                     /gene="mdtK"
                     /locus_tag="OQQ76_001986"
     CDS             9922..11295
                     /gene="mdtK"
                     /locus_tag="OQQ76_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MdtK"
                     /protein_id="HCS1968495.1"
                     /translation="MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDM
                     AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLI
                     MLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
                     MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSM
                     RDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI
                     ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAAQTGLMVGVCMATLTAIFTV
                     SLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITF
                     TAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVI
                     ILQRASR"
     gene            complement(11336..12592)
                     /locus_tag="OQQ76_001987"
     CDS             complement(11336..12592)
                     /locus_tag="OQQ76_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
                     /protein_id="HCS1968496.1"
                     /translation="MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENT
                     VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH
                     PEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
                     LLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT
                     DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA
                     PVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINL
                     NGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITD
                     ASRQTLCNALKLQPDEDGIGATLQPA"
     gene            12900..12976
                     /locus_tag="OQQ76_001988"
     tRNA            12900..12976
                     /locus_tag="OQQ76_001988"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12934..12936,aa:Val,seq:gac)
     gene            12981..13057
                     /locus_tag="OQQ76_001989"
     tRNA            12981..13057
                     /locus_tag="OQQ76_001989"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13015..13017,aa:Val,seq:gac)
     gene            13165..13470
                     /locus_tag="OQQ76_001990"
     CDS             13165..13470
                     /locus_tag="OQQ76_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HCS1968497.1"
                     /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES
                     EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA"
     gene            13596..15200
                     /locus_tag="OQQ76_001991"
                     /pseudo
     CDS             13596..15200
                     /locus_tag="OQQ76_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416183.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-NAD(P)-binding protein"
     gene            complement(15212..16024)
                     /locus_tag="OQQ76_001992"
     CDS             complement(15212..16024)
                     /locus_tag="OQQ76_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968498.1"
                     /translation="MIITRADLREWRIVAVMYRWFLRHFRRGGSYADIHHALIEEGYT
                     DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCED
                     NARIAIAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI
                     ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG
                     VVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC"
     gene            complement(16028..16813)
                     /locus_tag="OQQ76_001993"
     CDS             complement(16028..16813)
                     /locus_tag="OQQ76_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase cytochrome B subunit"
                     /protein_id="HCS1968499.1"
                     /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL
                     GLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT
                     AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI
                     MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW
                     LLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH"
     gene            complement(16810..17478)
                     /locus_tag="OQQ76_001994"
     CDS             complement(16810..17478)
                     /locus_tag="OQQ76_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HCS1968500.1"
                     /translation="MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDES
                     RCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCID
                     VCPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
                     KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIK
                     KENV"
     gene            complement(17542..18180)
                     /locus_tag="OQQ76_001995"
     CDS             complement(17542..18180)
                     /locus_tag="OQQ76_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707570.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdhW family putative oxidoreductase system
                     protein"
                     /protein_id="HCS1968501.1"
                     /translation="MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAE
                     FIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYS
                     TQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEA
                     AIAAMDVAPEYADIRQVESSTAELYLFSERFMTYGKAYGLCEWFEVEQFQNP"
     gene            complement(18193..19927)
                     /locus_tag="OQQ76_001996"
                     /pseudo
     CDS             complement(18193..19927)
                     /locus_tag="OQQ76_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246021.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde ferredoxin oxidoreductase"
BASE COUNT         4938 a         5208 c         4693 g         5088 t
ORIGIN      
        1 acaaaaagag gaattactcg ccccagaggt tttccacgcg ctgactaccg cactgcgtcg
       61 cgaaccacgg ctgcgcttta cgctaacaga agtgaatgat ctaccggtcc ggcaaacgcc
      121 gatgtttacg ctgctgcgtg aggcgggatt ttcaagttcg ccacaagggc tggattgggg
      181 atagagaaag gactgacgga tgcccgttcg catccgtcag tattgcagga cggattattc
      241 cgcgtccggc tcttcagact tgtatttagc ggcagtttct ttgatcagct gctgcagttc
      301 gccacgctga tacatttcga tcacgatatc acaaccgccg accagctcgc cgtcaaccca
      361 cagttgcggg aaggtcggcc agttagcata tttcggcagt tccgcacgaa tgtccggatt
      421 ctgcagaata tcaacatagg caaaacgttc gccacatgcg gcaagcgcct ggactgcctg
      481 ggcagagaaa ccgcagctcg gcagtttcgg tgaacctttc atgtacagca ggatcgggtt
      541 ttcagcaatc tggcgttgga ttttttcgat agtggtgctc attgtcttgc ttcctcaaac
      601 ttctttacgg cagtaatctg acattgtagc gggtcagtgc ggcatcggaa aataacattt
      661 tcatcacgct tttgctattt tatccctttg ctctatttgt tgcatttcaa atattcgttt
      721 cttctctgat gccggcaaac tggcgtattt ataaccattt ttagctttca ctgctgcatt
      781 tttttgcgct cgccaacgaa acgtattttt taacaataaa agctattaac tttctcttct
      841 tctatgcatt agaatcatca agttttgtaa atcagacgca ggcatgatag acctgcctta
      901 acagagggac gctcagtggc gcggataaac cgtatttcga tcacgctctg tgctttactt
      961 tttaccaccc tgcctttaac gcctatggcc catgcttcaa agcaagccag ggagagttct
     1021 gctaccactc atatcaccaa aaaagcagat aaaaagaaaa gcacggcaac caccaaaaag
     1081 acccagaaaa cagcgaaaaa agccgccagt aaaagtacga ccaaaagcaa aaccgcttct
     1141 tccgttaaaa aatcttccat taccgcttct aaaaacgcca aaactcgcag caaacacgcc
     1201 gtcaataaaa cggcctcagc cagctttacc gaaaagtgta ccaaacgtaa gggctataaa
     1261 tcgcattgtg tgaaagtcaa aaatgccgcg tcaggaactc ttgccgacgc gcacaaagcg
     1321 aaggtgcaaa aagctacgaa agtggcaatg aataaactga tgcagcaaat tggtaagcca
     1381 tatcgttggg gtggcagctc accgcgtacc ggttttgatt gcagcggcct ggtttattac
     1441 gcttataaag atttggtgaa aattcgtatt ccgcgtacgg cgaatgaaat gtatcacctg
     1501 cgtgatgcag cgccaatcga acgtagtgaa ctgaaaaacg gcgacctggt ctttttccga
     1561 actcagggac gcggcacagc cgatcatgtc ggcgtgtatg tcggcaacgg caaatttatt
     1621 cagtcaccgc gcacaggtca ggaaattcaa atcacttctc tcagtgaaga ctactggcag
     1681 cgccactatg ttggcgctcg tcgggtaatg accccaaaaa cacttcgcta aaactttacc
     1741 ctgttgttac ggcaacaggg taagttcatc ttttgtctca ccttttaatt tgctacccta
     1801 tccatacgca caataaggct attgtacgta tgcaaattaa taataaagga gagtagcaat
     1861 gtcattcgaa ttacctgcac taccatatgc taaagatgct ctggcaccgc acatttctgc
     1921 ggaaactatc gagtatcact acggcaagca tcatcagact tatgtcacta acctgaacaa
     1981 cctgattaaa ggtaccgcgt ttgaaggtaa atcactggaa gagattattc gcagctctga
     2041 aggtggcgta ttcaacaacg cagctcaggt ctggaaccat actttctact ggaactgcct
     2101 ggcaccgaac gccggtggcg aaccgactgg aaaagtcgct gaagctatcg ccgcatcttt
     2161 tggcagcttt gccgatttca aagcgcagtt tactgatgca gcgatcaaaa actttggttc
     2221 tggctggacc tggctggtga aaaacagcga tggcaaactg gctatcgttt caacctctaa
     2281 cgcgggtact ccgctgacca ccgatgcgac tccgctgctg accgttgatg tctgggaaca
     2341 cgcttattac atcgactatc gcaatgcacg tcctggctat ctggagcact tctgggcgct
     2401 ggtgaactgg gaattcgtag cgaaaaatct cgctgcataa taactgatgg caaatgcagc
     2461 attgcctgat gcgcttcgtt taccatgcca acgcggatga ggcgttaaca gcgcattcgg
     2521 caagataaat cgcacgttgt cagcaactgt aacgcagaag gttatccttc tgcgtttttg
     2581 tttaattagc tgttagcaac gcaaactgtt tcaggttgtt ttctggctga cataaacacc
     2641 agcaataatg ccagtcccgc gacaatcgct cccatcaccg gcacaaagct gtatcccagc
     2701 ccagcggaaa ttaccgcacc accagcagct gctcccagcg catttccaag attaaaggca
     2761 ccaatattga ctgatgaaga cagacctggc gcttcactgg cgacacgcat cacgcgcatc
     2821 tgtaacggcg gtacgaccgc aaaggttgct gcgccccaca ccaccatgct aatagctgcg
     2881 ccgaactcat tgcgggccag gaacgggatt gccagcataa tcaccatcaa caacaacaaa
     2941 aagcctttca acgtgccgtt aactgaacga tctgccagtt tgccgccggg atagttaccg
     3001 atagagaatc cgacaccaat cagcaccagc attgccgtga cgaacaccgg tgttgcgtgg
     3061 gtaatacttt gcagtaccgg atagatatag gtgtagagag taaacattgc accagctccc
     3121 agtaccgtcg tcagcaatgc agacagcacc tgcggacgca ttaataccgc cagctctttt
     3181 ttcacttcag gtcgtgcccc tgcaccacct ttaggtaatg agaagaacag acttaccatt
     3241 gaaatcactc ccagccccgc cgttgccaga aatgacatcc gccagccgat ggtttcaccc
     3301 aaccaggtcg ccgccggcac gccaccgata tttgccaggg ttaaccccat aaacatagtg
     3361 gcaactgcgc tggcctgttt atgttttggc tccacgcttg cggccacgac tgaacccaaa
     3421 ccaaaaaatg ctccgtgatt caggctggtc aaaatgcgtg aaagcatcag ggtcatataa
     3481 tccggcgcga tggcggaaag tacgttgccg agcgtgaaaa ttgccatcag gaaaatcaac
     3541 gcactgcggc gggcacgatg agaaagtaga agcgtcatca gcggcgcgcc aaccattacg
     3601 ccaactgcat aggcactgat taacattccg gcagcgggaa tcgagacatc cacaccgcgc
     3661 gcaatgacgg gcaacaagcc cattggcgag aactccgttg tcccgatacc aaacgcgcca
     3721 atcgccagcg ccagcaacgg atagttaatt ttcatgcctt atctccacct cttcgcgtca
     3781 ttacgcgata ttcattaaag tggcgaaagc atgacagcaa tcacaaaaaa atgaaaataa
     3841 caaaaagaga aaacactttt gccattttgc taacaaacag gaaggagatg cgagggagaa
     3901 cgcgctccct cgagaggaaa tcagtgcagc gcggcagtca aacccacggc cacgatcaaa
     3961 ccgaggacga taatcgttgt taccagtgaa aatttaaggt cggtgctcat caagttttct
     4021 ccttttttat taccacacaa atagtgatat tacgcatttt tacacactgt gatgaaaaaa
     4081 tctcccgtca tttataatga taagtgtttt taccacttcc ccttttcgtc aagatcggcc
     4141 aaaattccac gcttacacta tttgcgtact ggccattgac cccttcctga cgctccgtgt
     4201 cgtttttccg gcgtaccgca acacttttgt tgtgcgtaag gtgtgtaaag gcaaacgttt
     4261 accttgcgat tttgcaggag ctgaagttag ggtctggagt gaaatggaat ggcaacaata
     4321 aaagatgtag cgaaacgagc aaacgtttcc actacaactg tgtcacacgt aatcaacaaa
     4381 acacgtttcg tcgctgaaga aacgcgcaac gccgtgtggg cagcgattaa agaattacac
     4441 tactccccta gcgcggtggc gcgtagcctg aaggttaacc acaccaagtc tatcggtttg
     4501 ctggcgacca gcagcgaagc ggcctatttt gccgagatca ttgaagcggt tgaaaaaaat
     4561 tgcttccaga aaggttacac cctgattctg ggtaatgcgt ggaacaatct tgagaaacag
     4621 cgggcttatc tgtcgatgat ggcgcaaaaa cgcgtcgatg gtctgctggt gatgtgttct
     4681 gagtacccag agccgttgct ggcgatgctg gaagagtatc gccatatccc aatggtggtg
     4741 atggactggg gtgaagcaaa agctgacttc accgatgcgg tcattgataa cgcgttcgaa
     4801 ggcggctaca tggccgggcg ttatctgatt gaacgcggtc accgcgaaat cggcgtcatc
     4861 cccggcccgc tggaacgtaa caccggcgca ggccgccttg ccggttttat gaaggcgatg
     4921 gaagaagcga tgatcaaggt gccggaaagc tggattgttc agggtgactt tgaacccgaa
     4981 tctggttatc gcgccatgca gcaaatactg tcgcagccgc atcgccctac tgccgtcttc
     5041 tgtggtggcg atatcatggc aatgggcgca ctttgtgctg ctgatgaaat gggtctgcgc
     5101 gtcccgcagg atgtttcgct gatcggttat gataacgtgc gcaacgcccg ctattttacg
     5161 ccggcgctga ccacgatcca ccagccaaaa gattcgctgg gtgaaacagc gttcaacatg
     5221 ctgttggatc gtatcgtcaa caaacgtgaa gaaccgcagt ctattgaagt gcatccgcgc
     5281 ttgattgaac gccgctccgt ggctgacggc ccgttccgcg actatcgtcg ttaatcaccc
     5341 gttgcgggag tctcttccgg ctcccgcagc cactccttat tcagcgtctc actatcgccg
     5401 agatactcaa gcagccaggt taacgcaggc gacatatcat tttgctgcca tgtcagacaa
     5461 catgccgaat ccgggaaggg gttttccaat tcaagtgcta cccacttccc ctcattaagc
     5521 cacggtttgg cgaaatgtgt tggcaccatc cctatgcata atcctgccga gatacaggtt
     5581 gccgatgatt cccagtcagg cacgacaact cttttttggt tatccagcaa ccaggtaata
     5641 cgtttaggta gcgttcgcga ggtgtcttcg cgcaccaacg acggccagtt gcgcaacgta
     5701 tcatcgctga atgggccatc catcaacgcc agcgggtggt ggctggcaac aacgcaactc
     5761 cagcttagca tccccatatc ccggaaggca taacgaccgc ctaccggaat cgcgcgtgtt
     5821 gcgccaatcg ccagttccac gcgcccgtcg gaaagcgcat cccagacacc gttgaacact
     5881 tcctgaaaga caagaagttc gacatcatca aaatggcgat aaaaatcaac gatcatctgc
     5941 cgtgtacgtt ctggcctgac aatattatcc actgcgatag ctaactgacc gcgccagccg
     6001 ttcgctatct gctgacattg ctggcgggtg atctgcattt ttttgacaac agagcgccct
     6061 tctttgagaa accacgctcc agcagcggtc agctccacat cacggtgccg tcgttcaaag
     6121 agcggcaccg ccagccactc ttccagctga cgcacggtat agctgaccgc agaaggaacg
     6181 cgatgcagct cctgtgccgc agcgctaaaa ctaccattac gcgctaccgc atcaacaact
     6241 tcgagtgaat attctgacca catagtctgc ctgcaaaatt tttgaaatca gtcatcaaat
     6301 attaccgttt cacaacacta atttcactcc ctacactttg cggcggtgtt taattgagag
     6361 atttagagaa tatacatgca acctgggaaa agatttttag tctggctggc gggtttgagc
     6421 gtactcggtt ttctggcaac cgatatgtat ctgcctgctt tcgccgccat acaggccgac
     6481 ctgcaaacgc ctgcgtctgc tgtcagtgcc agccttagtc tgttccttgc cggttttgcc
     6541 gcagcccagc ttctgtgggg gccactctcc gaccgttatg gtcgtaaacc ggtgttatta
     6601 atcggcctga caatttttgc gttaggtagt ctggggatgc tgtgggtaga aaacgccgct
     6661 acgctgctgg tattgcgttt tgtacaggct gtgggtgtct gcgccgcggc ggttatctgg
     6721 caagcgttag tgacggatta ttatccttca cagaaagtta accgaatttt tgcgaccatc
     6781 atgccgctgg tgggtctatc tccggccctg gctcctctgt taggaagctg gctgctggtc
     6841 catttttcct ggcaggcgat tttcgccacc ctgtttgcca ttaccgtggt gctgattctg
     6901 cctattttct ggctcaaacc cacgacgaag gccggtaaca atagtcagga tggtctgacc
     6961 tttaccgacc tgctacgttc taaaacctat cgcggcaacg tgctgatata cgcggcctgt
     7021 tcagccagtt tttttgcatg gctgaccggt tcaccgttca tccttagtga aatgggctac
     7081 agcccggcag ttattggttt aagttatgtc ccgcaaacta tcgcgtttct gattggtggt
     7141 tatggctgtc gcgccgcgct gcagaaatgg caaggcaagc agttattacc gtggttgctg
     7201 gtgctgtttg ctgtcagcgt cattgcgacc tggactgcgg gcttcattag ccatgtgtcg
     7261 ctggtcgaaa tcctgatccc attctgtgtg atggcgattg ccaatggcgc gatctaccct
     7321 attgttgtcg cccaggcgct gcgtcccttc ccacacgcaa ctggtcgcgc cgcagcgttg
     7381 cagaacactc tacaactggg tctgtgcttc ctcgcaagtc tggtagtttc ctggcttatt
     7441 agtatcagca cgccattgct caccaccacc agcgtgatgt tatcaacagt agtgctggtc
     7501 gcgctgggtt acatgatgca acgttgtgaa gaagctggct gccagaatca tggcaatgcc
     7561 gaagtcgctc atagcgaatc acactgatct atatcgatat acttatactt aggctgctaa
     7621 caaaattttg ttgtatgatt gaaattagcg gcctatacta atttcgagtt gttaaagcta
     7681 cgataaatat tatgttttta cggggacagg atcgttcccg actcactatg gatggtcatt
     7741 tcggcaaggg ttcctccttt ccctctgttc tacgtcggat tatagactcg cgattttttc
     7801 tgcgagattt ctcacaaagc ccaaaaagcg tctacgctgt tttaaggttc tgatcaccga
     7861 ccagtgatgg agaaactatg agttcatcgt gtatagaaga agtcagcgta ccggatgaca
     7921 actggtaccg tatcgccaac gaattactta gccgtgccgg tatagccatt aacggttctg
     7981 ccccggcgga tattcgtgtg aaaaaccccg atttttttaa acgcgttctg caagaaggct
     8041 ctttggggtt aggcgaaagt tatatggatg gctggtggga atgtgaccga ctggatatgt
     8101 tttttagcaa agtcttacgc gcaggtctcg agaaccaact cccccatcat ttcaaagaca
     8161 cgctgcgtat tgccggcgct cgtctcttca atctgcagag taaaaaacgt gcctggatag
     8221 tcggcaaaga gcattacgat ttgggtaatg acttgttcag ccgcatgctt gatcccttca
     8281 tgcaatattc ctgcgcttac tggaaagatg ccgataatct ggaatctgcc cagcaggcga
     8341 agctcaaaat gatttgtgaa aaattgcagt taaaaccagg gatgcgcgta ctggatattg
     8401 gctgcggctg gggcggactg gcacactaca tggcatctaa ttatgacgta agcatggtgg
     8461 gcgtcaccat ttctgccgaa cagcaaaaaa tggctcagga acgctgtgaa ggcctggatg
     8521 tcaccatttt gctgcaagat tatcgtgacc tgaacgacca gtttgatcgt attgtttctg
     8581 tggggatgtt cgagcacgtc ggaccgaaaa attacgatac ctattttgcg gtggtggatc
     8641 gtaatttgaa accggaaggc atattcctgc tccatactat cggttcgaaa aaaaccgatc
     8701 tgaatgttga tccctggatt aataaatata tttttccgaa cggttgcctg ccctctgtac
     8761 gccagattgc tcagtccagc gaaccccact ttgtgatgga agactggcat aacttcggtg
     8821 ctgattacga tactacgttg atggcgtggt atgaacgatt cctcgccgca tggccagaaa
     8881 ttgcggataa ctacagtgaa cgctttaaac ggatgtttac ctattatctg aatgcctgcg
     8941 caggtgcttt ccgcgcccgt gatattcagc tctggcaggt cgtgttctca cgcggtgttg
     9001 aaaacggcct tcgagtcgct cgctaaaggc tattctatcg ccccctctcc gggggcgatt
     9061 tcagatcagg cttctgtacc tggttgattc atggcatttt ctcgtgccgc cagcacacgt
     9121 tctaccgtat ctaccactgc ctgagtttgt ggatcaattt caatgttgac gcgtgcgccg
     9181 agttttttct tcccaagagt cgtgcgttcc agagtttccg gaattaaatg gacgcaaaaa
     9241 cgcgttggcg tgacttcgcc gacggtcagg ctaataccgt cgatgccaat aaatcctttg
     9301 tacaggatat atttcatcaa ctgactatcc tggactttaa accagatctg gcgattattt
     9361 tccgaggtta atattttcgc cacttcagcg gtggtcataa tatgacctga cattaagtgt
     9421 ccgccaattt catcactgaa tttcgccgca cgctcaacgt ttacccaatc ccccactttt
     9481 aaatcgccaa gattggtaat gcgtaacgtt tctttcatca ggtcaaaact gacatggttg
     9541 ccgttaattt ccgtcacggt caggcagcaa ccgttatgcg ccacggaagc accggtttcc
     9601 aggccgtcca gcatgtggtc gggtaactcc accacatgcg tacgaaaatt tggtttctcg
     9661 tcaatcgaca ccagttttgc ggtgccctgt acaatccccg taaacatact tacaactcct
     9721 gaaatcagtt aagacattct gttcagcaca atagcaggtg gcaaacgccc ttaccagtga
     9781 aggggtaaga atgactattt tttcactgga gaattaataa atcctcgcta caatagactg
     9841 aatttcccct gcttcttctt tttgctgccc attcaggcgg ctttttagtc tctcatataa
     9901 ctacaaataa aaggtgttca cgtgcagaag tatatcagtg aagcgcgtct gttattagca
     9961 ttagcaatcc cggtgattct cgcgcaaatc gcccaaactg cgatgggttt tgtcgatacc
    10021 gtgatggcgg gcggctatag tgccaccgat atggcggcgg tcgctatcgg tacttctatc
    10081 tggcttccgg cgatcctctt tggtcacgga ctgctgctgg cattaacgcc ggttatcgcg
    10141 caattaaatg gttccggtcg acgtgagcgc attgcgcatc aggtgcgaca aggtttctgg
    10201 ctggcaggtt ttgtttccgt tctcattatg ctggtgctgt ggaatgcagg ttacattatc
    10261 cgctccatgg aaaacatcga tccggctctg gcggacaaag ccgtgggtta tctgcgtgcg
    10321 ttgttgtggg gcgcgccggg ctatctgttc ttccaggttg cccgtaacca atgtgaaggt
    10381 ctggcaaaaa ccaagccggg tatggtaatg ggctttatcg gcctgctggt gaacattccg
    10441 gtgaactata tctttattta tggtcatttc ggtatgcctg agctcggtgg cgttggttgt
    10501 ggcgtggcta ctgcggcggt gtattgggtc atgttccttg ccatggtttc ttacattaaa
    10561 cgcgcccgct ccatgcgcga tattcgtaac gaaaaaggca ccgcgaaacc cgatcctgcg
    10621 gttatgaaac gactgattca actcggttta ccgattgcgc tggcactatt ctttgaagtg
    10681 acactgtttg ccgtcgtggc tctgttagtg tctccgctcg gtattgttga tgtcgcagga
    10741 caccagattg ccctgaactt tagttcactg atgtttgtgc ttccaatgtc gctggcggca
    10801 gcggtaacta tccgcgtagg ttatcgtctg ggtcagggct caacgctgga tgcgcaaacc
    10861 gctgcgcaga ccgggcttat ggtgggtgtc tgtatggcaa ccctgacggc cattttcacg
    10921 gtttcactcc gggagcaaat cgccctgttg tacaacgaca atcccgaggt tgtaacgctg
    10981 gctgcgcatt tgatgttgct ggcggcggta tatcagattt ctgactcaat ccaggtgatt
    11041 ggcagtggga ttttgcgtgg ttataaagat acgcgttcca ttttctatat cacctttaca
    11101 gcttactggg tgctgggctt gccaagcggc tatattctgg cactgaccga tctggtcgtt
    11161 gaacctatgg ggccagcagg cttctggata ggctttatta tcggcctgac atcggcagcc
    11221 attatgatga tgttgcgtat gcggttcctg caacgtctgc cgtcagttat cattctgcaa
    11281 cgagcatccc gctaataaag acaaggcgca accttcacgg gttgcgcctg tgtttttacg
    11341 caggctggag cgttgcgcca atcccgtctt cgtctggctg taatttcaga gcgttgcaca
    11401 gagtttgccg actggcatct gttatctcaa cgtgtatatc accggtaact tcccctttca
    11461 cattgatgaa gtcaggtgag atttctttcg cactggtttg caggcaaatc gctccctctc
    11521 cgcgcaggcg tttcactttc agttgcacat gcgttgccgc accagtgatc agccacagtt
    11581 ttccgccatt cagattgatg ttaccaacaa taaaagtgac accgtcacct tttaccgtac
    11641 tgccgtcgag aatcaacaca ccgccctgct gtacagtaat cgttgattgt tgcagatctg
    11701 cgccatagcc aataatcatt gaagcgccgt ccagtaatgc aacactcccg gtcagttcaa
    11761 ccggtgcgcg atcttcctct acgacaaaat tttcgtccgc gctggtgggt gacaacagga
    11821 tcactgttcc accttgtatt accgcatttt ccagcgtacc ggcatgcact tcagcccgac
    11881 cacccacatt cacggacagg ttttgcgtct taccggaact gtagagctga aggccatccg
    11941 tccccagacg ataaatggat ccattctcaa caatagtgtc agagtcttca ccaccgagat
    12001 tattcatggt gccaccagca agcaacgtat cactggcttt cccggccagc ataaaaacgc
    12061 cgccctgatt aatctcacaa ttgctggctt ccccacctgg atacaccaac aattcaccac
    12121 cttcatctac cacgaccgct gaggttgtcc cattaaccaa caggccgccc tcttgatcga
    12181 gaatgatttt ttccgcgcga tgtccttcca gtacacgcag gttaccgcca ttttccagca
    12241 acaaaccgca ggcataaccc tgatcaacgc tgaattcacc ttcgggatgg cggccattaa
    12301 ccgtagcgag cgtagagaga ctaattgcgc ctccctcgga ctgaacaata tctgtggcaa
    12361 tggcaccgtc gctgaccgat agcgtgccat tgttaccgta ctgtgtgcat ttggcgatcc
    12421 caccggttgc cactttcaac cagccagccc ccgtgaccac ggtattttcg gctcttccgc
    12481 cagcttcaac aatcaactcg ccttcagtaa gttgcgtcgc gccaatgacc tcgccggtct
    12541 taacaatttg cacattcccg tcgctcatca agtttttcgc atcagatccc atgatttatt
    12601 cctttgctgc atctgtgtgc ctttattgct acctaagtgt aaaggctacg gaggatttat
    12661 ccacgacaga tttgagatgg tggcaaacaa ctctgtttaa actctgatac acgaattatt
    12721 gggttgtatc agatgtaaat gcgatcctga ataaaaatcg cccttgcaaa tcaacaaaat
    12781 atagccaatt tgcttaaaag ctctgcaaac ggtcgaaata gcgcagaaaa ttacgttttg
    12841 cctcttgcca ccttcccact ctgccgctaa tattcgtccc cgttgtcacc tacaacgttg
    12901 cgttcatagc tcagttggtt agagcaccac cttgacatgg tgggggtcgt tggttcgagt
    12961 ccaattgaac gcaccatcct gcgtccgtag ctcagttggt tagagcacca ccttgacatg
    13021 gtgggggtcg gtggttcgag tccactcgga cgcaccagat tttcttaatc tggtcttctc
    13081 ctttttccct ctgtttcttc tctgtatcca atacgttaaa agatttacac tgtcttcgta
    13141 tgcgttatca gaaggagaat cgctatggca actttgttac aacttcattt tgcttttaat
    13201 ggcccatttg gcgacgcaat ggctgagcag cttaaaccgc ttgctgagtc gattaatcag
    13261 gaacctggtt ttctgtggaa ggtatggaca gaaagtgaaa agaaccacga agccggtggg
    13321 atctatcttt ttactgatga aaaaagcgcc cttgcctatc tggaaaaaca tactgcccga
    13381 cttaaaaatc tcggcgttga ggaagttgtc gccaaagttt tcgatgtcaa tgagccactg
    13441 agtcaaatca atcaggcaaa actcgcctga cagaatttaa tcaagggcgg ttagcgccct
    13501 tttcatccct gtctgaaatt tctcaaattc taaaaatctc aaccaaactt atctgataac
    13561 actaaattcg aaagaatgcg tacaggtaag taacaatgaa aaaaattgct attgtgggtg
    13621 ccgggcctac ggggatctac accttattct cgcttctaca gcaataaact ccactttcta
    13681 tttctatctt cgagcaggct gacgaggccg gtgtcgggat gccatacagt gatgaggaaa
    13741 actcaaaaat gatgctggca aatattgcca gtattgaaat accgccgatt aattgtacgt
    13801 atctcgaatg gctacaaaag caagaagcca gccatctcca gcgttatggc gttaaaaaag
    13861 aaaccttgca cgatcgtcag tttttaccgc gaattctgct gggcgaatat ttccgcgatc
    13921 aatttttacg attagtagac caggcacgac agcaaaaatt tgcagtggct gtttatgaat
    13981 catgccaggt taccgatctg caaattacaa atgctggcgt catgctcgct acaaatcagg
    14041 atttacccag cgagacgttt gatttagcgg tgattgccac gggtcacgtc tggcctgatg
    14101 aagaagaagc aaccagaacg tattttccca gtccgtggtc aggcctgatg gaagcaaagg
    14161 tcgatgcgtg taacgtgggt attatgggaa catccttgag cggactggat gcggcaatgg
    14221 cagtggctat tcagcatggt tcgttcattg aagatgataa acaacacgtc gtttttaacc
    14281 gcgataacgc aagtgaaaag ctaaatatta cgttgatgtc gcgcacgggt attttacccg
    14341 aagccgattt ctattgccct attccctacg agcccttaca catcgtcacc gatcaggcat
    14401 taaatgctga gattcaaaaa ggtgaagagg gccttttgga tcgggtattt agattgatag
    14461 tagaggaaat caagtttgct gatccagact ggagccaacg catagcctta gagagcctga
    14521 atgtcgattc ctttgctcaa gcctggtttg ccgagcgcaa acaacgcgac ccatttgact
    14581 gggcagaaaa aaatctccag gaagtcgaac gcaataaacg agaaaaacat actgttccct
    14641 ggcgttatgt cattctgcgc ctgcatgaag ccgtacagga aattgttcca catctgaatg
    14701 aacacgacca taaacggttc agtaaaggcc ttgcccgggt ttttatcgat aattatgcgg
    14761 caatcccttc agagtctatt cgtcggctgc tggccttacg tgaagcgggg atcattcata
    14821 ttctcgccct cggtgaagac tacgaaatgg aaattaatga gtcgcgcacc gtcctgaaaa
    14881 cggaagacaa cagctactcg tttgacgttt ttattgatgc ccgcggacag cgtccgctta
    14941 aagtgaaaga tattcctttc cctgggctac gcgagcaatt acagaaaaca ggggatgaaa
    15001 tccctgatgt tggcgaagat tatacgttac agcaacccga agatattcgt ggacgcgtag
    15061 cgttcggcgc gttgccatgg ttgatgcacg accagccttt cgttcaggga cttacggcat
    15121 gtgcagaaat tggtgaggcg atggctcggg cggtcgtaaa acctgcatcc cgtgcacgtc
    15181 ggcgtctttc gtttgattaa aggtaaagct atcagcactc aacaaactga tgctgttcat
    15241 taagacgata gcggactccg gttcgaatat tgttttcacc ttcaatggcg acggcgaagc
    15301 gaactctttc gccgtcatga tatgccagtg cggcgcttcc ccctggcccg agaataattg
    15361 agtcgaccac gcccgtgctc actaccgttg aattttcacc gctggcaatg atgtgtacat
    15421 tgtcgccgct gttggcaatt ctggcgtttg cgccaaagct ggcgatttgc accaggtcac
    15481 cattactggc gacatgacac cgttcaccca atgtacaaac gcgtactcgc attccggtat
    15541 tcgcaatccg actactatct ccagcgctgc ttatccgcga agaattaccg gttacagcaa
    15601 cccgtgcgcg ttcaccggag ctgccaatgt gactgttaaa gccgacactt ccaatccgca
    15661 cgctataacc catactggca atttgcgcgg catacccagc gattgcgatt cgggcgttat
    15721 cctcacaaca gccgatgcga gcatgatcgt cgctgcgggc aaactgactg caaaatggta
    15781 tctctccggg gtctgtggcc agtttttgca tagaggaaac ttcctgatgc gcgaagtttt
    15841 catccgccag ccattttttc cacgcatact caaccagact ctccgcccag tccgtatatc
    15901 cttcctcaat cagtgcatga tgaatatcgg cataactacc gccgcgtcgg aaatggcgca
    15961 ggaaccagcg atacatcacc gctacgatac gccattctcg caggtctgct cgtgtaatga
    16021 tcattcgtta gtgccggtga tagccatcga ccatgctttt aaaggtttcg tgtggcgtac
    16081 gccccgtggt gcaaagataa agatgtccga agataaaaaa gaggcttata aatgccagag
    16141 caaaatgcgc ctgcaataac cagtatctta cgccaggaaa cacatctccc acggcttgcg
    16201 gatagagaca caacagcccc gtcaatagta acaacggcag caatccatac atgacaccaa
    16261 cataggcgac ctgctgtaag ggattaaatt tagactgtgt tgttgccggg aaaggatgtt
    16321 cttccccctg cataatgcca aacaaataaa atcgcgtttg ttttgccgct cgttccagcc
    16381 acccctgacg acgaatgcga tagtggtgac cattatcccc aacggcattg atcagcacaa
    16441 agccgagcca gcatgccagt aacaaaaatc cgcaaacttc atgcaccgca accagacttt
    16501 taaccgcagt tgcgcccacc atcgcaaagt gatttatcag cccacttgcc agcaacaata
    16561 caaagagtaa cgcattcgac cagtgccata atctgaccgc tttgctgtaa agataaacct
    16621 tctcaccatg atcggtggct gatttcttca cgccacgagc acgaagcaag gcgtgcagcc
    16681 ccagcaccaa ccacatccca accagcaata ctccggcaat gatcaaccac accggccaaa
    16741 attcgggagt gaactgtggc acatagttcg ctaactggct ctgaaactgt tcagcatgtt
    16801 gcgacgggtt catacatttt cctttttaat caaatgttga ccgaaccggc gatacagatg
    16861 cggtttcccg gcaccaggta gctgatattg atagtattta ttatcctgca accacgcctg
    16921 aatttctggg ctatcttcgc gaccaaagat caatgcgtgt tccggacagg cgctgacgca
    16981 aatgggcgga aagccttttg ccagtcggga ctcagcgcag aaatcacatt tatctgccac
    17041 tttagtgaca gggttaaggt agcgaacctg gtacggacaa gcgccaatgc aataactgca
    17101 gccgatgcac tgcgattttt ctacccgcac gagcccctgc tcatcacgcc acgatgcccc
    17161 cgtcgggcaa acgtcgatgc acggagcatc ttcgcagtgc tgacatgact ggcgaaaaaa
    17221 gtgatactgc gtttcgttgt cgttatcggt gactggaatg tgtgctatcg ataaacggct
    17281 tccctgagcg gggacgtggt tagttttacg gcatgcgcgg gcgcaaatat tacagccatt
    17341 gcaccgtgac tcgtcatgaa tcatggcata ccgaacttcc ttttcttgcc tcgtgttcgc
    17401 taacagagaa gacgcagaac cagtaaaaaa gattactgtt cccatcccca gaacaaattt
    17461 gcgtcgagtg aaggacatct gattatcccc taatgcagtg gctgcaactg tccaccctat
    17521 ccatgacatc tccctgaaat ttcaggggtt ctgaaactgc tctacctcga accattcgca
    17581 taagccataa gccttgccat aggtcataaa tcgctcacta aacaagtaca actccgccgt
    17641 cgatgactcc acctgccgta tatcggcata ttcaggtgca acatccatcg cggcgatcgc
    17701 ggcttcaatc tgcgcttcct ggaagtaata tggcgcttgc atcagcatgg cgactttgta
    17761 aggacgagga tatgtctggc actcaaaacg aacggcgtgt gcaatggcgc gacaaatgtc
    17821 ctgctccaca acttgcaaag acatcgccgc gtagttttca ctcatggcct gcgttgagta
    17881 atagtaatca tcctggcttc ccgtcataca agcgatatca gcgtagtctc cgttctgctt
    17941 aatgctttcc agcaaaactg acagctcctc ttctgcaacc gaatagggtg gcgagagaaa
    18001 cacggcgcgc gccaccagct gcccagccgc agaatgctgg cgaatgaact ctgccaggat
    18061 ttcagccggt tctggttcgg ttaccgtatc aacggggtga cgcatcccct gtaaccattg
    18121 ccgcttcgcc tcgtcaactt cgctgacttt cgctaacggc aattcatccc gatggttcat
    18181 ctcacccatt ccttacacag gcagtagatt gtgtgctgtc agatcggcgg caatatcttc
    18241 cagccccaga cgctgcaatg tttcgcgggt gggactacca agctgtgggt cccagcccat
    18301 ttctttgtag aacatcgtga gcgaagcatg catatcgtca cgatccattt tgtcagtacc
    18361 ttcagtaaag accgggatct gcggatcctt gtcgaatacc caggaacaga taagatcgtg
    18421 ttcattacgc atatctttgg tttgcataag ttttaccgtg taggcacgat gcaacgtaaa
    18481 gatacgctct gcagctaaat ctaatttttc ctgagtcatc tcttcgccgg tgatcgcttt
    18541 gaagaatttg gcttcaagcg ccagatcgcc ccggtaatta cggcttttca gcggcgaaac
    18601 ggtcattggc cagacccagt tacacagggt gacggcgtta tgcaaacaga cccgcaacag
    18661 cgaccactta gcatatttaa tttttgcgtc attgattggc gtgtagtttt tggtttcatc
    18721 gtaggcatct tcagaaccaa aaagctcttt cgccacttca cgttgcagtt tcaatggcaa
    18781 gccggaacca ataaagttga tatgggtatg tgtcatgcag tcacggttga acatacagtt
    18841 aacaatggaa ccgacctgcg ctgacgcttc attggcatgg tgaaccggat agccaaacgg
    18901 cgaccagagt ttatttttcg cgtagcccca gtactcttca cccaaattcc agcgttctgc
    18961 gatggcatat gaaccatcag ccaggtgact cagctcaccc acacgatgcg ccagacggta
    19021 gtaaaaatct ttaatgaaat taacgtcacc cgcttccagt tgatcccagt gaatttccgc
    19081 atactcttca gcaggcagaa cacgcttgaa cacccctttg ctgtaacaat aagtaaagtc
    19141 gcgatgcaac tgcccgtagt tacaccatag gccgtagtca tcgaacaaat tcagaccaac
    19201 caagttacca atcacacggc catcgtcttt atcttcaaaa tctttcggac cgttcggaaa
    19261 gatggtggta tggacaaagt tggctacaca agtgttacca cctgtgctgg gcacgccaaa
    19321 ctctttcacc cgaggaatat tcatttgagt catacaacgg atcgggcaag agtggcagcc
    19381 actcattttt actgtgtatt tctctgccgc cggacctaag tcaaaaacgg atttataggt
    19441 acgaaagccg accgtgttct gattgcctgg cggaatttcc cccgtttcaa tcggaccacc
    19501 ttcagccgcg ccccaaaaca gccctttacg tgctgtccaa cgtgacttgg gatctcccac
    19561 gattgcggcg tacttggcac gacatggttg ttattcgcac caataagttc agtcatcatg
    19621 taatcgttga gacgcttcat ctcctgacga tcggcaatgt tgaccccttt cgtcccttca
    19681 accgcaatcg ctttcaggtt tttcgaaccc ataattgcgc cagttcccgc accgccgctg
    19741 tggttacggc tattcaacat gccagagaga ggaacaaggt tttccccagc ctgaccaata
    19801 gccgccacac aggtttccgg actggtcaat cgacaaattt cttccgtcgt tgcgcgcgtc
    19861 ccttttcccc ataagaaatc ggctttttcc aggctaactt tgtcatcttt aatcttcagc
    19921 cataccg
//
LOCUS       DAJVUN010000066        19879 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.066, whole genome shotgun sequence.
ACCESSION   DAJVUN010000066 DAJVUN010000000
VERSION     DAJVUN010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19879
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.066"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            57..832
                     /gene="eutC"
                     /locus_tag="OQQ76_001997"
                     /pseudo
     CDS             57..832
                     /gene="eutC"
                     /locus_tag="OQQ76_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000200160.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
     gene            842..1501
                     /gene="eutL"
                     /locus_tag="OQQ76_001998"
     CDS             842..1501
                     /gene="eutL"
                     /locus_tag="OQQ76_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HCS1968502.1"
                     /translation="MPALDLIRPSVTAMRVIASVNAEFARELKLPPHIRSLGLISADS
                     DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA
                     MVAHIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY
                     GIDAALKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR
                     A"
     gene            1514..2014
                     /gene="eutK"
                     /locus_tag="OQQ76_001999"
     CDS             1514..2014
                     /gene="eutK"
                     /locus_tag="OQQ76_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutK"
                     /protein_id="HCS1968503.1"
                     /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL
                     VVEGDLAACRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPD
                     APVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR
                     YRLKPH"
     gene            2060..3112
                     /gene="eutR"
                     /locus_tag="OQQ76_002000"
     CDS             2060..3112
                     /gene="eutR"
                     /locus_tag="OQQ76_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator EutR"
                     /protein_id="HCS1968504.1"
                     /translation="MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHA
                     LTITAWQQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPA
                     TRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVITRQANFLHNPD
                     RVLHMLRSQSALEVKEQHKAALWGFVQQALATFCENPENLHQPAVRKVLGDNLLMAMG
                     AMLEDAQPMVTAESISHQSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNA
                     FHAILGIGPNAWLKRIRLNAVRRELISPWSQSTTVKDAAMQWGFWHLGQFVTDYQQLF
                     AEKPSLTLHQRMREWG"
     gene            complement(3118..4017)
                     /gene="hemF"
                     /locus_tag="OQQ76_002001"
     CDS             complement(3118..4017)
                     /gene="hemF"
                     /locus_tag="OQQ76_002001"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HCS1968505.1"
                     /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGG
                     RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV
                     PTSHANVRFFIAEKPGAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVY
                     PRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVE
                     RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY
                     DYQPKDGSPEAALSEFIKVRDWM"
     gene            complement(4021..4890)
                     /gene="amiA"
                     /locus_tag="OQQ76_002002"
     CDS             complement(4021..4890)
                     /gene="amiA"
                     /locus_tag="OQQ76_002002"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiA"
                     /protein_id="HCS1968506.1"
                     /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDEPLKTSNG
                     HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA
                     RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA
                     KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL
                     HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF
                     HWFDNQKAHSKKR"
     gene            5104..5529
                     /locus_tag="OQQ76_002003"
     CDS             5104..5529
                     /locus_tag="OQQ76_002003"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311332.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family acetyltransferase"
                     /protein_id="HCS1968507.1"
                     /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL
                     FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK
                     IQINVPEDNDMVLGMYERLGYEHADMLSLGKRLIEDEEY"
     gene            5516..5965
                     /locus_tag="OQQ76_002004"
     CDS             5516..5965
                     /locus_tag="OQQ76_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2919 domain-containing protein"
                     /protein_id="HCS1968508.1"
                     /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFIIAGASR
                     EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRASFPRTWHVLYFLLLLAQVVL
                     LCWQPWLWLNGESVSGIGLALVVADIVELIWLLTNRRLRACFNEEKE"
     gene            6172..6747
                     /locus_tag="OQQ76_002005"
     CDS             6172..6747
                     /locus_tag="OQQ76_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoE-regulated lipoprotein"
                     /protein_id="HCS1968509.1"
                     /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ
                     GVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQG
                     TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY
                     QFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR"
     gene            6843..7742
                     /gene="yfeX"
                     /locus_tag="OQQ76_002006"
     CDS             6843..7742
                     /gene="yfeX"
                     /locus_tag="OQQ76_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311329.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphyrinogen peroxidase"
                     /protein_id="HCS1968510.1"
                     /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF
                     EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR
                     HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI
                     KDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTR
                     VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM
                     LRFTKPVTGGYYFAPSLDKLMAL"
     gene            complement(7800..9104)
                     /gene="pbp4b"
                     /locus_tag="OQQ76_002007"
                     /pseudo
     CDS             complement(7800..9104)
                     /gene="pbp4b"
                     /locus_tag="OQQ76_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311328.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin binding protein PBP4B"
     gene            complement(9109..10533)
                     /gene="murP"
                     /locus_tag="OQQ76_002008"
     CDS             complement(9109..10533)
                     /gene="murP"
                     /locus_tag="OQQ76_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetylmuramic acid transporter subunit
                     IIBC"
                     /protein_id="HCS1968511.1"
                     /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD
                     PNIKTLEGVKSVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQL
                     KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN
                     FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF
                     FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM
                     PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS
                     LFPILSMAGAGQVGAALALYWRSQPHSVLRSQVRGAIIPGLLGVGEPLIYGVTLPRMK
                     PFVTACLGGTAGGLFIGLIAWWGLPMGLNSAFGPSSLVALPLMTSAQGILPAMAVYAG
                     GILVAWVCGFIFTTLFGCRNVNLD"
     gene            complement(10537..11433)
                     /gene="murQ"
                     /locus_tag="OQQ76_002009"
     CDS             complement(10537..11433)
                     /gene="murQ"
                     /locus_tag="OQQ76_002009"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HCS1968512.1"
                     /translation="MQLEKMITEGSNAASAEIDRVSTLEMCRIINDEDKTVPLAVERV
                     LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG
                     EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR
                     TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK
                     VFGNLMVDVVATNEKLHVRQVNIVKNATGCNAEQAEAALIACERNCKTAIVMVLKNLD
                     AAEAKKRLDQHGGFIRQVLDKE"
     gene            11598..12455
                     /gene="murR"
                     /locus_tag="OQQ76_002010"
     CDS             11598..12455
                     /gene="murR"
                     /locus_tag="OQQ76_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MurR"
                     /protein_id="HCS1968513.1"
                     /translation="MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQL
                     GISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNTTALHLHSSITSDDSLEVIA
                     RKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI
                     GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSL
                     ADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVASLKMIQR
                     SSELTQRLK"
     gene            12584..13375
                     /gene="ucpA"
                     /locus_tag="OQQ76_002011"
     CDS             12584..13375
                     /gene="ucpA"
                     /locus_tag="OQQ76_002011"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HCS1968514.1"
                     /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK
                     LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS
                     DDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA
                     AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPM
                     RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI"
     gene            13679..14695
                     /gene="cysP"
                     /locus_tag="OQQ76_002012"
     CDS             13679..14695
                     /gene="cysP"
                     /locus_tag="OQQ76_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate/sulfate ABC transporter
                     substrate-binding protein CysP"
                     /protein_id="HCS1968515.1"
                     /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN
                     PPFEQQWAKDNGGDKLTIKQSHAGSSKQVLAILQGLKTDVVTYNQVTDVQILHDKGKL
                     IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY
                     TYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE
                     SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA
                     QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
                     AGRN"
     gene            14695..15528
                     /gene="cysT"
                     /locus_tag="OQQ76_002013"
     CDS             14695..15528
                     /gene="cysT"
                     /locus_tag="OQQ76_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysT"
                     /protein_id="HCS1968516.1"
                     /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSW
                     AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL
                     PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ
                     PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI
                     AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG
                     H"
     gene            15528..16403
                     /gene="cysW"
                     /locus_tag="OQQ76_002014"
     CDS             15528..16403
                     /gene="cysW"
                     /locus_tag="OQQ76_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HCS1968517.1"
                     /translation="MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQ
                     AFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLL
                     LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF
                     VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF
                     GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL
                     ENQEKRAQQEEHHEH"
     gene            16393..17490
                     /gene="cysA"
                     /locus_tag="OQQ76_002015"
     CDS             16393..17490
                     /gene="cysA"
                     /locus_tag="OQQ76_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter ATP-binding
                     protein CysA"
                     /protein_id="HCS1968518.1"
                     /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL
                     LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL
                     PRRERPNSAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL
                     DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSLGNIEQA
                     DAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR
                     PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGE
                     RLFVGLQHAWLYNGDERIETRDEELALAQSA"
     gene            17624..18535
                     /gene="cysM"
                     /locus_tag="OQQ76_002016"
     CDS             17624..18535
                     /gene="cysM"
                     /locus_tag="OQQ76_002016"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HCS1968519.1"
                     /translation="MSTLEQTIGNTPLVKLQRMGPNNGSEVWLKLEGNNPAGSVKDRA
                     ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA
                     MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ
                     QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPAEYLP
                     GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPGAVVV
                     AIICDRGDRYLSTGVFGEEHFSQGAGI"
     gene            complement(18538..18906)
                     /locus_tag="OQQ76_002017"
     CDS             complement(18538..18906)
                     /locus_tag="OQQ76_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfeK family protein"
                     /protein_id="HCS1968520.1"
                     /translation="MKKIICLVITLLMTLPAYAKLTAHEEARINAMLEGLSQKKDLIF
                     VRNGDEHTCDEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE
                     NAQPFLHALIAQTDKTVPAQ"
     gene            19011..19862
                     /gene="pdxK"
                     /locus_tag="OQQ76_002018"
                     /gene_synonym="thiJ"
     CDS             19011..19862
                     /gene="pdxK"
                     /locus_tag="OQQ76_002018"
                     /gene_synonym="thiJ"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HCS1968521.1"
                     /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL
                     NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQEHDALRQLRAVTTGYMGTASQ
                     IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI
                     FELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITSASGNEENQEMQVVVVSADSVNV
                     ISHSRVKTDLKGTGDLFCAQLISGLLKGKALNDAVHRAGLRVLEVMRYTQQHESDELI
                     LPPLAEA"
BASE COUNT         4578 a         5039 c         5608 g         4654 t
ORIGIN      
        1 aaacggcccc cgcgctgtca gaagcaaagt gcaccaccac cacctgtgcg gcaccggtga
       61 cctcggaaag ctgcgcgttg gatttaggtt ctgcggaagc aaaagcgtgg attggtgttg
      121 aaaacccgca tcgcgcagac gtattaacag aactgcgtcg cagcaccgtg gcccgcgttt
      181 gtaccggtcg tgccggtccg cgtccgcgta cccaggcgtt gctgcgtttc ctggccgatc
      241 actctcgttc gaaagatacc gtactgaaag aagtgccgga agagtgggtg aaagcgcagg
      301 gcttgctgga agtacgctcc gaaattagcg acaaaaatct ctacctgact cgcccggata
      361 tgggccgcgc ctgtgtgcag aagctgttga agcgctgaaa gcacagtgtg ttgctaatcc
      421 ggacgtacag gtcgttattt ctgatggcct gtcaactgat gccatcaccg tgaactacga
      481 agagatcctg ccgccgctga tggcgggcct gaaacaggcc gggctgaaag tcggcacgcc
      541 attctttgtt cgttatggtc gcgtgaagat tgaagatcag atcggtgaga tcctcggcgc
      601 gaaagtggtg atcctgctgg tgggggaacg tccggggttg ggtcagtcag aaagcctctc
      661 ctgttacgcc gtttactcgc cgcgtatggc gaccaccgtt gaggccgatc gcacctgcat
      721 ctctaacatt caccagggcg gcacgccgcc ggttgaagcc gcagccgtca ttgtggattt
      781 ggcgaaacgt atgctggagc agaaagcatc cggcatcaac atgacccgat aaggaggcat
      841 catgccagct ttagatttga ttcgaccgtc ggtaaccgcc atgcgggtga ttgcctccgt
      901 taacgctgaa tttgcgcgtg aactaaaatt gccgccgcat attcgtagcc tcgggctgat
      961 ttctgctgat tccgatgacg tcacctacat tgcggctgac gaagcgacca agcaggcgat
     1021 ggtcgaagtg gtatatggcc gctcgctgta tgcgggagca gcacacggac cgtcaccgac
     1081 tgccggtgaa gtgctgatta tgcttggtgg gccaaacccg gcggaagtgc gtgctggtct
     1141 ggatgcgatg gttgcgcata ttgaaaatgg cgctgctttc cagtgggcta atgacgcaga
     1201 aaacaccgca ttcctggcac atgtagtttc gcgtaccggt tcttatctct catcaaccgc
     1261 cgggatcacg cttggcgatc cgatggcgta tctggtggca ccgccgctgg aagcgaccta
     1321 cggcattgat gcagcgttga aatctgccga cgtacagctg gtgacctatg tcccgccacc
     1381 gtctgaaacc aactactcgg cagcattttt aaccggtagc caggccgcgt gtaaagcagc
     1441 ctgtaacgcc tttaccgatg cagtgctgga aatcgcgcgt aatccaatcc agcgtgcgta
     1501 acggaggttg ccgatgatca atgcactggg attgctggaa gtggacggca tggtcgccgc
     1561 gatagatgca gcggatgcca tgctcaaagc agctaacgtt cgtctgctca gtcacgaagt
     1621 gcttgaccct ggtcgcttaa cgctggtggt ggaaggcgat ctggcggcgt gtcgtgcggc
     1681 gctggacgca ggttgtgctg ccgcgatgcg taccgggcgt gtcatcagcc gcaaggagat
     1741 cggtcggcca gacgatgaca cccagtggct ggttactggc tttaaccgcc agccgaagca
     1801 acccgtaagg gaacccgacg cgccagttat cgtcgcggaa tctgctgacg agttgttggc
     1861 gctgttaaca tcagtacgtc agggaatgac ggcaggagaa gtggctgccc actttggctg
     1921 gccgctggaa aaagccagaa atgcgctcga acagctcttt tctgccggga cgttacgtaa
     1981 acgcagtagt cgttatcgtc tcaagcccca ttaacctgtc ggaggtgccg ggtgtcctac
     2041 aacacccggc attaacatca tgaaaaagac ccgtacagcc aatttgcacc atctttatca
     2101 tgaaccctta cccgaaaacc tgaagctcac gccgaaggtc gaagtggata atgttcatca
     2161 acgacagaca acggatgtct atgaacatgc tttaacgatt accgcctggc agcagattta
     2221 cgatcagctg catccgggca agtttcatgg tgaatttacg gaaattctac tcgatgatat
     2281 tcaggttttt cgtgaataca ccggtctggc gctgcgtcag tcgtgcctgg tctggccgaa
     2341 ctcgttctgg tttggcattc cggcgacgcg cggtgagcag ggatttatcg gttcgcaatg
     2401 tctgggaagc gcggaaatcg ccacccgccc tggtggcact gaatttgaac tgagcacgcc
     2461 ggatgattac acgatcctgg gcgtggtgct ttctgaagat gtcatcaccc ggcaggctaa
     2521 ctttttgcat aacccggatc gggtattaca tatgctgcgt agccagtcgg cgctggaagt
     2581 gaaagagcag cataaagccg cgctgtgggg ctttgtccaa caggcgctgg cgacgttttg
     2641 cgagaacccg gaaaatctcc atcagcctgc agtgcgaaaa gtgctggggg ataatttgct
     2701 aatggcgatg ggggcgatgc tggaagacgc gcaaccaatg gtgacggcgg aaagcatcag
     2761 tcatcagagt taccgtagat tactttcccg cgcccgtgaa tatgtgctgg aaaatatgtc
     2821 tgagccggtg acggtgctgg acttgtgtaa tcaactgcat gtcagtcgcc gcacgctaca
     2881 aaacgcgttt cacgctattt taggcattgg cccaaacgcg tggctgaaac gcattcgcct
     2941 gaacgccgta cgccgcgaac tgataagccc gtggtcgcaa agcacaacgg taaaagacgc
     3001 cgccatgcag tggggattct ggcatctggg gcaatttgtc acggattacc agcagctgtt
     3061 tgccgagaag ccgtcgttga cgttgcatca gcggatgcgg gaatgggggt gagggagtta
     3121 catccaatcc ctgaccttaa taaactcact taacgccgct tctgggctgc catcttttgg
     3181 ctgataatca tactcccagc gtaccagtgg cggcattgac atcaggatcg actcggtgcg
     3241 cccgccagtt tgcaggccaa acagagtgcc gcgatcccag accagattga actcgacata
     3301 acgaccgcga cggtagagct gaaaattgcg ctcgcgctcg ccgtaggcca tcgctttacg
     3361 tcgctctaca attggtaaat aagcgtcggt gtagcctttg cctaccgcct gcataaaggc
     3421 aaaacagtgg tcgaaatctg gcgtgttcag atcatcaaag aacagcccgc caataccgcg
     3481 ctgttcgttg cgatgtttga ggtagaagta atcgtcgcac cactttttgt aacggggata
     3541 aacgtcttca ccaaatggca ggcacaggtc acgggcggtg cggtgccagt gaatggcgtc
     3601 ttcttcaaaa ccatagaaag gggttaaatc gaagccgccg ccaaaccacc agacgggctc
     3661 tgcacccggt ttttcggcaa taaaaaaacg cacattcgcg tggctggtgg gaacatacgg
     3721 gttatgcgga tgcactacca gtgaaacgcc catcgcctcg aaactgcgcc cggcaagttc
     3781 cgggcgatga gcggtggcgg aagcaggcat cgcctcgccg tggacgtgag aaaagttgac
     3841 gcctgcctgt tcgaaaacac caccattacg caacacccga ctacgcccgc cgccgccagc
     3901 ttcgcgctgc caactatctt cgacaaattc tgcgccatcg acggcggtca gctgctgaca
     3961 aatcgtatcc tgaaggttga gcagaaactg tttaacctgg tgtgcgtcgg gtttcataac
     4021 ttatcgcttt ttcgaatgtg ctttctggtt gtcgaaccag tggaaataac tgatcacgcc
     4081 ttcagcaatc gctgtggcga ttttctgacg aaacgccgcc gtgcctaaca gccgctcttc
     4141 ttccgggttg gtgataaacg aggtttccac cagcaccgaa ggaaccgacg gcgatttcaa
     4201 caccacaaac gcggcttgtt cggtgttgcg gctgtgcagt ttatgcaccg gcttaatctt
     4261 tttcagaata tgcgagccaa gcgtcaggct gtttttaata gtatcggttt gcaccagatc
     4321 aaacagcact tgctgcaata ggtgatcctt gtcagtcgcc tttttaccgg caacttcatc
     4381 ggcgcggttt tcgcgttcag acaggtattt cgccattgcg ctacttgccc cacggttaga
     4441 gagggcaaat accgaagcac cggcagcttt cgggttggta aagccatcgg catgaattga
     4501 cataaacaga tctgcgccat gtttatgggc gatttcaacg cgatcgtaaa gtgggataaa
     4561 cgtatcgcca gaacgcgtta aacgcgcatc aatcccatga ttacgcaaaa tggaacggac
     4621 gtttttagca atcgccagca ccacatgttt ttctttcgaa ccgttgcgtc cgatcgctcc
     4681 ggtatcaatt ccgccgtggc ctggatcgag aacaacgaca cgtttgccgc cagatttttt
     4741 ggctttcggc ttgctgtgtc cgttgctggt ttttaaaggt tcgtctttgg cgatggcttg
     4801 cgacattcct gacaacgtca gggcagccaa accggctttc agcacctggc ggcgcgaagt
     4861 gagtgttttt agtggtttaa aagtgctcat acggcctgag ttgtaataat aaagttccag
     4921 atgttatatc gtatcgcgta atccgttacg acggtttgat gttgagaatt gttttacttt
     4981 tcatttcaat agttgacaac tccccattat gccacttttt caaccgattt tcgtcagata
     5041 ttggctaatt ctaccgttca cgccataatc agccttttaa cccgcaaaaa ggtaacgaat
     5101 accatggaga tacgcgtatt tcgccaggaa gatttcgaag aggtcatcac cctttgggag
     5161 cgttgcgact tgctgcgtcc gtggaacgat ccggaaatgg acatcgagcg taagatgaac
     5221 catgacgtca gtttgttttt ggtcgctgag gtgaacggtg aagtggtcgg aacggtgatg
     5281 ggcggttatg acgggcatcg cgggtctgct tattatcttg gcgtgcatcc agagtttcgt
     5341 gggcgtggga ttgccaatgc gttgcttaat cggctggaga aaaagctgat tgctcgtggc
     5401 tgcccgaaaa ttcagatcaa tgtgccggaa gataacgaca tggtgctcgg aatgtatgaa
     5461 cgcctgggat atgaacacgc cgacatgctg agtctgggta agcgtttgat tgaagatgaa
     5521 gagtactgag ttccatcctg tccattatga tgcgcacgga cgcctgcgtt tacccttgct
     5581 cttctggctt gtgctattgc ttcaggcgcg aacctgggtg ctgtttatca ttgccggtgc
     5641 gtcgcgcgag cagggtactg cgctgctaaa tctgttttat cccgatcacg ataatttctg
     5701 gctggggttg attcccggta ttccggcggt gctggcgttt ttgttgagcg gtcggcgggc
     5761 ttcgtttcct cgcacctggc atgtgctcta ttttctgttg ctgttggcgc aggtggtttt
     5821 actttgctgg caaccgtggc tgtggctgaa cggtgaatcc gttagcggta tcggtctggc
     5881 gctggtagtg gcggatattg tggagttaat ctggctgctg accaatcgac gtttacgcgc
     5941 ttgttttaat gaagaaaaag aataacgcag aggtgcgctt tgtttatgcc ggatgcggcg
     6001 tgaacgcctt atccggccta caaaacatcg aaaattcaat atattgcagg agaaagtagg
     6061 cctgataagc gtagcgcatc aggcaatttt gtgtttgtca tcaaccttta acggcacttt
     6121 ttggtgaatt tgcactccaa gcaacgttat tgaataacca aaggaagtga catgaaatcg
     6181 ctgcgtttaa tgttatgcgc tatgccgttg atgctgaccg gctgttccac gatgtcgtca
     6241 gttaactggt cggccgctaa cccgtggaac tggtttggat cgtccaccaa agtgagcgag
     6301 cagggcgtgg gtgaattaac ggcgtccaca ccactgcaag aacaagccat tgctgatgcg
     6361 cttgatggcg attatcgcct gcgcagcgga atgaaaaccg cgaacggcaa cgtggtgcgc
     6421 ttttttgaag tgatgaaagg cgacaacgtg gcgatggtga ttaacggcga tcaaggcacg
     6481 atcagtcgca ttgacgtgct ggatagcgat attcctgctg acaccggtgt taaaatcggt
     6541 acaccgttta gcgaccttta cagcaaagca tttggcaatt gccaaaaagc tgatggtgat
     6601 gataatcgtg ccgtcgaatg taaagccgaa ggcagtcaac atattagcta ccagttcagt
     6661 ggggaatggc gtggtcctga agggttaatg ccttcggacg ataccctgaa aaactggaaa
     6721 gtcagtaaaa ttatctggcg gcgttaattt gcgtctgaac aaaccgccgc cgcgaaaaaa
     6781 cacgtaaaat agcgctcaac aatgccacgg attgcgtggc attcttattt tcaggaggaa
     6841 caatgtctca ggttcagagt ggcattttgc cagaacattg ccgcgcggcg atttggatcg
     6901 aagccaacgt gaaaggggaa gttgacgccc tgcgtgcggc cagtaaaaca tttgccgaca
     6961 aactggcaac ttttgaagcg aaattcccgg acgcgcatct tggtgcggtg gttgcctttg
     7021 gtaacaacac ctggcgcgct ctgagcggcg gcgttggggc agaagagctg aaagattttc
     7081 cgggctacgg taaaggcctt gcgccgacga cccagttcga tgtgttgatc cacattcttt
     7141 ctctgcgtca cgacgtaaac ttctctgtcg ctcaggcggc gatggaagcc tttggtgact
     7201 gcattgaagt gaaagaagag atccacggct tccgttgggt ggaagagcgt gacctgagcg
     7261 gctttgttga cggtacagaa aacccggcgg gtgaagagac gcgccgcgaa gtggcggtta
     7321 tcaaagacgg cgtggatgcc ggcggcagct atgtgtttgt gcagcgttgg gagcacaacc
     7381 tgaagcagct caaccggatg agcgttcacg atcaggagat gatgatcggg cgcaccaaag
     7441 aggccaacga agagattgac ggcgacgaac gtccggaaac ctctcacctc acccgcgttg
     7501 atctgaaaga agatggcaaa gggctgaaga ttgttcgcca gagcctgccg tacggcaccg
     7561 ccagtggcac tcacggtctg tacttctgcg cctactgcgc gcgtctgcat aacattgagc
     7621 agcaactgct gagcatgttt ggcgataccg atggtaagcg tgatgcgatg ttgcgtttca
     7681 ccaaaccggt aaccggcggc tattacttcg cgccgtcgct ggacaagctg atggcgctgt
     7741 aagcgtttct gattctatga ttaaaggcca gccagtaaca aaactgactg gcctttttat
     7801 tacttttgct tcaacgccgc atacacctga tcaactaccc aaccataagt tgcaatcggt
     7861 aactgaccgc tttcgaacat attgggattt ttttgtggat cggcaactgg cgaatggggc
     7921 ttgttgctta acatcacaat cgccatatga ttgaccggat cgataacggt tactgtcccg
     7981 gtccagccag tgtgaccgta ggtttgcggg cttgccagcg tgccaaacgt cggcgtcatg
     8041 gtggcattac cattcacgcg ccagccgagg ccaaaagtgg catcttcctt agagctggtg
     8101 gtgaacatct tcaccgtttc cgcactgaac agctgcacat cgccatagcc cccgccgttc
     8161 agcatcgttt gcattaacac cgcaatatcg ccggtattgg aaaacaaacc tgcgtgcgcg
     8221 gaaacgccgc ccatcgaata aaaggctttt tcatcgtgca cctgacccca gagagtggag
     8281 gtgcggatat tcgggaaatg gatcacgcca tcgcgggtat tgccgttcaa ttccgtggcg
     8341 gcaatttgtt gcggtttaaa gcctttcagc agcgggttaa ataccgtatg tgtcaggccg
     8401 agcgggcgat aaatcgactc ttcaacatag cggtcaagcg gctgaccggt aaccgactcg
     8461 acgataaatc caagcagcat ataatcgaca tcgctgtaga tatgtttgct gccgggctga
     8521 tattccagcg gcgtgcgctt gatcatctac agcgtctggc ctttatccta ggaatataac
     8581 gcgcccgcga ccgctttatt cgggtattgc ggatctgccg ggaaaccgcc gctgtgatgc
     8641 agcaggtcag aaatccgcag ggtgtttttg cctttaatgg tgtcatttgg actatcggca
     8701 aaccccggaa tatatttcgc aatccgatcg tcaggatgca gtttgccttc gctcatcagc
     8761 ttttgcaggg cgaagttcgt ggcgtacatt ttggtgtttg aggccaggtc atacagcgtc
     8821 ccggtggtgg ctttgacagg ctgttccatc aacacgctgc catcgtactt tttcgccgct
     8881 ccccaggctt tgcgatacac aatctgatta tctttaatga tcagcaggtt tacgccggga
     8941 taaccggcat caacttgctg gctaatccag cgatccatct ggttaagccg tttgacgtta
     9001 aaccctgctt tctctggcga gctttctgtc agaacagggt attttgcggc gctgacgcta
     9061 caactaacag ccagcagaga aagatagagc attgtccgtt tcatgatatc agtccagatt
     9121 gacgttacgg cagccaaaga gcgtggtgaa aataaacccg caaacccatg ccaccagaat
     9181 cccgccagca taaaccgcca tggccggaag gatgccttgt gcggaagtca tcagcggcag
     9241 cgctaccaga ctagacggcc caaaggcgct gtttaagccc atcggcagac cccaccaggc
     9301 tatcaggccg ataaacaaac cgcccgccgt accgcctaaa caggcggtga caaacggctt
     9361 catgcggggc agggtgacac cgtaaatcag cggttcacca acgcccagca ggccgggaat
     9421 aatcgccccg cgtacctgac tgcgtagcac actgtgcggt tgcgaccgcc agtagagtgc
     9481 cagcgccgcg cccacctggc ccgcgcctgc cattgaaagg atgggaaata agctgttgaa
     9541 tccctggctg tccattaacg cgaggtaaac aggaataaag ccctgatgca cgccaaatac
     9601 cacggcgatc aggaacagcc cggctaaaac cgcacaaccg aacggattac tgttcaggtg
     9661 cataaacagc catgacatac cttcgaataa ccagccaccc agcggcataa tgatcaggta
     9721 cgcaagcgta gcggtgatca gcagggtgat taacgaggtc agcagcatgt cgagatcgtc
     9781 cggcataaag cggcgcacca tgccttcaat gcgggcgcag gcccacgcgg caatcagcac
     9841 gccgataata ttgccgcgcg gatcgatggg cagaccaaag aaatcgtgaa aaccggcgta
     9901 gtaaccggtg gttgcagcgg ggttataacc gagcaaaaag agtgcggcaa taattgcgcc
     9961 attgacgccc gtgccgccaa atgcctgggc ggcgttatag cccaccagaa tcaccaggaa
    10021 ggtgaacaaa cctttgctga acaccttcat aaaattcagc gcgtcgggta gcgtgccctg
    10081 agcatctgcc ggaacgtgca tcaccgtggc aattaacgtc gctatcccca gcagcagacc
    10141 ggcggcaata aaaccgggga tcagcggcgt gaagatggtg gcgaatttgg cgagaaattg
    10201 ttgcacgccg gaggtttgtt tggcttttaa ctgacgtttg ttctgggcgg cgatttctgc
    10261 ggcatcctgt accggtgcct cgcccagcag ctcgctcatc gcttttgcgg cacgatgcgc
    10321 tttaccaggt ccaaaaacga cctgcacctg gtcgctggtc aaaatgacgc tcttcacgcc
    10381 ttccagcgtt ttgatattgg gatcaaccag tgaactgtca tgtacaccca gacgcaggcg
    10441 cgtcatacag ttaccacaac tggcgatatt tcccggtccg ccgacacggg taagaatggt
    10501 gttcagaagt tcactgctga tctctttggc catgggttat tccttgtcta aaacctgacg
    10561 aataaagccg ccgtgttgat ccaggcgttt tttagcttct gcggcatcga gatttttcag
    10621 caccatcaca atggccgttt tacagttgcg ctcgcaggca attaacgccg cttccgcttg
    10681 ttcggcatta catccggtgg cgtttttaac gatattgacc tggcgcacat gcagtttttc
    10741 gttggtggcg accacatcga ccataaggtt gccgaacact ttgccggatt taatcatcag
    10801 cccggtggaa agcatattga gcaccagttt ctgcgctgta cctgctttca tccgcgaaga
    10861 accggtaaca acttcggcac ctacaatcgg tgtaatggca aactcagcgg tggttgaaac
    10921 ggcgctcccc ggattacagg aaattcccac tgtgcggcag ccgagctggc gtgcgtattc
    10981 cagtccggca atcacatacg gcgtgcgacc gctggcagca atgccaacca ccacatcctg
    11041 tgccgttaaa ttaatatttt tcagatcatt aacaccgcct tcccggctat cttccgcgcc
    11101 ttccaccgcg tgctgaatgg catattcgcc gccagcaatc aaaccaacca ccagacccgg
    11161 tttcacgccg taggtgggcg gacattcgct ggcatccaga atccccagac gaccggatgt
    11221 tcccgcaccg aggtaaatca gacgcccgcc gccgcttacc tgggcgtgga taacatcgat
    11281 cgccgcggcg atatccggca gtacgcgctc aacggcaagc ggtacggttt tatcttcatc
    11341 gttgataatc cggcacattt ccagcgttga tacgcggtca atttcagccg aggcggcgtt
    11401 cgagccttca gtaatcatct tttcaagttg catcggtggt gaccttaact atttacgatc
    11461 aaataattgc agatgtatgg aatcatatat cctgaattga cagacttaaa ggaatcattg
    11521 agtctacact cgcagagtgt gaagagcgtc ataagaactt aagcggaatt tatgctgcca
    11581 gcccaggaga gtggaagatg ttgtacctga cgaaaataag caatgcgggg agtgaattca
    11641 ccgaaaacga gcaaaaaatc gctgactttc tgcaggccaa cgtgagtgag ctgcaatccg
    11701 tttcttcacg gcagatggcg aaacagctcg gcattagcca gtcgagcata gtgaaatttg
    11761 cccaaaaact cggcgcgcaa ggatttactg aattgcgtat ggcgttaata ggcgaataca
    11821 gtgccagccg ggagaaaacg aataccacgg cgctgcacct gcacagttcg attaccagtg
    11881 atgattcgct ggaagtgatt gcccgcaaat tgaatcgcga aaaagagctg gcgctggagc
    11941 aaacctgtgc gttgttcgac tacgcgcggc tgcaaaaaat cattgaggtc atcagtaaag
    12001 caccgtttat ccagataacg ggcctgggcg gatcggcgct ggtggggcgc gatctgtcgt
    12061 tcaaactgat gaaaattggc tatcgcgtgg cctgcgaagc cgacacgcac gtacaagcca
    12121 ccgtttccca ggcgttgaaa aaaggcgatg tacaaatcgc tatctcttac agcggcagta
    12181 aaaaagagat tgtcttgtgc gcagaagcgg cacgaaagca gggggcaacg gtgattgcca
    12241 ttacttctct ggctgactct ccgctgcggc ggctggcgca tttcacgctc gataccgttt
    12301 ccggtgaaac cgaatggcgt agctcgtcga tgtctacccg cacggcgcaa aattctgtta
    12361 ccgatttact gtttgttggt cttgtgcaac tcaatgatgt ggcgtcattg aaaatgattc
    12421 agcgcagcag tgagctaaca caacgcctga aatgatgcat aaagcagcga ctggattgag
    12481 attttcctga attagtgagc tgatccgcag caatattttg tttatcctgt attttcagag
    12541 ggaatggagt gtaacgctct gtattaacaa ggagagcatt aaaatgggta aactcacggg
    12601 caagacagca ctgattacgg gcgcattgca gggaattggc gaaggaattg ccagaacttt
    12661 tgcacgtcat ggcgcgaacc taatcttgct ggatatctcc cctgagatcg aaaagctggc
    12721 ggacgaactg tgtggtcgtg gtcatcgctg tacggcggtt gtcgccgatg tgcgtgaccc
    12781 ggcgtcggta gccgcagcta tcaaacgcgc gaaggaaaaa gaagggcgca ttgatatcct
    12841 ggtgaataac gcaggcgttt gtcgtctggg cagtttcctc gatatgagcg atgacgatcg
    12901 cgatttccat attgatatca atattaaagg cgtatggaac gtcacgaagg cggtgctgcc
    12961 ggagatgatt gcgcgcaaag atggtcgcat tgtgatgatg tcttcagtca ctggtgatat
    13021 ggtggccgat cctggcgaaa cggcgtacgc cttaacgaaa gcggcgattg ttggcctgac
    13081 aaaatcgctg gcggtggagt acgcgcagtc tggtattcgc gttaacgcca tttgcccggg
    13141 atacgtgcgc acaccaatgg cggaaagcat tgcccgccag tcgaacccgg aagatccaga
    13201 gtcggtgctg actgaaatgg cgaaagcaat cccgatgcgt cgcctcgccg atccgctgga
    13261 agtcggcgaa ctggcggcct tcctcgcatc ggatgaatcc agctatttaa ccggtacaca
    13321 gaatgtgatt gatggcggca gcacactgcc ggagacggtt agcgtcggta tctgattcac
    13381 ctctgtttcc tccctgcatg tgtggggagg atttcgtctt gaactaagtt caccaggcta
    13441 ttttatttgt tattttggcc ccgggcagtg ctcgaaatac tcacgtacta tgtgtacgct
    13501 ccggtttctc cgcgctgtcc gtgtccaaac tgcctgcaac aattacgcct gttgaaccaa
    13561 gttcttattc cctttttaac ttccaaatca ccaaacggta tataaaaccg ttactccttt
    13621 cacgtccgtt ataaatatga tggctattag aaagtcatta aatttataag ggtgcgcaat
    13681 ggccgttaac ttactgaaaa agaactcact cgcgctggtc gcttctctgc tgctggcggg
    13741 ccatgtacag gcaacggaac tgctgaacag ttcttatgac gtctcccgcg agctgtttgc
    13801 cgccctgaat ccgccgtttg aacagcaatg ggcaaaagat aacggcggcg acaaactgac
    13861 gataaaacaa tctcatgccg ggtcatcaaa acaggtgctg gcaattttgc agggcttaaa
    13921 aaccgacgtt gtcacttata accaggtgac cgacgtacaa attctgcacg acaaaggcaa
    13981 gctgatcccg gctgactggc agtcgcgcct gccgaataat agctcgccgt tctactccac
    14041 catgggcttc ctggtgcgta agggcaaccc gaagaatatc cacgactgga acgacctggt
    14101 gcgctccgac gtgaagctga ttttcccgaa cccgaaaacg tcgggtaacg cgcgttatac
    14161 ctatctggcg gcatggggcg cagcggataa agctgacggt ggcgacaaag ccaaaaccga
    14221 acagtttatg acccagttcc tgaaaaacgt tgaagtgttc gatactggcg gtcgtggcgc
    14281 gaccaccact tttgccgagc gcggcctggg cgatgtactg atcagcttcg agtcggaagt
    14341 gaacaacatc cgtaaacagt atgaagcgca aggctttgaa gtggtgattc cgaaaaccaa
    14401 cattctggcg gaattcccgg tggcgtgggt cgataaaaac gtgcaggcca acggtacgga
    14461 aaaagcagca aaagcctacc tgaactggct ctacagcccg caggcgcaga ccatcatcac
    14521 cgactattac taccgcgtaa ataacccgga agtcatggac aaactgaaag ataaattccc
    14581 gcagaccgag ctgttccgcg tggaagacaa atttggctcc tggccggaag tgatgaaaac
    14641 ccacttcacc agcggcggcg agttagacaa gctgttagcg gcggggcgta actgatgttt
    14701 gcagtttcat caagacgcgt gctgccgggc tttaccttaa gcctcggcac cagtctgctg
    14761 tttgtgtgcc tgattttgct gctgccgctc tccgcgctgg tgatgcagct ggctcagatg
    14821 agctgggcgc agtactggga ggtgatcacc aacccacaag tggtcgcggc ctacaaagtg
    14881 acgctgctgt cggcgtttgt ggcatcgatt tttaacggcg ttttcggtct gctgatggcg
    14941 tggattttaa cacgttatcg ctttccgggc cgcacgctgc ttgatgcgct gatggattta
    15001 ccctttgcgc tgccaacggc agtcgccggt ttaacgctgg cctcgctctt ttccgtaaac
    15061 ggtttttacg gtgaatggct ggcgaagttt gatatcaaag tcacctatac ctggcttggt
    15121 attgcggtgg cgatggcctt taccagcatt ccgtttgtgg tgcgtaccgt gcagccggtg
    15181 ctggaagagt taggcccaga atatgaagaa gcggcggaaa cgcttggtgc aacgcgctgg
    15241 cagagtttct gcaaagtggt gctgccggaa ctttctccag cgctggtggc gggcgtggcg
    15301 ttgtcgttta cccgtagtct tggtgagttt ggcgcggtga tatttatcgc cgggaacatc
    15361 gcctggaaga cggaagtgac gtcgctgatg atttttgtgc gcttgcagga gtttgattac
    15421 ccggcggcga gcgcgattgc ttcggtgatc ctcgcggcat ccctgctgct gctgttctca
    15481 attaacactc tgcaaagtcg ctttggtcgg cgtgtggtag gtcattaatg gcggaagtta
    15541 cccaattgaa gcgttatgac gcgcgcccga ttaactgggg caaatggttt ctgattggca
    15601 tcgggatgct ggtatcggcg ttcatcctgc tggtgccgat gatttatatc ttcgtacagg
    15661 cgttcagcaa agggctgatg ccggttttac agaatctggc cgatccggac atgctgcacg
    15721 ccatttggct gacggtgatg attgcgctga ttgccgtacc ggtgaacctg gtgttcggca
    15781 ttctgctggc gtggctggta acgcgcttta acttccccgg acgccagtta ctgctgacgc
    15841 tactggacat tccgtttgcc gtatcgccgg tggttgccgg tctggtgtat ctgctgttct
    15901 acggctctaa cggtccgctg ggcggctggc tggatgaaca taatttgcag attatgttct
    15961 cctggccggg aatggtgctg gtcaccatct ttgtgacctg tccttttgtg gtgcgcgagc
    16021 tggtgccggt gatgttaagc cagggcagcc aggaagacga agcggcgatt ttgcttggcg
    16081 cgtctggctg gcagatgttc cgtcgcgtca cattgccgaa cattcgctgg gcgctgctgt
    16141 atggtgtggt gctaaccaac gcccgcgcga ttggcgagtt tggtgcggtg tcggtggttt
    16201 ccggctcgat tcgcggcgaa acactttcgc tgccgttaca gattgaattg ctggagcagg
    16261 actacaacac cgtcggctcc tttaccgccg ccgcgctgtt gacgctgatg gcgattatca
    16321 ccctgttttt aaagagtatg ttgcagtggc gtctggagaa tcaggaaaaa cgcgcgcagc
    16381 aggaggagca tcatgagcat tgagattgcc aatattaaga agtcgtttgg tcgcacccag
    16441 gtgctgaacg atatctcact ggatattcct tctggtcaga tggtcgcgct gctggggccg
    16501 tccggttccg gaaaaaccac gctgctgcgc attattgccg ggctggagca tcaaaccagc
    16561 gggcatattc gcttccacgg taccgacgtg agccgcctgc acgcacgcga tcgtaaagtc
    16621 ggtttcgtgt tccagcatta cgcgctgttc cgtcatatga cggtgttcga caatatcgct
    16681 tttggcctga cggtgctgcc acgtcgcgag cgcccgaatt ccgcagccat caaagcgaaa
    16741 gtgacaaaat tgctggagat ggtccagctt gcgcatctgg cggatcgtta tccggcacag
    16801 ctttccggcg gccagaaaca gcgcgtggcg ctggcgcgcg cgctggctgt tgaaccgcaa
    16861 attctcctgc ttgatgaacc gtttggcgcg ctggatgcgc aggtgcgtaa agagctgcgt
    16921 cgctggctgc gtcaactgca tgaagagctg aaattcacca gcgtgttcgt gacccacgac
    16981 caggaagaag cgaccgaagt agctgatcgt gtagtggtga tgagcctggg caatatcgag
    17041 caggctgatg cgccggacca ggtatggcgc gaaccagcga cccgatttgt gctcgaattt
    17101 atgggcgaag tgaaccgcct gcagggaacc attcgcggcg ggcagttcca tgttggcgca
    17161 catcgctggc cgctggggta tacgcctgcg tatcaggggc cggtggatct cttcctgcgc
    17221 ccgtgggaag tggatatcag ccgccgtacc agtctcgatt cgccgctgcc ggtacaggta
    17281 ctggaagcca gcccgaaagg tcactacacc caattagtgg tgcagccgct ggggtggtac
    17341 aacgaaccgc tgacggtcgt gatgcatggc gacgatgccc cgcagcgtgg cgagcgttta
    17401 ttcgttggtc tgcaacatgc gtggctgtat aacggcgacg agcgtatcga aacccgagat
    17461 gaggaacttg ctctcgcaca aagcgcctga taggttgagt gaatgttaaa cgcccggagg
    17521 cgcttcccgc gatccgggct ttttaatggc aaggtttgta acctgtagac ctgataagac
    17581 gcgcaagcgt cgcatcaggc aacaccacgt atggatagag atcgtgagta cattagaaca
    17641 aacaataggc aatacgcctc tggtaaagtt gcagcgaatg gggccgaata acggcagtga
    17701 agtctggttg aaactggaag gcaataaccc ggcaggttcg gtgaaagatc gtgcggcact
    17761 ttcgatgatc gtcgaggcgg aaaagcgcgg ggaaattaaa ccgggtgatg tgttaatcga
    17821 agccaccagt ggtaacaccg gcattgcgct ggcaatgatt gccgcgctta aaggctatcg
    17881 catgaaattg ctgatgcccg acaacatgag ccaggaacgc cgtgcggcga tgcgtgctta
    17941 tggtgcggaa ctgattcttg tcaccaaaga gcagggcatg gaaggtgcgc gcgatctggc
    18001 gctggagatg gcgaatcgtg gcgaaggaaa gctgctcgat cagttcaata atcccgataa
    18061 cccttacgcc cattacacca ctaccgggcc ggaaatctgg cagcaaaccg gcgggcgcat
    18121 tacccatttt gtctccagca tgggaacaac cggcactatc accggcgttt cacgctttat
    18181 gcgcgaacaa tccaaaccgg tgaccattgt cggcctgcag ccggaagaag gcagcagtat
    18241 tcccggcatt cgccgctggc ctgcggaata tctgccgggg attttcaacg cttctctggt
    18301 ggatgaggtg ctggatattc atcagcgcga tgcggaaaac accatgcgcg aactggcggt
    18361 gcgggaagga atattctgtg gcgtcagctc aggcggcgcg gttgctggag cactgcgggt
    18421 ggcaaaagct aaccctggtg cggtggtggt agcgatcatc tgcgatcgtg gcgatcgcta
    18481 cctctccacc ggagtgtttg gggaagagca ttttagccag ggggcgggga tttaagatta
    18541 ttgcgcaggc accgttttat ccgtctgcgc aattagcgca tgtaaaaaag gctgtgcgtt
    18601 ctcatcgctc ttaccgggga tcttcacaat atacggcttc ccggtaatcg atgacgacga
    18661 agcaacctta tcaataaact gctcggcagt gtcaatgcgg ttacgggtat tgccgagctt
    18721 cagacgcaga tgagaaaccg cttcatcgca ggtatgttca tcaccgttgc gcacaaatat
    18781 caaatccttt ttctgtgata atccctccag catggcgttg atgcgggctt cttcatgggc
    18841 agttaacttc gcgtaagcgg ggagtgtcat tagtagtgta atgaccagac aaatgatttt
    18901 cttcattgaa ttaccttatc cttgttttgt aatagccgat ttgactgcca gaatcaggta
    18961 aagtttcggt tggaatacga tgaggatcat cggcaaggag aaaaaattaa atgagtagtt
    19021 tgttgttgtt taacgataag agcagggcgc tgcaggcgga tatcgtcgcc gtgcagtcgc
    19081 aggtggttta cggcagcgtg ggcaacagca ttgccgtgcc tgctatcaaa cagaacggtc
    19141 tgaatgtttt tgccgtgccg acggtattgc tgagcaatac gccgcattat gacactttct
    19201 acggtggtgc gattccggat gaatggttta gcggttattt gcgtgcgctt caggagcatg
    19261 atgcgctgcg ccagctgcgc gctgtaacca cgggctatat gggaacggca tcgcaaatca
    19321 aaatccttgc cgagtggctg actgcgctac gcaaagacca tcctgaccta ttgatcatgg
    19381 tcgatccggt gattggcgat attgatagcg gaatttatgt caaacctgac cttcccgagg
    19441 cgtatcgaca atatttactg ccgctggcgc agggaattac ccccaatatc tttgagctgg
    19501 aaatcctgac cggtaaaaat tgccgcgatc tcgacagtgc cattgctgcc gcaaaaagtc
    19561 tgctttcaga cacattaaaa tgggtggtga ttaccagcgc ctccggtaat gaagaaaatc
    19621 aggagatgca ggtggtggtg gtcagtgccg acagcgtgaa tgtcatttcc cattcacggg
    19681 taaaaaccga cctgaaaggg actggcgacc tgttttgtgc tcagcttatc agtggtttgc
    19741 tgaaagggaa ggcgttaaac gatgcggtgc accgtgcggg gttgcgcgta ctggaagtga
    19801 tgcgctacac ccagcagcat gagagcgatg aattgatttt gccgccgctg gcggaagcat
    19861 aaaaaatggc gccgatggg
//
LOCUS       DAJVUN010000067        19873 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.067, whole genome shotgun sequence.
ACCESSION   DAJVUN010000067 DAJVUN010000000
VERSION     DAJVUN010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19873
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.067"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(24..371)
                     /locus_tag="OQQ76_002019"
     CDS             complement(24..371)
                     /locus_tag="OQQ76_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease family protein"
                     /protein_id="HCS1968522.1"
                     /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV
                     HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN
                     PFADLKAMMNKTK"
     gene            complement(500..1471)
                     /gene="secF"
                     /locus_tag="OQQ76_002020"
     CDS             complement(500..1471)
                     /gene="secF"
                     /locus_tag="OQQ76_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HCS1968523.1"
                     /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR
                     GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE
                     GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVY
                     VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
                     DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT
                     MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
     gene            complement(1482..3329)
                     /gene="secD"
                     /locus_tag="OQQ76_002021"
     CDS             complement(1482..3329)
                     /gene="secD"
                     /locus_tag="OQQ76_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HCS1968524.1"
                     /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA
                     ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA
                     LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
                     KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR
                     LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
                     ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
                     EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
                     INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
                     EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA
                     GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII
                     LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI"
     gene            complement(3357..3689)
                     /gene="yajC"
                     /locus_tag="OQQ76_002022"
     CDS             complement(3357..3689)
                     /gene="yajC"
                     /locus_tag="OQQ76_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HCS1968525.1"
                     /translation="MSFFISDAVAATGAPVQGSPMSLILMLVVFGLIFYFMILRPQQK
                     RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL
                     PKGTMKAL"
     gene            complement(3712..4839)
                     /gene="tgt"
                     /locus_tag="OQQ76_002023"
     CDS             complement(3712..4839)
                     /gene="tgt"
                     /locus_tag="OQQ76_002023"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HCS1968526.1"
                     /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE
                     EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
                     KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
                     MSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVG
                     EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
                     LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
                     LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD"
     gene            complement(4895..5965)
                     /gene="queA"
                     /locus_tag="OQQ76_002024"
     CDS             complement(4895..5965)
                     /gene="queA"
                     /locus_tag="OQQ76_002024"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HCS1968527.1"
                     /translation="MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT
                     DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
                     PGAELLLGDDESINATMTARHGALFEVEFNDDRSVLDILNSIGHMPLPPYIDRPDEDA
                     DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD
                     TIEDHIMHSEYAEVPQDMVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF
                     FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF
                     FSYGDAMFITYNPQAINERVGE"
     gene            6058..6639
                     /gene="acpH"
                     /locus_tag="OQQ76_002025"
     CDS             6058..6639
                     /gene="acpH"
                     /locus_tag="OQQ76_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HCS1968528.1"
                     /translation="MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHM
                     HRRIDVLTDNLPEVREAREWFRRETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFI
                     CYARKQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALR
                     DSWYDLNAHYTALETRFWQFYPRMMAQASHKAL"
     gene            complement(6644..8366)
                     /gene="malZ"
                     /locus_tag="OQQ76_002026"
                     /pseudo
     CDS             complement(6644..8366)
                     /gene="malZ"
                     /locus_tag="OQQ76_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706291.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin glucosidase"
     gene            complement(8522..9895)
                     /gene="proY"
                     /locus_tag="OQQ76_002027"
     CDS             complement(8522..9895)
                     /gene="proY"
                     /locus_tag="OQQ76_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline-specific permease ProY"
                     /protein_id="HCS1968529.1"
                     /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV
                     LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV
                     AIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI
                     IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII
                     GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH
                     MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT
                     VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK
                     ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD
                     RQLAENQ"
     gene            complement(9971..11290)
                     /gene="brnQ"
                     /locus_tag="OQQ76_002028"
     CDS             complement(9971..11290)
                     /gene="brnQ"
                     /locus_tag="OQQ76_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter carrier
                     protein BrnQ"
                     /protein_id="HCS1968530.1"
                     /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
                     AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT
                     ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
                     ILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
                     TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG
                     GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS
                     QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF
                     SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH"
     gene            complement(11697..12992)
                     /gene="phoR"
                     /locus_tag="OQQ76_002029"
     CDS             complement(11697..12992)
                     /gene="phoR"
                     /locus_tag="OQQ76_002029"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HCS1968531.1"
                     /translation="MLEWLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI
                     WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
                     GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD
                     FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
                     LTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNE
                     KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP
                     EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA
                     IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD"
     gene            complement(13050..13739)
                     /gene="phoB"
                     /locus_tag="OQQ76_002030"
     CDS             complement(13050..13739)
                     /gene="phoB"
                     /locus_tag="OQQ76_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate response regulator transcription
                     factor PhoB"
                     /protein_id="HCS1968532.1"
                     /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE
                     PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY
                     ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEF
                     KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV
                     RGTGYRFSTRF"
     gene            13929..15131
                     /gene="sbcD"
                     /locus_tag="OQQ76_002031"
     CDS             13929..15131
                     /gene="sbcD"
                     /locus_tag="OQQ76_002031"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HCS1968533.1"
                     /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII
                     VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT
                     TVVASAGHAPQILPRRDGTPGAVLCSIPFLRPRDIISSQAGLNGIEKQQHLLAAITDY
                     YQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI
                     ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT
                     QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVE
                     VLLVRRSHEQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLH
                     TLAGEHEA"
     gene            15128..18271
                     /gene="sbcC"
                     /locus_tag="OQQ76_002032"
     CDS             15128..18271
                     /gene="sbcC"
                     /locus_tag="OQQ76_002032"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcC"
                     /protein_id="HCS1968534.1"
                     /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT
                     TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR
                     NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA
                     FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQV
                     QSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKA
                     QPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHA
                     AKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHA
                     EQKLNALAAITLTLTADEVATALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLMVTIQ
                     NGSLEQTQRNVALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL
                     CGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENE
                     AQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHERQLRLLSQRHELQGQ
                     IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQN
                     ELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQD
                     VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRSQAQT
                     LVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDA
                     DNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQL
                     TRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSH
                     KTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK
                     KINGLGYSKLESTFAVK"
     gene            18397..19581
                     /gene="araJ"
                     /locus_tag="OQQ76_002033"
     CDS             18397..19581
                     /gene="araJ"
                     /locus_tag="OQQ76_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414930.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter AraJ"
                     /protein_id="HCS1968535.1"
                     /translation="MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMI
                     SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG
                     FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
                     LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAW
                     FSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIV
                     LALLMLFFCGGMKTTSLIFAFICCARLFALSAPLQILLLQNAKGGELLGAAGGQIAFN
                     LGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP
                     LG"
     gene            complement(19724..>19873)
                     /locus_tag="OQQ76_002034"
     CDS             complement(19724..>19873)
                     /locus_tag="OQQ76_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308471.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HCS1968536.1"
                     /translation="MSNVDRLYQTVPQLIKQFVFGGECETPVRKAKHGDSSGVRGAAW
                     LWPQE"
BASE COUNT         4989 a         5419 c         5000 g         4465 t
ORIGIN      
        1 catcaggcaa ttttacgttt taatcacttc gtcttgttca tcatcgcttt caggtcagcg
       61 aatgggttgt acttcgcttc accgacatct ttctgcgcat cttcccctgc gataacggtc
      121 gtaccatact gatccgcttc ggtatatttc gaatgctcat gatcgtggca atagagacaa
      181 agcaattccc agttactgcc atcttccggg ttattggtat ggtcgtgatc aatgtggtga
      241 acggtaagtt cacgcaggtt ggaataaaca aactcgcggg aacagcgacc gcagacccac
      301 ggatatattt ttaatgcttt ttcgcgatag ccgctttcta accgcgcata gttttttggg
      361 atgatagcca tgaagagtta cctggatgaa atgtagggtt acgcgcagtt tcccaagatg
      421 cggggatttt cgcaatctcc atacatcaaa aaaaatcccg atcttctgac cgggattttc
      481 aacatcaacg ggaacttgat tacggcagaa ttgacggctg atccgcccct tctttttcca
      541 ctttctgctg caacatgtgt tcgcgcttca tacccagttt cagagccaac gcagatgcca
      601 catagatgga agatgcagta ccgatggaaa caccgataag catggtcagc gagaagcctt
      661 ccagtaccgg accaccgaag aggtacagca tcaggataac catcaaggta gtaccggatg
      721 tgatcaaggt acggtgcagc gtctgggtca aggacacgtt aaagatttcg taaggcgtac
      781 cgcgacggat cttgcggaag ttttcacgaa tacggtccga taccacgata ctgtcgttaa
      841 gcgagtaacc gataaccgac atcaacgatg ccacaatggt caggtcaatc tcgatatgga
      901 ataacgacaa aatacccagc gtaatgataa cgtcgtgcgc cagcgcaata acaacccctg
      961 ccgccagtcg ccactcaaag cgaaaaccta cgtacacaag gatagacagc agcgccgcca
     1021 tcaacgccat cgcaccggtt tgcgcaaggt ctgcccccac gctcggaccg acgaactcaa
     1081 tacgcttcac tgctgcattc tgattggtgg attcgttaat caccttcaga acctggctgc
     1141 ccagcacctg accgccggtt tcgccttcag caggcggcat acggaccatg atgtcgtggc
     1201 tgctaccaaa gttttgcagc attggctctt caaaaccggc tttttgcaat gcatcacgca
     1261 ttacgtcaat ttcagccggt ttttcgagcg taatttcgat aaccgtacca ccggtgaaat
     1321 ccagccccca gttaaagccg cgcacgccca taataacgat agcggcgatt aacagcagac
     1381 cagagatgcc gaaagcccag tagtcccagc gcataaagtc atagacttta cggccgtggt
     1441 ttagttgttc aacagtatat tcctgtgcca catcgcactc ctcagattga cagcttcttg
     1501 acgcgcttgc cgccatatag caggtttacg atggcacgcg taccgacaat cgcggtaaac
     1561 atcgacgtcg ccacaccgat accggtagta atcgcgaacc ctttaattgc cccggtaccc
     1621 actgcgtaca ggatgatgac tttaatcagc gtggtgatgt tcgcatcgaa gatagaactg
     1681 aatgcgccac gataaccttc atcaattgcc tgttgaacag tacgtccgtt gctcaactct
     1741 tctttaatac gttcgttgat cagtacgttc gcatcgaccg ccaccgcaag ggttaagacg
     1801 atacccgcga tacctggcat actcagcgtt gcgcctggca acagcgacat aatgccgacg
     1861 attaagatca agttggcaat cagagcactg gtcgcaatca gaccaaactt cttatagaag
     1921 atgatcatga acagaataga aaccagcaga ccggcaaggc aagcctccag cccctgttca
     1981 atgttctgca tacccagggt tgggccaatg gtacgttctt caacaatctg aatcggcgcg
     2041 atcaacgcac cggcacgcag cagcagtgac agctgacggg cttcgttcgg gttgttgatg
     2101 ccggtgatac ggaagctgtt acccagacga gactggatgt tggcgatgtt aatcacctct
     2161 tcctgtttca ccagaaccgc acgaccattt gcatctttct taccgctgtc tttgtactcc
     2221 acaaacaggg ttgccatcgg tttgccgatg ttgtccttag tgaagttaga catgatgtta
     2281 ccaccagcgc tatcgagcga gatgttaacc tgcggttggt tgtattcgtc ctggctggaa
     2341 gtggagtcgg tgatatggtc accggtcaga attacgcgtt tgtacagcac aactggctga
     2401 ccttcgcggg tctgtttcac ttcagagtcg cccggtacgc gaccggatgc cgcagcggcc
     2461 tggtcaacgt tggtgtttac cagacggaat tccagcgttg ccgtcgcacc cagaatctct
     2521 ttcgcacgcg cagtgtcctg aatacctggc agttcaacaa cgatacggtc agcaccctga
     2581 cgctgaacca ccggctccgc tacgccaagt tggtttacac ggttacgcag gatattgatg
     2641 ttctgctgca ccgcatattc acgcgcttca ctcagacgag catcgctcat taccgcacgc
     2701 agctggttgc tgccctggct actaatcacc aagtccggat ggcgcttgct cagatacgca
     2761 atggcttcat cacgagcttt agcatcgcgg aaagtaatgc tcaggccgta gttgttttct
     2821 ttacgaacgg tggtatacgg gatgcccttt tcacgcagat cgctgcgcag gctatcgata
     2881 ttttgttcct ggagtttgcc aagcgcggtg tccatatcca cttccatcag gaagtgaacg
     2941 ccgccacgca ggtcaaggcc gagcttcatc ggctcagcgt gaatagctgc cagccagcgc
     3001 ggcgttgccg gggcaaggtt aagcgccacg acgtatttgt cacccataac gcccattaat
     3061 gcttcacgag cgcgcagctg ggtgtcagtg gagtcgaagc gcgcaagaat agcgccctct
     3121 tccagtgcca cagacttagc agttattttt tcttcttgta acgttttctg gacctggatc
     3181 agcgtttgct cactggcggc gactccgcgc gcaccagtga tctgaacagc cggatcctca
     3241 ccaaacaggt tgggaagcgc atacagcaga ccgatgacaa tcaccacgat cagcatgacg
     3301 tacttccaca aaggataacg gtttaacacg gcaattccct tagggaaaaa ttttaattac
     3361 agcgccttca tggtgccttt cggcaggacg gcagctacga agtcacgttt aataactact
     3421 tcagtggtgt cattcagcgc gatagcaatg tagccgtttt ccgctacttt ggttacgcga
     3481 ccaaccaggc caccgttcgt cagaacttca tcacctttgg caatggagtc catcagcttt
     3541 ttgtgttctt tggtgcgctt ctgctgtgga cgcaggatca tgaaatagaa aatcagaccg
     3601 aataccacca gcatcaaaat caaagacatc gggctacctt gcaccggtgc acccgttgcc
     3661 gctaccgcat cagaaataaa aaagctcatt aaatttccct cattattaat attaatcaac
     3721 gttcaaaggt ggtacttctc gcccctgacg ctggtaaaaa tcagttacga agctctctaa
     3781 tttaccctct tcaatagcct tgcgtaaacc cgccatcaaa cgctggtagt aacgaaggtt
     3841 atgaatggtg ttgagtcgcg cgcctaatat ttcgttgcaa cggtcaagat gatgcaagta
     3901 agcgcgtgaa taattgcgac aggtgtagca atcacactca ggatcgagtg ggccagtatc
     3961 gctcttatac ttcgcattgc ggattttcac cacgccatcg gtcacgaaca aatgaccatt
     4021 tcgggcgttg cgggttggca ttacgcagtc aaacatatcg ataccacgac gtacgccttc
     4081 aaccaggtct tctggtttac caacgcccat caggtaacgc ggtttgtctg ccggaatttg
     4141 cgggcataca tgctccagaa tgcggtgcat atctgctttc ggctcaccca cagccagacc
     4201 gccgacagcg tagccatcaa aaccgatatc taccagacct ttaacagaaa tatcacgtaa
     4261 atcttcgtaa acgctgccct gaatgatacc aaacagcgca tttttgtttc cgagactgtc
     4321 aaaacgctca cggctacgct tcgcccaacg cagagacatc tccatggagc gttttgcgta
     4381 atcccagtca gcaggatacg gcgtacactc atcaaagatc atgacgatat ccgaaccaag
     4441 atcgtactga atctccattg atttttcagg atcgaggaaa atcggatcgc cgttgatcgg
     4501 gttacggaag tgcacgccct gttcggtgat tttacgaata tcgccaaggc tgaagacctg
     4561 gaagccgccg gagtcggtga ggatcggccc cttccactgc ataaaatcgt gcagatcgcc
     4621 gtgcagtttc atgatttcct ggcccgggcg cagccacagg tggaaggtgt tgccgaggat
     4681 aatttgcgcg ccagtggctt caacttcttc cggcgtcatc ccttttacgg tgccgtaggt
     4741 gccaacaggc ataaaacaag gcgtttccac tacgccacga tcaaagacca ggcggccacg
     4801 gcgtgcgcga ccgtcggtgg tgtccagttc aaatttcatt ttttctccac tacgtcagaa
     4861 aaacagtcca acgttttaaa ccagcgccgc ggaattactc cccgacgcgc tcattaattg
     4921 cctgcggatt gtacgtaata aacatcgcat caccgtaact aaaaaagcga tatttctctt
     4981 ctaccgctgc tttataggcg ttcatggtgt gttgataacc ggcaaaggcc gaaaccagca
     5041 taatcagcgt cgactctggc aagtggaagt tcgtcaccag cgcatcgacc actttgtact
     5101 ggaagcccgg atagataaag atttgggtat cgtcgaagaa cggttcaatg agatcgtttt
     5161 tcgctgcctg agccgcgctt tccagcgaac gtactgaagt ggtgccaacc gcaatcaccc
     5221 ggttaccgcg cgctttcgcc gccagtaccg cgtctaccat atcctgcggt acttcagcgt
     5281 attccgagtg catgatgtga tcttcaatgg tgtcgacgcg caccggctgg aaggtgcccg
     5341 caccaacgtg caacgtcaca aacgccatct ccacgccttt ggcgcgcaat ttttccagca
     5401 aaggctcgtc aaaatgcaga ccagcggtcg gggctgcaac cgcgcccggt ttttcgctat
     5461 aaacggtttg ataaagttcg cggtcagcgt cttcgtccgg acggtcgata tacggcggca
     5521 gcggcatatg gccgatactg ttgaggatat ccagtaccga acgatcatca ttgaattcga
     5581 cttcaaacag tgcgccgtgg cgcgcggtca ttgttgcgtt aatactttcg tcatcgccca
     5641 gcagcagttc tgcgccaggt tttggcgctt tcgaggcgcg aatatgcgca agaatgcgtt
     5701 tgtcgtcgag catccgctca accagcactt caatcttgcc gccgctggct ttacgcccaa
     5761 acaggcgcgc cgggatcacg cgagtattat taaaaaccag aagatcaccg gggttgagct
     5821 tatcgagtaa atcggtgaaa gtaccgtgcg tcagcgcgcc cgtaggcccg tccagcgaca
     5881 gtaaacgaca gctactgcgt tcaggcatgg ggtagtgggc aatcagggat tcgggcaatt
     5941 caaaggagaa atcggtaacg cgcatgacac tgactcagac taaaataaga ggcgggtagt
     6001 ctagtgccgg ggcgctctcc ctgcaacctt tacccccctt tggatagaat ataatcgatg
     6061 aattttttag ctcacctgca tttagcccat ctcgcggaaa gctcgctttc cggcaattta
     6121 ctggctgatt tcgtacgcgg aaatcctgaa gaaagttttc cgcccgacgt cgtggctggc
     6181 attcatatgc atcgacgtat cgacgtattg actgacaatc tgccggaagt ccgcgaagca
     6241 cgggagtggt ttcgtcgtga aacgcgccgc gttgcgccta ttacgctgga tgtcatgtgg
     6301 gatcactttc tttcccgcca ctggtcgcag ctgtcgccgg actttccgct acaggaattt
     6361 atctgttatg cccgcaagca agtgatgacg attttgccgg actcaccgcc acgttttatc
     6421 aatctaaaca attacttgtg gtcagagcag tggctggtgc gctatcgcga tatggatttc
     6481 atccagaacg tgttaaacgg catggcaagc cgtcgcccac gtctggatgc cctgcgtgac
     6541 tcctggtacg atttaaacgc ccattatacc gccctcgaaa cccgcttctg gcagttttat
     6601 ccgcggatga tggcgcaggc gtcacacaag gcgttataaa acgttagttc atccataccg
     6661 tagccgaaat ggcaggcaaa gccagaatcc cgtcagtcag ttgcccatgc ccttctttgc
     6721 attgccattg cacggcattg agaaacggtg acgcgggtag caccacttca caggcctcgc
     6781 cacggttgat tgccaccagt acacgttgct gattcagcac gcggacaaat accactacgt
     6841 tatcttccgc atacagcacc tgacagccgc cacgacgcag cgcctgactt ttcttacgca
     6901 gcacaatcat tcgccggtac agcgcgaata acgccgtatc ctgcttttcc acctgccagg
     6961 ggaacggttt acggcaaaac ggatcgtttt taccatccag tcccacttca tcaccgtaat
     7021 aaatgcacgg tacaccaggc caggtgaaca gccagaccac cgccagcggc aggcgcgcaa
     7081 tatcccgacc gagcagcgtt ttaaatcgcg cagtatcgtg gctgtcgagc tgattaaaca
     7141 tacgtaattg ttgttgatga gaaagccctg cgcggtaatt atccatccag gccatacagg
     7201 tttgggcatc aatttactgc ggatcgtaag agatatcggt attggcaaga aatccccaca
     7261 acgggaatgt gaagccacga tagttcatgg cggcatcttc cacatcggcc tgtaaccatt
     7321 gccgtgcatc gccaaaatgt tcgccgacaa tatacgcttc cggctgggtt tctttcgccg
     7381 cttcggtgat cccagcaacg tgctgcatat tattgcgcgc cccacccgcc tcccccagca
     7441 tatgcaccac atccagccgc cagccgtcca tactccacgg cgctttcagc caatggcgga
     7501 caatactgtc ttccccgcga taaatttcat tcaccagact ttccgactga taatccagct
     7561 tcggcaagct ggcatagcca agccagtcga gcgccgtgcc atcatcacta aacgagtacc
     7621 agtcgcgcca gggcgattca gggttgtgac aagctccccc cgtgccacga ttgtgcctgt
     7681 caaaccaggc atgggaatcg ccactgtggt taaacacgcc gtccagcacc agccgcattc
     7741 ccagctgctg cgtattgtgt cgcaaacgca gcaacgcccc atcaccgcca aactgcggat
     7801 cgacatggcg ataatcctcg gtatcgtatt gatgtacgct gggagcttta aacaccggat
     7861 tgagatacag cgctgtcacg ccaagctttt tcagatacgg cagtttttcg cttatcccgt
     7921 ccagatcgcc gccatagaac gttgatctgc ccgcctgcgc cgtgaccggt tcatcccagt
     7981 cacgcaagat gatctcttgt ccggctgcat gatggtaata gacatgatcc tattcagctt
     8041 cacgaggaag actacgcgca aaacgatcag ggaagatctg ataaaaaatc tgatccgcag
     8101 cccattgtgg gccgatatcc ggtacatcga cggcaaactg ctccagtcgt gccggcggca
     8161 ttcggctgaa gccctgcggt gacgcctggc tgcggctgac tgcgctgctt atgcattggt
     8221 actgacattt cttcgttatc gtgttctgta cgcagcataa tgcgctgcgg tgggtcttcg
     8281 cccgtcagcc acagtgtaat gagcagttga tctttgcttt gtttaacaaa tgggggcacc
     8341 ggcaggtgcc atgcatttaa catcataatt cccctgtgat gaaaatctga tcaccttgcc
     8401 atagcctaat gcaggatcac tcatcatctg aaggatattt gggggaggag gacgggggcg
     8461 gataactttc ggaatagccg gatcaggatt tcctcctgaa ccggcttaca gaacgcaagg
     8521 attactggtt ttcagccagc tgacgatcgt ggcgacgctt aaacatccag ccaatcaaca
     8581 gcacaacaat ccacgcgaaa ccgacataca gcgagatacg cgtatccggg tgataaccaa
     8641 tcaacccgat aataaagagc aggaaaatca gcccgccgat ggtcgttgct accccacccg
     8701 gcactttaaa tttcagcgcc ttaacttctt ctggcggcaa acggcgacgg aaggcgattt
     8761 gcgacagcag gatcataatc cacacccata ccgtggcgaa ggttgccagc gaagcgatca
     8821 ccaggaagac gttttccggc atgatgtagt tcagatacac cgcaaacagc agcgcggtag
     8881 tcatcaccag caccgtaacc cacggaatac cgcgacgcga cgttttgctg aaaattttcg
     8941 gtgcgctgcc ctgctctgcc ataccgtgga gcatacggcc tacgccaaat acgtcactgt
     9001 taattgccga cagcgaagcg gtcagcacaa caaagttaag aatgctggcg gcaaaggtaa
     9061 tgcccatatg ctggaacgtc agcacgaacg ggctaccggc agtgccaacc tgattccacg
     9121 ggtagataga cataatgacg aacagcgtac cgacgtagaa caccagaata cgcatcggca
     9181 cggagttaat cgcacgcgga atcgatttct caggatcttt cgcttcaccg gcggtaatcc
     9241 cgataatttc gatcccaccg taagcaaaca tcaccatttg caacgacatt accatgccaa
     9301 gccagccgtt actgaagaag ccgccgttgc tccacaggtt atgaataccg gtcggttgcc
     9361 cgccgttgcc aatcccccag atgatgatgc cgaaaccggc gacaatcatg atgatgatgg
     9421 tggcgacttt aaagaacgag aaccagaatt ccagctcacc gaataccttc acgctcatca
     9481 ggtttacggc gcaaatgatc agcaccacgc tcagtaccca aatccagtgc ggcaccgtcg
     9541 ggaaccagac acccatatag ataccaaaag cggtcacatc ggcgatggcg acaattagga
     9601 tttcaaagca gtaggtccag ccggtaatgt aacctgccag cgggccgagg ttttcctgcg
     9661 cataacgcga gaaagagctg gcggccgggt tatgtaccga catttccccc agcgcacgca
     9721 taatgatata cgccgcgata ccaccgataa tataggccaa caacacgctc ggaccggcca
     9781 ttttgatggc gtctgccgaa ccgtaaaaca gcccggtgcc aattgctgaa cccagtgcca
     9841 taaagcgtat gtggcgggta cttagcccac gctttagctt gttcttactt tccatcaatt
     9901 cctaacccat caacacaata aaaaaccacg gggcatcgca gccccgtggt taaaacaaat
     9961 gttcagtgat ttagtgagcg ctggaggtca cctgacgacc tgccgcgcga tcccagataa
    10021 tggccagaac caccatcacc actgttggca ttaaccacgc caggccttgt tcggccagcg
    10081 gtaaacgctg cgcccaggac ggtaagatat cgctgaatgc agatgctttg atcccgtcga
    10141 gaataccaaa aagcaggctg ataaacatcg gcggggcaat cacgcgggac gaattatgcc
    10201 accatgagcg tgtaaaactt aatacaacca gtgcgataca cggcggataa atagcggtca
    10261 gcaccggtac ggagatctgg atcagctggc ttaagccgag gttagacacc accatcgaga
    10321 agccgccgag gataaacacc agcgtacgat aagagagcgg tacgtactgg gcaaagaatt
    10381 ctgcacaagc acaggtcagg ccaactgccg ttaccaggca ggcgatgaag attaacgccg
    10441 ccagcaggaa gctaccgccg ccgccaaatg tgtgctgaac gtaagcatgc agaatagcag
    10501 cgccgtttgc agactgatcg accagcgacg cgctgtctga acccagacgg aacagcgcca
    10561 ggtacagcag agtcagacca acacccgcca tcaggccagc ccagacggta taacgggtca
    10621 gcagacgcgc ttcggtaacg ccacgagaac gcgccgcgtt aacaataacg ataccaaaca
    10681 ccattgcgcc cagcgtatcc atggtcagat agccgttaac gaagccgtta gaaaacgcag
    10741 cgttttgata agcctcagtc gccgtgctga tagaacccgc cggccagaca atagcggcaa
    10801 cagacaggat gaccagcgcg ataattttca gcggcgcaag gaagttgccc acggtatcca
    10861 gcagcttgcc cggatagagc gaaaccagaa taacgatagc gaaatagacc aggctgtaga
    10921 taaacagcgg cagcgcggaa tcacccgtca gcggcgcaat ccccacttca aaggaaacgg
    10981 tagctgtacg cggcgtagcg aaaagcggcc ccaccgccaa gtaacaaaca gttgccagca
    11041 gcacgccagc gactttaccg attggcgtgc tgaggctgtc aacaccgccg ccaacttttg
    11101 ccagcgccac taccgttaat accggcaggc caacggcagt aatgaggaag ccgaatgccg
    11161 cagtccagac gtgttcgcct gcctgcaagc cgaccattgg agggaaaata atgttacctg
    11221 cgccgacgaa caacgcaaat gtcataaagc ccagagcgat gatatcgcgc gatcttaatt
    11281 gatgggtcat aaatcatact gcctgtggat gtggtgttgt aacgttaaat ttttgtgcca
    11341 atacctgggg atgatacagc ggtatattta aacaatttta gcgggaaata ctcccaacca
    11401 ggcgcggcga agaatagttt ttcgatttac cgcgttaatg cagtcagtat gacagcacct
    11461 gaagcgcaat ttaaacgctt ataacgtttt aaagcaagga gggatctaaa aaccagaggt
    11521 atatagcgat aagaaatcac caaccagtat aaaacactat ttccgtgaaa aagacatggc
    11581 taatcatgcg aacaaaaaat caccaaccgt tgtaaaatct aacgcccgta ttttgactgc
    11641 aaagaaaata agccagcatc gactggctta tggcaataaa agatgacaaa ggcggattaa
    11701 tcgctgtttt tggcaattaa acgttccggg ataacaaaac tgaaacgtgt tccttttcct
    11761 actgtactct caatattcag gcgactttcg tgatgattca cagcatgttt cacgatcgct
    11821 aaccctaatc cgctaccgcc ggtttgccgg gaacgcgctt tatcaacgcg ataaaaacgc
    11881 tcggtcaggc gcggaatatg ctccggtgca atgcccggtc cgttatcttc aacgctaaat
    11941 tcggcaccgt gcggcactcg ctgccagcgt acggtgatat gcgtgccttc tggagtatga
    12001 ttcacggcgt tatagaccag gttcgaaatc gcactgcgta gctgatcttc gttgccagac
    12061 actttgaggc cgttatctat ctcaaaggta aatgtctgtt ttttctgact cagagtctga
    12121 gcctcgcgct caacaacgcg cagcatcatc ggcacatcaa ccttttcatt gagcaattgc
    12181 gtcggcgcgg cttcaatttt cgacagcgtt agcaactgct tcaccagccc ttccatccgc
    12241 tgggtctgct cgcgcatggt gtgcaacgct ttttcgcgta ccgcgccttc cagcggctgc
    12301 tcatccatca tctccaggta accctgtaac acggtcaatg gcgtacgtaa ctcatggctc
    12361 acgttggcaa aaaagttacg ccgcgcccct tccagttgat gcatttgcgt gacatcacgc
    12421 gccaccatca gcaactgttt gtgggtataa ggcatgacgc gaatttccag atgccgcccg
    12481 gtgttgagca ccagattgag cgggcgagaa aaatcacgcg ttttcagata ttgcgtaaac
    12541 tccgggtaac gcagtaggtt aaggatgttc tgcccgttat cttccggcca gcgcaaacca
    12601 agaatttgtt gcgccagacc gttacaccag aaaataccgc cctcttccgt ggtcagcacc
    12661 accgcgtcgg gcagcgactc cgcgccgcta cgaaagcgtt taatcagatt gcccagttca
    12721 cggcggcgtt ttttatttcg cagctgcatc tggtgtaagc cgtatagtag cggttcccag
    12781 ctaccacgcc ccggtggcgg ggtcatactg cgatccaccc acaaccacca tgaaaggcgc
    12841 aataaattcc agaaatgcca gataagcagt cctgttaccg atgccagcaa aaaccagggc
    12901 aggtaaccaa aaaatgcacc caggatgaaa gccgggaggc agcaaagtag cagctccagc
    12961 accagccttt tccacgacag ccattccagc acgtaagata ctccagttaa gaaatcataa
    13021 gccctgctct gcgtccgatg agcaaggcgt taaaagcggg ttgaaaaacg atatcctgta
    13081 ccgcgcacgg tctgcaccat gcggtcatgc ccgccgggct ccagtgcttt acgcaggcga
    13141 cgaatgtgga catcgaccgt gcggtcttcc acatacacgt tagttcccca gacgtggttt
    13201 aacagctgct cgcggctgta cacgcgctca ggatgcgtca taaaaaagtg cagcagttta
    13261 aattctgtcg gccccatctc cagcggctct tcgcccgcca tcactcggtg agatgtcggg
    13321 tcgagactta atccctgcat ctcaatcacc tcttccaccg ccattggcga aatacggcgc
    13381 attaccgctt tgattcgcgc caccagctcc ttcggcgaaa acggcttggt gatatagtca
    13441 tccgcgccgg tttcaaggcc gcgcacgcga tcttcttctt cccctctggc ggtcaacatc
    13501 accactggaa tatcccgggt catcgactcg cgcttgaggt gtttgatgaa ctggataccg
    13561 gagccgccag gtaacatcca gtcaaggaga attaaatccg gccagggttc attcagttga
    13621 ttcacagcac tgtcataatc ttccgcttcg accggctgaa agccattttg ttcgagcacg
    13681 aagcagacca tttcgcgaat tggagcttca tcttctacga ccagaatacg tctcgccatg
    13741 atttgccctg ttgtaataaa taggttgcga tcattaatgc gacgtcatta tgcgtcagat
    13801 ttatgacaga tttatgaaaa gctcgtcgca catatcttca ggttattgat ttccgtggcg
    13861 cagaaaaaag caaatggcac atctgtttgg gtataatcgc gaccatgctt tttcgccagg
    13921 gaaccgttat gcgcatcctt cacacctcag actggcatct cggccagaac ttctacagta
    13981 aaagccgcga agctgaacat caggcttttc ttgactggct gctggagaca gcacaaaccc
    14041 atcaggtgga tgcgattatt gttgctggtg atgttttcga taccggctcg ccgcccagtt
    14101 acgcccgcac gttatacaac cgttttgttg tcaatttaca gcaaactggc tgtcatctgg
    14161 tggtactggc aggaaaccat gactcggtcg ccacgctgaa tgaatcgcgc gatatcatgg
    14221 cgttcctcaa tacaaccgtg gtcgccagcg ccggacatgc gccgcaaatc ttgcctcgtc
    14281 gcgacgggac gccaggcgca gtgctgtgct ccattccgtt tttacgcccg cgtgacatta
    14341 tttccagcca ggcggggctt aacggtattg aaaaacagca gcatttactg gcagcgatta
    14401 ccgattatta ccaacaacac tatgccgatg cctgcaaact gcgcggcgat cagcctctgc
    14461 ccatcatcgc cacgggacat ttaacgaccg tgggtgccag taaaagtgac gccgtgcgtg
    14521 acatttatat tggcacgctg gacgcgtttc cggcacaaaa ctttccacca gccgactaca
    14581 tagcgctcgg gcatattcac cgcgcacaga ttattggcgg catggaacat gttcgctatt
    14641 gcggttcccc cattccactg agttttgatg aatgcggtaa gagtaaatat gtccatctgg
    14701 tgacattttc aaacggcaaa ttagagagcg tggaaaacct gaacgtaccg gtaactcaac
    14761 ccatggcggt gctgaaaggc gatctggcgt cgattaccgc acagctggaa cagtggcgcg
    14821 atgtatcgca ggagccacct gtctggctgg atatcgaaat cactactgat gagtatctgc
    14881 atgatattca gcgcaaaatc caggcattaa ccgaatcatt gcctgtcgaa gtattgctgg
    14941 tacgtcggag tcatgaacag cgcgagcgtg tgttagccag ccaacagcgt gaaaccctca
    15001 gcgaactcag cgtcgaagag gtgttcaatc gccgtctggc actggaagaa ctggatgaat
    15061 cgcagcagca acgtctgcag catcttttca ccacgacgtt gcataccctc gccggagaac
    15121 acgaagcatg aaaattctca gcctgcgcct gaaaaacctg aactcattaa aaggcgaatg
    15181 gaagattgat ttcacccgcg agccgttcgc cagcaacggg ctgtttgcca ttaccggccc
    15241 aaccggtgcg gggaaaacca ccctgctgga cgccatttgt ctggcgctgt atcacgaaac
    15301 tccgcgtctc tctaacgttt cacaatcgca aaatgatctc atgacccgcg ataccgccga
    15361 atgtctggcg gaggtggagt ttgaagtgaa aggtgaagcg taccgtgcat tctggagcca
    15421 gaatcgggcg cgtaaccaac ccgacggtaa tttgcaggtg ccacgcgtag agctggcgcg
    15481 ctgcgccgac ggcaaaattc tcgccgacaa agtgaaagat aagctggaac tgacagcgac
    15541 gttaaccggg ctggattacg ggcgcttcac ccgttcgatg ctgctttcgc aggggcaatt
    15601 tgctgccttc ctgaatgcca aacccaaaga acgcgcggaa ttgctcgagg agttaaccgg
    15661 cactgaaatc tacgggcaaa tctcggcgat ggtttttgag cagcacaaat cggcccgcac
    15721 agagctggag aagctgcaag cgcaggccag cggcgtcgcg ttgctcacgc cggaacaagt
    15781 gcaatcgctg acagcgagtt tgcaggtact tactgacgaa gaaaaacagt tacttaccgc
    15841 gcagcagcaa gaacaacaat cactaaactg gttaacgcgt ctggacgaat tgcagcaaga
    15901 agccagccgc cgtcagcagg ccttgcaaca ggcgttagcc gaagaagaaa aagcgcaacc
    15961 tcaactggcg gcgctcagtc tggcacaacc ggcacgaaat cttcgtccgc actgggaacg
    16021 catcgcagaa cacagcgcgg cgctggcgca tactcgccag cagattgaag aagtaaatac
    16081 tcgcttacag agcacaatgg cgcttcgcgc gagcattcgc caccacgcgg cgaagcagtc
    16141 agcagaatta cagcagcagc aacaaagcct gaatacctgg ttacaggaac acgaccgctt
    16201 ccgtcagtgg aacaacgaac tggcgggttg gcgtgcgcag ttctcccaac aaaccagcga
    16261 tcgcgagcat ctgcggcaat ggcagcaaca gttaacccat gctgagcaaa aacttaatgc
    16321 gcttgcggcg atcacgttga cgttaaccgc cgatgaagtt gctaccgccc tggcgcaaca
    16381 tgctgagcaa cgcccactgc gtcagcgcct ggtcgcgctg catgggcaga ttgttcccca
    16441 acaaaaacgt ctggcgcagt taatggtcac tatccagaat ggatctctgg aacagacgca
    16501 acgtaatgtc gcacttaacg aaatgcgcca gcgttataaa gaaaagacgc agcaacttgc
    16561 cgatgtgaaa accatttgcg agcaggaagc gcgcatcaaa acgctggaag cccagcgtgc
    16621 acagttacag gcgggtcagc cttgtccact ttgtggttcc accagccacc cggcggtcga
    16681 ggcgtatcag gcgctggagc ctggtgttaa tcagtctcga ttactggcgc tggaaaacga
    16741 agttaaaaag ctcggcgaag aaggtgcggc gctgcgcggg caactggatg cattaacgaa
    16801 gcagcttcag cgcgatgaaa acgaagcgca aagcctccga caagatgagc aagcacttac
    16861 tcaacaatgg caagccgtca cggccagcct caatatcacc ttgcagccac aggacgatat
    16921 tcaaccgtgg ctggatgcac aagatgagca cgaacgccag ctgcggttac tcagccaacg
    16981 acatgaatta caagggcaga ttgccgcgca taatcagcaa attatccagt atcaacagca
    17041 aattgaacaa cgccagcagc agctcttaac ggcattggcg ggttatgcac tgacattgcc
    17101 acaggaagat gaagaagaga gctggttggc gacacgtcag caagaagcgc agagctggca
    17161 gcaacgccag aacgaattaa ccgcgctgca aaaccgtatt cagcagctga cgccgattct
    17221 ggaaacgttg ccgcaaagtg atgatctccc gcacagcgaa gaaactgtgg cgctggataa
    17281 ctggcggcag gttcatgaac aatgtctcgc attacacagc cagcagcaga cgttacagca
    17341 acaggatgtt ctggcggcgc aaagtctgca aaaagcccag gcgcagtttg acaccgcgct
    17401 acaggccagc gtctttgacg atcagcaggc gttccttgcg gcgctaatgg atgaacaaac
    17461 actaacgcag ctggaacagc tcaagcagaa tctggaaaac cagcgcagtc aggcgcaaac
    17521 gctggtcact cagacagcag aaacgctggc acagcatcaa caacaccgac ctgacgggtt
    17581 ggctctcact gtgacggtgg agcagattca gcaagagtta gcgcaaactc accaaaagtt
    17641 gcgtgaaaac accacgagtc aaggcgagat tcgccagcag ctgaagcagg atgcagataa
    17701 ccgtcagcaa caacaaacct taatgcagca aattgctcaa atgacgcagc aggttgagga
    17761 ctggggatat ctgaattcgc taataggttc caaagagggc gataaattcc gcaagtttgc
    17821 ccaggggctg acgctggata atttagtcca tctcgctaat cagcaactta cccggctgca
    17881 cgggcgctat ctgttacagc gcaaagccag cgaggcgctg gaagtcgagg ttgttgatac
    17941 ctggcaggca gatgcggtac gcgatacccg taccctttcc ggcggcgaaa gtttcctcgt
    18001 tagtctggcg ctggcgctgg cgctttcgga tctggtcagc cataaaacac gtattgactc
    18061 gctgttcctt gatgaaggtt ttggcacgct ggatagcgaa acgctggata ccgcccttga
    18121 tgcgctggat gccctgaacg ccagtggcaa aaccatcggt gtgattagcc acgtagaagc
    18181 gatgaaagag cgtattccgg tgcagatcaa agtgaaaaag atcaacggcc tgggctacag
    18241 caaactggaa agtacgtttg cagtgaaata actattcagc aggataatga atacagaggg
    18301 gcgaattatc tcttggcctt gctggtcgtt atcctgcaag ctatcacttt attggctacg
    18361 gtgattggta gccgttctgg tggttgtgat gatggtatga aaaaagtcat tttatctttg
    18421 gctctgggca cgtttggttt ggggatggcc gaatttggca ttatgggcgt gctcacggag
    18481 ctggcgcata acgtaggaat ttcgattcct gctgccgggc atatgatctc gtattatgca
    18541 ctgggggtgg tggtcggtgc gccaatcatc gcactctttt ccagccgcta ctcactcaaa
    18601 catatcttgt tgtttctggt ggcgttgtgc gtcattggca acgccatgtt cacgctctct
    18661 tcgtcttacc tgatgctcgc cattggtcgg ctggtatccg gctttccgca tggcgcattt
    18721 tttggcgtcg gcgcgatcgt gttatcaaaa attatcaaac ccggaaaagt caccgccgcc
    18781 gtggcgggga tggtttccgg gatgacagtc gccaatttgc tgggcattcc gctgggaacg
    18841 tatttaagtc aggaatttag ctggcgttac acctttttat tgatcgctgt ttttaatatt
    18901 gcggtgatgg catcggtcta tttttgggtg ccggatattc gcgacgaggc gaaaggaaag
    18961 ctgcgcgaac aatttcactt tttgcgcagc ccggccccgt ggttaatttt cgccgccacc
    19021 atgtttggca acgcaggtgt gtttgcctgg ttcagctacg taaagccata catgatgttt
    19081 atttccggtt tttcggaaac ggcgatgacc tttattatga tgttagttgg gctagggatg
    19141 gtgctgggaa atatgctaag tggcaggatt tcaggacgtt attcaccact gcgcattgca
    19201 gcagtgactg actttataat tgtactggca ctgctgatgc tctttttctg cggcggcatg
    19261 aaaacaacgt cgcttatttt tgcttttatt tgttgcgcga gattatttgc cctttcagca
    19321 ccgctacaaa tattgttact acaaaacgcc aaaggcggag agttattagg tgccgcaggt
    19381 gggcaaatag cgtttaacct cggtagcgcc gtcggcgcat attgcggtgg tatgatgctg
    19441 acgctggggc tggcatataa ttacgtggcg ctgcctgccg ccctgctttc gtttgctgcg
    19501 atgtcgtcgt tgctgctgta tggtcgctat aagcgccagc aagcggcgga tactccggtg
    19561 ctggcgaaac cactggggta ggttatagtc tcggtgttca ttacttattg ccggatgcgg
    19621 cgtgaacgcc ttatccgccc tacgcggttc tggcacattt tgcaggcctg ataagacgcg
    19681 gcaagcgtcg catcaggcat gatgcgccaa ttgcctacgt tttttactct tgtggccata
    19741 accacgcagc gccgcgtacg ccgctggaat caccgtgctt cgccttacgc accggcgttt
    19801 cacattcgcc gccgaagaca aattgtttaa tcaactgcgg aaccgtttga tataaacggt
    19861 ctacattgct cat
//
LOCUS       DAJVUN010000068        19810 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.068, whole genome shotgun sequence.
ACCESSION   DAJVUN010000068 DAJVUN010000000
VERSION     DAJVUN010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19810
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.068"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(4..771)
                     /locus_tag="OQQ76_002035"
     CDS             complement(4..771)
                     /locus_tag="OQQ76_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1968537.1"
                     /translation="MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLE
                     QQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGT
                     TTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM
                     LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWL
                     ALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE"
     gene            967..1875
                     /locus_tag="OQQ76_002036"
     CDS             967..1875
                     /locus_tag="OQQ76_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCS1968538.1"
                     /translation="MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACAT
                     LKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSST
                     IASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAV
                     AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAG
                     NSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSAS
                     NAGYGKEDDSAVIKIFSGITLPGAKS"
     gene            1872..3133
                     /locus_tag="OQQ76_002037"
                     /pseudo
     CDS             1872..3133
                     /locus_tag="OQQ76_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649192.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
     gene            3130..3768
                     /locus_tag="OQQ76_002038"
     CDS             3130..3768
                     /locus_tag="OQQ76_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HCS1968539.1"
                     /translation="MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNL
                     LATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHST
                     WSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF
                     LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS"
     gene            3773..4549
                     /locus_tag="OQQ76_002039"
     CDS             3773..4549
                     /locus_tag="OQQ76_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HCS1968540.1"
                     /translation="MPRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYDYSTLQ
                     IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQV
                     HVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPDVKPHYLFSSQYQ
                     ALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGE
                     INYPWLFRLFDEVGYQGWIGCEYKTRGLTEEGLGWFDAWR"
     gene            4638..6002
                     /locus_tag="OQQ76_002040"
     CDS             4638..6002
                     /locus_tag="OQQ76_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family transporter"
                     /protein_id="HCS1968541.1"
                     /translation="MSTITLLYIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAG
                     IPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTI
                     AALTLAAFFLGIPVFFDVSFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPP
                     HPGPVATAGLLHADIGWLTIIGIAISIPVGIVGYFAAKIINKRQYAMSVEVLEQMQLA
                     PASEEGATKLSDKINPPGVALVTSLIVIPIAIIMTGTVSATLMPPSHPLLGTLQLIGS
                     PMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVES
                     GVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQC
                     VLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCV
                     WAVI"
     gene            complement(6096..7088)
                     /gene="rpoS"
                     /locus_tag="OQQ76_002041"
     CDS             complement(6096..7088)
                     /gene="rpoS"
                     /locus_tag="OQQ76_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000081498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HCS1968542.1"
                     /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEE
                     LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV
                     VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
                     QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER
                     ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR
                     RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE"
     gene            complement(7151..8242)
                     /gene="nlpD"
                     /locus_tag="OQQ76_002042"
     CDS             complement(7151..8242)
                     /gene="nlpD"
                     /locus_tag="OQQ76_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator NlpD"
                     /protein_id="HCS1968543.1"
                     /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP
                     ANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSY
                     SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
                     NAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTA
                     PVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAI
                     IATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMG
                     STGTSSTRLHFEIRYKGKSVNPLRYLPQR"
     gene            complement(8382..9008)
                     /gene="pcm"
                     /locus_tag="OQQ76_002043"
     CDS             complement(8382..9008)
                     /gene="pcm"
                     /locus_tag="OQQ76_002043"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HCS1968544.1"
                     /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA
                     WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCS
                     VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT
                     QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA"
     gene            complement(9002..9763)
                     /gene="surE"
                     /locus_tag="OQQ76_002044"
     CDS             complement(9002..9763)
                     /gene="surE"
                     /locus_tag="OQQ76_002044"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HCS1968545.1"
                     /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS
                     LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI
                     YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV
                     PDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD
                     EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW"
     gene            complement(9744..10793)
                     /gene="truD"
                     /locus_tag="OQQ76_002045"
     CDS             complement(9744..10793)
                     /gene="truD"
                     /locus_tag="OQQ76_002045"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HCS1968546.1"
                     /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI
                     LVRILKNGCNTRFVADALAKFLKIHAHEVSFAGQKDKHAVTEQWLCARVPGKEMPDLS
                     AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF
                     GAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ
                     VVDGDALQLAGRGSWFVATTEELAELQHRVNDKELMITAALPGSGEWGTQREALAFEQ
                     AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV
                     RELINTTGDYAHIAE"
     gene            complement(10790..11269)
                     /gene="ispF"
                     /locus_tag="OQQ76_002046"
     CDS             complement(10790..11269)
                     /gene="ispF"
                     /locus_tag="OQQ76_002046"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HCS1968547.1"
                     /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL
                     TDALLGAAALGDIGKLFPDTDPVFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA
                     PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK"
     gene            complement(11269..11979)
                     /gene="ispD"
                     /locus_tag="OQQ76_002047"
     CDS             complement(11269..11979)
                     /gene="ispD"
                     /locus_tag="OQQ76_002047"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HCS1968548.1"
                     /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA
                     LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWV
                     LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL
                     WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE
                     DLALAEFYLTRTIHQENT"
     gene            complement(11998..12309)
                     /gene="ftsB"
                     /locus_tag="OQQ76_002048"
     CDS             complement(11998..12309)
                     /gene="ftsB"
                     /locus_tag="OQQ76_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HCS1968549.1"
                     /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNA
                     KLKARNDQLFAEIDDLNGGQEALEERARNELSMTKPGETFYRLVPDASKRAQSAGQNN
                     R"
     gene            complement(12503..12826)
                     /locus_tag="OQQ76_002049"
     CDS             complement(12503..12826)
                     /locus_tag="OQQ76_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3561 family protein"
                     /protein_id="HCS1968550.1"
                     /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML
                     IYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF
                     MWLLG"
     gene            complement(12876..13481)
                     /gene="cysC"
                     /locus_tag="OQQ76_002050"
     CDS             complement(12876..13481)
                     /gene="cysC"
                     /locus_tag="OQQ76_002050"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HCS1968551.1"
                     /translation="MALHDENVVWHSHPVTVQQRELHHCHRGVVLWFTGLSGSGKSTV
                     AGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV
                     VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT
                     GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS"
     gene            complement(13481..14908)
                     /gene="cysN"
                     /locus_tag="OQQ76_002051"
     CDS             complement(13481..14908)
                     /gene="cysN"
                     /locus_tag="OQQ76_002051"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HCS1968552.1"
                     /translation="MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI
                     GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
                     STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI
                     KHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE
                     SMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQ
                     RVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAV
                     QSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNG
                     IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSA
                     FELELNALVRRHFPHWGARDLLGDK"
     gene            complement(14910..15818)
                     /gene="cysD"
                     /locus_tag="OQQ76_002052"
     CDS             complement(14910..15818)
                     /gene="cysD"
                     /locus_tag="OQQ76_002052"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HCS1968553.1"
                     /translation="MAQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML
                     HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP
                     FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP
                     KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE
                     RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNSQTLPEIIEEMLVST
                     TSERQDRVIDRDQAGSMELKKRQGYF"
     gene            16070..17107
                     /gene="iap"
                     /locus_tag="OQQ76_002053"
     CDS             16070..17107
                     /gene="iap"
                     /locus_tag="OQQ76_002053"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase isozyme conversion
                     aminopeptidase"
                     /protein_id="HCS1968554.1"
                     /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF
                     PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIA
                     AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKN
                     TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV
                     KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV
                     EATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIM
                     LPLVKELAKAS"
     gene            complement(17314..17607)
                     /gene="cas2"
                     /locus_tag="OQQ76_002054"
     CDS             complement(17314..17607)
                     /gene="cas2"
                     /locus_tag="OQQ76_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endoribonuclease
                     Cas2"
                     /protein_id="HCS1968555.1"
                     /translation="MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIW
                     QQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ"
     gene            complement(17607..18526)
                     /gene="cas1e"
                     /locus_tag="OQQ76_002055"
                     /pseudo
     CDS             complement(17607..18526)
                     /gene="cas1e"
                     /locus_tag="OQQ76_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311636.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endonuclease Cas1"
     gene            complement(18523..19173)
                     /gene="cas6e"
                     /locus_tag="OQQ76_002056"
     CDS             complement(18523..19173)
                     /gene="cas6e"
                     /locus_tag="OQQ76_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas6/Cse3/CasE"
                     /protein_id="HCS1968556.1"
                     /translation="MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPSGKERQ
                     FLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKA
                     GKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQ
                     LRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA"
     gene            complement(19155..>19810)
                     /gene="cas5e"
                     /locus_tag="OQQ76_002057"
     CDS             complement(19155..>19810)
                     /gene="cas5e"
                     /locus_tag="OQQ76_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cas5/CasD"
                     /protein_id="HCS1968557.1"
                     /translation="SRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWAR
                     DYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSL
                     EQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSL
                     PKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE"
BASE COUNT         4670 a         5384 c         4966 g         4790 t
ORIGIN      
        1 ccattattca tttttcgcta ccagcaaaga gagatcctgc ttcgccagcg cgcgactggc
       61 actctccggc aaaccgtcgt ctgtaataat ctgatcaaac tcgcttaatg gtaacgccag
      121 ccatgtcgcc acctgaccat atttcgtcgc atcacagacc aaaactcgct ggcggctggc
      181 actagcaatc gcccgtttca ccgtgacttt atcttccgct ggcgtagaaa tcccccgcac
      241 actccatgac gatgcagaaa taaaagcctg atcaatcatc aggctgcgca gcatggtcgc
      301 agcggcttcc ccgacacagg aacggttttc ccgacacact gcaccgccag tgtgaataat
      361 tgtgcaatta ctgttgtcga gcaagtagtt cgcaataacg aaatcgtttg tgaccacagt
      421 cagtgactcc atgtgaatca gatgctgtgc tatcgctaac gtggtcgttc ccgcatccag
      481 atagatacaa cttcccggct gaacaagact tgccgccagc ttgccaatag ccgctttttg
      541 cgtcattgcc agcgcagttt ttacctgatg agaaggttca tgcgccacgc gtcccggaga
      601 ctggacgcct ccggacacca gcacaacggc tccctgctgc tccagttttt gtaaatcccg
      661 acgaatggtc atatgtgaca cattcattct gtccgttagt tcagcaatac tgacaatgcc
      721 tttttcagct accatctcaa ggatgatttg gcgacgctct acgggtatca acttttgctc
      781 cttcctttgt cctgctgaca ttctacgcta tttgcctgcg aaacgtgcgc ggcgcaacta
      841 acgcttagtt cacataaaat aacacgcaat gttaatttat gtgaatcagc tcaccatatc
      901 gttatctccc agcgcttata ttcacaatat caaacaaaat atcacttaaa ttaacaggga
      961 gagcagatga aaacgggatc tgagtttcat gtcggtatcg ttggcttagg gtcaatggga
     1021 atgggagcag cactgtcatg tgtccgcgca ggtctttcta cctggggcgc agacctgaac
     1081 agcaatgcct gcgctacgtt gaaagaggca ggtgcttgcg gggtttctga taacgccgcg
     1141 acgtttgccg aaaaactgga cgctctgctg gtgctggtgg tcaatgcggc ccaggttaaa
     1201 caggtgctgt ttggtgaaac aggcgttgca caacatctga aacccggtac ggcagtaatg
     1261 gtttcttcca ctatcgctag tgctgatgcg caagaaattg ctaccgctct ggctggattc
     1321 gatctggaaa tgctggatgc gccagtttct ggtggtgcag taaaagccgc taacggtgaa
     1381 atgactgtca tggcctccgg tagcgatatt gcctttgaac gactggcacc cgtgctggaa
     1441 gccgttgccg gaaaagttta tcgcataggt gcagaaccgg gactaggttc gaccgtaaaa
     1501 attattcacc agttgttagc gggcgtacat attgctgccg gagccgaagc gatggcactt
     1561 gcagcccgtg cggggatccc gctggatgtg atgtatgacg tcgtgaccaa tgccgccgga
     1621 aattcctgga tgttcgaaaa ccggatgcgt catgtggtgg atggcgatta caccccgcat
     1681 tcagccgtcg atatttttgt taaggatctt ggtctggttg ccgatacagc caaagccctg
     1741 cacttcccgc tgccattggc ctcaacagca ttgaatatgt tcaccagcgc cagtaacgca
     1801 ggttacggga aagaagacga tagcgcagtt atcaagattt tctctggcat cactctaccg
     1861 ggagcgaaat catgatcaag attggcgtta tcgccgatga ttttaccggc gcgacggata
     1921 tcgccagttt tctggtggaa aacggtctac caacggtaca aattaacggt gttccaacag
     1981 gtaaaatgcc ggaagcaatc gacgcactgg tgatcagcct gaaaacgcgc tcctgtccgg
     2041 tggttgaagc cacacagcaa tcgctggcgg ctctgagctg gttgcaacag caaggttgca
     2101 aacagatcta tttcaaatac tgctctactt tctacagtac ggcgaaaggt aatatcggcc
     2161 cggttaccga tgcattaatg gatgctctcg acacgccgtt tacggtcttc tctccggccc
     2221 tgtcggtcaa cggacgtacg gtttatcagg ggtatttgtt cgtaatgaat caactgctgg
     2281 ccgaatccgg gatgcgccat cacccggtaa atcccatgac cgacagctat cttccccgtc
     2341 tggttgaagc gcaatccaca gggcgctgcg gcgtcgtttc ggcacatgtt ttcgaacaag
     2401 gtgtggatgc cgttcgtcaa gagctggctc gcttacagca agagggctac cgctacgcgg
     2461 tgcttgatgc gctgaccgaa caccatctgg aaattcaggg agaagccttg cgcgatgccc
     2521 cactggtaac gggcggttct ggtctggcga ttggcctggc ccggcagtgg gcgcaagaaa
     2581 acggtaacca ggctcgcgaa gcagggcatc cgctcgctgg gcgcggcgta gtgctctccg
     2641 gttcatgctc tcaaatgacc aaccgccagg tggcacatta ccgtcaaatt gcaccagccc
     2701 gtgaagttga tgtggcacgc tgcctctcaa ccgaaactct ggccgcttat gcacacgaac
     2761 tggcagagtg ggttctgggc caggaaagtg tacttgctcc actggttttt gccaccgcca
     2821 gcactgacgc attggcagca attcaacagc aatacggtgc acaaaaagcc agtcaggcag
     2881 tagaaactct gttttctcaa ctagcggcgc ggttagcagc ggaaggcgtg acacgcttta
     2941 ttgtcgcagg cggtgagacc tccggcgtag tcacacagag cctgggcata aaagggtttc
     3001 atattggccc aaccatttcc cccggcgtgc cgtgggtaaa cgcactggat aagcctgtct
     3061 cactcgccct taaatctggc aacttcggtg atgaagcctt ttttcacgag cccaaagaga
     3121 gtttttatca tgagcgattt cgcaaaagta gagcagtctt tgcgagagga gatgacgcgg
     3181 attgccagtt cattctttca gcgcggctat gcaaccggtt cggctggcaa tctgtcgctg
     3241 cttttacctg acgggaattt actggcgaca ccgacaggtt catgcctggg caatctcgat
     3301 ccgcagcggc tttccaaagt cgccgcggat ggcgaatggt taagtggtga caaaccctcg
     3361 aaagaggtgc tctttcatct ggcgctgtat cgcaacaatc cgcgctgtaa agcggtggtg
     3421 catttgcaca gcacatggtc gacggcgctt tcctgcctgc aagggctgga cagcagcaac
     3481 gttattcgtc cgttcacacc atacgtggtg atgcggatgg gaaatgtccc gctggtgccc
     3541 tattaccgac cgggcgataa acgcatcgca caggatctgg cggaactggc agcagacaat
     3601 caggcttttt tactggcaaa tcatggccca gtggtttgcg gtgaaagcct gcaagaagcc
     3661 gccaacaata tggaagagct ggaggaaacg gcaaaactga tttttattct cggtgaccgc
     3721 ccgatccgtt atctgaccgc aggtgaaatt gcggaattaa ggagttaatg caatgcctcg
     3781 ttttgcagct aatttatcca tgatgttcac cgaagtgcct tttattgaac gcttcgccgc
     3841 agcgcgaaaa gccgggttcg atgctgtgga atttctgttt ccctatgact actccaccct
     3901 gcaaatccaa aagcaactgg agcaaaacca tctgacactg gcgctgttca ataccgctcc
     3961 cggagatatt aatgcggggg aatggggatt atccgccctt cccggacgtg agcacgaagc
     4021 acacgcagac atcgacctgg cactggaata tgcattggcg ctcaattgtg aacaagtcca
     4081 tgtgatggca ggcgtcgtgc ccgctggcga agatgctgaa cggtaccggg cagtatttat
     4141 cgataatctc cgctacgctg ccgaccgctt tgcaccacac ggcaagcgaa tattagttga
     4201 agcactcagc cccgacgtta agcctcatta tctcttctcc agccagtatc aggcactggc
     4261 tattgttgaa gaggttgcgc gagataacgt gtttattcaa ctagatactt ttcatgcgca
     4321 aaaagtagat ggcaacctga cgcatttaat ccgcgactac gctgggaaat atgcgcacgt
     4381 acaaattgcc ggactacctg atcgacatga accggacgat ggagaaatca actatccgtg
     4441 gctgttccgc ctgttcgatg aggtgggata tcagggctgg atcggttgtg aatataaaac
     4501 tcgtggcctc accgaagaag ggcttggctg gtttgacgcc tggcgctaat tcgttaaatc
     4561 cctaattaca acgtacccat acatcccccc atctacggat ggggtaggtt aactataact
     4621 ttcagacagg gtttcccatg tccacaatta cattgttata cattgcgtta gctggcgtaa
     4681 tcatgctgtt gctgctggtc atcaaggcaa aggtacaacc attcgttgct ctgctcctcg
     4741 tcagcctgtt agtcgcactt gcggcgggta taccggcggg cgaagtgggt aaagtgatga
     4801 tcgccgggat gggcggtgtg cttggttccg tcactattat tattggtctg ggcgctatgc
     4861 tggggcgtat gatcgaacac tctggtggtg cagagtcact ggctaattat ttcagtcgca
     4921 agttaggtga caaacgaact atcgctgcgc tgactctggc agcgttcttc ctcggtattc
     4981 ccgtcttctt tgatgtcagc tttattattc ttgcgccaat catttacggt tttgccaagg
     5041 ttgccaaaat atcgccactc aaatttggcc tgcctgtcgc tggaatcatg ctaactgttc
     5101 atgtggcagt accgccgcat ccaggccctg tcgccacagc ggggttactc cacgcagaca
     5161 tcggctggct aaccatcatc ggtattgcga tttctattcc cgtagggatt gttggctact
     5221 ttgcagcgaa aataatcaat aagcgccaat atgcgatgtc agtagaagta ctggaacaga
     5281 tgcaactggc tccggccagt gaggaaggcg cgacaaaatt aagcgataaa ataaatccac
     5341 cgggcgtcgc gctggtcacc tcgctaattg ttattcctat cgcgattatc atgacgggta
     5401 cggtttccgc aacactgatg ccgccttcgc atcccctgct tggtacgcta cagctgatcg
     5461 gctcaccaat ggtagctcta atgattgcgc tggtgctggc attctggtta ttggctttac
     5521 gtcgcggctg gagcttacaa cacaccagcg acattatggg ctcagccctt cccactgcgg
     5581 cggtagtgat tttggttact ggtgctggag gggtatttgg caaagtgctg gtggaatcgg
     5641 gcgtcggcaa agcccttgcc aatatgctac aaatgattga cctgcctctg ttaccagccg
     5701 catttattat ttcactggct ctgcgtgcat cgcaggggtc agcaaccgta gcaatcctga
     5761 caaccggcgg gttactctca gaagcggtga tgggattgaa tccgattcag tgcgtattgg
     5821 tgacgctggc agcctgcttt ggtgggcttg gcgcgtcaca tattaatgac tcagggttct
     5881 ggattgtgac caaatatctg gggttgtcgg tagcagacgg tctgaaaacc tggacagtgt
     5941 taacgaccat tctcggtttt accggattct taattacctg gtgcgtatgg gcggtaattt
     6001 gaccttaata aaaaggtccg atgggcatcg gaccttttat tgtgcacaga aaaggccagc
     6061 ctcgcttgag actggccttt ctgacagatg cttacttact cgcggaacag cgcttcgata
     6121 ttcagcccct gcgtttgcag gatttcacgc aaacggcgca ggccttcaac ctgaatctgg
     6181 cgaacacgtt cacgggtgag gccaatttca cgacctacat cttccagtgt tgccgcttcg
     6241 taccccagca aaccgaatcg acgtgccagc acttcacgct gtttggcgtt cagctcgaac
     6301 agccatttga cgatgctctg cttcatatcg tcatcttgcg tggtatcttc cggaccgttc
     6361 tctttttcat cggccaggat gtccagcaac gctttttcgg aatcaccacc cagcggggtg
     6421 tctaccgagg taatgcgctc gttaagacga agcatacggc tgacgtcatc aactggctta
     6481 tccagttgct ctgcgatctc ttccgcactt ggttcatggt ccagcttatg ggacaactca
     6541 cgtgcggttc gcaggtaaac gttcagctcc tttacgatgt gaatcggcaa acgaatagta
     6601 cgggtttggt tcataatcgc ccgttcaatc gtctggcgaa tccaccaggt tgcgtatgtt
     6661 gagaagcgga aaccacgttc cgggtcaaac ttctctaccg cgcggatcag ccccaggttg
     6721 ccctcttcga taaggtccag caacgccaga ccacgattgc cataacggcg ggcaattttt
     6781 accaccagac gcaagttact ctcgatcatc cggcggcgag aggcgacatc tccacgcagt
     6841 gcgcgacgcg caaaataaac ttcttcttcg gccgttaaca gtggtgaata accaatctca
     6901 ccaaggtaaa gctgagtcgc gtccaacaca cgctgtgtgg ctccctgcga taacagttcc
     6961 tcttcggcca aatcgttatc actgggttcc tcttctacta aggccttttc gtcaaaaacc
     7021 tcaactccgt tctcatcaaa ttccgcatct tcatttaaat catgaacttt cagcgtattc
     7081 tgactcataa ggtggctcct acccgtgatc ccttgacgga acattcaagc aaaagcctgg
     7141 ttccgccgat ttatcgctgc ggcaaataac gcagcgggtt tacggatttc cccttgtaac
     7201 gaatttcaaa atgcaagcgt gttgaactgg ttccggtgct acccatggtt gctatttttt
     7261 gccccgcctt cacttcttgt tgttcccgga ccagcattgt gtcgttatgg gcgtaggcac
     7321 tcaggtaatc atcattatgt ttgatgataa tcagattacc gtagccgcgc agcgcgttac
     7381 cggcataaac aacgcggcca tctgcggtcg cgataattgc ctgtcctttg ctgcctgcga
     7441 tatcaatccc cttgttgccc ccctcagaag cgccaaaggt ttcgatcact ttgccctcag
     7501 tcggccagcg ccaggtggag ataggcgtac tggttgatgt actgctgaca gttggctcgg
     7561 ttgtgcttgc tgttggtacc gttacaggcg ctgtgaccgt ggtcgcagct ggcttgttgt
     7621 tcggcaacat tttgttagca ctctgttcac ccgaagattc agaatacgta attgtcggtt
     7681 gcgacgcaac agcaacggtg gaattttgtg caggcttgat cacaactcct tgctctgctg
     7741 cgtcggcctg ggtaatggca tttccgccag tgattggcgt accggaagca ttacccacct
     7801 gcaaggtctg accaacgttc agcgcgtatg gtgcctgaat attgttgcgc tgagcaaggt
     7861 cacggaaatc gttgccagta atccaggcga tatagaaaag tgtgtcgcct tttttcacgg
     7921 tataggtact gccgctataa ctgcctttcg gaatgttccc atactgacgg ttatagacga
     7981 tgcgtccgtt ttccatctgt accggctgct gagctactgg ctgcactggc tggatttgcg
     8041 gttgctgggc tgtagacgtc gtccccattt tcggcggcgg cgtaatcaac ataccagaat
     8101 tggtatttgc aggcgcattg ccattaacgg agctgaccgg tgccggtgga tttgaagtgt
     8161 cagaacagcc tgccagccat agcgaaacca gtgacaaagc cgcaatgcgg cgaacggtga
     8221 attttgggct tcccgcgctc atttatcccc caggaaaaat tggttaataa ccagtgacat
     8281 aattaccgtg caaggcaccc tactgaacac tggaaaagat gttcacgata cgctgacctg
     8341 cggcaaaata accaggaaaa atccaggtat ttcctcacgt tttaagccag ctcccccttc
     8401 actaaaggga caaagcgcac ggcctccacg gtatcgataa taaattcgcc tccccgacga
     8461 cgcacccgtt tcaaatactg gtgctcctcc cctacgggta agacgagaat cccgccttcg
     8521 tccagctgcg tcattagcgc agttggaatt tccggcggtg ccgccgtaac aatgatagcg
     8581 tcaaacggcg cgcgtgcctg ccaaccttgc catccatcgc catgacgggt tgaaacatta
     8641 tgtaaatcaa gatttttcag gcggcgacgc gcctgccact gcaaaccttt aatccgttcg
     8701 accgagcaaa catgctggac aagatgcgcc aggattgccg tttgatatcc cgaaccggtg
     8761 ccaatttcca gcacccgcga ctgcggcgtc agctcgagta attcggtcat tcgcgccacc
     8821 atatacggct gcgaaattgt ctgcccctga cctatcggca aggcgatatt gtcccaggct
     8881 ttttgttcaa acgcttcatc aacgaatttt tcacgcggca cggcagcaag tgcattcagc
     8941 acctgctcat cctgaatacc ttgcgcacgt aattgatcca gaagtgcttg tacgcgtctg
     9001 cttaccattg cgtgccaact cccacgctgt ttaaccagtc tgaaaccaca tcttgcgcgc
     9061 tatgcgcagt taaatccaca tgcagcggcg tgatggagac atagccctca tctaccgcag
     9121 caaaatcggt ccccggaccg gcatcacatt taccgcccgg cgggccaatc cagtacagcg
     9181 tattgccgcg cggatcttgc tgcgggatca cctgatctgc cggatgtcgt gtaccgcagc
     9241 gcgtcacgcg aatacctttg atttgatcca agggtaaatc cggaacgtta atattaagaa
     9301 tacgtccggt gcgcagcggc tctttacaca gtgcgcgcaa aattgaacag gttaccgccg
     9361 cggcagtgtc gtaatgttta tgcccgtcaa gcgagacggc cagcgccgga aaacctaaat
     9421 gacggccttc catcgcggcg gctaccgtac cggaataaat aacgtcatcc cccagattcg
     9481 gcccggcgtt aatgccggac acaacaatgt ccgggcgcgg acgcatcaga gcattcacgc
     9541 caagatagac gcaatcggtc ggggttccca tttgcacagc aatatcacca ttttcaaagg
     9601 taaacgtgcg cagggaggat tccagtgtca gagaatttga agcgccgctg cggttacgat
     9661 cgggggcgac cacctgaacg tcagcaaact cacgcaaggc tttcgccagc gtttgtatac
     9721 cgggtgcatg taccccgtca tcattactca gcaatatgcg cataatcacc tgttgtgttg
     9781 ataagttccc tgacaacgct ggttgcaaaa ctacccgccg gaagccagaa acggatctct
     9841 acggtgacgt catcccacca attccagctt aattgttgcg gatacagcag catcgctctg
     9901 cgcgcggctt caactttttc gcgcaccagt aaagcttgta attcagtttc tgcggcgaca
     9961 gctgcttgtt cgaatgccag cgcttcacgc tgagttcccc attcgccact gcccggcaat
    10021 gcggcggtta tcatcagctc tttatcgttg acgcgatgct gtaattccgc cagttcttcg
    10081 gtggttgcta caaaccagct accacgtccg gctaattgta gcgcatcgcc gtcaacaact
    10141 tgattaacgt ctgctttttt gaggcgctca gcaacaatct gattaaacaa cgcactgcgg
    10201 gctgccgaca accaaaaact ccgtttattg cgatcgcgca ccggagtatt ggtttgcgcc
    10261 cagcgcagcg cgccctgcaa gttgctaccg ccaatcccaa aacgttgggc accgaagtag
    10321 ttcggtacac cttttacgca aatatcgatc agacgttgtt caacgtcatc gcgattgctc
    10381 acttcgcgca gaaccagggt aaaggcgtta cctttcagcg cgcctaaacg cagcttgcgc
    10441 ttgtgccgcg catactccag cacctggcag ccttccagtt gaaaggcgct cagatcgggc
    10501 atttccttgc ctggcacgcg agcgcataac cactgttccg taacagcatg tttgtctttt
    10561 tgcccagcga agctgacttc atgggcatga attttcagga atttcgccag tgcatccgcc
    10621 acaaaacggg tattgcagcc gtttttgagg attctaacca gaatatgctc accttcacca
    10681 tcaggctcaa agcccaaatc ttccaccacc acaaagtctt ccggattggc tttcagcagc
    10741 ccggtgcctt gcggtttacc gtggaggtaa gtgagattat caaactcaat cattttgttg
    10801 ccttaatgag tagcgccacc gcttcacagg caatcccttc cccacgtccg gtaaatccaa
    10861 gtttttccgt agtagtggct ttcacgttaa catcatccat atggcagccg agatcttcgg
    10921 caataaacac gcgcatttgt ggaatgtgcg gcaacatctt cggtgcctga gcgatgatag
    10981 tgacatcgac gttgcccagg gtataaccct tcgcctgaat acgacgccag gcttcgcgta
    11041 gcagctcgcg gctgtcggca cctttaaata ccggatcggt atccgggaac agcttgccga
    11101 tatcccccag cgccgccgcg ccaagcaatg catcggtcaa cgcatggagc gccacgtcgc
    11161 catcagaatg cgccagcaat cctttttcgt aaggaatgcg tacgccacca atgataattg
    11221 ggccttcacc gccaaaggca tgtacgtcaa aaccgtgtcc aattcgcatt atgtattctc
    11281 ctgatggatg gttcgggtga ggtaaaactc ggccagtgcc aaatcttccg ggcgcgtgac
    11341 tttaatgtta tccgcacggc cttcgaccaa ctgaggatgg aatccgcaat attccagcgc
    11401 cgaggcttcg tcggtaatag tcgcgccttc atttagagcg cgcgtcagac agtcatgtaa
    11461 cagctcacga gggaaaaatt gcggcgtcag cgcgtgccat aagccgttgc gatcaacggt
    11521 atgagcaatg gcatttttgc ccggttcggc acgtttcatc gtatcgcgca ctggtgcggc
    11581 taggatccct cccgtgcggc tggtttcgct caacgccaac aatcgcgcga ggtcatcctg
    11641 atgcagacaa ggacgagcgg cgtcatgcac caatacccac tgcgcgtcgc cagcggcttt
    11701 caaacctgcc agcacggaat cggcacgctc atcaccgcca tctacaacgg tgatttgcgg
    11761 atgattcgcc agaggaagtt gtgcaaaacg gctatcgcca ggacttatgg caatgacgac
    11821 acgtttcacc cggggatgcg ccagcagcgc atgcaccgag tgttcaagaa tggtttgatt
    11881 accgattgag agatattgct taggacattc cgtttgcatt cgacggccaa atccggccgc
    11941 cggaaccacg gcgcaaacat ccaaatgagt ggttgccatg ttaattcccg ggctgattta
    12001 tcgattgttt tgccccgcag actgtgcgcg cttcgacgcg tcaggcacca gacgataaaa
    12061 agtttcgccc ggcttggtca tgctgagttc attacgcgca cgctcttcga gcgcctcctg
    12121 gccgccattg agatcgtcaa tttcggcaaa aagttgatcg tttcgcgctt taagtttcgc
    12181 gtttgtagct tgctgtgccg ccacatcatc attgacgcgg gtatagtcat gtataccgtt
    12241 cttaccgaac cacagcgaat actgtagcca gaccagaata gccagcaaca gcagcgttag
    12301 tttacccatc ctgccccctg aaaaacggca tcatcatccc atgcatccga agacgactct
    12361 acatcctctg ttggggatac cgcgacaacg cgggcaaatg taccacattt gtccattgtt
    12421 acgtataccc agggcgtgca gaacataatc tcattattag ttacggtttg aattatgaac
    12481 agaggagaca agaaagtaca aattagccca gtagccacat aaacagtgcg ccaaacataa
    12541 tgcctactgt caccagggtg aaaacaatac tgtagcgtag ctttccgtcc atcaatgaat
    12601 gcagcgcaat ccccaccact accgcgacag gcatcagtgc cagaaagaaa ggccaggtgt
    12661 agataaagaa gaacagcgtg ttagagccat aaatcaacat cggcatcgcc agcgcaaata
    12721 accaggagat aaaaccgacc acggcaccag gcagtgacca tgtggtttct tcatcctcag
    12781 taaggctgtc gttatttgtt agtgtaatgt tatggctatt acgcatattt gatcctgtta
    12841 ctttgacgaa ccgggcatgg aaacccggtg gtgtctcagg atctgataat atcgttctgt
    12901 ctcaacagat ctaataattg ctgtaccaaa tttgttacta attgttcacc attgagatga
    12961 atttctgccg attcaggcgc ttcgtaaacg gaatctattc ccgtaaagtt gcgcagttca
    13021 ccggcacgcg ctttcttata taagcctttg ggatcgcggg cttcgcaaat cgccagcggc
    13081 gtatcgacaa acacttcgat aaagcgccct tctcctacgc gttcgcgaac catctggcgt
    13141 tcggcgcggt gtggcgagat aaatgcggtc agcaccacca gtccggcttc aaccatcaaa
    13201 ttcgccactt caccgacgcg acggatattc tctttacgat cggcatcgct aaaaccgaga
    13261 tcgctgcata atccgtggcg aacattgtcg ccatccagca gatacgtact gacgccgagt
    13321 ttatgtaacg cctcctccag cgccccggcg accgttgatt taccggaccc agagaggccg
    13381 gtaaaccaca gcactacacc acgatgacag tggtgtagct cgcgttgttg cacagtgacc
    13441 ggatggctat gccagacgac gttttcgtca tgcagcgcca ttatttatcc cccagcaaat
    13501 cgcgcgcgcc ccagtgcgga aagtggcgac gaaccagggc attcaattcc agttcgaatg
    13561 cactgaattc agatgacgca acggcggcct cgtttttcgg ctcatgcacc ataccggcac
    13621 caacagtcac gttgctcagg cgatcgataa aaatcagccc acccgtcacc ggattttgtt
    13681 gataacgatc taacaccagc ggctcgtcaa aagtgagatc cacgaggccg atcccattca
    13741 gtggcaggtt ttcaacttca cgctgggtaa ggttattaat atcaacctga tagcgaatgc
    13801 catcaacacg cgcgcgcgtc ttcttaccgg caattttgat gtcgtaactc tggcccgggg
    13861 aaagcggctg ttccgccatc cataccacat ccaccgacgc gctctgcacc gccggtaacg
    13921 cttcgtctgc cgccagcagc agatcgccac ggctgatgtc gatctcatcc gtcagcacca
    13981 gggtgatcgc ttctccggca aaggcttctt cgcgatcacc atcaaaagtc acgatccgcg
    14041 cgacgtttga ttccacacca gagggcagca ctttgacacg ttgcccgact tccacgcgac
    14101 cggatgccag cgttccggcg tagccacgaa aatcgagatt cgggcgatta acgtactgca
    14161 ccgggaagcg cattggctgg gcatccacca ctcgctggat ctccacggtt tccagcactt
    14221 cgagcagtgt cggaccgctg taccacgaca tactttcact ttgcgatgcc acgttgtcgc
    14281 cttccagtgc agagagcggc acaaagcgga tatccagatt acccggcagc tgcccggcaa
    14341 aggtcaaata atcttcacga atacgggtga acgtctcttc actgtaatcc accagatcca
    14401 ttttgttgat cgccacgacc agatgtttga tccccaacag tgtggagata aaactgtgac
    14461 gacgggtttg atcgagcacg cctttacggg catcgatcag taagatcgcc agttcacatg
    14521 tcgatgcgcc agtcgccata ttgcgagtgt actgctcgtg ccctggggtg tcggcgataa
    14581 taaatttacg cttctcggta gagaaataac ggtaagccac gtcaatggtg atgccctgtt
    14641 cgcgctcagc ttgcaggccg tccaccagca gtgccagatc cagcttttcg ccctgggtgc
    14701 cgtgacgctt actgtcgtta tgcagcgatg agagctgatc ttcgtagatt tggcgggtat
    14761 cgtgcagcag gcgaccaatc agggtacttt tgccgtcatc gacgctacca caggtcagaa
    14821 aacgcagcag gcttttatgt tgttgcgcaa tcatccaggc ttcgacgccg ccttcattgg
    14881 cgatttgttg tgcaagtgcg gtgttcatct taaaaatacc cctgacgttt tttcagctcc
    14941 atagaccccg cctggtcgcg gtcaatcacg cggtcctgac gttcactggt ggtagaaacc
    15001 agcatctctt cgatgatctc cggcagtgtt tgtgaatttg actccaccgc accggtcagc
    15061 ggccagcagc ccagcgtacg gaaacgcacc atccgttttt taatcacttc gcccggttgc
    15121 aggtcgatac ggttgtcatc aatcatcatc aacataccgt cgcgttccag aaccggacgt
    15181 tccgcagcga gatacagtgg cacaatgtcg atattttcca gccagatgta ttgccagata
    15241 tcctgctcgg tccagttaga gagcgggaag acgcggatgc tttcaccttt gttaatttgc
    15301 ccgttgtagt tgtgccacag ctccgggcgc tgatttttcg gatcccagcg atggaagcgg
    15361 tcacggaaag agtagattcg ctctttagcg cgggatttct cttcatcacg gcgcgcacca
    15421 ccgaaggcgg catcaaaacc gtatttgttc agcgcctgct tcaggccttc agttttcata
    15481 atatcggtat gtttcgcgct gccgtgtacg aatggattaa tccccatcgc cacgccttcc
    15541 gggtttttat gcaccagcag ctcgcagccg taggctttag cagtacgatc gcggaactca
    15601 tacatctcgc ggaatttcca gccggtatcg acatgcagca acgggaaagg cagcgtacct
    15661 ggataaaacg ccttgcgcgc cagatgcagc atgacgctgg aatctttacc gatagagtag
    15721 agcatcaccg gatttgagaa ttctgccgcc acctcgcgaa taatgtggat gctttccgcc
    15781 tccagttgcc gcaggtgagt aagtcgtttt tgagccataa ccgttccttt gcaataccgc
    15841 tattttcttg ccatcagatg tttcgactat agggagcgta agagaacgaa tgaaattacc
    15901 aattagaatg agtagttcct taacggaata acgatttggc aaagctaata tcaaaaagtg
    15961 cttaaggcac cggatttcgg gcgtttagga agatttgaaa ttgttttagc gcagcggcag
    16021 tttcatacta tggcggtaaa aaaatttgca tggtatttaa ggactcacta tgttttccgc
    16081 attgcgccac cgtaccgctg ccctggcgct cggcgtatgc tttattctcc ccgtacacgc
    16141 ctcgtcacct aaacctggcg attttgctaa tactcaggca cgacatattg ctactttctt
    16201 tccgggacgc atgaccggaa ctcctgcaga aatgttatct gccgattata ttcgccaaca
    16261 gtttcagcaa atgggttatc gcagtgatat tcggacattt aatagtcggt atatttatac
    16321 cgcccgcgat aatcgtaaga gctggcataa cgtgacggga agtacggtga ttgccgctca
    16381 tgaaggcaaa gcgccgcagc agatcatcat tatggcgcat ctggatactt acgccccgct
    16441 gagcgatgct gacgccgatg ccaatctcgg cgggctgacg ttacaaggaa tggatgataa
    16501 cgccgcaggt ttaggtgtca tgctggaatt ggcagaacgc ctgaaaaata cgcctaccga
    16561 gtatggtatt cgatttgtgg cgaccagcgg cgaagaggaa gggaaattag gcgctgagaa
    16621 tttactcaag cggatgagtg acaccgaaaa gaaaaatacg ctgctggtga ttaatctcga
    16681 taacttaatt gttggcgata aattgtattt caacagcggt gtaaaaaccc ctgaagcagt
    16741 aaggaaatta acgcgcgaca gggcgctggc aattgcgcgc agtcacggaa tagccgcaac
    16801 gaccaatccg gggttgaata aaaattatcc gaaaggcact gggtgttgta atgacgcaga
    16861 aatattcgac aaagcgggca ttgctgtact ttcggtggaa gcgactaact ggaatcttgg
    16921 gaataaggat ggttatcagc aacgcgcaaa aacagccgca ttccctgcgg gaaatagctg
    16981 gcatgacgta agactggata atcaacagca tattgataag gcacttcctg gaagaataga
    17041 acgtcgctgc cgtgacgtta tgcggataat gctaccgttg gtgaaggagc tggcgaaggc
    17101 gtcttgatgg gtttgaaaat gggagctggg agttctaccg caggggcggg gaattctaag
    17161 tgatatccat tatcgcatcc agtgcgcccg gtttatcccc gctggcgcgg ggaacacact
    17221 aagcatacat aactgttttt aaacaaattt attccgcatc aacaatctac caactaaatt
    17281 aaaacatttc cttattttta aagaacggat aacttattga ttatcaacag gaagaaaaga
    17341 aaccaaacgt aacccatcca aatccaccgg aatacgtctg ttttctcccc aggtctgaaa
    17401 ttcaaaaccc gactcggtat tggtcgccca ggccatcacc acatttccgc aaccagccag
    17461 ttgggtaatt tgctgccaga tcatctcccg aatacgtttt gatgtatcac caacatacac
    17521 accggcacgc acttccagta gccagattgc gagccgtcca cgtaagcgcg gcgggacatt
    17581 ttctgtaaca accacgacca tgctcatcag ccgcgtcctc gatgaccgct atcgcccaac
    17641 gtttcaggtt cggggatggc tggcggtaac atatccggcg caggttgtgg cggttcaatt
    17701 tcacctgcgg caaggacttc ctcaattaac ggtattaatt tgcccgttaa cttagtgcta
    17761 cggaaaatat cacgacaggc taatctgact tctttatcag gttctgcggg ttgcctcgcc
    17821 gctatttcaa atgcctttgg tacaaccgaa tcaaatttaa tgatatcggc tatgtcataa
    17881 acaaatgaaa gcggtttgcc actatggata aacccaatag cgggcgcata tcccgcggct
    17941 aatactgccg cttcagatat accgtacaga catgatgtag cagcactgat gcagcgattc
    18001 acaacatcgc cttttcccag tctttaggat cgtatttgcg accattccat ttcacaccat
    18061 attgtttcgc cagtaatgca tacgtctggc gaacgcgaga tccctcaatt ccacgtagct
    18121 gctccactga acggcgagct ggcggtggct cacgaaaacg taattcatac attttgcgca
    18181 ccaccttcag acgtagatct tccgttaaag ccagctttgc ctggtagagt aacttatcag
    18241 cacgcgcccc accgggttgt ccggaagagt agacgcgaac acccgcttca ccgacccaga
    18301 ccagtagcgt ccccaccgtg gcggccagat gcaccgccgc gtgggaaact ctcgttcccg
    18361 gttcgagcat aatgcaggcg accgatccca ccggaatgtg cgtgcggatc ccggttttat
    18421 cgatcagcac gaaagcgccg tccagtacgt cgatttgccc gtactggagg aagatcatag
    18481 aggtgcgatc ttttaacggg atcgggctca gcggtacaaa cgtcacgcct ctgctccggg
    18541 tttgatcagc atcagaccac agccgaacgc gcggcttttg ccatacccct gactgagacg
    18601 ttgcagaaat aacccgggat cggtgaccgt aagcatcccc gtataatcca cgctactgaa
    18661 ctggatcagt tgccgggagt tttcccgccg cagttgctgt tgtcggtagg catcaaccga
    18721 ggtatccagc agtgtaaaac cacttctctc cccctgggct gccagccagt ccagcgccgc
    18781 ctgttgttga tgcaaccaga catcacttcc ttccgcctgc cccctcacct gccgtttcgc
    18841 ctccatcagc agatcgtggc gcttgcccgc tttacagatt gttggattcg cccgcaggtt
    18901 gaaacaaagt tgttgtccgg tacacagctc gggcgcaaat gaccggcatt ctatggtgaa
    18961 cgtatcactt tccgccgggc gttcctgcga cagtacaaaa aagcgaaacg cgccctggag
    19021 ttcttcccga cgataaagaa attgcctttc tttgccgcta gggaagagat cccacagcca
    19081 ctgatgcatc acatattcac cgcgatccac cagatgcagc aactgcgcag gcgaaagctg
    19141 gccggtatgt aaggttattc ttgagaggta catggttcct ccttgctgag ccacggcccc
    19201 tgattgacgg tgcgttcccc aaacagccac tgctgacgat ttaaaggaac atcccggcgg
    19261 cgtaatattt tgctcgcgac caggccgtcg tgtttccctt cccaccagca ttcatcctga
    19321 agtttcggga gtgaaacttt cagtttatgg aaatgatcct gatactgttg gtatgcatta
    19381 cataaggcat cacacgcgtt gccttcgagc agtaacggtg caagaggtaa tgccagcgga
    19441 tgactttttc gccccagata aagcggaaaa actggatggc gtaaaccgtc ctgcaactgt
    19501 tcgaggctgt aaggcgcatc ggctgttgtt gccaccgcca ccatccacca ggcatcggtg
    19561 tagtagtcgc gccgggagat aatcgcgctc aaaagctcag ggtcgctcaa ctcttcgcga
    19621 cggctgaaat aacgtgcttt acgcacctct tttggcatct ggaccgtgtg ataatcccgt
    19681 gcccagcgcg ggttacggct ggcgcaaacc accagtgaat agtggcgatt aaacgcgttt
    19741 aagcgttcgg tatcatcacg ccggatccct accccggcag ccagcagccc cagcaatgct
    19801 gagcgcgaag
//
LOCUS       DAJVUN010000069        18799 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.069, whole genome shotgun sequence.
ACCESSION   DAJVUN010000069 DAJVUN010000000
VERSION     DAJVUN010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18799
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.069"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(32..2479)
                     /gene="glgP"
                     /locus_tag="OQQ76_002058"
     CDS             complement(32..2479)
                     /gene="glgP"
                     /locus_tag="OQQ76_002058"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen phosphorylase"
                     /protein_id="HCS1968558.1"
                     /translation="MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNA
                     TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGAL
                     EAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI
                     VNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQ
                     IIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY
                     SGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRL
                     LIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF
                     LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF
                     ADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCD
                     FPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI
                     TRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
                     VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML
                     DHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRY
                     RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDR
                     TIKEYADHIWHIDPVRL"
     gene            complement(2498..3931)
                     /gene="glgA"
                     /locus_tag="OQQ76_002059"
     CDS             complement(2498..3931)
                     /gene="glgA"
                     /locus_tag="OQQ76_002059"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HCS1968559.1"
                     /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF
                     PDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA
                     YTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV
                     HNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE
                     ITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN
                     KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVL
                     QEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL
                     PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRF
                     VQRQAMAMDFSWQVAAKSYRELYYRLK"
     gene            complement(3931..5226)
                     /gene="glgC"
                     /locus_tag="OQQ76_002060"
     CDS             complement(3931..5226)
                     /gene="glgC"
                     /locus_tag="OQQ76_002060"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HCS1968560.1"
                     /translation="MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA
                     VHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLL
                     PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG
                     ARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVF
                     DADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRD
                     VGTLKAYWKANLDLASVVPELDMYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLV
                     SGGCVISGSVVVQSVLFSRVRVNSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACVIPE
                     GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLGHKQER"
     gene            complement(5244..7217)
                     /gene="glgX"
                     /locus_tag="OQQ76_002061"
     CDS             complement(5244..7217)
                     /gene="glgX"
                     /locus_tag="OQQ76_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HCS1968561.1"
                     /translation="MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQE
                     HRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDG
                     EFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKG
                     LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNY
                     WGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL
                     FSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR
                     FDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEW
                     NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC
                     VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQG
                     TPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVE
                     NRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPA
                     GEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR"
     gene            complement(7214..9400)
                     /gene="glgB"
                     /locus_tag="OQQ76_002062"
     CDS             complement(7214..9400)
                     /gene="glgB"
                     /locus_tag="OQQ76_002062"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HCS1968562.1"
                     /translation="MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDAT
                     DVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFG
                     PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD
                     GRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETAS
                     LICGLPEKVVQTEERKKANQFDASISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA
                     KWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVIL
                     DWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALY
                     WIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQV
                     SGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT
                     FGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL
                     FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY
                     GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTD
                     SMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE"
     gene            complement(9673..10776)
                     /gene="asd"
                     /locus_tag="OQQ76_002063"
     CDS             complement(9673..10776)
                     /gene="asd"
                     /locus_tag="OQQ76_002063"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCS1968563.1"
                     /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFNAIRPVFFSTSQLGQAA
                     PSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLR
                     MKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVAT
                     YQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNF
                     GVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQ
                     AFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK
                     LNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA"
     gene            10968..11561
                     /gene="yhgN"
                     /locus_tag="OQQ76_002064"
     CDS             10968..11561
                     /gene="yhgN"
                     /locus_tag="OQQ76_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YhgN"
                     /protein_id="HCS1968564.1"
                     /translation="MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVREL
                     LIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAG
                     EEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFL
                     RLLGEKGVNALERLMGLILVMMATQMFLDGIRMWMKG"
     gene            complement(11618..12958)
                     /gene="gntU"
                     /locus_tag="OQQ76_002065"
     CDS             complement(11618..12958)
                     /gene="gntU"
                     /locus_tag="OQQ76_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1968565.1"
                     /translation="MTTLTLVLTAVGSVLLLLFLVMKARMHAFLALMVVSMGAGLFSG
                     MPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSREH
                     YAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVP
                     GPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHL
                     GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV
                     AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT
                     GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAG
                     GSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIAFQLLS"
     gene            complement(12962..13489)
                     /gene="gntK"
                     /locus_tag="OQQ76_002066"
     CDS             complement(12962..13489)
                     /gene="gntK"
                     /locus_tag="OQQ76_002066"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417894.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HCS1968566.1"
                     /translation="MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP
                     RCNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGN
                     PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL
                     EGVVASTIEVIKKGK"
     gene            complement(13628..14623)
                     /gene="gntR"
                     /locus_tag="OQQ76_002067"
     CDS             complement(13628..14623)
                     /gene="gntR"
                     /locus_tag="OQQ76_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001693277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HCS1968567.1"
                     /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL
                     DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYG
                     YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
                     GFDNFEAARQMTTAIIARGHCHIAYLGARLDERTIIKQKGYEQAMLDAGLVSYSVMVE
                     QSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHG
                     HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKMLDLGFTLSPGGSI"
     gene            complement(14847..15542)
                     /gene="yhhW"
                     /locus_tag="OQQ76_002068"
     CDS             complement(14847..15542)
                     /gene="yhhW"
                     /locus_tag="OQQ76_002068"
                     /EC_number="1.13.11.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004213399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quercetin 2,3-dioxygenase"
                     /protein_id="HCS1968568.1"
                     /translation="MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVIN
                     DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHS
                     EYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDM
                     ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHAD
                     SDSEVLLFDLPPV"
     gene            complement(15665..16591)
                     /locus_tag="OQQ76_002069"
     CDS             complement(15665..16591)
                     /locus_tag="OQQ76_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1968569.1"
                     /translation="MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ
                     APIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL
                     AQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA
                     ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD
                     LKAIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGA
                     PNYVKESEVLTNLEILERGFEQASPSTVTLAN"
     gene            16923..17411
                     /gene="yhhY"
                     /locus_tag="OQQ76_002070"
     CDS             16923..17411
                     /gene="yhhY"
                     /locus_tag="OQQ76_002070"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1968570.1"
                     /translation="MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQER
                     LADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMRE
                     MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR
                     VK"
     gene            17648..>18799
                     /locus_tag="OQQ76_002071"
     CDS             17648..>18799
                     /locus_tag="OQQ76_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp1 family type VI secretion system effector"
                     /protein_id="HCS1968571.1"
                     /translation="MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSL
                     LNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYY
                     YIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFL
                     PNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEK
                     TAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLA
                     NLRKEFNKTVRKNFLIKLAKTSEASGRFNAEDLLRMRKGNVPLNYNVHHKLSLDDGGT
                     NDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPPM"
BASE COUNT         4800 a         4970 c         4581 g         4448 t
ORIGIN      
        1 ctctttggcc ccgttctatt tattggtgaa cttacaatct caccggatcg atatgccaga
       61 tatgatcggc gtactctttg atagtacggt cagaagagaa gtagcccata ttggcaatgt
      121 tcagcatcgc ttttgcggtc cactcttcct gaagctcgta gagttcgtcg actttatcct
      181 gacaatcgac atagctgcga taatccgcca gaacctgata gtgatcgccg aagttgatca
      241 gcgaatcaac cagatcgcga tagcgacccg gatcttccgg actgaataca ccgctgccga
      301 tttgcgtcag cacctgatgc agctcctcat ctttctcgta gtattcacgc ggtttgtagc
      361 cctgacgacg cagttcttcc acttcttccg ctgtgttacc aaaaataaag atattgtcag
      421 caccgacatg atccagcatc tcgacattcg caccgtccaa cgtaccgata gtcagcgcac
      481 cgttaagcgc aaacttcatg ttactggtgc cggaagcttc cgtccctgcc agcgaaatct
      541 gttcagacag atctgccgcc ggaatgatca actgcgccag gctaacgctg tagttcggga
      601 tgaacacgac tttcagctta tcgccaatct gcggatcgtt gttgatcact ttcgctacgt
      661 cattgatcaa atgaataatg tgcttcgcca tgtaataggc cgaagccgcc ttaccgccaa
      721 aaatattcac gcgcggtacc cacttcgcat ccgggtcggc cttgatgcgg ttatagcggg
      781 taatcacatg caacacattc atcaattgac gtttgtattc gtgaatacgt ttgatttgta
      841 catcgaacaa cgcctttgga ttcaccacca cattcagctg ctgggcgata tactctgcca
      901 gacgcttttt gttctccagc ttcgcctgat gcacagcgtg attaaccatt gggaaatcac
      961 agtgttgttg cagctcatta agcaggctaa ggtcggtgcg ccagttacgg cccaggtgtt
     1021 cgtccagcac ggctgaaagc gatgggttcg ctaccgctag ccagcgacgc ggcgtcacac
     1081 cgttggtgac gttggtgaaa cgacccggga agattttcgc aaagtcggca aacaacgatt
     1141 gcaccatcag attagagtgc agttccgata caccgttaac tttgtggctc acaacaaccg
     1201 ccagccaggc catacgcaca cgacgaccgt tggattcatc aatgatcgac gcccgtccca
     1261 gcagatcggt atcgttcgga tactgttcct gcaaggtttt caggaaatag tcgttgattt
     1321 caaagatgat ctgcaggtga cgcggcagaa ttttacccag catatcaacc ggccaggttt
     1381 ccagcgcctc gctcatcagc gtgtggttag tgtaggagaa gacctgacaa cacacctcaa
     1441 acgcgtcgtc ccagctaaat tggtgctcat cgatcagcag acgcatcatc tcaggaatcg
     1501 acagtaccgg atgggtatca ttgagatgaa tcgcgatttt atccgccagg ttatcgtagg
     1561 ttttatgcaa ctgataatgg cggcttaaaa tgtcctgaat ggtcgaggaa accagaaagt
     1621 attcctgacg caggcgcagc tcacgcccgg agtaggtgga gtcatccgga tacagtacgc
     1681 gagatacgtt ctcggagtgg tttttatctt ccactgccgc gaagtagtca ccttggttga
     1741 atttaccgag gttaatttcg ctactggctt gcgcactcca caaacgcaac gtgttggtcg
     1801 cgtcggtgtc gtaaccaggg attatctgat cgtaagcgac tcccagaatc tcttcggttt
     1861 caatccagcg cgttttttta ccttcctgct gaatgcgacc accaaaacgg actttatagc
     1921 gcgtgttgtg gcgtttgaat tcccacgggt taccgtattc cagccagtag tctggcgact
     1981 ctttctggct accgttaacg atgttctgct tgaacatacc gtagtcatag cggatgccgt
     2041 aaccgcgccc cggcaaccct aacgtcgcca gagaatcaag gaagcaagcc gccagacgtc
     2101 ccaggccacc gttaccgagg cctgggtcat tttcttcatc aatcagctct tcgagattta
     2161 accccatcgc ttccagtgcg ccctgtacat cttcgtaaat tcctagcgac aacatggcgt
     2221 tggagagcgt acggccaatc aaaaactcca tcgacaggta gtaaacctga cgagtttctt
     2281 gcgacaactg ggcacggttt gaacgtaacc agcgctccac gagacgatcg cgcacagcaa
     2341 ataacgttgc gttcagccat tcatgtttat tggcgacgac cgggtccttt ccaatcgtaa
     2401 acatcagctt gtaagcgata gagtgcttaa gagcttctac gctaagcgtg ggcgatgaat
     2461 atgtaaacgg agcattcata taggcgtttc ctgaaaacta tttcaagcga tagtaaagct
     2521 cacggtacga cttcgccgcg acctgccagc taaaatccat tgccatagcc tgacgttgca
     2581 caaaccgcca cagtgaagga cgagaccaca gtacaaaagc acgtcgaata gcccgtaaca
     2641 gcgaccaggc attactatct tcaaagacaa acccactggc gacgccatct gcaaggttct
     2701 caagagaaca gtcagaaacc gtatcagcaa gcccaccggt gcgccgcact aacggcagcg
     2761 taccgtactt caatccataa agttgcgtta agccgcacgg ttcaaaacgg ctgggcacca
     2821 gaatgacgtc cgcgccgccc ataatgcgat gcgaaaatgc ttcgtgatag ccaatctgaa
     2881 cgcccacctg gccggggtat tccgctgccg ccgcaaggaa accttcctgc agcaccggat
     2941 cgcccgcgcc gagtagcgcc agctgcccgc cctgctccag aagacccggt aaggcttcca
     3001 gcaccaggtc gagacctttc tggctggtca gacggctcac cactgcaaaa agcggcactt
     3061 tatcgtcaac cttaagcccc attgcgattt gtaactggcg cttattttcc gctttatctt
     3121 ccaacgtatc gcgggtgtaa cgcgaggcca acagtaagtc cgtctctgga ctccagattt
     3181 tctcgtccac gccgttcagt acgccggaaa gacgcccttc acggtgacgc tgttgcaaca
     3241 gaccttccat accgtaggca aactgcggtt cggtgatctc gcgagcgtag gttggactga
     3301 ccgccgtaat gtgatcggca tagtacagac cggccttcag gaaagagatt tgtccgttga
     3361 attccagccc atgaatatta aagaatgacc atggcaattg gatgtcattc atgtgatgtg
     3421 cataaaacat gccttgatag gccaagttgt gcacagtaaa caccgacttc gccggacgcc
     3481 cgcgcgccgc cagatacgca ggcgcaaggc ctgcatgcca gtcgtgcgca tgcaccacat
     3541 caggacgcca gaatgggtca agcccgctgg ccatttctgc cccaacccac cccagcagcg
     3601 caaaacgcaa tacgttgtcg gtataggcaa ataagttggt atcgtgatac gggcttcccg
     3661 gacgatcata gagatgcggc gcgtcaatca ggtatatgcc aaccccgttg taatgaccga
     3721 acaacagcgt gatatgtccg gcgaaggtat cacgacggga tactacctgc gcatcggtca
     3781 cgccacggcg aatatcggga aatgcaggca acagtacgcg agcgtcaacg ccgtctgcga
     3841 tttgtgctgc gggtaatgcc ccaataacat cagccagacc gccggtttta agcagcggga
     3901 acatctctga acatacatgt aaaacttgca ttatcgctcc tgtttatgcc ctaacttccg
     3961 tagcatttcg cgcgttacca gcacgatgcc ttcttctgaa cgatagaaac gacgtgcatc
     4021 ttcctctgcg ttttcaccaa tcaccatgcc ttccgggata acacaagcac gatcgatgac
     4081 gcagcggcgc agacggcacg agcgacctac ccatacttcc ggtaacaata cggcggaatc
     4141 aatgttgcag aatgaattca cgcgaacgcg cgagaacaga acggactgca ccaccaccga
     4201 accggagatc acacaaccgc cggataccag tgagttaagg gtcatcccgt ggctaccgga
     4261 gcgatcctgc acgaatttcg ctggcggtaa tgattcattg taggtgcgaa ttggccaatt
     4321 gcgatcgtac atatccagtt ccggcaccac agaggccaga tcgagattcg ctttccagta
     4381 agctttcagc gtacccacat cgcgccagta cggctcggca tccgggtcgg attgtacgca
     4441 agagagcggg aacgggtgcg cataggccag accggcttcg gtgatcttgg gaatcaaatc
     4501 tttgccaaag tcgtggctgg agttctcatc acgatcgtct tcttccagca gttcatacag
     4561 atagtcggcg tcaaagacgt agatacccat actcgccaga gatttgctcg gatcgttcgg
     4621 cattgacggt gggttagcag gtttttcaac gaattcgata attttatcgt tctcatcaac
     4681 cgccataacg ccaaatgcgg aggcttcttc aatcggtact ggcatacaag caacggtgca
     4741 acgtgcgcct ttttcgacgt gatcgataag catacgcgag tagtcttgct tgtagatatg
     4801 gtcgcccgcc aggatcacca cgtattccgc tttataacgg cggataatgt cgaggttttg
     4861 ggtgaccgca tctgcggtgc cgcgatacca gttttcccct ttcattctct gctgtgctgg
     4921 cagcagatcg acaaactcgt tcatttcttc attgaagaat gaccagccgc gctgaatgtg
     4981 ctgcaccaga gtgtgggact ggtactgggt gatcacgccc atacgacgga tcccggagtt
     5041 gatgcagtta gacagcgcaa agtcgataat gcggaactta ccgccgaagt gtacggccgg
     5101 ttttgctctc ttattggtta aatccttcag gcgggtacca cgtcctcccg ccagtatcag
     5161 ggcaacagat ttcaatggca gctggcgcgc caacattaag tgatcgttct tctctaaact
     5221 aaccatgact aactcctttt ttatcatctc tggaacacac acaatccgtg tgcaggtccc
     5281 tgccagacag ccgtaatcac tgggttatcc tctccagcga atgggggaat ggcgtgccac
     5341 tccccagcag gtaaaacaat ctctgttacc tcaagcgtgg cgttaattgc gatcaaaaag
     5401 cgatccgaga gcagaatttg cagctgtttc ggcccgtttt gccactcatc cgtgcttaaa
     5461 ggttgagcat atcgatttag ccaacggaca ttgccatcgc cttcttccca ccagcgattc
     5521 tccaccaaag cgggaatgcg cttgcgcaga tggattaacg cggcggtaaa tgcggttaaa
     5581 ccactgcttg cctgcgacca gtccaaccag gttaattggt tatcctgaca gtaggcattg
     5641 ttattgccat gctggctgtg accatgttcg tcaccggcca gtaacatcgg cgtaccctgg
     5701 gagagcaaca acgttgttaa caaggcgtga atactgtcgc gccgccgttc aaccaggtca
     5761 agagaaccgc ctaacccttc tttaccatga ttgttactgt aattgttgtt ggtcccgtcg
     5821 cgattttctt ctccgtttgc ttcattgtgt ttatggttga agcaaacgca gtcgcgaagc
     5881 gtaaaaccgt catgcgcagt gacgagatta atcgcggcac tcggcagacg accattacgt
     5941 ttaaaaacat cgctggaggc agcaaaacgc ccggcaaacg cccccagagg caaatcataa
     6001 tgtagccaga aacgacgggc agcatcgcgg aaatgatcgt tccactcggc aaacagcggc
     6061 gggaaatttc ccacctgata accaccaggg gcgatatccc acggttcagc aattaacttc
     6121 acctgcgaga gcaccgggca gttctggata gcggtaaaca acggcgcatc ctgacggaac
     6181 tctggcgtac ggcccatgac tgccgccaga tcaaagcgga aaccatcgac gtgacaggtt
     6241 tctacccaat aacgcaggca ggcgctggca taatccacca ccgccggatg actcaaattg
     6301 agcgtgttgc cgcaaccggt ccagttgtga taatcgccgt cttctcttat ccaataatag
     6361 ctacggttat cgatcccacg cagtgagaat aacgggccgt cgaggtccag ttccgcacta
     6421 tggttgagca cgatatcaag aatgacttcg atacccgctt tatgcagtgc tttgattgca
     6481 tcgcgaaact catccagcgc cgtttctggc gagcaggcat acgccggatg cagcgcaaac
     6541 atcgccaccg ggttgtaacc ccagtagtta cttagcccca tgcgttgcag acgtggttca
     6601 ctggcaaact gcgccactgg cagcagttcc agcgcggtaa tgcccaattg tttcaaatag
     6661 ttgatcatca ccggatgccc gagggcttta taagtgccac ggatctcgac cggaatctcc
     6721 gggtgcaagt acgttaatcc tttgacatgg gcttcataaa tgatggtgct gccccacggc
     6781 gtgcgcggcg gggcatcatc ttcccagtca tagtgatcaa ccaccactac gcatttcggc
     6841 gcaatggcgg cgttgtcgcg atagtcaggt tcattatgac cggcgtgcag cagcgggtta
     6901 tctttaaact ccccgtcaat ttgccgcgcg caaggatcaa tcaacaactt cgccgggtta
     6961 aagcgatgcc cctcggcggg ttgccagggg ccatgaacgc gataaccata acgcaaaccc
     7021 gggcgcgcat ccggcagata accgtgccaa atgtcgccac tgtgccctgg caagtcatag
     7081 cgatgttcct ggccattggc gtcaaagaca cacagttcta cccgctcggc atgagcggag
     7141 aaaagtgtga agttgacgcc ctgaccgtcg taatgcgcgc cgaggggagc gggtttgcca
     7201 atggcgagct gtgtcattct gcctcccgaa ccagccagat agtggccagc ggtggtagtg
     7261 tcaggcttag tgaatgctga cgaccgtggc tggcaatctc atcgctgtgt accgtgccgc
     7321 cattgcctgc attactgccg tgatagtgca tggaatcggt attgaggatt tcacgccatt
     7381 tgcctggctg attaatgccg aagcgataat catgacgcgg caccggcgta aagttactgg
     7441 caacgataat ttcgttaccc tctttatcgc gacgcacaaa gatcagcacc gagcgttctt
     7501 tgtcatccac caccagccat tcaaagccgt acgggtcaaa atccagttca tgcattgctt
     7561 tatggtggcg gtaggtgagg ttcagatcgc gcaccagacg ctggacaccg tggtgccagt
     7621 tatcgccacc ttccaacaga tgccagtcga ggctggcgtc atggttccac tcacggccct
     7681 gggcaaattc gttccccatg aacagcagtt tcttgcccgg gaatgcccac atccagccat
     7741 agtaggcgcg caggttagcg aatttctgcc atgcgtcgcc cggcatgcgg tcgagaatcg
     7801 attttttacc gtggaccact tcatcatgcg acaacggcag gacgaagttt tcagtgtagt
     7861 tgtagagaat cccgaaggtg agtttatcgt gatgatactg acgataaacc gggtcgagct
     7921 tcatgtagtc cagggtgtca tgcatccagc cgaggttcca cttgtaccag aagcccagac
     7981 cgcccatatc ctgcggacga gaaacgccag ggaaatcggt agactcctca gccattgtca
     8041 ccgcaccgga aacctgctca ccaagaatac ggttggtatt acgcaagaat tcaatcgctt
     8101 caagattctc gcgcccgcca aattcgttcg ggatccactc cccctcttta cggctgtagt
     8161 cgcgataaat cattgacgcc accgcatcga cgcgcagcgc atcaatacca aaacgttcaa
     8221 tccagtaaag cgcgttaccg acgaggaagt tactgacttc acggcgacca taattgtaga
     8281 tcagcgtatt ccagtcctga tgatagcctt cgcgcggatc gctgtgttca tacaagttcg
     8341 tgccatcaaa ttcggcaagc gcaaagtcat cggtcgggaa gtggcctggc acccagtcga
     8401 gaatcacgtt cagacccgct gcgtgtgcgg catcaatgaa ataacggaag tcgtcgcgag
     8461 taccaaaacg gcgggttggt gcatacaggc cggttggctg ataaccccaa ctgccatcga
     8521 agggatgctc gttaatgggc agtagttcga ggtgggtaaa gcccatccat ttagcataag
     8581 gcaccagttg atcggccagc tcgcggtagc tcaaccagaa attgttatcg gtgtggcgac
     8641 gccaggagcc caggtgaact tcataaatag agattgacgc atcaaactga ttcgcttttt
     8701 tgcgctcttc agtctgtaca accttttccg gcagcccgca aataagagac gcggtttccg
     8761 ggcgcatttg cgcttcgaag gcataaggat cggacttcag acgcaagttg ccattggcat
     8821 caatcatctc gtatttatag agctgaccgt tatgcgcccc agggataaac agttcccaaa
     8881 tgccgctctc tttacgcaga cgcatcgggt gacggcgacc gtcccagtag ttgaattgcc
     8941 caaccaccga gacccgacgg gcgtttggag cccaaacaga gaaacgcgta cctgtgacgc
     9001 catccatagt atctgcatgc gcgcctaagg tttcatacgg gcgcaggtga gtaccttcag
     9061 ataatagcca ggcatccatt tcctggatta gcgggccaaa acggtaagga tcatcaatca
     9121 ggttttgctg accatgccag acaacagcca actgatagcg gaaaaaattc ttacgtcgcg
     9181 gaatgacacc gctaaagaat ccccgtgagt caagacactc cagttttgcg agtttgcgcc
     9241 cggttttcgg ttcaatcacc cacacatcgg tagcgtcggg taaaagggca cggacttcca
     9301 gtcccgcggt ggttttatgc attcctagta cggaaaaagg atccgcaaaa tggcctgcaa
     9361 ttagcgcgtt aatcacgtct ctatcgatac gatcggacat gcttgtcttc ctgttttatt
     9421 gtgtcacccc atccaattgg atttttgact tctggttgtg acattttttt gacctgaacg
     9481 gcgcagcact ctgtgcatcc tctctgcgtc gtcctcactt caggtaaggc tgtgaatact
     9541 catgtattca gccaccctta aagaatagcc aatgctctat ttaactcccg gtaaatcatg
     9601 aaacatctgc gcttactcct gtattacgca ctaacagggg cggcatcgcg ccccagattt
     9661 aatgaataaa gattacgcca gttgacgaag catccgacgc agcggctccg cggcccccca
     9721 cagcagctgg tcacccacgg taaaggctga caggaactcc ggtcccatat tcagcttacg
     9781 caggcggcct accggcgtgg tcagcgtgcc ggtaacggca gctggggtta gctcacgcat
     9841 agtgatttcc cgatcgttcg gaacgacttt cgcccacgga ttgtgcgcag ccagcagttc
     9901 ttcgacggtc ggaatagaca catctttttt caatttaata gtgaatgcct ggctgtggca
     9961 gcgcaatgcc ccgacacgca cacataaacc atctaccgga attacggaag atgtgttgag
    10021 gatcttgttg gtttccgcct gccctttcca ctcttcgcgg ctctgaccgt tatcgagctg
    10081 tttgtcgatc cacggaatca ggctacccgc cagcggcacg ccaaagttat ccaccggcag
    10141 ctcaccgcta cgggttaagg ttgtgacttt gcgttcgata tcgagaatag cagaggacgg
    10201 ggtcgcgagt tcatctgcca catggccata cagatggccc atctgggtta ataactcacg
    10261 catatgtcgc gcaccaccgc cggaagcggc ctggtaggtt gcaacggaca cccaatcaac
    10321 aagatcattg gcgaataaac cacccaacga catcaacatc aggcttacgg tacagttacc
    10381 gccaacaaaa gtcctgatgc cattatttaa tccgtcggta atgacgtcct gattgacggg
    10441 gtcaagaatg atgatggcgt catctttcat gcgcagagac gatgctgcgt caatccagta
    10501 accttgccat ccgctttcac gaagctttgg atagatttcg ttggtataat cgccgccctg
    10561 acaggtcaca atgatatcga gggcctttag cgcctccaga tcaaaggcat cctgaagtgt
    10621 gccagtggtt ccgccaaaag acggcgcagc ctggccaagc tgagaagtag aaaagaagac
    10681 agggcgaatg gcgttgaagt cgcgctcttc aaccatgcgt tgcatgagaa cggagccgac
    10741 cataccgcgc cagccgataa aaccaacatt tttcataagc gttttttcct gcaaagatgt
    10801 gtgctgtata aatgtgccgg tctcctcttg gcacatcttt caccatacaa aaagcagcca
    10861 aagtcgcaag tgaaattaat caatgatagc gaagccatca gtaatgcgac ttatcctgct
    10921 ttgttagcac acagaaagtc cgcggcaatt atcagggaat ttgagttatg aatgaaatca
    10981 tttctgcagc agttttattg atcctgatta tggatccgct cggaaacctg cctattttca
    11041 tgtccgtact gaaacatact gaaccgaaaa gacggcgggc aatcatggtg cgagagttgc
    11101 ttattgctct cctggtgatg ctggtgttcc tgtttgcggg tgagaaaatt ctggcatttc
    11161 tcagcctgcg agcagaaacc gtctccattt ctggcggcat cattctgttt ttaatcgcca
    11221 ttaagatgat tttccccagc gcttcaggaa atagcagcgg gcttccggca ggtgaagagc
    11281 catttatcgt gccgttggca attccgttag tcgccgggcc gactattctc gccacgctga
    11341 tgttgttgtc tcatcagtac ccgaatcaga tgggacatct ggtgattgct ctgctgctgg
    11401 cctggggcgg cacctttgtc atcctgctac agtcttcgct atttttacgt ctgctgggcg
    11461 agaaaggggt gaacgcactt gaacgcctga tgggattgat tctggtgatg atggcaaccc
    11521 agatgttcct cgacggcatt cgaatgtgga tgaaggggta acgaggagag tttttcgaaa
    11581 agaacccggt agcgtcacaa ctaccgggcg aacaaactta actcaacagc tggaacgcaa
    11641 tcatcccaac gatggcacca acagtgccga ggatggtttc catcatggtc caggttttca
    11701 gcgtttcggc ttcggtcgcg ccggtaaatt taccgaacaa ccagaaaccg gcgtcgttaa
    11761 cgtggctgac aacaatcgaa ccaccagcga tacaaatcga cagtgccgcc atttgcgcac
    11821 cggagtagtt cagttgttca atgaccggca tcaccagccc caccgccgtt aaacaggcaa
    11881 cggtggcaga cccctgaatg atgcgcactg cagcggccag cacgaagcag gtgatagcaa
    11941 tcggcaggcc catgccggtt aacgcttcgc ccagtgccgg acctacgcca gagtcaacca
    12001 gcacctgttt gaacacgccg cctgcaccaa tcaccagcag aatgatcccc gccggttgta
    12061 gcgcgtgacc gcaaatctcc atcactttgt cttttggcat gccctgacgc attgccaggc
    12121 cataaatcgc taccagacaa gcaaccagaa tcgcggtaaa tggatgacca ataaactcga
    12181 accattcgta agcagttgat ccttctggca caaaacgagc ggcaatggtt ttcagcccca
    12241 ccagcaccag cggcaacagg atcagcgaca ggctgaatcc gaaggacggc attttgcctt
    12301 cgccgagatg cggttcgctg atgtcgtcag gaatatgcaa ctccacgtaa cggctgatga
    12361 aattacccca cagcggcccg gcaataatca ttcccggaat tgccgcacac agaccaatca
    12421 ggatcatcca gccaaagtcg gcattcatct gcgatgccag cagcatcggc gctggtccag
    12481 gcaccagaaa tgccgccgct gccgccacgc ctgcgaataa tgggattacc agcttcacca
    12541 ggttcgtacc ggtgtggcgc gccattgaga aagcaacgct aatcagcaga actatcgcca
    12601 cttcaaagaa cagcggtagc gcacagacca accccgcaag gccgatggca taatgctcgc
    12661 ggctgtgacc gaaggatttg agcattttga cggcaatctg atcgactgcg ccggtttcat
    12721 gtaagatctt gccaaacata gctcccaggg cgacaaccac cgccaggaag ccgagggtgc
    12781 ctcccatccc tttttccatc gtcgctgcga ttttatcgag cggcataccg gaaaaaaggc
    12841 cagcccccat ggacaccacc atcaaagcca ggaaagcgtg catacgcgcc ttcatgacta
    12901 aaaacagcag cagtaaaaca gaccctactg ctgttaaaac aagcgttaat gtagtcacta
    12961 cttatttgcc ttttttaata acctcaatgg tgcttgccac aacaccttcc agcggttgat
    13021 cgatatccac caccagtaca tcggtttcgt ccgcacccgg ctcctgcagc gtttcaaact
    13081 gcgtcaccaa catttgggtt ttaaagaaat ggcctttgcg cgctttcaag cgactttcaa
    13141 tcacatcaaa atcgcctttc aggtagatga aagagagatt cggattacct tcacgcagca
    13201 agtcgcgata gtgctttttc agtgcagaac agacgatcag cgacacttta ttggtgcgct
    13261 gcatagcaaa cgcggcgtcg ttcagcgcct gcaaccaggg tttgcgatcg tcgtcattca
    13321 gcggttcgcc agacgccatt ttttcgatat tgcaccgtgg atggaggaaa tcgccatcaa
    13381 gaaacgcggc atgaagttga tgcgccactt cactggcgac cgcagatttg ccgctgcccg
    13441 atacgcccat caagacgtaa atgtggtgat catggttagt cgtgctcaaa gtggtgcccc
    13501 cacaatacaa gaattaaaaa tgttacgggt aactgttatc ggtaacattg tccagccgga
    13561 caatatcaga agcaatatcc atccgtgcct taagtgtata agtgtgagct acttcaaatt
    13621 tgtaggctta aatagatccg cccggtgaca aggtgaaacc taaatctaac attttcggtg
    13681 tcacagattc gccacgaata cgcgccagca ggcgttcagc gccaatactg cccatccgct
    13741 cacgcggcgt cagcacgctc gctaaccgcg gctccatcac ctggccaatg tcatgaccgt
    13801 ggaaaccggc aatcgccata tcgtcaggaa ccttcaatcc cagacgctga cattcaaacg
    13861 ccgcgccgac cgccaggtca tcgttggtac agaacacgcc atccagctgc ggatattccc
    13921 gccgcgcctg gcgaatcagt tcaataccgg aagagtaaga agaagattgc tcaaccatca
    13981 cgctatacga caccagacct gcatccagca tcgcctgttc gtatcccttc tgtttgatga
    14041 tagtacgttc gtcgagacgc gcgccgagat aggcaatgtg gcaatgcccg cgagcaataa
    14101 tggcggtggt catctggcgt gccgcttcaa agttatcaaa accgacggcg atatcgaggc
    14161 acggcgactg gctgtccatg agttccacca ccgggatccc cgccacttca atcatcttta
    14221 aggtgcgcgg cgtgtgggta cgttcggtga ggatcagtcc gtcgatattc catgagagca
    14281 tggattcgag acgttcttgc tccatttccg gtttataacc gtagtgagcc agcatggtct
    14341 gataaccgtg cgcgtcggtg acgctttcga ttccgcgtaa tacttccgcg aaaacctggt
    14401 tggtgagaga aggtaacagg acgccaatcg cccggctggt ggcgttagag aggatatcgg
    14461 gcgcacgatt gggaatatag cccagttcat caagagcggc ggcaatcttg ccgcgtagag
    14521 cgacggaaac ctgctccggg ttgcgtaaaa aacggctgac cgtcattttg gtcacgccta
    14581 cacggtcagc cacatcctga agtacgggtc ttttcttttt catcgtcctg aaggtacaaa
    14641 agagatagat tctcttagtt taacacggac gcatcagaac cttcccgggg aaaacagtgc
    14701 ttgtttacaa ttattagata tacactaaat caattgcatc gcattgtgct aacgacgcgg
    14761 caaaaccccg gaagcgtgca tcagcacgcg gccggagcga gcgaggaagc ctgcaaaaag
    14821 gcaggcttca aagatgccgt tgagttttaa accggcggca gatcgaacag taacacttcg
    14881 ctgtcgctat ccgcatggat ggagattgcc tgctcatccc agattgccag accatcgctg
    14941 gtcgaggctt tcacgccgtt aatggtgaca ttgcctttca ccacctggat ccagacgcgg
    15001 cgttcagcgg caatctgatg caccgactgc tcatctttca gcaacgccca gcggtacagt
    15061 tccatatcct gatgcacttt caatgaacca tctcgcgcat ccggcgagag caccagctgt
    15121 ttgccctgta cggcatcgaa gcgacgctgt tcataacgcg gcgtaatacc gttttcttca
    15181 ggcatgatcc agatctgata cagatgcaga cgctcggtgc tgcttgggtt gtactctgag
    15241 tgacgaatac ccgtacccgc actcataatc tggaactcac ccgccggaac ctgctcttta
    15301 ttgcccatgc tgtcctgatg ctcaacagta ccttccagca cgtaggtcaa aatttccata
    15361 tctttatgcg ggtgagtgcc gaagccctgc cctgcttcaa tcacgtcgtc gttaatcacg
    15421 cgcagcgcgg agaagcccat aaagttcgga tcgtaatagt tggcaaaaga gaaagtatgc
    15481 caggaatcca gccagccatg atttgcatga ccacgttcat ttgctttgcg taagtagatc
    15541 atttgtattc gccccctgaa tgatttcgat gggcttagtg tggacccgat ctgcctggga
    15601 tgatagaggg tgaaaattgc cccctctgtt caaaaaaatt gaactattcg aggggccatc
    15661 aaacttaatt cgcgagagtc actgtggagg gagaggcttg ctcaaatccg cgttcaagga
    15721 tttccagatt ggtaagaact tcagattcct tgacgtaatt tggcgcaccg accgaatcat
    15781 ccgctgcgaa tcccggttcg cccggcataa tattagcctt caggctggtt tcctgctggt
    15841 cgataccgta tttaataaac gaacctttct taccgtgaac gataaatttc ggataatcga
    15901 ttttcaccag atggctggtt ttgacgatgg ctttcaggtc gccataaaac agttgcgctt
    15961 caaaggtgtc gtcaggattg gctttattac gcaggctgcg gatgtcataa gcgacgtgat
    16021 ccgggcgacc gaacagagaa ataatctggt ccatcgtatg cacaccaagg ccataaaacg
    16081 cgccatcctg cggcagccca ggtttggttt ctgccaccgg gcggtaatag tcaaaatggc
    16141 tttccacttc aacaatctct cccaacttgc cactttcaat cgcttttttc gctgtcagga
    16201 agcaggagtc aaagcgacga ttctgatacg gcgtgacggt cagccctttg cttttcgcca
    16261 acgcaaacag ctccttcgcc tgggcaagcg tcggggtgaa cggtttttcg accagcacat
    16321 ttttcccggc ttccagcgcg cgtttcgcgt actcgaaatg gctgtccgcg tgggtgcaga
    16381 caacaaccag cttaacatcg ggatcgttta gtacttcgtc gagatcgctg gtgaaatgga
    16441 tatgggaata aatgggagcc tgttcttccg gcttcgcatg gcgacgaaaa atatgcgcga
    16501 catgccagct atccttgcgg ttaagtacat acggcagatg gtaacgggtg gtgcttttgc
    16561 cgaagccaat aaaggcgcag ttgatgacca tgatttcgtc ctttttaagg tggttattta
    16621 caccttagcg caaagcggac gtggttccta ctggagtgcg cataacgaac acaagcactc
    16681 ccgtggataa attgagaacg aaagatcaaa aaaaagccag cacccggctg gctaagtaat
    16741 actggaagca atgtgagcaa tgtcgtgctt tcaggttctc cgcgagggtc ttcctgatcg
    16801 cgagacaata ataatcattc tcattcgcac ttgtccaaca ctttttgcaa aaaaatgcat
    16861 ttgactcgca tttgaaagtc aatgatgttg aaagggacat ttaccccaaa gaggacaaag
    16921 gaatgagtga gatagtaata cgccacgcag aaacacggga ttacgaggcc atcaggcaga
    16981 ttcacgccca gccggaggtg tattgcaaca cactacaggt gcctcatcct tccgatcata
    17041 tgtggcagga gcgactcgcc gatcgtcccg gcatcaagca actcgtcgcc tgtattgatg
    17101 gagacgtcgt gggccatctc accattgacg tgcaacagcg cccacgccgc agtcatgttg
    17161 ccgattttgg tatctgtgtc gactctcgtt ggaagaaccg cggcgtcgcc agcgccctga
    17221 tgcgagagat gattgaaatg tgcgacaact ggttgcgggt agatcgcatt gaactaaccg
    17281 tgtttgtcga taacgccccg gcaattaagg tctataaaaa atacggcttt gaaattgaag
    17341 ggactggtaa gaagtacgca ttgcgtaatg gtgaatatgt cgatgcatat tatatggcgc
    17401 gggtgaagta agatagtgcc ctttttctga gatggaaaaa gggtgtcatt caaaatcgac
    17461 ataccttcct ttaaggtatt tatttaccca atacatatat tgagatttaa ctcataatta
    17521 cttcctaaag tgtaatattt tattttttaa tatatacgcc tacaatttcc tggagtaaat
    17581 aaataacaat taacaagcat aatattgcca ttgataaaat agcatgccat aaaaggactt
    17641 ttcagggatg agtaatattg tttacctgac agtaacggga gaacaacaag gaagcatctc
    17701 cgcaggttgt gggacttctg agtctacagg taatcgttgg cagagcgggc atgaggatga
    17761 aatatttaca ttctcactct taaataatat taataatacg gggcttggtt cacagttcca
    17821 tggtataaca ttttgtaaat taattgataa aagcactcca ttatttatta attccattaa
    17881 caataatgaa caattattta tgggatttga cttctatcga ataaatagat ttggtagatt
    17941 ggaaaagtat tattatatac aactaagagg cgctttttta tcggctattc atcaccagat
    18001 cattgaaaac caactggata cagaaacaat aactattagt tatgaattta tcctctgtca
    18061 acatcttatc gcaaataccg agttcagcta tttggcactc cctgaaaatt ataaccgttt
    18121 gtttttacca aattcaaaaa accaaacaaa taatcgtttc aaaacgttaa acagcaaagc
    18181 tattggcagg ctacttgctg ctggtggcgt atacaatggg aacattgaag gattcagaga
    18241 tactgcggaa aaactgggtg gagatgcaat aaaaggctat gatcaaatac taaatgaaaa
    18301 aacagcgggc atagcgatag caacagcatc tattctttta acaaagcgtt ctaatgttga
    18361 tacatataca gaaataaata gttacttagg caaacttaga ggtcaacaaa aacttcttga
    18421 tggtatagac ataatagaaa taatatacat taagagacct tcaaaagact tagctaactt
    18481 acgaaaggag tttaataaaa ctgtaagaaa aaattttctt attaaacttg caaaaacctc
    18541 cgaagcatct ggaagattca acgccgaaga ccttttaaga atgagaaagg gcaatgttcc
    18601 tctaaattat aatgttcacc ataaactatc tctagatgat ggtggtacta atgatttcga
    18661 aaatttagta ttaatcgaaa acgaaccata tcataaagtt tttactaaca tgcaatcacg
    18721 aatagctaag ggaatattag taggtgaaag caaaatcact ccctgggcca ttccatctgg
    18781 ctcaatttat cctcccatg
//
LOCUS       DAJVUN010000070        18565 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.070, whole genome shotgun sequence.
ACCESSION   DAJVUN010000070 DAJVUN010000000
VERSION     DAJVUN010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18565)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18565)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18565
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.070"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..884
                     /locus_tag="OQQ76_002072"
     CDS             <1..884
                     /locus_tag="OQQ76_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1968572.1"
                     /translation="IKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFITIGV
                     LGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNARRDPLSFAEWRSLFRNRTMWGM
                     MLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMAAIPFLFGAAGMLVNGYVTDWL
                     VKGGMAPIKSRKICIIAGMFCSAAFTLIVPQATTSMTAVLLIGMALFCIHFAGTSCWG
                     LIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTAAGA
                     LAYIFLVRQPINDPRKD"
     gene            complement(933..2588)
                     /gene="tsr"
                     /locus_tag="OQQ76_002073"
     CDS             complement(933..2588)
                     /gene="tsr"
                     /locus_tag="OQQ76_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HCS1968573.1"
                     /translation="MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQ
                     TIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAE
                     KNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ
                     DGFEKQYVAYMEQNDRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASL
                     VAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANA
                     IYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS
                     ETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ
                     GRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVT
                     RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRL
                     TEAVAVFRIQQQQRETSAVVKTVTPAAPRKMAVADSEENWETF"
     gene            complement(2707..3153)
                     /gene="hpaR"
                     /locus_tag="OQQ76_002074"
     CDS             complement(2707..3153)
                     /gene="hpaR"
                     /locus_tag="OQQ76_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoprotocatechuate degradation operon regulator
                     HpaR"
                     /protein_id="HCS1968574.1"
                     /translation="MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESP
                     SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRA
                     QTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEAIPGDNE"
     gene            3425..4714
                     /locus_tag="OQQ76_002075"
     CDS             3425..4714
                     /locus_tag="OQQ76_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate degradation bifunctional
                     isomerase/decarboxylase"
                     /protein_id="HCS1968575.1"
                     /translation="MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNT
                     VIGCGEPIPFPQGEKVLSGATVALIVGKTATKVREEDAAEYIAGYAQANDVSLPEESF
                     YRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSAL
                     SEFATLNPGDAILLGTPQARVEIQPGERVRVLAEGFPPLENPVVDEREVTTRKSFPTQ
                     PHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYE
                     AELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPML
                     STIVPKEAIPDPHNLTLHTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIA
                     TGTPKGLSDVVHGDEVVVEVEGVGRLVNRIVSEDTAK"
     gene            4711..6177
                     /gene="hpaE"
                     /locus_tag="OQQ76_002076"
     CDS             4711..6177
                     /gene="hpaE"
                     /locus_tag="OQQ76_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1968576.1"
                     /translation="MKKVNHWINGKNVAGNDYFQTTNPATGEVLADVASGGEAEINQA
                     VAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIP
                     RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAP
                     CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRHHDVR
                     AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE
                     RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPNDPNTQVGALISQQHWEKVSGYIR
                     LGIEEGATLLAGGPDKPSDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP
                     FKDEAEGLRLANNVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG
                     VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV"
     gene            6179..7030
                     /gene="hpaD"
                     /locus_tag="OQQ76_002077"
     CDS             6179..7030
                     /gene="hpaD"
                     /locus_tag="OQQ76_002077"
                     /EC_number="1.13.11.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase"
                     /protein_id="HCS1968577.1"
                     /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCR
                     EMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLI
                     ADEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
                     GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWRE
                     GQFKEFCNMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVN
                     AVFPLPA"
     gene            7040..7420
                     /locus_tag="OQQ76_002078"
     CDS             7040..7420
                     /locus_tag="OQQ76_002078"
                     /EC_number="5.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HCS1968578.1"
                     /translation="MPHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRV
                     HWVDTWQMADGQRDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLA
                     LSFEIEELHPTLNFKQNNVHALFK"
     gene            7531..8334
                     /gene="hpaH"
                     /locus_tag="OQQ76_002079"
     CDS             7531..8334
                     /gene="hpaH"
                     /locus_tag="OQQ76_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710089.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HCS1968579.1"
                     /translation="MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQR
                     EWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIV
                     PRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFD
                     TISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWL
                     ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRFV"
     gene            8345..9133
                     /gene="hpaI"
                     /locus_tag="OQQ76_002080"
     CDS             8345..9133
                     /gene="hpaI"
                     /locus_tag="OQQ76_002080"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HCS1968580.1"
                     /translation="MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGE
                     HAPNNVQTVLTQLQAIAPYPNQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAR
                     EAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQI
                     LDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGILIANEQL
                     AKRYLELGALFVAVGVDTTLLARAAEALAARFGAQATAVKPGVY"
     gene            9308..10682
                     /gene="hpaX"
                     /locus_tag="OQQ76_002081"
                     /pseudo
     CDS             9308..10682
                     /gene="hpaX"
                     /locus_tag="OQQ76_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460080.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
     gene            10692..11570
                     /gene="hpaA"
                     /locus_tag="OQQ76_002082"
                     /pseudo
     CDS             10692..11570
                     /gene="hpaA"
                     /locus_tag="OQQ76_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224927.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate catabolism regulatory
                     protein HpaA"
     gene            11821..13383
                     /gene="hpaB"
                     /locus_tag="OQQ76_002083"
     CDS             11821..13383
                     /gene="hpaB"
                     /locus_tag="OQQ76_002083"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     oxygenase component"
                     /protein_id="HCS1968581.1"
                     /translation="MKPEDFRASTQRPFTGEEYLKSLQDGREIYIYGERVKDVTTHPA
                     FRNAAASVAQLYDALHKPEMQDSLCWNTDTGSGGYTHKFFRVAKSADDLRQQRDAIAE
                     WSRLSYGWMGRTPDYKAAFGCALGANPGFYGQFEQNARNWYTRIQETGLYFNHAIVNP
                     PIDRHLPTDKVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP
                     DFALMFVAPMDADGVKLISRASYEMVAGATGSPYDYPLSSRFDENDAILVMDNVLIPW
                     ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTLEFRG
                     VQADLGEVVAWRNTFWALSDSMCSEATPWVNGAYLPDHAALQTYRVLAPMAYAKIKNI
                     IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVQHIKILKLMWDAIGSEF
                     GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVPHLHN
                     NDDINMLDKLLK"
     gene            13401..13913
                     /locus_tag="OQQ76_002084"
     CDS             13401..13913
                     /locus_tag="OQQ76_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase reductase
                     subunit"
                     /protein_id="HCS1968582.1"
                     /translation="MQLDEQRLRFRDAMASLSAAVNIITTEGDAGQCGITATAVCSVT
                     DTPPSLMVCINANSAMNPVFQGNGKLCVNVLNHEQELMARHFAGMTGMAMEERFSLSC
                     WQKGPLAQPVLKGSLASLEGEIRDVQAIGTHLVYLVEIKNIILSAEGHGLIYFKRRFH
                     PVMLEMEAAI"
     gene            14306..16456
                     /gene="btsT"
                     /locus_tag="OQQ76_002085"
     CDS             14306..16456
                     /gene="btsT"
                     /locus_tag="OQQ76_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313340.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate/proton symporter BtsT"
                     /protein_id="HCS1968583.1"
                     /translation="MDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASV
                     SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG
                     PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPV
                     PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG
                     RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL
                     ILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFIT
                     IACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLY
                     FAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQILQT
                     AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG
                     TRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW
                     PLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKLFSTNP
                     QMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYG
                     FKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH"
     gene            16587..16790
                     /locus_tag="OQQ76_002086"
     CDS             16587..16790
                     /locus_tag="OQQ76_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1968584.1"
                     /translation="MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSY
                     EEFFRERQNARYGGDGKGGMRCC"
     gene            16801..17757
                     /gene="yjiA"
                     /locus_tag="OQQ76_002087"
     CDS             16801..17757
                     /gene="yjiA"
                     /locus_tag="OQQ76_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313338.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HCS1968585.1"
                     /translation="MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS
                     VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMA
                     DPGPIIQTFFSHEILCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
                     DIAGEAEKLRERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIA
                     DKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV
                     QRLYSADWDRPWGDEKPHSTMVFIGIQLPEDEIRAAFAGLKK"
     gene            complement(17835..>18565)
                     /locus_tag="OQQ76_002088"
     CDS             complement(17835..>18565)
                     /locus_tag="OQQ76_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HCS1968586.1"
                     /translation="RRQLVDTLTRWDGINLLNDDGKTWQQPGSAILNVWLTSMLKRTV
                     VAAVPMPFDKWYSASGYETTQDGPTGSLNISVGAKILYEAVQGDKSPIPQAVDLFAGK
                     PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAE
                     YQNRGTENDMIVFSPTTSDRPVLAWDVVAPGQSGFIAPDGTVDQHYEDQLKMYENFGR
                     KSLWLTKQDVEAHKESQEVLHVQR"
BASE COUNT         4249 a         5143 c         4945 g         4228 t
ORIGIN      
        1 acatcaaaga gcgcggacgc ccgatgggct tcttcaacgc agcttctacc attggcgttg
       61 ccgtaagccc accgattctg gcggcgatga tgctggtgat gggctggcgc gggatgttta
      121 ttaccattgg tgtactgggg atttttctcg ccatcggctg gtatatgctc tatcgcaacc
      181 gcgagcacgt agaactgact gccgttgagc aagcttatct caatgcaggt agcgtcaatg
      241 cccgccgaga tccgctcagt tttgccgaat ggcgcagcct gttccgtaac cgtacaatgt
      301 ggggaatgat gctcggattc agtggcatca actacactgc gtggctgtat ctggcctggc
      361 ttcctggtta cctgcaaaca gcctataacc tggatttaaa aagcacaggg ttgatggcgg
      421 ctatcccttt cctgtttggg gctgccggga tgctggtcaa cggttacgtt accgactggc
      481 tggtcaaagg gggaatggct ccgattaaaa gccgtaagat ctgcattatt gccgggatgt
      541 tctgttctgc cgcctttacg ctgatagtac cacaagcgac aacatccatg acggcggttc
      601 tgctgattgg catggcactg ttctgtattc actttgccgg aacatcctgc tggggcttga
      661 tccacgtcgc agttgcttct cgcatgactg cgtcggtggg cagtatccag aactttgcca
      721 gcttcatctg cgcctctttt gcgccgatca ttactggttt tattgttgat accacccact
      781 cattccgtct ggcactaatc atctgcggtt gcgtcaccgc agcgggggca ctggcgtaca
      841 tcttcctggt tcgtcagccg atcaacgacc cacgtaaaga ttaatctcct tatgcccgat
      901 aacattttgc ttatcgggca ttttcatggc gattaaaatg tttcccagtt ctcctcgcta
      961 tctgccacgg ccattttacg cggcgcagct ggcgtcacgg tttttaccac agccgatgtt
     1021 tcacgctgct gttgctgaat ccggaacact gccactgctt cggtcaggcg actggcctgc
     1081 tcttccagcg cggcggcggc agcggcagac tcttccacca gcgcggcgtt ctgttgagtt
     1141 acccggtcca tctcagcaac cgctaagcca acctgatcga taccacggct ctgctcatca
     1201 gaagcagaag caatttcgcc cataatgtcc gtcacgcggg tcacggcgct gacaatctcc
     1261 gccattgttt ccccggcgct ttcgaccagc gtagagccaa catccacttt ccccaccgag
     1321 tcttcaatca ggcttttaat ttcacgagcc gcctgggcgc tgcgctgggc cagattacgc
     1381 acttctcccg cgaccaccgc aaaaccgcgc ccttgctcac ccgcacgcgc agcctcaacc
     1441 gccgcgttca aagccagaat attggtctgg aaggcaatgc cgtcaattac gctgataata
     1501 tcggcgattt tctgcgaact ggtggagata tcgcgcatag tctgcaccac gttatctacc
     1561 actttgccgc cgcgttgcgc cgtttcagaa gcacttaacg ccagatggct ggcctggcgc
     1621 gcattttcgg cgttctgctt caccgttgcg gtcagttgct ccatgctggc tgccgtctct
     1681 tccagcgaag cggcctgttg ctcggtgcgc gaagagagat cgttattgcc ggtggcgatt
     1741 tcgctggcac cgctatagat ggcattggcc ccgttgcgca catcaccgac ggtacgcatc
     1801 agctctccct gcatatggcg caaactctct gccagttgcc ccatctcatt agagccatcc
     1861 acctcaatcg gtttcaccag atcgccgcct gcaatatgac gaatgctgtc aatcaggcga
     1921 ttcattggcg ctaccagcga ggctttaata ccgaaccaga cggcgaagat gaccgccagt
     1981 acgacgatca tcacgcccac cagaatccac atcgcctggc tgtaggaggc attgttatcg
     2041 ctgacggcga tatcatagag ccgatcgttt tgctccatgt aagccacata ctgcttctcg
     2101 aaaccgtcct gatatccctg ggtcggctga tcaaagaact cgttgatttt gcctgcacct
     2161 aacagttgga tcagctccgc cagcgcattg tgataaatat cgtaattacg tttgatctct
     2221 gccgctgcgg cggtgctctg acgcgggtca cgcggcaacg cttcgtaatc cgcccagttt
     2281 ttttccgcct gtttcagcga aatactggca ctctgcatca gctcagcaac ggttgaaccg
     2341 ctaccaatat tattctgatc catcatgtag cggatacccg cgcggttgag ggtgttacgc
     2401 gtctgcaaca acgcgaccca gctgccattc agcgtggatt gctgctggcg aatggtttgt
     2461 aaaacagtga aattttcttt gtcattcttt aaggcattaa agaacagacc gcctgatgtc
     2521 agttgtaaaa ggccaaaaac ggccaaaacc agcagtaagc tggtcacgat cttgatacgt
     2581 tttaacatgg tttctctttc ctgtggaccg atgcaagatt ttcggcctgg aaagcaaaaa
     2641 ctttatgaaa aggtgtaacc cgccatccat ggaaaaacca ggcgctggtt atcagatact
     2701 aaaaagttat tcattatcgc ccgggatggc ttcttgtcgg gaattgccca gagcaataaa
     2761 ttcctctaac agatgggtta actgttgcat tttctcggca gtaaactgag cttcaatctg
     2821 ccgataggct tcttcaatct gtgtctgagc gcggttatac agcgcctgcc cctctttggt
     2881 tagcgagata tagagcttcc gctgatcatt gatcggcttt aatcgcaaca ctaaaccgtc
     2941 gcgttccatc cgcgtgagaa tcccggtcag gcttgggcgc aaaatgcagg cgcgatacgc
     3001 cagatcgtga aaatccattg atgggctttc cgccagaata cgcacgatgc gccactgttg
     3061 ctcagtcaaa ttatgccgtt taacgattgg gcgaaaataa ctcatcgccg cttctcgcgc
     3121 ctggagcaac gcaatggtta gtgagtcgtg cattatcttt cccctgaaaa attcaaaatc
     3181 attaatatag aaacagttaa tcgtcacgtt accgggactg cgctgcccct gcaattcctg
     3241 attttatcaa aattgatgat attttattaa cttactgata tttaatattt tattatcttt
     3301 aaatgtaaat agtttgttaa ttagatcaca tttacatcac ttacttttgc caaactacgc
     3361 aatcgggaat aaaagtaatc attaacatat taatgattaa gatgatcgaa tccgaggagt
     3421 ggtaatgaaa ggcactatct tcgccgtagc gttgaaccat cgcagccaac ttgatgcatg
     3481 gcaggaagcg ttccagcaat ccccctacaa agccccgcct aaaactgcgg tctggtttat
     3541 taaaccgcgc aatacggtga ttggttgcgg tgaaccgatt ccctttccac agggtgaaaa
     3601 ggtactgagc ggtgcgactg ttgcgctgat tgtgggaaaa acggcgacga aagtacgtga
     3661 agaagatgcg gcagagtaca tcgccggata tgcgcaggct aacgacgtca gcctgccgga
     3721 agagagcttt taccgcccgg caatcaaagc aaaatgtcgt gatggattct gccccattgg
     3781 cgaaaccgtg gctctcagca atgtcgataa tctgaccatc tataccgaga tcaacgggcg
     3841 tcctgccgat cactggaata ccgccgattt acaacgtaac gccgcgcagt tgctgagcgc
     3901 cctgagcgaa tttgccacgc tgaatccagg cgacgccatt ctgctcggca cgccacaggc
     3961 gcgcgtggaa atacagccag gcgagcgcgt tcgtgttctc gcagaaggtt tcccgccgct
     4021 ggaaaatccg gtagtggacg aacgtgaagt gaccacgcgc aagagcttcc caacgcagcc
     4081 acacccgcac ggcacgctgt ttgccctcgg cctgaactac gccgaccacg ccagcgaact
     4141 ggaatttaag ccaccggaag aaccgctggt gttcctgaaa gcgccaaata ccctcactgg
     4201 cgataaccag acctccgtgc gtccaaacaa tattgaatac atgcactatg aagcggagct
     4261 ggtggtagtt attggcaaac aggcgcgtaa cgtcagcgaa gccgatgcca tggattatgt
     4321 cgcgggctac accgtgtgta acgactacgc cattcgtgac tatctggaaa actactaccg
     4381 ccctaacctg cgggtaaaaa gccgcgacgg actgacgccg atgctttcaa ccatcgtgcc
     4441 gaaagaggcg atcccggacc cgcataatct gacccttcac accttcgtca acggcgagtt
     4501 acgccagcaa ggcaccaccg ccgatctgat cttcagcgtg cccttcctga tcgcctactt
     4561 aagtgaattt atgaccctga atccgggcga catgatcgcc accggcacac ccaaaggctt
     4621 atctgacgtg gtgcatggcg atgaagtagt ggtggaagta gaaggcgtgg gccgcctggt
     4681 gaaccgaatt gtgagtgagg atacagcgaa atgaaaaaag taaatcattg gatcaacggc
     4741 aaaaatgttg caggtaacga ctacttccag accaccaatc cggcaacggg tgaagtgctg
     4801 gcggatgtgg cctctggcgg tgaagcggag atcaatcagg cggtagcggc agcgaaagag
     4861 gcgttcccga aatgggccaa tctgccgatg aaagagcgtg cgcgcctgat gcgccgtctg
     4921 ggcgatctga tcgaccagaa cgtgccagag atcgccgcga tggaaaccgc ggacaccggc
     4981 ctgccgatcc atcagaccaa aaatgtgttg atcccacgcg cttcccacaa ctttgaattt
     5041 ttcgcggaag tctgccagca gatgaacggc aagacctatc cggttgacga caagatgctc
     5101 aactacacgc tggtgcagcc ggtgggcgtt tgtgcgctgg tatcgccgtg gaacgtaccg
     5161 tttatgaccg ccacatggaa ggtcgcgccg tgtctggcgc tgggcaatac cgcggtactg
     5221 aaaatgtcgg aactctcccc gctgaccgct gaccgcctgg gtgagctggc gctggaagcc
     5281 ggtattccgg caggcgtgct gaacgtggta cagggctacg gcgcaaccgc aggggatgcg
     5341 ctggttcgtc atcatgacgt acgtgccgtg tcgttcaccg gcggtacggc caccgggcgc
     5401 aacatcatga aaaacgccgg gctgaaaaaa tactccatgg aactgggcgg taaatcgccg
     5461 gtgctgattt ttgaagatgc cgatattgaa cgcgcgctgg acgccgccct gttcaccatc
     5521 ttctcgatca acggcgaacg ctgcaccgcc ggttcacgca tctttattca gcaaagcatc
     5581 tacccggaat tcgttaaacg ctttgccgaa cgcgccaacc gtctgcgcgt gggcgatccg
     5641 aacgatccga atacccaggt tggcgcgctt atcagccagc agcactggga aaaagtctcc
     5701 ggctatatcc gtctcggcat tgaagaaggc gccaccctgc tggcgggcgg cccggataaa
     5761 ccgtctgacc tgcctgcaca cctgaaaggc ggcaacttcc tgcgcccaac ggtgctggca
     5821 gacgttgata accgtatgcg agtcgcccaa gaagagattt tcgggccggt cgcctgcctg
     5881 ctgccgttta aagacgaagc tgaaggctta cgcctggcaa acaacgtgga gtacggcctc
     5941 gcgtcgtaca tctggacaca ggatgtcagc aaagtgttac gcctggcgcg tggcattgaa
     6001 gctggcatgg tgttcgtcaa cacccagaac gtgcgtgacc tgcgccagcc atttggcggc
     6061 gtaaaagcct ccggcaccgg gcgtgaaggc ggtgagtaca gcttcgaagt gttcgcggaa
     6121 atgaagaacg tctgcatttc catgggcgac catccaattc cgaaatgggg agtctgatat
     6181 gggtaagtta gcgttagccg ccaagatcac gcacgtaccg tcgatgtatc tctctgaact
     6241 gccagggaaa aaccacggtt gccgccaggg cgcgatcgac gggcataaag agatcagcaa
     6301 gcgttgccgg gaaatgggcg tcgataccat tatcgttttc gatacccact ggctggtcaa
     6361 cagtgcttat cacatcaact gtgcagacca ttttgaaggc gtctacacca gcaacgagct
     6421 gccgcatttt atccgcgata tgacctacaa ctacgagggc aacccggagt tggggcagct
     6481 tattgccgat gaagccttaa agctcggcgt gcgggcaaaa gcgcacaaca ttcccagcct
     6541 gaaactggaa tacggcacgc tggtgccgat gcgctacatg aatgaagaca agcacttcaa
     6601 agtggtctcc atttcggctt tctgcacggt tcacgatttt gccgacagcc gcaagctggg
     6661 cgaagcgatt ctgaaagcga tcgaacagta cgacggcacc gtggcggtcc ttgccagcgg
     6721 ttcgttatcg caccgcttta ttgacgatca gcgtgcagaa gaagggatga acagctacac
     6781 ccgcgagttc gaccgccaga tggacgagcg cgtggtgaag ttgtggcgcg aaggccagtt
     6841 caaagagttc tgcaatatgc tgccggagta cgccgactac tgctacggcg aaggcaatat
     6901 gcacgacacg gtgatgctgc tggggatgct cggctgggat aaatacgacg gcaaggtgga
     6961 gttcatcacc gagctattcc caagctctgg caccggtcag gttaacgctg ttttcccgct
     7021 tcccgcgtaa ggacgtttta tgccgcactt tatcgttgaa tgcagtgaca acatccgcga
     7081 agaagccgac ctgccggggt tgttcgccaa agtgaatccg acgctggcag ccacgggtat
     7141 ttttccgctg gcgggtattc gcagccgcgt gcattgggtc gatacctggc agatggccga
     7201 cgggcagcgt gattatgcct tcgtgcatat gacgttgaaa atcggcgcag gtcgcagcct
     7261 ggaaagccgt cagcaggcgg gtgaaatgct gtttgaactg attaaaacgc acttcgccgc
     7321 cctgatggag agccgcctgc tggcgttgtc gtttgagatt gaagagctgc atccgacgct
     7381 gaattttaaa caaaacaacg tgcacgcatt gtttaagtag cgcgcagatt gcccggtggc
     7441 gctgcgctta ccgggcctac aaaaccccaa accgtacacc gtaggccgga taaggcgcag
     7501 ccgcatccgg caatgccaca ggatatcgct atgttcgata aacacaccca caccctgatc
     7561 gcccagcgtc tggatcaggc agaaaaacag cgcgaacaga tccgcgcgat ctcgctggat
     7621 tacccagaga tcaccatcga agacgcttac gcggtgcagc gcgaatgggt tcgcctgaaa
     7681 atcgccgaag gccgtacgct gaaaggccac aaaatcggtc tgacctcaaa agcaatgcag
     7741 gccagctcgc agatcagcga accagattac ggtgccctgc tggatgacat gttcttccac
     7801 gatggcagcg atatcccgac cgatcgcttt atcgtgccgc gcattgaagt ggagctggct
     7861 ttcgtgctgg caaaaccgct gcgtgggcca aactgcacgc tgttcgacgt ctacaacgcc
     7921 acggactacg tgatcccggc gctggagctg atcgacgctc gctgccacaa catcgatccg
     7981 gaaacccagc gcccgcgcaa agtgttcgac accatttctg ataacgccgc caacgccggg
     8041 gtgatcctcg gtggtcgtcc gatcaaacca gacgaactgg atctgcgttg gatctccgcc
     8101 ctgatgtatc gcaatggcgt gattgaagaa accggcgtcg ccgctggcgt gctgaatcat
     8161 ccggcaaacg gcgtggcctg gctggcgaac aaactcgcac cgtatgacgt acaactggaa
     8221 gccgggcaaa tcattctcgg tggttcgttc acccgcccgg ttccggcgcg taagggcgac
     8281 accttccacg tcgattacgg caacatgggt tccattagct gccgctttgt ttaaggaaag
     8341 aacgatggaa aacagcttta aagcggcgct gaaagcaggc cgtccgcaga tcggattatg
     8401 gctggggctg agtagcagct acagcgcaga gttactggcc ggagcaggat tcgactggtt
     8461 gttgatcgac ggtgagcacg cgccgaataa cgtgcaaacc gtgctcaccc agctacaggc
     8521 gattgcgccc taccccaacc agccggtagt acgtccgtcg tggaacgatc cggtgcaaat
     8581 caaacaactg ctggacgtcg gcacacaaac cttgctggtg ccgatggtac aaaacgctga
     8641 cgaagcccgt gaagcggtac gcgccacccg ttatcccccc gccggtattc gcggtgtggg
     8701 cagtgcgctg gcccgcgcct cgcgctggaa tcgtattcct gattacctgc aaaaagccaa
     8761 cgatcaaatg tgcgtgctgg tgcagatcga aacgcgtgag gcaatgaaga acttaccgca
     8821 gattctggac gtggaaggcg tcgacggcgt gtttatcggc ccggcggatc tgagcgccga
     8881 tatgggttat gccggtaatc cgcagcaccc ggaagtacag gccgccattg agcaggcgat
     8941 cgtgcagatc cgtgaatcgg gcaaagcgcc ggggatcctg atcgccaatg agcaactggc
     9001 aaaacgctat ctggaactgg gcgcgctgtt tgtcgccgtc ggcgttgaca ccaccctgct
     9061 cgcccgcgcc gctgaagcgc tggcagcacg gtttggtgcg caggccaccg ccgtgaagcc
     9121 cggcgtgtat taatgccgga tgcgctgcac ttatccggcc tacactcgca ccaaaccgta
     9181 ggccggataa ggcgtttacg ccgcatccgg caaaaagccg taccaaatcg cggaccggat
     9241 aaggcgttac gccgcatccg ccataaacct tgtcgtaccc tacaaaaatc ccattagagg
     9301 aagaaaaatg agcgacacct cacctgccat accggagagt atcgatccgg cgaatcagca
     9361 taaagcgctg actgccggac aacaggcggt tattaagaag ctatttcgcc gcctgatcgt
     9421 ctttctgttc gtgctgttta tcttctcgtt ccttgatcgc atcaacatcg gctttgccgg
     9481 actcacgatg ggacgcgacc tcggtctgag cgccaccatg tttggcctcg ctaccaccct
     9541 gttctatgcc gcttatgtca tcttcggcat tcccagcaac attatgctga gtattgtcgg
     9601 tgcgcggcgc tggatcgcca ccatcatggt gctctggggc atcgcctcta ctgccaccat
     9661 gtttgccact ggccccacca gcttgtacgt actgcgtata ctggttggca ttaccgaagc
     9721 cggctttctg cctggtattc tgcgtattta accttctggt ttccggccta tttccgcgcc
     9781 cgtgccaacg ccttgtttat ggtagcaatg ccggtaacga cagcgttggg ctcgatcgtt
     9841 tccggctaca ttttgtcgct ggattgcgtc atggcattaa aaggctggca gtggctgttt
     9901 ttgctggaag gcttcccgtc ggtattactc ggcgtcatgg tgtggttctg gcttgatgac
     9961 tcaccggaca aagctaagtg gctgacgaaa gaagacaaaa aatgcctgca agagatgatg
    10021 gataacgatc gtctgacgct ggttcagcca gagggagcca tcagccacca cgccatgcaa
    10081 caacgcagta tgtggcggga gatcttcact ccggtggtga tgatgtatac cctggcgtat
    10141 ttctgcctga ccaacacact tagtgcgatc agcatctgga caccgcagat cctgcaaagt
    10201 tttaatcagg gcagcagtaa tatcaccatc ggcctgctgg ccgccgtacc gcagatttgt
    10261 accattctcg ggatggtcta ctggagccgt cactcagatc gccgccagga acgaaggcat
    10321 cacaccgccc ttccttattt gttcgctgcc gcaggttggt tactggcttc ggcaactgat
    10381 cacaacatga tccagatgct ggggatcatt atggcttcga ccggatcatt cagcgcaatg
    10441 gcgattttct ggacaacacc ggatcagtcc atcagcctgc gggcacgagc gatcggtatt
    10501 gcggtgatca acgccactgg caacattggt tcagcgttaa gtccgtttat gatcggctgg
    10561 ttgaaagatt tgaccggcag ctttaacagt ggattgtggt ttgttgccgc ctgctggtga
    10621 ttggtgcggg gattatctgg gcgattccaa tgcagtcctc ccgtccgcga gcgaccccgt
    10681 aaggaacgac gatgtgtgac cgtcagattg ccaatattga tatcagcaaa gagtacgatg
    10741 aaagcctggg cacggacgat gtgcattatc agtcgttcgc ccgcatggcg gcattttttg
    10801 gccgccatat gctgccacat cgccacgaac agtactttca gatgcatttc ctcaatagcg
    10861 gacagattga gctacagctt gacgatcatc gctactcggt ggaagcgccc ctgtttgtcc
    10921 tgacgccgcc gtcagtacct catgcgttta ttacggagtc tgacgccgac ggtcatgtgt
    10981 tgacggtacg ggaagatctg atctgacccc tgctggaagt tctttatccg ggcactcggg
    11041 aaaccttcgg cctgccgggg gcctgtcact ggcagataaa cccgacgaac tggcggcgct
    11101 ggaacactat tggcaactga tagagcggga atcggtggaa caactgcctg gacgggaaca
    11161 caccctgacg ttactggcac aggcagtgtt caccctactg ctgcgtaacg caaaactcga
    11221 cgaccatgcc gccagcggga tgcgcggaga attaaaactg ttccagcgtt ttaatatgct
    11281 gattgaaagc cattttcatc agcactggac agtaccggat tacgctaacg aactgcatat
    11341 caccgaatca cgactcacgg acatctgccg tcgctttgcc aaccgtccgc caaaacggtt
    11401 gattttcgac aggcagctgc gagaagccaa gcggctgctg ctgttttctg ataacgccgt
    11461 gaacaatatt gcctggcaat aaggatccgg cttattttgc gcgctttttt aatcgcttag
    11521 tcggttgctc gcccagtgct tatcgcgcca aaaaagtacc tgtgacgtga aaatccctta
    11581 gccttaacgg gaaaccaggc accacctgct attccccttt ctccgcctgg agcaagggga
    11641 tttagtaacg tcaaaaatcg ctaaaagcga cctcgatcac aaaaccgtac ccgacctgaa
    11701 aagtaccagc cattgtccca aaagtctctt cccgtaatcg cccctgcaag cttcaattga
    11761 ataacaaaaa caacacacaa aattaacaat cgtattccga ttaatactgt agaggtcgac
    11821 atgaaaccag aagatttccg cgccagtacc caacgtccgt tcaccgggga agagtatctg
    11881 aaaagcctgc aggatggtcg cgagatctat atctatggcg agcgagtgaa agacgtcact
    11941 actcatccgg catttcgtaa tgcggcagcg tctgttgccc aactgtatga cgcgctacac
    12001 aaaccggaga tgcaggactc tctgtgctgg aacaccgaca ccggcagcgg cggctatacc
    12061 cataaattct tccgcgtggc gaaaagtgcc gacgacctgc gccagcaacg cgatgccatc
    12121 gctgagtggt cacgcctgag ctatggctgg atgggccgta ccccagacta caaagctgct
    12181 ttcggttgcg cactgggcgc gaatccgggc ttttacggtc agttcgagca gaacgcccgt
    12241 aactggtaca cccgtattca ggaaactggc ctctacttta accacgcgat tgttaaccca
    12301 ccgatcgatc gtcatttgcc gaccgataaa gtaaaagacg tttacatcaa gctggaaaaa
    12361 gagactgacg ccgggattat cgtcagcggt gcgaaagtgg ttgccaccaa ctcggcgctg
    12421 actcactaca acatgattgg cttcggctcg gcacaagtga tgggcgaaaa cccggacttc
    12481 gcactgatgt tcgttgcgcc aatggatgcc gatggcgtaa aattaatctc ccgcgcctct
    12541 tatgagatgg tcgcgggtgc taccggctcg ccatacgact acccgctctc cagccgcttc
    12601 gatgagaacg atgcgattct ggtgatggat aacgtgctga tcccatggga aaacgtactg
    12661 atctaccgcg atttcgatcg ctgccgtcgc tggacaatgg aaggcggttt tgcccgtatg
    12721 tatccgctgc aagcctgtgt gcgcctggca gtgaaattag acttcattac agcactgctg
    12781 aaaaaatcac tcgaatgtac cggcaccctg gagttccgtg gtgtacaggc cgatctcggt
    12841 gaagtggtgg cgtggcgcaa caccttctgg gcattgagtg actcgatgtg ttctgaagcg
    12901 acgccgtggg tcaacggggc ttatttaccg gatcatgccg cactgcaaac ctatcgcgta
    12961 ctggcaccaa tggcctacgc gaagatcaaa aacattatcg aacgcaacgt taccagtggc
    13021 ctgatctatc tcccttccag tgcccgtgac ctgaacaatc cgcagatcga ccagtatctg
    13081 gcgaagtatg tgcgcggttc gaatggtatg gatcacgtcc agcacatcaa gatcctcaaa
    13141 ctgatgtggg acgccattgg cagcgagttt ggtggtcgcc acgaactgta tgaaatcaac
    13201 tactccggta gccaggatga gattcgcctg cagtgtctgc gccaggcaca aagctccggc
    13261 aatatggaca agatgatggc gatggttgat cgctgcctgt cggaatacga ccagaacggc
    13321 tggactgtgc cgcacttgca caacaacgac gatatcaaca tgctggataa gctgctgaaa
    13381 taacgcagca ggaggttaag atgcaattag atgaacagcg cctgcgcttt cgtgacgcga
    13441 tggccagcct gtcggcagcg gtaaatatta tcaccaccga gggcgacgcc ggacaatgcg
    13501 ggattacggc aacggccgtc tgctcggtca cggatacacc accatcgctg atggtgtgca
    13561 ttaacgccaa cagtgcgatg aacccggttt ttcagggcaa cggtaagttg tgcgtcaacg
    13621 tcctcaacca tgagcaggaa ctgatggcac gccacttcgc gggcatgaca ggcatggcga
    13681 tggaagagcg ttttagcctc tcatgctggc aaaaaggtcc gctggcgcag ccggtgctga
    13741 aaggttcgct ggccagtctt gaaggtgaga tccgcgatgt gcaggcaatt ggcacacatc
    13801 tggtgtatct ggtggagatt aaaaacatca tcctcagtgc agaaggtcac ggacttatct
    13861 actttaaacg ccgtttccat ccagtgatgc tggaaatgga agctgcgatt taagctccag
    13921 ccccttcacg tattcgtcga aggggcattt ttattgtgat ctcaatcaca tatccacccg
    13981 atgaataatt cttgcccaac cgctcaccgc cattcctgac cgcttacgtc cctaaaataa
    14041 ccactcagtt atttacctta ctttacgcgc gcgtaactct ggcaacatca ctgcaggata
    14101 gcggtcaatt tacctcctca aacgcaacgc aaacctagaa cggcttcggc ctatgattaa
    14161 caaattactc tatgaatttt ggtttgcagg aaggcagcaa gtgagtgaat ccccgggagc
    14221 ttacaacagt aagtgacaga ggtgaacgaa cgcagctgcc gcacctgtaa gccaaaagac
    14281 gacgagtaaa atgccaggtt ttactatgga tacgaaaaaa ctattcaagc acataccctg
    14341 ggtgattctc ggaatcatcg gtgcattctg cctcgcggta gttgcattac gtcgggggga
    14401 gcacgtcagc gccctgtgga tcgtggtcgc ctctgtgtcg gtgtatctgg tggcgtatcg
    14461 ctactacagt ctgtacatcg cccagaaggt gatgaaactc gaccccacgc gcgcgacgcc
    14521 tgcggttatt aacaacgacg gtctgaacta cgttccgacc aaccgttacg tgttgtttgg
    14581 tcaccacttc gccgctatcg ctggtgccgg tccgctggtt ggtccggtgc tcgccgcgca
    14641 gatgggctac ctgcctggca cgctgtggct gctggcgggg gtagtactgg ccggtgcggt
    14701 tcaggacttt atggtgctgt ttatctcctc tcgccgtaac ggcgcatctc tcggtgagat
    14761 gatcaaagaa gagatgggac cagtaccggg gactatcgcg ctgtttggct gtttcttaat
    14821 catgatcatc atcctcgccg ttctggcgct gattgtggtt aaagccctgg ccgaaagtcc
    14881 gtggggtgtc ttcaccgttt gctcaaccgt accgattgcg ctgtttatgg gtatctacat
    14941 gcgctttatc cgtccggggc gtgtaggtga agtttctgtt attggtatcg tgctgctggt
    15001 tgcctctatc tatttcggtg gcgtgattgc tcacgatccg tactggggtc cggcactgac
    15061 ctttaaagac accaccatta ccttcgcgct gattggctat gcgtttgttt ccgcactgct
    15121 gccggtgtgg ctgatcctcg caccgcgcga ctatctggca accttcctga aaatcggcgt
    15181 tatcgtcggc ctggcgctgg gtatcgtggt actgaacccg gaactgaaaa tgcctgcaat
    15241 gacccagtac attgacggta ctggcccgct gtggaaaggc gctctgttcc cgttcctgtt
    15301 catcaccatc gcctgtggtg cggtatctgg cttccacgcg ctgatctctt ccggtacgac
    15361 gccgaaattg ctggctaacg aaaccgacgc gcgtttcatt ggctacggcg caatgctgat
    15421 ggaatccttc gtggcgatta tggcgctggt tgctgcgtcc atcatcgaac cgggtcttta
    15481 cttcgcgatg aataccccgc ctgctggcct tggcatcacc atgcctaacc tgcatgaaat
    15541 gggtggcgag aacgcgccga tcatcatggc gcagctgaaa gacgttaccg cacacgcggc
    15601 ggcgaccgtc agctcctggg gcttcgtgat ttcgccagag cagatcctgc aaaccgcgaa
    15661 agacattggt gagccttctg tcctgaaccg tgcaggtggc gcgccgacgc tggcggtagg
    15721 tatcgctcac gtgttccaca aagtgctgcc gatggctgac atgggcttct ggtatcactt
    15781 cggtattctg ttcgaagccc tgttcatcct gaccgcgctg gatgcgggta ctcgttctgg
    15841 ccgctttatg ctgcaagacc tgctgggtaa cttcatcccg ttcctgaaaa aaaccgactc
    15901 tctggttgcc ggtatcatcg gtactgcggg ctgtgtgggt ctgtggggct acctgctgta
    15961 tcagggcgtg gtcgatccgc tgggcggcgt taagagcctg tggccgctgt tcggtatttc
    16021 caaccagatg ctggcagccg tagcgctggt actgggcacc gttgtgctga ttaagatgaa
    16081 gcgcacccaa tacatctggg taactgttgt tccggctgta tggctgctta tctgcaccac
    16141 ctgggcgctg ggtctgaaac tgttcagcac caacccgcag atggaaggct tcttctacat
    16201 ggcaagccag tacaaagaga agattgctaa cggtactgac ctgacggcgc agcagattgc
    16261 caacatgaac cacatcgttg tgaacaacta caccaacgca ggcctgagta ttctgttcct
    16321 gattgtggtg tacagcatca tcttctacgg tttcaaaacc tggcttgcgg tgcgtaacag
    16381 cgacaaacgt actgacaaag aaactccgta cgttccaatc ccggaaggcg gcgtgaagat
    16441 ctcttcgcac cactaaccgg ttgccggatg cgctgcgcgt atccggccta caaagtgtct
    16501 atcgtaggcc ggataaggcg tttacgccgc atccggcaaa tccctagccc ggaccttccg
    16561 ggctttacgc atatctggaa ggcaaaatgt ttggtaactt aggacaggca aaaaaatatc
    16621 tcggccaggc ggcgaagatg ttgattggca ttccagacta cgacaactac gtcgagcata
    16681 tgaagaccaa ccatcccgac aagccgtaca tgagctatga agaattcttc cgcgaacgcc
    16741 agaacgcgcg ctacggcggc gatggtaaag gcggtatgcg ctgttgttaa tggagagagc
    16801 atgaacccga ttgcagttac cctactcacc ggttttttag gcgcgggcaa aaccaccctg
    16861 ctgcgccata ttcttaacga acaacacggc tacaagattg ccgtgattga aaacgaattc
    16921 ggcgaagtct ccgttgatga tcaactgatt ggcgaccgcg ccacgcagat caaaacgctg
    16981 accaacggct gcatctgctg ttcgcgctcc aacgagctgg aagacgcact actcgacctg
    17041 ctggataatc tcgacaaggg caatattcag ttcgaccgtc tggtcattga atgcaccggc
    17101 atggccgatc ccggcccgat tattcagacc ttcttctccc atgagatttt atgccagcgc
    17161 tacctgctgg acggggtgat tgcgctggtg gatgcggtac atgccgatga gcagatgaac
    17221 cagttcacca tcgcccagtc ccaggttggc tacgccgacc gtattctgct gacgaaaacc
    17281 gacatcgcag gcgaagcaga gaaactgcgt gaacgcctgg cgcgcatcaa cgcccgcgca
    17341 ccggtctaca ccgttaccca cggcgatatc gacctgggcc ttctgttcaa caccaacggt
    17401 tttatgctgg aagaaaacgt cgtcagcacc aaaccgcgtt tccactttat cgcggacaaa
    17461 caaaacgata tttcgtcgat tgtggtggaa ctggattacc cagtagatat cagcgaagtt
    17521 tcccgggtga tggaaaacct gctgctggaa tcggcggata aactgctgcg ttacaaaggg
    17581 atgctgtgga ttgacggcga acctaaccgc ctgctgttcc agggcgtcca gcgcctctac
    17641 agcgccgact gggaccgccc gtggggcgat gaaaaaccgc atagcacgat ggtgtttatc
    17701 gggattcagt tgccggagga tgagattcgg gcggcgtttg cgggactcaa aaagtaacca
    17761 gccctccaac atcacaatac ctgagacttt atcaccctca tattcctcca gaatatgagg
    17821 gcattcgggc ttaattatct ctgaacgtgc aacacttcct gcgactcctt atgcgcctcc
    17881 acatcctgct tcgttaacca gagcgactta cgaccaaaat tttcgtacat tttcagctga
    17941 tcttcatagt gctgatcaac tgttccatcg ggagcaataa acccactctg accgggtgcg
    18001 accacatccc aggcaagcac cggacgatcg cttgtcgttg gtgagaaaac aatcatatcg
    18061 ttttctgttc cacggttttg atactccgcc tgatgacgcg tttcttccgc tgcggcctgc
    18121 ggtacaccaa agaaattatt tgcccggaac gttaaggcca ttgcaggtgt tttccagtta
    18181 ctcacattat tgccatagcg tttggaaaga gtctcccagg tatcttccag cgcagccaac
    18241 acaacctcct gctgtggttt cccagcaaac agatcaaccg cctgtgggat tggtgatttg
    18301 tctccctgca ccgcctcata caaaattttt gctccaacac ttatattcag cgaaccagtt
    18361 gggccgtcct gggttgtttc gtagccactg gcgctgtacc acttatcaaa tggcataggt
    18421 acggcagcca ctacggtacg cttcaacata ctggtcagcc aaacgttcag gatggcagag
    18481 cctggctgct gccaggtttt accatcatca ttaagcaaat tgatgccatc ccaacgtgtt
    18541 aatgtatcca ccaactgacg gcgcg
//
LOCUS       DAJVUN010000071        18158 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.071, whole genome shotgun sequence.
ACCESSION   DAJVUN010000071 DAJVUN010000000
VERSION     DAJVUN010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18158
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.071"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            257..484
                     /gene="feoA"
                     /locus_tag="OQQ76_002089"
     CDS             257..484
                     /gene="feoA"
                     /locus_tag="OQQ76_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter A"
                     /protein_id="HCS1968587.1"
                     /translation="MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAP
                     LGDPIHIETRRVSLVLRKKDLALLEVEAVSC"
     gene            501..2822
                     /gene="feoB"
                     /locus_tag="OQQ76_002090"
     CDS             501..2822
                     /gene="feoB"
                     /locus_tag="OQQ76_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HCS1968588.1"
                     /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKKGQ
                     FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL
                     YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK
                     LAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAY
                     AGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDK
                     IVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDW
                     LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK
                     SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN
                     GALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRL
                     KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED
                     NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAIDETWQSL
                     KDTFSLSVLMNPIEASKGDGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG
                     AIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVVIG
                     LLRRARSRVDIELLATRKSVSSCCAASTTGDCH"
     gene            2822..3058
                     /gene="feoC"
                     /locus_tag="OQQ76_002091"
     CDS             2822..3058
                     /gene="feoC"
                     /locus_tag="OQQ76_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[Fe-S]-dependent transcriptional repressor FeoC"
                     /protein_id="HCS1968589.1"
                     /translation="MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG
                     KAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR"
     gene            3261..4139
                     /gene="rpnA"
                     /locus_tag="OQQ76_002092"
     CDS             3261..4139
                     /gene="rpnA"
                     /locus_tag="OQQ76_002092"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnA"
                     /protein_id="HCS1968590.1"
                     /translation="MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKT
                     LKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAA
                     MQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT
                     VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQ
                     TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLTDI
                     MRFTGVSEEELAAASQ"
     gene            complement(4168..4938)
                     /gene="bioH"
                     /locus_tag="OQQ76_002093"
     CDS             complement(4168..4938)
                     /gene="bioH"
                     /locus_tag="OQQ76_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709189.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HCS1968591.1"
                     /translation="MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHL
                     VDLPGFGRSQGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL
                     VTVASSPCFSARDDWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARA
                     LKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVPMPFLRLYGYLDGLVPRKVVPML
                     DKLWPRSKSYIFAKAAHAPFISHPVEFCHLLVALKQRV"
     gene            4976..5659
                     /gene="gntX"
                     /locus_tag="OQQ76_002094"
     CDS             4976..5659
                     /gene="gntX"
                     /locus_tag="OQQ76_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417872.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein GntX"
                     /protein_id="HCS1968592.1"
                     /translation="MLTVPGLCWLCRMPLALGHWGICSVCSRAARTDKTLCPQCGLPA
                     THSHLPCGRCLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVL
                     HARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHCRWDSEAVTRTRAT
                     ATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAATV
                     QVWCLCRTL"
     gene            5718..6293
                     /gene="nfuA"
                     /locus_tag="OQQ76_002095"
     CDS             5718..6293
                     /gene="nfuA"
                     /locus_tag="OQQ76_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016942932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HCS1968593.1"
                     /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC
                     PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA
                     DDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK
                     EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY"
     gene            6654..7970
                     /gene="gntT"
                     /locus_tag="OQQ76_002096"
     CDS             6654..7970
                     /gene="gntT"
                     /locus_tag="OQQ76_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCS1968594.1"
                     /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD
                     KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV
                     LTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGP
                     TAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEE
                     MPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT
                     FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNI
                     SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH
                     VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI"
     gene            complement(8015..10099)
                     /gene="malQ"
                     /locus_tag="OQQ76_002097"
     CDS             complement(8015..10099)
                     /gene="malQ"
                     /locus_tag="OQQ76_002097"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HCS1968595.1"
                     /translation="MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQR
                     TATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPT
                     KLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWG
                     IGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNA
                     VEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDE
                     QMTAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFC
                     EEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDREL
                     YCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHV
                     MSMLRLWWIPYGETADQGAYVHYPVDNLLSILALESKRHRCMVIGEDLGTVPVEIVGK
                     LRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWESGDLTLGKT
                     LGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRY
                     IADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLETMFADDGVNKLLKD
                     LDRRRRAAAKKQ"
     gene            complement(10109..12502)
                     /gene="malP"
                     /locus_tag="OQQ76_002098"
     CDS             complement(10109..12502)
                     /gene="malP"
                     /locus_tag="OQQ76_002098"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HCS1968596.1"
                     /translation="MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALA
                     EMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDL
                     LEEEIDPALGNGGLGRLAACFLDSMATIGQSATGYGLNYQYGLFRQSFVDGKQVEAPD
                     DWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPL
                     RLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQ
                     CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAW
                     AITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK
                     VWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN
                     GITPRRWIKQCNPALAALLDKLLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANK
                     VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP
                     RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIP
                     AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE
                     QVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYL
                     VMADFAAYVEAQKQVDVLYRDQEAWTRVAILNTARCGMFSSDRSIRDYQARIWQAKR"
     gene            13114..15819
                     /gene="malT"
                     /locus_tag="OQQ76_002099"
                     /pseudo
     CDS             13114..15819
                     /gene="malT"
                     /locus_tag="OQQ76_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312287.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
     gene            complement(15862..16878)
                     /gene="rtcA"
                     /locus_tag="OQQ76_002100"
     CDS             complement(15862..16878)
                     /gene="rtcA"
                     /locus_tag="OQQ76_002100"
                     /EC_number="6.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HCS1968597.1"
                     /translation="MKRMIALDGAQGEGGGQILRAALSLSMITGQPFTITSIRAGRAK
                     PGLLRQHLTAVKAAAEICRATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVL
                     QTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFY
                     PAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSL
                     HEQNIHNLPRDQGPGNTVSLEVESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLAS
                     PAAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIETDGVTR
                     VSIE"
     gene            complement(16882..18108)
                     /gene="rtcB"
                     /locus_tag="OQQ76_002101"
     CDS             complement(16882..18108)
                     /gene="rtcB"
                     /locus_tag="OQQ76_002101"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-splicing ligase RtcB"
                     /protein_id="HCS1968598.1"
                     /translation="MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIA
                     VMPDVHLGKDSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQA
                     IETAVPHGRTTGRCKRDKGAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHL
                     GTLGTGNHFIKICLDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRD
                     LAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEE
                     INCHHNYVQKEQHFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCS
                     CSHGAGRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMTAQSD
                     LVEVIYTLRQVVCVKG"
BASE COUNT         4177 a         4996 c         4559 g         4426 t
ORIGIN      
        1 agccagtccg ggtaattcac tattcgaatt atattttcgc tgcgatataa ccttgagcca
       61 catcaacatt gatgtcagat tattattcaa accaacattc gcacacattt taagtattgc
      121 tgatagaaaa cattctcatt atcattgtgt tgttgattat ttaatctctc ctttgttggc
      181 aaatcatctg gtctcatgtc gctgtcaaac gccccatgag gtagttatcc agttaatgag
      241 aaacaagtag gaacctatgc aatacactcc agatactgcg tggaaaatca ctggcttttc
      301 ccgtgaaatc agcccggcat atcgccaaaa actgctttct cttggcatgt tacctggctc
      361 ctcttttaat gtggtgcgcg tcgctccact cggcgacccc attcatatcg aaacccgtcg
      421 tgtgagcctg gtattacgca aaaaagatct ggccttatta gaagtggaag cggtttcctg
      481 ttaatacggt gataacaaca atgaaaaaat taaccatagg cttaattggt aatccaaatt
      541 ctggcaagac aaccttattt aaccagctca ctggcgcacg tcagcgtgta ggtaactggg
      601 ctggcgttac cgtcgaacgt aaaaaagggc aattctccac caccgatcat caggtcacgc
      661 tggtggacct acccggcacc tattctctga ccaccatctc atcgcagacc tcgctcgatg
      721 agcaaatcgc ctgtcactac attttgagtg gcgacgccga cctgctgatt aacgtggtgg
      781 atgcgtctaa ccttgagcgt aacctgtacc tgacgctaca actgctggaa ctcggcattc
      841 cctgcattgt ggcactgaac atgctcgaca ttgccgagaa gcaaaatatt cgtattgaaa
      901 ttgatgctct gtcggcgcgt ctgggctgtc cggtgatccc gctggtttca acccgtggtc
      961 gcggtattga agcgctcaag ctggcgattg atcgctataa agctaacgag aatgtggaac
     1021 tggtgcatta cgcacagccg ctactcaacg aagcagattc actggcaaaa gtgatgcctt
     1081 ccgacatccc gctgaagcaa cgtcgctggc tgggcctgca aatgctggaa ggcgatatct
     1141 acagccgcgc ctacgccggt gaagcgtcgc agcatctgga tgccgccctc gcccgtctgc
     1201 gtaatgagat ggacgatccg gcgctgcaca ttgccgatgc gcgttaccag tgcattgctg
     1261 ccatctgtga tgtggtaagc aacaccctga cggcagaacc cagccgtttc accactgcgg
     1321 tagataaaat cgtgctcaac cgtttcctcg gtctgccgat tttcctcttt gtgatgtacc
     1381 tgatgttcct gctggctatc aacatcggcg gggcgttaca gccgctgttt gacgtcggct
     1441 ccgtggcgct atttgtgcat ggtattcaat ggattggcta cacgctccac ttcccggact
     1501 ggctgactat cttcctcgcc cagggcctgg gtggcggcat taacaccgtg ctgccactgg
     1561 tgccgcagat tggcatgatg tacctgttcc tctccttcct tgaggactcc gggtatatgg
     1621 cgcgtgcggc gtttgtgatg gaccgtctga tgcaggcgct gggcttgccg gggaaatcct
     1681 ttgtgccgct gatcgtcggt ttcggttgta acgtaccgtc ggtaatgggt gcacgtacgc
     1741 ttgatgcacc gcgtgaacgt ctgatgacca tcatgatggc accgtttatg tcctgcggcg
     1801 cgcgtctggc tatcttcgca gtattcgcgg ctgccttctt cgggcagaac ggtgcgctgg
     1861 cggtcttctc gctgtatatg ctgggtattg tgatggcggt gctgactggc ctgatgctca
     1921 agtacaccat catgcgcggt gaagcgacgc cgtttgtcat ggagttgccg gtctatcatg
     1981 taccacacgt taaaagcctg attatccaga cctggcagcg tctgaaaggc ttcgttctgc
     2041 gtgctggtaa agtgatcatc atcgtcagca ttttcctgag cgctttcaac agcttctcgc
     2101 tgagcgggaa aatcgtcgat aacatcaacg actcggcgct ggcgtccgtc agccgggtga
     2161 tcaccccggt cttcaagcca attggcgtgc atgaagataa ctggcaggca acggttggcc
     2221 tgtttacagg tgccatggcg aaagaagtgg tagtgggtac gctcaacacc ctctacaccg
     2281 cagaaaatat tcaggacgaa gagttcaatc cggcagagtt taacctcggt gaagagctgt
     2341 tcagtgcgat agatgaaacc tggcagagcc tgaaagacac cttcagcctt agcgtactga
     2401 tgaaccccat tgaagccagc aaaggcgacg gcgaaatggg taccggggcg atgggcgtga
     2461 tggatcagaa attcggtagc gcagcagcag cttacagcta cctgattttc gtcctgctgt
     2521 atgtaccatg tatctcggtg atgggagcca tcgcccgtga atcaagccgt ggctggatgg
     2581 gcttctccat cctgtggggg ctgaatatcg cttactcgct ggcaacattg ttctatcagg
     2641 tcgccagcta cagtcagcac ccaacttaca gcctggtgtg cattctggcg gttatcctgt
     2701 ttaacatcgt ggttatcggt ctgctgcgcc gcgcgcgtag ccgggtggat atcgaactgc
     2761 tggcaacccg caagtcggta agcagttgct gcgcagccag caccaccggt gattgccatt
     2821 aatggcttca cttattcagg tgcgcgattt gctggcgtta cggggccgta tggaagcggc
     2881 ccagataagc cagacattga acactccaca gccaatgatt aacgccatgc tgcaacaact
     2941 ggaaagtatg ggcaaagccg tgcggattca ggaagaacct gacggctgcc tctctggcag
     3001 ttgtaaaagc tgcccggaag gaaaagcctg tctgcgcgag tggtgggcgc ttcgttaacc
     3061 ttactccatc gcctgttttg gaaagcccgg tatgcgtctg catccgggct tttttgcgtg
     3121 cggctttcca taaaaatgca actcttgcag cacggcgtaa gttcctttga aagcatctcg
     3181 cagggatgaa aactcgctaa tacacaggtg tggagtggcg cgtagagtcg cggcattcaa
     3241 acaacaggtg aaggaacgcc atgagcaaaa agcagagttc caccccacac gatgcgctgt
     3301 tcaaactctt tttacgccaa ccggacacgg ctcgtgattt tcttgcgttt catttacctg
     3361 cacccattca cgcgctttgt gatatgaaaa ccctcaagct ggagtcgagc agctttattg
     3421 atgacgatct gcgtgaaagc tattccgatg tgctgtggtc ggtgaaaacg gaacaaggac
     3481 caggatacat ctattgtctg attgaacatc aaagcacctc aaacaaactg atcgcatttc
     3541 gcatgatgcg ttacgctatt gccgcaatgc aaaatcacct tgatgctgga tacaaaacgt
     3601 tgccgatggt ggtgccattg ttgttttacc acggtattga aagcccctat ccctattcgc
     3661 tgtgttggct ggattgtttc gccgatccca aactggcaag gcagctttat gcctccgcat
     3721 ttccgctgat tgatgtcacc gtcatgcctg atgatgaaat catgcagcac cgacgtatgg
     3781 cgctgctgga gttaattcaa aaacatattc gtcaacgcga cctgatgggg ctagtagagc
     3841 aaatggcctg cttattaagt agtggatacg ctaatgacag acaaatcaaa gggctgttta
     3901 attacatact gcaaaccggc gacgcggtac gttttaacga ttttatcgac ggcgttgccg
     3961 aacgttcacc gaaacacaag gagagtttaa tgacaattgc ggaaagattg cggcaggagg
     4021 gggaacaatc caaagccctg catatagcca aaataatgct tgaatccgga gtccctctta
     4081 cagacatcat gcgctttacc ggggtgtcag aagaagagtt ggctgcggcg agccagtaaa
     4141 tttctgtctc gccatttcaa aagttgccta caccctctgc ttcaacgcca ccagcaggtg
     4201 acaaaactcg accggatgcg aaataaacgg cgcatgggcc gctttggcga agatatatga
     4261 tttgctgcga ggccagagtt tatccagcat cggcaccact ttgcgcggca ccagaccatc
     4321 gagatagcca tacaatcgca aaaacggcat gggcacgttt tgcagcggct gacggagatc
     4381 aaccgttttc aggatttcca gcccgccatt aagcacgtca acctccggca tcggtaacgc
     4441 cagaacggtt ttcttcaacg cccgcgcatc ctggcgcgcc gtttcagtcc ccatggtttg
     4501 taacgccagg aaccgctcca ctgtacgctg aaaatcatca ctgagttgct gctgaaatcc
     4561 cgccagcacg tccggtttta tccccggcca atcgtcacga gcactaaaac aaggtgacga
     4621 cgccacggtg accagcgcct gaacacgctc gggatgggtt aacgcaatct ggcttgccac
     4681 cagcccgccc agactccagc ctaaccaaat ggctttatca ggtgcctgtt gcagcacggc
     4741 ttcggccata tcagcaagtg acagcgcacc aaatccctgg ctgcgcccga agccgggcag
     4801 atcaacaagg tgcagcgtaa aatgcgagct aagttcctcg tcaatgcaac gccacacttc
     4861 ggcattcagt ccccatccgt gcagcagcac aagatgaaca ttcccctgac ctttggtctg
     4921 ccaccagatg ttattcatcc gctattgttc tcttttgact tacaaggatg aacatatgct
     4981 aacagtaccg ggattatgct ggctatgccg aatgccgctg gcgttaggtc attgggggat
     5041 ttgttcggtc tgctcacgcg ccgcccgtac agataaaacg ttatgcccac aatgtggatt
     5101 acccgccaca cactcacatc ttccctgcgg tcgctgcctg caaaaaccac cgccctggca
     5161 aagactggtc acggttgccg actatgcgcc gccgttaagt ccgcttatcc accagcttaa
     5221 attttcccgg cgcagtgaaa tcgccagcgc cctgtcacgt ctgttactat tggaagtctt
     5281 acacgctcgt cgcaccaccg ggttgcaatt gccggatcgc atcatcagcg ttccgttatg
     5341 gcagcggcgt cactggcgtc ggggatttaa tcagagcgat ttgctgtgtc agccgttatc
     5401 acgctggttg cactgccgat gggatagcga agccgtcaca cgaacacggg ccactgcgac
     5461 ccagcatttt ctcagtgccc ggctacgcaa gcgcaacctg aaaaatgcct ttcgtcttga
     5521 attgcccgtg caaggtcgcc atatggtgat tgtggatgat gtcgttacca ccggaagtac
     5581 cgtcgcagag attgcgcagt tgcttttacg caatggtgcg gcgactgtcc aggtctggtg
     5641 cctttgtcga accttgtaga gcctcgatga tgggcgtatt ataaccaact aaaatagtca
     5701 actattaggc cattactatg atccgtattt ccgatgctgc acaagcgcac tttgccaaac
     5761 tgctggcaaa ccaggaagaa gggacacaaa tccgcgtatt tgtgattaac cctggcacgc
     5821 ctaacgctga atgtggtgtt tcttattgtc cgccggatgc cgtggaagcc accgacactg
     5881 ccctgaaatt tgacctgctg accgcgtatg ttgatgagtt aagcgctcct tacctggaag
     5941 atgcagagat cgattttgtt accgaccagt tgggttctca gctaacactg aaagcgccta
     6001 acgccaaaat gcgtaaagtg gcagacgatg caccactgat ggagcgcgtg gagtatatgc
     6061 tgcagtcgca gatcaaccca cagcttgctg gtcacggtgg ccgcgtttca ctgatggaaa
     6121 tcaccgaaga cggttacgcc attctgcaat ttggcggcgg ctgtaacggt tgttccatgg
     6181 tcgatgtgac gctgaaagaa gggatcgaga aacagctgct aaacgaattc ccggagctga
     6241 aaggtgtgcg cgatctcacc gaacaccagc gcggcgaaca ctcctactac taagttatcc
     6301 cctcttttgt agattgcccg atgcgacgct aaagcgtcat ttcgggccta cgttgaacat
     6361 gtgccagacg ttggcgcagc attgctttgg caaatccctc ccttcgtttc tccgcgataa
     6421 tatgaccaac ctctcataat ttaaatttac tccgctctgg tgattctcaa acgccagatg
     6481 ttacccgtat cattcacatg ggtaccaaac atactcctga catctgacta caataattag
     6541 ttttagtggg tatcagtcgt ggtgccgcaa tatctctgtt cccgattggg ataattagag
     6601 tttgtcgtca gaaaattgac gttacccata acaaatgaag ggccaggtaa atcatgccat
     6661 tagtcattgt tgctatcggt gtaatcttgt tgttgctcct gatgatccgt ttcaaaatga
     6721 acggcttcat cgctctcgtc ctcgtggcgc ttgctgttgg attaatgcaa gggatgccgc
     6781 tggataaagt tattggctcc atcaaagccg gtgtcggcgg gacgctcggt agccttgccc
     6841 tgatcatggg ttttggcgcg atgctgggca aaatgctggc agactgcggt ggcgcacaac
     6901 gtatcgccac caccctgatt gccaaatttg gtaaaaaaca catccagtgg gcggtggtac
     6961 tgaccggttt taccgttggt tttgccctgt tctatgaagt gggctttgtg ctgatgctgc
     7021 cgctggtgtt taccatcgcg gcttctgcga atattccact gctgtatgtt ggtgtaccaa
     7081 tggcagctgc actgtctgtg acccacggct tcctgccacc gcatccgggt ccgactgcga
     7141 ttgccaccat tttcaatgcc gacatgggta aaaccctgct gtacggtact attctggcaa
     7201 tcccgaccgt gattctcgcc ggtccggttt acgctcgcgt gttgaaaggt atcgataagc
     7261 cgatccctga aggtctgtac agcgcgaaaa ccttcagcga agaagagatg ccgagctttg
     7321 gcgtcagcgt ctggacctct ctggtgccgg tagtgctgat ggcgatgcgt gcgattgccg
     7381 aaatgatcct gccgaaaggt cacgctttcc tgccggtagc ggagttcctc ggtgacccgg
     7441 taatggctac gctgattgcc gtgctgattg cgatgttcac ctttggtctg aaccgtggtc
     7501 gttcaatgga tcagattaac gacacgctgg tttcttccat caaaatcatt gcgatgatgc
     7561 tgttgatcat cggtggtggc ggtgcgttca agcaggtgct ggtagacagc ggcgtggaca
     7621 aatacattgc ttccatgatg cacgaaacca acatttctcc gctgctgatg gcctggtcga
     7681 ttgctgccgt actgcgtatc gcgctgggtt ccgcaaccgt tgcggcaatc actgcgggtg
     7741 gtatcgcggc accgctgatt gcaacgacgg gtgttagccc ggagctgatg gttattgcgg
     7801 tgggttccgg tagtgtgatt ttctctcatg tgaacgatcc gggcttctgg ctgttcaaag
     7861 agtactttaa cctgactatc ggcgagacca tcaaatcctg gtcgatgctg gaaaccatta
     7921 tctcggtgtg cggtctggta ggctgtctgc tgctgaatat ggtgatttga taacactgac
     7981 tgccggatgc atcgcatccg gcatcaaccg cactctactg cttcttcgct gcagctctgc
     8041 gccgtctgtc caaatccttc agcaacttat tcacgccatc atcggcaaac atcgtctcaa
     8101 gcgttgcgga aagcttgcgt cgccagtttt tatactggta actggtgcca ggaatattca
     8161 ccggttcggc catatccagc cagtcttccg gctgtagtcc taacagagca ctgttactgt
     8221 cggcaatgta gcgctgcaaa ccacgattaa gcgtcggcgt catcgacatc aacgatgcct
     8281 tatgcccggc acgttttggc agacaaccat atttatgcag tgcatccagc agcccttgct
     8341 tcgccagttc gcgatcctga tacagaccgc gcagtaccac ttcatccgga tacagcccca
     8401 gggttttgcc caacgttaga tccccgctct cccagtaacc gcgcagcgta ggcaggtcat
     8461 gtgtcgccgc aaccgccatc gactgctccg gatacgcttt cggtgcacgg aacgtcttct
     8521 cgtggtcgtt ttcgaaatag agcactttgt aggagtacac accgctgctg cgcagcttac
     8581 cgacaatctc caccggtacg gtaccgagat cttcaccaat caccatacag cgatgacgtt
     8641 tactttcgag tgccagaatc gagagcagat tatccaccgg atagtgaaca tacgcgccct
     8701 gatctgccgt ctcgccatac ggtatccacc acaaacgcag catcgacatc acatggtcaa
     8761 ttcgtaatgc gccgcagttt tgcatattgg cacgcaacag ctcgataaac ggttcatagg
     8821 cacgcgcggt gatgatatgc gggtccattg gcggtaatcc ccagttctgc cccaacgggc
     8881 cgaggatatc cggcggcgcg ccaaccgacg ctttcaggca atatagttca cggtcacacc
     8941 aggtttccgc cccaccttcc gctacgccaa ccgccagatc acgatacaag ccaatcggca
     9001 tttcatagcc ctggcttatc tcccagcagg cggcaaactg gctgtaagcc agccactgca
     9061 accagagata aaaatcgacg tcatcacgat gttcttcgca gaactgacgc acttctggtg
     9121 aatccacgtt ctgatacatc tctggccatg caggccagcc ccagcgcatt tcgtcctctt
     9181 tcacttgctg ggcatgtagc gcatcaaagg ctgcctgcca gaacaggctg tcgccctgct
     9241 ctgcaacaaa ctggcgaaac gcggtcatct gctcatcatc acgttgcgcg aaacctttcc
     9301 acgccattcg taatgctgtc atttttaggg cggtaaccgt ggagtaatcg acccagtcgg
     9361 catcgcgcgc ctgttgcagc gtctgttgcg tggtcggcaa ctgccaccag gcctgagcct
     9421 cttcgctaag atggaaatct tcaacggcgt taacgtcgat ataaatcaca ttcagccaac
     9481 ggcgagaaga cgggctgtat gggctggcac tctccggatt tgccggatag agcgcatgaa
     9541 tcgggttcag gccgatgaac gacccgccac gttttgccac atccaccagc atcgctttga
     9601 gatcgccaaa atccccaata ccccagtttt tttccgatcg cagcgtataa agctgaacgc
     9661 aggcacccca cagcttttgt ttattcagca acgcctgcgg ttcgtaacag cgtttcgggg
     9721 cgacaatcac ccggcaatgc gcgcgctggt cgtcctgggt gagtgtcagt gtgtgataac
     9781 cttccggcag cttcgtcggt agattgaacg ctttgccccc cgttacatgg cctttgtact
     9841 gtgttccttc ttcggtggtc agcagccagc tatattcgcc gctgccctcc accaccatcg
     9901 gcattttttt gccgctggta taaaccatga cattcgggac tggcgttacc gccactttcg
     9961 tggcggtacg ttgatgcatc gcgtcaagca aacgccgttt ggtttcggcg ctaatcgact
    10021 gcggtttacc gtgggcattg atgtaattgg ggctaatccc cgccgccagc gcggcattat
    10081 ccagacgttt gctttccatc gagcttcctt agcgttttgc ctgccagata cgagcctgat
    10141 aatcgcgaat agagcgatcc gagctaaaca taccgcagcg ggcggtattg aggatcgcca
    10201 cgcgagtcca ggcctcctgg tcgcggtaca gcacatccac ctgcttttgt gcctcaacat
    10261 aggctgcgaa atccgccatc accagatacg gatcgccgcc ttgtttgccg atactgtgca
    10321 gcatctggtc gaaggcatgc ttatcgccgt cgctgtattt accgctttcc agctctttca
    10381 atactgcgtc cagcacctta tctttcttcc gccatttcac cgggtcgtag cctttggcca
    10441 gaattgcctt cacttgttcc acggtatgac caaaaataaa gatattttct tcaccgactt
    10501 tctcggcgat ttcaacgttc gcaccatcca gcgtaccgac agtaagcgca ccattgagcg
    10561 ccagtttcat attgccggta ccggaagctt ctttacctgc agtcgaaatt tgttcggaga
    10621 tatccgccgc cgggatcagt ttttccgccg ccgaaacaca ataatccggc aggaacacca
    10681 ccttcaactt atcgccaacc agtggatcgt tgttgatcac gtcagccact ttgttgatcg
    10741 caaagataat attcttcgcc aggtagtagc ccggtgccgc tttcgcgccg aagaggaaga
    10801 cgcgcggtac gcgatcagcc tgcgggtttt cacgaatttc tttgtacaac gccagaatat
    10861 gcagcagatt caggtgctgg cgtttgtact catgcagacg tttaatctga atatcgaaaa
    10921 tcgcctgtgg attgatctca ataccggtac gaactttcac aaactccgcc agacggactt
    10981 tattcgcctg cttgatctcg cgatattgct gacggaattt cgcatcatca gcgaattttt
    11041 ccagattgat cagctgatcg agatcgttag cccactcttt ttgcagtaat ttatccaaca
    11101 gagccgccag tgcagggttg cactgtttga tccagcgacg tggggtaata ccgttggtga
    11161 cgttatggaa tttgttcggc catagctggt gatattccgg gaacagatct ttcaccacca
    11221 gatccgagtg cagcgccgca acaccgttca ccgcgaaacc gccaaccaca cacaggttcg
    11281 ccatatgcac ttgtttatcg tgcaccaccg ccagtttggc ccacactttt tcatcgcccg
    11341 gccaggtttt ctccaccagc gttttaaagc gagtattaat ttcgttaata atctgcatat
    11401 ggcgcggcag taagcctttc accagtttca catcccagcg ttccagcgct tctggcatca
    11461 gggtatggtt ggtgtaagcg aaagttttgc tggtaatggc ccaggcgtca tcccagctca
    11521 tctggtgctc atcgatcagc acgcgcagca gttctggaat cgcgatagtt gggtgggtat
    11581 cgttcagctg aataacttca taatccgcca gttcgtgcag tttacgcccc gccagatgat
    11641 ggcgacgcaa aatatccgct accgaacagg cacactggaa gtactgctgc atcaagcgca
    11701 gctttttacc ggcagtatgg ttgtcgtttg gatagagaac tttggtcagt ttttccgcat
    11761 tgatgccctg ctgttcggca cgcaggaaat caccgtcgtt aaatttagtc agatcaaacg
    11821 gatgcgcgtg cgtcgcctgc cacagacgca gcggctgcgc cacgccatta cgatagccga
    11881 caacggggag atcccacgct tgaccggtaa tggtaaactc cggctcccag cgtccgtctt
    11941 tcgtcacttt accgccaatc cctacctgca catccagtgc ttcgttgtgg cggaaccacg
    12001 ggtagttact gcgatgccag tcatccggcg cttcaacctg tttgccatcg acaaaagact
    12061 ggcggaacaa accatattga tagttcagac cgtaacccgt cgcagactga ccgatagttg
    12121 ccattgagtc gaggaagcac gccgccagac gtcccagacc accgttaccc agcgccgggt
    12181 cgatctcttc ttccagcagg tccgtcagat tgatgtcata agccttcaac gaatcctgta
    12241 catcctgata ccagccgaga ttcaacaggt tgttgcccgt caggcgacca atcaaaaact
    12301 ccattgagat gtagttaaca tgtcgctgat tcgccaccgg cttggcgaat ggctgagcac
    12361 gcagcatttc ggccagtgct tcactcactg ctagccacca ctggcgagga gtcatttcag
    12421 ccgcagaatt taagccataa cgctgccact gacgtgaaag cgcttcctga aattgcttat
    12481 cgttaaaaat aggttgtgac ataggagttc cacttttctt agattttcaa cacaacgtta
    12541 tcgctagttt gccaggctcg atgttgacct tcctcatcct gcgggggatt aggcagggag
    12601 gagttgcggg gatgagcaag gaaatgtgat ctcaaccact taaagctagt gcaaaccaca
    12661 ggattagcag caaatcaatg caatacagcg cagaaaatct gtatctaagt gcaaaaaatg
    12721 gccgttgcgt attttcaaaa agcggaaggt aactctataa attaagtaaa ggagtgaaac
    12781 agtttcacaa gtaaaatatc cagtgtgctc catctcattc ttaatagatt tattaagatc
    12841 atctttttag atggcacttt catcaggaat gaagaagaaa cccttgctta aatgaatctg
    12901 atgaacataa gggaaaccag tattcacgct ggatcagcgt cgttttaggt gagttgttaa
    12961 taaagatttg gaattgtgac acagtgcaaa ttcagacaca taaaaaaacg tcatcgcttg
    13021 cattagaaag gtttctggcc gaccttataa ccattaatta cgaagcgcaa aaaaaataat
    13081 atttcctcat tttccacagt gaagtgatta actatgctga ttccgtcaaa actaagtcgt
    13141 ccggttcgac tcgaccatac cgtggttcgt gagcgcctgc tggctaaact ttccggcgcg
    13201 aacaacttcc ggctggcgct gatcacgagt cctgcgggct acggaaagac caccctcatt
    13261 tcccagtggg cggcaggcaa aaacgatatc ggctggtact cgctggatga aggtgataac
    13321 cagcaagagc gtttcgccag ctatctcatt gccaccgtgc agcaggcaac caacggtcac
    13381 tgtgcgatat gtgagacgat ggcgcaaaaa cggcaatatg ccagcctgac gtcactcttc
    13441 gcccagcttt tcattgagct ggcggaatgg catagcccac tttatctggt catcgatgac
    13501 tatcatctga tcactaatcc agtgatccac gagtcaatgc gcttctttat tcgccatcaa
    13561 ccagaaaatc tcaccctggt ggtgttgtca cgcaaccttc cgcaactggg cattgccaat
    13621 ctgcgtgttc gtgaccaact gctggaaatt ggcagtcagc aactggcatt tacccatcag
    13681 gaagcgaagc agttttttga ttgccgtctg tcatcgccga ttgaagccgc agaaagcagt
    13741 cggatttgcg atgacgtttc cggttgggcg acggcactac agctaatcgc cctctccgcc
    13801 cggcagaata cccactcagc ccataagtcg gcacgccgcc tggcgggaat caatgccagc
    13861 catctttcgg attatctggt cgatgaggtt ttggataacg tcgatctcgc aacgcgccat
    13921 tttctgttga aaagcgccat tttgcgctca atgaacgatg cgctcatcac ccgtgtgacc
    13981 ggcgaagaaa acgggcaaat gcgtctcgaa gagattgagc gtcaggggct gtttttacag
    14041 cggatggatg ataccggcga gtggttctgc tatcacccgc tgtttggcaa cttcctgcgc
    14101 cagcgctgcc agtgggaact ggcggcggag ctgccggaaa tccaccgtgc cgccgcagaa
    14161 agctggatgg cccagggatt tcccagcgaa gcgattcatc atgcgctggc agcaggcgat
    14221 gcgctgatgc tgcgcgatat tctgcttaat cacgcctgga gtttgttcaa ccatagcgaa
    14281 ctgtcgctgc tggaagagtc gcttaaggcc ctgccgtggg acagtttgct ggaaaatccg
    14341 cagttagtgt tattgcaggc gtggctaatg caaagccaac atcgctatgg cgaagttaac
    14401 accctgctag cccgtgctga acatgaaatc aaggacatca gagaaggcac catgcacgca
    14461 gaatttaacg ctctgcgcgc cctggtggcg attaacgatg gtaatccgga tgaagcggaa
    14521 cggctggcaa aactggcact ggaagagctg ccaccgggct ggttctatag ccgcattgtt
    14581 gcaacctcgg tgctgggtga agtgctgcac tgcaaaggcg aattgacccg ctcactggcg
    14641 ctaatgcagc aaaccgaaca gatggcacgc cagcacgacg tctggcacta cgccttatgg
    14701 agtttaatcc agcaaagtga aattctgttt gcccaagggt tcctgcaaac cgcgtgggaa
    14761 acacaggaaa aagcgttcca gctgatcaac gagcagcatc tggaacagct gccgatgcat
    14821 gagtttctgg tgcgcatccg agcacaactg ttatgggcct gagcacggct ggatgaagcc
    14881 gaagcgtcgg cgcgtagcgg gattgaagtc ttgtcgtctt atcagccaca gcaacagctt
    14941 cagtgcctgg caatgttgat tcaatgctcg ctggcccgtg gtgatttaga taacgcccgt
    15001 agccagctga accgtctgga aaacctgctg gggaatggca aatatcacag cgactggatc
    15061 tctaacgcca acaaagtccg ggtgatttac tggcaaatga ccggcgataa agccgccgct
    15121 gccaactggt tgcgtcatac ggctaaaccg gagtttgcga acaaccactt cctgcaaggt
    15181 caatggcgca acattgcccg cgcacaaatc ttgctgggcg agtttgaacc tgcggaaatt
    15241 gttctcgaag aactcaatga aaatgcccgc agtctgcggt tgatgagcga tctcaaccgt
    15301 aacctgttgc tgcttaatca actgtactgg caggccggac gtaaaagtga cgcccagcgc
    15361 gtgttgctgg acgcattaaa actggcgaat cgcaccggat ttatcagtca ttttgtcatc
    15421 gaaggcgaag cgatggcgca acaactgcgc cagctgattc aactcaatac gctgccggaa
    15481 ctggaacagc atcgcgcgca gcgtattctg cgagaaatca atcaacatca tcggcataaa
    15541 ttcgcccatt tcgatgagaa tttcgttgaa cgtctgctaa atcatccgga agtgccagaa
    15601 ctgatccgca ccagcccgtt gacccaacgt gaatggcagg tcctggggct gatctactcc
    15661 ggttacagca atgagtaaat tgcgggcgag ctggaagtgg cggcaaccac catcaagacg
    15721 catatccgca atctgtacca aaaactcggc gtcgcccacc gtcaggccgc ggtacaacac
    15781 gcgcagaaac tgctgaagat gatgggatat ggggtgtgag tttagccgga taatgcattg
    15841 gatccggttt acatctttac atcattcaat actcacccgc gttacgccat ctgtttctat
    15901 caaaccaaac cgcaccggca agaaacgctc caccacggcg atattggtca gcagatggca
    15961 tgaaggatgg gcgaccgtaa attctcccgc gcccgccagc gccatcggta gcaccagctg
    16021 gtcggcgaga tattccccca ctgccgccgg gcttgccagg tagcgtttca cctctttcac
    16081 taactgcgcg gctaccacct cggcactgac gcgcttttca ccgacgacga aaaagcgttc
    16141 agtgatattt tcactttcga cttccagcga gacggtatta cccggcccct ggtcgcgcgg
    16201 caggttatga atattctgtt catgcaggga aaaactcccc gccagtgtag cgatttcacg
    16261 ctcagcaaca tggcgcggca caccagctaa tagaacttct ccacgcatct gcacaatgtt
    16321 cccgcgctcg ccaagttgca aggtgttaaa cgatgccacg ggcgagactt ccgttgccac
    16381 cacgccgcct ccggcaggat aaaaaccgtg acgtaacagc gtggtttgct gatgaattcc
    16441 tattttcgcc agcagcggct ccagcacccg gcggataaaa tccgcaggcg gcgccgacgg
    16501 gttatcggtg cctccgctca cttcaacacg cgaaggtcca tcggcaaacc acagcgcggg
    16561 cagcaccgtt tgcagcacca gcgtacagct tccggcacta ccgatagcaa agcggtactc
    16621 gccgccgcgc acggcgccag gccggaagac cagacgctgc gaccccagct ccgcgccttc
    16681 caccgttgcc ctacaaattt ccgcagccgc ttttaccgcg gtcagatgct ggcgcaacag
    16741 ccccggtttc gcccgcccgg cacgaatgct ggtgatggta aatggctggc cggttatcat
    16801 cgacaggctc agcgccgcgc gcagaatctg cccgccacct tcgccctgtg cgccatccag
    16861 cgcaatcatc cttttcatca tttatccttt tacgcacacc acctgacgca gggtatagat
    16921 aacttccacc agatcgcttt gtgccgtcat caccgcatca atatctttat acgccatcgg
    16981 gatttcgtcg atcacttcgg catctttacg gcattccaca tgcgcggtgg cacgaatttg
    17041 atcttccacg ctgaacagtt ttttcgcttt agttcggctc attacccgcc cggcaccgtg
    17101 gctgcacgaa cagaacgact cttcatttcc cagcccacgg acgataaagc tttttgctcc
    17161 catcgaaccg ggaataattc catattgacc agcacgcgca gacaccgcgc ctttacgcgt
    17221 cacgtagatc tcttcaccaa agtgctgttc tttttgcaca tagttgtggt gacagttgat
    17281 ctcttccatc gccagcgttt gtggctgtct gaccgttttc tgcgtaatgc tctgcaatgc
    17341 cgttaccacg ttttccatca tcgcatcgcg gttaaggctg gcaaaaagct gcgcccaggc
    17401 cacggctttc aggtaatcat caaagtattc cgtaccttcc ataaagtacg ccagatcacg
    17461 cgacggcaac gtctcaagcg tttcctgcat ctctttttgt gccagatcga taaagtaagt
    17521 cccgatggcg ttaccaattc cgcgtgaacc ggagtgcagc ataatccaca cctggtccga
    17581 ctcatcaagg cagattttaa taaagtggtt accggttccc agcgttccca ggtgtttata
    17641 gttattggta ttcaggaaac ggggatattt ttgcgttaac cactgataac cggcttcaag
    17701 ctcagcccat ttcgcatcga cgttaacagg cgggttttcc catgcgcctt tatcacgttt
    17761 acaacgcccg gtagtacgcc cgtgcggcac ggccgtttca atcgcctgac gcagctctgc
    17821 caggttttca ggcaggtctt ccgccgttaa cgcggtacgc agcgcgttca ttccacagcc
    17881 aatatccacg cccaccgccg ccggaataat cgcccctttg gtcgggatca cgctaccaat
    17941 ggtggaatct ttacccaggt gtacatcagg cattaccgca atatgtttga aaataaacgg
    18001 catcttcgcc gtattaataa gttgctgacg cgcatcggct tctaccggca cgcctttggt
    18061 ccacattttt accggggcat tttcagtggt cagtaattcg taattcattt tgtttttctc
    18121 ttttcgttgt ttgctgtcct gataattgca accgtcgt
//
LOCUS       DAJVUN010000072        17987 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.072, whole genome shotgun sequence.
ACCESSION   DAJVUN010000072 DAJVUN010000000
VERSION     DAJVUN010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17987
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.072"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..748)
                     /gene="mak"
                     /locus_tag="OQQ76_002102"
     CDS             complement(<1..748)
                     /gene="mak"
                     /locus_tag="OQQ76_002102"
                     /EC_number="2.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414928.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructokinase"
                     /protein_id="HCS1968599.1"
                     /translation="MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIA
                     TLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNTNSTWLNGQPFDKDLSARLQREVRL
                     ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHISGNGTAGEWGHNPL
                     PWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESD
                     PVAELALRRYELRLAKSLAHVVNILDPDVIV"
     gene            873..1784
                     /gene="rdgC"
                     /locus_tag="OQQ76_002103"
     CDS             873..1784
                     /gene="rdgC"
                     /locus_tag="OQQ76_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HCS1968600.1"
                     /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG
                     WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT
                     EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
                     LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE
                     ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD
                     TDFILMTGELAALIQNLIEGLGGEAQR"
     gene            complement(1862..1945)
                     /locus_tag="OQQ76_002104"
     CDS             complement(1862..1945)
                     /locus_tag="OQQ76_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968601.1"
                     /translation="MTQRPWSKLQHKTHNIAALKIIVRRSE"
     gene            complement(1942..2283)
                     /locus_tag="OQQ76_002105"
                     /pseudo
     CDS             complement(1942..2283)
                     /locus_tag="OQQ76_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308469.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2773 domain-containing protein"
     gene            complement(2431..2715)
                     /gene="ppnP"
                     /locus_tag="OQQ76_002106"
     CDS             complement(2431..2715)
                     /gene="ppnP"
                     /locus_tag="OQQ76_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HCS1968602.1"
                     /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE
                     MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAELTSYLCRYL"
     gene            complement(2787..3464)
                     /locus_tag="OQQ76_002107"
     CDS             complement(2787..3464)
                     /locus_tag="OQQ76_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AroM family protein"
                     /protein_id="HCS1968603.1"
                     /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE
                     VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI
                     SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL
                     GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR
                     LAAELLV"
     gene            complement(3722..3913)
                     /gene="yaiA"
                     /locus_tag="OQQ76_002108"
     CDS             complement(3722..3913)
                     /gene="yaiA"
                     /locus_tag="OQQ76_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YaiA"
                     /protein_id="HCS1968604.1"
                     /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH
                     PTAQEAMDAKKRYEDPDKE"
     gene            complement(3963..4487)
                     /gene="aroL"
                     /locus_tag="OQQ76_002109"
     CDS             complement(3963..4487)
                     /gene="aroL"
                     /locus_tag="OQQ76_002109"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroL"
                     /protein_id="HCS1968605.1"
                     /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT
                     VAEIVEREEWAGFRARETAALEAVTAASTVIATGGGIILTEFNRHFMQNNGIVVYLCA
                     PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV
                     ISDIRSALAQTINC"
     gene            complement(4670..5128)
                     /locus_tag="OQQ76_002110"
     CDS             complement(4670..5128)
                     /locus_tag="OQQ76_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414921.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HCS1968606.1"
                     /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF
                     IRTLHVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATI
                     RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG"
     gene            5248..6057
                     /gene="proC"
                     /locus_tag="OQQ76_002111"
     CDS             5248..6057
                     /gene="proC"
                     /locus_tag="OQQ76_002111"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HCS1968607.1"
                     /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPNKVAA
                     LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAASVTL
                     DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
                     AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET
                     GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS"
     gene            complement(6074..7189)
                     /gene="adrA"
                     /locus_tag="OQQ76_002112"
                     /gene_synonym="dgcC"
     CDS             complement(6074..7189)
                     /gene="adrA"
                     /locus_tag="OQQ76_002112"
                     /gene_synonym="dgcC"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase AdrA"
                     /protein_id="HCS1968608.1"
                     /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP
                     RAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNL
                     KTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLEL
                     TGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGV
                     YNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQ
                     ITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVG
                     VAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA"
     gene            complement(7291..7611)
                     /gene="psiF"
                     /locus_tag="OQQ76_002113"
     CDS             complement(7291..7611)
                     /gene="psiF"
                     /locus_tag="OQQ76_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiF"
                     /protein_id="HCS1968609.1"
                     /translation="MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQA
                     LKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACL
                     KKAA"
     gene            complement(7730..9145)
                     /gene="phoA"
                     /locus_tag="OQQ76_002114"
     CDS             complement(7730..9145)
                     /gene="phoA"
                     /locus_tag="OQQ76_002114"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414917.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HCS1968610.1"
                     /translation="MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGA
                     RRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL
                     TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKA
                     AGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLL
                     NARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNAVTEANQQKP
                     LLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSK
                     NEKGFFLQVEGASIDKQDHAANPCGQSGETVDLDEAVQRALEFAKKDGNTLVIVTADH
                     AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAAN
                     VVGLTDQTDLFYTMKAALGLK"
     gene            complement(9246..9506)
                     /gene="iraP"
                     /locus_tag="OQQ76_002115"
     CDS             complement(9246..9506)
                     /gene="iraP"
                     /locus_tag="OQQ76_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraP"
                     /protein_id="HCS1968611.1"
                     /translation="MKNLIAELLLKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND
                     QQRLIEQVDGALYEVKPDASIPDDDTELLRNYVKKLLKHPRQ"
     gene            complement(9733..9890)
                     /locus_tag="OQQ76_002116"
                     /pseudo
     CDS             complement(9733..9890)
                     /locus_tag="OQQ76_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9968..11062
                     /gene="ddlA"
                     /locus_tag="OQQ76_002117"
     CDS             9968..11062
                     /gene="ddlA"
                     /locus_tag="OQQ76_002117"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCS1968612.1"
                     /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID
                     KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVI
                     FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT
                     LTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV
                     IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP
                     EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA
                     SGLGYTDLITRLIELALERHAADNALKTTM"
     gene            complement(11086..11298)
                     /locus_tag="OQQ76_002118"
     CDS             complement(11086..11298)
                     /locus_tag="OQQ76_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414914.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2754 domain-containing protein"
                     /protein_id="HCS1968613.1"
                     /translation="MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVG
                     LVTWVISFWLAGLIIRRRDEETENAQ"
     gene            11558..11866
                     /locus_tag="OQQ76_002119"
     CDS             11558..11866
                     /locus_tag="OQQ76_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiY family protein"
                     /protein_id="HCS1968614.1"
                     /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL
                     LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGSLIFAVVALWLHWRHRRQ
                     "
     gene            complement(11925..13019)
                     /gene="yaiW"
                     /locus_tag="OQQ76_002120"
     CDS             complement(11925..13019)
                     /gene="yaiW"
                     /locus_tag="OQQ76_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-exposed outer membrane lipoprotein YaiW"
                     /protein_id="HCS1968615.1"
                     /translation="MSRVNHLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ
                     KMPASVKDRDAWAKYLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIA
                     WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLISMVPM
                     GQTLFVSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL
                     NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE
                     LATRKLAGKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAEAKTGKSLPREMLPGI
                     QLESPKITRNLTTAWFAKRVDERRARCMKQ"
     gene            complement(13032..14252)
                     /gene="sbmA"
                     /locus_tag="OQQ76_002121"
     CDS             complement(13032..14252)
                     /gene="sbmA"
                     /locus_tag="OQQ76_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706191.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide antibiotic transporter SbmA"
                     /protein_id="HCS1968616.1"
                     /translation="MFKSFFPKPGAFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ
                     IPISAARFWSLDFLIFYAYYIVCVGLFAFFWFIYSPHRWQYWSILGTALIIFVTWFLV
                     EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS
                     HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLVA
                     FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE
                     AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG
                     LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE
                     LDGDKIQEVTHTLS"
     gene            14604..15761
                     /gene="ampH"
                     /locus_tag="OQQ76_002122"
     CDS             14604..15761
                     /gene="ampH"
                     /locus_tag="OQQ76_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine-
                     carboxypeptidase/endopeptidase AmpH"
                     /protein_id="HCS1968617.1"
                     /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY
                     GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD
                     QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
                     REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMK
                     DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR
                     SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGF
                     ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS"
     gene            complement(15762..16385)
                     /gene="iprA"
                     /locus_tag="OQQ76_002123"
     CDS             complement(15762..16385)
                     /gene="iprA"
                     /locus_tag="OQQ76_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide resistance inhibitor IprA"
                     /protein_id="HCS1968618.1"
                     /translation="MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNSEDT
                     FVILEGVISLRREENVLIGITQASYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQT
                     ITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI
                     GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINRLPSEY"
     gene            complement(16473..>17987)
                     /locus_tag="OQQ76_002124"
     CDS             complement(16473..>17987)
                     /locus_tag="OQQ76_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000556401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1968619.1"
                     /translation="DHLTVDSYSTVNLTESTGWNNYSNLYTNTITVTNGGVLDVNVDQ
                     FDTEAFRTDKLELTSGNIADHNGNVISGVFDINSSDYVLNADLVNDRTWDTSKSNYGY
                     GIVAMNSDGHLTINGNGDVDNGTELDNSSVDNVVAATGNYKVRIDNATGAGTIADYKD
                     KELIRVNDANTNATFSAANKADLGAYTYQAEQRGNTVVLQQMELTDYANMALSIPSAN
                     TNIWNLEQDTVGTRLTNSRHGLADNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVD
                     TKIDGNNAKWIVGAAAGFAKGDMNDRSGQVDQDSQTAYIYSSAHFANNVFVDGSLSYS
                     HFNNDLSATMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAGYVTPYGSVSGLFQSGDD
                     YQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDSNNDNDVNG
                     DSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYTW"
BASE COUNT         4503 a         4649 c         4304 g         4531 t
ORIGIN      
        1 ggacaatcac atccggatcg agaatattca cgacatgtgc cagcgatttt gccagccgca
       61 gctcgtagcg acgcaatgcc agttccgcta ccggatcgct ttcttcaacc aggcggataa
      121 tttcactgcc tttcagcgca tgtccgctca aacgacgata atccatcgcg aatcccgtgc
      181 ccgaaataaa ggtttcaata caaccttgtt taccgcaata acaagggact tcctcgcgat
      241 aacgcagttc gtcttcgtcc atccacggta gcggattgtg tccccactca cctgccgtgc
      301 cattgccgct gatatgcgcc cgcccattga atgccacgcc cgcgccgcat cccgtgccga
      361 taatcacggc aaataccgtc tgcgctcccg ctgccgcgcc atctactgct tctgaaaccg
      421 ccagacagtt agcgtcattt gccagccgca cttcccgctg caacctcgcg cttaagtctt
      481 tatcgaatgg ctgaccgttg agccaggttg aattggtatt cttcaccaca ccggtgtaag
      541 gcgaaattga gccaggaatg cccataccta ccgttccgcg ctgccccgtc gcctgctccg
      601 ccatatcaac caacgtggcg atcgtttcaa tagtctgccg gtaatcatca cgcggcgtgg
      661 gcagacgatg gcggtacaac tgctcccctg catcgcccag tgcaatcact tcagttttgg
      721 tgccgcctaa atcgatacct atacgcacgg tactctcctt atttttttca atatcaatag
      781 cgtagagacg gacaaccgga ttggcaatgc aaggccgccg acaattcgtt atcatgcccg
      841 ctaaatttaa caacaaggcc gtggaaatta tcatgctgtg gttcaaaaat ttaatggttt
      901 accgtcttag ccgcgagatt tcgctgcgtg cagaagagat ggaaaaacag ctagcctcga
      961 tggcatttac cccatgcggc agccaggaca tggcgaagat gggctgggtt cctccgatgg
     1021 gatcgcacag cgatgcgtta acgcacgttg ccaatggtca aattgttatc tgcgcgcgca
     1081 aagaagaaaa aatcctcccg tctccggtga ttaagcaggc gctggaagcg aaaatcgcca
     1141 aactggaagc ggaacaggcg cgtaagctga agaaaaccga aaaagattcg ctgaaagacg
     1201 aagtgctgca ctctctgttg ccgcgtgctt tcagccgttt tagccagaca atgatgtgga
     1261 tcgacacggt taacggtttg attatggtgg actgcgccag tgccaaaaaa gcggaagata
     1321 cgctggcact gctgcgtaaa agcctggggt cgttacctgt ggtaccattg agcatggaaa
     1381 acccgattga actgacgctg accgaatggg ttcgctccgg tagcgcggca cagggcttcc
     1441 agctgcttga tgaagccgag ctgaaatcgt tgctggaaga tggcggcgtg atccgcgcga
     1501 agaaacaaga tctgaccagc gaagagatca ccaatcacat cgaagccgga aaagtggtga
     1561 ctaaactggc gctcgactgg cagcagcgca ttcagtttgt gatgtgcgac gatggttcgc
     1621 tcaagcgtct gaagttttgc gacgagctgc gcgatcaaaa cgaagatatc gaccgtgaag
     1681 atttcgccca gcgttttgat accgatttca tcctgatgac tggtgaactg gcagcgttaa
     1741 ttcaaaacct gattgaagga ttaggtggcg aagcacaacg ttaattgctg attttccttt
     1801 aatgccggat gcgacgcctg ccgcgtctta tccggcgtac gaagccacac cagggatata
     1861 attattcgct acggcggaca ataattttta gcgcagcaat attatgcgtt ttatgctgta
     1921 acttgctcca tggacgttgt gtcattgttt ttcctcaagc cagtgacgcg cttcactgcg
     1981 aattttccgc attgccccgg ttttcactaa atcccgtaac agcgaaagat cgggttgttc
     2041 gacaaataag agtaatgatg gatcctcttt taaccacgtc gttttcacat cggcagcgag
     2101 ctgtggatta ttcatagcta gcgaccgatg ccgagactcg gtcaatgtcg ttaacaacga
     2161 cgccggggta tgtgcgttgc gtaatgccgt ttggcgcaaa tgatcattgc gactttgcag
     2221 caatgcacgc caccattcat catctgattt atcttttatc gtagccagtt ccgcaacaat
     2281 atctggagat cttcactgat atttatatca accttgatga attatgaata tatcggaaat
     2341 tgaaaaaatc gcagcaaagg aaatattatt atgggttaaa gagaggatat ttcagaaaaa
     2401 tgccctcccg ttcaagggga aggcgaggaa ttacagatag cggcacagat aagaggtgag
     2461 ttcggcaact tgcagatgaa actcactgtg accgggaaca ttaaacaccg aaccggcttc
     2521 atacacctgc cagtcggtcg catcaggcag taacacattc agcgcgccac tgattaccgt
     2581 catctcttcc ggctcagcgg tgctgaaggt gtattcgcct tcaaccataa cacccacgct
     2641 ggcgcgacca gtgctgctgc tggaaaagcc gattgatttc actttgccgg aaaagtactc
     2701 attactttga agcataaact ggccctgtct ggtagttgaa catctacttc actatagggg
     2761 ccagaggcgc tggctgtcac gcaaaattac accagtaatt ccgcagccag ccgtgcaatc
     2821 aatacgttag acagcaagac aggaacatcg agctgttttt gcagtaaatc gcgatgacgt
     2881 tggtgaaatc ctaaacaatc cagcatgatg acatcagccc cttttgccag taattctttc
     2941 ccggcatcaa tgattttttg ttctgaatca tgaatggggt tacccaatga aaataccggc
     3001 gatttctgca aaatttgcca tttttgcgcc tgaacgggca gcatctcctc aaccggaacg
     3061 ataaccccca cctgatgatc ttcaacaata gaggaaacca gtggaggcaa tattcgcgac
     3121 ggctcaagaa agatcgtatt acgcgcagtc atactactaa tgtttgctgt actcattaat
     3181 aaaatgacgt cataaccctg attatcgagc acttcaacca caccttgcag gtctcgctcc
     3241 actttacgac gcgaaacatg ggccagctgg ttgtcattta ataatgtgag aatggtgtct
     3301 tcgcctgctt ctggcgcgta ctccgccatc acttcttcac gacttaactt ccccagcagg
     3361 ctatgatggg aaatattatc ttcgtcaatg tattccgtca gaagcggcaa aacctcctgc
     3421 ataggtacaa tgccgatggt caggatcgcc aacgacgcac tcattgttca tccaccttac
     3481 ttttctttcg tcgttaatta ccgggcaagt gtgaagcacc actgctgaca cttacttgtg
     3541 ctacaaatga caaaaagcgt agcagcagac gtgcacggca taatgtaaag attccaaatg
     3601 attccagtaa tggattgtta ttgtttaata ttctaattat tagaaaaaca tgaattatga
     3661 aaaatgtgac gcagatccct tgtagtggca ctcagaatcc cttccgagca gtctgatgcg
     3721 gtcactcttt gtcagggtcc tcatagcgtt ttttcgcatc catcgcttcc tgagcggtcg
     3781 gatgttcact gatcaacgag tctggtttag gatgatcggc tctgagttgg taccaggtta
     3841 ccgtctgtcc tggctttcct ttttcaatcg tcactatata tgcttcacga ggataaggcg
     3901 gtttcgttgg catcgttctt ccttatttca cggaatgaac gttaagtata ggcgctctaa
     3961 aatcaacaat tgatcgtctg tgccagggcg ctacgaatat cagaaatcac ctggctgggt
     4021 tcgtttgttg cgtcgatgat aatatgcgca acttcgcgat atagcgcatc gcgttcttcc
     4081 agcacttcct gaacttcttc gctcagcggt tttcccgtta aggttggccg taaatcttct
     4141 tccggtgcag cttgcagtcg gttaaccagg actgatactg gcgcacacaa ataaaccacg
     4201 atcccgttat tttgcatgaa gtgacgatta aattccgtca gaataatgcc gccgcctgta
     4261 gcgataacgg tggatgccgc agttaccgct tccagcgccg ccgtttctct ggcgcgaaat
     4321 cccgcccact cttccctttc gacgatctcc gcgaccgtca tattgagctg tgattgcaac
     4381 cactgatcgg tatcgacaaa ccgacggtta agcgaatcgg caagggccat tccgaccgtt
     4441 gttttaccac agccccgagg cccgatcaga aaaagaggtt gtgtcatcgt gggttttccc
     4501 caataggtcg caatgcggcg aaagccggtg tcatgagaat agcgatcatt ccatcaaact
     4561 agtacaattt cgattgtaaa gaaaaaattc cacttaaagt gaaaatctca atacatccct
     4621 tactatacca ataaatattc aagaatgaag tgtaaataat aaattacatt tagccacgac
     4681 tacgttgcac ttccagccac cacttctcca gctccgcggc aaaggcctgg cggtcacgtt
     4741 gtgaaaggct atctggtccg ccggtctgga tcccactggc acgtaaggta tccataaaat
     4801 cgcgcatcgt caggcgctca cgaatggtcg ctggcgtgta acgttcgccg cgcggattaa
     4861 gcgccgctgc gcctttctcg atggcttcag cagccaaagg tatatctgcg gtgatcacca
     4921 aatcgcccgc ttcacactgc cggacaattt cgttatcggc aacgtcgaaa cctgccgcga
     4981 cgtgcagcgt acgaataaat cgcgatggcg gcacgcgtaa actctggttt gctaccagta
     5041 ccagcggcat ctgcatacgt tccgccgcgc gatacaaaat ctctttaatt acattgggac
     5101 acgcgtcggc atccacccaa attgtcataa agtcatcctt tgttgggtaa tcctctattg
     5161 tgtcgcgctt ttgccttccg gcatagttct gtttatgctt ctgccagcga ttatcaaaac
     5221 aatgaatttc acggcaggag tgaggcaatg gaaaagaaaa tcggttttat tggctgcggc
     5281 aatatgggaa aagccattct cggcggtctg attgccagcg gtcaggtgct tccagggcaa
     5341 atctgggtat acaccccctc cccgaataaa gtcgccgccc tgcatgacca gttcggcatc
     5401 aacgccgcag aatcggcgca agaagtggcg caaatcgccg acatcatttt tgctgccgtt
     5461 aaacctggca tcatgattaa agtgcttagc gaaatcacct ccagcctgaa taaagactct
     5521 ctggtcgttt ctattgctgc aagtgtcacg ctcgaccagc ttgcccgcgc gctgggccat
     5581 gaccggaaaa ttatccgcgc catgccgaac actcccgcgc tggttaatgc cgggatgacc
     5641 tccgtaacgc caaacgcgct ggtaacccca gaagataccg ctgatgtgct gaatattttc
     5701 cgctgctttg gcgaagcgga agtaattgct gagccgatga tccacccggt agtcggtgtg
     5761 agcggttctt cgccagccta cgtatttatg tttatcgaag cgatggccga cgccgccgtg
     5821 ctgggcggga tgccacgcgc ccaggcgtat aaatttgccg ctcaggcggt aatgggttcc
     5881 gcaaaaatgg tgctggaaac gggagaacat ccgggggcac tgaaagatat ggtctgctca
     5941 ccgggaggca ccaccattga agcggtacgc gtactggaag agaaaggctt ccgtgccgca
     6001 gtgatcgaag cgatgacgaa gtgtatggaa aaatcagaaa aactcagcaa atcctgatga
     6061 ctttcgccgg acgtcaggcc gccacttcgg tgcggttacg tccggctttc tttgctttgt
     6121 aaagcgccaa atctgccgat ttcaaccact cacgatagtg actcatttgt gggttcagcg
     6181 gcgcaacccc cacactaatc cgtaaagtta cctgtggcgt attcggcaag cgtaacgtgt
     6241 ttagcccttc acgcacccgt aacatggcgg taatggcgct ctcagctggc gtaccggaca
     6301 tgattactgc aaactcatcg ccgccaaacc gaccaatcac atcgctaccg cgcagggtaa
     6361 tttgtaactg tcgggtaagc gccacaatcg cttcatcgcc cacatcatga ccccaggtat
     6421 cgttgatgct cttgaaatgg tcgatatcga taatcagtaa cgttgcatcg cgattatgcc
     6481 gccgacagtt atcaaattca ttgcgtaaca tagtttccca atgacgtcgg ttatacacgc
     6541 ccgtcatgcc gtcgcgggta ctcatgacct gcaacctgcg tttatgttcc gccagtttgg
     6601 ttgccgtctg gtagctgacc cagccaaaca gcagaggata aacgacaata atgggaaggg
     6661 agagccacca ttccagcggc gcactattga acgacacggt aatgcccgta agctcgaggg
     6721 tgacaaggca ggaaaccacc atcaacacca gacccgcgac aaacagacgg gggccgcctg
     6781 cccccatcaa attcagacac ataatcatca acatagcggt ggaaggcagc acgtttacgc
     6841 ccattacgcc tacccacatt cccgctaata ctgcatcggt ttttaagttg taaatttccc
     6901 ggctaagcgg atcgacggcc ctgctcgcta tctgccaggc taaatgcggc cagacgaacg
     6961 cccagccgac caacaccagc caccaccagc ccggcggcgg gtgcgaaacc agcgttgaag
     7021 caatcggtaa gaacatgcca gccaggccaa ccgcacgggg tagtctgacg cgacgggcga
     7081 agcgcagccc ggaccgctga tgttcgtttt gaggagttaa aggaggttcc tccccatgcg
     7141 ccgccgcttt tttgaaaaag ttttcatcat tcattatttt tgggaacatt cagaaacaat
     7201 tttcccaaat tatagagacg gggctaaagg cagaagtatg aaatttcggg tgagccactt
     7261 tcgtagctca cccgttagca ctatcaggta tcaggcggct ttcttgaggc aggcactcat
     7321 aaacttatta cgatcatcac ctttcagaga ttgttgcgtt gcttgattat tacattcgcg
     7381 catcttttgc tgctgtggcg tcaaactttt ttcaccaggc gcagacttgc tgttcttcag
     7441 gcaatcactc atgtaggtct tacgagcatc ccctttcaac gcctgcgccg tcgcctgctg
     7501 attacaggag gtcatacgct gttgttgtgg ggttaacgtt ctctcggcag cgccgactgt
     7561 ggttaaaaaa accagaccga aaagcaaggt aaccagtaat gtaattttca tagcaccatc
     7621 cctcttcatg ttttaaccat gagcgtatgc gcccgagatt tgccattaag tctggttgct
     7681 aacagcaaaa aaaccacccg gcagcgaaaa ttcactgccg ggcgcggttt tatttcagcc
     7741 ccagggcggc tttcatggtg tagaagagat cggtctggtc ggtcagtcca acgacattgg
     7801 cggcatgcgg gccatacgcc gcaatacgca actgactgcc ggtatgttct tgtgaatcct
     7861 cttcggagtt cccgtagctc atcaccatca ctgcgccatc tttggtattt agcgcctggg
     7921 tgaggcccgg agctttggta tccggcgcga caatctggct ggcgtgggcg tgatcagcgg
     7981 tgactatgac cagcgtgttg ccatcctttt tagcgaattc cagcgcccgt tgtacggctt
     8041 catcgagatc gaccgtctcg ccactttgcc cacaaggatt cgcagcgtga tcctgtttat
     8101 cgattgacgc accttcaact tgcaggaaaa atcctttctc atttttactc aacaattcaa
     8161 tggctttgtc ggtcatctgc gccagggttg gtacactgtc attacgttgc ggattaggcg
     8221 tacaggtgac tgcgggctta tcgatattgc cgtggtacgt tgctttcggt cctagccagc
     8281 gcactggcat attgccgtca gcaaacagtc caagcagagg tttttgctga ttcgcttccg
     8341 tcaccgcatt tagcgaggcg gcatcgctga ccaactgata accacgcgcc tgtgcctgtt
     8401 cacgcagcgt ttttccctgc cattcaccgg cggttgccgt ttcagcaaag gtttttgcgc
     8461 caccgccaag cgtaacgtcg gcacgagcat taagcagctg ttcggtaatc gatccttttc
     8521 cgcctttttc cagagcgtta cccggacatt tttcactggt cgcgctcgga ccgtagcatt
     8581 tgcgcgaagt cacatgtgcc accagcgcag cgggcgtggc atcctgcaac tctgcggtag
     8641 aaacgttacc ggtcgccaga cctgcggctt ttgccatttc cagaatcgtt gggtgatctt
     8701 tttcgtgaat atcgacgccc agcgcgccgt tataggtttt gacaccggtt gaccaggcgg
     8761 ttgctgatgc agccgaatcg gtgacgtagt ccggtttgcc ggttttttta ttcagcgcat
     8821 agtgagtgta ttgcccggta agcggtaagg catcgatacc tttaaaaaag ccgcccgcac
     8881 cttcggcata attacgtgcg gctgtaattt ccgaatcccc catcccatcg ccaatcagca
     8941 aaataatatt ttttgcaggt ttatcgctaa gagaatcacg cagagcggca gtctgatcac
     9001 ccgttaaacg gcgagcaccg ccgggtgcag taatatcgcc ctgagcagcc cggttttcca
     9061 gaacaggcat ttctggtgtc cgggcttttg tcacaggggt aaacagtaac ggtaagagtg
     9121 ccagtgcaat agtgctttgt ttcactttat tttctccatg tacaaataca ttaaaaaata
     9181 aaaacaaagc gactataagt ctcggccgtg acaactttat gacagctgtt gaaaagatta
     9241 actttttact gacgaggatg cttcaataac ttctttacat aattgcgcag cagctccgta
     9301 tcgtcgtcag gaatgctggc atcaggcttt acctcgtaaa gagccccatc cacctgttca
     9361 atcaagcgct gttggtcatt ttgtgccata ttgcgaagca ttgcagtgac gataatctcc
     9421 aaagcttcta cctgcgcgca cagttctttc gactcttctt ctttttgggc aagctttaat
     9481 aacaactcag caatgagatt tttcatgtct gtatttcctt atccaacgta tggagaagtt
     9541 aacattatgt ttcacaactt catagtgtct ggaagtatta tttttatgac aaaggaaata
     9601 ctttgcgcaa atgttctttg tttgattacc agcgaaacgt ttctcatatt taaataatta
     9661 accacacaaa gaacaggcct ttaattatca acctttatta taaacaaaag ttatgaaata
     9721 tattctctgc gtttacttac aactaagaga aaaaactcac cgcatggcca tttaagccag
     9781 gaataaatta gcttcccgtt catcattttt gtgatctcgc gcacatcttt gtgataacgc
     9841 actttcttca ccattacgtt gcacgctttg tcagcagaag attgcaacat tctgtcagaa
     9901 ggccgcgaat cccccgtttt gtcgtggtaa tgtatgcact ttgtgttaga cgggataggt
     9961 ttttaagatg gaaaaactgc gggtaggaat cgtttttggt ggtaaatcag cggaacatga
    10021 agtgtctctg caatcggcaa aaaacattgt cgatgccatt gataaaagtc gcttcgacgt
    10081 tgtgctgctg ggcattgata aacaagggca atggcacgtc agcgatgcca gcaattatct
    10141 gctaaatgca gacgatcctg cccatattgc gttgcgccct tcggcgacta gccttgcgca
    10201 ggtgccaagt aaacatgagc atcagcttat cgacgcgcaa aacggtcagc cgttaccgac
    10261 ggtggatgtc attttcccga ttgtccacgg tacgctgggc gaagatggtt ccttgcaggg
    10321 aatgctgcgg gtcgccaatt taccgtttgt aggttctgat gttctggctt cagcagcctg
    10381 tatggataaa gatgttacca aacgtctgct gcgcgatgcc gggctgaaca ttgcgccatt
    10441 tattaccctg acgcgcgcca atcgtcacaa cattagtttt gccgaagtgg agtctaaact
    10501 ggggttacca ctgtttgtaa aaccggctaa tcagggctct tctgttggtg tcagcaaagt
    10561 aaccagtgaa gaacagtacg caattgccgt cgatctggcg ttcgaattcg atcataaagt
    10621 gatcgttgag caagggatca aaggtcgtga gatcgaatgc gcagttctgg gcaacgacaa
    10681 cccgcaagcc agcacctgtg gcgagatcgt actcaccagc gacttctatg cctacgacac
    10741 caagtacatt gacgaagatg gcgcgaaagt ggtagttccg gcagccattg cgccagaaat
    10801 caacgataag atccgggcga ttgccgttca ggcttatcaa acgttgggat gcgcaggcat
    10861 ggcgcgtgta gacgtgtttt taaccccaga gaacgaagtg gtgatcaacg agatcaacac
    10921 actgcctggc ttcaccaaca tcagtatgta tccgaagctg tggcaagcca gcggtctggg
    10981 ttacaccgat ctgatcacac gtttgattga gctggcgctg gagcgtcacg ctgcggataa
    11041 cgcattgaaa accacaatgt aatattttaa cgcccgataa tattcttatt gggcgttttc
    11101 agtttcttca tcgcgacgac gaataatcaa ccccgccagc cagaaactaa tcacccacgt
    11161 caccagaccg acggcatagg tctgccaacc ttttgcttca aatcccagta accccaccac
    11221 gccattaaga atgaatataa ggccaatggc gaacgcatag tagtgccagt cacggcggat
    11281 ttttacaggc agattcatgg cagctccgtt aacgaaaaac aacatccttg catattctgt
    11341 aacaaccgtc tgtggtgtag acaacatttt cgtaattgtt aataaattta acttaaggtt
    11401 gccattttgt gactcacaac gaagattcac gcttcgggaa tattcccaac atcaatttac
    11461 catgattctg atattgacaa tctaaatgac ctgtcagact tgccataagc cgctggtatc
    11521 acaccagaag agaagcagat gacttccgga ggtttttatg gctgatttca ccctgtcaaa
    11581 atcgctgttt agcggaaaat atcgcaatgc ctcttcaacg cctggcaaca ttgcctatgc
    11641 gttgtttgtg ctgttttgct tttgggctgg ggcgcaattg ctgaacctgt tagtgcatgc
    11701 gcccggcgtc tatgagcgtt taatgcaggt ccaggaaaca ggtcgcccac gggtggaaat
    11761 tggtttaggt gtcggcacca ttttcgggct gatcccgttt ttagtaggca gcctcatttt
    11821 tgcagtggtg gcgctatggc tgcactggcg acatcgccgc cagtaagatt tacgttgcca
    11881 gatacggcct aaaacgcctt atctggcatg acattcctgt ttgatcactg tttcatacaa
    11941 cgcgcccgcc gttcgtctac gcgcttcgca aaccaggccg tagtcaggtt gcgggtgatt
    12001 ttcgggcttt ccagttgaat gccaggcaac atttcgcggg gtagtgattt acccgttttc
    12061 gcttcggcaa gttgataaac tttcttgtac agcgccgtct cctcaaaaga gaagctgtca
    12121 cctttctcta actgacggcg aatttcgctg tcgctcatcc ccagttttcc cgccagtttg
    12181 cgcgttgcca gttcggtttt cccgggttct ttactgtcgt aacgaattaa atcaccgtcc
    12241 agtgccagct tcacgccgct ggccttactg accgcgttct gaaacgcggc attacggctg
    12301 gcgtaccagc cagcgttaaa atcagcaaag cggtatatcg gtgcgctata gctggcggga
    12361 taattcagta aatggtaagt accaaaccac aacccgccgc ggcgactgaa gacttcctga
    12421 cgaactgtac cgtccatttt ccacggatac cctttggtat gctgttcggc aaaagcaatg
    12481 ctgacctgca tcggcccacc ggtgcgcacc ggattaagcg aaacaaacag cgtctgcccc
    12541 attggtacca tgctgatcag atcgtcaaaa atcgcgctca attgcttttc tgtacgcacc
    12601 gaatctaacc gttcgctata acttttgccg tttggcgatt tgatttttag cgcggtatga
    12661 accagaaaag caggaatgtg catccgttca gcacgacggt caatctcttg ccaggcgatc
    12721 ttgcttaagc ccggaacggc cggatctgcc tgataatttg actcctgctg cgccaccgcc
    12781 agcaccgagc agacgttttc cagcgtcggt gccagcccct gactttcaaa ggtggtggcg
    12841 agatatttcg cccaggcatc gcggtctttc acgctcgcag gcatcttctg ccgcacgacg
    12901 ctcgctacat ctatcgcttt ttcgcccttt ttcaacggtt gcggagcctg actactacac
    12961 cccgctaaaa ccagaaccgc caacaatgac agcgaagata gatgattgac gcgcgacatt
    13021 acttctcctt tttagctcaa ggtatgggtt acttcctgaa ttttgtcacc atccagctca
    13081 tgttcaaagc tgcgcagacg tttgtagata gacatcaact caaccagtgt ggtccatgag
    13141 ttaatcaggt actggaaagc accgcgaacc tgaccaaaaa cgttggtaat ctgcgtcatc
    13201 aagccgagcg taatcgtacc ggcaacaatt gacggaaaca gcaagaacaa accgaaaacg
    13261 ttatcgacct gcaaatagag aatgcgggcg atgttgaaat acatatagtg aaaatagagg
    13321 cgaaaatagt ttttccgtac ggcgctaaac agctcgcgta ccgtaggcgg cgtcgcgcgc
    13381 gtggcatcgt cttcaccata aaccagctct ttacggtagg cggcctctac tcgctggttt
    13441 ttaaactcca gccccggcag tttgatccct accactgcca gcaatccggt ccccatcagc
    13501 gaccagacga tagcggcaat caccagacca tacggaatgt gcccgataat cggcagctcc
    13561 ggcacatgcg cggagagcgt taccagcacc ggcaggaagg cgaccaacgt catgatggcg
    13621 ttgataaaac tgacgcccat attctccagc gttgaagcaa aacgcatggt gtcttcctgc
    13681 acacgctgtg cggcaccttc gatatgacgc agttgttgcc agttcgccat gtaatattcg
    13741 ttcatcgccg tacgccagcg gaacacatag tgactgacaa agaagttgtt cagtacactg
    13801 atcaccaccg cgatcagcgc aatccccaga aagacgccca cttcgcggta aaattgttcg
    13861 atagtgactt tatgcggcga acttagcgcg gtttgaatca gatcatagaa cggtgcatac
    13921 caggcgttga cggcgacccc gacttccacc aaaaaccagg tgacgaagat gatcagtgca
    13981 gtaccgagta ttgaccagta ttgccaacgg tgcgggctgt agataaacca gaaaaatgcg
    14041 aaaagtccta cgcaaacaat gtagtaagcg taaaaaatca ggaaatccaa cgaccagaaa
    14101 cgcgcggcgc taatcgggat ctgcccggaa gcgccggtga tacgcgccac ccagtctccc
    14161 ccaccggctt gccagaagat aacggcaatc aatgcccaaa caaaggccga gagaaaaaac
    14221 gctcccggct ttgggaaaaa agacttaaac atatgcactc ctgctaactt cttatcgttt
    14281 taacaactgc tgtgtattaa ccgcatgacc actacaaagc gtcagccaaa tgaaaccgcc
    14341 cattgtgacc catagcaagg cgcttagttc gccagcctga ccataagaat tgtttcgacg
    14401 gatttcacaa accaaagatt gtttacataa gcggattaac acgcgcagga tcacaaatgc
    14461 aggcattggt gagcaggaaa aagatcgtgt ttacgcgccg ttacgttttt aacactatta
    14521 ttgcactaat tcgccctttg caatccatca atgagtagta taaatacgct cagttacctt
    14581 cattcaatct atggacacca ccgttgaaac gtagtctact tttttctgcc gtgctgtgtg
    14641 cggcgtcatt gacctccgtc catgcggcgc agccgatcac tgaaccggag tttgcctctg
    14701 atattgtcga tcgttatgcc gatcatattt tttacggcag cggtgccacg gggatggcgc
    14761 tggttgttat cgacggtaac cagcgcgtct ttcgcagtta tggcgaaacg cgacctggta
    14821 ataacgttcg cccgcagctg gattcggtcg tgcgtattgc ttccctcacc aagctaatga
    14881 ccagtgaaat gctggtgaaa ttgctcgacc aggggaccgt gaagttaaac gatccgctaa
    14941 gtaaatatgc tccgccaggc gcacgcgtgc caacctacaa tgggacgccc attaccctag
    15001 tgaatctggc aacccatacc agcgccctgc cccgtgaaca gcccggtggc gcggcacatc
    15061 gtccggtgtt tgtctggcca acgcgcgagc aacgctggaa atacctttct acggcgaagc
    15121 tgaaagccgc gccaggcagt caggcggcgt actctaacct tgcgttcgac ctgctggcag
    15181 atgcactggc gaatgcgtcc ggcaagcctt atacccagtt gtttgaagag cagattaccc
    15241 gtccattggg gatgaaagac accacctaca ccccctcacc ggatcagtgc cgccgtttaa
    15301 tggttgctga gcgcggtgcc agtccgtgca ataacacgct ggcggcaatt ggcagcggcg
    15361 gcgtctattc cacgcctggc gatatgatgc gctggatgca gcagtattta tcatctgatt
    15421 tttatcagcg cagtaaccag gcagatcgca tgcagacgtt gatttatcag cgcgcgcagt
    15481 ttaccaaagt gattggcatg gatgtccccg gcaaagcgga tgcgcttggt ttaggctggg
    15541 tatatatggc cccgaaagag ggtcgtccgg ggattattca gaagacaggc ggtggtggcg
    15601 gtttcattac ctatatggcg atgatcccgc agaagaatat tggcgcgttt gtggtggtca
    15661 ctcgttcgcc gttgacgcgc tttaaaaata tgagcgatgg catcaatgat ctggtgaccg
    15721 agctaagcgg gaataaaccg ttggttatcc ctgcatcctg attaatactc tgaaggcaaa
    15781 cggttgatag cgaccagttt gcctttattc atttcgatat agccgccttt acgcaaagca
    15841 gcgagaactt ctgcgacgac agaacgcgat atgcgtgtac gttgatggat ataattcatc
    15901 acaccaatac gtgatcgcaa ttcttcattc cagtcaatca ttgataataa tgttgcgcgg
    15961 atttgttcgt aggaattatg cccaatgagc tgcacgtcgc gtaattccag aattctattt
    16021 tgccaggcta accagtaaaa agcgtctcgc cagagttgat tttgttcaat aagcgtaatg
    16081 gtttgtttgg ctggtagatg atatcccgta caatttcctt ctgatattaa tttgtatggt
    16141 atatcgtttt tcattaaacc atcagccagc cccataatat aagaagcctg ggtaataccg
    16201 ataagtacgt tttcttctct acgcagagag ataacgccct ctaaaataac gaaagtatct
    16261 tcgctattga catcactgga aaatataact tgcttttcat tattaaactc gaagcgcgta
    16321 ccgtatctgg acaaacattt atcgagctta ccaaattcct gaagaggttt aactacagat
    16381 aacatttgcg cgtcctttgc agtaatgccc gtcaaatcct tgacgggcat tatttagatt
    16441 aaattaccag aatttcttcg gagtgaagaa tattaccaag tatatttaac acccacgttc
    16501 gcggaccagt cttgatctac gtcaccacca ccgaggtagt tagcatcggt ataggcgctg
    16561 aagttcttgg tgaagctgaa ctgagtaccc agaccaacac gtaccgcaga cccttcagta
    16621 ccgttatcga tggaatcacc gttcacatcg ttatcgttgt ttgagtcgtc gtagacgtaa
    16681 gccagtttga agtacggagt cagagcctga tcttcgctgt aggtgaaggt ataacctgca
    16741 tctacaccca gttcataacg catgctgtcg taagactgac cgtcaacttt catgtcgttg
    16801 ctcagctggt agtcatcacc agactggaac agaccagaaa cgctgccgta aggagtcacg
    16861 taaccagcat cacccagttt gaagtcgtaa ccggctttca aaccgaagcc ccacgcgtca
    16921 gagttggtgc taccgtcaac gtaagtaccg ttgctcatgg ttgcagacag gtcgttgttg
    16981 aagtgagagt agctcaagct accatcaaca aagacgttgt tcgcgaagtg agcagaagag
    17041 tagatgtagg cagtctggct gtcttgatcc acctgaccag aacggtcatt catgtcacct
    17101 ttagcgaagc ctgcagccgc accgacgatc cacttagcgt tgttaccgtc aattttggta
    17161 tcaacaccga ccatgatgcc gttaacatcc tgatcatagt tgatggtgcc gttgtcgccg
    17221 ttgaagttac caccgaagta gcttacccat gcgccgccgt tatcagccag gccatgacga
    17281 gagttggtca gacgagtacc aacggtgtct tgttccaggt tccagatatt ggtgttcgca
    17341 gacgggatgc tcagcgccat gttagcgtag tcggtcagct ccatctgttg cagaacaacg
    17401 gtgttaccgc gctgttcagc ctgataggtg tatgcaccca ggtcagcttt gttagcagca
    17461 gagaaggtcg cgttggtgtt agcgtcgttt acccgaataa gttctttatc tttgtaatca
    17521 gcgatagtgc cagcgccagt tgcgttgtcg atacgaactt tgtagttacc ggttgcagca
    17581 acaacgttat caacagagct gttatccagt tcagtaccgt tgtctacgtc gccgttacca
    17641 ttgatagtca ggtgaccatc agagttcata gcaacaatac cgtaaccgta gttagacttg
    17701 gaagtatccc acgtacggtc gttcaccaga tcagcgttca gaacgtaatc gctgctgttg
    17761 atgtcgaaca caccagaaat tacgttgcca ttatggtcag caatgttgcc gctggtcagt
    17821 tccagtttat cagtacggaa agcttcagta tcgaactgat caacattcac atccagcaca
    17881 ccaccgttag tcacagtgat agtattggta tacagattag aataattatt ccaaccggta
    17941 gattcggtta aattaacggt actgtagcta tcaacagtca ggtggtc
//
LOCUS       DAJVUN010000073        17813 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.073, whole genome shotgun sequence.
ACCESSION   DAJVUN010000073 DAJVUN010000000
VERSION     DAJVUN010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17813
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.073"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            4..867
                     /gene="pdxY"
                     /locus_tag="OQQ76_002125"
     CDS             4..867
                     /gene="pdxY"
                     /locus_tag="OQQ76_002125"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HCS1968620.1"
                     /translation="MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLSTVQFSNH
                     TQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKA
                     ANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN
                     VEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQ
                     PVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIA
                     KPEHYFSATKL"
     gene            complement(911..1516)
                     /gene="gstA"
                     /locus_tag="OQQ76_002126"
     CDS             complement(911..1516)
                     /gene="gstA"
                     /locus_tag="OQQ76_002126"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HCS1968621.1"
                     /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF
                     AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA
                     TELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFT
                     VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK"
     gene            complement(1621..3123)
                     /gene="dtpA"
                     /locus_tag="OQQ76_002127"
     CDS             complement(1621..3123)
                     /gene="dtpA"
                     /locus_tag="OQQ76_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpA"
                     /protein_id="HCS1968622.1"
                     /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM
                     AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY
                     ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN
                     IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINY
                     RNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI
                     VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP
                     ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ
                     SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP
                     LMSLEVYGRVFLQIGVATAIIAVLMLLTAPKLHRMTQDDAADKAAKAAVA"
     gene            complement(3734..4369)
                     /gene="nth"
                     /locus_tag="OQQ76_002128"
     CDS             complement(3734..4369)
                     /gene="nth"
                     /locus_tag="OQQ76_002128"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HCS1968623.1"
                     /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD
                     VSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG
                     EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE
                     EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI"
     gene            complement(4369..5064)
                     /gene="rsxE"
                     /locus_tag="OQQ76_002129"
     CDS             complement(4369..5064)
                     /gene="rsxE"
                     /locus_tag="OQQ76_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxE"
                     /protein_id="HCS1968624.1"
                     /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA
                     TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI
                     PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDG
                     ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRTEAA
                     AERALPNGETGNV"
     gene            complement(5068..5688)
                     /gene="rsxG"
                     /locus_tag="OQQ76_002130"
     CDS             complement(5068..5688)
                     /gene="rsxG"
                     /locus_tag="OQQ76_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HCS1968625.1"
                     /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKA
                     LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG
                     AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAV
                     KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE"
     gene            complement(5692..6750)
                     /gene="rsxD"
                     /locus_tag="OQQ76_002131"
     CDS             complement(5692..6750)
                     /gene="rsxD"
                     /locus_tag="OQQ76_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HCS1968626.1"
                     /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTL
                     VQILLASVSTLLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT
                     VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
                     VIFSGHTASGADMNTLHLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA
                     GWQWVNLAWLAGGLWLLWQKAIRWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLS
                     GATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT
                     VPLIDYYTRPRVYGHRKG"
     gene            complement(6751..8973)
                     /gene="rsxC"
                     /locus_tag="OQQ76_002132"
     CDS             complement(6751..8973)
                     /gene="rsxC"
                     /locus_tag="OQQ76_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HCS1968627.1"
                     /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFV
                     IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRDKMLPVHAPTSGTVTAIAPHSTAHPSA
                     LAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
                     GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKP
                     QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV
                     GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDARFCPSADQM
                     VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLL
                     PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE
                     KRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT
                     QPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARA
                     KARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAIE
                     AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAVPEEQVDP
                     RKAAVEAAIARAKARKLEQQQTNAEPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED
                     "
     gene            complement(8966..9544)
                     /gene="rsxB"
                     /locus_tag="OQQ76_002133"
     CDS             complement(8966..9544)
                     /gene="rsxB"
                     /locus_tag="OQQ76_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HCS1968628.1"
                     /translation="MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDKIL
                     PQSQCAQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE
                     LTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
                     CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA"
     gene            complement(9544..10125)
                     /gene="rsxA"
                     /locus_tag="OQQ76_002134"
     CDS             complement(9544..10125)
                     /gene="rsxA"
                     /locus_tag="OQQ76_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017456621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HCS1968629.1"
                     /translation="MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA
                     TTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL
                     LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAV
                     ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL"
     gene            complement(10202..10642)
                     /locus_tag="OQQ76_002135"
     CDS             complement(10202..10642)
                     /locus_tag="OQQ76_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707526.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2569 domain-containing protein"
                     /protein_id="HCS1968630.1"
                     /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF
                     QTLGGQALTTQILWGVSFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV
                     KAFAFSPVEDGIAVRQLLFTLLATALIVSYFKRSSRVKATFVNP"
     gene            complement(10728..10943)
                     /gene="ydgT"
                     /locus_tag="OQQ76_002136"
     CDS             complement(10728..10943)
                     /gene="ydgT"
                     /locus_tag="OQQ76_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription modulator YdgT"
                     /protein_id="HCS1968631.1"
                     /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD
                     HRRAELVSGGRLFDLGQVPKSVWHYVQ"
     gene            complement(11216..11341)
                     /gene="blr"
                     /locus_tag="OQQ76_002137"
     CDS             complement(11216..11341)
                     /gene="blr"
                     /locus_tag="OQQ76_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division septum protein Blr"
                     /protein_id="HCS1968632.1"
                     /translation="MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK"
     gene            11584..12624
                     /locus_tag="OQQ76_002138"
     CDS             11584..12624
                     /locus_tag="OQQ76_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCS1968633.1"
                     /translation="MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVK
                     ADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS
                     QARELDALAKSLGRVLSVFHNRRWDSDFLKLKGLLAEGVLGEVAYFESHFDRFRPQVR
                     DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY
                     PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD
                     GVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGI
                     ESAKHRATLCLA"
     gene            complement(12659..13660)
                     /gene="add"
                     /locus_tag="OQQ76_002139"
     CDS             complement(12659..13660)
                     /gene="add"
                     /locus_tag="OQQ76_002139"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HCS1968634.1"
                     /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI
                     PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG
                     YMAMAHKLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR
                     DQITALDLAGDELGFPGSLFLSHFNLARDAGWHITVHAGEAAGPESIWQAIRELGAER
                     IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRAGIN
                     TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK"
     gene            complement(13764..14936)
                     /gene="malY"
                     /locus_tag="OQQ76_002140"
     CDS             complement(13764..14936)
                     /gene="malY"
                     /locus_tag="OQQ76_002140"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional maltose regulon transcriptional
                     repressor/cystathionine beta-lyase MalY"
                     /protein_id="HCS1968635.1"
                     /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP
                     CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE
                     LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK
                     PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS
                     NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA
                     HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID
                     DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR"
     gene            complement(14946..16538)
                     /gene="malX"
                     /locus_tag="OQQ76_002141"
     CDS             complement(14946..16538)
                     /gene="malX"
                     /locus_tag="OQQ76_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS maltose transporter subunit IICB"
                     /protein_id="HCS1968636.1"
                     /translation="MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSS
                     HDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGF
                     VGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM
                     LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINS
                     AGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSC
                     PTTHGFSESATRFLSQGKMPAFLGGLPAAALAMYHCARPENRHKIKGLLISGLIACVV
                     GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHG
                     LSTKWYMVPVVAAIWFVVYYAIFRFAITRFNLKTPGRDSEVASSIEKAVAAAPGKSGY
                     NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQV
                     VIGPQVQSVKDEIAGLMHTVQA"
     gene            16713..17741
                     /gene="malI"
                     /locus_tag="OQQ76_002142"
     CDS             16713..17741
                     /gene="malI"
                     /locus_tag="OQQ76_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mal regulon transcriptional regulator MalI"
                     /protein_id="HCS1968637.1"
                     /translation="MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAA
                     IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG
                     GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD
                     TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD
                     WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR
                     YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGTTLADRMMQKITHEETHSRNLII
                     PARLIAAK"
BASE COUNT         4542 a         4529 c         4573 g         4169 t
ORIGIN      
        1 aacatgatga aaaatattct cgctatccag tctcacgttg tttatggtca tgcgggtaac
       61 agtgcggcag agtttcctat gcgccgcctg ggcgcgaacg tctggccgct gagcaccgtt
      121 caattttcta atcacaccca gtacggcaaa tggactggct gcgtgatgcc gcccagccat
      181 ttaaccgaaa ttgtgcaagg cattgccgcc attgataaat tacacacctg tgatgccgtg
      241 ttaagtggct atctgggatc ggcggagcag ggtgaacata tcctcggtat cgtccgtcag
      301 gtgaaagccg cgaatccgca ggcgaaatat ttttgcgatc cggtaatggg tcatccggaa
      361 aaaggctgta tcgttgcacc gggtgtcgca gagtttcatg tgcggcacgg tttgcctgcc
      421 agcgatatca ttgcgccgaa tctggttgag ctggaaatac tctgtgagca tgcggtaaat
      481 aacgtcgaag aagcggttct ggcagcgcgc gaactcattg cgcaagggcc acaaattgtg
      541 ttggttaaac acctggcgcg agctggctac agccgtgacc gttttgaaat gctgctggtc
      601 accgccgatg aagcctggca tatcagccgt ccgctggtgg attttggtat gcgccagccg
      661 gtaggtgttg gtgatgtgac gagcggttta ctgctggtga aactgcttca gggggcaacg
      721 ctgcaggagg cgctggaaca tgtgaccgct gcagtctacg aaatcatggt gaccaccaaa
      781 gcaatgcagg aatatgagct gcaagtggtg gctgctcagg atcgtattgc caaaccagaa
      841 cattacttca gcgcaacaaa gctctgaaat atctcatttc ggcccacaac gacctgtggg
      901 ccgatggcta ttactttaag ccttccgctg acagcgcgtc ttgtacttcc ggacgttcag
      961 ccatacgttg cataaatgct gcaatgtgct ctaacccttc cagattcagt ttcaccgcgt
     1021 atgcccagcg cagaaccgta aacagatagg catcagcaat tgtaaatctt tgcccgcaga
     1081 tccagtgctc atccttcagt gcctcgttca catattgcag cttcttctcc agctgcgcgc
     1141 gaactgtcgg tttgtactct tccggtgtat cagggcgaaa cagaggtgtg aaacctttat
     1201 gcagctcggt ggcgatgtaa ttcagccatt cgatggtttt atagcgggaa atactgttta
     1261 ccggtgccag caactggcgg tcggggacgc tgtcggcaag atactgcata atcgctacgc
     1321 cttccgtcag caaagtaccg tcatccagca gcaatgcagg cacctgcccc ttagggttaa
     1381 cggcaaagta atcgtcaccg ttttcgagac gttttttcat taaatccaca ctgacgaggg
     1441 taaaatcctt tccgctctca cgcagggtga tatgggaagc gagagagcag gcacccggtt
     1501 tgtagaacaa tttcatcggt aactcctttt gtctgtggtt taaagtatgg tagtgcgttg
     1561 ctgaacaaaa aaaagccgct aacgaaaagt tagcggcttg taaaagagtt tccctgaatt
     1621 ttacgctaca gcagctttcg ccgctttgtc tgcagcgtca tcctgcgtca tacggtgcag
     1681 tttaggcgcg gtcagcagca tcagtactgc aataatggca gtagcgacac caatctgcaa
     1741 gaatacgcga ccataaactt ccagtgacat cagcgggtcg gtaacgttat ccggcacagc
     1801 catcataccc gcaacataac caccaatcag gtttgcaccg gcagtggtca ggaaccagct
     1861 acccataatg aagcccatca gacgctgcgg aacgagttgt gcaaccattg ccagacccag
     1921 accagagatc atcagttccc cgatgctctg caggccatag cttgcgacca gccagcttac
     1981 agacacgata ccagcgtcag acgcgaattt cgcacccagc ggcagaatca ggaacgcacc
     2041 agaacacatc accatgccga ttgcaaactt ggttggcatc ggcagggtat cgcccatctt
     2101 gttatagata gcggccagaa tcggactacc gatgatgatc cagaacgggt tcagtgcctg
     2161 atactgctca ggttctacgg ccagacccag aatggagtgc tcaacgttac gaatcgcaaa
     2221 gaagttcagt gacgttggca tctggctgta cagcacgaag aagataatgg cttcgagcat
     2281 caggatgaag gcaacgatca ttttacgacg cgcagcacct ttcatcgcga aggcttcttt
     2341 accgaagata accacgatac cgaaggcaac aacgcccagc gccatacgcg caacttcctg
     2401 attgtgcagc agccaggtgg cgatagcgat cagtgccaca acaccaataa tggtcagcag
     2461 caggttacgg tagttgatag gctcgaagtc tggttttgaa ccgtactgtt taacccagcg
     2521 ttggcagaag gcgaagttaa cgatagtgat cagcaggcct acaacgctca acgcaaacgc
     2581 aacactccag ccgtatttcg cggccagcca cggcgtagca atcatagaga agaaagagcc
     2641 gatgttgacg gacatgtagt acatggtgaa tgcaccgtcc agacgcgggt cgtttttctc
     2701 atagcatgta gaaagcagag aagacgggtt agctttaaac aggccgttac cgaccgcaat
     2761 agccgccata cccatataaa cgataccggc gtcgtgacca gaccaggcaa ccagagcata
     2821 accaatcgcc agcacaatag cgccgagcat aattacgcgt ttagtaccca gtactttgtc
     2881 acctaaccag ccgccgatag cgaccagacc ataaaccagg gcactaaagg aagagaaaag
     2941 ggtgattgaa tccgcttcag acatacccag ttgtttaacc aggtaaacag ccataattcc
     3001 ttgtaggccg taataaccaa aacgttccca taactcaatc gagaagatga gatagaacgc
     3061 cttcggttgt ttgaaagcgt tcaaactgac gctttcagtt ggtttttggt ttgcagtgga
     3121 cactttgacc tcttttttta catcccatat taacgggggt gctttctcgc gttatgtcta
     3181 aaaaacatac gcgcaattgt tatagtggga ggggaaacgg caggtaatgt tcactatctt
     3241 gcactttcag acaagtcctt tgtaataatc tgttacatat aactgaggcg gggaattcaa
     3301 ccattccggg aaatgttatc cagcgttaaa tttttcaaaa aacgtaacgg cagatttttt
     3361 cactgcactg agagggggat gatggcttaa cggcgatatg ttctgctatt tagcgttttt
     3421 gctagtgaga tagtccagtt tctgaaaaat agccagtgta atgttttgta ggtcaatatt
     3481 tgttgcgtgt gtaaatttaa atgattttaa cctgattatt gcaatgtttt tacattgcga
     3541 cagcatcgtg atcttgatca cgaatgaata gaaaatttcg ctattaaaaa aacaattaac
     3601 ctgcattttt ggttatccgc aaacggatta cctgatgata acgctaagca atggcatcat
     3661 tcacgttaaa aagatgtttt aaaagaggat aaagaaaggt tatcaatggg gtaatcggtg
     3721 ttaccccttt tcttcagatg tcaactttct ctttgtattc acaaagatct tcaataatac
     3781 aagagccaca gcggggcttg cgggcaatgc aggtataacg cccgtgcagg atcaaccaat
     3841 ggtggcagtc gactttaaac tctgccggaa ccactttcag tagcttttct tctacctgtt
     3901 caacgttttt ccccggcgca aattgagtac gattacaaac gcggaaaatg tgcgtgtcga
     3961 cagcaatagt cggccagccg aatgcagtgt ttaatacgac gttggctgtt ttacgaccta
     4021 cgccgggcag ggcttcaagc gcagcacgat cttccggaac ctcgccatta tgctgctcca
     4081 gtaagatacg gcaggttttg atgatatttt ctgctttgct gttataaagc ccaatcgttt
     4141 tgatataggt tttaacccct tcaacgccca gttcaagcat cgctgcaggc gtattcgcca
     4201 ccgggtagag tttcgccgtc gccttattaa cactgacatc ggtcgcctga gcggaaagca
     4261 gtacggcaat cagcaattca aaaggcgaac tgaaattaag ctcggtggtg ggatgaggat
     4321 tgttctcacg caggcgagtg aggatctcca ggcgttttgc tttgttcatc agacattccc
     4381 tgtttcaccg tttggcaatg cacgttcggc agctgcttca gtacggcgct ttttcattct
     4441 ttcatcaatc aggtattttc ctgccagcat cagtcccagg ccaataaatg cacctggtgg
     4501 cagcatcgcc agcaggaaag gggagtcggt gtggaaaatc tccacgcgta atacttttgc
     4561 ccagctacct aacagcgcat ctgcaccgtc aaacaatgtg ccattgccga taatttcgcg
     4621 tagtgaaccc agcacgaaca tggcgcaggt tgcgcccata ccaattgaaa agccgtccag
     4681 tgccgaaagc gccggacctt ttttggcggc gaaggcttca gcgcggccca caacgataca
     4741 gttagtgaca atcagcggaa taaaaatccc taatgattga tacaggccaa aggcgtaggc
     4801 gttgatcagc atctgtacag cgctgaccac cgaggcgatg atcatcacgt aaatgggaat
     4861 gcggatctcg gctggcgtcc agtgacgcag cgtcgaaatg gtcaggttgg tcagcgtcag
     4921 taccagcgta gtcgcaagtc ctaaacccag agcattagtg gcagtggacg tgaccgccaa
     4981 cagaggacaa aggccgagca actggaccag cgcagagttg tttttccaca acccctgaac
     5041 aataacgtct ttaatttcgc tcacgcttta ttctccacag gcaggaagtt gagaaagttg
     5101 tgccggtaac gtctgagcgt acaatccggc gcgttttacc gcattaacca ccgcgcgggg
     5161 agtaatcgtc gcgccggtga actggtcgaa atcaccacca tctttcttca ccgcccagtg
     5221 cgcatcatcc gcaccactga tttttttacc cgcaaaatgg gtgatccagt cagaaaggcg
     5281 cagttcgatt ttatcgccaa gccctggcgt ttcgtggtgc tctgtcacgc gcgtgccaag
     5341 taccgtgccg ttaaaatcgg ctcccaccag cagctgaatc gcaccggaat agccatctgg
     5401 cgcggttgct tccagaacgg cggctaccgg tttgtcatcc tgtttggcga tgtaaacccg
     5461 atgctcacct ttacctaact ctggcgcagt taccagatag caactctgtg ccagcgcatt
     5521 gttatagcgt tcggctggca gcacctgatc aaataatgcc ttttgttgca gacttgcctg
     5581 ttcagcaatc gtcgttttgg tcatctggtt gatggccgca gttaaccctg ttgaacccgc
     5641 tgcaaatagc gctaacgtaa tgccgtgttt tcggatagtt ttcagcatgg tttacccttt
     5701 gcgatggccg tagacgcgcg gacgcgtgta gtaatcgatc agaggaaccg tgatgttcgc
     5761 cagcaggacg gcaaaagcca cgccgtcagg atagccgccg aaactgcgga tcaaccagac
     5821 taataagccc gcaagcgcgc cgaaaataag acgaccacga ttggtcgtag aagcggtaac
     5881 cgggtcagtc aaaataaaga atgcgccgag catggtcgca ccagacagca gatgaatttg
     5941 cggtgctgcc agtgtttctg gtgagaacaa ccagcccaac gttgcgcata acgccagcgt
     6001 tactaagaag ctgaggggaa tatgccagcg aatcgctttc tgccatagca accacaggcc
     6061 gccagccagc caggcgagat ttacccattg ccaaccagcg cccgccagaa taccgctgta
     6121 gatcggatat tgcataatct gttcaaccga atgaccggca cggacagagg ttttaaatgt
     6181 atccagcggt gtcgcctgac taatgccatc aatacctaag tgtagtgtgt tcatatcagc
     6241 accactggcg gtatgcccgc tgaaaataac ctgtatggcg tcgataaaac cagggatgtt
     6301 gaccgcaatt tcatgtggcg gtaaccagct ggtcatctgc accgggaagg agatcagtaa
     6361 gaccacataa ccaatcattg ccggattaaa cgggttttgc cccagaccgc catacaactg
     6421 tttagcgatg atcaccgcaa acaccgtacc cagcacgacc atccaccatg gcgcgagggg
     6481 gggaatactt accgccagca ataagcctgt tagcaatgct gagttatctt tcaacgttgc
     6541 ggctaccgac tgcttgcgta gtttgagtac gagagcttcg gctaacagag tactaaccga
     6601 tgccaacagg atctgaacga gagtacccca accaaaaaac cacagttgcg ctgcgattcc
     6661 tggcacggct gcgagcaaca ccaacagcat aatgcgcgat gtctggcgct ggttatgggt
     6721 ataaggggag ctagctattc tgaataccat ttagtcctcg tttacaacct tttgctgggc
     6781 ggcttttttg gcctgagcgc gggcaatagc cgcggcaact gccgctttgc gcggatcaac
     6841 ctgttcttct ggttctgcgt tagtctgttg ctgttccagc ttgcgcgctt tggcacgggc
     6901 aatagcggct tcgacggcgg ctttgcgcgg atcaacctgt tcttcaggta ccgcattagc
     6961 ctgttgctgt tccagcttgc gtgctttggc gcgtgcaata gccgcttcga cggcagcttt
     7021 gcgcggatca acctgttctt ctggctccgc attagcctgt tgctgttcca gtttgcgcgc
     7081 tttggctcgg gcaatagcgg cttcgatggc ggctttgcgc ggatcaacct gttcttcagg
     7141 taccgcatta gcctgttgct gttccagctt gcgcgctttg gcacgggcaa tagcggcttc
     7201 gacggcggct ttgcgcggat cgacctgttc ttctggttcc gcattagcct gttgctgttc
     7261 cagcttgcgc gctttggcgc gggcgatagc tgcttcaacg gcagttttac gtggatcagc
     7321 aacggttgct gcgtcgttag tttgctgcag ttctgcctgt ttcgctctgg cttgcgcttt
     7381 acgggcttcc cgtgctgcaa taattgcact gttatccggg cgttcgcccg ctttaatcac
     7441 aataggctgt gtagcctggg cctgtttctc tttcacccgc gccagagcgg cagcaatcgc
     7501 atctttatct ttggctgcag gttgaacggc tgcgctctta tgtcgttcaa ggcgagccgc
     7561 tttttcgcgc tccagacgag cctggcgcgc ttcgaaacgc gctttggctt ctgcggcgcg
     7621 cttttcttcc tgacgaatag ccgcaatttc agctttttcc tgacggaaat attgcaccag
     7681 gggaatattg ctcgggcaaa cccacgcgca agccccacat tcaatgcaat cagcaatgtt
     7741 atgcgtggta gctttatcgt gttgctgacc tttgctgaac cagtacaact gttgcggcaa
     7801 aagatccgca gggcaggcgt cagcacaggc gctacaccgg atgcagcttt gttcttcctg
     7861 tggttcgcca agttcattgg cagagggagc caacagacag ttggtaatct ttacgaccgg
     7921 gacatccagc catggcaagg taaagcccat tagcgggcca cccataatca ccatttgatc
     7981 ggcagagggg cagaatcggg catcattcaa taaatgacgc actggcgtcc ccagccgtgc
     8041 ccagacgttg cccgggcgag cgattgcttc gccagtcagg gttacaacac gctcggtaat
     8101 cggctcgcca tcaataacgg cacgtttcac tgcataagca gtgccgacgt tttgcattaa
     8161 tacgccgata tcggatgaac gcccgccatg tggaacctgc ttcccggtca gaatgtaggt
     8221 taattgttta gcaccgccag aaggatattt ggttggaatc acccgcagag aaatatcgtt
     8281 agagtccgcc agcaccgcgc gcagcatgga aatcgcctgc ggtttgttat cttcaatgcc
     8341 gataagaatt tcgcgtggct gcagaatatg cgcaagaatg cgaataccct ctacgacctg
     8401 agccgcgcaa tcctgcatca aacggtcatc ggcggtaatg tacggctcgc actcagccgc
     8461 gttgataatc aacgtttcaa tcttatctcc gccaccctgc aatttaacgc ctgtcgggaa
     8521 tcctgcaccg cccagcccgg caacaccaaa ctgatgtatg cgctcgatta actcttcgcg
     8581 actgcgagtg cgataatcgg cccagccgtc gcgcgggatc cagcagtctt caccatcggc
     8641 atcaataatc acgcttaatt cagctaaagc tgaaggatga gccgtagagt ggggcgcaat
     8701 agccgtaacg gtacccgagg tgggcgcgtg aacaggcagc attttgtcgc gaccacgggt
     8761 aagcggctgg ccgcgcaata ctttatcgcc gacgctaacg cacaactcac cttcagcgcc
     8821 aatatgctgt ttcagtggaa taacaaaacg ctgcgccagt ggtacctggc gcaggggtgt
     8881 accgttggac tgggttttca tctccggtgg atggatgccg ccgttgaaat cccagatttt
     8941 attttttctg aatgcagaga ataacttaag catggtgttc cacgggaatg atacgcacgg
     9001 gaatggtgtt cagatcccat ttccaggagt caggtgtttc tgcgaccggt tgcaacgaga
     9061 tgcagtgcgt cgggcacgga tcaacacata aattgcagcc cgtacagaga tcactcatta
     9121 ccgtatgcat ggcacgggta gcgccaacga tggcgtctac cggacaagcc tgaatacatt
     9181 tagtgcagcc aatacagtta ttttcatcaa taaccgccac catccgcgca ggcgttagct
     9241 cttgcgcttc gccatccagc ggctgcggct cgacattaag caactcggca atttttagca
     9301 tcacagcttc gccacctggg gcgcaacggt tgattttttc accgttacag ctgatggctt
     9361 ccgcgtaggg gcgacagccg ggataaccgc actgagcaca ctggctctgc ggtaagattt
     9421 tgtcaatttt ctcaacgacc ggatcgtctt ccaccgcaaa acggcgggag gcataaccca
     9481 gaatggcgcc aaacgccagg cccagcaggc tcacggcggc aacggcaatc cagatagcat
     9541 tcattacaac ttcaccaaac cactaaagcc cataaaggcc agagacataa gacctgcggt
     9601 aattaacgca atggcattac cgcgaaaagg tgccgggaca tcagccacag caaggcgttc
     9661 gcggatggcg gcgaagagca ccatcaccag cgagaaaccg acagcggcgg aaaaaccgta
     9721 cagcgccgac tgcaagaaat tgtgcccgag attgatattc agcaacgcca cgccgagcac
     9781 tgcacagttg gtggtgataa gcggcaaaaa aatccccagc agacggtaaa gcaccgggct
     9841 ggttttgcgc accaccatct cggtgaactg cacgaccaca gcaatcacca gaataaatgc
     9901 cagggtgcgc aggtaaatca gattaagtgg gatcaaaatc cacgtatcga taagccaggc
     9961 gcaaatagac gccagcgtca tcacaaacgt tgttgccagc cccatgccca tcgcggtttc
    10021 cagttttttg gaaaccccca taaacggaca gagaccgaga aacttgacca gtacaaagtt
    10081 attgaccagt acagttccga caaacagtaa caggtagtca gtcatttttc ggcctgaaat
    10141 aaaaaagccg cctattatcc gttaatccag agcaggcgac aacaggttaa ctgtaaggtt
    10201 attacggatt cacaaatgtc gcttttaccc gcgacgagcg tttgaaatag gagacgatca
    10261 atgcggttgc caacaaagta aacagcaact ggcgaacggc tatgccatct tccacgggtg
    10321 aaaaagcgaa tgcttttact gccagcaata cggaaataag cagccagata atatagtgtt
    10381 taggaacaca acgccgacgt ttaaagaaag cgatggtcaa ccacagtgtg taataccaca
    10441 tggcgatagc ggtaataaaa gaaacgcccc ataagatttg tgtcgtcagt gcttgtccgc
    10501 cgagcgtttg aaatgtttgc ggagaagata acgcagcggt atacagcaac aacgccagcg
    10561 tcgtactcaa cagagcgact aaaagccagg ccaacgggcc aagcaaccag cctccaatac
    10621 gttgtggcgt tgtggtggtc ataggttctc cagaatagcg aagcaaacag gcaaatctaa
    10681 ttttaggggc gttattataa ggcttttata accgatcgct actttcttta ttggacatag
    10741 tgccagacgg acttcggtac ctggccgagg tcaaacaaac gcccgccaga aaccagctct
    10801 gcgcgacggt gatcggcagc acgatacata ttgatcagtt cctgatcgtc cgtcagggtg
    10861 taattaagat ggtcgtagag tttttccaga ctttcgagtg aactgatttt gcgaaatttt
    10921 aataagtagt cctgaacagt cataaaaggt ccataaaata attaatacca aaggggtagg
    10981 tattattagt gatgataaaa tttcaccaaa agtgaacgct tgtgttatta caataataag
    11041 aatgcgctga tggcaaatat tcagggatga aaaactgctc tgaaaagagt aacgcgcttt
    11101 actatccctg acaatcacca acaacatcga acaagataat aaattcctgg tttaatatcc
    11161 gacaagtgaa aacatgcacc cggacgggca gcatggcgct ctacaagcgc agagcttact
    11221 tgtgttgtac cgaagcactc tgttcaggtg gctgatagtt gtcaatgtga ctcgccacgc
    11281 caagaagaat gactgaaacg acaagaacga tccaacctgt taattcaata agacgattca
    11341 ttacagccca catctctctt gattgatcca ttaacttcag ggggtaaatg ttacttagca
    11401 ataatagctc cagcaagatt tttactgagg tttttgcgat atttagcttt tgtcgttgga
    11461 aaattcgcta tttttttgac ttaagttaaa caacatccct tattgctggc aggttattaa
    11521 actgttgagc gtgggtaaag gatagtgtca aatagcaatc atacttcaat gagaggcaat
    11581 gacatgagcg acaacatccg tgttgggttg attgggtatg gttatgcgag caaaaccttc
    11641 catgcgcccc tgattgcggg cacgcccggg ctggaactgg cggtaatctc cagcagtgat
    11701 gaaacaaaag taaaagccga ctggccaacg gttacggttg tctctgagcc gaagcatctg
    11761 tttaacgatc ccaacataga cctgattgtc attcctacac ccaacgatac ccatttcccg
    11821 ttagccaaag cggcgcttga ggcgggtaaa catgtggtcg ttgataaacc ctttaccgtg
    11881 acactgtcac aagcgcgaga gctggatgcg ctggcaaaaa gcctggggcg tgtgctgtct
    11941 gtattccata accgtcgttg ggatagcgat ttcttgaagc taaaaggttt gctcgcggaa
    12001 ggcgtgctgg gtgaagttgc ttactttgag tctcattttg accgcttccg tccgcaggtg
    12061 cgcgatcgtt ggcgtgaaca gggcggccca ggcagcggta tctggtacga tttagcaccg
    12121 catcttcttg atcaggccat tacgctattt ggtttaccgg tcagcatgac ggtagatttg
    12181 gcacagttac ggcccggagc gcagtcgacc gattatttcc acgccatctt gtcctatcca
    12241 cagcggcgag tcattttaca cggtaccatg ctggcagccg ctgagtcagc acggtatatc
    12301 gtgcatggat cccgaggcag ttatgtgaaa tatggcctcg atccacagga agaacgtctg
    12361 aaaaatggcg agcgtctgcc gcaggaagac tggggctacg atatgcgtga tggcgtactt
    12421 acccgcgtgg aaggtgagga acgtgtcgaa gaaacgctgt tgacggtacc tgggaattat
    12481 ccggcttact atgcggctat tcgtgatgcg ttaaatggcg atggtgaaaa tccggttccg
    12541 gcaagccagg caatccaggt aatggagttg attgagctgg gcatcgaatc cgccaaacat
    12601 cgcgcgactt tgtgccttgc atgaaaaatg gatggtgcaa tttgcaccat ccattttgtt
    12661 acttcgcggc gactttttct cgcagtgcgc gtttttcctc agcgctgagg aaagccattt
    12721 ccagaccatt aatctgtgcc tggcggattt gctcgcggga taacccagca gctggcgcgg
    12781 caacggtata ttcgtgaatg atatccactc cctgtacgcc gggatcgtca gtgttaatgc
    12841 cggcacgaat gccatgctca aggaacgttt tcagcggatg tgcagccagc tctgctacgg
    12901 tgctggtctg aatattggag gtcagacagg attcaatacc aatttgttgc tcggcgagaa
    12961 aatccatcag cgcccgatct tcaatggctt ttacgccatg tccaatacgc tccgcaccca
    13021 gttcacgaat cgcctgccag atgctttccg gcccggcagc ttcgcctgca tggacggtaa
    13081 tatgccagcc cgcatcacgc gcaaggttga agtgagaaag gaacagactt cccgggaaac
    13141 caagttcatc accggctaaa tcaagtgcgg taatctggtc acggtgggct aaaaaggcct
    13201 ccagctcttg ctgacaggcg gcttcgccga aggttcggct cataatgccg ataagcttcg
    13261 cctgcacacc aaaagtgcgg caaccttcac gtacgccatc gatcaccgct tcgacaacac
    13321 ccgctacagg cagcttatgt gccattgcca tgtagcctgg tgaaaaacgc agctcgacat
    13381 agtgcaggcc gttacgggct gcatcttcaa tgttttcaaa tgccacgcgg cggcaggcat
    13441 caagagaggc gagaacttta acgccccagt caagtttggt cagaaagctc accagatcgg
    13501 gttcgttggc aatgacctga acgtggggaa tcagtgtttc cagggattgt gcaggaagcg
    13561 agatattata ctggcggcca agttcaagaa tggtctgggg acgaatgttg ccatcaaggt
    13621 ggcgatggat atcagttaat ggcagggtgg tatcaatcat ggtcgcactc tttttctgga
    13681 tataaaagtg cgcaccatta taaaaacaaa gcagggtaaa aatccacgat tgcgcaacga
    13741 ttttttacgt tgcgcaattg gggttaacga acagcgcgga tggcgttaat taatccagcc
    13801 acaccttttt ccagtttcga acgtgggcag ccggcattga gacggacaaa accacgacct
    13861 tcttcaccgt aggtataccc cggcatgatc gcgacttttt cttgttcgat aagtgctttt
    13921 tgcaacgcgt tgtcgtcaat attcaacgga cgtaaatcaa gccatgccag ataagtggat
    13981 tgtgggatct gccagttgag ttcaggaaac gcggcgttca ttttatctgc gatatacgtc
    14041 aggttatctt tcagatagat gcgtaaggca tccagccacg gcgcgccttg ctgataggcg
    14101 gcgatatggg cagttaacgc cagtaccgaa ggggaagaaa gcccatcacg gcctttcagt
    14161 gccgataaat aggcatcgcg gctactgcta ttttctataa tcccgtaagc accggtcagg
    14221 gcgggaatat tgaaactttt cgagcccgac gttagcaacg cccagtctcc gcgagccaca
    14281 ttactccagg gaatatgcgg ctgctcgccc caaaccatat ccatatggat ttcatcggaa
    14341 ataacccgca caccatgacg ctcgcacagg tcagccatga tctccagctc atcgcacgtc
    14401 cacactttcc cggtaggatt ctgtgggcta cacaggagca taattttaca ttctggtttc
    14461 gccaacacgg cttccaactt gcccatatcg caaaaccaac catcagcctg cttctctaaa
    14521 gcaacgggca ttactgtgcg ctggttacct tcaatggcct tgtaaaatgc gtcataggcg
    14581 ggtgtgtgga tcaccacgcc ttcacctgtt tcagaccact gacgaatcag ttctgaaacc
    14641 atatagatga cagaagggcc atacaccacc gtctgagaat cgatggcggt gtaatgctgg
    14701 gtggaaaacc agtgggcaat agccgcgaga aactcatcgt ttttccagcg gctgtagcca
    14761 aatacgccgt gcatcaggcg ctgattcagc gcctctataa tgcagggggc agtggcaaaa
    14821 tccatgtctg aaatcgtgaa cggtaacagg tcagcagtgc cgaaacggtc agcgacataa
    14881 tcccactgtg tacaccatgt gccatgacga tccacgacct ttgaaaaatc gaacatatct
    14941 tatccttatg cctggacagt atgcatcaga ccggctattt catcttttac tgactgaact
    15001 tgtggcccga taacaacctg caggttatgt tgattaagtt gtactacgcc aattgcccga
    15061 ttgtccttca gtgcctgcac attaacaagc gacatatctt tcacagacaa acgcagacgg
    15121 gtaatgcagt tatcgaggct gacaatattg tcggcaccgc ctaatgcttc gaggattgca
    15181 ggaacgttgt aacctgattt acccggcgca gcggcaacgg ctttttcgat tgagctggca
    15241 acttcgctat cgcgccccgg ggttttgaga ttgaagcggg tgatagcgaa acggaagatg
    15301 gcgtagtaaa cgacaaacca gattgccgcc accactggca ccatgtacca cttggttgac
    15361 agaccatgca aaataccgaa caccacgaag tcgatgatat tgccgtcggt attaccgatg
    15421 gtgacgccga gcacagacat gacggtgaag ccgaggccgg ttaacagcgc gtggatgaca
    15481 tacagaactg gcgctacgaa caggaacagg aattccagcg gttcggtagt gccgccaacg
    15541 acgcaggcga tcaggccaga aatcagcaga cctttaattt tatggcgatt ttccgggcgc
    15601 gcgcagtgat acatagctaa cgctgcagct ggcagaccgc cgagaaacgc aggcatttta
    15661 ccttgcgaaa ggaaacgcgt ggcgctttca gaaaaaccgt gagtggtcgg gcaactcaat
    15721 tgcgcttgga agatggtcag tgcgccgctg acggtttgac cgcagacttc ctgcgtgccg
    15781 cctgcgtcgg taaagcgaat taatgccacc agaatgtgat gcagaccaaa cggcaacagc
    15841 agacgttcac cggtaccaaa cagcatcggt ccgaaatcac ccgcgctgtt tatcatatgg
    15901 cccaagccgc taatacccat ggcgaaaatc ggccagacta atggaatcac caggccgaca
    15961 aggcccatca ccagcgagga gataattggt acgaagcgcg taccgccgaa gaatgccagc
    16021 gcatccggca ggcggatatt atggaaacgc tcatgcagca tccagacgat aataccggcg
    16081 atcaccgcac cgaggatccc ggtatcgatc gactggatcc caagaatgct ctggatgtta
    16141 ttggctttca gaaccgcggc atccgtggtt ggcagaatgc ctttattggt caaccagaag
    16201 tttaccgcga ggttcattac cgcataaccg acgaagccag cgaatgccgc tacgccttta
    16261 ttttcgcgtg ccaggcccag cgggatggcg atacagaaca tgacaggcag gaaactaaaa
    16321 gcaaacgagc caatcttact catccaggta aagatagcct gcaacacggg gttgcccagg
    16381 accgggatca gggttatgac atcatggctg ctaagagaac taccaatgcc gagcataatg
    16441 ccgcagaacg acaataatgc cacgggtaac atgaaggttt tgcctaactg ctggaagaac
    16501 tcccacagcg tgactttcgg tgctgttttc gccgtcataa aacgactcct cgtagagaac
    16561 aatctggatt cagtaaattg cgcgagaaga taaaacgttt tatcaaattt tagtgaggca
    16621 taaatcacat tacgcaacga taatagcggg tataagataa ataaaaggta aaacgtttta
    16681 tctgtcacat aatcagggag taggtcatct gcatggctac cgccaaaaaa ataaccattc
    16741 atgatgttgc gctggctgcg ggcgtgtcgg taagtaccgt ttcgctggtg cttagtggca
    16801 aagggcgaat ctctaccgcc acaggagaac gcgttaacgc cgccattgaa gagctgggat
    16861 ttgtgcgcaa tcgccaggcg tcggcgctgc gcggcgggca aagcggcgtc attggtttga
    16921 tcgtccgtga tttatctgcg ccgttttacg ccgaattgac ggccggattg acggaagctc
    16981 tggaagcgca gggacggatg gtttttttgc ttcacggcgg taaagacggc gagcagctgg
    17041 cacagcggtt ttcactgtta ctgaatcagg gggtcgatgg tgtggtaatt gccggggctg
    17101 caggaagcag cgatgacctg cgacggatgg cagaagaaaa agctatcccg gtgattttcg
    17161 cttcccgtgc cagttatctt gatgatgttg atacggttcg cccggacaac atgcaggctg
    17221 cacagttgtt gacggagcat ctcattcgca atgggcatca gcggatcgcc tggctgggag
    17281 ggcaaagttc ctcattaacc cgggcagaac gggtgggagg ctattgtgca actctactaa
    17341 aatttggcct gccgtttcac agcgattggg tgctggagtg cacatccagc cagaagcaag
    17401 ctgcggaagc tatcacggcg cttttacgtc ataacccgac catcagtgct gtggtttgct
    17461 ataacgaaac tattgcgatg ggggcatggt ttggtttgct gaaagcaggg cggcaaagcg
    17521 gggaaagcgg agtcgatcgt tactttgagc aacaagtttc gctggcggca tttaccgatg
    17581 cgacaccaac cacacttgat gatatacccg ttacctgggc cagcacgcct gcgcgggaac
    17641 ttggtaccac acttgcggat cgcatgatgc aaaaaatcac ccatgaagag acgcattcac
    17701 gcaatcttat tattcccgcc cggctcattg cagcgaaata atcctctctt tatctgctat
    17761 acctggtagt gtcctttcct caaggttaat gataaaaaat gtggcacaca ggc
//
LOCUS       DAJVUN010000074        17730 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.074, whole genome shotgun sequence.
ACCESSION   DAJVUN010000074 DAJVUN010000000
VERSION     DAJVUN010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17730
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.074"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(485..1618)
                     /gene="thiH"
                     /locus_tag="OQQ76_002143"
     CDS             complement(485..1618)
                     /gene="thiH"
                     /locus_tag="OQQ76_002143"
                     /EC_number="4.1.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HCS1968638.1"
                     /translation="MKTFSDRWRQLDWDDIRLRINGKTAVDVERALNASQFTRDDMMA
                     LLSPAASGYLEQLAQRAQRLTRQRFGNAVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDEADIARESAAIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQ
                     PLAKTEYAELKQLGLDGVMVYQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDNWRVDCYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMD
                     ERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGGYADNHP
                     ELEQFSPHDDRRPEAVAAALAAQGLQPVWKDWDSYLGRASQRL"
     gene            complement(1615..2385)
                     /gene="thiG"
                     /locus_tag="OQQ76_002144"
     CDS             complement(1615..2385)
                     /gene="thiG"
                     /locus_tag="OQQ76_002144"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418418.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HCS1968639.1"
                     /translation="MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKR
                     VDLRQHNDAILEPLIAAGVTLLPNTSGAKTAEEAIFAAHLAREALGTNWLKLEIHPDA
                     RWLLPDPIETLKAAEMLVQQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG
                     LETRAMLEIIIQQATVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVNMAK
                     AFRLAVEAGLLARQSGPGSRSHFAHATSPLTGFLEASA"
     gene            complement(2387..2587)
                     /gene="thiS"
                     /locus_tag="OQQ76_002145"
     CDS             complement(2387..2587)
                     /gene="thiS"
                     /locus_tag="OQQ76_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HCS1968640.1"
                     /translation="MQILFNDQPMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPRE
                     QWTQHIVQDGDQILLFQVIAGG"
     gene            complement(2571..3326)
                     /gene="thiF"
                     /locus_tag="OQQ76_002146"
                     /pseudo
     CDS             complement(2571..3326)
                     /gene="thiF"
                     /locus_tag="OQQ76_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709786.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole biosynthesis adenylyltransferase ThiF"
     gene            complement(3319..3954)
                     /gene="thiE"
                     /locus_tag="OQQ76_002147"
     CDS             complement(3319..3954)
                     /gene="thiE"
                     /locus_tag="OQQ76_002147"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709787.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HCS1968641.1"
                     /translation="MYQPDFPPVPFRLGLYPVVDSVQWIERLLDAGVRTLQLRIKDRR
                     DEEVEADVVAAIALGRRYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAG
                     LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYP
                     TVAIGGISLARAPAVIATGVGSIAVVSAITQAADWRLATAQLLEIAGVGDE"
     gene            complement(3954..5849)
                     /gene="thiC"
                     /locus_tag="OQQ76_002148"
     CDS             complement(3954..5849)
                     /gene="thiC"
                     /locus_tag="OQQ76_002148"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HCS1968642.1"
                     /translation="MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYLTGTHSGVRV
                     PMREIQLSPTLIGGSKEQPQFEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWID
                     ARGDTEELTVRSSDYTKARLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMSFGARLPENITAEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSMRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFREICEICAAYDVSLSL
                     GDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE
                     LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGASMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAATQTIEMGMADMSENFRARGGEI
                     YLRKEEA"
     regulatory      complement(5930..6030)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(6083..6559)
                     /gene="rsd"
                     /locus_tag="OQQ76_002149"
     CDS             complement(6083..6559)
                     /gene="rsd"
                     /locus_tag="OQQ76_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HCS1968643.1"
                     /translation="MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQ
                     IMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA"
     gene            6654..7427
                     /gene="nudC"
                     /locus_tag="OQQ76_002150"
     CDS             6654..7427
                     /gene="nudC"
                     /locus_tag="OQQ76_002150"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HCS1968644.1"
                     /translation="MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRAL
                     QIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVVLFQLAGRGVQLAEFYRSHKYCGYCG
                     HEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE"
     gene            7467..8531
                     /gene="hemE"
                     /locus_tag="OQQ76_002151"
     CDS             7467..8531
                     /gene="hemE"
                     /locus_tag="OQQ76_002151"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HCS1968645.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSP
                     VTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP
                     PEHAGVFVEAVHRLSEQYHR"
     gene            8541..9212
                     /gene="nfi"
                     /locus_tag="OQQ76_002152"
     CDS             8541..9212
                     /gene="nfi"
                     /locus_tag="OQQ76_002152"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HCS1968646.1"
                     /translation="MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFV
                     DGHGISHPRRLGVASHFGLMVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRY
                     TANQP"
     gene            9255..9845
                     /locus_tag="OQQ76_002153"
     CDS             9255..9845
                     /locus_tag="OQQ76_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="HCS1968647.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVALSE
                     LVHSRLSGETLEHAVKVSKTSITTVAMLEMTQVGREMSDEELKENPAVEQEWDIQWEI
                     FRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ"
     gene            10032..10304
                     /gene="hupA"
                     /locus_tag="OQQ76_002154"
     CDS             10032..10304
                     /gene="hupA"
                     /locus_tag="OQQ76_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-alpha"
                     /protein_id="HCS1968648.1"
                     /translation="MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            10317..11012
                     /locus_tag="OQQ76_002155"
     CDS             10317..11012
                     /locus_tag="OQQ76_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="HCS1968649.1"
                     /translation="MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASG
                     FAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPV
                     NIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQG
                     RWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVAN
                     SDFCRWQPNEKTF"
     gene            complement(11014..11439)
                     /gene="zraP"
                     /locus_tag="OQQ76_002156"
     CDS             complement(11014..11439)
                     /gene="zraP"
                     /locus_tag="OQQ76_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="HCS1968650.1"
                     /translation="MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQ
                     QTAWQKIHNDFYAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLD
                     ELRVKRDIAMAEAGIPRGAGMGMGYGGCGGGGHMGMGHW"
     gene            11677..13053
                     /gene="zraS"
                     /locus_tag="OQQ76_002157"
     CDS             11677..13053
                     /gene="zraS"
                     /locus_tag="OQQ76_002157"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="HCS1968651.1"
                     /translation="MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAA
                     ARQTLLEKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQGTI
                     VMHSNSGMVGKQIYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFGAGMHR
                     MRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFALATVLLASVLSFFWYRRY
                     LRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL
                     AQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRF
                     TANDTLPEIQADPDRLTQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKG
                     IAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVN
                     ITRKDPQG"
     gene            13050..14375
                     /gene="zraR"
                     /locus_tag="OQQ76_002158"
     CDS             13050..14375
                     /gene="zraR"
                     /locus_tag="OQQ76_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
                     /protein_id="HCS1968652.1"
                     /translation="MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQ
                     VREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALD
                     YLIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAP
                     SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAF
                     TGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR
                     LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN
                     RKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIP
                     LGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR"
     gene            complement(14372..15661)
                     /gene="purD"
                     /locus_tag="OQQ76_002159"
     CDS             complement(14372..15661)
                     /gene="purD"
                     /locus_tag="OQQ76_002159"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HCS1968653.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLE
                     GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGV
                     VMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGH
                     TVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN"
     gene            complement(15673..17262)
                     /gene="purH"
                     /locus_tag="OQQ76_002160"
     CDS             complement(15673..17262)
                     /gene="purH"
                     /locus_tag="OQQ76_002160"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HCS1968654.1"
                     /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL
                     AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVV
                     VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVK
                     EFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRD
                     LGMVGAEELRVVTQRQPTEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEV
                     IAAADEHGIAMLFTDMRHFRH"
BASE COUNT         4009 a         4753 c         4869 g         4099 t
ORIGIN      
        1 ggtaaatcag tgaaattttt caccattgcc tacaacttat tgagaaataa gcagcttcct
       61 cagccctcaa aataacaaaa cccaccttaa ggtgggtttc gccagagaat tatctctggt
      121 attcagaacg ccattaccgg actttgcctt gaccttgcga taatcgcagg ttgcgggatg
      181 tctgaatttc ttcagtctgc tgcatcctgg aagatgagaa catgtgttct tattttcgtc
      241 tctatcatag ttgagtattt actctcttac aatcagatct ctttcattgc tcaacaggcg
      301 atggcttcag actttgcatt acggaatttt taagaaaggc agggcgaaac gaggaagaag
      361 cttttcgccc tggacaacat tcctgctgac ggcactacca taaaaaaaca caacgctttc
      421 aacaaccttg cgtttttcat cttccgtagc ggctcggaat aaatttacgt tcttacattc
      481 cgtctcatag tctttgcgag gcccgtccca gatagctgtc ccagtctttc cataccggct
      541 gcaaaccctg agcggctaac gcggcagcaa ccgcttccgg tctgcgatcg tcgtgcggtg
      601 agaactgttc caactcgggg tgattatcgg catagccacc tggctgcgtt ttcgagaagg
      661 cgctgacgtt attgatcgcc agcggaataa cgcgatcgcg aaaccacggt gattcccgcg
      721 tggagagtga cagttcaatc tccggtgcaa gcagtcggaa ggcgcagatg gtttgcacta
      781 actggcgttc atccataatc gacgcaggct caatgccgcc agtacacggg cgcaggcgcg
      841 gaaaagagac agagtaacgg ctttgccagt aatgctgttg cagccatagc aaatgttcgg
      901 caaccatata gcagtcaacg cgccagttgt cggaaaggcc aattagcgcg ccgaggccta
      961 tcttatcaat ccccgcacgc cccagccgat ccggcgtttc cagccgccag aagaagtcct
     1021 gttttttgcc tttcagatga tggcgggcat aagtcgcctc gtgatatgtc tcctgataaa
     1081 ccatcacgcc atccagacca agctgcttta actcggcgta ttccgtcttc gccagcggtt
     1141 gcacttccat ttgtagtgaa gagaactgtt cacgcagggc ggggagatga cgacgaaagt
     1201 aatccatccc cactttcgcc tgatgttcac cagtgactaa tagcagatgt tcaaagccca
     1261 tctcccgtat agcggcgctt tccctggcaa tatccgcttc atccagcgtt ttgcgcttga
     1321 tgcgattact catggaaaat ccgcagtacg tgcagtcgtt agcgcaaaga ttggaaagat
     1381 aaagcgggac gtagaaacta actgcgttgc caaatcgctg acgggtcaga cgctgcgccc
     1441 gttgggccag ttgttccaga tagccactgg cggctggcga taacagcgcc atcatatcgt
     1501 cgcgggtgaa ttgcgaggca tttagcgccc gctctacgtc aacagccgtt ttgccgttga
     1561 tacgcaggcg gatgtcatcc cagtccagtt gtcgccagcg atcgctgaag gttttcatgc
     1621 cgatgcctcc agaaatccag tcagcgggct ggtggcatga gcaaaatgac tgcggctgcc
     1681 cggtccggac tgacgtgcca gcaggcctgc ttctaccgcc agacgaaatg ccttcgccat
     1741 gttgacggga tcgtccgcta cggcaatcgc cgtattcact aacaccgcgt cggcccccat
     1801 ttccagggcc tgcgcggcat ggctgggaac gccgatgcca gcatcgacaa ccaccggaac
     1861 tgtggcctgc tggataataa tctccagcat ggcacgggtt tccagtccct gattcgagcc
     1921 aatcggcgcg ccgagcggca tcaccgctgc acagccgact tcttccagac gtttacacaa
     1981 taccggatcg gccccgcagt aaggcagcac gacaaatccc tgttgtacca gcatttcggc
     2041 ggctttcaga gtttcgatgg gatcgggcaa cagccagcgg gcgtcagggt gaatctctaa
     2101 ttttaaccag tttgtgccta acgcttcacg tgccagatgg gcggcgaaaa tggcttcttc
     2161 cgctgttttc gccccggaag tatttggcag cagggtcaca cccgccgcga taagcggttc
     2221 gaggatagcg tcgttgtgct ggcgcaagtc gacacgtttc atcgccagtg tcaccagctg
     2281 gctgccggaa gcgcggatcg cctccaccat cagttgtgaa gaagcgaatt tccctgtgcc
     2341 ggtaaacaga tgtgaatcaa acgttttgtc cgcaatacgt aacatctcaa ccccctgcaa
     2401 taacctgaaa aagcaggatc tggtcgccat cctgcacgat atgttgcgtc cactgctcac
     2461 gcgggacgat ttgctgatta atcgccagag ccgcgcccgc ttgtcgttgg tcgagttgct
     2521 ccagtagttc gtgaacagtt tgcccggcgg cgcactgcat cggttgatcg ttaaacagga
     2581 tctgcattgc ttcctccgca taccgggcaa ccactggcgc ggcgcaacgc caggctgcgc
     2641 cactggctcg atttaccgtc gaacagtcgg agttctcccg caggtgtctc tataccgctt
     2701 aataacttaa tggcttccag tgcctgcaaa gtgcccataa ccccgaccac cgggccaacc
     2761 acgcccaccg tgcggcagtt gcgttctggc tcctggttat ctggccacag gcagcggtaa
     2821 cacccctgct cccagggcgg cgtcagtacc atcaactgac cgccaaatcc gaccgcgctg
     2881 gcggtgataa gcggcgtgtt gagtaccacg caggcggcat taatctcctg gcgagtcgcc
     2941 atattgtcgg tacagtcgag caccacatcg gcccgtgcaa ccgcatcttt taacgcctca
     3001 cccgttaacc gttgttgtaa tgctgtcagt tgaatgtcgg gattcaactg tgtcagtcgc
     3061 tgttggctga cctgcgattt cgggctgttg atatcttcag tggtaaagag aatttgtcgt
     3121 tacagattgc ttaaatgcac atcgtcgtca tctgccagta ccagcgtccc gacgccagcg
     3181 cccgccaggt atagcgcagc aggtgtaccc agcccgccaa gaccgataat cagcacctgg
     3241 ctgtcgagca gtttttgctg cccgtcaaga gcgatatcgt cgagcaggat ttggcggcta
     3301 taacgcataa aatcacggtc attcatcgcc aactcctgca atttccagca actgtgccgt
     3361 tgccaaacgc cagtctgcgg cttgagtaat ggcgctgacg acggcgatac tgccgacacc
     3421 cgttgctatc accgcaggcg cgcgtgccag actgataccg ccaatcgcca cggtgggata
     3481 atccgccagt cgctcaacat gccgtgccag ctgttccagc ccctgcggtg cagaaggcat
     3541 ctgtttggtt tgcgtcggga acacatgtcc cagcgcgata taagaggggc gtgctgccag
     3601 cgcgacgtcg atttccatat cgtcatgtgt cgaaacaccc agccgcaggc ctgccgcgcg
     3661 gatggcattg agatcggtgg cttgcaaatc ttcctgcccc aaatggacgc catacgcctg
     3721 atgcttgatc gcgagccgcc agtaatcgtt gataaacaat cgcgcgttat agcggcggcc
     3781 cagcgcaatt gccgccacga catcggcttc cacctcttca tcgcgccgat ctttgatgcg
     3841 tagctggaga gtacgtacgc ctgcatccaa cagacgttcg atccactgta cgctgtccac
     3901 cactgggtac agtcctaaac gaaaaggtac aggaggaaaa tcaggctgat acatcacgct
     3961 tcctccttac gcaggtagat ttctccgcct ctggcacgga agttctccga catatccgcc
     4021 attcccattt caatagtttg cgtggcggcg taatcacgca cttcctggct gattttcatc
     4081 gagcagaatt tcggcccaca catggagcaa aaatgggcga ctttacctga ctcttgcggc
     4141 agggtttcat cgtgataagc gcgggcggta aacgggtcga gggccagatt aaactggtct
     4201 tcccagcgaa attcgaagcg ggctttcgac atggcgttat cgcgaatttg cgcgcccgga
     4261 tgccctttcg ccaggtcagc ggcgtgggcg gcaatcttat aggtgataag cccctgctta
     4321 acatcttctt tattaggcag acccagatgc tcttttggcg ttacgtaaca gagcatcgcg
     4381 cagccaaacc agccaatcat cgacgcacca atccccgacg tgaagtggtc atagcccggc
     4441 gcaatatcgg tagttagcgg ccccagagtg taaaacggcg cttcgtggca gtgctctaac
     4501 tcctcggtca tattgcggcg gatcatctgc atcggcacgt ggcctgggcc ttcaatcatc
     4561 acctgcacgt catattccca ggcaattttg gtcagttcgc ccagcgtatg cagctcggca
     4621 aactgcgctt catcgttggc gtcctgaata gaaccggggc gcagaccgtc gcccagcgac
     4681 agcgaaacgt cataagcggc acagatttca caaatttcgc ggaagtgttg atagaggaaa
     4741 ttttcctgat gatgggagag gcaccatttc gccataatcg aaccgccgcg agagacgata
     4801 ccggtcaggc gtttcgcggt catcggcaca tagcgcaaca gtacgcccgc atggatagtg
     4861 aagtaatcca caccttgctc ggcctgttcc agcagcgtgt cgcggaacgc ttcccaggta
     4921 agatcttcgg cgatcccgtt aaccttctcc agcgcctggt agatcggcac tgtaccgatc
     4981 ggcaccggac tgttacgcaa aatccactcg cgggtttcgt gaatatagcg accggtggag
     5041 agatccatca ccgtatccgc tccccagcgc atggaccata ccagcttttc cacttcttct
     5101 tcgatggaag aggtgaccgc cgagttgccg atattggcgt taacttttac caggaagtta
     5161 cggccaataa tcatcggctc cgattccgga tgattaatgt tggccgggat aatcgcacgt
     5221 ccggcagcaa cttcatcacg gacaaattcc gcagtgatat tttccggcag acgtgcgcca
     5281 aagctcattc ccggatgctg gtggcgtaaa acttcgctac gtatgcgctc gcggcccata
     5341 ttctcgcgga tggcgatgaa ttccatttcc ggtgtgatga tgccctggcg ggcgtagtgc
     5401 agttgggtga cacggcgtcc tgctttggcg cgttttggtg ttagtacgcc gctaaaacgc
     5461 agttcgtcga ggccatcatc tgccagccgc gctttagtgt aatcggaact gcgcacggta
     5521 agttcttcgg tatcgccgcg cgcatcgatc cacggctggc gtagttttgc cagcccttgc
     5581 tgcacgttaa tggcgatctg cggatcgcca tatgggccgg aggtgtcgta gaccggaatc
     5641 gcttcgtttt cttcaaactg cggctgttct ttgctgccgc cgattagcgt cgggctaagc
     5701 tggatctcac gcatcggcac gcgaacgcca gagtgtgtgc cagtgaggta aatgcgtttt
     5761 gagttgggaa aggcggtgcc ttccagggtg tcgataaaat gttgggcccg ggcgcgttgt
     5821 tcgcggcggg tcagttttgt tgcagacata gctcattcca aaaagttaag gacgtggctt
     5881 gtcagacgac ggatgaagca agagacgatc gccgcaaagg cgatgcgata gcagattaac
     5941 tcttgttccc ttcgcaggta ttagcctgat caggttccgc ggatcccgaa taaacggtct
     6001 cagccagtta aggcactccg acaagaaatt agcccccaca aacggggcgt tgaatgtaaa
     6061 ttacgcgtta acagcgcaga actcaagcag gatgtttgac gcgggcggcg tcaagcacca
     6121 gcagaatcag cttatcttcc agcacaaagc gcgcttccag cgcctcgccg atgtcagata
     6181 aaacctgttg aaactcaagg taattatcat gatcgatggc ggtttccagg ctggaatcgt
     6241 agtaatccat aatctgttgg gtattggctt cgagttgcgg ccaaatcttc gcggcgcgcg
     6301 cgagttgccc gttgccttcc agcttatgaa gaatgcgctc ataaatactg aaatgtccgg
     6361 cagacaagta atcgaccagg ctctgacaaa aatcatcaag ggctttttcg tttagcctca
     6421 tgtacgattc tttgccaggc ttaatgccaa ccagattgta gtaagccacg agcagatgct
     6481 tacgtacatg tagccagcga tcaaccagtt tgttacttcc tctgacgcgc tccgtcaggt
     6541 tatcgagctg gttaagcatg attgactccg caagtttgta ttcaaaaact gctcagtgag
     6601 aaatgtaaaa accatgttaa acatgccagt gatgcaaagg tagtgcaaga gctatggatc
     6661 gtataattga aaaattagat cacggctggt gggtcgtcag ccatgaacaa aaattatggt
     6721 tgccgaaggg agaattgcca tatggcgaag cggcaaattt cgatcttgtg ggtcagcgcg
     6781 cactacaaat cggcgaatgg cagggggaac ctgtttggtt agtacaacag cagcggcgtc
     6841 acgatatggg gtcggtacgt caggtcattg atctcgatgt tgtgctgttt caactggccg
     6901 gacgaggcgt acaactggcg gagttttacc gatcgcataa atactgtggt tactgcgggc
     6961 atgaaatgta tccgagcaaa accgaatggg cgatgctgtg cagccattgc cgtgagcgtt
     7021 actacccgca aatcgccccc tgcattattg ttgccatccg tcgcgatgat tcgatcctcc
     7081 tcgcccagca tacccgccat cgtaacggtg tccatacagt acttgccgga ttcgtcgaag
     7141 tgggcgaaac cctcgagcag gcagtcgcgc gggaagtgat ggaagagagc ggaattaaag
     7201 ttaaaaactt gcgttacgtg acttctcagc cgtggccgtt tcctcagtct ttaatgaccg
     7261 cgtttatggc ggaatatgac agcggcgaca tcgtgatcga cccgaaagaa ttgctcgagg
     7321 cgaactggta tcgctatgac gatttgccgt tactcccgcc gcccggcacc gtagcgcgcc
     7381 gtctgataga agatactgtg gcgatgtgtc gggcagagta tgagtgatga tacactgacc
     7441 gcctgacgca ctaaggaaca gccaaaatga ccgaacttaa aaacgatcgt tatctgcggg
     7501 cgctgctgcg ccagcccgtt gatgtcactc cagtatggat gatgcgccag gcgggtcgct
     7561 atctaccgga atataaagcc acgcgcgccc aggcgggcga ttttatgtcg ctgtgcaaaa
     7621 acgccgagct ggcgtgcgaa gtgactttgc aaccgctgcg tcgctacccg ctggatgcgg
     7681 cgatcctctt ttccgatatc ctcaccgtgc cggacgcgat ggggttaggg ctctattttg
     7741 aagccggaga aggtccgcgt tttacctcgc cagtcacctg caaagccgac gtcgataagc
     7801 tgccaattcc ggacccggaa gatgagctgg gttacgtgat gaacgcggtg cgtaccattc
     7861 gtcgcgaact gaaaggcgaa gtgccgctga ttggtttttc cggcagcccg tggacgctgg
     7921 caacctacat ggtggaaggc ggcagcagca aagccttcac cgtgatcaaa aaaatgatgt
     7981 atgccgatcc gcaggcgctg cacgctctac tcgataaact ggcgaaaagc gtcactttgt
     8041 atctgaatgc gcagattaaa gccggtgctc aggcagtgat gattttcgac acctggggcg
     8101 gtgtgcttac cgggcgcgat tatcaacagt tctcgctcta ttacatgcat aaaattgttg
     8161 atggtttact gcgtgaaaac gacggtcgcc gcgtaccggt cacgctgttt accaaaggcg
     8221 gcggacagtg gctggaagcg atggcagaaa ccggttgcga tgcgttgggc ctcgactgga
     8281 caacggatat cgccgatgcg cgccgccgtg tgggcaataa agtcgcgttg cagggtaata
     8341 tggatccgtc gatgctgtac gcgccgcctg cccgcattga agaagaagta gcgactatac
     8401 ttgcaggttt cggtcacggc gaaggtcatg tctttaacct tggtcacggc attcatcagg
     8461 atgtgccgcc agaacatgct ggcgtgttcg tggaggcagt gcatcgactg tctgaacaat
     8521 atcaccgcta aggagtgatt atggatctcg cgtcattacg cgctcaacaa atcgaactgg
     8581 cttcttctgt gatccgcgag gatcgactcg ataaagatcc accggatctg atcgccggag
     8641 ccgatgtcgg gtttgagcag ggcggagaag tgacgcgagc ggcgatggtg ctgctgaaat
     8701 atccctcgct tgagctggtg gagtataaag ttgcccgcat cgccaccacc atgccttaca
     8761 ttccaggttt tctttccttc cgcgaatatc ctgcgctgct ggcagcgtgg gagatgctgt
     8821 cgcaaaagcc ggatttagtg tttgtcgatg gtcatgggat ctcgcatcct cgccgtcttg
     8881 gcgtcgccag ccattttggt ttgatggtgg atgtgccaac gatcggcgtg gcgaaaaaac
     8941 ggctctgcgg taaattcgaa ccgctctcca gcgaaccggg cgcgctggcc ccactgatgg
     9001 ataaaggcga gcagctggcc tgggtctggc gcagcaaagc gcgctgtaac ccgttgttta
     9061 tcgctaccgg ccatcgggtc agcgtggaca gcgcgctggc gtgggtacaa cgctgcatga
     9121 aaggctatcg tctgccggag ccaacgcgct gggcggacgc ggtggcctcg gaacgtccgg
     9181 cgttcgtgcg ctatacagca aatcagccct aattcaggta aactgcggat aatttccgta
     9241 tttgagaact taacatgtta caaaacccaa ttcatctgcg tctggagcgc ctggaaagct
     9301 ggcagcatgt cactttcatg gcttgcttat gcgaacgcat gtaccccaat tacgccatgt
     9361 tctgccagca aaccggtttt ggtgatgggc aaatttaccg tcgtattctc gatctcatct
     9421 gggaaacgct gaccgttaaa gacgcaaaag taaatttcga cagccaactg gagaaatttg
     9481 aagaagcgat tccttcagcc gacgatttcg atctgtacgg cgtttatccg gcaatcgatg
     9541 cctgcgtggc gttaagtgaa ctggtccatt cgcgtttgag tggtgaaacg ctcgaacacg
     9601 cggtgaaagt gagtaagacc tccatcacga ccgttgcgat gctggaaatg actcaggttg
     9661 gtcgcgaaat gagcgatgaa gagcttaaag aaaacccagc tgtagagcaa gaatgggaca
     9721 ttcagtggga aatattccga cttttagctg agtgcgaaga acgcgatatc gagctgataa
     9781 aaggccttag ggcagacctg cgtgaggcgg gtgagagcaa tattggtata atttttcagc
     9841 aataagacca gaaaacgtga tttaacgcct gatttgtcgt acctggagtc ttccctttcg
     9901 ccccccgtct ggtctacatt tggggggcga aaaaaagtgg ctatcggtgc gtgtatgcag
     9961 gagagtgcta ttctggcatt tccgtcgcac tcgatgctta gcaagcgata aacacattgt
    10021 aaggataact tatgaacaag actcaactga ttgatgtaat tgcagagaaa gcagaactgt
    10081 ccaaaaccca ggctaaagct gctctggagt ccactctggc tgcaattact gagtctctga
    10141 aagaaggcga tgctgtacaa ctggttggtt tcggtacctt caaagtgaac caccgcgctg
    10201 agcgtactgg ccgcaacccg cagaccggta aagaaatcaa aattgccgca gctaacgtac
    10261 cggcatttgt ttctggcaag gcactgaaag acgcagttaa gtaagattgc gtggcagtga
    10321 acagttttaa cgaaggggtg gtttcacccc ttttgtcttt ctggcgtcga tcattgatgc
    10381 tggctggcgc tctgcttctc actgcctgta gtcataactc ttcacttcct ccctttaccg
    10441 ccagtggatt tgctgaagac cagggcgcgg tacgcatctg gcgaaaagac agcggcgata
    10501 atgtgcatct gcttgccgtg tttagcccgt ggcgcagtgg cgataccacg acgcgagagt
    10561 atcgctggca gggcgataac ctcacgctca tcaatatcaa tgtttacagc aaaccgccgg
    10621 tgaatattcg cgcgcgtttt gacgatcgcg gtgatctgag ctttatgcaa cgtgaatccg
    10681 atggggaaaa gcagcagctt tctaacgacc aaatcgattt ataccgttat cgtgctgatc
    10741 agatccgcca gattagcgat gccttacgtc aggggagagt cgtgctgcgc caggggcgct
    10801 ggcatgcgat ggaacagacc gtgaccacct gcgaagggca aaccattaaa cctgatttag
    10861 attcgcaggc gatagcgcat atcgagcgcc gccagagccg ctcttctgtt gatgtcagcg
    10921 tggcatggct ggaagcgccc gaaggttcgc aattactgtt agtggcaaac tctgatttct
    10981 gtcgctggca acccaacgag aaaacgttct gatttaccag tggcccatac ccatatgacc
    11041 gccaccaccg cagccgccgt agcccatgcc cattccggct ccgcgcggaa tacccgcttc
    11101 agccatcgcg atatctcgtt tcacccgtaa ctcatctaac gactgacgca aattctccat
    11161 ctctttggcg accgcgttaa ttttgctgct atccggtggg ttcgcggcta acagggcatt
    11221 gtattcataa cgcttcgtca ccagttgctg ttgcagtgcg ctgctttgag cgtaaaagtc
    11281 attatggatt ttctgccacg ctgtctgttg ttcgctggtc aaaggcgcgg cattttgctg
    11341 ccacataccg tgtccgccgt gagcaaatgc agatgtcgat cccatcgcca ttgctgaaag
    11401 cgccatcatt accagggcaa ttttcgtgtt ccgtttcatg gttaatcctc cagtggttgt
    11461 cttacttcgg gtattgcatc ttccgtgcca acgatgaaac gctgatatga cgggtaatct
    11521 ggcatgataa acgagtaaaa atgactcgcc tgctgcgggt agcgagtcat ttttactcat
    11581 tgaaacttaa gcctttgtgt tacagcgcag ggtaagcgct gataaaagat ggcatgattt
    11641 ctgctgtcag aaagggatga gcaggcaaag aagaagatgc gttttatgca acgttctaaa
    11701 gactccttag ctaaatggtt aagcgcgatc ctccccgtgg tcattgttgg gctggtaggg
    11761 ttgtttgcgg tgacggtgat tcgcgattat gggcgcgaga ctgccgccgc cagacaaacg
    11821 ctgctggaaa aaggcagtgt acttattcgc gctcttgaat ccggctcgcg cgtcggcatg
    11881 gggatgcgca tgcatcatgc gcagcagcag gccttactgg aagaaatggc cgggcagcct
    11941 ggagtacgtt ggtttgcggt cacggatgaa caaggaacaa tcgtgatgca tagcaactcc
    12001 ggcatggtgg gaaaacagat ttattccccg caggaaatgc agcagttaca tccgggagat
    12061 gaagaagcgt ggcggcggat cgatagcgca gacggtgagc ctgttctgga aatttatcgc
    12121 cagtttcaac cgatgtttgg tgctggaatg caccggatgc gccatatgca gcagtatgcc
    12181 gcgacaccac aagcaatttt catcgctttc gacgccagta atattgtgag tgccgaagat
    12241 cgtgagcaga gaaacaccct gattatcctc ttcgccctgg cgacggtctt gctggcaagc
    12301 gtattgtcat tcttctggta tcgccgctat ctgcgctcgc gccagcttct acaagatgaa
    12361 atgaagcgca aagagaagct ggtggcactg gggcatctgg cggcaggcgt tgcccacgaa
    12421 atccgtaatc cactttcctc aattaaaggg ctggcgaaat actttgccga acgcgcgcca
    12481 gcagggggag aagcgcatca actggcgcag gtgatggcga aagaagccga ccgtttaaac
    12541 cgcgtggtaa gcgagttgct ggaactggtt aagccaacgc atctggcttt gcaggcggtg
    12601 gatctcaaca cgctgattaa ccactcatta cagctggtaa gccaggatgc aaacagccgg
    12661 gagatccagt tacgctttac cgccaacgac acattaccgg aaattcaggc cgatccggac
    12721 aggctgactc aggtcctgtt gaatctctat ctcaatgcta ttcaggcgat tgttcagcat
    12781 ggcgtgatta gcgtgacggt cagcgaaagc ggcgcgggcg tgaaaatcag cgttaccgac
    12841 agcggtaagg gaattgcggc agatcagctt gaagccatct tcactccgta cttcaccacc
    12901 aaagccgaag gcaccggatt ggggctggcg gtcgtgcata atattgttga acaacacggt
    12961 ggtacaattc aggtcgcaag ccaggaggga aaaggctcaa cgttcaccct ctggcttccg
    13021 gtcaatatta cgcgtaagga cccacaagga tgacgcacga taatatcgat attctggtgg
    13081 tggatgatga cattagccac tgcactattt tgcaggcttt actgcgcggc tggggctata
    13141 acgtcgcgct ggcgaacagc gggcgacagg cgctggagca ggtgcgggaa caggtttttg
    13201 atcttgtgct ttgcgatgtg cgaatggcgg agatggacgg catcgccacg ctgaaagaga
    13261 tcaaagcgtt aaacccggca attccggtgc tgattatgac tgcgtactcc agcgtcgaga
    13321 cggcggtaga ggcactgaaa actggggcgc tggattatct catcaagccg ctggatttcg
    13381 ataacctaca ggcgacgctg gaaaaggcgc tcgcgcatac gcacagtatt gatgctgaaa
    13441 cacctgcggt gactgccagc cagttcggta tggtcggtaa aagcccggcg atgcaacacc
    13501 tgctcagtga aatcgccctc gtcgcgccat cggaagccac tgtgctgatc cacggcgatt
    13561 ccggcaccgg taaagagctg gtcgccaggg cgattcacgc cagtagcgca cgtagcgaaa
    13621 aaccgctggt aacgctcaac tgtgcggcac tcaacgaatc cttgctggaa tctgaattgt
    13681 tcggtcacga aaaaggggcg tttactggag ccgataaacg ccgggaaggg cgctttgttg
    13741 aggcggacgg cggcacgctg tttctcgatg aaattggcga tatctcgccg atgatgcagg
    13801 tgcgtctgct gcgtgcgatt caggagcgcg aagttcagcg tgtcggtagc aaccagacta
    13861 tctcggttga tgtccggctg attgcggcga cccatcgcga tcttgccgca gaggtgaatg
    13921 ccgggcgttt tcgccaggat ctctactatc gcctgaatgt ggtggcgatt gaagtaccat
    13981 cgctgcggca acggcgggaa gatatccctc tgctggctgg ccattttctg cagcgctttg
    14041 ccgagcgtaa tcgcaaggcg gtaaaaggtt ttactcccca ggcgatggat ctgttgattc
    14101 attacgactg gccgggaaat attcgtgagc tggaaaacgc ggtggaacgg gcagtggtgc
    14161 tgctgaccgg ggaatatatt tccgaacgcg agctgccgct ggcgattgcc agtacgccga
    14221 tcccgctggg gcaaagtcag gatattcagc cgctggtgga agtggaaaaa gaggtgattc
    14281 tggcggcact ggagaaaacg ggcggcaaca aaactgaagc cgcccgtcag ttagggatca
    14341 cgcgtaaaac gttattggca aaactgtcgc gttagttctg ctcgcgttcg atagcacgcc
    14401 agccgatatc tttccggcag aagcagtcgt cccagtggat atcggtcatt aaggcatagg
    14461 cgcgtttctg cgcttctgcc acggtatgac ccagcgcggt gacgcacagt acgcgcccgc
    14521 cgttggtcac tacctgctcg tcatccgcca gttttgtgcc cgcgtggaac actttgccgc
    14581 ctgccacttc ttccagcggc aggccgtgga tcacgtcacc ggtgcggtaa tcacccggat
    14641 atccacccgc agccatcacc acgccgagag aagcgcgttc atcccactcg gacgttttct
    14701 cgtccagttt gctttcacag gccgctaggc agagctcaac cagatcggac ttcatgcgca
    14761 gcataatcgg ctgggtttcc ggatcgccaa agcggcagtt aaattcaata accttcggat
    14821 tgccctgttt gtcgatcatc aggcccgcgt agagaaaacc ggtgtaggtg ttgccttccg
    14881 ccgccatgcc tttcacggtt ggccagataa tacgttccat ggtgcgctga tgaacgtcat
    14941 cggttactac cggcgcgggg gagtaagcgc ccatcccgcc ggtgtttggt ccggtatctt
    15001 tatcgcctac gcgtttgtga tcctggctgg tagccatcgg cagcacatgc tcgccgtcca
    15061 ccatcacgat aaagctcgct tcttcgccat cgaggaactc ttcgataacg atgcgatgac
    15121 ccgcgtcgcc aaaagcgttg cccgccagca tatcgtgaac agccgcttcc gcttcttcca
    15181 gcgtcatcgc cacgataacg cctttcccgg cagccagacc gtccgcttta atgacgattg
    15241 gcgcgccttt ctcacgcaga tacgccagcg caggttctac ctcggtgaag ttctggtatt
    15301 ccgccgtagg gatcttatgg cgggccagga aatctttggt aaacgctttt gagccttcca
    15361 gttgggccgc acctgcggtt gggccgaaga ttttcagccc ggcggcgcgg aaggtatcga
    15421 ccacgccttt caccagcggc gcttccgggc cgacgatggt cagatcaatc ttttcgtttt
    15481 gtgcgaaatc caacagcgcc gggatatcgg tcacgccaat agcaacgttt tgcagcgcgg
    15541 gttccagcgc agtgcctgca ttacccggag caacaaaaac agtctcaacc agcggcgact
    15601 gggccgcttt ccaggccagc gcgtgctcgc gcccgccgtt accaatcact aatactttca
    15661 tctattgctc cattaatggc ggaagtggcg catgtcggtg aagagcatcg caataccgtg
    15721 ctcgtcggcg gcggcaatca cttcgtcatc acggatggaa ccgccaggct ggattacgca
    15781 ggtcacgccc gcagcggcgg cggcatcaat accgtcgcgg aacgggaaga acgcgtcaga
    15841 agccatcgag gaacctttca cttccaggcc ttcatcggca gctttaatac cggcgatttt
    15901 cgcggagtac acgcggctca tctggcccgc gccaataccg atggtcatat tgtttttggc
    15961 atagacgata gcattggatt tcacgaactt cgccactttc cagcagaaca gcgcatcgcg
    16021 cagttcctgt tcggtcggct gacgttgggt gacgacgcgc agttcttccg caccgaccat
    16081 ccccaggtca cgatcctgaa ccagcagacc gccgttcacg cgtttgaaat caagacccgg
    16141 aacacgctcg ccccactgac cgcaggtcag aacgcgtacg ttctgcttgg cggcggtgat
    16201 tttcagggct tcttcgctgg cggaaggcgc aataatcact tcgacaaact gacgagaaat
    16261 gatggcctgt gcggtttccg catctagctc gcggttaaag gcaatgatgc cgccgaatgc
    16321 ggaggttggg tcggttttgt acgcgcgatc gtaagcatca agaatggaat tgccgatagc
    16381 tacaccgcaa gggttggcgt gcttcacaat cacacatgcc ggctcggcga actctttcac
    16441 gcactccagc gccgcatcgg tatcggcgat gttgttataa gagagggctt taccctgaac
    16501 ctgggttgcg gtagcaacgg aggcttcttt cacattctct tctatataga aggcagcctg
    16561 ctggtggctg ttctcgccgt aacgcatatc ctgcttctta atgaagttca ggttcagcgt
    16621 gcgtgggaag cgaccggcgg cttctttgct ttcaccgtgg tacgccggaa ccatgctgcc
    16681 gaagtagttg gcaatcatgc tgtcgtaggc ggcagtgtgt tcgaaggctt tgatggcgag
    16741 gtcgaaacgg gttgcaagcg tcagcgatcc ttcgttgtca tccatctctt taataatggc
    16801 gtcgtagtcg ctgctcttca ccacgattgc gacatcttta tggttcttag cggcggagcg
    16861 caccatggtc gggccgccga tatcgatgtt ctcaaccgca tcttccagcg agcagccttc
    16921 acgagcaaca gtctgggcga acggatacag gttaacaacc accatatcga taggctggat
    16981 ctgatgttct tccataatgg catcgtcctg gccgcgacgg cccagaatgc caccatgtac
    17041 tttcggatgc agggtcttca cgcgtccatc catcatctcc gggaaaccgg tgtaatcgga
    17101 aacttcggtt accggcagac ctttttctgc taacagacgg gcagtgcccc ctgtagacag
    17161 cagctccaca ccgcgtgcgg aaagtgcctg ggcgaattcg acgataccgg ctttgtcaga
    17221 aacactgagc agagcgcggc ggactggacg acgttgttgc atggtaaatc ccctggattt
    17281 gactattaca gagagcgtta gctgaatttt tcgcgaaaaa ctcagctaac gcccctaacg
    17341 gggcatcctt atttttcgcc cgcattgtaa cgaaaacgtt tgcgcaacgc tcgcgaattt
    17401 ttctctttca atggtgatca caattttgac agtggttacc gtgggaaaaa tacagaaatt
    17461 acattgatga ttgtggataa ctctgtgcgt aaaaaggtat aaagcggggt tttgctgggg
    17521 aatgcagcag tcagtcattt ttctgcaatt tttctattgc ggcctgcgga gaactcccta
    17581 taatgcacct ccatcgacac ggcggatgtg aatcacttca cacaaacagc cggttcggtt
    17641 gaagagaaaa atcctgaaat tcagggttga ctctgaaaga ggaaagcgta atatacgcca
    17701 cactcgcgac agtgcgctaa agcgcgtcgc
//
LOCUS       DAJVUN010000075        17679 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.075, whole genome shotgun sequence.
ACCESSION   DAJVUN010000075 DAJVUN010000000
VERSION     DAJVUN010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17679
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.075"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            116..355
                     /gene="relB"
                     /locus_tag="OQQ76_002161"
     CDS             116..355
                     /gene="relB"
                     /locus_tag="OQQ76_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin RelB"
                     /protein_id="HCS1968655.1"
                     /translation="MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERL
                     PFKQTLLSDEDAELVEIVKERLRKPKPVRVTLDEL"
     gene            355..516
                     /gene="relE"
                     /locus_tag="OQQ76_002162"
                     /pseudo
     CDS             355..516
                     /gene="relE"
                     /locus_tag="OQQ76_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416081.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     RelE"
     gene            606..1196
                     /locus_tag="OQQ76_002163"
     CDS             606..1196
                     /locus_tag="OQQ76_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001366942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HCS1968656.1"
                     /translation="MKIYVIKIAVHGVSPMVWRRLRIAADTSLAALHFIFQIVQGWGD
                     DHLHQFHIYGKDYGISYEGGIGFVDNPFRVVIDDFAFDAGDRFTYEYNFFEHWLHDIR
                     VEAIYENSTLKAPFCISGHGMPGATAADEFDKTLAFLEAIVNADDETTVGEIRPFADD
                     LDAVRFNRHKINRQLSRLDLASPVLEPEVIWLGRRR"
     gene            1333..1905
                     /locus_tag="OQQ76_002164"
     CDS             1333..1905
                     /locus_tag="OQQ76_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1968657.1"
                     /translation="MQYAYIRVSSADQNTARQEEALSKAGFQPDKICVEHASAKDTNR
                     PGLQELLGQLRPGDTLLVHSIDRLCRNMSDMCAVTTRLRDQGVTLIFLKEQLTFSAGT
                     NNPMQELQLHMMSAFSQFERALLKERQADGIAAKKARGEKTGRPGADIKKIQEIDALR
                     SRGVRLRIACDHAGLGVSTYYKLRHQMNNQ"
     gene            1942..3333
                     /locus_tag="OQQ76_002165"
     CDS             1942..3333
                     /locus_tag="OQQ76_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISKra4-like element ISKpn19 family transposase"
                     /protein_id="HCS1968658.1"
                     /translation="MQLTLQIVITDESGSSRTEELMTIQKSGETRNDIGLSVSESKLL
                     LNTVQQSVVQLQADEYTQHHIRCPHCLAARRIKGKQKIRYRTLFGVIPVSGLRVYRCR
                     CEESDTKTVSLLSDWAGDYSHPALKYIETRWASMISYEMTTRLLKDILPVGHSLNAST
                     VRNHLCQVAQRLDAEAEAHSGFLSGCPRDWGNLPRPGKPLVVGIDGGYVRDRDDKKRN
                     FEIIAGKSFSVGAPADTRRFGFVQKDDCHPERRLMTHLSAQGMQANQQIFFLSDGADN
                     LRDLQFGMYPESTHVLDWFHITMRLKVLMQYARGLLVSDPEAGSKVLALLESIKRYLW
                     HGNVVAALEHIDNCVMYCDDPELSYPSLKSLQKHLDEMYTYIRNNKMMIPNYGEMRRY
                     GEPVSTAFVESTINEVIARRMAKKQQMQWSRKGAHYLLQTRTAVLNNELQDKFVCWYP
                     GFQSDGKGPAMAA"
     gene            3378..3794
                     /locus_tag="OQQ76_002166"
     CDS             3378..3794
                     /locus_tag="OQQ76_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001498886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1968659.1"
                     /translation="MDRLGRDLRHLINTVHDLTARGTGLKVLTGHGATIDTTTAAGKL
                     VFGIFAALAEFERELIAERTTAGLASARARGRNGGRPYKMTPVKLRLAMASMGQSETK
                     VSTLCQELGITRQTLYRHISPVGQLRADGIKLLNRG"
     gene            complement(4113..4769)
                     /locus_tag="OQQ76_002167"
     CDS             complement(4113..4769)
                     /locus_tag="OQQ76_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HCS1968660.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
     gene            5164..6179
                     /locus_tag="OQQ76_002168"
                     /pseudo
     CDS             5164..6179
                     /locus_tag="OQQ76_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(6222..9227)
                     /locus_tag="OQQ76_002169"
     CDS             complement(6222..9227)
                     /locus_tag="OQQ76_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /protein_id="HCS1968661.1"
                     /translation="MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSR
                     GDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTR
                     REHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
                     GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGP
                     VTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQK
                     RMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALA
                     SACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRV
                     RRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
                     KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRS
                     LGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPD
                     SLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA
                     EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGG
                     GEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDS
                     IFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDH
                     DADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLT
                     QAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYT
                     DGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINML
                     GHYSFTLAELVTKGHLRPLKEASEAENVA"
     gene            9391..9948
                     /locus_tag="OQQ76_002170"
     CDS             9391..9948
                     /locus_tag="OQQ76_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1968662.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGD
                     MGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTG
                     ATEIAHQLSIARSTVYKILEDERAS"
     gene            10131..10991
                     /locus_tag="OQQ76_002171"
     CDS             10131..10991
                     /locus_tag="OQQ76_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HCS1968663.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
     gene            11201..11605
                     /locus_tag="OQQ76_002172"
                     /pseudo
     CDS             11201..11605
                     /locus_tag="OQQ76_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
     gene            complement(11712..12548)
                     /locus_tag="OQQ76_002173"
     CDS             complement(11712..12548)
                     /locus_tag="OQQ76_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HCS1968664.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(12548..13351)
                     /locus_tag="OQQ76_002174"
                     /note="aph(3'')-Ib"
     CDS             complement(12548..13351)
                     /locus_tag="OQQ76_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HCS1968665.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            complement(13412..14227)
                     /gene="sul2"
                     /locus_tag="OQQ76_002175"
     CDS             complement(13412..14227)
                     /gene="sul2"
                     /locus_tag="OQQ76_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HCS1968666.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            14557..14733
                     /locus_tag="OQQ76_002176"
     CDS             14557..14733
                     /locus_tag="OQQ76_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HCS1968667.1"
                     /translation="MLTDTKLRNLKPRDKLYKVNDREGLYVGVASENGIYGHSRFCNT
                     DFDDKLACLNLSGV"
     gene            complement(14915..15919)
                     /locus_tag="OQQ76_002177"
     CDS             complement(14915..15919)
                     /locus_tag="OQQ76_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element IS5075 family transposase"
                     /protein_id="HCS1968668.1"
                     /translation="MENIALIGIDLGKNSFHIHCQDHRGKAVYRKKFTRPKLIEFLAT
                     CPATTIAMEACGGSHFMARKLEELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEAAS
                     RPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISR
                     LSTLLEDSSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCV
                     GTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLL
                     VQCARVFIQKLEHQSGKLADWVRELLCRKSNFVVTCALANKLARIAWALTARQQTYEA
                     "
     gene            complement(15998..17596)
                     /locus_tag="OQQ76_002178"
                     /pseudo
     CDS             complement(15998..17596)
                     /locus_tag="OQQ76_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014834018.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
BASE COUNT         4295 a         4490 c         4732 g         4162 t
ORIGIN      
        1 agcggacagt gatcaccgtt cttacgacta ctttctgact tccttcgtga cttgccctaa
       61 gcatgttgta gtgcgatact tgtaatgaca tttgtaatta caagaggtgt aagacatggg
      121 tagcattaac ctgcgtattg acgatgaact taaagcgcgt tcttacgccg cgcttgaaaa
      181 aatgggcgta actccttctg aagcgcttcg tctcatgctc gagtatatcg ctgacaatga
      241 acgcttgccg ttcaaacaga cactcctgag tgatgaagat gctgaacttg tggagatagt
      301 gaaagaacgg cttcgtaagc ctaagccagt acgtgtgacg ctggatgaac tctgatggcg
      361 tattttctgg attttgacga gcgggcacta aaggaatggc gaaagctggg ctcgacggta
      421 cgtgaacagt tgaaaaagaa gctggttgaa gtacttgagt caccccggat tgaagcaaac
      481 aagctccgtg gtatgcctga ttgttacaag atggagagca tgaaaaacct cggggcagcc
      541 atcgaatgat gccatctaca ggggttaaaa taaccaccat catttcataa caatacctgc
      601 tgactatgaa gatctacgtc atcaaaatag cagttcatgg agtcagtccg atggtctggc
      661 gtcggctgag aattgctgcc gacacgtcac tggccgcgct tcacttcatt ttccagatag
      721 tgcagggctg gggggacgac catctccatc aatttcacat ttatggcaaa gattacggta
      781 tctcctacga aggaggcatc ggttttgtcg ataatccgtt ccgggtcgtg attgatgatt
      841 ttgcttttga tgctggcgat cgctttacct atgaatacaa tttctttgag cactggcttc
      901 atgacattcg tgttgaggcc atttatgaaa actctacgct gaaagcgccg ttttgtataa
      961 gcggccatgg tatgcccgga gccacagctg cggatgagtt cgataaaacc ctggcgtttc
     1021 ttgaagctat cgttaatgcg gatgatgaaa caacggtcgg cgagatccgc ccttttgctg
     1081 acgacctgga tgctgtcagg ttcaaccgcc acaaaatcaa ccggcaactg agcaggctcg
     1141 accttgcatc tccggtactg gagcctgaag ttatctggct gggccgtcgt cgctgactga
     1201 tgtctataaa ggtatacgtt ttcagcatgc ctctcagatc cccgaaaaaa tgtctataaa
     1261 cctccctaaa tcagtgttta tggattattc tttaaatctc tatgatgttt aaagaccttc
     1321 cggaggtttt gcgtgcaata tgcctacatc agggtaagct cggccgatca gaatacggcc
     1381 cgtcaggaag aggcattgtc aaaggcgggt tttcagcctg ataaaatttg tgttgagcat
     1441 gccagcgcga aggacacaaa ccgcccgggg ttacaggaac tcctggggca attacgccct
     1501 ggtgatacgc ttctggttca ttccatcgat cgcctttgcc ggaatatgtc ggatatgtgc
     1561 gctgtcacca cccggcttcg tgaccagggc gttaccctta tttttctgaa agagcagctg
     1621 acgttcagcg ccggcacaaa caatccgatg caggaactgc agctgcacat gatgtcggca
     1681 ttcagccagt ttgaacgagc cttactgaag gaaaggcagg ccgacggcat cgccgcgaaa
     1741 aaagcacggg gtgaaaaaac agggcgcccc ggcgccgata tcaaaaagat ccaggaaatt
     1801 gacgcactca gaagcagagg ggtcaggctc aggatcgcct gcgaccatgc gggccttggc
     1861 gtttccacat attataagct tcgtcaccag atgaacaacc agtagccggg agatagtcat
     1921 ccaccacagc aggaggcaat gatgcaactg acgctccaga tagtcatcac cgatgaatca
     1981 ggctccagtc gaacggagga actgatgaca atccagaaat caggggagac ccggaacgac
     2041 atcggattat cggtgtcaga atccaagctg ttgctgaata cggtccagca gtcggtggtc
     2101 cagctgcagg cagacgaata tactcaacac catatccggt gccctcactg ccttgctgcg
     2161 cgcagaatca aaggcaaaca gaaaatacgg taccggacgc tgtttggcgt tattccggta
     2221 tccgggcttc gggtgtaccg gtgccgttgt gaagagagtg atacaaagac agtcagtttg
     2281 ctcagcgact gggccggcga ttattctcac ccggcactga aatatattga aacccgctgg
     2341 gcctcgatga tctcctatga aatgacgact cgtctgctga aagatattct gccggtgggc
     2401 cacagcctga atgcctcaac ggtgaggaat catttatgcc aggtggcgca gcgtcttgac
     2461 gctgaggctg aagctcattc aggttttctt tccggctgcc cccgcgactg ggggaacctg
     2521 cccaggccag gaaaaccgct tgtggtgggt atagatggtg gttatgttcg cgatcgggat
     2581 gacaaaaagc gtaattttga aattattgcc gggaagtctt tttccgttgg tgcgcctgct
     2641 gacacccgcc gcttcggttt tgttcagaag gatgactgtc atccggaacg caggctcatg
     2701 acccaccttt cagcgcaggg aatgcaggcc aaccagcaga tattttttct gtccgacggc
     2761 gcggataatc tcagggacct ccagttcggt atgtaccctg agtcaacgca tgtgctggac
     2821 tggtttcata tcaccatgag gctgaaggtg ctcatgcaat atgcccgggg actgctggta
     2881 tcagatccag aggcggggag taaagttctg gcactgctgg aaagcattaa acgatatctc
     2941 tggcatggca atgttgtcgc tgcgctggaa catattgata attgcgttat gtattgcgat
     3001 gaccctgaac tcagctatcc tagcctgaaa tccctgcaaa aacatctgga tgaaatgtat
     3061 acctacatcc ggaataataa gatgatgatc ccaaactacg gcgaaatgcg tcggtacgga
     3121 gagccggtat caaccgcgtt tgtggaatcc acgatcaatg aagtgatcgc cagacgaatg
     3181 gccaaaaagc agcagatgca gtggagcaga aaaggggctc attatttgtt acagacccgg
     3241 accgccgttt tgaataacga actgcaggat aaatttgtct gctggtatcc gggttttcaa
     3301 agtgacggga agggaccagc gatggcagca tagctcacgc tgccccaata ttttttatgc
     3361 tctcggtcgt atggaagctg gaccgcctcg gtcgtgatct tcgtcatctc attaatacag
     3421 tgcacgacct gaccgcgagg gggaccggtc tgaaagtgct gaccggtcac ggggcgacta
     3481 tcgacacaac aacggccgct ggcaagcttg tcttcggtat ctttgccgca ctggcggagt
     3541 ttgagcgcga actgattgct gaaagaacga ctgcaggtct ggcatcagca agagcccgtg
     3601 ggcggaacgg cggccgacct tataaaatga cgccagtcaa actgcgactg gcaatggcat
     3661 caatgggaca atcagaaaca aaggtcagta cgctatgcca ggaacttggg ataacccggc
     3721 aaactttgta caggcatatt tcccctgttg gtcaactgcg ggcggacggg atcaagctgc
     3781 tcaaccgtgg ataatttgaa cggacggaaa aatctggggt tccggcgtag tacccctatc
     3841 acctccacat ttttgcaaca gtgccttata aatggcagcc ttatgtttac ttgccaagat
     3901 gggctaccat atgatgtttt atactgagca atattaatat tatctttaat ggaaaaatta
     3961 agcccactaa gtgacccact gctatatggc tctattgtga agacgcctga gggtaaaaat
     4021 ttatacatgg ttgtccctat gtctattatt gcaaggttga caatattatt cgttttataa
     4081 atttgagcgt ttaaaatcac acatcaaagc aattagtcag gataaacaac aatacccagt
     4141 gcttcgagaa tcagttcttg ctgccaggct gcaattttga tacctgatgt atcgactttg
     4201 cggggatcta aaccgtcgag ttcggcgtgg cataaattgg caccctgtag gctaaattgc
     4261 ccccagacat cttcggaaaa aacacctcga cttaagtctg actctttcag tgatgcaccc
     4321 gctaggttcg ttcctatcca gcgattttca aacaactcac atttttctaa acaaaccctc
     4381 tccatattgg cataggaaag attacatcca gaaataaatg ctgagcaaaa gtacatacga
     4441 ttactcactt gatgggcaaa gtttgttcgg gaaaagttgg caccttttaa atcacacgca
     4501 cggaactcta taccgtagca attggcatta ctgaagtttg ccatcgcaag ttggcattgt
     4561 tggaaacttg catcacgaag atctgcgaca tcaaagtggc agccttcgat atcaccctgt
     4621 tcaatgaact tgcagttgac gaatgtcgta tcacgcaagt tagcacgtcg aaagtcgctg
     4681 cgaatgaatg tgcaagcggt gaaggtgaga tcacttaagt ctttatgtga aaagttgtgg
     4741 tgccgatatg tatgattgta ggtttccatg agtactcctt gttgaaagga gggctagact
     4801 accattatac atatgccaag acattaaaat aaaagcctgt tacatcaaca cattacaacc
     4861 cctcaattta cctgttttaa gtggtcaaat tggcgcgtag agcgcctatc gctcttgcat
     4921 tggcacgcgg ccctgttgaa aaaagttatt cgctttagat agggttagga gagccgtgct
     4981 tcgccggtaa aaaatcggac tatccgacgc agggcggact catcggcgga gaagcaaact
     5041 ttgactatat ctccctacac ttggaagagg gctagactgg ccccatagat caccagacac
     5101 ttcgactctc ttaaaataag aggtagtctt ggaactatgt ttaataccag tcagaacgat
     5161 aagatggttg aagtgttatc aggacctgag cggcgtcggc gtcgtacacc gcaggaaaaa
     5221 attgccatta ttcagcagac tatggagccc ggtatgaccg tgtctcatgt cgcgcgcctg
     5281 catggcatca atgcaaacca gatattcaaa tggcgcaagc aatattaaga cggttcactg
     5341 acggctgttg catcgggcga ggaagtggtg ccggcctccg aactcgctgc cgccaataag
     5401 caaattcgcg aactccagcg ccttctgggc aaaaagacga tggaagccga gatactcaaa
     5461 gaggccgtgg agttcggccg ggcaaaaaaa tggattgcgc atgcgccctc gttgcctggg
     5521 aacgacgaat aagcgacgtt tgcagaagtc ttggcgtgtc gcgtgcgcag ttgagcattc
     5581 gggttcaccg gccatctgac tgacaggatc gcagacggca gccccgttct gacgatacca
     5641 ccgtattgtc ccggataaac atggcggtgg ctgacctgcc gacgtatggt tatcgccgtg
     5701 tgtgggcgct gctgcgacgg gagtcggagc gggacggcct gcctgtggtt aatgcaaagc
     5761 gggtgtatcg cattatgaga acgcataatc tgcttcttga acgtaaaccc gctgatcctt
     5821 gccgtaagcg ggcccataag gggcgcgtag cagtagcgga aagtaaccgg cgctggtgct
     5881 cagatggctt tgagttccgc tgtgataatg gcgaaaagct gcgggtgacc ttcgcgcagg
     5941 actgctgcga cagggagatc attgactggg cagcgagcac cggaggctat gacaaagaaa
     6001 cggtgcagga tgtcatgctg ggtgcggtgg aaaaacgctt cggaaggcag ttgccaacag
     6061 tgccggcgtt cgcccggttg ctgggactgg agccttgtac gacagcagtg cgaagcccgg
     6121 aaagcaatgg catagcagaa agcttcgtga tgacgataaa acgggactac atcagcatca
     6181 ggattttagg ggtctgacgc tcagtggaac gaaaactcac gttaagcaac gttttctgcc
     6241 tctgacgcct cttttaatgg tctcagatgt cctttggtca ccagttctgc cagcgtgaag
     6301 gaataatggc cgagcatatt gatatgtccg tggcaaagcg gggagaggcg tgcgatatct
     6361 tcatcattca gtgtttcacc ctgcgcccgg agatgatcca gggctgcctg catataaata
     6421 gtgttccata acacgacggc gttagtgacc agccccagtg tgcccagttg atcttcctga
     6481 ccgtcggtat atcgttttct tatctcacct ttttgaccgt gacagatggc tctggcaacg
     6541 gcatggcgac tttctccccg attaagctgg gtcagaatgc gccggcggta atcttcatca
     6601 tcaatataat taagcagata cagcgttttg ttgatgcgcc ccacttcaat gattgcctga
     6661 gtcagtccgg aaggacgttc acttttcagc aatgaacgga ccagcactga aacctgtact
     6721 ttgcccagct tcagggagcc agcggtccgg atcatttcgt cccactgaag gactattttt
     6781 cggggatctg attgccctct ggcaatatca ttcagcacgc catagtcggc atcatggtcc
     6841 attcgccaga aaaccgaagc accggcatca gccaggcgtg gagaaaactg gtatcccagc
     6901 agccagaaaa ggccaaagac aagttcgctg gcacctgctg tatcggtcat aatttcggtt
     6961 ggattcagcc cggtctcctg ttccagaaga ccttccagca caaagataga gtccctcagc
     7021 gtccccggta taacgatgcc atgaaagccg gaatactgat cggacacaaa gttgtaccag
     7081 gtgatccctc tgttattacc aaagtatttg cggttcggtc cggcattgat tgttctgact
     7141 ggcgtaacaa agcgcattcc atctgcagat gccacttctc ctccacccca tatctgtgcc
     7201 agtggcagcg ttgcctgaaa atcaaccagt ctggcattag cgctggtgat agtttcagcc
     7261 cgcagatagt tcgcttttgt ccagttcagc cggtgtcggg tcagtgcagg aacatttgat
     7321 ctgatcagtg gttccagacc gatattgcag gcttcagcca tcagcacggc gctgatgctg
     7381 acgggcagat catcaactct ggcactggct tcactagcat ggaaaaactc atcagcaaat
     7441 ccggtatggg cgttaatttc gagcagcaac tccgttaaat ccaccggagg gagtagatca
     7501 ctgatcattt tgctcagtcg tttcagactg tccggctcat caagactggc gaggggagaa
     7561 attgtcaacc ggggcttcgg gccagaaaca tcgagttcga cagcctcatt ttcgcaaaga
     7621 cgtgcagcaa cctgtctgta acgactatca agctgatgac ccagagattt tattgcttcc
     7681 tgcgggtctg tcgggtgccc caaagaacga taaaccttaa tccggtttgc ctgccagtca
     7741 gcaccctgta gtaatcttgc acgaggatct ccccaccggt tactgccggt aacgtagaca
     7801 tccctccgcc tcagactatc ctgcagttta ctgagaaagc agagcgtgta tcccctgcgg
     7861 gtgatatgtt tttccttgtt aatcaccagc cgtttccatg accgactgat aatttccgtt
     7921 ggtgcgtcgt caaaaaactg ccgccgtgag ctgaactccc ggctgaggta gtcacaggca
     7981 ttcagagtgg taaccccggc aggtgcggat gaaaatttaa cggtattcag cagatggggc
     8041 aggaaacgac gaacgcgccc gtactgctcc accatttctt catgaaaatt atcgtctgag
     8101 ggccgggcaa tttcacggac aagcgtgatg atttcagcca gcttttgcct tgggatgtag
     8161 ctgaacacct cagcacgaat cgattcgtcc ggtgtttctt ctttcagcag gtacgaacat
     8221 gcgctggcga gcgccaatgc agatttatcc agatccttca gcgagcggag ccgttttttc
     8281 tgcccaatct ttctggcgtc acggatgata acggccagca tggcgtccag aacgtccaat
     8341 gcatcatcca gcgccagcgt ttcccatgca aggacaaagg caaccagaac cgccatcctt
     8401 ttctgcggtg acatcctggc aatattgaac accgaagtca taccagcata acgtgcgaga
     8461 tttttcaggc gcacagccgg gagtgtactc aggttttcag catgcaggcc aaaatcgttc
     8521 agagttttcc agcgttcaat tgcttcatta aacgccggac cactgatggt cacagggccc
     8581 tttttcagtg attccagtaa agacaggcgg ctgcaatcag ttggccccag cagcatctcc
     8641 agctgtgaac gctgttcggc tgacggtatc agtgccagtt tgttccacag gcgcaacgtc
     8701 gccttttccc ttacctctga aatcaaccgg gtcagcgtag tggctccggg gagaataata
     8761 cgatgttgca taagccaccc tgtcgccaga tcgaaaagca ggccaggacg ttcgttgctt
     8821 atccagctcc gggtatataa aagacgggta aggcgaaatg tccagggcca ggcaaattca
     8881 cgatactgat agtgctgacg tatcagcgct gcatgctcac ggcgggtatt ttccctctga
     8941 ccgtattctg caagaacggt gatatcacga atcccgagct gtctggcggt aaaatgccgg
     9001 acgccggaag gaatatgatt catatcggtg aggaaggtgc ccagaaaacg gacacatcca
     9061 atttgcaggg caatgcccag acggttgtga tcacctctgc tttttccgat aaattccttg
     9121 tctgcttcat caaggtgaaa atatcgtgcc agctgaagct catccggttc accggtgaat
     9181 ctgccatagc tttcagtctg ctcagtggtc agaaagtcaa cgggcatatc ggcctccctg
     9241 cctgacgggc atttagtaac atttttccaa ccgtacgaaa tgttataaat tatcggacat
     9301 cgtaaaactg ttacattaat atgtctatta aatcgtaaat ttgtaataat agacatgagt
     9361 tgtccgatat tcgatttaag gtacattttt atgcgacttt ttggttacgc tcgggtctca
     9421 accagtcagc agtctcttga tcttcaggtc agagcactca aagacgcagg tgtgaaagca
     9481 aaccgtatat ttaccgataa ggcatccggc agttcaacag accgggaagg gctggatttg
     9541 ctgaggatga aggtggagga aggtgatgtc attctggtta agaagctcga ccgtcttggc
     9601 cgcgacactg ccgatatgat ccaactgata aaggaatttg acgctcaggg cgtggcagtc
     9661 cggttcattg atgacgggat cagtaccgac ggtgatatgg ggcaaatggt ggtcaccatc
     9721 ctgtcggctg tggcacaggc tgaacgccgg aggatcctag aacgcacgaa tgagggccga
     9781 caggaagcaa agctgaaagg aatcaaattt ggccgcaggc gtaccgtgga caggaacgtc
     9841 gtgctgacgc ttcatcagaa gggcactggt gcaacggaaa ttgctcatca gctcagtatt
     9901 gcccgctcca cggtttataa aattcttgaa gacgaaaggg cctcgtgata cgcctatttt
     9961 tataggttaa tgtcatgata ataatggttt cttagacgtc aggtggcact tttcggggaa
    10021 atgtgcgcgg aacccctatt tgtttatttt tctaaataca ttcaaatatg tatccgctca
    10081 tgagacaata accctggtaa atgcttcaat aatattgaaa aaggaagagt atgagtattc
    10141 aacattttcg tgtcgccctt attccctttt ttgcggcatt ttgccttcct gtttttgctc
    10201 acccagaaac gctggtgaaa gtaaaagatg ctgaagatca gttgggtgca cgagtgggtt
    10261 acatcgaact ggatctcaac agcggtaaga tccttgagag ttttcgcccc gaagaacgtt
    10321 ttccaatgat gagcactttt aaagttctgc tatgtggtgc ggtattatcc cgtgttgacg
    10381 ccgggcaaga gcaactcggt cgccgcatac actattctca gaatgacttg gttgagtact
    10441 caccagtcac agaaaagcat cttacggatg gcatgacagt aagagaatta tgcagtgctg
    10501 ccataaccat gagtgataac actgctgcca acttacttct gacaacgatc ggaggaccga
    10561 aggagctaac cgcttttttg cacaacatgg gggatcatgt aactcgcctt gatcgttggg
    10621 aaccggagct gaatgaagcc ataccaaacg acgagcgtga caccacgatg cctgcagcaa
    10681 tggcaacaac gttgcgcaaa ctattaactg gcgaactact tactctagct tcccggcaac
    10741 aattaataga ctggatggag gcggataaag ttgcaggacc acttctgcgc tcggcccttc
    10801 cggctggctg gtttattgct gataaatctg gagccggtga gcgtgggtct cgcggtatca
    10861 ttgcagcact ggggccagat ggtaagccct cccgtatcgt agttatctac acgacgggga
    10921 gtcaggcaac tatggatgaa cgaaatagac agatcgctga gataggtgcc tcactgatta
    10981 agcattggta actgtcagac caagtttact catatatact ttagattgat ttaaaacttc
    11041 atttttaatt taaaaggatc taggtgaaga tcctttttga taatctcatg accaaaatcc
    11101 cttaacgtga gttttcgttc cactgagcgt cagaccccta aaagaacttt ccgctaagcg
    11161 atagactgta tgtaaacaca gtattgcaag gacgcggaac atgcctcatg tggcggccag
    11221 gacggccagc cgggatcggg atactggtcg ttaccagagc caccgacccg agcaaaccct
    11281 tctctatcag atcgttgacg agtattaccc ggcattcgct gcgcttatgg cagagcaggg
    11341 aaaggaattg ccgggctatg tgcaacggga atttgaagaa tttctccaat gcgggcggct
    11401 ggagcatggc tttctacggg ttcgctgcga gtcttgccac gccgagcacc tggtcgcttt
    11461 cagctgtaag cgtcgcggtt tctgcccgag ctgtggggcg cggcggatgg ccgaaagtgc
    11521 cgccttgctg gttgatgaag tactgcctga acaacccatg cgtcagtggg tgttgagctt
    11581 cccgtttcag ctgcgtttcc tgtttggggt cgtttgcggg aaggggcgga atcctacgct
    11641 aaggctttgg ccagcgatat tctccggtga gattgatgtg ttcccagggg ataggagaag
    11701 tcgcttgata tctagtatga cgtctgtcgc acctgcttga tcgcggccgc gatagctaga
    11761 tcgcgttgct cctcttctcc atccgcgttc caagctgcgg aaaggcaccc ataagcgtac
    11821 gcctggtcga gcaggcgacg cggatcgacg tccagcgcac gagagaatgc gtccgccatc
    11881 tgtgcaatgc gtctaggatc gagacaaagg tcgtctctgt cagccggatc gtagaacata
    11941 ttggcggcgc caaagcccac ttcaccgacc agaccgacgg gatctatcac cagccagccg
    12001 cgactggaga acatgatgtt ttcatgatgc agatcgccat gtagcccacg cagttccgag
    12061 gcattgctca tcatttgatc ggctataatc gccgcgtgga cgtagtcagt ttgacaacct
    12121 gcgttttgat catcgcgcgc ccgctgaaac aaagctgcaa agcgatcccg gatcgggaga
    12181 agggcagaag gcaggggttc ctcagatgcg gcatacagct tcgccattag ttccgctgca
    12241 atttcggtcg cctggtagtc gccgtgctcg gcaacgatgt gagagagcat tcgctccccg
    12301 gcatattcga gcaacatcag attgttctca cgaccgagca accggactgc tcccctccca
    12361 ttgcgccata ccagatagtc ggccccgcgc agttcatcag caatgtcttc tataggtttc
    12421 aatcccttga cgattgcagg agtcccgtct ggcaatgaaa ctttccaaac gaggctggaa
    12481 aaggtgtccg caatgagaac aggttgcgaa acgtgccaat gagcaggaaa aacaggcggc
    12541 atgaacatca accccaagtc agagggtcca atcgcagata gaaggcaagg cgttcgcggt
    12601 cgggggcttc gatccccaat acattgaata ggacagcgaa ggcgcgctct gcttcatctg
    12661 gcgctgccca gttctcttcg gcgttagcaa tcatgagtgc caaatcggca tagcgatctg
    12721 ctgttccgag ccgcccaagg tcgatcagac ccgtgcattg aagagtttta gggtccacca
    12781 tgaagttcgg catgcaggga tcaccatggc aaacaaccat atcggtgcgc tcttggtcga
    12841 gccgcaccgg tagctctcgt tcgacacgag ccaaaagatc gagctgcggc gtactcttgt
    12901 cctcgtccgg taagaagtcg ggattgacgg cattgcggga caccacatca acggcgcgtc
    12961 cgaacattcg cgacagcctg cgctcaaacg gacattgatc aaccgatagg ctgtgaacag
    13021 cgccaagttg ctgccccatt gacggccacg ctttgagcaa atccgctcca gacagatcag
    13081 ccgccggtac tcccggaatt gccgttatca ccaagcatgc accctcctgt tcctcctgcc
    13141 agttgatgac ctcggggcaa gccacacctc gacctttgag ccaaatgagg cggtcacgct
    13201 ctccagcgag ctcaccgcgg cgggaagcag gtgcgatttt cgcgaaggca tgcccgtcac
    13261 cacgtcgaaa aacaaaatca ccagattctc cgcctctgac aggcaaccag tcagaatgcg
    13321 attcaccaaa aaaaatatta gttcgattca atggaggttc cttcagtttt ctgatgaagc
    13381 gcgaatatag agaaatatcc cgaatgtgca gttaacgaat tcttgcggtt tctttcagcg
    13441 ccgccaatac cgccagcccg tcgcgcaagg ggcgcggctc gtgtgtgcgg atgaagtcag
    13501 ctccacctgc ggcggcggca agctctgcag cgagtgtcgc ggccccgaca tcccccggac
    13561 cacggcctgt gagcgcgcgc agaaaggatt tgcgcgaaac agacagaagc accggcaaat
    13621 cgaagcgcag ccgcaattca tcgaaccgcg ccagcaccga gagcgaggtt tcgggagcag
    13681 cccccagaaa aaaccccatg ccgggatcaa ggacaaggcg gttgcgtttg ataccggcac
    13741 ccgtcagcgc cgcgatgcgc gcgtcaaaga acgccgcaat gtgatccatg atgtcgccag
    13801 cgggtgcctc gcgccgatct gcctgcccgt cttgcaccga atgcataacg acgagtttgg
    13861 cagatgattt cgccaattgc ggatagaacg cagcgtctgg aaaaccgcga atatcattga
    13921 gataggccac accacgcgac aaggcatagg cttgcgtcgc gggttgataa ctgtcgagcg
    13981 agacgggaat gccatctgcc ttgagcgcgt ccagcaccgg cgcgatacgc gcgatttctg
    14041 tgtcggacga aacaggcgcg gcgtcgggat tgctggatgc cggaccgagg tcgatcacat
    14101 ctgccccctc ggccatcagc ttacgcgcct gcgcaatggc tgcgtctggc gccagatacc
    14161 ggcctccatc ggagaaactg tccgaggtta tgttgacgat gccgaaaatg atgagcgatt
    14221 tattcatggg ggcttctata ataataataa tcgagcatga gtctcatacg gatgctcggg
    14281 tcgaaaggga atccccaggc gagtaacctg tttgcggtgc tccattagct gcaggagcag
    14341 aatagcatac atctggaagc aaagccagga aagcggccta tggagctgtg cggcagcgct
    14401 cagtaggcaa tttttcaaaa tattgttaag ccttttctga gcatggtatt tttcatggta
    14461 ttaccaatta gcaggaaaat aagccattga atataaaaga taaaaatgtc ttgtttacaa
    14521 tagagtgggt atcggagacg aagaaggaca aggtacatgc tgaccgatac caagctgcgc
    14581 aatctcaagc ccagggacaa actctacaaa gtgaatgacc gggaaggtct ctatgtgggg
    14641 gtcgcctcag aaaacggaat ctatggtcac tcccgttttt gcaacaccga ttttgacgac
    14701 aagttggctt gcttgaatct atccggcgtc tgaatgggat tttattcccg cgcctcgatg
    14761 agttccgcgc ctgatgaacc tccagaaaat atacggcttc aatgagcctt tccgttttac
    14821 aggttcctca acaggccggt gggccgttag tatcatcaat atcagtattc gcaaaaccag
    14881 atgaatgatt gtttaaactg gtgtatttct gcctttatgc ttcgtaagtt tgctgtcgcg
    14941 ccgtcagtgc ccaggctatt ctggccagct tgtttgccag agcacaggtg acgacaaagt
    15001 tgcttttccg acacaacaac tccctgaccc agtcggccaa cttgccagac tggtgttcca
    15061 gtttttgtat gaataccctg gcacactgaa ccaacaaagt tcggatcttt ttgttgcccc
    15121 gcttgctaat ccctaacaat gtcgtccgac ctcccgtgct gtactgtcgg ggtaccagcc
    15181 ctgttgccgc cgcaaagtca cggctgctgg cgtactgctt cccgtcgcca atctcagttg
    15241 aaatagtact ggcagtcagc gttccaacgc agggaatact cagcaagcgc tgtccaacct
    15301 catcttcgtc caactttcgt ttcaactgag attccagatc tttaatctgc tcaacaagat
    15361 agtgataatg ctgttgtaat ttcagcagta actggctgag ataaagaggc aaactactgt
    15421 cctcaagaag ggtactcagt cgactaataa cggcagcacc tcgcggaacg ctgataccaa
    15481 attccagcag aaaagcatgc atctgattag ttgttttcac cttatcctga accagggatt
    15541 cacggacacg atgcagagct cgcattgcct gctgagattc ggttctgggc tgcacgaaac
    15601 gcatagatgg acgtgatgct gcttcacaga tagcttcagc atcaacgaag tcatttttgt
    15661 tgcttttaac gaatgggcgg acaaattgcg gtgatatcag ctttggaaaa tgccctaact
    15721 cttccagctt gcgtgccata aagtgagaac cgccacaggc ttccatcgcg atggttgttg
    15781 ccgggcatgt cgccagaaat tcgattagct ttggtcgggt gaatttttta cggtaaacgg
    15841 ccttcccacg atgatcctga caatgaatat ggaaagagtt cttacccaga tcgataccaa
    15901 taagcgcaat gttttccatg atggttctcc gaatgaaagc ctgtcctcag catagtactg
    15961 ggaaggaggg agtgaccatc tcattaaata aagcacgcta agccggttgc agcggtcgta
    16021 gcggcctgaa cttgcccgcg ccgatcttgg cgctgctgcg ccagaggtaa tcgccggtga
    16081 ggttgatgtg ctcccaaccg agcggcgaca ggtactgcaa cagcgcgtca tcaacggcat
    16141 ggccgttgcc acgcagcgcg tgcgcagccc gttccagata gaccgtgttc cacaacacga
    16201 cggcagccgt taccagattg aggccgctag cccggtagcg ctgctgctcg aaactgcggt
    16261 cgcggatttc acccaggcgg ttgaaaaaca ctgccctggc cagcgcattg cgcgcctcgc
    16321 ccttgttcag gccggcatgc acgcggcggc gcagttccac gctttgcagc cagtccagga
    16381 tgaacagcgt gcgctcgatg cggcccagct cgcggagcgc cacggccagg ccgttctggc
    16441 gtgggtagct gccgagcttt cggagcatca gggaggccgt caccgtgccc tgcttgatcg
    16501 aggtggccag ccgcaggatt tcgtcccaat gggcgcggac gtgcttgatg ttgagcgtgc
    16561 cgccgatcat gggtttcagc gcgtcatagg cggcgtcgcc cttcgggatg tagagcttgg
    16621 tgtcgcccag gtcgcggatg cgcggcgcga agcggaagcc caggaggtgc atcagggcga
    16681 agacgtgatc ggtgaagccc gccgtgtcgg tgtaatgctc ctcgatccgc aagtcggact
    16741 cgtggtacag caggccgtcg agcacgtagg tcgaatcgcg cacgccgacg ttcacgacct
    16801 tggtgtgaaa tggcgcgtac tggtcagaaa tgtgggtgta gaacgtccgc cctgggctgc
    16861 tcccgtattt cgggttgatg tggccggtgc tctcggcctt gctgccggtg cggaagttct
    16921 ggccgtccga cgatgaggtg gtgccgtcgc cccagtgctc ggcgaaggga tggcggaact
    16981 gtgcgttgac cagatcggcc agcgccgccc cgtaggtttc gtcgcggatg tgccaggctt
    17041 gcagccaagc cagcttggcg taggtcgtgc cggggcaaga ctccgccatc ttggtcaggc
    17101 ccaggttgat cgcgtcggcg aggatcgtgg tcagcaacag gttcttgtct ttggccgggt
    17161 cgcccgattt cagatgcgcg aaatgccgag tgaagcccgt ccattcgtcc acctccagca
    17221 gcagttcggt gatcttgacg tgcggcagga tcattgccgt ctggtcgatc agcgcttggg
    17281 cggtgtcggg taccgccgcg tcgagcggcg tgatcttcaa gcctgactcg gtgatgatgg
    17341 cgtccggcag ctcgttggcc gtcgccatac ggttgacggt ggcaagctgt gtttccagca
    17401 gcgtcagccg gtcgttcagg taccggttgc agtcggtggc cacggccagc ggcaattcgc
    17461 tggcctgctt gaggctggcg aatttcgcgg gcggcaccag gtagtcctcg aagtccttga
    17521 actggcgcga cccctgcacc cagatgtcgc cggaacgcaa cgcgttcttc atctccgaca
    17581 gcgcgcacag ttcgtagggc actgttgcaa agttagcgat gaggcagcct tttgtcttat
    17641 tcaaaggcct tacatttcaa aaactctgct taccaggcg
//
LOCUS       DAJVUN010000076        17479 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.076, whole genome shotgun sequence.
ACCESSION   DAJVUN010000076 DAJVUN010000000
VERSION     DAJVUN010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17479
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.076"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(60..1334)
                     /gene="tyrS"
                     /locus_tag="OQQ76_002179"
     CDS             complement(60..1334)
                     /gene="tyrS"
                     /locus_tag="OQQ76_002179"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HCS1968669.1"
                     /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA
                     DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD
                     KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR
                     LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQN
                     QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT
                     FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA
                     LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS
                     DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK"
     gene            complement(1463..2119)
                     /gene="pdxH"
                     /locus_tag="OQQ76_002180"
     CDS             complement(1463..2119)
                     /gene="pdxH"
                     /locus_tag="OQQ76_002180"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HCS1968670.1"
                     /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE
                     AKLADPTAMVVATVDEHAQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL
                     FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
                     LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
                     "
     gene            complement(2178..2507)
                     /gene="mliC"
                     /locus_tag="OQQ76_002181"
     CDS             complement(2178..2507)
                     /gene="mliC"
                     /locus_tag="OQQ76_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-type lysozyme inhibitor"
                     /protein_id="HCS1968671.1"
                     /translation="MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTV
                     KLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC
                     QLQNPQR"
     gene            complement(2605..3714)
                     /gene="anmK"
                     /locus_tag="OQQ76_002182"
     CDS             complement(2605..3714)
                     /gene="anmK"
                     /locus_tag="OQQ76_002182"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HCS1968672.1"
                     /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL
                     KQAVLDICQGQQLTLSQFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVW
                     HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPT
                     ERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK
                     VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV
                     TISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAF
                     AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP"
     gene            3988..4455
                     /gene="slyB"
                     /locus_tag="OQQ76_002183"
     CDS             3988..4455
                     /gene="slyB"
                     /locus_tag="OQQ76_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein SlyB"
                     /protein_id="HCS1968673.1"
                     /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT
                     IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV
                     QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR"
     gene            complement(4502..4936)
                     /gene="slyA"
                     /locus_tag="OQQ76_002184"
     CDS             complement(4502..4936)
                     /gene="slyA"
                     /locus_tag="OQQ76_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416159.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SlyA"
                     /protein_id="HCS1968674.1"
                     /translation="MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLP
                     PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE
                     MEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG"
     gene            5137..5310
                     /locus_tag="OQQ76_002185"
     CDS             5137..5310
                     /locus_tag="OQQ76_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HCS1968675.1"
                     /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL
                     RGWIYAGDIWHPL"
     gene            5376..6233
                     /locus_tag="OQQ76_002186"
     CDS             5376..6233
                     /locus_tag="OQQ76_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310380.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1968676.1"
                     /translation="MSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEK
                     VSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKAN
                     NEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
                     WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKT
                     LRGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSG
                     TTCSIAVGQ"
     gene            6233..8245
                     /locus_tag="OQQ76_002187"
     CDS             6233..8245
                     /locus_tag="OQQ76_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1968677.1"
                     /translation="MNASSWSLRNLPWFKATLAQWRYALRNTIAMCLALTVAYYLNLD
                     EPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSA
                     WLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGI
                     LCGGMMMMILPSSSDATALLTALKNMHAQLLEHASLLWQPETNDAIRAAHEGGIGQIL
                     TMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREIL
                     EQLLTALASSQTDAYTVARIIAPLRPTNVADYRHVAFWQQLRYFCRLYLQSSQELHRL
                     QSGVDDHARLARTSALARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLA
                     AISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLAT
                     MQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFA
                     ILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARR
                     WLLRWGVVLLNCSHVVWQLRDWESSSDPLSRVRDNCISLLRGVMSERGVQQKSLAATL
                     EELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTQAS"
     gene            complement(8246..8767)
                     /gene="sodC"
                     /locus_tag="OQQ76_002188"
     CDS             complement(8246..8767)
                     /gene="sodC"
                     /locus_tag="OQQ76_002188"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC2"
                     /protein_id="HCS1968678.1"
                     /translation="MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTIT
                     ETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHE
                     GPEGAGHLGDLPALVVNNDGKATDAVITPRLKSLDEIKDKALMVHVGGDNMSDQPKPL
                     GGGGERYACGVIK"
     gene            complement(8848..9744)
                     /locus_tag="OQQ76_002189"
     CDS             complement(8848..9744)
                     /locus_tag="OQQ76_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HCS1968679.1"
                     /translation="MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL
                     GVTTVDHADIYGGYQCEAAFGEALKLAPHLCERMEIVSKCGIATTAREENVIGHYITD
                     RDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF
                     TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF
                     NDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE
                     TLKMTRQQWFRIRKAALGYDVP"
     gene            complement(9793..10032)
                     /locus_tag="OQQ76_002190"
     CDS             complement(9793..10032)
                     /locus_tag="OQQ76_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HCS1968680.1"
                     /translation="MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSD
                     GEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF"
     gene            10135..10734
                     /gene="nemR"
                     /locus_tag="OQQ76_002191"
     CDS             10135..10734
                     /gene="nemR"
                     /locus_tag="OQQ76_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416166.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NemR"
                     /protein_id="HCS1968681.1"
                     /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS
                     FYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGT
                     ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA
                     QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV"
     gene            10771..11868
                     /gene="nemA"
                     /locus_tag="OQQ76_002192"
     CDS             10771..11868
                     /gene="nemA"
                     /locus_tag="OQQ76_002192"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-ethylmaleimide reductase"
                     /protein_id="HCS1968682.1"
                     /translation="MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAE
                     YYRQRASAGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQL
                     WHTGRISHASLQPGGQAPVAPSALSAGTRTSLRDENSQAIRVETSMPRALELEEIPGI
                     VNDFRQAIANAREAGFDLVELLSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEV
                     VDAGIEEWGADRIGIRISPIGTFQNTDNGPNEEADTLYLIEQLGKRGIAYLHMSEPDW
                     SGGEPYTDAFREKVRARFHGPIIGAGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLV
                     ARLQRKAELNPQRAESFYGGGAEGYTDYPTL"
     gene            11949..12356
                     /gene="gloA"
                     /locus_tag="OQQ76_002193"
     CDS             11949..12356
                     /gene="gloA"
                     /locus_tag="OQQ76_002193"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HCS1968683.1"
                     /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV
                     GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP
                     VKGGTTVIAFMEDPDGYKIELIEEKDAGRGLGN"
     gene            12459..13106
                     /gene="rnt"
                     /locus_tag="OQQ76_002194"
     CDS             12459..13106
                     /gene="rnt"
                     /locus_tag="OQQ76_002194"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HCS1968684.1"
                     /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL
                     KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV
                     VRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG
                     QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLPAAEEV"
     gene            13199..14514
                     /locus_tag="OQQ76_002195"
                     /pseudo
     CDS             13199..14514
                     /locus_tag="OQQ76_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005153645.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
     gene            15043..17479
                     /locus_tag="OQQ76_002196"
                     /pseudo
     CDS             15043..17479
                     /locus_tag="OQQ76_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001317115.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
BASE COUNT         4033 a         4616 c         4542 g         4288 t
ORIGIN      
        1 tgttccctgt ataaaaacca gggggagtga tttctcactc cccctttcca cttaatgcat
       61 tatttccagc aaatcagaca gtaattcttt ttgccgcgac gcagtaaggt aaaacgacca
      121 aacagacgat cttcttcttt aaagaagtat tcaggatcgg actgtttttc accgttaatg
      181 gtgatggcat tggaggcgat agttttacgc gcctgaccac gggaaggttg cagttcagaa
      241 tcgaccagcg cctgcatcag gtctgcgccc ttttccatct caaccatcgg tacgccgtcc
      301 tgcgccagct gttcgaagtc cgcttcactc agcgcactca aagaaccgct gaacaggcat
      361 tcggtaatac gttttgccgc ctgtaaacct tcttcaccgt gaaccagacg agtcacctgc
      421 tccgccagta catactgggc gcgcggtgct ttaccgctgt ttttatcttc ttcttccagg
      481 gcgttgatct cttcaatgct cataaaggtg aagaacttca ggaagcggta aacgtcggca
      541 tccgcagtgt tgatccagaa ctggtagaat ttgtacgggc tggttttctt cggatccaac
      601 cagactgcgc cgccttcagt tttaccaaat ttggtgccat ctgctttagt gatcagcgga
      661 acggtcaggc caaacacctg attctgatgc agacgacggg tcaggtcgat accagaagtg
      721 atgttacccc actggtcaga accaccaatt tgcagcacca caccgtactg tttgttcaga
      781 caggcgaagt cataaccctg caacaggttg taggaaaact cagtgaacga aatcccctga
      841 tcttcacggt tgagacgctg cttaaccgct tctttgttga tcatctggtt aacggagaag
      901 tgtttgccaa tatcgcgcag gaaggtcagc acattcatat tgccgaacca gtcatagttg
      961 ttcgccgcga tagcagagtt ttctccacag tcgaaatcga ggaacggggc aacctgctta
     1021 cggattttgt ccacccactc ctgaacagtt tcttcggtgt tcagcttacg ctcggcagct
     1081 ttgaagctcg ggtcgccaat cagacccgtc gcgccgccta ccagcgcaac cggcttgtgg
     1141 cccgcctgct ggaagcgttt caggcataac aatggaacaa gatgccccaa atgcaagctg
     1201 tcagcggtag gatcgaagcc gcaatagagc gcgatcgggc cttgcgccag tcgctctgct
     1261 aacgcttcct cgtccgtcac ctgggctacc agcccccgct cttgcaattg tttaatcaag
     1321 ttactgcttg ccatcaaaat ctccatgtat ataacgactg cacctttgcc ggtacacgac
     1381 ttttcgccag atgcgaaaga gacatagaat aaagtgccag aatcaggagt accagcgatt
     1441 aaagcaagat ttttgcatct tttcagggtg caagacgatc aatcttccac gcatcatttt
     1501 ctcgctggta caaaaagcgg tcatgcaggc gatgctcacc gccctgccag aactcaatct
     1561 gttcaaggct gacgcgaaaa ccgccccaaa agctcggcaa tggcacttcg ccctgttgaa
     1621 acttctgctt cagctccagg aatttacttt caaggatacc gcgggcagaa atgcgactgg
     1681 actgcttcga aacccatgca ccaatctggc tatcacgcgg gcggctatga aaatatttca
     1741 tcacttcgag agtcgaaagt cgttctgctt taccgatcac catcacctgg cgttcaaggg
     1801 tatgccacgg gaacagcagg ctaacgcgcg gattattttc aatttgatgt gctttacggc
     1861 taccgaggtt ggtgtaaaac accatgcctt tttcgtcgta atgtttgagt aaaacgatgc
     1921 gttgataagg ctgagcatgt tcatccacgg tagcgaccac catcgcggta gggtctgcca
     1981 gtttggcttc acacgcctga gagagccaac gttcaaaaag ggttaatgga tcggcgggaa
     2041 gatcgcgacg gcgtaacccg cctttggtgt attcacggcg cagatgcgcg atttgctgca
     2101 attcgtcgtt atcagacatg gttttcttta cggattgtca gtgggtgacg ctattgtgcg
     2161 ccgcccctgg aaaaatctca acgctgtgga ttttgtaact gacagttatt caatacgatg
     2221 cggtcgcgtt tatagacagt cgcttcatcg cctttcgacc agaaaacata gattccgtca
     2281 gtgtaacgtg caccagacgc tgaaatgccc tgtttgagat gcagtagttg attatcgtaa
     2341 acaaaactga cttcctggcg cggattattc agtttgaccg tcaacggttt ttcatcacac
     2401 tggtattcca gcgtagcggt ttgcatgtgc tcaaccagtt gattgaacgc gctacagccg
     2461 gtgagaagca ccggcaaaca gatcagtaac agttttttca tagacatttc ccgaagactt
     2521 tcctggtctg gagggcaata cgccctccct aacgttccaa gtgtaacggc agacgcggta
     2581 agaaaaattc agttaactct gatatcacgg gttagcaggg aaaatagccc ccagtaccgt
     2641 ctcctggctt gcgccagtga cggaaggcag atttcctggt aatcccgcca gcgtccgcca
     2701 ggcaagccag gcgaaagcca atgcttccat gtcatcgcca ctaatgccaa cggcatcggt
     2761 ggtggtgact tctgtgcctg gcagtaatgc cgccagacgc gccatgagta gcggattacg
     2821 actacctcca ccacatacca tcaatcgttc gcagccaccg ctcaacaaaa cttgttcaga
     2881 aatggtcacg gcggtgagtt ctgccagtgt ggcctgaaca tcacggggat caacacccgg
     2941 aaaatggcgt aaatggcgct ccagccagcc gtagttaaag tattcgcgtc cggtgctttt
     3001 cggtgcaggt tgcgagaaat atgggtcgct gagcatattt tgcagcagtg ggagaataac
     3061 tttacccgcc cgtgcccact cggcatcttt atcgtaaggt ttaccggcct gacgccagat
     3121 ccaggcatcc atcagcatgt taccaggacc ggtatcgtag ccgccaaccg gctgcccagg
     3181 aatgagcagt gacagattgg cgatgccgcc aatattgagc accattcgtc gctcggttgg
     3241 gtgagccagc aaggcatgat ggaacgcagg taccagcggt gcgccttgtc ctcccaaggc
     3301 aatatcgcga cggcgaaaat caccgacaac cgtaattccg gtgcgtgcca caatttgatt
     3361 gttatcgcca atctgtaaag tgtgtggtgc cacgcccgtc ggttcatgcc agacggtttg
     3421 accgtgacag ccgatcgcaa ctatatctct cgcctgcagg ttttgttcct taagcaaggc
     3481 attgaccgca tcagcaaaaa gtcgcccgag ttgagtatca agctgtccaa actgcgaaag
     3541 tgtaagctgc tggccctggc aaatatccag tacagcctgt ttcagagaca ccgggatcgg
     3601 ccagctcaag cttgccagct gtgcgacccg gtgttcatct attgtcgcca acacaacatc
     3661 aacaccatca aggctggtgc ctgacataac gccaataaag cggcccgatt tcatagttca
     3721 tcctttttca atctgacgtt tgcgcaccac tcaaacataa acttttcgtg aataccatgc
     3781 ggaatgaccg atttttaccg ttggtagtaa aacattatct tcaaatcaat aatcatcatg
     3841 aatgttttgt ttataattgg ttgatcctac tttcattatg atttgctcat atttggtaga
     3901 acatgtaacc atggattcac atatgccata tactttgacc atgagggatg cttgcgtggc
     3961 gtttcatggt gaacaggaga tttttcaatg attaaacgcg tattggttgt ttcaatggta
     4021 ggtctgtctc ttgtcggttg tgttaataac gacaccctgt caggggatgt ttataccgct
     4081 tctgaagcga aacaagtaca aaatgtcagc tatggcacca tcgttaacgt acgtccggta
     4141 cagattcagg gcggtgatga ttccaacgtt atcggtgcaa ttggcggtgc tgttcttggt
     4201 ggtttcctgg ggaatactgt tggtggcgga accgggcgtt ctctggctac tgcagcaggc
     4261 gctgttgcag gtggcgtagc tggtcagggc gtacagagtg caatgaacaa aacgcagggt
     4321 gtcgagctgg aaattcgtaa agacgatggt aataccatca tggtggtaca gaaacaaggc
     4381 aacactcgtt tctctccggg ccaacgtgtc gtactggcca gcaatggcag tcaggtgacc
     4441 gtttctccgc gctaaataag tttgcgtgtg gtcaggttac tgaccacacg cccccttcat
     4501 ttcacccttt ggcctgtaac tcaatgatat tatgctcaag ttttgcgatg agcgtaatca
     4561 gttgctccag ttcctctgcg gagatgccat gtaatatttc cgcgcgggtt ttgttaataa
     4621 cagcttccat ttcgctgatc agtggctctg ccttttccgt cagtttaata cgtttagccc
     4681 gacgatcgct ggcacaagtt tgacgcgaaa ttaacccttt ttcttccagt tggtccagag
     4741 tacggaccag tgatggctgc tcgatgccaa tcgcttttgc cagttgaatt tgcgactggt
     4801 ctggaggtaa ctgatggata ttgtgtaacg taacccaatg ggtttgtgtt aactccagcg
     4861 gtttcaggcg atggtctatc agagcacgcc atatgcgcac caaccgtgcc agatcagaac
     4921 ctagtggcga ttccaatttc atctccttat aattagcttg ctaagatatt atgcggcttt
     4981 tagaatagtg tgcagcaatt ttattgctaa aacaaatgta ttgctgcatt tggttaccgt
     5041 cagacatatt tttcagaaat tgcgcgtaaa tttttcgcac ttaaagaata tttattaatc
     5101 taacgcaata tattcggtcg taaaggaatc tactttgtga agtttatgct caatgcaaca
     5161 ggattgccct tacaagatct ggtgttcggt gcgtccgtct attttcctcc gtttttcaaa
     5221 gccttcgcgt ttggattcgt catctggctt gtcgtacacc gcctgcttcg tggctggatc
     5281 tacgccggtg acatctggca tcccttgtaa atggatttat cgctgtttgc gatttgcgtt
     5341 tgccttgctc tggcaatact gattgcgtgg taactatgtc aattaaaaca attaagtatt
     5401 tctcaacaat cattgtagcg atagttgcgg ttcttgccgg atggtggctg tggaattatt
     5461 acatgcaatc tccgtggaca cgcgacggga aaatacgcgc agaaaaggtt tctatcaccc
     5521 cacaggtgtc gggacgtatt gttgagctga atataaaaga caaccaactg gttaacgcgg
     5581 gggatcttct gctcacgatc gataaaacgc cctttcagat cgccgagctg aacgcacagg
     5641 ctcagctggc gaaagcgcaa tctgacctcg caaaagccaa taacgaagcg aatcgtcgtc
     5701 gtcatctctc acaaaatttt atttctgccg aagaactcga taccgctaac ctcaatgtta
     5761 aagcgatgca ggccagtgtt aatgccgcac aggccacgct gaaacagaca caatggcaac
     5821 tggcgcaaac ggaaattcgc gccccggtga gtggttgggt gactaacctc actacccgca
     5881 tcggcgatta cgctgacacc gggaaaccgc tgtttgccct tgtcgacagc cactcgtttt
     5941 acgtcattgg ttattttgaa gaaaccaagt tgcgccatat ccgcgaaggt gcaccagcac
     6001 aaattaccct ctatagtgat aacaaaacgt tacggggtca cgtttccagt atcggtcggg
     6061 cgatttatga tcaaagcgtt gaaagtgact caagccttat tccggatgtg aaacctaacg
     6121 tcccctgggt tcgtctcgcc caacgcgttc ccgtccgctt tgcgctggat aaagttccag
     6181 gcgatgtcac gctggtgtcg ggcaccacct gtagcattgc cgtaggtcaa taatgaacgc
     6241 atcgtcatgg tccttgcgca atttgccctg gttcaaggcc acgctggcgc aatggcgtta
     6301 tgcgttacgc aataccattg ccatgtgtct ggcgctgacg gttgcctatt atttgaatct
     6361 ggatgaaccc tattgggcga tgacctcggc tgcagtggtt agctttccca ccgttggcgg
     6421 tgtcatcagc aaaagcctcg gacgcatcgc tggcagttta ctgggagcca ttgcggcact
     6481 gcttcttgcc gggcatacgc tcaatgagcc gtggtttttt ctattgagca tgtcggcgtg
     6541 gcttggcttt tgtacctggg cctgtgcgca cttcacgaat aacgtcgcgt atgcatttca
     6601 actggcgggc tacacggctg ccatcatcgc ctttccgatg gttaatatta ctgaggccag
     6661 ccagctgtgg gatatcgctc aggcgcgcgt ttgcgaggtg atagtcggta ttttgtgcgg
     6721 cggcatgatg atgatgatcc tgcctagcag ttccgatgct acagcccttt taaccgcatt
     6781 gaaaaacatg cacgcccaat tactggaaca tgccagttta ctctggcagc ctgaaacaaa
     6841 cgatgccatt cgtgcagcac atgagggggg gattgggcag atactgacca tgaatttgct
     6901 gcgtatccag gctttctgga gccactatcg ttttcgccag caaaacgcgc gccttaatgc
     6961 gctactccac cagcaattac gtatgaccag tgtcatctcc agcctgcgac gtatgttgct
     7021 caactggccc tcaccgccag gtgccacgcg agaaattctc gaacaattgc tgacggcgct
     7081 cgccagttcg caaacagatg cttacaccgt cgcacgtatt atcgccccgc tacgcccgac
     7141 caacgtcgcc gactaccggc acgtcgcctt ctggcagcaa ctacgttatt tttgccgcct
     7201 ttatctgcaa agtagtcagg aattacatcg tctgcaaagc ggtgtagatg atcatgccag
     7261 actcgcacgg acatccgctc tggctcgtca taccgacaac gccgaagcta tgtggagcgg
     7321 gctgcgtaca ttttgtacgt tgatgatgat tggcgcatgg agtattgcat cgcaatggga
     7381 tgccggtgcc aatgcattaa cgctggcagc aattagctgc gtactctact ccgccgtcgc
     7441 agcaccgttt aagtcgttgt cactgctgat gcgcacgctg gtgttacttt cgctattcag
     7501 ctttgtggtc aaatttggcc tgatggtcca gattagcgat ctgtggcaat ttttactgtt
     7561 tctctttcca ctgctggcga caatgcagct tcttaaattg cagatgccca aatttgccgc
     7621 actgtggggg caactgattg tttttatggg ttcgtttatc gctgtcacta atcccccggt
     7681 gtatgatttt gctgattttc ttaacgataa tctggcaaaa atcgttggcg ttgcgctggc
     7741 ttggctagcg ttcgccattc tgcgtccagg atcggatgct cgtaaaagcc gccgccatat
     7801 tcgcgcgctg cgccgggatt ttgtcgatca gctaagccgc catccaacac tgagtgaaag
     7861 cgaatttgaa tcgctcactt atcatcacgt cagtcagttg agtaacagcc aggatgcgct
     7921 ggctcgccgt tggttattac gctggggtgt agtgctgctg aactgttctc atgttgtctg
     7981 gcaattgcgc gactgggaat cgagttccga tccgttatcg cgagtacggg ataactgtat
     8041 ttcactgttg cggggagtga tgagtgagcg tggcgttcag caaaaatcac tggcggccac
     8101 acttgaagaa ttacagcgga tttgcgacag ccttgcccgt catcatcaac ctgccgcccg
     8161 tgagctggcg gcaattgtct ggcggctgta ctgctcgctt tcgcaacttg agcaagcacc
     8221 accgcaaggt acgcaggcct cttaattact taattacacc acaggcatag cgttcaccgc
     8281 caccgcccag cggtttaggt tgatcggaca tattatcgcc gccaacgtgg accatcagcg
     8341 ctttgtcttt gatttcatcc agtgatttca gacgaggcgt gatgacggca tcggtagctt
     8401 tgccgtcatt attgacgacc agtgcaggca gatcgcctaa atgcccggca ccttctggcc
     8461 cttcatgttt accggtattt tgtggatcaa gatgcccgcc tgcggattcc gcggcgctgg
     8521 ctttgccatc tttggtggct ggctggcagc ttcctttggc atgaatatgg aagccatgtt
     8581 caccgggggg taatgctttc agatcgggcg aaaactccag acctttatcg gtttcagtaa
     8641 tggtgacgct accaattgac tgccctaccc cttgcgacgt gacgaggttc atctcgactt
     8701 tttcactggc agcttgtgcg ccggttgcaa caaccagcgc cagaatagcc agactaaaac
     8761 gtttcatagg acctccgttc attgtgcatt cctgaataag tgtaaaccag tgacacattt
     8821 ttgaacggcg gctattccta aaagtgctta cggtacgtcg taccccagtg ccgctttacg
     8881 gatacgaaac cattgttgac gggtcatttt cagtgtttct gcttcgacag ctgcccgtac
     8941 gcgctcaatt ttacctgaac cgataattgg cagcggctgc gatggtaaac gtaataccca
     9001 ggcgtaaacc acctgttcaa tcgagcccgc gtttaactcc tctgccacca cagccagttc
     9061 atcacgcagc ggctggaaat aatcatcatt aaacagacga ccaccaccaa ggcaggacca
     9121 cgccatcgga cgaacacgca gttgttgtag ttggtcgagc gtgccatcca gcagtaacgg
     9181 ctgatgcacc ggggatattt ccacctgatt agtggcaagg gtaaacggca gacgtgattg
     9241 caacagggca aattgcgcag gcgtaaagtt cgatacgcca aaatgacgca ctttgccgct
     9301 ctgatgcaga tgtttgaacg cgtccgccac ttcatcggca tccattaacg ggtctggtcg
     9361 gtggattaac agcagatcca gatgatcggt cgcgagatta attagcgact gttcggcgct
     9421 cttaatgatg tgatcgcggt cagtgatgta atgaccaatg acgttttctt cacgcgcggt
     9481 cgtcgcgata ccgcatttac tgacgatttc catccgttca cacaggtgag gtgccagttt
     9541 cagtgcctcg ccaaacgccg cttcgcactg atagccacca taaatatcag catggtccac
     9601 ggtggtcacg ccgagatcca gatgctcttc aataaaactg accagctggc gggcggacat
     9661 attccagtcc atcaatcgcc agtagcccat cacaaaacgg gaaaactccg ggccttgcgg
     9721 cgcaatagta atacgctgaa ccataatcgc ttcctcttat cagatatgag aggagtatac
     9781 gcaagattag gttcaaaaga gtgatggttg ctccggttcg tctgatgacg ctggcttatt
     9841 tgcgcgtaat ttgcgcatta atcgctgccg acaaaggcgc agcacctctt gtttttctcc
     9901 atcgctcatt ttattccagt taaaacgctc atcccgacta cgaaaacagc cgcgacaaaa
     9961 cccgcgttcg tcagactggc aaattccccg gcacgggctc tggacgggaa agaactctaa
    10021 ttgctccgcc acttcgccct cctcagataa gattattacc atcattgaag ctgttaatgt
    10081 ccaaagtagc aactttgctc gcactagacc gactggtctg ctacactcca acgcatgaac
    10141 aaacacaccg aacatgatac tcgcgaacat ctcctggcga cgggcgagca actttgcctg
    10201 caacgtggat tcaccgggat ggggctaagc gaattactaa aaaccgctga agtgccgaaa
    10261 gggtccttct atcactactt tcgctctaaa gaagcgtttg gcgttgccat gcttgagcgt
    10321 cattacgccg catatcacca gcggctgact gagttgctgc aatccggcga aggtaactac
    10381 cgcgaccgca tactggctta ttaccagcaa acactgaacc agttttgcca acatggaacc
    10441 atcagtggtt gcctgacagt aaaactctct gccgaagtgt gcgatctgtc agaagatatg
    10501 cgcagcgcga tggataaagg tgctcgcggc gtgatcgccc tgctctctca ggcgctggaa
    10561 aatggccgtg agaaccattg tttaaccttt tgtggcgaac cgctacaaca ggcacaagtg
    10621 ctttacgcac tatggctggg tgcgaatctg caggccaaaa tttcgcgcag tttcgagcca
    10681 ctggaaaacg cgctggccca tgtaaaaaac attattgcga cgcctgccgt ttagcaggca
    10741 ttttttatca ccagacgacc gggagccttt atgtcatctg aaaaactgta ttccccactg
    10801 aaagtgggcg cgatcacggc ggcaaaccgt atttttatgg caccgctgac gcgtctgcgc
    10861 agtattgaac cgggtgacat tcctaccccg ttgatggcgg aatactatcg ccaacgtgcc
    10921 agtgccggtt tgattattag tgaagccacg caaatttctg cccaggcaaa aggatatgca
    10981 ggtgcgcctg gcatccatag tccggagcaa attgccgcat ggaaaaaaat caccgctggc
    11041 gttcatgctg aaaatggtca tatggccgtg cagctgtggc acaccggacg catttctcac
    11101 gccagcctgc aacctggcgg tcaggcaccg gtagcgcctt cagcacttag cgcgggaaca
    11161 cgtacttctc tgcgcgatga aaatagtcag gcgatccgtg ttgaaacatc catgccgcgt
    11221 gcgcttgaac tagaagagat tccaggtatc gtcaatgatt tccgtcaggc cattgctaac
    11281 gcgcgtgaag ccggttttga tctggtagag ctcctctctg ctcacggtta tttgctgcat
    11341 cagttccttt ctccttcttc aaaccatcgt accgatcagt acggcggcag cgtggaaaat
    11401 cgcgcacgtc tggtactgga agtggtcgat gccgggattg aagaatgggg tgccgatcgc
    11461 attggcattc gcatttcgcc aatcggtact ttccagaaca cggataacgg cccgaatgaa
    11521 gaagccgata cactgtatct gattgaacaa ctgggtaaac gcggcattgc ttatctgcat
    11581 atgtcagaac cagattggtc ggggggtgaa ccgtatactg atgcgttccg cgaaaaagta
    11641 cgcgcccgtt tccacggtcc gattatcggc gcaggtgcat acacagtaga aaaagctgaa
    11701 acgctgatcg gcaaagggtt aattgatgcg gtggcatttg gtcgtgactg gattgcgaac
    11761 ccggatctgg tcgcccgctt gcagcgcaaa gctgagctta acccacagcg tgccgaaagt
    11821 ttctacggtg gcggcgcgga aggctatacc gattacccga cgttgtaatc caacattgcg
    11881 agcggcgtaa agccgccgct atactaaaac aacattttga atctgttagc cattttgagg
    11941 ataaaaagat gcgtcttctt cataccatgc tgcgcgttgg cgatttgcaa cgctccatcg
    12001 atttttatac caaagtgctg ggcatgaaac tgctgcgtac cagcgaaaac ccggaataca
    12061 aatactcact ggcgtttgtt ggctacggcc cggaaaccga agaagcggtg attgaactga
    12121 cctacaactg gggcgtggat aaatacgaac tcggcactgc ttatggtcac atcgcgctta
    12181 gcgtagataa cgccgctgaa gcgtgcgaaa aaatccgtca aaacgggggt aacgtgaccc
    12241 gtgaagcggg tccggtaaaa ggcggtacta cggttatcgc gtttatggaa gatccggacg
    12301 gttacaaaat tgagttaatc gaagagaaag acgccggtcg cggtctgggc aactaatctc
    12361 ctgccgggcg tgaactcatc gcgcccgcat ctttactgca tcgacaagta atatttgtca
    12421 taatgcgcgc tgcaatttat ccgtattaag agaatcagat gtccgataac gctcaactta
    12481 ccggtctgtg cgaccgtttt cgtggttttt atcctgttgt gatcgatgtt gaaacagccg
    12541 gatttaacgc caaaaccgat gcgctgcttg agattgccgc catcaccctg aaaatggatg
    12601 aacaaggctg gctgatgccg gacaccacat tacatttcca cgtcgaacca tttgtcggcg
    12661 caaatttgca accagaagcc ctcgccttca acggcattga cccgaacgat cccgatcgcg
    12721 gcgcggtcag cgaatacgag gcgctgcacg aaatttttaa agttgtacgt aaaggtatta
    12781 aagcgagcgg ctgtaaccgc gccattatgg tggcgcacaa tgccaatttt gatcacagct
    12841 ttatgatggc cgccgcagaa cgcgcctcac ttaaacgtaa cccgttccac cctttcgcca
    12901 cttttgacac tgctgcactg gccgggctgg cactcggaca aaccgtattg tcaaaggctt
    12961 gccagaccgc tggcatggac ttcgacagca cccaggcgca ctccgcgctg tacgacaccg
    13021 aacgcactgc tgtgctgttt tgtgaaatcg tcaaccgctg gaaacgtctg ggaggctggc
    13081 cgctacctgc cgccgaagag gtgtaatcga gtcgatgcct gatgacatgc aatgattcag
    13141 gcatctatag tgaggctatt ccacgcatcc tgcatgatat tcacggggaa tagcgttaat
    13201 ggcagataat ccagaccctt catcgctcct gccggacgtg ttttcaccgg cgacccgcga
    13261 ctggtttctt cgcgccttta aacagccgac cgctgtccag tcgcaaacct ggcatgtggc
    13321 ggcgcgaagc gaacatgcgc tggtgattgc accgaccggc tccgggaaaa cgctggcagc
    13381 atttctctac gccctcgatc ggctcttccg cgaaggcggc gaagataccc gcgaggcgca
    13441 taagcgtaaa acctcacgca tcctctatat ttcaccgata aaagctctgg gcaccgacgt
    13501 tcagcgcaac ttgcagctcc cgttgaaggg tattgccgat gaacggcggc ggcgcggcga
    13561 aacggtaatt attgatgaag tccacgcggt agcgggcagt aaacgtggtg cgcatctggc
    13621 gttaaatctg gagcggctcg atgcgctgct ccacacctca gcacagcgaa ttggcctttc
    13681 tgccactgtg cgctcagcca gcgatgtggc agcctttctt ggtggcgatc gcccggttac
    13741 ggtagtcaac ccgcccgcaa tgcgccatcc gcagatacga attgtcgtac cggtcgccaa
    13801 tatggatgat gtctcatcgg tcgccagcag caccggcgaa gacagccatg ccggccggga
    13861 aggctccatc tggccatata ttgaaacggg tatccttgat gaagtgttgc gccatcgctc
    13921 gaccattgtc tttactaatt cacgtgggct ggcggaaaaa ctgacggcac gattaaatga
    13981 gctttacgcc gcacgcttac agcgttcccc gtctatcgcc gttgatgcgg cccatttcga
    14041 gtcgacctcc ggcgcaacct ctaaccgtgt acaaagtagc gacgttttta ttgcccgctc
    14101 acaccacggc tccgtctcta aagaacaacg agcaatcacc gagcaggcgc tgaaatcggg
    14161 tgagttacgc tgcgtggtcg caacctccag tctcgaactg gggattgata tgggcgcagt
    14221 ggatctggtg attcaggtgg caacgccgct ttctgttgcc agtgggttac aacgcattgg
    14281 tcgcgccgga catcaggttg gcggtgtatc taaagggctg tttttccctc gtacccggcg
    14341 tgacttagtc gattccgcag tcattgtaga gtgtatgttc gcaggcaggc tggaaaacct
    14401 gacaccccgc ataatccact cgacgtcctt gcgcagcaaa ccgttgccgc cgcggcgatg
    14461 gaggcattac aggtagacga atggtactcc cgcgtacgcc gtgccgcacc gtggaaagat
    14521 ctgccaagac gtgtttttga cgccacgctg gatatgcttt ccgggcgcta tccctctggc
    14581 gatttttctg cttttcgccc caaactggtc tggaacaggg agaccgggat attgaccgcc
    14641 cgacctggcg ctcaattgtt ggcggttacc agcggcggca ccattccgga tcgtggcatg
    14701 tatagcgtgt tattacccga aggtgaagaa aaggccggtt cgcggcgggt gggtgaactg
    14761 gatgaggaga tggtatatga gtcgcgggtg aacgacatta tcactctcga cgctacctca
    14821 tggcggatcc agcaaatcac ccgcgatcag gtgattgtga ctcctgctcc gggtcgttct
    14881 gcccggctcc ccttctggca tggtgaaggt aacggacgtc cggctgaatt aggcgagatg
    14941 atcggcgatt ttcttcattt actggcggat ggcgcgttct tttccgggac tattcccccg
    15001 tggctggcag aagaaaatac gaacgccaat attcaggggt tgattgacga gcaacgcaac
    15061 gcgacgggca tcgttccggg gagtcgccat ctggtcctcg aacggtgccg tgatgaaatt
    15121 ggcgactggc gtattatttt gcactctccc tatggaagac gggtgcatga accctgggcg
    15181 ctggcgattg ccgggcgaat acatgcccta tggggcgctg acgcgtctgt ggtcgccagt
    15241 gatgacggca ttgttgcgcg cattcctgac actgatggta aattgcccga cgccgcgatt
    15301 tttttgtttg aaccagaaaa gttgctgcaa attgtccgcg aggcggtagg cagctcggca
    15361 cttttcgccg cccgttttcg cgaatgcgcc gcgcgggcat tattaatgcc ggggcgcact
    15421 ccgggccatc gcaccccgct ttggcaacaa cggctgcgcg ccagtcagtt gctggaaatc
    15481 gctcagggat atccagattt tccggtcatt ctcgaaatcc tacgcgaatg tctgcaagat
    15541 gtttatgatc ttcccgcact ggaacgtttg atgcgtcgcc tgaacggtgg cgaaattcaa
    15601 atatccgatg taacgaccac tacgccctcg cctttcgcca caagtttatt gttcggctat
    15661 gtcgcggaat ttatgtacca gagcgacgcc ccgctggcag agcgccgggc atccgtactg
    15721 tcgctggaca gcgagttact gcgcaatcta ctcggacagg tcgatccggg ggaattactc
    15781 gacccgcagg tcattcgcca ggtggaagaa gagttgcaac gactggctcc tggcagaaga
    15841 gcgaaaggtg aagaaggatt gttcgacctg ctgcgcgaac tggggccaat gaccgttgaa
    15901 gacctggcgc aacggcatac aggcagcagt gaagaggttg cgtcgtatct ggaaaatctt
    15961 cttgcagtaa aacgaatctt cccagcgatg attagcggac aggagcgtct tgcctgtatg
    16021 gatgatgccg ccaggctgcg tgatgccctc ggcgtacgac taccagagtc attgccagag
    16081 atttatttac atagagtcag ttacccgctt cgcgacctct ttctgcgcta tctccgggct
    16141 catgctctgg tcacggctga acaactggct catgagttta gtctcggtat tgccattgtc
    16201 gaagagcagc ttcagcaact gcgtgaacag ggtctggtga tgaatctgca acaagacatc
    16261 tgggtgagcg atgaagtatt tcgtcgtctg cgtttgcgct cgctgcaagc cgccagagaa
    16321 gcgacgcgtc ccgttgcagc cacgacctag cgcgattgct gctggaacgt cagggcgtat
    16381 tacccgccac cgatggtagc ccggcgctct ttgcctcaac atcgccaggc gtttatgagg
    16441 gcgtagatgg cgtgatgcgg gtgatcgaac agcttgccgg agtcggttta cccgcctcac
    16501 tctgggaaag ccagatcctg cctgcccgcg tacgcgacta ttcgtcagaa atgctcgatg
    16561 aattactggc aaccggtgcg gttatctggt cggggcaaaa aaaactgggt gaagatgacg
    16621 gcctggtggc actgcatcta caggaatatg ctgcagaatc gttcactccc gccgaagcgg
    16681 atcaggcgaa tcgttcggcg ctgcaacaag cgatagtcgc tgttctggct gacggaggag
    16741 cctggtttgc acaacaaatc agccaacgga tacgcgacaa aatcggcgaa tcggttgatc
    16801 tctctgccct gcaagaggcg ttatgggcgc tggtctggca aggcgtcatc accagcgaca
    16861 tttgggcacc gttacgcgcc ctcacccgca gcagttccag cgcacgcacc tcaactcgcc
    16921 gcagtcaccg ggctcgtcgt ggacgtcctg tctatgcgca acccgtctcg ccgctggtat
    16981 cttacaacac accaaatctg gctggacgct ggtcgttatt gcaggtggag ccactaaacg
    17041 ataccgaaag gatgctggcg ctggcggaaa atatgctcga ccgctacggc atcatcagtc
    17101 gtcaggcggt gatagccgaa aatatccctg gcgggtttcc atcgatgcaa acgctttgtc
    17161 gaagtatgga agactccggg cgaattatgc gaggtcgttt tgtagaaggt ctgggtggcg
    17221 cgcaattcgc tgaacgtctg actattgacc gatggcgcga tctggcgaca caagccacgc
    17281 aaacgcgcca ctatacacca gtggcgctct ctgccaacga tccggctaat gtgtggggaa
    17341 atcttctgcc ctggcctgca catccggcaa cgctggttcc aacgcgtcgg gcgggtgcgc
    17401 tggtggtcgt ttctagcggc aaattgttac tctatctggc gcaaggtggc aaaaaaatgc
    17461 tggtctggca ggaaaaaga
//
LOCUS       DAJVUN010000077        17469 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.077, whole genome shotgun sequence.
ACCESSION   DAJVUN010000077 DAJVUN010000000
VERSION     DAJVUN010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17469
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.077"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(36..2633)
                     /gene="topA"
                     /locus_tag="OQQ76_002197"
     CDS             complement(36..2633)
                     /gene="topA"
                     /locus_tag="OQQ76_002197"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HCS1968685.1"
                     /translation="MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAA
                     KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK
                     ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID
                     RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE
                     FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT
                     TTKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM
                     VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ
                     LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL
                     PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG
                     YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH
                     FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL
                     PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV
                     CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR
                     KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE
                     ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYV
                     DGKWVEGKK"
     gene            3014..3265
                     /locus_tag="OQQ76_002198"
     CDS             3014..3265
                     /locus_tag="OQQ76_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciN family protein"
                     /protein_id="HCS1968686.1"
                     /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV
                     FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD"
     gene            complement(3301..4350)
                     /gene="sohB"
                     /locus_tag="OQQ76_002199"
     CDS             complement(3301..4350)
                     /gene="sohB"
                     /locus_tag="OQQ76_002199"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HCS1968687.1"
                     /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV
                     NNLSEQYKEMKEELAAALMGSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR
                     VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR
                     LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKY
                     IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT
                     GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESAD
                     RLLLRWWQRGQKPLM"
     gene            4570..5328
                     /locus_tag="OQQ76_002200"
     CDS             4570..5328
                     /locus_tag="OQQ76_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HCS1968688.1"
                     /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR
                     NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGL
                     LGDICPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA
                     NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA
                     DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ"
     gene            5325..5916
                     /gene="cobO"
                     /locus_tag="OQQ76_002201"
                     /pseudo
     CDS             5325..5916
                     /gene="cobO"
                     /locus_tag="OQQ76_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
     gene            complement(5956..6828)
                     /gene="rluB"
                     /locus_tag="OQQ76_002202"
     CDS             complement(5956..6828)
                     /gene="rluB"
                     /locus_tag="OQQ76_002202"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HCS1968689.1"
                     /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV
                     TPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR
                     WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
                     QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI
                     PLPKGLPRGGWTELDLAQTNYLRELVGLPPETSSKVAVEKDRRRMKANQIRRAVKRHS
                     QVSGGRRSGGRNNG"
     gene            complement(7039..8934)
                     /locus_tag="OQQ76_002203"
     CDS             complement(7039..8934)
                     /locus_tag="OQQ76_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2207 domain-containing protein"
                     /protein_id="HCS1968690.1"
                     /translation="MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATL
                     QPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEP
                     WHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF
                     EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVL
                     YRWPHALLSNAPAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVD
                     VIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQYDKNQQILICV
                     NEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLF
                     YRPDTFLQWGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFAR
                     DDDKPCVNRAIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFSAVCLTGYLTGM
                     GYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISAN
                     LGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAG
                     GGGGGGW"
     gene            complement(8962..9582)
                     /locus_tag="OQQ76_002204"
     CDS             complement(8962..9582)
                     /locus_tag="OQQ76_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HCS1968691.1"
                     /translation="MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKI
                     EDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILK
                     GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI
                     KDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL"
     gene            complement(9579..10460)
                     /gene="yciV"
                     /locus_tag="OQQ76_002205"
     CDS             complement(9579..10460)
                     /gene="yciV"
                     /locus_tag="OQQ76_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exoribonuclease"
                     /protein_id="HCS1968692.1"
                     /translation="MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITD
                     HDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQ
                     QTERRNQRAQQIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADV
                     FKKYLARGKTGYVSPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAE
                     HHGDAMEVAQCQQSPNERTQLTTLARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVE
                     GVWQLWEQPQNTTEREL"
     gene            10598..10642
                     /gene="trpL"
                     /locus_tag="OQQ76_002206"
     CDS             10598..10642
                     /gene="trpL"
                     /locus_tag="OQQ76_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon leader peptide"
                     /protein_id="HCS1968693.1"
                     /translation="MKAIFVLKAWWRTS"
     misc_feature    10619..10712
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00513"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Trp leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00513"
     gene            10734..12296
                     /gene="trpE"
                     /locus_tag="OQQ76_002207"
     CDS             10734..12296
                     /gene="trpE"
                     /locus_tag="OQQ76_002207"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HCS1968694.1"
                     /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADID
                     SKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLTLLDNALPAGVENEQSPNCRV
                     LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED
                     LPQLSAENNCPDFCFYLAETLMVIDHQKKNTRIQASLFAPNEEEKQRLTARLNDLRQQ
                     LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRTGEIFQVVPSRRFSLPCPS
                     PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR
                     RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR
                     YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG
                     GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR
                     AIATAHHAQETF"
     gene            12296..13891
                     /gene="trpD"
                     /locus_tag="OQQ76_002208"
     CDS             12296..13891
                     /gene="trpD"
                     /locus_tag="OQQ76_002208"
                     /EC_number="2.4.2.18"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase glutamate
                     amidotransferase component TrpG/anthranilate
                     phosphoribosyltransferase TrpD"
                     /protein_id="HCS1968695.1"
                     /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL
                     ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG
                     EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD
                     ADRVCGFQFHPESILTTQGARLLEQTLAWAQRKLEPTNTLQPILEKLYQAQTLSQQES
                     HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI
                     VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD
                     KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV
                     YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF
                     GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA
                     QTVLEVLRSGSAYDRVTALAARG"
     gene            13892..15253
                     /gene="trpCF"
                     /locus_tag="OQQ76_002209"
     CDS             13892..15253
                     /gene="trpCF"
                     /locus_tag="OQQ76_002209"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HCS1968696.1"
                     /translation="MMQTVLAKIVADKAIWVETRKQQQPLASFQNEVQPSTRHFYDAL
                     QGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFDFLP
                     IVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMG
                     GLTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGI
                     NTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG
                     AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQL
                     HGNEDQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDW
                     SLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTL
                     RAY"
     gene            15265..16458
                     /gene="trpB"
                     /locus_tag="OQQ76_002210"
     CDS             15265..16458
                     /gene="trpB"
                     /locus_tag="OQQ76_002210"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HCS1968697.1"
                     /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ
                     FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG
                     KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH
                     SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVCEFQRMIGEETKAQILE
                     REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV
                     GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE
                     AFKTLCLHEGIIPALESSHALAHALKMMRETPEKEQLLVVNLSGRGDKDIFTVHDILK
                     ARGEI"
     gene            16458..17264
                     /gene="trpA"
                     /locus_tag="OQQ76_002211"
     CDS             16458..17264
                     /gene="trpA"
                     /locus_tag="OQQ76_002211"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HCS1968698.1"
                     /translation="MERYESLFAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAG
                     ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY
                     ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD
                     DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD
                     QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATSS"
BASE COUNT         4218 a         4666 c         4343 g         4242 t
ORIGIN      
        1 accctttgtt tataaaaacc tgacagaatt aaaggttatt tttttccttc aacccatttg
       61 ccatcaacat aaaatgctga ccagccagtc gcctttccgt ctttttccga agagacatat
      121 tgctgtttgg ttttacggct aaagcgaacc atggtcttat taccttccgg atcctgctgt
      181 ggcgcatcgg ccagataacg cagtttttcc ggcagacggt cgcggaagcg ataaagctct
      241 tccaccagtg gcgcacgcgt ttcacgcgat ttcgggaaag tgttggcagc caggaaaaca
      301 cccgcagcgc cgtcacgcag cacgaaataa gcatctgatt tttcgcacgg cagctcaggt
      361 aatggcaccg gatcttcttt cggtggtgcc acttcgccgt tacgtaaaat cttacgtgtg
      421 tttttacact cttcgttggt gcaggccatg tatttaccga aacgccccat tttcaggtgc
      481 atttcagagc cacatttttc acactcaacg atcgggccgt cataaccttt aatgcggaat
      541 tcgccctctt cgatctcgta accgtcgcag gttgggttat taccacagac atgcaactta
      601 cgtttcggat cgatgagata gctgtccatc gccgtgccgc atttcgggca acgacgtttt
      661 gcgcgcagcg cgttggtttc agcgtcttcg ccttccagta cgttcagcac ttcgttttcc
      721 ggcaccaggt taatggtggt tttgcaacgc tctttcggcg gcagcgcata accagaacag
      781 ccaaggaata ccccggtgct cgctgtgcga atccccattt tgcgaccaca agtcgggcag
      841 tcaatgctgg tcagaaccat ctggttcggg cgcataccac cctcttccgg atctttttca
      901 gctttatcta actgctgggt gaaatccgag aagaagtgat ccagtacagc tttccactct
      961 gcttcgtgat ttgccacctg gtcgaggctg ttttccatct gtgcggtgaa gtcgtagttc
     1021 attaactcgc ggaaattttc ttcaaggcga tcggtgacga tttcgcccat tttttccgca
     1081 tagaaacgac gattttctac tcgcacgtag ccacgatcct gaatggtcga aatgatcgac
     1141 gcataggtag acggacgacc gataccgcgt ttttccagct ctttaaccag cgatgcttca
     1201 ctgaaacggg ctggcggctt ggtaaagtgc tgggctggtg taagttcaac gagcgtcaga
     1261 gcatcgcctt tattaactgc tggtaagatg cgatcttcat cgcctttacg caacgcaggc
     1321 atcacttttg tccagccatc aaaacgcaaa atacgaccgc gtgctttcag gcggaaatcg
     1381 cccgcaccaa cggtcagcgt cgtggagtca tatttcgctg gggtcatctg gcaggctacg
     1441 aactgacgcc agattaactg gtacagtttc tgcgcatctg cttccatatc cttcagcgat
     1501 tccgccatca cattgacgtc agaaggacga atcgcttcgt gcgcttcctg tgagttttct
     1561 ttgctggcgt actgattcgg actttccggc agatatttct taccaaaatt atcgctgata
     1621 taaccgcgaa ccatatttac cgcgtcctga ctcaggttag tggagtcggt acgcatgtaa
     1681 gtgatatagc ctgcttcata caaacgctgc gccatcatca tggttttttt cacgccaaat
     1741 ccaagacggg tgctggcagc ttgttgcagc gtagaggtaa taaaaggagc gccaggttta
     1801 gtggttgtcg gtttgtcttc acgttccagc acgctgtagc gcgctttttc cagcagactt
     1861 accgcagcct gagtttgttc tttgttgacc ggacggaacg gtttgtcgtt ctgatgagtc
     1921 acctgtaacg ccaacgcttc accagatggc gtggtcgtgc tggcatcgac ttcccagaac
     1981 tcttccggca cgaacgcttt aatttcacgc tcacgctcga ccaccaggcg aaccgccacc
     2041 gactgcacac gaccggcaga cagaccacga gcgatctttt tccatagcag cggcgaaacc
     2101 atatacccca ccacgcggtc cataaagcga cgcgcctgct gggcattaac acgatcaata
     2161 ttcagctcac ccggtttgtt aaatgcctgg cggatcgcgt ttttagtaat ttcgttaaac
     2221 accactcggc tatagcgcgc atcatcaccc ccaatcactt cccgcaggtg ccatgcaatg
     2281 gcttcccctt cgcggtcaag gtcggttgcg agatagatgt ggtcggcttt ttcagccagt
     2341 tgtttcagtt cagagacgac cttctcttta ccaggcaaca cttcatagtg cgcctcccaa
     2401 ttgtgccacg ggtcaacccc catacggttg acgagagcgc cacgttcatc ctttttaggc
     2461 tttttagccg tcttggtgga ggtagagtcg gcactctttt tggcagctga gccactggtc
     2521 ggcaaatcgc ggatgtgacc gacgctggat ttcaccacgt agtcactacc cagatacttg
     2581 ttgatcgttt tggcttttgc cggggactca acgatgacaa gagctttacc catattcacc
     2641 ttacctaatt tgattcttcc aggaatgcgt cgcacgttga taaaccttcc actggcaacg
     2701 agttaccgat atggactcgt tctctgcgga tatcaacccc ttgtcgtgac tctgttcacg
     2761 aaaattcagg tgactgagtt aacaggtctt ggcctacagg cgctatagca cgacggaatt
     2821 ttggtcgaat gtcaagcaaa tctattgcca gattgacgaa agtcgtcaca ctgtacctga
     2881 taaaatccga tacgcaactt tattagcatg caaaatccaa agttgccagt aaggcgctct
     2941 tgccacccgc gtggtatatt tgtctgcaag ccatgcctgg cgtagactaa tgtccttgtt
     3001 taaggagtaa ataatgaaca aagagacaca acccatcgac cgcgaaacgc tgttgaaaga
     3061 ggccaacaaa atcattcgtg agcatgagga tacgctcgca gggattgaag ccaccggcgt
     3121 cacgcagcgt aatggcgtgc tggtatttac cggcgactac tttttagatg aacaaggatt
     3181 gccaacagcc aaaagcaccg cggtgtttaa tatgttcaaa cacctggccc atgtgctttc
     3241 agaaaaatat catctggttg attaaagcaa aacgcgaggt cttagcctcg cgtttgtctt
     3301 ttacatcaat ggcttttgac cccgctgcca ccagcgtagc aacaatcgat cggcgctctc
     3361 tgccgcgctg ccggtgaatc ggtcaatgag tcgtttacgc tgcatatagc gtacattaac
     3421 cacttcacgg ccttccatca ggctaagaat aacttcatca ctggtgttga tttcatcaac
     3481 caggcctttc tctaccgcct gttgtccgta ccagtgttca cctgttgcca cctgttcaat
     3541 atccagagac ggacgcatac gcttcacaaa atctttaaac aactgatgcg tttcgttcaa
     3601 ctcttcgcgg aatttctccc gcccttcttc ggtattttca cccagcaacg tcagagtacg
     3661 cttatactgc ccggcagtgt gcagttcgat atcaatatat ttgcttttca ggaagcggtt
     3721 aaagttgggc atttgcgcca ccaccccaat ggaacccaca atagcaaacg gtgcggaaac
     3781 aattttgtcc gccacacagg ccatcatgta accgccgctg gcagcgactt tgtctaccgt
     3841 aacagttaaa ggaatgtttt tatcacgcag acgctgcagc tgcgaagccg ccaacccgta
     3901 accatgcacc atgccaccag ggctttccag acggagcaca acctgatcct gcggtttgaa
     3961 tgctgcgagt accgccgtta tctcttcacg tagcgagttc acttcatggg cgtccatgct
     4021 gcctttaaaa tccagcaccc agacgcgagg tttactgtca gttgccacct cgcccagttt
     4081 ggctttcgct tttgctgctt tcgcttcttg cttgtgcttt ttcttctgcg ctttgtgcca
     4141 ctgtttttgc tgatgtgagc ccatcagcgc cgcggccagt tcttctttca tctccttata
     4201 ctgttcgctg agattgttga cccgtaactc gccacgctgg cgtttattac gttgagcaac
     4261 attgacaata atggcggcaa tcgccgcaat cgctagcaca acggtaacga ttttcgccaa
     4321 aaacaaacca tattcagaca acaattccac gagtccccac cttggttaaa caacgctttg
     4381 gctcacagtt tacaacaggc atgttaagcc gtctcgcaga gatgttattg cagcgaaagt
     4441 atgacaaagt atccattttg cggtgttatc gccccaggct gattgaaatg cccttctgtt
     4501 tcaggcataa agccccaaag tcataaagta cactggcagc gcgacagaca acgtcgttga
     4561 ggagtagcca tgcattacca gccaaaacaa gatttactca atgatcgcat tatcctggtg
     4621 acgggagcca gcgatgggat tggtcgtgaa gccgcgatga cgtatgcacg ctatggtgcg
     4681 acagtgattc tgttgggccg taatgaagaa aaattacgtc aggtagccag ccacataaac
     4741 gaagaaactg ggcgtcagcc acagtggttt attctcgatt tgctgacctg cacgtccgaa
     4801 aattgccaac aactggcaca gcgcattgtc gttaattatc cgcgtctgga tggtgttttg
     4861 cataatgccg gattgctcgg cgatatttgc ccaatgagcg aacaaaatcc gcaggtctgg
     4921 caggacgtca tgcaggtcaa cgttaatgcc acctttatgc tcacccaggc actgcttcct
     4981 ttattactca aatcggacgc cggttcactg gtctttactt catcaagcgt tggacgtcag
     5041 ggacgagcta actggggtgc atatgcagcg tcgaaatttg ccaccgaagg gatgatgcag
     5101 gtactggccg atgaatatca gcagcgcctg cgcgtcaact gcattaaccc aggcggtacg
     5161 cgcaccgcaa tgcgcgcaag cgccttcccg accgaagatc cacagaaact taaaacaccc
     5221 gctgatatca tgccgctcta cctctggctg atgggcgatg acagccgccg taaaaccggc
     5281 atgacctttg acgcccaacc gggccgtaaa ccaggaattt cccaatgagt gatgaacgct
     5341 accaacagcg tcagcagcga gtgaaagaaa aagtagatgc tcgtgtggcc caggccccag
     5401 gatgaacgcg gtattatcat cgtctttacc ggcaatggaa aaggcaaaac caccgcggca
     5461 tttggtacgg caacacgcgc agttggtcac ggaaaaaaag tgggcgtcgt gcagtttatt
     5521 aaaggcacct ggcctaatgg cgaacgcaat ctgctggaac cacatggcgt tgagtttcag
     5581 gtgatggcaa cgggctttac ctgggataca caaaaccgcg agtctgatac cgccgcctgc
     5641 cgcgaagtct ggcaacatgc aaagcggatg cttgctgatt cctcactgga tatggttttg
     5701 cttgatgaac tgacgtatat ggtggcgtat gactatttgc cactggaaga agtggtgcag
     5761 gcgttaaatg aacgtccaca tcaacagacg gtgattatca cgggtcgagg ctgtcatcgg
     5821 gatattcttg aactagcgga tacggtaagt gagctgcgcc ccatcaaaca tgcgtttgat
     5881 gccggtgtta aggcgcaaat agggattgat tattaatctg taaaaatgcc ggatatgacg
     5941 tccggcatac tttgattaac cgttattacg cccgccagaa cgacgaccgc cgctcacctg
     6001 actgtgacgt ttcaccgcac gacgaatctg attagccttc atgcgacgac ggtctttttc
     6061 tacagcgact ttagagctgg tttctggcgg aagccccacc agttcgcgca gatagttagt
     6121 ctgggcgagg tccagctccg tccagccacc gcgtggcaga ccttttggca gtgggatatc
     6181 accgtaacga acacggatca ggcggctcac ctgcacacca accgcttccc acagacgacg
     6241 aacttcacgg ttacggcctt cggtcagagt cacgttgtac cactggttga tcccttcgcc
     6301 gccgctgaac ttgatggttt taaaagctgc cggaccatct tccagttgca cgccacgact
     6361 caaatcacgc agtttcgcgt cgtcaacctg accaaataca cgcacggcgt attcacgttc
     6421 aacttcacgg cttggatgca ttaaacggtt tgccagttca ccatcggtgg tgaacagcag
     6481 cagaccacag gtgttaacgt ccagacgacc tacggcaatc cagcgtgcgc cacgcagctt
     6541 tggcagacgg tcaaacaccg tcggacgccc ttccggatcg ttacgggtac acaactcacc
     6601 ttccggtttg taataggcca gaacgcgaca aatttgttca gcggactcac gtaccgaaat
     6661 cagatgacca tcgatacgaa ttttcagccc aggggtaact tcaacgcgat cgccgagttt
     6721 agcaattttg ccatcaacac tcacacgacc ggcttcaata atagattcga tttcacggcg
     6781 ggagccgtgg ccagcgcggg ccagcacttt ctgtaatttt tcgctcatag agcttccttt
     6841 tggtgtcgcc ttcccaggcg tctgatatgc ttttgtgcaa cagtgagtca gaacttacat
     6901 ctgactcact gatagtaaag tctgtttgaa ctcttcaggc cttaagtaaa cgactcgacg
     6961 tttatcggcc tggctttgag gcgcaacata ctacactatc tttatggtta aagcttgttt
     7021 cgattaacat cagcttaatt accagccacc accgcctccg ccacccgcgc cgccgccagc
     7081 accaccaccg gaataacttc gccccaacaa actggtattg gccccgcaac ttaggtgcgt
     7141 ctgtaatgag aataaaacgc cgttacgggc aatctctgga gcgcgaatcg ccgaagaaag
     7201 cgaaggggca atgcgtaacg cccattccct ccccaaattt gccgatatag cccaacctag
     7261 caacgcgtaa tccagtttcc gtgtttcccc tttccgccga cgtccactgt gtgttgctgc
     7321 ctctttacgc gcaagatagt taacgatagc ttcaccgcgg gcataacgtt gctgcccagt
     7381 ttgggtaaac tttggcagaa aaatataccc catgccagtg agataaccgg tcaggcaaac
     7441 agcgctaaaa taacccgctg gcatatacca gtaaaagaat acatctccga cattgatata
     7501 gagagaatag aaggccacgc ctgaacaaat cagtggtaaa aacaaagtga tgattgcacg
     7561 attaacgcaa ggcttgtcat catcgcgggc aaacaaaagc tcaagggaac aaaataaaaa
     7621 aggaataatc cagcagatca taataaacat atcgcctacc agactcattc ctgcccaacc
     7681 tacgggactc aggttaccgt agagaatgat cgccaatatt gccagtccac cccattgcaa
     7741 aaacgtatca ggccggtaaa acaaagactt tttacgcggc agataaaatt tctgcatccg
     7801 taaaaatgcc ctgcgtaaga ctctgttgcg tctccccgta agaacgacct tatcgccttt
     7861 acgaaataac gcttccagta ataactgctc tgcgggcagt aatacctcat tatttctggt
     7921 cgcgccttca ttaacacaaa tcaggatttg ctggttctta tcatactgat cttccagatg
     7981 aatttttccc ttcacgatca gatttacgat atcggcacag aaacctttat cgtcgtaaac
     8041 cagcttcgca tcgagacgta acatgccggg cgtgtaatct ggcggaatga catcggtttc
     8101 aatcacatct accggcgtaa attgcggcct gcgcttccag agatataacc atccacaaac
     8161 caggaataga cacggaaacc aaattaacaa cgatgacgtg gagggtaaaa gaagatggct
     8221 gaaaatattc gtcgtttgtg gagccggggc attgctaagt aacgcgtgag gccagcggta
     8281 gagtaccgtg aaatcttctc gataaaacgg atcgcgggat tcaattcttc cgtcctcaag
     8341 gatgcggcca tttcgatatg tgtcgccctc ttctccagta aagagatcga tttcgctaaa
     8401 tggattaccc gcgatatcag ggaacttgag tgaaaatcgg gtcttataga tttcaaacgg
     8461 ccagtggtta ccagtcacgt tccagattaa cagatctgaa tctccctcac gcaggaaagc
     8521 atttttaacc tgataatgaa tttgataatg atagtcgcct tgaggcaaga aacgttgttt
     8581 atcgcccacg acaatactca ttaacccgat atgccagtca agatgccagg gttcaggaat
     8641 accatcacga gtgacgccaa caatatgata gttcagcagt gcagcgtccc catcaggctg
     8701 catccagagt cgtggtaaat cacgataaaa tccgtgctta atctgctgat ttcgcgcctg
     8761 aaaatgaata ttttctttga tgtcgagcac cccatccggt tgcagagtgg cttcaacatc
     8821 aaagagcgag atcccttctt cataagaagg gatctccggg ttttctgcat aacttagaga
     8881 tgatacaaac agccctgcta tcaacagcaa aatgcagcga aacttccctg ccatagtctt
     8941 ccatccgtgg aacgcaattt gttataagaa aggcttcaca tcacccacgc cttcacgcac
     9001 cacgaccggc gtatcatcgg taagatcaat gaccgttgtc ggtttctgtc cgagatagcc
     9061 gccgtggata atcaaatcca cctgtttttc cagacggtct ttaatttctt ctggatcgga
     9121 ttcggtaaat tcgctgcctg gcagcattag cgaagtggaa agcatcggtt cgcccagtgc
     9181 ttcaagcaac gcctgcgcaa tcgggttaga aggcacacgc ataccgatgg ttttgcgttt
     9241 ttcctgcaac agacggcgtg gcacctcctt cgtccccttc aggatgaagg tatagttgcc
     9301 cggcgtgttg tttttcatta aacgaaacgc aacgttatcc acgaatgaat aggtcgaaag
     9361 ttcagaaaga tcgcgacaca tcagggtaaa gttgtgaccg tccggcagct ggcgaatacg
     9421 acaaatacgc tccatcgcgt ttttatcttc aattttacag ccgagcgcat agccggaatc
     9481 agttggataa acaatcaccc cgcctttacg cacgatctcc accgcctggt tgatcagacg
     9541 ttgctgcggg ttatcaggat gaatataaaa aaactggctc ataattccct ctctgtggtg
     9601 ttctgcggct gttcccatag ctgccagacg ccttcaacgc ctgcgggcag ccagagttta
     9661 cgacccagtt cgatccacgg gcatggctga tgaaaatcag atccttgtga tgcccataaa
     9721 tgatgctgac gcgcaagtgt cgtcaactgg gtgcgttcat tgggcgattg ctggcactgc
     9781 gcgacttcca tcgcgtcgcc gtggtgttcg gcaaaatgcg caaccaatct tttcagccat
     9841 ttagcactaa gattgtaccg cccaggatga gctagcaccg ccttaccgcc agaatgatga
     9901 atgacatcaa tagcttgttc tattgtacac cactgtggcg aaacgtatcc ggttttcccg
     9961 cgcgccagat actttttaaa gacatctgcc attgaactgg ctttgccgca ctcaacaagg
    10021 aaacgcgcaa aatgaccgcg cgtcactgcg ccgccctgcg ccagtcgttg tgcgccttcc
    10081 agcgccccag gtatttgcgc tttttcaagt ctttcggcaa tttgctgcgc ccgctgattg
    10141 cgccgttctg tctgctgcgc gaggaactca cacattagcg gatgagtaat atcaatattc
    10201 agcccgacaa tatgaatttc atgattttcc cagaccgtgg aaatttccac gccgggaata
    10261 agattcagcg ccagtcccga acgtgaaatt tcctctcttg ctggcgcgat tgcagctgtg
    10321 gtgtcatggt cggtgatcgc cagggtgccg acgcgcatct cgactgcacg gtgcaccaat
    10381 gcttctggcg tcaggcagcc atcggaagct gtggtatggc tgtgcaggtc gtaaatcact
    10441 gcgtaattcg tgtcgctcaa ggcgcactcc cgttctggat aatgtttttt gcgccgacat
    10501 cataacggtt ctggcaaata ttctgaaatc agctgttgac aattaatcat cgaactagtt
    10561 aactagtacg caagttcacg taaaaagggt atcgacaatg aaagcaattt tcgtactgaa
    10621 agcttggtgg cgcacttcct gaaacgggca gtgtattcac catgcgtaaa gcaatcagat
    10681 acccagcccg cctaatgagc gggctttttt ttgaacaaaa ttagagaata acaatgcaaa
    10741 cacaaaaacc gactctcgaa ctgctaacct gcgaaggcgc ttatcgcgac aacccgactg
    10801 cgctttttca ccagttgtgt ggggatcgtc cggcaacgct gctgctggaa tccgcagata
    10861 tcgacagcaa agatgattta aaaagcctgc tactggtaga cagtgcgctg cgcattacag
    10921 cattaggtga cactgtcaca attcaggcac tttccggcaa cggcgaagcc ctgctgacac
    10981 tactggataa cgccctgcct gcgggtgtgg aaaatgaaca atcaccaaac tgccgtgtgc
    11041 tgcgcttccc ccctgtcagt ccactgctgg atgaagacgc tcgcttatgc tccctttcgg
    11101 tttttgacgc tttccgttta ttgcagaatc tgttgaatgt accgaaggaa gaacgagaag
    11161 caatgttctt cggcggcctg ttctcttatg accttgtggc gggatttgaa gatttaccgc
    11221 aactgtcagc ggaaaataac tgccctgatt tctgttttta tctcgctgaa acgctgatgg
    11281 tgattgacca tcagaaaaaa aacacccgca ttcaggccag cctgtttgct ccgaatgaag
    11341 aagaaaaaca acgtctcact gctcgcctga acgatcttcg ccagcagctg accgaagccg
    11401 cgccgccgct gccggtggtt tccgtgccgc atatgcgttg tgaatgtaac cagagcgatg
    11461 aagagttcgg tggcgtggtg cgtttgttgc aaaaagcgat tcgcaccgga gaaattttcc
    11521 aggtggtgcc gtctcgccgt ttctctctgc cctgcccgtc accgctggcg gcctattacg
    11581 tgctgaaaaa gagtaatccc agcccgtaca tgttttttat gcaggataat gatttcaccc
    11641 tgtttggcgc gtcgccggaa agttcgctca agtatgacgc caccagccgc cagattgaga
    11701 tctacccgat tgccggaaca cgcccgcgcg gtcgtcgcgc cgatggttca ctggacagag
    11761 acctcgacag ccgcatcgaa ctggaaatgc gtaccgatca taaagagctt tctgaacatc
    11821 tgatgctggt ggatctcgcc cgtaatgatc tggcacgcat ttgcaccccc ggcagccgct
    11881 acgtcgccga tcttaccaaa gttgaccgtt actcttacgt gatgcacctg gtctcccgcg
    11941 tggtcggtga gctgcgccac gatctcgacg ccctgcacgc ttaccgcgcc tgtatgaata
    12001 tggggacgtt aagcggtgcg ccgaaagtac gcgccatgca gttaattgcc gaggcggaag
    12061 gtcgtcgccg cggcagctac ggcggcgcgg taggttattt caccgcgcat ggcgatctcg
    12121 acacctgcat tgtgatccgc tcagcgctgg tggaaaacgg tatcgccacc gtgcaagccg
    12181 gtgctggcat agtccttgat tctgttccgc agtcggaagc cgacgaaacc cgtaataaag
    12241 cccgcgctgt actgcgcgct attgccaccg cgcatcatgc acaggaaact ttctgatggc
    12301 tgacattctg ctgctcgata atatcgactc ttttacgtac aacctggcag atcagttgcg
    12361 cagcaatggg cataatgtgg tgatttaccg caaccatatt ccggcgcaga ccttaattga
    12421 acgcctggcg acgatgagca atccggtgct gatgctttct cctggccccg gtgtgccgag
    12481 cgaagccggt tgtatgccgg aactcctcac ccgcttgcgt ggcaagctgc ccattattgg
    12541 catttgcctc ggacatcagg cgattgtcga agcttacggg ggctatgtcg gtcaggcggg
    12601 cgaaattctc cacggtaaag cctccagcat tgaacacgac ggtcaggcga tgtttgccgg
    12661 attaacaaac ccgctaccag tggcgcgtta tcactcgctg gttggcagta acattccggc
    12721 cggtttaacc atcaacgccc attttaatgg catggtgatg gcagtacgtc acgatgcgga
    12781 tcgcgtttgt ggattccagt tccatccgga atccattctt actacccagg gcgctcgcct
    12841 gctggaacaa acgctggcct gggcgcagcg gaaactagag ccaaccaaca cgctgcaacc
    12901 gattctggaa aaactgtatc aggcgcagac gcttagccag caagaaagcc accagctgtt
    12961 ttcagcagtg gtacgtggcg aactgaaacc ggaacaactg gcggcggcgc tggtgagcat
    13021 gaaaattcgc ggcgagcacc cgaacgagat cgccggagca gcaaccgcgt tactggaaaa
    13081 cgccgcgccg ttcccgcgcc cggattatct gtttgccgat atcgtcggca ccggtggtga
    13141 cggcagtaac agcatcaata tttccaccgc cagtgcgttt gtcgccgcgg cctgtgggct
    13201 gaaagtggcg aaacacggca accgtagcgt ctccagtaaa tctggttcgt ccgatctgct
    13261 ggcggcgttc ggtattaatc ttgatatgaa tgccgataaa tcgcgccaag cgctggatga
    13321 gttaggcgta tgtttcctct ttgcgccgaa atatcacacc ggatttcgcc atgcgatgcc
    13381 ggttcgccag caactgaaaa cccgcactct gttcaacgtg ctgggaccat tgattaaccc
    13441 ggcgcatccg ccgctggcgt taattggtgt ttatagtccg gaactggtgc tgccgattgc
    13501 cgaaaccttg cgcgtgctgg ggtatcaacg cgcggcggta gtgcacagcg gcggtatgga
    13561 tgaagtttca ttacacgcgc cgacaatcgt tgccgaactg catgacggtg aaattaagag
    13621 ctatcagcta actgcagaag attttggcct gacaccctac caccaggagc aactggcagg
    13681 cggaacaccg gaagaaaacc gtgacatttt aacacgcttg ttacaaggta aaggcgacgc
    13741 cgctcacgaa gcagccgtcg cggcgaatgt cgccatgtta atgcgcctgc atggccatga
    13801 agatctgcaa gccaatgcgc aaaccgttct tgaggtactg cgcagtggtt ccgcttacga
    13861 cagagttacc gcactggcgg cacgagggta aatgatgcaa accgttttag cgaaaatcgt
    13921 cgcagacaag gcgatttggg tagaaacccg caaacagcag caaccgctgg ccagttttca
    13981 gaatgaggtt cagccgagca cgcgacattt ttatgatgcg ctacagggtg cacgcacggc
    14041 gtttattctg gagtgcaaga aagcgtcgcc gtcaaaaggc gtgatccgtg atgatttcga
    14101 tccggcacgc attgccgcca tttataaaca ttacgcttcg gcaatttcgg tgctgactga
    14161 tgagaaatat tttcagggga gctttgattt cctccccatc gtcagccaaa tcgccccgca
    14221 gccgatttta tgtaaagact tcattatcga cccttaccag atctatctgg cgcgctatta
    14281 ccaggccgat gcctgcttat taatgctttc agtactggat gacgaccaat atcgccagct
    14341 tgcagccgtc gctcacagtc tggagatggg ggggctgacc gaagtcagta atgaagagga
    14401 actggagcgc gccattgcat taggggcaaa ggtcgttggc atcaacaacc gcgatctgcg
    14461 tgatttgtcg attgatctca accgtacccg cgagcttgcg ccgaaactgg ggcacaacgt
    14521 aacggtaatc agcgaatccg gcatcaatac ttacgctcag gtgcgcgagt taagccactt
    14581 cgctaacggt tttctgattg gttcggcgtt gatggcccat gacgatttgc acgccgccgt
    14641 gcgccgggtg ttgctgggtg agaataaagt atgtggcctg acgcgtgggc aagatgctaa
    14701 agcagcttat gacgcgggcg cgatttacgg tgggttgatt tttgtcgcga catcaccgcg
    14761 ttgcgtcaac gttgaacagg cgcaggaagt gatggctgcg gcaccgttgc agtatgttgg
    14821 cgtgttccgc aatcacgata ttgccgatgt ggtggacaaa gctaaggtgt tatcgctggc
    14881 ggcagtgcaa ctgcatggta atgaagatca gctgtatatc gatacgctgc gtgaagctct
    14941 gccagcacat gttgccatct ggaaagcatt aagcgtcggt gaaaccctgc ccgcccgcga
    15001 gtttcagcac gttgataaat atgttttaga caacggccag ggtggaagcg ggcaacgttt
    15061 tgactggtca ctattaaatg gtcaatcgct tggcaacgtt ctgctggcgg ggggcttagg
    15121 cgcagataac tgcgtggaag cggcacaaac cggctgcgcc ggacttgatt ttaattctgc
    15181 tgtagagtcg caaccgggca tcaaagacgc acgtcttttg gcctcggttt tccagacgct
    15241 gcgcgcatat taaggaaagg aacaatgaca acattactta acccctattt tggtgagttt
    15301 ggcggcatgt acgtgccaca aatcctgatg cctgctctgc gccagctgga agaagctttt
    15361 gtcagcgcgc aaaaagatcc tgaatttcag gctcagttca acgacctgct gaaaaactat
    15421 gccgggcgtc caaccgcgct gaccaaatgc cagaacatta cggctgggac gaacaccacg
    15481 ctgtatctga agcgcgaaga tttgctgcac ggcggcgcgc ataaaactaa ccaggtgctc
    15541 ggtcaggctt tactggcgaa acggatgggt aaaaccgaaa tcatcgccga aaccggtgcc
    15601 ggtcagcatg gcgtggcgtc ggcccttgcc agcgccctgc tcggcctgaa atgccgtatt
    15661 tatatgggtg ccaaagacgt tgaacgccag tcgcctaacg tttttcgtat gcgcttaatg
    15721 ggtgcggaag tgatcccggt acatagcggt tccgcgacgc tgaaagatgc ctgtaacgag
    15781 gcgctgcgcg actggtccgg cagttatgaa accgcgcact atatgctggg caccgcagct
    15841 ggcccacatc cttatccgac cattgtgtgt gagtttcagc ggatgattgg cgaagaaacg
    15901 aaagcgcaga ttctggaaag agaaggtcgc ctgccggatg ccgttatcgc ctgtgttggc
    15961 ggcggttcga atgccatcgg catgtttgca gatttcatca acgaaaccaa cgtcggcctg
    16021 attggtgtgg agccgggtgg tcacggtatc gaaactggcg agcacggcgc accgctaaaa
    16081 catggtcgcg tgggcattta tttcggtatg aaagcgccga tgatgcaaac cgaagacggg
    16141 cagattgaag aatcttactc catctccgcc ggactggatt tcccgtctgt cggcccacaa
    16201 cacgcgtatc ttaacagcac tggacgcgct gattacgtgt ctattaccga tgatgaagcc
    16261 cttgaagcct tcaaaacgct gtgcctgcac gaagggatta tcccggcgct ggagtcttcc
    16321 cacgccctgg cccatgcgct gaaaatgatg cgcgaaaccc cggaaaaaga gcagctactg
    16381 gtggttaacc tttccggtcg cggcgataaa gacatcttca ccgttcacga tattttgaaa
    16441 gcacgagggg aaatctgatg gaacgctacg aatctctgtt tgcccagttg aaggagcgca
    16501 aagaaggcgc attcgttcct ttcgtcacgc tcggggatcc gggcattgag cagtcattga
    16561 aaattatcga tacgctaatt gaagccggtg ctgacgcgct ggagttaggt atccccttct
    16621 ccgacccact ggcggatggc ccgaccattc aaaacgccac tctgcgcgcc tttgcggcag
    16681 gtgtgactcc ggcacaatgt tttgaaatgc tggcactgat tcgccagaaa cacccgacca
    16741 ttcccattgg cctgttgatg tatgccaatc tggtgtttaa caaaggcatt gatgagtttt
    16801 atgcccagtg cgagaaagtc ggcgtcgatt cggtgctggt tgccgatgtg ccagttgaag
    16861 agtccgcgcc cttccgccag gccgcgttgc gccataatgt cgcacctatc ttcatctgcc
    16921 cgccaaatgc cgatgacgac ctgctgcgcc agatagcctc ttacggtcgt ggttacacct
    16981 atttgctgtc acgagcgggc gtgaccggcg cagaaaaccg cgccgcgtta cccctcaatc
    17041 atctggttgc gaagctgaaa gagtacaacg ctgcacctcc attgcagggg tttggtattt
    17101 ccgccccgga tcaggtaaaa gcagcgattg atgcaggagc tgcgggcgcg atttctggtt
    17161 cggccattgt taaaatcatc gagcaacata ttaatgagcc agagaaaatg ctggcggcac
    17221 tgaaagtttt tgtacaaccg atgaaagcgg cgacgagcag ttaatcccac agtcgccagt
    17281 tccgttggcg gcattttaac tttctttaat gaagccggaa aaatcctaaa ttcatttaat
    17341 atttatcttt ttaccgcttc gcttacccct gtcgaacgtc aacttacgtc atttttccgt
    17401 ccaacagtaa tataatcaaa caaattaatc ccgcaacata acaccagtaa aatcaataat
    17461 tttctctaa
//
LOCUS       DAJVUN010000078        16907 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.078, whole genome shotgun sequence.
ACCESSION   DAJVUN010000078 DAJVUN010000000
VERSION     DAJVUN010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16907
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.078"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..384)
                     /locus_tag="OQQ76_002212"
     CDS             complement(<1..384)
                     /locus_tag="OQQ76_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1968699.1"
                     /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDI
                     QTAAFCLVCLLWPTAAVTVNRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVG
                     CFVPTLILVMMLIDLGAFVGTQGENK"
     gene            485..1084
                     /locus_tag="OQQ76_002213"
     CDS             485..1084
                     /locus_tag="OQQ76_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiQ family protein"
                     /protein_id="HCS1968700.1"
                     /translation="MKPGCTLFFLLCSALTVTTTAHAQTPDTATTAPYLLAGAPTFDL
                     SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK
                     SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY
                     TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK"
     gene            1192..1959
                     /gene="tpiA"
                     /locus_tag="OQQ76_002214"
     CDS             1192..1959
                     /gene="tpiA"
                     /locus_tag="OQQ76_002214"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HCS1968701.1"
                     /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE
                     MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH
                     KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE
                     GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA
                     AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA"
     gene            complement(2014..2769)
                     /gene="cdh"
                     /locus_tag="OQQ76_002215"
     CDS             complement(2014..2769)
                     /gene="cdh"
                     /locus_tag="OQQ76_002215"
                     /EC_number="3.6.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
                     /protein_id="HCS1968702.1"
                     /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP
                     NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW
                     LAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLAN
                     ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQS
                     DNSFVLLATQRNLLTLNRASAEEIQDHQCEILR"
     gene            complement(2876..3865)
                     /gene="sbp"
                     /locus_tag="OQQ76_002216"
     CDS             complement(2876..3865)
                     /gene="sbp"
                     /locus_tag="OQQ76_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter
                     substrate-binding protein Sbp"
                     /protein_id="HCS1968703.1"
                     /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS
                     AHWKQQTGDNVVMRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI
                     KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW
                     GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA
                     ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAK
                     NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR"
     gene            complement(4185..5147)
                     /gene="pfkA"
                     /locus_tag="OQQ76_002217"
     CDS             complement(4185..5147)
                     /gene="pfkA"
                     /locus_tag="OQQ76_002217"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014072359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HCS1968704.1"
                     /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLG
                     LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG
                     GDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS
                     HQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAI
                     VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL
                     LAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY"
     gene            complement(5328..6230)
                     /gene="fieF"
                     /locus_tag="OQQ76_002218"
     CDS             complement(5328..6230)
                     /gene="fieF"
                     /locus_tag="OQQ76_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312867.1"
                     /note="FieF, a metal efflux transporter, is a member of
                     the CDF (cation diffusion facilitator) family of
                     transporters; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter FieF"
                     /protein_id="HCS1968705.1"
                     /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV
                     DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI
                     QHLISPTPMIDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM
                     NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI
                     IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP
                     GSDVIIHQDPCSVVPREGKRSMLS"
     gene            complement(6380..6892)
                     /gene="cpxP"
                     /locus_tag="OQQ76_002219"
     CDS             complement(6380..6892)
                     /gene="cpxP"
                     /locus_tag="OQQ76_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-envelope stress modulator CpxP"
                     /protein_id="HCS1968706.1"
                     /translation="MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRRTQRS
                     TQSHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQ
                     AEKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLK
                     LLSSSNSRSQ"
     gene            7042..7740
                     /gene="cpxR"
                     /locus_tag="OQQ76_002220"
     CDS             7042..7740
                     /gene="cpxR"
                     /locus_tag="OQQ76_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response regulator transcription
                     factor CpxR"
                     /protein_id="HCS1968707.1"
                     /translation="MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS
                     IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF
                     NDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGT
                     EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF
                     KTLRGRGYLMVSAS"
     gene            7737..9110
                     /gene="cpxA"
                     /locus_tag="OQQ76_002221"
     CDS             7737..9110
                     /gene="cpxA"
                     /locus_tag="OQQ76_002221"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HCS1968708.1"
                     /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR
                     QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEM
                     QIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL
                     FDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF
                     LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELER
                     IETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTV
                     NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVS
                     PEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW
                     LPLYKRS"
     gene            complement(9216..9890)
                     /gene="yiiM"
                     /locus_tag="OQQ76_002222"
     CDS             complement(9216..9890)
                     /gene="yiiM"
                     /locus_tag="OQQ76_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418346.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein"
                     /protein_id="HCS1968709.1"
                     /translation="MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQ
                     AEKKVHGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGD
                     IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPL
                     ELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFP
                     RRLWGK"
     gene            complement(10039..10950)
                     /gene="kdgT"
                     /locus_tag="OQQ76_002223"
     CDS             complement(10039..10950)
                     /gene="kdgT"
                     /locus_tag="OQQ76_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate transporter"
                     /protein_id="HCS1968710.1"
                     /translation="MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMI
                     TGTVSILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVE
                     VGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGT
                     AGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTV
                     IAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATAVIVTSI
                     LVPILTSIWSRKVKARAAKIEILGTVK"
     gene            complement(11210..11830)
                     /gene="sodA"
                     /locus_tag="OQQ76_002224"
     CDS             complement(11210..11830)
                     /gene="sodA"
                     /locus_tag="OQQ76_002224"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010345169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HCS1968711.1"
                     /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE
                     SLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA
                     IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS
                     GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK"
     gene            12114..13148
                     /gene="rhaT"
                     /locus_tag="OQQ76_002225"
     CDS             12114..13148
                     /gene="rhaT"
                     /locus_tag="OQQ76_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HCS1968712.1"
                     /translation="MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIV
                     SWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
                     IGIAIGITLIVGTLMTPIINGNFDVLLNTEGGRMTLLGVLVALIGVGIVTRAGQLKER
                     KMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV
                     IIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFY
                     AWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVA
                     ANIVGIGMAN"
     gene            complement(13145..14011)
                     /gene="rhaR"
                     /locus_tag="OQQ76_002226"
     CDS             complement(13145..14011)
                     /gene="rhaR"
                     /locus_tag="OQQ76_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418342.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaR"
                     /protein_id="HCS1968713.1"
                     /translation="MAEVATVAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDF
                     CELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKL
                     NLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQ
                     LVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQ
                     FRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMT
                     PSQWRHLNSQKD"
     gene            complement(14067..14903)
                     /gene="rhaS"
                     /locus_tag="OQQ76_002227"
     CDS             complement(14067..14903)
                     /gene="rhaS"
                     /locus_tag="OQQ76_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaS"
                     /protein_id="HCS1968714.1"
                     /translation="MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHG
                     TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLL
                     PQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
                     SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQR
                     YLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFHREFNWSPRDIRQGRDGF
                     LQ"
     gene            15191..16606
                     /gene="rhaB"
                     /locus_tag="OQQ76_002228"
     CDS             15191..16606
                     /gene="rhaB"
                     /locus_tag="OQQ76_002228"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF002963.0"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HCS1968715.1"
                     /translation="MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHHFNNGLHS
                     QNGYVTWNVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAY
                     RDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
                     PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIG
                     HWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTA
                     LAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPAHYLSHCERIKATNGKDR
                     VIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQ
                     ATAQEMQKHSLVLWPFHGVFGSGSTLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISR
                     EELIALGKRFGVTPLASALAL"
     gene            16616..>16907
                     /gene="rhaM"
                     /locus_tag="OQQ76_002229"
     CDS             16616..>16907
                     /gene="rhaM"
                     /locus_tag="OQQ76_002229"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HCS1968716.1"
                     /translation="MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIY
                     LDKARNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSEL"
BASE COUNT         4233 a         4421 c         4226 g         4027 t
ORIGIN      
        1 tttattttcg ccttgtgtgc caacaaacgc accaagatcg ataagcatca tcaccagaat
       61 caacgtcggg acaaaacacc ccaccgccca ttgccagaca cccggtaaaa tcgcccagtt
      121 acccgccagc agcatccacg ccacaatcat cagaaatgcc catgcgccgg aacgcccgcg
      181 atcatgcaag cgattaacag ttactgccgc tgttggccaa agcaagcaca caaggcaaaa
      241 cgccgcggtc tgaatatcga gtaaattttt acccgccagt gagaaaagca ccagcatgcc
      301 tgcgaaccac aggcctatcc aaatccagaa atcacggcgt ccaatacgcc ctttaaatga
      361 gaataaccat tgctgtatgg tcatgtaagt tccttgatgg ttgtcttttc caggattcta
      421 cccttttgac aagggcgaca gatatcgttt taatcggagc cagtcataac aaaaggtact
      481 gtcaatgaag ccagggtgta cgctgttttt tctcttatgt tctgcattaa ccgttacaac
      541 aacggcgcat gcacaaacac cagatacggc aacgaccgcg ccttatctgc tggctggagc
      601 ccctactttc gatctctcca tcagccagtt tcgagaagac tttaacagcc agaatcctag
      661 cctgccactg aacgaatttc gtgccatcga cagcagtccc gacaaagcca atctcactcg
      721 tgctgcaagt aaaattaacg agaacttgta tgcttctaca gcgctggagc gcggtacctt
      781 aaaaatcaaa agcattcaaa tgacctggct acccatccag gggccagagc aaaaagcagc
      841 gaaagcgaaa gctcaggaat acatggcagc agtgatccgc acactcaccc cattaatgac
      901 caaaacacaa agccagaaaa aactgcagtc gctgctaacg gcggggaaaa acaaacgtta
      961 ttacaccgag acagaaggtg cactgcgtta tgttgtcgcg gacaacggcg aaaaggggct
     1021 gaccttcgct gttgaaccga ttaagctggc gctatctgaa tcgcttgaag gtttgaataa
     1081 atgacaaaaa gcaaagcctt tgtgccgatg aatctctata ctgtttcaca gacctgctgc
     1141 cctgcggggc ggccatcttc ctttattcgc ttataagcgt ggagaattaa aatgcgacat
     1201 cctttagtga tgggtaactg gaaactgaac ggcagccgcc acatggttca cgagctggtt
     1261 tctaacctgc gtaaagagct ggcaggtgtt gctggctgtg cggttgcaat cgcaccaccg
     1321 gaaatgtaca tcgatatggc gaagcgcgaa gctgaaggca gccacatcat gctgggtgcg
     1381 caaaacgtgg acctgaacct gtccggcgca ttcaccggtg aaacctctgc tgctatgctg
     1441 aaagacatcg gcgcacagta catcatcatc ggccactctg aacgtcgtac ttaccacaaa
     1501 gagtctgacg aactgatcgc gaaaaaattc gcggtgctga aagagcaggg tctgactccg
     1561 gttctgtgca tcggtgaaac cgaagctgaa aacgaagcgg gcaaaactga agaagtttgc
     1621 gcacgtcaga tcgacgcggt actgaaaact cagggtgctg cggcattcga aggtgcggtt
     1681 atcgcttacg aacctgtatg ggcaatcggt actggcaaat ctgcaactcc ggctcaggca
     1741 caggctgttc acaaattcat ccgtgaccac atcgctaaag ttgacgctaa catcgctgaa
     1801 caagtgatca ttcagtacgg cggctctgta aacgcgtcta acgctgcaga actgtttgct
     1861 cagccagaca tcgacggcgc gctggttggc ggtgcgtctc tgaaagctga cgctttcgca
     1921 gtaatcgtta aagctgcaga agcggctaaa caggcttaag tctgacaggt gccggatttc
     1981 atatccggca cttactttcc ttaactcttc gccttaacgc aaaatctcac actgatgatc
     2041 ctgaatttcc tcggctgaag cacggttaag cgtcagtaga tttcgttgtg tcgccagcaa
     2101 tacaaatgag ttatcactct gccgtaccat cgccagcccg tagcttccca tatgttcccg
     2161 cgcctcaggt acttcttctg ccagcatcat aaatgggctg cgttgtacca gttcgctttc
     2221 cgttacccga cgcgccaggt attcatgccc gcgcaaacca cctggcagtg gcaaccagcg
     2281 gctgctgatg ttcgccagat tgttatccag ttgttcgcgc acatcaggac gaatacaaga
     2341 gatatgaata tgaaaatggt tttgcgtacg cccggtgcgg gagttgatcg ccaaagaaac
     2401 cgcgcgatcg ggaaccggct ggccgtactt tttgctcata aaatcacgcg cctgccaggc
     2461 caaccaaaag aagttcggcg ttgaaggatc ggtcaacaaa ggactttcag taccgttaat
     2521 acgatacgtt ggcatcaaca gatattgcag tgggccatta agatctttta aaaccacgta
     2581 tccggcattg ggtttgactt ccgcacatgg cgaaggattt tgattttgct gctgattggg
     2641 caaacattcc tcaaggacaa tcttacgtaa tgtatccgac tcttcaccgg ttaatttcca
     2701 gtaaccaata ccggcagcca caacggcgat aactatcatc accaaaaaaa gaagacccgc
     2761 ttttttcatc tttttttccc tgtacctcaa agagatgcaa gggtaacgca aaatcgtgac
     2821 aaataaaaaa cccggtcgcg agaaaccacc gggtttgata attatcctgg ggaaatcagc
     2881 gtttgctgat ctgatcgaac gtaccgccgt tagcaaaatg ctctttttgc gctttcgtcc
     2941 agccgccgaa ctcttcatca atggtgaata acttcagctt tggaaacgca ttttcgtact
     3001 ttttcgctac ttcagcgtcg cgcggacggt agtagttttt cgcggcaatt tcctgacctt
     3061 ctggcgagta gagatatttc aggtaggctt ccgccacctc tttggtgcct tttttctcga
     3121 ccactttatc gaccaccgac acggttggct ctgcgaggat agactcactc ggcgtgacga
     3181 tttcgaattt atctttcccc agttcattcg ctgccagcag agcttcgttt tcccaggcga
     3241 tcagtacatc gccaatcccg cgctcgacaa aggtgttagt ggagccgcgc gcgccagaat
     3301 ccagaacttc gacgttttta tacagtgccc gaacaaaatc ctgtgctttt gcctgatcgt
     3361 tgttgttgtg atgcagcgcg tagccccagg cagccaggta gttccagcgt gcgccaccag
     3421 agcttttcgg attaggcgtg atcaccgaaa cacccggttt aatcagatcg ttccagtcat
     3481 ggatctgctt cggattgccc ttacgcacca ggaaaacaat ggtggaagtg tacggtgcgg
     3541 agttatccgg cagacgtttg atccactctt tatcaatccg cccgcgttcc gcaattgcgt
     3601 ccacgtcata ggccagagcc agcgtgacaa catcagcttc aataccgttg attaccgacg
     3661 tcgcttgttt acctgaacca ccgtgtgact gacgcatcac cacgttatca ccagtttgct
     3721 gtttccagtg ggcgctgaat gccttgttgt actgttcgta caattcgcgc gttggatcat
     3781 atgaaacgtt aagaagctga atatcctttg ccataacgct ggttgccgcc agcaaaaatg
     3841 ttaaccctac gccccacttg ttcatcgccc gactctctta tgttgtgttg tgatgagcaa
     3901 agcgtgccag aaggttaacc aaacattaaa gaataaaaaa agattggcta taacttgcgg
     3961 gtatatgttg agggattaaa aaggcggaag aaatccgcct catattgctg acaaagtgcg
     4021 ctttgtccat gccggatgcg gcgcgaacgc cttatccggc ctacaaaagt ttgcaaattc
     4081 aataaattgc agaattcatg taggtctgat aagcgaagcg catcaggcat ttttgcttct
     4141 gtcatcggtt tcaggctaaa ggaatctgcc tttttccgaa atcattaata cagttttttc
     4201 gcgcagtcca gccagtcacc tttgaacgga cgcttcatgt tttcgatagc gtcgatgatg
     4261 tcgtggtgaa ccagctgttc gttctggata cctacacaac gaccgccgta acctgccagc
     4321 agcagatcga tagcgtaagc gcccatacgg gaagccagaa tacggtcgta aggcaccgga
     4381 gaaccaccgc gctggatgtg gcccagcaca gttgcgcggg tttcacgacc ggtttctttc
     4441 tcgatgaaat gcgccagttc gtcaacatca cacatatgtt cggtaatcgc cacgatcgcg
     4501 tgttttttac ctttcgcgat acccgctttg atttcgttta ccaggtcttc acggctgaat
     4561 tcaacttccg gaaccacaac gaattcacag ccaccggcaa tggccgcagc caacgtcaga
     4621 tcgccacaat aacggcccat cacttccacc acggaaatac gctggtgaga agaagaggtg
     4681 tcacgcagac ggtcgatcgc ttctacaacg gtgctcagcg cagtgaagaa accgatagtg
     4741 tagtcagtgc ctttgatgtc gttgtcgata gtgcccggca gaccgatgca cgggaagccc
     4801 atttcggtca gacgcattgc acccatgtag gaaccgtcac cgccgataac caccagcgcg
     4861 tcgataccac gttttttcag gttttcgata gccacggcgc ggatgttctc gtcgcggaat
     4921 tccgggaaac gcgcagaacc gaggaacgta ccgccacggt tgatcatgtc agacacgctg
     4981 taacggtcta gctgtaccat acggtcttca tacagaccca gatagccgtc ataaataccc
     5041 attacttcca gaccttctgt cagcgcagaa cgaacaaccc cgcgaattgc ggcgttcatg
     5101 cctggcgcat caccgccgct tgtcaacaca ccgattttct taatcattac tacctctgaa
     5161 ctttggaatg caaaatgaaa tctgttgccg gaagtcttct tgcacatcga agtgatccaa
     5221 cgaatgtgca aatagtataa caatcacttc ctgctgaatt gattcaggtc aggccaaatg
     5281 gcggtatttt atacacaaaa tgcgggtctg gctctctttt atactgatta tgaaagcata
     5341 gaccgtttac cctccctggg tacgacggaa caggggtcct gatggataat tacatccgat
     5401 cccggaaaac gccgtaaaat agcctgctct acctgatccg ccaccatatg tgcctgaacc
     5461 aaaggcagag agtcttccat ttccaaatga atctgaataa agcgggtcgg ccctgactgc
     5521 cgcgtgcgaa gatcgtgagc gccgctaaca cccggccagg aagtcacgat atcaataatt
     5581 tcttgccgtt cctcatcagg caatgcgcga tccagtaatg actgtaccgc ctcatatccc
     5641 atgcgtaacg cgctatataa aatatagatg ccgattccca atgcaaacag agcatcggcg
     5701 cgatgccagc cgtaccagga caaccccagc gccagcagaa ttgcgccgtt catcataaca
     5761 tcagactggt aatgtagcat atcagcccgc accgcctggc tttgcgtccg gcgcaccacc
     5821 caacgctgaa acgagacaag gataatcgta caaattagcg ccacaattgt cacgataacc
     5881 ccgacgcctg gatctatcat cggtgttgga gatatcagat gttgaatacc cgtcaaaaac
     5941 aggaatagtg ccgaaccaga gataaacata ctttgcgcca gcgccgcgag ggactctgct
     6001 ttaccgtgac caaacgagtg attatcgtcg gcaggttgca gggaatatcg caccaccagt
     6061 aaattcgtca acgacgcgcc gatatccacc agcgaatcca ccagcgcggc gagaatactc
     6121 accgacccgg tataccacca tgcaaaaatt ttaatcagca atagcaacga agccatcgcc
     6181 gtcgcagcaa tcgccgcccg actgaccagc cgtccataag attgattcat aaatactccc
     6241 gctatcaact gacgctagta taacggaagc aaatcatctg caatgcatta agcagcaggc
     6301 aaattgagga taaaaaaaaa accccacatc atgtggggga agacagggat ggtgtctatg
     6361 gcaaggaaaa cagggtttac tactgggaac gtgagttgct actactcaat agcttcaacg
     6421 atgaactttt ttgccattgc gtcacgtcac gcaactgctc cattcgttgt tgatgtttct
     6481 cgtttaaaac cgcttgctgc tccggcgtta acaggcgata catttggttg cggacttttg
     6541 ccatctcaac ctgacgagca atttgctcat tcgccatttt ttctgcctgt gcgcgcacag
     6601 cgttttcatc aaaattttct gcggtgacaa ggcgatgcat tgtctccagt tcgctaacat
     6661 taacaggagg ctgttcgtgc cgggcctgtt gcataagatc tcgcatctgc tgacgctgat
     6721 gttcggttaa acttatgccg tcgaacatat ggctctgcgt actgcgctgc gtcctgcgct
     6781 gcgtaagttc ttcacccgga tgccagttat cgcctgaacc gacttcagca gcgtggctta
     6841 atgaactgac tgccagcgtt gaggccatga cggcagcggt aactatgcgc atcatttgct
     6901 cccaaaatct ttctgtcgcg attcaacgat agagagttta cgattcaggc tgcaaacatg
     6961 cgtcaggggg tgtaaaacaa cgtaaagtca tggattagcg acgtctgatg acgtaatttc
     7021 tgcctcggag gtatttaaac aatgaataaa atcctgttag ttgatgatga ccgagagctg
     7081 acttccctat taaaggagct gctcgagatg gaaggcttca acgtgattgt tgcccacgat
     7141 ggggaacagg cgcttgatct tctggacgac agcattgatt tacttttgct tgacgtaatg
     7201 atgccgaaga aaaatggtat cgacacatta aaagcacttc gccagacaca ccagacgcct
     7261 gtcattatgt tgacggcgcg cggcagtgaa cttgatcgcg ttctcggcct tgagctgggc
     7321 gcagatgact atctcccgaa accgtttaat gatcgtgagc tggtggcacg tattcgcgcg
     7381 atcctgcgcc gttcgcactg gagcgagcaa cagcaaaaca acgacaacgg ttcaccgaca
     7441 ctggaagttg atgccttagt gctgaatcca ggccgtcagg aagccagctt cgacgggcaa
     7501 acgctggagt taaccggtac tgagtttacc ctgctctatt tgctggcaca gcatctgggt
     7561 caggtggttt cccgtgaaca tttaagccag gaagtgttgg gcaaacgcct gacgcctttc
     7621 gaccgcgcta ttgatatgca catttccaac ctgcgtcgta aactgccgga tcgtaaagat
     7681 ggtcacccgt ggtttaaaac cttgcgtggt cgcggctatc tgatggtttc tgcttcatga
     7741 taggcagctt aaccgcgcgc atcttcgcca tcttctggct gacgctggcg ctggtgttga
     7801 tgttggtttt gatgttaccc aagctcgatt cacgccagat gaccgagctt ctggatagcg
     7861 aacagcgtca ggggctgatg attgagcagc atgtcgaagc ggagctggcg aacgatccgc
     7921 ccaacgattt aatgtggtgg cggcgtctgt tccgggcgat tgataagtgg gcaccgccag
     7981 gacagcgttt gttattggtg accaccgaag gccgcgtgat cggcgctgaa cgcagcgaaa
     8041 tgcagatcat tcgtaacttt attggtcagg ccgataacgc cgatcatccg cagaagaaaa
     8101 agtatggccg cgtggaactg gtcggtccgt tctccgtgcg tgatggcgaa gataattacc
     8161 aactttatct gattcgtccg gccagcagtt ctcaatccga tttcattaac ttactgtttg
     8221 accgcccgct attactgctg attgtcacca tgttggtcag tacgccgctg ctgttgtggt
     8281 tggcctggag tctggcaaaa ccggcgcgta agctgaaaaa cgctgccgat gaagttgccc
     8341 agggaaactt acgccagcac ccggaactgg aagcggggcc acaggaattc cttgccgcag
     8401 gtgccagttt taaccagatg gtcaccgcgc tggagcgcat gatgacctct cagcagcgtc
     8461 tgctttctga tatctctcac gagctgcgca ccccgctgac gcgtctgcaa ctgggtacgg
     8521 cgttactgcg ccgtcgtagc ggtgaaagca aggaactgga gcgtattgaa accgaagcgc
     8581 aacgtctgga cagcatgatc aacgatctgt tggtgatgtc acgtaatcag caaaaaaacg
     8641 cgctggttag cgaaaccatc aaagccaacc agttgtggag tgaagtgctg gataacgcgg
     8701 cgttcgaagc cgagcaaatg ggcaagtcgt tgacagttaa cttcccgcct gggccgtggc
     8761 cgctgtacgg caatccgaac gccctggaaa gtgcgctgga aaacattgtt cgtaatgctc
     8821 tgcgttattc ccatacgaag attgaagtgg gctttgcggt agataaagac ggtatcacca
     8881 ttacggtgga cgacgatggt cctggcgtta gcccggaaga tcgcgaacag attttccgtc
     8941 cgttctatcg gaccgatgaa gcacgcgatc gtgaatctgg cggtacagga ttggggctgg
     9001 cgattgttga aaccgccatt cagcagcatc gtggctgggt gaaggcagaa gacagcccgc
     9061 tgggcggttt acggctggtg atttggttgc cgctgtataa gcggagttaa actccgcatt
     9121 tgtaggcagg ataaggcgtt tacgccgcat ccggcatttg agcaggatgc ctgatgcgac
     9181 gctgatagcg tcttatcagg cctacactcc gggggttatt ttccccacaa ccggcgggga
     9241 aaatcttcga tcttgccgct cagtcggcgc ttttgcatcg tccgcgtcca gcttttcgat
     9301 aacccggcgg cggagagtaa acggtgatac tgatcgtcat caaacggcat atgccatgcg
     9361 atggcggcag cctcctgcac ggtcacatcg ctgacacggg aaaccaactc cagcggcgcg
     9421 tccgcagaca ctttccctgg cgctatcacg ctatacaacc accccacctt acctgtgttt
     9481 tgcatcaact gcgctatatc gctgatatca aaatggtaat tgagtttata gcaaggtgag
     9541 cgcggctggc tgacctgaat taatgcctct ccccagcgga aaatatcgcc catataaaca
     9601 ttactttccg tcaggccgtc ggttgagagg ttttcaccaa acgcaggcgc aacaaacaac
     9661 tccgcctgtt ccggaaattc ccgcgcccag tagagataat gctcacgagg ataatgacac
     9721 agcgctctgt ctggcccacc gtgaaccttt ttctccgcct gctcgtcacc ttccagcccc
     9781 agctccgtca gcatcaactc accatcaacc tggattttgg caattgcgct gggtttgcct
     9841 tcgggataag cctgaatctt gcctgtgtat acatcaaccg gatatcgcat ctgttccctc
     9901 tccacgagaa atttccccat tagaccatat ttattttatg tcaggcgtgc tgttttcgcg
     9961 gtaagtatcc aggcaggaac tcaatagcaa accggacgaa cgttagttca tccggctgtg
    10021 gggattaagg aagcaggttt atttcaccgt acctaaaatt tcgattttcg ctgctctggc
    10081 tttgacttta cgtgaccaga tagaggtaag aattggcacc agaatcgaag tcacaatgac
    10141 cgccgtcgct accgcggccc ctgcggaact ggaagcggca attccggcag tgccatcgcc
    10201 accgccaatc aatttatcgg cgataatcaa cggaataccg gtcacgataa ttactgccac
    10261 acccaacagg atccccagca aaccagtctg ggcaatcaca gtcaaatcaa tggtattgcc
    10321 cagcgcgaag gcaaagaatg gaatcagcgt ttgcaccgct ttgctgaaaa attctcgtaa
    10381 ttcagggtca aggttcccca gggcaaagcc caccaagaac ggtaatactg cgccgacgaa
    10441 aacatgcggt tcaaacgagg caatccctgc agtgcccaga ataatcatcg tcatgagcgg
    10501 cccggactcc aacgacatca acacaaatgc cccagcttct tcttttgtgc cgtactgctg
    10561 catgatggaa gcgtaaagtc cgccattggt catatccatc gccgccacca gcgccagcgt
    10621 tgaaagtccg gcaaagaatc caacttcaac accatgttcc ggaataatgc gcgaggcaat
    10681 tgccgcaacc acccacgcga cggcaatttt tgttaccacc agcgtaccgg atttacgcaa
    10741 taccgttccc gtcgcgctta attttattga cgcccccatg caaaaaaacc acaccgccag
    10801 aatggacacc gtaccggtaa tcatcccgtt ggtgaatgat ccaaaatatt tccccgcccc
    10861 cggcgagaag gtgtggcaca gtgcgccaag gaatagcggg acgagcatca tcccccccgg
    10921 gattttctca atcgagcgtt ttatctgcat ttccatcacc tgtcggcata tttttaaggg
    10981 ctgatgcgta attcctcaat ggagcatcag tgttgatgga aacgaagata gacattcatt
    11041 taatcaataa aagtgatcaa aaccacatca attgaaacgc tgttttattt ttatcggata
    11101 attgttttta ttttgaaatt gatcataaaa aaaccaccgc cgttggcgat ggttcatttt
    11161 ttaagctgat atgcggcgta aacgcctcat tgcagcaggc ggcaaatgat tattttttcg
    11221 ccgcgaaacg tgccgctgct tcatcccagt tcaccacgtt ccagaactct ttgatgtagt
    11281 cgggacggcg gttctggaat ttcaggtagt aagcatgttc ccacacatcc aggcccagaa
    11341 tcgggaagcc ggaagcgcca gaaatagctt cacccatcag cggggaatcc tggttagcag
    11401 tagaaaccac cgccagttta tcgcctttca gcaccagcca tgcccagccg gaaccaaagc
    11461 gggaagctgc cgctttctca aattctgctt tgaagttatc aacggagccg aagtcacgtt
    11521 cgatagccgc tttcaggtca ccctgtaagg tggtgccttt tttcagacct ttccagaaca
    11581 ggctgtggtt agcgtgaccg ccagcgttgt tgcgcagtac ggttttcttg tctgctggca
    11641 gctggtccag tttggtgatc agctcttcaa ccggcaggtt ggcaaattct ggcaggcttt
    11701 ccagcgccgc gttggcgttg ttgacgtagg tctgatggtg tttggtgtgg tggatttcca
    11761 tggtctgctt atcgaagtgc ggttccaggg catcgtaagc atacggcagg gatggcaggg
    11821 tatagctcat attcatctcc agtattgtcg ggcggccgat tgttaatgcg cgtaagcagt
    11881 tggttcatta tagttaatta aatgatattg aaaatgatta tcaatgccgt acttttcgta
    11941 agggtatggt tttgcaggaa aatgcccgag atgtgaagca aatcacccac ttaatgccgt
    12001 gattgccagt aaatcgacaa cggcggcaac aggcgaaagg ttaatcgaca gcacgatttt
    12061 tacactcatc tcgtcggaga tgtgacgcga cgaaaaatga tgaggataag aagatgagta
    12121 acgcgattac gatggggata ttttggcatt tgatcggcgc ggccagtgca gcctgttttt
    12181 acgctccgtt caaaaaagta aaaaaatggt catgggaaac catgtggtca gttggtggga
    12241 ttgtttcgtg gattattctg ccgtgggcca tcagcgccct gttactgccg aatttctggg
    12301 cgtattacag ctcgtttagt ctctctacgc tgctgcctgt ttttctgttc ggcgctatgt
    12361 gggggatcgg taatatcaac tacggcctga ccatgcgtta tctcggcatg tcgatgggaa
    12421 ttggcatcgc cattggcatt acgttgattg tcggtacgct gatgacgcca attatcaacg
    12481 gcaatttcga tgttctgctt aataccgaag gcggacgcat gacgttgctc ggcgttctgg
    12541 tggcgctgat tggtgtaggg attgtgactc gcgccgggca gttgaaagag cgcaaaatgg
    12601 gcattaaagc cgaagagttc aacctgaaaa aagggctggt gctggcggtg atgtgcggca
    12661 ttttctctgc cggtatgtct tttgcgatga acgccgcaaa accgatgcat gaagccgctg
    12721 ccgcactggg cgtcgatcca ctgtatgtcg ctctgccaag ctatgtcatc atcatgggcg
    12781 gcggcgcgat catcaacctc ggtttctgct tcattcgtct ggcaaaagtg aaggatttgt
    12841 cgctaaaagc cgacttctcg ctggcaaaac cgctgatcat tcacaatgtg ttactctcag
    12901 cactgggcgg gttgatgtgg tatctgcaat tctttttcta tgcctggggc cacgcccgca
    12961 ttccggcgca gtatgactac atcagttgga tgctgcatat gagtttctat gtattgtgcg
    13021 gcggtatcgt cgggctggtg ctgaaagagt ggaacaatgc aggtcgccgt ccggtaacgg
    13081 tgttgagcct cggttgtgtg gtgattattg tcgccgccaa catcgtcggc atcggcatgg
    13141 cgaattaatc tttctgcgaa ttgagatgac gccactggct gggcgtcatc ccggtttccc
    13201 gggtaaacac caccgaaaaa tagttactat cttcaaagcc acattcggtc gaaatatcac
    13261 tgattaacag gcggctatgc tggagaagat attgcgcatg acacactctg acctgccgca
    13321 gatattgatt gatggtcatt ccagtctgct ggcgaaattg ctgacgcaaa acgcgctcac
    13381 tgcacgatgc ctcatcacaa aatttatcca gcgcaaaggg acttttcagg ctagccgcca
    13441 gccgggtaat cagcttatcc agcaacgttt cgctggatgt tggcggcaac gaatcactgg
    13501 tgtaacgatg gcgattcagc aacatcacca actgcccgaa cagcaactca gccatttcgt
    13561 tagcaaacga cacatgctga ctactttcat gctcaagctg accgataacc tgccgcgcct
    13621 gcgccatccc cacgctacct aagcgccagt gtggttgccc tgcgctggcg ctaaatcccg
    13681 gaatcgctcc ctgccagtca agattcagct tcagccgctc cgggcaataa ataatattct
    13741 gcaaaaccag atcgttaacg gaagcgtagg agtgtttatc gtcagcatga atgtaaaaga
    13801 gatcgccacg ggtaatgcga taagggcgat cgttgagtac atgcagacca ttaccgcgcc
    13861 agacaatcac cagctcacaa aaatcatgtg tatgttcggc aaaaacatct tgcggataac
    13921 ggtcagccac agcgactgcc tgctggtcgc tggcaaaaaa atcatctttg agaagtttta
    13981 actgatgcgc caccgtggct acctcggcca gagaacgaag ttgattattc gcaatatggc
    14041 gtacaaatac gttgagaaga ttcgcgttat tgcagaaagc catcccgtcc ctggcgaata
    14101 tcacgcggtg accagttaaa ctctcggtga aaaagcgtcg aaaagtggtt actgtcgctg
    14161 aatccgcagc gataggcgat gtcagtaacg ctggcctcgc tgtgacgtag cagatgtcgg
    14221 gccttcatca gtcgcaggcg gttcaggtaa cgctgaggcg tcagtcccgt ttgctgctta
    14281 agctgccgat gtagcgtacg cagtgaaaga gaaaattgat ccgccacggc atcccaattc
    14341 acctcatcgg caaaatggtc ctccagccag gccagaagca agttgagacg tgatgcgctg
    14401 ttttccaggt tctcctgcaa actgctttta cgcagcaaga gcagtaattg cataaacaag
    14461 atctcgcgac tggcggtcga gggtaaatca ttttcccctt cctgctgttc catctgtgca
    14521 accagctgtc gcacctgctg caatacgctg tggttaacgc gccagtgaga cggatactgc
    14581 ccatccagtt cttgtggcag caactgattc agcccggcga gaaactgaaa tcgatccggc
    14641 gagcgataca gcacattggt cagacacaga ttatcggtat gttcatacag atgccgatca
    14701 tgatcgcgta cgaaacagac cgtgccaccg gtgatggtat agggctgccc attaaacaca
    14761 tgaatacccg tgccatgttc gacaatcaca atttcatgaa aatcatgatg atgttcagga
    14821 aaatccgcct gcgggagccg gggttctatc gccacggacg cgttaccaga cggaaaaaaa
    14881 tccacactat gtaatacggt catactggcc tcctgatgtc gtcaacacgg cgaaatagta
    14941 atcacgaggt caggttctta ccttaaattt tcgacggaaa accacgtaaa aaacgtcgat
    15001 ttttcaagat acagcgtgaa ttttcaggaa atgcggtgag catcacatca ccacaatgaa
    15061 gcaaattgtg aacatcatca cgttcatctt tccctggttg ccaatggccc attttcctgt
    15121 cagtaacgag aaggtcacga attcaggcgc tttttagact ggtcgtaatg aaattcagca
    15181 ggatcacatt atgacctttc gcaattgtgt cgccgtcgat ctcggcgcat ccagtgggcg
    15241 cgtgatgctg gcgcgttacg agcgtgaatg ccgcagcctg acgctgcgcg aaatccatca
    15301 ttttaacaat ggcctgcata gccagaacgg ttatgtcacc tggaatgtgg atagcctgga
    15361 aagtgccatt cgccttggat taaacaaggt gtgcgaggaa gggattcgta tcgatagcat
    15421 tgggattgat acctggggcg tggactttgt gctgctcgac caacagggtc agcgtgtggg
    15481 cctgcccgtt gcttatcgcg atagccgctc caatggccta atggcgcagg cacagcaaca
    15541 actcggcaaa cgcgatattt atcaacgtag cggcatccag tttctgccct tcaatacgct
    15601 ttatcaactg cgtgcgctga cggagcaaca acctgaactt attccacaca ttgctcacgc
    15661 tctgctgatg ccggattact tcagctatcg cctgaccggc aagatgaact gggaatatac
    15721 caatgccacc accacacaac tggtcaatat caatagcgac gactgggacg agtcgctact
    15781 ggcgtggagc ggggccaaca aagcctggtt tggtcgcccg acgcatccgg gtaatgtcat
    15841 tgggcactgg atttgcccgc agggtaatga gattccggtg gtcgccgttg ccagccatga
    15901 taccgccagc gcggttatcg cctcgccgtt aaacggttca cgcgctgctt atctctcttc
    15961 tggcacctgg tcattgatgg gcttcgaaag ccagacgcca tttaccaatg acacggcgct
    16021 ggcagccaac ataaccaatg aaggcggggc ggaaggtcgc tatcgggtgc tgaaaaatat
    16081 tatgggctta tggctgcttc agcgagtgct tcaggagcgg caaatcaacg atctcccggc
    16141 gcactatctc tcccactgcg agcgcattaa agccaccaac ggtaaagatc gggtgatcat
    16201 gcactgccac gccaccaacc tgatcgccct cacctatgta ctggaaaacg acaccgcggt
    16261 ctttactcgc caactgtggg aaggcagcac cgagtgtctg gtggtattcc cggatggcgt
    16321 tggcattctg ccgtggatgg tgcccggcac ggacgaaatc ggccaggcga ccgcacaaga
    16381 gatgcaaaaa cattcgctgg tgttgtggcc cttccacggc gtcttcggca gcgggtcgac
    16441 gttggatgaa acattcggtt taatcgacac cgcagaaaaa tcagcacaag tattagtgaa
    16501 ggtttattcg atgggcggca tgaaacagac catcagccgt gaagagttga tagcgctcgg
    16561 caagcgcttc ggcgttacac cactagccag tgcgctggcg ctgtaaggag caaacatgat
    16621 ccgcaaagcc tttgtcatgc aggttaaccc cgacgcccac gaagagtatc agcgtcggca
    16681 taaccccatc tggccggaac tggaagcagt gttgaaatct cacggtgcgc ataactacgc
    16741 catttacctc gacaaagcgc gtaatctgct gtttgccacg gtagagattg aatctgaaga
    16801 acggtggaat gcggtagcca gtactgatgt ttgccaacgt tggtggaaat atatgaccga
    16861 tgttatgccc gctaacccgg ataacagccc ggtgagtagc gagctgc
//
LOCUS       DAJVUN010000079        16876 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.079, whole genome shotgun sequence.
ACCESSION   DAJVUN010000079 DAJVUN010000000
VERSION     DAJVUN010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16876
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.079"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            104..1237
                     /gene="fepE"
                     /locus_tag="OQQ76_002230"
     CDS             104..1237
                     /gene="fepE"
                     /locus_tag="OQQ76_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
                     /protein_id="HCS1968717.1"
                     /translation="MSSLNIKQGSDAHFSEYPLASPSSNEIDLLNLIEVLWRAKKTVM
                     AVVFAFACAGLLISFILPQKWTSSAVITPAEAIQWQDLEKTFTKLRVLDLDVNIDRGG
                     AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS
                     KKKDEPSLYTSWTLSFTAPTSKEAQTVLSGYIDYISALVVKESIENVRNKLEIKTQFE
                     KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD
                     GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKANVNDVNFTPFKYQLSPSLPVKKD
                     GPGKAIIVILSALIGGMVACGSVLLRYAMASRKQDAMMADHLV"
     gene            complement(1234..2049)
                     /gene="fepC"
                     /locus_tag="OQQ76_002231"
     CDS             complement(1234..2049)
                     /gene="fepC"
                     /locus_tag="OQQ76_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter ATP-binding
                     protein"
                     /protein_id="HCS1968718.1"
                     /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC
                     GKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV
                     ARGRYPHQPLFTHWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ
                     ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR
                     EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLERTAPSTANS"
     gene            complement(2046..3038)
                     /gene="fepG"
                     /locus_tag="OQQ76_002232"
     CDS             complement(2046..3038)
                     /gene="fepG"
                     /locus_tag="OQQ76_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter permease"
                     /protein_id="HCS1968719.1"
                     /translation="MIYVSRRLLITCLLLISACVVAGIWGLRSGAVTLETSQVFAALM
                     GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS
                     GVLVAMVLFGQDLTAIALAAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA
                     FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLE
                     MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW
                     GLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK"
     gene            complement(3035..4039)
                     /gene="fepD"
                     /locus_tag="OQQ76_002233"
     CDS             complement(3035..4039)
                     /gene="fepD"
                     /locus_tag="OQQ76_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-siderophore ABC transporter permease"
                     /protein_id="HCS1968720.1"
                     /translation="MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSFPASVVLEAF
                     SGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGAS
                     FAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA
                     VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALN
                     SLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGA
                     DHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA
                     "
     gene            4150..5400
                     /gene="entS"
                     /locus_tag="OQQ76_002234"
     CDS             4150..5400
                     /gene="entS"
                     /locus_tag="OQQ76_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin transporter EntS"
                     /protein_id="HCS1968721.1"
                     /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI
                     QMMTHSTWQVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN
                     ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGALTMLTVRLGSV
                     ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFR
                     FLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAEIGFLYAAIPLGAAIGAL
                     TSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYT
                     MLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV
                     LLLLVLVELRRFRQTPPQVTASDS"
     gene            complement(5404..6360)
                     /gene="fepB"
                     /locus_tag="OQQ76_002235"
     CDS             complement(5404..6360)
                     /gene="fepB"
                     /locus_tag="OQQ76_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-enterobactin ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS1968722.1"
                     /translation="MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLES
                     QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY
                     IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG
                     EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM
                     LEQLGFTLAKLPTGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIY
                     ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERLKALF"
     gene            6735..7910
                     /gene="entC"
                     /locus_tag="OQQ76_002236"
     CDS             6735..7910
                     /gene="entC"
                     /locus_tag="OQQ76_002236"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase EntC"
                     /protein_id="HCS1968723.1"
                     /translation="MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAV
                     NGDSPDSPFQQKLAALFADAKVQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEK
                     QASARRFTRSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDA
                     AIDSGVLLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR
                     QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWH
                     LATPFEGKANSQENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWC
                     DSEGNGEWVVTIRCAKLRENQVRLFAGAGIVPASSPLGEWRETGVKLSTMLNVFGLH"
     gene            7920..9530
                     /gene="entE"
                     /locus_tag="OQQ76_002237"
     CDS             7920..9530
                     /gene="entE"
                     /locus_tag="OQQ76_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2,3-dihydroxybenzoyl)adenylate synthase EntE"
                     /protein_id="HCS1968724.1"
                     /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID
                     GELQLSYRELNQAADNLACTLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL
                     ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLHNDSGE
                     HNLQDAINHPADGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC
                     QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVT
                     ALVSPAVSLWLQALAEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM
                     AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR
                     GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL
                     LLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE
                     CVDSLPLTAVGKVDKKQLSQWLASRASA"
     gene            9544..10401
                     /gene="entB"
                     /locus_tag="OQQ76_002238"
     CDS             9544..10401
                     /gene="entB"
                     /locus_tag="OQQ76_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis bifunctional
                     isochorismatase/aryl carrier protein EntB"
                     /protein_id="HCS1968725.1"
                     /translation="MAIPKLQAYALPESHDIPQNKVDWAFELQRAALLIHDMQDYFVS
                     FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTVQPKEQSDEDRALLNDMWGPGLTRS
                     PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT
                     ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPVPASKAAL
                     REVILPFLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW
                     WKLLSREVK"
     gene            10401..11147
                     /gene="entA"
                     /locus_tag="OQQ76_002239"
     CDS             10401..11147
                     /gene="entA"
                     /locus_tag="OQQ76_002239"
                     /EC_number="1.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
                     EntA"
                     /protein_id="HCS1968726.1"
                     /translation="MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY
                     PFATEVMDVADAGQVAQVCQRLLAETERLDVLINAAGILRMGATDQLSKEDWQQTFAV
                     NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL
                     ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI
                     ANTILFLASDLASHITLQDIVVDGGSTLGA"
     gene            11150..11563
                     /gene="entH"
                     /locus_tag="OQQ76_002240"
     CDS             11150..11563
                     /gene="entH"
                     /locus_tag="OQQ76_002240"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proofreading thioesterase EntH"
                     /protein_id="HCS1968727.1"
                     /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDT
                     RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC
                     QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG"
     gene            11744..13849
                     /gene="cstA"
                     /locus_tag="OQQ76_002241"
     CDS             11744..13849
                     /gene="cstA"
                     /locus_tag="OQQ76_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein CstA"
                     /protein_id="HCS1968728.1"
                     /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI
                     YLIAYRFYGLYIAKNVLAVDPKRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG
                     VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRI
                     GEVSVIGLVFLIFAIISGGRVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL
                     APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA
                     CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA
                     MNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL
                     AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG
                     LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC
                     AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSG
                     NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP
                     YEPMPENVEEIVAQAKGAH"
     gene            14031..14228
                     /locus_tag="OQQ76_002242"
     CDS             14031..14228
                     /locus_tag="OQQ76_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HCS1968729.1"
                     /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY
                     EEFFRERQDARYGGKGGARCC"
     gene            complement(14238..15326)
                     /gene="hcxA"
                     /locus_tag="OQQ76_002243"
     CDS             complement(14238..15326)
                     /gene="hcxA"
                     /locus_tag="OQQ76_002243"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcxA"
                     /protein_id="HCS1968730.1"
                     /translation="MPHNPIRVVVGPANYFSHPRSFNHLNDFFTDEQLSRAVWIYGKR
                     AIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA
                     KALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
                     NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIHDVLLNSSEQALA
                     DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT
                     KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP
                     VESIHYLPVTLTPDTLRAAFEKVESFKA"
     gene            15435..16584
                     /gene="ybdL"
                     /locus_tag="OQQ76_002244"
                     /pseudo
     CDS             15435..16584
                     /gene="ybdL"
                     /locus_tag="OQQ76_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308666.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-oxo-acid transaminase"
     gene            complement(16585..>16876)
                     /locus_tag="OQQ76_002245"
     CDS             complement(16585..>16876)
                     /locus_tag="OQQ76_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HCS1968731.1"
                     /translation="SSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMS
                     EIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK"
BASE COUNT         3721 a         4405 c         4845 g         3905 t
ORIGIN      
        1 tggaaggaat ttacaaactt cagcttcgga taatttctca ccaactggta aagtgagcgc
       61 cgtggagatt tccccctatt ggactcattt tcaggttata cccatgtcat cactgaatat
      121 taaacaggga agtgacgctc atttttccga gtatcctctg gcgtcgccca gtagtaatga
      181 aattgattta cttaatctaa tcgaagtttt atggcgggcc aaaaaaacgg tcatggcggt
      241 cgtttttgca tttgcctgcg caggtttact gatctctttc atcctgccgc aaaaatggac
      301 cagctcagcc gttattactc ccgccgaagc cattcagtgg caggacctgg agaaaacctt
      361 taccaaactc cgcgttcttg atctcgatgt taatatcgac cgtggcggtg catttaacct
      421 gtttatcaag aagtttcagt ccgttagctt gctggaagag tacctgcgtt catcacctta
      481 tgtgatggac caattaaaag aggcgaaaat cgatgaactg gatttgcatc gcgctattgt
      541 tgcattgagc gaaaaaatga aagcggttga tgacaatgcc agtaagaaaa aagatgaacc
      601 gtcactgtat acctcctgga cgctaagttt taccgcgcca accagtaaag aggcgcagac
      661 cgttttgagc gggtatatcg attatatctc tgcgttggtg gtgaaagagt cgatagaaaa
      721 cgtccgtaat aaactggaga tcaaaaccca gtttgaaaaa gaaaaactgg ctcaggatcg
      781 cattaaaacg aaaaatcaac ttgatgcaaa cattcagcgc ctcaattatt ctctcgacat
      841 tgccaacgcg gcaggaatta aaaagcccgt atacagtaat ggtcaggccg ttaaagatga
      901 ccccgatttc tctatttctc tcggcgcaga cggtattgaa cgcaaactgg aaattgaaaa
      961 agcggttact gacgttgcgg aactgaacgg tgaattacgt aatcggcagt atcttgtcga
     1021 gcaattaaca aaagcaaatg tcaacgatgt gaattttacg ccgtttaaat atcagttaag
     1081 cccgtcattg ccagtgaaaa aagacggtcc gggtaaggcg attattgtga tcctttccgc
     1141 gctgatcggc gggatggtgg cttgtggtag cgtgttattg cgctatgcga tggcatccag
     1201 aaaacaggat gccatgatgg cagaccactt agtttaacta tttgcggttg aaggtgccgt
     1261 tcgttcgagc ggcaccacaa gcggcgttcc ggctaccgga tcgtcaatga tcatgcatcg
     1321 cagaccataa atgcgctcaa tcagttcagc agtgacaatc tccttcggcg ctccctgagc
     1381 aacaattttc ccttcccgca atgcaatcaa atggctggcg taacgacagg cctgattaag
     1441 atcgtgcagc accgccgcca gggtatagcc tttctcgcgg ttcagttcgc ttaacagttc
     1501 cagtagatca atctgatgac tgatatccag ccaggtcgtg ggttcgtcga gcagcataat
     1561 tgccgtttcc tgggccagca ccatcgcgat ccacgctcgc tggcgttgtc cgccagaaag
     1621 ggtatccacg ctttgatctg ccagatgagt tattcccgtg gcctgcatcg ctttcgttac
     1681 cgcttcttca tcctctttgc gccagtgggt aaacagcggt tgatgcggat aacgtccacg
     1741 cgccaccagc tcctgcacgg tgatatcgcc cggcgtggta gcattttgcg ccaacagacc
     1801 aatccggcgt gcaacttctt tactggcgta atgttgaatg tgctcgccat ccagccagac
     1861 atgcccgtga gcaggcgtca tcaggcggct taaggtacgc agtaacgtgg atttaccaca
     1921 gccatttggt ccgataattg ccgtgaagtg accatcagga atttctacag tcagattttc
     1981 cgcaacggta tatttgccat atcccagggt taactgttcg ccgcgcaaac gggctactga
     2041 ttcggtcatt ttttgcgaga ctcctgaatt aacaagacga taaggtaaat accgccgagg
     2101 ctgacggtaa cgacgccaac cggaagttga tacggcataa acagttgttg ggcgcagaga
     2161 tcggccgcca gcagtaacag cgctccgcac agcgccgcct gggtcagccc ccagcgagcg
     2221 gtgccgctaa tgcgtcgggc aatgtgcggc gcgactaaag caataaagga aatcggcccg
     2281 gcaagcgccg ttgccgcagc ggtaagcacc actgcaacca gcatcattaa cagacgcgaa
     2341 cgctcgacgc tgacgcccag cgcgcaggcg gtatcatcgc ccatctccag caagcgcatt
     2401 cgccgcacca gcaaggcggc ggcaatgagc atcaatataa tgatgggtgc ggaaggcgaa
     2461 gtttttgccc acgtcaggcc attgagcgat ccggcattcc acaaacccgc tgttagcgcc
     2521 gtttctaaag acgctttcag caacagccaa gtattaaagg ccaccagcat ggcgcgaacg
     2581 ccgatgccga taataatcaa ccgaaaggtg tcgataccgt tacgccaggc gagcagccag
     2641 accaacagag aagtgacaat gccgcccacc attgctgcca gcgcgatagc cgtcaggtcc
     2701 tgaccaaaca gcaccatcgc caccagcacg ccgctccacg ccccggtgtt aaagcccatt
     2761 acgtcagggc tgccgagcgg gttacgcatc agcgactgaa aaatcgcacc gctgacgccc
     2821 agtgccgcgc caatcaacag cgccatcagc acgcgtggta aacgccattc ggtgaccacc
     2881 atcgtcatac tgcgcggcgc atcgcccatc agcgcggcga atacctgcga ggtttccagc
     2941 gtgacggcac cgctgcgtaa tccccagata cctgcaacca cacaggcgga aataagcagc
     3001 aaacaggtga tgagtaatcg gcgagagacg taaatcatgc accacctcgc gttttacgtc
     3061 gcacgaggaa gatcagcacc ggtgcaccaa taaaggcact gaccacagaa acgcgcagtt
     3121 caccgggcac aatcacccgc ccgatgatat cggcaaacag cagcagggca ggggtagcaa
     3181 gcagcgttac gggcagcgac cagcgatgat cggcacccac cagccaacgc gccatatgcg
     3241 gcatcatcag gccaataaag gcaatcgggc caactaccgc tgtcgcacta ccacaaagca
     3301 cggtaatcgc cagcagacca attaactgtg tgcgcgccac gcgactgccc agcgccgtcg
     3361 cggtgtcgct gccgaggctt aaactgttca gcgcgcggct cagtaatagc gcggttgctc
     3421 cggcgatcag caccgggatc agcaccactt ttaaggtatg tagattgcga atatccagcg
     3481 aaccggcttg ccagaaacgc agttgatcgt agacgtcagg attaagcagg gcgatgccgc
     3541 tggtcagccc ttccagcact gccgccagcg ccacgcccgc cagggttaaa cgcaccggac
     3601 ttaactgccc gccgccctga ctgccggtaa aggcaacaat caatgaggcc accagcgccc
     3661 cggcgaaggc catcgccagt tgttcctgcg cggatgagta accaaacagc gccgcaccca
     3721 gcacaatggc aaagctggct ccggcgttca cgccaagcaa gccggggtcg gcaagtggat
     3781 ttcgggtgag ggtttgcatc aacgccccgg caaggccaag cgcgccgcct gccagtaaac
     3841 cggcaagggt gcgcggcagt cgcgcgtcga gcacgatggt gcagtcggcg ctctggcagg
     3901 tgccggagaa ggcctccagc actacggaag cggggaatga ttttgctcca atgagcaggc
     3961 ttaatgccgt cgcgataatc agtaataaca gcaatccggg cacggcaatg gcgcgtgtca
     4021 cggcaacaga accagacata tgaacttcca tgataatgaa attaattatc gttatcgatc
     4081 ttatttggat atgttagcat gtgcagccta agaataggta tttaaaatat ttgatggcaa
     4141 ggcattgtaa tgaataaaca atcctggctg cttaacctca gcctgttgaa aacgcacccg
     4201 gcgtttcgcg cagtattcct cgctcgtttt atctcaattg tgtctctggg tttgctcggc
     4261 gtcgcggtgc cggtgcagat ccagatgatg acgcattcta cctggcaggt ggggctttcg
     4321 gtgacgctga ccggcggcgc gatgtttgtt ggcctgatgg ttggcggtgt gctggcggat
     4381 cgctatgagc gcaaaaaagt gattttgctg gcgcgcggca cctgtggcat tggcttcatt
     4441 ggactgtgcc ttaatgcact gctgccggag ccgtcattgc tggcaatcta tttacttggt
     4501 ttatgggatg gttttttcgc atcgcttggc gttacggcgc tattggcggc gacaccagca
     4561 ctggtagggc gtgaaaactt aatgcaggcc ggggcgctca ccatgttgac cgtgcgtctg
     4621 gggtcggtga tttcgcccat gattggcggt ttattgctgg cgaccggtgg cgtagcctgg
     4681 aactacgggc tggcggcggc gggcacgttt attaccttgc taccgttgtt aagccttccg
     4741 gcgttgccac cgccaccgca gccgcgcgag catccgttga aatcattact ggcaggattt
     4801 cgttttctgc tcgccagccc gctggtgggc gggattgcgt tgctgggtgg tttattgacg
     4861 atggcgagcg cggtgcgggt actgtatccg gcgctggctg acaactggca gatgtcggcg
     4921 gcagagattg gttttctcta tgcggcgatc ccgctcggtg cggctattgg cgcattaacc
     4981 agtgggaaac tggcgcatag cgcgcgacca ggattgttga tgttgctctc cacgttggga
     5041 tcgttcctcg ccattggttt atttggcctg atgccgatgt ggattttagg cgtggtttgt
     5101 ctggcgctgt tcggctggct gagtgcggtc agttcgttgc tgcaatatac aatgctgcaa
     5161 acgcaaacgc cggaagcaat gttagggcga attaacggtt tgtggacggc acaaaacgtg
     5221 acgggcgatg ccataggcgc ggcgctgtta ggcggtctgg gagcgatgat gacaccggtt
     5281 gcttccgcaa gcgcgagcgg ttttggtttg ttgattatcg gcgtgttgtt attgctggtg
     5341 ctggtggagt tgcgacgttt tcgccagacg ccgccgcagg tgacagcgtc cgacagttaa
     5401 tgcttaaaac agcgccttaa gtcgttccag cacttgcatg gcgctgtagt aatccaggcg
     5461 gaacgtctcg gttcccagcg cataaacctg cttgttttgt actgcgggca ggtgcgcgag
     5521 cagtggattg gcatatatcg catcggcgtc tttctgatca ccggcgaaca ggaatagtga
     5581 ctcgccattt aaccctgcag ccagattttc tccaccaagc tgaatgatgt catggcgttt
     5641 gccctggctt tggctggcgt ttaaccctgt gggcaatttc gccagcgtaa agccgagttg
     5701 ttccagcatc tgcccttgtg ctgattccgg cgtccagaga ttggcactgt gtgcagcggc
     5761 ggtatagaca atagcagtga ccggctgcgg cggtaatttg atttgctctt tcgccgctgc
     5821 cagttgctta tcaaactgtg caatccgctc tgccgcttgt ttctcatgcc cggtaatttc
     5881 gccaagctgc gttaacagcg actgccagct tttgtcgtcg taattgatga ttaatgtcgg
     5941 ggcgatggtg gaaagctgat catacagcgc cagcgccgaa tccccgccgg ttgcgctaat
     6001 taaaatcaga tccggcattt gcgcggcaac ggcttcggcg ctcggttcgc cgatatagag
     6061 ccgttgtagt ttgcgttctt tcgccacctt gctccactgg cgtaaaaagc cctggtcatc
     6121 cgcgacgcgg ttatttggcg tggtcgcgcc gctggcaatc accggagcat caatcgccag
     6181 cagtgagccg gtcagggtga cgctggtgga aacaatacgc tgcggctggc tttccagggt
     6241 atgagtgccc cggctgtcag taatctgacg cggccagtcg gcggcctgaa ctgcggctat
     6301 tccggaaagc aaaagtcctg ttaatagaag ggcgttgcgg tagagcgggg cgagtctcac
     6361 aaatcagctt cctgttatta ataaggttaa gggcgtaatg acaaattcga caaagcgcac
     6421 tatccgtacc ctcgcccctt tggggagagg gttaggggga tgggaacagc cagcactggt
     6481 gcgaatattg accctcaccc cagccctctc cctggaaggg agagggggaa gaacggcgca
     6541 ggacatcaca ttgcgcttat gcgaatccat caataatgct tctcattttc attgtaacca
     6601 caaccagatg caaccccgag ttgcagattg cgttacctca agagttgaca tagtgcgcgt
     6661 ttgcttttag gttagcgacc gaaaatataa atgataatca ttattaaagc ctttatcatt
     6721 ttgtggagga tgatatggat acgtcactgg ctgaggaagt acagcagacc atggcaacac
     6781 ttgcgcccaa tcgctttttc tttatgtcgc cgtaccgcag ttttacgacg tcaggatgtt
     6841 tcgcccgctt tgatgaaccg gctgtgaacg gggattcgcc cgacagtccc ttccagcaaa
     6901 aactcgccgc gctgtttgcc gatgccaaag tgcagggcat caaaaatccg gtgatggtcg
     6961 gggcgattcc cttcgatcca cgtcagcctt cgtcgctgta tattcctgaa tcctggcagt
     7021 cgttctcccg tcaggaaaaa caagcttccg cccgccgttt cacccgcagc cagtcgctga
     7081 atgtggtgga acgccaggca attccggaac aaaccacgtt tgaacagatg gttgcccgcg
     7141 ctgccgcact taccgccacg ccgcaggtcg acaaagtggt gttgtcacgg ttgattgata
     7201 tcaccactga cgccgccatt gatagtggcg tattgctgga acggttgatt gcgcaaaacc
     7261 cggttagtta caacttccat gtcccgctgg ctgatggtgg cgtcctgctg ggggccagcc
     7321 cggaactgct gctacgtaaa gacggcgagc gttttagctc cattccgtta gccggttccg
     7381 cgcgtcgtca gccggatgaa gtgctcgatc gcgaagcggg taatcgtctg ctggcgtcag
     7441 aaaaagatcg ccatgaacat gaactggtga ctcaggcgat gaaagaggta ctgcgcgaac
     7501 gcagtagtga gttacacgtt ccctcctctc cacaattgat taccacgccg acgctgtggc
     7561 atctcgcaac tccctttgaa ggtaaagcga attcgcaaga aaacgcactg actctggcct
     7621 gtctgctgca tccgaccccc gcgctgagcg gtttcccgca tcaggccgcg actcaggtta
     7681 ttgctgaact ggagccgttc gaccgcgaac tgtttggcgg cattgtgggt tggtgtgaca
     7741 gcgaaggtaa cggcgaatgg gtggtgacca tccgctgcgc gaagctgcgg gaaaatcagg
     7801 tgcgtctgtt tgccggagcg gggattgtgc ctgcgtcgtc accgttgggt gagtggcgcg
     7861 aaacaggcgt caaactttct accatgttga atgtttttgg attgcattaa ggagcgagga
     7921 tgagcattcc attcacccgc tggccggaag agtttgcccg tcgctatcgg gaaaaaggct
     7981 actggcagga tttgccgctg accgacattc tgactcgcca cgctgcgagt gacagcatcg
     8041 cggttatcga cggcgagcta cagttgagtt accgggagct gaatcaggcg gcggataacc
     8101 tcgcgtgtac tttacgccgt cagggcatta aacctggtga aaccgcgctg gtacaactgg
     8161 gtaacgtcgc tgaattgtat attacctttt tcgcgctgct gaaactgggc gttgcgccgg
     8221 tgctggcgtt gttcagccat cagcgtagtg aactgaacgc ctatgccagc cagattgaac
     8281 ccgcattgct gattgccgat cgccaacatg cgctgtttag cggggatgat ttcctcaata
     8341 ctttcgtcac agaacattcc tccattcgcg tggtgcaact gcacaacgac agcggtgagc
     8401 ataacttgca ggatgcgatt aaccatccgg cagacggttt tactgccacg ccatcacctg
     8461 ctgatgaagt ggcctatttc cagctttccg gcggcaccac cggtacaccg aagctgatcc
     8521 cgcgcactca taacgactac tactacagcg tgcgtcgtag cgtcgagatt tgtcagttca
     8581 cacaacagac gcgctacctg tgcgcgatcc cggcggctca taactacgcc atgagttcgc
     8641 caggatcgct gggcgtcttt cttgccggag gaacggttgt tctggcggcc gatcccagcg
     8701 ctacgctttg cttcccattg attgaaaaac atcaggtgaa cgtcaccgcg ctggtgtcgc
     8761 cggcagtcag cctgtggttg caggcgctgg ctgaaggcga aagccgggcg cagcttgcct
     8821 cgctgaaact gttacaggtc ggcggcgcac gtctttctgc cacccttgcg gcgcgtattc
     8881 ccgctgagat tggctgccag ttgcagcagg tgtttggcat ggcggaaggg ctggtgaact
     8941 acacccgtct tgatgatagc gcggagaaaa ttatccatac ccagggttac ccaatgtgtc
     9001 cggacgatga agtgtgggtt gccgatgccg aaggaaatcc actgccgcaa ggggaagtcg
     9061 gacgcctgat gacgcgcggg ccgtacacct tccgcggtta ttacaaaagt ccgcagcaca
     9121 atgccagcgc ctttgatgcc aacggttttt actgttccgg cgatctgatc tctattgatc
     9181 cagagggtta catcaccgtg caggggcgcg agaaagatca gatcaaccgt ggcggcgaga
     9241 agatcgctgc cgaagagatc gaaaacctgc tgctgcgcca tccggcggtg atctatgccg
     9301 cactggtgag catggaagat gagctgatgg gcgaaaaaag ctgtgcttat ctggtggtaa
     9361 aagagccgct gcgcgcggtg caggtgcgtc gtttcctgcg tgaacagggt attgccgaat
     9421 ttaaattacc ggatcgcgtg gagtgtgtag attcacttcc gctgacggcg gtcgggaaag
     9481 tcgataaaaa acaattaagt cagtggctgg cgtcacgcgc atcagcctga aggagagaac
     9541 acgatggcta ttccaaaatt acaggcttac gcactgccgg agtctcacga tattccgcag
     9601 aataaagttg actgggcctt tgaactgcaa cgtgccgcgt tgttaatcca tgatatgcag
     9661 gactattttg tcagcttctg gggcgagaac tgcccgatga tggagcaggt gatcgcgaat
     9721 attgctgcgc tgcgcgacta ctgcaaacag cacaatatcc cggtttatta caccgtccag
     9781 ccgaaagagc agagcgatga agatcgggcg ctgttgaatg atatgtgggg gccgggcctg
     9841 acccgttcgc cggaacagca aaaggtggtg gatcgcctga cgccagatgc cgacgacacg
     9901 gtgctggtga agtggcgcta cagcgcgttt catcgttctc cgctggagca aatgctcaaa
     9961 gagagtggac gtaaccagct gattattacc ggggtatatg cccacattgg ctgtatgacc
    10021 accgcaaccg acgcatttat gcgcgatatt aaaccgttta tggtggcgga tgcgctggcc
    10081 gatttcagcc gtgacgagca tttgatgtcg ctgaaatatg tggccgggcg gtctggccgg
    10141 gtggtgatga ctgaagaatt actgccagca cctgtccccg ccagcaaagc ggcgctgcgt
    10201 gaggttatcc tgccgtttct ggacgagtcc gatgaaccgt tcgatgacga caacctgatc
    10261 gactacggtc tggattcggt gcgcatgatg gcgctggcgg cgcgctggcg caaagtgcat
    10321 ggtgatatcg actttgtcat gctggcgaaa aacccgacca tcgacgcctg gtggaagcta
    10381 ctctcccgcg aggttaaata atggatttca gcggtaaaaa tgtctgggta accggcgcag
    10441 gtaaaggtat cggctacgcc acggcgctgg cgtttgttga ggcgggagcg aaagttacag
    10501 gttttgatca agcgttcact caggagcaat atccctttgc gaccgaagta atggatgttg
    10561 ccgacgccgg gcaggtggcg caggtatgtc agcgactgtt agctgaaacg gagcgactgg
    10621 acgtgctgat caatgcggcg ggaattttgc gcatgggcgc gaccgatcag ctcagtaaag
    10681 aggactggca gcagactttt gcggttaacg tcggcggtgc gtttaacctg ttccagcaaa
    10741 ccatgaacca gtttcgccgt cagcggggcg gggcgattgt cactgtggcg tccgacgccg
    10801 cacacacgcc gcgtattggt atgagtgctt atggcgcatc gaaagcggcg ctgaaaagcc
    10861 tggcgttgag cgtcgggctg gaactggcgg gtagcggcgt gcgctgtaat gtggtttcgc
    10921 ctggctccac cgacaccgat atgcaacgca cgctgtgggt gagcgatgac gccgaagaac
    10981 agcgtattcg cggctttggc gagcagttta aactcggcat tccgctgggg aaaatcgccc
    11041 gtccacaaga gatcgccaac acgattttgt tcctcgcctc tgacctcgcc agccatatca
    11101 ccctacagga tattgtggtc gatggcggct caacgctggg ggcataagca tgatctggaa
    11161 acgccattta acgctcgacg aactgaacgc caccagcgat aacacaatgg tggcgcatct
    11221 gggaattgtg tatacccgtc tgggagatga tgtgctggaa gccgaaatgc cggttgatac
    11281 ccgtactcat cagccgtttg gcctgctgca tggcggcgcg tcggcggcgc tggctgaaac
    11341 gctgggatcg atggccggat ttatgatgac ccgtgacggg cagtgtgtgg tgggcacgga
    11401 acttaacgcc acccatcatc gcccggtgtc tgaaggcaag gtacgcggcg tctgccagcc
    11461 gctgcatctt gggcggcaaa atcagagctg ggaaatcgtc gttttcgatg aacaggggcg
    11521 gcgttgctgc acttgtcggc tgggtacggc agttttggga tgagcccgac agaattaaat
    11581 gagattgcag gaaaactcgg ttaacggagt gatcgagtta acattgttaa gttaaatatt
    11641 ggtttcaact ccgatttaca tagttaccgt gttgttaaat cgtacaaaga tgttatagaa
    11701 acaaaatgta acatctctat ggacacgcat acggataaca actatgaaca aatcagggaa
    11761 atacctcgtc tggacagtgc tctctgtaat gggagcattt gctctgggat acattgcttt
    11821 aaatcgtggg gaacagatca acgcgctgtg gattgtggtg gcgtcggtct gtatctatct
    11881 gatcgcttac cgtttttatg ggttgtatat cgccaaaaat gtgctggcgg ttgacccgaa
    11941 gcgtatgacg ccagcggtgc gccataacga cgggctggac tatgtgccga cggacaagaa
    12001 agtgctgttc ggtcaccatt ttgcggccat cgccggagca ggtccgttgg ttgggccggt
    12061 gctggcagcg caaatgggct acctgccggg gatgatctgg ctactcgccg gggtggttct
    12121 cgccggtgcg gtgcaggatt tcatggtgct gtttgtttct acgcgccgtg acggtcgatc
    12181 gctgggtgag ctggtcaaag aagagatggg gccaaccgcc ggggtgatag cgctggtggc
    12241 ctgctttatg atcatggtca ttatccttgc agtactggcg atgatcgtgg tgaaagccct
    12301 gactcatagc ccgtggggaa cgtataccgt tgcgttcacc attccgctgg cgctgtttat
    12361 ggggatctac ctgcgctatc tgcgtccggg gcgtattggt gaagtgtcgg tcatcggtct
    12421 ggtattcctg attttcgcca ttatctctgg cggcagggtg gcagaaagtc cgacctgggc
    12481 accgtacttt gactttaccg gcgtgcagct gacctggatg ctggtgggtt acggttttgt
    12541 ggcggcggtg ctgccggtgt ggttgctgct ggccccgcgt gactacctct ctaccttcct
    12601 gaaaatcggg acgatcgtcg gtctggcggt aggcattttg attatgcgcc cgacgctgac
    12661 catgcctgcg ctgaccaaat ttgtcgatgg cactggcccg gtatggaccg gtaacctgtt
    12721 cccgttcctg tttatcacca tcgcctgtgg tgcggtgtct ggcttccatg cgctgatctc
    12781 ttccggcacc acgccgaaga tgctggcgaa cgaagggcag gcttgtttta tcggctacgg
    12841 tggaatgtta atggaatcct tcgtggcgat tatggcgctg gtttccgcct gtatcatcga
    12901 tccgggcgtt tactttgcca tgaacagccc aatggcggtg ctggctccgg cagggacggc
    12961 ggatgtggtc gcttctgccg cgcaggtggt gagtagctgg ggctttagca ttacaccaga
    13021 tacgctcaac cagattgcca gcgaagtggg tgaacagtcg atcatttccc gtgcgggcgg
    13081 tgcgccgacg ttggcggtgg ggatggctta catcctgcac ggtgcgctgg gtggtatgat
    13141 ggatgtggcg ttctggtatc acttcgccat tctgtttgaa gctctgttta ttctgacggc
    13201 ggtagatgcg ggtacgcgtg ctgcgcgctt tatgttgcag gatctgctgg gcgtggtgtc
    13261 tcctggcctg aagcggaccg attcactgcc tgctaacctg ctggcaacgg cgctgtgcgt
    13321 actggcgtgg ggctacttcc tccatcaggg cgtggtcgat ccgctgggcg gtattaacac
    13381 tctgtggccg ctgtttggta ttgccaacca gatgctggca gggatggcgc tgatgctctg
    13441 tgccgtggtg ttgttcaaga tgaaacgtca acgttacgcc tgggtggcgc tggtaccaac
    13501 ggcctggctg ctgatttgta ccctgaccgc tggctggcag aaagcgttta gcccggatgc
    13561 gaaagtcggc ttcctagcca ttgctaacaa gttccaggca atgatcgaca gcggcaatat
    13621 tccgtcgcag tatactgagt cacagctggc gcaactggtg ttcaacaacc gtctggatgc
    13681 cgggttaacc atcttcttta tggtggtcgt ggtggttctg gcactgttct cgattaagac
    13741 ggcacttgcg gcattgaaag atccgaagcc aacggcgaaa gaaacgccgt atgagccgat
    13801 gccggaaaat gtcgaggaga tcgtagcgca ggcgaaaggc gcgcactaaa gtcagagtga
    13861 ggggggatgt tggcgaatgt tggcatagtg ccgagggttc cccctcaccc taaccctctc
    13921 cccgatgggg cgaggggact gaccgagtgc gttgatagca tttgtaggcc ggataaagcg
    13981 ttcacgccgc atccggcact ctttcagcaa catggttagc ggaggccaag atgtttgatt
    14041 cactggcaaa agccggaaaa tatttaggtc aggcggcgaa gctgatgatt ggtatgcctg
    14101 attacgacaa ctatgtcgaa catatgcggg ttaaccatcc cgatcaaacg ccgatgacct
    14161 acgaggagtt tttccgtgag cggcaggacg cgcgctacgg tggaaaaggc ggcgcgcgct
    14221 gctgctaaat ttgcacgtca ggctttaaac gattccactt tttcgaacgc tgcacgcaac
    14281 gtatctggtg tcagcgtgac tggcaggtaa tgaatggact ccaccgggcg caaggtgtgg
    14341 gcaatcactt tgtcgatctc cgcctgatta ttgatatcca cttccagctc cgccagcgta
    14401 gtcggcagat gaaaacgctg atacgccccg gttaattgcg ccagcacatc atcctgaccc
    14461 agcaaggcgc tttgcaccag aattccgtaa gcgactttgg tgccgtgaag aaacttctcg
    14521 gtttgcggca ggacagtcag accgttatgc acggcatgag ccgccgccac acgcgtaaaa
    14581 cgatcgccca gaccaccgac catcccacca ccagcaataa tagcatccac cacatcgcaa
    14641 aatgattgcg ttaactgctg attttgctga tcggcaagtg cctgttcgct actgtttaac
    14701 aagacgtcgt gaatggcctg cgcattattg atccccagcc gcacggttag cggcaacgtt
    14761 tctggttgcg gagccagcac caccgcttca taccatttcg ccagcgtgtc accgatcccc
    14821 gccagcagat attgttgcgg tgcattgagg ataatctccg gttccaccag caccataaaa
    14881 ttggcgtcgt cgaaaatctc ataatgcagc gcctgtccgg catcgttata ccagacggag
    14941 agcggtgtcc aggcggcgca ggtagcggcg atcgtcggaa cggcaacaaa tggcagaccg
    15001 agacggcggg cgagggcttt cgcggtgtcg agcagtgcgc cgccgccgac gccaatcacc
    15061 acgctgcgat cgtcaccgga ctcagccgcc agttgctgta catcgctttc gctgcaatga
    15121 ccacgaaaca aaatatgctt tgcccctgga agtccaaacg ctggcggaag tttggtttgc
    15181 gccgcagcaa tggcgcgttt gccgtagatc cacaccgcgc gagaaagttg ttcatcagtg
    15241 aaaaaatcgt tcaggtgatt gaaacttctt ggatgtgaaa agtagttagc cgggccgacg
    15301 accacgcgga taggattgtg aggcatgttg tgttgtcctt attgttttat ttagacatct
    15361 aaacgtcttg attgccaaat actagcatcg tgttatagtg ccttcaacac gcaacttcgt
    15421 caggtacaat aaaaatgaca aataaccctc tgattccaca aagcaaactt ccacaacttg
    15481 gcaccactat tttcacccag atgagcgcgc tggcgcagca acaccaggcg attaacctgt
    15541 cgcaaggctt tcctgatttt gatggtccgc gctatttaca ggagcggctg gcgtaccacg
    15601 ttgcccaggg ggcaaaccaa tacgcgccca tgaccggcgt gcaggccttg cgcgaggcga
    15661 ttgctcagaa aacggaacgt ttgtatggct atcaaccaga tgccgatagc gatatcaccg
    15721 taacggcagg ggcgacggaa gcgttatacg cggcgattac cgcactggtg cgcaatggcg
    15781 atgaagtgat ttgttttgat cccagctatg acagttacgc ccccgccatc gcgctttctg
    15841 ggggaatagt gaagcgtatg gcactgcaac caccttgact ggcaggaatt tgccgcatta
    15901 ttaagcgagc gcaccagact ggtgatcctc aacactccgc ataaccccag tgcaactgtc
    15961 tggcagcagg ctgatttcgc cgctttgtgg caggcgatcg ccgggcacga gatttttgtc
    16021 attagcgatg aagtctacga gcacatcaac ttttcacaac agggccatgc cagtgtgctg
    16081 gcgcatccgc agctgcgtga gcgggcagtg gcggtttctt catttggcaa gatctatcat
    16141 atgaccggct ggaaagtggg ttattgtgtt gcgccagcgc ccatcagcgc cgaaattcgc
    16201 aaggtacatc agtatctgac cttttcggtg aataccccgg cacagctggc gcttgctgat
    16261 atgctacgtg cagaacctga gcattatctt gcgttaccgg acttttatcg ccagaagcgc
    16321 gatattctgg tgaatgcttt aaatgaaagc cggctggaga ttttaccgtg tgaaggtaca
    16381 tactttttgc tggtggatta cagcgaggtt tctaccctgg atgatgttga gttttgccag
    16441 tggctgacgc gggagcacgg cgtggcggcg attccgctgt cggtgttttg cgccgatccc
    16501 ttcccacata aactgattcg tctctgtttt gccaagaagg aatcgacgtt gctggcagca
    16561 gctgaacgcc tgcgccagct ttagctattt aaccgtccag gcgcgggaat attgacggtc
    16621 ggcaaacaac tcttgcaggc cgttaatttg cttcaggcgc agcacttcgt cgctgtccat
    16681 tcccagctct ttgccaattt tattatcgtc ccatcccaac tggctaagtt cacggacgat
    16741 ttccgacatg gcggtgattt gatggcgtcc acgagcgcga ttatgacgaa tagtcgcggc
    16801 gatgcgttga ttacgcgtac cttccagaca ggtcaccggc aaataacctt ttaagcgtaa
    16861 ttttaatgat gatgag
//
LOCUS       DAJVUN010000080        16697 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.080, whole genome shotgun sequence.
ACCESSION   DAJVUN010000080 DAJVUN010000000
VERSION     DAJVUN010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16697
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.080"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(79..1440)
                     /gene="eutB"
                     /locus_tag="OQQ76_002246"
     CDS             complement(79..1440)
                     /gene="eutB"
                     /locus_tag="OQQ76_002246"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit alpha"
                     /protein_id="HCS1968732.1"
                     /translation="MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQER
                     VAAKQVLSEMTVADIRNNPVIAYEDDCVTRLIQDDVNETAYNQIKNWSISELREYVLS
                     DETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGAKKMPVIKKANTTIGIPGTFSAR
                     LQPNDTRDDVQSIAAQIYEGLSFGVGDAVIGVNPVTDDVENLSRVLDTIYGVIDKFNI
                     PTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFN
                     RIAGENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFIVNTVVGFIGPEY
                     LYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIM
                     GMPLGDDIMLNYQTTAFHDTATVRQLLNLRPSPEFERWLESMGIMANGRLTKRAGDPS
                     LFF"
     gene            complement(1452..2855)
                     /gene="eutA"
                     /locus_tag="OQQ76_002247"
     CDS             complement(1452..2855)
                     /gene="eutA"
                     /locus_tag="OQQ76_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase reactivating factor
                     EutA"
                     /protein_id="HCS1968733.1"
                     /translation="MNTRQLLSVGIDIGTTTTQVIFSHLELVNRAAVSQVPRYEFIKR
                     EISWQSPVFFTPVDKQGGLEEAELKSLILEQYQAAGIAPESVDSGAIIITGESAKTRN
                     ARPAVMALSQSLGDFVVASAGSHLESVIAGHGAGAQTLSEQRLCRVLNIDIGGGTANY
                     ALFDAGKISGTACLNVGGRLLETDSQGRVVYAHKPGQMIVDECFGAGTDVRSLTGAQL
                     VQVTRRMAELIVEVIDGTLSPLAQALMQTGLLPAGVTPEIITLSGGVGECYRHQPADP
                     FCFADIGPLLATALHDHPRLREMNVQFPAQTVRATVIGAGAHTLSLSGSTIWLEGVQL
                     PLRNLPVAIPIDETDLVSAWQQALLQLDLDPKTDAYVLALPASLPVRYAAVLTVINAL
                     VDFVARFPNPHPLLVVAGQDFGKALGMLLRPQLQQLPLAVIDEVIVRAGDYIDIGTPL
                     FGGSVVPVTVKSLAFPS"
     gene            complement(2852..4078)
                     /gene="eutH"
                     /locus_tag="OQQ76_002248"
     CDS             complement(2852..4078)
                     /gene="eutH"
                     /locus_tag="OQQ76_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutH"
                     /protein_id="HCS1968734.1"
                     /translation="MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEGS
                     GGQFEEGFMAMGALGLAMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACD
                     MGGFFLAKELAGGDVAAWLYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLA
                     GIVTIPIGCIVGGLVAMYSGVQINGQPVEFTFALILMNMIPVIIVAILVALGLKFIPE
                     KMINGFQIFAKFLVALITLGLAAAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEV
                     IGSISCVLLGAYPMVLLLTRWFEKTLMSVGKVLNMNNIAAAGMVATLANNIPMFGMMK
                     QMDTRGKVINCAFAVSAAFALGDHLGFAAANMNAMIFPMIVGKLIGGVTAIGVVMMLV
                     PKDDATAAKTEAEAQS"
     gene            complement(4295..5482)
                     /gene="eutG"
                     /locus_tag="OQQ76_002249"
     CDS             complement(4295..5482)
                     /gene="eutG"
                     /locus_tag="OQQ76_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311342.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization ethanol dehydrogenase
                     EutG"
                     /protein_id="HCS1968735.1"
                     /translation="MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQA
                     QTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL
                     RESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGT
                     GSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEDVPSHVTAMTGIDALTHAI
                     EAYSALNAIPLTDSLAIGAIAMIGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAG
                     LGLCHAMAHQPGAALHIPHGLANAMLLPTVMEFNRMVCRERFSQIGRALRTKKSDDRD
                     AINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAALEDICLRSNPRTASLEQIVGLYA
                     AAQ"
     gene            complement(5472..6308)
                     /gene="eutJ"
                     /locus_tag="OQQ76_002250"
     CDS             complement(5472..6308)
                     /gene="eutJ"
                     /locus_tag="OQQ76_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
                     /protein_id="HCS1968736.1"
                     /translation="MAHDEQWLTPRLQTAATLCNQTPAATESPLWLGVDLGTCDVVSM
                     VVDRDGQPVAVCLDWADVVRDGIVWDFFGAVTIVRRHLDTLEQQFGRRFSHAATSFPP
                     GTDPRISINVLESAGLEVSHVLDEPTAVADLLQLDNAGVVDIGGGTTGIAIVKKGKVT
                     YSADEATGGHHISLTLAGNRRISLEEAEQYKRGHGEEIWPTVKPVYEKMADIVARHIE
                     GQGITDLWLAGGSCMQPGVAELFRKQFPALQVHLPQHSLFMTPLAIASSGREKAEGLY
                     AK"
     gene            complement(6319..7722)
                     /locus_tag="OQQ76_002251"
     CDS             complement(6319..7722)
                     /locus_tag="OQQ76_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HCS1968737.1"
                     /translation="MNQQDIEQVVKAVLLKMQSSDTPPAAVHEMGVFASLDDAVAAAK
                     VAQQGLKSVAMRQLAIAAIREAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTP
                     GVECLSPQVLTGDNGLTLIENAPWGMVASVTPSTNPAATVINNAISLIAAGNSVIFAP
                     HPAAKKVSQRAITLLNQAIVAAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGE
                     AVVEAARKHTNKRLIAAGAGNPPVVVDETADLARAAQSIVKGASFDNNIICADEKVLI
                     VVDSVADELMRLMEGQHAVKLTAEQAQQLQPVLLKNIDERGKGTVSRDWVGRDAAKIA
                     AAIGLNVPQETRLLFVETTAEHPFAVTELMMPVLPVVRVANVADAIALAVKLEGGCHH
                     TAAMHSRNIENMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR
                     TFVRLRRCVLVDAFRIV"
     gene            complement(7734..8021)
                     /gene="eutN"
                     /locus_tag="OQQ76_002252"
     CDS             complement(7734..8021)
                     /gene="eutN"
                     /locus_tag="OQQ76_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutN"
                     /protein_id="HCS1968738.1"
                     /translation="MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAI
                     DNIGAGTGEWVLLVSGSSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK"
     gene            complement(8128..8421)
                     /gene="eutM"
                     /locus_tag="OQQ76_002253"
     CDS             complement(8128..8421)
                     /gene="eutM"
                     /locus_tag="OQQ76_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
                     /protein_id="HCS1968739.1"
                     /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM
                     VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL"
     gene            complement(8460..9476)
                     /gene="pta"
                     /locus_tag="OQQ76_002254"
     CDS             complement(8460..9476)
                     /gene="pta"
                     /locus_tag="OQQ76_002254"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HCS1968740.1"
                     /translation="MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPIL
                     VANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTD
                     PLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSFIFLMLPQYSGP
                     ALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANV
                     QQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIG
                     YNIAQRLGGYRAVGPLIQGLAVPMHDLSRGCSVQDIIELALVAAVPRQTEVNRESSLQ
                     TLVE"
     gene            complement(9466..10275)
                     /gene="eutT"
                     /locus_tag="OQQ76_002255"
     CDS             complement(9466..10275)
                     /gene="eutT"
                     /locus_tag="OQQ76_002255"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001425897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization cob(I)yrinic acid
                     a,c-diamide adenosyltransferase EutT"
                     /protein_id="HCS1968741.1"
                     /translation="MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLR
                     IKFIDEQGRLFVDDEQQQPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKM
                     VAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGC
                     QAIVGLSDEDLHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVF
                     ITRSFEVLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQIQQRLGERNDY"
     gene            complement(10272..10973)
                     /gene="eutQ"
                     /locus_tag="OQQ76_002256"
     CDS             complement(10272..10973)
                     /gene="eutQ"
                     /locus_tag="OQQ76_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutQ"
                     /protein_id="HCS1968742.1"
                     /translation="MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFT
                     ITECDESIPVTASVPASVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQ
                     SLEQGAMQPSFKSVTGKGGIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAG
                     FMQWENAFFPWTLNYDEIDMVLEEELHVRHEGQTMIAKAGDVMFIPKGSSIEFGMTSS
                     VKFLYVAWPANWQSL"
     gene            complement(10948..11427)
                     /gene="eutP"
                     /locus_tag="OQQ76_002257"
     CDS             complement(10948..11427)
                     /gene="eutP"
                     /locus_tag="OQQ76_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutP"
                     /protein_id="HCS1968743.1"
                     /translation="MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDT
                     PGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD
                     MPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE"
     gene            complement(11440..11775)
                     /gene="eutS"
                     /locus_tag="OQQ76_002258"
     CDS             complement(11440..11775)
                     /gene="eutS"
                     /locus_tag="OQQ76_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HCS1968744.1"
                     /translation="MDKERIIQEFVPGKQVTQAHLIAHPGEELAKKIGVPDAGAIGIM
                     TLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYCSVGAVEEALSQTVSGLGRLLN
                     YTLCEMTKS"
     gene            complement(12068..14347)
                     /gene="maeB"
                     /locus_tag="OQQ76_002259"
     CDS             complement(12068..14347)
                     /gene="maeB"
                     /locus_tag="OQQ76_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxaloacetate-decarboxylating
                     malate dehydrogenase"
                     /protein_id="HCS1968745.1"
                     /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA
                     APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA
                     GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH
                     DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV
                     CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK
                     MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV
                     GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI
                     APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG
                     EEARVLHATQELVTQGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK
                     EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV
                     VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG
                     IEPRVALLSHSNFGSSDCPSSSKMRQALELVRDRAPDLMIDGEMHGDAALVEAIRNDR
                     MPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV
                     RRIVNMVALAVVEAQTQPL"
     gene            14636..15586
                     /gene="tal"
                     /locus_tag="OQQ76_002260"
     CDS             14636..15586
                     /gene="tal"
                     /locus_tag="OQQ76_002260"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HCS1968746.1"
                     /translation="MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL
                     SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSF
                     DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGISAAEELEKEGINCNLTLLFSF
                     AQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYE
                     TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS
                     EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL"
     gene            15606..>16697
                     /locus_tag="OQQ76_002261"
     CDS             15606..>16697
                     /locus_tag="OQQ76_002261"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416960.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HCS1968747.1"
                     /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL
                     KHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI
                     GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
                     ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH
                     DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL
                     GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGGLPK
                     DWEKTTQKYINELQANPAKIATRKASQNTL"
BASE COUNT         3744 a         4847 c         4365 g         3741 t
ORIGIN      
        1 tttgtcccat tgacgccatc acgctgcgta caatttcttc aatctgtttt tgatccatga
       61 tgtgttatct ccgcgtcatc agaagaacag tgacggatcg cccgcccgtt tggtcaggcg
      121 accgtttgcc ataatgccca tgctttccag ccagcgttca aactctggtg acgggcgcag
      181 gttgagtaac tgacgcacag tggcggtatc gtggaatgcg gtggtctggt agttgagcat
      241 gatgtcatca cccagcggca tccccatgat gtagttgcag cctgcggtgg cgagcaggat
      301 catcaggttt tcgttgaggt tctggtcagc gtcagcgtgg ttggtgtagc agcagtcaca
      361 gcccatagag atgccgctca gcttgcccat aaagtgatct tctaagccag cacggataat
      421 ctggcggtcg ttgtagagat actccggccc aataaagccg accacggtgt tgacgataaa
      481 cggatcgtaa tgacgcgcca gcccatagtt acgtgcttcc atcgtcacct ggtcagcgcc
      541 gaagttagcg ccagcggata gcgcagagcc ttgtccggtt tcgaaataga ggcagttttc
      601 cccggcgata cggttgaact ctgcacccac tgcgcgcgct tcgtcgagca tcgccagttc
      661 cacgccaaac tctttcagcc ctttttcgct gccacagata ctctggaaaa tcagtccgcc
      721 aggcgcgccg cgacgaatcg cttcgatctg ggtggtgacg tgcgccagta cgcagccctg
      781 agttgggatg ttgaatttgt cgatcacgcc ataaatggta tccagcacgc ggcttaagtt
      841 ttccacgtcg tcagttaccg ggttgacgcc gatcaccgca tcgcccaccc cgaaggaaag
      901 cccttcgtag atttgcgcgg cgatactttg cacgtcgtca cgagtgtcat ttggctgcaa
      961 acgggcgctg aaggtgcccg gaataccgat ggtggtattg gcctttttga ttaccggcat
     1021 tttcttcgcg ccgtagatca ggtccgcgtt ggagcaaatc ttcgctaccg ccgcgaccac
     1081 ttccgaggtc agccctttgc gggtaaaggc aatgtcgtcc acgctagttt catcgctcag
     1141 cacatactca cgcagttcgc tgatgctcca gtttttaatc tggttgtagg ccgtttcgtt
     1201 aacatcgtcc tgaatcagcc gcgtcacgca gtcatcttca taggcaatca ccggattatt
     1261 gcggatgtcc gctacggtca tttccgacaa cacctgcttt gccgccacgc gctcctgtga
     1321 acttgccgct gcaacgcctg ccagcacatc ccccgaacgc agttcgttgg ctttagccag
     1381 cacctctttt acatccttaa actgatatac attgccgaac aatgtggtct ttagtttcat
     1441 aagtcgttcc ctcaggaagg aaatgcgagt gatttcaccg tcaccggcac aaccgatccg
     1501 ccaaaaagag gcgtaccaat gtcgatatag tcccccgcgc ggacaatcac ttcgtcaatg
     1561 actgccaacg ggagttgttg tagctgtggg cgcaacaaca tgcccagagc tttaccaaag
     1621 tcctgcccgg ccaccaccag caggggatgc ggattcggaa aacgcgcgac gaaatcgacc
     1681 agcgcgttga tgaccgtcag taccgcggcg taacgcacag gcagcgaggc gggaagcgcc
     1741 agcacgtacg cgtcagtttt gggatcaaga tccagctgaa gcagcgcctg ttgccaggca
     1801 ctcaccagat ccgtttcatc aattgggatc gccaccggca aattgcgcag cggcagttgt
     1861 acgccctcca gccagattgt gctgccagag agcgaaaggg tatgtgcgcc cgcgccaatc
     1921 accgtggcgc gtacggtttg cgccggaaac tgcacattca tctcacgcag gcgcggatgg
     1981 tcatgcagcg ccgttgccag cagcgggcca atatcggcaa aacagaacgg atcggcgggc
     2041 tggtggcgat aacattcgcc cacgccgcca gaaagcgtaa tgatttcggg cgtaacacct
     2101 gcgggcagca aaccggtttg cattaatgcc tgcgcgagcg gcgaaagcgt tccgtcaatc
     2161 acttcgacaa tcagttctgc catccgccgg gtaacctgca ccagctgcgc gccggtcagc
     2221 gaacggacgt cagtgcctgc accgaagcac tcatccacaa tcatctgccc cggtttatga
     2281 gcgtaaacca cgcgcccctg gctgtcggtt tccagcaggc gaccaccgac gttgaggcag
     2341 gcagtgccgc tgatttttcc ggcatcgaac agggcgtagt tcgcggtgcc accgccgatg
     2401 tcgatattca gtacccgaca cagccgttgt tcagaaaggg tttgcgcccc ggcaccgtga
     2461 ccggcgatca cggattcgag gtgcgacccg gcgctggcga cgacaaaatc gcccagcgac
     2521 tgagagagcg ccatcaccgc cgggcgagca ttgcgggttt tcgcgctttc accggtgatg
     2581 atgatggcac cagaatcaac gctttccggc gcaatgcccg cagcctgata ttgctctaaa
     2641 atcagcgact tcagttccgc ttcttctaaa ccaccctgtt tatcgacagg ggtaaagaac
     2701 accgggcttt gccagctaat ttcgcgtttg atgaattcgt agcgcggcac ctgcgacacc
     2761 gccgcacggt taaccagttc caggtgggag aaaatcacct gggtggtggt ggtgccgata
     2821 tcgataccga cgctcagtag ctggcgagtg ttcacgattg tgcctccgct tcggttttag
     2881 ctgcggtcgc gtcatctttt ggcaccagca tcatcaccac gccaatcgcc gttacgccgc
     2941 cgatcaactt gccgacaatc atcgggaaga tcatggcatt catgttggca gcggcgaacc
     3001 ctaagtggtc gcccagggcg aaagcagcag aaacggcgaa ggcgcagttg atgactttgc
     3061 cgcgggtatc catctgcttc atcatgccga acatcgggat gttgttggca agcgttgcca
     3121 ccatgccggc tgccgcgatg ttgttcatat tcagcacttt accgacgctc atcagcgttt
     3181 tttcaaacca gcgagtcagc agcagcacca tcggatacgc ccctaacaga acgcaggaga
     3241 tagaaccgat aacttcaatg gcgcgcatca cctcaccggg tttatcgcca ggggccataa
     3301 agataggatc cagaccgggg atcagttccc agccaagcag gaatttcact accgcagcgg
     3361 caagaccgag ggtgatcaat gcaacgagga atttggcgaa gatctggaag ccgttgatca
     3421 ttttttccgg gatgaatttc agccccagcg ccaccagaat cgcaacaatg atcaccggga
     3481 tcatgttcat caggatcagg gcgaaagtga attccaccgg ctgaccgttg atctgcacac
     3541 cggagtacat agcaaccaga ccaccaacaa tacagccaat cggaatggtc acaatgcccg
     3601 ccagcacgcc gagcgccaga taacgacggt cagaaggttc gataatgccg agcgccaccg
     3661 gaatggaaaa cacaatcgtt ggccccatca tcgacccaag aattaaccca gagtatagcc
     3721 acgctgctac gtcgccgccc gccagctctt tggcgaggaa gaagccgccc atatcgcacg
     3781 ccagcagcgt tccggcgaac attgacgggt ttgcgccgag catttcgtaa accgggataa
     3841 ttaccggccc gagtacgtga gccagtaccg gtgccagcgc ggtcataccg accatcgcca
     3901 gacccagagc gcccattgcc ataaagcctt cttcgaactg accgcctgat ccttcgatac
     3961 ttttaccgaa cttaccgagg aaacgagcag aaccgccgaa ctgcgacagg atcctgtcta
     4021 cggcagctat cagcataaag aacatcatga tgtacatgat gatttcgtta attcccatcg
     4081 cctttactcc ctgttagttg ttatttattg gcggatgcgg cgtaaacgcc ttatccgccc
     4141 tacatgtgca atcccgaagg ccggatcaga cgcggcaagc gtcgcatccg gcaattgcac
     4201 cgcgccactg gcggatgcgg cgtgaacgcc ttatccgccc tacatgtgca atcccgtagg
     4261 ctggataaga cgcggcaagc gtcgcatccg gcatttattg cgccgctgcg tacaggccga
     4321 caatctgctc caggctggcg gtacgcgggt tactgcgcag acaaatatct tccagcgcgg
     4381 cctgcgccca tgcgccgtaa tgcgcagatg tcgcaccaac atcgcccagt cgtttaccaa
     4441 tcccaacttc cgcaatcagc tcacttaccg cgttaatagc gtcacgatcg tcggattttt
     4501 tagttcgcag tgcccgacca atctgactaa agcgttcacg acaaaccatc cggttaaatt
     4561 ccatcaccgt tggcagcaac atggcgttcg ccagaccgtg tggaatatgc agcgccgcgc
     4621 ccggctgatg cgccatcgcg tggcacaacc caagacccgc actggaaaac gccattcccg
     4681 ccatacatga agccagcaac atgctctcgc gcgcggcaag gtcgtgaccg tagcccaccg
     4741 ctttcggcag cgatttgcca atcatcgcaa tagcgccaat cgccaggctg tcggtaagcg
     4801 gtatagcgtt cagggcgctg tatgcttcaa tggcatgggt taacgcatca atgccggtca
     4861 tcgccgtgac atgcgacggc acatcttcgg tcaatgcggc gtcgaggatc gccacatccg
     4921 gcatcagcga ggcatgggct aacacctgct tgcgcccgct caccgcgtcg ataatcaccg
     4981 ttacattggt ggtttcagag ccggttccgg cggtcgttgg aatggcaatc agcggcaagc
     5041 gcggttgcag aacgctggtt tctgacatct ctgccagcgt gctatccggg ttcgtcacca
     5101 gcaacgccac ggctttcgcc gcatccagca ccgagccgcc gccaaatgcg atcaccccat
     5161 cacagcctga ctcacgcaac tgcgccacgg ctgcacacac gtcggtgatg cacggttcgc
     5221 ccaccggaca tggccagagc gtcatggcga tgcctttaac agccaggctg cgcgtcagcc
     5281 cggcggtcat ccctgcctga tgcaaaaagc tgtctgccat cacgaacaga tgtttcagcc
     5341 cacgcgtttg cgcttgctgt ccgcaactgc tcaccgagcc cggaccgcaa agcgtcaccg
     5401 gtggaacgct aaatgttttt acccgttgca gattcagggt atcgaacgcc tgaaagagcg
     5461 cggtctgcaa ttcattttgc atatagcccc tccgctttct ctcgcccact actggcgatc
     5521 gccagcgggg tcataaacaa actgtgctgc ggtaaatgca cctgtaacgc cgggaattgt
     5581 ttgcgaaaca gttccgccac gcccggttgc atacaagagc cgcccgccag ccataaatca
     5641 gtaatgccct gcccttcaat atgccgggcg acaatgtccg ccattttttc gtacaccggt
     5701 ttcaccgtag gccaaatctc ttcaccgtga ccgcgcttgt actgctccgc ctcttccagc
     5761 gaaatacggc gatttccggc gagagtcaga gagatgtgat gtccgccggt tgcttcatcc
     5821 gccgagtacg tcaccttgcc ctttttcacg atggcaatgc cggtagtgcc gccgccgata
     5881 tccactacac cggcgttgtc cagttgcagc agatccgcaa ctgcggttgg ctcatccagc
     5941 acatggctca cttccagtcc agcagactcc agcacgttga tggaaatacg cgggtccgta
     6001 cctggaggaa atgaagtcgc cgcatggcta aaacggcgac cgaattgctg ctcgagcgtg
     6061 tcgagatggc gacgaacaat ggtgacagcg ccgaagaaat cccagacgat gccgtcgcgg
     6121 accacatcgg cccagtcgag gcataccgcc accggctgac cgtcgcggtc gacaaccatc
     6181 gacaccacat cgcaggtgcc cagatccacc cccagccaca gcggagattc cgtcgcggcg
     6241 ggcgtctggt tacacagcgt tgccgccgtt tgcagacgtg gggtgagcca ttgttcgtcg
     6301 tgcgccatct gttactcctt aaacaatgcg aaacgcatcg actaatacac agcgacgcag
     6361 acggacaaac gtacgcgcgc tggttacccc ttcaccggtt ggcgtggtga tggtcatggt
     6421 ggtccagcct tccccgccca gccccagccc ggcaatgcac ggtccgttct taacgaaaat
     6481 gctggtatca atagcattcg ccatctggtt catgttttcg atgttgcgcg agtgcattgc
     6541 cgccgtgtgg tggcaaccgc cttccagttt caccgccagc gcaatggcat ccgccacgtt
     6601 ggcgacgcgc acgacgggca gcaccggcat catcagttcg gtcacggcaa acggatgttc
     6661 tgcagtggtt tccacaaaca gcaaacgcgt ttcttgcggc acgttcaggc cgattgccgc
     6721 cgcgattttc gccgcatcgc gaccaaccca gtcacggctg acggtgcctt ttccgcgctc
     6781 gtcgatattt ttcagcaaca ccggttgcag ctgctgcgcc tgttctgcgg tcagtttcac
     6841 cgcgtgctgg ccttccatca gacgcatcag ttcatcggct acgctatcaa caacaatcag
     6901 taccttttcg tcggcacaaa tgatgttgtt atcgaaagaa gcgcctttga cgatggactg
     6961 agcggcacgg gcgaggtcgg cggtttcatc caccactacc ggcgggttgc cagcgcctgc
     7021 ggcaatcaga cgtttattgg tgtgtttacg cgccgcttct actaccgctt cgccgccggt
     7081 caccaccaga aggccgatgc ccggaaactt gaacaaacgc tgcgcggttt cgatatccgg
     7141 atttgccaca gtaaccagta agttttccgg cccgcctgcg gcaacaatcg cctggttgag
     7201 cagcgtgatc gcccgctggg agactttttt cgccgccgga tgcggggcaa aaatgacgct
     7261 gttgcccgcg gcaatcaggc tgatggcgtt attaattacg gttgccgccg ggttagtgga
     7321 cggagttacc gaagccacca tgccccaggg cgcgttttca attaaagtca ggccgttgtc
     7381 gccggtcagc acctgcggag agagacactc aacgcctggc gtgccgcgcg cctgagcgac
     7441 gtttttggca aatttatctt caacgcggcc catgccggtt tcactgacgg caagttccgc
     7501 taaatctctg gcgtgttttt cgcctgcctc acgaatggca gcaatggcta actggcgcat
     7561 tgccacgctt tttaaccctt gctgggcgac tttggctgcc gcaacggcgt catccaggga
     7621 cgcgaaaacg cccatctcat gaacggcggc gggcggcgtg tcactgcttt gcattttcag
     7681 cagtaccgct ttcaccacct gttcaatatc ctgttgattc atgatgttct gccttatttg
     7741 tggaaaatta cctgaccgcc agacaccacc tcatcgacaa tgccaatcac gcacagatcg
     7801 accggtgacg tttcgctttt atgcgcctgg cgggcggaac tgccactcac cagtaacacc
     7861 cactccccgg ttcccgcacc aatattgtcg atggcgacgg cgcattgccc gtcaggatta
     7921 ccttgtggat caatcatttc caccatcagc aatttgtcat gcgccagtcc gtgatggcgt
     7981 acggtacaaa caatttgtcc agtgacgact gccagtttca tacccgcctc cgtggcgtat
     8041 ttcaggtaaa agctccccct accctccgca gaaggtaaaa tgaaaaagga gagagcgtga
     8101 cgcccgaatc gacgtcacac agggtgatta caggttgctg ctatcgcctt tcaggccgat
     8161 cgggaagact tcttccaggt cgccgtgcgg acgcgggata acgtgtacag ataccagctc
     8221 gccgatacgc tgtgccgctg cggcacctgc atcggtcgcg gctttacagg ctgcaacatc
     8281 accacgaacc atggcagtac acaggccgcc gccaatctgc ttaacaccaa ccagcttgac
     8341 gcgcgcagct ttcaccatcg cgtcagaagc ctcaatcagt gcaaccaggc cccgggtttc
     8401 gatcattcct aatgcttcca ttgtgctttc ctctttatca gggtccagaa cgggaccgtt
     8461 cattcaacca gtgtttgtaa actgctttcg cggttcactt ctgtctgacg cggcacagct
     8521 gccaccagcg ccagctcgat aatgtcctgc acgctacaac cacgagagag atcgtgcatc
     8581 ggcacggcaa gtccttgtat cagtggcccg acggcacgat atccgccgag tcgttgtgcg
     8641 atgttgtaac caatatttcc ggcttccagc gacggaaaaa ccatcacatt ggccttgccc
     8701 tgtagcgggc tggcaggcgc tttttgcgcc gccacttccg gcacgaaggc ggcgtcaaac
     8761 tgtaactcgc catccaccac cagctttggt gcgcgctcac ggacgatttc tgtcgcctgc
     8821 tggacgttag caacacaggg gtgacgggcg ctaccattgc tggaaaacga cagcatcgcc
     8881 acgcgcggct cttctccggt gatggcgcgc caggtttcgg cactggcaag cgcgatatcc
     8941 gccagctgcg ccgccgtcgg ctgtggcacc acgctgcaat cggcaaagcc caacgccggg
     9001 ccgctgtact gtggcaacat caggaaaatg aaagagagcg ttttacagcc tggctgcaag
     9061 ccgataatgc gtaatccggc acgcagcaca tttgccgtgg aagagaggtt gcccgcgata
     9121 cagacatccg ctttaccggc gctgaccatt gctgcggcga acatcagagg gtcggtaagt
     9181 ttttccagcg catccggcgg cgttttttcg cccgcgcggg ccagccagcg atgagcaaat
     9241 tcttcccgca ttgcgaggtt gccatgcgga tcaatcacct gtagcccgtc catcgccacg
     9301 ccgtgactga gcgcaaactg acgaagttca aacggattgg cgaccagaat gggcgttgcc
     9361 agaccttgtt gatgtaaata ttgcgcggct ttcagcacac gttggtctaa cgcatccgga
     9421 aaaaccactc tggcgggcgc tcgcaacgcc agttcacgac aacgttcaat aatcattgcg
     9481 ttcccccagt cgttgttgga tctgcttcac cgttagcggc tgcttcgtta cgctcaggat
     9541 catcatcacg tagaccgtgc tggaaaggcg gttcagcgcc tgcaaaatgt ccgggcgtaa
     9601 tacttcaaag ctgcgggtga taaagacctg cgccgctacg gtttcggttt cccgcacttt
     9661 ggtgcgtagc agattgagca acgcagcatc gcgcccgtgg ctggcttccg gcaccagatg
     9721 atcgtggtcg agatagcgca gcggctgatg agaaagccga tgcagatctt cgtcagaaag
     9781 cccgacaatc gcctggcagc ccagcggttc ccccagcgca tcggcgcgca taatgttgcc
     9841 aagacgcgaa cggatatccg ccagccacgg ctgccacggt tccgccagtt caatttgcag
     9901 ccacactgcc agcgcaatgg tgctgtcgag aaccgcgcga aaacccagac gcggatcgct
     9961 tttggcgacc attttttccg ccgacaggtg agtcagcgta tccggctttt ttgccaccgg
    10021 ctggcggcac agttcgcagc acgcctgcgg atgttcatcg ctactggtca gcccatgaac
    10081 gggctgcggc tgctgctgtt catcgtcaac aaacaggcgg ccctgctcgt caataaactt
    10141 gatgcgcaga tggcggcttt ccagcaactc ccgggcagag ggcgtcaggc gactgtccgc
    10201 agggagatgg atctctgcgc cttcgctgag cgtatggttc gctcttagcc atgcttcggt
    10261 gatgaaatct ttcataggga ttgccagtta gccggccagg cgacatacag gaatttcacg
    10321 ctggatgtca taccaaattc gatgctggag cctttcggga taaacatcac gtcgcctgct
    10381 ttggcgatca tggtttggcc ttcgtggcga acatgcagct cctcttccag caccatgtcg
    10441 atttcgtcgt agttcagggt ccacgggaag aatgcgttct cccactgcat aaaaccggcg
    10501 gccatgctgc tgccgtcgtc tccggtcaca agatcagtca agcccacgca atgcggctct
    10561 gcgccgtcga aacgaccaaa cttgacgctg ctgccatcaa tcactttgat gccgcctttg
    10621 ccggtcaccg atttgaagct cggctgcatt gcgccctgct ccagcgactg tttttccttc
    10681 atcacttttt ccatcagctg tgcgaccagg ctttcggtaa actggccttc cggcagctgg
    10741 gcaatgatgg tttcgcggat gcgctggctt tcggttttgt cggctggcac gctggcgggc
    10801 acggacgccg ttaccgggat cgattcatca cattcggtga tggtaaaacc cagtagatcc
    10861 gccacttcac gggcttccgg ggtaataatg ctggcgcgca gaaccacgga cattgcctgt
    10921 tcgccgcgcg cgtgtgcttc acgaatatca ttcgctgtga tgagtttttt cacctgcttc
    10981 ctcctgtttg gtgagagatg ccagataatc caccagttgc tgcacgcttt gcgggtcgtg
    11041 gctgtttagc tcgaaaatcg gctcttcgaa acccgtctca agcaataact ttcgcgttgc
    11101 ggcgacgtca gcatctggca tgtccgtttt actgatgacg gcgatttgcc gtttgctgac
    11161 gccaatatcc agcaacccgg caggcaaccg actttccggg tcatttgcgc catggacata
    11221 gatcagcatg tctacatcct gtagcgtggt aattaaggcg tgataccagc ggggatggct
    11281 aaaatattca cccggcgtat caatatcgcc cttatcatta aattccacgg cctgtgtttt
    11341 tctggcgagg gtataattcc cctgcaacgc attaaataac gttgtttttc ctgccccgac
    11401 gctacccaca aacgcaattc gtttcatgaa tgcctcgtat taacttttgg tcatttcaca
    11461 aagcgtataa tttaataagc gacctaaacc gctgacggtt tgtgataacg cttcttctac
    11521 tgcgcccacc gagcaataaa tcaccaatgc accgctgaag cggtcgagaa aaccgatatg
    11581 cacatcagcg gctttcagcg ctaaatcacc ggcgatcatc gccgtttcgc cgggagttag
    11641 cgtcataatg ccaattgcgc ccgcatccgg aacgccgatt ttcttcgcca gttcctcacc
    11701 gggatgcgcg atgagatgcg cctgtgtgac ctgtttgccg ggcacaaatt cctgaatgat
    11761 gcgttcttta tccatgagtc gccgcctgtg aaaaactttc gtgtatcgtg acaatttttc
    11821 gtcagagtaa ataacaaaat tcggcaagcg cgtttaaaag gtgaggtaga tcactaagaa
    11881 tggagagata ttcgctgtgg tgcataaact ttcatatgca acgcatgaat ataaataaaa
    11941 taatatcgcg atattatata gactgctttt tttattattc gcaaactcag taataagctt
    12001 tactaatata ttgcagccaa accgcttacc ctgaatattc agggtaagcg tgagagttaa
    12061 aaaagaatta cagcggttgg gtttgcgctt caaccacggc cagcgccacc atgttgacga
    12121 tacgacgcac cgatgcgatc ggcgttaaca cgtgaaccgg tttcgccacg cccatcagca
    12181 ccggaccgac agtcacacct tccgagctgg aaacgcgcag taagttgtaa ctaatgcggg
    12241 cagcttccat gttcggcatc accagaatat tggcagaacc tttcaaaggg ctgtccggca
    12301 tacggtcgtt gcgaatcgct tccaccagcg ctgcatcgcc gtgcatttca ccatcaatca
    12361 tcagatctgg cgcacgatcc ctgaccagtt ccagcgcctg acgcattttg ctcgacgacg
    12421 ggcagtcaga agaaccaaag ttggagtgcg acaacagagc aacgcgcggc tcaataccaa
    12481 aacgacggac agtttctgcc gccatcaagg tgatctccgc cagctcttct gcgtctggtt
    12541 cgtcattgac gtaggtatcg gcaataaagg tgttaccact cggcagcagc aacgcgttca
    12601 ttgcacctgc ggtgtgaacg ccatcgcgat aaccaaagac atttttcacc acgctaaaat
    12661 gttcatgata atcgcccacc gtaccgcaga tcattgcatc ggcttcccca cgctgaacca
    12721 tgatcgcgcc gatcactgtc gggttactga tcagcgcccg ctgcgcctgt tcctgagtga
    12781 caccgcgacg cttcatgatc tggaagtatt cggtccagta ctctttaaag cgcggatcgg
    12841 attcgttatt gacgatctca aaatcaacgc ccgctttgat ctgcaagccc agtttctgaa
    12901 tgcgcatttc gatcacgttc ggacgaccga taaggatcgg tttcgccagt ccctgcgtta
    12961 ccagttcctg agtggcatgc agaacgcgcg cctcttcccc ttctggcaga acaacgcgct
    13021 tcggcgcttt gcgagcctgg gagaaaatcg gcttcataaa caggttggtt ttgtaaacga
    13081 actcagtcag cttgtcgatg tagacgtcga aatcagcaat cggacgcgtc gccacgcccg
    13141 actccatcgc ggctttagcg accgcaggag cgatcttaac gatcaagcgc ggatcaaacg
    13201 gttttggaat gatgtattcc ggaccaaagc tcagatcctg atcgccatac gctgaagcca
    13261 ccacttcgct ctgttccgca tgggcgagtt ctgcaatcgc acgtaccgct gccagtttca
    13321 tctcttcgtt gatggcggtt gcgccaacgt ccagcgcgcc acggaagatg aacgggaagc
    13381 acaggacgtt gttcacctgg ttcggatagt cagaacgacc ggtgcaaatg atggcatccg
    13441 gacgcacttc tttcgccagc ggcggcagaa tttccggttc cgggttcgcc agcgccagga
    13501 tcattggcgc acgagccatt ttcttcacca tttcctgggt cagcactttc gggccggaac
    13561 atccgaggaa aatatccgcg ccttcaatca catcatcgag ggtacgtttg ccgtcatcca
    13621 ccaccgcata tgcggctttg gtttccgcca tgtttggctc acggccctga tagataacgc
    13681 cttttgaatc gcaaaccacg atgttatgtt tttgcagacc cagcgctacc agcaggttca
    13741 tacaggcgat tgctgcggca cccgcgccgg aaaccaccat ccgcacgtcg gagatgtttt
    13801 tctccaccac gcgcaagccg ttgaggatgg cggcagtgct gatgattgcc gtgccgtgct
    13861 gatcgtcgtg gaataccgga atattcatcc gctcgcgcag tttctgttca atatagaaac
    13921 attctggcgc tttaatgtct tcgaggttga ttccgccgaa ggtcggttcg agcgcagcga
    13981 caacttcaat aaatttgtcc gggtcgagtt catcaacttc aatgtcaaat acatcaatcc
    14041 cggcgaattt cttaaacaga acgcccttgc cttccatcac cggtttgcca gccagcgcgc
    14101 caatgttgcc taaccccagc accgccgtac cgttagagat caccgccacc aggttaccgc
    14161 gcgcggtata tttgtaggct tttaacgggt ctttttcgat ttcaagacaa ggtgcggcaa
    14221 cgcctggtga gtaggccagc gccagatcgc gctgcgttgc cagaggcttg gttggagaaa
    14281 cctggatttt ccctggaact ggaaattcat ggaaatcaag tgcactttgt tttaactggt
    14341 catccatttg gttgttcctt tcacgtaacg ttcacaaata aagtgtgtgg gcaacagcct
    14401 ctgcccacaa cgtggcgcac attattaccc cgccggagtc tacagacttt gagcaagtcc
    14461 aaactctcac cattaatata atgttttggt aataatccta taacactgat gttacctgct
    14521 taatccagca ataccatgcc tgtctgctat gcttttttga tgcgtttagc gaaatttctc
    14581 agaagtgtga attaacgcac tcatctaaca ctttactttt caaggagtat ttcctatgaa
    14641 cgagttagac ggcatcaaac agttcaccac tgtcgtggca gacagcggcg atattgagtc
    14701 cattcgccat tatcatcccc aggatgccac caccaatcct tcgctgttgc tcaaggctgc
    14761 cggattatca caatatgagc atttaataga cgatgctatc gcctggggta aaaaaaatgg
    14821 caagacccag gaacaacagg tggtcgcagc gtgtgacaaa ctggcggtca atttcggtgc
    14881 tgaaattctc aaaatcgtac ccggtcgcgt gtcaacagaa gttgatgcac gcctctcttt
    14941 tgataaagaa aagagtattg agaaggcgcg ccatctggtg gacttgtatc agcaacaagg
    15001 cgttgagaaa tcacgcattc tgatcaaact ggcttcgacc tgggaaggaa ttagcgcggc
    15061 agaagagctg gaaaaagaag gtattaactg caacctgacg ctgctgtttt cttttgccca
    15121 ggcgcgggcc tgtgcggaag caggcgtttt tctgatttcg ccgtttgtcg ggcgtattta
    15181 tgactggtat caggcacgca agccgatgga cccgtatgtg gtggaagaag atccgggcgt
    15241 taaatcggtg cgcaatatct acgactacta taagcaacac cactatgaaa ccattgtgat
    15301 gggcgcgagc ttccgtcgca ccgaacaaat cctcgcctta accggctgcg atcgactgac
    15361 tatcgcaccg aatttgctga aggagctgca ggaaaaagtt tcgccagtgg tacgtaaatt
    15421 aatcccacct tctcagacgt tcccacgccc agctcccatg agcgaagcgg agttccgttg
    15481 ggagcacaat caggatgcga tggcggtaga aaaactgtct gaaggcattc gtctgttcgc
    15541 cgttgatcaa cgcaaactgg aagatcttct tgccgccaaa ctataaacca gccacggagt
    15601 gttatatgtc ccgaaaagac cttgccaatg cgattcgcgc actcagtatg gatgcggtac
    15661 aaaaagccaa ctctggtcat cccggcgcgc cgatgggcat ggctgatatt gccgaagtgc
    15721 tgtggaacga ttttcttaaa cataacccta ccgacccaac ctggtatgat cgcgaccgct
    15781 ttattctttc caacggtcac gcgtcgatgc tgctctacag tttgctgcat ctgaccggtt
    15841 acgacctgcc gctggaagag ctgaagaact tccgtcagtt gcattcgaaa accccaggcc
    15901 acccggagat tggttatacg cccggtgttg aaaccaccac cggtccactt ggacaaggtt
    15961 tggcgaacgc cgtcggactg gcgatagcag agcgtacact ggcggcgcag tttaatcagc
    16021 cggatcatga aattgtcgat cacttcacct atgtgtttat gggcgacggc tgcctgatgg
    16081 aaggtatttc ccacgaagtc tgttcgctgg cgggcacgct aggactgggc aagctgattg
    16141 gtttttacga tcacaacggt atttcgattg atggagaaac cgaaggctgg tttaccgacg
    16201 atacggcaaa acgttttgaa gcctatcact ggcatgtgat ccatgaaatc gacggtcacg
    16261 atccgcaggc ggtgaaggaa gcgatccttg aagcgcaaag cgtgaaagat aagccgtcgc
    16321 tgattatctg ccgtacggtg attggctttg gttcgccgaa taaagcaggt aaggaagagg
    16381 cgcacggcgc accactgggg gaagaagaag tggcgctggc acggcaaaaa ctgggctggc
    16441 accatccgcc atttgagatc cctaaagaga tttatcacgc ctgggatgcc cgtgaaaaag
    16501 gcgaaaaagc gcagcagagc tggaatgaga agtttgccgc ctataaaaag gctcatccgc
    16561 aactggcaga agagtttacc cgacggatga gcggtggttt accgaaggac tgggagaaaa
    16621 cgactcagaa atatatcaat gagttacagg caaatccggc gaaaatcgct acccgtaagg
    16681 cttcgcaaaa tacgctt
//
LOCUS       DAJVUN010000081        16606 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.081, whole genome shotgun sequence.
ACCESSION   DAJVUN010000081 DAJVUN010000000
VERSION     DAJVUN010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16606
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.081"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..731
                     /gene="rihB"
                     /locus_tag="OQQ76_002262"
     CDS             <1..731
                     /gene="rihB"
                     /locus_tag="OQQ76_002262"
                     /EC_number="3.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribosylpyrimidine nucleosidase"
                     /protein_id="HCS1968748.1"
                     /translation="MRKQIVADNIHGETGLDGPVFESLTRQAESTHAVKYIIDTLMAS
                     DGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEA
                     ARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENY
                     GLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKV
                     GITIDTDWFWGLVEECVRGYIKTH"
     gene            831..2078
                     /locus_tag="OQQ76_002263"
     CDS             831..2078
                     /locus_tag="OQQ76_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HCS1968749.1"
                     /translation="MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGG
                     IMLWLPAGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL
                     PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDHLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFAR
                     LLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAVAIIALIN
                     GIIGGVGGWFGFAHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAY
                     LNFSPYLQTGGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLR
                     ALAAATLSNLMSATIAGFFIGLA"
     gene            complement(2134..3222)
                     /locus_tag="OQQ76_002264"
     CDS             complement(2134..3222)
                     /locus_tag="OQQ76_002264"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1968750.1"
                     /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK
                     GRIKGKGYILTEQEYCVVVGTINMDIRGMADIRYPQAASHPGTIHCSAGGVGRNIAHN
                     LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT
                     VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT
                     VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNAAVNALHQQGVQQLFVY
                     LPDESVYCSEKDGELFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAVA
                     CAAISRASGSLNNPTLSADNALSLVPMV"
     gene            complement(3225..4082)
                     /gene="nfo"
                     /locus_tag="OQQ76_002265"
     CDS             complement(3225..4082)
                     /gene="nfo"
                     /locus_tag="OQQ76_002265"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HCS1968751.1"
                     /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL
                     TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG
                     LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH
                     LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLN
                     DAKSTFGSRVDRHHSLGEDNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLK
                     AQQTEKAVA"
     gene            complement(4156..5205)
                     /locus_tag="OQQ76_002266"
     CDS             complement(4156..5205)
                     /locus_tag="OQQ76_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HCS1968752.1"
                     /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF
                     SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI
                     SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA
                     SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI
                     SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI
                     FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI
                     VGGGAINYVIQSIIA"
     gene            5305..6186
                     /locus_tag="OQQ76_002267"
     CDS             5305..6186
                     /locus_tag="OQQ76_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1968753.1"
                     /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ
                     LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY
                     ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE
                     DELVVFAAPTSPLARGPITLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMEL
                     GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS
                     NALRRFLDYCDPANVPR"
     gene            6391..7860
                     /gene="lysP"
                     /locus_tag="OQQ76_002268"
     CDS             6391..7860
                     /gene="lysP"
                     /locus_tag="OQQ76_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-specific permease"
                     /protein_id="HCS1968754.1"
                     /translation="MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS
                     QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY
                     WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS
                     LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF
                     QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV
                     KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR
                     IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS
                     HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV
                     AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK"
     gene            8153..10133
                     /gene="cirA"
                     /locus_tag="OQQ76_002269"
                     /pseudo
     CDS             8153..10133
                     /gene="cirA"
                     /locus_tag="OQQ76_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416660.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor CirA"
     gene            complement(10165..11001)
                     /gene="yeiG"
                     /locus_tag="OQQ76_002270"
     CDS             complement(10165..11001)
                     /gene="yeiG"
                     /locus_tag="OQQ76_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HCS1968755.1"
                     /translation="MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPP
                     VLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGF
                     YLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPG
                     KYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLID
                     QGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL
                     LK"
     gene            11259..11927
                     /gene="folE"
                     /locus_tag="OQQ76_002271"
     CDS             11259..11927
                     /gene="folE"
                     /locus_tag="OQQ76_002271"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HCS1968756.1"
                     /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM
                     TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV
                     RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL
                     IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV
                     RHHN"
     gene            11944..13101
                     /locus_tag="OQQ76_002272"
     CDS             11944..13101
                     /locus_tag="OQQ76_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 family protein"
                     /protein_id="HCS1968757.1"
                     /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITP
                     QDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF
                     WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVELGVLLLLGLISDSQTSRA
                     WTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRS
                     GWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPF
                     QAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTMLFYHLGLFMHFDR
                     LELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGTAISKTSR"
     gene            13243..14283
                     /gene="galS"
                     /locus_tag="OQQ76_002273"
     CDS             13243..14283
                     /gene="galS"
                     /locus_tag="OQQ76_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708050.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalS"
                     /protein_id="HCS1968758.1"
                     /translation="MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELD
                     YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE
                     KERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDN
                     LSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGT
                     PDMPGGEAAMVELLGRNLQLTAIFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP
                     IARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQN
                     AAAITNSTNQAM"
     gene            14563..15561
                     /gene="mglB"
                     /locus_tag="OQQ76_002274"
     CDS             14563..15561
                     /gene="mglB"
                     /locus_tag="OQQ76_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HCS1968759.1"
                     /translation="MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVR
                     KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK
                     ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK
                     DGQIQSVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW
                     LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGT
                     VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK"
     gene            15622..>16606
                     /locus_tag="OQQ76_002275"
     CDS             15622..>16606
                     /locus_tag="OQQ76_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1968760.1"
                     /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHAL
                     MGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ
                     RSVMDNMWLGRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEI
                     AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE
                     VTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQ
                     PSIRDVSFDLHKGEILGIAGLMGAKRTDIVETLFGIREKSAGTITLHGKKIN"
BASE COUNT         3970 a         4108 c         4431 g         4097 t
ORIGIN      
        1 ttatgcgtaa acaaatcgtt gccgataata ttcacggtga aaccggactg gatggtccgg
       61 tattcgagtc gctgacccgc caggcagaaa gtacccacgc ggtgaaatac atcattgata
      121 ccctgatggc aagcgatggc gatatcactc tggtgccggt tggtccgctt tcaaatatcg
      181 cggtggcaat gcgtatgcaa cccgcgatcc tgcccaaaat ccgtgaaatt gtgctaatgg
      241 gcggcgctta cggtacaggc aacttcacgc catctgccga gttcaacatc tttgctgatc
      301 cggaagcagc ccgcgtggtg ttcacctccg gcgttccatt agtgatgatg ggcctcgatc
      361 tcaccaacca gactgtttgc accccggacg tgattgcacg gatggaaagg gcaggcggcc
      421 ctgccggaga gctgttcagc gacatcatga acttcactct caaaacgcag ttcgaaaact
      481 acggcctggc tggcggcccg gtgcacgacg ccacctgcat cggttatctg attaaccctg
      541 atggcattaa aacccaggag atgtacgtcg aagtggacgt caacagtggc ccttgctatg
      601 ggcgtaccgt ctgcgacgag ctgggcgttc ttggcaagcc cgctaatacc aaagtcggca
      661 tcactattga taccgactgg ttctggggct tagtcgaaga gtgcgtgcgc ggctacatca
      721 aaacccatta agtgttgata acaagccggg tcagtatcgc aagatccaag cccggctatt
      781 tctgatgggc agaaagccgt cgcccaatat gacatgaaga gataataact atggatgtca
      841 tgagaagtgt tctgggaatg gtggtattgc tgacgattgc gtttttgctg tcagtaaaca
      901 agaagaagat cagcctgcgt accgttggcg cggcgttagt gttacaggtc gtgattggcg
      961 ggattatgct ttggttaccg gcagggcgtt gggtcgctga aaaagtcgct tttggcgtgc
     1021 ataaagtgat ggcgtacagc gacgcgggta gcgcatttat cttcggttcg ctggtcgggc
     1081 cgaaaatgga cacgctgttt gatggcgcag gatttatctt tggtttcagg gtattaccgg
     1141 caattatctt cgtcactgca ctggtgagta ttctctacta catcggtgtg atggggattt
     1201 taattcgcat tctcggcggt atattccaga aagcattaaa tatcagcaag attgagtcat
     1261 tcgtcgcggt caccaccatt ttcctcgggc aaaacgaaat tccggcgatc gtcaaaccct
     1321 ttatcgatca tctgaatcgc aatgaattat ttacagcgat ttgtagtggc atggcctcga
     1381 ttgctggttc gacaatgatt ggttacgccg ccctgggcgt acctgtggaa tatttgctgg
     1441 cggcatcgtt aatggcgatc ccaggcggga tcttgtttgc ccgcctgtta agcccggcta
     1501 cggaatcttc gcaggtttcc tttaataacc tctctttcac cgaaacaccg ccaaaaagca
     1561 ttattgaagc cgctgcgaca ggggcaatga ccgggctgaa aatcgccgcc ggtgtagcga
     1621 cagttgttat ggcagtcgcc atcattgcgt taattaatgg tattatcggc ggcgttggcg
     1681 gctggtttgg ttttgcacat gcctcgctgg agtccatttt aggttacctg ttggccccat
     1741 tggcgtgggt gatgggggtt gactggagtg atgcaaatct tgccgggagt ttgattgggc
     1801 agaagctggc gatcaatgaa tttgtcgctt atctcaattt ctcgccatat ctgcaaacgg
     1861 gtggcactct ggatgctaaa accgtggcga ttatttcttt cgcgttgtgc ggtttcgcta
     1921 actttggttc tatcggggtg gtggtggggg cgttttctgc ggttgcgcca caccgtgcgc
     1981 cggaaatcgc ccaacttggt ttacgcgcgc tggcggcggc gacactttct aacctgatga
     2041 gtgctactat tgcaggattc tttattggtt tagcgtagtg cgcaatttat gagccggata
     2101 agatgcggtc aagcgtcgaa tccggcaaca ttgttacacc attggcacta atgaaagcgc
     2161 gttatcggca gacagggtag ggttgtttaa gctgccgctg gcgcgcgaaa ttgccgcgca
     2221 ggctaccgca aaacgggcgc tgtcgcggaa actgtatcct tcaagaaagc tatatactag
     2281 gcccgccata aaaccatcgt cagcaccaaa actgtctact gtcgtatgcg ctggcgcggt
     2341 cagcaaaaat agttctccat ccttttcgct gcaataaact gactcatcgg gcaaataaac
     2401 aaacagttgc tgaacacctt gctgatgcaa tgcattcact gcggcattac ggtcagcatc
     2461 gctggtgatc gcctgtcccc ataaaatttc cagctccggt aaagtgggtt tcagggtgtg
     2521 aatatgcgcc agccagtgtt tgattttgcc cgctttgaat tctgaaacgg tatcgacaaa
     2581 caccgggatt tcatcagcga gggtaaagac ccattccagc gcctcggctg tcaggttgca
     2641 atcagccagt accacgcccg catgacgaag taaatcgcgc gacccgttca gtagttgcgg
     2701 tgtcaactgt tccagcagat gggtatcgtt aatcgccagc acggtttgat cgtctcgatt
     2761 ggcaattgcc agatacgtcg atgtgctttg accatgcaaa cgaacgcagc cggagacatt
     2821 cacgccggca cggcgcgttt cttccaggag catttcgcca taaaagtcat cgccaatcac
     2881 tgaaagcaaa tggacgtcac ggcctaacag cgccagattg tgggcgatgt tgcgtcccac
     2941 gccgcccgcc gagcaatgaa ttgtaccggg atgagaagcc gcttgcgggt aacggatatc
     3001 cgccatcccg cgaatatcca tattgattgt ccccaccact acgcagtatt cctgctcggt
     3061 gagaatgtaa cctttgcctt taatccgccc tttgcgcatt aaatccataa tatgcgccgc
     3121 aacgcgcgaa cgactgattt gcagcatgtc cgcaatttcg ttctgctgaa tcagcgggtt
     3181 acgccgtaaa attgcaagga tctccttttc ccggttattc atcttcaggc taccgctttt
     3241 tcagtttgtt gcgctttcag ccaggcgatc tcttctgccc agatatccgg gttgatggtt
     3301 tcaaggatca gcggaatgcc gtcgaaacgg tcgtcctgca tgatccagcg gaacgcatca
     3361 tgaccgatat tgtcttcacc gaggctatga tggcggtcaa cgcggctgcc aaaggtgctt
     3421 ttcgcatcgt taaggtgcat cccgcgcaga tacttaaagc caacaatacg ggcaaaatcc
     3481 gcgaacgttt tctcgcattc ggctggagta cgcaaatcat acccggcagc gaaagcatgg
     3541 caggtatcaa tgcagacgcc gacacgggat ttatcttcca cgccgtcgat aatcgccgcg
     3601 agatgttcga atttaaaccc taagttactg ccctgaccgg cggtgttttc aatcaccgct
     3661 gttacacctt gagttttatc cagcgcaatg ttgatggatt cggcaatacg cgcaaggcaa
     3721 tcctcttctg aaatctgcat cagatggctg ccagggtgga agttgagcaa agaaagcccc
     3781 agttgttcgc aacgctgcat ttcatctata aaggcatcgc gcgatttttc cagagcttca
     3841 gtgaccggat gtccgaggtt aatcagatag ctgtcgtggg gaagaatttg cgccgatgtg
     3901 tagtgatatt tttcacaggc cgctttgaat tcatcgatgg tttgcgtcgt gagcggtgcg
     3961 gcacgccact gacgttggtt tttggtgaac aaggcaaacg cggttgcgtc gatttcggcg
     4021 gcgcgaattg cggcatttgc cagaccgcca gcagcactaa cgtgcgctcc aatgtatttc
     4081 atgcgaggac tcctgttaaa cccgctggag gaaaacggta atgatagcgg gttaacagga
     4141 gcaagatgta gtggtttatg cgatgatgct ttgaatcaca tagttaatcg caccaccacc
     4201 aacaatcagc caggcaaaca gtaccagtgc catcagcaga ggtttcgccc cggctttttt
     4261 cagcgcgctg acgtgagtgg tcagacccag cgccgccatc gccattgcca gcaggaaggt
     4321 atccagcgtt accagcatgt tcaccacgct ctgcggtaac aggtggaacg agttaaagat
     4381 ggcaacgacg atgaacaaga tggcaaacca cggaatagtg attttgcttt tctcgccgct
     4441 gttcgcccca gacagctgtt taacacgcgc cgccagcagg atgaggaacg gagccagcat
     4501 catcacgcgc agcattttgg aaataactgc tgcgttttcc gcatccgggc tgatggcatg
     4561 acctgccgcc accacctgcg ccacttcgtg cacagtagaa ccaatgtaga taccgaaagt
     4621 ttccggacta aaccattgag acatcagcgg atatatcgcc gggtagagga aaatcgcgac
     4681 ggtcccgaag ataacaacgg ttgcaacagc cacggttact ttactggctt ccgctttcac
     4741 taccggctca gtcgccagta ccgcggcagc accacagata ctgctaccgg caccgatcaa
     4801 ccagctggtg tgcttatcca gaccaaacac tttctgcccc aggaagcaag ccagcaggaa
     4861 ggtactggac agcgtcaaca cgtcaatgat gatcccactg ataccgacat cggcaatttg
     4921 cgagaacgtc agacggaagc cataaagaat gatacccaga cgtaataaat attgcttggc
     4981 aaacagcaca ccaccgtcac agcttttcca gatgtgcgga tagatggtgt tgcctaaaac
     5041 catccccaac aagattgcga gggtgagggc actaaacccg gcacccgcaa ccgcgggaat
     5101 ggaaccaccc cacagggcga ccccggtgat aactgcactc agggctaacc ccggaataaa
     5161 atgccacagt gtacgatgtt gtttctgtaa ggtgatattc gtcataaccc tctccttata
     5221 accgggcata aggttacgac taactggttt aaaaataaaa ttgattatat atttataatt
     5281 aatctttata agtggtaagc gactatgcac atcaccctcc ggcagttgga agtttttgca
     5341 gaagtattga aaagtggatc aaccacccag gcgtcggtga tgctggcgtt gtcgcaatca
     5401 gcagtgagcg cagccttgac cgacctggaa gggcagcttg gcgtgcaact gtttgatcgc
     5461 gtggggaaaa gactggttgt taatgaacac gggcggctgc tctatccgcg tgcgttggca
     5521 ttgcttgaac aggcggttga aatcgaacaa ctgtttcgcg aagacaacgg cgcgattcgt
     5581 atctatgcca gtagtaccat cggtaactac attctgcctg cagttatcgc ccgttatcgc
     5641 catgattatc cgcagttgcc gattgaactt agcgttggga acagccagga cgtgatgcaa
     5701 gcggtgctgg atttccgcgt tgatattggc tttattgaag gaccgtgcca cagcactgaa
     5761 atcatttctg aaccgtggct ggaagacgag ctggtggttt tcgccgcgcc gacttcgccg
     5821 ttggctcgtg gtccgatcac cttagaacag ctggccgctg cgccgtggat cctgcgtgaa
     5881 cgcggttccg gcacgcggga gattgtcgat tatctattgc tgtcacattt accgaagttt
     5941 gagatggcga tggaattagg taactccgag gcaatcaaac atgcggtgcg tcatgggttg
     6001 ggaattagtt gcctgtcgcg acgggtgatt gaagatcaat tgcaggcagg cacattaagt
     6061 gaagttgcgg tccctctgcc gcgcctgatg cgtacgttgt ggcgtataca tcatcggcaa
     6121 aaacaccttt ccaacgcgct acggcgcttt ctggactatt gcgatcccgc gaatgtaccg
     6181 cgttaagttg ctgtacaaga acatgctggt gctgtgtcga tttcgtgacg cagcgccctc
     6241 agcatgcatt cgccagaaaa gagattggct gctttactta taatccctgg gcgatcatga
     6301 aggtgtctta taaccgtgta tttctgccgg aaggattgcc aattgtctgc tacaatcgcg
     6361 cctcattttt aagatggata gcatttttgt atggtttccg aaactaaaac cacagaagcg
     6421 ccgggcttac gccgtgaatt aaaggcgcgt cacctgacga tgattgccat tggcggttcc
     6481 atcggtacag gtctttttgt tgcctctggc gcaacgattt ctcaggcagg tccgggcggg
     6541 gcattgctct cgtatatgct gattggcctg atggtttact tcctgatgac cagtctcggt
     6601 gaactggctg catatatgcc ggtttccggt tcgtttgcca cttacggtca gaactatgtt
     6661 gaagaaggct ttggcttcgc gctgggctgg aactactggt acaactgggc ggtgactatc
     6721 gccgttgacc tggttgcagc tcagctggtc atgagctggt ggttcccgga tacaccgggc
     6781 tggatctgga gtgcgttgtt cctcggcgtt atcttcctgc tgaactacat ctcagttcgt
     6841 ggctttggtg aagcggaata ctggttctca ctgatcaaag tcacgacagt tattgtcttt
     6901 atcatcgttg gcgtgctgat gattatcggt atcttcaaag gcgcgcagcc tgcgggctgg
     6961 agcaactgga caatcggcga agcgccgttt gctggtggtt ttgcggcgat gatcggcgta
     7021 gctatgattg tcggcttctc tttccaggga accgagctga tcggtattgc tgcaggcgag
     7081 tccgaagatc cggcgaaaaa cattccacgc gcggtacgtc aggtgttctg gcgaatcctg
     7141 ttgttctatg tgttcgcgat cctgattatc agcctgatta ttccgtacac cgatccgagc
     7201 ctgctgcgta acgatgttaa agacatcagc gttagtccgt tcaccctggt gttccagcac
     7261 gcgggtctgc tctctgcggc ggcggtgatg aacgcagtta ttctgacggc ggtgctgtca
     7321 gccggtaact ccggtatgta tgcgtctact cgtatgctgt acaccctggc gtgtgacggt
     7381 aaagcgccgc gcattttcgc taaactgtcg cgtggtggcg tgccgcgtaa tgcgctgtat
     7441 gcgacgacgg tgattgccgg tctgtgcttc ctgacctcca tgtttggcaa ccagacggta
     7501 tacctgtggc tgctgaacac ctccgggatg acgggtttta tcgcctggct ggggattgcc
     7561 attagccact atcgcttccg tcgcggttac gtattgcagg gacacgacat taacgatctg
     7621 ccgtaccgtt caggtttctt cccactgggg ccgatcttcg cattcattct gtgtctgatt
     7681 atcactttgg gccagaacta cgaagcgttc ctgaaagata ccattgactg gggcggcgta
     7741 gcggcaacgt atattggtat cccgctgttc ctgattattt ggttcggcta caagctgatt
     7801 aaaggaactc acttcgtacg ctacagcgaa atgaagttcc cgcagaacga taagaaataa
     7861 gtttcctccc ttccttgcta agccctctca accgagaggg ctttttcaat tccatttccc
     7921 tgacaaatca tgcggatata aaatttaaca tttggattga taattgttat cgtttgcatt
     7981 atcgttacgc cgcaatcaaa aaaggctgac aaatcagagg ctgttccggc tttctgggat
     8041 gatcacctgc atacaaataa gtccaccgcg atgctgccgt acgcaagggg acgtgaagaa
     8101 gatgtgagcg ataacccatt ttattttcgt agttacctca tggaaatatg gaatgtttag
     8161 gttgaaccct ttcgtacggg tcgggctgtg tttgtccgct atttcttgtg catggcctgt
     8221 gttagcggtc gatgatgatg gcgaaacgat ggttgtcact gcatcttccg ttgaacaaaa
     8281 cctcaaagat gcacccgcca gtatcagcgt cattacccag gaagacctgc agcgaaaacc
     8341 ggtacagaat ctgaaggatg tcctcaaaga agtgcctggc gtacaactga cgaacgaagg
     8401 ggataaccgt aagggcgtta gtattcgtgg tctggacagc agctacaccc tgattctcgt
     8461 cgacggtaaa cgcgttaact cccgcaatgc cgtcttccgc cacaatgatt tcgatctgaa
     8521 ctggatcccg gtcgattcca tcgaacgtat tgaagtggtt cgtggcccga tgtcgtcgct
     8581 atacggctcc gatgcgctcg gcggtgtagt gaatatcatc accaaaaaaa tcggtcagaa
     8641 atggtcgggt accgttaccg tcgataccac cattcaggaa catcgcgatc gcggtgatac
     8701 ctataacggt cagttcttta ccagtggacc attaattgat ggtgtgctgg gaatgaaagc
     8761 ttacggcagc ctggcaaaac gtgaaaagga tgacccgcaa aactcaacga ccaccgatac
     8821 cggagaaacg ccgcgtattg aaggattctc cagccgcgac ggcaatgttg aatttgcctg
     8881 gacaccgaat caaaatcacg attttactgc cggatacggt ttcgaccgtc aggaactcgc
     8941 tggacaaaaa ccgcctggaa cgccagaact actccgtcag ccataatggg cgttgggatt
     9001 acggcaccag cgaactgaaa tactacggtg agaaagtcga gaacaaaaac cctggcaaca
     9061 gcagcccgat aacttccgaa agcaatacgg tcgacggcaa atacacgttg ccgctgacgg
     9121 cgattaatca gtttctcacg gttggcggtg aatggcgtca cgacaaactt agcgatgcgg
     9181 tgaacctgac cgggggaacc agctccaaaa cgtctgccag ccagtacgcg ctgtttgtgg
     9241 aagatgaatg gcggatcttc gagccgctgg cgctgacgac cggcgtgcgt atggacgatc
     9301 acgaaaccta cggtgaacac tggagtccgc gtgcctacct ggtttataac gccaccgaca
     9361 ccgtaacggt gaaagggggc tgggcgacgg catttaaagc accttctctg ttgcaactta
     9421 gccctgactg gacgagcaat tcctgccgtg gcgcatgtaa gattgtgggt agcccggatc
     9481 tgaaaccaga aaccagcgaa agttgggagc tggggcttta ctacatgggt gaagaaggct
     9541 ggctggaagg ggttgaatcc agcgttaccg ttttccgtaa cgatgtgaaa gatcgtatca
     9601 gcatcagccg tacgtctgac gtcaacgctg caccgggcta ccaaaacttt gttggttttg
     9661 agacgggcgc taacggacgg cgcataccgg tatttagcta ctacaacgtt aacaaagctc
     9721 gtattcaggg cgtggaaacc gaactgaaaa ttccgttcaa cgatgaatgg aaactgtcga
     9781 tcaactacac ctacaacgat ggtcgtgatg tcagcaacgg cgaaaacaaa ccgctatccg
     9841 atctgccgtt ccatactgct aacggtacgc tggactggaa accgctggcg ctggaagact
     9901 ggtcattcta tgtttctggt cactataccg ggcagaaacg cgccgacagc gcgacggcta
     9961 aaacaccggg cggttatacc atctggaata ccggcgcggc ctggcaggtg actaaagacg
    10021 tcaaactgcg cgcaggcgtg ctgaaccttg gcgacaagga tctcagtcgt gacgactaca
    10081 gctataacga agacggacgt cgttacttta tggcagtgga ttatcgcttc tgatgagaag
    10141 atgcccggcg aaccgggcgg actttcactt cagtaaatac tgcgcatgga agcgcaggtg
    10201 atcctctata aaagaggcga tgaagtagta actgtgatca tatcccggct gaatacgcag
    10261 cgtcatcggc cacgctttct ggcgcgcggc ttctgccagt accgcaggtt gcaactggtc
    10321 ggcaagaaac tgatcattat cgccctgatc gataagcgtc gggatcgcat cctgcgcgtt
    10381 actggcatac atcagcgcgc aactgtccca ttccagccat gcatttttgt cctcacctaa
    10441 atagctgcta aacgctttga ttccccacgg gacgctgcac ggattcacaa ttggcgcaaa
    10501 ggccgaaacg ctggtgtatt tacccggatt tttcagcgcc ataatcagcg caccgtgacc
    10561 acccattgag tgaccgctaa tggcgcagcg gtcgctgaca ttaaattgcg attgaaccag
    10621 cgccggtaat tcatcgcgca gataatcata catccggtaa tgcgtcgccc acggcggttg
    10681 cgtggcatta agataaaagc ctgcgccctg gcctaaatcg tagccatcgt cgttggcaac
    10741 cttttcgccg cgcgggctgg tgtctggcat caccagtaca atccccagtt ctgccgccac
    10801 gcgctgggca cccgccttgg tggtgaagtt ctcgtcattg caggttaatc cggaaagcca
    10861 gtacagcact ggtggcgggg tgtgatcacg agggggtggg agaaagatac tgaacgtcat
    10921 cgggcagttt aaggtactgg agtcgtgtcg ccagcgttgc tgccagcctt caaaacagcg
    10981 gtgctcttcg agcatttcca tgcgtggctc cttgttgtgt tgtttgcaat ttcttcatca
    11041 taccgtttat tcaatgtgct gtgagtaact ttcacttccg tatttgcata acgatgtttt
    11101 aacatctgct gatgaaaggc agcggcaatt acaataatta tcgctgtgaa tactggatta
    11161 tgtgcgccgc ctcacgcaca ataatcaggc tgtaaatcag cttaataact ttgcccccac
    11221 gcagggcgga ggcgtcacac ctgcaggaga aatcataaat gccatcactc agtaaagaag
    11281 cggccctggt tcatgaagcg ttagttgcgc gaggactgga aacaccgctg cgcccgcccg
    11341 tgcatgaaat ggataacgaa acgcgcaaaa gccttattgc tggtcatatg accgaaatca
    11401 tgcagctgct gaatctcgac ctggctgatg acagtttgat ggaaacgccg catcgcatcg
    11461 ctaaaatgta tgtcgatgaa attttctccg gtctggatta cgccaacttc ccgaaaatca
    11521 ccctcattga aaacaaaatg aaggtcgatg aaatggtcac cgtgcgcgat atcactctga
    11581 ccagtacctg tgaacaccat tttgttacca tcgatggcaa agcgacggtg gcttatatcc
    11641 cgaaagattc ggtgatcggt ctgtcaaaaa ttaaccgtat cgtgcagttc tttgcccagc
    11701 gtccgcaggt gcaggaacgt ctgacgcagc aaattcttat tgcgctacaa acgctgctgg
    11761 gcaccaataa cgtggctgtc tccattgatg cggtgcatta ctgcgtgaaa gcgcgtggca
    11821 tccgcgatgc aaccagtgcc acaacaacga cctctcttgg tggattgttc aaatccagtc
    11881 agaatacgcg ccacgagttt ctgcgcgctg tgcgtcatca caactgatta aaaggcagga
    11941 accatggagc gcaacgtaac gctcgatttt gttcgcggcg tcgccattct ggggatcctg
    12001 ctattaaaca tcagcgcctt tgggctacca aaggcggctt atctcaatcc cgcttggtac
    12061 ggcgctatta cgccgcagga tgcatggacc tgggcatttc tcgatctcat cggccaggtg
    12121 aaattcctca cgctttttgc gctgctgttt ggtgcgggcc tgcaaatgtt gctgccccgt
    12181 ggcagacgct ggatccagtc gcggttaacg ctgttagtct tgctgggttt tattcacggt
    12241 ttattgttct gggacggcga tattctgctg gcttacgggc tggtgggctt aatctgctgg
    12301 cggctggtgc gcgatgcgcc atcggtaaaa agcctgttta atacaggcgt catgctttat
    12361 ctggtggagc ttggcgtttt gctgttattg gggctgattt ccgacagcca gaccagccgc
    12421 gcctggacgc cggatgcatc ggctattttg tatgaaaaat actggaagct tcacggcggc
    12481 gttgaagcaa tcagtaatcg tgccgatggt gttggcaaca gtttactggc actgggcgca
    12541 cagtatggct ggcaactggc agggatgatg ctcattggtg cggcgctgat gcgcagcggc
    12601 tggctgaaag ggcagttcag cttacgtcac tatcgtcgta ctggttttgt gctggtggcg
    12661 attggggtga ctattaacct tcctgccatc gccctgcaat ggcagctgga ctgggcgtat
    12721 cgctggtgtg ccttcttact tcaaatgccg cgggaactga gtgcgccgtt tcaggcgatt
    12781 ggctatgcgt cgctgtttta tggcttctgg ccgcaattga gccgctttaa gctggtgctt
    12841 gcgatcgcct gcgtcggacg gatggcgctg accaactatc tattgcaaac gctgatttgt
    12901 accatgcttt tttaccacct cggtttgttt atgcattttg accgcctgga gctgctggcg
    12961 tttgttattc cggtatggct ggcgaatatc ctcttctctg ttatctggct gcgttacttc
    13021 cgccaggggc cggtggaatg gctctggcgt cagttaactt tgcgtgctgc cggaacggca
    13081 atatctaaaa catcaagata acgatctgga tcacattcgt taacaaaacg gctgtaaccg
    13141 tttccattgc tgtgactcga ttcacgaagt cctgtattca gtgctgacaa aatagccgcc
    13201 agcaagcagt catttactgc aatctcataa caggtagtga atatgatcac cattcgtgat
    13261 gtagcgcgtc aggctggcgt ctctgtggca acggtttccc gggtgctcaa taacagcacg
    13321 ctggtcagtg ccgacacgcg tgaagcagta atgaaagccg tgagtgagct ggattatcgg
    13381 ccaaacgcca atgcccaggc gctggcaact caggttagcg acaccattgg cgtggtggtg
    13441 atggacgttt ctgatgcgtt tttcggcgcg ctggtaaaag cggtggatct agtcgctcag
    13501 cagcatcaga aatacgtgct aatcggcaat agctatcatg aagcggaaaa agagcgtcac
    13561 gccattgagg tgttaattcg ccagcgttgt aatgcgttga ttgttcactc aaaagcattg
    13621 agtgacgatg aactggcgca atttatggat aacattcccg gtatggtgtt aatcaaccgc
    13681 gttgtgccgg ggtacgccca tcgttgcgtt tgcctggata atctcagcgg tgcccgaatg
    13741 gcgacgcgca tgttgctgaa taacggtcat caacgtattg gttatctttc ttccagtcac
    13801 ggcattgaag atgacgccat gcgtaaagca ggctggatga gtgcgttgaa agagcaggat
    13861 attattccgc cggaaagctg gattggcact ggtacgccgg acatgccggg cggtgaggcg
    13921 gcgatggttg aactgctggg gcgcaatcta caacttaccg ctatatttgc ttataacgac
    13981 aatatggccg ctggcgcact gacagcatta aaagataatg gcattgcgat tccgttacat
    14041 ctctcaatca tcggtttcga tgatattccc atcgcccgtt acaccgaccc gcaattaacg
    14101 accgtgcgtt atcccattgc ttcaatggct aaattagcca ccgaactggc cttgcagggg
    14161 gcagcaggca atattgatcc tcgtgccagc cactgtttta tgccgacgtt agtgcgtcgc
    14221 cattctgtcg caacgcgcca gaatgcggcg gcgatcacta actcaacaaa tcaggcgatg
    14281 taaccgcttt caatctgtga gtgatttcac agtatcttaa caatgtgata gctatgattg
    14341 caccgtttta acgttgtaac ccgtatgtaa cagtgaataa tcactttcac cgaggtaata
    14401 gcgtcataac aacaattaaa gccgttttct ggagcgttac cgggcatgga agaacgaatt
    14461 ttaaaaagtg agcttcggcg ttcagtaaca cttcattaac tctactgccc tgccgagcat
    14521 ttatctcaag cactaccctg cataagaaaa accggagata ccatgaataa gaaggtgtta
    14581 accctgtctg ctgtgatggc cagcatgtta ttcggtgccg ctgcacacgc tgctgatact
    14641 cgcattggtg taacaatcta taagtacgac gataacttta tgtctgtagt gcgcaaggct
    14701 attgagcaag atgcgaaagc cgcgccagat gttcagctgc tgatgaatga ttctcagaat
    14761 gaccagtcca agcagaacga tcagatcgac gtattgctgg cgaaaggggt gaaggcactg
    14821 gcaatcaacc tggttgaccc ggcagctgcg ggtacggtga ttgagaaagc gcgtgggcaa
    14881 aacgtgccgg tggttttctt caacaaagaa ccgtctcgta aggcgctgga tagctacgac
    14941 aaagcctact acgttggcac tgactccaaa gagtccggca ttattcaggg cgatttgatt
    15001 gctaaacact gggcggcgaa tcagggttgg gatctgaaca aagacggtca gattcagtcc
    15061 gtactgctga aaggtgaacc gggccatccg gatgcagaag cacgtaccac ttacgtgatt
    15121 aaagaattga acgataaagg catcaaaact gaacagttac agttagatac cgcaatgtgg
    15181 gataccgctc aggcgaaaga taagatggac gcctggctgt ctggcccgaa cgccaacaaa
    15241 atcgaagtgg ttatcgccaa caacgatgcg atggcaatgg gcgcggtaga agcactgaaa
    15301 gcacacaaca agtccagcat tccggtgttt ggcgtcgatg ctctgccaga agcgctggcg
    15361 ctggtgaaat ccggtgcact ggcgggcacc gtactgaacg atgctaacaa ccaggcgaaa
    15421 gcgacctttg atctggcgaa aaacctggcc gatggtaaag gtgcggctga tggcaccaac
    15481 tggaaaatcg acaacaaagt ggtccgcgta ccttatgttg gcgtagataa agacaacctg
    15541 gctgaattca gcaagaaata agactgattg ggcgcagtct attactgcgc ccttattgta
    15601 tgaccaacaa ggtaaaatta tatggtcagc tcaacgactc cgtcctccgg ggaatacttg
    15661 ttggaaatga gcggtatcaa caagtccttt cctggtgtta aggcacttga taacgttaat
    15721 ttaaaagtcc ggccacattc tatccatgca ttaatggggg aaaacggcgc aggaaaatca
    15781 acattattaa aatgcttgtt tggtatttat caaaaagact ccggcaccat tttattccag
    15841 ggtaaagaga tcgatttcca ttcggccaaa gaagcactgg aaaatggtat ttcgatggta
    15901 caccaggagt taaacctggt attacaacgt tcggtgatgg acaacatgtg gcttgggcga
    15961 taccccacca aaggcatgtt tgtcgatcag gacaaaatgt accgcgaaac caaagcgatt
    16021 tttgatgaac tggatattga tatcgatccg cgtgcgcgcg tcggcacatt atctgtttcg
    16081 caaatgcaga tgatcgaaat cgccaaagcg ttttcctata acgcgaaaat tgtgattatg
    16141 gatgaaccga cttcttcgtt aaccgaaaaa gaggtcaatc atctgttcac tattattcgt
    16201 aaattaaaag agcgcggctg cggtattgtt tatatctcgc ataaaatgga ggaaatcttc
    16261 cagttatgtg atgaagttac cgtattgcgc gacggtcagt ggatcgccac cgaaccgctg
    16321 gcaggactga cgatggacaa gatcatcgcc atgatggttg ggcgttctct taaccagcgt
    16381 ttccctgaca aagaaaacaa gccgggcgaa gtcatcctcg aggtgcgtaa cctgacgtca
    16441 ctgcgccagc cgtcgatccg tgatgtctcg tttgatctgc ataaagggga gatcctcggt
    16501 attgccgggc tgatgggggc gaaacgtacc gatattgttg agacgttatt tggtattcgc
    16561 gagaaatcgg ccggcaccat tacgttgcac ggcaaaaaga tcaata
//
LOCUS       DAJVUN010000082        16535 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.082, whole genome shotgun sequence.
ACCESSION   DAJVUN010000082 DAJVUN010000000
VERSION     DAJVUN010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16535
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.082"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..351
                     /locus_tag="OQQ76_002276"
                     /pseudo
     CDS             1..351
                     /locus_tag="OQQ76_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
     gene            522..869
                     /locus_tag="OQQ76_002277"
     CDS             522..869
                     /locus_tag="OQQ76_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidH family protein"
                     /protein_id="HCS1968761.1"
                     /translation="MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAP
                     DFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMV
                     VAVIVMGLVLYAG"
     gene            859..1221
                     /locus_tag="OQQ76_002278"
     CDS             859..1221
                     /locus_tag="OQQ76_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HCS1968762.1"
                     /translation="MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWH
                     QAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAI
                     LFAVTHIHQLIVFIERVA"
     gene            1218..1715
                     /locus_tag="OQQ76_002279"
     CDS             1218..1715
                     /locus_tag="OQQ76_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCS1968763.1"
                     /translation="MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLI
                     PYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGGENP
                     QPRRDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMEL
                     MTMLR"
     gene            complement(1723..2907)
                     /gene="emrD"
                     /locus_tag="OQQ76_002280"
     CDS             complement(1723..2907)
                     /gene="emrD"
                     /locus_tag="OQQ76_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418129.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter EmrD"
                     /protein_id="HCS1968764.1"
                     /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA
                     VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA
                     SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN
                     WRACYLFLLVLCVGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIG
                     GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ
                     SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGT
                     AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGWLIVLCWLPLATRMSHQGQ
                     PV"
     gene            complement(3326..3415)
                     /gene="tisB"
                     /locus_tag="OQQ76_002281"
     CDS             complement(3326..3415)
                     /gene="tisB"
                     /locus_tag="OQQ76_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin TisB"
                     /protein_id="HCS1968765.1"
                     /translation="MSLVDIAILILKLIVAALQLLDAVLKYLK"
     gene            3980..4078
                     /gene="ivbL"
                     /locus_tag="OQQ76_002282"
     CDS             3980..4078
                     /gene="ivbL"
                     /locus_tag="OQQ76_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilvB operon leader peptide IvbL"
                     /protein_id="HCS1968766.1"
                     /translation="MTTSMFNAKLLPTALSAAVVVVRVVVVVGNAP"
     gene            4184..5872
                     /gene="ilvB"
                     /locus_tag="OQQ76_002283"
     CDS             4184..5872
                     /gene="ilvB"
                     /locus_tag="OQQ76_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HCS1968767.1"
                     /translation="MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYD
                     ALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDS
                     IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQS
                     GRPGPVWIDIPKDVQTAVFEIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYL
                     GGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEA
                     DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL
                     IPQVEAQPRAEWHQLVADLQREFPCPIPKACDPLSYYGLINAVAACVDDNAIITTDVG
                     QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMN
                     IQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFG
                     LETCDLNNEADPQAALQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE"
     gene            5876..6166
                     /gene="ilvN"
                     /locus_tag="OQQ76_002284"
     CDS             5876..6166
                     /gene="ilvN"
                     /locus_tag="OQQ76_002284"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCS1968768.1"
                     /translation="MQNTTHNNVILELTVRNHPGVMTHVCGLFSRRAFNVEGILCLPI
                     QDSDKSHIWLLVNDDQRLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ"
     gene            6240..6830
                     /gene="uhpA"
                     /locus_tag="OQQ76_002285"
     CDS             6240..6830
                     /gene="uhpA"
                     /locus_tag="OQQ76_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator UhpA"
                     /protein_id="HCS1968769.1"
                     /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP
                     GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR
                     CSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
                     ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW"
     gene            6830..8332
                     /gene="uhpB"
                     /locus_tag="OQQ76_002286"
     CDS             6830..8332
                     /gene="uhpB"
                     /locus_tag="OQQ76_002286"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction histidine-protein
                     kinase/phosphatase UhpB"
                     /protein_id="HCS1968770.1"
                     /translation="MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFP
                     FGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISR
                     YRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWH
                     YLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALP
                     IIALAWHYGWQGALIATLMNAIALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRL
                     RELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA
                     ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRG
                     IVSHLEWQIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIE
                     DDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV"
     gene            8342..9661
                     /gene="uhpC"
                     /locus_tag="OQQ76_002287"
     CDS             8342..9661
                     /gene="uhpC"
                     /locus_tag="OQQ76_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418123.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter family glucose-6-phosphate
                     receptor UhpC"
                     /protein_id="HCS1968771.1"
                     /translation="MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYF
                     TRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL
                     IATGIINILFGFSTSLWAFAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWN
                     TAHNVGGALIPIVMAAVALHYGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVG
                     EWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLY
                     MSETLGVDLVTANTAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG
                     SLWLMPFASYVMQATCFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG
                     ASLAGWPLAKVLDTWHWSGFFVVISIAAGISALLLLPFLNAQTPREA"
     gene            9799..11190
                     /gene="uhpT"
                     /locus_tag="OQQ76_002288"
     CDS             9799..11190
                     /gene="uhpT"
                     /locus_tag="OQQ76_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HCS1968772.1"
                     /translation="MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYL
                     IRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML
                     ILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF
                     LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPE
                     SYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRI
                     GIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIAL
                     ALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG
                     TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERK
                     IRREKKIQQLTVA"
     gene            complement(11235..13001)
                     /gene="adeD"
                     /locus_tag="OQQ76_002289"
     CDS             complement(11235..13001)
                     /gene="adeD"
                     /locus_tag="OQQ76_002289"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HCS1968773.1"
                     /translation="MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLIN
                     GGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVT
                     FETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD
                     VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGL
                     GGKELNAYITAGIENCHESYQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNS
                     PQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGL
                     LAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQP
                     VSASDFALQFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRL
                     APACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVYQVIQDGGGLCVVRNG
                     QVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPAL
                     KLTSQGLFDGEKFAFTTLEVTE"
     gene            13176..14510
                     /gene="adeQ"
                     /locus_tag="OQQ76_002290"
                     /gene_synonym="yicO"
     CDS             13176..14510
                     /gene="adeQ"
                     /locus_tag="OQQ76_002290"
                     /gene_synonym="yicO"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeQ"
                     /protein_id="HCS1968774.1"
                     /translation="MNNDNTDYVSNESGTLSRLFKLPQHGTTVRTELIAGMTTFLTMV
                     YIVFVNPQILGAAQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFV
                     VVGAMGISWQTGMGAIFWGAVGLFLLTLFRIRYWMISNIPLSLRIGITSGIGLFIALM
                     GLKNTGVIVANKDTLVMIGDLSSHGVLLGILGFFIITVLSSRHFHAAVLVSIVVTSCC
                     GLFFGDVHFSGVYSIPPDISGVIGEVDLSGALTLELAGIIFSFMLINLFDSSGTLIGV
                     TDKAGLIDGNGKFPNMNKALYVDSVSSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTA
                     VVVGVMFLLVMFFSPLVAMVPPYATAGALIFVGVLMTSSLARVNWDDFTESVPAFITT
                     VMMPFTFSITEGIALGFMSYCIMKVCTGRWRDLNLCVVVVAALFALKIILVD"
     gene            14563..15015
                     /locus_tag="OQQ76_002291"
     CDS             14563..15015
                     /locus_tag="OQQ76_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1198 domain-containing protein"
                     /protein_id="HCS1968775.1"
                     /translation="MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVES
                     MVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKAR
                     LAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH"
     gene            15225..16415
                     /gene="nepI"
                     /locus_tag="OQQ76_002292"
     CDS             15225..16415
                     /gene="nepI"
                     /locus_tag="OQQ76_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418118.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine ribonucleoside efflux pump NepI"
                     /protein_id="HCS1968776.1"
                     /translation="MSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLT
                     PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRCYVVILFAVLLTLSCLLV
                     SFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVAPRTVPKALSVIFGAVSIALVIA
                     APLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGV
                     MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFIL
                     KRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL
                     ADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLVTAKVK
                     MKKS"
BASE COUNT         3589 a         4201 c         4604 g         4141 t
ORIGIN      
        1 tcagcctgcc ggggcgcaat gtccgggcaa aatcaggttt aaaccgttcg atactggatc
       61 agggctggta tgaaatgcgc cgccagcttg agtacaagca gctctggagt ggcggtcagg
      121 tgcttgctgt tccgccagcg ttgcgcgtgc tgtggtcata cagcgaaaga aaatcgcctg
      181 tcacaaagta aattcagatg ccaggtatgt ggatatacag cgaacgccga tgtaaatggc
      241 gctcgtaaca ttttagcggc ggggcacgcc gttcttgcct gtggagagat ggtgcagtca
      301 ggccgcccgt tgaagcagga acccaccgaa atgattcagg cgacagcctg aacgtagcag
      361 ggatcctcgt ccttcagggc gtggaggatg tcaatttgcg ctatgatacc catctgacct
      421 ccttgtagcg gatggcaaaa gcatatcagg aaacgggcgg acgaaattct taaaaaaaac
      481 cgctaaagat agagcgttag tgaaattgca aaggagcaac aatgaaaatt tcccgccttg
      541 gagaagcgcc cgattaccgc ttctcgctgg ctaatgagcg tacttttctg gcgtggatcc
      601 gtaccgcact aggatttctg gcggcggggg ttgggcttga tcaacttgcg ccagatttcg
      661 ccacgcccgt cattcgtgaa ctgctggcgt tgttgttgtg tctgttttcc ggcgggttag
      721 caatgtatgg ctacctgcgc tggttacgca atgaaaaagc gatgcgtctg aaagaggacc
      781 tgccctacac caacagctta ttaatcatta gcttaatatt gatggtcgtg gcggtgatcg
      841 ttatgggact ggtgttgtat gccggatagc cgcaaagcca gacgcattgc cgacccagga
      901 ctgcagccgg agcgcacatc actggcgtgg tttcgtacca tgctgggcta cggcgcgttg
      961 atggcgttgg ctatcaaaca caactggcac caggcgggca tgttattctg gatttcgatt
     1021 ggcattctcg ccatcgtggc gctgatcctc tggcactaca cccgtaatcg caatttaatg
     1081 gatgtcacga atagcgattt ttcccaattt cacgtagtcc gtgacaaatt tttgatctcc
     1141 ctcgcggtgt tatctctcgc aatactgttt gctgtaacgc atatacatca acttatcgta
     1201 tttattgaga gagtcgcatg acaggaagtc aggtcattga tgctgaagag gacaggcata
     1261 aactggttgt agagtacaag gatgctctgc aacctgccga tttttatcac aatttcaaac
     1321 agcggggcat ccgctccgta cagctcattc cctatcttga atttgatgac cggggcgatc
     1381 tgacggccgc ttcggtgaca gcagagctgt gggggaaatt tttaattgcc ctgttcgagt
     1441 gttgggtgcg ggcagatatc agtcgtatct cgattgagct ttttgacgcc accttacaaa
     1501 aatggtgtgg cggcgaaaac ccgcaaccgc gccgtgactg ccaggcgtgc gactggcatc
     1561 gcctgtgccc gcacgctcgg caggagacgc cagacagcgt gctttgtgcg ggctatcagg
     1621 cgttttattc ttactccgca ccgcatatgc gggtgatgcg tgatctgata aagcagcatc
     1681 gttctcccat ggagctgatg acgatgctgc ggtgacgtgc gcttaaacgg gctgcccctg
     1741 atgcgacatc cgcgtcgcca gcggcagcca gcacagcacg atcaaccatc ccattaaggt
     1801 catcaataac cccaggctac cctgaccggt ttgcggcaac atcgcagaga gcgacgccag
     1861 cacgccggaa ccaatgtttt gcagaccgcc gaccagcgcg ccagccgtgc ccgccaggaa
     1921 ggggaacggc tccatcgcgc cgctggtcgc cagcggaaac agcatcccgg caccgaaaaa
     1981 gaacagcgcg gcgggaacga gcagcgtcca gacattcatc acgccaaacc agtcggggat
     2041 ccacatcagc aagccagcca gcaggcagca gataaccgac tgccacatta acgtggagaa
     2101 gcgtttattg ggacgtccgg caaaccatgc gccaaaaaac gctgccggaa tcggcagaat
     2161 aaacaaaata ctgaccgtca tactgctcag ccctaacacc gcgcccatca gcacgccgga
     2221 gcaggcttca aaggcggcaa tcccggccag accgccaatc agcatcagca aataacagtt
     2281 aaaaccgctg ttaccgaaaa gcgttttata actggtaagc aggcgcgtgc gcggtgcatc
     2341 gaccggacgc gtttccggca tccagcgggc catactgaag gtcacaccaa cacaaagaac
     2401 caacaaaaag agataacagg cgcgccagtt ccacatcgta tccagcagac cgccgattag
     2461 cggtgcgagc aacggactga cgagaatccc catgtttaac aggctgttag catggcgcaa
     2521 ctgtgtccgt tcatataaat ctcgcggcaa agtacgcgcc attacgccgc caacgccggt
     2581 gcccatcccc tgcatcgcgc tggcggcaat caataccgtc aaactggagg tcgtgaccgc
     2641 gaccagcgtt gccagcataa aaatggacat tccgacgagg atcaccggtc ggcgacccac
     2701 acggtcggaa atcgggccat aaaacagctg tgagacaccg taagtcagca gataagcgcc
     2761 cattacgctc tgcaccgccc cttcacggac gttgagatcg cgcgccatat cggcaatagc
     2821 tggaatataa atggtttgcg ccatctgacc gacggccacg agtaatacca acatcaataa
     2881 caaattgacg tttctttgcc ttttcattat cacggatgct tttataaaaa taattagaat
     2941 aagtcactac gcattcccat aaatgcggga gaggaatcta tcacattgat gaatgttagc
     3001 cagatatacg ccaggaatgg ggaattgttt agcggcagaa tatgtaaaca aaagcggcaa
     3061 taaatgttgc cgggagggat tacgtgcgaa ctgtaaccct ctccccaaag gggcgagggg
     3121 gaaaccaccg ttccctttca gaaaatgagc taaacattgc acgggacggt cccctcgccc
     3181 ctttggggag agggctaggg tgaggggcac aggcagcgca ggtgcaaaca ttctgctggt
     3241 agaagaagcc cccaactcca acccgcacgc taaatataaa aggggagcgg ttacccgctc
     3301 ccctttggtg cgacttgaat ctgaattact tcaggtattt cagaacagca tcaagcagtt
     3361 gcagtgctgc aacaatgagt ttgaggataa gaatggcgat atccaccagg ctcatacgcg
     3421 tctcctgtgg ttcaggagca ctgccagctg acgtaccttt ccgctgcctg ttgtcagctg
     3481 ttgtgcacgc ggtatctcaa ggagaaacgt tgtgcttgtt gacataacac agtgtgctca
     3541 cgcggggtta aggcgctgac ggcaccaccc gtttcagcca ggacttagtg cgccgggtaa
     3601 cgatgcggcc cccgtataat acattgcgta cagtgatatt atagaagttt actgtataaa
     3661 taaacagtaa tatttggaca aaacgcaaac tgtgatcgat actcaactat gccctaaata
     3721 cgtcaaaatt cgtgccgaaa ttgcgcgttc tgcgcggaac acgtatactt tcagtgttga
     3781 cataatacag tgtgctttgc ggttaccagc tgcaggcggc tgatgaaacc tcgctccggc
     3841 ggggtttttt gttacctgca attcagtaca aaacgtgatc agcccctcaa ttttcccttg
     3901 ctgaaaaatt ttccattgtc tcccctgtaa agctgtgctt gtataaatat tgttaaacac
     3961 aaaaccaaca aggtccccaa tgactacttc catgttcaac gcaaaactac taccaactgc
     4021 gctatccgcc gcagtggtcg tcgtgcgtgt ggtggtggtc gtcggcaatg cgccgtaggg
     4081 actggaacaa cacacgattc caaaaccccg ccggcgcaaa ccgggcgggg tttttcgttt
     4141 aagcacctcc cggaaagtcg gcccagaaga aaaggactgg agcatggcaa gttcgggcac
     4201 aacatcgacg cgtaagcgct ttaccggcgc agaatttatc gttcatttcc tggaacagca
     4261 gggcattaag attgtgacgg gcattccagg cggttctatc ctgcctgttt acgatgcctt
     4321 aagccaaagc acgcaaatcc gccatattct ggcccgtcat gaacagggcg cgggatttat
     4381 cgctcagggg atggcgcgca ccgacggtaa accggcggtc tgtatggcct gtagcggacc
     4441 gggtgcgact aacctggtga ccgccattgc cgatgcgcgg ctggactcca tcccgctgat
     4501 ttgcatcacc ggtcaggttc ccgcctcgat gatcggcacc gacgccttcc aggaagtgga
     4561 cacctacggc atctctatcc ccatcaccaa acacaactat ctggtcagac atatcgaaga
     4621 actcccgcag gtcatgagcg atgccttccg cattgcgcaa tcaggccgcc caggcccggt
     4681 gtggatagac attcctaagg atgtgcaaac ggcagttttt gagattgaaa cacagcccgc
     4741 tatggcagaa aaagccgccg cccccgcctt tagcgaagaa agcattcgtg acgcagcggc
     4801 gatgattaac gctgccaaac gcccggtgct ttatctgggc ggcggtgtga tcaatgcgcc
     4861 cgcacgggtg cgtgaactgg cggagaaagc gcaactgcct accaccatga ctttaatggc
     4921 gctgggcatg ttgccaaaag cgcatccgtt gtcgctgggt atgctgggga tgcacggtgt
     4981 gcgcagcacc aactatattt tgcaggaggc ggatttgttg atagtgctcg gtgcgcgttt
     5041 tgatgaccgg gcgattggca aaaccgagca gttctgtccg aatgccaaaa ttattcatgt
     5101 cgatatcgat cgcgcagagc tgggtaaaat caagcagccg catgtggcga ttcaggcgga
     5161 tgttgatgac gtgctggcgc aattgatccc gcaggtggaa gcgcaaccgc gtgcagagtg
     5221 gcaccagttg gtagcggatt tgcagcgcga attcccgtgt ccaatcccga aagcgtgcga
     5281 tccattaagc tattacggcc tgatcaacgc cgttgccgcc tgtgtcgatg acaatgcgat
     5341 tatcaccacc gatgtgggtc agcatcagat gtggaccgcg caagcttatc cgctcaatcg
     5401 cccacgccag tggctgacct ccggtgggct gggcacgatg ggttttggcc tgcctgcggc
     5461 gattggcgcg gcgctggcga acccggatcg caaagtgttg tgtttctccg gcgacggcag
     5521 cctgatgatg aatattcagg agatggcgac cgccagtgaa aatcagctgg atgtcaaaat
     5581 cattctgatg aacaacgaag cgctggggct ggtgcatcag caacagagtc tgttctacga
     5641 gcaaggcgtt tttgccgcca cctatccggg caaaatcaac tttatgcaga ttgccgccgg
     5701 attcggcctc gaaacctgtg atttgaataa cgaagccgat ccgcaggctg cattgcagga
     5761 aatcatcaat cgccctggcc cggcgctgat ccatgtgcgc attgatgccg aagaaaaagt
     5821 ttacccgatg gtgccgccag gtgcggcgaa tactgaaatg gtgggggaat aagccatgca
     5881 aaacacaact cataacaacg taattctgga gctcaccgtt cgcaaccatc cgggcgtaat
     5941 gacgcacgtt tgtggccttt tttcccgccg cgcttttaac gttgaaggca ttctttgtct
     6001 gccgattcag gacagcgaca aaagccatat ctggctactg gtcaatgacg accagcgtct
     6061 ggagcagatg ataagccaaa tcgataagct ggaagatgtc gtgaaagtgc agcgtaatca
     6121 gtccgatccg acgatgttta acaagatcgc ggtgtttttt cagtaaccgc tcaaggcttg
     6181 aacaacatcg cgcttatcgt taaggtaagc gcgttttttt tacccgccag gacaagacca
     6241 tgatcaccgt tgcccttata gacgatcacc tcatcgtccg ctccggcttt gcgcagctgc
     6301 tggggctgga acctgatttg caggtagttg ccgagtttgg ttcggggcgc gaggcgctgg
     6361 cggggctgcc ggggcgcggt gtgcaggtgt gtatttgcga tatctccatg cccgatatct
     6421 ccggtctgga gctgctaagc cagctgccga aaggtatggc gacgattatg ctctccgttc
     6481 acgacagtcc tgcgctggtt gagcaggcgc ttaacgcggg ggcacgcggc tttctttcca
     6541 aacgctgtag cccggatgaa ctcattgctg cggtgcatac ggttgccacg ggcggttgtt
     6601 atctgacgcc ggatattgcc attaaactgg catccggtcg tcaggacccg ctaaccaaac
     6661 gtgaacgcca ggtggcggaa aaactggcgc aaggaatggc ggtgaaagag attgccgccg
     6721 aactgggctt gtcaccgaaa acggtacacg tccatcgcgc caatctgatg gaaaaactgg
     6781 gcgtcagtaa cgacgtagag ctggcgcgcc gcatgtttga tggctggtga tgaagacgtt
     6841 gttctcccgc ttaattaccg ttattgcctg cttttttatc ttctctgccg catggttttg
     6901 cctgtggagt atcagcctgc atctggttga gcgccctgat atggcggtgc tgttatttcc
     6961 gtttggtctg cgtctggggc taatgctgca atgcccgcgc ggatactggc cggtgctgct
     7021 gggcgcggag tggctgctga tttactggct aacgcaggcg gtcggtttaa cccattttcc
     7081 gttattgatg atcggtagtt tactgacgtt actgcccgta gcgctgatct cgcgctatcg
     7141 ccatcagcgt gactggcgca ccttgctgtt acagggggcg gcgttaacgg cggcggcgtt
     7201 gttgcagtcg ctgccctggc tttggcacgg caaagagtcg tggaatgcgc tgttgctgac
     7261 tttaactggc ggcctgacgc tggccccgat atgtctggtg ttctggcact atctcgccaa
     7321 taacacctgg ctgccgctcg gcccgtcact ggtttctcag ccaatcaact ggcgcgggcg
     7381 acatctggtc tggtacttgc tgctgtttgt tatcagtctc tggctccagt tgggattgcc
     7441 ggacgaactg tcgcgcttta cgccattctg tctggcgctg ccgattatcg cgctggcctg
     7501 gcactatggt tggcaagggg cgctgattgc gacgttgatg aacgccatcg cgctgatcgc
     7561 cagtcaaacc tggcgcgatc atccggtgga tttattgctc tcgctgctgg tgcaaagtct
     7621 gacagggttg ttgcttggcg ctggcatcca gcggttgcgt gaacttaacc agtcgctgca
     7681 aaaggaactg gcgcgcaatc agcatctggc tgaacggttg ctggaaaccg aagagagcgt
     7741 gcgccgtgat gtggcgcgtg agctgcatga tgatatcggt cagaccatca ctgctattcg
     7801 tactcaggcg ggcattgttc agcggctggc ggcagataac gccagcgtga agcagagcgg
     7861 gcagctcatc gaacaactat cgctgggcgt ttacgacgcg gtgcgccgtt tgttgggtcg
     7921 gttacgtccg cgccagttgg atgatctcac cctggagcag gccatccgct cactgatgcg
     7981 ggaaatggag ctggaagggc gcggtattgt cagccatctc gaatggcaaa tcgatgaatc
     8041 agcgttaagc gaaaaccagc gcgtgacgct gtttcgtgtc tgccaggaag ggctgaacaa
     8101 cattgtgaaa catgctgatg ccagcgcggt caccctgcaa ggctggcagc aggatgaacg
     8161 gttgatgctg gttattgaag acgatggcag cggtttgccg ccgggttccg ggcaacaagg
     8221 ttttggcctc accggaatgc gcgagcgcgt aacggcgctg ggtggcacat tacacatttc
     8281 ctgtctgcac ggcacgcgtg tcagcgtttc tctacctcaa cgctatgtct aaggtttgat
     8341 gatgttgccg tttctgaaag cgcctgccga tgcgccatta atgactgata aatatgaaat
     8401 tgatgcccgc tatcgctact ggcgtcggca tattctgctg accatctggc tgggttacgc
     8461 gctgttttac ttcacgcgga aaagttttaa cgccgccgta ccagaaatcc ttgctaacgg
     8521 cgtgctcagc cgtagcgata tcggcctgtt agcgaccctg ttttacatta cctatggcgt
     8581 gtcgaagttt gtctccggca ttgtcagcga tcgctcaaat gcccgttatt ttatggggat
     8641 agggcttatc gccacgggca ttatcaacat tctgtttggc ttctcgacgt cgctatgggc
     8701 gtttgccgta ctctgggtgc tgaacgcctt tttccagggc tggggttcac cggtgtgtgc
     8761 gcgtctgtta acggcctggt attcacgtac cgagcgcggt ggttggtggg cattatggaa
     8821 cacggcgcat aacgtcggcg gcgcactcat tcccattgtg atggcagcgg ttgcactaca
     8881 ttacggctgg cgtgccggga tgatgattgc tggttgtatg gcgatcgtcg tgggaatttt
     8941 tctctgctgg cggctgcgcg atcgcccgca ggcgttaggt ttaccggcgg tcggtgaatg
     9001 gcgacacgac gcgctggaga tagctcaaca acaagaaggg gcagggctga cgcgtaaaga
     9061 gatcctcacc aaatatgtgt tgctgaatcc gtatatctgg ctgctttcgt tttgctatgt
     9121 gctggtctat gtggtccggg cggcgatcaa cgactggggc aatttgtata tgtccgagac
     9181 gctgggcgtc gatctggtca cggcgaatac ggcagtgacg atgtttgaac tgggtggatt
     9241 tatcggtgcg ctggtagcgg gttggggctc ggacaaattg tttaacggca accgagggcc
     9301 gatgaatttg attttcgccg ccggaatttt gctttcagtc ggctccctgt ggctgatgcc
     9361 atttgccagc tacgtgatgc aggcaacctg cttcttcacc attggttttt ttgtctttgg
     9421 cccacagatg ttaatcggta tggcggcggc agagtgttcc cacaaagagg cggcaggggc
     9481 ggcgacgggg tttgtcggct tgtttgctta tctgggggcg tcgcttgctg gttggccgct
     9541 ggcgaaagta ctcgatacct ggcactggag cggatttttt gtggttatct ctatcgccgc
     9601 cgggatttcc gcactgctgt tactgccctt tttgaacgcc cagacaccgc gcgaagcgtg
     9661 atgcatctca ccttttcact tcatatccgg caaaactaag aaattttcca ggttttgcct
     9721 ggacgctatc tcaggcctga tttgctgctg atttttacaa tgcatgcctc acgcaggtat
     9781 tcatttcagg agtaacccat gctggctttc ctaaaccagg ttcgcaagcc gaccctggac
     9841 cttccgctcg aagtgcggcg caaaatgtgg ttcaaaccgt tcatgcaatc ctacctggtg
     9901 gtctttatcg gctacctgac gatgtacctg attcgcaaga actttaacat cgcgcagaac
     9961 gatatgattt cgacctacgg gttgagcatg acgcagctgg ggatgatcgg cctgggtttc
    10021 tccatcactt atggcgtggg taaaacgttg gtttcatact acgccgacgg caaaaacacc
    10081 aaacaattcc tgccgttcat gctgatcctg tctgccattt gtatgctggg cttcagtgcc
    10141 agtatgggca gcggctcggt tagcctgttc ctgatgattg ccttctacgc cttaagcggc
    10201 tttttccaga gtaccggcgg ttcgtgcagt tactccacca tcaccaaatg gacgccgcgt
    10261 cgtaaacgcg ggacattcct cggtttctgg aatatttctc acaaccttgg cggtgcaggc
    10321 gcagcaggtg tggcgctgtt cggggcaaat tacctgttcg atggccatgt catcggcatg
    10381 tttatcttcc cgtcgattat cgcgctgatt gtcggtttta tcggcctgcg ttacggcagc
    10441 gactccccag aatcttatgg cctcggcaaa gctgaagaac tgttcggcga ggagatcagc
    10501 gaagaggaca aagagacaga atctaccgat atgaccaagt ggcagatctt tgttgagtat
    10561 gtgctgaaaa acaaagtgat ctggctgctg tgcttcgcca acattttcct ctatgtggta
    10621 cgtattggta tcgaccagtg gtcaaccgta tacgcgttcc aggaactgaa actctctaaa
    10681 gcggtggcga ttcagggctt tacgctgttt gaagctggtg cgctggtcgg tacgctgctg
    10741 tggggctggc tctctgacct ggcgaacggt cgccgtggcc tggtggcctg catcgcgctg
    10801 gcgctgatta tcgccacgct cggtgtgtat caacatgcca gcaacgaata tatctatctg
    10861 gcttctctct ttgcgttggg tttcctggtc tttggcccgc aattgttgat tggtgtggct
    10921 gctgttggct ttgtacctaa aaaagcgatt ggcgctgccg atggtattaa aggcaccttt
    10981 gcttacctga ttggtgacag ctttgccaag ttaggtctgg gaatgattgc cgatgggacg
    11041 ccggtattcg gccttaccgg ctgggcaggc accttcgccg cacttgatat cgccgcgatt
    11101 ggttgtatct gcctgatggc gatagtggcg gtgatggaag aacgcaaaat ccgccgcgag
    11161 aaaaaaattc agcagttgac agtggcataa acgtaactgg tgacttttgc ccggcatgac
    11221 gccgggcttt tttattattc cgtgacttcc agcgtagtga aggcaaactt ctcgccatca
    11281 aatagcccct gactggttag ttttagcgcg gggatcactg gcagagaaag aaacgccatc
    11341 tgaataaacg gctcatcggg taacggaccg cattcacggg cggcggcttt caaggcgtca
    11401 atttgttccg ccagcgactg cgccgtgtcg gtgctcatca ggccggcaat gggcaacggc
    11461 agatgacttt ggacctggcc gttacgtacc acgcacagcc cgccgccatc ctgaatcacc
    11521 tgatagaccg ccagcgccat ctcttcggca ctgcgaccga tcaccacaat attatggctg
    11581 tcatggctga ccgtcgcagc cagcgcacct tcattcagtc caaagccgcc aagcaaacca
    11641 caagccggag ccagccgttg cccgtaacgc tcaagtacgg caataaagca cacatcatcg
    11701 cgatcaaaac cattttcgct gtagacgctg gagtgggagt gcgtaatcaa ttcgttatgg
    11761 atgacgtcaa tgacccgata gcgttttccg ggcgtaaatt gcagggcaaa gtcgctggcg
    11821 gaaactggct ggcgggcaat ggtgttgcca tatggcggag cggattgtgc cagtctcgcc
    11881 gactcttccg cctgtaaggt ttgcgcatca atcggctcgc ctttcaccag tacctgctgc
    11941 accgtgacct tacgcgcatc gctcaacagg acgatatcgg cctgcttgcc gggtgccagt
    12001 aagccgaggt gattcagacc aaagtggcgc gccgtcgacc agctggcgac gcgatatgcc
    12061 acatgcagcg gcacattgtg ttgttcgatc aggcggcgaa ttaaggcatc gatgtgtcct
    12121 tcatgggcga tctcccacgg gttacggtca tcggtacaga gcatgcattg cgggctgtta
    12181 aattcgttga tcaacggtgc cagcgcgttg agattgcggg cagcggaccc ttcgcggatc
    12241 atcaacgaca tgccgagttg taatttccgg cgtccttctt ccagctgata actttcgtgg
    12301 cagttttcaa tacccgcagt aatataggcg ttaagttctt taccacccaa acccgggcag
    12361 tgaccgtcca gcgtcaggtg gcgaaatgca tccagtttat cgagcagcgc attctgcccg
    12421 ctaattacgc cagggtagtc catcatttct gcaaggccgg taacctgcgg atggtcccgc
    12481 caggcgagca tctgttcaag ggtaaaactg gcaccgttaa catcgcagcc ttccagggcg
    12541 ggtacgcaag agctgacctg taagtactgg ttttgccttg cctgttcggc acagcgggca
    12601 aaccaggcga atccggcttc tcccatcacg ttgacgattt catgagggtc gcaaataacg
    12661 gtcgtcaggc cgcgcggcag ggtagcggtt tcaaaggtga ccggcgtcat catgctggat
    12721 tcaatatgca ggtgagcatc aataaaccct ggcaccgccg ttgcgccgcg agcatcaatc
    12781 cgctgcaaag ccggagcatc agcgtattct gcgccaacac cggcaatgta acgtccttta
    12841 atcacaattg ggccggaaat ttctccgcca ttgatcaggt cgagaataga gacattatca
    12901 ataatataat cggcaacagc gtcgccacgg gaaacggcta acaattcctg gtattcagcc
    12961 cggctaatgt gatgaaattt atggttaatg gaattattca tatttttctc attttgattt
    13021 tatcaatttg attattattt atcataaaga aacgtcgcga gattattaaa gaatatctat
    13081 taatgtgcaa ttgaaatgtg ataattatca ctgaaccgtt gttgtcattt gttttacaaa
    13141 agcaagggat taaatctcct ccaatggaca aaaaaatgaa taatgacaat accgattacg
    13201 tgagtaatga atcagggacg ctttcgcgat tatttaaact acctcagcat gggaccaccg
    13261 tccgcacaga attgattgcg gggatgacca cttttttaac catggtgtac atcgtttttg
    13321 tgaacccgca aatcctcggc gcggcacaaa tggacccgaa agtggtgttt gttaccacct
    13381 gtttgattgc cggtatcggc agtattgcga tggggatatt tgctaactta cccgtggcgc
    13441 tggctccggc aatggggctg aacgccttct ttgccttcgt ggtcgtgggg gcgatgggca
    13501 tctcctggca gaccgggatg ggcgcaatat tctggggcgc agttggacta tttttgctca
    13561 cgctgtttcg tatccggtac tggatgatct ccaacattcc cttaagttta cgtattggta
    13621 tcaccagcgg aattggatta tttatcgcct taatgggatt aaaaaatact ggcgttattg
    13681 tcgccaataa agacacgctg gtgatgattg gcgatttaag ttctcacggc gtgttgttag
    13741 gtattttagg gttttttatt ataaccgtgt tgtcatcacg tcattttcat gccgcggtgc
    13801 tggtttctat tgtggtgacg tcttgctgtg gattattttt cggtgatgtt cattttagcg
    13861 gcgtctattc cattccgcct gatattagcg gcgtcattgg tgaagtagat ttgagcggcg
    13921 cgttaacact tgaactcgcc ggtatcattt tctcctttat gctgatcaac ctatttgatt
    13981 catcaggaac attaattggt gtaactgata aagcgggctt aatagatggt aacggtaaat
    14041 tccccaatat gaataaggcg ctgtatgttg atagcgtcag ttcggtggcg ggtgcgttta
    14101 tcggcacctc gtctgttact gcctatattg aaagtacttc tggtgtggca gtcggtggcc
    14161 gcacggggct gactgcggtt gtggttggcg ttatgttcct gttggttatg ttcttctcac
    14221 cgctggtggc gatggttcct ccttacgcaa ccgccggagc gttaatcttt gttggcgtgc
    14281 tgatgacttc gagcctggcg cgcgttaact gggatgattt taccgaatcg gtgcctgcgt
    14341 ttattaccac ggtgatgatg ccctttactt tctcgatcac cgaagggatt gcactcggct
    14401 ttatgtcgta ctgcatcatg aaagtgtgca ccgggcgctg gcgcgatctg aacctgtgtg
    14461 tggtggtggt cgcagctctg tttgcactga agattattct ggtggattag taactggcga
    14521 gggtttccag atatcatgag ttctgattac gcaggagaac tcatgatctg gataatgctc
    14581 gccacgctgg cggtagtgtt tgtggttggt tttcgggtgc tgacatccgg ggccagaaaa
    14641 gcgattcgcc gtctcagtga tcggctgaat atcgatgtcg tacccgtgga gtcgatggtc
    14701 gatcaaatgg gaaagtcagc cggtgacgaa tttttacgtt atttgcatcg cccggatgag
    14761 tcgcacctgc aaaacgccgc gcaggtgttg ctcatctggc aaattgtcat tgtcgatggt
    14821 agcgaacaga acctgctgca atggcatcgg attttacaaa aagcccgtct tgccgcgccg
    14881 attaccgatg ctcaggtcag gctggcgctg ggttttctgc gcgaaaccga acctgaaatg
    14941 caggatatta atgcttttca gatgcgctat aacgcgttct ttcagcctgc cgagggcgtt
    15001 cactggctgc attaaaaccg cttcgtctta tcagcctaca gaccgcgcct gacctgtcgg
    15061 gtggataaga cgttcacgcc gcatccggta atctttgccc tgttccgttt cgatcttaac
    15121 tccagctcaa gcaacaccgt aaagttgcaa aaacgttaaa tgcgtcacac atttcaatgt
    15181 taaagtggtc ggcttttccc ctgaaacatg ccacgggtaa caccatgagt gaatttattg
    15241 ccgaaaaccg cggcgcggat gccatcaccc gaccgaactg gtcagccgtt ttctcggtgg
    15301 cgttttgtgt cgcctgtctg attatcgttg agtttttgcc cgtcagtttg ttgacgccaa
    15361 tggcccagga tttaggcatt tcggaagggg ttgccgggca atcggtgacc gtgaccgcct
    15421 ttgtggcaat gtttgccagt ttgtttatta cccagacaat tcaggctact gaccgctgct
    15481 acgttgttat tttgtttgcc gttttgctga cgctctcctg cttgctggtt tcctttgcta
    15541 actcattcag tttgctttta atcggtcgtg cctgtctggg gctggcgctg ggcgggttct
    15601 gggcgatgtc ggcgtcgctg accatgcgtc tggtggcgcc gcgtacggtg ccgaaggcgc
    15661 tgtcggtgat cttcggcgcg gtttctattg cgctggtgat tgccgcgccg ttgggcagtt
    15721 ttttaggcga gcttatcggt tggcgcaatg tctttaatgc ggcggcggtg atgggcgtgc
    15781 tgtgtatttt ctggattatc aaatcattgc cttcactgcc aggcgaaccc tcgcatcaga
    15841 aacaaaatac tttccgctta ttacaacgtc cgggtgtgat ggcagggatg atcgccatct
    15901 tcatgtcttt cgccgggcag tttgctttct tcacgtatat tcgcccggtg tatatgaacc
    15961 tggcgggatt cggcgtggat ggcttaacgc tggtgctgtt gagttttggt atcgccagct
    16021 ttattggtac gtcgctttcg tcgttcattc ttaaacgttc ggtaaaactg gccttagcag
    16081 gcgcgccgtt aatactggct gtgagtgcgt tggtactgac gttgtgggga agcgataaaa
    16141 tcgttgctac cggcgtggcg attatctggg ggctaacttt tgcattggtt cccgtcggct
    16201 ggtcaacgtg gatcacccgc tcgctggccg atcaggcaga aaaagccggg tctattcagg
    16261 tggcggttat tcagcttgct aatacctgtg gcgcggcaat cggcggttat gcgctggata
    16321 atattggtct gacttcgccg ttgatgttgt ccggcacatt gatgttgctg actgcattgt
    16381 tggttactgc aaaggtgaaa atgaagaaat cctgatatca ggtaaagaag cgttggtcag
    16441 tagttgttgc tgttcttaca tatccgggca ttctacctta cccaacgctt cccaataatt
    16501 gctctgatta ttacgttcca tcgccacgat ggcct
//
LOCUS       DAJVUN010000083        16395 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.083, whole genome shotgun sequence.
ACCESSION   DAJVUN010000083 DAJVUN010000000
VERSION     DAJVUN010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16395
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.083"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..2045)
                     /locus_tag="OQQ76_002293"
     CDS             complement(<1..2045)
                     /locus_tag="OQQ76_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HCS1968777.1"
                     /translation="MSQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVNYPLWQTDA
                     LVVGSGAARLRAAVELKRRQQNVLIATAGLYMGTSACSGSDKQTLFTAATAGNGDNFT
                     KLAEALASGGAMDHDTAYVEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGR
                     ATSCGPRTSRLMVKVLLEEVQRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHR
                     AHNPWGLAIVTAPNVVLATGGPGELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFG
                     IGTPRSTFPWNLSGTYVQVIPYIYSVDAEGNEYNFLADYYRTTQELASNIFRKGYQWP
                     FHATRVMDFGSSLLDMAVAQEQQSGRQVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYL
                     ENNDALAPSPIERLQRMNPLSISLYKMHGYDLTTQPLQFAMNNQHMNGGIEVDIWGQT
                     SLPGCFAVGEVAGTHGVTRPGGAALNAGQVFAVRLARFIGCTQKRSVEGDVAQLVASS
                     LNIVREVIAQALANEKGMALVTVKDKIQARMSDYAGFICHADKVRHATRDALLLSEFV
                     QQHGLTINHAGEIAELFMWRHMTLTSAAVLTQLTHYIDAGGGSRGARMVIDPQGKCLP
                     QTRRGAKEEWRFRSERAEDKNHRLTIQYSQGSFITEVKSLRMQPCINGIYFEKNWPD"
     gene            complement(2042..3583)
                     /locus_tag="OQQ76_002294"
     CDS             complement(2042..3583)
                     /locus_tag="OQQ76_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS1968778.1"
                     /translation="MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFL
                     QTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEA
                     YCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGE
                     TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDV
                     LEAGAIEPRRVKLPGILVDGIVEHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHP
                     VRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLWLSVEQGVHNGMMLD
                     DAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGG
                     FLEIAQNARKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQ
                     SGQEVLYITERAVFQLTAEGVELIEIAPGVEIERDILPYMAFRPIIKHPRLMESSLFT
                     PMEDA"
     gene            complement(3593..4369)
                     /locus_tag="OQQ76_002295"
     CDS             complement(3593..4369)
                     /locus_tag="OQQ76_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HCS1968779.1"
                     /translation="MSDQPVLFSRVAASCRLTLNREDKCHAINEEVIESLDHYLNEIE
                     NDTTLRLVELTATGDKFFCAGGDIKSWSAYSPLDMGRKWIKRGNDVFNRLRNIPQLTV
                     ANLNGHTIGGGIELALCCDIRIARPGAKFSNPEVMLGMVPGWMGIERVLNQVGPVVGR
                     QMLMLGKRLTAQEAQAANLIDEVVEKEQVESWMANQLAQLEKCGPVALAHIKQLILAL
                     ENKHADYPHQLLAGLMSATQDCQQATRAFAEKSSVSFHNQ"
     gene            complement(4379..5221)
                     /locus_tag="OQQ76_002296"
     CDS             complement(4379..5221)
                     /locus_tag="OQQ76_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HCS1968780.1"
                     /translation="MRDLLQRPDLFSINTATLGYKTPLPAIIDACAARGIGAIAPWRR
                     ELQGEDLQQITRQLAASNMSVSGLCRSTYYTAPTLAERKLAIDDNRRALDDAAVLNAA
                     CYMQVVGGLPTGTKDLYEAREQVKQGIRQLLPHSKDVGVPIALEPLHPMTAADRSCLC
                     TLRQALDWCDELDPDGEFGLGVAVDVYHVWWDPDLASQILRAGKRILAFHVSDWLVPT
                     TDLVNDRGMPGDGVINIPSIRRLVENAGFNGAIELEIFSPYWWQKDINSTLDISVDRI
                     AHYC"
     gene            complement(5231..6022)
                     /locus_tag="OQQ76_002297"
     CDS             complement(5231..6022)
                     /locus_tag="OQQ76_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709993.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HCS1968781.1"
                     /translation="MKSTRPVAVITGAARGIGKGCAQELARGGFNLLINDRPDADSVE
                     KLHITQQECLAEGVEVICFPADVGDLSLHEEMLDAAQNQWGRLECLLNNAGISVKKRG
                     DLLDLEPDSFDQNIAINTRAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIML
                     AMNRGEYTIAKTAVSAAARLFAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAK
                     GLVPWGRWGYPADIASTVRAMAEGKLIYTCGQAVAIDGGLSMPRF"
     gene            6234..6881
                     /locus_tag="OQQ76_002298"
     CDS             6234..6881
                     /locus_tag="OQQ76_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709992.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HCS1968782.1"
                     /translation="MYLDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSK
                     QTVYHHFGNKENLFIEVLEYTWNDIRQKEKALDFSDLLPQKAIEKIIDFTWDYYIANP
                     WFLKIVHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNI
                     NIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE"
     gene            complement(6865..7516)
                     /gene="ytfB"
                     /locus_tag="OQQ76_002299"
                     /pseudo
     CDS             complement(6865..7516)
                     /gene="ytfB"
                     /locus_tag="OQQ76_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418627.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YtfB"
     gene            7735..8355
                     /gene="fklB"
                     /locus_tag="OQQ76_002300"
     CDS             7735..8355
                     /gene="fklB"
                     /locus_tag="OQQ76_002300"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015742582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1968783.1"
                     /translation="MTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIAD
                     ALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTES
                     GLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE
                     ALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL"
     gene            8664..10076
                     /gene="cycA"
                     /locus_tag="OQQ76_002301"
                     /gene_synonym="dagA"
     CDS             8664..10076
                     /gene="cycA"
                     /locus_tag="OQQ76_002301"
                     /gene_synonym="dagA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine/D-alanine/glycine transporter"
                     /protein_id="HCS1968784.1"
                     /translation="MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMG
                     SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF
                     TGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
                     EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGF
                     QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV
                     VPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA
                     FAKLSKRAVPAKGLTFSCICLLGGVVMQYVNPSVIGAFTMITTVSAILFMFVWTIILC
                     SYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWF
                     IALGLGWLFIGKKRAAELRK"
     gene            complement(10121..10783)
                     /gene="ytfE"
                     /locus_tag="OQQ76_002302"
     CDS             complement(10121..10783)
                     /gene="ytfE"
                     /locus_tag="OQQ76_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein YtfE"
                     /protein_id="HCS1968785.1"
                     /translation="MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARK
                     ELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE
                     RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
                     DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALA
                     GE"
     gene            complement(10891..11856)
                     /locus_tag="OQQ76_002303"
     CDS             complement(10891..11856)
                     /locus_tag="OQQ76_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1968786.1"
                     /translation="MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLI
                     ALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLP
                     VVIPVFANLLYSQRDGKLVWGKLAPALVCIGIGLACVNIAELNHGLPDFDWARYTSGI
                     VLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQ
                     TPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGL
                     LYTFLIRQQMPPLMTLSGIALLVVGVVIAVRAKPEKPLTESVSES"
     gene            complement(11964..12824)
                     /gene="qorB"
                     /locus_tag="OQQ76_002304"
     CDS             complement(11964..12824)
                     /gene="qorB"
                     /locus_tag="OQQ76_002304"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HCS1968787.1"
                     /translation="MIAITGATGQLGHYIIESLMKTVPASQIVAIVRNPAKAQALAAQ
                     GITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVRFIAYT
                     SLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGA
                     AGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVT
                     YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDNSKTLSKLIGRPTTTLAE
                     SVSHLFNVNN"
     gene            12913..13293
                     /locus_tag="OQQ76_002305"
     CDS             12913..13293
                     /locus_tag="OQQ76_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HCS1968788.1"
                     /translation="MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREG
                     THRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEK
                     VAALADWIELNLPEVLAVRDERAA"
     gene            complement(13422..15365)
                     /gene="cpdB"
                     /locus_tag="OQQ76_002306"
     CDS             complement(13422..15365)
                     /gene="cpdB"
                     /locus_tag="OQQ76_002306"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HCS1968789.1"
                     /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD
                     TATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDVHPVYK
                     ALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDT
                     EVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGAD
                     VVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEEADIT
                     KGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAED
                     SKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQ
                     GDPDLAKLPVLSAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKAS
                     GKEVKEWLECSAGQFNQIDPNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYD
                     GECQMINANAERIKNLTFNGKPIDPNAMFLVATNNYRAYGGKFAGTGDSHIAFASPDE
                     NRSVLAARIADESKRAGEIHPAADNNWRLAPIAGDKKLDIRFETSPSDKAAAFIKEKG
                     QYPMNKVATDDIGFAIYQVDLSK"
     gene            15555..16295
                     /gene="cysQ"
                     /locus_tag="OQQ76_002307"
     CDS             15555..16295
                     /gene="cysQ"
                     /locus_tag="OQQ76_002307"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HCS1968790.1"
                     /translation="MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAA
                     HTVIMDGLRTLTPDIPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI
                     ALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHAD
                     AELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGA
                     HVHDWQGKPLDYTPRESFLNPGFRVSIY"
BASE COUNT         3849 a         4245 c         4196 g         4105 t
ORIGIN      
        1 aagtctggcc agtttttttc aaagtaaata ccgttaatac acggttgcat acgtaaagac
       61 ttcacttcgg taataaaaga accttgcgaa tattgaatcg ttaatctgtg atttttgtct
      121 tcagcacgtt cagagcgaaa acgccattct tcttttgcgc cgcgacgagt ttgtgggagg
      181 catttgcctt gtggatcaat aaccatccgt gctccacgac tgccaccacc tgcgtcaata
      241 taatgcgtca attgcgttaa tacggcggca gaagtcagcg tcatatgccg ccacataaac
      301 agttcggcaa tttcgcctgc gtgattgatg gttaaaccgt gttgttgtac aaactcactt
      361 agcagcaggg cgtcacgggt ggcatgacga actttatcgg catgacaaat aaatccggcg
      421 taatcagaca ttcgcgcctg gattttgtct ttcaccgtta ccagcgccat tcctttctcg
      481 tttgccagtg cctgagcgat aacttctctg actatattca gagatgaggc taccagctgc
      541 gcgacatcac cctcaacaga ccgcttttgc gtgcaaccaa taaaacgtgc cagacgaaca
      601 gcaaaaacct gcccggcatt caatgctgca ccacctgggc gagtgacgcc gtgtgtgcca
      661 gcaacttccc ccacggcgaa acagccgggc agggaggttt gtccccagat atccacttca
      721 atgccgccat tcatatgctg attattcatg gcaaactgca aaggctgtgt ggtgagatcg
      781 taaccgtgca tcttatacag cgagatagac agcggattca ttcgttgcag ccgttcgatg
      841 ggcgatggtg ccagagcgtc gttattttcc agatacgcgc gaacgtcgtc gtccagtcga
      901 tctaatgaga acggcaggtc acccggcacc gcttcaggat tgcgattgaa atccataaat
      961 acctgacgcc ctgattgctg ctcttgcgct actgccatat ctaacaagct ggagccaaaa
     1021 tccatcaccc gagtggcgtg gaacggccac tgatagcctt tacggaaaat gtttgaagcc
     1081 agctcctggg tggtgcgata gtaatccgcg aggaagttat actcgttacc ctcagcatcc
     1141 acggaataga tatacgggat cacctgtaca taggtgccgg ataaattcca cggaaacgtg
     1201 ctacgcggcg tgcctatacc aaactggctt tcggtcagat tggttagcgt cagaccttcc
     1261 tccagcgcca gccccagcga gccgaagcat ttatgtggat aaacactgtc gcgataaagc
     1321 tcgcccggtc cgcccgttgc cagtaccaca ttgggcgcag tcacaattgc cagcccccat
     1381 gggttatggg cgcgatgacc ggtcgcgagg attgcccctg ccacgcggtc ttcgccgttt
     1441 tcgtcacgct gatgcagcag tttaatcact gttgcactgg tcaacactgg aatggcgagg
     1501 cgctgtactt cttccaacag cactttcacc attaaccttg aggtacgcgg cccacacgag
     1561 gttgcacgcc cggcttcgtc atggtcggtt tgataacgaa gaatcgcgcc atagcgatct
     1621 tccggtaatt ccagaccaag atattgcaac ccgcctagag tgtgcagaga acctaccgct
     1681 tcgacataag cggtgtcgtg atccatcgcc ccaccgctcg ccagtgcctc tgccagtttg
     1741 gtgaagttgt cgccgttgcc cgcggtagcg gcggtaaata gtgtctgttt atcggaacca
     1801 gaacatgccg acgtccccat atataacccg gcggtagcga tcagcacatt ttgctggcgg
     1861 cgtttaagtt caactgccgc acgtaatctt gctgcaccac tgccgactac cagggcatct
     1921 gtttgccaga gtgggtaatt aacaccgtct accgtgacaa cccatgcggg ctctgcctgt
     1981 gcaaaaccct ttgggaaagt aacgtgcgtc agcgcatcaa ggatggtgtc atcaagctga
     2041 ctcatgcatc ctccatcggc gtaaacaggc tactttccat caggcgtggg tgcttgataa
     2101 ttggacggaa agccatatac ggcagaatgt cgcgctcaat ctccacaccc ggcgcgattt
     2161 caattaattc aacgccttct gccgttaact ggaatactgc gcgttcagtg atatacaaca
     2221 cttcctgacc actttgctgt gcgtaggcgg cgctaaaagt gattttttcc accttggtaa
     2281 ccagtttagg gatttgacct gactgggcga tatgcaagcc atctggtgtt atatcgatct
     2341 tgctgccttt agcgtcgaac gtgccgcaga acaccacttt acgggcattt tgcgcaattt
     2401 cgagaaatcc gccggggcca atcagattgc cattgagatg ggagacgttg acgttaccgt
     2461 actgatccat ctctcccatg ccgaggaagg tgatatcgat ccctccgcca ctgtagaact
     2521 caaattgatc gagtgatgga ataatggcat cggcgttgcg ggcgcagccg aaaaacgcat
     2581 catccagcat catgccgtta tgtacgcctt gctcgacgct cagccataaa ctttggtaag
     2641 gaacgccttc gcgcagcgct actcctggaa cgccgccggg aataccaaag ccaaagttgg
     2701 ttgaagcgcc agctaccagt tcgcgtgctg cccgacgggc aatcaggcga cgtaccggat
     2761 gactaaccag ttcaatagcg tcgttagaac tcagacggcg atgttggccg ctgatggtca
     2821 ggtcgtaacc gccaagatag gtttgtggct gtttgcggtg ttcaacgatg ccatcaacca
     2881 gaatgcccgg taatttgact cggcgtggtt caatcgcgcc agcttccagc acatcgcgta
     2941 cctgtacgaa cactttgccg ccgctgttgt gtgctgccag cgccatggaa tagctatcca
     3001 tatcaatcgc ttcttcttca aggctgacgt tgcctcgagg atcggcataa gtgccacgca
     3061 aaatcgcgta atccactttg aaagggcgat aacgaagttt ggtttcaccg tcgatttcaa
     3121 tcagttctac caggtcgtcg gtagtgcatt cattcgactt accgccgcca ttgcgtggat
     3181 caacaaacga tcccagccca acgtgggtaa aaagccccgg acgtccggag ccgatctccc
     3241 gtagcagtgc ctgaatcacg ccaccaggaa agcagtaggc ttcaatcgtg ttatttttta
     3301 ccagcgcctg cattttgggc gaccaggtaa agtgcccggc aataatgcgt ttgagcatct
     3361 ctgcgtgcgc aaaacggtta gtgcctttgc agtcgcgatc gccaataccc agcgagtgga
     3421 ttagcgtcag gtcgcgaggg tgtccggttt gcaggaaacg cgcttcaata gcagccagaa
     3481 tatggtcggc ttctaccata ccgccgccgt taccgctaat agcaatagtc gcaccgtcct
     3541 gaatttgcgc cgccagtgcc tcggcggttg ttatcttacg catacaattt ccttattgat
     3601 tatggaagct cacgctactt ttttcggcaa aggcgcgcgt cgcctgctgg caatcctgag
     3661 tggcggacat taatccggcc agtagctggt gcgggtaatc ggcatgttta ttttccagtg
     3721 ccagaatcag ttgcttaata tgcgccagtg ccaccggacc gcatttttcc agctgcgcta
     3781 actggttcgc catccagctt tccacctgtt ctttttctac cacttcatca attaaattcg
     3841 ccgcctgagc ttcctgcgcc gtcaggcgtt tacccagcat cagcatctgg cgaccgacca
     3901 ccggaccgac ctgattaagc acacgttcaa tgcccatcca gccaggcacc atgccgagca
     3961 tcacttccgg gttagagaat ttcgcgccgg ggcgggcaat acgaatatcg cagcacaagg
     4021 ccagttcaat accaccgccg atggtatgac cgttgagatt cgcaacggtt aattggggta
     4081 tgtttcgcag gcgattaaaa acgtcattac cgcgtttaat ccattttctg cccatatcta
     4141 atggcgaata ggccgaccac gatttaatat cgccgcccgc acaaaagaat ttatcgccgg
     4201 ttgccgttaa ttcgactaat cgtaatgtgg tgtcgttttc aatttcattt aaataatggt
     4261 cgagagattc gatcacctct tcgttaatag catgacattt atcttcacgg ttcaatgtca
     4321 ggcggcagga agccgccact ctgctgaaca gaacgggttg gtcactcatg atcattcctt
     4381 aacaataatg cgcgatgcga tcgacgctaa tatccagcgt gctgttaata tctttctgcc
     4441 accagtaagg cgagaatatt tccagttcaa tagcaccatt aaatccggcg ttttcaacca
     4501 gccgacgaat tgacggaata ttgatgacgc catctcccgg cataccacgg tcattgacca
     4561 gatcagtggt cggcactaac cagtcggaaa catgaaacgc gaggatgcgt tttccggcac
     4621 gcaggatctg actggcgaga tccggatccc accagacgtg ataaacatcc accgccacgc
     4681 cgaggccaaa ctcaccatcg ggatcgagtt catcacacca gtccagcgcc tgacgtaacg
     4741 tgcacaggca agagcgatcg gcagctgtca tcgggtgcag tggctccagc gcaattggca
     4801 cgccgacatc tttcgaatgt ggcagcaact ggcgaatccc ttgtttcact tgttctcgcg
     4861 cttcatatag atctttagtg cccgttggca gaccgccaac cacctgcata taacaggcgg
     4921 cgttaagcac cgctgcgtcg tccagcgccc ggcggttatc atcaatcgcc agtttgcgtt
     4981 ccgccagtgt cggcgcggtg tagtaagtgc tacggcacaa accggaaacg ctcatgttac
     5041 tggcggcaag ctggcgggtg atttgctgga gatcttcacc ctgcaactcc ctgcgccagg
     5101 gggcaattgc gccaataccg cgtgcggcgc aggcatcaat aatggcgggt agcggcgttt
     5161 tatagcccag tgtcgcggta ttgatactga ataaatccgg gcgttgtaac agatctctca
     5221 tgattcagcc tcagaagcgc ggcatactta agccgccgtc gatggcgacc gcctgaccac
     5281 aggtgtaaat cagtttacct tccgccattg cgcggacggt ggaagcaata tcagccggat
     5341 aaccccaacg tccccacggc accagacctt tggcaatcag ttcgtcgtaa taagccgttg
     5401 ccggaatagt catatcagtt ttgatgagac cagggcgcac ttcataaacg ccaatttgtt
     5461 cattacaaag gcgagcagca aacagacgag cagcggcaga aacggcggtt ttggcaatgg
     5521 tgtattcgcc gcgattcatc gccagcatga tggcgttgat ggaactgacg aaaataatcg
     5581 agcggtgcgg cagctccgct tccggtttcg gctgtgccag taagcgctta ctgaatgcct
     5641 gagcaaggaa gaacggcgcg cgggtgttaa tggcaatgtt ttgatcgaag ctgtctggtt
     5701 cgaggtcgag gaggtcaccg cgttttttca ctgaaatccc cgcgttattg agcagacact
     5761 ccagccgccc ccactggttt tgcgccgcgt cgagcatctc ctcatgcaga gatagatcac
     5821 cgacatcagc agggaagcaa atcacttcca cgccttccgc caaacattct tgttgtgtga
     5881 tatgcagttt ttctacgctg tcggcatcgg gacgatcgtt aatcagcagg ttaaacccgc
     5941 cacgagcaag ctcctgcgca cagccctttc caataccgcg agcggctccg gtaatcacgg
     6001 caacaggacg agtggatttc atacaatagc tctctttttt gaattttgtt tccttggtga
     6061 tgattagctt gcgactggag gataaaaaga tcaaccatct agttggttga tatgcgatga
     6121 cgatcacagg acatttgata acctgatgaa agtacaagtt tttgcccttt tttctgaagc
     6181 tgaaatcaaa tcaggttatg atagtcacca cgaagaggtc gtggggaagc gttatgtatc
     6241 ttgataccag caacgtacag agcctgaagg aaaagctgct gttatgcgcg gttaatgaat
     6301 ttgccgaata tggttatgaa ggggccaggg tcgataatat tgttaaggct gcggggtgta
     6361 gtaaacagac ggtttatcat cactttggta ataaagaaaa tttatttatt gaagtactgg
     6421 aatatacctg gaacgatatt cgacaaaaag aaaaggccct tgatttctca gatcttctgc
     6481 cacaaaaggc tattgagaaa attattgatt ttacatggga ttattatatt gctaacccct
     6541 ggtttttaaa aattgtgcat agtgaaaatc aaagtaaagg tgtgcattat gcaaaatcac
     6601 agcgtctctt agaaattaac catgcgcact tgcagttaat ggaatcctta ttggatgaag
     6661 ggaagaaaca caatattttt aagccagata tcgacccatt gcaggtgaat attaatattg
     6721 ctgcgcttgg cggatattat ttgatcaacc agcatacgct tggcctggtt tatcatatca
     6781 gtatggtttc cccccaggca ctggaagcca gacgtaaggt catcaaagag acaatcctta
     6841 gctggctttt ggttgaccct tcatctaccg cgcacgaata aaactgccat ccggctggcg
     6901 ggtgaacagg acctgttgat tattccccgt atcaatggtt aagcccgtca ccacgccgct
     6961 ggcgttctgg cggattttca ccatctgccc gttttgcaaa ttactcagcg gcttacccgc
     7021 gccttctacc cgcgccttct acctgcgcca ttgcatagac atcggtagcg ggcagtccgt
     7081 ggtcgtggaa cagctgcgcc atcgttttac cgggttcgac acggtaagag cgccattgat
     7141 tatcaattcc gctatctggc tggaatggtt gcgtttgggt agtttgcggc tgctcttctg
     7201 gctggccttc ctgtataggt tctggagcga ccggagccac ctgatcagga tcattttgtg
     7261 gtgtgactaa ttgcgcccgc agctgttctt ctgtcggcgg ttgtgattgc gactgaatat
     7321 ctaactgcgc ttcacgcgtc acgaccggcg cgttgggcgt atcatcagat ggaagcagaa
     7381 atccgaccac caatacaatg gcggcaataa tgatcccccg acgatgcatc ggcggcagcg
     7441 ggtccatgaa gcgaaaattg tccggcgcgt gccagacttt ctccagggtt ggttttagtt
     7501 caaagcgccc gggcatggtt tcctcctgct ccgcgtcttg ttcctcaatc atagcctatg
     7561 aataagctaa cgctatgatg tccgtggtaa acccgccttt attatattca tacgggatat
     7621 tgctattgtt tctttttccc cgggatttgt catcattcct gcgacaaagt tttacccaaa
     7681 gaagtgtggc tgatatgctg cccgctactt ttatacccta agaaaggaaa tacgatgacc
     7741 accccaactt ttgacaccat cgaagcgcaa gcaagctacg gcattggttt gcaggtaggg
     7801 caacaactga gtgaatctgg cctggaaggg ctgctgccag aagcactggt tgcaggtatt
     7861 gccgatgcgc tggaaggcaa acatccggct gttccggttg atgtggtgca tcgcgcgctg
     7921 cgtgaaatcc acgaacgcgc cgatgccgtt cgtcgtcagc gtttccaggc gatggctgct
     7981 gaaggtgtga aatacctgga agaaaacgcc aaaaaagaag gtgtgaatag caccgaatct
     8041 ggcctgcaat tccgcgtgat caaccagggt gaaggcgcaa ttccggcacg taccgaccgc
     8101 gttcgtgttc attacaccgg taaactgatc gacggcaccg tgtttgacag ctccgttgct
     8161 cgtggtgaac ccgctgaatt cccggttaac ggcgtgatcc ctggctggat tgaagcactg
     8221 actctgatgc cggtaggttc taaatgggaa ctgactatcc cgcaggaact ggcatatggc
     8281 gagcgcggcg caggtgcatc catccctccg ttcagcaccc tggtgtttga agtcgaactg
     8341 ctggaaatcc tctaagcagc gcattctgtt cccctcgaac cagaggggag caggcattca
     8401 gcaataaacc cttcagtttg ccaaacggcg ctattttgtg ttgcaaagac cccgtaagcg
     8461 tgtatttttg tgagctgttt cgcgttatca ccgtgatatg acactcactt taaacataaa
     8521 attaacatta gatctaaatc ttagtattca tcccgcgtat tgttacctaa tatcgatgag
     8581 tcccgataca gattcgtcgt atcatagact gactaaaggc cgtagagcct gaacaacaca
     8641 gacaggtaca ggaagaaaaa aacatggtag atcaggtaaa agtcgttgcc gatgatcagg
     8701 ctccggctga acagtcgcta cggcgcaatc tcacaaaccg acatattcag cttattgcca
     8761 ttggcggtgc cattggtacg gggttgttta tggggtctgg caaaacgatt agccttgccg
     8821 ggccgtcgat cattttcgtt tatatgatca ttggttttat gctctttttc gtgatgcggg
     8881 caatggggga attgctgctt tcgaatctgg aatacaaatc ttttagtgac ttcgcttccg
     8941 atttactcgg gccgtgggca ggatatttca ctggctggac ttactggttc tgctgggttg
     9001 taaccggtat ggcagacgtg gtggcgatca cggcttatgc tcagttctgg ttccccgatc
     9061 tctccgactg ggtcgcctcg ctggcggtga tagtgctgct gctgacgctc aaccttgcca
     9121 ccgtgaaaat gttcggtgag atggagttct ggtttgcgat gatcaaaatc gtcgccatcg
     9181 tgtcgctgat tgtcgtcggc ctggtcatgg tggcgatgca ctttcagtca ccgactggtg
     9241 tggaagcgtc attcgcgcat ttgtggaatg acggcggctg gttcccgaaa ggtttaagtg
     9301 gcttctttgc cggattccag atagcggttt tcgctttcgt ggggattgag ctggtaggta
     9361 caacagctgc ggaaaccaaa gatccggaga aatcactgcc acgcgcgatt aactccattc
     9421 cgatccgtat cattatgttc tacgtcttcg cgctgattgt gattatgtcc gtgacaccgt
     9481 ggagttcggt agtcccggag aaaagcccgt tcgttgagct gtttgtgttg gtaggtttgc
     9541 ctgcggctgc cagcgtgatc aactttgtgg tgctgacctc tgcggcgtct tccgctaaca
     9601 gcggcgtctt ctctaccagc cgtatgctgt ttggtctggc gcaggaaggt gtggcaccga
     9661 aagcgttcgc taaactttct aagcgcgcag taccagcgaa agggctgacc ttctcctgca
     9721 tctgcctgct cggtggcgtg gtgatgcagt atgtgaatcc tagcgtgatt ggtgcgttca
     9781 cgatgattac aaccgtttcc gcgattctgt ttatgttcgt ctggacgatt atcctttgct
     9841 cgtacctggt gtaccgcaaa cagcgtcctc atctgcatga gaagtcgatc tacaagatgc
     9901 cgctcggcaa gctgatgtgc tgggtatgta tggcgttctt tgtgttcgtg gtcgtgttgc
     9961 tgacactgga agatgacact cgccaggcgc tgctggttac cccgctgtgg tttatcgcac
    10021 tggggctggg ctggttgttt attggtaaga agcgggctgc tgaactgcgg aaataaccgc
    10081 attatcatgc tggatggcgc aatgccatcc agcttttaga tcactcaccc gccagcgcgc
    10141 gtgggaacag tacattgttt tccagactga tgtgatccat caggtcatca atcagttcat
    10201 taatgccgtt atacatcgct ttccaggtgg tgcaggcttc tggcggcggt gtgacgttat
    10261 tggtagtgtg tttgatcact tccagcagtt cgcccgcttc atcgtgctcg ctttccatta
    10321 cgctgattgg ccccattgcc tggctgccca tgccttgttt gatcatcggg aagaggatct
    10381 gctcttcttt catcatgtgg ctggaaagct cttcatgcag catggtcagg tattttgtca
    10441 gcccttttgg cacgctcggt ttgtcggcgt gaacgcgctc gactttagtc gcttgcagga
    10501 tcagctccgg cagttgctcg cggtgacgat cgtggtagcg cacgatgata tggtcaatga
    10561 tttctgccag cggggcgcta cgccagtctt tctcaatcgg ttgttcagca agctttgcca
    10621 gttcagcttc aatgacctca acatccagtt ctttacgtgc cgccgcgcgc gccagcgtct
    10681 gcttaccgcc acagcagtaa tccatatcat atttacgaaa cagagctgaa gcgcgaggaa
    10741 tagagagcgc cagttcacct aaaggttggt cgcgataagc catagctgat acctcattct
    10801 taataagata agatgtattt taaatgcatc tttaaggcaa aagctataac ccttacgtag
    10861 cagaggctta tttaactcac agccagtatg tcaactttct gagacagatt cagttaaagg
    10921 cttttccggt tttgctctga ctgcaatgac cacgccaacc actaacagcg cgataccgct
    10981 cagcgtcatc agcggcggca tttgctggcg tatcaaaaag gtgtacagca aacctgccag
    11041 tgtttcgaaa acgatcagcg gcccgagaat cactgtcggt aatcgctggc tggcgacgtt
    11101 ccagcagagt gcgccaaccc atgagcaaag cacggctatc gcaaccatca gactaataaa
    11161 caccagcgga cgggggccaa aaggtaggga gaagtccggc gtttgcgtat tcagccagta
    11221 acaggcgacg agatagccga tgagagaaac cggcagtgtg accagcgcct gcgccgtcgc
    11281 ccacatcatc ggatgtttgt cgggattctc ccgcagccag cgggcgttgc gcagggcata
    11341 ccatgcccag cagaccacgg aaactaacgc tagcacgatg cctgaggtat aacgtgccca
    11401 gtcaaaatcg gggagtccgt ggtttaactc agcaatattc acacacgcca ggccgatgcc
    11461 aatacaaacc agtgccgggg cgagttttcc ccacacgagt ttgccgtcgc gctggctata
    11521 aagcagattg gcaaaaacgg gaatcaccac cggcagggtg ccgataatca tcgtggaaac
    11581 aggcgcacca gtacgttgaa tggcactggc aaggcagaag taatagatga ggttgcccat
    11641 cattgtgagc atcaaggcgg taagccagtc gcgacgcgcc aactgacgca gacgcacgcg
    11701 tcccagccag gcaatgggca gcgcaattaa ccctaacgcc agataacgcc ccatcgactg
    11761 caacatcgcc gggtattccg gtacgatcaa cggcccgaca aaaataagcc cccacatcaa
    11821 ccctgctaac agggcgtaca gcacgccgct aatcattact ggcatccatt ggtctgtcag
    11881 aagaaagttc aggaagcaga catgattgct cccggcatcc cgtcattatt agagaggatg
    11941 cgggaggatg ccactttaat taactagtta ttaacattaa aaagatggct tacgctttcg
    12001 gctaacgttg tcgttgggcg gccaatcaat ttgctaagcg ttttgctgtt atcaaacaga
    12061 ccacctttcg atgcgccaac gtcagaatcc gccagcatat ccgccagtcc gtcgggcagt
    12121 ccgacgcttt tcagtgccgc ggcgaaatcg gcttcgctca gattttgata ggtaacctgt
    12181 ttgccgctct gtttggtcag ctctgccgct aactgtgtca acgtccaggc actatcgccc
    12241 gccagttcgt aaaccttgcc ttcgtgaccg gcttcgctaa tcacgcgtgc cgcagctgcc
    12301 gcataatctg cccgcgttgc tgaggcgatt ttgccatcgc ccgccgcacc gataaatacg
    12361 ccgtgttcca gtgctgccgg ggcgctggcg aggtagtttt cgctgtacca gccgttgcgc
    12421 agcagggtgt aaacgatgcc agaatcagcc aacattttct ccgtctcaat gtgctcatcg
    12481 gcgaggccga gcggggaggt atctgcatgt agcaggctgg tataagcaat aaatctcacg
    12541 ccagccgcct ttgcggcatt aataacatta cgatgctgcg gggcacgttg acccacttcg
    12601 ctggaagaga tcagcagtag tttttccact ccctgaagtg cagatgtcag tgcggcttca
    12661 tcgccgtagt cagcctgacg cacggtaatg ccttgtgctg ccagagcctg ggcttttgcc
    12721 ggattacgaa cgatagccac tatttggctg gcaggaaccg ttttcatcaa ggattcaata
    12781 atatagtgac caagttggcc agtggcacca gtaatagcga tcatgggaag tctccatcgt
    12841 tttgtcttgt gtttaaatac gctaacacct aaacttactt ttagtaagta cgtacaaaaa
    12901 ggtaagtatg aaatgagtca ggttagcctg tcgcaacaac tgaaagaggg taatctcttt
    12961 gcggaacagt gcccgtcgcg cgaggtgttg aaacacgtca ccagccgttg gggggtgttg
    13021 attctggtgg cgctacgcga aggtactcat cgctttagcg acctgcggcg caaaatcggc
    13081 ggggtgagcg aaaagatgct tgcgcagtcg ttacaggcgt tagaacagga tggttttctt
    13141 aaccgtatcg cgtatccggt ggtgccaccg catgtggaat atagcctcac gccgctgggc
    13201 gagcaggtga gcgaaaaggt tgctgcactg gcggactgga ttgagttgaa tttgcccgag
    13261 gtgttggcgg tgcgggatga acgtgcggca taactgccgg atgcgctgag cttatctggt
    13321 ctacggtgca tggcttgtag ggcggataag atgcgccagc atcgcatccg ccaataaatg
    13381 ccggatgcgg ttgataattt atagaccgaa aaagaagtgt tttacttact caaatccacc
    13441 tgataaatcg caaacccgat atcatcggtc gcgactttat tcatcggata ttgccctttc
    13501 tctttaataa acgctgcggc tttatctgac ggggaagttt cgaaacggat atccagtttc
    13561 ttatcgccag ctatcggtgc taaacgccag ttgttatctg ccgccgggtg aatttctccc
    13621 gcacgtttcg actcatcagc aatcctcgct gccagcaccg agcgattctc atccggtgaa
    13681 gcaaaagcga tatggctgtc gcccgtaccg gcaaatttgc cgccgtaagc gcgatagtta
    13741 ttggtggcaa cgaggaacat agcgttcgga tcaatcggct tgccattaaa ggtcaggttc
    13801 ttaatccgct ctgcattggc attaatcatc tggcactcgc cgtcatagcg ggcgggttgg
    13861 gtaacatcaa tctgataatt cacaccatca ataacatcaa agttataagt gcggaaacca
    13921 tcccagttga tgagtgactg tggtttcgtg ctgttaggat caatctggtt aaactgtccg
    13981 gcggagcact ccagccactc tttcacctct ttaccgctgg ctttcactac aatcagcgta
    14041 ttggggtaga gataaagatc ggcggcatta cggaaggtca actggccttt ttccacctcc
    14101 acatagcttg ccgggtcatt tttgcgacca ccaactttaa acggtgcggc agctgaaagc
    14161 accggcagtt ttgccagatc cggatcgccc tgaatgtaat gttcgacata cgctttttgc
    14221 gcgttgttca cgacttgcac ggtcggatcg tcctgcacca gcgccagata gctatacata
    14281 ttgtcggcag atttaccgat tggcttgctg acgaactggc gtgtggcatc gtgatcggct
    14341 ttgagtgttt ctaccagctt gctgtcttcc gccgcgaggg attttttatt ggcgatgtcg
    14401 taaatcggcc gtgcttccgc tttcgcctgc gtcacctgcc atttaccgct gtcattactg
    14461 agttgtaagt cgaccacccc aagatgatcg ccccacatgc ccggcattac cgccggaaca
    14521 ccattcagcg tgcctttggt gatatcagcc tcttcgatat cagcaaaatc tttacccggg
    14581 aaaacggcgt gagcatggcc aaacataatg gcgttaacgc ccggaatttc actgaggtaa
    14641 taaactgagt tttccgccat tactttatac ggatcggcag acagcccgga atgcgccaga
    14701 acgacaacga catcggcacc tttctcgcgc atttcaggca cgtatttgcg cacggtttcg
    14761 gtaatatcat tcaccgtcac ttttccggat aaattagctt tatcccagcc catgatttgc
    14821 ggcggcacga cgccaatata gccaatcttc agcgtctgtt tttttccgtc tttatcgacc
    14881 acttcggtat ctttaattaa atacggtgta aacattggct gtttggttct ggcgtcaatg
    14941 acgttggcat ttacataagg gaatttcgct cccgccagcg catttttcag gtaatccaga
    15001 ccgtagttaa attcatgatt gccgagtgta ccgaccgtat aatccagcgt attcagcgcc
    15061 ttataaaccg gatgaacatc acctgctttt aatcctttcg ccgacatgta atcggccagc
    15121 ggactcccct gaatcaaatc gccgttatcg accagtacgc tgtttttcac ttcattgcgg
    15181 gcatcgttaa tcaggcttgc cgtacgtacc agtccgaatt tttccgtggc ggtgtctttg
    15241 taataatcga aatccatcat gttgctatgc agatcagtgg tttccatgat acgcagatcg
    15301 accgtcgctg cattcacact ggcggcaatc agcgtggcca ggagcgttgc gctaaactta
    15361 atcatcaggg acatcctttt atcatcggga atacgaaaga aaagggagaa taaacgtctt
    15421 acttatagaa cagtgaagaa tgccacaatt ttacgctttg aaaatgatga cactatcaca
    15481 gttggcgcat tcattaacga tagggtataa gtaaaacaat aagttaacac cgctcacaga
    15541 gacgaggtgg agaaatgtta gatcaagtat gccagcttgc acggaatgca ggcgatgcca
    15601 ttatgcaggt ctacgacggg acgaaaccga tggacgtcgt cagcaaagcg gacaattctc
    15661 cggtaacggc agcggatatt gccgcacaca ccgttatcat ggacggttta cgtacgctga
    15721 caccggatat tccggtcctt tctgaagaag atcctcccgg ttgggaagtc cgtcagcact
    15781 ggcagcgtta ctggctggta gacccgctgg atggtactaa agagtttatt aaacgcaatg
    15841 gcgaattcac cgttaacatt gcgctcattg accatggcaa accgatttta ggtgtggtgt
    15901 atgcgccggt aatgaacgta atgtacagcg cggcagaagg caaggcctgg aaagaagagt
    15961 gcggtgtgcg caagcagatt caggtccgcg atgcgcgccc gccgctggtg gttatcagcc
    16021 gttcccatgc agatgcggag ctgaaagagt atctgcaaca gcttggcgaa catcagacca
    16081 cgtccatcgg ctcttcgctg aaattctgcc tggtggcgga aggacaggcg cagctgtacc
    16141 cgcgcttcgg accaacgaat atttgggaca ccgccgctgg acatgctgtg gccgcagctg
    16201 ccggagcgca cgttcacgac tggcagggta aaccgctgga ttacactccg cgcgagtcgt
    16261 tcctgaatcc tgggttcaga gtgtctattt actaaattca gatggcagaa acagtgtatt
    16321 tcctgattct gccatcctga tttctcccaa cctaaaaagt tataaataaa aagagattgt
    16381 atttaaagtg caaaa
//
LOCUS       DAJVUN010000084        16221 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.084, whole genome shotgun sequence.
ACCESSION   DAJVUN010000084 DAJVUN010000000
VERSION     DAJVUN010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16221
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.084"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..236)
                     /locus_tag="OQQ76_002308"
                     /pseudo
     CDS             complement(1..236)
                     /locus_tag="OQQ76_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310425.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(181..560)
                     /locus_tag="OQQ76_002309"
                     /pseudo
     CDS             complement(181..560)
                     /locus_tag="OQQ76_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001014786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdiL family protein"
     gene            complement(696..803)
                     /gene="rprA"
                     /locus_tag="OQQ76_002310"
     ncRNA           complement(696..803)
                     /ncRNA_class="antisense_RNA"
                     /gene="rprA"
                     /locus_tag="OQQ76_002310"
                     /product="antisense sRNA RprA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00034"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00034"
     gene            complement(989..2101)
                     /gene="ydiK"
                     /locus_tag="OQQ76_002311"
     CDS             complement(989..2101)
                     /gene="ydiK"
                     /locus_tag="OQQ76_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter YdiK"
                     /protein_id="HCS1968791.1"
                     /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV
                     VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS
                     GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI
                     GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV
                     VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT
                     WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL
                     AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK"
     gene            2490..5546
                     /locus_tag="OQQ76_002312"
     CDS             2490..5546
                     /locus_tag="OQQ76_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HCS1968792.1"
                     /translation="MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTD
                     NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD
                     MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT
                     DASGQGSLVYGKTSDHVLGVRAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVY
                     QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL
                     DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS
                     ELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCREL
                     AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY
                     GMFGHVDAGVLHVRPALDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY
                     SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI
                     AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR
                     GVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTL
                     CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR
                     KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTS
                     YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK
                     LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWY
                     FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE
                     LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK"
     gene            5543..5953
                     /gene="menI"
                     /locus_tag="OQQ76_002313"
     CDS             5543..5953
                     /gene="menI"
                     /locus_tag="OQQ76_002313"
                     /EC_number="3.1.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
                     /protein_id="HCS1968793.1"
                     /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS
                     RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGIC
                     KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL"
     gene            6053..6241
                     /locus_tag="OQQ76_002314"
     CDS             6053..6241
                     /locus_tag="OQQ76_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiH family protein"
                     /protein_id="HCS1968794.1"
                     /translation="MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTL
                     SSAELKEEIYFAWRLGVH"
     gene            6788..7156
                     /gene="sufA"
                     /locus_tag="OQQ76_002315"
     CDS             6788..7156
                     /gene="sufA"
                     /locus_tag="OQQ76_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold SufA"
                     /protein_id="HCS1968795.1"
                     /translation="MDMHSGTFNPQDFTWQGLTLTPAAAIHIRELVAKQPGMVGVRLG
                     VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQI
                     FKFHNPKAQNECGCGESFGV"
     gene            7165..8652
                     /gene="sufB"
                     /locus_tag="OQQ76_002316"
                     /pseudo
     CDS             7165..8652
                     /gene="sufB"
                     /locus_tag="OQQ76_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416198.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
     gene            8662..9408
                     /gene="sufC"
                     /locus_tag="OQQ76_002317"
     CDS             8662..9408
                     /gene="sufC"
                     /locus_tag="OQQ76_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HCS1968796.1"
                     /translation="MLSIKDLHVSVEDKAILRGLSLAVRPGEVHAIMGPNGSGKSTLS
                     ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA
                     LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA
                     VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV
                     LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ"
     gene            9383..10606
                     /gene="sufD"
                     /locus_tag="OQQ76_002318"
     CDS             9383..10606
                     /gene="sufD"
                     /locus_tag="OQQ76_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCS1968797.1"
                     /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR
                     KHENWKYTPLEGLTNSQFVSIAGEISPQQRDALALTLDAVRLVFVDGRYVPALSDAIE
                     GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMYITQG
                     VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL
                     AFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP
                     VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN
                     LLMGKLAEVDTKPLLEIYADDVKCSHGATVGRIDDEQMIIYAFAAELTEALRDEGLKQ
                     QVLARIGQRLPGGAR"
     gene            10603..11823
                     /gene="sufS"
                     /locus_tag="OQQ76_002319"
     CDS             10603..11823
                     /gene="sufS"
                     /locus_tag="OQQ76_002319"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase SufS"
                     /protein_id="HCS1968798.1"
                     /translation="MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEA
                     EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA
                     NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLHTL
                     FDEKTRLLAITHVSNVLGTENPLAGMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD
                     FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA
                     GTPNTGGIIGLGAALEYVSVLGLNNIAEYELNLMHYALSQLESVPNLTLYGPQNRLGV
                     IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD
                     RLVTGLQRIHRLLG"
     gene            11836..12251
                     /gene="sufE"
                     /locus_tag="OQQ76_002320"
                     /pseudo
     CDS             11836..12251
                     /gene="sufE"
                     /locus_tag="OQQ76_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416194.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfuration protein SufE"
     gene            12400..13403
                     /gene="ldtE"
                     /locus_tag="OQQ76_002321"
                     /pseudo
     CDS             12400..13403
                     /gene="ldtE"
                     /locus_tag="OQQ76_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707577.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtE"
     gene            complement(13467..13703)
                     /gene="lpp"
                     /locus_tag="OQQ76_002322"
     CDS             complement(13467..13703)
                     /gene="lpp"
                     /locus_tag="OQQ76_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein lipoprotein Lpp"
                     /protein_id="HCS1968799.1"
                     /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL
                     SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK"
     gene            complement(14014..15426)
                     /gene="pykF"
                     /locus_tag="OQQ76_002323"
     CDS             complement(14014..15426)
                     /gene="pykF"
                     /locus_tag="OQQ76_002323"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010346010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase PykF"
                     /protein_id="HCS1968800.1"
                     /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG
                     QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN
                     SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL
                     PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII
                     SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT
                     ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER
                     TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP
                     DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV
                     MVSGALVPSGTTNTASVHVL"
     gene            15983..16192
                     /gene="fumD"
                     /locus_tag="OQQ76_002324"
     CDS             15983..16192
                     /gene="fumD"
                     /locus_tag="OQQ76_002324"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="HCS1968801.1"
                     /translation="MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTA
                     LANKRIQRSELDKQAMETVINALVK"
BASE COUNT         4130 a         3901 c         4266 g         3924 t
ORIGIN      
        1 atactgtaat aagagatggt ttttaatgcc tcagcttctg acataccagc aaaagccatc
       61 gcatatttgg gcatccacac cacaatcaca taaaaggtcg agaatgcggc tacaccgaac
      121 agtaccgatg aaacaccttc cagccagact aacggtttgc tgttcatttg cggtaattca
      181 ttagctacgc tggcgtccac caactggctg gggaatttgc ttttcaacag cattaccttc
      241 agcggctacc gattgataga tcttccagtc aataaaattg ccatcagggt agactcgttg
      301 aaatgcggtt aagtcgggga aaaaacgcat ggtgttgttg ccgatgcggt tatttatttt
      361 ctctatgatg gcatgaagat gtttttttct ttgctgacgc atagccaaca gttgctcgac
      421 tacacgatca ggaatggcac acttgccatt ttcccactga cgccagcttt cactgtcacc
      481 ggtctgggca atccaggtgc gcattcatca atagtcatgg caaaaatatg gcggagtgcc
      541 tggagttcat aagcgttcat cgtgtaatgg ctgcatgaaa taaacaataa aatataaata
      601 acattatcag cctgctgacg gcttgaagag agtcacagta tcttgtgcaa cattattgga
      661 aagagtgagg ggcgaggtag cgaagtggaa aaatgttaaa aaaaagccca tcgtgggaga
      721 tgggcaaaga ctacacacag caattcgttg tttcactcag gggatttcca tgcttataaa
      781 tcaatatgtt gatttataac cgtgagctaa tagtaggcat acggactttt tgcgtcgatc
      841 agattcgtct cattagttta aaaactgtaa agaatttgcg acaggtacta ccagctgaat
      901 ggcggtaagc aggaaaatat ggggaagagc aagcaaatat caattagcgg gggttaacaa
      961 tcaggcggca gagccgcctg atgagaaatt acttattcgg tttctcgatt tcgccaagtt
     1021 cttcgagaat ttcttccggt tggtccgtcg gcggcgggac ttcttccacc cacgcggcaa
     1081 acagacgcca ggaaacggct aacagaaccg gaccaataaa cagaccgatc atcccgaaag
     1141 caatcaaacc accaataaca ccagagagga tcaggatcag cggtaaatcg gcacccatgc
     1201 gaattaacat tgggcggatg acgttatcca gcgtgccaac cacaccgctc cacactaaca
     1261 ataccgttcc ccaggtggta tcgccagtcc agtagagcca gataatcgcc ggaatcagta
     1321 ccggcaacgg gccaagctgg acaaggcagg agaggatcat taacaccgtt agcaacgttg
     1381 cataaggtac gccggatacg gcgaggccga taccgccaag cactgcctgt actaacgccg
     1441 tcaccaccac acccagcgcc accgcgcgga tagcctgtgc cgccagcagt acggcggcat
     1501 ctccgcgaac gcctgccaga cgggttgcaa aatggcgaat gccttgtgcc acctgttcac
     1561 cgcgccagta cagcagggca ctgaagagaa gcatcagcgc acaatgcacc ataaagcgcc
     1621 cgatatgcgc cgcctgccca acgaaccagg tggtggtggt gccaatataa gggcggactt
     1681 tcgccatgat cgccgtcccc cccatatcca gcaagttgtg ccagcctgca tacagcttcg
     1741 cgccaatcac cggaatggta ttaagccacg ccagatcggg taacgtcatg tcgccgctgg
     1801 aaatggcttt aattagcggg ccgctgccgt cgacgatact gttaaccagc aaagcaatag
     1861 ggatgataaa caccatcact aataacagcg tcatcaccag aacggcgaga gagcggcggc
     1921 caaacatgat cttttgcaaa cgtaacaata ccggccaggt ggcgataacc accgtaccgg
     1981 cccatgcaaa gccgagaata aagggttgaa caatccacag acatgccaca atcatgatgg
     2041 ctaaaaacag caccgaaagc agaatttgtg cgacatccct gggctgacga acatttacca
     2101 taactacttt tcaccttttt tgtgcgtcaa atcgtcgacg cgacgtgaac acgcgaaact
     2161 cacctgcata atgatgagca atttcagcgg tttttaacag gccgattctg cccttaattc
     2221 tgatgggcgt gttagaaaaa aatgtggtac aacaactcag gcaacacgca aacgatttac
     2281 tcgtcgtatt tcaagttgca tgtgctgcgg ctacgttcgt tcaccccagt cacttactat
     2341 tgtaagctcc tggagttcac tcgcttgccg ccttcctgca actcgaaatc catagagtaa
     2401 ataaacatct cctttcagtg cgctattgca gccgcctgaa agaatagtgt atcgacctac
     2461 atcacagacc gcaggaaagg ggcaatataa tgattccaca gatttcccag gcacccggcg
     2521 tcgttcaact ggtgcttaat tttttgcaag agctggagca acaaggtttt accggcgata
     2581 cggcgacaag ttatgccgat cgtctgacaa tgtcgaccga caacagtatt taccaacttc
     2641 tccccgatgc ggtggtattt ccgcgttcaa ccgcagatgt ggcgctgatc gcccgtcttg
     2701 ccgcgcagga acgctattca tcgctgatct ttaccccccg cggcggcggc accggcacta
     2761 acggtcaggc gctcaaccag gggattattg ttgatatgtc ccgccatatg aaccgcatca
     2821 tcgaaattaa ccctgaagag ggctgggtgc gcgttgaggc cggggtgata aaagatcaac
     2881 tcaatcagta cctgaaaccg ttcggctact tttttgcgcc ggaactttcg accagcaacc
     2941 gggcaacgct cggtgggatg atcaataccg atgcatccgg tcagggatcg ctggtctatg
     3001 gcaaaacgtc agatcacgta cttggcgtac gcgcggtgtt gttggggggc gatattctcg
     3061 atacgcaacc tttacccgtc gaattggcgg aaacgctggg taaatccaat accacaatcg
     3121 ggcgaattta taacacggtt tatcaacgtt gccgtcagca acgccagtta attatcgaca
     3181 acttccccaa acttaaccgc tttcttaccg gttacgatct gcgtcatgtc tttaacgatg
     3241 agatgaccga gttcgacctg acgcgcattc tgacgggttc agaagggacg ctggccttta
     3301 ttaccgaagc gcggctggat attacgcgct tgcctaaagt gcgccgtctg gtgaacgtca
     3361 aatatgactc ttttgactct gcgctgcgta acgcgccgtt tatggttgag gcgcgggcgc
     3421 tttcggtaga gacggtggac tcaaaagtgc tgaatctggc gcgggaagat attgtctggc
     3481 attccgtcag cgagttgatt accgatgtgc ctgaccaaga gatgctcggg ctgaacattg
     3541 tggaatttgc tggtgatgat gaggcgctga ttgatgagcg ggtaaatgca ctctgtgcgc
     3601 ggttggatga gctgatcgcc agtcatcaag caggtgtcat cggctggcag gtgtgccgtg
     3661 agctggcggg ggttgaacgt atctatgcaa tgcgcaaaaa agccgttggt ctgcttggca
     3721 atgccaaagg tgccgctaag ccaattccgt ttgctgagga tacctgcgta ccaccggaac
     3781 acctggcgga ttatattgct gaatttcgcg cgctgctcga cagccacggc ttaagctacg
     3841 gtatgttcgg tcacgtcgac gcaggtgtct tgcacgtccg tccagcgctg gatatgtgcg
     3901 atcctcaaca agagattttg atgaagcaaa tctctgatga cgtggtggcg ctgactgcga
     3961 aatacggtgg tttgttgtgg ggcgagcacg gcaaaggttt tcgcgctgaa tacagcccgg
     4021 cgtttttcgg tgaggaactt tttgcagaac tgcgcaaagt gaaagcggca tttgacccgc
     4081 ataaccgact caacccaggg aagatttgcc cgccagaagg tctcgatgcg ccgatgatga
     4141 aagtggacgc ggtgaagcgc ggtacattcg atcggcagat ccccattgcg gtacgccagc
     4201 agtggcgcgg tgcgatggag tgtaacggca acggtttatg cttcaacttt gatgcccgta
     4261 gtccgatgtg tccgtcgatg aagatcaccc agaaccggat tcattcaccg aaagggcgcg
     4321 caacgctggt gcgtgaatgg ctgcgtttgt tggcggatcg cggcgttgat ccactcaaac
     4381 tggaacaaga actgcctgaa tccggcgtca gtttgcggac gttaattgcc cgcacgcgca
     4441 atagctggca tgcgaataaa ggcgaatatg acttctcaca cgaagtcaaa gaggcgatgt
     4501 cgggctgtct ggcctgtaaa gcgtgttcga ccctgtgccc catcaaaatt gatgtgccgg
     4561 agtttcgctc tcgttttctg cagctctatc acacccgtta tttacgcccg ctgcgcgacc
     4621 acctcgtcgc tacggtcgag agctacgcgc cgctgatggc acgcgcgccg aaaaccttta
     4681 acttcttcat taaccagccg ctggtgcgca aactctcgga aaaacatatc ggcatggttg
     4741 atttgccgct gctgtcggtc ccctcgctac aacaacaaat ggtggggcat cgctcggcaa
     4801 acatgacgct ggaacagctt gaatctctca atgcagagca gaaagcgcgc acagtgttgg
     4861 tggtgcagga cccctttacc agctattacg atgcgcaagt ggtggcggat tttgtccgtc
     4921 tggtcgaaaa attaggtttc cagcctgtgt tactgccatt ttcgccaaat ggcaaagccc
     4981 agcatattaa aggttttctt aatcgttttg cgaagacggc gaaaaagacg gcggatttcc
     5041 tcaaccgtat ggcgaagctg ggtatgccaa tggtgggcgt cgatccggcg ctggtacttt
     5101 gttatcgcga tgaatataaa ctggcgctgg gcgaggagcg tggcgagttt aacgtcttac
     5161 tggcgaatga atggctggca agcgcacttg agtcacagcc agtggctaca gtcagcggtg
     5221 aatcatggta tttctttggt cactgtaccg aagttaccgc cttgccgggt gcgccagcac
     5281 aatgggccgc gatatttgcc cgttttggcg cgaaactgga aaatgtcagc gtgggttgct
     5341 gcggcatggc agggacttac ggacatgaag cgaaaaacca tgaaaattcg ctcgggatct
     5401 atgagttatc ctggcatcag gctatgcagc gactgccgcg taaccgctgt ctggcgaccg
     5461 gatattcctg ccgtagccag gtaaaacggg ttgaaggcac gggggtacgc catcctgtgc
     5521 aggctttact ggagattatt aaatgatatg gaaacggaaa atcaccctgg aagcactgaa
     5581 tgctatgggt gaaggaaaca tggtggggtt cctggatatt cgctttgaac atattggtga
     5641 tgacaccctt gaagcgacaa tgccagtaga ctcgcggaca aagcagcctt tcgggttgct
     5701 gcatggagga gcatccgtgg tactggccga aagtatcggt tccgttgccg gttatttatg
     5761 taccgaaggt gagcaaaaag tggttggtct ggaaatcaat gctaatcacg tccgctcggc
     5821 acgagaaggg cgggtgcgcg gcatatgtaa accgttgcat ctcggttcgc gtcaccaggt
     5881 ctggcagatt gaaatcttcg atgagaaagg gcgtttgtgc tgttcgtcac gattgacgac
     5941 cgccattttg tgacgttgtc accagaaaag tgtgacgcat attgcttttg gtcattatct
     6001 gcacagtaaa cggtggtata ctgtacacgt cttgtctaaa agcgaggatg ctatgtctac
     6061 tcaacttgat cccacccagc tggccattga atttttacgc cgtgaccaga gcaatctttc
     6121 acctgcccaa tatctcaaac gtctgaaaca actagaactt gaatttgctg acctgcttac
     6181 tctctcttct gctgaattaa aagaagaaat ctactttgcc tggcgtctgg gcgtgcattg
     6241 atcctgactt aatgccgcaa gttcgccaaa tcgacctgga ttaacctccg tccaggttcg
     6301 atgaccttct taatactgct tatctaccac ctgatattgt tcaaaaataa tactaatcgc
     6361 agtttgtgtt aaaacggcgg gttagcttta tgagattatt cttatcgccc cttcaagagc
     6421 taagccactg agagtgccgg agataagcgc cggatggggt agaaaccctt aagcctgtgt
     6481 cgcacagact taagggtttt cttatttctg aacgctgcac ttttttacct atctcttaaa
     6541 tagtcatttt aatacaactt tttctttttc atcacagcct taatgctcct tagataataa
     6601 ccattatcta acaatgagat acctaattct tagcgtgcct gttaacccac acatcagggt
     6661 ctatgcttat taaaagcagg caaaaagcat gttttacggt aaagcccctg cgtttgctga
     6721 gttgaactga taatcattat cactaacatg ctgttatacg ctgaaagcga tgaagtgagg
     6781 taaatcgatg gacatgcatt caggaacctt taacccacaa gatttcacct ggcaaggctt
     6841 aacgctgaca cccgcagcgg cgatacacat ccgtgagctg gtggcaaagc agccgggtat
     6901 ggtcggcgtg cgcttaggcg tgaagcaaac gggctgcgcg ggctttggct atgtgctcga
     6961 cagtgttagc gagccggaca aagacgatct gctgtttgaa cacgacggcg cgaagctgtt
     7021 tgtcccgctg caagcgatgc cgtttattga tggcacggaa gtcgatttcg ttcgtgaagg
     7081 acttaatcag atattcaaat ttcacaaccc taaagcccag aatgaatgtg gctgtggcga
     7141 aagctttggg gtataggcgg tactatgtct cgtaatactg aagcaactga cgatgtcaaa
     7201 acctggaccg gcggcccgct gaattataaa gaaggattct tcacccagtt agccaccgat
     7261 gagctggcaa aggggataaa cgaagaggtg gtgcgcgcaa tttcggcgaa gcgtaatgag
     7321 ccggagtgga tgctggagtt tcgtctaaac gcctatcgcg catagctgga gatggaagaa
     7381 ccgcactggt tgaaagcgca ctacgacaag ctgaattatc aggattacag ctactactca
     7441 gcaccatcgt gcggtaattg tgacgacact tgcgcgtctg aacctggcgc ggtgcagcaa
     7501 actggcgcga acgccttttt aagtaaagag gtggaggcgg cgtttgagca gttgggcgtt
     7561 cccgtgcggg aaggcaaaga ggtggcggtg gatgccattt tcgactctgt ttcggttgcc
     7621 actacttatc gcgaaaaact ggcggagcag ggaattattt tctgttcctt tggtgaggcg
     7681 atccacgatc acccggaact ggtgcgtaaa tatctcggca ccgtggtgcc ggggaatgac
     7741 aacttctttg ccgcgcttaa tgcggcggta gcctctgacg gtacgtttat ttatgtgcct
     7801 aaaggcgtgc gctgcccgat ggaactttcc acctattttc gcattaacgc ggaaaaaacc
     7861 gggcagtttg agcgcaccat tctggtggcc gacgaagaca gctacgtcag ctacattgaa
     7921 ggctgttccg ctccggtgcg tgacagctat cagttacacg cggcagtggt ggaagtcatc
     7981 atccataaaa acgccgaggt gaaatattcc acggtacaaa actggttccc tggcgataac
     8041 aacaccggcg gtattctcaa cttcgtcacc aagcgtgctt tgtgcgaagg cgaaaacagc
     8101 aaaatgtcat ggacgcaatc agaaaccggg tccgcgatta cgtggaaata tcccagctgc
     8161 attttgcgcg gcgataactc cattggtgag ttttactcag tggcgctgac cagcggtcat
     8221 cagcaagcgg ataccggcac caagatgatc cacatcggta aaaacaccaa atcgaccatt
     8281 atctcgaaag ggatctctgc cggacatagt cagaacagtt atcgcggctt agtgaaaatc
     8341 atgccgacgg caaccaatgc gcgcaatttc actcagtgcg actcaatgct gattggcgct
     8401 aattgtgggg cgcatacctt cccgtatgtc gaatgtcgca ataacagcgc acaactggag
     8461 cacgaggcaa cgacatcacg tattggtgaa gatcaactgt tttactgcct gcaacgcggg
     8521 atcagcgaag aagacgccat ctcgatgatt gttaacggtt tctgcaaaga cgtgttctca
     8581 gaactgccgc tggaatttgc cgttgaagca caaaaactcc tcgccatcag tcttgaacac
     8641 agcgtcggat aaggaataaa catgttaagt attaaagatt tacacgtcag cgtggaagat
     8701 aaagctatcc tgcgtggatt aagcctcgcc gttcgtcccg gcgaagttca cgccattatg
     8761 gggccaaacg gttcgggcaa aagtacctta tcggcaacgc ttgccgggcg cgaagattat
     8821 gaagtgacgg gcggcacggt tgagttcaaa ggcaaagatt tgcttgcact gtcgccggaa
     8881 gatcgtgcag gcgaaggcat ctttatggcc ttccagtatc cggtggagat tccaggcgtc
     8941 agtaaccagt ttttcctgca aacggcactt aatgcagtgc gcagctatcg cggccaggaa
     9001 acgctcgacc gctttgattt tcaggatttg atggaagaga aaatcgctct cctgaagatg
     9061 ccggaagatt tattaacccg ttcggtaaac gttggttttt ccggcggcga gaaaaagcgc
     9121 aacgatattt tgcaaatggc ggtgctggaa ccggagttat gcattcttga tgagtcggac
     9181 tccgggctgg atattgacgc attaaaagtg gtcgccgatg gcgtgaactc cctgcgtgat
     9241 ggcaagcgct cattcatcat tgttacgcac taccaacgca ttctcgacta catcaagcct
     9301 gattacgtcc atgtgctata tcagggacga attgtgaaat ccggcgattt cacgttggtc
     9361 aaacaactgg aggagcaggg ttatggctgg cttaccgaac agcagtaacg cgctgcaaca
     9421 gtggcatcac ttgtttgaag ctgaagggac aaaacgctcc ccgcaagcac agcagcattt
     9481 acaacaattg ctgcgtaccg gactgccgac acgtaaacat gaaaactgga aatatacgcc
     9541 gctggaaggg ctgaccaata gccagtttgt cagcattgcg ggggagatat ccccacagca
     9601 gcgtgatgcc ttagcgttaa cgttagacgc cgtgcggctg gtgtttgtcg atggacgtta
     9661 cgtgcccgcg ctgagcgatg caattgaagg cagcggatat gaagtgagca ttaacgacga
     9721 ccgtcagggg ttacccgacg ctattcaggc ggaagtgttt ctgcatttga cggaaagcct
     9781 ggcacaaagc gtgacgcata tcgccgtgaa gcgcggtcaa cggccggcaa agccattgct
     9841 gttaatgtat atcacccagg gcgtggcagg tgaagaggtg aacactgccc attaccggca
     9901 tcatctggat ctggcggaag gtgccgaagc aacggtgatc gaacattttg tcagccttaa
     9961 tgatgctcgt cattttaccg gggcacggtt cactatcaat gtcgcagcga acgcccactt
    10021 gcagcatatc aagctggcgt ttgaaaaccc gctcagtcac cactttgctc ataacgattt
    10081 gttgctggct gaggatgcca ccgcatttag ccatagtttc ctgctgggtg gcgcagtgtt
    10141 acgacacaac accagtacgc aactcaatgg cgaaaacagc acgctgcgga tcaatagcct
    10201 ggcgatgccg gtgaaaaacg aggtgtgtga tacccgtacc tggctggaac acaataaagg
    10261 tttttgtaac agccgacagt tgcacaaaac tatcgtcagc gacaaaggcc gcgcggtatt
    10321 taacggtttg atcaacgtcg cgcagcacgc catcaaaacg gatggtcaga tgaccaacaa
    10381 taatctgctg atgggcaaac tggcggaagt ggatacgaaa ccgctgctgg aaatctatgc
    10441 agatgatgtg aaatgcagcc acggcgcgac ggtggggcgt attgatgatg aacagatgat
    10501 catttacgcc tttgctgccg aactgacgga agcactgcgt gatgaggggc ttaaacagca
    10561 ggtgctggcc cgaatcggtc aacggctgcc aggaggtgca agatgacttt ttccgtcgac
    10621 aaagtgcggg ccgactttcc ggtgctttcg cgtgaggtaa acggtttgcc gctggcttat
    10681 ctcgacagcg ccgccagtgc acagaaaccg agccaggtga ttgacgccga ggccgagttt
    10741 tatcgtcatg gctacgcggc ggtgcatcgc ggtattcata ccttaagcgc ccaggcgacc
    10801 gagaaaatgg agaacgtgcg caagcgggca tcgctgttta ttaatgcccg ttcggcggaa
    10861 gagctggtgt tcgtccgcgg cacgacggaa gggatcaatc tggtcgccaa tagctggggc
    10921 aacagcaatg tgcgggcggg cgataacatc atcatcagtc agatggagca ccacgctaac
    10981 attgtcccct ggcagatgct ttgcgcacgc gttggcgcag agctgcgtgt gatccctctc
    11041 aaccccgacg gtacgctgca actggagacg ctgcatacgc tgtttgatga gaaaactcgc
    11101 ctgctggcaa ttactcatgt ctccaacgtg cttggcacag aaaatccact ggcgggaatg
    11161 atcacgcttg cgcaccagca tggcgcaaaa gtgctggtgg atggcgctca ggcggtgatg
    11221 catcatccgg tggatgttca ggcgctggat tgcgattttt acgtgttttc cgggcataaa
    11281 ctgtatggcc ccaccgggat tggcattctt tatgtcaaag aagccttgtt gcaggagatg
    11341 ccgccgtggg aagggggcgg ttctatgatc gccaccgtca gcctgagtga aggcactacc
    11401 tggaccaaag caccatggcg gtttgaagcc ggtacaccca ataccggggg catcattggt
    11461 cttggcgcgg cgctggaata tgtttcggtg ctggggctta ataacatagc cgagtatgaa
    11521 ctgaatctga tgcattacgc gctatcacag ctggaatctg taccgaatct cactctctat
    11581 ggcccacaaa acaggcttgg cgttattgct tttaatctcg gaaaacacca cgcctatgat
    11641 gttggcagtt ttctcgataa ttacggcatt gctgtgcgta ccggacatca ctgcgctatg
    11701 ccattaatgg cctattacaa cgtccctgcg atgtgtcggg cgtcgctggc catgtataac
    11761 actcatgaag aagtggatcg tctggtgacc ggcctgcaac gtattcaccg tctgctggga
    11821 taacagggag gcactatggc tttattgccg gataaagaaa aattgctgcg taatttttta
    11881 cgctgcgcca actgggaaga gaaatatctc tacattattg agctgggcca gcgtctgcca
    11941 gaattacgcg acgaagaccg aagcccacaa aatagcattc agggctgcca gaatcaggtg
    12001 tggattgtca tgcgccagaa tgcgcaggaa ttattgaatt gcagggcgac agcgatgcgg
    12061 cgattgtgaa agggcttatt gcggtcgtat ttattctcta cgatcagatg acgccgcagg
    12121 atattgtcaa tttcgatgtg cgtccgtggt ttgaaaaaat ggcgctcacc caacatctca
    12181 ccccatctcg ttcacaaggt ctggaagcga tgattcgcgc aattcgcgcc aaagccgctg
    12241 cacttagcta aactaaaggg acagctttca tccggttggc tcacattgcc ggatggtcaa
    12301 tgtttacact gacctgcaca ggagtgtttt ggtttcaggt gaacataagc gccatccgac
    12361 gtttcagcgt gagtctccgg caaatacagg aggtttacaa tgaaacgcga gtctttgctt
    12421 acactcacgc ttatcggcgc ttttagcgcc atccaggctg cctgggcggt tgattatccg
    12481 ctaccaccaa ccggaagccg actggttggg caaaatcaaa cgtatacggt gcaagaaggg
    12541 gataaaaacc ttcaggctat tgcccgacgt tttgatactg cggcaatgtt gatccttgaa
    12601 gccaatacac tatcgccccg gtgccaaaac ctggtacgac gataactatt ccttcacaac
    12661 tgttattacc tgatgcaccg cgtcagggga ttatcgttaa ccttgcagag ctgcgccttt
    12721 attattatcc gccgggagaa aatatcgtgc aggtttatcc gataggtatt ggcttgcagg
    12781 ggctggaaac gccggtgatg gaaacgcgtg tggggcagaa aatccctaat ccaacctgga
    12841 cgcctacggc aggcattcgt caacgttcgc tggagcgtgg cattaaatta ctgccagtcg
    12901 ttcctgccgg accaaataac ccgctaggac gttacgcact gcgcttcgcg catggtaatg
    12961 gcgaatacct cattcatggt accagtgcgc cggacagcgt cggtttgcgc gtcagttcgg
    13021 gctgtattcg catgaatgca ccggatatta aagccttatt ctccagcgtg cggacgggaa
    13081 cgccggtgaa agtgatcaac gaaccggtga aatattccgt ggagcctaac gggatgcgtt
    13141 atgttgaagt acatcgacca ctatcggcag aagaacagca gaacgttcag acaatgccat
    13201 acacactgcc agcaggcttt acgcaattta aagacaataa ggctgtagat cagaagttag
    13261 tcgataaagc gttgtatcgt cgggcagggt atccggtttc ggtgagcagt ggagcaactc
    13321 ccgcagccag caatgcgcct tcagtagagt cagcgcagaa tggtgaacca gagcaaggga
    13381 atatgttacg cgcgaggcag tagtggtaaa tagcagacaa aaaaaatggc gcacaatgtg
    13441 cgccattttt cacttcacag gtactattac ttgcggtatt tagtagccat gttgtccaga
    13501 cgctggttag cacgagctgc gtcatcttta gcagcctgaa cgtcggaacg cattgcgttc
    13561 acgtcgttgc tcagctggtc aactttagcg ttcagagtct gaacgtcaga agacagctga
    13621 tcgattttag cgttgctgga gcaacctgcc agcagagtag aacccaggat taccgcgccc
    13681 agtaccagtt tagtagcttt cattattaat accctctaga ttgagttaat ctccatgtag
    13741 cgttacaagt attacacaaa gttttttatg ttgagaatat ttttttgatg ggaaggcact
    13801 tatttttgat cgttcgctca aagaagcatc gaacgctggg ttttagataa aaaaattgag
    13861 agaaaacagg atgcttccat cggattcatc ttagataaag tgagattata tagtgaaatc
    13921 cgatttgatt ttttattgct tctggttatc gattaaataa aaaaagcgcc catcagggcg
    13981 cttcgatata caaattaatt cacaaaagca atattacagg acgtgaacag atgcggtgtt
    14041 agtagtgccg ctcggtacca gtgcaccaga aaccataact acaacgtcac ctttgtgtgc
    14101 cagaccgctc tgcagagcca gttctttacc cagacggtag aaatcatcag tagaagtgat
    14161 ctctttaacc agctgcggca caacgccttt gctcagtacc aactgatgag ccgttttttc
    14221 gttggtggtc agtgccagga tggtggcatc cgggaagtat ttacgtactg cgcgagcaga
    14281 tttaccgccc tgagtagcaa ccacgatcag cggagcatcc agtttttcag cagtttcaac
    14341 ggcaccacgg cataccgctt cggtaatgcg cagtttacgg ttgtcattgt tgaactcgag
    14401 acggctgttc atcacgcggt cggtacgttc gcagatggtc gccatgatag aaaccgcttc
    14461 cagcgggtat ttaccttttg cggattcacc agacagcatc actgcatcag taccgtcgag
    14521 gatggcgttt gcaacgtcac cggcttctgc gcgagtcggg cgtgggtttt tgatcatgga
    14581 atccagcatc tgggtcgcag tgataacgac tttacgtgca cggatacatt tttcgatcat
    14641 catcttctgg gcgaagataa cttcttctac cgggatttct acacccaggt cgccacgcgc
    14701 aaccatgatg ccgtcagagg cttcgaggat ttcgtcgaag ttgttgaggc cttcctggtt
    14761 ttcgattttg gagatgatgt ggatgttttc gccgccgtgc gctttcaggt gctcacggat
    14821 ttcgataacg tcagaacgct tacgaataaa ggaagcagca acaaagtcta cgccttgttc
    14881 gcaaccaaag atcaggtcct gtttgtcttt ttcagccagt gctggcagag caatggaaac
    14941 gccaggcagg ttcacacctt tgttttcgcc caggtcaccg ttgttcagca ctttacagat
    15001 aactttgtta ccttcaatgg cggtaacttc cataccgatc agaccatcgt caaccagtac
    15061 ggtgttgcca actgacaggt cagtagtgaa accttcatac gttaccgcaa ccatttcgct
    15121 gttgcctata acagatttat cagtggtgaa agtaaaggtc tgaccagctt tcagagaaac
    15181 gtcgttaccg ccttccagtt tcatggtgcg gatttccgga cctttggtat caagcaggat
    15241 agcggcggtt ttaccagttt tgctcatcac gttgcgcaga ttctgaatgc gctgaccgtg
    15301 ttctgcatag tcaccatgag agaagttcag acgcataacg ttcatgccag cgtccagcat
    15361 tttagctaac atctcttcag attcggtttt cggtccgatg gtgcaaacaa ttttggtctt
    15421 tttcatgaca gtcttagtct ttaagttgag aaggatggga gaaacttgct ttctgggcgc
    15481 actgccggaa agcgaatccg gtattacgaa agtggtggtg cctcgctcta aggataggtg
    15541 acatcgaaaa agcgtgcaga ggaatgtgtg cttgtgtctc agcccaacgt gagtgcctgt
    15601 ttttgagtcg ttgagttcta cagtccaaag tgctgaaacc attcaagagt caattggcgc
    15661 gcattatacg ctgaaattaa tccaaaagga aaacaaaaac agcgtttcaa aaaatataca
    15721 acttgttaga caataaattg ttatcaaaga tttaacgttc cagggaaaag gttacgcaaa
    15781 aacttcgctg tttgcgcaac gtctggtgcc aaagttgtca gtgtgaggat aagtgaaagt
    15841 tcatccggtg tataaatata tcatcgctca attgctacag ttaaaataat ttatcgcgtt
    15901 atttgtctga ttttgtttga tttttgttta attggttaga ttgatatatg ctgatagttg
    15961 gcatgataaa taggtataaa gaatgggaaa tcggacaaaa gaggatgaac tgtaccgaga
    16021 aatgtgcaga gttgtcggta aagttgtgct ggaaatgcgc gatctggggc aggaaccaaa
    16081 gcatattgtt atcgcaggcg tattacgtac agcattagcc aataaacgca ttcagcgcag
    16141 tgagctggat aagcaggcga tggaaaccgt cattaacgca ctggtaaaat gaccattcag
    16201 gatgaggcgg taagcttcat c
//
LOCUS       DAJVUN010000085        15797 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.085, whole genome shotgun sequence.
ACCESSION   DAJVUN010000085 DAJVUN010000000
VERSION     DAJVUN010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15797
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.085"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..2653)
                     /locus_tag="OQQ76_002325"
                     /pseudo
     CDS             complement(1..2653)
                     /locus_tag="OQQ76_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415720.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(3421..4512)
                     /gene="ychF"
                     /locus_tag="OQQ76_002326"
     CDS             complement(3421..4512)
                     /gene="ychF"
                     /locus_tag="OQQ76_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HCS1968802.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV
                     PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH
                     VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
                     ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY
                     LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL
                     LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ
                     GAKEAGKMRAEGKDYIVKDGDVMNFLFNV"
     gene            complement(4629..5213)
                     /gene="pth"
                     /locus_tag="OQQ76_002327"
     CDS             complement(4629..5213)
                     /gene="pth"
                     /locus_tag="OQQ76_002327"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1968803.1"
                     /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK
                     FFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV
                     AKLKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK
                     LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ"
     gene            5491..5769
                     /gene="ychH"
                     /locus_tag="OQQ76_002328"
     CDS             5491..5769
                     /gene="ychH"
                     /locus_tag="OQQ76_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress-induced protein YchH"
                     /protein_id="HCS1968804.1"
                     /translation="MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH
                     GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS"
     gene            complement(5824..7503)
                     /gene="dauA"
                     /locus_tag="OQQ76_002329"
     CDS             complement(5824..7503)
                     /gene="dauA"
                     /locus_tag="OQQ76_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HCS1968805.1"
                     /translation="MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAI
                     PLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL
                     AGLLVAALLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM
                     AHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCA
                     VMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIR
                     TLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATA
                     AIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE
                     AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP
                     VVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAF
                     QRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL"
     gene            complement(7628..8575)
                     /gene="prs"
                     /locus_tag="OQQ76_002330"
     CDS             complement(7628..8575)
                     /gene="prs"
                     /locus_tag="OQQ76_002330"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HCS1968806.1"
                     /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI
                     NENVRGGDIFIIQSTCAPTNDNLMELVVMVDSLRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN
                     LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
                     VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP
                     LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH"
     gene            complement(8726..9577)
                     /gene="ispE"
                     /locus_tag="OQQ76_002331"
     CDS             complement(8726..9577)
                     /gene="ispE"
                     /locus_tag="OQQ76_002331"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HCS1968807.1"
                     /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE
                     LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG
                     GLGGGSSNAATVLVALNHLWQCGLSMDELAAMGLTLGADVPVFVRGHAAFAEGVGEIL
                     TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR
                     FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLS
                     PLHRAML"
     gene            complement(9577..10200)
                     /gene="lolB"
                     /locus_tag="OQQ76_002332"
     CDS             complement(9577..10200)
                     /gene="lolB"
                     /locus_tag="OQQ76_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HCS1968808.1"
                     /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ
                     DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN
                     VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI
                     TYSQNGKNWKVVYGGYDTKTHPAMPANMELTDGGQRIKLKMDNWIVK"
     gene            10414..11670
                     /gene="hemA"
                     /locus_tag="OQQ76_002333"
     CDS             10414..11670
                     /gene="hemA"
                     /locus_tag="OQQ76_002333"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041689438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HCS1968809.1"
                     /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG
                     VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR
                     VASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGA
                     SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER
                     AQILADEVGAEVIALSEIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL
                     VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA
                     WLRAQSASETIREYRSQAEHVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP
                     TKSLQQAARDGDNERLNILRDSLGLE"
     gene            11712..12794
                     /gene="prfA"
                     /locus_tag="OQQ76_002334"
     CDS             11712..12794
                     /gene="prfA"
                     /locus_tag="OQQ76_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HCS1968810.1"
                     /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ
                     LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELRKAKEKSEQLEQQLQVLLLP
                     KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK
                     EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN
                     PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA
                     RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME
                     GKLDMLIEPIIQEHQADQLAALSEQE"
     gene            12794..13627
                     /gene="prmC"
                     /locus_tag="OQQ76_002335"
     CDS             12794..13627
                     /gene="prmC"
                     /locus_tag="OQQ76_002335"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCS1968811.1"
                     /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE
                     TQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQA
                     LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN
                     IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV
                     HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY
                     Q"
     gene            13624..14016
                     /locus_tag="OQQ76_002336"
     CDS             13624..14016
                     /locus_tag="OQQ76_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB family protein"
                     /protein_id="HCS1968812.1"
                     /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV
                     PPVVDTVLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ
                     ARIIAFPLALVVLYIIIKLATTKVPLLG"
     gene            14020..14829
                     /locus_tag="OQQ76_002337"
     CDS             14020..14829
                     /locus_tag="OQQ76_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HCS1968813.1"
                     /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL
                     AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLG
                     AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNI
                     SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI
                     RDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAHKHIVLH"
     gene            14865..15719
                     /gene="kdsA"
                     /locus_tag="OQQ76_002338"
     CDS             14865..15719
                     /gene="kdsA"
                     /locus_tag="OQQ76_002338"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HCS1968814.1"
                     /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV
                     TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA
                     QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
                     EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR
                     AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG
                     FEELDTSK"
BASE COUNT         3935 a         3936 c         4016 g         3910 t
ORIGIN      
        1 cacatagaca ttcagctggc tgttgcctgc ggtgatgtca taccccagta tcatgctggc
       61 acgccccagc agcgattcgt agtgattcag atgtatattg aggccattac tcgccttcat
      121 agccatctca ttctggtggc tgtatgtaag ctgggtttgc ggctctatat agaacccata
      181 accagtaggg gacaggttga acctctgccc ggcttccagg gagatgctca ttccattcgc
      241 agtgccgttg gcgttaacgc cgttgttatg actgtccagt acgtggaaac tatttttctg
      301 gcgcgatgct tttataacga gatcgctgta aaaaccgttt tgtgccatgt aactggcgta
      361 cattcccatg tagtctgaac gtgcggtacc gtcgcctccg ctatagtccg gcgatgcatg
      421 tgttgagcca atatacagac cgacatacaa cggcatttca tcagagagac gtttatcccc
      481 accaaactgg ataccgctgt aacccatgtc aaagccgctc agtttgccat tggcaaagga
      541 gtctaggctt cccccataac tgtgcaacca gatattaccg tctttactct gatttcgcag
      601 gtcacccatc cgttgcatca gcgtacggtt ttcaacatag ttcaataagt aaccgacatt
      661 gagataattg ccgccagcat ctgcggtcgt ggtgggttta ggcgtgggag cgggttcagg
      721 cgtaggatcg gggttgacta tgggaggctg agcgggagct ggtgtgggtt caggattagg
      781 agtcggttcc ggaactgtcc cggaagcgta aagctcccag ttagtgccat ttttacgcac
      841 atcgtacaga tatccccccc aactcaacct gagaagacgc gctgaacgag gccgcgccgt
      901 cagtggtttt taccactgtc agaacttcat ttcccgttgt ggcctcgctg ccctggttgc
      961 ggatagccaa tacgtgatta ccagcactac tcccgctgat attcaataaa tcccctttat
     1021 tattaacgcc attaccctcg ccaacaacat cagcacgcat aataaaggta ctgttaccgc
     1081 tcaggttctc tacgtttaat gtggcaaatg tgccggcagt tgacccgtgg ctggcaaaat
     1141 cgacagttga atggctcagc gccagcgtgt cgagattaga attacttgtt acgttccaga
     1201 cgctgttatt cattgcaacg tccagttttc cgccattgac attatcgctg agggaggaac
     1261 ctgtccaaac cgacccaggg tgcatatcca gattgattag cccacctttg gaaaaaatgc
     1321 taccgttgat aagcatacga cccgaggcgt tgatgcggct ggcggcataa ccatcgtcat
     1381 gttgcattgc aatggccatc tggtcgggtg tactcatatc aatgaccaga tcgctcgtga
     1441 ggtcgatctg gctgttggtc atggcataaa ttcccctggc tcctgccgcg ccggtgatag
     1501 ccaaactgtc tccggttatt ctaccgccgc tgagcgccca caaacccagc gccagactgc
     1561 cattacgatc aactgtaata tcggtatttt gcatgttgac aacagccgtt gccgtctggg
     1621 ccgaggcacc ataagaaccg ccggaaaaga tgctgtttcg ttgcgctgcc gtgccagaaa
     1681 aattgattgt cgcgtctgaa ccactggtga cgaggccacc gccctgcgcg gaagaaatat
     1741 ggctatctgc accgatagtg gttgtaccac cacgaacttc gacgccattg gccgcggctc
     1801 cagttacatc aacagtgagt gcattcgcgc taacctggcc aaagctccag aggccgtgtg
     1861 cattatcgcc attggtttta atggaactgt ttgttccgag atcgacaaca gagtttttct
     1921 gtacgcttat ccccatggcg ctgtagccct gaacatcgat tgtcaggtct gtagccgtaa
     1981 aacgcgcagc accattggcg ttattgccgt tgagaccacc gatataaaca cctgtacttc
     2041 catcggtcgt gattttactt ccgcttccaa gatcgacact ggtgccatag tcattgatgg
     2101 ttaggcctat accgttcgag ttttcaatgg tgaattgagt ggctgttagt gttgagctat
     2161 gcccaataat gatgccgtca tcgttactct taatggtgct gcctgtgcct aagtcagcat
     2221 gggtatagtc accaattaag ttaatgccga tggcagaggt ttgaccaaca acatctactg
     2281 tgagtcggtt agctgtcagg gagctgtttt tgccctgaat aatgattcct tttgcatatc
     2341 cagaggcgtc gttgacattg acggtgacat cattacccag gttgatattg ccaagcgtgt
     2401 ttcctgctgg ggtcattaca ccatagaggt ttcctgatgg atcggcggta tctcctgtaa
     2461 ttctgtcacc atcattaata gtaatattgg tgccatattg acttcctgta tcagcagcta
     2521 tcagcagggg ggaaaagata attgcattca aaccaatagc gccaaatttt atcagttgaa
     2581 ttgagggcga acggattttt aattcagcga gacgatctgc tttggtattc ccattgtgtt
     2641 gtttgatgcc cataccactc ctatatagta cccagactat gggtctatgg attttgtcat
     2701 tttgtttaaa tcaatgaata atatcctctt atcatcatga tatttgtatg gtgtaatcat
     2761 gatgagcttc tcagagaata attctctatt accgggcaaa atcaggacac aggaattaat
     2821 atatatttaa catccccctt acaaaggtga gtttatatcg acttattccc taagttgtcg
     2881 ttacttattc caattcgtta ctataaatat ggcaaaaata ttacaacaaa cagcggttaa
     2941 aaaatttggt gaagattttt tgtaataatc ctaattagtt atgggaattt cgcttgatgt
     3001 atctgcataa caaaaacaat atgcgccatt tttgcattac taataagaaa aagcaaaaaa
     3061 catcgatatt catttttggt caatgggttt tctggcctat cgttgttatt gtgctactgg
     3121 ttatcatttt catcttgcca gcatattgga gcgtgatcaa ttttgatcag ctgtgaaggt
     3181 ggctgatgtg tagtgataca aaaacttacg ttatatcact gctaatgaga tatccgtcat
     3241 ctgaacactt atgtctttaa ttattctcgt ggttcactat aggcaataag cacaaaagtg
     3301 taggatgtta caagaatgat taggactcgg tgaaatgaaa aatccacgca attgcgtgga
     3361 ttttatatac ttttgcgctc ttcatgagat ttagcgaaac ctcatgagac aataaattaa
     3421 ttagacgttg aaaaggaagt tcatcacatc gccatctttc acgatgtaat ctttaccttc
     3481 tgcacgcatt ttgcctgctt ctttcgcgcc ttgttcacct ttgtaagtga tgaaatcttc
     3541 aaacgagatg gtttgtgcac ggataaagcc tttttcaaaa tcagtatgga ttttgcccgc
     3601 tgcctgcggc gcggttgctc caaccggaat ggtccatgca cgcacttctt tcaccccagc
     3661 ggtgaagtaa gtttgcaggt tcagcagctt ataaccggca cggatcacac ggttcaggcc
     3721 cggctcttcc agcccaagct cctgcataaa ctcgtcacgt tcttcgtcgt ccagttcggc
     3781 aatgtctgct tcaacagcag cacaaaccgg aaccacaaca gaaccttctt tcgccgcgat
     3841 ttcacgcact tggtcaagat atgggttgtt ttcaaaaccg tcttcgttga cgttggcgat
     3901 gtacattgtt ggtttcagcg tcaggaagct caggtaacga atagccgctt tctcttcagc
     3961 gcttaaatcc agcgcgcgca gcatacctgc attttccaac tggggcaggc atttttccag
     4021 gaccgccagc tcagctttcg cgtctttatc gccacctttg gctttcttct gtacgcgatg
     4081 aatcgcacgt tcgcaggtgt cgaggtctgc cagcgccagt tcggtgttga taacttcaat
     4141 atcgtcagcc gggttaactt tgccggaaac gtgaatgatg ttgtcatttt caaagcagcg
     4201 aacaacgtga ccgatcgctt cggtttcacg gatgttggtc aggaactggt tacccagacc
     4261 ttcgcctttc gatgcgcctt ttaccagacc ggcgatatcg acaaattcca tggtcgtggg
     4321 aagcgtacgc tgcggtttta cgatttcagc cagttgatcc aggcgaggat caggcattgg
     4381 tacgacgcct gtgttcggct caatggtgca gaatggaaag ttggccgctt caataccggc
     4441 tttggtcagc gcgttgaaca gggtagattt cccgacgttg ggcaaaccga cgataccgca
     4501 tttgaatccc atgatttaaa tcaccttaat atcttaataa tcaacctgtt attgctaaca
     4561 gattgcagaa atggaaataa ctttgcctat tatacacggc actcggcaaa aatgccgcag
     4621 acaacgactt attgcgcttt aaaggcgtgc aatcggttcg ttgctttggt caagccatct
     4681 gtaaaccaca tttcagtaca acgcgccgct tcgtcaatgg cttcatcaat taacttctgt
     4741 tcactaacag gcggtttgcc taacacaaaa ccgacaactt tatttttatc gcccggatga
     4801 ccgattccga tgcgtaaacg gtgaaagtta gggttattac ccaatttact gatgatgtct
     4861 ttcagtccat tgtgaccacc atggccaccg cccaatttta atttggcgac gccaggaggc
     4921 agatccagtt cgtcgtgggc caccagaatt tcgtccggat taatgcggaa aaaactggcc
     4981 atcgccgcaa cggctttgcc gctgagattc ataaatgtag tcgggactaa caggcggaca
     5041 tcttcgcctc caagagtgac tcgcgaagta taaccaaaga atttagcctc ttcgcgcagc
     5101 ggagcgcgca aacgctctgc cagtaagtca acgaaccagg caccagcatt atgtcgcgtt
     5161 gcggcgtatt cagcaccggg gttcgccagg ccgacaatca atttaatcgt cacgtttttt
     5221 tgtcctgagt gtgtacataa ctggcgcgta gtttactggt tgcggccccg cttgacaaaa
     5281 aactgcgtat caaatgcaga taacgtaata attgcctgag tggactatta gaaagtcaag
     5341 gtgttcaggc gtttatttgt aaagttttgt tgaaataagg gttgtaattg tgatcacgcc
     5401 cgcacataac ccacagggtg ttgtctatac tttacacata aggaagaggg gtattccctg
     5461 ttacaaccca gaaagttccg gaggtgacat atgaaacgca aaaacgcttc gttactcggt
     5521 aacgtgctca tggggttggg tctggtggta atggtggtcg gcgtggggta ttcaatcctc
     5581 aaccagttac cacagtttaa tatgccccag tatttcgcac atggtgcagt gctaagtatt
     5641 ttcgtcggtg ccattctctg gctggcgggt gcccgtgttg gcgggcatga acaggtgtgc
     5701 gaccgttact ggtgggttcg ccactatgac aaacgttgcc gccgtagcga taatcgccgt
     5761 catagctaac aaataatgca gtttgctgac cagtcagttt gcgctgactg gtcaatctcg
     5821 tacttataaa tccgccatcg ccgcgcgacg attcgggaag aacgcgaggc gtcccgggat
     5881 cggttgaatg cctgcgcgag ccatagtgcg cagtggctgg aattccacgt tgcacacgcg
     5941 cagttcacat ccttcgggca gacgcttcac aaaacgctgg aacgcatcaa gaccaccagc
     6001 atcaagtacc ggaacggcat cccacttcag aatcacaatc cgtttgcctt caagacgtga
     6061 ctccaggtcc gtgaacaagc cttcagcagc agcaaaaaac agcgggccaa taacgcgcag
     6121 taccagaaca tcgtctggaa catctacgac taccggtgcc aggcgagtca tacgtgcgat
     6181 acgacgcata aacagcagcg atgccagcac gatccccacg ctgatggcaa taaccatatc
     6241 aaacagcacg gtcagcgaca tgcacagcag catgacaatg atgtcatctt tcggtgcatg
     6301 acgcagcaag tcgaccactt tatgcgcttc actcatgttc cacgccacca tcaacagcag
     6361 ggctgccata gcggaaagcg gcagccagga gagcagcggt gccagtacca gcagggcaag
     6421 aataaccaga atagagtgga tcaccgctga gataggggaa gttgccccgg cacggacgtt
     6481 agcggcagaa cgcgcgatgg cagctgtagc ggtaatacca ccaaagaatg gagcgataat
     6541 attccccagt ccctgtccaa ccagttcgct gttcgccttg tgtttcgtcc cggtcatacc
     6601 atccagtacc acggcgcaga gcagagattc gattgcgccg agcattgcca ttgagaatgc
     6661 cgcaggcagc agtgtgcgaa tagaatccca ggttagcgtg aattctgaat taggcagatc
     6721 ccacggcagc accagttgcg gcagcagttg cggaataccg ttaccctgag aaccatcggc
     6781 caggacgtag tggaattgcg aaccgatggt agcaacatgt ccgccgagca ggttaacaat
     6841 ccccatcacc gcgcaaccag ccagcaaggc cggaaggtga ccgggtaaac gaatgcccag
     6901 acgcggccaa aaaacaagaa tacctagcgt cacaatgcca atggcagcat cacccacatt
     6961 aatggtcggc agcgccataa ataatgcgcc gactttttgt agataatgtt ccgggacatg
     7021 ggccatttgc agaccgagaa aatctttaat ctgcatggta ccgatggtga tcccgatacc
     7081 cgaggtgaaa cctaaggtga cggaaaccgg aatatactca atcaggcgac caaagcgtgc
     7141 cagacccatc agaatcaaaa agatccccga cagcaaggcc gcaaccagca gtcctgccag
     7201 tccaaactgt tgcgacacgg gatagagaat taccacaaat gccgcagtcg gaccggaaac
     7261 gctaaagcgt gacccacccg tcagagcaat gacaatcccc gcaacagctg cggtatataa
     7321 accgtactgg ggtgccacac cactaccaat agccaacgcc atcgccagcg ggatagcaat
     7381 aatcccgacg gttatcccgg caatcaggtc acgggtaaac cgtgcggcag tatatttttc
     7441 tttccagcaa gcgtcgatca gagcgcggaa aggcatcaca tgtgaggaaa atattttgtt
     7501 cacaataatg tttcatccgt gagcgcatca tctgtcaact aaatggcagg tgaaggaggc
     7561 ataggtcata caaatggata ttacagacaa aaaaacccgc cgcagcgggt ctttgagccg
     7621 ggttcgatta gtgttcgaac atggcagaga tcgattcttc gttgctgata cgacgaatcg
     7681 cttcggccag catacctgac agggtcagag tacgcacgtt cggcagtgat ttgatttcat
     7741 cgctcagcgg aatggtatcg cagacaacga cttcatcaat tacagagtta cgcaggttgt
     7801 tcgccgcgtt gccagagaag atcgggtgag tcgcgtacgc aaatacacgt ttagcaccac
     7861 gttctttcag agcttcagca gctttacaca gcgtaccgcc agtgtcgatc atatcatcga
     7921 ccagtacgca gtcacgacct gcaacgtcac cgatgatatg catcacctgg gaaacgttcg
     7981 cacgcggacg acgtttgtcg atgattgcca tatcggtatc gttcagcagc ttagcgatag
     8041 cgcgggcacg cacaacgccg ccgatgtccg gagaaaccac aattgggtta tccagattca
     8101 gctgcagcat gtcttccagc aggatcgggc taccaaatac gttatcaacc ggaacgtcga
     8161 agaaaccctg aatctgttca gcgtgcagat ccactgtcag cacacggtca acaccgacgc
     8221 tggagaggaa gtctgcaacc actttcgcag tgattggtac acgagcggaa cggacgcgac
     8281 ggtcctggcg cgcatagcca aagtagggga taacagcggt gatacgacct gcggaagcac
     8341 gacgcaggga atcaaccata acgactaatt ccatcaggtt gtcgttagta ggggcacaag
     8401 tggactggat gatgaaaata tcaccaccgc gtacattttc attaatttgt acgctgactt
     8461 cgccatcgct aaagcgacct acagcggcgt cgccgagtga agtgtacagg cggttggcaa
     8521 tacgttgtgc tagttccggg gtggcgttac cagcaaaaag cttcatatca ggcacgagaa
     8581 gaacctcagg catgcgtcca ttggtggaaa gaatctgccg aaaactgtgc gggccaggca
     8641 tgatcctttc caggcggtgt attaaagagc gcgatgcaac gtctggaaca aggtgacgtt
     8701 gtcaccgaaa ctcagcttgc ccggcttaaa gcatggctct gtgcaatggg gaaagattaa
     8761 cgcctttcgc cacaaagcca ttgagccatt ccggggcttg ctctagcacc tggcgggctt
     8821 cagactctgt atcaaattca gcaaagacac aggcccctgt cccagtcagg cgcgacgggg
     8881 cgtattctaa cagccaggaa agcaccgcat caacctcgcg aaaacgtttt cttgcgataa
     8941 cctcgcaatc attgctgaat tcacatttta gcaacgtttc tattgacctt tttggcgtat
     9001 tgcgcgggag ttcaggatct ttaaaaatca ccggagtcgg aatacttaca ccagggtgcg
     9061 ccaccagata ccacttctct ggcggatcca ccggcgttag tatttcacca acgccttcgg
     9121 caaacgcggc atgcccccga acaaagacag gaacatctgc gcccagcgtc agccccattg
     9181 ccgccagctc atccatgctt agcccgcatt gccagagatg atttaatgcc accaggaccg
     9241 tcgcggcatt ggatgaacca ccgccgagac cgccgcccat cggcaaacgc ttgtcaatgc
     9301 tgatattcgc accgcttccc gtcggaagac gcccgctgtc tgccgcagtt ttcatcaaca
     9361 atcgcgctgc gcgaacgatc aggttatctt catgttccac gccttcaacg ggcgttaaca
     9421 gacgaatatc cccatcgtca cgaagctcaa tgctgatggt gtcgccgtaa tcaagaaact
     9481 gaaacagcgt ttgcagcgtg tggtaaccat ccgcacgctg accggtaatg tataaaaaca
     9541 gattaagttt tgccggagag ggccactgtg tccgcattat ttcactatcc agttatccat
     9601 ttttaacttg atgcgttgac caccgtcggt gagttccata ttggctggca tcgcaggatg
     9661 cgttttggtg tcataaccac cataaacaac cttccagttt ttgccattct ggctgtaggt
     9721 aatttcgctc aggcggtact ggtcgtccag tttgtagtcg gttgcatcac ccggtaaacc
     9781 taaaatccac tggcgcaagc tgttgagcgg aattggcatt ccggtcaatt tgccaatcat
     9841 ctcttcggcg tcatcggcgg tataacgctg acctttattg tcgactaact gcacgttacc
     9901 cggttgagca ttcagctcca gttccgtgct gcccaatggg ttagtgagca gcagacggta
     9961 gcgatcctgg ccggtttgct gccagaaaaa gcgggcgtac actttttgtt ggtcagaaat
    10021 ataagcgaac gcgccgcgag tctgatactg attaagattg cgcacgtctt gctgatgctg
    10081 acgccattgt ggcgaatccg ggcttttgcc aggacctttg ggcgtggtaa cggaacaggc
    10141 agtgagcaca agagcagcca gcggtagcag gcggataaga cgaaaatcgg gcaggggcat
    10201 agtgatgaca agtccttgag atacgttgca gttataaccc ttaatgctag cgttaccgtc
    10261 cgctatcgtc tatgttcaag ttgtcttaat tgccagaatc taacggcttt cggcaattac
    10321 tccaaaaggg ggcgctctct tttattgatc ttacgcatcc tgtatgatgc aagcagacta
    10381 accctatcaa cgttggtatt atttcccgca gacatgaccc ttttagcact cggtatcaac
    10441 cataaaacgg cacctgtatc gctgcgagaa cgtgtatcgt tttcgccgga taagctcgat
    10501 caggcgcttg acagcctgct tgcgcagccg atggtgcagg gcggcgtggt gctgtcgacg
    10561 tgcaaccgca cggaacttta tcttagcgtt gaagagcagg ataacctgca agaggcgtta
    10621 atccgctggc tttgcgatta tcacaatctt aatgaagaag atctgcgtaa aagcctctac
    10681 tggcatcagg ataacgacgc ggttagccat ttaatgcgtg ttgccagcgg cctggattca
    10741 ctggttcttg gggagccgca gatcctcggt caggttaaaa aagcgtttgc cgattcgcaa
    10801 aaaggtcata tgaaggccag cgaactggaa cgcatgttcc agaaatcttt ctctgtagcg
    10861 aaacgcgttc gcactgaaac agatatcggt gccagtgctg tgtctgtcgc ttttgcggct
    10921 tgtacgctgg cgcggcagat ctttgaatcg ctctctacgg tcacagtgtt gctggtaggc
    10981 gcgggcgaaa ccatcgagct ggtagcgcgt catctgcgcg aacataaagt acagaagatg
    11041 attatcgcca accgcactcg cgaacgtgcc caaattctgg cagatgaagt tggcgcggaa
    11101 gtgattgccc tgagtgagat cgacgaacgt ctgcgcgaag ccgatatcat catcagttcc
    11161 accgccagcc cgttaccgat tatcgggaaa ggcatggtgg agcgcgcatt aaaaagtcgt
    11221 cgtaaccaac caatgctgtt ggtggatatt gccgttccgc gcgatgttga gccggaagtt
    11281 ggcaaactgg cgaatgctta tctttatagt gtggacgatc tgcaaagcat catttcgcac
    11341 aacctggcgc agcgtaaagc cgcagcggtt gaggcggaaa ctattgtcgc tcaggaaacc
    11401 agcgaattta tggcgtggct gcgagcacaa agcgccagcg aaaccattcg cgagtatcgc
    11461 agccaggcag agcacgttcg cgatgagtta accgccaaag cgttagcggc ccttgagcag
    11521 ggcggcgacg cgcaagccat tatgcaggat ctggcatgga aactgactaa ccgcttgatc
    11581 catgcgccaa cgaaatcact tcaacaggcc gcccgtgacg gggataacga acgcctgaat
    11641 attctgcgcg acagcctcgg gctggagtag cagtacatca ttttcttttt ttacagggtg
    11701 catttacgcc tatgaagcct tctatcgttg ccaaactgga agccctgcat gaacgccatg
    11761 aagaagttca ggcgttgctg ggtgacgcgc aaactatcgc cgaccaggaa cgttttcgcg
    11821 cattatcacg cgaatatgcg cagttaagtg atgtttcgcg ctgttttacc gactggcaac
    11881 aggttcagga agatatcgaa accgcacaga tgatgctcga tgatcctgaa atgcgtgaga
    11941 tggcgcagga tgaactgcgc aaagctaaag aaaaaagcga gcaactggaa cagcaattac
    12001 aggttctgtt actgccaaaa gatcctgatg acgaacgtaa cgccttcctc gaagtccgag
    12061 ccggaaccgg cggcgacgaa gcggcgctgt tcgcaggcga tctgttccgt atgtacagcc
    12121 gttacgccga agcccgccgc tggcgggtag aaatcatgag cgccagcgag ggtgaacatg
    12181 gtggttataa agagatcatc gccaaaatta gcggtgatgg tgtgtatggt cgtctgaaat
    12241 ttgaatctgg cggtcatcgc gtgcagcgtg ttcctgctac ggaatcgcag ggtcgtattc
    12301 atacttctgc ttgtaccgtt gcggtaatgc cagaactgcc tgacgcagaa ctgccggaca
    12361 tcaacccagc agatttacgc attgatactt tccgctcgtc aggggcgggt ggtcagcacg
    12421 ttaataccac cgattcggca attcgtatta ctcacttgcc gaccgggatt gttgttgaat
    12481 gtcaggatga acgttcacaa cataaaaaca aagcgaaggc gctttcagtg ctcggtgctc
    12541 gcatccacgc tgctgaaatg gcaaaacgcc aacaggccga agcgtctacc cgtcgtaacc
    12601 tgctggggag tggcgatcgc agcgaccgta accgtactta caatttcccg caggggcgcg
    12661 ttaccgatca ccgcatcaac ctgacgctct accgcctgga tgaagtgatg gaaggtaagc
    12721 tggatatgct gattgaaccg attatccagg aacatcaggc cgaccaactg gcggcgttgt
    12781 ccgagcagga ataatggaat atcaacactg gttacgtgaa gcaataagcc aacttcaggc
    12841 gagcgaaagc ccgcggcgtg atgctgaaat cctgctggag catgttaccg gcagagggcg
    12901 tacttttatt ctcgcctttg gtgaaacgca gctgactgac gaacaatgtc agcaacttga
    12961 tgcgctactg acacgtcgtc gcgatggtga acccattgct catttaaccg gggtgcgaga
    13021 attctggtcg ttgccgttat ttgtttcgcc agcgacctta attccgcgcc cggatacgga
    13081 gtgtctggtg gagcaggcac tggcgcggtt gcctgaacaa ccttgccgta ttcttgatct
    13141 cgggacgggt accggggcga ttgcgcttgc gctggctagc gagcgcccgg actgcgaaat
    13201 tatcgctgta gatcgtatgc ctgatgctgt ctccctggca caacgtaatg cccagcatct
    13261 ggcgatcaaa aatatccaca ttctgcaaag cgactggttt agcgcgctag ccgggcagca
    13321 gtttgcgatg attgtcagca atccgccgta tattgacgag caggacccac atcttcaaca
    13381 aggcgatgtc cgctttgagc cgctcactgc gctggttgcg gcagacagtg gaatggcaga
    13441 catcgtgcat atcatcgaac agtcgcgtaa cgcgctggta tccggcggct ttctgcttct
    13501 ggaacatggc tggcagcagg gcgaagcggt gcgacaagca tttatcctcg cggggtatca
    13561 tgacgtcgaa acctgccgtg actatggtga taacgagcgc gtaacgctcg gccgctatta
    13621 tcaatgacaa gtttttctac actgcttagt gttcatctta ttagtatcgc gctttctgtt
    13681 gggctattaa ccttacgttt ctggctacgt tatcagaagc atccacaggc atttgctcgc
    13741 tggacgcgca ttgtgccgcc ggttgtcgat acggtgttat tgttaagcgg cattgcgttg
    13801 atggctaaag cgcacatcct gccattttcc gggcaggcac agtggctgac tgaaaagctg
    13861 tttggagtta tcatttatat cgttttgggt tttattgcac tcgattatcg tcgtatgcac
    13921 agtcagcagg cgcgcattat tgccttcccg ctggcgttgg tggtgctgta catcatcatt
    13981 aaactcgcca ccacaaaagt accgttactg gggtaagtca tgagatcgtt agctgatttc
    14041 gaatttaata aagcgccatt gtgcgaaggc atgatcctgg cttgcgaagc aatccgccgc
    14101 gattttccct cgcaagatgt ttacgacgaa ctggagcgtc tcgttagtct ggcgaaggaa
    14161 gaaatcagcc agcttctgcc tttagaagag cagctggaaa aactgatcgc gctgttttac
    14221 ggcgactggg gatttaaagc ctcacgcggc gtttatcgtc tttccgatgc attatggctg
    14281 gaccaggtgt taaagaatcg acagggcagt gcggtatcat taggtgcggt tttattatgg
    14341 gtcgcgaatc gtctcgattt gccgctgctg ccggtgattt tccctacgca gctgatattg
    14401 cgcattgaat gtccggatgg cgaaatttgg ctgattaatc cttttaacgg tgaatcgtta
    14461 agcgaacata tgctggacgt atggttaaag ggaaatatca gcccgtcggc ggaactgttt
    14521 tatgaagacc ttgatgaagc tgataacatt gaggtaatcc gcaaattgct ggatacactc
    14581 aaagcctcgt tgatggaaga aaatcagatg gagctggcgt tacgcaccag cgaagcttta
    14641 ttacaattca accctgaaga tccctatgaa attcgcgatc gcgggttgat ttatgcgcaa
    14701 ctggattgcg aacacgttgc gttgaacgat ttaagttatt tcgttgaaca gtgtccggaa
    14761 gacccgatca gcgaaatgat ccgtgcgcaa ataaataaca tcgcgcataa acatattgtg
    14821 ctgcattaat taatcgacat tttactcaag attaaggcga tcctatgaaa caaaaagtgg
    14881 ttagcattgg cgacatcaac gtagcaaatg acctgccgtt cgtactgttt ggcggtatga
    14941 acgtgctgga atctcgcgat ctggcgatgc gcatttgcga gcactacgta actgtgaccc
    15001 agaaactggg tatcccttac gtgttcaaag cctcttttga caaagccaac cgctcctcca
    15061 tccactctta tcgtggaccg ggcctggaag aagggatgaa aatcttccag gagttgaagc
    15121 agacttttgg cgtgaaaatt atcaccgacg ttcacgaacc aagtcaggca cagcccgttg
    15181 ctgatgtcgt ggatgtgatt cagttgccgg cgtttcttgc tcgccagact gacctggttg
    15241 aagccatggc gaaaaccggt gcggtaatta acgtcaagaa accacagttt gtcagcccgg
    15301 gacagatggg taatatcgtt gataaattca aagaaggcgg caacgaaaaa gtgattcttt
    15361 gcgatcgtgg tgctaacttc ggctatgaca acctggttgt cgatatgctg ggcttcagca
    15421 ttatgaagaa agtgtctggt aactcgccgg tgattttcga cgtgacccac gcactgcaat
    15481 gccgcgatcc gtttggcgca gcttccggtg gtcgtcgtgc tcaggtggct gagctggcac
    15541 gagccggtat ggcggtaggt ctggcggggc tgtttattga agcgcatccg gatccggaac
    15601 atgcgaaatg tgatggtcca tccgcgctgc cgctggctaa actggaaccg ttcctcaagc
    15661 agatgaaagc gattgatgat ctggtgaaag gtttcgaaga actggatacc agcaagtaat
    15721 cttttttgct tgaaaaataa agtcttagcg ttctgcgtta agactttttt catgggtgcc
    15781 agatacaaaa aaggccg
//
LOCUS       DAJVUN010000086        15709 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.086, whole genome shotgun sequence.
ACCESSION   DAJVUN010000086 DAJVUN010000000
VERSION     DAJVUN010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15709
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.086"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..184)
                     /locus_tag="OQQ76_002339"
     CDS             complement(<1..184)
                     /locus_tag="OQQ76_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968815.1"
                     /translation="MKNIKLLGSAMLVSLALFSQNSLAKEYKIGASLLTQQHPFYIDL
                     ANAMKEEAKKDNVNLSV"
     gene            complement(220..1074)
                     /locus_tag="OQQ76_002340"
     CDS             complement(220..1074)
                     /locus_tag="OQQ76_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000275530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose bisphosphate family class II aldolase"
                     /protein_id="HCS1968816.1"
                     /translation="MYIISSKNMLKKAQSEGYAVPAFNIHNLETLQVVVESAAQLRSP
                     VMLAGTPGTYRYGGVGSLISLVQSLAREYNLPLVLHLDHHEESDDIFNKVRAGIRSVM
                     IDGSHLPFEDNIARVQEVTTFCHRFDVSVEVELGRLGGQEDDLLVDEKDSAYTSPAAA
                     AEFVQRTQIDSLAVAIGTAHGLYAHEPRLDFVRLEQIRQRVEIPLVLHGASGLSEQDV
                     QHCIRRGICKVNVATELKIAFADALKGYFYNNPAANDPRHYMQPAKAAMKEVVTRIIG
                     VCGSEGKI"
     gene            1416..2246
                     /locus_tag="OQQ76_002341"
     CDS             1416..2246
                     /locus_tag="OQQ76_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1968817.1"
                     /translation="MKSVNVPRKSSNLLKRRLKIAEIVAAQGEIKVDDLSAQLGVSGV
                     TIRGDLSYLEQQGYLKRSFGGAIATPLSSEPEAIQPIAPLSLAQQMEIARHCARLIRD
                     RDTLFLGHGTICRKIIPLLSEVKKLRLITNDPEHALLANQFIDGEIILAGSEMLRPDT
                     ALAGKPLEQALQHFTITHSILEINHLDADGTLNINVPRLAAAWQLCFDHAQNKTVIVA
                     ADPAPSTAAIGHLHQAENVIVSRSINEQYQQQLQSADFVILYTSNECFTWSNRERLQE
                     "
     gene            2278..3213
                     /locus_tag="OQQ76_002342"
     CDS             2278..3213
                     /locus_tag="OQQ76_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCS1968818.1"
                     /translation="MGELLAEFLSRNPHQKFTQPGEFIGPFPSGAPAIFAAQVAKLSH
                     RAIFFGCVGNDDFGRLIIERLRHEGVITDGIHVMNNAVTGTAFVSYQNPQQRDFVFNI
                     PNSACGLFTAEHIDKDLLKQCNHLHIVGSSLFSFRMIDVMRKAITTIKSAGGTVSFDP
                     NIRKEMLSIPEMAQALDYLIEYTDIFIPSESELPFFARHKNLSEEQIVSDLLHGGVKH
                     VAIKRAQRGASYYKLKNGTLHAQHVTGHDIEIIDPTDAGDCFGATFITLFLSGFPAHK
                     ALQYANASGALAVMRQGPMEGISSLADIEDFLQQH"
     gene            3306..3548
                     /locus_tag="OQQ76_002343"
     CDS             3306..3548
                     /locus_tag="OQQ76_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdT family protein"
                     /protein_id="HCS1968819.1"
                     /translation="MDTRFVQAHKEARWALGLTLLYLAVWLAAAYLPDVAPGFTGFPR
                     WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA"
     gene            3538..4989
                     /gene="panF"
                     /locus_tag="OQQ76_002344"
     CDS             3538..4989
                     /gene="panF"
                     /locus_tag="OQQ76_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HCS1968820.1"
                     /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG
                     GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA
                     RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET
                     GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVETLQ
                     TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG
                     TIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS
                     TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI
                     IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH
                     PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK"
     gene            5001..5882
                     /gene="prmA"
                     /locus_tag="OQQ76_002345"
     CDS             5001..5882
                     /gene="prmA"
                     /locus_tag="OQQ76_002345"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HCS1968821.1"
                     /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL
                     PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN
                     FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK
                     TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ
                     PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL
                     DPVVEKEEWCRITGRKN"
     gene            6211..7176
                     /gene="dusB"
                     /locus_tag="OQQ76_002346"
     CDS             6211..7176
                     /gene="dusB"
                     /locus_tag="OQQ76_002346"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HCS1968822.1"
                     /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS
                     NPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPA
                     KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED
                     CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGA
                     DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY
                     RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA"
     gene            7202..7498
                     /gene="fis"
                     /locus_tag="OQQ76_002347"
     CDS             7202..7498
                     /gene="fis"
                     /locus_tag="OQQ76_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HCS1968823.1"
                     /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG
                     QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN"
     gene            7584..8468
                     /gene="yhdJ"
                     /locus_tag="OQQ76_002348"
     CDS             7584..8468
                     /gene="yhdJ"
                     /locus_tag="OQQ76_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HCS1968824.1"
                     /translation="MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYN
                     IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF
                     TIKSRIVWSYDSSGVQAKKHYGSMYDPILMMVKDAKNYTFNGDAILVEAKTGSQRALI
                     DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIV
                     LDPFAGSFTTGAVAVSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG
                     NLSKRSRLSEVDPDLIAK"
     gene            8552..8731
                     /locus_tag="OQQ76_002349"
     CDS             8552..8731
                     /locus_tag="OQQ76_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2556 family protein"
                     /protein_id="HCS1968825.1"
                     /translation="MIRKYWWLVVFAVFVFLFDTLLMQWIELLTTETDKCRNMNSVNP
                     LKLVNCDELNFQDRM"
     gene            complement(8734..9396)
                     /gene="acrS"
                     /locus_tag="OQQ76_002350"
     CDS             complement(8734..9396)
                     /gene="acrS"
                     /locus_tag="OQQ76_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrS"
                     /protein_id="HCS1968826.1"
                     /translation="MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVT
                     RGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAK
                     IPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLD
                     VVMIIINGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELS
                     VM"
     gene            9795..10952
                     /gene="acrE"
                     /locus_tag="OQQ76_002351"
     CDS             9795..10952
                     /gene="acrE"
                     /locus_tag="OQQ76_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrE"
                     /protein_id="HCS1968827.1"
                     /translation="MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIV
                     KTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQA
                     NYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAK
                     ATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQS
                     SNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLR
                     AVFPNPQHTLLPGMYVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEAR
                     PVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK"
     gene            10964..14068
                     /gene="acrF"
                     /locus_tag="OQQ76_002352"
                     /pseudo
     CDS             10964..14068
                     /gene="acrF"
                     /locus_tag="OQQ76_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417732.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit AcrF"
     gene            14321..14542
                     /locus_tag="OQQ76_002353"
     CDS             14321..14542
                     /locus_tag="OQQ76_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968828.1"
                     /translation="MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTT
                     QDNWETAGAIAGGAAAVAGLTMGIIALSK"
     gene            14973..>15709
                     /locus_tag="OQQ76_002354"
     CDS             14973..>15709
                     /locus_tag="OQQ76_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1968829.1"
                     /translation="MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDG
                     LPGFSYADADGKFSGIDVDVCRSVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLS
                     RNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
                     VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVL
                     PEVISKEPLGPVVRRGDDEWFSIVRWTL"
BASE COUNT         3947 a         3746 c         3891 g         4125 t
ORIGIN      
        1 agacacttaa attgacattg tctttttttg cctcttcttt catggcattc gcaagatcaa
       61 tatagaaagg atgttgctgt gttaataatg acgcaccaat tttatactct tttgccaacg
      121 aattttgcga gaacaatgcc aggctcacca acatagctga accaagtaat ttaatatttt
      181 tcataaacaa tcctcattgt ttttgtaggg tacaacgtct taaatttttc cttcactacc
      241 acagacacca ataatacgag ttacgacttc tttcatggcg gcctttgcgg gctgcatata
      301 gtggcgtgga tcatttgccg caggattgtt gtagaaatat ccttttaacg catcggcaaa
      361 cgcaattttc aattctgtcg cgacattcac tttacaaata ccgcggcgaa tacagtgctg
      421 aacgtcctgt tctgataagc ccgaagcacc atgcaacacc agtggaatct ccactcgctg
      481 acgaatctgt tccagccgca caaaatccag tcgtggttca tgcgcatata aaccatgtgc
      541 tgtgccgatt gctacggcca gggagtcaat ttgggtacgt tgaacaaact ctgcagctgc
      601 ggctggtgag gtataagcgg aatctttttc atccaccagc agatcgtcct cctggccgcc
      661 aagacgccct agctcgacct caacgctaac atcaaagcga tggcaaaagg tggtaacttc
      721 ttgcactcgc gcaatgttgt cttcaaatgg caaatgggag ccatcaatca tgacagaacg
      781 gatccctgcg cgaaccttgt taaaaatgtc atcactctct tcatgatggt cgagatgcag
      841 gactaacggc aggttgtact cgcgagccag cgattgtact aacgaaatta aacttcccac
      901 gccaccataa cgataagtac cgggtgttcc cgccagcata acgggagagc gaagttgtgc
      961 agcgctctca acaactacct gtaaagtttc aaggttatga atgttgaaag cggggacggc
     1021 atatccctct gactgggctt ttttcagcat gtttttgctt gaaatgatgt acatcgcagc
     1081 tcctgttatt tgtcgttcgc cttacaaaat gaagaaagag aatattcact ttcattttga
     1141 aagcaaacta gcacagcaaa agcggcaaaa agcgtgatgc atgtcgaata tcatcaaaat
     1201 aacttacaaa aaataactta atttgttttt cactttacaa gtgaaaccaa taatatctct
     1261 gcataaatat gaataaattc atttattttt caatgaatta atctattttt gttgcgattt
     1321 ttgacccatg attttctttt cgaattgtcg atattattga aggataactt tcaaagaaaa
     1381 atacaagggg ctatagtgtt acgcattaaa ggccaatgaa gagtgttaac gtgccgagaa
     1441 aatcgtctaa cctactgaaa cgcagattaa aaattgcaga aattgttgcc gcccaaggtg
     1501 aaatcaaagt tgatgactta tctgcgcaac ttggtgtctc tggcgtgacg atccgcggcg
     1561 atctcagtta tctggagcaa cagggatatt taaagcgatc atttggcggt gctattgcga
     1621 caccactctc ctctgaacca gaagcgatac aaccgatcgc gccattgtct ctggcacaac
     1681 aaatggaaat agcacgacat tgcgcacggt taattcgcga tcgtgacacg ctatttcttg
     1741 gacatgggac aatctgccgt aagatcattc cattgctcag cgaagtgaaa aaactgcgtc
     1801 tgatcaccaa cgatcccgaa catgcgctgc tggcaaatca gtttattgat ggcgaaataa
     1861 tactggctgg cagtgaaatg ctgcgccccg acaccgcact ggccggaaaa ccgcttgaac
     1921 aggcacttca gcatttcacc attacacata gcattctgga aatcaaccat ctggatgctg
     1981 atggtacttt aaatatcaac gttcccagac tggccgctgc ctggcagctc tgtttcgatc
     2041 atgcccagaa taagacggtt atcgttgccg ccgatcctgc gccatcaacg gctgctatcg
     2101 ggcatttgca tcaggcagaa aatgtgatcg tcagccgcag cattaacgaa caatatcagc
     2161 aacaattgca gtcggctgat ttcgttatcc tttataccag taatgagtgc tttacctggt
     2221 ccaatcgcga aaggcttcag gaatgagagg ggttttgtga caataactat ctgcgctatg
     2281 ggcgaattgc tggccgagtt tttgtcccgc aacccacatc aaaaattcac tcagcctggg
     2341 gagtttatcg ggccatttcc cagcggtgcg ccagcaattt ttgctgctca ggtggcaaaa
     2401 ctgtcccatc gggccatctt cttcggatgt gttggtaatg atgattttgg ccgactcatt
     2461 atagagcgcc tccgtcatga aggtgtcatt accgatggga tccatgttat gaacaatgcc
     2521 gtcacaggta cggcgttcgt gagttatcaa aatccccagc agcgcgattt cgtctttaat
     2581 atccctaaca gcgcctgcgg cttgtttact gctgagcaca ttgataagga tctgctaaaa
     2641 cagtgtaacc atctccatat tgtgggctca tcgttgttct catttcgcat gatcgatgtc
     2701 atgcgtaaag caataacgac gatcaaatcg gctggcggca ccgtttcttt cgatcccaat
     2761 attcgcaaag agatgctgag cattcctgaa atggcgcagg ctctcgatta tttgattgaa
     2821 tatacggata ttttcatccc cagcgaaagc gaactccctt tcttcgcgcg tcacaaaaat
     2881 ctgtcagaag aacagattgt tagcgatctt ctccacggcg gcgtaaaaca tgtggcgata
     2941 aaacgcgccc agcgtggggc cagctattac aagcttaaaa acggtacatt acacgcccag
     3001 catgttacag gccacgatat cgaaattatc gatccaacgg atgcaggcga ctgctttggc
     3061 gcaacgttta tcactctttt cttatccggt ttcccggcac ataaggcact gcaatatgca
     3121 aatgccagcg gcgcgctcgc cgtaatgcgg caaggtccga tggaagggat atcctcactg
     3181 gctgacattg aagacttttt gcagcagcac tgaacggcaa ttttctgtca gattattttc
     3241 cctgcctgaa gagttgccgt agaattgccc gtttctcgta tccccccatg aggaggaacc
     3301 cttccgtgga cactcgtttt gttcaggccc ataaagaggc gcgctgggcg ctggggctga
     3361 cccttttgta tctggcagtt tggttagcag ccgcttactt acctgacgtt gcccccggtt
     3421 ttaccggctt tccgcgctgg tttgagatgg cctgcatcct gacgccgctg ctgtttattg
     3481 gactgtgctg ggcgatggtg aaatttatct atcgcgatat cccactggag gatgacgatg
     3541 cagcttgaag tgattctacc gctggtcgcc tatctggtgg tggtgttcgg tatctctgtt
     3601 tatgcgatgc gtaaacggag caccggtacc ttccttaatg agtatttcct cggcagccgc
     3661 tctatgggcg gtattgtgct ggcgatgacg ctcaccgcga cctatatcag tgcaagttcg
     3721 tttatcggcg ggcctggagc tgcttataaa tacggcctgg gttgggtatt gctggcgatg
     3781 attcagcttc ctgcagtctg gctttcgctc ggtattctcg gcaagaagtt cgcgattctt
     3841 gcgcgccgct acaatgcagt gacgctgaac gacatgctgt ttgcccgcta ccagagtcgt
     3901 cttctggtgt ggctggcgag tttgagtttg ctggttgcgt tcgttggggc aatgaccgtg
     3961 cagtttatcg gcggtgcgcg cctgctggaa accgcggcgg gtattcctta tgaaaccggg
     4021 ctgctgattt tcggtatcag cattgcgttg tataccgcct ttggcggctt tcgcgccagc
     4081 gtgctgaacg acaccatgca agggcttgtg atgctgattg gcaccgttgt gctgcttatt
     4141 ggcgtggtac atgccgcagg tggtttaagt aatgcggtag agacgctgca aaccatcgat
     4201 ccgcaactgg ttacgccaca aggcgctgac gatattctgt cgcctgcctt tatgacgtcg
     4261 ttctgggtac tggtgtgctt tggcgtgatt ggcctgccgc atactgcggt gcgctgtatc
     4321 tcttataaag acagcaaagc ggtacaccgg gggatcatca tcggtacgat tgtagtcgca
     4381 atcctgatgt tcggtatgca cctggccgga gcgttaggtc gtgcagtgat ccccgatctc
     4441 accgtaccgg atctggtgat cccgacgtta atggtaaaag tgctgccacc gtttgctgcc
     4501 gggatctttc tggctgcacc tatggctgcg atcatgtcga caattaacgc ccaattgcta
     4561 caaagttccg ctacgatcat taaagatctc tatctgaata tccgtccgga tcaaatgcaa
     4621 aacgagacgc gtctgaagcg gatgtcggcg gtaattacgt tagttctcgg cgcgttgctg
     4681 ctgcttgccg cctggaagcc gccagaaatg atcatctggc tgaatttgct ggccttcggt
     4741 gggttggaag ccgttttcct gtggccgctg gtgctgggtc tttactggga acgcgccaac
     4801 gccaaaggcg cgctaagtgc gatgatcgtt ggcggcgtgc tgtatgccgt actcgcgacg
     4861 ctgaatattc agtacctggg cttccaccct atcgtgccct cgttactact aagtttgctg
     4921 gctttcctag tcggaaaccg tttcggtaca tccgtcccgc aagctaccgt tttgactact
     4981 gataaataaa gagttttgcc atgccttgga tccaactgaa actgaacacc accggcgcga
     5041 acgctgaaga tcttagcgat gcgctgatgg aagcgggtgc cgtttctatc acttttcagg
     5101 atacccacga tacgccagta tttgagccgc tgccgggcga aacgcgcctg tggggcgaca
     5161 ccgatgtgat tggtctgttc gacgctgaaa ccgatatgaa cgacgtggtg gcgattctgg
     5221 aaaaccatcc gctgctcggc gcaggcttcg cgcataaaat cgaacaactg gaagataaag
     5281 actgggagcg cgaatggatg gataatttcc acccgatgcg ctttggtgaa cgactgtgga
     5341 tctgcccaag ctggcgtgat gtgccggacg aaaacgccgt caacgtgatg ttagacccag
     5401 ggctggcgtt tggtacgggt acccatccaa ctacctctct gtgcctacaa tggctcgaca
     5461 gcctcgattt aactggtaaa acagtcatcg actttggctg cggttccggc attctggcta
     5521 tcgcggcgct gaaactgggt gcagcaaaag ccattggtat tgatatcgat ccgcaggcga
     5581 ttcaggctag ccgcgacaac gccgaacgta atggcgtttc tgaccgtctg gaactctact
     5641 taccgaaaga tcagccagaa gaaatgaaag ccgacgtggt ggtcgcgaac atccttgcag
     5701 gcccattacg tgaactggca ccgttaatca gcgtcctgcc ggtttcaggc ggtttgctgg
     5761 gcctttccgg tattctggca agccaggcag agagcgtttg tgaagcttat gccgatagct
     5821 tcgcactgga cccggtcgtg gaaaaagaag agtggtgccg tattaccggt cgtaagaatt
     5881 aaccttcgca tcgccgtagg gtgacgcggg gcgaagtgcg agcaagctca caaaaggcac
     5941 gtaaatttgc cggttattta cgcaaatttg cgtgccaaaa ttttcattca taaagaaaaa
     6001 ttgagaactt actcaaattt ctttgaatgt aaattttagt cactattttc taatatgatg
     6061 atttttatga gtaattatcg caccacgctc attttaaatg caattctttg atccatctca
     6121 gaggattggt caaagtttgg cctttcatct cgtgcaaaaa atgcgtaata tacgccgcct
     6181 tgcagtcaca gtatggtcat ttcttaactc atgcgcatcg gacaatatca gctcagaaat
     6241 cgcctgatcg cagcgcccat ggctggcatt acagacagac cttttcggac gttgtgctac
     6301 gagatgggag ccggattgac agtatccgag atgatgtctt ctaacccaca ggtttgggaa
     6361 agcgacaaat ctcgtttacg gatggtgcac attgatgaac ccggtattcg caccgtgcaa
     6421 attgctggta gcgatccgaa agaaatggca gatgcagcac gtattaacgt ggaaagcggt
     6481 gcccagatta ttgatatcaa tatgggttgc ccggctaaaa aagtgaatcg caagctcgca
     6541 ggttcagccc tcttgcagta cccggatgtc gttaaatcga tccttaccga ggtcgtcaat
     6601 gcagtggacg ttcctgttac cctgaagatt cgcactggct gggcaccgga acaccgtaac
     6661 tgcgaagaga ttgcccaact ggctgaagac tgtggcattc aggctctgac cattcatggc
     6721 cgtacacgcg cctgtttgtt caatggagaa gctgagtacg acagtattcg ggcagttaag
     6781 cagaaagttt ccattccggt tatcgcgaat ggcgacatta ctgacccgct taaagccaga
     6841 gctgtgctcg actatacagg ggcggatgcc ctgatgatag gccgcgcagc tcagggaaga
     6901 ccctggatct ttcgggaaat ccagcattat ctggacactg gggagttgct gcccccactg
     6961 cctttggcag aggttaagcg cttgctttgc gcgcacgttc gggaactgca tgacttttat
     7021 ggtccggcaa aagggtaccg aattgcacgt aaacacgttt cctggtatct ccaggaacac
     7081 gctccaaatg accagtttcg gcgcacattc aacgccattg aggatgctag cgaacagctg
     7141 gaggcgttgg aggcatactt cgaaaatttt gcgtaaacag aaataaagag ctgacagaac
     7201 tatgttcgaa caacgcgtaa attctgacgt actgaccgtt tctaccgtta actctcagga
     7261 tcaggtaacc caaaaacccc tgcgtgactc ggttaaacag gcactgaaga actattttgc
     7321 tcaactgaat ggtcaggatg tgaatgacct ctatgagctg gtactggctg aagtagaaca
     7381 gcccctgttg gacatggtga tgcaatacac ccgtggtaac cagacccgtg ctgcgctgat
     7441 gatgggcatc aaccgtggta cgctgcgtaa aaaattgaaa aaatacggca tgaactaatt
     7501 caggttagct aaatgcttga ttaaaaaggc gctactcggc atggggaagc gcctttttta
     7561 taggtgtcac aaagggagtg accatgagaa caggatgtga accgacccgg tttggtaatg
     7621 aagctaagac cattattcac ggtgatgcgc ttgccgaact taaaaagatc cccgccgaaa
     7681 gtgtcgatct gatctttgcc gacccaccat ataacatcgg taaaaatttt gatggtctga
     7741 tcgaagcctg gaaagaagat ctgtttatcg actggctgtt tgaagtgatt gcagagtgcc
     7801 accgcgttct gaaaaagcag ggcagcatgt acatcatgaa cagcacggaa aacatgccct
     7861 ttatcgatct ccagtgccgc aagcttttta ccatcaaaag tcgcatcgtc tggtcatatg
     7921 acagttctgg agtacaggcg aaaaaacact acggctccat gtacgacccc atcctgatga
     7981 tggtgaaaga cgcaaagaac tacacattca acggtgatgc tattctggta gaagccaaaa
     8041 ccggatcgca gcgcgcgttg atcgattatc gcaaaaatcc tccacagcca tacaatcatc
     8101 aaaaagtacc gggtaacgtc tgggattttc cgcgcgtgcg ttatttgatg gatgaatatg
     8161 agaaccaccc gacgcaaaaa ccggaagcct tactgaaacg cattattctc gcctcttcca
     8221 acccaggcga tatcgttctc gacccgtttg ccggtagctt tactaccggt gccgtagccg
     8281 tctccagcgg gcgaaaattc attggtattg agatcaacag cgagtacatc aaaatggggc
     8341 ttcgacggct ggatgtcgcg tcgcattact ctgcggaaga actggcgaaa gtgaaaaaaa
     8401 gaaagaccgg caacctgtca aaacgaagcc ggttaagcga agttgacccc gatctcattg
     8461 caaagtaaag gaagtgtaag cctggttttc agattattca tttcgtgtat atttcctgcc
     8521 agacttggtt aaacatgcac aggctcaggt aatgattcgc aagtattggt ggctcgtcgt
     8581 tttcgctgtc ttcgtttttc tgtttgatac tttactgatg cagtggattg aactgctgac
     8641 aacagaaaca gacaaatgcc gtaatatgaa ctcagttaat ccactaaaac tggttaactg
     8701 tgacgaactg aattttcagg acagaatgtg aatttacatg acacttaatt cattcgtttg
     8761 atgaattaat ttcgttatgt tttcatctgg catgaacatt cttaatacgt tatcgaccag
     8821 cgcgggtgct tgtttataaa gatcataacc cgccatattc attaaccagt tttgaacaat
     8881 tccgctgaag gcaccattaa taataatcat cacaacatct aaatcgaggt tatttgctac
     8941 acaaccttgt tgctgacacg cctgcaatac ttcgcggaga gtctgcggat taaagcccat
     9001 cttttcgcgt atcactccct cggccagcat ctcatcatta aattcacatt tgtgatataa
     9061 gattttcagc aacgcctgct ggcggggaat tttggcaata tattgcaagc cgacaatcaa
     9121 tttttcacgc aattgttgaa acgggtcatg ctctaatcca gccgtcaagt gttcctggat
     9181 taactcccgc aatgaaggct gttgcaacca catctcatta aacagttgag tcttgttttc
     9241 gaagtgccag tagatagcgc cacgcgtaac gttagcggcg tcggcaatgt cgttgagcgt
     9301 cgtcttgctt acgccatgct gcgcaaactg ggcgatggca gtttcaatca gttcttgccg
     9361 ggtcttcaga gcttcggctt tggttctttt tgccatgatt aattattcag gaaataaata
     9421 tattcgacac agggtgagaa aatagcgaag gttaatctat catctaatgt gtatttatac
     9481 gagagggtaa cattgagttg ctataaatcg tcaaataaac aatgtatatt atttacctaa
     9541 aatacattcg ccacatgaat atatatttca atttacgagg ttttaattct gcctctttca
     9601 acccgcgtca aaataaaaca gtagaatatt aatctttttt tgtgtttatg tgccttgaga
     9661 cgccagtatt cataactatt ccttacatcg acgaatgata atttgtagga tagcaaactg
     9721 tatttttctt tctgcgagtt aacgcgttgc ctttctgggt aaataacgcg cttttggttt
     9781 tttgaggaat agtaatgacg aaacatgcca ggtttttcct cctgccctcc tttattctga
     9841 tctccgcggc tttaatcgcc ggttgtaacg ataagggaga agagaaagct cacgtcggtg
     9901 aaccgcaggt taccgttcat attgtgaaaa cggccccgtt agaagttaag actgaattac
     9961 caggccgcac caatgcttac cgtatagccg aagttcgccc acaggttagc gggatcgtac
    10021 tgaatcgtaa tttcactgaa ggcagcgatg tacaagcagg ccagtccctg taccagatcg
    10081 atcccgcgac ctatcaggca aattatgaca gcgcgaaagg cgaactggcg aaaagtgaag
    10141 ccgccgccgc catcgcgcat ttgacggtaa aacgttacgt tccgctcgtg ggtacgaaat
    10201 acatcagcca gcaggagtac gaccaggcca ttgctgatgc tcgccaggcc gatgccgccg
    10261 tgattgccgc aaaagccaca gtcgaaagcg ctcgcatcaa tctcgcttat accaaagtga
    10321 ctgcgccaat tagcggacgt atcggcaaat cgaccgtgac cgaaggcgct cttgtcacta
    10381 atgggcaaac gactgaactg gcgactgtcc agcagctcga tcctatctac gttgatgtga
    10441 cccaatccag caacgatttt atgaggctga agcaatccgt agagcaagga aatttgcata
    10501 aggaaaacgc caccagcaac gtagagttgg tcatggaaaa cggtcaaacc tatcccctga
    10561 aaggtacgct gcaattctct gatgtgaccg ttgatgaaag caccggctcc ataaccctac
    10621 gtgctgtctt ccctaacccg caacatacgc ttttgccggg tatgtatgtg cgtgcacgga
    10681 ttgatgaagg cgtccaacct gacgccattc ttatcccgca acaaggcgtt agccgcacac
    10741 cgcgtggtga tgcaaccgtg ctgattgtta acgataaaag tcaggtggaa gcgcgccctg
    10801 tcgttgccag tcaggcgatt ggcgataaat ggttgattag cgaaggtctg aaatctggcg
    10861 atcaagtcat tgtcagcggc ctgcaaaaag cgcgtccggg agagcaggtt aaagccacta
    10921 ccgatacccc cgcagatact gcatcgaagt aaggtaatct gacatggcaa acttttttat
    10981 tcgacgaccg atatttgcat gggtgctggc cattattctg atgatggcgg gcgcactggc
    11041 gatcctacaa ttgcccgtcg ctcagtatcc aaccattgca ccgcctgcgg tttctgtttc
    11101 ggcaaactat ccaggtgctg atgcgcagac cgtgcaggat acggtgacgc aggttatcga
    11161 acagaatatg aatggtatcg ataacctgat gtatatgtcc tccaccagcg attccgccgg
    11221 tagcgtgaca attactctta ccttccaatc cgggaccgat cctgatatcg cgcaagtgca
    11281 ggtgcagaac aaactccagc tcgccacgcc gttgctgccg caggaggttc agcagcaggg
    11341 gatcagtgtt gaaaagtcca gtagcagcta tttgatggtg gcgggttttg tctctgataa
    11401 cccaggcacc acacaggacg atatctcgga ctatgtggcc tctaacgtta aagatacgct
    11461 tagccgtctg aatggcgtcg gtgacgtaca gcttttcggc gcacagtatg cgatgcgtat
    11521 ctggctggac gccgatctgc taaacaaata taaactgaca ccggttgatg tgattaacca
    11581 gttgaaggta cagaacgatc agatcgctgc cggacagttg ggcggaacgc cagcgttacc
    11641 agggcaacag ttgaatgcct cgattattgc tcaaacgcgg ttaaaaaatc cggaagaatt
    11701 cggcaaagtg accctgcgcg taaacagtga cggctcggtg gtacgcctga aagatgtcgc
    11761 acgggttgaa cttggcggtg aaaactataa cgttatcgct cgtatcaacg gaaaaccggc
    11821 ggcgggcctg gggattaagc tggcaaccgg cgcgaatgct ctcgataccg cgaaagccat
    11881 taaggcaaaa ctggcggaat tacagccatt cttcccgcag ggaatgaagg ttctctaccc
    11941 ttatgacacc acgccattcg tccagctttc tattcacgaa gtggtaaaaa cgctgttcga
    12001 agccattatg ctggtgttcc tggtgatgta tctgttcttg cagaatatgc gagcaacgct
    12061 gatccccacc attgcggtac ccgtggtgtt gttagggacg tttgccatcc tcgccgcttt
    12121 tggttactcc atcaacacac taacgatgtt cgggatggtg cttgccatcg ggctgctcgt
    12181 cgatgatgcg atagtggtgg tggagaacgt cgagcgcgtg atgatggagg ataagctccc
    12241 gccaaaagaa gcgacggaaa aatcgatgtc gcaaattcag ggcgcactgg tgggtatcgc
    12301 gatggtgctg tcagcggtat ttattccgat ggcattcttc ggcggttcta ctggggcaat
    12361 ttatcgccag ttctctatca ccatcgtttc ggcaatggca ctttctgttc tggtggcatt
    12421 gattcttacc cctgcgttat gtgcaacgct gcttaaaccc gtctctgctg agcatcacga
    12481 aaataagggc ggtttcttcg gctggtttaa taccaccttc gatcatagcg ttaaccacta
    12541 caccaacagc gtcggcaaaa tcctcggttc cacaggacga tatttactga tctatgcgct
    12601 gattgttgca ggaatggtgg tgttgttttt acgtcttccg tcttccttct tacctgaaga
    12661 ggatcagggt gtctttctga ccatgattca gttacccgct ggcgcgacgc aagagcggac
    12721 gcaaaaagtg ttggatcaag tgacggatta ctatctgaag aacgagaaag cgaacgttga
    12781 aagtgtcttt acggttaacg gctttagctt cagcggctag gcacaaaacg ccggtatggc
    12841 cttcgtcagt ctgaaaccgt gggaagagcg taatggtgat gaaaacagtg cggaagcggt
    12901 aatccatcgt gccaaaatgg aattgggcaa gatccgcgac ggttttgtca ttccattcaa
    12961 tatgccagcc attgttgaac tgggcacggc aacgggtttc gactttgagt taattgatca
    13021 ggctgggctg ggtcacgatg ccctaaccca ggcccgtaac cagttgcttg gtatggcggc
    13081 gcaacatcct gccagcttag tcagcgtgcg tcctaatggc ctggaagaca ccgcgcagtt
    13141 taaactggaa gttgaccagg aaaaggcgca ggcattaagt gtttcacttt ctgacatcaa
    13201 tcagaccatt tcaacggcgt tgggtgggac ttacgttaac gacttcatcg accgtggtcg
    13261 cgtgaaaaag gtgtatgttc aggcggatgc caaattccgt atgctgccag aagatgtcga
    13321 taaactttat gtccgcagcg ccaacggcga aatggtgcca ttctcggcct ttaccacttc
    13381 acattgggtg tatggctctc cgcgactgga acactacaac ggtctgccgt caatggagat
    13441 tcagggggaa gccgcgccag gaaccagttc cggcgatgcc atggcgttga tggaaaacct
    13501 tgcgtcaaaa ttacctgcgg gcattggtta tgactggacg ggtatgtcgt atcaggaacg
    13561 cttatcggga aaccaggctc ccgctctggt agcaatttcc tttgtggttg ttttcctgtg
    13621 ccttgctgca ctctatgaaa gctggtcaat tcctgtctcg gttatgttgg tcgtgccgtt
    13681 agggattgtc ggcgtgctgc tggcggcgac actctttaat caaaaaaatg acgtctactt
    13741 tatggtgggc ttgctaacga caattggctt gtcggccaaa aacgctattt tgattgttga
    13801 gttcgctaaa gatctcatgg agaaagaggg taaaggtgtt gttgaagcga cactaatggc
    13861 agtacgtatg cgtctgcgtc ctatcctgat gacctctctc gcctttattc tcggcgtatt
    13921 accgctagct atcagtaacg gtgcaggcag tggcgcgcag aacgcagtgg gtatcggggt
    13981 aatgggcgga atggtctctg caacgttgct ggcaatcttc ttcgtaccgg tgttctttgt
    14041 ggtgatccgc cgttgcttta aaggataaat cagaaacata aaggcacttt cggatgcctt
    14101 tattattttc agtgaaaccc ataaaaatta ataagatatt cttccactca ctctttaaaa
    14161 actttctata gttcccgctc ccttcactat ttttacaatt cacataattt gtcattattc
    14221 attccgcaat atttataacc tccggtgata aaatggcatt cagctcgtta ataagagagt
    14281 taacttatta agcgttagcg tttattactg aggtaacacc atgaaaagat taattcctgt
    14341 ggcattgctc accgcattgc tggcgggctg tgctcacgat tcgccctgcg ttccggttta
    14401 tgacgatcag ggtcgtctgg ttcacaccaa tacctgtatg aaaggcacga ctcaggataa
    14461 ctgggaaacg gctggggcta ttgccggcgg ggcagcggct gttgctggcc tgacgatggg
    14521 gatcatcgct ctgtcgaaat aactgaacag ggcgcggagt ttcgcgctct gtttaacgat
    14581 acagtatctt tacataagat aaaatattgc tatattctgc tggctaattc tctgctgatt
    14641 tagcatgtta tatcgcgtta tttcgctgct ttcgaaataa cgcatcaatt taactttcac
    14701 acttcccacc agaaatatac tcacgctaac aatcattatt ctgcttagta aaacacgcgt
    14761 aaatattttg cgccaaaatg tggcgcatgt ttcattttcg caccattgcg gggcgctgtt
    14821 tttattattt actgtctaca ctcagcttat tgcgacgcga aatcgtgcgc aaaagctggc
    14881 actacttttg cttataagag gatggccaca gacaggtaaa agacgtttcc caaacgtcct
    14941 ataacgataa ttttcgcctc acaggaagca ttatgaaaaa gatgatgata gccacactgg
    15001 ctgccgccag cgtgctgctt gccgttgcaa atcaggcgca tgctggcgcg acgcttgatg
    15061 ccgttcagaa aaaaggtttt gtgcaatgcg ggatcagtga tggattacct gggttctctt
    15121 atgccgatgc agacggtaag ttttcaggta ttgatgttga tgtttgtcgt agtgttgccg
    15181 ctgctgtatt tggtgacgac acgaaagtga aatatacccc actcacagca aaagaacgct
    15241 tcacggcttt acagtcaggg gaagtggatt tgctctcccg taatacgacc tggacttcat
    15301 ctcgcgacgc cgggatggga atggcattta ctggcgtcac ttattacgac ggcattggct
    15361 tcctgacgca cgataaagcg gggctaaaaa gcgcgaaaga actggatggc gctaccgtct
    15421 gtattcaggc gggtactgat accgaactca acgttgccga ctatttcaag gcaaacaata
    15481 tgaagtacac accggtgact ttcgatcgct ctgacgaatc agcgaaggca ctggaatctg
    15541 gtcgctgcga tacgctggcc tcggatcagt cgcaactgta tgccctgcgc atcaaattaa
    15601 gcaacccagc tgaatggatt gtcttaccgg aggttatctc taaagaaccg cttgggccgg
    15661 tagttcgtcg tggcgatgat gaatggttct cgattgtacg ctggacgct
//
LOCUS       DAJVUN010000087        15330 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.087, whole genome shotgun sequence.
ACCESSION   DAJVUN010000087 DAJVUN010000000
VERSION     DAJVUN010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15330
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.087"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            44..718
                     /locus_tag="OQQ76_002355"
     CDS             44..718
                     /locus_tag="OQQ76_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002431142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HCS1968830.1"
                     /translation="MQAGLKEVMRTHFPEYEIISSASAEDLTLLQLRRSGLVIADLAG
                     ESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLV
                     KTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERKVLRLLGKGWGINQIVSL
                     LKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELNLPSVYGDAAEWNTAELR
                     REMSHS"
     gene            676..1352
                     /gene="bglJ"
                     /locus_tag="OQQ76_002356"
                     /pseudo
     CDS             676..1352
                     /gene="bglJ"
                     /locus_tag="OQQ76_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418786.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator BglJ"
     gene            complement(1390..2178)
                     /gene="fhuF"
                     /locus_tag="OQQ76_002357"
     CDS             complement(1390..2178)
                     /gene="fhuF"
                     /locus_tag="OQQ76_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HCS1968831.1"
                     /translation="MAYRSAPLYEDIIWRTHLQPQDAGLAQAVRATIAKHREHLLEFI
                     RLDEPAPLNAMTLAQWSSPNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGL
                     MVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQQRMETL
                     ISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEVTVESLRHALFFEK
                     TLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK"
     gene            2319..2555
                     /locus_tag="OQQ76_002358"
     CDS             2319..2555
                     /locus_tag="OQQ76_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313355.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1435 domain-containing protein"
                     /protein_id="HCS1968832.1"
                     /translation="MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTP
                     VMLYHKQLRHYVLLPSCLALIAAIMLMIMNLNQG"
     gene            complement(2594..2680)
                     /locus_tag="OQQ76_002359"
     tRNA            complement(2594..2680)
                     /locus_tag="OQQ76_002359"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2644..2646),aa:Leu,seq:cag)
     gene            complement(2715..2801)
                     /locus_tag="OQQ76_002360"
     tRNA            complement(2715..2801)
                     /locus_tag="OQQ76_002360"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2765..2767),aa:Leu,seq:cag)
     gene            complement(2830..2916)
                     /locus_tag="OQQ76_002361"
     tRNA            complement(2830..2916)
                     /locus_tag="OQQ76_002361"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2880..2882),aa:Leu,seq:cag)
     gene            complement(3184..4215)
                     /gene="rsmC"
                     /locus_tag="OQQ76_002362"
     CDS             complement(3184..4215)
                     /gene="rsmC"
                     /locus_tag="OQQ76_002362"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HCS1968833.1"
                     /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRA
                     HTQQFHHGQVLSRQMGDNARFSLVATVDDVADCDTLIYYWPKNKPEAQFQLMNLLSLL
                     PVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWG
                     EYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS
                     PKIRLTLCDVSAPAVEASRATLAANCVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ
                     TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA
                     IMTRQAKKG"
     gene            4318..4731
                     /gene="holD"
                     /locus_tag="OQQ76_002363"
     CDS             4318..4731
                     /gene="holD"
                     /locus_tag="OQQ76_002363"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HCS1968834.1"
                     /translation="MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVAN
                     DLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQ
                     VASPALTELRANPTARAALWQQICTYEHDFFPRND"
     gene            4700..5146
                     /gene="rimI"
                     /locus_tag="OQQ76_002364"
     CDS             4700..5146
                     /gene="rimI"
                     /locus_tag="OQQ76_002364"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HCS1968835.1"
                     /translation="MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQ
                     LTQNGKMAAFAITQVVLDEATLFNIVVDPDYQRQGLGRVLLKHLIDELEKRGVATLWL
                     EVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM"
     gene            5161..5838
                     /gene="yjjG"
                     /locus_tag="OQQ76_002365"
     CDS             5161..5838
                     /gene="yjjG"
                     /locus_tag="OQQ76_002365"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HCS1968836.1"
                     /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA
                     VNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVS
                     LLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGIAKPNKKIFDYAL
                     ELAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHREQPEGIAPTWTVSSLHEL
                     EQLLCKH"
     gene            6224..7447
                     /locus_tag="OQQ76_002366"
     CDS             6224..7447
                     /locus_tag="OQQ76_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001402824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1968837.1"
                     /translation="MALSDAWLRSVVGKERDKVLVKSDRDGLSVRVSPKGRVVFQYRY
                     QWAGKGERLDIGTYPATGLKEAREEVIRLRGELESNRNPRFVKQAEKRKATEAMTVES
                     VIRAWYEAYCVKNKKGSEQILRSFELHLFSKIGNIPHDAATLHDWLEVLEPLSTKTPA
                     IADRLLINAKQAHVWAYKRKLIETRPLSDITGKDMDIRKGQKKRFLTHDEIKILYAAI
                     DGSRMVPKYRAFIKLLLHFGCRSSELITARVDDFDFINKVWTVPPERHKTGEITGEPL
                     KRPIIEPVEELIKNAISMNNGSDMLFTKEGSREPVGRTSLQSLPYNLMQYAWRRLGYQ
                     FPHWSLHDLRRTARTNFSDLTAPHIAEIMLGHKLPGVWQVYDKSDYLEEQRKAYQAWW
                     ERVESIITCASSDPN"
     gene            7602..8417
                     /locus_tag="OQQ76_002367"
     CDS             7602..8417
                     /locus_tag="OQQ76_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016570101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968838.1"
                     /translation="MQSEIITQKNGKGIFDRKAWLTESKKLYLSAKLLRSEGERNKKL
                     LRAASKKSPIVHEYIDIASATDQTSRLMLGYAFEMLLKSAILLMNLGARKKAIENEFC
                     NYGHKLDCMAVDLGLPLTVDELKLLKVASRDIVLNARYPIGIVDDNKYITELNERNIQ
                     LADENIFRDMVSLYDKIKSIVAKFDNDVANCANFNMLRLSEFTLFMRNGGGLSSRAIV
                     IFSDKFPEVSKRKSYLKKAIEEHAGKVAFLYTYRWSSFSFFEDTGKKLIPLVE"
     gene            complement(8747..9358)
                     /locus_tag="OQQ76_002368"
     CDS             complement(8747..9358)
                     /locus_tag="OQQ76_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000206726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HCS1968839.1"
                     /translation="MTTFTDKELIKEIKERIGSLDVRDNVERRAYEIALASLEAEPVA
                     WLHSDNGLGIPAITRSKNIADSWLSKGWYVQPLYMAQPVSVVPDALPSLNNGIVGFDE
                     GWNACRAVMLHGAEPVSQTYKLNKLSGNPPVTPDGWISCSERMPEDGQHVIILCDGAF
                     VLYAQYRDGEFFDVVRNGEEFFETQSRNVTHWIPLPEPPQEVN"
     gene            complement(9358..9720)
                     /locus_tag="OQQ76_002369"
     CDS             complement(9358..9720)
                     /locus_tag="OQQ76_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968840.1"
                     /translation="MRMNVFEMEGFLRGRCVPRDLKVNETDAEYLVRKFDALEAKCAA
                     QENKVIPVSTELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLE
                     NVNITHWAVMPKAPEAGA"
     gene            complement(9711..10247)
                     /gene="yfdR"
                     /locus_tag="OQQ76_002370"
     CDS             complement(9711..10247)
                     /gene="yfdR"
                     /locus_tag="OQQ76_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416862.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
                     /protein_id="HCS1968841.1"
                     /translation="MSFIKTFSGKHFYYDRINKDDIDINDIAVSLSNICRFAGHLSHF
                     YSVAQHAVLCSQLVPQEFAFEALMYDATEAYCQDIPAPLKRLLPDYKQMEEKIDAVIR
                     EKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHA
                     YGMFMERFNELSELRKCA"
     gene            complement(10375..11199)
                     /locus_tag="OQQ76_002371"
     CDS             complement(10375..11199)
                     /locus_tag="OQQ76_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2303 family protein"
                     /protein_id="HCS1968842.1"
                     /translation="MSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHD
                     LEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEP
                     GHADNTATLKLKKTAPFSALLSINGERNSQKSLAEWIEDWADYLVGFDANGDAIQATK
                     AAAAVRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKER
                     PFKLRLSIITGDRPVLVLRIIQLEAVQEEMANEFRDLLVEKFKDSKVETFIGTFTA"
     gene            complement(11265..11645)
                     /locus_tag="OQQ76_002372"
     CDS             complement(11265..11645)
                     /locus_tag="OQQ76_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001323604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968843.1"
                     /translation="MIRSRKMASERSTDVQAFIGELDGGVFETKIGAVLSEVASGVMN
                     TKTKGKVSLNLEIEPFDENRVKIKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTI
                     LQEDQGQLLTLAGEPDGKLRAAGH"
     gene            complement(12296..12970)
                     /locus_tag="OQQ76_002373"
     CDS             complement(12296..12970)
                     /locus_tag="OQQ76_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HCS1968844.1"
                     /translation="MKTVHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGA
                     TKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGA
                     WKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
                     DDVIALMHDSGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPR
                     RYTIKA"
     gene            13061..13261
                     /locus_tag="OQQ76_002374"
     CDS             13061..13261
                     /locus_tag="OQQ76_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1968845.1"
                     /translation="MKAYWDSLTKEQQGELAGKVGSTPGYLRLVFNGYKKASFVLAKK
                     LEQCTSGAITKSDLRPDIYPKD"
     gene            13305..13856
                     /locus_tag="OQQ76_002375"
     CDS             13305..13856
                     /locus_tag="OQQ76_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968846.1"
                     /translation="MGKHHWKVEKQPEWYVKAVRKTIAALPGGYAEAAEWLDVTENAL
                     FNRLRADGDQIFPLGWAMILQRAAGTHYIADAVAQSAGGVFVSLPEIEEVENADINQR
                     LLEVIEQIGSYSKQIRSAIEDGVVEPHEQTAINDELYLSISKLQEHAALVYKIFCAPE
                     KSDARECAAPGVVAFCVCGETNA"
     gene            13853..14689
                     /locus_tag="OQQ76_002376"
     CDS             13853..14689
                     /locus_tag="OQQ76_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001376881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HCS1968847.1"
                     /translation="MNSLTANNRLSQQLVVSVAEHLLLRHECRLPNHLAVSNHRELYL
                     TVGGELCRNLTAGFVTEEGFMSMLFVGSQKHSALSIFAKTTRMSALVLCGNSGVILLS
                     VKDHQHIDSAIPGRYTVQAPYKAGAGIGVLEMLSAIYDAPASFLSSASVHTQIMVGWT
                     GAPKGAPVSDNAGYANPVQFTTSEIGVSGGEGNSLLSEAAIMATVPALTRLNDEDLHK
                     LSYVTTALRALRKVTLSDPQAHQVLVETLLNLQAERIRLADKANFHIHRLLNISGGHR
                     HA"
     gene            14682..14918
                     /locus_tag="OQQ76_002377"
     CDS             14682..14918
                     /locus_tag="OQQ76_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000933940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968848.1"
                     /translation="MLNPLILNICRLLQRKKTSIPTVGQWYTTPAGHVLRVSLVDREC
                     QKVICEPLGRNYRVSMPLIAFRSGKNMKHLGGAA"
     gene            14915..>15330
                     /locus_tag="OQQ76_002378"
     CDS             14915..>15330
                     /locus_tag="OQQ76_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1968849.1"
                     /translation="MSMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIA
                     DQCEISKRSVMNHIAALCESGLVKKVTRKGEKGNSSNIYLLHLDGAGDSLGGSANNSL
                     SGAANSPGSAGVAPGGSAGDSPRTSHSFEPVKEPVN"
BASE COUNT         3971 a         3529 c         3762 g         4068 t
ORIGIN      
        1 aggatgctgc aaaaatggaa ttgttatcag taaaatacct gttatgcaag cagggttaaa
       61 agaggtcatg aggactcact tccctgaata tgaaataata tccagcgcct ctgcggagga
      121 ccttacctta ttacaattac gtcgttccgg attagtcatt gctgatttag ccggtgaaag
      181 tgaagatcca cgttctgttt gtgaacatta ttattcttta atctcacaat atcgggaaat
      241 tcactgggtt ttcatggtgt cacgctcctg gtattcccag gcagtagaat tgctcatgtg
      301 ccctacggcg acgttattgt ctgatgttga acccattgag aatctggtca agaccgtacg
      361 ttccggcaat acgcacgcag agcgtatcag cgccatgctg acctctccgg caatgaatga
      421 aactcatgat tttagctatc gctccgtcat tctcactctt tcagagcgca aggtactgcg
      481 gctattaggt aaaggatggg gcatcaacca gatagtttcg ttgcttaaga aaagtaataa
      541 aactatcagc gcccaaaaaa acagtgcgat gcgtcgactg gcaattcaca gcaacgctga
      601 aatgtatgca tggataaata gcgcgcaggg tgcaagagaa cttaacttgc cttctgttta
      661 tggagatgcc gcagaatgga acacagccga attaagaaga gaaatgtcgc actcatagaa
      721 aaatgcgtca tgagcagtat cggtattgag agtttattca gaaagtttgc gggtaaccct
      781 tataagctcc atacctatac cagtcaggag tcatttcagg atgccatgtc gcggatctca
      841 tttgcggcgg tcatttttct ttttctgcca tgagaagtga gcgcagagag ggattatctt
      901 gcctgactga actggcgatt aagtttccgc gtacccggcg tttagttatt gcggatgatg
      961 atattgaagc tcggctgatt ggttcattgt cgccatcacc gctggacggt gtattaagta
     1021 aagcgtcaac gctggagatt tttcatcagg aactcttttt gtcattaaat ggtgtacgtc
     1081 aggcgaccga ccgactgaac aatcagtggt acattaacca aagccggacg ctaagcccga
     1141 cggagagaga aatattgcgc tttatgtcgc gtggctactc aatgacacaa attgccgagc
     1201 agcttaaacg caatatcaaa acgatccgtg cacataaatt taatgtgatg tcgaaactgg
     1261 gcgtcagttc tgatgcaggg ttgttggagg ccgcagatat tctgttatgt atgcggcatt
     1321 gcgaagcaag taatgtgttg catccctatt aatcctcatg atgccgggtt tacttccccg
     1381 gcagtgcttt catttcagcg tacaatcgcc acattgctgc acatccggta agcgataacg
     1441 ctggcagcag gttcggcgca ccagcaggcc atcgcgcagc acgacggtac gccagagtgg
     1501 attatcttca ccgttcgtga gcgttttctc aaaaaagagg gcatggcgca gcgattcaac
     1561 cgtcacctcg ccgagcagtt gcttcatctc agtgagatac cagttgatca aataaccggt
     1621 attactccag ataagtttgc cgttgatctc tccggtcgct tctagtgcct gcacaaccgg
     1681 aaccagcgcc tggctgatta acgtttccat tcgctgctgc ggcgaatgtg gtgttgcgtt
     1741 tttatcttca cacacatcga cccagaaaca ggcgacgcgt ccggtttcgt gaaactcagc
     1801 atggaaatgt tccggcgaca catctaatgc cttttcctgc gtcagtagcg ccagcattaa
     1861 tggtggcacc atcaggccga tataccattg tgcccatagt gagatcagcg gtttgttctc
     1921 gcggatcatc gttggttggt tgcgatagat atgatcggaa tagaccgcga gtagagaact
     1981 tagcgcattc ggtgatgacc attgcgccag cgtcatggcg ttaagcggag cgggttcatc
     2041 caggcggata aactcgagca aatgttcacg atgtttggcg atcgtcgcac gtacggcttg
     2101 tgcaagccca gcatcctgcg gctggagatg cgttcgccag atgatatctt catagagcgg
     2161 tgcggaacga taggccataa tcgggatagt aatctaaatg ataatgattg ctaatcctag
     2221 cgataggttt acccgatagc aagggatttc tctggcttga aaatgataaa aattatcata
     2281 tgatattagt tatcattatc aatgaaagag atgaaaccat gttgcaacgt acgctgggca
     2341 gtggctgggg agtgttgctg ccgggattgc tgattgcagg gctgatgtat gcggatttat
     2401 cgccggatca gtggcggatt gtcattctga tgggattagt attgacgccg gtgatgctgt
     2461 atcacaaaca gttacggcat tacgttttgc taccatcgtg cctggcgctt attgctgcca
     2521 tcatgctgat gataatgaat ttgaatcagg gatgaaaaat caaggaagaa acaagaaagg
     2581 aagtaaagat aattggtgcg agggggggga cttgaacccc cacgtccgta aggacactaa
     2641 cacctgaagc tagcgcgtct accaattccg ccaccttcgc acaatcatct tacttttttt
     2701 gatatcgcct cgtttggtgc gagggggggg acttgaaccc ccacgtccgt aagaacacta
     2761 acacctgaag ctagcgcgtc taccaattcc gccaccttcg cccagtgcga gcaatatcaa
     2821 cgtggttttt ggtgcgaggg gggggacttg aacccccacg tccgtaagga cactaacacc
     2881 tgaagctagc gcgtctacca attccgccac cttcgcatac catcaattct taaaaagaat
     2941 tgctaccacg gaggcgcatt ctagtggttt tcagcttttc gtcaatagtt aattatcgcc
     3001 ggaggtgtaa ttgctggaaa aatgtccatc aggaaactag cgtgcaggtt tggtaggcat
     3061 gcgggggcag atgccagatg cgacgctggc gcgtcttatc tggcctacga agggctaacg
     3121 tgcaggtttt gtaggtcgga taaggcgttt acgccgcatc cggcaaggct tgcggcggga
     3181 tacttaacct tttttcgcct ggcgggtcat aatggcgcga tataccttga aacgcccggt
     3241 ttgcgcaatc acttcatgga agccaaatgt ctcatccagc acgtccggat aaggcaggaa
     3301 ggcgttcgct acaattcgca gctcgccgcc actattaaga tgacgcaccg cgccgcgaat
     3361 cagcgtttgc gccgcatcca ggctggtttg catcccatcg tggaacggcg ggttggagat
     3421 gatcatatca aaacgacctt tcacctcgga aaagacgttg ctggcaaaga cttcaccttc
     3481 aacacagttg gccgcaagtg ttgcgcggct ggcttctacc gctggcgcag agacatcgca
     3541 caaggtgaga cgaattttcg gcgaatggcg cgcaaaggca actgaaagca cccccgcgcc
     3601 acagccgaca tccagcactt tacctttcgt gtgcggagtt aacgtcgaga gcagcaactg
     3661 gctaccgaca tccagaccgt cgcggctaaa cacgccaggc agcgttttga ccgtcaggcc
     3721 atcgacgctg tattcgcccc agaatttatc ggcatcaaat accggctgtt tttccagacg
     3781 accaaaatag aggccacagc gacgagcgct gtcgacttta ttcaacggcg cataatctgc
     3841 cagcatctgc tcggcgctgc gcacgccgct gcggttctcg ccaacgacaa aaatatctgt
     3901 ccccactggc agcagagaaa gtaaattcat caactggaac tgggcttccg gtttgttctt
     3961 cggccagtag taaatcagcg tatcgcaatc tgcgacgtca tccaccgtgg cgaccagact
     4021 gaaacgggcg ttatccccca tctggcggct taatacctgc ccgtggtgga attgctgggt
     4081 atgagcacgg ctggccgcgg tatctaaacg cgcgggcagg tcatcctgta agtctccggc
     4141 aaacagaata cggctttgtt cgaaatcatc actgtgacgc agcaagactt cacttgccgg
     4201 ggtaaatgca gacatggaat gctcctcaat tgatactggc ggcgattata gccatatgtt
     4261 ggcgcggtat cgacgaattt gctatatttg cgcccctgac aacaggagcg attcgctatg
     4321 acatcccgac gagactggca gttacagcaa ctgggcatta cccagtggtc gctgcgtcgc
     4381 cctggcgcgt tgcaggggga gattgccatt gcgatcccgg cacacgtccg tctggtgatg
     4441 gtggcaaacg atcttcccgc cctgaccgat cctttagtga gcgatgttct gcgcgcatta
     4501 accgtcagcc ccgatcaagt gctgcaactg acgccagaaa aaatcgcgat gctgccgcaa
     4561 ggcagtcgct gcaacagctg gcggttgggt actgacgaac cgctatcact ggaaggcgct
     4621 caggtggcat caccggcgct caccgaatta cgggcaaacc caacggcacg cgccgcgtta
     4681 tggcaacaga tttgcacata tgaacacgat ttcttccctc gaaacgactg atttaccagc
     4741 agcttaccac attgaacaac gcgcccacgc ctttccgtgg agtgaaaaaa cctttgccag
     4801 caaccagggc gagcgttatc tcaactttca gttaacgcaa aacggcaaaa tggcggcgtt
     4861 tgcgattacg caagtggtgc tggatgaagc tacattgttc aatattgtgg tcgatcctga
     4921 ctatcagcgt cagggattgg gaagggtgct gctgaaacat ctgatcgacg aactggaaaa
     4981 acgcggcgtg gcgacactat ggctggaagt ccgtgcttca aacgctgccg ccattgccct
     5041 gtacgaaagt ttaggcttta acgaggcgac gattcgccgc aattactacc ccaccacgga
     5101 cggtcgcgaa gacgccatca tcatggcgtt gccaatcagt atgtaagaca aggtggaata
     5161 atgaagtggg attggatttt ctttgatgcc gatgaaacgc tgtttacctt tgactcattc
     5221 accggcctgc agcggatgtt tcttgattac agcgtcacct ttaccgctga agattttcag
     5281 gactatcagg ccgttaacaa gccactgtgg gtggattatc aaaacggcgc gatcacttca
     5341 ttacagcttc agcacgggcg tttcgagagc tgggccgaac ggctgaaagt tgaagcaggc
     5401 ttgcttaacg atgcctttat taatgcgatg gcggaaatct gcacgccgct gccgggcgcg
     5461 gtttctctgc ttaacgccat tcgtggcaac gctaaaatcg gcatcatcac caacggtttt
     5521 agcgccttgc agcaagtgcg tctggaacgg acgggcctgc gtgattactt tgatttgctg
     5581 gtgatttccg aagaagttgg cattgccaaa ccgaataaga aaattttcga ttatgcgctg
     5641 gaactggcgg gcaatcctga ccgttcacgc gtgctgatgg ttggcgacac tgccgagtcc
     5701 gatattctcg gtggcatcaa cgccgggctt gcgacttgct ggctgaatgc gcaccatcgc
     5761 gagcaaccag aaggcatcgc gcccacctgg accgtttcat cgttgcacga actggagcag
     5821 ctcctgtgta aacactgatt gcctcccccc cgttgatggg taaaatagcc gcaatttttc
     5881 gttttcaaca agcgcggcgc gatgccgctt actcaagaag aaagaattat gacgttgtct
     5941 ccttatttgc aagaggtggc gaagcgccgc acttttgcca ttatttctca ccccaataat
     6001 taagcccaat ttaaagctct tttattcttt caaaatcctt tcagttaatt gaggttgagt
     6061 catataactc atttaaatac atttggttat atggcttctt taattgaaaa ttctttcatg
     6121 tagctttaaa tcgatcaggt tgctttcatc aaaaatctgt acatatgctt gtacataatg
     6181 tacaaagcag cagaggtgtt ttgcgatttg tacaaggtga gtaatggcgc tgtctgatgc
     6241 gtggttgcgt tcagtcgttg gaaaggaacg tgataaggtt ttggttaaat ccgatcgtga
     6301 tggtctgtct gtcagagtat caccgaaagg tcgcgtagtg ttccaatatc gttatcaatg
     6361 ggcagggaaa ggtgagcgtc ttgatatcgg aacttacccg gcaactggat taaaagaggc
     6421 cagagaagaa gttattcgtc tccgtggtga acttgagtca aaccgtaatc cacgatttgt
     6481 caagcaggct gaaaaacgaa aagctactga agccatgacg gtagagtctg tgatccgtgc
     6541 ctggtatgaa gcatattgtg taaaaaataa aaaaggttct gaacagatac tccgctcgtt
     6601 tgagctgcac ctgttctcta aaatcgggaa tatccctcac gatgcagcta cattgcatga
     6661 ttggttagaa gtcctggagc ctcttagcac taagactcca gcaatagcag accgattgct
     6721 aattaacgca aagcaggccc atgtctgggc gtataagaga aagctcattg aaactcgccc
     6781 gctgtcggat atcacgggta aagatatgga tatccgtaaa ggtcagaaga aacggtttct
     6841 gacacatgat gaaattaaaa tcctttatgc tgcgatcgat ggttctcgaa tggttcctaa
     6901 ataccgggcc ttcattaagc tattgctgca ttttggctgc cgtagttcag agctaattac
     6961 tgccagggtg gacgattttg atttcattaa taaggtatgg actgtaccac cagaacgaca
     7021 taagactggg gagataacag gcgaaccgct aaagaggccc attattgaac cggtggagga
     7081 gcttataaag aacgctatct ctatgaacaa tggttccgat atgcttttta ctaaggaagg
     7141 aagcagggaa cccgttggtc gaacatcatt gcagtcgctg ccttacaatt taatgcagta
     7201 cgcatggcgg cgtttggggt atcaattccc tcattggtct cttcatgatt tgaggcgaac
     7261 agcacgaaca aacttttctg atcttactgc tcctcatatt gcagaaataa tgctcggcca
     7321 taaactgcca ggggtttggc aggtttatga caagagcgat tatctagaag aacagcgtaa
     7381 agcctaccag gcgtggtggg agagggttga atcgatcatt acttgtgcta gctcagaccc
     7441 caactgatag tctgttttgt cggaatactt acaatttctc attcaagtta gttaagtggt
     7501 attttacaaa tggagacaat gtaatgtctg gtcaaaataa cagcgacgag atttgcaatt
     7561 gattagtggc aggtttggtt ctaataacat aggagttatt gatgcagagc gagataatca
     7621 cgcagaaaaa tgggaaaggt atatttgatc gaaaggcttg gttaacagag tctaaaaaac
     7681 tgtatttatc tgcgaagctg ttgagaagtg aaggtgagcg aaacaaaaaa ttgcttcggg
     7741 cagcaagtaa gaaatctcct attgttcatg aatacatcga tatcgcatcg gcaactgatc
     7801 aaactagcag acttatgttg gggtatgctt ttgaaatgtt gttaaagtca gcgattcttc
     7861 taatgaatct cggtgcgaga aaaaaagcta ttgaaaatga gttttgtaat tatgggcata
     7921 aacttgattg tatggctgtt gatttaggtt tgccattaac cgttgacgaa ctgaagttat
     7981 tgaaagttgc gtctcgagat atagttttaa atgctcgata tcctattgga atagtggatg
     8041 ataataaata tataacagag ttgaatgaaa gaaatattca gttggcagat gaaaatattt
     8101 ttagggatat ggtcagtctg tatgacaaaa taaaaagtat agttgctaag tttgataatg
     8161 atgtagcgaa ttgtgcaaat ttcaatatgc ttagattgag tgagtttact ctctttatgc
     8221 ggaatggtgg tggactatca tcaagagcaa tagttatctt ttcggataaa tttccagaag
     8281 tcagtaaacg caagtcatat ttaaaaaaag ctatcgaaga acatgcaggc aaagtggctt
     8341 ttttatatac ttaccgctgg tcttcgtttt cattctttga agacacaggt aaaaaactta
     8401 tcccgcttgt ggagtagtac agatgagctg tgtcccgttg attattttat acttatgtta
     8461 gtagtatctt cttttggcac agagcaggta gttagattag gtttgactct gtgccatagt
     8521 ggtgtgtcag cttacatctg atctaaggca tattactcaa tgactcctgc aaacctgtaa
     8581 atcttttgtg atgcccattt atttgggcag gatttaatat caggatctgg aaagtctggt
     8641 ctgtatttct tgccagttct ccggtttacg ctgttccagc gaagcaccgt cgatattgaa
     8701 acgccacaga attcggcgac ttgttttgtt gtcattaagt tgttcattaa tttacctcct
     8761 gcggcggctc cggtagcggt atccagtggg ttacattgcg gctctgcgtt tcgaagaact
     8821 cctcaccatt gcggacaaca tcaaaaaact caccgtctcg atattgcgca taaagaacga
     8881 atgcgccatc acataaaata attacgtgct gaccgtcctc tggcattcgc tcactacagc
     8941 ttatccaacc atccggagtt acaggagggt tgcccgacag cttgttcaac ttgtaagtct
     9001 ggcttacagg ttcggcacca tgaagcatga cggcgcggca ggcgttccag ccttcatcaa
     9061 agccgactat gccattattt aaagacggaa gagcatccgg caccaccgac actggctgag
     9121 ccatatatag cggctgaaca taccagccct ttgataacca actgtcagca atgtttttgc
     9181 tcctggttat tgccggaata cctaagccat tgtctgaatg aagccacgcc accggctctg
     9241 cttccagtga tgccagagca atttcataag cacggcgctc aacattgtct cgcacgtcta
     9301 agctgccgat tcgttctttg atttctttaa tcagttcctt atcggtgaaa gtggtcatta
     9361 tgctccagcc tccggtgctt ttggcattac tgcccagtga gtgatattga cgttttcaag
     9421 gtccccgacc tgaaatgtcc actgccattc tccggtttct ttttgtcccc aggtgtacca
     9481 gagagaacgc cagccaatta gccagccttc tccgttagca tcgaataaca aaacactttc
     9541 atttgctggt ggcagttcag ttgacactgg tattactttg ttttcctgtg ctgcacattt
     9601 agcttcaagc gcatcgaatt tacgcaccag gtattcagca tctgtttcat ttactttcag
     9661 atctcgcggt acacatctcc cacgaagaaa cccttccatt tcgaaaacat tcatgcgcat
     9721 ttgcgtaact ccgataactc gttaaagcgt tccataaaca tcccgtaggc atggcccggt
     9781 gccagtggaa tcacgttgaa catctctgtt gccgggatac cttccagtac aggccagaaa
     9841 gagccatcat caagcccgag atcgcggcgt tcggttgcca gcatgatgag atcggcatat
     9901 ttcacgggcg tactcataac tgggggtaac ccgtatttct cacggattac ggcgtctatt
     9961 ttttcttcca tttgtttata gtcaggaaga aggcgtttca gtggtgcggg aatgtcctgg
    10021 caatacgctt ctgttgcatc atacattaac gcttcaaaag caaattcctg cggcaccagc
    10081 tggctgcaaa gaaccgcatg ttgggcgacg ctgtagaagt gcgaaagatg accggcaaag
    10141 cgacagatat ttgaaaggga aaccgcgata tcgttaatat cgatgtcgtc tttatttatc
    10201 ctgtcataat aaaaatgctt cccggaaaaa gttttaataa atgacatttt gttctccacg
    10261 tatatgcgct gcaccgcgct gaattctggt aaaaagaatc cctcaccatc cggcgattat
    10321 tgagtaaatt acgtttccat aaatgccccc gcaggggcat ttgcagtaat gaaatcaggc
    10381 ggtgaaagta ccaataaagg tttctacttt gctgtccttg aatttctcaa caagcagatc
    10441 acgaaattcg ttagccattt cttcctgcac cgcctccagc tgaataatgc gcagaaccag
    10501 tacaggacga tcgccagtga taatactgag gcgtaattta aacggacgtt ctttcagacc
    10561 ttcaaacgga acgcatttaa attcaaatgc cactggcata atgtctttgg tcttcgcttc
    10621 gacagactcc atcagggagc gtttgccgct gaagtcatta tcttcaaaat cagcggtctg
    10681 gtttgcttca atcgtgattt tacggacagc cgcagccgct tttgttgcct gaatagcgtc
    10741 accattagca tcaaagccca caagatagtc tgcccagtct tcaatccatt ctgctagtga
    10801 cttctgggag ttacgctcgc cgttaataga caacagagca gagaacggtg ctgtcttttt
    10861 cagtttgagt gtggcggtgt tatctgcgtg acctggttca tcaatagtac ccaggttaag
    10921 cacactgacg gctcgcatat tatcggcatc gataaagcag cgggtgcctt catctgcaag
    10981 atctttagaa taacgggtaa agtcatcgat gctggcagtg gaaagcgcac cacggaaacg
    11041 gaagcgattt aaattaaatt tttccagatc atgaatgcgg aaattctcag gcaatgccac
    11101 agcatcggca ccaatcttac tgataatttc attaacaccc tgagcagaaa taagggcatg
    11161 gatttgatta attgcggttg cgtctaagtt ctgagacata ataagtcctc actatataaa
    11221 gatattcagt gatgagataa ataatcggtt aattaagaac gatattaatg acctgctgcg
    11281 cggagttttc cgtcaggttc accggcaaga gtcagtaatt gtccctgatc ttcctgcaga
    11341 atagtcaggc gaccaccgcg attgacatac atcggcgttt cggtggtgtc ttcttcggaa
    11401 attttcccgc ggttagtcgg gcgaacatat gagagtttgt gtttgatttt cacacggttc
    11461 tcatcaaatg gttcgatttc caggttgagt gagaccttac ctttggtttt cgtgttcatc
    11521 acaccggaag cgacttcact gagaactgcg ccgattttgg tttcaaatac gccgccgtcc
    11581 agctccccaa taaatgcctg cacatcagta ctgcgttcgc tagccatttt tctgctccta
    11641 atcatatcga ccctgcaagg tcggttggtt tctccacaaa acagagaaga acacctgcgg
    11701 tggcagccgc ccggatggat tgggttatga gcccgtcgtc cggtgatgct cttctctgtt
    11761 ttgtaaaaag agcggtacca gccggaagca agtgtacaaa ctggtaccgc caaagcagtg
    11821 gctgttgtgg tggggttgtc actcaggcgt atggtcaacc tgacaatccg gtgtcctcaa
    11881 cggggaaaga gtaaccccgc catacttacc gccgcgccat ttcgcggatt accacaacgc
    11941 tgagagcact tagccagtta cggcaccaca ctttgtcgcg gttccataaa tgccctcatc
    12001 gttgcaccct ggtctcttcc caggcgtcaa accgaatcgc cacgctggtt aggcgtctta
    12061 tcagcatcat cattgacttg cacattccgg ctacctggtt tgtttgctcg agcaaggagt
    12121 ggattgtccc ctttaacgtc accagaccgc taacgacgca tgtgccatac gccgtgttac
    12181 aaccaaattt tgttttaatc ttgcctgtgt tatgtttctt ttagatacat tatgtatctc
    12241 atgggtacat tgtcaagcat aaaaaaacct gccgaagcag gttcataaat attgattagg
    12301 cctttattgt gtatcttctt ggttttcccg agaaaatcac tgtaccaatt atagagcaat
    12361 taccgttaat cttaatgtaa ggctcaggcc agtttgggtt taatgctttg agataacgct
    12421 gtgttccatc ttctatcaac cgcttgaagg tggtttcgcc tgaatcgtgc atcaatgcaa
    12481 taacgtcgtc accgtggcag gcagggactt caggatctac aaaaatcatg tctcccgggc
    12541 ggtactcatc aatcattgaa tcaccaatca cccgcaagat ataagtcatt tcgccacagg
    12601 gtacagggca gggataagtt tctgctgtgc tcaaatcaac ctcagaatag ccaacttctt
    12661 tccatgctcc ggcctgtacc catgatatga cagggactaa cgttatttgt ttgttagtaa
    12721 ttgaaacatc aggttttttt gtgatgtttg ttgtctggtg ttcttgatca agccatccga
    12781 caggcaggtc gaaacatttt tcgatgtgcc gtgccatgct gtcaccgata tttttagtag
    12841 caccatctcc cataaacctg ctggtctggg ttggctcgcg atcaatcatg gtggcaaagg
    12901 aagaattccc gccaacacca tctctcagtt ttctggcgtt agaccgccgg atgtcatgga
    12961 ctgttttcat aacgaaatta aaacctttgt accgataggg tacaagtatc ttgaaggttc
    13021 atctcaatca tgtaatatgt atatcggagg tacatattgt atgaaagcgt attgggactc
    13081 tttaaccaaa gaacagcagg gcgagttggc cggaaaagtt ggctcaacac caggctattt
    13141 acggctggtt ttcaatggtt ataaaaaagc cagttttgtg ctggctaaaa aacttgagca
    13201 atgcacgtca ggtgcaatta cgaaatctga cttaagaccg gatatctatc cgaaagatta
    13261 acagaacacc ttcaattttt aaccacagaa cgatgaggct aaccgtgggt aagcatcact
    13321 ggaaagtaga aaaacagcct gagtggtacg tgaaagctgt cagaaaaact atcgcggcgt
    13381 tgccgggggg gtacgctgaa gctgctgagt ggctagatgt aacagagaac gctttattca
    13441 accgccttcg tgcagatggc gatcagattt tcccgctggg atgggcaatg attttacagc
    13501 gcgcggctgg cactcactac attgcggatg ctgtcgcaca gtctgctggt ggggtgtttg
    13561 tatcgcttcc tgaaattgag gaagtagaga acgccgatat aaaccagcgc ctgctggaag
    13621 tcatcgaaca gatcgggagt tactcaaagc agattcgttc ggcaatcgaa gatggggtag
    13681 tggagccaca cgagcagaca gcaattaatg atgagttgta tctgtcaatt tcgaagctcc
    13741 aggagcatgc agcactggtc tacaaaatct tttgcgctcc agaaaagagt gacgcccgcg
    13801 agtgtgcagc tccgggcgtc gtggcgtttt gtgtctgtgg agaaactaac gcatgaacag
    13861 tttaacggca aataaccgtt tgtcgcaaca gctggtggtc agtgtcgctg aacacctgtt
    13921 gttacggcat gaatgcagat taccaaatca cctggctgta agtaaccaca gagaacttta
    13981 cctgactgtg gggggcgagt tgtgcaggaa cttaaccgct ggtttcgtga cggaagaggg
    14041 ctttatgtcc atgttattcg ttgggagcca gaaacacagc gcgttatcta tcttcgcaaa
    14101 gactacccgc atgagtgctt tagtcctttg tggaaattca ggcgtgattt tgttgagtgt
    14161 gaaggaccac cagcacattg attctgccat tccgggacgt tacactgttc aggcacctta
    14221 taaagcgggt gccgggattg gcgtcctgga aatgttatcg gcgatatatg acgcgccagc
    14281 gtctttttta tcgtctgcgt ctgtgcacac ccaaattatg gtgggctgga cgggggcacc
    14341 gaaaggtgcg ccggtttccg ataacgccgg ttacgccaac cccgttcagt tcaccaccag
    14401 cgaaattggc gtttccggtg gtgaaggtaa ttcactgtta tcggaggctg ccatcatggc
    14461 tactgtccca gccctcactc gtctgaatga tgaagactta cataaactca gttatgtaac
    14521 aactgcacta cgtgctctgc gcaaggtaac tctttcggat ccgcaggcgc atcaagttct
    14581 ggtagaaacc cttcttaact tgcaggctga acgtattcgt ctggcggata aggctaattt
    14641 tcatattcac cgtctcctga atatcagcgg agggcatcgt catgcttaat ccgttgatcc
    14701 tcaatatttg ccgtttgctt cagcgtaaaa aaacatcaat tcctacagtt gggcagtggt
    14761 acaccacacc tgcagggcat gttctacgtg ttagcctggt tgaccgtgaa tgccagaagg
    14821 tgatttgtga accgctgggc cgtaattacc gcgtcagtat gccgcttata gcctttcgct
    14881 ccggaaaaaa catgaagcat ctcggaggtg cagcatgagt atggagctga tggttaaagc
    14941 gatgaaaatt cgagtgggta atccattgcg aaaactggtt ctgatcaagc tggctgataa
    15001 tgccagcgat cagggtgagt gctggcccag ctaccagcat attgctgacc agtgcgagat
    15061 tagcaaacgt tctgtgatga atcatattgc ggccctttgt gagtccgggc tggtaaaaaa
    15121 agtcacccgg aaaggtgaaa aaggtaactc aagtaatatc tatctccttc atctggatgg
    15181 tgcaggagat tcactagggg gtagtgcaaa taattcacta tctggtgcag caaattcacc
    15241 aggtagtgca ggagttgcac cagggggtag tgcaggagat tcacccagaa ccagtcactc
    15301 ttttgaacca gtcaaagaac cagtcaatga
//
LOCUS       DAJVUN010000088        15309 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.088, whole genome shotgun sequence.
ACCESSION   DAJVUN010000088 DAJVUN010000000
VERSION     DAJVUN010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15309
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.088"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(74..4534)
                     /gene="mukB"
                     /locus_tag="OQQ76_002379"
     CDS             complement(74..4534)
                     /gene="mukB"
                     /locus_tag="OQQ76_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HCS1968850.1"
                     /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM
                     AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV
                     GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM
                     EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR
                     DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR
                     HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS
                     DHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEV
                     DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK
                     ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ
                     RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI
                     ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTS
                     SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG
                     GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLDGLTDCPEDLYLIEGD
                     PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS
                     ERFATLSFDVQKTQRLHQAFSRFIGSHLAVVFESDPEAEIRQLNSRRVELERALSNHE
                     NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ
                     FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY
                     SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT
                     KKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE
                     MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL
                     RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAAYQHLRERIRQDIIR
                     TDDPVEAIEQMEIELSRLTEELTSREQKLEISSRSVANIIRKTIQREQNRIRMLNQGL
                     QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
                     PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL
                     VMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE
                     NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS"
     gene            complement(4534..5238)
                     /gene="mukE"
                     /locus_tag="OQQ76_002380"
     CDS             complement(4534..5238)
                     /gene="mukE"
                     /locus_tag="OQQ76_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HCS1968851.1"
                     /translation="MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH
                     AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL
                     YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN
                     RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ
                     LNDETEENQPDSGEEE"
     gene            complement(5219..6541)
                     /gene="mukF"
                     /locus_tag="OQQ76_002381"
     CDS             complement(5219..6541)
                     /gene="mukF"
                     /locus_tag="OQQ76_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HCS1968852.1"
                     /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD
                     GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR
                     LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL
                     KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL
                     QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG
                     YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR
                     DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA
                     RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY"
     gene            complement(6538..7323)
                     /gene="cmoM"
                     /locus_tag="OQQ76_002382"
     CDS             complement(6538..7323)
                     /gene="cmoM"
                     /locus_tag="OQQ76_002382"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-oxyacetic acid(34)
                     methyltransferase CmoM"
                     /protein_id="HCS1968853.1"
                     /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ
                     KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA
                     QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM
                     VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK
                     HQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV"
     gene            7459..8238
                     /gene="elyC"
                     /locus_tag="OQQ76_002383"
     CDS             7459..8238
                     /gene="elyC"
                     /locus_tag="OQQ76_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope biogenesis factor ElyC"
                     /protein_id="HCS1968854.1"
                     /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTAKIFIS
                     IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI
                     NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD
                     LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL
                     NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGPSGEPRQE"
     gene            complement(8215..9108)
                     /locus_tag="OQQ76_002384"
     CDS             complement(8215..9108)
                     /locus_tag="OQQ76_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbJ family phosphotransferase"
                     /protein_id="HCS1968855.1"
                     /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM
                     ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA
                     PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN
                     QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMV
                     GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN
                     TGRFSRRNFDLASKSLLPWLA"
     gene            complement(9262..10008)
                     /gene="kdsB"
                     /locus_tag="OQQ76_002385"
     CDS             complement(9262..10008)
                     /gene="kdsB"
                     /locus_tag="OQQ76_002385"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HCS1968856.1"
                     /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER
                     IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP
                     MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI
                     PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYG
                     EKIHVAVAQEVPGTGVDTPEDLERVRAEMR"
     gene            complement(10005..10187)
                     /gene="ycaR"
                     /locus_tag="OQQ76_002386"
     CDS             complement(10005..10187)
                     /gene="ycaR"
                     /locus_tag="OQQ76_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YcaR"
                     /protein_id="HCS1968857.1"
                     /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV
                     LLETEARVLTADESKS"
     gene            complement(10239..11471)
                     /locus_tag="OQQ76_002387"
     CDS             complement(10239..11471)
                     /locus_tag="OQQ76_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaQ family DNA glycosylase"
                     /protein_id="HCS1968858.1"
                     /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLL
                     QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH
                     RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH
                     KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS
                     LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHADLLPLLERAL
                     AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ
                     LVGRMDAKMHRQTGILEVISLWLQEGIKPTTMLQKGLRQAITDFASWQQATRVTLGRC
                     PQGLFTDCRTGWEIDPVA"
     gene            complement(11508..12494)
                     /gene="lpxK"
                     /locus_tag="OQQ76_002388"
     CDS             complement(11508..12494)
                     /gene="lpxK"
                     /locus_tag="OQQ76_002388"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HCS1968859.1"
                     /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA
                     PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGSKAESYPLLLSADTT
                     TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE
                     IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL
                     RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV
                     SAGQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTSLASGN"
     gene            complement(12491..14239)
                     /gene="msbA"
                     /locus_tag="OQQ76_002389"
     CDS             complement(12491..14239)
                     /gene="msbA"
                     /locus_tag="OQQ76_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HCS1968860.1"
                     /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM
                     LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR
                     RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM
                     FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL
                     IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM
                     DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV
                     IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF
                     YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI
                     EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT
                     SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL
                     EHRGVYAQLHKMQFGQ"
     gene            complement(14276..>15309)
                     /locus_tag="OQQ76_002390"
     CDS             complement(14276..>15309)
                     /locus_tag="OQQ76_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309023.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HCS1968861.1"
                     /translation="VHLSGPLILEQGLWFLADRSLALLFWGLKSLPEGWINIAERWQW
                     LSFSPWFLLVVWRLNVWRTLPAMCVAVGLLMCWPLWQKPRPDEWQVYMLDVGQGLAMV
                     IARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILH
                     TWPMLWIRSPLNWEHHQPCVRGEAWQWQGLRFSVHWPLQASNDKGNNHSCVVKVYDGT
                     NSILLTGDIEVPAEQKMLSRYWQQVQTTLLQVPHHGSNTSSSLPLIQRVNGKVALASA
                     SRYNAWRLPSNKVKHRYQQQGYQWLDTPHQGQVTVNFSAQGWRISSLREQILPRWYHQ
                     WFGVPVDNG"
BASE COUNT         3613 a         4314 c         3765 g         3617 t
ORIGIN      
        1 ttatgtgcca tttttttagt gcagaaacgg agttttcgga aaaagaaaag gcggcattgc
       61 tgccgcctta attttaactc gcctgagaag gcgcttcgtc agttcctgga agcgtttcag
      121 ggagttgcgg cgcaaatcct cgcaggccga cgacatgaac atgttcggta ttctggaaga
      181 ctttacgcac cagtttatag gtggtgcctt tctccgggct gatattttcc ggcgctgcga
      241 tgatgagctg catttgtaaa cgctcacaca attcaaacag cgtggcgata gaacgagcat
      301 ccagtcgcgc tgcttcatcg aggaacagca gacggcaagg agagatatct ttaccgcgca
      361 ggcggcgaga ttcatcttcc cagctttgta ccaccatcac cagaatcgac ataccggtac
      421 caatcgcctc accggtcgac aatgcaccag actctgcgcg caaccaacca tcggaaccac
      481 ggttaacctc aacttccatt tccagatagt tgcggtaatc cagcagttct tcgccaatgg
      541 tctgcggcgt gcgctgcccc atatcaatct gcggattaag acgctgatac aatttcgcca
      601 acgcttccga gaaggtcaga cggttgctgt taaacagatc ctgatgctgc tcgtgctgtt
      661 cagagagcac atccagcagc atggcgtgcg tttcacgcac gttcacgttg aggcgcacgc
      721 tgttcacctg accaaacgat acgttctgca acccctggtt gagcatacgg atacggttct
      781 gctcgcgctg aatggttttg cgaatgatgt tcgccacgct gcgggaactg atctccagtt
      841 tctgttcacg ggaggttaat tcttcggtca gacggctaag ttcgatctcc atctgttcga
      901 tagcttccac cggatcatcg gtacgaataa tatcctgacg aatacgttca cgcagatgct
      961 gataagccgc cacgaagaac tgaattttac gctccggacg tttcggatct tccgacatgc
     1021 gcagcacgtc gcgcagatgt tcgttatccg ccaccgccag acgcagcgca cccaatgcct
     1081 tatccgacat agagcgcaaa tcatcagcgg agagataagc cagctcacga cggtgtaagc
     1141 ggcgctcaac gccgttatct ttcaccatgc gcatcaccgc acaccagccc gctttggcgg
     1201 tcactacctg ctcgcgcatc tcaaagtaat cccgctccag cttgcgcagt ttgcgggtca
     1261 ggttgtccat ctccgcttcg cagaaggtaa gcgctttttc cagttgattg cggcgtgaac
     1321 ggttattgct cagttgcgca tgcagctcgt cacggcgaat acgcgcccgc tcttctgccc
     1381 cgctatcagc acgcacgccg atatcctgca attcacgttg cagatcgttg agtagctctt
     1441 ttttggtgtc gtaagaactt ttcagcgaag ccagcacctg gttgtactga ctcaactgcg
     1501 ctgcgtgacc gcgcaacgct tcgcgagcgc gggtacgctc cgcttccgcc tgttccagac
     1561 gttcacgcag tttttcgttg agatcgctgt taccgctaag catttctgcc gagtcagagt
     1621 agctaaagtg cgcacgacgc tgcaccactt ccgtcagggc aaacgcctgc tgacgggcat
     1681 cgcgctgcat ctgttgagag tacgcgtaat cttcttttaa ctgttcgaac tgttccgggt
     1741 cgctctgcaa taccgaaacg atcggttcca gtttcgccag ttgattgcca aactgctgaa
     1801 caaaacgcgc ggcttcctgg gcttcatcca gacgttcgcg gatttcatcg acgcgatccg
     1861 ccaggctatc atcagccaac aggttgagac gcggcagaat gcggttcagc gccgtaacgc
     1921 cctctttcgc ctgctcaaac tgaatacgct gctgctggtt atcattttca tgattactta
     1981 acgcccgctc cagttcgacg cgacggctgt tcagttgacg gatttctgct tccgggtcag
     2041 actcaaacac aaccgccaga tgactgccga taaagcggct gaacgcctga tgcagacgct
     2101 gagttttctg tacatcaaag gagagcgtgg cgaagcgttc ggaaagcact tcacgctcgg
     2161 catggaggct ttcaatacgg ctttcacgcg cagcacgacc aaacagcggc acttccggga
     2221 aacgtgaata acgccactga cgatcggcga ttttcaccac taccgctttt tccagctcat
     2281 caacgctgaa cacgctgtca tcgaatgact gcggatctcc ttcgatcaga tagagatctt
     2341 ccgggcaatc ggtcaagcca tccaggtgtt cagttacctg tgacagatct ggcaccacga
     2401 tggcgtggcg tgatgggcca tacagcgctg agaagtacgg cgcatcttcc aggctaacgt
     2461 cgtcataaat ttctgacagc agcacaccac caaaacgctc cgccagcgcg ttcagacgct
     2521 gatcttcaga gccgccaggc tggcttaaac gttcgatctc ttcatcgacg gcgtttttgc
     2581 gcgcgcccac ttcatcgcgt tcaacaatcg cctctcgctc acgctccagc aactgttgca
     2641 gatattcggt gacgtcctgg ctggaggtaa actcttcgcc gcactgttcg ctcaactggt
     2701 tgagactgtt ttgcgctgcc agccaaaccg gcgcacgctg catcaaactc tgaatgcgag
     2761 actgcagctg ttcctgctcc tggcgcagtg ccatgcgctc ttcacgggcg ttagacacgc
     2821 tatcggaaag agaggcaatg cgtgcttcca gttcctgatg cagggcttcc agttcgtcga
     2881 tatcaaaatt cttgccctga cgtttgcaga aatctgccag cagacgctca gcttcttgct
     2941 gctcgcgtag acgctgttcc agttcgctta atcgcatccg cagcggctga acctgctctg
     3001 ccaggtgacg ctgatcgacc ccttcgcgca atagttcgcg agcgacatcc cacgcctcgt
     3061 tacgcgccag tgggccgttg attgccacca ccagctgata agcctgctca aactggctgt
     3121 gcgcggtttg cgccatgctc attttctgct caagagagag cattttttca gtcgcttcca
     3181 gctctttcgc ctggaaggtt tccagccatt cggcggcgct gtcggcggtt aagtccggca
     3241 gatggcacag ttctttggca cgattaagcg cagcaatcgc ctggttatac tggatcgcgc
     3301 gcgtttgctg gacgtccagc gcctgctggt agtcagcaag ctggcttttc agctcgtcca
     3361 cttccagttc ggcagcttcc gcgcgagcct cgttctcttc ctggcgttcg atggcttctg
     3421 ccaccacttc gttttgctct tccagacgga tctgcagctc atcgagatcc gcttcgtagc
     3481 gttcgatctt ctcctgctga cgcagtgcgg tttgcaccag gttcaggtga tcgctggccg
     3541 cctgataatc cgcttccaga tcgccttcgg caccgttgtg ctctgccagc tcacgcgcca
     3601 tatcgacgtg tttgtactgc tcagccgcca gttgctgacg cgaagtatgt aactcgcgac
     3661 gaaactccag ggctttgtcg agatggacac ggcgctcgtt ggcgtgacgc atgtagtccg
     3721 ccgccacgta gttggtagct tcgctgatca gatgcttaaa caggtcacgg tccgactggg
     3781 tgacacgaat cgcttccagc gtcatgcggt tttcacgcag cgccgcttcc atgtcctgga
     3841 acgctttacg cacgccgctg ttttccggca acaggtagtc gcgcagagaa cgggtaatgg
     3901 cactggagat cccgccatac agcgaagctt cgatcagacg atagaatttg ctacggtcag
     3961 atgcggagcg cagacgacgc gcgatgatgc ccagatcgaa catcagcgag tggtaatcgg
     4021 taatggagtt gaactgttta aactgcacgc cttccatcgc ctcgagcttg tctttcagct
     4081 cgttaagcgg cagcacgcgc gcctggcgtt cgttcagggt ttcggtcacc agctgtgtcg
     4141 gctgcaccga catcggcagt ccctgaatgg caaatggttt gatatccact ttacgatcgc
     4201 gtccggcaac ctgttgcaga cgcacaccga ccaccacgcg ctggtggcgc gagttaatgg
     4261 tgtcgagcat cgaataacag acacccgctt tcagcttacc gtgcagacct ttatcgcgcg
     4321 aaccgctggt ggccccggct tccgtagtgt tacggaaatg cagcagggtc aggtcgggga
     4381 tcagcgccgt aacgaacgcc gccatggtgg tggatttacc cgccccgtta ccgccagaaa
     4441 gcgtcgtgac cagctcgtca aggtcaaaag ttcgggcaaa aaagccgttc cagttaatca
     4501 gcgtcagtga gcgaaattta ccgcgttcaa tcattattct tcctctccgc tatctggctg
     4561 attctcttcg gtttcatcgt tgagttgcag atgattttca atcggcattg cttcgccatc
     4621 acgaatcagg cgacgctgtg cttcacgggg atcgtcgcca gcacgcacat cggctccgaa
     4681 gcggaacacc gattcggtaa tgcgaaactt gctgctgtcg tggcccataa accacaccat
     4741 gcctaaacga cgcagacggt tgagcgaaga acgtactttc tcctgcaact tctgacggtc
     4801 aacgtctgaa ccggttgaac ggttgttcac cagtttcagc agttttgctt catcggccag
     4861 ggtgagcagt tcgtcgtaca gttcctgctg ggtgaaaatc ccctcattcg ccagccgttc
     4921 cgggctgaga tagagataac agaggatttt cccgaccatc atatccagtt ccgacaagac
     4981 ggaacgcggg ataagagtgg tggaacgtgg gcgtaaatag aagaaccctt ccggtgcgcg
     5041 aataagctca acgttataac gcgcgtaaaa ctcttccaga tattcctgaa aatccatcag
     5101 gaatgcatga ttatccagtt cgtcgaggcc aatatggcgg cctgaacgta aggcgctgtc
     5161 cagcgccgga aataacggat tcgccagcgc ctgcgccagc ttaaccggca tcacttgttc
     5221 aatatttgtc gatgacatgc gcctgtacct tggctccgta atcattaatc ggctgccatt
     5281 tcgctggcag tccggtgaaa tctgcttgcg ctacgccaag acgtaccgcc tgatcaataa
     5341 caatacgcgc aacgtcaaag tgacgtgcac gcggatactg tgacagatat tcgcgtacca
     5401 ccagaccaag atccagcggc acttgtctgg ttttgtacac ggcaagttgt tcttcgatga
     5461 tcgccgccag ctgttcgcgg atctcgttaa actcttcgta ttccagatcc tcaggaagtt
     5521 ccccagtcac ttcttcatcg cgcagtgcca tctcttcgtc acgcatatcc agcagacgat
     5581 cggcattggc ataagttagc gcccacggct catcaaaata ggtttgtacc gactgacgta
     5641 accgctgagc aaagacgcgg tttttatcca tatcgatcgc ggtacgaata aatttgtgta
     5701 cgtggcggtc gtagccaatc cacaagtcga tggattgctg gccccaactg ataatacgat
     5761 cgagtttgct ctgcagatcg aacaccagac gatcgacgaa atgcagatcg tcatgggtca
     5821 tcgtcgcatc ctgaatgcgc aacagattag cctgcaattt gtcgcctgcc gcttccagcg
     5881 tatcctgcaa ttcacgcagc gttccggaag tttccgaaag caacaattca cagctggaaa
     5941 tcgccgcccg ccagtctttg ttcagcaact gggcgatatc gtccttcacc tgctgctgct
     6001 gttcgtccat cagacgttgc gtcaggtcga tactgtcgaa aatttctgct accgaatatt
     6061 tcagtggcgc atagacatta cggtgccagt gaaattcatc accgccctct tcggcggcat
     6121 ctgctgcgcg tttgagctca cccgccacaa tcgacaactg catagaaaga cgcagcgtag
     6181 aaaactcgcg ctgacggatg tagtagtcag taatgccgat gccgagcggc gtcagacggt
     6241 aaattgcgtt cccttccgcc tgctcgctgg taaagcggtt cagcagacgt tgacgcacca
     6301 tgtcgttgat cgcgttattg gcgcgcacgc cgatggtttc gctggtttgc tcaaacgcat
     6361 cactcacatg gcggaatgca tccaccagct cgccttcact catctcacca tccagacgct
     6421 cgccgttcag cgtggcaacc gccagcagaa aagagagtcg gtctaccggc agcgagatgg
     6481 agaagtcatt ttttctggcc caggcaacca gttcggggac tgtctgggaa aattcactca
     6541 tactttatcc ttgctctgcg gtttgcgcgc ggtgacatga atataacgcc ccagggtaat
     6601 atacggttcc tgacggcaat aacgcgtttc taattcaagt aatgcttcat agcagtcgcg
     6661 ctgctggtgc ttctcgcgca gataatcatg aaacacgcga acgcctgtct tacccataat
     6721 ttgccaacca gcttcttcca gccacagata aacctgcgcc gggtcgcgtg gataatctgg
     6781 cgaaagcgtc cgttttttct ttttcggcat tcccgcctgc acgtaatcaa aattcccggc
     6841 gaccatgtta tgcatcaaca aaccatgcgc attgtagaac attaacgaca acacgccgcc
     6901 tggacgcaac actgaccaca gggtctgcaa tacactgcgg ggatcggcca cccactcgag
     6961 caccgcatgg aacaatatca gatcaacggg cgtttccaaa tgcgaagcaa catcctgagc
     7021 ggcgcaatgt ataaattgca tgttgtcgct cacacctttt gcttctgccg cctgttttgc
     7081 gcggtcgatc atctgcgcag aaagatcgca taaaatgacc tgatgcccac gctcggccat
     7141 tttgattgcg gtctgccctt ctccaccgcc agcatccagc acacgcagtt tttgcgggcc
     7201 catttccgcc agcacgcgat cgagatcctg ccacagaata gcctgtcgaa gctgcccttt
     7261 ggtggtgccg taaatgttac gggaaaactt ttccgcaata tcatcaaaat tgcgatcctg
     7321 cattgctttc tccaccggtt ggctaagacg ttttctgata aagacgctat tttgtcacag
     7381 ccacggcgag aatgaacccg tctggtgtaa tatcgctggc gatcccttgc tatatggtta
     7441 aaaaaggaac cagaaaggat gctttttaca ctgaaaaaag tgattggcaa tatgttgctg
     7501 ccacttccgc tgatgttgtt aattattggc gctggcctgg cgctgctgtg gtttagccgt
     7561 tttcaaaaaa ccgcgaagat ttttattagc attgggtggc tggcactctt gttattgagt
     7621 ttgcaaccgg tagccgaccg cctgctgcgt cccatcgaaa gcacctatcc gacatggaat
     7681 aattcgcaaa aagtggacta tatcgtggtg ctcggaggtg gttatacctg gaacccgcag
     7741 tgggcaccga gctctaattt aatcaataac agtctgccac gcctgaatga aggtattcgc
     7801 ttatggcgcg aaaatccggg atcaaaactg atcttcacgg gaggcgtagc aaaaaccaat
     7861 acggtgagta cagcggaagt aggtgccaga gttgcgcaat cgctgggcgt gccgcgcgag
     7921 caaattatca ccctggattt gccaaaagat accgaagaag aagctgcggc agtgaaacag
     7981 gcgattggtg acgccccttt cctgctggtg acctccgcat cacatctgcc gcgggcgatg
     8041 atcttttttc agcaggaagg gttaaatccg ctaccagccc cggcgaatca gttggccatc
     8101 gactcgccgc ttaatccgtg ggaacgggca atcccttctc cggtctggct gatgcatagc
     8161 gatcgtgttg gctatgaaac gcttggccgc atctggcagt ggctgaaagg tccgtcaggc
     8221 gagccacggc aagagtgatt ttgatgccag atcgaagttg cgccgactaa atcgtccggt
     8281 attaaccagt tgcgcaactt catcccataa cacatacaac caacgccgcc agatgaacga
     8341 ctccgccact ggcgcgcgtt gcaggtaact ccagagcaaa tcttccgcca gagaattatc
     8401 cattagtcgg aacagttcgt attctcgcgg tgcccaaagc attagtcccg gcccgaccat
     8461 cgccagtaac tgatcgctgc gcgaatcttt cagcatgctg cgtaaacaga agttaccgtg
     8521 aatcaacaca caattgtcgt taaagccttc aaataatgcc gggagacatt cgcgagtgcg
     8581 aaacaggatc cgcttatcct gcatcgtcag accggtgtta ttgaactgat tgagcgtggt
     8641 ccatagcact tcaacatgtt gccggtacca tgagggccag aaattttcct gagtattgtc
     8701 gaccgcgccg acgcaaccgc gactgtcctg acggtgccag gccagtaagg cttcaacgat
     8761 ttggtctttg agctgttccc agcgttctgg tgttcgggct ggtgcctcca ccgaaacacc
     8821 acgcatccgc tccagtagca ggacatcagg gccggggtgt tcttcatgcg tcatcacacc
     8881 ataaatagtc ggcatacgga cagtcccact tcttgccagc atggtggttt tccatgccag
     8941 ttgtcgggct tttccgggcg tactaaagct tcttgccatt aacggcattg ggtttccctg
     9001 gctgtcatac aaagcccaca acgccgtatc cgctttttca ttgacgcact caatacgact
     9061 gagtttttcg cccagtaaat ggcttaattc ggcacgcagc tgttccattc agattaccct
     9121 cataaaagct actgctttca taatgagcgc caatataaaa gatgtcacct gaatgagatc
     9181 aattgttgaa aagaaaaatt gaggaaaatc gtaacggtac gacactcctc ccaaaattgg
     9241 ctgaagtgtc gtgaagtgaa attagcgcat ttcagcgcga acgcgctcaa gatcttcagg
     9301 ggtatccaca cctgtgccag gaacttcctg agcaacagca acatggattt tttcgccgta
     9361 ccacagaaca cgaagctgct ctaacatttc gatgtgttct aacggacttg cctgccagtt
     9421 gacgtaacga cggataaagc ctgcacggta gccataaatg ccaagatgac gcaggaagtt
     9481 atcgccaacg gtttcaaggc cttctgcaaa acgatcacga tcccaaggaa tggtggcgcg
     9541 tgagaagtac agtgcatacc cttcagcgtc gagaaccact ttcaccgcat tcgggttaaa
     9601 cgcttcttcc gcattgtgga ttggcaccgc cagagtcgcc atacccacct gacgctgagc
     9661 gaggttatca gcaacctgac gaatgattgt cgcagggatc atcggttcat caccctgcac
     9721 attaacgatc accgtgtcgt cgctgaatgc gcatttttcg acaacttccg ccagacgttc
     9781 tgttcctgac tgatgatcgg cgcgcgtcat acatacttca ccgccagcgg cttcaacggc
     9841 gcgggcaaca tcctcatgat cggttgccac gatgatgcgc tcggcacctg attcacgcgc
     9901 gcgttcaaga acatgaacaa tcatgggttt gccgttaata tcaaccaatg gtttaccggg
     9961 cagacgcgtg gacgcgtagc gcgcgggaat aatgaccaca aaactcatga tttactctca
    10021 tcagcagtca gcacgcgggc ttccgtttcc agcaacactg gaatgccatc gcggagcggg
    10081 aaagccaggt tatccagttt gcaaataagc tcttgttttt cctggttata ccaaagtttt
    10141 ccgttgcaaa ccgggcaggc aatgatttca agcaaacgat gatccatagt tcctccagat
    10201 ggatcgggtt atgaatgcat aaatcttatc ataatcattt atgcgacggg gtctatttcc
    10261 cagccagtgc ggcaatcagt aaagagacct tgcgggcagc gtcctaatgt cacccgcgtt
    10321 gcctgctgcc agctcgcgaa atcagtaatc gcctgacgta accctttttg cagcattgtc
    10381 gttggtttaa tgccttcctg taaccacaga gagataactt caaggatgcc tgtctggcga
    10441 tgcattttgg catccattcg cccaactaat tgcccacgat gtaataatgg cagaacaaaa
    10501 tagccatact ggcgtttcgg cgctggggta tagcactcca gccggtagct aaaatcaaaa
    10561 agctgctctg cgcgtttgcg atcccagaca acaggatcaa aaggcgaaag taccgcgctg
    10621 tgcgttgcag tgagctttcc ggccagcgca cgctcgagta gcggcagcaa atcagcatgc
    10681 agccaaagat tgcccaattt ttcaacatgc acagcaatga tttgctgctg ttcagccctc
    10741 gcttcgcgcc acgccgccag tgccggacgt ttcagccgat agtaatctgc cagccactgt
    10801 tcgcggaata ttcccaggct acgcgcactg ttatccagca tgatgatttc tgcttctgtt
    10861 tgcgaaacga gatcgcgctc atcatcccag tcaggcatga cacggtgggt taaatcataa
    10921 acgcgctgga agttgcgccg ttcaatcacc atcacctttc cggcagtaaa taaaccttcc
    10981 agatgccgtt tatgcggctt ccattcccac cagccgcttg cacctttacg aggatgctca
    11041 aaatcggctg aacgtaccgg ccccttatca tgaatatgct gaattaactg tgcaatttcc
    11101 gcctcatgtt cctgcatcca ggcgtctttg tatttccagc ccattttttc aggtgccagc
    11161 attcggtggc gaataagacg aaagtcgcta cgcggcataa agcaggcttc atgcgcccag
    11221 tattccatta attcgccacg cgccagagac tcatccagcc actgggcagg ataatttccc
    11281 agacgactga aaagcaccag atatggacta cgggcaacaa tattgatggt atcgatttgc
    11341 agcaaggaca tgcgggagat cgttgccgga atatcctcca acgacgctcg acggcggggt
    11401 ttgtttaaca ggccttgtgc ggcaaggtga agattacgcg catcagcaag ggagaggtgc
    11461 ggcagcgaca ttcatgactc catcaatcga acgctgccgc ggcgtaacta gttgccagaa
    11521 gccagcgagg ttagttgcgt aagcagtttc gctggttcat cacctgaaag ctgtgcgtct
    11581 acaggcaaat accaccaatt ttcttctgca aaggcccggc atttcaccgc atctttttca
    11641 gtcattacca gcgtttgccc ggcgcttacc aacgcactga catccgcatg gttcaaagac
    11701 tgatgatcgg ccagcggtac acatttttcc ggttgtacgc cacacatctt cagcgtggca
    11761 aaaaagcgcg gcggatgccc aatccccgcc atcgccacta catgttcaag ctgagcaacg
    11821 tcacaacgcg taccggtacg taaattcacc gcctgacccg gcagcagatg catggggatt
    11881 tcaccgctgc gagggacacc gccgttgacg attaccgcat caaccgactt taagcgcccc
    11941 gctcgctcac gcattggccc cgccggcaac caccagccat tgccaaagcg acgcacacca
    12001 tcaataacga caatttccac atcacgcgcc agacggtaat gctgtaaacc gtcgtcggtt
    12061 acgatgatct gcacatcagg gtgttgcgcc agaatggctt ttaccgcatc agaacgaacg
    12121 ggagaaaccg caacaggcgc atcagtgcgt tgataaatca acacaggttc atcacccgcc
    12181 tgtgctgttg tggtatctgc cgacaataac agcggataag attcagcctt actaccatat
    12241 ccccgcgata cgacccccac gcgaataccg cgctgttgca actgttccac cagccagaca
    12301 acgaccgggg tttttccgtt gccgcctgcg gtgagattac caaccacgac aaccggtacg
    12361 ggggcacgcc aggcgcgctt cagttttagt ttatagcaaa gacggatcgc gccactcacc
    12421 aggccataca accaggagag tggcagcaat agccgccaca aaggggattc accagaccag
    12481 attttttcga tcattggcca aactgcattt tgtgaagttg cgcgtaaacg ccgcggtgct
    12541 caagcaaatc gttatgcgta ccgcgttcca caatgacgcc atcctcgacg accacgattt
    12601 cgtctgcctt ttcaatggta gacaagcggt gggcaatcac cagagaggta cggtttttct
    12661 gcaactcatc cagtgccgcc tgaatcgcac gttcggattc ggtatccaga gccgaggtag
    12721 cttcatccag aatcagaatc gggctatcac gcagcaaggc tcgagcgata gcaatacgct
    12781 gacgctgacc gccagagagc agcacgccgt tttcaccaat cactgtatcg agaccgttat
    12841 ccatcttatt gatgaagtcc atggcgtagg ccatacgcgc cgcttcttca atttgctcac
    12901 ggctgtactg ttcagtccgt gcgtaagcaa tgttgttagc aaccgtatcg ttaaacagat
    12961 ggacattctg cgacaccaga gcaacctggt tacgtaacga cgccagggta tactcgcgca
    13021 gatcgtgacc atccatcagg atttcgcctt catcaatatc gtaaaaacga gtgatcaggc
    13081 tggcgatggt tgatttacct gaaccagagc gtccaaccag agcaaccgtc ttccctgccg
    13141 gaattttcag gttgatgtta cgcaatgcag gtacgtcacg tcccggataa gtaaaggtga
    13201 cattgcggaa ttccacgtcg ccagtcgcac gctcgatcac gcgcttacct tcgtctttct
    13261 cctgctcact gtccagaatg gtaaacagcg tctgacaagc cgccataccg cgctggaact
    13321 gggcgttaac gttggtcagt gatttcagcg gacgcatcag tgcaatcatt gaagagaaaa
    13381 caacggtaat cgtaccggca gtcaggctat ccatgacact tgggaagctc gccgcataca
    13441 gaacaaacgc cagcgccaaa gaggcgatca gctgaatgat cggatcagag atggaagagg
    13501 ctgaaaccat tttcatcccc tgaagacgca ttcggttgct gactttatca aagcgtttcg
    13561 tttccacttc ctgaccaccg aaaatcaata cttctttgtg gcccttcagc atttgttcgg
    13621 cgctggtggt cacctgcccc atggtgttct gcatgttttt actgatgttg cgaaaacgct
    13681 tcgatactac gcgaatcgca atcgaaacaa tcggtgccag cacaatcaaa atgatcgaca
    13741 gttgccaact gtaatagaac atcatgatga acaggccgat gattgacgca ccttcacgca
    13801 caaccgttat cagtgcgccg gaagaagaag aagcaacctg ttcggaatcg taggtgatac
    13861 gtgacaacag cgtccccgtt gactgtttgt caaaaaatga aaccggcatt cccatcatgt
    13921 gaccaaacag gcggcgacgc atggtcatta ccacctttcc tgatacccag gagatacagt
    13981 agctggagac atagctggtg ataccacgta aaatcatcag cccgatcacc accagcggca
    14041 tccacaccag cacggagcga tctgttttac caaagccatc atcaagaagt ggcttaagga
    14101 gcgataacat gaaggtatcg ctggctgcgt tgaggattaa cgctacgccc gccacgatca
    14161 gacccgcttt aaaaggcgca atggttggcc acagtcggcg gaacgtctgc cacgtagaga
    14221 gatctttgtc gttatgcatt caaaaaacca gcatttgttg aaatagccgc atattctacc
    14281 cgttatccac tggcacgcca aaccactgat gataccaacg aggtaaaatt tgctctctga
    14341 ggctgctaat ccgccagcct tgcgctgaaa aattgaccgt cacttgaccc tgatgtggag
    14401 tatcaagcca ttgatatcct tgctgttgat agcgatgctt aactttatta gagggcaatc
    14461 gccatgcgtt atagcgcgat gccgatgcga gtgccacttt tccattcact cgctgaatta
    14521 atggcaacga tgatgaggta ttactgccat ggtgaggtac ctgaagcaat gttgtctgca
    14581 cttgctgcca gtaacggctt agcatctttt gttcagcggg gacttcaata tcaccggtta
    14641 gaagaatgct attcgtcccg tcataaacct taaccacaca ggaatggtta tttcctttat
    14701 cgttgctagc ttgtaaaggc cagtgcacgc tgaaacgcaa tccttgccat tgccacgctt
    14761 cgccacgcac acagggctga tgatgttccc agtttaacgg acttctgatc cataacatcg
    14821 gccatgtgtg caatattgag tccagccctc cccggtgatc cagatgttca tgactcagaa
    14881 taacgccttc cggttcaaga ttatgccagt ggagccaggg gataatcagt tgttgcccac
    14941 tatccccttc gggccaggcc agtcctgtgt catagagaat cgctttgccg tttctggcta
    15001 tcaccattgc cagcccttgc ccgacatcaa gcatgtacac ctgccactcg tcaggtcgag
    15061 gtttttgcca cagcggccag cacatcagca agcctacagc cacacacatt gctggcaacg
    15121 ttcgccagac gtttaatcgc cataccacca gtaagaacca tggggaaaat gatagccatt
    15181 gccaacgttc agcaatgttg atccaccctt ctggcaaact ctttaacccc cagaaaagta
    15241 aagccaaaga ccggtcggca agaaaccata acccttgctc caggattaac ggcccgctta
    15301 aatgcacaa
//
LOCUS       DAJVUN010000089        15234 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.089, whole genome shotgun sequence.
ACCESSION   DAJVUN010000089 DAJVUN010000000
VERSION     DAJVUN010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15234
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.089"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(128..553)
                     /gene="arsC"
                     /locus_tag="OQQ76_002391"
     CDS             complement(128..553)
                     /gene="arsC"
                     /locus_tag="OQQ76_002391"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-dependent arsenate reductase"
                     /protein_id="HCS1968862.1"
                     /translation="MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL
                     VKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLG
                     TRLCRPSEVVLEILPDAQKGAFSKEDGEKVVDEAGKRLK"
     gene            complement(566..1855)
                     /gene="arsB"
                     /locus_tag="OQQ76_002392"
     CDS             complement(566..1855)
                     /gene="arsB"
                     /locus_tag="OQQ76_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite:H(+) antiporter ArsB"
                     /protein_id="HCS1968863.1"
                     /translation="MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPG
                     DIPVVWNIVWNATAAFIAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLG
                     AAVAALFANDGAALILTPIVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLV
                     NIVSADFFGLGFREYASVMVPVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAI
                     KDPATFKTGWVVLLLLLVGFFVLEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLR
                     GAPWQIVIFSLGMYLVVYGLRNAGLTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSI
                     MNNMPTVLVGALSIDGSTASGVIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLSQ
                     KNMTISWGYYFRTGIIMTLPVLFVTLAALALRLSFTL"
     gene            complement(1910..2263)
                     /gene="arsR"
                     /locus_tag="OQQ76_002393"
     CDS             complement(1910..2263)
                     /gene="arsR"
                     /locus_tag="OQQ76_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="As(III)-sensing metalloregulatory
                     transcriptional repressor ArsR"
                     /protein_id="HCS1968864.1"
                     /translation="MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQ
                     PKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKIQAIVRN
                     LARQNCSADSKNIYS"
     gene            3003..3086
                     /locus_tag="OQQ76_002394"
     CDS             3003..3086
                     /locus_tag="OQQ76_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Damage inducible protein"
                     /protein_id="HCS1968865.1"
                     /translation="MIDKAIIVLGALIALLELIRFLLQLLN"
     gene            complement(3140..4492)
                     /gene="gorA"
                     /locus_tag="OQQ76_002395"
     CDS             complement(3140..4492)
                     /gene="gorA"
                     /locus_tag="OQQ76_002395"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HCS1968866.1"
                     /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN
                     VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENV
                     LGKNNVDVIKGFARFVDAKMLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF
                     FALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVM
                     NAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAG
                     VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHL
                     DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK
                     LVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR
                     "
     gene            complement(4564..5406)
                     /gene="rlmJ"
                     /locus_tag="OQQ76_002396"
     CDS             complement(4564..5406)
                     /gene="rlmJ"
                     /locus_tag="OQQ76_002396"
                     /EC_number="2.1.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase"
                     /protein_id="HCS1968867.1"
                     /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAG
                     AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPL
                     IARQLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGL
                     ILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMLHDLEATGIRK
                     ILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSW
                     IVPE"
     gene            5609..7651
                     /gene="prlC"
                     /locus_tag="OQQ76_002397"
     CDS             5609..7651
                     /gene="prlC"
                     /locus_tag="OQQ76_002397"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HCS1968868.1"
                     /translation="MTNPLLTPFELPPFSKILPEHVVPAVTQALNDCRENVERVVAQG
                     APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ
                     HEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS
                     ELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPS
                     YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFE
                     NYAFKSLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVDELQPWDI
                     AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDVDVWHPDVR
                     FFELYDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVAYLTCNFNR
                     PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW
                     CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFR
                     PDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA
                     FSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFKRFRGREPQLDAMLEHYGIKG"
     gene            7659..8411
                     /gene="rsmJ"
                     /locus_tag="OQQ76_002398"
     CDS             7659..8411
                     /gene="rsmJ"
                     /locus_tag="OQQ76_002398"
                     /EC_number="2.1.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709277.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1516)-N(2))-methyltransferase
                     RsmJ"
                     /protein_id="HCS1968869.1"
                     /translation="MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLEL
                     RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD
                     AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD
                     ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVK
                     RPDYAPPLANVTTPNAVVTKGHRFDIYAGTPV"
     gene            complement(8460..9929)
                     /gene="dtpB"
                     /locus_tag="OQQ76_002399"
     CDS             complement(8460..9929)
                     /gene="dtpB"
                     /locus_tag="OQQ76_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpB"
                     /protein_id="HCS1968870.1"
                     /translation="MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQ
                     LGFSQEQAFVTFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSL
                     LKPDLVFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIAL
                     SLAPVIADRFGYSVTYNLCGAGLIIALLVYIACRGMVKDIGSEPDFKPMSFSKLLYVL
                     LGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLML
                     EAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVLASPILADIYT
                     HLGNKGKDLSMPMKFTLGMFMCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG
                     ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLET
                     LPVYTNVFGKIGLVTLGVAVVMLLMVPWLKRMIATPESH"
     gene            complement(10247..10681)
                     /gene="uspA"
                     /locus_tag="OQQ76_002400"
     CDS             complement(10247..10681)
                     /gene="uspA"
                     /locus_tag="OQQ76_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HCS1968871.1"
                     /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS
                     DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY
                     DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE"
     gene            11071..11406
                     /gene="uspB"
                     /locus_tag="OQQ76_002401"
     CDS             11071..11406
                     /gene="uspB"
                     /locus_tag="OQQ76_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="HCS1968872.1"
                     /translation="MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYV
                     DGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVV
                     SLIALMIWH"
     gene            complement(11650..13149)
                     /gene="pitA"
                     /locus_tag="OQQ76_002402"
     CDS             complement(11650..13149)
                     /gene="pitA"
                     /locus_tag="OQQ76_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter PitA"
                     /protein_id="HCS1968873.1"
                     /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY
                     TRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLL
                     AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLI
                     VSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA
                     IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQ
                     HPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSL
                     DQRSQMRRIMLCVSDTIDKVVKIPGVSADDQRLLKKLKSDMLSTIEYAPVWIIMAVAL
                     ALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVL
                     SSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWLSLQFL"
     gene            13381..14583
                     /locus_tag="OQQ76_002403"
     CDS             13381..14583
                     /locus_tag="OQQ76_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HCS1968874.1"
                     /translation="MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILM
                     SGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF
                     CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLELNGMTVGCEKLVIATG
                     GLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITA
                     ENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPN
                     QSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGY
                     RTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ
                     DLIAAKSS"
     gene            complement(14899..>15234)
                     /locus_tag="OQQ76_002404"
     CDS             complement(14899..>15234)
                     /locus_tag="OQQ76_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2776 family protein"
                     /protein_id="HCS1968875.1"
                     /translation="QGIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRR
                     TCSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVS
                     ILEAGSAKK"
BASE COUNT         3841 a         3904 c         4000 g         3489 t
ORIGIN      
        1 acgctctaca tatttcatgc catatattga atttgcacgg ttttgtaggt cggataagac
       61 gcgttagcgt cgcatccgac ataaacaaag cgcactttac caactatcgg cagtggatat
      121 cgccgcttta tttcaggcgc ttacccgctt catcaaccac tttctcgcca tcttccttgg
      181 agaatgcgcc tttttgcgca tctggcagaa tttccagcac cacttctgaa gggcggcaca
      241 ggcgagttcc cagcggcgtc accacaatcg ggcgattaat cagaatcggg tgctgaagca
      301 taaagtcgat taaccgatcg tcagtaaatt tatcttccgc aaggcccagc tcctcatacg
      361 gttcgacgtt tttacgcagc agcgcgcgta cggaaatccc catatcggca atgagtttga
      421 ccagttcatc gcgcgttggc ggagtttcca gataatggat aatggtcggt tctgtgccgc
      481 tgttgcggat catctccagc gtattacgcg acgtgccgca ggccgggttg tgataaatgg
      541 taatgttgct catatcagta tctcattaca aagtgaaaga gagacgtagc gccagcgcag
      601 ccagcgtcac aaacagcaca ggcagggtca tgataatccc tgtacggaag taatatcccc
      661 agctgatagt catattcttc tgtgaaagta cgtgcagcca gagtagtgta gccaggctac
      721 caattggggt aattttcggt cccaaatcgc agccaatcac attggcataa accatcgctt
      781 ctttgataac gccagatgcc gtgctgccat caatggacaa cgcgccaacc agtaccgtcg
      841 gcatattgtt cataatagaa gagaggaagg cggtgaggaa tccggtgccg agcgtcgcgg
      901 cccacaggcc gttatccgcc agcacgttga gtacgccaga aagatattcc gttaatccgg
      961 cattgcgcag gccataaacc accagataca tgccgagcga gaagatgaca atttgccagg
     1021 gggcaccgcg caggacttta cccgtattaa tcgcatgacc gcgtttagcg acgacaaata
     1081 atatcagcgc gcccacagct gcaatggcgc tcaccggaat gccgagcggt tccaggacga
     1141 aaaatcccac cagcagaagc agtaaaacaa cccagccagt tttgaacgta gcaggatctt
     1201 tgatcgcttc tgcgggagat ttcagcagcg ccatatcgta gttctgcgga atatctttgc
     1261 gaaaatagag atgtagcatc accagcgtgg caacaatcgc ggcgatatcc accggcacca
     1321 tcaccgaggc gtattcgcga aagccgaggc caaagaaatc agcggaaacg atattcacca
     1381 ggttggagac aataagcggc aggctggcgg tatcggcaat gaatccggcc gccatcacga
     1441 acgccagcgt cgtgccttta ctgaatccta aagccagcag catggcgatg acaatcggcg
     1501 tcaaaataag cgctgcgcca tcattggcaa acagggcggc aacggcagca ccgagcagga
     1561 caatccaggt aaacagcaag cgaccacgac cattacccca gcgtgagacg tgcagcgccg
     1621 cccattcaaa aaagccggac tcatccagca gcaggctgat gataatgacg gcaataaacg
     1681 cagccgtcgc gttccagacg atattccaca ccaccggaat atcacccgga tggaccacgc
     1741 ccgtaactaa cgccagtact gcgccgagcg ttgcactcca gccgatgcct aaacctttcg
     1801 gctgccagat aaccaataca atggtcagga caaagatagc gcctgccagt aacataatgc
     1861 ctcctggata aaacacatgc gaaaatacat atgtgtttag ctaaattttt taactgtaaa
     1921 tgttcttact gtctgcggaa cagttttgtc gagccaggtt gcggacaatt gcctgaatct
     1981 tttcctgttc acatcgccag gcttcatcaa ttattttcgc cgcccatgct ggaatatgcg
     2041 gcgataagcg gtaatgaacc catttacctt gcttgcggtc cagcaatagc ccgctttcac
     2101 gcagcaatgc caggtggcgg gagatcttgg gctgcgactg gtcgagagca gtgcagagat
     2161 cgcagacgca taactctccc agttcgctga gcagtaaaac gatgcccaga cgggtttcat
     2221 cagcaagaat tttgaacaat tggatgggta acagaaatga catattgcgc tcctgattgt
     2281 tgcatgtagt gtctctcttc gaagcggata agtcaaaaac atatatgatt taacgaatgt
     2341 gtaagtgcag aggaaggtaa taggtgtgaa ttttgagttg gctattcatt tgaaaggagg
     2401 tctgaatcag gacgtaaaaa aaccgacttt gcgtcggttt tttactttcc agccctgagt
     2461 tggtggctct ggctggagtg agagagttct tatctaacag ctcaatacta ttagccagtg
     2521 gctaacattg caagaattag cgatttcttc agctggcgga gggagcactt cggtatatat
     2581 cgcagtgacg atttatatac tttcactggg tcatcgtcat attaagcctt gtccgaatcc
     2641 ggatgtaaaa aaaccgactt tgcgtcggtt ttttactttc cagccctgag ttggtggctc
     2701 tgactggagt gagatagcca tcatctaacg catcaatgct aataccatac tgaaactatt
     2761 gcaaggacgt gctggtttta taacctgcat gtactgtatg attatccagt tagctctgag
     2821 gcattttcac tctggcaatg cgcataaacg ctttcaaagt cctggtcaga agtacgggtg
     2881 gtgccgttaa ctgatgctct ggccggagtg agagagttct tatctaacaa tgagacatgc
     2941 gccgtgacag gcagtggatg agtaagcgga tgcattctca ctccatcgca tggagaaaac
     3001 gggtgattga taaagcaatc atcgttctag gggcgttaat tgcgctgctg gaactgatcc
     3061 gctttctgct tcagcttctg aactgatagc ggaaacgtaa ttaagggcta agagcacact
     3121 actcttagcc ctttaacatt taacgcattg tcacgaactc ttctgccgcc gttgggtgaa
     3181 tggcgacggt attgtcgaag tcttttttgg ttgcccccat cttcagcgcc accgcgaagc
     3241 cctgcaacat ttcgtccata ccaaagccaa tgccgtgaat accgacaatc ttctcttccg
     3301 atccaacgca caccagcttc atgcggcacg gctggcggtg agtggtgacg gcggtataca
     3361 tcgcggtgaa agaggattta tacactttca cctgatcgtc gccatactgc tcgcgcgcct
     3421 gcggttccgt taaaccaaca gtaccaatcg gcggatggct gaagaccacg gtcggaatgt
     3481 tgctgtaatc cagatgctca tccggcttgt tattaaacag gcgttcagag agacggcgac
     3541 ccgctgcaac tgccaccggt gtcagctcca ctgcacccgt gttatcgccc accgcgtaaa
     3601 taccttcaat gttggtgttt tgatatttat cgacgacgat atagcctttt tcgttggttt
     3661 taacgccagc ggcttcgagg ttgatgttgt cattggcagg ctcgcgacca atcgcccaaa
     3721 tcaggcaatc caccgtttca ctgcgaccat cttccagctc cagcgtcagg ctaccatcgg
     3781 catttttcac taccgctttc gggatggcgt tggtgtgcag ctgcgggcct tcggcgttca
     3841 tcacttcgac cagcgtttcg gaaatcatcg ggtcgaagct gcgcagcggc gcatgtttac
     3901 gcacaaacag atgcgttttc gcgccgaggc cgttaatcac gcccgccagc tcaacggcga
     3961 tgtaacccgc gccaacaacc gccacgcgct ctggcaaagc aggaagggcg aagaagccat
     4021 cagaatcaat accgtattcc acgcccggaa tatccgggtg gctcggacga ccgcctgtgg
     4081 cgatcagaat atgatcggcc gtgatggttt cgccgtttac ctccagcatt ttggcatcaa
     4141 cgaagcgggc aaagcctttg attacatcaa cgttattttt accgagcacg ttttcatagg
     4201 aagtatgaat acggtcgata taggcggtac ggctggcgat caacgtttcc cagttgaact
     4261 tgttgatggt ggtatcgaaa ccataatcag ggccgtacat atggatcgct tcacggattt
     4321 gcgccgcgtg ccacatcact tttttcggca cgcagccgac gttcacgcag gtgccgccca
     4381 gctctttggc ttcaatcagt gcgcatttct ggccgtacat agccgcgcgg ttgatggagg
     4441 ctataccgcc gctgccgccg ccgatggcga tgtaatcata gtgtttagtc atgacagagt
     4501 gtccttatcg ttgattaccg cgattgtagc gcgagacgta ataggtgcca gcaatggctg
     4561 caattactcc ggcacgatcc agcttacggt ggcgtgcccg gtgcctgccg gaaccagttt
     4621 gctgtgcagc cacggcagca cgttattcat ctgctgttcc agtttccacg gcgggttaat
     4681 cacaatcatg ccggaagcgg tcatgccacg gcgatcgctg tctggcagta ccgccagttc
     4741 aatttgcaga attttgcgaa taccggtcgc ttccagatcg tggagcatgc gcttaatttg
     4801 ctgacgcagc accaccggat accacagtgc gtaagtacca gtggcgaaac gtttgtaacc
     4861 ttctgctatc ccgctgacca ccgcctgata gtcggttttc atttcatacg gcgggtcgat
     4921 aaggattaaa ccacggcggg aaaccggcgg cagtttggcc ttaagctgct ggaaaccatc
     4981 ggctttttcg acgcgcgcac ggctgtcttt ctgaaattca gaacgcagca acgggtaatc
     5041 gctcgggtgc agttcggtca gttgcaggct gtcttgttcg cgcagtagct ggcgagcaat
     5101 caatggcgaa ccggggtagt aacgcaactg accgctacgg ttgaagtgtt ttaccacatt
     5161 gatgtacgcc tccagttctg cgggcaaatc gtcctgctgc cagatacggg cgatgccttc
     5221 gagatattcg ccggtacgct cggcatgttc gctgcctaac tgataacgcc cggcccctgc
     5281 gtgggtgtcg agatagagaa acggtttatc tttctctttc agcgactcga tgatcaggct
     5341 ctgaacggta tgtttaagga cgtcggcgtg gttgccagcg tgaaagctgt ggcgataact
     5401 gagcatgggt aaaggtgttc cggtaagtaa aaatcggccc gtattcgggg cgcacaaaag
     5461 cgtatcagga cagtataccg aaaagaggcc gccgccgcga aagcgtaacg tttctcattg
     5521 aaattcacta cacttaaccc catgctacac acattatgta aagcgcctgt tgagcgcttc
     5581 cttaacctct ttaaccagga ctgcgcgaat gacgaatccg ttactgactc cctttgaatt
     5641 gcctccgttt tctaaaattc tcccggaaca tgtcgttcca gccgtgactc aggcgctgaa
     5701 cgattgccgc gaaaatgtgg agcgcgtagt agcgcaaggg gcaccgtaca cctgggaaaa
     5761 tctctgccag ccgttggcgg aagtggacga tgtgttgggg cgtatcttct ccccggtcag
     5821 ccacctgaac tcggtgaaaa atagcccgga actgcgtgaa gcctacgagc aaaccctgcc
     5881 gctgctgtcg gaatacagca cctgggtagg gcaacatgaa gggctgtata aagcgtaccg
     5941 cgacctgcgc gatggcgatc attacgccac gctgaacacg gcgcagaaga aagcggttga
     6001 taacgccctg cgtgattttg aactctctgg cataggtctg ccgaaagaga aacagcagcg
     6061 ttacggcgaa attgcgaccc gtctttctga actgggcaac cagtacagca acaacgtcct
     6121 cgatgcgaca atgggctgga ccaaactcgt taccgacgaa gcggagctgg cggggatgcc
     6181 tgaaagcgcg ctggctgcgg caaaagccca ggccgaagcg aaagagctgg aaggctacct
     6241 gctgacgctg gatatcccaa gctacctgcc ggtaatgacc tactgcgaca accaggcctt
     6301 gcgtgaagag atgtatcgcg cttacagcac ccgcgcctcc gatcaaggcc cgaacgccgg
     6361 taaatgggat aacagcaagg tgatggaaga gatcctcgct ctgcgtcacg aactggcgca
     6421 actgctgggc tttgaaaact acgcctttaa atcccttgcc actaaaatgg cagaaaaccc
     6481 gcagcaggtg ctggatttct taaccgatct ggcaaaacgc gcgcgtccgc aaggcgaaaa
     6541 agagctggca caactgcgcg ccttcgccaa agcggaattt ggcgtcgatg agttgcagcc
     6601 gtgggatatc gcgtactaca gcgaaaaaca aaaacagcac ctctacagca tcagtgacga
     6661 acagctgcgt ccgtacttcc cggaaaacaa agcggttaac ggcctgtttg aagtggtgaa
     6721 acgtatttac ggcatcaccg ctaaagagcg taaagatgtt gatgtctggc atccggatgt
     6781 acgtttcttc gaactgtatg acgagaacaa cgaactgcgc ggcagcttct acctcgatct
     6841 gtatgcccgt gaaaacaagc gcggcggggc gtggatggat gactgcgtag gccagatgcg
     6901 taaagctgac ggttctctgc aaaaaccggt cgcgtatttg acttgtaact tcaaccgccc
     6961 ggtaaatggt aaaccggcgc tgttcactca cgacgaagtg atcaccctgt tccacgagtt
     7021 cggtcacggc ctgcaccata tgctgacccg catcgaaacc gctggtgttt ccggtatcag
     7081 cggtgtgccg tgggatgcgg tcgaactgcc gagtcagttt atggaaaact ggtgctggga
     7141 gccggaggcg ctggcgttta tctctggtca ctatgaaacc ggcgaaccgc tgccgaaaga
     7201 gttgctggat aaaatgctgg cggcgaagaa ctaccaggcg gcgctgttta ttctgcgcca
     7261 gctggagttc ggcctgttcg atttccgcct ccatgccgag ttccgcccgg atcagggtgc
     7321 gaaaatcctc gaaactctgg cagaaatcaa gaaactggtt gccgtagtac cgtctccatc
     7381 ctggggccgt ttcccgcacg ctttcagcca tattttcgcc ggtggttatg ccgcaggtta
     7441 ctacagctac ctgtgggctg acgtactggc ggcagatgcc ttctcgcgct ttgaggaaga
     7501 gggcattttc aaccgtgaaa ccgggcagtc gttcctcgac aacattctga gccgtggcgg
     7561 ttcagaagag ccgatggatc tgttcaaacg cttccgtggt cgtgaaccgc agctggatgc
     7621 gatgctggag cattacggca ttaagggctg atcattcagt gaaaatctgc ttaattgatg
     7681 aaacaggcgc cggagacggc gccttatctg ttctggcggc ccgctggggg ctggagcacg
     7741 atgaagacaa cctgatggcg ctggtgttaa cgccggaaca tctggaattg cgcaagcgtg
     7801 atgagccaaa acttggcggc atctttgttg attttgttgg cggagcgatg gcgcaccgac
     7861 gcaaattcgg cggtggtcgc ggtgaggcgg tggcgaaagc ggtgggcatt aaaggcgatt
     7921 atttgccgga tgtggtggac gccaccgcag ggctggggcg cgatgccttt gtactggctt
     7981 cagtcggctg ccgcgtgcgg atgctggagc gtaatccagt ggttgccgcg ctactcgacg
     8041 acggcctggc gcgtggttat gcggatgcgg aaatcggcgg ctggttgcag gagcggttgc
     8101 agttaattca cgcctccagc ctgacggcgc taaccgatat taccccacgc ccgcaggtgg
     8161 tctatctcga tccgatgttc ccgcataagc agaaaagcgc gctagtgaaa aaagagatgc
     8221 gtgtctttca gtcgctggtg ggaccggatc ttgatgccga tggattactg gagcctgcac
     8281 gcttgctggc gaccaaacgc gtggtggtaa agcgcccgga ctacgcgcca ccgctagcga
     8341 atgtcaccac gccaaacgcg gttgtgacta aagggcatcg ctttgatatc tatgcaggta
     8401 cgcccgtgta aaagtaaagc agggtagcga taacgctacc ctgctttctg caagaataat
     8461 taatggcttt ccggcgtcgc aatcatgcgt ttcagccacg gcaccatcaa cagcatcact
     8521 actgcaacgc ccagcgtgac cagaccaatc ttaccaaaca cgttggtata gacgggcaac
     8581 gtctcaagcg gatcggtaat gttgtccggc accgcggtaa atgttgccac atagccgccc
     8641 agcaagaacg cggcagcctg cgtcaggaac cacatcccga gaataaagcc catcaaatgc
     8701 tgcggcacca gggcagcaat catcgccagg ccaagggcgc taataaacag ttcacctaag
     8761 ctctggaata agtacaccag cacgataaac catggcgatg tcagcccttg tgcatccgca
     8821 aaccacattc ccgcagctgc cgccgtcaaa aagcccagtg agcacataaa catgccgaga
     8881 gtaaatttca tcggcatcga gaggtctttg cctttgttac ccagatgcgt gtaaatgtct
     8941 gccagtattg ggctggcgag taccacccag aacgggttaa gcgcctggaa gctgaccggg
     9001 ttgatggaaa aaccgagaat ttcatgatgc acgttgttga tggcaaagaa gttcagcgat
     9061 gttggcatct gggcgtagag aatgtaaaac accaccgctt cgagcatcag gacaaaggcg
     9121 acaaacattt tattgcgccc ggttttatcc agcttgaatg cctgacgaaa gaagatgatg
     9181 gtgacgacga tggagagaac aatcagcacc agattggcga cttctacgtt gtgcatcagc
     9241 catgcacata cgaagatcat caccacgctg ccaagtaata cgtacaacag tttgctgaag
     9301 ctcatcggct tgaagtcggg ttcagaacca atgtctttca ccattccacg acaggcgatg
     9361 taaaccagta atgcgataat taaccccgcc ccgcacaggt tgtaggtgac tgaataaccg
     9421 aatctatcag cgatcacagg ggccagcgat aacgctatca acgagccgat attgatcgac
     9481 atatagaaca gggtgaatgc gccatcaagc cgcggatctt tcggcggata gcacttcgaa
     9541 agcaagctgg ctgggttagc tttaaacagg ccgttaccga cagcgatagt ccccagggcg
     9601 atgaaaacca ggtcaggctt aagtagcgac atgccggtca tgaagtagcc aatcgccagc
     9661 acaagtgctc cgagaacaat ggtgcgtttg gtccccagca ggtggtcgcc gacatagccg
     9721 ccaatggaaa tgaggccata gaccagcgca gcaaaagcac caaaagtgac aaaagcctgc
     9781 tcttgcgaga atccaagctg tttaacgaag aaaaccgcca gtacgccctg cacgccgtag
     9841 tagccgaatc gctcccataa ctcgacaaaa aagatcatga aaaatgggcg aggttgctgc
     9901 agcatcccca tgggtgttgt tgtattcata tttattaacc ttccaatacc atcctgaaaa
     9961 gtatgaacgc gtaagggata acgcgcgaaa aagtttacat ctgtcagaga ttcttaatat
    10021 tgatgcggtg aatagattaa tacactatta caacagaaaa taaccagcta atcacactaa
    10081 tgatggaaaa tatgatggtg ttaaatgttg tattggcagg agattttgat tgcgtacgca
    10141 gatcgtaggc cagataaggg gtttacgctg catcaggtaa caaggcgcgc caaaaagcaa
    10201 aacgcccgca tatgcgggcg ttcaggaaca cgtcgtggag ggaagattat tcttcttcgt
    10261 cgcgcagcgg aacaatcagc atatcaacgt gaacggtgtt gatcagctga cgtgcggaag
    10321 acatcagttt gctccagaag tcctggtggt gaccacaaac caccagatcc atatcgtatt
    10381 tcttgattgc atcgaccaga acctggccca ggtcgccgct gccgctcagg gtttcagtga
    10441 ttgggtagcc tgcattagtg gaaagctcgg tcagcgcatg atgtgtctct tcagagatgc
    10501 gtttctgcat atcacccaga ttcacatcaa taagcccggt gtataggtca gagtagttta
    10561 catctacgtg gatcagagaa actttcgcat tgtaggggcg agccatagag actgctttct
    10621 ctaccagaac tttgctttcc ggggagagat cgaccgcgat gagaatgtgt ttataagcca
    10681 tagtgttact ccttccataa agttgtcgat gactggccag ctagcgtttc ttgtgccgtt
    10741 acgtcacccg cgtcctgcga actacgtgcg cggggctaac ccagccgtaa agattcagtg
    10801 ttaagaccat ccttacctta tagcgacccg gatgatccgt caatccgcct tgcttacccg
    10861 ttagataaac aaattttcga catgaatata ttgatagtgg ttaaccttct ggaaaaaaaa
    10921 caacctgatc tcctacacta tctatagagc cgctcggatg ttggtcacca caaaagcggt
    10981 ttctccagga cctggtgtta actgattggc agcgtatcgg gagcggtagc cccgggtgga
    11041 actccgcggg caggtcgccg gggaggaggt atgataagca ccgtcgcatt attttgggct
    11101 ttatgtgtcg tttgcattgt taacatggcg cgctatttct catcactacg cgcgttgtta
    11161 gtggtactgc gtaactgcga tccattgctc tatcaatatg ttgatggagg gggctttttt
    11221 acctcacatg gccaaccaaa caaacaggtg cgtctcgttt ggtatatcta tgcccaacgt
    11281 tatcgcgatc atcacgatga tgagtttatt cgccgctgtg agcgggtgcg tcggcagttt
    11341 attctgacta gcgcattgtg tggtctggtg gtggtcagcc tgattgcatt gatgatttgg
    11401 cattaagcac ttcagcaata ataacgcata aaaaaagcgg gccagtaaac tgacccgctc
    11461 gagactgatt acaaacgcaa aattgcctga tgcgctacgc ttatcaggcc tgcataatct
    11521 ctgcaatcta ttgaatttgc atgtttttgt aggccggata aggcgttcac gccgcatccg
    11581 gcatgaacaa agcgcactat gtcacaatct gaagcgggcc agctgacccg ctcgttttgg
    11641 tgcgtacgat tacaggaact gcaaggagag ccagtacagc ccgccggaaa gcagtaccgc
    11701 agccggaagg gtaaacaccc aggccatcag aatgctggtc acggttttac gctgtaagcc
    11761 gccaccatct accaccatcg tccccgcgac agaagaggag agtacgtgag tagtggaaac
    11821 cggcatcccg gtataactcg ccaggccgat agacactgcc gccgtcatct gggcagacat
    11881 cccctgagcg taggtcatgc ctttcttacc gattttctca ccgatagtcg ttgccacacg
    11941 acgccagcca atcatcgtac cgatacctaa cgccagcgcg accgccatga tgatccacac
    12001 cggtgcatac tcgatggtgc taagcatgtc ggacttcagt ttcttcaaca ggcgctgatc
    12061 gtcagcactc acgccaggta tcttcactac tttgtcgata gtgtcagaaa cgcacagcat
    12121 aatgcggcgc atctggctac gttgatcaag cgacagcttg tcgtagcttt ccacatcggt
    12181 agttaacata cctttcaggc ggttgagcgc gttaatggta ttcgacggat ggcaatggaa
    12241 ctccgcgggt tgcgttgcgc cagcttccgg agccggtact aactgatcag caccggtagc
    12301 ctgtttcagc agcgcaggat gctgctcaaa gtaagcttcg acgttgttga tggcatcacg
    12361 ggtacgggtg atttcgtagc cagtggcatt catattcacc acgaagcctg ctggtgcgac
    12421 accaatcaat accaacataa ccagaccaat gcctttctga ccatcgttcg cgccgtgcga
    12481 aaacgccaca ccgatagcgg aaaggatcag cgcaatacgc gtccagaacg gcggcttttt
    12541 cttgccgtct ttcttttcac gctccgctgg ggtcaggtgg atacgggcgc gtttcttggt
    12601 gccgctccag tagcgacgca gcaagaaaat cagaccgcca gcaaacacca ggccgacaat
    12661 aggggaaacg atcagagaac cgaaaatact taatactttc gggatattga gtgcatccac
    12721 cactgacgtc ccggtcatca acgcattggt taaaccaatc ccgatgatcg cgccaatcag
    12781 tgtatgagag ctggatgcag gtaaaccaaa gtaccaggta cccaggttcc agataatcgc
    12841 cgccagcaac atagagaaca ccatggcaag gccatgagac gatcccatat taagcagcag
    12901 atccgtcggc agcatatgca caatggcata ggcaacactc agaccaccca gcaaaacacc
    12961 caaaaagttg aacaccgccg ccataaccac ggcgagctga gaacgcatcg cgcgggtata
    13021 gataacggtt gccacggcgt tggctgtgtc atggaaacca ttgatggctt cgtagaacag
    13081 cacaaaagcc agtgcaagca ataataacag cccggtatgc aaatccaggc cagcaaacaa
    13141 atgtagcata ggacgttacg ccattttgag gacatgaacg cggcgcatta tcagtgactt
    13201 tcgcggcgcg ggcaaagtga aatatagact ttttttgatt tgcctcctgt atggatttca
    13261 ctcaaaaaat aattatctta tataattcag gcaaatactt ccttttagta atattgatgc
    13321 tggtgtgacc actgaggaat ctttacaatt cacgcccgtt ttttctaaga ggagcgcaac
    13381 gtggaaaggt ttgatgccat tattataggc gctggtgcgg cgggtatgtt ctgttctgcg
    13441 ctggcaggtc aggcaggacg ccgggttctg ctgatcgata atggtaaaaa accagggcgc
    13501 aaaatcctta tgtctggcgg tgggcgctgc aactttacca acctttatgt cgaaccaggc
    13561 gcttatctga gccagaatcc gcatttttgt aagtctgcac tcgcgcgttt tacccagtgg
    13621 gatttcattg atctggtcaa taaacacggc atcgcctggc acgagaaaac gttaggacaa
    13681 ctcttctgcg atgactccgc gcagcagatt gtcgacatgc tggtggatga gtgcgagaag
    13741 ggcaatgtaa ccttcagatt gcgtagcgaa gtgctgagtg tggcgaagga tgaaacaggc
    13801 ttcacgcttg aactgaacgg catgactgtc ggttgcgaaa agctggtcat cgcgaccggt
    13861 gggctgtcaa tgccggggct gggcgcatcg ccgtttggtt ataagattgc cgaacaattt
    13921 ggcctcaacg tgctgccgac ccgtgcgggt ctggtgccat tcactctgca taaaccgttg
    13981 ctcgaagagt tacaggtgct ggcgggcgtg gcggtgcctt ccgtgattac cgctgaaaac
    14041 ggcaccgttt tccgtgagaa cttactcttc acccaccgcg gcttatctgg accggcggtg
    14101 ttgcagattt ccagctactg gcaaccgggt gaatttgtca gtatcaatct gctaccggat
    14161 gtggacctcg aaaccttcct gaatgagcag cgtaacgcac atccgaatca gagcctgaaa
    14221 aacacactgg cggttcatct accgaagcgg ttggttgaac gcttacagca actcgggcaa
    14281 atcccggatg tttcgctaaa acagctcaac gtgcgtgacc aacaggcact gattagcaca
    14341 ttgaccgact ggcgcgtaca acccaacggc actgaaggct atcgcactgc cgaagtgacg
    14401 ctcggcggcg tggacaccaa cgaactctct tcacggacga tggaagcgcg caaagtgcct
    14461 gggctgtact tcatcggcga agtgatggac gttaccggct ggctgggggg ctataacttc
    14521 cagtgggcgt ggtcgagtgc gtgggcttgt gcgcaggatt tgattgcagc gaagtcgtcc
    14581 tgacctgtta cctaaagatg aaaattatta gagccgcatt aaaaatgagc taattttgat
    14641 agtggctatc ttgtgattat tttctaatga gcccgtgaac tgaaaccctc caagcttaat
    14701 ataaggtgga aggaaagatg attgaaaact cacccagtgg ccagatcttt ataaaatatg
    14761 aacaggctga aaaagacagt aactttgttg tttttttatc cttaaccact atgcattaat
    14821 gctgcgttat ttcatgatgc ctaagaaaaa ccagcgttac gcaaatggtc aacgctggtt
    14881 ttatccggta cgttgcaatt attttttagc agaacctgct tctaatattg aaacgattga
    14941 gaacaacgta aagcataccg ctcccaaacc gaccaaaacc cgcgaaggaa taaaatatcc
    15001 catgtcggtc tgcgccattt ccgcaagaaa cgatgccagg aaaaggcaaa acaggcaggt
    15061 gaagacggga atcatcggta ttctgttggc taacgaacag gtacgtctcc ataccagtgc
    15121 cagtagccag acttttgaga atatgctgta acagatcatt ccgaggcaaa taagaataat
    15181 gccgggagcc agtcgggcgc ttgcatcgga actgactaag acgtatatcc cctg
//
LOCUS       DAJVUN010000090        15233 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.090, whole genome shotgun sequence.
ACCESSION   DAJVUN010000090 DAJVUN010000000
VERSION     DAJVUN010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15233
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.090"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..988)
                     /locus_tag="OQQ76_002405"
     CDS             complement(<1..988)
                     /locus_tag="OQQ76_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HCS1968876.1"
                     /translation="MKITTVGVCIICGIFPLLILPQLPGTLTLAFLTLFACVLAFIPV
                     KTVRYIALTLLFFVWGILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQ
                     GRRIFPAPGLVLYGEYLPQAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPL
                     IGRFLQASVIEPNCSLRAQYLASLQTTLQPYMWNAVILGLGMGERLSVPKEIKNIMRD
                     TGTAHLMAISGLHIAFAVLLAAGLIRGGQVFLPGRWIHWQMPLIGGICCAAFYAWLTG
                     MQPPALRTVVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWL"
     gene            complement(1195..1479)
                     /gene="ihfB"
                     /locus_tag="OQQ76_002406"
     CDS             complement(1195..1479)
                     /gene="ihfB"
                     /locus_tag="OQQ76_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HCS1968877.1"
                     /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE
                     IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG"
     gene            complement(1639..3312)
                     /gene="rpsA"
                     /locus_tag="OQQ76_002407"
     CDS             complement(1639..3312)
                     /gene="rpsA"
                     /locus_tag="OQQ76_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HCS1968878.1"
                     /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS
                     ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY
                     EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD
                     QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE
                     GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD
                     IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK
                     GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV
                     DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE"
     gene            complement(3423..4106)
                     /gene="cmk"
                     /locus_tag="OQQ76_002408"
     CDS             complement(3423..4106)
                     /gene="cmk"
                     /locus_tag="OQQ76_002408"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HCS1968879.1"
                     /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA
                     LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ
                     VAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML
                     QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ
                     YARQKLALA"
     gene            complement(4279..5042)
                     /gene="ycaL"
                     /locus_tag="OQQ76_002409"
                     /pseudo
     CDS             complement(4279..5042)
                     /gene="ycaL"
                     /locus_tag="OQQ76_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706828.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase YcaL"
     gene            complement(5211..6494)
                     /gene="aroA"
                     /locus_tag="OQQ76_002410"
     CDS             complement(5211..6494)
                     /gene="aroA"
                     /locus_tag="OQQ76_002410"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HCS1968880.1"
                     /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL
                     LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL
                     AAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG
                     NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ
                     HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF
                     ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI
                     YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS
                     LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA"
     gene            complement(6565..7653)
                     /gene="serC"
                     /locus_tag="OQQ76_002411"
     CDS             complement(6565..7653)
                     /gene="serC"
                     /locus_tag="OQQ76_002411"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HCS1968881.1"
                     /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK
                     EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW
                     AATAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID
                     ETPDFGKDVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA
                     NIACPSILDYSIFNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL
                     YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM
                     RASIYNAMPLEGVKALTDFMVEFERRHG"
     gene            complement(7852..8544)
                     /locus_tag="OQQ76_002412"
     CDS             complement(7852..8544)
                     /locus_tag="OQQ76_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HCS1968882.1"
                     /translation="MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRG
                     VRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLE
                     DLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQIS
                     VYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANP
                     EWTKASRAKRVT"
     gene            8674..10434
                     /locus_tag="OQQ76_002413"
     CDS             8674..10434
                     /locus_tag="OQQ76_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HCS1968883.1"
                     /translation="MTQTFIPGKDAALEDSIARFQQKISDLGFQIEEASWLNPVPNVW
                     SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH
                     YPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR
                     QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE
                     IPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA
                     HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL
                     FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD
                     IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG
                     LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ
                     TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH
                     QSLLKAYEKLQRAKAAFWAK"
     gene            10840..11697
                     /gene="focA"
                     /locus_tag="OQQ76_002414"
     CDS             10840..11697
                     /gene="focA"
                     /locus_tag="OQQ76_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HCS1968884.1"
                     /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF
                     ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS
                     GRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT
                     FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP
                     MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV
                     IYLRENDHH"
     gene            11752..14034
                     /gene="pflB"
                     /locus_tag="OQQ76_002415"
     CDS             11752..14034
                     /gene="pflB"
                     /locus_tag="OQQ76_002415"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HCS1968885.1"
                     /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL
                     AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQT
                     EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTI
                     RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS
                     FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW
                     ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS
                     IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG
                     VDEKLKMQVGPKSEPIKGDLLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE
                     ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ
                     FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR
                     RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR
                     KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF
                     NSLTKEQQQDVITRTFTQSM"
     gene            14226..14966
                     /gene="pflA"
                     /locus_tag="OQQ76_002416"
     CDS             14226..14966
                     /gene="pflA"
                     /locus_tag="OQQ76_002416"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HCS1968886.1"
                     /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD
                     THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT
                     CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK
                     NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK
                     LDGVKPPKKETMERVKGILEQYGHKVMF"
     gene            complement(15048..>15233)
                     /locus_tag="OQQ76_002417"
     CDS             complement(15048..>15233)
                     /locus_tag="OQQ76_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968887.1"
                     /translation="FVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHA
                     SYYQSLLSQVRDMVDAL"
BASE COUNT         3878 a         3889 c         3588 g         3878 t
ORIGIN      
        1 agagccataa actttgcgag agaatggcaa caggatccat cagcaaaatt gccgccagac
       61 aacatatcca tacatcccag ccactccact gtcgcccact taacttaagc attccccacg
      121 tagcaagcgc caccacggta cgcaatgcag gaggttgcat tcccgtcaac caggcataaa
      181 aagcagcaca gcagattcca ccaattaatg gcatttgcca gtggatccag cgcccaggca
      241 gaaaaacttg cccaccgcga atgagtccgg cagccagcaa caccgcaaaa gcgatgtgca
      301 atcccgatat cgccattaaa tgcgccgttc cagtatcacg catgatattt ttgatttctt
      361 tggggacgga taaccgttcc cccataccta aaccaagaat aaccgcattc cacatatagg
      421 gttgcagcgt tgtttgtagt gacgccagat actgtgcacg caggctacaa ttcggttcaa
      481 tgacacttgc ctgcagaaag cggccgatga gcggctgatg ctgggcaatg gcataacgct
      541 ggctatcaaa gccgccatca ttaagttggc catgaactgc acgaactttg agtttcattg
      601 accattgttg tccagcacaa accgcttgcg gaagatattc gccatacagc acaaggcctg
      661 gcgcagggaa tatacgtcga ccttgtagat gagtaatttg accgtaatga gtggtcatgc
      721 cgtcagttgc agtgatctca acaattgcat cctgcgtcgc gccagttaag gtttctcctg
      781 cccacaaaat ttgctttgct gataatatgc cccaaacgaa aaacagcaac gtcagcgcga
      841 tataacggac ggttttaaca gggataaatg ccagtacgca ggcgaagaga gtcagaaacg
      901 caagggttaa tgtcccaggc aattggggca aaatcagcaa cggaaaaatt ccgcaaatta
      961 tgcatacgcc gactgtcgtt attttcatgc acccctccct gtttatggaa agtgtgcaac
     1021 tttgttgagc ggttgtctgg tgggaatttt gcgttccccg aggcacattc agaagaattt
     1081 aacgaaaggg tgaaaactgc tcaaaactct gcgaggcagc ttccagttcc tgattagaga
     1141 aatgaaaaaa gcacccgaca ggtgcttttc tcgcgttcaa gtttgagtaa aaacttaacc
     1201 gtaaatattg gcgcgatcgc gcagttcttt accaggttta aagtgaggaa cgtattttcc
     1261 ttccagttct actttatcgc cagtcttcgg attacgtccg gtacgtggtg cgcggtagtg
     1321 caaagagaaa ctgccgaaac cgcggatttc aatacgctcg ccctgcgcaa gagtcgaggc
     1381 catatgctcc agcatctctt ttactgcatc ttcaaccgtc ttggcgggaa tgtgcgattg
     1441 ctgggtggca agtctttcta tcaattctga cttggtcatg attcctccgg ttccttaaag
     1501 gcaaattaag cggctgctgt tgctgcattg attaagggcg gccgtagccg cccttagtgc
     1561 ttgattacag gacgaaacct gcaatctgtc aagtaaactc aacaaacttc ggaataaaaa
     1621 tcccgaagag tcagagaatt actcgccttt agctgctttg aaagcttcag ccattgcgtt
     1681 gttggagaag tttgcatctt cctgtttgtt aacagttgcg attgcatctt tctcgtcagc
     1741 ttcgtctttc gcacgaacag acaggctgat tgcgcggttt ttacgatcaa cgccggtgaa
     1801 tttagcttca acttcgtcgc caacgctcag aaccagggta gcgtcttcaa cgcggtcacg
     1861 ggatgcttca gaagcacgca ggtaaccttc aacgccgtca gccagttcta cggttgcgcc
     1921 tttagcgtca actgcagtta ctttaccggt tacgatagcg cctttcttgt tcagagcaac
     1981 ccagttgttg aacggatctt ctgcgagctg tttaacgccc agggagatac gttcacgttc
     2041 tgcgtcaacc tgcagaacaa ctgcagcgat ttcgtcgcct tttttgtatt cacgaactgc
     2101 ttcttcgcct gcaacgttcc aggagatgtc agacaggtga accaagccgt cgatgccgcc
     2161 gtccaggccg atgaagatac cgaagtcagt gatagacttg attttacctt caacacggtc
     2221 gcccttgttg tgggtttccg cgaactgctg ccacgggtta gctttgcact gtttcagacc
     2281 cagggagata cgacgacgtt cttcgtcgat atccagaacc ataacttcca ctacatcgcc
     2341 aacgttaaca actttggacg ggtggatgtt tttgttggtc caatccattt cggaaacgtg
     2401 taccaggcct tcaacgcctt cttcgatttc aacgaagcag ccgtagtcgg tcaggttggt
     2461 cacgcgacca gtcagtttgg taccttccgg ataacgttta gcgatagcta cccacggatc
     2521 ttcgcccaac tgtttcaggc ccagggatac acgggtacgt tcgcggtcga acttcagcac
     2581 tttaacagtg atttcgtcgc ccacgttgac gatttcgctc ggatgcttaa cgcgtttcca
     2641 ggccatgtca gtgatgtgca gcaggccgtc aacgccgccc agatcaacga atgcaccgta
     2701 gtcagtgagg ttcttaacga tacctttaac ttccatgcct tcctgcaggt tttccagcag
     2761 ctgatcgcgc tctgcgctgt tttcggattc gataacggca cgacgagaaa caacaacgtt
     2821 gttgcgcttc tgatccagct tgattacttt aaattcaagc tctttgcctt ccaggtgcag
     2881 agtgtcacgc accggacgaa cgtctaccag agaacctggc aggaacgcac gaataccgtt
     2941 cagctcaaca gtgaagccgc ccttaacttt gccgttgata acaccggtaa cagtttcagc
     3001 atcttcgtaa gctttttcca gcgtgatcca ggcttcgtga cgtttagctt tctcacggga
     3061 cagcagagtt tcaccgaagc cgtcttctac tgcgtccaga gcaacgtcaa cttcgtcacc
     3121 tacctggatt tccagctcgc cctgggcgtt tttgaactgc tcagccggga tggcggactc
     3181 agatttcaga ccagcgtcaa ccagtactac gtctttgtcg atagcaacaa caacgccacg
     3241 aacgatagaa cccgggcggg tttcgatttc ttttaaggac tcttcaaaga gttgagcaaa
     3301 agattcagtc atgtttaatc ttcaggttta tatttaacgt ccacctagct ccatgccgga
     3361 tggggttgtt taacataccc gctgtcattc cattgcaacg ggggtactgc aaattcggtc
     3421 gcttatgcga gagccaattt ctggcgcgcg tattgtagcg ctttttcaat cacttgctca
     3481 atgcttaagg tggtggaatc caacactaaa gcatcggctg ccggaaccag tggcgctacc
     3541 gctcggttac gatcgcggtc gtcgcgttct ttgatctcgg ccaaaaggcg ctcaaagtta
     3601 acactaaagc ccttctcctg caactgtagc atgcggcgat gcgcacgttc ttccgaggag
     3661 gcgtcaagga aaattttcac tggtgcatca gggaatacca ccgttcccat gtcgcggcca
     3721 tcggcaatca gacctggtaa ttcgcgaaac gcgcgttggc gacgcaataa tgcttcacga
     3781 acgcgtggga atgccgcgac ttgtgaagcc gcattcgcca cttcctgagt acgaatttcg
     3841 ccgctgacat cttccccttc gaggatcact tccagattgc cattggttga cacaaaacgt
     3901 acatccagat gggatgccag cggtaccagc gcatcttctg acgcaacatc aacatggtga
     3961 tgtaatgccg ccaatgccag tacgcgataa attgcacccg aatccagcag atgccattgc
     4021 aatgcttccg ccatagcctt acacaaggtg cctttccctg caccgcttgg gccatcaatg
     4081 gtaataaccg gggcaattgc cgtcatcttt atctccttaa aacaggcgta ccgttaacat
     4141 aaccgcgcgc attatacgcg ccgacgccac aaatcgttaa cgttgtgtgc aaaaaccagt
     4201 tttgtctgta ttcagatggg gatttattgc gcaattatag caggctggca gaagaccagc
     4261 ccgaaagatg acaatgattt acttaccaga ggcgatacga tcacggatgt gttgcgcacg
     4321 ctctgttgat ggtgggtgag agtcaaacat ggactgggtg cgaccgccat ccagactagc
     4381 cagtttttca aagctgccaa ccagcccctg ggtgctgatg ccacgtttct tcaacagatc
     4441 aaaggagaaa tcatctgctt cggactcttt atcacgggag tatttagcat taatagcgcc
     4501 ttctgcgata tcacccaatt gtgagcggga aagctgggaa gccacaccgc tggtagctga
     4561 aatggcatcg cgtgcggcaa cgatcgcata agaagctttc atttcagcca gcgagtgacc
     4621 caacgcgacg tggcccagtt catggcccag aacaccttca atttcgttgt cattcatcat
     4681 gtccatcagg ccactgtaga cacggacaca gccgttcgcc atcgcccatg cgttgacgtc
     4741 gctggtcata taaaccttat agttgaccgg cgtgccatta atattgttac ccaatgcttt
     4801 ggcgattttt gccagacgtt taccgtactt gctggattta cttgcgactt gattgccgct
     4861 gtccatttcg gcacagccct gattggcaat cgcttttgca tcggcatcgc ttaatgttgc
     4921 tgctttatag gcatttaaac cggagctgat agccatattg gtatcaatac cgtgggtatt
     4981 ttgcaccctg tcagtaatgc tgcagaggtc gcaatcgcca gcagtaattt agtattcttc
     5041 atgtgaatca tccgttgatt aatcatatat aaacattatg tatcaacaac ttacattgac
     5101 aagcgacgct accattaatc aaaatgactc acaaggtccg aaaaaaaacg ccgacaatgt
     5161 gccgacgttt tgataaagaa agatttggct atttattgcc cgttgttcat tcaggctgcc
     5221 tggctaatcc gcgccaactg ctcgaaataa tccggaaatg ttttggccgt acatttggga
     5281 tcaagaatcg tcactggtgt atctgacaac gccaccagcg agaaacacat cgccatccgg
     5341 tgatcattgt atgtcgcgat ctcggcaaag ttcagttttt ccggtggagt gatacgaatg
     5401 taatcgtgcc cctcttctac ttccgcaccg actttacgca gttctgttgc catcgcaaac
     5461 aggcgatcgg tttctttaac acgccagtta tagatattgc gcagcgtggt ggtgcctttt
     5521 gcaaataacg ccgccgtggc aatggtcatc gccgcatcgg gaatatggtt catatccata
     5581 tcaatagcgt tcagttcacc acgcgtgcag gaaatataat catcgcccca gcaaatggtc
     5641 gcgcccattt tttccagcac atcagcaaag cgaatatcac cctgcatact gttacgtcca
     5701 ataccggtca cttttacagt gccgcctttg attgctgctg ctgccagaaa gtaagaagcc
     5761 gaagatgcat cgccttcgac caaataagta cccggagact gataagactg tccgcctttt
     5821 acgacaaatt gttgatagtg ctgattttca atttcaacac caaacgtctt catcagattg
     5881 agtgtgatgt cgatataagg tttagaaacc agatcgcctt taatacgaat caccgtatct
     5941 tccggcgcaa gaggcgcagt cattaacagt gcggtgagga attggctgga aacggagcca
     6001 tcaacgtcaa cgttgccgcc agtaaagccg ccctgtaaac gcaacggcgg ataattttct
     6061 tgttccaggt aagtgatctt cgccccgccc aggcgcagcg catccaccag atgaccaatc
     6121 gggcgttctt tcatacgcgg ctcaccggtc agcacaatat cattgctacc cagacaaaga
     6181 gctgccgcca gcggacgcat tgccgttccg gcgttaccga ggaacaactc cagggcacct
     6241 tctgcgtgta atggaccgcc gttaccgata atttcgcaac gcgtacgatc ggctgaaagc
     6301 gtatagctta cccctaacgc tgttaatgca ttcagcatat ggcgcacgtc atcgctatcc
     6361 agcagattgg ttaatactgt tttgccgtgt gctaatgccg ccagcaataa agcgcggtta
     6421 gaaacgctct tggaaccggg cagattaata gtgccatcga cacgagcgat gggttgtaac
     6481 gtcagggatt ccatgaactc aactctctac aacagaaata aaaaccccac aggctggctg
     6541 tggggattaa gcaaaatttc ggcattaacc gtgacggcgt tcgaactcaa ccatgaagtc
     6601 tgtcagcgct ttaacgcctt ccagcggcat ggcgttataa atagaagcgc gcattccgcc
     6661 gaccacacgg tgacctttca gtgcatgaag gccagcagca aaagactctt caaggaacaa
     6721 tttgtcaagc gcactgtccg ccaactggaa cggcacgttc atccgcgaac ggttagcttt
     6781 cgccacgtca ttgcggtaga aatcgctgtt atcaatcacc ccatatagca gttctgcttt
     6841 ttgctgattg attttatcca tttcagctac accgccgttc gctttcagcc atttaaagac
     6901 cagaccagat agataccagg caaatgtcgg cggcgtgtta aacatggagc cgttatcgtt
     6961 gaagatggaa taatccagta tcgacggaca cgcgatattc gctttgccca gcaaatcttc
     7021 acgaacgatg acgattgtca ggccagccgg gccgatattt ttctgcgcgc cagcgtaaat
     7081 cacgccataa cggctgacgt caatcggacg ggaaagaatg gttgaagaga agtcggcggc
     7141 gaccaccaca tctttgccga agtctggcgt ttcgtcgatg gcgataccgt cgatggtttc
     7201 attcgggcag taatgcatat aagcagcatt atcagagagt tgccattcac gcattggctt
     7261 aaccgcgcgc agaccatcaa cagtcacttt ggcgtcaaag acattaggcg tgcagtattt
     7321 tttcgcttct ttaatggcag ttgccgccca gtaaccggca tcaacataat ctgcggtggt
     7381 tttatcaccg agaatattca gcggtaccgc agcaaactga ccgcgaccac cgccatggca
     7441 gaataatacc ttgtagttgg aggggacatt aagaagatcg cgaaaatcct tctcggcttc
     7501 ctctgcaacc tgaatgaact ctttgccacg gtgactcact tccatcaccg acgtaccaag
     7561 accgttccag tcgcgcagtt cctgttgagc ctgtttaagc acctctgccg gtagcattgc
     7621 cggaccagaa ctaaaattga agatttgagc catttcccct caccacgttg cgttgctatt
     7681 aacccgcggt caatcgattg cgaccacagg taatacatta ttcctgtggc tatcggtttt
     7741 atcattcagt gacacacatc gcaatgagta aaaccgttga gggcaaaaat gtggcttgca
     7801 tcacacaaaa gaatctctcg gattattagc aaaaagccga tgtttttact gtcaggtcac
     7861 ccgttttgcc cgacttgcct tcgtccattc tggatttgca cagcgcggac ataattgttt
     7921 ttcccccgct ttcatatgaa tgatttcact acaacgaata caggcatagt ccgccgactc
     7981 cggcaccact ttgtaacgct gcgtacaatc actgggtaaa ataagtaaac ccggtttcac
     8041 cttgtcatct tcaaagaaat agacactgat ttgcccgttg gtttcgagaa tcgccagacg
     8101 tacctgcccc agctgctcca cgccacgcaa tcgtagctcc ataaagaact caaattccgt
     8161 catgttggag ttattgagtt tcgaccaggc cagctcgcca tcttcaataa taacaaccgg
     8221 cttaccttcc agtagatctt ccagtttttc actgtgcgcc atcaaccaca ttaccaggcg
     8281 gtataacaac gccagagtga taaagacgat aagtaccggc accatcggca catcatcata
     8341 aaacgccaca tctcccgccg ctgaacccag cgtgagaatg attaacactt caaacagcga
     8401 catctgtcgc acaccgcgtc ttccggtcat tttgaggaac aaaaaaacca gtacaaaggt
     8461 ataaagacta cgtagtgcaa cttcgccaag gaaatcaaaa ggcactttat caaatgccat
     8521 acggtggaga tcgaacgcct tcatttttat gctcttatcg tggtttattc gctaaaagca
     8581 tagtcaacag ttcatcggca tagcggcggt gatagcgcct ttgagataaa acccgtatta
     8641 ttgcgcgctt tccgtacgac taaagtgatt ttcatgacgc aaacatttat ccccggcaaa
     8701 gatgccgctc tggaagattc catcgctcgc ttccagcaaa aaatttcaga cctcggcttt
     8761 cagattgaag aggcctcctg gctgaatcct gtgcctaacg tctggtctgt acatattcgc
     8821 gacaaagagt gcgcactgtg ttttaccaac ggtaaaggcg caaccaaaaa agcggcgctg
     8881 gcttctgcac ttggtgaata tttcgagcgt ctctcaacca actacttttt tgctgatttc
     8941 tggctgggcg aaaccatcgc caacggtccg ttcgtgcatt atcccaacga aaaatggttc
     9001 ccactgaccg aaaatgacga tgtgccagaa ggactactcg atgaccgtct gcgcgcgttt
     9061 tatgatccgg agaatgaact gaccggcagc atgctgattg acctacaatc cggtaacgaa
     9121 gatcgtggta tttgcggcct gccgtttacg cgtcagtccg acaatcagac cgtttatatt
     9181 ccgatgaata tcattggtaa cctgtacgtc tccaacggta tgtccgcagg taatacccgc
     9241 aacgaagcac gcgttcaggg attgtctgaa gttttcgaac gctacgtgaa aaaccgcatt
     9301 attgctgaaa gcatcagcct gccagagatc ccggcagacg tgctggcgcg ttacccagcg
     9361 gtggttgaag cgatcgaaac actggaagca gaaggtttcc cgatcttcgc atatgatggt
     9421 tcccttggcg gccagtatcc ggtgatttgc gtggtactgt tcaatcctgc taacggtacc
     9481 tgctttgcct ctttcggtgc gcatcctgat tttggcgtag cactggaacg taccgtgacc
     9541 gagctgctgc aaggtcgtgg cctgaaagat ttggatgtgt ttactccgcc aaccttcgat
     9601 gatgaagaag tcgctgaaca taccaacctc gaaacgcact ttatcgattc cagcggttta
     9661 atctcctggg acctgttcaa gcaggatgcc gattatccgt ttgtggactg gaatttctcc
     9721 ggcaccacgg aagaagagtt tgctacgctg atggctatct tcaacaaaga agataaagaa
     9781 gtttatattg ccgattacga gcatctgggc gtttatgctt gccgtattat cgtgcctggc
     9841 atgtccgata tttatccggc tgaagatctg tggctcgcga ataacagtat gggcagccat
     9901 ttacgtgaaa cgattctttc gctaccaggc agcgagtggg aaaaagaaga ttacctgaac
     9961 ctcatcgagc aactggatga agaaggtttt gatgacttta cccgcgtgcg tgagctgttg
    10021 ggtctggcga ccgggtcgga taacggttgg tacaccctgc gtatcggtga attaaaagcc
    10081 atgctggcgc tggctggtgg cgatctggaa caggctctgg tctggaccga atggacgatg
    10141 gagtttaact catcagtatt tagtccggaa cgcgccaact attatcgctg cctgcaaacg
    10201 ttgttattac tggcacagga agaagatcgc cagccgctgc aatatctgaa tgcgtttgtt
    10261 cgcatgtacg gcgcagatgc cgtggaagcc gccagtgcgg caatgagcgg cgaagcggcg
    10321 ttttacggcc tgcaaccggt agatagcgat ctgcacgcgt ttgctgcaca tcagtcgttg
    10381 ttgaaggcct acgaaaagct gcagcgcgcc aaagcagcat tctgggcaaa ataaaatcaa
    10441 atagcctacg caatgtaggc ttaatgatta gtctgagtta tattacgggg cgtttttcta
    10501 atgccccgct ttacatatat ttgcattaat aaaataattg taattataag gttaaatatc
    10561 ggtaatttgt atttaataaa tacgatcgat attgttactt tattcgcctg atgctccctt
    10621 ttaattaact attttagcgg aggatgcgga aaaaattcaa ctcatttgtt aatttttaaa
    10681 atttattttt atttggataa tcaaatattt actccgtatt tgcataaaaa ccatgcgagt
    10741 tacgggccta taagccaggc gagatatgat ctatatcaat ttctcatcta taatgctttg
    10801 ttagtatctc atctccgact taataaagag agagttagtg tgaaagctga caaccctttt
    10861 gatcttttac ttcctgctgc aatggccaaa gtggccgaag aggcgggtgt ctataaagca
    10921 acgaaacatc cgcttaagac tttctatctg gcgattaccg ccggtgtttt catctcaatc
    10981 gcattcgtct tctatatcac agcaaccact ggcacaggca caatgccctt cggcatggca
    11041 aaactggttg gcggcatttg cttctctctg gggctgattc tttgtgttgt ctgcggagcc
    11101 gatctcttta cttccaccgt gttgattgtt gttgctaagg cgagtgggcg catcacctgg
    11161 ggtcagttgg cgaaaaactg gctaaatgtc tattttggca acctggtcgg cgcactgctg
    11221 tttgtacttt taatgtggct ttccggcgag tatatgaccg caaatggtca atggggacta
    11281 aacgtcctac aaaccgccga ccacaaagtg caccatactt ttattgaggc cgtctgtctt
    11341 ggtatcctgg caaacctgat ggtatgtctg gcagtatgga tgagttattc tggccgcagc
    11401 ctgatggaca aagcgttcat tatggtgctg ccggtcgcga tgtttgttgc cagcggtttt
    11461 gagcacagta tcgcaaacat gtttatgatc ccgatgggta ttgtgatccg cgacttcgca
    11521 tctccggaat tctggaccgc tgtcggttct gcaccggaaa atttttctca cctgaccgtg
    11581 atgaacttca tcactgataa cctgatcccg gttacgatcg gtaatattat cggcggtggt
    11641 ttgttggttg ggttgacata ctgggtcatt tacctgcgtg aaaacgatca ccattaatgg
    11701 ttgtcgaagt acgcagtaaa taaaaaatcc acttaagaag gtaggtgtta catgtccgag
    11761 cttaatgaaa agttagccac agcctgggaa ggttttacca aaggtgactg gcagaatgaa
    11821 gtaaacgtcc gtgacttcat tcagaaaaac tacactccgt acgagggtga cgagtccttc
    11881 ctagctggcg ctactgaagc gaccaccacc ctgtgggaca aagtaatgga aggcgttaaa
    11941 ctggaaaacc gcactcacgc gccagttgac tttgacaccg ctgttgcttc caccatcacc
    12001 tctcacgacg caggctacat caacaagcag cttgagaaaa tcgttggtct gcagactgaa
    12061 gctccgctga aacgtgctct tatcccgttc ggtggtatca aaatgatcga aggttcctgc
    12121 aaagcgtaca accgcgaact ggatccgatg atcaaaaaaa tcttcactga ataccgtaaa
    12181 actcacaacc agggcgtgtt cgacgtttac actccggaca tcctgcgttg ccgtaaatct
    12241 ggtgttctga ccggtctgcc agatgcatat ggccgtggcc gtatcatcgg tgactaccgt
    12301 cgcgttgcgc tgtacggtat cgactacctg atgaaagaca aactggcaca gttcacttct
    12361 ctgcaggctg atctggaaaa cggcgtaaac ctggaacaga ctatccgtct gcgcgaagaa
    12421 atcgctgaac agcaccgcgc tctgggtcag atgaaagaaa tggctgcgaa atacggctac
    12481 gacatctctg gtccggctac caacgctcag gaagctatcc agtggactta cttcggctac
    12541 ctggctgctg ttaagtctca gaacggtgct gcaatgtcct tcggtcgtac ctccaccttc
    12601 ctggatgtgt acatcgaacg tgacctgaaa gctggcaaga tcaccgaaca agaagcgcag
    12661 gaaatggttg accacctggt catgaaactg cgtatggttc gcttcctgcg tactccggaa
    12721 tacgatgaac tgttctctgg cgacccgatc tgggcaaccg aatctatcgg tggtatgggc
    12781 ctcgacggtc gtaccctggt taccaaaaac agcttccgtt tcctgaacac cctgtacacc
    12841 atgggtccgt ctccggaacc gaacatgacc attctgtggt ctgaaaaact gccgctgaac
    12901 ttcaagaaat tcgccgctaa agtgtccatc gacacctctt ctctgcagta tgagaacgat
    12961 gacctgatgc gtccggactt caacaacgat gactatgcta tcgcttgctg cgtaagcccg
    13021 atgatcgttg gtaaacaaat gcagttcttc ggtgcgcgtg caaacctggc gaaaaccatg
    13081 ctgtacgcaa tcaacggcgg cgttgacgaa aaactgaaaa tgcaggttgg tccgaagtct
    13141 gaaccgatca aaggcgatct cctgaactac gatgaagtga tggagcgcat ggatcacttc
    13201 atggactggc tggctaaaca gtacatcact gcactgaaca tcatccacta catgcacgac
    13261 aagtacagct acgaagcctc tctgatggcg ctgcacgacc gtgacgttat ccgcaccatg
    13321 gcatgtggta tcgctggtct gtccgttgct gctgactccc tgtctgcaat caaatatgcg
    13381 aaagttaaac cgattcgtga cgaagacggt ctggctatcg acttcgaaat cgaaggcgaa
    13441 tacccgcagt ttggtaacaa tgatccgcgt gtagatgacc tggctgttga cctggtagaa
    13501 cgtttcatga agaaaattca gaaactgcac acctaccgtg acgctatccc gactcagtct
    13561 gttctgacca tcacttctaa cgttgtgtat ggtaagaaaa ctggtaacac cccagacggt
    13621 cgtcgtgctg gcgcgccgtt cggaccgggt gctaacccga tgcacggtcg tgaccagaaa
    13681 ggtgctgtag cgtctctgac ttccgttgct aaactgccgt ttgcttacgc taaagatggt
    13741 atctcctaca ccttctctat cgttccgaac gcactgggta aagacgacga agttcgtaag
    13801 accaacctgg ctggtctgat ggatggttac ttccaccacg aagcatccat cgaaggtggt
    13861 cagcacctga acgttaacgt gatgaaccgt gaaatgctgc tcgacgcgat ggaaaacccg
    13921 gaaaaatatc cgcagctgac catccgtgta tctggctacg cagtacgttt caactcgctg
    13981 actaaagaac agcagcagga cgttattact cgtaccttca ctcaatctat gtaattagat
    14041 ttgactgaaa tcgtacagta aaaagcgtac aataaaggct ccacgaaagt ggggcctttt
    14101 ttagcacgag agcctttttt gtcagctatc tatactttaa ggtgactgcc aaaacagact
    14161 cgacgtagcc ttcgagctgc gcaccaacac ggcctcagat gggccacatc tggagaaaca
    14221 ccgcaatgtc agttattggt cgcattcact cctttgaatc ctgtggaacc gtagacggcc
    14281 cgggtattcg ctttatcacc tttttccagg gctgcctgat gcgctgcctg tattgtcata
    14341 accgcgacac ctgggacacg catggcggta aagaagttac cgttgaagat ttgatgaagg
    14401 aagtggtgac ctatcgccac tttatgaacg cttccggcgg cggcgttacc gcatccggcg
    14461 gtgaagcaat cctgcaagct gagtttgttc gtgactggtt ccgcgcctgc aaaaaagaag
    14521 gcattcatac ctgtctggac accaacggtt ttgttcgtcg ttacgatccg gtgattgatg
    14581 aactgctgga agtaaccgac ctggtaatgc tcgatctcaa acagatgaac gacgagatcc
    14641 accaaaatct ggttggagtt tccaaccacc gcacgctgga gttcgccaaa tatctggcga
    14701 acaaaaatgt gaaggtgtgg atccgctacg ttgttgtccc aggctggtct gacgatgacg
    14761 attcagcgca tcgcctcggt gaatttaccc gtgatatggg caacgttgag aaaatcgaac
    14821 tcctccccta ccacgagctg ggcaaacaca aatgggtggc aatgggtgaa gagtacaaac
    14881 tcgacggtgt taaaccacct aagaaagaga ccatggaacg cgtgaaaggc attcttgagc
    14941 agtacggtca taaggtaatg ttctaatttc cccgtaaagc ggcaacttta ttgagttgcc
    15001 gcttttttat tccgcgcttc attctgctac agtgttttta acacatttta tagtgcatct
    15061 accatatccc gtacctgaga taataacgac tgataatagc tcgcatgaag ttcttcccca
    15121 tcgaatacca ctgtattaca caagaaagtg acatcggcat cttcaatacc aagataactg
    15181 cacatatttt tcaaataatc gcttatattt ttttcccagc ccatctggac aaa
//
LOCUS       DAJVUN010000091        15179 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.091, whole genome shotgun sequence.
ACCESSION   DAJVUN010000091 DAJVUN010000000
VERSION     DAJVUN010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15179
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.091"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..198)
                     /locus_tag="OQQ76_002418"
     CDS             complement(<1..198)
                     /locus_tag="OQQ76_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707676.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HCS1968888.1"
                     /translation="MMKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVA
                     LKTDAETEKLVTDINAERKASY"
     gene            complement(203..388)
                     /locus_tag="OQQ76_002419"
     CDS             complement(203..388)
                     /locus_tag="OQQ76_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HCS1968889.1"
                     /translation="MKILLAALTSSFMLAACTPRIEVAAPKEPITINMNVKIEHEIII
                     KADKDVEELLETRSDLY"
     gene            complement(385..3024)
                     /locus_tag="OQQ76_002420"
     CDS             complement(385..3024)
                     /locus_tag="OQQ76_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH family protein"
                     /protein_id="HCS1968890.1"
                     /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRI
                     ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVEFDSACLAKL
                     PQTEESPAAPKTLAQWQSMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE
                     KVKFQGQLKGQQLTVSELDVIAFEYQPPVKLVGEFTMPLVPDGLPVSGHATATLNLPQ
                     EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLS
                     GRLGVKVDNWQAGLENALISGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG
                     EAKQADLILYARLPAQLSGSLTDPTLAFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV
                     TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW
                     DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPVVWVRDAQHPSFSGAL
                     SLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR
                     GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW
                     MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE
                     EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF
                     SGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS
                     RSSTNINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA
                     WLEQNARLPGNDCPQGKECEEKQ"
     gene            3232..4221
                     /gene="ldhA"
                     /locus_tag="OQQ76_002421"
     CDS             3232..4221
                     /gene="ldhA"
                     /locus_tag="OQQ76_002421"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HCS1968891.1"
                     /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG
                     CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP
                     EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML
                     RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEA
                     AFDQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI
                     QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV"
     gene            4332..4754
                     /gene="hslJ"
                     /locus_tag="OQQ76_002422"
     CDS             4332..4754
                     /gene="hslJ"
                     /locus_tag="OQQ76_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HslJ"
                     /protein_id="HCS1968892.1"
                     /translation="MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKP
                     VTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELD
                     NTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN"
     gene            complement(4751..5017)
                     /locus_tag="OQQ76_002423"
     CDS             complement(4751..5017)
                     /locus_tag="OQQ76_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015964583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HCS1968893.1"
                     /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEA
                     NCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY"
     gene            5291..8815
                     /gene="nifJ"
                     /locus_tag="OQQ76_002424"
     CDS             5291..8815
                     /gene="nifJ"
                     /locus_tag="OQQ76_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HCS1968894.1"
                     /translation="MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL
                     KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP
                     FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSR
                     VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANP
                     DTYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAI
                     GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQTLPGSVRSVAVLDRTKEPGAQAE
                     PLYLDVMTALAEAFNNGKRETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF
                     TVGIYDDVTNLSLPLPENTQPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ
                     GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGG
                     TFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF
                     FHLTQILPGDSALAELQGAIAKSYSSKGQDLVEGNWQALALARESVEEVPLQPVNPHS
                     ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP
                     IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV
                     APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKL
                     ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP
                     STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT
                     ALKSDATPEVRREQIAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG
                     GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM
                     MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL
                     TATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQPEVAEQL
                     WKDAAADLQKRYDFLAQMAGKAEKSNTD"
     gene            9181..10314
                     /gene="ompN"
                     /locus_tag="OQQ76_002425"
     CDS             9181..10314
                     /gene="ompN"
                     /locus_tag="OQQ76_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpN"
                     /protein_id="HCS1968895.1"
                     /translation="MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGL
                     KFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
                     GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAY
                     TSSDRTNDQVNHTAAGCDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVAN
                     KTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATY
                     YFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF"
     gene            10455..10889
                     /gene="uspF"
                     /locus_tag="OQQ76_002426"
     CDS             10455..10889
                     /gene="uspF"
                     /locus_tag="OQQ76_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310024.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspF"
                     /protein_id="HCS1968896.1"
                     /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL
                     PYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILEL
                     AKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR"
     gene            11446..12360
                     /gene="sitA"
                     /locus_tag="OQQ76_002427"
     CDS             11446..12360
                     /gene="sitA"
                     /locus_tag="OQQ76_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000949004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter substrate-binding
                     protein SitA"
                     /protein_id="HCS1968897.1"
                     /translation="MHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAK
                     NVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNG
                     VPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQ
                     RNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINAD
                     QQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTEN
                     GPVPTYIDLLKVTTSTLVQGIKAGKREK"
     gene            12360..13187
                     /gene="sitB"
                     /locus_tag="OQQ76_002428"
     CDS             12360..13187
                     /gene="sitB"
                     /locus_tag="OQQ76_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter ATP-binding
                     protein SitB"
                     /protein_id="HCS1968898.1"
                     /translation="MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGS
                     GKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEIDWSFPVLVEDVVM
                     MGRYGYMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
                     GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGT
                     VLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR"
     gene            13184..14041
                     /gene="sitC"
                     /locus_tag="OQQ76_002429"
     CDS             13184..14041
                     /gene="sitC"
                     /locus_tag="OQQ76_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitC"
                     /protein_id="HCS1968899.1"
                     /translation="MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD
                     ALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFF
                     GLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
                     DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP
                     RLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRR
                     AHKALEDRS"
     gene            14038..14895
                     /gene="sitD"
                     /locus_tag="OQQ76_002430"
     CDS             14038..14895
                     /gene="sitD"
                     /locus_tag="OQQ76_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitD"
                     /protein_id="HCS1968900.1"
                     /translation="MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMG
                     DAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGM
                     FAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
                     FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRF
                     HIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNA
                     HTQDLLSPN"
BASE COUNT         3830 a         3814 c         3672 g         3863 t
ORIGIN      
        1 gtaactcgct ttacgttcgg cattaatgtc ggttactaat ttctctgttt cagcatccgt
       61 tttcagcgca accagataac cataaaatgt ttccccgacc cgcccctgcg ttctggcttc
      121 atccagagtc aatgccatta cattgctgct taccagccca acaagaaacg cacaaagaag
      181 taatgttttc ttcatcatcg cctcagtaaa gatcgctacg agtttcaagc agctcttcga
      241 catctttgtc tgccttgatg atgatctcat gctcaatttt aacgttcata ttgatagtga
      301 tcggttcctt gggcgcagcg acttcaatac gcggcgtaca ggcagccagc ataaaagatg
      361 acgtcaacgc agccagtaaa attttcattg tttttcctca cactcttttc cttgcggaca
      421 gtcatttccc ggcagacgtg cgttctgctc caaccatgcc tggagattat cgccaaagcg
      481 taaactgcgc cacagcgtaa aaatattctc ttcatgatgg taattaaggt ttaccgtacc
      541 gcttttacca tcaacgcgac tggtacctgt aatgttggcc tgcatggtta ataaaccgag
      601 attatctaaa ttaatatttg tcgatgaacg gctaatttcc atatagcgca accagttaat
      661 tgctgaaccc gcagtcatat tgtctttcac caccgcatct gcggtgtctt tatccagccg
      721 caaggtcatt ggcccgctat ttgccagcca accatctttc actatccatt tttcgttgtt
      781 tagccataac ggcaatgcac cactaaatgc cccggacatg gcgaattgtt tcggattgac
      841 ggcgctaacc agttcgctgg atgagagatt attcagccgc aacagcgccg ggtcatgttg
      901 cggcatacgt aattgtttca tcagtacgtt accgcctaac acatcgacgc taacatcagt
      961 caacagcaag ggttcttctt cagtccacgg ataacgccct tgcaaatcag ccgtaatatt
     1021 tttcgctgtc accagattaa tcacttcggc aattcgcaac gtaacggggc cgcgagtccc
     1081 cagatgccag gctccatcgg caaaacggaa aggcaggaca aaatcgacac cgttaacctg
     1141 attatctggc atccaggcac taccgccttt caacacgccg tgccctcccg cgcggaatcc
     1201 ttgttcaggc gcagcagaaa atgcaacctg agcatacagt tcaccatcgc gtaagttcat
     1261 cttccagtcg ggtggcacca gcggctggaa tacagtcagt gattgttttg gccaccaggc
     1321 gttaccgcgc agacgaatac cgtcccagcg accatttacc cgaaccgggc caatctcacc
     1381 agcatgtaaa tcgcctttaa agaggaaata cgtcggatcg cgcccatcga cgctaaattt
     1441 taaggttgat ggcggtaaca cactgccgcc agtgaacagc gtttgcccgg cgtccagtga
     1501 cagcgcgccg ctgaaggagg gatgctgtgc gtcacgtacc cagacgacgg gcttgtccag
     1561 aattaatcgc ggcttttcta ccgtcatcgt accgtattgt aactggtcga aaccggtgga
     1621 gaggtcggtc agcgtaatcg tgctgtcatg ccattcacct tttcctgcga catcccaggt
     1681 ggcattcatc ggtgtaaaac tgccttttcc ccagtagcgc cactgccagc ggcccgcgtc
     1741 agggagaaaa tcattcgcca gcccatccat atgcagcacg aaatcgccca gttcattttc
     1801 atgcgcctgc aaaatggcct gcaaacgtcc gtcaacacca cgttgggtga cttttacacc
     1861 cgctaaaggc cagcggattt catcgatgtc cagcgaatcg atgactcttc cctttgaacg
     1921 aagtaacgcg cctggctcaa aggccagcgt tgggtcagtc agacttccac ttagctgcgc
     1981 gggtaagcgg gcatataaaa tgaggtccgc ctgtttcgct tcaccggtca gctgcagagg
     2041 cagctggctg ttatccatgc ttaattttcc tgggccaaaa tttagcaccg cgttaccttt
     2101 acccgcttgc ccctgggtca gcacactcag tcgtccgctg atcagagcgt tctcaagccc
     2161 tgcctgccag ttgtcgactt tgacacccag tcggccactc aaaggaaaac ctgcatacgg
     2221 ccaactccag cgaccatcgc ttacggtcaa ttgttgacga gtaatttgcc acggcaaatc
     2281 gagcaacgga tcgccgttat cacgtgccag cacaatcaat tgcccgctat tttcctgcca
     2341 gtccagctct gcatccacca gtgacggttc ctgcggcaag tttaacgtcg cagtagcatg
     2401 cccacttaca ggaagtccat ccggcacgag cggcatagta aattccccca ccagtttaac
     2461 cggcggctga tattcaaacg cgatgacatc cagttcgctg actgtaagtt gttgcccttt
     2521 cagctggcct tgaaatttaa ctttttcgcc ctgataacgc agttgctgga tatcagaggt
     2581 taatgcgaga gagagttttc cctgccattc ctgccaggga gaaaaaatca gtttatcgat
     2641 attgatccag gtgttaggca gcatggactg ccactgcgcg agagtttttg gagcagctgg
     2701 cgattcctcc gtctgcggca atttcgccag acaagcagaa tcaaattcta ccgtgccgac
     2761 gttcaataac cagcggctgg gatgtgaaag gctggcgttg gtgatatgcg caagctgaca
     2821 atctcccacc agataacgga gatcgggaat gattaaacct ttacgcgtaa tgcgtgggct
     2881 ttcatctaat gcaatacgtg tcccgagcgg tagccagatg cccgccagcg tgggaaccca
     2941 cagcccgagc gtcatcagca gcgtcaacgg cacaagaata atcagtaata acagcgcgag
     3001 aacggcttta tatttaccca gcatgggtag ttaatatcct gatttagcga aaaattaagc
     3061 attcaatacg ggtattgtgg catgtttaac cgttcagttg aaggttgcgc ctacactaag
     3121 catagttgtt gatgaatttt tcaatatcgc catggttttc aattatattt gaaattttgt
     3181 aaaatatttt tagtggctta aatgtgattc aacatcactg gagaaagtct tatgaaactc
     3241 gccgtttata gcacaaaaca gtacgacaag aagtacctgc aacaggtgaa cgagtccttt
     3301 ggctttgagc tggaattttt tgactttctg ctgacggaaa aaaccgctaa aactgccaat
     3361 ggctgcgaag cggtatgtat tttcgtaaac gatgacggca gccgcccggt gctggaagag
     3421 ctgaaaaagc acggcgttaa atatatcgcc ctgcgctgtg ccggtttcaa taacgtcgac
     3481 cttgatgcgg caaaagaact ggggctgaaa gtagtccgtg ttccagccta tgatccagag
     3541 gccgttgctg aacacgccat cggtatgatg atgacgctga accgccgtat tcaccgcgcg
     3601 tatcagcgta cccgtgacgc taacttctct ctggaaggtc tgaccggctt tactatgtat
     3661 ggcaaaacgg caggcgttat cggtaccggt aaaatcggtg tggcgatgct gcgcattctg
     3721 aaaggttttg gtatgcgtct gctggcgttc gatccgtatc caagtgcagc ggcgctggaa
     3781 ctcggtgtgg agtatgtcga tctgccaacc ctgttctctg aatcagacgt tatctctctg
     3841 cactgcccgc tgacaccgga aaactaccat ctgttgaacg aagccgcctt cgatcagatg
     3901 aaaaatggcg tgatgatcgt caataccagt cgcggtgcat tgattgattc tcaggcagca
     3961 attgaagcgc tgaaaaatca gaaaattggt tcgttgggta tggacgtgta tgagaacgaa
     4021 cgcgatctgt tctttgaaga taaatccaac gacgtgatcc aggatgacgt attccgtcgc
     4081 ctgtctgcct gccacaacgt gctgtttacc gggcaccagg cattcctgac agcagaagct
     4141 ctgaccagta tttctcagac tacgctgcaa aacttaagca atctggaaaa aggcgaaacc
     4201 tgcccgaacg aactggttta atgttgcagc tcccctgcaa tccaggggag ctgattcaga
     4261 taatccccaa tgacctttca ttctctattc ttaaaatagt cctgagtcag aaactgtaat
     4321 tgagaaccac aatgaagaaa gtagccgcgt ttgttgcgct aagcctgctg atggcgggat
     4381 gtgtaagtaa tgacaaaatt gctgttacgc cagaacagct acagcatcat cgctttgtgc
     4441 tggaaagcgt aaacggtaag cccgtgacca gcgataaaaa tccgccagaa atcagctttg
     4501 gtgaaaaaat gatgatttcc ggcagcatgt gtaaccgctt tagcggtgaa ggcaaactgt
     4561 ctaatggtga actgacagcc aaagggctgg caatgacccg tatgatgtgc gctaacccgc
     4621 agcttaatga actcgataac accattagcg aaatgctgaa agaaggtgca caagtggatc
     4681 tgaccgcgaa ccagttaacg ctggcgaccg cgaaacagac attaacttat aagctggcgg
     4741 atttaatgaa ttaatagctg ccacagctcc cggcggcaag tgactgttcg ctacagcgtt
     4801 tgccgttggg taatgcacac atcccaatcg ccgtgccatc cagttgacgg gcaacagaaa
     4861 gcgaaccgcc gatcattgca caatttgctt ctccactact ggacatcgac gcttttaaac
     4921 ctggcgctac gtgcgccgca gtcgcctgct gaacaggttc actactacac gccgacaaca
     4981 ataaagcggc acaccctacc caaaacgctg ctcgcatctt ttcttcctct gatcttcaag
     5041 ccaaacgaca ccgccataaa taataggcag cacagagggc gacatcgaga gctgtcctgc
     5101 gcgttgcccc gcatttttac ttttttatgg ctattttttt gccctctgtt tgatcaaaac
     5161 attcattacg ctgatgtggg ggacacaaaa gcgaaaatgc agaagaaagc catttgctaa
     5221 aattgaaaga ttactactgg gcgcgcagca atttcgtgcg cccctcattt gcgcaatgta
     5281 agggtgtcat atgattacta ttgacggtaa tggcgcggtt gcttcggtgg cgtttcgcac
     5341 cagtgaagtt atcgccatct accctattac ccccagttcc acgatggcag aacaggctga
     5401 tgcctgggcc ggaaacggct tgaagaacgt ttggggagac acaccacgcg tggttgaaat
     5461 gcagtcggaa gcgggtgcta tcgctaccgt gcatggcgct ttgcagacgg gtgccctttc
     5521 aacatcgttt acgtcatcgc agggtttgct gctgatgatc ccgacactgt acaaactggc
     5581 aggcgaactc acaccgtttg tcctgcatgt agcggcacgt accgttgcca cacatgcact
     5641 ctctattttt ggcgatcatt ccgacgtcat ggcggtgcgc cagacgggtt gcgcgatgtt
     5701 gtgtgcggca aacgtccagg aagcgcaaga ctttgctctc atttcgcaca tcgcgacgct
     5761 gaaaagccgc gtgccattta ttcatttctt tgatggtttc cgcacgtccc acgaaatcaa
     5821 taaaattgtc ccgctggccg atgacacgat tcttgatctc atgccgcagg ccgaaattga
     5881 tgctcatcgc gcccgggcgc tcaacccgga acatccggtg atccgtggta cgtccgccaa
     5941 tcctgacact tatttccagt ctcgcgaagc caccaacccc tggtacaacg cagtctatga
     6001 ccatgttgaa caggcgatga atgatttctc tgccgcgaca ggtcgtcagt atcagccgtt
     6061 tgaatattac gggcatccgc aagctgaacg ggtgattatc ctgatgggct cagccattgg
     6121 cacctgtgaa gaagtggttg atgaattgct aacccgtggc gaaaaagtcg gcgtgctgaa
     6181 agttcgcctg taccgcccct tctcagccaa acacttgcta caaactctac cgggatccgt
     6241 acgcagcgtg gcggtactgg acagaaccaa agaacccggt gcccaggcag aaccgctcta
     6301 tctggatgtg atgaccgcac tggcagaagc ctttaataat ggcaagcgcg aaactctgcc
     6361 ccgtgtcatt ggtgggcgct atggtctttc atccaaagaa tttggcccgg actgtgtact
     6421 ggcggtattt gccgagctca acgcggctaa accgaaagcg cgctttacgg ttggtattta
     6481 cgatgatgta accaatctgt ccctgccgtt gccggaaaac acccagccaa actcggcgaa
     6541 acttgaagcc ttgttttatg gccttggtag tgatggcagc gtttccgcga ccaaaaacaa
     6601 tatcaagatt atcggtaatt ccacgccgtg gtacgcacag ggctattttg tttacgactc
     6661 caaaaaagcg ggcggcctga cggtttctca ccttcgcgtg agcgaacagc cgattcgttc
     6721 cgcttatctc atttcccagg ctgattttgt tggctgccac cagttgcagt ttatcgataa
     6781 atatcagatg gctgagcgtt taaaacctgg cggcactttc ctgctcaaca cgccgtacag
     6841 cgcagatgaa gtgtggtcgc gcttgccgca agaagttcag gccgtgttaa accagaaaaa
     6901 agcgcgcttc tatgtgatta acgcggcgaa aatcgcccgc gaatgtggcc tggcggcccg
     6961 tattaatacc gtcatgcaga tggctttttt ccatctgacg caaattctgc ctggcgatag
     7021 cgccctcgca gaattgcagg gtgcgattgc caaaagttac agtagcaaag gccaggatct
     7081 ggtggaaggc aactggcagg ctctggcgct ggcgcgtgaa tccgtagaag aagttccgtt
     7141 gcaaccggta aatccgcaca gcgccaatcg accgccagtg gtttccgatg ccgcccctga
     7201 tttcgtgaaa accgtaaccg cagcgatgct cgcagggctt ggtgatgccc tccccgtttc
     7261 ggcgctgccg ccagacggca cctggccgat ggggaccact cgctgggaaa aacgcaatat
     7321 cgccgaagag atccccatct ggaaagagga actctgtacc caatgtaacc actgcgtcgc
     7381 cgcttgccca cactcagcta ttcgcgcaaa agtggtacca cccgaagcga tggaaaacgc
     7441 ccctgccagc ctgcattcgc tggatgtgaa atcgcgtgat atgcgcgggc agaaatatgt
     7501 cttgcaggtg gctccggaag attgcaccgg ttgtaacctg tgcgtcgaag tttgcccggc
     7561 gaaagaccgt cagaatccag agattaaagc catcaatatg atgtcgcgcc tggaacatgt
     7621 cgaagaagag aaaatcaatt acgatttctt cctcaacctg ccagaaatcg accgtagcaa
     7681 actggaacgt attgatattc gtacatcgca gctgattaca ccgctgtttg aatattccgg
     7741 tgcttgctcc ggttgtggcg agacgccgta tattaaattg ctgactcagc tctatggcga
     7801 ccggatgttg atcgctaacg ccaccggctg ttcttcaatt tatggcggta acctgccctc
     7861 tacaccgtat accaccgatg ccaacggtcg tgggccggca tgggcgaact ctctatttga
     7921 agataatgcc gaatttggcc ttggtttccg cctgacggtc gatcaacacc gtgtccgcgt
     7981 gctgcgtctg ctggatcaat ttgccgataa aatcccggcg gaattactga cggcgttgaa
     8041 atcagacgct acgccagagg ttcgtcgaga acagatcgca gctttacgcc agcaactcaa
     8101 cgatgttgcc gaagcacatg aactgctacg tgatgcagat gcactggtgg aaaaatcaat
     8161 ctggctgatt ggtggtgatg gctgggctta cgatatcggc tttggcggtc tggatcatgt
     8221 attgagtttg acggaaaacg tcaacattct ggtgctggat acgcaatgct attccaacac
     8281 cggtggtcag gcgtcgaaag cgacaccgct gggtgcagta actaaatttg gcgagcacgg
     8341 caaacgtaaa gcgcgtaaag atcttggcgt cagtatgatg atgtacggtc atgtttatgt
     8401 ggcgcagatt tctctcggcg cgcagctgaa ccagacggtg aaagcgattc aggaagcgga
     8461 agcgtatccg ggaccatcgc tgatcattgc ttatagcccg tgtgaagagc atggttacga
     8521 tctggcactc agccatgacc agatgcgcca actcacagct accggcttct ggccgctata
     8581 tcgcttcgat cctcgtcgtg ccgatgaagg caaactgccg ctggcgctgg attcacgccc
     8641 gccgtcagaa gcactggaag aaacgttact tcacgagcaa cgtttccgtc gtctgaattc
     8701 gcagcagcca gaagtggcag aacagttatg gaaagatgct gcagctgatt tgcaaaaacg
     8761 ctatgacttc ctggcacaaa tggccggaaa agcggaaaaa agcaacaccg attaaatgct
     8821 ctggataagg attatccaat tctaaaaaaa agcccggacg actgttcggg cttgtctttt
     8881 tatatgttgg aaaatcagtg gcaatgcaat ggcccaacag aaaataaaat ctgtgacaat
     8941 aaaggcatat aacccgcgca gaataacgta tagaaaatta aaagtataat ttttattttg
     9001 tatgtattat cttcgataca ttcaccagac ttattatcat ttcagaagaa ttatttgatt
     9061 aaggttttac ttaaggcgta acaaatgata tttatcggct aactgaactt ctcctttagg
     9121 atgttttcac tccccggaat ggggataaaa ggcaaataaa ataactaaag gatttattca
     9181 atgaaaagca aagtactggc acttttaatt cctgccctgc tcgccgcagg tgctgcacat
     9241 gcagccgaag tttataataa agacggcaac aaattagatc tgtatggcaa agttgatggc
     9301 ctgcattatt tttctgataa ttcagcgaaa gatggcgatc agagctatgc gcgtctgggt
     9361 tttaaaggcg aaacccaaat taacgatcaa ctcactggct acggtcaatg ggaatacaat
     9421 attcaggcaa acaacactga atcttcaaaa aaccagtcat ggacccgtct ggcatttgcc
     9481 gggctgaaat ttgcagatta cggttctttc gattacggac gtaattatgg cgtaatgtac
     9541 gacatcgaag gctggacaga tatgctgcct gaatttggcg gtgactctta taccaatgca
     9601 gacaacttta tgactggtcg agccaatggc gtcgcgactt atcgtaatac tgatttcttc
     9661 ggtctggtaa atggtctgaa cttcgcggtg cagtatcaag gtaacaacga aggagccagt
     9721 aatggtcagg aaggcaccaa caacggacgt gatgttcgcc atgaaaacgg tgacggctgg
     9781 ggtttttcca caacatatga tttaggcatg ggctttagcg ctggtgcggc atacacctct
     9841 tctgaccgca ccaatgacca ggttaaccat actgcggcgg gttgtgataa agcagacgcg
     9901 tggactgctg ggctaaaata cgatgctaac aatatttacc tggcaaccat gtattcagaa
     9961 acgcgtaata tgaccccgtt tggcgacagc gattatgctg tggcaaacaa aacccagaat
    10021 tttgaagtca ctgcccagta ccagtttgat tttggtctgc gtccggcagt ctctttcctg
    10081 atgtctaaag gccgtgacct gcacgctgcc ggtggtgcag acaacccggc aggtgttgat
    10141 gataaagatc tggttaaata cgccgatgtt ggcgcgactt actatttcaa taaaaacatg
    10201 tccacctacg ttgactataa aatcaacctg ttggatgaag atgacagctt ctacgctgcc
    10261 aatggcatct ctaccgatga tattgtcgct ttaggtctgg tttatcagtt ctaaatcctc
    10321 ctgcccgctg ttatggcggg ctttttctgc ttattcttcc tcctttgatc taaattaaaa
    10381 atgtgaactc catcattaca caaaaagtgt catctggcgt tacactttat gcggatacta
    10441 aaacaggagg ttttatgaac agaacgattc ttgtccctat cgatatttcc gattcagaat
    10501 taactcaacg cgtgattagc cacgttgagg cagaggcaaa gattgacgat gcagaggttc
    10561 atttcctgac ggtaatacct tcactgccct actatgcctc tctgggttta gcgtattccg
    10621 cagaattacc ggcaatggat gacctgaaag cggaagccaa atcgcaactg gaagagatca
    10681 ttaaaaaatt taaactgcca accgacagag tgcatgtcca tgttgaggaa ggctcgccca
    10741 aagaccgcat tctggaattg gcgaagaaga tccccgctca tatgatcatc attgcttccc
    10801 atcgaccgga tatcaccact tatctgctcg gttccaacgc cgcagctgta gtgcgtcacg
    10861 cagagtgctc cgtgctggtt gtgcgctgac actaacgccc gcacattgct gcgggctttt
    10921 tgattcattt cgcaaatgtg ctgacatttt cccctctaat ccgtaccata cacgccactg
    10981 tttttatatc agatttctta tgctgggcat tccggcatga cgcatactct tctgatgcca
    11041 tataacgaat tgagtcgctt ttaaatgtcg caaaatcaag aaattagtaa gaaagaacaa
    11101 tacaacctga acaagtaagg gcaaaaatca caactatctg actcataagt attttattta
    11161 tttttcaata tgttaaacat tatcagcgac aacaataagc tacgataacc cactcttttt
    11221 ttgccccatt tttgccatca acaattttcc tcataaagtc atttcaaagc ctaatagctg
    11281 ctctactttt ttcctcaata tcatgtcgcc agcaggaaac aacctaatcc ctgttttagg
    11341 cctcaaagct gttaatgata attattttca ttttgtatag gttatgctat aaaacatagc
    11401 tgttgctatg tttgttctaa ttttgctcac tataggtact aaattatgca ctcaataaaa
    11461 aaagtaacca tgctcttggg gtgcctcgcc ctcacctgct cgatcgcatt tcaggcaagt
    11521 gcaactgaaa aattcaaggt cattacaaca tttaccatca tcgcggatat ggccaaaaac
    11581 gtggctggag atgctgcaga agtctcatcc ataaccaagc ctggtgcaga aattcatgag
    11641 tatcagccta cccctggcga tattaaacgt gcacaggggg cacaactgat tctcgccaat
    11701 ggtatgaatc tggaattgtg gttccaacgc ttttaccagc atctcaatgg ggttccagaa
    11761 gtaattgtct cttcgggtgt gacgccagta gggatcaccg aaggacccta tgagggcaaa
    11821 cctaatcccc atgcatggat gtcgccagat aatgctctga tttacgtcga taatattcgt
    11881 gatgcgttga taaaatacga tccggcaaat gcacaaacct accaacgtaa tgccgatact
    11941 tataaagcca agattaccca aacccttgcc cccctgcgta agcagattac ggaactccct
    12001 gagaatcagc gatggatggt caccagtgaa ggggcttttt cttatctcgc acgcgatttg
    12061 gggctaaaag agctttatct gtggccgatt aatgccgatc aacaaggaac accgcagcag
    12121 gtacgtaagg ttgttgatat agttaagaaa aatcatatcc cggcagtctt tagcgagagt
    12181 acgatttccg ataaaccagc gcgtcaggtt gcgcgtgaaa ccggcgcaca ctacggcggt
    12241 gtgctctatg tcgattccct gagcacagaa aacggcccgg tacctacgta tatcgacctt
    12301 cttaaggtta ctaccagtac gctggtacag ggaattaaag ccgggaaaag ggagaaataa
    12361 tgatgcaatc tgcaggcatt gtcgttaatg atgttactgt cacctggcgt aacgggcaca
    12421 cagcactgcg cgatgcatcc ttcacagtac caagtggatc tattgccgct ctggttgggg
    12481 taaacggttc cggaaaatcg acgttgttta aagcgattat gggatttgtg cgtctgacca
    12541 gcggaaagat atctgttctg ggtattccca cgcgacaggc gctacagaaa aacctggttg
    12601 cctacgtccc tcagtcagaa gagattgact ggtcatttcc tgtactggtg gaagatgtgg
    12661 tgatgatggg ccgctatggg tatatgggta tgttgcgtat agccaaaaag agggatcgtc
    12721 agattgtcac cgatgcgctg gaacgtgtcg atatggtgga ttttcgccat cgtcaaatcg
    12781 gcgagctttc cggtggacaa aagaaacgcg tctttctggc gagagcgatt gcacagcagg
    12841 gtgatgtgat cctgctggat gaacctttta ccggcgttga tgtgaaaacc gaagcgaaaa
    12901 tcatcagcct gttgagggag ttacgcgcgg aaggcaaaac gatgcttgtc tcaacgcaca
    12961 atctcggctc agtcacgaca ttttgcgatt atacggtcat ggtcaaaggc accgtcctgg
    13021 caagcgggcc gacagacacc acttttacag ccgagaacct ggagctggct tttagcggcg
    13081 tactgcgcca tgtcacactt aacggctcgg aagaaagcat tattactgac gatgaacgcc
    13141 cttttgtggc acatcgaccg tcagcggtgc agagggaagc aagatgaacg tgctactgga
    13201 acccttcagc tatgaatata tgctcaatgc gatgtgggtc tcggcaatgg tcggcggtct
    13261 ctgcgctttc ctgtcatgct atctgatgct aaaaggctgg tcgctgattg gcgatgcgct
    13321 gtcgcactct attgtcccgg gtgttgcggg ggcatatatg ctggggcttc cgttttctct
    13381 gggagccttc ttttccggcg gactggcagc gggcagcatg ctgtttctta accaacgcac
    13441 ccgcttaaaa gaagatgcca tcatcggcct gatcttctcg tccttttttg gcctggggct
    13501 gtttatggtg tcattgaacc cgacatccgt gaacattcag accatcgtcc tgggcaatat
    13561 tctggcaatc gatccggcgg atatcctgca actcactatc attggcattc tctcgatcat
    13621 cgtgcttttt ttcaaatgga aagatcttat ggtgaccttt ttcgacgaga atcacgcccg
    13681 tgctattgga ttacatccgg gcagattaaa aatcctcttc ttcaccctgc tgtcggtttc
    13741 gaccgttgcg gcgctgcaaa cggttggtgc ctttctggtg atctgtctgg tggtgactcc
    13801 cggtgcaaca gcatggttgt taaccgatcg ttttccccgc ctgctcataa ttgctgtaac
    13861 tattggcagt gtaaccagtt tcctcggcgc gtgggtcagt tactttctgg acggcgcgac
    13921 aggtggaatc atcgtggtgg cgcagacact gctgtttctt ttagcatttg tatttgcgcc
    13981 cacccatgga cttttggcaa atcgtcggcg tgcgcataaa gcgctggagg atcgctcatg
    14041 atggcattat tactggagcc actgcagttc acctttatga gtcacgcact gctgatttca
    14101 ctggtagttt ccataccctg tgcgctgctg tcggtctttc tggtcctgaa aggttgggca
    14161 ctgatgggtg acgcgatgag tcatgcggtt tttcctggca tcgtgcttac ctggattctg
    14221 gggttacctc tggctacagg ggcattcgtc gccggagtat tctgcgcggt ggcgacggga
    14281 tacctgaaag acaacagccg aatcaagcaa gatacagtta tggggattgt tttttctggc
    14341 atgtttgccg caggtctgat cttgtatatt gcaatcaaac cagacgtaca tcttgaccat
    14401 attcttttcg gcgacatgct cgggataacc atcggcgata taatccagac ggtgattatt
    14461 gccgggctgg ttacacttgt tattagcgta aaatggcggg attttttgct gttcagcttt
    14521 gattatcaac aggcgcaggt aagcggtttg catacgagat ggctgcatta tgggctgctg
    14581 tgcatggttt ccctgaccat tgtggcgacg ctgaaagcag taggtatcat tctctctatt
    14641 tctctgctca ttgcgcctgg cgccattgca gtactcctga cacaacgctt tcatattgcg
    14701 ctcctactgg cgactggcat atcggtaata gtgtcaatga ctggtgtctg gctgtccttt
    14761 tttatcgaca gcgcaccagc tccgacgatt gtcgtcttat tcgcggtcgt gttcatcatg
    14821 acgtttaccg ttaccagcat caacgcacgc acaaagggaa acgcccatac acaggatctg
    14881 ttatcaccca attagcacaa tatccgagga cagcatcgtc cgccagccta cagaagtccg
    14941 gaaagccatg gaaggtcgtt gggaggaggt acgaattcta tcatgcaaaa aatacgtaaa
    15001 atcgataacg cctagaaatc attcaatact cgcactatcg aaagtttacc agccaaccgc
    15061 ggcacgttcc tgcatacgac gtgccgcagc ttctgttatt ccacgataaa attcctaacc
    15121 gaattcaaat ccttcagact attcagctct tccttcagct cccgctgacg gcgataaat
//
LOCUS       DAJVUN010000092        15156 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.092, whole genome shotgun sequence.
ACCESSION   DAJVUN010000092 DAJVUN010000000
VERSION     DAJVUN010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15156
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.092"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(124..1407)
                     /gene="gltA"
                     /locus_tag="OQQ76_002431"
     CDS             complement(124..1407)
                     /gene="gltA"
                     /locus_tag="OQQ76_002431"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HCS1968901.1"
                     /translation="MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD
                     PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD
                     EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI
                     AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER
                     AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML
                     EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD
                     DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW
                     IAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR"
     gene            complement(1613..1720)
                     /locus_tag="OQQ76_002432"
     CDS             complement(1613..1720)
                     /locus_tag="OQQ76_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968902.1"
                     /translation="MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV"
     gene            2101..2505
                     /gene="sdhC"
                     /locus_tag="OQQ76_002433"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
     CDS             2101..2505
                     /gene="sdhC"
                     /locus_tag="OQQ76_002433"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1968903.1"
                     /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFV
                     AVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFG
                     YLEETFEAGKRSAKISFVITVVLSLLAGVLVW"
     gene            2499..2846
                     /gene="sdhD"
                     /locus_tag="OQQ76_002434"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
     CDS             2499..2846
                     /gene="sdhD"
                     /locus_tag="OQQ76_002434"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase membrane anchor subunit"
                     /protein_id="HCS1968904.1"
                     /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT
                     YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYAKPLALRLMLQLVIVVALV
                     VYVIYGFVVVWGV"
     gene            2846..4612
                     /gene="sdhA"
                     /locus_tag="OQQ76_002435"
     CDS             2846..4612
                     /gene="sdhA"
                     /locus_tag="OQQ76_002435"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HCS1968905.1"
                     /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS
                     HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM
                     GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
                     FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN
                     TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY
                     APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS
                     RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV
                     SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN
                     RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT
                     QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM
                     TRRSVNMEPKLRPAFPPKIRTY"
     gene            4628..5344
                     /gene="sdhB"
                     /locus_tag="OQQ76_002436"
     CDS             4628..5344
                     /gene="sdhB"
                     /locus_tag="OQQ76_002436"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit
                     SdhB"
                     /protein_id="HCS1968906.1"
                     /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKE
                     KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD
                     LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
                     SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK
                     GLNPTRAIGHIKSMLLQRNA"
     gene            5645..8446
                     /gene="sucA"
                     /locus_tag="OQQ76_002437"
     CDS             5645..8446
                     /gene="sucA"
                     /locus_tag="OQQ76_002437"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HCS1968907.1"
                     /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST
                     FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR
                     GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEAL
                     KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG
                     AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ
                     DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV
                     RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV
                     GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI
                     DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL
                     YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE
                     AVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF
                     HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW
                     EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL
                     CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT
                     FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM
                     QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY
                     MSVHQKQQQDLVNDALNVE"
     gene            8461..9678
                     /gene="odhB"
                     /locus_tag="OQQ76_002438"
     CDS             8461..9678
                     /gene="odhB"
                     /locus_tag="OQQ76_002438"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HCS1968908.1"
                     /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK
                     VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ
                     QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKSPAKESAP
                     AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK
                     QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP
                     RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS
                     TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIK
                     ELLEDPTRLLLDV"
     gene            9954..11120
                     /gene="sucC"
                     /locus_tag="OQQ76_002439"
     CDS             9954..11120
                     /gene="sucC"
                     /locus_tag="OQQ76_002439"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HCS1968909.1"
                     /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV
                     VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT
                     DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQG
                     RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA
                     DGNALFRQLDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKVVLVNIFGGIVRCDLIADGIIG
                     AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK"
     gene            11120..11989
                     /gene="sucD"
                     /locus_tag="OQQ76_002440"
     CDS             11120..11989
                     /gene="sucD"
                     /locus_tag="OQQ76_002440"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HCS1968910.1"
                     /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG
                     GTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT
                     LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE
                     AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA
                     AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS
                     LADIGEALKTVLK"
     gene            complement(12093..12815)
                     /gene="mngR"
                     /locus_tag="OQQ76_002441"
     CDS             complement(12093..12815)
                     /gene="mngR"
                     /locus_tag="OQQ76_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-D-glycerate transport/metabolism system
                     transcriptional repressor MngR"
                     /protein_id="HCS1968911.1"
                     /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV
                     TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF
                     EVIPADDFLQQQLQITAQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS
                     KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKISRGYLVDGRVFEY
                     SRNAFNTDDYKFTLIAQRKSSR"
     gene            12984..14900
                     /gene="mngA"
                     /locus_tag="OQQ76_002442"
     CDS             12984..14900
                     /gene="mngA"
                     /locus_tag="OQQ76_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001393949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS 2-O-a-mannosyl-D-glycerate transporter
                     subunit IIABC"
                     /protein_id="HCS1968912.1"
                     /translation="MNLTTLTQRDALRLNARFTSREEAIHALTQRLAALGKISSTEQF
                     LEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVV
                     LLAIPPNEAGTMHMQLLTALTTRLADDEIRARIQSATTPDELLSALDDKGGTQPSASF
                     SNAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVYVEKQGANGIEGRLTADQLNS
                     ATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDT
                     QPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMY
                     RKLGGGLLGILMVPVLAAYTAYSLADKPALALGFAAGLAANMIGSGFLGAVVGGLIAG
                     YLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNG
                     LSGSNALLLGAIFGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFT
                     VTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTG
                     AIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRRH
                     AVKHGNYLTDGVMP"
     gene            14918..>15156
                     /locus_tag="OQQ76_002443"
     CDS             14918..>15156
                     /locus_tag="OQQ76_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968913.1"
                     /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD
                     NEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAG"
BASE COUNT         3612 a         3828 c         4144 g         3572 t
ORIGIN      
        1 ttttagaata tatgaatgtc cgatagtgga ttttattttt acaatttttt gtgtttaggc
       61 atataaaaat taacccgcca tttgaacggc gggttaaaat atttacaact tagcaatcaa
      121 ccattaacgc ttgatatcgc ttttaaagtc gcgtttttca tatcctgtat acagctgacg
      181 cggacgggca atcttcatac cgtcactgtg catttcgctc cagtgggcga tccagccaac
      241 ggtacgtgcc attgcgaaaa tgacggtgaa catggaagac ggaataccca tcgctttcag
      301 gatgatacca gagtagaaat cgacgttcgg gtacagtttc ttctcgataa agtacgggtc
      361 gttcagcgcg atgttttcca gctccatagc cacttccagc aggtcatctt tggtgcccag
      421 ctctttcaga acttcatggc aggtttcacg cattacggtg gcgcgcgggt cgtaattttt
      481 gtacacgcgg tgaccgaagc ccatcaggcg gaaagaatca tttttatctt tcgcacgacg
      541 aacaaattcc ggaatgtgtt taacggagct aatttcttcc agcattttca gcgccgcttc
      601 gttagcacca ccgtgcgcag gtccccacag tgaagcaata cctgctgcga tacaggcaaa
      661 cgggttcgca cccgaagagc cagcggtacg cacggtggag gtagaggcgt tctgttcatg
      721 gtcagcgtgc aggatcagaa tacggtccat agcacgttcc agaatcggat taacttcata
      781 cggttcgcac ggcgtggaga acatcatatt caggaagtta ccggcatagg agagatcgtt
      841 gcgcggataa acaaatggct gaccaatgga atacttgtaa cacatcgcgg ccatggtcgg
      901 cattttcgac agcaggcgga acgcggcaat ttcacgatga cgaggattgt taacatccag
      961 cgagtcgtga tagaacgccg ccagcgcgcc ggtaatacca cacatgactg ccattggatg
     1021 tgagtcgcga cggaaagcgt ggaacagacg ggtaatctgc tcgtggatca tggtatgacg
     1081 ggtcaccgta gttttaaatt cgtcatactg ttcctgagtc ggtttttcac cattcagcag
     1141 gatgtaacaa acttccaggt agttagaatc ggtcgccagc tgatcgatcg ggaaaccgcg
     1201 gtgcagcaaa ataccttcat caccatcaat aaaagtaatt ttagattcgc aggatgcggt
     1261 tgaagtgaag cctgggtcaa aggtgaacac accttttgaa ccgagagtac ggatatcaat
     1321 aacatcttga cccagcgtgc ctttcagcac atccagttca acagctgtgt ccccgttgag
     1381 ggtgagtttt gcttttgtat cagccattta aggtctcctt agcgccttat tgcgtaagac
     1441 tgccggaact taaatttgcc ttcgcacatc aacctggctt tacccgtttg ttatttggct
     1501 cgccgctctg tgaaagaggg gaaaacctgg gtacagagct ctgggcgctt gcaggtaaag
     1561 gatccattga tgacgaataa atggcgaatc aagtacttag caatccgaat tattaaactt
     1621 gtctaccact aataactgtc ccgaatgaat tggtcaatac ttccacactg ttacataagt
     1681 taatcttagg tgaaataccg acttcataac ttttacgcat tatatgcttt tcctggtaat
     1741 gtttgtaaca actttgttga gcgattgtca aattagatga ttaaaaatta aataaatgtt
     1801 gttatcgtga cctggatcac tgttcaggat aaaacccgac aaactatatg taggttaatt
     1861 gtaatgattt tgtgaacagc ctatactgcc gccaggtctc cggaacaccc tgcaatcccg
     1921 agccacccag cgttgtaacg tgtcgttttc gcatctggaa gcagtgtttt gcatgacgcg
     1981 cagttataga aaggacgctg tctgacccgc aagcagaccg gaggaaggaa atcccgacgt
     2041 ctccaggtaa cagaaagtta acctctgtgc ccgtagtccc cagggaataa taagaacagc
     2101 atgtgggcgt tattcatgat aagaaatgtg aaaaaacaaa gacctgttaa tctggaccta
     2161 cagaccatcc ggttccccat cacggcgata gcgtccattc tccatcgcgt ttccggtgtg
     2221 atcacctttg ttgcagtggg catcctgctg tggcttctgg gtaccagcct ctcttcccct
     2281 gaaggtttcg agcaagcttc cgcgattatg ggcagcttct tcgtcaaatt tatcatgtgg
     2341 ggcatcctta ccgctctggc gtatcacgtc gtcgtaggta ttcgccacat gatgatggat
     2401 tttggctatc tggaagaaac attcgaagcg ggtaaacgct ccgccaaaat ctcctttgtt
     2461 attactgtcg tgctttcact tctcgcagga gtcctcgtat ggtaagcaac gcctccgcat
     2521 taggacgcaa tggcgtacat gatttcatcc tcgttcgcgc taccgctatc gtcctgacgc
     2581 tctacatcat ttatatggtc ggttttttcg ccaccagtgg cgaactgaca tatgaagtct
     2641 ggatcggttt cttcgcctct gcgttcacca aagtgttcac cctgctggcg ctgttttcta
     2701 tcttgattca tgcctggatc ggcatgtggc aggtgttgac cgactacgct aaaccgctgg
     2761 cattgcgcct gatgctgcaa ctggtgattg tcgttgcact ggtggtttac gtgatttatg
     2821 gattcgttgt ggtgtggggt gtgtgatgaa attgccagtc agagaatttg atgcagttgt
     2881 gattggtgcc ggtggcgcag gtatgcgcgc ggcgctgcaa atttcccaga gcggccagac
     2941 ctgtgcgctg ctctctaaag tcttcccgac ccgttcccat accgtttctg cgcaaggcgg
     3001 cattaccgtt gcgctgggta atacccatga agataactgg gaatggcata tgtacgacac
     3061 cgtaaaaggg tcggactata tcggtgacca ggacgcgatt gaatatatgt gtaaaaccgg
     3121 gccggaagcg attctggaac tcgaacacat gggcctgccg ttctcgcgtc ttgatgatgg
     3181 tcgtatctat caacgtccgt ttggcggtca gtcgaaaaac ttcggcggcg agcaggcggc
     3241 acgcactgcg gcggcggctg accgtaccgg tcacgcactg ttgcacacgc tttatcagca
     3301 gaacctgaaa aaccacacca ccattttctc cgagtggtat gcgctggatc tggtgaagaa
     3361 ccaggatggc gcggtggtgg gttgtactgc actgtgcatc gaaactggtg aagtggttta
     3421 tttcaaagcc cgcgctaccg tgctggcgac tggcggggca gggcgtattt atcagtccac
     3481 cactaacgcc cacattaaca ctggcgacgg cgtcggcatg gctatccgcg caggcgtacc
     3541 ggtgcaggat atggaaatgt ggcagttcca cccgaccggt attgccggtg cgggcgtact
     3601 ggtcaccgaa ggttgccgtg gtgaaggcgg ttatctgctg aacaaacatg gcgaacgctt
     3661 tatggagcgt tatgcgccga acgccaaaga cctggcgggc cgtgatgtgg tggcgcgttc
     3721 catcatgatc gaaatccgtg aaggtcgcgg ctgtgatggt ccgtgggggc cacacgcgaa
     3781 actgaaactc gaccacctgg gtaaagaagt tctcgaatcc cgtctgccgg gcatcctgga
     3841 actctcccgt accttcgctc acgtcgatcc ggtgaaagag ccgatcccgg ttatcccaac
     3901 ctgtcattac atgatgggcg gtattccgac caaagtgacc ggtcaggcgc tgactgtgaa
     3961 tgagaaaggc gaagatgtgg ttgttccggg actgtttgcc gttggtgaaa tcgcttgtgt
     4021 atcggtacac ggcgctaacc gtctgggcgg caactcgctg ctggacctgg tggtctttgg
     4081 tcgtgcggca ggtctgcatc tgcaagagtc tatcgccgag cagggcgcat tgcgcgatgc
     4141 cagcgagtct gatgttgaag catctctgga tcgtctgaac cgctggaaca ataatcgtaa
     4201 tggtgaagat ccggtggcga ttcgtaaagc gctgcaagaa tgtatgcagc ataacttctc
     4261 ggtcttccgt gaaggtgatg cgatggcgaa agggcttgag cagttgaaag ttatccgcga
     4321 gcgtctgaaa aatgcccgtc tggatgacac ttccagcgag ttcaacaccc agcgcgttga
     4381 gtgcctggaa ctggataacc tgatggaaac ggcgtatgca acggctgttt ctgccaactt
     4441 ccgtaccgaa agccgtggcg cgcatagccg cttcgacttc ccggatcgtg atgatgaaaa
     4501 ctggctgtgc cactccctgt atctgccaga gtcggaatcc atgacgcgcc gaagcgtcaa
     4561 catggaaccg aaactgcgcc cggcattccc gccgaagatt cgtacttact aatgcggaga
     4621 caggaaaatg agactcgagt tttcaattta tcgctataac ccggatgttg atgatgctcc
     4681 gcgtatgcag gattacaccc tggaagcgga agaaggtcgc gacatgatgc tgctggatgc
     4741 gcttatccag ctgaaagaga aagatcccag cctgtcgttc cgccgctcct gtcgtgaagg
     4801 tgtgtgcggt tccgacggtc tgaacatgaa cggcaagaat ggtctggcct gtattacccc
     4861 gatttcggca ctcaaccagc cgggcaagaa gattgtgatt cgcccgctgc caggtttacc
     4921 ggtgatccgc gatttggtgg tagacatggg acaattctat gcgcaatatg agaaaattaa
     4981 gccttacctg ttgaataatg gacaaaatcc gccagctcgc gagcatttac agatgccaga
     5041 gcagcgcgaa aaactcgacg ggctgtatga atgtattctc tgcgcatgtt gttcaacctc
     5101 ttgtccgtct ttctggtgga atcccgataa gtttatcggc ccggcaggct tgttagcggc
     5161 atatcgtttc ctgatcgata gccgtgatac cgagactgac agccgcctcg acggtttgag
     5221 cgatgcattc agcgtattcc gctgtcacag catcatgaac tgcgtcagtg tatgtccgaa
     5281 ggggctgaac ccgacgcgcg ccatcggcca tatcaagtcg atgttgttgc aacgtaatgc
     5341 gtaaaccgta ggcctgataa gacgcgcaag cgtcgcatca ggcaaccagt gccggatgcg
     5401 gcgtgaacgc cttatccggc ctacaagtca ttacccgtag gcctgataag cgcagcgcat
     5461 caggcgtaac aaagaaatgc aggaaatctt taaaaactgc ccctgacact aagacagttt
     5521 ttaaaggttc cttcgcgagc cactacgtag acaagagctc gcaagtgaac cccggcacgc
     5581 acatcactgt gcgtggtagt atccacggcg aagtaagcat aaaaaagatg cttaagggat
     5641 cacgatgcag aacagcgctt tgaaagcctg gttggactct tcttacctct ctggcgcaaa
     5701 ccagagctgg atagaacagc tctatgaaga cttcttaacc gatcctgact cggttgacgc
     5761 taactggcgt tcgacgttcc agcagttacc tggtacggga gtcaaaccgg atcaattcca
     5821 ctctcaaacg cgtgaatatt tccgccgcct ggcgaaagac gcttcacgtt actcttcaac
     5881 gatctccgac cctgacacca atgtgaagca ggttaaagtc ctgcagctca ttaacgcata
     5941 ccgcttccgt ggtcaccagc atgcgaatct cgatccgctg ggactgtggc agcaagataa
     6001 agtggccgat ctggatccgt ctttccacga tctgaccgaa gcagacttcc aggaaacctt
     6061 caacgtcggt tcatttgcca gcggcaaaga aaccatgaaa ctcggcgagc tgctggaagc
     6121 cctcaagcaa acctactgcg gcccgattgg tgccgagtat atgcacatca ccagcaccga
     6181 agaaaaacgc tggatccaac agcgtatcga gtctggtcgc gcgactttca atagcgaaga
     6241 gaaaaaacgc ttcttaagcg aactgaccgc cgctgaaggc cttgaacgtt acctcggcgc
     6301 aaaattccct ggcgcaaaac gcttctcgct ggaaggcggt gacgcgttaa tcccgatgct
     6361 taaagagatg atccgccacg ctggcaacag cggcacccgc gaagtggttc tcgggatggc
     6421 gcaccgtggt cgtctgaacg tgctggtgaa cgtgctgggt aaaaaaccgc aagacttgtt
     6481 cgacgagttc gccggtaaac ataaagaaca cctcggcacg ggtgacgtga aataccacat
     6541 gggcttctcg tctgacttcc agaccgatgg cggcctggtg cacctggcgc tggcgtttaa
     6601 cccgtctcac cttgagattg taagcccggt agttatcggt tctgttcgtg cccgtctgga
     6661 cagacttgat gagccgagca gcaacaaagt gctgccaatc accatccacg gtgacgccgc
     6721 agtgaccggg cagggcgtgg ttcaggaaac cctgaacatg tcgaaagcgc gtggttatga
     6781 agttggcggt acggtacgta tcgttatcaa caaccaggtt ggtttcacca cctctaatcc
     6841 gctggatgcc cgttctacgc cgtactgtac tgatatcggt aagatggttc aggccccgat
     6901 tttccacgtt aacgcggacg atccggaagc cgttgccttt gtgacccgtc tggcgctcga
     6961 tttccgtaac acctttaaac gtgatgtctt catcgacctg gtgtgctacc gccgtcacgg
     7021 ccacaacgaa gccgacgagc cgagcgcaac ccagccgctg atgtatcaga aaatcaaaaa
     7081 acatccgaca ccgcgcaaaa tctacgctga caagctggag caggaaaaag tggcgacgct
     7141 ggaagatgcc accgagatgg ttaacctgta ccgcgatgcg ctggatgctg gcgattgcgt
     7201 agtggcagag tggcgtccga tgaacatgca ctctttcacc tggtcgccgt acctcaacca
     7261 cgaatgggac gaagagtacc cgaacaaagt tgagatgaag cgcctgcagg agctggcgaa
     7321 acgcatcagc acggtgccgg aagcagttga aatgcagtct cgcgttgcca agatttatgg
     7381 cgatcgccag gcgatggctg ccggtgagaa actgttcgac tggggcggtg cggaaaacct
     7441 cgcttacgcc acgctggttg acgaaggcat tccggttcgc ctgtcgggtg aagactccgg
     7501 tcgcggtacc ttcttccacc gccacgcggt gatccacaac cagtctaacg gttccactta
     7561 cacgccgctg caacacatcc ataacgggca gggcgcgttc cgcgtctggg actccgtact
     7621 gtctgaagaa gcagtgctgg cgtttgaata cggttatgcc accgcagaac cacgcactct
     7681 gaccatctgg gaagcgcagt tcggtgactt cgctaacggt gctcaggtgg ttatcgacca
     7741 gttcatctcc tctggcgaac agaaatgggg ccggatgtgt ggtctggtga tgttgctgcc
     7801 gcacggttat gaagggcagg ggccggagca ctcctccgcg cgtctggaac gttatctgca
     7861 actttgtgct gagcaaaaca tgcaggtgtg cgtaccgtct accccggcac aggtttacca
     7921 catgctgcgt cgtcaggcgc tgcgcgggat gcgtcgtccg ctggtcgtga tgtcgccgaa
     7981 atccctgctg cgtcatccgc tggcggtttc cagcctcgaa gaactggcga acggcacctt
     8041 cctgccagcc atcggtgaaa tcgacgagct tgatccgaag ggcgtgaagc gcgtagtgat
     8101 gtgttctggt aaggtttatt acgacctgct ggaacagcgt cgtaagaaca atcaacacga
     8161 tgtcgccatt gtgcgtatcg agcaactcta cccgttcccg cataaagcga tgcaggaagt
     8221 gttgcagcag tttgctcacg tcaaggattt tgtctggtgc caggaagagc cgctcaacca
     8281 gggcgcatgg tactgcagcc agcatcattt ccgtgaagtg attccgtttg gggcttctct
     8341 gcgttatgca ggccgcccgg cctccgcctc tccggcggta gggtatatgt ccgttcacca
     8401 gaaacagcaa caagatctgg ttaatgacgc gctgaacgtc gaataaataa aggatacaca
     8461 atgagtagcg tagatattct ggtccctgac ctgcctgaat ccgtagccga tgccaccgtc
     8521 gcaacctggc ataaaaaacc cggcgacgca gtcgtacgtg atgaagtgct ggtagaaatc
     8581 gaaactgaca aagtggtact ggaagtaccg gcatcagcag acggcattct ggatgcggtt
     8641 ctggaagatg aaggtacaac cgtaacgtct cgtcagatcc ttggtcgcct gcgtgaaggc
     8701 aacagcgccg gtaaagaaac cagcgccaaa tctgaagaga aagcgtccac tccggcgcaa
     8761 cgccagcagg cgtctctgga agagcaaaac aacgatgcgt taagcccggc gatccgtcgc
     8821 ttgctggctg aacataacct cgacgccagc gctattaaag gcaccggcgt gggtggtcgt
     8881 ctgacccgtg aagatgtgga aaaacatctg gcgaaatccc cggcgaaaga gtctgcaccg
     8941 gcagcggctg ctccggcggc gcaaccggct ctggctgcac gtagtgaaaa acgtgtcccg
     9001 atgactcgcc tgcgtaagcg tgtggcagag cgtctgctgg aagcgaaaaa ctccaccgcc
     9061 atgctgacca cgttcaacga agtcaacatg aagccgatta tggatctgcg taagcagtac
     9121 ggtgaagcgt ttgaaaaacg ccacggcatc cgtctgggct ttatgtcctt ctacgtgaaa
     9181 gcggtggttg aagccctgaa acgttacccg gaagtgaatg cttctatcga cggcgatgac
     9241 gtggtttacc acaactattt cgacgtcagc atggcggttt ctacgccgcg cggcctggtg
     9301 acgccggttc tgcgtgatgt cgataccctc ggcatggcag acatcgagaa gaaaatcaaa
     9361 gagctggcag tcaaaggccg tgatggcaag ctgaccgttg aagatctgac cggtggtaac
     9421 ttcaccatca ccaacggtgg tgtgttcggt tccctgatgt ctacgccgat catcaacccg
     9481 ccgcagagcg caattctggg tatgcacgct atcaaagatc gtccgatggc ggtgaatggt
     9541 caggttgaga tcctgccgat gatgtacctg gcgctgtcct acgatcaccg tctgatcgat
     9601 ggtcgcgaat ccgtgggctt cctggtaacg atcaaagagt tgctggaaga tccgacgcgt
     9661 ctgctgctgg acgtgtagta gtttaagttt cacctgcact gtagacagga taaggcatta
     9721 tcgccttctc cggcaattga agcctgatgc gacgcttaac gcgtcttatc aggcctacga
     9781 gaagcaccaa tgtaggtcgg ataaggcgct tgcgccgcat ccgacaagcg atgcctgatg
     9841 cgacacttac gcgtcttatc gggcctacag gtgaccgaca atgcccggaa gcgatacgaa
     9901 atattcggtc tacggtttaa aagataacga ttactgaagg atggacagaa cacatgaact
     9961 tacatgaata tcaggcaaaa caactttttg cccgctatgg cttaccagca ccggtgggtt
    10021 atgcctgtac tactccgcgc gaagcagaag aagccgcttc aaaaatcggt gccggtccgt
    10081 gggtagtgaa atgtcaggtt cacgctggtg gccgcggtaa agcgggcggt gtgaaagttg
    10141 taaacagcaa agaagacatc cgtgcttttg cagaaaattg gctcggcaag cgtctggtaa
    10201 cgtatcaaac agatgccaat ggccaaccgg ttaaccagat tctggttgaa gcagcgaccg
    10261 atattgctaa agagctgtat ctcggtgccg ttgtagaccg tagttcccgt cgtgtggtct
    10321 ttatggcctc cactgaaggc ggcgtggaaa tcgaaaaagt ggcggaagaa actccgcagc
    10381 tgatccataa agttgcgctt gatccgctga caggcccgat gccgtatcag ggacgcgagc
    10441 tggcgttcaa actgggtctg gaaggtaaac tggttcagca gttcaccaaa atcttcatgg
    10501 gtctggcgac cattttccta gagcgcgacc tggcgttgat cgaaatcaac ccgctggtca
    10561 tcaccaaaca gggtgatctg atttgcctcg acggcaaact gggcgctgat ggcaacgcac
    10621 tgttccgcca gcttgatctg cgcgaaatgc gtgaccagtc gcaggaagat ccgcgtgaag
    10681 cacaggctgc acagtgggaa ctgaactacg ttgcgctgga cggtaacatc ggttgtatgg
    10741 ttaacggcgc aggtctggcg atgggtacga tggacatcgt taaactgcac ggcggcgaac
    10801 cggctaactt ccttgacgtt ggcggcggcg caaccaaaga acgtgtaacc gaagcgttca
    10861 aaatcatcct ctctgacgac aaagtgaaag tcgttctggt taacatcttc ggcggtatcg
    10921 ttcgttgcga cctgatcgct gacggtatca tcggcgcggt agcagaagtg ggtgttaacg
    10981 taccggtcgt ggtacgtctg gaaggtaaca acgccgaact cggcgcgaag aaactggctg
    11041 acagcggcct gaatattatt gcagcaaaag gtctgacgga tgcagctcag caggttgttg
    11101 ccgcagtgga ggggaaataa tgtccatttt aattgataaa aacaccaagg ttatctgcca
    11161 gggctttact ggtagccagg ggactttcca ctcagaacag gccattgcat acggcactaa
    11221 aatggttggc ggcgtaaccc caggtaaagg cggtactacc cacctcggcc tgccggtgtt
    11281 caacaccgtg cgtgaagctg ttgctgctac tggcgctacc gcttctgtta tctacgtacc
    11341 agcaccgttc tgcaaagact ccattctgga agctattgat gcaggcatca aactgattat
    11401 caccatcact gaaggcatcc cgacgctgga tatgctgact gtgaaagtga aactggacga
    11461 agccggcgtt cgtatgatcg gcccgaactg cccgggcgtt atcactccgg gtgaatgcaa
    11521 aatcggtatc cagccgggtc acattcacaa accgggtaaa gtgggtatcg tttcccgttc
    11581 cggtacactg acctatgaag cggttaaaca gaccacggat tacggtttcg gtcagtcgac
    11641 ctgtgttggt atcggcggtg acccgatccc aggctctaac tttatcgaca tcctcgaaat
    11701 gttcgaaaaa gatccgcaga ccgaagcgat cgtgatgatc ggtgagatcg gcggtagcgc
    11761 tgaagaagaa gcggcagcgt acatcaaaga gcacgttacc aagccagttg taggttacat
    11821 cgctggtgtg actgcgccga aaggcaaacg tatgggccac gcgggtgcga tcattgccgg
    11881 tgggaaaggg actgcggatg agaaattcgc tgctctggaa gccgcaggcg tgaaaaccgt
    11941 tcgcagcctg gcggatatcg gtgaagcact gaaaactgtt ctgaaataaa tatctgtaat
    12001 aagaaatagc cctcgccgct tccctctaca ggaatggcga agggctgtcg gtttcgacat
    12061 ggttggccat cgtatgatgg ccttttttgt gcttatcgcg atgattttcg ctgcgctatc
    12121 agggtaaatt tatagtcatc ggtattaaaa gcgttgcggc tatattcaaa cacccgacca
    12181 tcaactaaat atccacgcga tattttttca agaatcggct ttgtctggct gatattaagc
    12241 agacggctca tctcttcggt tggcatcaga ggaatgattt cctgttcgct acgatcgata
    12301 accatcttct tcacttcttc aataaagtga tatttcgaat tttccatgac ctgccaggtg
    12361 agatccggga acaacgcaag cggcatccag gtttcttcca gcgccattgg cttttgcttg
    12421 cgatagcgca cgcgcttcac atgccacaca cgatcctgcg cggtgatttg tagctgttgc
    12481 tgaagaaaat cgtcagccgg aatcacttca aatatcagga cttcactgtg tgtatcgacg
    12541 tgacggtccg acagtttttc atcaaaactg gttaactgaa aaatatcgta attgacccgc
    12601 tcttctttga cgtaagtccc gctgccctga atgctttcga ggatctgctg ctcgactagc
    12661 tggcgcaaag cctgacgcac cgtaacccgg ctgacgccaa actctgtttg tagcgctgat
    12721 tcagtgggta acgcatcgcc aggtttaagc tcgccacgcg caatttgttc acgaatgcga
    12781 tcggcaatct gccggtataa gggcttgtgt cccattttta gtatctcatt aatacgaatt
    12841 tagccattat gcccgataaa ttcatcctgt aaataatgca aatacaatac aaataatttc
    12901 aatcaagtga aattgatcat ataatagtat tgttttatcg ggcacactgg cgcgactata
    12961 aaaacgatca agtgaggatc atgatgaatc tgacgactct gacccaacgc gatgcgttgc
    13021 gtctgaatgc gcgctttacc agccgtgaag aggccatcca cgcgttgact caacgtcttg
    13081 ctgctctggg gaaaatttcc agtactgagc aatttctgga agaagtgtat cgccgtgaaa
    13141 gccttggccc gaccgcctta ggtgaagggt tggctgtgcc gcatggcaaa actgctgcgg
    13201 taaaagaagc ggcgtttgcg gtcgccacac tcagcgagcc gcttcagtgg gaaggcgttg
    13261 atggcccgga agcagttgat ttagtggtgc tgctggcgat tccccccaat gaagcgggta
    13321 ctatgcatat gcaactgctg acagcgctga ccacgcgcct tgcggatgat gagattcggg
    13381 cgcgtataca gtcggcgacg acgcctgatg agttgctctc ggcgctggat gacaagggag
    13441 gcacgcaacc ttctgcctct ttttccaacg cgccaactat cgtctgcgta acggcctgtc
    13501 cggcgggtat tgctcacacc tatatggctg cggaatatct ggaaaaagcc ggacgcaaac
    13561 tcggcgtaaa tgtttacgtt gaaaaacaag gcgctaacgg cattgaaggg cgtttaacgg
    13621 cggatcaact caatagtgca accgcctgta tttttgcggc tgaagtcgcc atcaaggaga
    13681 gtgagcgttt taatggcatt cccgcgcttt cagtgcctgt tgccgagccg attcgccatg
    13741 cagaagcgtt gatccaacaa gcgcttaccc tcaagcgtag cgatgagacg cgtaccgtac
    13801 agcaagatac gcaaccggtg aaaagtgtca aaacggagct gaaacaggca ctgttgagcg
    13861 gaatctcttt tgccgtaccg ttgattgtcg cggggggcac ggtgctggcg gtcgcggtat
    13921 tactgtcgca aatcttcggg ctacaagatc tgtttaatga agaaaactcc tggctgtgga
    13981 tgtaccgcaa gctgggcggc gggctgctcg gaattttgat ggtaccggtg ctcgcggcct
    14041 ataccgccta ttctctggca gataaaccgg cgttagcgct aggctttgcg gctggacttg
    14101 ccgccaacat gatcggctcc gggtttctcg gcgcggttgt tggcggattg atagccggtt
    14161 acttgatgcg ctgggtgaaa aatcacttgc gtcttagcag taaattcaat ggattcctga
    14221 ctttttatct ctacccggtg ctcggtacgt tgggagcggg cagtctgatg ctgtttgtgg
    14281 tgggagaacc tgtcgcatgg atcaataact cgcttaccgc ctggctgaac ggtctgtcag
    14341 gaagtaacgc gctgttgctg ggtgccattt tcggttttat gtgttccttt gaccttggag
    14401 ggccagtgaa caaagccgct tatgcattct gcctgggcgc aatggcgaac ggcgtttacg
    14461 gcccgtatgc cattttcgcc tccgtcaaaa tggtttcggc atttaccgta accgcttcca
    14521 cgatgctcgc accgcgcctg tttaaagagt ttgaaattga gaccgggaaa tccacctggc
    14581 tgttagggct ggcaggtatt accgaagggg cgatcccgat ggcgattgaa gatccgctgc
    14641 gggttattgg ttcgtttgtg ctgggctcta tggtaacggg cgctattgtc ggtgcgatga
    14701 atatcggcct ttcgacaccc ggtgccggca ttttctcgct ctttttactt catgataatg
    14761 gcgcgggcgg tgttatggcg gcaattggct ggtttggtgc ggcattggtg ggggctgcaa
    14821 tctcgactgc aattctcctg atctggcggc gtcacgcggt taagcatggc aactatctga
    14881 ctgatggcgt aatgccataa acaaaaagga aacgacgatg aaagcggtat ctcgcgttca
    14941 catcaccccg catatgcact gggatcgaga gtggtatttc accaccgaag agtcacgtat
    15001 tctgctggtc aataatatgg aagagatcct gtgccgactg gaacaggaca acgaatacaa
    15061 atattacgta ctcgacgggc aaacggcgat cctcgaagat tatttcgcgg tgaaaccgga
    15121 aaacaaagac cgtgtgaaga aacaggtaga agccgg
//
LOCUS       DAJVUN010000093        15141 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.093, whole genome shotgun sequence.
ACCESSION   DAJVUN010000093 DAJVUN010000000
VERSION     DAJVUN010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15141
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.093"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(653..1849)
                     /gene="hemY"
                     /locus_tag="OQQ76_002444"
     CDS             complement(653..1849)
                     /gene="hemY"
                     /locus_tag="OQQ76_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX biogenesis protein HemY"
                     /protein_id="HCS1968914.1"
                     /translation="MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL
                     AIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQ
                     VEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV
                     RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHV
                     GDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIEC
                     DDHDTAQQIIIDGLKRQYDDRLLLPIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTL
                     GQSLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL
                     QNNPPQ"
     gene            complement(1852..3117)
                     /gene="hemX"
                     /locus_tag="OQQ76_002445"
     CDS             complement(1852..3117)
                     /gene="hemX"
                     /locus_tag="OQQ76_002445"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1968915.1"
                     /translation="MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAI
                     AIALAAGVGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLK
                     QANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA
                     LLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRL
                     ADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQD
                     IYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQL
                     SQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPAPAPAPAPAPA
                     PAPAPAPAPAPAPAPAPQGDTPAAAPQGE"
     gene            complement(3139..3879)
                     /gene="hemD"
                     /locus_tag="OQQ76_002446"
     CDS             complement(3139..3879)
                     /gene="hemD"
                     /locus_tag="OQQ76_002446"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HCS1968916.1"
                     /translation="MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGRQLPQLA
                     DQLAALGESDLLFALSQHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQK
                     ILYPQDREISEVLLQLPELQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCKCYQR
                     CAIHYDGAEEAMRWQSREVTMVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERL
                     AKLARELGWQDIKVADNADNDALLRALQ"
     gene            complement(3876..4817)
                     /gene="hemC"
                     /locus_tag="OQQ76_002447"
     CDS             complement(3876..4817)
                     /gene="hemC"
                     /locus_tag="OQQ76_002447"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HCS1968917.1"
                     /translation="MLDNVLRIATRQSPLALWQAHYVKDKLMTSHPGLVVELVPMVTR
                     GDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERE
                     DPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD
                     NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDARTRELLAA
                     LNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGER
                     RGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA"
     gene            5204..7750
                     /gene="cyaA"
                     /locus_tag="OQQ76_002448"
     CDS             5204..7750
                     /gene="cyaA"
                     /locus_tag="OQQ76_002448"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HCS1968918.1"
                     /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY
                     HHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMG
                     STSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENR
                     FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTL
                     YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
                     NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVC
                     EKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQ
                     SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT
                     FIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLY
                     IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF
                     RNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTIL
                     GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS
                     GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEG
                     IIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
                     SFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS"
     gene            complement(7790..8110)
                     /gene="cyaY"
                     /locus_tag="OQQ76_002449"
     CDS             complement(7790..8110)
                     /gene="cyaY"
                     /locus_tag="OQQ76_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HCS1968919.1"
                     /translation="MNDSEFHRLADQLWLTIEEHLDDWDGDSDIDCEINGGVLTITFE
                     NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGET
                     VSFR"
     gene            8573..8776
                     /locus_tag="OQQ76_002450"
     CDS             8573..8776
                     /locus_tag="OQQ76_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HCS1968920.1"
                     /translation="MKNVFKVLTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVET
                     QTQSTVPDKNDRATGDGPSQVNY"
     gene            8813..9637
                     /gene="dapF"
                     /locus_tag="OQQ76_002451"
     CDS             8813..9637
                     /gene="dapF"
                     /locus_tag="OQQ76_002451"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HCS1968921.1"
                     /translation="MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQ
                     LLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANG
                     RMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHC
                     VIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACG
                     SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL"
     gene            9634..10341
                     /locus_tag="OQQ76_002452"
     CDS             9634..10341
                     /locus_tag="OQQ76_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HCS1968922.1"
                     /translation="MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVP
                     HPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSL
                     DDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQ
                     HYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLH
                     EIALMLPELLERWIERV"
     gene            10338..11234
                     /gene="xerC"
                     /locus_tag="OQQ76_002453"
     CDS             10338..11234
                     /gene="xerC"
                     /locus_tag="OQQ76_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HCS1968923.1"
                     /translation="MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG
                     LQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS
                     APKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL
                     DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISAR
                     NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT
                     HLDFQHLASVYDAAHPRAKRGK"
     gene            11234..11950
                     /gene="yigB"
                     /locus_tag="OQQ76_002454"
     CDS             11234..11950
                     /gene="yigB"
                     /locus_tag="OQQ76_002454"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase YigB"
                     /protein_id="HCS1968924.1"
                     /translation="MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHP
                     ALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAM
                     INFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHG
                     RSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTW
                     DSRLLPHLEISRLASLTSLI"
     gene            12034..14196
                     /gene="uvrD"
                     /locus_tag="OQQ76_002455"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             12034..14196
                     /gene="uvrD"
                     /locus_tag="OQQ76_002455"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HCS1968925.1"
                     /translation="MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA
                     WLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH
                     MDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
                     SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL
                     VDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAET
                     IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVV
                     NRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL
                     SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
                     AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN
                     LEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLE
                     FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE
                     VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAKFG
                     EGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV"
     gene            complement(14241..15071)
                     /locus_tag="OQQ76_002456"
     CDS             complement(14241..15071)
                     /locus_tag="OQQ76_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000603127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HCS1968926.1"
                     /translation="MILQTDFSLKDGAVSAMKGVAFGVDHNLKIFDLTHEIPPYNIWE
                     GAYRLYQTASYWPQGSVFVSVVDPGVGTDRKSVVLKTKNGQYFVSPDNGTLTLVAQTL
                     GIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPAKVVEL
                     SYQKAKATKGEVKGNIPILDIQYGNVWSNISDELLNQAEIKLNDTLCVTISEGSQQKY
                     AGKMPYVASFGDVPEGQPMVYLNSLLNVSVALNMDNFAQKHQVASGADWNIDVKKCAK
                     "
BASE COUNT         3433 a         3945 c         4100 g         3663 t
ORIGIN      
        1 caaaatgatg acgtaattaa gcattgataa ttgagatccc tctccctgac aggatgatta
       61 cataaataat agtgacaaaa ataaattatt tatttatcca gaaaatgaat tggaaaatca
      121 ggagagcgtt ttcaatccta cctctggcgc agttgatatg taaggcaggt ttattatatc
      181 gcgttgatta ttgatgcttt tttagtttta acggcaatta atatatgtgt tattaattga
      241 atgaatttta tcattcataa taagtatgtg taggatcaag ctcaggttaa atattcactc
      301 aggaagttat tactcaggaa gcaaagagga ttacagaatt atctcataac aagtgttaag
      361 ggatgttatt tcccgattct ctgtggcata ataaacgagt agatgctcat tccatctctt
      421 atgttcgcct tagtgcctca taaactccgg aatgacgcag agccgtttac ggtgcttatc
      481 gtccactgac agatgtcgct tatgcctcat cagacaccat ggacacaacg ttgagtgaag
      541 cacccacttg ttgtcataca gacctgtttt aacgcctgct ccgtaataag agcaggcgtt
      601 tttttatgca tcagaaaggt cccggaggtg cttgcctccg ggtgagaagg aactactgtg
      661 gtgggttgtt ctgcaacgtt aacatcaaac cgtcgcgacg catcgctgca gcttcttccg
      721 gcttgtgcag tctgtccagc gcgtcggcaa gccatgcgta atcgtaggcg tccggacgtt
      781 gtttcagcgc tgcgcggaag gcgagcgatg cttcctgcca ttctccgtgc ttcatcagtg
      841 actggcccag tgtgctccac aacagcgggc gatcgccgac gtttttgatc tgctggcgca
      901 gcactttttc cagctgttcc ggattgttgg ttttcagtcg aggaatcggc agcagtaggc
      961 gatcgtcgta ctggcgtttc aggccatcga tgataatttg ctgggcagta tcatgatcgt
     1021 cacattcaat aagatgttcc gccattgcca cctgcaatgc tacttgatga cgcgttttcc
     1081 ggctttggtt tttccaccag ttacgcaaac cttcactacc gttatcggca cgcgcctgat
     1141 ccatcaggcc aatccatgcc tgttgttcca gcattgcacg atgttcttca tcaccaacat
     1201 gggctttcgc cattgatggg atgatatcca gcagagaact ccatgcacct gtgcggatat
     1261 acgcctgttc cgccagacgt aatacttccg gatggcgtgg cgtaacttcc agcagcttat
     1321 ccacgccgtg gcgtgcagca tggttttcat tacgggccag ttgcagacgt acacgggtga
     1381 tttctaccgg aatggtgtca ttgccggcca gctccgctgc gcgttccaga tgttggttgg
     1441 cgcgcgcttc atcaccacgt tgttgcgcgg cttcggcagc cagtagatag ttcaccaccg
     1501 gttgttcagc gtgatcggca tttttcgcca tcagcttttc aacttgctga taatcgcctt
     1561 ccgccagttt cagcagcgcc tgttcggtct gcttacgtgc acggcgacgc ttacgcccga
     1621 caaaccaccc acgggtgtgc gcgccagtgc ggaagatccg ccgcagtagc cactcaatgg
     1681 caaacagcac taccatcgcc agaatcaata tgatcgccag gcccgtgacg ctggtttcga
     1741 tattgtagtt gtcggtctgg atcagcacat aaccctgatg accggcaatc atcgggccaa
     1801 ccactatccc cgcaatcagc aaaacaaaga gtaataacac ttttagcatg gttattctcc
     1861 ttgcggcgcg gctgccggag tatcaccttg cggtgcaggt gcaggtgcag gtgcaggtgc
     1921 aggtgcaggt gcaggtgcag gtgcaggtgc aggtgcaggt gcaggcgcag gtgcaggcgc
     1981 aggtgcaggt ttagcttccg ttgtccctgc tgccggttgt gccagcaggt tacgcacgcg
     2041 agtctgcatc agtttttcca gcatcgcctg gctttgcagg gtttccggaa gatccatcga
     2101 gatattttgc tggcttaact ggtccacctc gtcgaggaac gctttggtgg tggcatcatc
     2161 agtatcgtag taagcacgta cccaggtgga gacgttctcc agcgcctggc gataagtctc
     2221 ttcctggtga cgcggtacag cttgtgctgc gaccagcagg cgagagcgaa tattttcgcg
     2281 cagatagata tcctgatttg gcgctaacag cggtacggcg gtgtcatcac gacggcgaat
     2341 cgtaatgaag ttgtccataa agttctgcca gcttttttgc agattgatac gccattcgct
     2401 gatggaactg gaaagctctt caccgtcgga atccatcggc gaaccatcgc tgtcattatc
     2461 ggccagacgc aggttatcta cctgatttga aagctgatta agcttaagga tgatgccgtc
     2521 ataatccacc tgcgaaactg cagaaaggct ggcgatatca tcggtaattg cccgacgaac
     2581 ggtaatcaga ctcgggtcat tcatatccgc caggctggca tctgcacttt tcagcaacgc
     2641 tgcagcggtc gtgacgtcct gatcgctcca cagcttccgt ccggcgagtt tcaccagaaa
     2701 atcggcctga gccagcagcc aggttttagc atcgctgccg gaaatggtgg cgaccttttg
     2761 ttggacttca tccaactgtt ttgccagcgt ttcttgctga cgattcgcct gcttaagctg
     2821 tgcagcttgt tgcttaataa tgccttccag ctcggctttt tggctctcct gggctttttg
     2881 caatgccgtc agttggttag ccagggcatc gctggtggcg gtctgattga cggcctgttg
     2941 tttaccccag ccatacaaac cgacgcccgc cgccagagca atagcgatag ccaccgcgct
     3001 gagaatcaat gcggtattgt tcttactctt tttttctgtt gcgacaggtt gtgacgtggt
     3061 gtccacggcc tccctggtct cttcaaccac ggcggaggtt ttttcttgtt ccgtcattat
     3121 ggcttcctgt tatgagagtt attgtaatgc ccgtaaaagc gcatcgttgt cagcgttatc
     3181 ggcgacctta atgtcttgcc agcccagttc ccgggcgagt ttcgccaaac gctcactgac
     3241 gaccaatagt cgacagcgta gtaaccagtg ctcacgatac cattgtggga tcagcgacca
     3301 gagttgctgc aacatttcac cgctggtaac aacgaccatc gtcacctcgc gggattgcca
     3361 gcgcatcgct tcttctgcac catcgtaatg gattgcgcat cgttgataac atttacaaaa
     3421 agtgacctca gcaccgcgcg ctgtcagggt atccccaatt agctcacgac cgccattgcc
     3481 acgtaatatc agcgcacgtt tgcccgcaat attttgtaat tcaggtaatt gtagcaagac
     3541 ttcgctgatt tcccgatcct gcgggtagag aatcttctgt ccgcttacgg tatgtagcgc
     3601 cagtgcggtg gtgcgtccaa tggcgaaata atcaggtagt cggggccatt tacgatcttg
     3661 ctgatgcagc tgtgattggg caaaagcaac cgcgtgttgc gagagggcaa acaacagatc
     3721 gctctccccc agcgccgcca gttgatcagc aagttgtggt aattgtcgac ccggagaaaa
     3781 ctcaatcagc ggaaaatgcc aggccacctg ccccagtgtg cgcagacggc tcactaactc
     3841 ttctccagcg ggagacgggc gggtgaccag gatactcatg ccggggcgtc tccgttatag
     3901 acttcagcga ggatctcgcg cgcgccgtta ttcagtagct cttctgccag cgaaatcccc
     3961 atttgttcgg catcttgcgg cgcaccgcgg cgttcaccgc gaataatctg cgaaccgtcc
     4021 ggcgcgccga ccagcgcacg cagccagatt tcaccatcaa taagctcggc gtagctacca
     4081 attggcacct gacatccgcc ttcgagacgg gtattcatgg cgcgttctgc ggtaacgcgc
     4141 agtgcagttt cgtggtgatt cagcgcggca agcagctcgc gagtgcgtgc atcatcaagg
     4201 cggcattcaa taccgaccgc accttgtcct accgctggaa gagaaatctc gggtggtaac
     4261 gcggcgcgaa tgcgggactc cagacctaaa cgttttagtc cggctacagc aagaatgatg
     4321 gcatcgtatt cgccgttatc tagtttgctc aggcgagtgc cgacgttgcc gcgcagggag
     4381 cggataatca gatccgggcg gcgttcagcc agttggcact ggcgacgtaa actggacgtc
     4441 ccgacgatac tgcctgctgg taacgcatcc agactgtcat agttattgga cacaaaggca
     4501 tcgcgaggat cttcacgctc acaaatagtg accagtccca gaccttgcgg gaattcaacc
     4561 ggcacatctt tcattgaatg tacggcgata tcggcgcgat tttcgaggag cgcgacttcc
     4621 agctctttta caaataagcc ttttccgcct actttcgcca gcggcgtatc aagaatcaca
     4681 tcgccgcgcg tcaccatcgg taccagttca acgaccaggc ccggatggct cgtcatcaac
     4741 ttgtctttga catagtgtgc ctgccagagt gcaagtgggc tttggcgtgt ggcaattctt
     4801 aaaacattgt ctaacatgct tgttaccgtc attatcatcc gtggtccatc ctaacatcct
     4861 tgccagagtg atgtcagtgt tgtggtgaaa cgtagacgcc tgcgcaaacc gtaaaatgag
     4921 gtctggcagt ggatcctgac aggcgtttca cgccgtcgta ataaggaatt tacagagaat
     4981 aaacggtgct acacttgtat gtagcgcatc tttctttacg gtcaattagc aaggtgttaa
     5041 attgatcacg ttttagacca ttttttcgtc gtgaaactaa aaaaaccagg cgcgaaaagt
     5101 ggtaacggtt acctttgaca tacgaaatat cccgaatgcc gcgtgttacc gttgatgttg
     5161 gcggaatcac agtcatgacg ggtagcaaat caggcgatac gtcttgtacc tctatattga
     5221 gactctgaaa cagagactgg atgccataaa tcaattgcgt gtggatcgcg cgcttgctgc
     5281 tatggggcct gcattccaac aggtctacag tctactgccg acattgttgc actatcacca
     5341 tccgctaatg ccgggttacc ttgatggtaa cgttcccaaa ggcatttgcc tttacacgcc
     5401 tgatgaaact caacgccact acctgaacga gcttgaactg tatcgtggaa tgtcagtaca
     5461 ggatccaccg aaaggtgagc ttccaattac tggtgtatac accatgggca gcacctcgtc
     5521 cgtagggcaa agttgttcct ctgacctgga tatctgggtc tgtcatcaat cctggctcga
     5581 tagcgaagag cgccagttac tacaacgtaa atgtagtctg ctggaaagct gggccgcctc
     5641 gctgggtgtg gaagtcagct tcttcctgat tgatgaaaac cgcttccgtc ataatgaaag
     5701 cggcagcctg gggggcgaag attgtggctc cacccagcat atactgctgc ttgacgaatt
     5761 ttatcgtacc gccgtgcgtc tcgccggtaa gcgtattctg tggaatatgg tgccgtgcga
     5821 cgaagaagag cattacgacg actatgtgat gacgctttac gcgcagggcg tgctgacgcc
     5881 aaatgaatgg ctggatctcg gtggcttaag ctcgctttct gctgaagagt actttggtgc
     5941 cagcctttgg cagctctaca agagtatcga ttccccatac aaagcggtac tgaaaacact
     6001 gctgctggaa gcctattcct gggaataccc gaacccacgt ctgctggcga aagatatcaa
     6061 acagcgtttg cacgacggtg agattgtatc gtttggtctc gatccatact gcatgatgct
     6121 ggagcgtgtt actgaatacc tgacggcgat tgaagatttt acccgtctgg atttagtacg
     6181 tcgctgcttc tatttaaaag tgtgcgaaaa gctcagccgt gaacgcgcct gcgtaggctg
     6241 gcgtcgcgca gtgttgagcc agttagtgag cgagtggggt tgggacgaag ctcgtctggc
     6301 aatgctcgat aaccgcgcta actggaagat tgatcaggtg cgtgaggcgc acaacgagtt
     6361 gctcgacgcg atgatgcaga gctaccgtaa tctgatccgc tttgcgcgtc gcaataacct
     6421 tagcgtctcc gccagtccgc aggatatcgg cgtgctgacg cgtaagctgt atgccgcgtt
     6481 tgaagcatta ccaggtaaag tgacgctggt aaacccgcag atttcacccg atctctcgga
     6541 accgaatctg acctttattt atgtgccgcc gggccgtgct aaccgttcag gttggtatct
     6601 gtataaccgc gcgccaaata ttgagtcgat catcagccat cagccgctgg aatataaccg
     6661 ttacctgaac aaactggtgg cgtgggcatg gtttaacggc ctgctgacct cgcgcacccg
     6721 tttgtatatt aaaggtaacg gcattgtcga tttgcctaag ttgcaggaga tggtcgccga
     6781 cgtgtcgcac catttcccgc tgcgcttacc tgcaccgaca ccgaaggcgc tctacagccc
     6841 gtgtgagatc cgccatctgg cgattatcgt taacctggaa tatgacccga cagcggcgtt
     6901 ccgcaatcag gtggtgcatt ttgatttccg taagctggat gtcttcagct ttggcgagaa
     6961 tcaaaattgc ctggtaggta gcgttgacct gctgtaccgc aactcgtgga acgaagtgcg
     7021 tacgctgcac ttcaacggcg agcaatcgat gatcgaagcc ctgaaaacta ttctcggcaa
     7081 aatgcatcag gacgccgcac cgccagatag cgtggaagtc ttctgttata gccagcatct
     7141 gcgcgggtta atccgtactc gcgtgcagca actggtttct gagtgtattg aactgcgcct
     7201 ttccagcacc cgccaggaaa ccgggcgttt caaggcgctg cgcgtttctg gtcaaacctg
     7261 gggcttgttc ttcgaacgcc tgaatgtatc ggtacagaag ctggagaacg ccatcgagtt
     7321 ttatggcgct atttcgcata acaaactgca cggcctgtca gtgcaggttg aaaccaatca
     7381 cgtcaaatta ccggcggtgg tggacggctt tgctagtgaa gggatcatcc agttcttctt
     7441 cgaagaaacg caagacgaga atggctttaa tatctacatt cttgacgaaa gcaaccgggt
     7501 tgaggtgtat caccactgcg aaggcagcaa agaggaactg gtgcgtgacg tcagtcgctt
     7561 ctactcgtca tcgcacgacc gcttcaccta cggctcaagc ttcatcaact tcaacctgcc
     7621 gcagttctat cagattgtga aggttgatgg tcgtgaacag gtgattccgt tccgcacaaa
     7681 atctatcggt aacatgccgc ctgccaatca ggatcacgat acgccgctat tacagcaata
     7741 tttttcgtga tgaacgtgcc ggaaagcgag gcttatccgg catgcaatct tagcggaaac
     7801 tgactgtttc acccgcctgc tgcgtcgccg cctgttccag caaatcccag aaggtttcgc
     7861 cgctgcgatc gcaaatccac tcatcgcctt tcagatcaaa atggtagccg ccttgtttgg
     7921 ttgccagcca tacctggtgc agcggttcct ggcggttgat aatgattttg ctgccgtttt
     7981 caaaggtaat ggtcagcacg ccgccgttga tttcgcagtc gatatcgctg tcgccatccc
     8041 agtcgtccag atgctcttca atggtcagcc acagttgatc agccaggcga tgaaattcac
     8101 tgtcgttcat tgttgtatcc tgtttttaag tgatggcggc agtatagcgg catggggtca
     8161 gggcttcaaa gtttgcacct ctgctgctgc gttccggcat gattcatccg tcaccggaat
     8221 aatgatgtct ctgtgtggcg aaagatttgt ctcttcatta gggcgcagtt acaccacgcc
     8281 tttccctgtt tctggtaaac attatgatca ggtttaccga gcgagcatcc tcacgctgac
     8341 ggaactaaaa aagccaacaa acaaaccaca ttgcgatagt gcataaagcc atcctggcgc
     8401 gaggtgccga tcacgaaact gccagcagaa cataaatcct cacgagtaag cgttatactc
     8461 gcagcatttc ctcacttttc agacttcata aagagtcgct aaacgcttgc ttttacgcct
     8521 tctcctgcga tgatagaaag cagaaagcga tgaactttac aggcaatcca taatgaaaaa
     8581 cgtgtttaag gtactcactg tattacttac tctcttcagc ctgacgggct gcggtctgaa
     8641 aggtccgctc tatttcccgc ctgcagataa aaatgcaccg ccgccgacca aaccggtaga
     8701 gacgcaaacg caatccacgg tgccggataa aaacgatcgc gccactggcg atggtccatc
     8761 ccaggtgaat tactaaaagt cagtttctgt acccgcgtga ttggagtaaa tgatgcagtt
     8821 ctcgaaaatg catggccttg gcaacgattt tatggtcgtc gacgcggtaa cgcagaatgt
     8881 ctttttttca ccggagctga ttcgtcggct ggcggatcgg cacctggggg tagggtttga
     8941 ccagctgctg gtggttgagc cgccgtatga tcctgaactg gattttcact atcgcatttt
     9001 caatgctgat ggcagtgaag tggcgcagtg cggcaacggt gcgcgctgct ttgcccgttt
     9061 tgtgcgcctg aaagggctga ccaataagcg cgatatccgc gtcagcaccg ccaacgggcg
     9121 gatggttctg accgtcaccg atgatgatct ggtccgcgta aatatgggcg aacccaactt
     9181 cgaaccttcc gctgtgccgt ttcgcgctaa caaagcggaa aagacctata ttatgcgcgc
     9241 cgccgagcag acaatcttat gcggcgtggt gtcgatggga aatccgcatt gcgtgattca
     9301 ggtcgatgat gtcgataccg cggcggtaga aacgcttggt cctgttctgg aaagccacga
     9361 gcgttttccg gagcgcgcca atatcggttt tatgcaagtg gttaagcgcg agcatattcg
     9421 tttacgcgtt tatgagcgtg gggcaggaga aacccaggcc tgcggcagcg gcgcgtgtgc
     9481 ggcggttgca gtagggattc agcaaggttt gctggccgaa gaagtacgcg tggaactccc
     9541 cggcggtcgt cttgatatcg cctggaaagg tccgggtcac ccgttatata tgactggccc
     9601 ggcggtacat gtctatgacg gatttattca tctatgaagc aaccagggga agaactgcag
     9661 gaaacactca cggagcttga tgaccgggcg gttgtcgatt atctgattaa aaatcctgag
     9721 ttttttatcc gtaatgcgcg cgcagtagaa gcgatacgtg tgccgcatcc ggtacgcggc
     9781 accgtttcgt tggtcgagtg gcacatggcc cgcgcacgta atcatattca tgttctggaa
     9841 gagaacatgg cgctgttgat ggaacaggct atcgccaacg aaggcctgtt ttatcgccta
     9901 ctctacctgc agcgcagtct caccgccgcc agcagtctcg acgatatgct gatgcgcttt
     9961 caccgctggg cgcgcgatct cggcctggca ggtgcgagtc tgcgcctgtt tccggatcgc
    10021 tggcgcttag gtgcgccgtc gaaccacact catctggcat taagccgtca gtctttcgaa
    10081 ccgctgcgta ttcagcgttt ggggcaggaa cagcactatc ttgggccgct taacggacca
    10141 gagctgctgg tggtgctacc ggaagcgaaa gcggtgggat cggtggcgat gtcgatgctg
    10201 ggaagcgatg ctgatttggg tgtcgtgctg tttaccagtc gcgatgccag tcactatcaa
    10261 caagggcaag gaacgcagtt acttcatgaa attgcgctga tgttgccgga gcttctggag
    10321 cgttggattg aacgcgtatg accgatttac acaccgatgt agaacgctac ctacgttatc
    10381 tgagcgtgga gcgccagctt agcccgataa ccctgcttaa ctaccagcgt cagcttgagg
    10441 cgatcatcaa ttttgccagc gaaaacggcc tgcaaagctg gcagcaatgt gatgtgacga
    10501 tggtgcgcaa ttttgctgta cgcagtcgcc gtaaagggct gggagcagca agtctggcgt
    10561 tacggctttc tgcgctacgt agcttttttg actggctggt cagccagaac gaactcaaag
    10621 ctaacccggc gaaaggtgtt tcggcaccga aagcgccgcg tcatctgccg aaaaatatcg
    10681 acgtcgacga tatgaatcgg ctgctggata ttgatatcaa cgatcccctc gctgtacgcg
    10741 accgtgcaat gctggaagtg atgtacggcg ctggtctgcg tctttccgag ctggtggggc
    10801 tggatatcaa acacctcgac ctggagtctg gtgaagtgtg ggtaatgggg aaaggcagca
    10861 aagagcgccg cctgccgatt ggtcgcaacg ctgtggcgtg gattgagcac tggcttgatt
    10921 tgcgcgacct gtttggtagc gaagacgacg cgctttttct gtcgaaactg ggcaagcgta
    10981 tctccgcgcg taatgtgcag aaacgctttg ccgaatgggg cataaaacaa gggctgaata
    11041 atcacgttca cccacataaa ttacgtcact cgttcgctac gcatatgctg gagtcgagcg
    11101 gcgatcttcg tggtgtgcag gagctactgg gtcatgccaa cctctccacc acgcaaatct
    11161 atactcatct tgattttcaa caccttgcct cggtgtacga tgcggcgcat ccacgcgcca
    11221 aacgggggaa ataatgcgtt tttaccggcc tttggggcgc atctcggcgc tcacctttga
    11281 cctggatgat accctttacg ataaccgtcc ggtgattttg cgcaccgagc gagaggcgct
    11341 tacctttgtg caaaattatc atccggcgct gcgcagcttc cagaatgaag atctgcaacg
    11401 cctgcgccag gcggtacggg aagcggaacc cgagatttat cacgacgtga cgcgctggcg
    11461 ttttcgttcg attgaacaag cgatgctcga cgccgggctg agtgccgaag aagccagtgc
    11521 aggcgcacac gcagcaatga tcaactttgc caaatggcgc agccgaatcg acgtcccgca
    11581 gcaaactcac gacaccttaa aacagctggc gaagaaatgg ccgctggtgg cgatcaccaa
    11641 cggtaacgcc cagccggaac tgtttggttt gggggattat tttgagtttg tgctgcgcgc
    11701 tggcccgcac gggcgctcaa aaccgttcag cgatatgtac tttctggctg cggaaaaact
    11761 caacgtgccg atcggcgaga tcttacatgt tggggacgat ctcaccactg acgtgggtgg
    11821 ggcaattcgc agcggaatgc aggcctgttg gatcagaccg gaaaatggcg atctgatgca
    11881 aacctgggac agccgtttac tgccgcatct ggaaatttcc cggttggcat ctctgacctc
    11941 gctgatataa tcagcaaatc tgtatatata cccagctttt tggcggaggg cgttgcgctt
    12001 ctccgcccaa cctattttta cgcggcggtg ccaatggacg tttcttacct gctcgacagc
    12061 cttaatgaca aacagcgcga agcggtggcc gcgccacgca gcaaccttct ggtgctggcg
    12121 ggcgcgggca gtggtaagac gcgcgtactg gtgcatcgta tcgcctggct gatgagcgtg
    12181 gaaaactgct cgccatactc gattatggcg gtgacgttta ccaacaaagc ggcggcggag
    12241 atgcgtcatc gtatcgggca gctaatgggc accagccagg gcggcatgtg ggtcggcacc
    12301 ttccacgggc tggcgcaccg tctgctgcgt gcgcaccata tggacgccaa tctgccgcag
    12361 gattttcaga tcctcgacag cgaggaccag ctacgcctgc tcaaacgcct aatcaaggcg
    12421 atgaacctcg acgagaagca gtggccgccg cgccaggcaa tgtggtacat caacagccag
    12481 aaagatgaag gcctgcgtcc acatcatatt caaagctacg gtaatccggt ggagcagacc
    12541 tggcagaagg tgtatcaggc gtatcaggaa gcgtgtgacc gcgcgggcct ggtggacttc
    12601 gccgagctgc tgctgcgcgc tcacgagttg tggcttaaca agccgcatat cctgcaacac
    12661 taccgcgaac gttttaccaa tatcctggtg gacgaattcc aggataccaa caacattcag
    12721 tacgcgtgga tccgcctgct ggcgggcgac accggcaaag tgatgatcgt cggtgatgac
    12781 gaccagtcaa tctacggctg gcgcggggcg caggtggaga atattcagcg tttccttaat
    12841 gatttccccg gtgccgaaac tattcgtctg gagcaaaact accgctctac cagcaatatt
    12901 ctgagcgccg ctaacgccct gattgaaaac aataacgggc gtctgggtaa aaaactgtgg
    12961 accgatggcg cggacggtga gcctatttcc ctctattgcg cttttaacga actcgatgaa
    13021 gcgcgttttg tggttaaccg catcaaaacc tggcaggaca acggcggggc gcttgccgag
    13081 tgcgccattc tctaccgcag taacgcccag tcgcgtgtgc tggaagaagc actgttgcag
    13141 gcgagtatgc cgtaccgtat ttacggcggg atgcgcttct tcgaacgcca ggaaatcaaa
    13201 gatgcgctct cgtatctgcg cctgattgcc aaccgtaacg acgacgcggc ctttgagcgt
    13261 gtggtgaata cgccaacgcg gggtattggt gaccggacgc tggacgtggt acgtcagaca
    13321 tcgcgcgatc gccagttaac actctggcag gcatgtcgtg aactgttgca ggaaaaagcc
    13381 ctcgccggac gtgctgccag cgccttacag cggtttatgg aactgatcga cgccttagcg
    13441 caggaaactg ccgatatgcc gctgcatgta cagactgacc gggtaattaa agactccggc
    13501 ctgcgtacca tgtacgagca ggagaagggc gaaaaaggtc agacgcgtat cgaaaactta
    13561 gaggaactgg tgacggcaac gcgccagttc agctacaacg aagaagacga agatttaatg
    13621 ccgctgcagg cgttcctatc ccatgcggcg ctggaagcag gcgaagggca ggcggatacc
    13681 tggcaggatg cggtacaact gatgaccatg cactcggcga aaggtctgga gttcccgcag
    13741 gtgtttatcg tcggtatgga agagggcatg ttcccaagcc agatgtcgct ggatgaaggc
    13801 gggcgtctgg aagaagaacg ccgtctggcc tacgttggcg taacccgcgc gatgcagaaa
    13861 ctgacgctga cctacgcgga aactcgccgt ctgtatggca aagaggttta ccatcgcccg
    13921 tcgcgcttta ttggcgagct gccggaagag tgtgtggaag aggtgcgcct gcgcgccacg
    13981 gtaagccgcc cggtcagcca tcagcggatg ggtacgccga tggtcgagaa cgacagcggc
    14041 tacaagctcg gccagcgtgt acgccacgct aagtttggtg aaggcaccat cgtcaatatg
    14101 gaaggcagcg gtgaacatag ccgtttgcag gtggcattcc agggccaggg tattaaatgg
    14161 ctggtggcgg cttatgcccg gttggagacg gtgtgacgtt gcgggatgcg gtgcgccaca
    14221 ccgcattccg catcagcacc ttacttagcg cacttcttca catcaatatt ccagtcagca
    14281 ccagacgcaa cctgatgttt ctgcgcgaaa ttatccatat tcagcgccac ggaaacattc
    14341 aataagctgt tcagatacac catcggctgg ccttccggca catcgccgaa gcttgcgaca
    14401 tacggcattt tccctgcgta tttttgctgg gaaccttcgg aaatggtcac acacaacgtg
    14461 tcgttgagtt tgatttctgc ctgattcagc aactcgtcgc tgatattgct ccagacgttg
    14521 ccgtactgaa tatcgagaat cgggatattg cccttcactt caccttttgt tgcttttgct
    14581 ttctgataag aaagttcgac aacttttgct ggaagctctg gccccacctg ttcgaacgta
    14641 atcgccccgg aagccagacg tgcaccggtg taggcataca cgtcacgacc gtggaaggta
    14701 tatgactttt cagaaccttt caggcggtta gctttttcgt cgatttcccg gacgctatca
    14761 atacccagag tttgtgccac caaagtgagc gtaccgttat ctggtgaaac gaagtattga
    14821 ccgtttttgg ttttcagcac taccgattta cggtcagtgc ctacgcccgg atcgaccacg
    14881 ctaacaaaca ccgaaccttg cggccagtaa ctggcagtct gatacaggcg ataagcgcct
    14941 tcccagatgt tatacggtgg aatttcgtgt gttaaatcaa agattttaag attatggtca
    15001 acgccgaatg cgaccccttt catcgccgag acggcaccat ctttcaggct aaaatcagtt
    15061 tgtaaaatca aagcgttatc cgcataggcg gatgatgatc ccagacacgt taataaaaat
    15121 aacgttgcga gcgttttttt c
//
LOCUS       DAJVUN010000094        14891 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.094, whole genome shotgun sequence.
ACCESSION   DAJVUN010000094 DAJVUN010000000
VERSION     DAJVUN010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14891
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.094"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..412
                     /locus_tag="OQQ76_002457"
                     /pseudo
     CDS             1..412
                     /locus_tag="OQQ76_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            413..691
                     /locus_tag="OQQ76_002458"
                     /pseudo
     CDS             413..691
                     /locus_tag="OQQ76_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708453.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
     gene            complement(768..1115)
                     /gene="rplS"
                     /locus_tag="OQQ76_002459"
     CDS             complement(768..1115)
                     /gene="rplS"
                     /locus_tag="OQQ76_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HCS1968927.1"
                     /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE
                     RTGKAARIKERLN"
     gene            complement(1157..1924)
                     /gene="trmD"
                     /locus_tag="OQQ76_002460"
     CDS             complement(1157..1924)
                     /gene="trmD"
                     /locus_tag="OQQ76_002460"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HCS1968928.1"
                     /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD
                     RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
                     ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL
                     GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
                     RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
     gene            complement(1955..2503)
                     /gene="rimM"
                     /locus_tag="OQQ76_002461"
     CDS             complement(1955..2503)
                     /gene="rimM"
                     /locus_tag="OQQ76_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HCS1968929.1"
                     /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY
                     QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE
                     EGDYYWKDLMGCQVVTTEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
                     GQVIKKVDLTTRSIEVDWDPGF"
     gene            complement(2522..2770)
                     /gene="rpsP"
                     /locus_tag="OQQ76_002462"
     CDS             complement(2522..2770)
                     /gene="rpsP"
                     /locus_tag="OQQ76_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000256453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HCS1968930.1"
                     /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS
                     EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA"
     gene            complement(2907..4268)
                     /gene="ffh"
                     /locus_tag="OQQ76_002463"
     CDS             complement(2907..4268)
                     /gene="ffh"
                     /locus_tag="OQQ76_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HCS1968931.1"
                     /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA
                     LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV
                     VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
                     PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL
                     FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG
                     EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF
                     LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE
                     IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF
                     PGR"
     gene            4435..5226
                     /locus_tag="OQQ76_002464"
     CDS             4435..5226
                     /locus_tag="OQQ76_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HCS1968932.1"
                     /translation="MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVC
                     HAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI
                     NLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL
                     AFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWF
                     VYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS"
     gene            5247..6533
                     /locus_tag="OQQ76_002465"
     CDS             5247..6533
                     /locus_tag="OQQ76_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026171.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HCS1968933.1"
                     /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ
                     GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT
                     FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIK
                     TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGID
                     INDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAA
                     DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS
                     PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT
                     RVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE"
     gene            complement(6588..7181)
                     /gene="grpE"
                     /locus_tag="OQQ76_002466"
     CDS             complement(6588..7181)
                     /gene="grpE"
                     /locus_tag="OQQ76_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HCS1968934.1"
                     /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKI
                     ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL
                     DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV
                     ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA"
     gene            7304..8182
                     /gene="nadK"
                     /locus_tag="OQQ76_002467"
     CDS             7304..8182
                     /gene="nadK"
                     /locus_tag="OQQ76_002467"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HCS1968935.1"
                     /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIA
                     HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT
                     DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI
                     EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA
                     RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS
                     YFNTLSTKLGWSKKLF"
     gene            8268..9929
                     /gene="recN"
                     /locus_tag="OQQ76_002468"
     CDS             8268..9929
                     /gene="recN"
                     /locus_tag="OQQ76_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HCS1968936.1"
                     /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL
                     CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR
                     SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
                     ARYQLWHQSCRDLAHHQQLGQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA
                     NSGQLLTTSQNALALMAYGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ
                     IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ
                     QLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQ
                     FTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALATQVITARK
                     METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE
                     TDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA"
     gene            10078..10419
                     /gene="bamE"
                     /locus_tag="OQQ76_002469"
     CDS             10078..10419
                     /gene="bamE"
                     /locus_tag="OQQ76_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417107.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HCS1968937.1"
                     /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS
                     KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT
                     NIDNKPALSSN"
     gene            complement(10481..10771)
                     /locus_tag="OQQ76_002470"
     CDS             complement(10481..10771)
                     /locus_tag="OQQ76_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417108.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HCS1968938.1"
                     /translation="MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT
                     DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK"
     gene            complement(10761..11198)
                     /gene="ratA"
                     /locus_tag="OQQ76_002471"
     CDS             complement(10761..11198)
                     /gene="ratA"
                     /locus_tag="OQQ76_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010376629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin RatA"
                     /protein_id="HCS1968939.1"
                     /translation="MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP
                     GQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRI
                     EFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSAR"
     gene            11369..11851
                     /gene="smpB"
                     /locus_tag="OQQ76_002472"
     CDS             11369..11851
                     /gene="smpB"
                     /locus_tag="OQQ76_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HCS1968940.1"
                     /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL
                     RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG
                     RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKLHDKRSDIKEREWQVDKARIMKNAHR
                     "
     gene            12066..12428
                     /gene="ssrA"
                     /locus_tag="OQQ76_002473"
     tmRNA           12066..12428
                     /gene="ssrA"
                     /locus_tag="OQQ76_002473"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(12589..14891)
                     /locus_tag="OQQ76_002474"
                     /pseudo
     CDS             complement(12589..14891)
                     /locus_tag="OQQ76_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311542.2"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AIDA repeat-containing protein"
BASE COUNT         3650 a         3998 c         3490 g         3753 t
ORIGIN      
        1 acgttgatga acaattccga tgcccgaaaa acgtcggcgt tactatttct tgatggcgat
       61 aatttcaaat atatcaatga tacctggggt catgcgacgg gcgatagggt cttgattgaa
      121 atcgcaaaac ggttagctga atttggcggg ctgcgacata aagcataccg atgaattcgc
      181 tatggtgctc tatgatgtac agtcggaatc tgaagtgcaa cagatatgct cagcactgac
      241 acaaatcttt aatctcccgt ttgatcttca taatggccat cagaccacca tgacattaag
      301 cattggttac gcgatgacca ttgagcacgc ctctgcggaa aaattacaag agcttgccga
      361 tcacaatatg tatcaggcca aacaccagcg tgccgaaaag ctggtgagat agcaacagat
      421 ccaaaccatg gcagccaaat tggcctcgac agggctaaca catgcccgta tggatggaca
      481 caccgataac tatggtgaag acagttacaa cgaaggctta tcattgaaac gggcgaatgt
      541 cgtggccgat gcatgggcta ttggtggaca aattccacgc agcaatctca ccacacaggg
      601 tttaggaaaa aaatatccca tagccagtaa caagaccgcc cagggccgcg ccgagaaccg
      661 ccgcgtcgca gtggtgatta caacccctta aaacacgagc aaacagacaa aaaaagggcc
      721 agccaattgg ccagcccttc ttaacaggat gtcgcttaag cgaaatctta gttaagacgc
      781 tctttgatac gagcagcctt accagtacgc tcacgcaggt agtacagttt agctttacga
      841 acagcaccac gacgtttgac agaaatgctg tcaactaccg gagagtgagt ctggaagaca
      901 cgctcaacgc cttcgccgtt ggaaatttta cgaacagtga atgcagagtg cagaccgcgg
      961 ttacgaatag cgataaccac gccctcgaat gcctgcagac gttttttgga accttcaaca
     1021 acccatactt tcacttccac ggtatcaccc ggacggaagg aaggtacgtc ctgcttcatc
     1081 tgctcttgtt caagttgctt aataatgttg ctcataattt aatctcttat cctgggtaaa
     1141 ctgatatctc gggggcttac gccatcccat catgtttatg ttgctgttgt gcgtgttccg
     1201 ttttgaactc cgccagcaac cttgcttgct cttcagtcag agccaggttt tccagaagtt
     1261 caggtcttct aagccaggta cggcccagcg actgtttcaa acgccagcga cgtatctcgg
     1321 catggttgcc cgacagtaac actggcggaa cttccatccc ttctaacacc tcaggccgcg
     1381 tatagtgcgg gcaatccagc aatccttcag caaaggaatc ttccgttgcc gaggcttcat
     1441 gtcccagtac ccccggaata aaccgggaaa cggagtcaat cagcgtcatt gctggtaact
     1501 caccaccact gagaacgtaa tcgccgattg accattcttc gtcaatttcg gtttggatca
     1561 cgcgctcatc tataccttcg tagcgaccgc acaccagaat caatttttga ttcgttgcca
     1621 attcgctgac gcccgcttga tcaagcttgc gtccctgtgg tgacagataa atcacctttg
     1681 cgccttcacc cgccgcggct tttgctgcat gaatggcgtc ccgcaagggt tgcaccatca
     1741 ttaacatccc cggtccgccg ccgtaaggac gatcgtccac ggtacggtgc cggtcatgcg
     1801 tgaagtcgcg aggactccag ctctggatgc tcagcaggcc atttttaact gcccggccag
     1861 ttaccccgta atcggtaatt gcgcggaaca tttcaggaaa caggctaatt atgccaatcc
     1921 acatagcgcc gtcttttacc gtttatccgg tggtttaaaa accaggatcc caatctactt
     1981 cgattgaacg agtagtgaga tcgactttct tgataacctg cccatcgagg aacggtacga
     2041 gacgttcctt gataccaaac gcatctttca ggtttgcctt aatgacgaga acgtcattag
     2101 atccggtttc catcatatcg atgactttac cgagatcgta gccttcagtg gttactacct
     2161 ggcagcccat caggtctttc cagtagtagt caccctcttc aagctgaggc aactgcgatg
     2221 aatccacgac aatttcacaa ttcgtcagca ggttcgccgc atcacgatcg tcaacgcctt
     2281 tcagcttgat gatcatgtcc tgattgtggt gcttccagct ttccagctgg acttgctgcc
     2341 actgacccgc cttctggata aaccagggct gatagtcaaa aatgctttcg gcgtcttcgg
     2401 tggaagaaaa cactctgagc cacccacgaa taccgtaaga cgaacccatt tttcccaaaa
     2461 cgatgggatc aacaggtgct tgcgcggtga gttgtttgct catcatgacc accgtgacag
     2521 attaagctgc tttgtttact tctttgatca gcgcagcaac gcgatcagaa atagttgcgc
     2581 cctggccaac ccagtgagcg atgcgatcca gatccaggcg agtgccttct tctttttcgc
     2641 tagcgattgg gttgaagaaa ccaacgcgct cgatgaagcg accgttgcgt gcattacggc
     2701 tgtcagcgac aacaacctgg tagaacggac gctttttagc gccgtgacgt gctaaacgaa
     2761 tagttaccat aacatcctct tgtgtgaata aaacaacctg accccatcga ggaacggagt
     2821 ccggtgtcat attaaaagcc cgaaaatttt actgatttct ggagaaaatg caatcagcag
     2881 ttaataactc tgtcgcataa ggtcatttag cgaccaggaa atcccggcgg catcatcccc
     2941 ttcatgcttc tcatcatctt cgccattccg cccttcttca ttttcttcat catgcgctgc
     3001 atgtcgtcga actgtttcag aagacggtta acgtcctgca cctgcatacc gcaaccggca
     3061 gcaatacggc gtttacgcga acctttgatg atttctggct tagcgcgctc tttcatcgtc
     3121 atcgagttga tgatggcttc catacgcacc agcactttat cgtccatctg tgacttgacg
     3181 ttatccggga tctgccccat gcccggcagc ttgcccatca ggctggccat gccgcccata
     3241 tttttcatct ggcgcagctg ctcaagaaag tcgttgagat cgaagccgtc accttttttc
     3301 agcttgctgg ctaatttctc tgcctgcgcg cggtcaactt tgctttcgat atcttcgatc
     3361 agcgacagta cgtcgcccat gccgagaata cgcgacgcaa tgcggtccgg atggaacggc
     3421 tccagcgcct cagttttctc gccaacaccg aggaacttga tcggtttgcc agtgatgtga
     3481 cgaatagaga gcgccgcacc gccgcgggca tcgccgtcca ctttggtcaa cactacgccg
     3541 gtaagcggta acgcttcatt gaatgctttt gccgtattgg ccgcatcctg accggtcatg
     3601 gcgtcaacca caaacagggt ttcaaccggg ttaatcgacg catggacttg tttgatctcg
     3661 tccatcatcg cttcgtcaac gtgcagacga ccagcggtat ccaccagcag cacgtcgtag
     3721 aatttcagtt tggcttcttt cagcgccgcg ttaacgatat ctaccggctt ctgaccaaca
     3781 tcagaaggga agaaatcaac gcccacctgc tctgccagcg tctcaagctg tttgattgcc
     3841 gccgggcgat aaacgtcggc agaaaccacc agcactttct tcttgtgctt ctcgcgcagg
     3901 aacttaccga gtttaccaac gctggttgtt ttaccggcac cttgcaggcc cgccatcagc
     3961 acgaccgcag gcggttgcgc cgccaggttc agggtctggt tctcttcgcc catcgccgca
     4021 accagttcgt tacggacgat tttgacgaac tcctgccccg gcgtcaggct cttattaact
     4081 tcatgaccaa ccgctttctc ttttacgcga ttgataaact cacgcactac cggcagagcg
     4141 acatccgcct ccagcagcgc catgcgcact tcgcgcagcg tatcttttac gttgtcttca
     4201 gttaggcgtc cacggccact gatattgcgc agcgtgcgcg acaaacgatc ggttaaatta
     4261 tcaaacattg tctctcgcct ggggtggaaa cggttggccg caatcgcgac acatcatcag
     4321 tattttgccg cagtataaca tgaaggcgtc tttgttgtta tgcaacggtt ggagcagcgt
     4381 tcacctgacg ctatactgct tctctttctt attgctcaaa ctgtcgacat cactatgccc
     4441 gtttttgctc tgctcgcgct tgtcgcctac tccgtcagtc ttgcgctgat tgttcccggt
     4501 ctgctgcaaa aaaacggcgg ctggcggcgc atggctatta tttctgcggt cattgcgctg
     4561 gtctgccacg caatcgctct ggaagcccgc atcctgcccg acggtgatag cggacaaaac
     4621 ctcagcctgc tgaacgttgg ttcattggtc agtttgatga tctgtacggt aatgaccatt
     4681 gtggcttctc gcaatcgtgg ctggttgctg ctacccattg tctatgcctt tgcgcttatc
     4741 aacctagcgc tggcgacctt catgcccaat gaatacatca cccatctgga agcaacgcct
     4801 gggatgctgg tgcacattgg cttatcgctc ttttcctatg ccacgctaat tatcgccgcc
     4861 ctgtacgcgc tgcaactggc gtggattgat taccaactga agaacaagaa gctggcattt
     4921 aaccaggaaa tgccgccatt gatgagtatc gagcgtaaaa tgttccacat cacgcagatt
     4981 ggcgtggtgc tgctaacgct cacgctttgc actggcctgt tctacatgca caacctattt
     5041 agcatggaaa atatcgacaa ggctgtgctc tctatcgtgg cgtggtttgt ctatattgtg
     5101 ctgctgtggg gacattacca tgaaggatgg cgtggacgcc gcgtcgtctg gtttaacgtt
     5161 gcgggcgcgg taattctgac actggcctac ttcggcagcc gaattgtcca gcagttaatc
     5221 agctaaaccc agaaaaggag tttcccctgg aacacatttc tactactacg ttgatcatta
     5281 ttctgatcat catggtggtc atttcagcct atttttccgg gtccgaaacc ggaatgatga
     5341 ccctcaaccg ctatcgtctg cgacatatgg cgaaacaggg taatcgctcg gccaaacgcg
     5401 tcgaaaaatt gctgcgtaag ccagaccgcc tgataagcct ggtgttaatc ggcaataacc
     5461 tggtcaatat tcttgcctcc gcgctcggca ctattgttgg gatgcgtttg tacggcgatg
     5521 cgggcgtggc aattgctact ggtgtgctga cttttgtcgt actggtattt gctgaggtat
     5581 tgccgaaaac cattgccgcg ctgtacccgg aaaaagtcgc ttatccgagt agttttctgc
     5641 tggctccgct gcaaattttg atgatgccgc tggtctggtt gctgaatgct atcacccgta
     5701 tgctgatgcg catgatgggt atcaaaaccg atatcgtggt tagcggctct ttgagcaaag
     5761 aagagttgcg cactatcgtg cacgaatcac gctcacaaat ttcccgtcgc aatcaggata
     5821 tgctgctgtc ggtgctcgat ctggaaaaaa tgaccgttga tgacatcatg gtgccgcgca
     5881 gtgaaattat cggtattgat atcaacgatg actggaaatc gattctgcgc caactctccc
     5941 actcacctca cgggcgcatc gtgctctacc gtgattcgct ggacgacgcc atcagtatgc
     6001 tgcgagtacg tgaagcctgg cggttgatgt cggagaaaaa agagttcacc aaagaaacca
     6061 tgctgcgcgc cgcggacgag atctattttg tgccggaagg tacgccgctc agcacgcagt
     6121 tagtaaagtt tcagcgcaac aaaaagaaag tcggcctggt cgtcaacgag tatggagaca
     6181 ttcaggggct ggtgacggtt gaagatattc tggaagagat tgtcggcgat ttcactacgt
     6241 cgatgtcgcc aacacttgcc gaagaggtca cgccgcaaaa cgacggttcg gtgattatcg
     6301 atggcaccgc caacgtgcgg gaaatcaaca aagcctttaa ctggcatcta ccggaagatg
     6361 atgcccgcac ggttaatggc gtcattcttg aggcactgga agagatccct gtcgcaggca
     6421 cccgcgtgcg tattggcgag tacgatatag atattctcga cgtacaggac aatatgatta
     6481 agcaggtaaa agtttttcct gtgaaaccgc tgcgcgagag tgtggcggag taacgaaaac
     6541 ggccctgcat tcgcatgcag ggccgtgaat tattacgaaa acagaaatta cgcttttgct
     6601 ttcgctacag ttaccatcgc cgcacgaatc gtacgaccat tcagcgtata acccttctgc
     6661 ataatgccca gtacgttacc tggcgcaacg tcatcagatt ccaccattgc gatagcctga
     6721 tgcacattcg ggtccagcgg cacgttagtt tcggcgatca cttcaacacc aaacttacgc
     6781 acaacatcca gcatcgactt cagcgtcagc tcaatgcctt caaccatcgc agacatatcc
     6841 gggttagctt tatcagccac ttccagcgca cgatccaggc tatcaatcac cggcagcaat
     6901 tcgttgatga atttctccag cgcgaatttg tgggcttttt caatatccag ttcagtacgt
     6961 cgacgcaggt tttccatttc ggcttttaca cgcaaaatgc cgtcacgttc acgggtctgg
     7021 gcttcagcca gctgagcttc gagattcgca attttttcat cgcgcggatc cacctgctca
     7081 gcagaagctt ctggctcaac tgcctcaatc tcttcgtgct gatccatgat aatttcttcc
     7141 ggggcttgcc cctcaggcgt tttctgttct ttactactca tgaatttctc cgcgtttttt
     7201 tcgcattcat ctcgctaact tcgcttatta tggggatcag tttcagggtt tcaagggaag
     7261 cactcacatt gtcatcaatc ttcgcaacaa ggacctcgga aaaatgaata atcatttcaa
     7321 gtgtattggc attgtgggac acccacggca ccccactgca ctgacaacac atgaaatgct
     7381 ctaccgctgg ctgtgcacaa aaggttacga ggtcatcgtt gagcaacaaa tcgctcacga
     7441 actgcaactg aagaatgtga aaactggcac gctcgcggag attgggcaac tagctgatct
     7501 cgcggtagtc gttggtggcg acggtaatat gctgggcgcg gcacgcacac tcgcccgtta
     7561 cgatattaaa gttattggaa tcaaccgtgg caacctgggt ttcctgactg accttgaccc
     7621 cgataacgcc cagcaacagt tagccgatgt gctggaaggc cactacatca gcgagaaacg
     7681 ttttttgctg gaagcgcaag tctgtcagca agattgccag aaacgcatca gcaccgcgat
     7741 aaatgaagtg gtgcttcatc caggcaaagt ggcacatatg attgagttcg aagtgtatat
     7801 cgacgagatc tttgcgtttt ctcagcgatc tgatggacta attatttcga cgccaacagg
     7861 ctccaccgcc tattccctct ctgcaggcgg tcctattctg accccctctc tggatgcgat
     7921 taccctggtg cccatgttcc cgcatacgtt gtcagcacga ccactggtca taaacagcag
     7981 cagcacgatc cgtctgcgtt tttcgcatcg ccgtaacgac ctggaaatca gttgcgacag
     8041 ccagatagca ctgccgattc aggaaggtga agatgtcctg attcgtcgct gtgattacca
     8101 tctgaatctg attcatccga aagattacag ttatttcaac acattaagca ccaagctcgg
     8161 ctggtcaaaa aaattattct aattttacgc cagcctcttt actgtatata aaaccagttt
     8221 atactgtaca caataacagt aatggttttt catacaggaa aacgactatg ttggcacaac
     8281 tgaccatcag caactttgct atcgttcgtg agcttgagat tgattttcat agcggcatga
     8341 ccgtaataac tggcgagacc ggcgcgggta aatctattgc aatagatgcc ctcggtcttt
     8401 gtctcggtgg tcgcgctgaa gccgacatgg tgcgtaccgg cgctgctcgc gctgacctgt
     8461 gcgcccgttt ttctctgaaa gatacgccag cggctctgcg ctggctggaa gaaaatcagc
     8521 ttgaagacgg gcatgaatgt ttgcttcgtc gcgtgatcag cagcgatggt cgctcccgtg
     8581 gtttcatcaa cggtacagct gttcctctgt cacaactgcg cgaactgggt cagttgctga
     8641 ttcagatcca tggtcagcac gctcatcaat tactcaccaa acctgagcac caaaaattcc
     8701 tgcttgatgg ctatgccaat gaaacctctc tactgcagga aatgaccgca cgttatcagt
     8761 tgtggcatca aagctgccgt gacctcgcgc atcatcaaca gttaggtcag gaacgcgccg
     8821 cccgtgcgga actgctgcaa taccaattaa aagaacttaa cgaatttaat ccgcagcccg
     8881 gagagtttga acaaatcgac gaagagtaca aacgtctggc gaacagcggt caattgctga
     8941 ccaccagcca gaatgcattg gcattaatgg cctacggtga agacgcaaac ctgcaaagtc
     9001 agctttacac ggctaaacaa ctggtgagcg aattgattgg catggacagc aaactgtccg
     9061 gcgtacttga tatgctggaa gaagctacca tccagattgc tgaagccagc gatgaactgc
     9121 gccactactg cgatcgtctg gatctcgatc ccaaccgact atttgaactt gaacagcgca
     9181 tctcaaaaca gatttcgctg gcacgtaaac atcacgtcag ccctgaggca ttgccacagt
     9241 attaccagtc gctactggaa gaacagcagc aactggacga tcaggccgac tcacaagaaa
     9301 cgcttgcgct ggcggtaacg aaacatcatc agcaggcact ggaaatcgcg cgcgcattac
     9361 accaacaacg ccagcaatat gcagaagaac ttgcacagct gatcaccgac agtatgcatg
     9421 cgctctcaat gccgcatggg cagtttacga tcgatgttaa atttgacgag catcacctgg
     9481 gcgctgacgg tgccgatcgt attgagtttc gggtaaccac caacccaggt cagccaatgc
     9541 agcctattgc caaagtcgca tccggtggtg aattgtcccg catcgcactg gcaacccagg
     9601 tcatcacggc gcgtaaaatg gaaaccccgg cactgatttt tgatgaagtg gatgtaggga
     9661 ttagcggtcc aacagcggca gttgtcggca aactgctgcg tcaactcggc gaatcaactc
     9721 aggtgatgtg tgttacccac ctgccacaag tcgcgggatg tggtcatcaa cactattttg
     9781 tcagcaaaga aaccgatggt gcgatgacag aaacgcatat gcaatccctg aataaaaaag
     9841 cgcggttaca agagctggcg cgcctgcttg gtggcagtga agtcacacgt aatacactgg
     9901 cgaatgcgaa agaactgctt gcagcgtaaa cttttttcct gcttcacggt cagagtaaac
     9961 agcaaaacgc cgtaagaccg gaaagcaaaa ggttttaaag tgatgaaagg tctattatca
    10021 tcggcatatt acagatgagc cacgtactgc tcgggcccga aaaggaatca aatcactatg
    10081 cgctgtaaaa cgctgactgc tgcagcagca gtactattga tgttgaccgc aggctgttcc
    10141 actctggagc gagtggttta ccgtcctgac atcaaccagg ggaactatct gaccgctaac
    10201 gacgtatcca aaatacgtgt tggcatgacg caacaacaag ttgcgtacgc attgggtaca
    10261 ccgctgatgt ccgatccatt tggtacgaat acctggttct atgtcttccg ccagcaacca
    10321 ggtcatgaag gtgtaacgca gcaaacgctg acgctgacct ttaacagtag cggtgtgttg
    10381 accaatattg ataacaaacc tgcgctgagt agtaactaat aataaagttg ctctcaaaga
    10441 cgttaaaaaa ggtgctcaat gagcaccttt tttctgtctg ttatttattc gctgattttt
    10501 ctgctcgttg cctgcgaagc tctttcggat cggcaatgag agggcgataa atctccaccc
    10561 gatcgccatc atgcacacta tcgcttagtt ttgccggacg gctgtaaatg ccgactttgt
    10621 ttttagttaa atcgatatcg gtacgcaatt ccagcaagcc actggcgcga atagcttctt
    10681 caaccgtcgc gccctcctgc agcgtcacgc gctgcaggta ctgcttctca ggtagcgcat
    10741 aagccacctc aacggcaatt ttacctggca ctgtaaacct ctttcgcacg aaccgtaaaa
    10801 gcctggacca tattagacgc cagctcttta aacacgcgac caaaggcgag ttcaatcaac
    10861 ttattggtaa actcaaagtc gagatgaaac tcgatacgac acgcctcctg gctcagcggc
    10921 gtaaacttcc atccaccaat caatttcttg aacggcccat ccaccagatt cataagaata
    10981 ctttggttac tggtcaactg gttgcgggta gtaaacgttt tgctgatccc agccttagag
    11041 acatctaccg ccgcagtcat ctgcccagga gtggactcca gaatccgact tccggtacaa
    11101 cccggcaaaa actgaggata agactgaacg tcattcacta actgatacat ttgctccgcg
    11161 ctgtagggta ccagtgcggt ccggctaatc tgaggcataa ctatttccat caacaaaaat
    11221 ccaacaaata atatcattta tcctgctgta aaaaaaacgc tatcccggcg ctgggtaaca
    11281 tcgggttcat gctaagatag agccttgtcc cccgcaggat tgatatgggg tgttttcgat
    11341 ttcagattac cgatgattca cgacgcttat gacgaagaaa aaagcacata aacctggttc
    11401 agcgaccatc gcgcttaaca agcgcgcccg tcacgaatac tttatcgaag aagagttcga
    11461 agcgggactt gccctgcaag gctgggaagt taaatccctg cgcgcaggaa aagccaatat
    11521 cagcgacagc tacgtccttc tgcgtgacgg agaggcattt ctgtttggcg ctaacatcac
    11581 gccaatggcc gtggcctcca cgcatgtggt gtgcgatcct acccgtaccc gcaagttact
    11641 tctcaaccag cgcgaactgg actcattgta cggtcgcgtc aatcgagaag gctataccgt
    11701 agtggcgctc tccctgtact ggaaaaatgc ctggtgcaaa gtgaaaatcg gcgtcgccaa
    11761 aggtaaaaaa ctgcacgata aacgttcaga tatcaaagaa cgcgaatggc aggtggataa
    11821 agcacgtatc atgaaaaacg cccaccgtta aacctgcact ccaattattg accagttcct
    11881 caccgcgcct ccctctccgg cggcgcgaat gaacatctta ttggctatca catccgacac
    11941 aaatgttgcc atcccattgc ttaatcgaat aaaaatcagg ctacatgggt gctaaatctt
    12001 taacgataac gccattgagg ctggtcatgg cgctcataaa tctggtatac ttgccgttac
    12061 acattggggc tgattctgga ttcgacggga tttgcgaaac ccaaggtgca tgccgagggg
    12121 cggttggcct cgtaaaaagc cgcaaaaaat agtcgcaaac gacgaaaact acgctttagc
    12181 agcttaataa cctgcttaga gccctctctc cctagcctcc gctcttagga cggggatcaa
    12241 gagaggtcaa acccaaaaga gatcgcgtgg aagccctgcc tggggttgaa gcgttaaaac
    12301 ttaatcaggc tagtttgtta gtggcgtgtc cgtccgcagc tggcaagcga atgtaaagac
    12361 tgactaagca tgtagtaccg aggacgtagg aatttcggac gcgggttcaa ctcccgccag
    12421 ctccaccaat catgattgga cggtataagg acaacaccaa taaaaacagg aagttagcag
    12481 tctcagcagg acaccgacca gacggtgaag agacataaaa ggatacgcaa aggagccgcg
    12541 gctcctggtg acatgaaagc ccacagatgt gggctttttc gttgatggtc agaacgacca
    12601 gttcacacca gctaccccgt tccacgggga ttccacaccg gcaccatggc tataccccac
    12661 cccaagatgc ccgcttaacg tactgctgaa tgaggcttta atacctgcct ggtatattcc
    12721 acgtctgccc gacaaatcat tgacgaaatt accgtcacta ttcactttca cccggttatc
    12781 atcgacaaat tctttgcgca cagccgcctt cagccacggc tcaacttcca taccgttccc
    12841 cagacgcatg ttgtaactca gcgttgcacc cagttcacga tataaactgc gggtatcgac
    12901 tgatttcgat tccatgccat tggataaatg atattcaggg ttatcagcgg tgaacccccg
    12961 ttaacgatgc atacggcgtc aggttccagt taccatcggt aaatcgcatc ccggtttcaa
    13021 tgtgaccgcc cagcccgttg ctgcgataac tgccgttggc ggctccaccg ctgccaaccg
    13081 tggagtcgcg agcttcggta cctgctaata ccaataaatt accgccattt tccagcaaca
    13141 tattggtcgc taaattgccg gaaatggaaa aagtgccgta ctggtgagta ccgctgattt
    13201 aaataccgtt agccgtgctc gtctggagag cggcaccgct gttctggacg atatctgtcg
    13261 ctttgccatt atcgttaact gtcagcgtac cgccttcatt gatctttgtt tttattgcct
    13321 ctccgttagc tgaaactgtt tgtattccgc cgtcgttaat cgttgtctca ttcgccaccc
    13381 cctcgacgat ttgttcgccg ccggtgagcg tcgtgcctgt cgcagtggct tttgttttga
    13441 cgatctcccg tccgcccgta ttgacctgtg ttttgtcaga agaggtgtct gactccacgg
    13501 ttaacacgcc gccatttgcc agcaggatat tgttcgccgc accctgctcg atgctgaacg
    13561 cgacgccatc cgcgcgtgtt cctgtgaccc gcgtcgccct ggtggttgca accaaagcgc
    13621 cctggctact ctgctgtatc tccgttgcgc tgcctttctc ccgcacatcg agtgtgccgc
    13681 cgtcattaag caccgagttt tcagccagac cgccctcatt aactacctgt gaacccccat
    13741 taataatgga accttccgct gtcccgtttg ccataatttg ttgtaggcca gagacgatat
    13801 cggtattgat tgccttacca taattctgaa cggtttgcgt gccaccattg atgtgtgttt
    13861 tctctgttga cccaccatca acaatttgtt caccactttc gatatttgcc tcagtggcta
    13921 atccatatac cgtttgcttg ccacctttga tatttgcttt atcagaagtg gcactggcat
    13981 atattgtttg ggtgccagca ctattgagta cagtgccaac atcttttcca taaacatcca
    14041 ttttgccgtt ggcattaata atcgtatcaa ctgcccggga accagtgacg actgttaatg
    14101 agccagcgtt ttccagcact acatttttag cttctgaatt cctgatgtag aaagcatcac
    14161 cataactgtt ggttcctttg ataagggttc cggaagttgt ggaagcaatt aatgcgccgc
    14221 cggattgttg ctcaacatgc ttagcctcac caccgtcctg aacctccaga acgccaccat
    14281 tattaagtct ggtggtatct gttttagcct ccttctggac aatcagctta ccgccagcat
    14341 caacggtagt atttttcgcc gaggttttag ccactaccgt cagttcgccg gtattttcca
    14401 gcacaacata attagcctcc cctccgggta atagtgaagt gagagagctt gttgtatcct
    14461 tcgatatcag tccctgcgcc cgtgttggca actaaagcac tgcccgtctc ctggttaacc
    14521 ccatgtgcta taccgccggt atagacaatc agcgagcctc cggcgctaat attgctgcca
    14581 gttgccgtac catctttctc aacaacctgc cggctcccgg tggaaatatt tgtcgtgtca
    14641 gctttcccgc cgctcttgat attttgtgtt ccgctgttga tattggtacc cgtggcaata
    14701 ccatgattat taatattctg tgtaccacca ttgattatgg tattggtcgc gtttccggta
    14761 acatccatta ccccgccgtt atctattcgg gtcgcatcag ctttagcatt cgttaaaact
    14821 gacattgttc ctttatcttt aataatcgtc ttatttgccg aaccatatgc gtttatgtct
    14881 aaatgaccac c
//
LOCUS       DAJVUN010000095        14836 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.095, whole genome shotgun sequence.
ACCESSION   DAJVUN010000095 DAJVUN010000000
VERSION     DAJVUN010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14836
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.095"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..309)
                     /gene="tuf"
                     /locus_tag="OQQ76_002475"
     CDS             complement(<1..309)
                     /gene="tuf"
                     /locus_tag="OQQ76_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1968941.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA
                     I"
     gene            complement(380..2494)
                     /gene="fusA"
                     /locus_tag="OQQ76_002476"
     CDS             complement(380..2494)
                     /gene="fusA"
                     /locus_tag="OQQ76_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HCS1968942.1"
                     /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKT
                     RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDTDQGVTFEYEDIPADMVELANEW
                     HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ
                     AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT
                     FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT
                     TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD
                     EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ
                     SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL
                     AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP
                     EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM
                     EFLKYDEAPSNVAQAVIEARGK"
     gene            complement(2591..3061)
                     /gene="rpsG"
                     /locus_tag="OQQ76_002477"
     CDS             complement(2591..3061)
                     /gene="rpsG"
                     /locus_tag="OQQ76_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HCS1968943.1"
                     /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY
                     SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW"
     gene            complement(3158..3532)
                     /gene="rpsL"
                     /locus_tag="OQQ76_002478"
     CDS             complement(3158..3532)
                     /gene="rpsL"
                     /locus_tag="OQQ76_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HCS1968944.1"
                     /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
                     DCSGVKDRKQARSKYGVKRPKA"
     gene            complement(3658..3945)
                     /gene="tusB"
                     /locus_tag="OQQ76_002479"
     CDS             complement(3658..3945)
                     /gene="tusB"
                     /locus_tag="OQQ76_002479"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HCS1968945.1"
                     /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL
                     ESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYTDFVRLTVKHSSQMAW"
     gene            complement(3953..4312)
                     /gene="tusC"
                     /locus_tag="OQQ76_002480"
     CDS             complement(3953..4312)
                     /gene="tusC"
                     /locus_tag="OQQ76_002480"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HCS1968946.1"
                     /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV
                     FQLLSGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE
                     ADALRRELANYDVILRF"
     gene            complement(4312..4698)
                     /gene="tusD"
                     /locus_tag="OQQ76_002481"
     CDS             complement(4312..4698)
                     /gene="tusD"
                     /locus_tag="OQQ76_002481"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HCS1968947.1"
                     /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIVEGHELSSVFFYRGGV
                     YNANQLTSPASDEFDLVRGWQQLNAQHGVALNICVAAALRRGIVDETEAGRLGLASSN
                     LQPGFTLSGLGALAEASLTCDRVVQF"
     gene            complement(4698..5420)
                     /locus_tag="OQQ76_002482"
     CDS             complement(4698..5420)
                     /locus_tag="OQQ76_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1968948.1"
                     /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG
                     SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT
                     RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMGTFVPPETPDVGSSVNFA
                     SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI
                     SKHTVYLYIRQFKSGDFQGQDK"
     gene            complement(5587..6399)
                     /gene="fkpA"
                     /locus_tag="OQQ76_002483"
     CDS             complement(5587..6399)
                     /gene="fkpA"
                     /locus_tag="OQQ76_002483"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1968949.1"
                     /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATTADSKAAFKND
                     DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL
                     QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA
                     PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV
                     IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK"
     gene            6620..6838
                     /locus_tag="OQQ76_002484"
     CDS             6620..6838
                     /locus_tag="OQQ76_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HCS1968950.1"
                     /translation="MQDLSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH
                     LRLLTEKLKASQPSNIASQAEETPPPHY"
     gene            complement(6887..7477)
                     /gene="slyD"
                     /locus_tag="OQQ76_002485"
     CDS             complement(6887..7477)
                     /gene="slyD"
                     /locus_tag="OQQ76_002485"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCS1968951.1"
                     /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG
                     LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ
                     GPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
                     DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH"
     gene            complement(7572..7772)
                     /locus_tag="OQQ76_002486"
     CDS             complement(7572..7772)
                     /locus_tag="OQQ76_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative metal-binding protein"
                     /protein_id="HCS1968952.1"
                     /translation="MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMRE
                     ADKEARDHVRKDEQVIGIFHPD"
     gene            complement(7782..9587)
                     /gene="kefB"
                     /locus_tag="OQQ76_002487"
     CDS             complement(7782..9587)
                     /gene="kefB"
                     /locus_tag="OQQ76_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefB"
                     /protein_id="HCS1968953.1"
                     /translation="MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGP
                     WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALL
                     AGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV
                     IPALALVPLLAGSADEHFDWMKIGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFT
                     AATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFI
                     SVGMSLNLGVLYTHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGG
                     EFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDE
                     KPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGD
                     ATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHELL
                     QAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHADT
                     VQISRAREARRELEEIFQREMQQERRQLDGWDEFE"
     gene            complement(9587..10138)
                     /gene="kefG"
                     /locus_tag="OQQ76_002488"
     CDS             complement(9587..10138)
                     /gene="kefG"
                     /locus_tag="OQQ76_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     ancillary protein KefG"
                     /protein_id="HCS1968954.1"
                     /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHY
                     PDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAG
                     KYWRNVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSA
                     KELANHARAYGDWLANPLSPGGR"
     gene            10269..12182
                     /locus_tag="OQQ76_002489"
     CDS             10269..12182
                     /locus_tag="OQQ76_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1968955.1"
                     /translation="MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL
                     ALLKNEISADGGSYTFPGSWQLAWVNQETPALSQAALEYVIDGDREYRQLEAQLHDAN
                     ERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH
                     IEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA
                     QSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADE
                     SPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPF
                     DGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIAR
                     LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ
                     EQLEQMLLEGQSN"
     gene            12182..13204
                     /locus_tag="OQQ76_002490"
     CDS             12182..13204
                     /locus_tag="OQQ76_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCS1968956.1"
                     /translation="MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFT
                     PYWQRLELPDGDFVDLAWSEAPAQARHKPRLVIFHGLEGSLNSPYAHGLVEAAQKRGW
                     LGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA
                     CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAY
                     PGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIH
                     AKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTY
                     LEAKSC"
     gene            13198..13416
                     /locus_tag="OQQ76_002491"
     CDS             13198..13416
                     /locus_tag="OQQ76_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HCS1968957.1"
                     /translation="MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKR
                     QLQCGEAVLVWSELHETVNIMPRSQFRE"
     gene            13470..14339
                     /locus_tag="OQQ76_002492"
     CDS             13470..14339
                     /locus_tag="OQQ76_002492"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HCS1968958.1"
                     /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSV
                     HRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYD
                     EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE
                     WIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFA
                     AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML
                     PLVQRLMEGKKIE"
     gene            complement(14394..14798)
                     /locus_tag="OQQ76_002493"
     CDS             complement(14394..14798)
                     /locus_tag="OQQ76_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HCS1968959.1"
                     /translation="MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAA
                     GGCSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVA
                     RAVDLSAEKYCSVALMLEKAVNITHSYEVVAA"
BASE COUNT         3655 a         4051 c         3654 g         3476 t
ORIGIN      
        1 gatcgcgccg tccatctgag cagcaccggt gatcatgttt ttaacatagt cggcgtgccc
       61 cgggcagtct acgtgtgcgt agtgacgggt cggggtgtca tattcaacgt gagaagtgtt
      121 gatggtgata ccacgagctt tttcttccgg cgcgttatcg atctggtcga atgcacgagc
      181 agcaccgccg taggttttag ccagtacggt ggtgattgca gcggtcagag tagttttacc
      241 gtggtcaacg tggccgatag taccaacgtt aacgtgcggt tttgtacgtt caaatttttc
      301 tttagacacg gctatattcc ttactatagt gctctcccct tcaggagaga gcacgggact
      361 ttggtattaa cccttaggct tatttaccac gggcttcaat tacggcctga gcaacgttac
      421 tcggcgcttc atcatacttc aggaattcca tagtgtatga tgcacgacct ttggtcagag
      481 aacgcagctg agttgcgtat ccgaacattt cagacagcgg tacttcagcg tggatcttaa
      541 cgccagtaac ttcagattcc tgacctttga gcataccacg acgacggctc aagtcaccga
      601 taacgtcacc ggtgttctct tccggagttt ctacttcaac cttcatgatc ggctcaagca
      661 gaactggttt cgctttctta aagccttctt taaaggcgat agaagcagcc agtttaaacg
      721 ccagttcaga ggagtcaacg tcatggtaag aaccgaagtg cagacgaata cccatgtcta
      781 ctaccgggta gcctgccagc ggacctgctt tcagctgttc ctggatacct ttatcaacgg
      841 ccgggatgta ttcgccaggg attacaccac ctttaatgtc gttgatgaac tcgtagcctt
      901 tcgggtttga acccggctcc agcgggtaca tgtcgataac aacatgacca tactgaccac
      961 gaccaccaga ctgtttcgcg tgtttacctt caacatcggt aactttctgg cggatagttt
     1021 cacggtaagc aacctgcggt ttacctacgt tcgcttcaac gttgaattca cgcttcatac
     1081 ggtcaacgat gatgtcgagg tgcagttcgc ccatacccgc gatgattgtc tggttagatt
     1141 cttcgtcagt ccatacacgg aaagacgggt cttctttagc cagacggccc agagccagac
     1201 ccattttttc ctggtcagct ttggttttcg gttcaactgc gatggagatt accggctcag
     1261 ggaattccat acgttccaga atgatcggcg catccgggtc acacagggtg tcaccagtgg
     1321 ttacgtcttt cagaccgata gcagcagcga tgtcgcccgc gcgaacttct ttgatctctt
     1381 cacgtttgtt agcgtgcatc tgaacgatac gaccgaaacg ctcacgtgca gctttcacgg
     1441 agttcagtac ggtatcacca gagttaacca caccggagta aacacggaag aaggtcaggt
     1501 taccaacaaa cgggtcggta gcgattttga acgccagtgc agagaacggc tcgtcatcac
     1561 ttgcgtgacg ttcagccgga gtgtctttac cgtcgtccag gataccgttg atcgcaggta
     1621 cgtcaaccgg ggatggcagg taatcaatta ccgcatccag catcgcctga acacctttgt
     1681 tcttgaacgc agaaccacag gttaccagga tgatttcgtt gttcagaacg cgctgacgca
     1741 gagcaccttt gatttctgct tcagtcagtt cttcaccacc caggtatttt tccatcagct
     1801 cttcagaagc ttcagctgcg gattcgatca ggttctggtg ccattcgtta gccagttcaa
     1861 ccatgtctgc cgggatatct tcgtattcga aggttacgcc ctggtcagtg tcgttccagt
     1921 taatagcttt cattttcacc aggtcaacaa caccggtgaa atgttcttca gcaccaatcg
     1981 ccagctgcag cggaaccgga ttcgcgccca gacgggtttt gatctggtta acaactttca
     2041 ggaagttcgc acccatgcgg tccattttgt taacgaacgc aatgcgcgga actttatatt
     2101 tgtttgcctg acgccatacg gtttcagact gcggctgaac accaccaact gcgcagtaaa
     2161 ccattaccgc accatcgaga acacgcatgg aacgttctac ttcgattgtg aagtcaacgt
     2221 gccccggggt gtcgatgatg ttgatgcgat gcggctcata ctgcttagcc ataccagacc
     2281 agaatgcagt agtcgcagcg gaagtgatgg taataccacg ttcctgctcc tgctccatcc
     2341 agtccatggt tgcagcgccg tcatgaactt cacctatttt atggtttaca ccggtgtaga
     2401 acagaatacg ttcggtagta gtggttttac cggcgtcgat gtgcgcactg ataccgatgt
     2461 tacggtagcg tgcgatgggt gttgtacgag ccatttgttt cctcgtttat cttttaggcg
     2521 ttcaatttaa gtagcccaaa gcgggctgct tactggaagc gcccgcctgg tgactaaaac
     2581 tccgaaggga ttaccaacgg tagtgtgcga acgccttgtt ggcttcggcc atacggtgaa
     2641 cgtcttcacg tttcttaact gcagtacctt tgttttctgc agcatcagaa agttcgttcg
     2701 ccaggcgcag agccatggat ttatcaccgc gtttacgagc agcttcaacg atccaacgca
     2761 ttgccagagc attacgacga accggacgga cttcaactgg tacctgataa gtagaaccac
     2821 caacgcggcg agacttaact tctacagtcg ggcgcacgtt ttcgagagct acttcgaatg
     2881 cttccagttc agatttacca gagcgctgag ccagggtctc cagcgcgctg tatacgatag
     2941 attcagcagt agatttttta ccatctacca tcaggatatt tacaaattta gccagcagtt
     3001 ctgatccgaa cttcggatcc ggcagaattt tacgctgacc aatgacgcga cgacgtggca
     3061 tggaaatact ccgttgttaa ttcaggattg tccaaaactc tacgagttta gtttgacatt
     3121 taagttaaaa cgtttggcct tacttaacgg agaaccatta agccttagga cgcttcacgc
     3181 catacttgga acgagcctgc ttacggtctt taacgccgga gcagtcaagc gcaccacgta
     3241 cggtgtggta acgaacaccc gggaggtctt taacacgacc gccacggatc aggatcacgg
     3301 agtgctcctg caggttgtga ccttcaccac cgatgtagga agtcacttcg aaaccgttag
     3361 tcagacgaac acggcatact ttacgcagcg cggagttcgg ttttttagga gtggtagtat
     3421 atacacgagt acatacgcca cgtttttgcg ggcatgcttc cagcgcaggc acgttgcttt
     3481 tcgcaacttt gcgagcacgt ggtttgcgta ccagctggtt aactgttgcc attaaatagc
     3541 tcctggtttt agcttttgct tcgtaaacac gtaataaaac gtcctcacac aatatgagga
     3601 cgccgaattt tagggcgatg ccgaaaaggt gtcaagaaat atacaacgat cccgccatca
     3661 ccaggccatc tggctggagt gcttaaccgt aagtctgacg aaatcagtat agtcaatggg
     3721 aatgatgtcg ttcgaaattt gaccagtcaa accgcgggca ataaggtctt cgttcagggc
     3781 atagacctta atgggggcat tacgcagact ttcaaggtag cggttaccgt caactgcggc
     3841 agttacgcca tcttgcaata atagcagttc gtctccttca ctgagcagac gcagcagcgc
     3901 agcaaaatcc gtcagccagg gtgaacgatg taacgtgtgc agcataaacg cctcaaaacc
     3961 tcaaaataac atcgtagttg gcgagttcgc ggcgtaaggc atctgcttcg agcggcgtgg
     4021 cttcgacaac aaagggtgtc tgcggatcta acccgcgttc gcgcagtgaa gccgcacaaa
     4081 cccagcactg ttcaatgtcg tacagaccca acaatttaaa agtggcaatg taatcacgcg
     4141 ccagcactgc atcgggcttt tgtcctgaca gcagctgaaa aacgccatca gcaataaaga
     4201 agacggccag atcgtcagtt aatgcggaag ttgccagtaa agcatctaaa ccttcccgac
     4261 cagcagctgt accatgaggt gcagtagaaa aaacaaacgc aattcgtttc atcagaactg
     4321 taccaccctg tcacaggtca gcgaggcttc cgccagcgcg ccaagtccgc ttaaggtaaa
     4381 tcccggctga aggtttgacg aagccagccc cagccttcct gcttcagttt catcgacgat
     4441 accgcggcgt aacgctgccg ctacgcagat attcagcgcc acaccatgtt gcgcattcaa
     4501 ctgttgccag ccgcgcacaa ggtcaaattc gtcacttgcc ggtgaggtca attggttagc
     4561 gttatagacc cctccccgat agaaaaagac gctgcttaac tcatggcctt ctactatcag
     4621 cgcctgcgca aactgaaaag cactactcgc ctgttgcgta ccgtatgctg gcccggtcac
     4681 cacgatggca aaacgcatta cttatcttgc ccctggaaat caccgctctt gaactggcgg
     4741 atgtagagat agacagtgtg tttggagatg ttcaggcggt cagcaacctg gttgatcgca
     4801 tctttaatat cgaagatccc tttctcgtag agattcagca cgatctgacg atttttggcg
     4861 ttattagaaa cattgcgatc ggcattcact tcttcgatgg tgaactccag cgtttgggta
     4921 accagatctt caacagaaga ggcaaagttg acgcttgaac cgacatccgg ggtttctggc
     4981 ggcacaaaag tgcccataat ctgcgagaag ggaacatcaa gattcatatt gatgcacagc
     5041 agaccaatta cacgctgttc gcggttacga atcgcgatag tcagggactt cattaatacg
     5101 ccgcttttgg cgcgagtaaa gtagcattta gaaacgctgc tatccgctcc cgtcatatcg
     5161 tgcagcatac gtagcgccag gtcagtaatt ggcgaaccaa tcttccggcc tgtatgttca
     5221 ccgttagcaa tgcgaatggc tgaacatttt agatcctgca aagagtgcaa aacgatttca
     5281 cagtgggagc caataagcat cgctaacccg tccaccaccg cttcgtagga tttcagaata
     5341 tcaaaatcgg tctggtcgaa aggacgttga tccagtaaat ccaactcact ggtttcgttg
     5401 gttaaaagcg acctggacat gaaaaaaaac actccttttc aggagcctgt cgttaacttt
     5461 tcagggcagg ctcattaatg atgcgggtaa ctaaattaat acagcggagg ttccgctttc
     5521 cagcactaat tatatccggc ctgtaataaa aaaaccgccg cctggtcagg cggcggttct
     5581 taatgcttat tttttagcag aatctgcggc tttcgcatca gcttccggct ttgcatcagc
     5641 cttcggtgct ggtttcacat ccagcagctc tacgtcaaac accagggtag aattcggtgg
     5701 gatccccgga acacccgctt tgccgtaagc cagttctggt ggaataacca gtttgatctt
     5761 accgcctttc ttgatgttct tcagaccttc tgtccaaccc gggataacac cgtccagacg
     5821 gaaagaaagc ggttcaccac gggtgtaaga gttgtcgaac tctttaccgt cgatcagcgt
     5881 acctttgtag ttcactacaa cagtatcgct gtctttcggt gcttcgcctt taccggcttc
     5941 tactacctga taaaccagac cagttgaaga ggttttcaca cctttctctt tggcaaattt
     6001 ctcgcggtac tctttacctt ttgcttcgtt atcagccgcg tctttttcca tcttcgcctg
     6061 agcagaagac ttcacgcgag cttcgaatgc ttgcagagtc tgttcgatct cttggtcgga
     6121 gagtttgctc ttatcagcaa atgcatcctg aacaccagcg atcagctgat ctttatccag
     6181 tttgatgccc agtttttctt gttctttaag agagttttcc atgtaacgac ccagcgaagc
     6241 acccagtgca taagctgatt tctgatcgtc atttttgaac gctgctttgc tgtcagcagt
     6301 tgtagcaggt tttgcagctt cagcagcaaa agtgattggt gcatgcaggg caacggccat
     6361 tgtggtcgcc agcagcgtta ctttaaacag tgatttcatc catatctcca ggatcggggc
     6421 atctcacccc agggttaact attatcagaa gggtactata aagcgttgtc gaacaaatct
     6481 acatacagac acgccctatt atcatctatt ttcagactct ttttgtttaa attagtttcg
     6541 atgaccgcga aatgagtgct gtctcgggca gcaaagttaa gtagaatccg cggcaaccat
     6601 tcgacaaaag aggtgaatca tgcaggattt atcattggaa gcacgcctgg cagagctgga
     6661 gagccgactg gcttttcagg aaatcaccat tgaagaactg aacgtcacgg tgaccgctca
     6721 tgaaatggag atggcgaaac tgcgcgatca tctgcgtctg ctgaccgaga agttaaaagc
     6781 cagccagccg tcgaacatcg cgtcgcaggc tgaagaaacg ccaccgccac attattgagg
     6841 cgtaaaaaaa gcggggattc cccgcttttt tgtcaccttt tcggtattag tggcaaccac
     6901 aaccgccgtt gcctttaccg ccacagcagc cttcgccacc gtgttcatga ccgtgatcgt
     6961 ggccatgacc gccgcagcaa ccgtcgtggt cgtgatcgtg gtgatgatcg tgcgcgccgt
     7021 gaacgtgacc atgagccagt tcttcttcgg tcgcttcacg aatcgccaca acctcaacgt
     7081 tgaatttcag gttctgaccg gccagcatgt ggttaccatc aaccactacg tgatcgtctt
     7141 caaccgcagt gatttcaacc ggtaccggac cctggtcggt ttcagccagg aaacgcatac
     7201 ctacctgcag ttcatcaacg cccataaata cgtctttagg aacacgttgc accaggtttt
     7261 cgtcgtactg accgtaagcg tcgttcgcgc caacagcgac atcaaatttg tcgccaactt
     7321 catgaccttc cagcgccgtt tccaggccag agatcaggga accgtgacca tgcaggtagt
     7381 ccagcggcgc actcaccgga gactcatcaa ccaacacacc gtcttctgta cgtacctgat
     7441 aggccaggct gaccaccagg tcttttgcta ctttcatgat atctcctgag catgggaaga
     7501 atagtggcgc agattgtagc ggaattctgc agccgtgtac tcactagctt aaaaaaactc
     7561 ggcgcatatc gctagtccgg atgaaaaatc ccgatcactt gctcatcttt gcgaacgtga
     7621 tcgcgggctt ctttgtctgc ttctcgcatc tgatgtccgc acttaacgca ttcaacaata
     7681 tcaatattat tttcgcgcca catcgccatt gaatcctgtg cctgacaggc cgggcatttt
     7741 gcgcccgcaa taaaacgttt tcggattgcc atctttaccc tctactcaaa ttcatcccag
     7801 ccgtccagct ggcgtcgttc ttgttgcatt tcacgctgga aaatctcttc cagttcgcgt
     7861 cgggcttccc tggcgcgaga aatttgtaca gtatcggcat gcattgggat gagctctcgc
     7921 agcatccgca tatccaggcg gcgaaaatgc agttgcgccc gctgcgcctg atgcggatgc
     7981 atcccaagcg tgaccaaagt cttgcgcccc agctctaacg cactggagaa tgtttcacgg
     8041 gaaaactgcg tcacccctgc ctgtaataac tcatgcgctt ccacacgtcc gcgcgctcgc
     8101 gcaagaatat gcaaatgcgg aaagtgctgc tggcatattt ccaccagctt catggtgtct
     8161 tccggctcgt tacaggtaat gacgatagac tcagcggcct ctgcacccgc agaacgtaat
     8221 agatcgacct gcgtggcgtc gccgtaataa actttgtagc catatttacg catcaggtta
     8281 acggcgctga tatcccgctc cagcacggta atgcgcattt tatttgccat cagcaaacga
     8341 ccaatcacct gaccaaaacg cccgaagccc acgacaatga cctggggttt atcatcgttg
     8401 acccacggtt tttcgtcttc ttcttccggt ccgttaaact ggcgggataa ccatttatcc
     8461 accagcttca tcagcaacgg cgtggtcatc atggaaagcg tcaccgtcac cagcaacagc
     8521 gccatctggt cgccctggaa taaacgttgt gaagaagcgg tagaaaagag gacaaaggca
     8581 aactcaccgc cctgactcaa cacgccagca aactgcatcc gctctgagct acgcacgcca
     8641 tacaatcgcg ccagcagata cagcacgaga attttcaccg ccaccagcac aaccacgctt
     8701 atcactaccc acaacagatg ggtataaagc accccgaggt tgagcgacat gccgacagag
     8761 ataaagaaca aaccgagcag caagcctttg aagggatcga tagccgtttc cagttcatgg
     8821 cgatattcac tttccgccag cagcacgccc gcaataaatg taccgagcgc catcgacagc
     8881 cccagcgcat ccataaacaa tgcggaaccc aacaccagca gcagcgtcgc ggcggtgaac
     8941 acttcccgca cgccagaagc tgcaataaag cggaataccg gacgcagtaa atagcgccca
     9001 ccaatcagca tgccgacaaa cgccagcacc ttcatgccga tcttcatcca gtcgaaatgt
     9061 tcgtctgccg accccgccaa caacggcact aacgccagtg ctgggatcac tgccagatcc
     9121 tgaaacagca gaaccgaaaa cccgagctgg ccggattcgc tgcgattcat ccctttctca
     9181 cgcatcaatt gcaacgccat tgcagttgaa gacatcgcaa ggccaatgcc accgaccacc
     9241 gccgcctgcc aggcgaaatc cgtcagcatc aataatcccg ccagcaacgc cgcgcttaac
     9301 agcacctgtg ccgcgcctac gccaaaaatc gaacgccgca gttgccaaag tttggaggga
     9361 ttcaactcaa ggccgatgat aaacatcagg aataccacgc cgagttccga aaagtggagg
     9421 atctcatcga cgtcgctaat aaaccccagc ccccacgggc caattgcaat ccctgccagc
     9481 aaatatccca acacagcgcc aatccccagc cgcgatgcca acggcaccgc agccaccgcc
     9541 gcgaagagaa acagcactcc tgcgagtaaa aaatcggaac cttccatcag cggcctcctg
     9601 gagacagcgg atttgccagc cagtcaccgt aggctctggc gtggttcgcc agctcctttg
     9661 cgctttgccg tctcgcccag taaataatga tgggacttaa ccaatgcatc cggcacatgc
     9721 ccgccgccag ttcaaagggg cgcagcacat cgctcatcgg gtagcgattc agcgcgtcat
     9781 aacggtaagc actttccggc tcgccggtgg taatcacgtt acgccagtac tttcccgcca
     9841 gttggtttcc tcccggcccg ctggcaaaac cacgacttaa tacccggtcc agccactctt
     9901 tcagtagcgc cgggcagcta taggtataaa gaggatgctg aaagacaatc acctcgtgct
     9961 cgcgcagtaa tgcctgctca cgggggatat caataaaaaa atcgggatag tgcgcgtaaa
    10021 ggtcgtgcac ggtaacattg ctgagctgcg tggccggttt aagcagtacc cggtttgcca
    10081 ccgagtcctg agattccgga tgggcataca gcagcaaaac tttcgctggc tgagacatca
    10141 tccccctccc ggtatggttt ttgtgtatag tcgctgtttt gggctaccat tgcgcccggt
    10201 gcggcagctc gcccatacat tacattatca taatgataag ttaacatagt ctgaacatac
    10261 ggcgccttat gattgttttc tcctcgttac aaattcgtcg cggcgtgcgc gtcctgctgg
    10321 ataatgccac cgccaccatc aaccctgggc agaaagtcgg cctggtgggt aaaaacggct
    10381 gtggtaaatc taccctgctg gcattgctga aaaatgaaat cagcgccgac ggcggcagct
    10441 acacctttcc gggaagctgg caactggcgt gggtgaatca ggaaacgccg gcgttatcgc
    10501 aagcggcgct ggaatatgtc attgacggcg accgtgaata tcgtcaactg gaagcgcagc
    10561 tgcacgacgc caacgaacgt aacgacgggc acgccattgc gaccattcat ggcaagctgg
    10621 atgctattga cgcatggagt attcgctccc gtgccgccag cctgctgcac ggcctcggtt
    10681 tcagcaatga acaactggag cgcccggtaa gtgatttctc cggtggctgg cgtatgcgtc
    10741 ttaaccttgc ccaggcgctg atttgccgtt cagacttgct gctgctcgac gaaccgacta
    10801 accacctcga tctcgatgcc gttatctggc tggaaaaatg gttgaagagc tatcaaggca
    10861 cgctgatcct gatctctcac gaccgcgact tcctcgatcc gatcgttgat aaaattattc
    10921 atatcgaaca acaaagcatg ttcgagtaca ccggcaacta cagttcgttt gaagtacagc
    10981 gcgccacccg tctggcgcag caacaagcga tgtatgaaag ccagcaggaa cgcgtggcac
    11041 atctgcaaag ttatatcgac cgtttccgtg ccaaagccac caaagcgaag caagcccaga
    11101 gccgcattaa gatgcttgag cgtatggagc tgattgcccc cgcgcacgtc gacaacccgt
    11161 tccgctttag cttccgcgcg ccggaaagcc tgccaaatcc gttactgaag atggaaaaag
    11221 tcagcgcggg ctatggcgat cgcattattc tcgactcgat taaactgaac ctggtgcccg
    11281 gctcgcgcat tggtctgtta ggccgcaacg gcgcgggtaa atcgacatta atcaaactgt
    11341 tagccggtga acttgcgcca gtcagcggtg aaattggtct ggcgaaaggg atcaagctcg
    11401 gctacttcgc ccagcatcaa cttgaatacc tgcgcgccga cgaatcacct attcaacatc
    11461 tggcacgttt agcgccgcag gagctggaac aaaaactgcg tgactacctc ggcggctttg
    11521 gtttccaggg cgataaagta accgaagaaa cgcgccgctt ctccggtggg gaaaaagccc
    11581 gcctggtgct ggcattaatt gtctggcagc gtccgaatct gctgctgctc gacgaaccga
    11641 ctaaccacct tgacctcgac atgcgtcagg cactcaccga agcattaatc gagtttgaag
    11701 gcgcgctggt tgtcgtttcg cacgaccgtc atttgctgcg ttccaccact gacgatctct
    11761 acctggttca cgatcgtaaa gtcgaaccgt tcgacggcga tctggaagat tatcaacagt
    11821 ggttgagcga cgtacaaaag caggaaaacc agaccgacga agcgccaaaa gagaacgcga
    11881 acagcgccca ggcacgtaaa gatcagaagc gtagggaagc ggagctgcgt gcgcaaaccc
    11941 agccgctgcg taaagagatt gcccgtctgg aaaaagagat ggagaagctg aacgcgcaac
    12001 tggcgcaggc ggaagagaaa ctcggcgaca gcgaactgta tgaccagagc cgtaaagcgg
    12061 agttgaccgc ctgcctgcaa cagcaagcca gcgccaaatc cggcctggaa gagtgcgaaa
    12121 tggcgtggct ggaagcccag gagcagcttg agcagatgct gctggaaggc caaagcaact
    12181 gatggcgcag ataacgacga ccgatgccaa tgaattcagc agcagtgctg aattcacccc
    12241 tatgcgcggc tttagcaatt gtcatctaca aactatgctg ccgcgtttgt ttcgtcgtca
    12301 ggtgaaattc accccgtact ggcagcggct ggagttgccc gacggcgatt ttgtcgatct
    12361 cgcgtggagt gaagcccctg cacaggctcg gcataaaccg cgtttagtga tatttcacgg
    12421 gctggaaggc agtctcaata gcccttacgc ccacggtctg gttgaggcgg cgcaaaagcg
    12481 cggctggctg ggcgtggtga tgcattttcg cggatgcagc ggtgaaccaa accgtatgca
    12541 ccgcatttac cattcgggcg aaaccgaaga cgccagttgg tttttacgct ggctgcaacg
    12601 cgaatttggt catgcgccaa cggctgccgt cggctattcg ctcggcggta atatgctggc
    12661 ctgtttgctg gcaaaggaag gcaatgatct cccggttgat gcggcggtga ttgtctctgc
    12721 gccgtttatg ctggaagcct gtagctatca tatggaaaag ggcttttccc gcgtttatca
    12781 gcgttacttg ctgaacctgt taaaagccaa tgccgcgcgc aagctggcag cctaccccgg
    12841 aacgctgccg attaatctcg cgcagttaaa atcggtacgt cgcatccgtg aatttgacga
    12901 tctaatcacc gccagaattc acggctacgc cgacgctatc gactattatc gtcagtgtag
    12961 cgccatgccg atgctgaacc ggatcgccaa accgacgctg attattcacg ccaaagacga
    13021 tccgtttatg gatcatcagg tgatcccgaa accggaaagt ctcccctcgc aggtggagta
    13081 tcaactgact gaacatggcg gtcatgttgg ctttattggc ggtacattac ttcatccgca
    13141 aatgtggctg gagtcacgca ttcctgactg gttaacaacg tatctggagg cgaaatcatg
    13201 ttgattccgt ggcaagacct ctcccccgaa acgctggaaa atttaattga aagctttgtg
    13261 ttacgtgaag gcaccgatta tggtgaacat gagcgtacac ttgaacagaa agtcgccgac
    13321 gtcaaacgcc agctacagtg cggagaagcg gtgctggtat ggtcggagct gcacgaaacg
    13381 gtcaatatta tgccgcgcag tcagtttcgc gaataacctg caaccgtcgg cggacgagat
    13441 aataatgata gctaagtcat ggagttacta tgtctgccaa acatccggtc attgcggtaa
    13501 caggatccag cggcgcgggg accaccacca ccagcctcgc gtttcgtaaa atattcgcgc
    13561 agttaaatct gcatgcagct gaggtggaag gcgacagtgt tcaccgttac acccgcccgg
    13621 aaatggacat ggcgatccgc aaagcgcgcg acgccgggcg gcatatcagc tacttcggcc
    13681 ccgaagcgaa cgacttcggc ctgctggaac aaaccttcat tgaatacggt cagagcggca
    13741 aagggaaatc tcgcaaatat ctgcatacct acgacgaagc cgtaccgtgg aatcaggtac
    13801 cgggaacatt caccccctgg caacctttac cagaacccac tgatgtactg ttttatgaag
    13861 gtttacacgg cggcgtagtc acgccacagc ataacgttgc gcagcatgtg gacttactgg
    13921 tcggcgtagt gcctatcgtt aaccttgagt ggattcaaaa actgatccgc gacaccagcg
    13981 agcgcgggca ctcacgagaa gcagtgatgg actcagtagt gcgttcaatg gaagactata
    14041 tcaactacat cacaccgcag ttttcccgca cccatcttaa cttccagcgc gttcccaccg
    14101 tcgacacttc aaacccgttc gcggcaaaag gtatcccgtc gctggatgaa agctttgtgg
    14161 tgatccattt tcgtaatctg gaagggatcg atttcccctg gctgctggcg atgttgcaag
    14221 gctcattcat ttcccacatc aatacgttag tggtaccggg cggcaaaatg ggtctggcaa
    14281 tggaattaat tatgctgccg ctggtgcaac gattgatgga aggaaagaaa atcgagtaac
    14341 tctgctatta cgccggataa aatactatcc ggcttcacaa cgggatagtt aaatcacgcg
    14401 gcaaccactt catacgagtg agtaatattc accgcttttt ccagcatcaa cgccactgaa
    14461 caatatttct cggcagagag atcaaccgca cgcgcaaccg ctgcgtcttt caggtcgcga
    14521 ccggtgacga taaaatgcag attaatgtgc gtaaacaggc gtggtgcctc ttcgcggcgt
    14581 tcagaggtca attttacttc acaatcgacc acatcctgac gccctttttg caggatcgaa
    14641 accacatcga tggcactgca accccccgcc gccatcaaca ccatttccat cggacttggt
    14701 gctttatcgc ctgagttgcc gtccattaaa atctgatgac cagaggcgga ttcgcccaga
    14761 aaagttaacc cttcgaccca cttcactcgc gcttgcattt ttgctactcc actgcgtcaa
    14821 ttttcctgac agagta
//
LOCUS       DAJVUN010000096        14836 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.096, whole genome shotgun sequence.
ACCESSION   DAJVUN010000096 DAJVUN010000000
VERSION     DAJVUN010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14836
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.096"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(312..524)
                     /gene="rpmE"
                     /locus_tag="OQQ76_002494"
     CDS             complement(312..524)
                     /gene="rpmE"
                     /locus_tag="OQQ76_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HCS1968960.1"
                     /translation="MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFF
                     TGKQRDVATGGRVDRFNKRFNIPGSK"
     gene            727..2925
                     /gene="priA"
                     /locus_tag="OQQ76_002495"
     CDS             727..2925
                     /gene="priA"
                     /locus_tag="OQQ76_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HCS1968961.1"
                     /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG
                     VVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI
                     LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF
                     NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS
                     AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL
                     HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR
                     YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVL
                     DLKGQKVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
                     YYTLHQAQQHLHCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPMFPGVPIS
                     RIDRDTTSRKGALEQQLAKVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
                     DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTYHPEHPLLQTLLYKGYDAFAEQALAE
                     RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWILGPVPALAPK
                     RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG"
     gene            3081..4106
                     /gene="cytR"
                     /locus_tag="OQQ76_002496"
     CDS             3081..4106
                     /gene="cytR"
                     /locus_tag="OQQ76_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CytR"
                     /protein_id="HCS1968962.1"
                     /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV
                     EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI
                     GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
                     LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD
                     PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS
                     IIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR
                     GSTRALP"
     gene            4198..5157
                     /gene="ftsN"
                     /locus_tag="OQQ76_002497"
     CDS             4198..5157
                     /gene="ftsN"
                     /locus_tag="OQQ76_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HCS1968963.1"
                     /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL
                     VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP
                     SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ
                     QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTT
                     AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK
                     ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG"
     gene            5250..5780
                     /gene="hslV"
                     /locus_tag="OQQ76_002498"
     CDS             5250..5780
                     /gene="hslV"
                     /locus_tag="OQQ76_002498"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HCS1968964.1"
                     /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI
                     AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET
                     ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC
                     IYTNHFHTIEELSYKA"
     gene            5790..7121
                     /gene="hslU"
                     /locus_tag="OQQ76_002499"
     CDS             5790..7121
                     /gene="hslU"
                     /locus_tag="OQQ76_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HCS1968965.1"
                     /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL
                     RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR
                     KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI
                     KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG
                     VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA
                     LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA
                     RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKRLDALVADEDLSRFIL"
     gene            7188..8114
                     /gene="menA"
                     /locus_tag="OQQ76_002500"
     CDS             7188..8114
                     /gene="menA"
                     /locus_tag="OQQ76_002500"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HCS1968966.1"
                     /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL
                     VALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIIT
                     VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV
                     FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV
                     RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP
                     VAMRPMLERTVKGALLTNLLFILGIFLSQWAA"
     gene            8207..8692
                     /gene="rraA"
                     /locus_tag="OQQ76_002501"
     CDS             8207..8692
                     /gene="rraA"
                     /locus_tag="OQQ76_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HCS1968967.1"
                     /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED
                     NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL
                     EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
                     E"
     gene            complement(8777..9022)
                     /gene="zapB"
                     /locus_tag="OQQ76_002502"
     CDS             complement(8777..9022)
                     /gene="zapB"
                     /locus_tag="OQQ76_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring assembly protein ZapB"
                     /protein_id="HCS1968968.1"
                     /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ
                     NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV"
     gene            9448..10293
                     /gene="glpF"
                     /locus_tag="OQQ76_002503"
     CDS             9448..10293
                     /gene="glpF"
                     /locus_tag="OQQ76_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol uptake facilitator protein GlpF"
                     /protein_id="HCS1968969.1"
                     /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGLWEI
                     SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAA
                     LVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
                     GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAG
                     WGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSE
                     QKASL"
     gene            10316..11824
                     /gene="glpK"
                     /locus_tag="OQQ76_002504"
     CDS             10316..11824
                     /gene="glpK"
                     /locus_tag="OQQ76_002504"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HCS1968970.1"
                     /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPG
                     WVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI
                     VWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGE
                     LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLGWDDKMLEVLDIPREMLPEV
                     RRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT
                     GEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA
                     TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV
                     LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL
                     AVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEKHDE"
     gene            11959..12969
                     /gene="glpX"
                     /locus_tag="OQQ76_002505"
     CDS             11959..12969
                     /gene="glpX"
                     /locus_tag="OQQ76_002505"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS1968971.1"
                     /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML
                     NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA
                     VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVT
                     ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA
                     AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD
                     NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH
                     IL"
     gene            13066..13812
                     /gene="fpr"
                     /locus_tag="OQQ76_002506"
     CDS             13066..13812
                     /gene="fpr"
                     /locus_tag="OQQ76_002506"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCS1968972.1"
                     /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID
                     GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE
                     VPDCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK
                     RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESAIGLPMNKETSHVMLCGNPQMV
                     RDTQQLLKETRQMTKHLRRRPGHMTAEHYW"
     gene            complement(13817..14245)
                     /gene="uspD"
                     /locus_tag="OQQ76_002507"
     CDS             complement(13817..14245)
                     /gene="uspD"
                     /locus_tag="OQQ76_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspD"
                     /protein_id="HCS1968973.1"
                     /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS
                     ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE
                     QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK"
     gene            complement(14272..14571)
                     /locus_tag="OQQ76_002508"
     CDS             complement(14272..14571)
                     /locus_tag="OQQ76_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 domain-containing protein"
                     /protein_id="HCS1968974.1"
                     /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM
                     TKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA"
BASE COUNT         3590 a         3804 c         3972 g         3470 t
ORIGIN      
        1 ggattgaccg gatggccgga cgtcaccccg ccggggcaca ctgaacaggc cacgccggtg
       61 ggggcaccaa tgcgcacccc ggctgaaccc tgaacaatgc taccgccata ctgcgtcatg
      121 tcgccctgac gcgccgccgg tttttcgctc atcgtaaaat ccttttgaaa taaataagaa
      181 ccagaagcct agcgccagtc aacaacagga aatgataatg agttaacacc ccggaatttt
      241 tcagaattta taaaaggcaa aattcaggca caaaaaaagc gccgtgcggc gcttttttcg
      301 gaaatccggt cttatttgct gcccgggatg ttgaaacgct tgttgaagcg gtcaacacgg
      361 ccaccggtag caacatcacg ctgtttgcca gtgaagaacg ggtggcactt gctgcacacg
      421 tcgaggttca ggtcatgacc aacagtggag cggattttca ttacgttacc gcaagagcag
      481 ctagcagtaa tttcttcgta tttcgggtga atatcttttt tcatgggaaa acctcggttt
      541 aaggccgcgt cgctcttcca gccctaacgc cagacaccac gcgatgttaa aagtatagct
      601 tcaatacgat catttcgtac gaaggcgcga aatcatacag aaattaacca gcgtatgcaa
      661 actgatccgc actcttctac ggcaatgtgt atactaaccc accgaatttc aagtcaggat
      721 gatgctatgc ccgttgccca cgttgccttg cccgttccgc ttcctcgtac ctttgactat
      781 ctgctgccag aaggcatgac ggttaaagcc gggtgtcgcg tgcgcgtgcc gtttggcaaa
      841 caacaggagc gcatcggggt tgtggtgtca gttagcgatg tcagtgagct gccgcttaac
      901 gagctgaaag cggtagtgga agtgctggac gttgagccgg tatttactca ctccgtctgg
      961 cggttactgc tctgggcggc agattactat catcatccga ttggcgatgt gctgtttcat
     1021 gccttgccga ttttactgcg ccaggggcgg cctgcggcga acgcgccgat gtggtactgg
     1081 tttgccactg aacaaggcca ggcggtggat ctgaacagcc tgaaacgctc ccccaagcaa
     1141 caacaggcgc tggcggcgtt acggcaaggc aaaatctggc gcgaccaggt cgccacgctc
     1201 gaatttaatg atgccgcgtt gcaggcgcta cgcaaaaaag gtctgtgtga tttagcaagt
     1261 gaaacaccag agtttagcga ctggcgaacg aactatgccg tttctggtga gcggttgcga
     1321 ttgaataccg aacaggccac cgccgttggc gcaattcata gcgcggcaga tactttttct
     1381 gcctggctgc tggcgggcgt taccggttcc ggtaaaacgg aggtttatct cagtgtacta
     1441 gaaaacgtgc tcgctcaggg caaacaggcg ctggtgatgg tgccggaaat cggcctgaca
     1501 ccgcaaacta tcgcccgttt tcgtgaacgt tttaatgccc ccgtggaagt tctgcattcc
     1561 ggcctgaacg acagcgagcg gctttcggcg tggttgaaag cgaaaaatgg cgaggcggcg
     1621 attgtgatcg gcacccgctc cgcgctgttt acgccgttta aaaatctcgg cgtgattgtc
     1681 attgatgaag agcacgacag ctcctacaag cagcaggaag gctggcgcta tcatgcccgc
     1741 gacctggcgg tgtatcgtgc gcacagcgag caaatcccga ttattcttgg ctccgcaacg
     1801 cccgcgctgg aaacgttatg caacgtccag cagaaaaaat accgcctgct gcgcctgacc
     1861 cgtcgggcag ggaatgcgcg tccggcaatt caacatgtgc tggatttaaa aggtcagaag
     1921 gtgcaggcag gtctggctcc ggcgttaatc acccgtatgc gccagcattt acaggccaac
     1981 aatcaggtta tcctctttct taatcgtcgg ggttttgcgc ctgcgctgct gtgccacgac
     2041 tgcggctgga tagccgaatg cccacgttgc gatcactact acacgctgca tcaggcgcaa
     2101 cagcatttgc actgtcacca ctgtgacagt cagcgtccgg tgccgcgcca gtgcccttcc
     2161 tgcggttcca cgcacctggt ccccgtgggg ctgggcaccg aacagcttga acagacgctt
     2221 gcgccgatgt tccccggcgt gcccatttca cgtatcgacc gcgataccac cagccgcaaa
     2281 ggggcgctgg aacagcaact ggcgaaagtg catcgcggcg gcgcgaggat tttgatcggc
     2341 acacaaatgc tggcgaaagg tcaccacttt ccggatgtga cgctggtggc gttactggat
     2401 gtggacggcg cgctgttttc tgccgatttt cgctcggcag aacgtttcgc ccagctttac
     2461 acccaggtcg ccggtcgtgc cgggcgtgcg ggtaaacagg gcgaagtggt gctgcaaacg
     2521 taccatccgg aacatcctct gttgcaaacg ttgctctata aaggctacga cgcctttgcc
     2581 gaacaggcgc tggctgagcg acgcatgatg cagctgccgc cgtggaccag ccatgtgatt
     2641 gtgcgtgcgg aagatcataa caatcagcac gcgccgctgt tcctgcaaca actgcgtaat
     2701 ctgatccttt ccagcccgct ggcagacgac aaactgtgga ttctcggccc ggttccggct
     2761 ctggcaccta agcgtggtgg ccgctggcgc tggcagatct tgttgcagca cccttcccgc
     2821 gtgcgcttgc aacacatcat tagtggtacg ctggcgctta ttaatacaat accggattcc
     2881 cgcaaggtga aatgggtgtt ggatgtcgat cccatcgaag gctaatgcgc aaacgttgcg
     2941 aggcggatcg aaaaattcaa tattcatcac acttttcatg aaaattctgt aaccgttttc
     3001 acgcgctatc tgctaaaaat gttgccgatg tgaagtaaac atggatgtag tacgcctgac
     3061 gtaccaggcg aggagtgagt gtgaaagcga agaagcagga aactgccgcg accatgaaag
     3121 acgttgccct caaggcaaaa gtctctacag cgactgtctc ccgagcatta atgaatcccg
     3181 ataaagtctc ccaggccacc cgtaatcggg ttgaaaaagc ggcccgggaa gtgggttatt
     3241 taccgcagcc tatggggcgc aacgtcaagc gtaatgaatc ccgcaccatt ctggtgattg
     3301 tcccggatat ctgcgatccc ttctttagcg aaattattcg cggtatcgaa gttacggcgg
     3361 caaatcacgg atatctggtg ctgattggcg actgtgcgca tcaaaatcag caggaaaaaa
     3421 cctttatcga tttgatcatc accaagcaaa ttgatggcat gttgctgctg ggttcaaggc
     3481 tgccgtttga tgccagcatt gaggaacagc gtaatctgcc gccgatggtg atggcgaacg
     3541 aatttgcacc ggaactggag ctgcctaccg ttcatatcga caatctgacc gccgcatttg
     3601 atgcagtaaa ttatttatat gagcaagggc ataaacggat tggctgtata gccggtcccg
     3661 aagagatgcc actgtgtcac taccgcctgc aaggctatgt tcaggcgctg cgtcgctgcg
     3721 gaattatggt tgatccacaa tacatcgccc gtggcgactt caccttcgaa gccggaagca
     3781 aagcaatgca acagctgctt gatcttccac aaccgcctac tgcagtcttc tgccatagcg
     3841 atgtgatggc gctcggcgca ctttctcagg caaaacgcca ggggctgaaa gtcccggaag
     3901 acctttccat aatcggtttt gataacatcg acctgacgca attttgtgat ccgccgctga
     3961 caaccatcgc gcagccgcgt tacgaaatcg gtcgggaagc tatgctgtta ttgcttgatc
     4021 aaatgcaggg gcaacacgtt ggcagtggct ctcgtttaat ggactgcgaa cttatcatcc
     4081 ggggatcaac acgcgcgtta ccttaaagta aacctttaag actgccgtga ctggtcaaag
     4141 gcccgccgct taagtaacat ggcgggctga cgaacgaata aatacagcga aacgatagtg
     4201 gcacaacgag attatgtacg ccgcagccaa ccggcacctt cgcggcgaaa aaagagcacc
     4261 tcacggaaaa agcaacgaaa tctgcctgcg gtttctcccg ctatggtcgc tattgctgcc
     4321 gccgttcttg tgacctttat cggtggtctg tacttcatta cgcatcacaa gaaagaagag
     4381 tccgagacgc tgcaaagcca gaaagtgacc ggaaacggac taccaccaaa accagaagaa
     4441 cgctggcgct acattaaaga gctggaaagt cgccagccgg gtgtgcgtgc gcccacagaa
     4501 ccttctgccg gtggtgaagt gaaaacgccg gagcaactga caccagaaca acgtcagctt
     4561 cttgaacaaa tgcaggctga tatgcgccag cagccaacgc agctggttga ggttccgtgg
     4621 aatgaacaga cgccggaaca gcgtcagcaa acgctacaac gccagcgtca ggcgcagcaa
     4681 ttagcggagc agcaacgcct ggctcagcag tcgcgtacga ctgaacaaag ctggcagcag
     4741 cagacgcgta cgtcgcaagc cgcgccggta caggcgcaac cgcgccagtc taaaccagct
     4801 tctactcagc agccgtacca ggatctgctg caaacccctg cgcacacgac cgcgcagtcg
     4861 aagccgcagc aagctgcgcc ggttgctcgt gccgctgacg cgccaaaacc gacggcggag
     4921 aaaaaagacg aacgccgctg gatggtgcag tgcggttcgt tcagaggcgc ggaacaggca
     4981 gagacggtac gtgctcagct ggcgttcgaa ggatttgact cgaaaatcac caccaacaat
     5041 ggctggaatc gtgtggtcat tggcccggtg aaaggcaaag agaacgcaga cagcaccctc
     5101 aatcggttga agatggcggg tcatacaaac tgcattcggc tcgccgccgg gggttgaaac
     5161 cctcaaaatc ccccccatct ataattgcat tatgccccgt acttttgtac ggggtttgta
     5221 ctctgtattc gtaaccaagg ggtcagctcg tgacaactat agtaagcgta cgccgtaacg
     5281 gccatgtggt catcgctggt gatggtcagg ccacgttggg caataccgta atgaaaggca
     5341 acgtgaaaaa ggtccgccgt ctgtacaacg acaaagtcat cgcgggcttt gcgggcggta
     5401 ctgcggatgc ttttacgctg ttcgaactgt ttgaacgtaa actggaaatg catcagggcc
     5461 atctggttaa agccgccgtt gagctggcaa aagactggcg taccgatcgc atgctgcgca
     5521 aacttgaagc actgctggca gtcgcggatg aaactgcatc gcttatcatc accggtaacg
     5581 gtgacgtggt gcagccagaa aacgatctta ttgctatcgg ctccggcggc ccttacgccc
     5641 aggctgcggc gcgcgcgctg ttagaaaaca ctgaacttag cgcccgtgaa attgctgaaa
     5701 aggcgttgga tattgcaggc gacatttgca tctataccaa ccatttccac accatcgaag
     5761 aattaagcta caaagcgtaa ggatctccca tgtctgaaat gaccccacgc gaaatcgtca
     5821 gcgaactgga taagcacatc atcggccagg acaacgccaa gcgttctgtg gcgattgctc
     5881 tgcgtaaccg ctggcgtcgc atgcagctca acgaagagct gcgccatgaa gtgaccccga
     5941 aaaatatcct gatgatcggc ccgaccggtg tcggtaaaac tgaaatcgcc cgtcgtctgg
     6001 ctaagctggc gaatgcgccg ttcatcaaag ttgaagcgac caaattcacc gaagtgggct
     6061 atgtcggtaa ggaagtggat tctattattc gcgatctgac cgatgccgcc gtgaaaatgg
     6121 tacgcgtcca ggctatcgag aaaaaccgtt atcgcgctga agaactggca gaagaacgta
     6181 ttctcgacgt gctgatccca cctgctaaaa acaactgggg acagaccgaa cagcagcagg
     6241 aaccgtccgc tgctcgtcag gcattccgca aaaaactgcg tgaaggccag cttgatgaca
     6301 aagaaatcga gatcgatctt gccgcagcac cgatgggcgt tgaaattatg gctcctccag
     6361 gcatggaaga gatgaccagc cagctgcagt ccatgttcca gaacctgggc ggccagaagc
     6421 aaaaagcgcg taagctgaaa atcaaagatg ccatgaagct gctgattgaa gaagaagcgg
     6481 cgaaactggt gaacccggaa gagctgaagc aagacgctat cgacgctgtt gagcagcacg
     6541 ggatcgtgtt tatcgacgaa atcgacaaaa tctgtaagcg cggcgagtct tccggtccgg
     6601 atgtttctcg tgaaggcgtt cagcgtgacc tgctgccgct ggtagaaggt tgcaccgttt
     6661 ccaccaaaca cgggatggtc aaaactgacc acattctgtt tatcgcttct ggcgcgttcc
     6721 agattgcgaa accgtctgac ctaatcccgg aactgcaagg tcgtctgcca atccgcgttg
     6781 aactgcaggc actgaccacc agcgacttcg agcgtattct gaccgagccg aatgcctcta
     6841 tcaccgtgca gtacaaagca ctgatggcga ctgaaggcgt aaatatcgag tttaccgact
     6901 ccggtattaa acgcatcgcg gaagcggcat ggcaggtgaa cgaatctacc gaaaacatcg
     6961 gtgctcgtcg tttacacact gttctggagc gtttaatgga agagatttcc tacgacgcca
     7021 gcgatttaag cggtcaaaat atcactattg acgcagatta tgtgagcaaa cgtctggatg
     7081 cgttggtggc agatgaagat ctgagccgtt ttatcctata atcgcgttca atcattttca
     7141 tcattgtttg atggggctga aaggccccat ttttattggc gcgtattatg actgaacaac
     7201 aaattagccg aactcaggcg tggctggaaa gtttacgacc taaaaccctc cccctcgcct
     7261 ttgctgcaat tatcgtcggg acggcgctgg catggtggca aggtcatttt gatccgctgg
     7321 tcgccctgct ggcactgatt accgccgggc tattacagat cctttctaac ctcgccaatg
     7381 attacggcga tgcggtaaaa ggcagcgata aacctgaccg cattgggccg ctacgcggca
     7441 tgcaaaaagg ggtcattacc cagcaagaga tgaaacgggc gctcattatt accgtcgtgc
     7501 tcatctgtct ctccgggctg gcactggttg cagtggcgtg ccatacgctg gctgattttg
     7561 tcggtttcct gattcttggc gggttgtcga tcattgccgc tatcacctac accgtgggca
     7621 atcgtcctta tggttatatc ggtctggggg atatttccgt actggttttc tttggctggt
     7681 taagcgtcat ggggagctgg tatttacagg ctcatacatt gattccggca ctgatccttc
     7741 cggcgaccgc atgcggcctg ctggcaacgg cagtactgaa cattaataac ctgcgtgata
     7801 tcaatagcga ccgcgaaaac ggcaaaaaca cgctggtggt gcgcttaggt gaagtgaacg
     7861 cgcgtcgtta tcatgcctgc ctgctgatgg gctctctggt atgtctggcg ctgtttaatc
     7921 tcttttcgct gcatagcctg tggggctggc tgttcctgct ggcggcaccg ttgctggtga
     7981 agcaagcccg ttatgtgatg cgggaaatgg acccggtggc gatgcgaccg atgctggaac
     8041 gcactgtcaa gggggcgtta ctgactaacc tgctgtttat tttagggata ttcctaagcc
     8101 agtgggcagc ataactgaca aatatcaatt aacaattgat gattttgcca acagcccaca
     8161 tagcgcgata tactgaaaat tctcgcagca actgaatgtt aagcctatga aatacgatac
     8221 ttccgagctt tgtgacatct atcaagaaga tgttaacgtc gtggaaccgc tgttctccaa
     8281 ctttggcgga cgggcgtcgt ttggcggaca aataatcacg gtaaaatgtt tcgaggacaa
     8341 cgggttgctg tacgatctgc tcgaacagaa tggccgtggt cgtgttcttg tcgtcgatgg
     8401 cggtggttct gttcgtcgcg cactggtcga tgctgaactg gcgcgtctgg cagtacaaaa
     8461 tgaatgggaa ggtctggtta tttacggcgc ggtgcgtcag gtagatgacc tggaagagtt
     8521 ggatatcggc atccaggcga tggcggcaat tccggttggt gccgctggcg aaggcattgg
     8581 cgaaagcgat gtccgcgtca attttggcgg tgtaaccttc ttctccggcg accatcttta
     8641 tgccgacaat accgggatta ttctttcaga agatccgctg gatattgaat gataagaaag
     8701 gcaccgcaag gtgccttttt tctgcgttac ctgttggcct acacagtaaa gaaattacgc
     8761 gaaagatgaa gcgtaatcag acctcttcca tgcgacccag cagggcctgc agacgttcct
     8821 gccagccgtt ctgctgttct ttcagatggt tgttctcacg ctccagctct tcgcgctgat
     8881 gctgggcatt ttgaacttcc tgcgacagtg agttgttttt ttctttcagc tcttcgattt
     8941 ccatctgcaa cagagtgatg gtatcaatcg cctgctgtac ttttgcttcc agtttctcaa
     9001 acacttctaa tgacattgtc atacctctcc tgaattgcaa ggcgttgatg gataaaaaat
     9061 cctcgtcccg attaccggtg acgccttaat aaatacgagc gcactttagt tagctccgat
     9121 tgtatgaagc cgcgccatcg ctgtccagcg gcacgccttg cagattacgg tttgccacac
     9181 ttttcatcct tctcctggtg acataatcca catcaatcga aaatgttaat aaatttgttg
     9241 cgcgaatgat ctaacaaaca tgcatcatgt acaatcagat ggaataaatg gcgcgataac
     9301 gctcatttta tgacgaagca cacacatttt aagttcgata tttctcgttt ttgctcgtta
     9361 acgataagtt tacagcatgc ctacaagcat cgtggaggtc cgtgactttc acgcatacaa
     9421 caaacattaa ctcttcagga tccgattatg agtcaaacat caaccttgaa aggccagtgc
     9481 attgctgaat tcctcggtac cgggttgttg atttttttcg gtgtgggttg cgttgcagca
     9541 ctaaaagtcg ctggtgcgtc ttttggtctg tgggaaatca gtgtcatttg gggactgggg
     9601 gtggcaatgg ctatctacct gaccgcaggg gtttccggcg cgcatcttaa tcccgctgtt
     9661 accattgcat tgtggctgtt tgcctgtttc gacaagcgca aagttattcc ttttatcgtt
     9721 tcacaagttg ccggcgcttt ctgtgctgcg gctttagttt acgggcttta ctacaattta
     9781 tttttcgact tcgagcagac tcatcacatt gttcgcggca gcgttgaaag tgttgatctg
     9841 gcaggcactt tctctactta ccctaatcct catatcaatt ttgtgcaggc tttcgcagtt
     9901 gagatggtga ttaccgctat tctgatgggg ctgatcctgg cgttaacgga cgatggcaac
     9961 ggtgtaccac gcggcccttt ggctcccttg ctgattggtc tactgattgc ggtcattggc
    10021 gcatctatgg gcccattgac gggttttgcc atgaacccag cgcgtgactt cggtccgaaa
    10081 gtctttgcct ggctggcggg ctggggcaat gtcgccttta ccggcggcag agacattcct
    10141 tacttcctgg tgccgctttt tggccctatc gttggcgcga ttgtaggtgc atttgcctac
    10201 cgcaaactga ttggtcgcca tttgccttgc gatatctgtg ttgtggaaga aaaggaaacc
    10261 acaactcctt cagaacaaaa agcttcgctg taatatgact acgggacaat taaacatgac
    10321 tgaaaaaaaa tatatcgttg cgctcgacca gggcaccacc agctcccgcg cggtcgtaat
    10381 ggatcacgat gccaatatca ttagcgtgtc gcagcgcgaa tttgagcaaa tctacccaaa
    10441 accaggttgg gtagaacacg acccaatgga aatctgggcc acccaaagct ccacgctggt
    10501 agaagtgctg gcgaaagccg atatcagttc cgatcaaatt gcagctatcg gtattacgaa
    10561 ccagcgtgaa accactattg tctgggaaaa agaaaccggc aagcctatct ataacgccat
    10621 tgtctggcag tgccgtcgta ccgcagaaat ctgcgagcat ttaaaacgtg acggtttaga
    10681 agattatatc cgcagcaata ccggtctggt gattgacccg tacttttctg gcaccaaagt
    10741 gaagtggatc ctcgaccatg tggaaggctc tcgcgagcgt gcacgtcgtg gtgaattgct
    10801 gtttggtacg gttgatacgt ggcttatctg gaaaatgact cagggccgtg tccatgtgac
    10861 cgattacacc aacgcctctc gtaccatgtt gttcaacatc cataccctag gctgggacga
    10921 caaaatgctg gaagtgctgg atattccgcg cgagatgctg ccagaagtgc gtcgttcttc
    10981 cgaagtatac ggtcagacta acattggcgg caaaggcggc acgcgtattc caatctccgg
    11041 gatcgccggt gaccagcagg ccgcgctgtt tggtcagttg tgcgtgaaag aagggatggc
    11101 gaagaacacc tatggcactg gctgctttat gctgatgaac actggcgaga aagcggtgaa
    11161 atcagaaaac ggcctgctga ccaccatcgc ctgtggcccg actggcgaag tgaactatgc
    11221 gttggaaggt gcggtgttta tggcaggcgc atccattcag tggctgcgcg atgagatgaa
    11281 gttgattaac gacgcctacg attccgaata tttcgccacc aaagtgcaaa acaccaatgg
    11341 tgtgtatgtg gttccggcat ttaccgggct gggtgcgccg tactgggacc cgtatgcgcg
    11401 cggggcgatt ttcggtctga ctcgtggggt gaacgctaac cacattatac gcgcgacgct
    11461 ggagtctatt gcttatcaga cgcgtgacgt gctggaagcg atgcaggccg actctggtat
    11521 ccgtctgcac gccctgcgcg tggatggtgg cgcagtagca aacaatttcc tgatgcagtt
    11581 ccagtccgat attctcggca cccgcgttga gcgcccggaa gtgcgcgaag tcaccgcatt
    11641 gggtgcggcc tatctcgcag gcctggcggt tggcttctgg cagaacctcg acgagctgca
    11701 agagaaagcg gtgattgagc gcgagttccg tccaggcatc gaaaccactg agcgtaatta
    11761 ccgttacgca ggctggaaaa aagcggtcaa acgcgcgatg gcgtgggaaa aacatgacga
    11821 gtaatgtaaa tgccggatga agcgtttatg ccgcatccgg tagtcctgaa acgtgcgggg
    11881 gcaaccccgc acacatcaat aatcccaccc ttcccctgtg ctacacttcg cgccattcct
    11941 tactgcttag agtttgctat gagacgagaa cttgccatcg aattttcccg cgtcaccgaa
    12001 tctgcggcgc tggctggcta caaatggtta ggacgcggcg ataaaaacac cgcggacggc
    12061 gcggcggtaa acgccatgcg tattatgctc aaccaggtca acattgacgg caccatcgtc
    12121 attggtgaag gtgaaatcga cgaagcaccg atgctctaca ttggtgaaaa agtcggtact
    12181 ggtcgcggcg acgcggtaga tattgctgtt gatccgattg aaggcacgcg catgacggcg
    12241 atgggccagg ctaacgcgct ggcggtgctg gcagtaggcg ataaaggctg cttcctcaat
    12301 gcgccggata tgtatatgga gaagctgatt gtcgggccgg gagccaaagg caccattgat
    12361 ctgaacctgc cgctggcgga taacctgcgc aatgtagcgg cggcgctcgg caaaccgttg
    12421 agcgaactga cggtaacgat tctagctaaa ccacgccacg atgccgttat cgctgaaatg
    12481 cagcaactcg gcgtacgcgt atttgctatt ccggatggcg acgttgcggc ctcaattctc
    12541 acctgtatgc cagacagcga agttgacgtg ctgtacggta ttggtggcgc gccggaaggc
    12601 gtagtttctg cggcggtgat ccgcgcatta gatggcgaca tgaacggtcg tctgctggcg
    12661 cgtcatgacg tcaaaggcga caacgaagag aatcgtcgca ttggcgagca ggagctggca
    12721 cgctgcaaag cgatgggcat cgaagccggt aaagtattgc gcctgggcga tatggcgcgc
    12781 agcgataacg tcatcttctc tgccaccggt attaccaaag gcgatctgct ggaaggcatt
    12841 agccgcaaag gcaatatcgc gactaccgaa acgctgctga tccgcggcaa gtcacgcacc
    12901 attcgccgca ttcagtccat ccactatctg gatcgcaaag acccggaaat gcaggtgcac
    12961 atcctctgat tggtttgatc gattgagcct tccagtcctt cgggactgga atttttttgt
    13021 tcggagaacg aagataaggc aagtcaatca aaacaggaga aaaacatggc tgattgggta
    13081 acaggcaaag tcactaaagt gcagaactgg accgacgccc tgtttagtct caccgttcac
    13141 gcccccgtgc ttccgtttac cgccgggcaa ttcaccaagc ttggccttga aatcgacggc
    13201 gaacgcgtcc agcgcgccta ctcctatgtt aactcgcccg ataatcccga tctggagttt
    13261 tacctggtca ccgtccccga tggcaaatta agcccacgat tggcggcact gaaaccaggc
    13321 gatgaagtgc aggtggttag cgaagcagct ggcttctttg ttctggatga agtaccagat
    13381 tgcgaaacgc tatggatgct ggcaaccggt acagcgattg gcccttattt atcgattctg
    13441 caactaggca aagatttaga tcgcttcaaa aatctggtcc tggttcacgc cgcacgttat
    13501 gccgccgact taagctattt gccactgatg caagaactgg aaaaacgcta cgaaggcaaa
    13561 ctgcgcattc agacggtggt cagtcgggaa acggcagcgg ggtcgctcac cggacggata
    13621 ccggcattaa ttgaaagtgg ggaactggaa agcgcgattg gcctgccgat gaataaagaa
    13681 accagccatg tgatgctgtg cggcaatcca cagatggtgc gcgatacaca acagttgctg
    13741 aaagagaccc ggcagatgac gaaacattta cgtcgccgac cgggccatat gacagcggag
    13801 cattactggt aagcggttac ttatcgataa acggcacgat gagcaaatcc gcactcatct
    13861 tattgatcat cccgcgatat gccggcatca aacggttgat aaatgagtga tgatgaccac
    13921 agacaaggag gtcgcactgc tctttttgca taatttccag cagtgtttcc ggcatttctc
    13981 cgcgttcaat acgcagtttt gtcttcggcc attgaatatt tttcgtcagt ttatacagct
    14041 tgttatccga cttattcttc aacaattgaa gaatatcttc tgttgcaggg aagtagatac
    14101 ccggatacaa ctcgcttaag ccatcatcaa tatgaattaa cgtcaggtga gcgtcattat
    14161 gtctggcgag ctccagagct ttattcacca gtaaggcatc ttcttcattc ccggaaattg
    14221 ccacgccaat gtgtttataa gccatgttta actccttcta aagcaactcc atcaagctaa
    14281 cgaacgcagt gataactcaa aaataatcat ctcggcctgg catgagaaag tgaaggccgc
    14341 atcaagctca acttgcccct ccagatcctt aatcttgtag gccacgctgg ccccttcatc
    14401 tgcagaggat gcagcggcgg caagctcttt cagtttggtc ataaaagact ctgcttcttc
    14461 gcgggtggca aaaaagcgcg aaaacttact ggtacagttg tcgttatcaa tcaccgtacc
    14521 gatatcaatc gcacatcctt tagtactgca tttatctacg acatctttca tagggcacct
    14581 ctgtatattc gcctctctgt cgattacgac ttaagaataa tgcgccgtta agggaagaac
    14641 aaacaagtaa tgatcttatg gattaccatt tttttgatat tgcttaaggt gaagagttca
    14701 gaaggatttt ccgagtattg tcatttgcat cgtggaaata acaatcccgg aaaaaaatag
    14761 cagtaagaga tatattaaag gttaattact tgatttattg tcggctttat acttcacatc
    14821 ctgagtatct ttacca
//
LOCUS       DAJVUN010000097        14715 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.097, whole genome shotgun sequence.
ACCESSION   DAJVUN010000097 DAJVUN010000000
VERSION     DAJVUN010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14715
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.097"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            3..155
                     /locus_tag="OQQ76_002509"
     CDS             3..155
                     /locus_tag="OQQ76_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015386348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968975.1"
                     /translation="MLLSPLTTYAKNYPCSGKKGGVSHCTSDGKFVCNDGTISKFKKI
                     CTKNSR"
     gene            416..1396
                     /locus_tag="OQQ76_002510"
                     /pseudo
     CDS             416..1396
                     /locus_tag="OQQ76_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(1501..2037)
                     /gene="rcdA"
                     /locus_tag="OQQ76_002511"
     CDS             complement(1501..2037)
                     /gene="rcdA"
                     /locus_tag="OQQ76_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RcdA"
                     /protein_id="HCS1968976.1"
                     /translation="MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGS
                     MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAQGACQAITDMIYSSQVATPDN
                     MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD
                     RKPLSREEILRMVERVAG"
     gene            2121..3329
                     /locus_tag="OQQ76_002512"
     CDS             2121..3329
                     /locus_tag="OQQ76_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1968977.1"
                     /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV
                     SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS
                     PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA
                     LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGIPFYRDIQLL
                     LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID
                     RYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP
                     DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD
                     TKTQTAMENS"
     gene            3329..4144
                     /gene="ybjI"
                     /locus_tag="OQQ76_002513"
     CDS             3329..4144
                     /gene="ybjI"
                     /locus_tag="OQQ76_002513"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase"
                     /protein_id="HCS1968978.1"
                     /translation="MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVAS
                     GNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFTTVVEHLLTRPEV
                     EIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQ
                     VQKALHEAIGDIMVPVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGN
                     DIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ"
     gene            4230..4514
                     /locus_tag="OQQ76_002514"
     CDS             4230..4514
                     /locus_tag="OQQ76_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1968979.1"
                     /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV
                     PQAVSVATVPQTVYVAPAPAPAYRPHPYARHLASVGEGMVIEHQIDDHHH"
     gene            complement(4555..5784)
                     /gene="mdfA"
                     /locus_tag="OQQ76_002515"
                     /pseudo
     CDS             complement(4555..5784)
                     /gene="mdfA"
                     /locus_tag="OQQ76_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdfA"
     gene            6069..6665
                     /gene="ybjG"
                     /locus_tag="OQQ76_002516"
     CDS             6069..6665
                     /gene="ybjG"
                     /locus_tag="OQQ76_002516"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1968980.1"
                     /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAQDLITVVPLLAAV
                     LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP
                     SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG
                     CLSAQIIWQAMGHKLYQRLQSWYRFCFALPIRKGWVRD"
     gene            6723..7481
                     /gene="deoR"
                     /locus_tag="OQQ76_002517"
     CDS             6723..7481
                     /gene="deoR"
                     /locus_tag="OQQ76_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor DeoR"
                     /protein_id="HCS1968981.1"
                     /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN
                     HSAPVVLLGGYIVLEPHSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT
                     TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT
                     LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA
                     RMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKLMY"
     gene            complement(7528..8730)
                     /gene="dacC"
                     /locus_tag="OQQ76_002518"
     CDS             complement(7528..8730)
                     /gene="dacC"
                     /locus_tag="OQQ76_002518"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HCS1968982.1"
                     /translation="MTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWIL
                     MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGN
                     PALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAK
                     KLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQP
                     NRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEK
                     LLTWGFRFFETVTPIKPDATFVTQRVWFGDKSELNLGAGEAGSVTIPRGQLKNLKASY
                     TLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGGFFGRMWDFVMMKFH
                     QWFGSWFS"
     gene            8976..9601
                     /gene="gstB"
                     /locus_tag="OQQ76_002519"
                     /pseudo
     CDS             8976..9601
                     /gene="gstB"
                     /locus_tag="OQQ76_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308945.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase GstB"
     gene            complement(9598..10713)
                     /gene="yliI"
                     /locus_tag="OQQ76_002520"
     CDS             complement(9598..10713)
                     /gene="yliI"
                     /locus_tag="OQQ76_002520"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose sugar dehydrogenase YliI"
                     /protein_id="HCS1968983.1"
                     /translation="MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLP
                     DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFVQSRRIWL
                     SYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYL
                     FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQG
                     MAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAG
                     TEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVIEDGRI
                     LTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN"
     gene            complement(10824..11207)
                     /gene="bssR"
                     /locus_tag="OQQ76_002521"
     CDS             complement(10824..11207)
                     /gene="bssR"
                     /locus_tag="OQQ76_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssR"
                     /protein_id="HCS1968984.1"
                     /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD
                     NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD
                     KLENCLMSLTLSIQSLQKHAMLEKA"
     gene            11420..12745
                     /gene="rimO"
                     /locus_tag="OQQ76_002522"
     CDS             11420..12745
                     /gene="rimO"
                     /locus_tag="OQQ76_002522"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HCS1968985.1"
                     /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD
                     ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG
                     PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP
                     SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGKPVKTS
                     MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK
                     RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF
                     KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE
                     EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV"
     gene            complement(12792..14120)
                     /locus_tag="OQQ76_002523"
     CDS             complement(12792..14120)
                     /locus_tag="OQQ76_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1968986.1"
                     /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID
                     TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD
                     ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYPYPVTHNRSLIFLLGLE
                     RFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF
                     AYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDG
                     GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNI
                     NDTFGHLLGDEVLMKVVKILKSQIPVDKGKIYRFGGDEFAVIYTGGTLEELLSILKEI
                     VHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ"
     gene            complement(14128..>14715)
                     /locus_tag="OQQ76_002524"
     CDS             complement(14128..>14715)
                     /locus_tag="OQQ76_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1968987.1"
                     /translation="GFINELGYQIIKTAMGEFRHFSQRASLKDDFLLHINVSPWQLNE
                     PHFHERFTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVRISIDDFGT
                     GLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIAEGVESEDV
                     ARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE"
BASE COUNT         3753 a         3715 c         3497 g         3750 t
ORIGIN      
        1 ctttgttatt aagcccacta actacctatg ctaaaaatta tccttgttct gggaaaaagg
       61 gaggtgtctc tcactgtacc tccgatggaa aatttgtttg caatgatgga actattagta
      121 aattcaaaaa aatctgtact aaaaactcac gataactttt gcttttatat ctgcgtctaa
      181 aataaaaatg agccgcaggt taaccgcaaa agttacatgc tcacatagca aaaagaatag
      241 ccaacttcat tatggcttca gtgagatgta tggtcgtagg atttcataca ttgacactgg
      301 ttatacatac agtaaaaata ctctctactg gagggcattt tttatggcag tacgaaaact
      361 caccactggg aaatggcttt gcgaatgtta ccccgccgga cgaagtgggc gtcgtgtgcg
      421 taaacaattc gccaccaaag gcgaagcact ggcttttgag cgccacacga tggaagaaac
      481 cgaagcaaag ccctggctgg gtgaatcagt gaatcgtcga acactgaaag acgtggttga
      541 gctatggttc aaactacatg gtaaatctct gacagctggg cagcatgtct atgacaaatt
      601 gctgttgatg gttgacgctc tgggcaatcc tcttgcaacc gatctcacct ctaaaatgtt
      661 tgcccactat cgagataaac gcctgacagg cgagatctac ttcagcgaga aatggaagaa
      721 aggagcaagc ccggtcacca ttaacctgga gcaaagctat ctaagtagtg tttttagcga
      781 actatcccgt ctgggcgaat ggtcgtatcc gaacccactg gagaacatgc gaaaattcac
      841 catcgcagaa aaagagatgg catggcttac ccatgagcag attgttgaat tgctggctga
      901 ttgcaaacgt caggacccaa ttctggcact ggtagttaag atatgcttaa gcacaggcgc
      961 acgctagcgt gaagccgtaa atcttacccg ctcacaggtg accaaatacc gaattacctt
     1021 tgtcagaacg aaggggaaga aaaacagaag catccctatc agtaaagagc tttacgaaga
     1081 gatcatggcg cttgatgggt tcaatttctt cacagactgc tattttcaat ttttatccgt
     1141 gatggaaaaa acgtctatcg tgctccctcg cggtcaactc acacacgttc tgcgccatac
     1201 gtttgcggcg cacttcatga tgtcgggtgg aaacattctg gccttacaaa aaattctcgg
     1261 acaccacgat ataaaaatga ctatgcgtta cgcacatctg gcaccggatc atctggaaac
     1321 ggcgctccgt ttcaatcctc tggcaacgct gccaagtggc gacaaagtgg cggcagcggt
     1381 tggcattacc ccgtaataac caccactgac caccaaccta acttattgtt tttaatctaa
     1441 cttattgttt tcattaaccc gtttacataa atgggttttt tgttatctaa aatttatcta
     1501 ctaccctgca accctctcaa ccatcctcaa aatctcctcg cgcgatagcg gcttacggtc
     1561 ggtgacaaaa tgcagcgtca tcccctcaat aaacgcatca agcgcgcggg cggttccggg
     1621 ttcaaaccat tgttcgagcg tttgctgact gcgctgcatc cagttttgca ttaccgtttt
     1681 taatagcggt tttcggctag ccagcgcgta gagctggtac atcagctcca tattatccgg
     1741 cgttgcaacc tgtgagctgt agatcatatc ggtgatagcc tggcatgcgc cttgagcatc
     1801 actaacatcg ctaaaaaatg cctgatattg ccgggacata atctcagtaa aactgctgaa
     1861 cgcctccagc aacaactcat caattcctga aaaatagtag gtcatcgatc ccaacggtac
     1921 cccggcaagg gtagcaattt tgcggtgcgt aacagcatgt attccgtaaa gtttcaccgc
     1981 ctccagcgtg gcctggataa ttttttctcg ccgttgcgga tcgttagcgc gacgcatgtc
     2041 atttcctctg tctgcaattg tgtacaaatg tacacaacct tgctaatgtt gtcttccctc
     2101 ttcttatttt gacgtgatct atgaccgtaa attcttcacg taatgcattg aaacgccgaa
     2161 cctgggcgct gtttatgttc ttctttttgc caggcctgtt aatggcgtcc tgggcaaccc
     2221 gtacgcctgc tatccgcgat attctctctg tctcgatcgc tgaaatgggc ggtgttctct
     2281 ttggtctgtc gatcggttcg atgagcggta ttctctgctc ggcgtggtta gtgaaacgct
     2341 ttgggacacg taatgtcatc ctggtcacga tgtcctgcgc attgatcggg atgatgatat
     2401 taagtctggc actctggctg acatcgcccc tgctctttgc cgttggtctc ggcgtctttg
     2461 gggcaagttt tggttctgcg gaagtggcga taaacgttga aggtgccgcc gttgagcgag
     2521 aaatgaataa aacggttttg ccgatgatgc acggttttta tagcctgggc acgctggcag
     2581 gcgctggtgt cgggatggca ctgacggcct ttggcgttcc ggcaacggtg cacattttat
     2641 tggcggcgct ggtaggtatc gcgcctattt atatcgccat tcaggcaatc cctgacggta
     2701 cgggcaaaaa tgctgccgat ggcacccagc atggcgaaaa aggcattcct ttttatcgcg
     2761 atatccagtt gctgttgatt ggtgttgtag tgctggcgat ggcctttgcc gaaggttctg
     2821 ccaacgactg gttaccctta ttaatggttg acggtcacgg ttttagccct acttccggct
     2881 cgctgattta tgccggtttt accctgggga tgaccgttgg acgcttcact ggcggttggt
     2941 tcatcgaccg ttacagtcgc gttgccgtgg ttcgggccag tgcactaatg ggggcgttgg
     3001 gtattgggct gattattttt gtcgatagcg cctgggtcgc tggggtgtct gttgtactct
     3061 ggggactggg tgcctcgctg ggcttcccgc tgaccatttc tgccgccagc gataccggcc
     3121 ccgatgcacc aacccgcgtc agtgtggtag caacgaccgg ttatctggct ttcctcgtcg
     3181 ggccgccgct gctgggctat ctcggcgaac attatggatt acgtagtgca atgctggttg
     3241 tactggcgct ggttattctc gcggctattg tcgcgaaagc cgtcgccaaa cccgatacca
     3301 aaacgcagac ggcgatggag aatagttgat gagcattaaa ttaattgcgg tagacatgga
     3361 tggtactttc ttaagcgatc aaaaaaccta taaccgtgag cggtttatgg ctcagtatca
     3421 gcaaatgaaa gcacaaggca ttcgctttgt ggtcgccagc gggaatcaat attatcagtt
     3481 gatctctttc ttccctgaaa ttgctaatga aattgccttt gtggctgaaa acggcggctg
     3541 ggtagtgagt gaaggcaaag atgtttttaa tggcgagctg tcgaaagatg cctttactac
     3601 tgtcgtggaa catttgctga cgcgcccgga agtggaaatt attgcctgcg gaaaaaatag
     3661 cgcctatacg ctcaaaaaat atgacgatgc catgaaaacg gtggcggaaa tgtattatca
     3721 ccgtctggaa tacgtcgata actttgacaa cttagaagat attttcttta agtttggcct
     3781 gaatctttcc gatgaactga ttccacaagt acaaaaagca ttacatgagg ccatcggcga
     3841 tattatggtg ccagtccaca ccggcaacgg cagcatcgat ctgattatcc ccggcgtaca
     3901 taaagccaat ggccttcgcc aactgcagaa attatgggga atagacgaca gcgaagtggt
     3961 ggtctttggc gatggcggta acgatattga gatgctgcgt caggcaggct ttagttttgc
     4021 aatggaaaat gccggcagcg cggtcgtcgc agcggcaaaa taccgggcag gctccaataa
     4081 ccgtgaaggc gtactggatg tgatcgataa agtgcttaaa cacgaagcgc catttgacca
     4141 ataaaaacgg cagcacgccc ggcaacacaa tacctgaatg aaggctgcat aattcgcaga
     4201 aattaacccg ctgcattatt tcaggcgaaa tgattatgaa aaattgtcta ctgttgggcg
     4261 cgcttttaat gggctttact ggtgtggcga tggcgcaaag tgtcaccgtc gatgtgccga
     4321 gtggatacaa agtggttgta gttcctgatt cagtcagcgt tccacaagcg gtcagcgtcg
     4381 cgactgtgcc gcaaaccgtc tatgtggctc ctgcgccagc tccggcttac cgcccgcatc
     4441 cttatgctcg ccatcttgcc agcgtaggtg aagggatggt tatcgaacac cagattgacg
     4501 accatcacca ttaattcgag aatgcctgat cgcacaaagc agtcaggcat ttttttaccc
     4561 ttcgtgagaa tttcccatct gtttatcttt taaaaagata accatcagcg acagccacaa
     4621 aattccgttg acaaggttga agagattaaa ctgtccgttg cccccgttca gccaggcatg
     4681 tttgctgatt tcaataccaa cggtaaagat cagcatttgc agcattccca tcgcagcaga
     4741 aaccgtacct ttactcatat cgctggcaaa cagggttaat cgcaccagtc ccgcattcgc
     4801 cagaccaata ccgaaagcat aaatacttaa cccggcagtc atccataaat acgcgtgcga
     4861 tgagataacc gttgccgcag cagcgaccaa cagaccaatc ataatcggcc agccgcccat
     4921 aattatcagc gaacgtacgg tgcggcgcga ggtcagacgc gctaacagca agttacccgc
     4981 aattaacgcc ccgaaaatag gcacttgcag caagccatat tcatagctgc tcaactgctc
     5041 gccggtaatg atgataatcg gcgactgggc gatccacgcc agcaatggca ggctaacgaa
     5101 tcccagcgcc agcgcccccg ccacaaagcg gccgttcttc agcaccagct tatagtcacg
     5161 accgagttct ttcagtgaca gtttctcgcc tatacgcgtg gcggtttcag gcatagctcg
     5221 ttgcagaccg aaaaaggaga tcgctgccaa tgcggcaaac aaaacaaaca tcccctccca
     5281 gggcagcaca tggatccacg ccgcgcccac cagcggacca agtagcggag caatcagcgc
     5341 cacgttcgcc atcagcgcgg tgatcttgat acaaaccgcc tcttcgaaag attcctgaat
     5401 tgcggcgtat cccacagcgc caatgaaaca gaggcttatg ccctgcaaga agcgcaacag
     5461 agtgaattgt tcaatgtttt gcgccagtaa tattgccaga caggtgatga taaaccacac
     5521 ccccccgcca gcatcaccgg acggcgacca atacgatccg acagcggccc caggagccat
     5581 tgtaaaaaca tcccgcctgc cagatatgcg gtcattgaag taggaaccca atcaatgccc
     5641 gcctgatatt gttccaccac ggccaacata ccgggttgaa tcatatctgc cgatataggt
     5701 tgaaaattcg taaagcacca gacagagagg gaaaagtaac gcctgacgtc caagcctggc
     5761 accggaagct aatttatttt gcatgcaatt tcttcgccaa taataatcgc gcagagttta
     5821 ataaaagcgc agctaacgag aaagcgaatt ttgtagccga aaccacggtt aagcacattc
     5881 ttacattatt gcgagtatag ctacgctttc tttaagtttt atttaaccta tgcccgttac
     5941 aatcacccac cgtaaacagg ccgcttgagg gaaataagac gatgccgctt tacccagttt
     6001 aacctgcact ttattctcaa cgacttgcct gtattggctc ccttttaatc actttgcgtc
     6061 gggaagttat gctggaaaat ttgaatctct ctctattctc tcttattaac gcgacgccag
     6121 actcggctcc gtggatgatc tcgttggcga tttttattgc tcaagatttg attaccgtgg
     6181 tgccgctgct ggccgcggtg ctttggttgt gggggcttac agcacaacgg caactggtga
     6241 taaaaatcgc tatcgcgctg gcggtcagcc tgtttgtgtc ctggacgatg ggacatcttt
     6301 ttccgcacga ccgacccttt gtcgaaaata tcggctataa cttcctgcat catgcggcgg
     6361 atgactcatt cccaagcgac cacggtacgg tgattttcac ctttgcactg gcatttttat
     6421 gctggcatcg cctgtggtcc ggctcacttt taatggtgct ggccgtcgtc attgcctggt
     6481 cgcgcgttta tcttggcgtc cactggccgc tggatatgct cggtggattg ctggcaggta
     6541 tgattggctg ccttagtgcc cagattatct ggcaagcgat ggggcataaa ctctatcaac
     6601 gtctgcaatc gtggtatcgc ttctgttttg cattaccgat ccgcaaaggc tgggtgcgtg
     6661 actgatctct gctaaaaagt gtagtattga gcggctcgct tcaataacta ttcagaggga
     6721 ttatggaaac acgtcgcgaa gagcgtatcg ggcagctgct gcaagaatta aaacgcagcg
     6781 ataagttaca tcttaaagac gccgccgccc tgcttggggt ttcggagatg acgattcgtc
     6841 gcgatctgaa caaccacagt gcgcccgtcg ttttgctcgg cggctatatt gttctggaac
     6901 cgcatagtgc cagccattac ctgttaagcg atcaaaaatc ccgcctggtg gaagaaaaac
     6961 gccgggcggc aaaactggct gcgacactgg tagaacccga tcagaccctc ttttttgact
     7021 gtggcaccac cacgccgtgg attattgaag cgattgataa tgaaatccct tttaccgccg
     7081 tttgttattc gctaaatacc tttctggcgc tgaaagagaa accccattgc cgcgcatttc
     7141 tgtgcggtgg tgaatttcac gccagcaacg ccattttcaa acccatcgat tttcagcaaa
     7201 cgttgaataa tttttgcccg gatatcgctt tttattccgc ggcgggcgtg catgtcagta
     7261 aaggcgctac ctgttttaat cttgaagagt tgccggtaaa acactgggcc atgtcgatgg
     7321 cgcaaaagca tgtgctggtt gtcgaccaca gtaaatttgg caaggtccgt ccggcgcgca
     7381 tgggtgacct gaaacgcttt gatattgtgg tgagtgattg ttgcccggaa gatgagtatg
     7441 tgaagtacgc gcagacgcac cgtattaagt tgatgtatta atgacgtata accggatgac
     7501 gtttcgcgcc atccggttat cagaagatta agagaaccag ctgccgaacc actgatggaa
     7561 tttcatcatc acgaaatccc acatccgacc aaagaatccg ccctcttcca cattttccat
     7621 cacgatcagc ggacgctgct caatggattt accgttaagc tggaaatcaa tggtcccgac
     7681 aacctgacct tttttcagcg gtgcggtaag ctgcggttcc gttaacgtgt agctcgcctt
     7741 caggtttttc agctgcccac gcggtatggt cactgagccc gcttcgcctg ccccgagatt
     7801 cagttcgctc ttatcaccaa accagacgcg ctgagtcaca aaggtggcat caggtttaat
     7861 tggcgtcacg gtttcaaaga agcggaaacc ccaggtcaat aatttctcag actcattaaa
     7921 acggatacgg tcagttttcg cccccaacac tacggagatt aaacgcatat cgccctgggt
     7981 agccgaagca accagattat atcccgcgcc tgccgtggtt cctgtcttca tgccatcaac
     8041 attcagattg ctgctccaca gcagacggtt acggttaggc tgacgaattt tgttgaaggt
     8101 gaactctttc tctttatgaa tggcgtactc ttccggcaca tcgtggatca atgctttacc
     8161 cagcaatgcc atatcgcgcg cggtactgaa ctgccccggc gcatccaggc cgtgcaccgt
     8221 ctggaaggta gtgttggtca gacccagttt tttggcataa ccattcatca gaccaataaa
     8281 tgactcctgg ctcccggcaa cgtaatcggc cagcgcaata caggcgtcat taccggactg
     8341 gataatcaca cctttgttca agtctgccac cgaaacctga tcgcccggtt tgaggaacat
     8401 taccgatgaa ccacgcagtg ccggatttcc cgtcgcccag gcatctttac cgaccgtcac
     8461 catatcggtg agtttaatct tatcggcctt aagcgcctgc ccaaccacat agctggtcat
     8521 gattttagtc aggctcgcgg gatccagttt ctcatccgca ttgccttctg ccagcacttt
     8581 accgctggcg taatccatta aaatccatgc acgcgcatcc acgctcggcg cttcaacggt
     8641 ttgttcggcc gcgaatgccg ttggggcaaa aaggaataaa aatgcagaac ccgctgcaag
     8701 accacgaagg agagaggagt attgcgtcat aaatgccacc cgagtatcca ttcaaaaaaa
     8761 tacgttatat cgccgtatga taagttcggt gattaataac gcacacacaa acttaaagaa
     8821 accgtaagtt ggtaaagttt ttaaagttta tgcaatatcc tgccgcttcg ctgcttctgg
     8881 tgtcattttt ttgccagctg ttgcttaaaa gttaacttta cttcaccatc ggagtcctgt
     8941 tcagcctgtg gctgcctgtc ggaaaagggg tgagtatgat tacgctgtgg ggtcggaata
     9001 attcaaccaa cgtaaaaaag tattgctgac gctcgaagaa ctggaactac cttatgagca
     9061 aattctcgcg ggccgtgagt ttgggataaa tcacgatgct gattttctgg cgatgaaccc
     9121 taacgggctg gtgccgttgt tgcgtgacga cgaaagtgat ctcattcttt gggaatcaaa
     9181 cgccattgtc cgctatctgg cggcacagta cgggcaaaaa cgcctgtgga tcgactcacc
     9241 ggcacgtcgt gcggaagcgg aaaaatggat ggactgggca aaccagacgc tcagtaatgc
     9301 ccatcgaggg atcctgatgg gattagtcag aacaccaccg gaagagcgcg atcaggccgc
     9361 cattgatgcc agttgcaaag agtgcgacgc cctgtttgcc ctgctcgatg cggaactggc
     9421 aaaagtaaaa tggttctctg gcgacgagtt tggtgtgggc gatatcgcta tcgcaccgtt
     9481 catctacaat ttgtttaacg ttggcctgac ctggacaccg cgtccaaatc tgcaacgctg
     9541 gtatcagcaa ctcactgaac gccccgcagt gcgcaaagtg gtgatgattc ccgttagcta
     9601 attgcgtggg ctaactttaa gtaattcccc actggactcg tcggtgagaa cgtataaata
     9661 accgtcgggt ccagtgcgaa catcacgaat tcgctgccct ctgtccgtta aaatacggcc
     9721 atcttctatc actttgtcgc cgttgacgct catcacaatg acatctttat ctttcagcgc
     9781 gccaataaat aatttttgct gccactgggg gaatttatcg ctgttataga aggccatgcc
     9841 gctcacagcg ggcgaatctt tccagtaaaa aacaggttgc tcggtcccgg cgacgatctc
     9901 ccctttcgct tccggtatct taaagcctga atagttgatt ccccaggttg ccagcggcca
     9961 gccgtagttt ttgccttttt gcgggatatt aatttcatca ccaccgcgcg ggccatgttc
    10021 attcagccac agtgcattac tccacggatt catcgccatt ccttgcggat tacgaatgcc
    10081 ataagaccag atctcggcgc gcgcaccgga ttcctttata aaaggattat catccgggat
    10141 ttcgccctga tcggtcagac gcaccagttt gccctgtaat ttatccagat cctgcgccgt
    10201 cgggcgctga ttgttttcgc ccagagcaat aaaaagataa cctttaccgt cgaataccag
    10261 ccgcccgcca aaatggttgc cggtagacag ttttggcatc tggcggaaga cggtgcggaa
    10321 gtcggtcact tttgagagat catcacttaa gcggccataa cccacagcag ttccggcttt
    10381 gccatcatcg ccaacttcgg aataacttaa ccagatgcgg cgagactgaa caaaatcagg
    10441 cgctaaaacc acgtccagca ggccgccctg cccgtgcgcc caaacgtccg gaactccgga
    10501 aagcggcgca gataatcctt ttcctgcttg ccaatgacgc aactcgccgc cgcgcagagt
    10561 gattaacata ccgtgattat cgggtaaaaa ggccagtgcc cagggatggt cgagtttgtc
    10621 ttgcagtact tcgacattta ccgttgcagg agccgcccag agagcggaag aaagacaaat
    10681 aaggggcaca aggaaaaagg attgtcgatg cataacgcct ccggattgac tctggcttaa
    10741 agcgtagtca gtggaggaga taacaaattc atttttacaa aaacttaaac atgaaggggg
    10801 agacgctttc tcccccttag ttttcaggcc ttctcaagca tggcgtgctt ctgcaggctc
    10861 tggatactca gcgttaagct catcagacaa ttttcaagct tatcggcgtt gacggtaata
    10921 acagtcgggc aatcatggtg cccactcatc aaacatactg cggctgtcgc taatgcttct
    10981 tcagcatgat gaagagcact ccactcttcc tgatccagat gaagattcaa ccgcagcgat
    11041 ttatcgtgca gttcgcgatt cagtttaaaa aagttatctc gtagatgatt gctttcgctg
    11101 acggacatgt atccttttgc cttcctcagt tgcacgtatg cagcgaggtc aacgcgtgcg
    11161 tcgatcaacc ggttcagcag atcgattcgc tgtctgtcaa cgaacatact tcgatcctcc
    11221 tctttccagc cttgttgcaa ttaaatagta tggctatttt ttgagcaaaa tgctgtccag
    11281 gatcaattct tcacgccgaa ttaacaaaat ttacatttcc ttcgcctccg ccagcgaatg
    11341 agattgcgat acaaatttta tccagaactc tgtagaatcc ctgccctgac ctttcctgta
    11401 actgaatatt ttttaagcta tgagcaaagt aactccccag ccgaaaatcg gctttgtttc
    11461 ccttggctgt ccgaaaaacc ttgtcgattc agagcgtatt ctcaccgaac tccgcactga
    11521 aggttatgac gtggtaccga gctatgacga tgcggacatg gtgatcgtca acacctgcgg
    11581 ctttattgac agcgcggtac aagaatcact ggaagccatt ggtgaagcgt tgaatgaaaa
    11641 cggcaaggta attgtgaccg gttgtctggg ggcaaaagaa gatcagatcc gcgaagtcca
    11701 cccgaaagtg ctggaaatca ccgggcctca tagctatgag caggttctgg agcacgttca
    11761 tcactacgtg ccaaaaccga aacacaaccc attcctgagc ctggtgccag aacaaggtgt
    11821 gaaactgacg ccgcgtcatt atgcctatct gaaaatttcg gaaggctgta atcaccgctg
    11881 caccttctgc attattccgt ctatgcgcgg cgacctggtg agccgtccga ttggcgaagt
    11941 gttaagtgaa gcgaaacgtc tggtagatgc gggcgttaaa gagattctgg tgatctcgca
    12001 ggatacttcc gcctatggcg ttgatgttaa acatcgtact ggcttccaca acggcaagcc
    12061 ggtaaaaacc agcatggtca gcctgtgcga acagttatcg aaactgggga tctggacacg
    12121 tctgcactac gtttaccctt atccgcatgt ggacgacgtc atcccactga tggcagaagg
    12181 caaaatcctg ccgtatctgg acattccgtt gcagcacgcc agcccgcgca ttctcaaact
    12241 gatgaagcgt ccgggttctg tagatcgcca actggcgcgc atcaaacagt ggcgcgaaat
    12301 ctgcccggaa ctgaccctac gctcaacctt tattgtcggc ttccctggcg agacagaaga
    12361 agatttccag atgctactcg acttcctgaa agaagcgcgt ctggatcgcg ttggctgctt
    12421 taaatacagc ccggttgaag gtgcagacgc caatgccctg cctgaccagg ttccggaaga
    12481 agttaaagaa gaacgctgga accgtttcat gcagctgcag cagcagattt ccgccgagcg
    12541 cctgcaagag aaagtgggcc gtgaaattct ggtgattatc gacgaagtgg acgaagaagg
    12601 cgcgattggt cgcagcatgg cagatgcacc ggaaatcgac ggcgcggttt atctcaatgg
    12661 tgaaaccaac gttaagccgg gtgatatcct gcgtgtgaaa gtcgagcacg ccgatgagta
    12721 cgatttgtgg ggtagccggg tttaattaat tcaggccggg caaaatcatt tgtccggcct
    12781 gcgaataatg attactgcca gctaatctga gccctgccgt ttttcttact cttatacagc
    12841 cgctcatccg ccagcatttt caagcgttcg acggtggtac attcatttga atgcgctaca
    12901 ccgatactgg tacttaaatt aatgcttccc acctggaaat gaacgatttc ttttagaatc
    12961 gacagcaact cttccagcgt tccacccgta taaatcaccg caaattcgtc accgccgaag
    13021 cggtagattt tacctttatc taccgggatc tgtgatttaa ggattttcac cactttcatc
    13081 aacacttcat cgcccagcaa atgaccgaag gtgtcgttaa tgtttttgaa tttatcgacg
    13141 tcaaacaggc acaaataacc gcctttttcc ggcagcgctt ttaaatcttc gtcaaaggat
    13201 tttctgccca ttgctttggt caggtcgtcc aggaacgccg agttatacat actgtagagt
    13261 tttttgacat cggcagccga aaagaaaagc ccgccatcca gtacgcgttc aaaatggtta
    13321 ttaatgatgg cttctttctc cacaatacca cgattaatca ctctgcgtac cagatagagg
    13381 caactggcac ccgatatcac agccaccaat gcggcaaaga aaataatcaa tgtacagacc
    13441 cgcaaataaa catctttttt atacgcaaat acgtacaatc cggtcggcaa ataggcgaag
    13501 tgctccatcg cttccgaaac ggtgaagatg gcgtttttag cattatattc atcaccggtc
    13561 accggtttac cgttcttaaa tagagagaac atcaggttct cgctgtccat cgccagcgat
    13621 tttgacagta aagaaaaacg ctccagacca agcaaaaata tcagactacg attgtgagtt
    13681 accggatagg ggtaatagac gaaggtttta ccgtcaaaag agataaaccc tgtatttttg
    13741 acatgtcgat acttcacaac ctgcataata tctgcacaat aatttttctc gaactccttt
    13801 acctgaatac attcgtcact ggaaatcaga taaggaccga catcgtacaa ataagagggg
    13861 gaaaccgagt cggcgtaagc tgtgcgcaaa ccaaccaaca gctgttcctc cgtgggattt
    13921 agcgtgttga taagatcaat tgccacgcta cgccgatatt cagcaatatt tgccaccgca
    13981 aaagcagtat caataacgga ctgtttcagg ctatacaccc gttcctttac catttgagtg
    14041 tagatcccgc aggcaactgc tgaaatcatg ataaaaatca gcagactgac tgtaagtacg
    14101 aacttattga ttctggacat acgtaaacta ctcttttact aattttccac ttttatccca
    14161 ggcggagaat ggcataggtt tctggtacag atacccctga gcctgaacac atcctaattt
    14221 aattaattcg cgcgcaacgt cttcgctctc tacgccttcc gcaatcaccg ggatccggtt
    14281 atagcgtgcc agatcgaaaa taatgcgcac aatttttccc gcagtaccga aaatatcgcc
    14341 ggtaaattgc gagtccacct ttatgctgtc tggattaatt tcataaaaac gtttcaggtt
    14401 tgacaaaccg gtgccaaagt catcaatcga tatccgtacc ccttgtttac gcagttgttc
    14461 aatattgaga taaaaatgtt cattaattcg ctcgatcacg gtttcagtga tctcaacaca
    14521 gaggctgttc gccttcaggc cattttcttt catgatggtg gtaaaacgct catgaaagtg
    14581 cggttcgttt aactgccagg gcgaaacatt aatatgcagt aagaaatcat ccttcagcga
    14641 cgcacgctga ctaaaatgtc tgaattcacc cattgccgtt ttaataatct gataacccag
    14701 ctcattgata aaccc
//
LOCUS       DAJVUN010000098        14595 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.098, whole genome shotgun sequence.
ACCESSION   DAJVUN010000098 DAJVUN010000000
VERSION     DAJVUN010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.098"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..266
                     /locus_tag="OQQ76_002525"
     CDS             <1..266
                     /locus_tag="OQQ76_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine/threonine-protein phosphatase"
                     /protein_id="HCS1968988.1"
                     /translation="HSRTGKHVIAHADYPDDVYEWQKDVDLHQVLWSRSRLGERQKGQ
                     GITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ"
     gene            complement(267..458)
                     /locus_tag="OQQ76_002526"
     CDS             complement(267..458)
                     /locus_tag="OQQ76_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebW family protein"
                     /protein_id="HCS1968989.1"
                     /translation="MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCF
                     PIEDFIDGFWRPAQEYGDF"
     gene            complement(563..799)
                     /locus_tag="OQQ76_002527"
     CDS             complement(563..799)
                     /locus_tag="OQQ76_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1480 family protein"
                     /protein_id="HCS1968990.1"
                     /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAW
                     DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA"
     gene            complement(917..2356)
                     /gene="rsmF"
                     /locus_tag="OQQ76_002528"
     CDS             complement(917..2356)
                     /gene="rsmF"
                     /locus_tag="OQQ76_002528"
                     /EC_number="2.1.1.178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase
                     RsmF"
                     /protein_id="HCS1968991.1"
                     /translation="MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVN
                     TLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEA
                     SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHA
                     NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN
                     QEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD
                     LFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKD
                     REAGQIRQAAADVGLNWDENLRLWQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHN
                     KGYRWQHEAVIALATPDNVNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPI
                     GLAKRIGSRLKNSYPRELVRDGKLFTGNA"
     gene            complement(2436..5069)
                     /gene="yebT"
                     /locus_tag="OQQ76_002529"
     CDS             complement(2436..5069)
                     /gene="yebT"
                     /locus_tag="OQQ76_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416348.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding membrane homeostasis protein YebT"
                     /protein_id="HCS1968992.1"
                     /translation="MSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQD
                     RSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDAL
                     REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLDNGD
                     LMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKG
                     SRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAH
                     SQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTL
                     LRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDV
                     LTLTLTAPESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSK
                     FVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENS
                     LSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNL
                     LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILY
                     ASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLY
                     PEYVQTFARGGTRFSVVTPQISAAGVEHLDTILQPYINVEPGRGNPRRDFELQEATIT
                     DSRYLDGLSIIAEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY
                     QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGK
                     HFLLQESEPKEWREWGTALPK"
     gene            complement(5038..6321)
                     /gene="yebS"
                     /locus_tag="OQQ76_002530"
     CDS             complement(5038..6321)
                     /gene="yebS"
                     /locus_tag="OQQ76_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity lipid transport subunit YebS"
                     /protein_id="HCS1968993.1"
                     /translation="MALNTPQITPTKKITVRSIGEELPRGDYQRCPQCDMLFSLPEIN
                     SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV
                     MQGIWQMTKQGDTITGAMVFFCVIGAPLILVSSIAYLWFGNRLGMNLRPVLLMLERLK
                     EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERYY
                     PQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVL
                     LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT
                     LLLSTHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA
                     FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD"
     gene            6451..6948
                     /gene="msrC"
                     /locus_tag="OQQ76_002531"
     CDS             6451..6948
                     /gene="msrC"
                     /locus_tag="OQQ76_002531"
                     /EC_number="1.8.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine (R)-S-oxide reductase"
                     /protein_id="HCS1968994.1"
                     /translation="MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDVNW
                     AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDA
                     ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF
                     ASVAG"
     gene            7045..7743
                     /gene="proQ"
                     /locus_tag="OQQ76_002532"
     CDS             7045..7743
                     /gene="proQ"
                     /locus_tag="OQQ76_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707288.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HCS1968995.1"
                     /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD
                     RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ
                     LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK
                     PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN
                     SGMSLIVRAEHLVF"
     gene            7763..9811
                     /gene="prc"
                     /locus_tag="OQQ76_002533"
     CDS             7763..9811
                     /gene="prc"
                     /locus_tag="OQQ76_002533"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HCS1968996.1"
                     /translation="MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATV
                     SERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGD
                     ELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEA
                     ELNALWDSKVKFDELSLKLAGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF
                     AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAI
                     SVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLT
                     RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDL
                     RSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFS
                     ASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI
                     QKFYRINGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTA
                     FGPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRL
                     ARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK
                     "
     gene            10003..10884
                     /gene="htpX"
                     /locus_tag="OQQ76_002534"
     CDS             10003..10884
                     /gene="htpX"
                     /locus_tag="OQQ76_002534"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014229823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HCS1968997.1"
                     /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGF
                     GGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAP
                     DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN
                     TFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFS
                     RHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH
                     PPLDKRIEALRTGEYLK"
     gene            complement(10930..12303)
                     /locus_tag="OQQ76_002535"
     CDS             complement(10930..12303)
                     /locus_tag="OQQ76_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1968998.1"
                     /translation="MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIAT
                     DLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSD
                     SLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIA
                     AAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLL
                     ITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICT
                     SVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAG
                     LLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRE
                     RSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRI
                     TQPRSRA"
     gene            12480..13271
                     /gene="kdgR"
                     /locus_tag="OQQ76_002536"
     CDS             12480..13271
                     /gene="kdgR"
                     /locus_tag="OQQ76_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator KdgR"
                     /protein_id="HCS1968999.1"
                     /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS
                     KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREISR
                     LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV
                     KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFG
                     VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF"
     gene            complement(13414..13653)
                     /locus_tag="OQQ76_002537"
     CDS             complement(13414..13653)
                     /locus_tag="OQQ76_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969000.1"
                     /translation="MRFIIRTVMLIALVWIGLLLSEYGVLIGSKENAAGLGLQCTYLT
                     ARGTSTVQYLHTKNGFLGITDCPLLRKSNIVADNG"
     gene            13812..13955
                     /gene="mgrB"
                     /locus_tag="OQQ76_002538"
     CDS             13812..13955
                     /gene="mgrB"
                     /locus_tag="OQQ76_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP/PhoQ regulator MgrB"
                     /protein_id="HCS1969001.1"
                     /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF
                     IPW"
     gene            14030..14317
                     /locus_tag="OQQ76_002539"
     CDS             14030..14317
                     /locus_tag="OQQ76_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebO family protein"
                     /protein_id="HCS1969002.1"
                     /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE
                     LLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSVDDEDIIRLVAER"
BASE COUNT         3824 a         3557 c         3739 g         3475 t
ORIGIN      
        1 tacacagtcg caccggcaag catgttattg ctcatgcgga ttatccagat gatgtttatg
       61 aatggcaaaa ggacgttgat ttgcatcagg tcttgtggag ccgctcgcga ttaggtgaac
      121 gccaaaaagg gcagggaatt acaggtgctg atcatttctg gtttggtcat acaccgttgc
      181 gacatcgcgt ggatattggc aacctgcatt atattgatac cggtgctgtc tttgggggcg
      241 aactgactct tgtgcaattg caatgattaa aaatcaccgt actcctgtgc aggtcgccag
      301 aaaccatcta taaaatcctc aatcggaaaa caaccgccct ggcggatccg ttgatcgctc
      361 atagaataaa gacactgctg ttccgtgttg tagacatcca caacaatatc ttcacaaccg
      421 ccatccaggt agcaaacaaa aagtaccagc gcgaacattt catccccgaa gtgtggtgcc
      481 gtaccgttaa gtttaggaga gattttacaa cgggggaata accaggacaa ataacccgcc
      541 atgccgacgg gttctttttg gatcaggcaa gacgcataat ccaggcatca gattgttgat
      601 cgtaacgggt acggtaaagg acagagtgtt cgccatttag cagggcaggg atactggttt
      661 cagcatccca ggcatcgagt tgcatacata aatcggggtc agatttacaa ggaatggtta
      721 acgttcgatc acccggcgat tcaccgtgta attcgccgtc gtcgatttca aaagcgccta
      781 tgcgcacact ggttttcatc ttcgtgctct ccatttagct gccggttgtg gtacgaccag
      841 tccgatcgca ccatttttca gcctagttga ggcagccgaa tgtgccagtc aaaaagtgcg
      901 ctttttttgt gcgctgtcag gcgttaccgg taaaaagttt cccatcgcgc accagttcac
      961 gcggatagct gtttttcaat cgcgaaccaa tccgtttggc taaaccaatc ggttgatgct
     1021 ggaaagtaac caacacgtca tccgccactg gcgcggcttg cgggtaaaca tcgcgcccgc
     1081 gataccactc ctccgcttcc tgcggtgtca gttcaaaagc gttcacattg tcgggggtgg
     1141 caagggcaat aactgcttca tgctgccagc gataaccttt gttgtgcgtt tcggcaagtt
     1201 taatccccaa gcgagaaaat cggactttac cgatcagggc ttcaatgccc accgggaaca
     1261 accacagttc tttgtcacgc tgccagaggc gcaggttttc atcccagttt aagccaacat
     1321 ctgcagccgc ttggcgaatt tgtccagctt cgcgatcttt caccgggctg aacggaaaat
     1381 taccgacttt gtatttgggg gcgggtaagg cgggaatcgc ctgagtttta cgcagacgag
     1441 caacgaagaa gccttcgcag tcgtaaattt gtgggaaaac atgcaaaaag ccttcttcgg
     1501 tcagcgcttt gtttgcacca gggaagagat cgccaagtgg taaaaactct actgcgtcgg
     1561 ggtaagtctc tttcagccac aggcaaacgg cttcgttttc ttcctggttt aaggtacagg
     1621 tcgagtaaac cagcgtacca ccaggacgta atgcatgaaa ggcgctgtcg ataagctccc
     1681 gttgtgtagc tgcgatttcc tgattgcttt ctggtgacca gttttttagc gcatcgggat
     1741 ctttacgcac cacgccttcg ccggagcagg gagcgtccag caaaatggca tcaaacattt
     1801 ctggcactgc cgcaccaaac acgcggccat caaaatgtgt gagcgcaaca ttactgatgc
     1861 cacagcggct gatattggca tgtaacactt ttacccgact ggcggaaaac tcattggcaa
     1921 ggattgcccc ttcgttattc atccgcgcgg caatttgcgt cgtttttgag cctggcgcag
     1981 cagcgacatc catcacccgc tgtggtgcat taccgtcagc aaacaaggcg gcgacgggca
     2041 acattgaact ggcttcctga atataaaaca ggccacttaa atgctcggcg gtactaccca
     2101 atggcaatgc atcttcattg tcgcgttcaa tccagaaacc ttcttcacac cacggaattg
     2161 gcgtaagcgt ccagccataa ggagcggtta attgcaggaa atcagcaacg gagattttca
     2221 gcgtattaac gcgaatgctg cggcgcaacg ggcgctgaca ggcggcaaga aaatcatcaa
     2281 atgagagcgt cgaaggcata gcttcgcgca tttgtgtcag aaacgcgtcc gggaaataaa
     2341 cggtgtgttg ggccacgagc atgtaccact ggcaaaaaaa caggcgcgca gtttagcata
     2401 aacgctccgg cgcaggcacg ccggagcagt gggcattatt tgggaagcgc agttccccat
     2461 tcacgccact ctttcggttc actttcctgc aacaggaagt gtttgccttc ctgggctttc
     2521 ggtgccagtg gcgtacccgg aggcgtggcg aaggcgatgc cgccacggat aaactggtta
     2581 aaggtgccgg ttttcactac gccgcccgtc agaccaaagt ccagactgta acccgatgcc
     2641 aaccagaaga cggaattgtt acgcaccagg tgttgatagc gtttactgat gcgcatcgca
     2701 atcatcacgc gatctgacaa tgtccccagc gtcattccgg taaccgtacc tacttccaga
     2761 ccacggaaca gcacaggcgt accaatacct aacgaaccgg cttccggtgc ttcggcaata
     2821 atgcttaagc catccaggta acgcgaatca gtaatagtag cttcttgcaa ctcaaagtca
     2881 cggcgaggat taccccgacc tggttcgaca ttgatatacg gctggaggat agtatctaga
     2941 tgctcaacgc ctgcggctga aatttgcggt gtgaccaccg agaagcgcgt accgccgcgg
     3001 gcgaaggtct ggacatactc cggatagagc accgcctttg cctgtacttc attgcgcgcg
     3061 gtaatcagat ccagcgtctg gatttgcccg atatcaatac cgagatagcg aattggcatc
     3121 ccgaccgcca gttttccggc atcgaaagcg tgaagcgtaa tctgcccacc aaccgcacgg
     3181 gccgctgttt cggaagcata cagaattcgt ttgtcgcctt tacgctgact ggcgctggca
     3241 ccgctgaggt tatcgaagct aatggctccc tttaatgctc tggagagcgg ggatgcctgt
     3301 acggtcaggc cactaccatt cagctgaact ttcgccccgc cttctgccca gaacacgcta
     3361 ttgctggtca gaaggttgcg atactccggc ttaatatgca gatcgatatc aaacgcgtta
     3421 gctcgcggac gcacggtaat cacttcacca acttcaaatt tacggtacag cactaccgat
     3481 cctgcctgca catccggcag cgtctctgca ctcaaactca cggttgtggt gggtaaatcg
     3541 ctaaggctgt tctccagcgc tttttccaga ttggcataca gtggatagct ggctttcatc
     3601 tcacctttat cgcctggcag aatacgtatc ccgccgttaa tccattctga ggcgctggca
     3661 ccaagaaact caacgccatc cagccccacc ttcacgtcga cacggctgtt gacgacaaat
     3721 ttgctatcgc cttttaccag ttcgcgatgc tgaggctcga tggcgacggt aaaggtaacg
     3781 cctttgctgg tgagtttacg atcaataacc tggcctacct gcacgccgtg aagaatgagc
     3841 ggctgacccg tatcaatacc gtaactttcc ggcgcggtca gggtcagcgt cagaacatca
     3901 ggttcatgca gcagtgcttt ttcgcctggc acaacaacga actctttgcg tggctcgcca
     3961 tcgccgggta ccaactcgaa ggttttgcca gtcagcaggg cgctgagatt ggcatcgcta
     4021 agggataatt tcggattacg taattcgatg cgggtatttt cacgaagcag ggtaacgacg
     4081 ctgggatcaa ctgtcatttc cccagtgact ttaccaccag gatttaaatc cagtttagtt
     4141 agctgtccga cttccagtcc ctgatacatt aatggcgtcg agtcggcggt taatccggcc
     4201 ccactcggca gttccagttt gattattacg ccacgctggc tatgggcgag gtcttcatac
     4261 agaccaaagg tatcttccgc ctcggcaggt ttcgactctt ctggtgaatc gaaggcaatc
     4321 gcaccgttaa ccagtgccgc caggctttcc agtttcacct tcgcgccact gatactgaca
     4381 ttggcatcaa cgccggaaac gttccagaaa cggctacctt ttttcaccag atcggtaaaa
     4441 cgccgctcga tcaggacatc aatcaccacg ccttgtttgt tgggattgat ggcatagtcg
     4501 tagacttttc ccaccgggat cttgcggaaa tagaccaatg aaccgctgtt cagcgaaccg
     4561 agatcggggg cttgcaggtg gatcatcaga tcgccattgt ccagccgata tttcggttgg
     4621 gtatcgagtg cgacaaagtg atcctgctct ttacctgtac ccggcatcat gccgatatag
     4681 ttcccaccga cgagggcgtc cagcccggag acacctgcca acgatgcttt tggcgtcacc
     4741 agccagaatt gagtctcttc gcgcagcgca tctttcatat cggacttgat gctgaccttg
     4801 acttcaatct tacgaagatc gtcgctgagg ctgatatcct gcactgttcc gacttcaacg
     4861 ccctgataac gaacaggcgt acggcccggg acaataccat ccgccgacat aaagtcgatg
     4921 gtgacggtat tacttcggtc ctgataactg tcccaaatca gccaaccggc aatcattagc
     4981 gcgatgaaag gcagcagcca gaaaggtgag atacggcgtt tatttttaat ctgcgcttca
     5041 gtcgtcgaag cgggcgtttc ctgactcatg tgcatcccaa agtaagcggc tgtccagcca
     5101 ttccacagca agaatagtca aaattacggc tgcgccaaaa taaaacgcag ccggtcccat
     5161 agtaaaagcg aggatctgat cgcgattaat cagcgacatg gttaaagata tgacaaacag
     5221 gtcgagcatc gaccagcgtc caatccaggt caccatccgc agtaacagaa tgcgtgtgcg
     5281 taaaccttgc tggcatttaa aatgagtgct caacagtaaa gtgaacatga cgatcacttt
     5341 agtaaacggt accagaatac tggcgataaa cacgattccg gcgaccgcaa tgttgctact
     5401 tgccagcgac ataatcccgg aaagaatcgt atcttcctgc cggccaccat tcagataaat
     5461 gatagaaata ggcaataggt tggctggtaa caacaaaacg attgacgcta acagcgccgc
     5521 ccagcatttt tgcaaactat gacgacgacg caggcgtagc gggatatggc aacgcgggca
     5581 gcgaccacgc tgatcaggat agccggtaaa atggcaccca agacagacac gaagtttctc
     5641 gtccctacgc gtagcggggc gctgcggata atatcgctcc cacagctcct caacattaag
     5701 atgtgacaac gtcaccgtcg ttaaaatcac caacgccaca aaagagaaca agccgacacc
     5761 cgcctggata tgggcataat cctgtacctt tatagaagca acgccaatgc cgaccaggta
     5821 gatatccagc attacccact ctttaagacg ctcaagcatc agcagtaccg gacgtaaatt
     5881 cattcccagt cggttaccaa accataaata tgctatggag gacaccagaa tgaggggggc
     5941 accaataacg cagaaaaaga ccatcgcccc cgttatcgta tcgccctgtt tggtcatttg
     6001 ccagatgcct tgcatgacgt ttgcgtcgat acgaatacct aacagccaga tatgcaacag
     6061 cggttcgccc caggcaaacg gcatcagcaa cagcatggtg aaagccattg ccgccaggcg
     6121 cgttagcgac cagtcgcgcc cgtcgcgaat ttttgcctga cagcgcggac aataggcact
     6181 ctgatgagaa tttatctcgg gcaggctaaa cagcatgtca cattgcgggc aacgttggta
     6241 atcaccacgc ggcagttcct cgccgattga cctcactgtt atcttttttg tcggcgtaat
     6301 ttgtggtgtg ttaagagcca tgacgtgcca aatgtaataa gaattaacat taatcttaac
     6361 ccatgatggg aatgatcttg agcattaacg catttaatgc ttattttaat aggctggcag
     6421 ttccaggtaa gacaaacaag tgattatata atgaacaaaa cagaatttta cgcggattta
     6481 aatcgcgact ttaacgcgct gatggcggga gaaaccagtt ttctggcaac gcttgcgaac
     6541 accagtgcgt tgttatacga gcgtctcact gacgtaaact gggcaggttt ttatttgctt
     6601 gaggacgata cactggtact cggaccattt cagggcaaaa ttgcctgtgt ccggataccc
     6661 gtcgggcgcg gggtgtgcgg cactgcggtt gcccgcaatc aagtgcagcg tatcgaggat
     6721 gttcacgcgt ttgacgggca tattgcctgt gatgcggcga gtaattctga aattgttctg
     6781 ccgctggtgg tgaaaaatca gattattggt gttcttgaca tcgatagtac cgtcttcggt
     6841 cgctttacag acgaggacga gcaaggctta cgtcagcttg tggcacagct tgaaaaagtg
     6901 cttgcaacga cggattacaa aaaattcttt gcgagcgtcg caggataatc aacggataac
     6961 gtagcattta ctggtagcgt cattataatg acgcctgttc atgcctgcgc ttgttggcta
     7021 cgtccgttgt aatcaggaaa tttcatggaa aatcaaccta agttgaatag cagtaaagaa
     7081 gtaatcgcgt ttctggccga acgttttccc cactgtttca gtgcggaagg tgaagcgcgt
     7141 ccgctgaaaa tcggtatttt tcaggatttg gtcgatcgtg ttgccgggga aatgaacctg
     7201 agcaaaacgc aattacgatc cgctttacgt ctctacactt cgagctggcg ttatctttac
     7261 ggtgttaaac ccggcgcaac gcgtgtcgat cttgacggca acccatgcgg tgagctggac
     7321 gagcaacatg tagagcatgc tcgcaagcag cttgaagaag cgaaagcgcg tgttcaggca
     7381 cagcgtgctg aacagcaagc gaaaaaacgc gaagctgccg cagctgctgg tgagaaagaa
     7441 gacgcaccgc gccgcgaacg caagccacgt ccgaccacgc cacgccgcaa agaaggcgct
     7501 gaacgtaaac ctcgtgcgca aaagccggta gagaaagcgc caaaaacagt aaaagcacct
     7561 cgcgaagaac agcacacccc ggtttctgac atttcagctc tgactgtcgg acaagctctg
     7621 aaggtgaaag cgggtcaaaa cgcgatggat gccaccgtat tagaaatcac caaagacggc
     7681 gtccgcgtcc agctgaattc gggtatgtct ttgattgtgc gcgcagaaca cctggtgttc
     7741 tgaaacggag gccgggccag gcatgaacat gttttttagg cttaccgcgt tagctggcct
     7801 gcttgcaata gcaggccaga ccttcgctgt agaagatatc acgcgtgctg atcaaattcc
     7861 ggtattaaag gaagagacgc agcatgcgac ggtaagtgag cgcgtaacgt cgcgcttcac
     7921 ccgttctcat tatcgccagt tcgacctcga tcaggcattt tcggccaaaa tctttgaccg
     7981 ctacctgaat ctgctcgatt acagccacaa cgtgctgctg gcaagcgatg ttgaacagtt
     8041 cgcgaaaaag aaaaccgagt taggcgatga actgcgttca ggcaaactcg acgttttcta
     8101 cgatctctac aatctggcgc aaaagcgccg ttttgagcgt taccagtacg ctttgtcggt
     8161 actggaaaag ccgatggatt tcaccggcaa cgacacttat aaccttgacc gcagcaaagc
     8221 gccctggccg aaaaacgagg ctgagttgaa cgcgctgtgg gacagtaaag tcaaattcga
     8281 cgagttaagc ctgaagctgg caggaaaaac ggataaagaa attcgtgaaa ccctgacacg
     8341 ccgctacaaa tttgccattc gtcgtctggc gcaaaccaac agcgaagatg ttttctcgct
     8401 ggcaatgacg gcgtttgcgc gtgaaatcga cccgcatacc aactatcttt ccccgcgtaa
     8461 taccgaacag ttcaacactg aaatgagttt gtcgctggaa ggtattggcg cagtgctgca
     8521 aatggatgat gactacaccg ttatcaattc gatggtggca ggtggtccgg cagcgaagag
     8581 taaagctatc agcgttggtg acaaaattgt cggtgttggt caaacaggca agccgatggt
     8641 tgacgtgatt ggctggcgtc ttgatgatgt ggttgcctta attaaagggc cgaagggcag
     8701 taaagttcgt ctggaaattt tacctgctgg taaagggacc aagacccgca ctgtaacatt
     8761 gacccgtgaa cgtattcgtc tcgaagaccg cgcggttaaa atgtcggtga agaccgtcgg
     8821 taaagagaaa gtcggcgtgc tggatattcc gggcttctat gtgggtttga cagacgatgt
     8881 caaagttcaa ctgcagaaac tggaaaaaca gaatgtcagc agtgtgatca tcgacctgcg
     8941 tagcaatggc ggtggggcgt tgaccgaagc ggtatcgctc tcaggtctgt ttattcctgc
     9001 gggtcccatt gttcaggtcc gcgataacaa cggcaaggtt cgtgaagaca gcgataccga
     9061 cgggcaggtg ttctataaag gcccgctggt ggtactggtt gaccgtttca gtgcttcggc
     9121 ttcagaaatc tttgccgcgg caatgcagga ttacggtcgt gcgctggttg tgggtgaacc
     9181 gacgtttggt aaaggcaccg ttcagcaata ccgttcattg aaccgtattt acgatcagat
     9241 gttacgtcct gaatggccag cgctgggttc tgtgcagtac acgatccaga aattctatcg
     9301 cattaacggc ggcagtacgc aacgtaaagg cgtaacgcca gacatcatca tgccgacggg
     9361 taatgaagaa acggaaacgg gtgagaaatt cgaagataac gcgctgccgt gggatagcat
     9421 tgatgccgcg acttatgtga aatcaggcga tttaacggcc tttgggccgg agctgctgaa
     9481 ggaacataat gcgcgtatcg cgaaagatcc tgagttccag aacatcatga aggatatcgc
     9541 gcgcttcaac gctatgaagg acaagcgcaa tatcgtttct ctgaactacg ctgtgcgtga
     9601 gaaagagaat aatgaagatg atgcgacgcg tctggcgcgt ttgaacgaac gctttaaacg
     9661 cgaaggtaaa ccggagttga agaagctgga tgatctaccg aaagattacc aagagccgga
     9721 tccttatctg gatgagacgg tgaatatcgc actcgatctg gcgaagcttg aaaaagccag
     9781 acccgcggaa caacccgctc ccgtcaagta atatcaatca ggcacaagaa attgtgcctg
     9841 attttttaac agcggcaaga tgccgtaaat cagatgctac aaaatgtaaa gttgtgtctt
     9901 tctggtgact tacgcactat ccagacttga aaatagtcgc gtaacccata cgatgtgggt
     9961 atcgcatatt gcgttttgtt aaactgaggt aaaaagaaaa ttatgatgcg aatcgcgctc
    10021 ttcctgctaa cgaacctggc cgtaatggtc gttttcgggc tggtactgag cctgacaggg
    10081 atacagtcga gcagcgttca ggggctgatg atcatggcct tgctgttcgg ttttggtggt
    10141 tccttcgttt cgcttctgat gtccaaatgg atggcattac gatctgttgg cggggaagtg
    10201 atcgagcaac cgcgtaacga aagggaacgt tggctggtca atactgtagc aacccaggct
    10261 cgtcaggcag ggatcgctat gccgcaagtg gctatctacc atgcgccgga catcaacgct
    10321 tttgcaaccg gtgcgcgccg tgatgcctct ctggttgctg tcagcaccgg tttgctgcag
    10381 aacatgagcc cggatgaagc cgaggcggta attgctcacg aaatcagcca catcgccaat
    10441 ggtgatatgg ttaccatgac gctgattcag ggcgtggtga acaccttcgt tatctttatt
    10501 tcccgtattc tggcgcagct tgccgcgggt tttatgggcg gaaatcgtga tgaaggtgaa
    10561 gagagcaacg gcaacccgct gatctacttt gcggttgcaa cggttctgga actggtgttt
    10621 ggtattctgg cgagcattat caccatgtgg ttctcgcgtc atcgtgaatt ccatgctgat
    10681 gccggttcgg caaaactggt tggtcgcgag aaaatgattg ccgcgctgca gcgcctgaaa
    10741 accagctatg aaccgcaaga agcaaccagc atgatggctt tctgcattaa cggtaagtcg
    10801 aaatcgctca gtgagttgtt catgactcac ccgccgctgg ataaacgaat tgaagctctg
    10861 cgtacgggtg aatacctgaa gtaatatgaa gtaaatacta aaaagtgcgt cctgatcgac
    10921 gcgctttttt tatgccctgg atcgtggctg agtgatacgt aaaccactga cacaggcagc
    10981 aatcactgcc agaatagccg cagccatcag cgaaacgtgc gtaccattat caccgaactg
    11041 atttagcatc agcgccacca gtgccgcgcc gctactctga cccagtagac gagccgttcc
    11101 taacatgcca ctggctccac cgctacgttc gcgaggagcg gaggtaataa tggtgtggtt
    11161 attgggtgac tggaacaagc caaatccagc gccacataag atcatcggcc agataatatt
    11221 gatatccgca ggtgacgcgg gcagcagaac cagggaaaaa agccccgcag ccatgatgaa
    11281 caaccctaga gcacccagca atcctgcatg tacgcgttca atcaaatagc ctgccaacgg
    11341 agccatcacc atcgttgcta acggccacgg tgtcagaagt aaacctgttt cgacttcact
    11401 acgcccgagc acggtttgca ggtaaaaggg cagggaaacc attgccagca tttgtgcgca
    11461 gaaagagcaa acagatgtgc aaatagaaag tgaaaacagc gggatacgca gtaaatccac
    11521 cggtagcagc ggtacgggaa gagaaagctg gcggcgaata aagaaaatac caacaacaac
    11581 cattaccacc agttccgcag caattaacgt cagcgattgc ccctgagcga aaccactcaa
    11641 cgcagtgata agcaggccga aggttaacgc gttcatcacg gcgctgggca ggtcgaaacg
    11701 gggtttactg gcgcgagaac cattgggtgg cagaaaacgc atcgccagaa gcagggcgat
    11761 aatacctaac ggtacgttga ttaaaaataa ccatttccag gatgcgatgg agaggattgc
    11821 tgcagcaatt gtcggcccgg cagcagaaga gacggcaaca ataaacgagt ttatgcccat
    11881 ccctctcccc agaaaacgtt gtggatagat caggcggata agtgcggtat taacgctcat
    11941 caacgctgca ccgccgaaac cttgtatgac acgcgcaagg gtgagcattt gcagcgaatc
    12001 agaaagggcg cagaacagtg aagacaacag aaaaacgacc agaccgcatt tataaatacg
    12061 tcgatagcca aacatatcgc ccagaaacga aaacgagagc agggagatga caatggcgat
    12121 ttgataggcg ttcactaccc agatggaact ggctggcgtg gcatgaaggt ccgtggcgat
    12181 tgttggcagg gcgacgttgg cgattgcgcc gtcaaggaca gccatcgaaa taccaatcac
    12241 aatggttaat atcgcaccgt atcgctgggg caatggcagg ccgtcggcct gaacttttgg
    12301 cataggaatt ttatatcttt ggtgaataat caacaggggt atgattctag cactgatatt
    12361 cacggtggat gtcgcagaat tgtaactaac cggcaaaaga tggattgcga cccccctggt
    12421 gcgaaattat aataaaaaac agttctgatt tttataaaac actcgcaatg aggtgataaa
    12481 tggctaacgc agatctggat aaacagcctg attctgtatc ttccgtgcta aaagtttttg
    12541 gcattttgca ggcgctgggt gaagagcgcg aaatagggat aaccgagctg tcgcagcgcg
    12601 tcatgatgtc aaaaagcacc gtttatcgct ttttacagac catgaaaacc ttaggttatg
    12661 tggcgcagga aggggagtcg gagaaatatt ccctgaccct gaaattgttt gaactgggcg
    12721 ctcgcgcgtt acaaaacgtc gatttaattc gtagcgcaga tatccagatg cgtgagatct
    12781 cccgcctgac caaagaaact atccacctcg gcgcactgga cgaagacagt attgtttaca
    12841 ttcacaaaat tgactctatg tacaatttgc gcatgtattc acggattggg cgtcgtaatc
    12901 cgctgtacag caccgcgatt ggtaaggtac tgctggcatg gcgcgatcgc gatgaagtga
    12961 agcaaattct tgagggcgtg gagtataaac gcagtaccga gcggaccatc accagtacag
    13021 aagcgttatt acccgttctg gaccaggtgc gcgagcaggg gtatggcgaa gataacgaag
    13081 agcaggaaga agggctgcga tgcattgcgg taccggtatt tgatcgcttt ggcgtggtca
    13141 ttgccggttt gagcatctcc ttcccgacgt tgcgtttctc tgaagagcgt ttacaggaat
    13201 atgtcgcaat gttgcatacc gcagcgcgca aaatttctgc ccaaatgggt tatcacgact
    13261 atccgttctg atgagagtaa gaacctgtcg gaatatcaaa cagacaggtt ctttatttag
    13321 catgagaaaa ataaagttga aggtgcgtta tattaaacgc gcttgctata agaatatttt
    13381 actcatgagt gagaatctgg ttatttatta cccttaacca ttatcggcca cgatattgct
    13441 tttacgtaac agtgggcaat ctgttatccc caagaaacca tttttagtgt gcaagtattg
    13501 taccgtgctg gtgcctctgg cagtcagata ggtacattgc aaacctaatc ctgcggcatt
    13561 ctctttgctt ccaatcaaaa cgccatattc gctgagtaat aatcctatcc ataccagtgc
    13621 tatcagcata actgtgcgaa tgatgaatcg cattacaacc tcttctcttt ttatgttcgc
    13681 ttaatcgtag cggcaatatg cgctgaagca agctactcat tccgaaaaag cacgaatatc
    13741 gacatagtta ggcgctgttt aactaacgca tgctagttta atgacataag gtaggtgaag
    13801 cggagattgg agtgaaaaag tttcgatggg tcgttctggt tgtcgtggtg ttggcttgct
    13861 tgctgctttg ggcgcaggta ttcaacatga tgtgcgatca ggatgtacaa tttttcagcg
    13921 gaatttgtgc cattaaccag tttatcccgt ggtgatatca ttttttcagc actagatttt
    13981 cttcctctcc agcagtggta gaatagcgcc tctactcaga ggtggtgaaa tgaacgaagt
    14041 tgtaaattca ggcgtgatga acattgcgtc tttggttgta tcggtggtgg ttcttcttat
    14101 cgggctcatc ttgtggtttt ttatcaatcg tgccagttca cggactaacg aacagattga
    14161 actgcttgag gcgttgctgg atcagcaaaa acgtcaaaat gcactgttac gtcgtttgtg
    14221 cgaagcaaac gaaccagaga aagcagataa aaagaccatt gagagtcaaa aatcggttga
    14281 tgacgaagat attattcgcc tggtcgccga acgataatcc ttcctcaatc ttgagtaacc
    14341 ccgtcgttga agggttactc aattcatcct gattatacgc actgtcatgg tgcaactgct
    14401 tcaaattaaa actctggtct gacttcagat aattatcata ttatttattt gcgtaacggg
    14461 atatcagaaa aagatatttt cctcattaat ttattaggat gtttacatcg gatttgtgat
    14521 taagcgtggt attatttatt agcgaaacgt ttctctcttg atttttttgc tcattcatca
    14581 atttttctta tttta
//
LOCUS       DAJVUN010000099        14532 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.099, whole genome shotgun sequence.
ACCESSION   DAJVUN010000099 DAJVUN010000000
VERSION     DAJVUN010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14532
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.099"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..956
                     /gene="xylF"
                     /locus_tag="OQQ76_002540"
     CDS             <1..956
                     /gene="xylF"
                     /locus_tag="OQQ76_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1969003.1"
                     /translation="LLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKK
                     AESLGAKVFVQSANGNGETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIK
                     VLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRA
                     GQMKVLKPYVDSGKIKVVGDQWVDGWLPENALTANNNKIDAVVASNDATAGGAIQALS
                     AQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKA
                     DTSLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL"
     gene            1034..2575
                     /gene="xylG"
                     /locus_tag="OQQ76_002541"
     CDS             1034..2575
                     /gene="xylG"
                     /locus_tag="OQQ76_002541"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HCS1969004.1"
                     /translation="MPYLLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKS
                     TLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENI
                     FLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEQETSVLLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDG
                     QHIGTRDAAGMSEDDIITMMVGRELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKR
                     VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQA
                     IAQGIAMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQL
                     KVKTSSPDLAIGRLSGGNQQKAILARCLLLNPRILILDEPTRGIDIGVKYEIYKLINQ
                     LVQQGIAVIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSEHHV
                     EKQSV"
     gene            2553..3734
                     /gene="xylH"
                     /locus_tag="OQQ76_002542"
     CDS             2553..3734
                     /gene="xylH"
                     /locus_tag="OQQ76_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose ABC transporter permease XylH"
                     /protein_id="HCS1969005.1"
                     /translation="MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFT
                     WTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICD
                     VWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT
                     TVSPTSAAMSQIGQSYLPASIGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVV
                     GRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLE
                     AARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG
                     TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR
                     S"
     gene            3812..4990
                     /gene="xylR"
                     /locus_tag="OQQ76_002543"
     CDS             3812..4990
                     /gene="xylR"
                     /locus_tag="OQQ76_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator XylR"
                     /protein_id="HCS1969006.1"
                     /translation="MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED
                     FRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATD
                     NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGL
                     ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGI
                     DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRS
                     TDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMI
                     HAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
                     "
     gene            complement(5098..5922)
                     /locus_tag="OQQ76_002544"
     CDS             complement(5098..5922)
                     /locus_tag="OQQ76_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein bax"
                     /protein_id="HCS1969007.1"
                     /translation="MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKAS
                     NKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWL
                     ISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA
                     ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPA
                     YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM"
     gene            6242..8272
                     /gene="malS"
                     /locus_tag="OQQ76_002545"
     CDS             6242..8272
                     /gene="malS"
                     /locus_tag="OQQ76_002545"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HCS1969008.1"
                     /translation="MKLASCFLTLLPGFAVAASWTSPGFPVFSEQGTGTFVSHAQLPK
                     GTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGKYTLQIDTRSGTPT
                     LMISIQNAAEAVANLVRECPKWDGLPLTLDVSATFPEGAAVRDYYSQQIAIVKNGQIT
                     LQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMA
                     EIGTFHGGDLRALINKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYY
                     TQDWTNLDANMGNEADLRTLVDSAHQRSIRILFDVVMNHTGYATLADMQEYQFGALYL
                     SGDEVKKTLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNP
                     GFDDLTMSLAFLPDIKTESTTASGLPVFYKNKTDTHAKVIEGFTPRDYLTHWLSQWVR
                     DYGIDGFRVDTAKHVELPAWQQLKTEASSALREWKKTNPDKALDDKPFWMTGEAWGHG
                     VMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDT
                     RLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSA
                     ANVAHWQKISQFRARHPAIGAGKQTTLSLKQGYGFVREHGDDKVLVIWAGQQ"
     gene            8450..9703
                     /gene="avtA"
                     /locus_tag="OQQ76_002546"
     CDS             8450..9703
                     /gene="avtA"
                     /locus_tag="OQQ76_002546"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HCS1969009.1"
                     /translation="MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIP
                     EMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIAL
                     TNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELL
                     PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVID
                     NAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI
                     ISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHK
                     PEGAIFLWLWFKDLPITTEQLYQRLKARGVLMVPGHNFFPGLDKPWPHTHQCMRMNYV
                     PEPEKIEAGVKILAEEIERAWAESH"
     gene            complement(9854..10327)
                     /locus_tag="OQQ76_002547"
     CDS             complement(9854..10327)
                     /locus_tag="OQQ76_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1969010.1"
                     /translation="MNRFIIADATKCIGCRTCEVACAVSHQENQDCAALSPDEFISRI
                     RVIKDHSWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFG
                     AVEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV"
     gene            complement(10429..11277)
                     /gene="yiaJ"
                     /locus_tag="OQQ76_002548"
     CDS             complement(10429..11277)
                     /gene="yiaJ"
                     /locus_tag="OQQ76_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator YiaJ"
                     /protein_id="HCS1969011.1"
                     /translation="MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCP
                     LAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH
                     IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGILRTRAYIGQHMPLYCSAMG
                     KIYMAFGHPDYVKSYWENHQHEIQPLTRNTITELPAMFDELAHIRENGAAMDGEENEL
                     GVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRD
                     DLGAIT"
     gene            11478..12467
                     /gene="yiaK"
                     /locus_tag="OQQ76_002549"
     CDS             11478..12467
                     /gene="yiaK"
                     /locus_tag="OQQ76_002549"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HCS1969012.1"
                     /translation="MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSH
                     GVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAA
                     DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI
                     VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRI
                     LPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPT
                     RDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKI"
     gene            12488..12956
                     /locus_tag="OQQ76_002550"
                     /pseudo
     CDS             12488..12956
                     /locus_tag="OQQ76_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
     gene            13074..13547
                     /gene="yiaM"
                     /locus_tag="OQQ76_002551"
     CDS             13074..13547
                     /gene="yiaM"
                     /locus_tag="OQQ76_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate TRAP transporter small
                     permease YiaM"
                     /protein_id="HCS1969013.1"
                     /translation="MKKILEAILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYL
                     FVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLK
                     TIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA"
     gene            13550..>14532
                     /locus_tag="OQQ76_002552"
     CDS             13550..>14532
                     /locus_tag="OQQ76_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HCS1969014.1"
                     /translation="MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMA
                     QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAM
                     IMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFG
                     VSSGLSISKLFMAGIALGMMMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIW
                     ALFLSVIIIGGFRSGLFTPTEAGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTS
                     VVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAILIVG"
BASE COUNT         3608 a         3596 c         3640 g         3688 t
ORIGIN      
        1 ttctactcac cctttgcacc tcacttctgc ttaccaacgt tgcggcacac gccaaagaag
       61 tcaaaatagg tatggcgatt gatgatctac gtcttgaacg ctggcaaaaa gatcgagata
      121 tttttgtgaa aaaggctgaa tctctcggtg cgaaagtatt tgtacagtct gcaaatggca
      181 atggagaaac acaaatgtcg cagattgaaa acatgattaa ccggggtgtc gatgttcttg
      241 tcattattcc gtataacggc caggtattaa gtaacgttgt aaaagaagcc aaacaagaag
      301 gtattaaagt attagcttac gaccgtatga ttaacgatgc ggatatcgat ttttatattt
      361 ctttcgataa cgaaaaagtc ggtgaactgc aggcaaaagc cctggtcgat attgttccgc
      421 aaggtaatta cttcctgatg ggcggctcgc cggtagataa caacgccaag ctgttccgcg
      481 ccggacaaat gaaagtgtta aaaccttacg ttgattccgg aaaaattaaa gtcgttggtg
      541 accaatgggt tgatggctgg ttaccggaaa acgcgctaac cgccaataat aacaaaattg
      601 atgctgtagt tgcctcaaac gatgccaccg caggtggggc aattcaggca ttaagcgcgc
      661 aaggtttatc agggaaagta gcaatttccg gccaggatgc ggatctcgca ggtattaaac
      721 gtattgctgc cggtacgcaa actatgacgg tgtataaacc tattacattg ctggcaaata
      781 ctgccgcaga aattgccgtt gaattgggca atggtcagga gccaaaagca gatacctcac
      841 tgaataatgg cctgaaagat gtcccctccc gcctcctgac accgatcgat gtgaataaaa
      901 acaacatcaa agatacggta attaaagacg gattccacaa agagagcgag ctgtaagcgt
      961 tacgccccgg cgcggagcgg gggcgtgatt tctctccatg ccgcgtgaat gaattggctt
     1021 aggtggagtc gttatgcctt atctacttga aatgaagaac attaccaaaa ccttcggcag
     1081 tgtgaaggcg attgataacg tcagcttgcg gttgaatgct ggcgaaatcg tctcactctg
     1141 tggggaaaat gggtctggta aatcaacgct gatgaaagtg ctgtgtggta tttatcccca
     1201 tggctcttac gaaggcgaaa ttatttttgc gggagaagag attcaggcga gtcacatccg
     1261 cgataccgaa cgcaaaggta tcgccatcat tcaccaggaa ttggccctgg tgaaagaatt
     1321 gaccgtgctg gaaaatatct tcctgggtaa cgaaataacc cacaatggca ttatggatta
     1381 tgacctgatg acgctacgct gtcagaagct gctcgcacag gtcagtttat ccatttcacc
     1441 tgatacccgc gttggcgatt tagggcttgg gcaacaacaa ctggttgaaa ttgccaaggc
     1501 acttaataaa caggtgcgct tgttaattct cgatgaaccg acagcctcat taactgagca
     1561 ggaaacgtcg gttttactgg atattattcg cgatctacaa cagcacggta tcgcctgtat
     1621 ttatatttcg cacaaactca acgaagtcaa agcgatttcc gatacgattt gcgttattcg
     1681 cgacggtcag cacattggta cgcgtgatgc tgccggaatg agtgaagacg atattatcac
     1741 catgatggtc gggcgagagt taaccgcgct ttaccctaat gaaccacata ccaccggaga
     1801 tgaaatatta cgtattgaac atctgacggc atggcatccg gttaatcgtc atattaaacg
     1861 agttaatgat gtctcgtttt ccctgaaacg tggcgaaata ctgggtattg ccggactcgt
     1921 tggtgccgga cgtaccgaga ccattcagtg cctgtttggc gtgtggcccg gacaatggga
     1981 aggaaaaatt tatattgatg gcaaacaggt agatattcgt aactgtcagc aagccatcgc
     2041 ccaggggatt gcgatggtac ccgaagacag aaagcgcgac ggcatcgttc cggtaatggc
     2101 ggttggtaaa aatattaccc tcgccgcact caataaattt accggtggca ttagccagct
     2161 tgatgacgcg gcagagcaaa aatgtattct ggaatcaatc cagcaactca aagttaaaac
     2221 gtcgtccccc gatcttgcta ttggacgttt gagcggcggc aatcagcaaa aagcgatcct
     2281 cgcccgctgt ctgttactca acccgcgcat tctcattctt gatgaaccta ccaggggtat
     2341 tgatattggc gtgaaatatg agatctacaa attaattaac caactcgtcc agcagggtat
     2401 tgctgttatt gtcatctctt ctgaattacc tgaagtgctc ggccttagcg atcgtgtact
     2461 ggtgatgcat gaagggaaac taaaagccaa cctgataaat cataacctga ctcaggagca
     2521 ggtgatggaa gccgcattga ggagcgaaca tcatgtcgaa aagcaatccg tctgaagtga
     2581 aattggccgt accgacatcc ggtggctttt ccgggctgaa atcactgaat ttgcaggtct
     2641 tcgtgatgat tgcagctatc atcgcaatca tgctgttctt tacctggacc accgatggtg
     2701 cctacttaag cgcccgtaac gtctccaacc tgttacgcca gaccgcgatt accggcatcc
     2761 tcgcggtagg aatggtgttc gtcataattt ctgctgaaat cgacctttcc gtcggctcaa
     2821 tgatggggct attaggtggc gtcgcggcga tttgtgacgt ctggttaggc tggcctttgc
     2881 cacttaccat cattgtgacg ttggttctgg gactgcttct cggtgcgtgg aacggatggt
     2941 gggtcgcgta ccgtaaagtc ccttcattta ttgtcaccct cgcgggcatg ttggcatttc
     3001 gcggcatact cattggcatc accaacggca cgactgtatc ccccaccagc gccgcgatgt
     3061 cacaaattgg gcaaagctat ctccccgcca gtatcggctt catcattggc gcgcttggct
     3121 taatggcttt tgttggttgg caatggcgcg gaagaatgcg ccgtcaggct ttgggtttac
     3181 agtctccggc ctctaccgca gtagtcggtc gccaggcttt aaccgctatc atcgtattag
     3241 gcgcaatctg gctgttgaat gattaccgtg gcgttcccac tcctgttctg ctgctgacgt
     3301 tgctgttact cggcggaatg tttatggcaa cgcggacggc atttggacga cgcatttatg
     3361 ccatcggcgg caatctggaa gcagcacgtc tctccgggat taacgttgaa cgcaccaaac
     3421 ttgccgtgtt cgcgattaac ggattaatgg tagccatcgc cggattaatc cttagttctc
     3481 gacttggcgc tggttcacct tctgcgggaa atatcgccga actggacgct attgcagcat
     3541 gcgtgattgg cggcaccagc ctggctggcg gtgtgggaag cgttgccgga gcagtaatgg
     3601 gggcatttat catggcttca ctggataacg gcatgagtat gatggatgta ccgaccttct
     3661 ggcagtatat cgttaaaggt gcgattctgt tgctggcagt atggatggac tccgcaacca
     3721 aacgccgttc ttgattttga taaaaatttt ctcaaagccg gttacgtatt accggttttg
     3781 agtttttgca tgattcagca ggaaaagaac catgtttact aaacgtcacc gcatcacatt
     3841 actgttcaat gccaataaag cctatgaccg gcaggtagta gaaggcgtag gggaatattt
     3901 acaggcgtca caatcagaat gggatatttt cattgaagaa gatttccgcg cccgcattga
     3961 taaaatcaag gactggttag gagatggcgt cattgccgac ttcgacgaca aacaaatcga
     4021 gcaagcgctg gctgatgtcg acgtccccat tgttggggtt ggcggctcgt atcaccttgc
     4081 agaaagttac ccacccgttc attacattgc caccgataac tatgcgctgg ttgaaagcgc
     4141 atttttgcat ttaaaagaga aaggcgttaa ccgctttgct ttttatggtc ttccggaatc
     4201 aagcggcaaa cgttgggcca ctgaacgcga atatgcattt cgtcagcttg tcgccgaaga
     4261 aaagtatcgc ggagtggttt atcaggggtt agaaaccgcg ccagagaact ggcaacacgc
     4321 gcaaaatcgg ctggcagact ggctacaaac gctgccaccg caaaccggga ttattgccgt
     4381 tactgacgcc cgggcgcggc atattctgca agtatgtgaa catctacaca ttcccgtacc
     4441 ggaaaaatta tgcgtgattg gcatcgacaa cgaagaactg acccgctatc tgtcgcgtgt
     4501 cgccctttct tcggtcgctc agggcgcgcg gcaaatgggc tatcaggcgg caaaactgtt
     4561 gcatcgatta ttagataaag aagaaatgcc gctacagcga attttggtcc cacctgttcg
     4621 cgtcattgaa cggcgctcaa cagattatcg ctcgctgacc gatcccgccg ttattcaggc
     4681 catgcattac attcgtaatc acgcctgtaa agggattaaa gtggatcagg tactggatgc
     4741 ggtcgggatc tcgcgctcca atcttgagaa gcgttttaaa gaagaggtgg gtgaaaccat
     4801 ccatgccatg attcatgccg agaagctgga gaaagcgcgc agtctgctga tttcaaccac
     4861 cttgtcgatc aatgagatat cgcaaatgtg cggttatcca tcgctgcaat atttctactc
     4921 tgtttttaaa aaagcatatg acacaacgcc aaaagagtat cgcgatgtaa atagcgaggt
     4981 catgttgtag cgatgatgag aattgtcggc gtcacatcag ggaactcagc acagccacct
     5041 gatgcgagca aaagccttat ccgaccgaca aatcagataa ggctcaagga aatgcaatta
     5101 catatgcgcc gcgattaacc gttggttatc ctggtacatt gcgaacaggt agttattata
     5161 actcttccct ttggtcgagt agcccttcag cttgtgaatc atcgctgtgg cagtcacttc
     5221 ctgatccgct ttacgcagct gcgcacgcga tttacggaac gaagagtaag ccgggtgcgt
     5281 attcaggtta gtgacatagg cgctcaccga ttctttgaca gaactaaact gtgagtaccc
     5341 tttcacttta cccggcgcat tggtacaacg tcctttcatg catttcatgc cgaacagatt
     5401 gttattgttg cgcgccagct tcgacgttcc ccaaccgctt tctgctgcag ccatcgtcgc
     5461 caccatactg gtagggataa tgtctacgcg ttcaagcaag gtattccacg ggatttttcg
     5521 cgtattacca gaccacttca ccttgtagcg tttggcgatg tctttcagac gcgcacgctc
     5581 agcaggtgac cattggccct gatactgttt tgaaatcagc cagttacgtt ctgcagtaat
     5641 ggctgcattt tggctggtaa tgtaaggcat tacggtccgg agaaacgcct ttttccttgg
     5701 tgttccggaa gggtattttc gcaaatcagg aagtgaacta ctctttgcac tattgcgaga
     5761 atactcttgt ttactgctta cctgtttatt actagcttta gttaagtggg acttttgact
     5821 cgctgttgtt gtgtgcgtct tcgctaacac ctcactcgaa aacaccagag tgagtaacat
     5881 aagaatcatc gccccatatc gtcgtatggg agtcaaaatc atcaggtctc ctggtcggat
     5941 ttaatcattc caacacctta tatttttcac aaatttgaga gttgaatctc aaatcatatc
     6001 aaaaatagct gtcaagagca ccccaaggaa tagtccaaat ctgaaactat gtcacgagtt
     6061 aacgattcag attggcgcta aatcgcagaa aatgtggggt ttatcgcaaa attcagccgt
     6121 tttttgcgcg cgatcgctca cccttgcttc tcatcctgtg gacttaccgc tcagggatga
     6181 gttttgtctg gcttatcgct ggcaaactgt ctgaaatcgc agcaataagg actcatccac
     6241 catgaaactc gcctcctgtt ttctgacact ccttcctggc ttcgccgttg ccgccagctg
     6301 gacttctccg gggttccctg tctttagcga acagggaacg ggaacatttg tcagccacgc
     6361 gcagttgccc aaaggtacgc gtccactcac gctaaatttt gaccaacagt gctggcagcc
     6421 tgcagatgcg ataaaactca atcagatgct ttccctgcaa ccttgtagca acacgccgcc
     6481 tcaatggcga ttgttcaggg acggcaaata tacgctgcaa atagacaccc gctccggtac
     6541 gccaacattg atgatttcca tccagaacgc cgccgaagcg gtagcaaacc tggtccgtga
     6601 atgcccgaaa tgggatggat taccgctcac gctggatgtc agcgccactt tcccggaagg
     6661 agccgccgta cgggattatt acagccagca aattgcgata gtgaagaacg gtcaaataac
     6721 gttacaaccc gctgctacca gcaacggttt actcctgctg gaacgggcag aaactgacac
     6781 atccgcccct ttcgactggc ataacgccac ggtttacttt gtgctgacag atcgtttcga
     6841 aaacggcgat cccagtaatg accagagtta cggacgtcat aaagacggta tggcggaaat
     6901 tggcactttt cacggcggcg atttacgcgc cctgatcaat aaactggatt acctccagca
     6961 gttgggcgtt aatgctttat ggataagcgc cccatttgag caaattcacg gctgggtcgg
     7021 cggcggtaca aaaggcgatt tcccgcatta tgcctaccac ggttattaca cacaggactg
     7081 gacgaatctt gatgccaata tgggcaacga agccgatcta cggacgctgg ttgatagcgc
     7141 acatcagcgc agtattcgta ttctctttga tgtcgtgatg aaccacaccg gctatgccac
     7201 gctggcggat atgcaggagt atcagtttgg cgcgttatat ctttctggtg acgaagtgaa
     7261 aaaaacgctg ggtgaacgct ggagcgactg gaaacctgcc gccgggcaaa cctggcatag
     7321 ctttaacgat tacattaatt tcagcgacaa aacaggctgg gataaatggt ggggaaaaaa
     7381 ctggatcaga acggatatcg gcgattacga caatcctgga ttcgacgatc tcactatgtc
     7441 gctggccttt ttgccggata tcaaaaccga atcaactacc gcttctggtc tgccggtgtt
     7501 ctataaaaac aaaacggata ctcacgctaa agtcatcgaa ggctttacac ctcgcgatta
     7561 cttaacccac tggttaagtc agtgggtccg cgactatggg attgatggtt ttcgggtcga
     7621 taccgccaaa catgttgagt tgcccgcctg gcagcaactg aaaaccgaag ccagctccgc
     7681 gcttcgcgaa tggaaaaaaa ctaaccccga caaagcatta gatgacaaac ctttctggat
     7741 gaccggtgaa gcctggggcc acggcgtgat gcaaagtgac tactatcgcc acggcttcga
     7801 tgcgatgatc aatttcgatt atcaggagca ggcggcgaaa gcagtcgatt gtctggcgca
     7861 gatggatacg acctggcagc aaatggcgga gaaattgcag ggtttcaacg tgttgagcta
     7921 cctctcgtcg catgataccc gtctgttccg tgaagggggc gacaaagcag cagagttatt
     7981 actattagcg ccaggcgcgg tacaaatctt ttatggcgat gaatcctcgc gtccgttcgg
     8041 tcctacaggt tctgatccgc tgcaaggtac acgttcggat atgaactggc aggatgttag
     8101 cggtaaatct gccgccaacg tcgcgcactg gcagaaaatc agccagttcc gcgcccgcca
     8161 tcccgcaatt ggcgcgggca aacaaacgac actttcgctg aagcagggct acggctttgt
     8221 tcgtgagcat ggcgacgata aagtgctggt catctgggct gggcaacagt gacttttccg
     8281 gcttcccgtt catcagtacc tcgggaagcc gccaaccagg ataaaatgtc agccctaatc
     8341 agcgttgcag gataaagcac cgctcactct tcaacagacc gatttgcacc ccagcaaatg
     8401 tagcgttatt gttaccttcc ttgctacaga gttcgacaga tatcccgcta tgacattctc
     8461 cctttttggt gacaaattta cccgccactc cggcattacg ctgctgatgg aagatctgaa
     8521 cgacggttta cgcacgcctg gcgcgattat gctcggcggc ggtaatccgg cgcagatccc
     8581 ggaaatgcag gactacttcc agacgctact caccgacatg ctggaaagtg gcaaagcgac
     8641 tgatgcactg tgtaactacg acggtccaca ggggaaaacg gagctactca cactgcttgc
     8701 cggaatgctg cgcgagaagt tgggttggga tatcgaacca cagaatattg cactaacaaa
     8761 cggcagccag agcgcgtttt tctacttatt taacctgttt gccggacgcc gtgccgatgg
     8821 tcgggtcaaa aaagtgctgt tcccgctggc accggaatac attggctacg ctgacgccgg
     8881 actggaagaa gatctgtttg tctctgcgcg tccgaatatt gaactgctgc cggaaggcca
     8941 gtttaaatac cacgtcgatt ttgagcatct gcatattggc gaagaaaccg ggatgatttg
     9001 cgtctcccgg ccgacgaatc caacaggcaa tgtgattact gacgaagagt tgctgaagct
     9061 tgacgcgctg gcgaatcaac acggcattcc gctggtgatt gataacgctt atggcgtccc
     9121 gttcccgggt atcatcttca gtgaagcgcg cccgctatgg aatccgaata tcgtgctgtg
     9181 catgagtctt tccaagctgg ggctgcctgg ctcccgctgc ggcattatca tcgccaatga
     9241 aaaaatcatc actgccatca ccaatatgaa cggcattatc agcctggcac ctggcggtat
     9301 tggtccggcg atgatgtgtg aaatgattaa gcgtaacgat ctgctgcgcc tgtctgaaac
     9361 agtcatcaaa ccgttttact accagcgtgt tcaggaaact atcgccatca ttcgccgcta
     9421 tttaccggaa aatcgctgcc tgattcataa accggaagga gccattttcc tctggctatg
     9481 gtttaaggat ttgcccatta cgaccgagca gctctatcag cgcctgaaag cacgcggcgt
     9541 gctgatggtg ccggggcaca acttcttccc gggactggat aaaccgtggc cgcatacgca
     9601 tcaatgtatg cgcatgaact acgtaccaga gccggagaaa attgaggcgg gggtgaagat
     9661 tctggcggaa gagatagaaa gagcctgggc tgaaagtcac taaaaattgc ctgatgcgct
     9721 acgcttatca ggcctacatg atttctgcaa tatattgaat ttggaagaat ttgtaggccg
     9781 gataaggcgt ttacgccgca tctggcataa acaaaacgca ctattccggc gttgagaaac
     9841 gccggaaaac gtttcaaaca ggctgctgcc gtagccgatg ccgctgcact ttctcgacat
     9901 ccatgcactg caacgccttt gtcgggcagg cttcaacaca ggccggcccc gtctcccgat
     9961 gccagcacag atcgcactta atcgccctcg cctttttgcg cgaagaaacg acctccaccg
    10021 caccaaacgg gcaagccagc atacagcttt tacagccaat gcaacgtgtt tgttcaacga
    10081 aaatatgccc atgttcgcgg cttatcgcgt caacagggca gacattcgcg cacggtgcat
    10141 cttcacactg atgacaggct actgccgtgg tccagctgtg gtctttaatg acacgaatac
    10201 gggaaataaa ctcgtctggt gacaacgcag cgcaatcctg attctcctga tgcgacactg
    10261 cgcaagccac ttcacaggta cggcaaccga tacatttcgt cgcatccgca ataataaacc
    10321 ggttcatgat cactcctttg cactaaaaca gcagagtgcc agagagcgcg tccctactgc
    10381 tttgatccaa cgaaggaaat gttaaagttt tggcacttgt ccaaagcgtt atgtgatcgc
    10441 gcccaggtca tccctgacag taaatcccag ttcattagaa atagcctgcg cggtttcacg
    10501 cagtggtttc aggagatttt tctctcccac ctgtttcaga cgtgatgtcg aaagcgaaat
    10561 cgacacggcg tacggcaccc gcccatgaat atcaaacacc ggaacagcaa tacaggagac
    10621 gccgagttcg ttttcttctc cgtccatcgc cgctccgttt tcacgaatgt gcgccagttc
    10681 gtcgaacatc gcgggcagct cggtaatggt attgcgggtt aacggctgga tctcatgctg
    10741 atggttttcc cagtatgact tcacgtagtc cgggtgacca aacgccatgt agatcttgcc
    10801 cattgcggaa cagtagagcg gcatatgctg gccaatatag gcacgggttc gcagtatccc
    10861 ggttgtgggt tccagcttat aaatcaaaat agcgtgatcg tcttcgcggc tggagaagtt
    10921 aatggtttca ccagtggcga tgttcagtgc ctcaagatgc ggagcggcga tatgaatgat
    10981 attcagcgaa gacagcgcct tctgcccgac ggcaataaat ttggtagtca ggcggtaact
    11041 ccctgcggcg ggcgcggtgg tcacatagcc gcaggactgt aatccctgca ataagcgatg
    11101 gacggtactc ttatttaaac cagccagctc cgaaagatgc gccaacggac aaccgtttgg
    11161 atagttgctc aaaatctcaa tcagcatcaa cccgcgaaac agactctggc ttccggctgg
    11221 acgctctttt tcctgcgcca tctcgttctc tttttttccc atcacttctt tccccatttt
    11281 gtcgcgtcct gatggtagcg caaagtgtgc cgtagttcac gatctcgaca gataatttat
    11341 aaccacttga tttttatgtc ttttgaaatt catcaatcag atttctttgt taaaaagtga
    11401 tcgatatatt tgaaatcaag tttcgcatat tgaaatttta agccaaaaaa gcgatcaaaa
    11461 aaacaaggaa gcctgggatg aaagtgacat ttgagcagtt aaaagcagcc tttaatcggg
    11521 tcttaatttc acgcggcgtt gacagcgaaa cggctgacgc ctgtgcagag atgttcgccc
    11581 gcaccaccga atccggcgtt tattctcacg gcgttaatcg tttccctcgt ttcattcaac
    11641 aactggaaaa cggcgatatc attcctgatg cccaacccaa acgtataacc agcctcggcg
    11701 caattgaaca gtgggatgcc cagcgttcga tcggcaacct gacggcgaaa aagatgatgg
    11761 atcgcgccat tgaactggct gccgatcacg gtattggtct ggtggcactt cgtaatgcca
    11821 accactggat gcgcggcggc agctacggct ggcaggcggc ggaaaaaggc tatattggca
    11881 tttgctggac caactccatc gccgtaatgc cgccgtgggg cgcaaaagag tgtcgcattg
    11941 gcactaaccc gctgatcgtc gccattcctt ccacgccgat caccatggtc gatatgtcga
    12001 tgtcgatgtt ctcttacggc atgttagaag ttaaccgcct ggcgggccgt cagctcccgg
    12061 tcgatggtgg ctttgatgat gagggcaatt tgaccaaaga acctggcgtt atcgagaaga
    12121 atcgccgcat tttgccgatg ggctactgga aaggttctgg catgtcgatt gtgctggata
    12181 tgatcgctac tctcctttcc gacggcgcat cggttgccga agtcacccag gacaacagcg
    12241 acgaatacgg catttcacaa atttttattg ccattgaagt ggacaagctt atcgacggtc
    12301 ccacccgcga tgccaagctg caacgcatca tggattacgt tactaccgct gaacgcgctg
    12361 acgaaaacca ggccatccgc ttacccggcc acgaatttac taccctgctg gccgaaaacc
    12421 gccgtaacgg catcactgtt gatgacagcg tgtgggccaa aatctaggcg ttatgaggag
    12481 ataagtcatg atttttggac atatcgcgca gcccaatccg tgccgtttgc ccgccgccat
    12541 tgaaaaggcg ctcgattttc tgcgcgctac caacttcaac gtcctggagc cgggcgttgt
    12601 cgaaatcgac ggcaagaata tttatgcgca aattatcgat ttaaccacac gcgaagcggt
    12661 ggaaaactgt ccggaagtgc atcgtcggta tatcgatatt cagtttctgg cgtggggtca
    12721 agagaaaatc ggcattgcta ttgatacagg aaataataaa gtcagcgaat cactattaga
    12781 gcagcgcgat attatttttt atcatgtcag tgaacatgaa tcatttatag aaatgatacc
    12841 gggcagctac gctattttct tcccgcagga tgttcaccga ccaggttgta ttctgaaaac
    12901 aggcctctga gatacgaaaa attgtggtta aagtcgcatt aacagcgctg aattaatcaa
    12961 ataatcgtct acgccagaac gactgggtaa tgttattgct ctaactatat taataattta
    13021 ggttgctgca catgcaactt gaattatgac agacatagcc tcaaggaata gctatgaaaa
    13081 aaatacttga agcaatactg gcgattaatc tcgccgtact ttcctgtatt gtgtttataa
    13141 acattatttt aagatatggt tttcagacaa gcattttatc tgtagatgaa ttgtcacgtt
    13201 atttatttgt ctggttaaca tttattggcg cgattgtggc ttttatggat aacgcccacg
    13261 ttcaggtcac ctttctggtg gagaaactct cccccgcatg gcaacgacga gtcgctctgg
    13321 ttacccattc cttaatctta tttatttgtg gcgcactggc ctggggcgca acgctaaaaa
    13381 caattcagga ctggagcgat tattcaccga tcctcggttt gcccatcggc ctgatgtatg
    13441 ccgcttgtct gcccaccagc ctcgttatcg cattctttga actgcgtcat ttatatcaac
    13501 tcatcacgcg tagcaattct ctaacgtcgc caccgcaagg agcttaatca tggctgtgct
    13561 gatttttctg ggctgtctgt tgggtggtat tgctatcggt ttgcctattg cctgggcact
    13621 gttgttgtgc ggggcggcgt taatgttctg gctggacatg tttgatgtcc agatcatggc
    13681 acaaacgctg gtgaacggag ccgatagctt ctccctgctg gcgattccgt tctttgtgct
    13741 ggcgggtgaa atcatgaatg cgggcggctt gtcaaaacgc attgttgacc tgccgatgaa
    13801 actggtgggg cataaaccag gcgggctggg ctacgtcggc gtgctggcag ctatgattat
    13861 ggcgagcctt tctggttctg ccgttgcgga taccgccgcc gttgccgctc tactggtgcc
    13921 gatgatgcgc agcgccaact acccggtcaa ccgggcggcg gggctgattg cctctggcgg
    13981 cattatcgcg ccaattattc ccccttccat tccgtttatt atcttcggcg tttccagcgg
    14041 attatccatc agtaagctgt ttatggcggg cattgccctt ggcatgatga tgggcgcaac
    14101 gctgatgctt acctggtggt ggcaggccag tcgccttaat ttaccccgcc agcaaaaagc
    14161 aacgatgcag gaaatctggc actcttttgt ctccggtatc tgggctctgt ttctttcagt
    14221 catcattatt ggcgggtttc gctccggtct gtttacccct accgaagccg gggccgttgc
    14281 tgctttctat gcgctgtttg tcgccacagt tatttaccgt gaaatgacct tcgccacact
    14341 ttggcatgta ctcattggcg cggcgaaaac cacctcagtg gttatgtttc tggtggcctc
    14401 ggcacaagtt tccgcctggc tgattaccat tgctgaactg ccgatgatgg tttctgattt
    14461 actgcaaccg ttggtcgatt caccgcgtct gctgtttatc gtcattatgg tggctatcct
    14521 gattgtcggc at
//
LOCUS       DAJVUN010000100        14505 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.100, whole genome shotgun sequence.
ACCESSION   DAJVUN010000100 DAJVUN010000000
VERSION     DAJVUN010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14505
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.100"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..234)
                     /locus_tag="OQQ76_002553"
     CDS             complement(<1..234)
                     /locus_tag="OQQ76_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HCS1969015.1"
                     /translation="MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFL
                     AWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWN"
     gene            complement(443..518)
                     /locus_tag="OQQ76_002554"
     tRNA            complement(443..518)
                     /locus_tag="OQQ76_002554"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(483..485),aa:Ala,seq:ggc)
     gene            complement(558..633)
                     /locus_tag="OQQ76_002555"
     tRNA            complement(558..633)
                     /locus_tag="OQQ76_002555"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(598..600),aa:Ala,seq:ggc)
     gene            854..1213
                     /locus_tag="OQQ76_002556"
     CDS             854..1213
                     /locus_tag="OQQ76_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1969016.1"
                     /translation="MFKERMTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKA
                     RLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLL
                     REGIIGLLQGLGIRDSK"
     gene            1215..1607
                     /locus_tag="OQQ76_002557"
     CDS             1215..1607
                     /locus_tag="OQQ76_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416898.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HCS1969017.1"
                     /translation="MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGG
                     RARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTD
                     IEQEKVAQFLSREGIRNFLARLDIDESA"
     gene            complement(1658..3073)
                     /gene="gltX"
                     /locus_tag="OQQ76_002558"
     CDS             complement(1658..3073)
                     /gene="gltX"
                     /locus_tag="OQQ76_002558"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HCS1969018.1"
                     /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT
                     DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK
                     ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI
                     EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK
                     APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI
                     FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT
                     RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR
                     DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGR
                     TRSIERINKALAFIAERENQQ"
     gene            3333..3408
                     /locus_tag="OQQ76_002559"
     tRNA            3333..3408
                     /locus_tag="OQQ76_002559"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3366..3368,aa:Val,seq:tac)
     gene            3453..3528
                     /locus_tag="OQQ76_002560"
     tRNA            3453..3528
                     /locus_tag="OQQ76_002560"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3486..3488,aa:Val,seq:tac)
     gene            3533..3608
                     /locus_tag="OQQ76_002561"
     tRNA            3533..3608
                     /locus_tag="OQQ76_002561"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3566..3568,aa:Lys,seq:ttt)
     gene            3728..4069
                     /locus_tag="OQQ76_002562"
     CDS             3728..4069
                     /locus_tag="OQQ76_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlxA-like family protein"
                     /protein_id="HCS1969019.1"
                     /translation="MATISSTSIPSIQTQSSNRASQGSDVASQIARISQQIIKLTQQI
                     KEIVDTSGSAEDKQKQAELIQQQITLLETQLAQLQKQQAEKAQEKEQRLSLNVSLLNP
                     VEKTTHIDIYI"
     gene            complement(4060..4986)
                     /locus_tag="OQQ76_002563"
     CDS             complement(4060..4986)
                     /locus_tag="OQQ76_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1969020.1"
                     /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH
                     TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT
                     ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
                     AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN
                     IVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKHITPVVERQLMLVRRKNR
                     SLSTAAEALWDVVRDQGNALMAGREGDPLYQI"
     gene            5076..6074
                     /locus_tag="OQQ76_002564"
     CDS             5076..6074
                     /locus_tag="OQQ76_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HCS1969021.1"
                     /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL
                     LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF
                     LYLCTLPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGS
                     LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN
                     GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLGFNKADEITIVFCGSKKSLANG
                     IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA"
     gene            complement(6071..6289)
                     /locus_tag="OQQ76_002565"
     CDS             complement(6071..6289)
                     /locus_tag="OQQ76_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3820 family protein"
                     /protein_id="HCS1969022.1"
                     /translation="MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAG
                     KLGELMQITLLIKTEGLTQLVQPLKRPL"
     gene            complement(6291..8306)
                     /gene="ligA"
                     /locus_tag="OQQ76_002566"
     CDS             complement(6291..8306)
                     /gene="ligA"
                     /locus_tag="OQQ76_002566"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HCS1969023.1"
                     /translation="MESIEQQLTELRMTLRHHESLYHVMDAPEIPDAEYDRLMRELRE
                     LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL
                     KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
                     GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR
                     PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED
                     RPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT
                     GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL
                     SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD
                     VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTF
                     ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE
                     ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVFTGSLSQMSRDDAKARLVEL
                     GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS"
     gene            complement(8377..9363)
                     /gene="zipA"
                     /locus_tag="OQQ76_002567"
     CDS             complement(8377..9363)
                     /gene="zipA"
                     /locus_tag="OQQ76_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HCS1969024.1"
                     /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM
                     KSKRDDDYYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPR
                     QLVQQPPEAQVPPQHAPRPAQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA
                     QQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQ
                     AGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYG
                     DELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA"
     gene            9593..10354
                     /gene="cysZ"
                     /locus_tag="OQQ76_002568"
     CDS             9593..10354
                     /gene="cysZ"
                     /locus_tag="OQQ76_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HCS1969025.1"
                     /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG
                     GAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP
                     FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIP
                     GIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSL
                     FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR"
     gene            10539..11510
                     /gene="cysK"
                     /locus_tag="OQQ76_002569"
     CDS             10539..11510
                     /gene="cysK"
                     /locus_tag="OQQ76_002569"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HCS1969026.1"
                     /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR
                     IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK
                     LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE
                     IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGE
                     EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA
                     AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ"
     gene            11894..12151
                     /gene="ptsH"
                     /locus_tag="OQQ76_002570"
     CDS             11894..12151
                     /gene="ptsH"
                     /locus_tag="OQQ76_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HCS1969027.1"
                     /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA
                     KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE"
     gene            12196..13923
                     /gene="ptsI"
                     /locus_tag="OQQ76_002571"
     CDS             12196..13923
                     /gene="ptsI"
                     /locus_tag="OQQ76_002571"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HCS1969028.1"
                     /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVVRFL
                     SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA
                     AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA
                     ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL
                     ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG
                     TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM
                     DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRKEILRDQLRAILRASAFGKLRIMFPM
                     IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS
                     IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN
                     KFIEEKTIC"
     gene            13964..14473
                     /gene="crr"
                     /locus_tag="OQQ76_002572"
     CDS             13964..14473
                     /gene="crr"
                     /locus_tag="OQQ76_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HCS1969029.1"
                     /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE
                     KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE
                     GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLPGSVTVG
                     ETPVIRIKK"
BASE COUNT         3609 a         3712 c         3587 g         3597 t
ORIGIN      
        1 gttccacaga ttggtgcaaa acatcccgca taaaacggga acgacacctc gccagccaaa
       61 gataaacaag attgacagca ttacgcacag tggcatccac gccagaaaga tataactgga
      121 atggataatg gcaagtggcg aaataaaacg ggatagctga ataagtacca cggtgagcgt
      181 aaacgctagt gtgaatatct tgatattttt tatcaggtta tgctccacaa acatgagtac
      241 actactctca ctgatcgggg ttttcaggca cacaaataat aagtttattc gcatcgcgaa
      301 gcaaacaggg ggccagcctg ttgccgattt ttcatccaat gatgctttca ccaggcggca
      361 ctaacccgga cgtagactgt attacaaaag cggcaaaaag cagagacaaa aaacccccgc
      421 tttgcagcga gggttggaaa tttggtggag ctaagcggga tcgaaccgct gacctcttgc
      481 atgccatgca agcgctctcc cagctgagct atagccccac gatgcgttta cgtaccaaat
      541 ttgctgggtg caaaatttgg tggagctaag cgggatcgaa ccgctgacct cttgcatgcc
      601 atgcaagcgc tctcccagct gagctatagc cccgtcacgt aaagcttgtt gagttgacgg
      661 gcggcatcat atgaattccg cccgaatgtg tcaacggcaa attgcaacgt gtagtttcaa
      721 tcgctgaaaa atcaggcaaa tgaacaattt tggaaaaccg ctcgcattca gtagttattc
      781 atgtcacggt ttcctgtaaa gtggtgttat aaaatgaact actaatagac ccacatacat
      841 tcagggaatt gttatgttca aggagaggat gacaccagat gaacttgcca gactgaccgg
      901 ctatagccgc cagaccatta ataaatgggt acgcaaggaa ggctggacaa cgtcaccaaa
      961 acctggcgtc cagggtggca aagcccgact ggttcacgtc aatgaacagg ttcgtgaata
     1021 tattcgcaat gctgaacgtc cagaaggtca gggagaagcg cctgcccttt ctggtgatgc
     1081 gccgcttgaa gtattgctgg tgacactggc gaaagagatg acgccagttg aacaaaaaca
     1141 gtttacatcc ttgcttctgc gggaagggat tatcggattg ttacaaggct tagggattcg
     1201 cgatagcaaa taatatgaaa agattacgca ataaaatgac caccgaagaa ctggctgaat
     1261 gcctcggtgt ggctaaacaa actgttaacc gttggatcag agaaaaaggc tggaaaacgg
     1321 aaaaatttcc cggcgtgaaa ggcggtcgtg ccagacttat tctggtcgat acgcaagttt
     1381 gcgagtttat tcagaacacg ccagccttcc ataacacacc aatgttgatg gaagctgaag
     1441 agagaattgc tgaatacgct cctggagcac gcgccccggc gtatcgacaa atcatcaacg
     1501 cgatagataa tatgacagac attgagcagg aaaaagtcgc gcaatttttg tcacgtgaag
     1561 gaattcgcaa tttcctcgcc cgtctcgata ttgacgaatc agcataaata aaaaacggca
     1621 ggatattatc tcctgccgtt tatcttttat gcgctaatta ctgctggttt tcgcgttcag
     1681 caataaaagc cagcgctttg ttgatacgct cgatactgcg ggtcctacca attgcgtgaa
     1741 cggtaacatc cagtgccgga gactgccccg caccggttac ggcgacacgc agcggcatac
     1801 caactttacc catacccact tccagctcat ccgccgtcgc ctgaatagcg tgatgaacgt
     1861 tttcagcggt ccagtcagta atcgcggcca gtttgtcacg aaccacttcc agcggctgac
     1921 gcgctaccgg acgcagatgt tttttcgcgg cgtcggcatc gaactcagca aaatcttcgt
     1981 agaaataacg gcagctctgt gccatctctt tcagcgtctt gcagcgttcg cccagcagtt
     2041 tcaccagatc agccagctgc gggccgttac gggtatcgat attttcctgc tcaatgtgcc
     2101 actgtaagtg agtagcaaca tactccggcg gcagcgcgtt aatgtagtga tggttcagcc
     2161 acagcagctt gtcggtgttg aacgcactgg cagatttgct gacggcattc agggtgaagt
     2221 atttgatcat ctcttcacga gtgaagattt cctgatcgcc gtgggaccag cccagacgca
     2281 ccagatagtt cagcagtgct tctggcaaat aaccgtcatc acgatactgc attacgctga
     2341 ccgccccgtg acgtttggac agttttttac cgtcatcgcc gttgatcata gaaacgtgcg
     2401 cgtaaaccgg caccggcgct ttcagggcct taagaatgtt gatctggcgt ggcgtgttgt
     2461 tgatatggtc ttcgccacgg ataacgtggg tgatttccat atcccagtca tcgacaacca
     2521 cacagaagtt ataggttggg gaaccatcgg tacggcggat aataagatcg tccagttcct
     2581 ggttgctgaa ctcgatcgga ccacggatct gatcgtcaaa aacaacagaa ccttcctgcg
     2641 ggttagcaaa acgtacaacg cacggttcat catcagcgtg atgctcatgg ctgtggcggc
     2701 agcgaccgtc ataacgcggc ttctcacctt tcgccatttg ctcttcgcgc agcgcttcca
     2761 ggcgctcttt agagcaatag catttataag cagtgccctc ttccagcatc tgatcgatca
     2821 ccgcgttgta gcgatcaaaa cgtttggtct ggtagtacgg accttcatcc cactccaggc
     2881 tcagccagtt catgccatcc ataatggctt cgatagcttc cggcgtggaa cgctcaagat
     2941 cggtgtcttc aatacgcagc acgaactcac cgccgtggtt acgtgcaaaa agccaggagt
     3001 aaagagcagt acgcgcgccg ccaacgtgca gatagcctgt tgggcttggc gcgaagcgag
     3061 ttttgatttt catgaaatgg ccttacgttt agaaagatgc cgacaaccgg caaatcctgg
     3121 aaaaattgag tgggcgatat tctatcactc ccgcctgatt cctcaatgta gttcggattt
     3181 ctaccttacg cattattgtt ttcgttgaca aattgcgcaa cacggtctgt tttgcgatca
     3241 tcttgcttaa atttacgacg aacgaacaat ttctttagaa aatgcgttga ctcattttga
     3301 actttcccta taatgcgact ccacacagcg gggggtgatt agctcagctg ggagagcacc
     3361 tcccttacaa ggagggggtc ggcggttcga tcccgtcatc acccaccaac tactttatgt
     3421 agtctccgcc gtgtagcaag aaattgagaa gtgggtgatt agctcagctg ggagagcacc
     3481 tcccttacaa ggagggggtc ggcggttcga tcccgtcatc acccaccact tcgggtcgtt
     3541 agctcagttg gtagagcagt tgacttttaa tcaattggtc gcaggttcga atcctgcacg
     3601 acccaccaat gtaaaaaagc gccctaaagg cgctttttta ctatctgcga tttgtaagat
     3661 tgatttttct tctcaagttc cttgttcttc taccgatatt acctcgtaca gtgacgagga
     3721 ctgaacaatg gccactatct cttcaacttc aattccttcc atacaaacac agagtagtaa
     3781 cagggcatca caaggtagcg atgttgcttc acaaatcgcg cggataagtc agcaaatcat
     3841 caaactcact caacaaatta aagagattgt agacactagc ggcagtgctg aagacaagca
     3901 aaaacaggcc gaattgattc aacagcaaat caccctactg gaaacacaac tggcgcagtt
     3961 gcagaaacag caggcagaaa aggcgcagga gaaagagcag cgtttgtctc tgaatgtatc
     4021 ccttctaaat cctgttgaaa aaacgactca tatcgatatc tatatctgat acaacggatc
     4081 cccttcccga ccagccatta gcgcattgcc ctggtctcgt accacgtccc ataacgcttc
     4141 agcggcggtg gaaagtgaac ggttcttcct gcgcaccagc atcaactggc gttcaacaac
     4201 cggcgtaatg tgctttacca ccagtgggct accttcaggc aatggtagcg ccagtgcggg
     4261 aagaatactg atgccgatgc ctgcggctac catcgggaac agcgtcgccg gatgtccaat
     4321 ctcctgcaca atattcgcct gaataccatt gcgcgccagc gctgcgtcaa tcagcggtcg
     4381 gctgcctgac gcgtaatcct gcaacaccaa tttcgctccc tgtaatgcct gccagggtac
     4441 ataatcttcc acggccaaag cgctatcgcg atggcaaagc agaaagaaag gctcggaaag
     4501 aatcgcttca cattgcagat cgcccactgg gcctggatcg atgacgatgc caaagtcgac
     4561 atctccctgg cgaatacttt ccatcaccca ctgctgcgga cgatcgtgca ggacaaactg
     4621 aatatctgga tagcggcgat ggctttcagc aatgcattgc ggaataagat gcgcggaaat
     4681 ggtctggctg gcagcgaccc gaacttttcc gctcagttgt tgccccatac gcccggtatc
     4741 gcgcaacgtg ctgttaagtt catccagcag tcgctcaaga cgcaaagcca actgctgccc
     4801 tgcatctgta agcaccactt cacgcgtggt tctgtccagc aggcgaacac cagtatgatt
     4861 ttccagctcc ttcacactgt gacttactgc cgactggctc aagccgatac gctctcctgc
     4921 acgactaaaa cttttctcct gcgctactgt gacgaaaacc tttaattgtt ttaaagaata
     4981 attcatctgt tttcttcatg aatggatgca ataaatcaat tttatttctc aaactggaag
     5041 aagcacaata gaaccatcga tcatctggag tctttatgaa actttttcgt atcctcgatc
     5101 ctttcacctt aaccctgatc acggtggtgt tgctggcctc tttctttccg gccagaggcg
     5161 atttcgtccc cttctttgaa aatctgacca ccgcagctat tgccctgctg ttctttatgc
     5221 acggcgcgaa gttgtcgcgt gaggcgatta ttgctggcgg tggtcactgg cgactgcatt
     5281 tgtgggtaat gtgcagcacc ttcgtgctgt ttccgattct gggtgtactg tttgcctggt
     5341 ggaaaccggt aaatgtcgac ccgatgctct actccggttt tctctacttg tgcactctcc
     5401 cggctaccgt gcagtctgca atcgccttca cgtcaatggc gggcggtaac gtcgcggcgg
     5461 cggtttgttc tgcgtcagca tccagcctgc tggggatttt cctttcacca ttgctggttg
     5521 gtctggtgat gaatgttcac ggtgcagggg gcagccttga gcaggtcggt aaaattatgc
     5581 tgcaactgct gctgccgttt gtgttggggc atctttcccg gccgtggatt ggtgactggg
     5641 tgtcgcgcaa taaaaaatgg attgcgaaaa ctgaccagac gtccattctg ttggtggttt
     5701 atacagcgtt cagcgaagcc gtcgttaatg gtatctggca taaagttggc tggggatcat
     5761 tgctgtttat cgtggtggtc agctgcgttc ttctggctat cgtgattgta gttaacgtct
     5821 ttatggcacg ccgactgggc ttcaataagg cagatgaaat tactatcgtc ttttgtggtt
     5881 cgaaaaagag tctggcaaat ggcatcccga tggcaaacat tctgttcccc acatcggtga
     5941 tcggtatgat ggtgctgccc ctgatgattt tccatcagat ccaattgatg gtctgtgcgg
     6001 tgctggcgcg tcgatacaaa cgccagaccg aacagttaca ggcgcagcag gaaagcagcg
     6061 ccgataaagc ttaaagcgga cgcttcaggg gctggaccag ttgcgtcagc ccctcggttt
     6121 taatcagcag cgtgatttgc attagctcac cgagcttccc tgccgggaac tcatctttgc
     6181 gggcaaacca cagcagatac tcctccggca ggtcgattaa gcgacgccct ttgtatttgc
     6241 caaacggcat tatcgtattg gctatttcaa tcagctgctc tttttccatc tcagctaccc
     6301 agcaaacgca gcatttccgc ttcgtcgatg acttcaatgc ccagttcctg cgccttcgcc
     6361 agtttagatc ctgcagcttc acccgcaatc accagatcgg ttttcttcga cacgctgccc
     6421 gcgactttcg cgcccagttc gaccagtcga gctttagcgt catcacgcga catctggctt
     6481 aagctgcccg taaacaccac ggttttacca gcaaacgggc tgtcaatctc ttccgcgttg
     6541 ataacgatcg gcgcaggcca gtgaacacct tccgccaaca gctcgctgat gacattgcgg
     6601 ttgctttctt cggcaaagaa gttgtgaacg tgggatgcaa cgacaatgcc aacatcaggc
     6661 accttttgca gctcttcaat cgaagcggct tccagcgctt ccagcgtgcc gaaatatgcc
     6721 gccagacctg ctgcggtggc ctcgccgact tcacggatgc caagtgcata gaggaagcga
     6781 gcaaaggtgg tttctttcgc tttttccagc gcgttaacca cgttttgtgc cgattttggc
     6841 cccatacgct ccagtccggt cagtttgcct gcggtgagtt tgaacagatc tgccggagtg
     6901 tggacatatt ctttttcaac cagctgatcg atgattttgt cgcccattcc gtcaacatcc
     6961 atcgcacggc gggaaacaaa gtgtttcagc gactctttac gctgcgcacc gcaaatcagg
     7021 ccaccggtac agcgggcaac cgcttcacct tccacacgct caacgtcaga accacatacc
     7081 ggacaatgcg tcgggaatac aacctcacgg gtatcttccg ggcgttcaga aagcacgacg
     7141 ttaaccacct gcgggatcac gtcgccagcg cggcgaatca ccactttatc gccaatgcgt
     7201 aaaccaagac gttcgatttc atccgcattg tgtaaggttg cgttactcac cagcacgcca
     7261 gcaacatgga caggttccag acgcgcaaca ggcgtaatcg cgccagtacg cccaacctga
     7321 aactcgacgt cacgcacaaa ggtcatctgc tcctgcgccg ggaatttaaa cgctaccgcc
     7381 cagcgcgggg cacgcgcaac aaagccaagc tgctcctgct gttccagtga gttgacctta
     7441 atcaccacgc cgtcgatatc aaagcccagc gtcgggcggt cttcttccac tttgtgatag
     7501 aacgccagca cttcttccgc cgattcacaa agcgttaccc gatcgctgac cggcaacccc
     7561 cactttttaa attgcagtaa acggccaaga tgagtatccg gcagctcgcc accttccaga
     7621 acaccaacgc catagcagaa aaaagtgagc ggtcgcttcg ctgtaatacg cggatcaagc
     7681 tgacgcagtg aaccagctgc cgcattacgt gggttagcaa aaactttccc gcccgtgcgt
     7741 cgcgcatctt cgttaatctt ttcgaacccc gcctgcggca ggaacacttc accacgcact
     7801 tccagacgcg ccgggatatt ctctccatgc agcttcagcg gaatggcgcg aatagtacgc
     7861 acattagacg tgatatcttc cccggtggtg ccatcgccac gggtcgcggc actgactaaa
     7921 acgccatttt catacagaat actgacggca aggccatcca gcttcagctc acagcaccag
     7981 gtgactttct cgttgttttt cagacggtcc tgcacacgtt tgttgaaagc aagaaagctt
     8041 tcttcatcaa aaacgttatc cagtgacagc attggtactt catggcgtat ctggctgaaa
     8101 gccgccagcg gcgcagcacc tacacgttgg gtaggcgaat caggcgtaat cagttctgga
     8161 tgtttagttt ccagctcgcg cagttcgcgc atcagcctgt cgtattcagc gtcgggaatt
     8221 tccggcgcat ccatcacatg ataaagagat tcatgatggc gaagcgtcat tcgcagttct
     8281 gtcagttgtt gttcgattga ttccatatcg caccatcaat gctaaaaacc cccgacaagc
     8341 gggggttcga agaggagtta atttgcctta agtgtatcag gcgttggcgt ctttgacttc
     8401 gcggatgatg tcctggtact cgcgcaattt ctgcggagtc atcatacggc gctgatcgtc
     8461 aagcacgaca ccgcccactt catcggcaat atgctgcgca gattgcagca tcagcttgaa
     8521 gttctgcagc tcgtcaccgt aagacggtac ctgcataaag atagtgacac ccggagtagt
     8581 gaaatccttc atttcaggat caaaggttcc cggtttcacc atattcgcca ggctgaataa
     8641 cgccgggccg ctgccatccg ggctaagatg acgatggtaa atattcatat cgccaaaaat
     8701 gaagcccgct tgttgaatgc tgttaagaag cagttcaccg tttagctcgc taccgtgatg
     8761 cgccgcgacg ttcatgataa tcaccgcttc tttgcgcttc ggtttatcca taactggagc
     8821 cggttccgct acaggctcag gctgtggtgc cgctacgggt tctgcaggct ggaaagcctg
     8881 ttgtgccggt tgcggtgctg aatgcacagg ctgcggcgct ggcgcgacct gtggcgaaac
     8941 tggctgctgc aacggctgtt caggctgcgg ctgataggca ggctgctgca ccggctgcgc
     9001 tggacgcgga gcatgttgcg gcggtacctg cgcttcaggc ggctgctgga ccagttgacg
     9061 cggctgcgca gacgcataag gcggttggta ctggtgttgc ggcgacggac gagcagcctc
     9121 atgctcctga gcgttagccg gggcatgatt cacgcggtga acacgaacct caccaacgcc
     9181 ctcatcatct tcgacatcct cgtcataata atcgtcgtca cgttttgact tcattcgttt
     9241 taatggccga tcgcggaaca tagaagatcg ttctttacgg ctggtccaga aaccatgtac
     9301 cagtaaagcg attatggcga tcgcgccaac aatgattaat atcagacgca aatcctgcat
     9361 cattatattc tctgttgttc taacaccttg ccaccacggc aaacatttac tcactaagag
     9421 tatttgccga ttacctcaag tgcaagtgca ctattaactt tcacagcaca aagatagatg
     9481 aaatcgtgct ttttgctgtt ttttcgaaca tatcctaact gtccattgcg caattacccg
     9541 gtaaaatacg cagaattttc ctgggattgg tcaaaaggag ctcatcctga ttatggtttc
     9601 atcattcaca tctgccccac gcagcggttt ttactatttt gcgcaaggct ggaagctcgt
     9661 ctcgcaacct gggattcggc gtttcgttat tttaccgctg ctggtcaata ttttgttgat
     9721 ggggggcgca ttctggtggc tctttacaca gctcgatgtc tggatcccga ctctcatgag
     9781 ttacgttccg gactggctac aatggctgag ttatctgttg tggcctctgg ctgtcatctc
     9841 tgtgctgtta gtgtttggct atttcttctc cacgattgct aactggattg ccgctccgtt
     9901 taacggttta ttggctgaac aactggaagc acgattgact ggcgctacac cgccagatac
     9961 cgggattttc ggtatcatga aagatgtgcc gcgaatcatg aaacgcgaat ggcaaaaatt
    10021 tgcctggtat ctgccgcgcg caattgtatt actaattctt tacttcatcc ctggtattgg
    10081 gcaaaccgtc gcgccggtac tgtggttcct gtttagcgcc tggatgttag ccatccagta
    10141 ttgcgattac cccttcgata accacaaagt gccgtttaaa gagatgcgca ccgccctgcg
    10201 cacacgcaaa atcaccaata tgcagtttgg tgctttaacc agcctgttta cgatgatccc
    10261 gctgcttaat ctgttcatca tgcccgttgc cgtttgtggc gcgacggcga tgtgggtcga
    10321 ttgctatcgc gataaacacg cgatgtggcg gtaacaatct accggttatt ttgtaaaccg
    10381 tttgtgtgaa acaggggtgg cttatgccgc cccttattcc atcttgcatg tcattatttc
    10441 ccttctgtat atagatatgc taaatcctta cttccgcata ttctctgagc gggtatgcta
    10501 cctgttgtat cccaatttca tacagttaag gacaggccat gagtaagatt tttgaagata
    10561 actcgctgac tatcggtcac acgccgctgg ttcgcctgaa tcgcatcggt aacggacgca
    10621 ttctggcgaa ggtggaatct cgtaacccca gcttcagcgt taagtgccgt atcggtgcca
    10681 acatgatttg ggatgccgaa aagcgcggcg tgctgaaacc aggcgttgaa ctggttgaac
    10741 cgaccagcgg taataccggg attgcactgg cctatgtagc tgccgctcgc ggttacaaac
    10801 tcaccctgac catgccagaa accatgagta ttgaacgccg caagctgctg aaagcgttag
    10861 gtgcaaacct ggtgctgacg gaaggtgcta aaggcatgaa aggcgcaatc caaaaagcag
    10921 aagaaattgt cgccagcaat ccagagaaat acctgctgct gcaacaattc agcaatccgg
    10981 caaaccctga aattcacgaa aaaaccaccg gtccggagat ctgggaagat accgacggtc
    11041 aggttgatgt atttattgct ggcgttggga ctggcggtac gctgactggc gtcagccgct
    11101 acattaaagg caccaaaggc aagaccgatc ttatctctgt cgccgttgag ccaaccgatt
    11161 ctccagttat cgcccaggcg ctggcaggtg aagagattaa acctggcccg cataaaattc
    11221 agggtattgg cgctggtttt atcccggcta acctcgatct caagctggtc gataaagtca
    11281 ttggcatcac caatgaagaa gccatttcta ccgcccgtcg tctaatggaa gaagaaggta
    11341 ttcttgcagg tatctcttct ggagcagctg ttgccgcggc gttgaaacta caagaagatg
    11401 aaagctttac caacaagaat attgtggtta ttctaccatc atcgggtgag cgttatttaa
    11461 gcaccgcatt gtttgccgat ctcttcactg agaaagaatt gcaacagtaa tgccagcttg
    11521 ttaaaaatgc gtaaaaaagc acctttttag gtgctttttt gtggcctgct tcaaactttc
    11581 gcccctcctg gcattgattc agcctgtcgg aactggtatt taaccagact aattattttg
    11641 atgcgcgaaa ttaatcgtta caggaaaagc caaagctgaa tcgattttat gatttggttc
    11701 aattcttcct ttagcggcat aatgtttaat gacgtacgaa acgtcagcgg tcaacacccg
    11761 ccagcaatgg actgtattgc gctcttcgtg cgtcgcgtct attaaaaact ggcgctaaca
    11821 atacaggcta aagtcgaacc gacaggctag actttagttc cacaacacta aacctataag
    11881 ttggggaaat acaatgttcc agcaagaagt taccattaca gctccgaacg gtctgcacac
    11941 ccgccctgct gcccagtttg taaaagaagc taagggcttc acttctgaaa ttactgtgac
    12001 ttccaacggc aaaagcgcca gcgcgaaaag cctgtttaaa ctgcagactc tgggcctgac
    12061 tcaaggtacc gttgtgacta tctccgcaga aggcgaagac gagcaaaaag cggttgaaca
    12121 tctggttaaa ctgatggcgg aactcgagta atttcccggg ttcttttaaa aatcagtcac
    12181 aagtaaggta gggttatgat ttcaggcatt ttagcatccc cgggtatcgc tttcggtaaa
    12241 gctctgcttc tgaaagaaga cgaaattgtc attgaccgga aaaaaatttc tgccgaccag
    12301 gttgatcagg aagttgtacg ttttctgagc ggtcgtgcca aggcatcagc ccagctggaa
    12361 acgatcaaaa cgaaagctgg tgaaacgttc ggtgaagaaa aagaagccat ctttgaaggg
    12421 catattatgc tgctcgaaga tgaggagctg gagcaggaaa tcatagccct gattaaagat
    12481 aaacacatga cagctgacgc agctgctcat gaagttatcg aaggtcaggc ttctgccctg
    12541 gaagagctgg atgatgaata cctgaaagaa cgtgcggctg acgtacgtga tatcggtaag
    12601 cgcctgctgc gcaacatcct gggcctgaag attatcgacc tgagcgccat tcaggatgaa
    12661 gtcattctgg ttgccgctga cctgacgccg tccgaaaccg cacagctgaa cctgaagaag
    12721 gtgctgggtt tcatcaccga cgcgggtggc cgtacttccc acacctctat catggcgcgt
    12781 tctctggaac tgcctgctat cgtgggtacc ggtagcgtca cctctcaggt gaaaaatgac
    12841 gactatctga ttctggatgc cgtaaataat caggtttacg tcaatccaac caacgaagtt
    12901 attgataaaa tgcgcgctgt tcaggagcaa gtggcttctg aaaaagcaga gcttgctaaa
    12961 ctgaaagatc tgccagctat tacgctggac ggtcaccagg tagaagtatg cgctaacatt
    13021 ggtacggttc gtgacgttga aggtgcagag cgtaacggcg ctgaaggcgt tggtctgtat
    13081 cgtactgagt tcctattcat ggaccgcgac gcgctgccca ctgaagaaga acagtttgct
    13141 gcttacaaag cagtggctga agcgtgtggc tcgcaggcgg ttatcgttcg taccatggac
    13201 atcggcggcg acaaagagct gccatacatg aacttcccga aagaagagaa cccgttcctc
    13261 ggctggcgcg ctatccgtat cgcgatggat cgtaaagaga tcctgcgcga tcagctccgc
    13321 gctatcctgc gtgcctcggc tttcggtaaa ttgcgcatta tgttcccgat gatcatctct
    13381 gttgaagaag tgcgtgcact gcgcaaagag atcgaaatct acaaacagga actgcgcgac
    13441 gaaggtaaag cgtttgacga gtcaattgaa atcggcgtaa tggtggaaac accggctgcc
    13501 gcaacaattg cacgtcattt agccaaagaa gttgatttct ttagtatcgg caccaatgat
    13561 ttaacgcagt acactctggc agttgaccgt ggtaatgata tgatttcaca cctttaccag
    13621 ccaatgtcac cgtccgtgct gaacttgatc aagcaagtta ttgatgcttc tcatgctgaa
    13681 ggcaaatgga ctggcatgtg tggtgagctt gctggcgatg aacgtgctac acttctgttg
    13741 ctggggatgg gtctggacga attctctatg agcgccattt ctatcccgcg cattaagaag
    13801 attatccgta acacgaactt cgaagatgcg aaggtgttag cagagcaggc tcttgctcaa
    13861 ccgacaacgg acgagttaat gacgctggtt aacaagttca ttgaagaaaa aacaatctgc
    13921 taatccacga gatgcggccc aatttactgc ttaggagaag atcatgggtt tgttcgataa
    13981 actgaaatct ctggtttccg acgacaagaa ggataccgga actattgaga tcattgctcc
    14041 gctctctggc gagatcgtca atatcgaaga cgtgccggat gtcgtttttg cggaaaaaat
    14101 cgttggtgat ggtattgcta tcaaaccaac gggtaacaaa atggtcgcgc ctgtagacgg
    14161 taccattggt aaaatctttg aaaccaatca cgcgttctct atcgaatctg atagcggcgt
    14221 tgaactgttc gtccacttcg gtatcgacac cgttgaactg aaaggcgaag gcttcaagcg
    14281 tattgcagaa gaaggtcagc gcgtgaaagt tggcgatact gtcattgaat ttgatctgcc
    14341 gctgctggaa gagaaagcca agtctaccct gactccggtt gttatctcca acatggacga
    14401 aatcaaagaa ctgatcaaac tgcccggtag cgtaaccgtg ggtgaaaccc cggttatccg
    14461 catcaagaag taattcttgc cgcagtgaaa aatggcgccc atcgg
//
LOCUS       DAJVUN010000101        14453 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.101, whole genome shotgun sequence.
ACCESSION   DAJVUN010000101 DAJVUN010000000
VERSION     DAJVUN010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14453
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.101"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..472)
                     /gene="dpiB"
                     /locus_tag="OQQ76_002573"
                     /gene_synonym="citA"
     CDS             complement(<1..472)
                     /gene="dpiB"
                     /locus_tag="OQQ76_002573"
                     /gene_synonym="citA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415152.1"
                     /note="regulates the expression of citrate fermentation
                     genes; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
                     /protein_id="HCS1969030.1"
                     /translation="MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTAS
                     FEDYLTLHVRDMAMNQAKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVIGD
                     RHSIRLYHPNPEKIGYPMQFTKQGALEKGESYFITGKGSMGMAMRAKTPIFDDDG"
     gene            851..1909
                     /gene="citC"
                     /locus_tag="OQQ76_002574"
     CDS             851..1909
                     /gene="citC"
                     /locus_tag="OQQ76_002574"
                     /EC_number="6.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
                     /protein_id="HCS1969031.1"
                     /translation="MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTR
                     DEKLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYE
                     ALFRQCGFSTLTSVPGVMVLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNG
                     HRYLIQQAAAQCDWLHLFLVKEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISR
                     ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMR
                     YWLKTPTISAAPIELVEIERLRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQ
                     NLLEHSRQDAAARQKPPA"
     gene            1924..2220
                     /gene="citD"
                     /locus_tag="OQQ76_002575"
     CDS             1924..2220
                     /gene="citD"
                     /locus_tag="OQQ76_002575"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HCS1969032.1"
                     /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA
                     IRTTILDVLAHYNVRGVQLNVDDKGTLDCILRARLEALLARASGIPTLPWEDCQ"
     gene            2217..3125
                     /gene="citE"
                     /locus_tag="OQQ76_002576"
     CDS             2217..3125
                     /gene="citE"
                     /locus_tag="OQQ76_002576"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HCS1969033.1"
                     /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE
                     DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL
                     PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI
                     ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA
                     AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEAAAREGLGVVSLNG
                     KMVDGPVIDRARLVLSRAELSGIREE"
     gene            3136..4668
                     /gene="citF"
                     /locus_tag="OQQ76_002577"
     CDS             3136..4668
                     /gene="citF"
                     /locus_tag="OQQ76_002577"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HCS1969034.1"
                     /translation="MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDR
                     KLCANLEEAIHRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSD
                     CHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI
                     DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASI
                     EQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
                     GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA
                     QSLARNPNHIEISANQYANWGSKGASVDRLYVVVLSALEIDTQFNVNVLTGSDGVLRG
                     ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR
                     PELAERLPEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV
                     KE"
     gene            4672..5223
                     /gene="citX"
                     /locus_tag="OQQ76_002578"
     CDS             4672..5223
                     /gene="citX"
                     /locus_tag="OQQ76_002578"
                     /EC_number="2.7.7.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
                     /protein_id="HCS1969035.1"
                     /translation="MHLLPELASHHAVSIPELLVSRDERQARQHVWLKRHPVPLVSFT
                     VVAPGPIKDSEVTRRIFNHGVTALRALAAKQGWQIQEQAALVSASGPEGMLSIAAPAR
                     DLKLATIELEHSHPLGRLWDIDVLTPEGEILSRRDYSLPPRRCLLCEQSAAVCARGKT
                     HQLTDLLNRMEALLNDVDACNVN"
     gene            5198..6076
                     /gene="citG"
                     /locus_tag="OQQ76_002579"
     CDS             5198..6076
                     /gene="citG"
                     /locus_tag="OQQ76_002579"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
                     /protein_id="HCS1969036.1"
                     /translation="MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDR
                     INCGAHKDMALEDFHRSALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDM
                     FRATAGVNTHKGSIFSLGLLCAAIGRLLQLNQSLTPTTVCSTAASFCRGLTDRELRTN
                     NSQLTAGQRLYQQLALTGARGEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLL
                     LMAINGDTNVASRGGEGGLRWLQREAQTLLQKGGIRTLADLDYLRQFDRECIERNLSP
                     GGSADLLILTWFLAQI"
     gene            6127..6942
                     /locus_tag="OQQ76_002580"
     CDS             6127..6942
                     /locus_tag="OQQ76_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001785856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HCS1969037.1"
                     /translation="MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAM
                     IVGMILEPIPATAISFIAVTICIIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSST
                     TVWLVFGAFIFALGYEVSGLGLRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT
                     ARTGGTVFPVIKNLPPLFKSFPNDPSARHIGGYLMWMMVISTSLSSSMFVTGAAPNVL
                     GLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVAT"
     gene            6964..7590
                     /locus_tag="OQQ76_002581"
     CDS             6964..7590
                     /locus_tag="OQQ76_002581"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HCS1969038.1"
                     /translation="MGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLA
                     LHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATV
                     IVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLT
                     PYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN"
     gene            7701..8507
                     /gene="rna"
                     /locus_tag="OQQ76_002582"
     CDS             7701..8507
                     /gene="rna"
                     /locus_tag="OQQ76_002582"
                     /EC_number="4.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease I"
                     /protein_id="HCS1969039.1"
                     /translation="MKAFWRNAALLAVSLLPFSSANAVALQTKQYGDFDRYVLALSWQ
                     TGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFG
                     CATRPIPNLPEAHASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACF
                     GFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKL
                     TCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKVGY"
     gene            8737..9147
                     /gene="rnk"
                     /locus_tag="OQQ76_002583"
     CDS             8737..9147
                     /gene="rnk"
                     /locus_tag="OQQ76_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HCS1969040.1"
                     /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC
                     SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR
                     VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL"
     gene            complement(9378..10616)
                     /locus_tag="OQQ76_002584"
     CDS             complement(9378..10616)
                     /locus_tag="OQQ76_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent formaldehyde
                     dehydrogenase"
                     /protein_id="HCS1969041.1"
                     /translation="MKALTYHGPHHVQVENVPDPGIEQADDIILRITATAICGSDLHL
                     YRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRMQQYA
                     ACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL
                     SDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVD
                     HHPYRLSFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTET
                     VLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT
                     HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQS
                     AEAAQKAVSGLVNAMPGGTI"
     gene            10837..11265
                     /gene="uspG"
                     /locus_tag="OQQ76_002585"
     CDS             10837..11265
                     /gene="uspG"
                     /locus_tag="OQQ76_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspG"
                     /protein_id="HCS1969042.1"
                     /translation="MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSA
                     SLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE
                     ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR"
     gene            complement(11386..12951)
                     /gene="ahpF"
                     /locus_tag="OQQ76_002586"
     CDS             complement(11386..12951)
                     /gene="ahpF"
                     /locus_tag="OQQ76_002586"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017455864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HCS1969043.1"
                     /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA
                     ELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPS
                     KEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQ
                     NEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIV
                     GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH
                     VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGE
                     DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA
                     DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG
                     LLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS
                     LSAFDYLIRTKTA"
     gene            complement(13122..13685)
                     /gene="ahpC"
                     /locus_tag="OQQ76_002587"
     CDS             complement(13122..13685)
                     /gene="ahpC"
                     /locus_tag="OQQ76_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HCS1969044.1"
                     /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT
                     FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG
                     ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS
                     HPGEVCPAKWKEGEATLAPSLDLVGKI"
     gene            14057..>14453
                     /gene="dsbG"
                     /locus_tag="OQQ76_002588"
     CDS             14057..>14453
                     /gene="dsbG"
                     /locus_tag="OQQ76_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415137.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HCS1969045.1"
                     /translation="MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGM
                     KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRME
                     QSHWLLDGKKDAPVIVYVFADPFCPYCKQF"
BASE COUNT         3460 a         3809 c         3574 g         3610 t
ORIGIN      
        1 ttccatcgtc atcaaagatt ggcgttttgg cgcgcatcgc catccccatt gaccctttcc
       61 cggtaatgaa gtagctctcc cctttctcca gcgcgccctg tttggtgaac tgcataggat
      121 aaccaatttt ctccggatta ggatggtaaa ggcggatcga gtgccggtcg ccaatcacca
      181 cataatcaaa atcggtatct ctttgtaatt tgttagcgat ggtcgccagc cgtttgtagt
      241 cacgcgtttt caccgcagag atgacactgt cattggaggc aataattttc gcctgattca
      301 ttgccatgtc gcgtacatga agcgttaaat agtcctcaaa actggccgta aaatattgcg
      361 ccaaggctgc aatgacaaat attgagaaca ccagaatcag caaaaagata cgcagcggaa
      421 atgccagtct ttggaaaaat gcaaactgtt tattctcgtt aagctgcaac attgttttcc
      481 ttgcgggttg tcccgagcct ctttgacaga tgtaattaaa atgttgaatc aaaatacata
      541 gatattaatt atgatcgtta caaattttat tcattaaatc aattaaatca cttaaacctg
      601 caggtcattt cgtaattaca ttaattaaaa aacttaaacc attaaataaa taaaaaacca
      661 ctaaccctat gtgaaataaa tcaaaatttc acgccaaaat actccttagg atgtatagcg
      721 aaaggagaaa aagatatacc tcgatcaccc ccctttctcc caagtgaaaa taaaaggtta
      781 tcagtttgca acattgaaca acattcgttg caaatcgata acaacatgca ccttcaggat
      841 actatttatt atgttcggca atgatatttt cacccgcgta aaacgttcag aaaataaaaa
      901 aatggcggaa atcgcccaat tcctgcatga aaatgatttg agcgttgaca ccacagtcga
      961 agtatttatt accgtaaccc gcgatgaaaa gcttatcgcg tgcggtggaa ttgccggaaa
     1021 tattattaaa tgcgttgcta tcagtgaatc cgttcgcggt gaaggactgg cgctgacatt
     1081 agccactgaa ctgataaacc tcgcctatga gcggcacagc acgcatctgt ttatttatac
     1141 caaaaccgaa tacgaggcgc tgttccgcca gtgcggtttt tccacgctga ccagcgtacc
     1201 cggcgtgatg gtgctgatgg aaaacagcgc cacgcgactg aaacgctatg ccgaatcgct
     1261 gaaaaaattt cgtcatccag ggaacaagat tggctgcatt gtgatgaacg ccaatccctt
     1321 tacgaatggt caccgttatc tgattcaaca agctgcggca cagtgcgact ggttgcatct
     1381 gtttttagtc aaagaagatt cttcacgctt cccctatgaa gaccggctgg atctggtgtt
     1441 aaaaggcacc gccgatattc cacgcctgac tgtgcatcgc ggctccgaat acatcatctc
     1501 ccgcgctacg ttcccttgct acttcattaa agaacagagc gtcattaacc attgttacac
     1561 cgaaattgat ctgaagattt tccgtcagta cctcgctccc gcactgggtg taactcaccg
     1621 ctttgtcggt actgaaccct tttgtcgcgt taccgcccag tacaaccagg atatgcgcta
     1681 ctggctgaaa acgccgacta tctccgcagc gcccatcgaa ctggttgaaa ttgagcggct
     1741 gcgttaccag gagatgccga tatccgcttc ccgggtacgt caactgctgg cgaaaaacga
     1801 tctcacggct atcgcgccgc tggtccctgc agtcacgctg cattatttgc agaacctgct
     1861 tgagcactcc cgccaggacg cggcagctcg tcaaaagccc cccgcatgag aaacaggtga
     1921 aaaatgaaaa taaaccagcc cgccgttgca ggcacccttg agtctgggga tgtgatgata
     1981 cgcatcgccc cactcgatac gcaggatatc gacctgcaaa tcaacagcag cgttgagaaa
     2041 cagtttggcg atgcaattcg caccaccatt ctggacgttc tcgcccacta caacgtgcgc
     2101 ggcgtacagc tgaatgtcga tgacaaaggc acactggact gcattttacg tgcacgactg
     2161 gaagccctgc tggcacgcgc cagcggtatc ccgactctgc catgggagga ttgccaatga
     2221 tttccgcttc gctgcaacaa cgtaaaactc gcacccgccg cagcatgttg tttgtgcctg
     2281 gtgccaatgc cgcgatggtc agcaactcct tcatctaccc ggctgatgcc ctgatgtttg
     2341 acctcgaaga ctccgtggca ttacgtgaaa aagacaccgc ccgccgcatg gtttatcacg
     2401 cgctgcaaca tccgctgtat cgcgatattg aaaccattgt gcgtgtcaac gcgctggatt
     2461 ccgaatgggg tgttaacgac ctggaagccg tcgttcgcgg tggtgcggac gttgtgcgtc
     2521 tgccgaaaac cgataccgct caggatgttc tggatattga aaaagagatc ctgcgtatcg
     2581 aaaaagcctg tggtcgtgaa cccggcagca ccggcctgct ggcggcgatt gaatctccgc
     2641 tgggcattac ccgcgcagtg gaaatcgctc acgcttccga gcgtttgatc ggtatcgccc
     2701 taggtgcaga agactatgtg cgcaacctgc gtacagaacg ctccccggaa ggaactgaac
     2761 tgctgttcgc acgctgttcc attttgcagg ccgcgcgctc tgcgggtatt caggcgttcg
     2821 ataccgtcta ttccgacgct aacaacgaag ccggattcct gcaagaagcc gcccacatca
     2881 aacagctggg ctttgacggc aaatcgctga tcaacccgcg tcagattgat ctgctgcaca
     2941 acctctacgc accgacccag aaagaagtgg atcacgcccg ccgcgtcgta gaagccgctg
     3001 aagccgccgc tcgcgaaggc ctcggcgtgg tttccctgaa cggcaagatg gtggacggtc
     3061 cggttatcga tcgcgcccgt ctggtgctct cccgtgcaga actttccggc atccgcgaag
     3121 aataaggcaa tcaaaatgac gcagaaaatt gaacaatctc aacgacaaga acgggtagcg
     3181 gcctggaatc gtcgcgctga atgcgatctt gccgctttcc agaactcacc aaagcaaacc
     3241 taccaggctg aaaaagcgcg cgatcgcaaa ctgtgcgcca acctggaaga agcgattcat
     3301 cgctctggtt tacaggacgg catgacggtt tccttccatc acgctttccg tggcggtgac
     3361 ctgaccgtca atatggtgat ggacgtcatc gcgaagatgg gctttaaaaa cctgactctg
     3421 gcctccagct ccctgagtga ttgccatgcg ccgctggtag aacacattcg ccagggcgtg
     3481 gttacccgca tttatacctc tggcctgcgc ggtccactgg cggaagaaat ctcccgtggt
     3541 ctgctggcgg aaccggtgca aatccactct cacggcggac gtgtgcatct ggtacagagc
     3601 ggcgaactga atatcgacgt ggctttcctc ggcgtcccat cctgtgatga attcggtaat
     3661 gccaacggtt acaccggtaa agcctgctgt ggctccctcg gctatgcaat ggttgatgcc
     3721 gacaacgcaa aacaggtcgt gatgcttacc gaagaactgc tgccttatcc gcataatccg
     3781 gcaagcattg agcaagatca ggttgatttg atcgtcaaag ttgatcgcgt tggcgatgct
     3841 gcaaaaatcg gcgctggtgc gacccgtatg accactaacc cgcgcgaact gcttattgcc
     3901 cgtagcgctg cggatgtgat tgtcaactct ggctacttca aagaaggttt ctccatgcaa
     3961 accggcaccg gcggcgcttc gctggcggta acccgtttcc tggaagacaa aatgcgtagc
     4021 cgcgatattc gcgccgactt cgccctcggc ggtattactg caacgatggt tgatctgcac
     4081 gaaaaaggtc tgatccgcaa actgctggat gtgcagagct ttgacagcca tgctgcgcaa
     4141 tcgctggccc gtaaccccaa tcacatcgaa atcagcgcca accagtacgc taactggggt
     4201 tcgaaaggcg catcggttga tcgtctctac gtggtggtac tgagcgcgct ggaaattgac
     4261 acccagttca acgttaacgt gctgaccggc tctgacggcg tactgcgtgg tgcttccggt
     4321 ggtcactgcg ataccgcgat tgcctctgcg ctttccatca tcgtcgcgcc gctggtacgc
     4381 ggtcgtattc cgactctggt ggataacgtg ctgacctgca tcaccccggg ctccagtgtc
     4441 gatattctgg tcacagacca cggtatcgca gttaacccgg cacgtccgga gctggcagaa
     4501 cgtctgccgg aagcgggcat taaagtggtt tccattgagt ggctgcgtga acgtgcgcgt
     4561 ctgctgaccg gtgaaccaca gccgattgaa ttcaccgacc gagtcgttgc cgttgtgcgt
     4621 taccgcgatg gctcggtgat cgatgttgta catcaggtga aggaataagc catgcacctg
     4681 cttcctgaac tcgccagcca ccatgcggtg tcaattcccg agctgctcgt cagccgggat
     4741 gaaaggcaag cacggcaaca cgtctggctc aagcgccatc ctgttccact ggtctccttt
     4801 accgtggttg cgcctgggcc gattaaagac agtgaggtca cacgccgaat ttttaatcat
     4861 ggcgtgacag ccttgcgtgc cttagccgca aaacagggct ggcaaattca ggagcaggct
     4921 gcactggttt ccgccagcgg accggagggt atgttgagca ttgccgcccc ggctcgcgac
     4981 ctcaagctcg ccaccattga gcttgaacat agtcatcctc tcgggcggtt atgggatatc
     5041 gatgtcctga cgcccgaagg cgaaattctc tcccgccgcg actattcact gccgcctcgc
     5101 cgctgcctgt tgtgcgagca aagcgcagcc gtctgcgcgc gtggaaaaac ccatcaactg
     5161 accgatttac tcaaccgcat ggaggcactg ctgaacgatg tcgatgcctg caacgtcaac
     5221 taaaaccaca aagcttgcga cgtcattaat cgatgagtac gccctgctgg gctggcgcgc
     5281 catgctgact gaagtcaatc tgtcaccgaa accaggtctc gtggatcgca ttaactgcgg
     5341 tgcgcataaa gatatggcgc tggaagattt ccaccgcagc gcgctggcga ttcagggctg
     5401 gctaccccgt ttcattgaat ttggtgcctg tagtgcggaa atggcaccag aagcggtact
     5461 ccacggatta cgcccaattg gtatggcttg cgaaggtgat atgttccgcg ccaccgcggg
     5521 agtaaacacg cataagggca gcattttttc tttagggcta ctgtgtgcgg caattggccg
     5581 tttgcttcag ctcaaccagt cgctaacgcc aacaaccgtt tgttctacgg cggcaagttt
     5641 ctgccgtggc ctgaccgatc gcgaactgcg taccaataat tcacaactga cggcaggtca
     5701 acggttgtac cagcagcttg cccttaccgg cgcacgcggt gaagccgaag cgggttatcc
     5761 actggtgatc aaccacgcct tgccgcatta cctcactctg ctggatcagg ggttagatcc
     5821 tgaactggca ttgctcgata ccttgctcct actgatggcg atcaacggcg ataccaacgt
     5881 tgcttcgcgc ggtggcgagg ggggcctgcg ctggctacag cgcgaggcgc aaacattatt
     5941 gcaaaaaggg ggcattcgaa ccctcgccga tctcgattat ctccggcagt tcgacaggga
     6001 gtgtatcgaa cgaaatctca gtccaggcgg cagtgccgac ctgctgatcc ttacctggtt
     6061 tttagcacag atttaattat ttaagcactt gataaatttg gaaatattaa ttttcggaga
     6121 acccgtatgt ctttagcaaa agataatata tggaaactat tggccccact ggtggtgatg
     6181 ggtgtcatgt ttcttatccc tgtccccgac ggtatgccac cacaggcatg gcattacttc
     6241 gctgtgtttg tggcaatgat tgtcggcatg atcctcgagc caattccggc aacagcgatc
     6301 agttttattg cggttactat ttgcattatt ggcagtaatt acctgctctt tgatgccaaa
     6361 gaattagctg acccagcgtt taatgcgcaa aaacaggcgc tgaaatgggg tctggctggt
     6421 ttttccagca ccacggtatg gctggtattt ggcgcattta tttttgcatt agggtatgaa
     6481 gtttccgggt taggtcttcg cattgccctt ttcctggtga aattcatggg caaacgcacg
     6541 ctgacgttgg gttatgcgat tgtcattatc gacattctgc tggcgccgtt tacaccgtcc
     6601 aacaccgcgc gtaccggggg tacggttttt ccggtcatta aaaacctgcc gccgttgttt
     6661 aaatcattcc ccaacgatcc gtccgcgcgt catattggcg gctatttgat gtggatgatg
     6721 gtcattagta ccagtctgag ttcgtccatg tttgtcaccg gtgcggcacc aaacgtgctg
     6781 ggtctggagt tcgtcagcaa aattgccggt atccagatta gctggttgca gtggttcctc
     6841 tgcttcctgc cggttggggt tatcttgctt atcattgcgc cgtggctttc ctacgtgctg
     6901 tacaaaccgg aaatcacaca cagtgaagaa gtggcaacct aggcgggtga tgaactgaaa
     6961 accatgggtg cgctgacacg cagagagtgg acactgattg gccttgtatt gctcagctta
     7021 ggtttgtggg tttttggcag tgaagtcatt aatgctactg cagttggtct gctggcagtt
     7081 tcgctaatgc tggccctgca cgttgtgcct tggaaagata ttacccgcta taacagcgca
     7141 tggaacacgc tggtcaacct ggcaactctg gttgtgatgg ctaacggcct gactcgttct
     7201 ggctttattg actggttcgc cggtaccatg agtacgcacc tggaaggatt ctcaccaaac
     7261 gcaacggtga ttgtactggt tctggtgttc tactttgcac actacctgtt tgccagcctg
     7321 tctgcgcaca ccgcaaccat gctgccggtt attctggccg tcggtaaagg tattccgggc
     7381 gtaccaatgg aacaactgtg tatcctgctg gtgctgtcta tcggtatcat gggctgtctg
     7441 acgccctatg caaccggtcc tggggtgatt atttacggct gtggctatgt gaaatcaaaa
     7501 gattactggc gtcttggcgc aatcttcggg gtgatttaca tctctatgtt gctgttggtt
     7561 ggctggccga ttctcgccat gtggaactaa tacgttcgcc aaacgctgaa taaatcatca
     7621 cgcccgccag gtaagcccac ctggcgggcg tgatgattta atagatagta ttcagtgtat
     7681 gtatgagttc cacacccatt atgaaagcat tctggcgtaa cgccgcgttg ctcgcggttt
     7741 ctctgcttcc cttctcttct gccaacgccg tagcgttgca gacaaaacag tatggcgatt
     7801 ttgatcgcta tgtcctggcc ctctcctggc aaaccggatt ttgccagagt caacacgatc
     7861 gaaatcgtaa cgaacgagat gaatgtcgcc tgcaaaccga aacgaccaac aaagctgatt
     7921 ttctgaccgt acatggtctg tggccaggat tgcctaaatc ggttgctgcc cgtggtgttg
     7981 atgaacgccg ctggatgcgc ttcggttgcg ctactcgccc aatcccgaat ctaccagaag
     8041 cgcacgccag ccggatgtgt tcatcgccgg aaaccgggtt atcactggaa acggccgcta
     8101 aactaagtga agtcatgcca ggagctggcg gacgttcctg cctggaacgc tacgaatatg
     8161 ccaaacacgg tgcctgcttt ggttttgatc cggacgcata cttcggtacg atggtacgcc
     8221 tgaatcaaga aattaaagag agcgaagccg gaaaattcct tgcggataat tacggtaaaa
     8281 cagtgagccg ccgtgacttt gacgccgcct ttgccaaaag ctggggaaaa gagaacgtga
     8341 aagcagttaa gctaacgtgc cagggtaacc ctgcgtattt gactgaaatt cagatctcga
     8401 tcaaagctga cgccatcaac gctccgcttt ctgcaaactc attcttgcca caaccacacc
     8461 caggcaactg tggcaaaacc tttgtgattg ataaagtggg ttattaatca tctgatttac
     8521 aaaacacgct aattcgtctt ccataaaccg tgacgattaa gaattataca taatgcgctg
     8581 cattgaggaa ttccctgaat gtgacgcaaa tcacttcaaa gagtgagcaa cagtcagtat
     8641 catcatgtga gttaaaccct cgccgcctga cggtgagggt tttcttttgg gtatgtttat
     8701 ctgcgacact cgcagtaccg acgacatgga gtaaaaatgt ccagaccaac tatcatcatt
     8761 aacgacctgg atgccgaacg catcgatatt ctgctggagc aacccgccta tgctggtttg
     8821 ccaatcgccg acgcgttaaa cgcagagttg gatcgcgccc aaatgtgttc gccagaagag
     8881 atgccacacg acgtggtgac aatgaacagc cgggttaaat tccgcaatct tagcgatggc
     8941 gaagtgcgtg tgcgcacgct ggtgtatccg gcaaaaatga ccgatagcaa tactcagctt
     9001 tccgttatgg ctccggtagg tgccgcactg ctggggctgc gcgttggcga ttccattcac
     9061 tgggaacttc cgggcggcgt tgcaacccac cttgaagtgc tggaactcga ataccagcca
     9121 gaagctgctg gcgactacct gctttaatcc catctgcaca agcgataact cgctttgccc
     9181 agaggatgca ctcgcatcct ctttacgcaa aatcagcaat ttttcctggt tctcactgtt
     9241 cacttttgct gcaaaattat tccgtttcgt ttgtgggaat aaccatggca gaagcatttt
     9301 acatcctgat aggatttctg attatggcgg cgattatcgt catggctgtc ctttacctcg
     9361 aaaaccactc ctgacgatca tattgttccc cccggcatcg cattcaccag acctgaaact
     9421 gccttctgcg ccgcctctgc gctttgtgca ccgggtacca gaatcacctt acggcactcc
     9481 tcttcacgtt tttcgaaaat ctcatatccc cgggcggcct cttcaaacgg catatagtgg
     9541 gtaacaattt cttctggttt cagtaatcct ttctcaatta acggtaataa ttctcccagc
     9601 catgcgtgaa cgtgggtctg tcccatttta aacgtcaacc ctttatcaaa ggcgtcacca
     9661 aacaggaaac cgtgaataaa tccagcgtag acgcccggta cgctaacaat gccgccacgc
     9721 ctgaccgccg caatacactg gcgcaacgct ttaccgctgc tgccctccag tttcaggtta
     9781 gtcagcaccg tttccgtggt gctgcctttc gcttcaaaac cgacggcgtc tattactgca
     9841 tccacgcccc ggtgacctgc cgtttgttca ataattgact gtgccggatc gctatcttca
     9901 tcgaaattaa tcgggatcgc gccgtagcgg tcagcggcga aactcaagcg gtagggatga
     9961 tgatcaacaa caaaaatctg ttccgcaccg agcaaccgtg cacaggcgat tgtcaacaat
    10021 cccactggac cggcaccata gactgcaacg cttgaacctt gttggatctg cgcatttttt
    10081 gctgcctgcc atgccgttgg cagaatatca gaaaggaaaa gggctttatc atctgaaagc
    10141 aaaggcggta ctttaaacgg ccccacattc cctttaggga cgcggacata ttccgcctgt
    10201 ccaccaggaa cgccaccata caggtgacta taaccaaaca atgccgcggg agctggtatc
    10261 tgttttttat tgagcgcagc gcctttaccc gcattggtat tttcgcaggc ggcatattgc
    10321 tgcattcgac agaaaaaaca gtcgccacaa gcaatgacaa acggaattac cacccggtcg
    10381 cctttttgca aattttttac gtcctttccg gtttcaacga cttcccccat aaattcatga
    10441 ccaaaaatat cgccatgttt aacctggggt attttgcctc gataaagatg gagatcagag
    10501 ccacagatcg ccgttgccgt aatacgcaga ataatatcat ctgcctgttc aatgcccgga
    10561 tcgggaacat tttctacctg aacgtgatgt gggccgtgat aagtcaatgc tttcatgcaa
    10621 cctccagaga cagttcaaaa aagagtcagt ctttaagggt agctatcaca gcgggaaaac
    10681 gggcggtacc gcaggttttg ggagaattcc tagtgttcag tgagaatata ttaatcacag
    10741 aaaccgttcg taaggaaaaa gaaccagaca aatatcaggg ataaatatta taatcatggc
    10801 gaatgatttt ttcatgatta acagggagaa agggttatgt ataagacaat cattatgcca
    10861 gttgatgtat ttgaaatgga attgagcgac aaagctgttc gccacgctga attcctcacc
    10921 caggatgacg gagttattca tctacttcac gtactacccg ggtcagccag cctgagcctg
    10981 caccgttttg ccgctgatgt gcgtcgtttt gaagagcatc tgcaacatga agcagaagaa
    11041 cgtctgcaaa cgatggtcag ccacttcacc atcgatcctt cccgcattaa acaacatgtc
    11101 cgttttggta gcgtgcggga tgaagtcaat gagttggcag aagaactggg ggctgatgtt
    11161 gtagttatcg gttctcgcaa cccatcgatt tcgacccatc tgttaggttc taacgcctcg
    11221 agcgtgatcc gccacgccaa tctgcctgta ctggtcgttc gctaacagat aaaagtattt
    11281 atgccgccct gcctggaaca tcccggcagg gctttttaat gccataaaaa agccgctagg
    11341 tttgaccccg gcggctaagc aattgcaggt gaatcttact tcttcttatg cagttttggt
    11401 gcgaatcagg tagtcaaaag cactcagaga ggctttggca ccttcgccag tggcgatgat
    11461 gatctgcttg tacggaaccg tcgtacagtc acccgctgcg aatacgcctt tgacgttggt
    11521 ttcgcatttc gcatcaatga taatctcacc catgcggtta cgttcgactg cgccttcgag
    11581 ccagttggtg ttcggcagca gaccaatctg cacgaaaata ccggccagtt cgatgttgtg
    11641 aatatcgccg ctgacacgat ctcgatattc cagaccaacg actttgctgc cgtcgccttt
    11701 cacttccgtg gtttgcgcat tcagaataat gtcgacgttt ttcaggctgc gcagtttgtc
    11761 ctgcagaacc tggtcggctt tcatttctgg cgcaaattcc agcagcgtta cgtgctcaac
    11821 gatacccgcc aggtcaattg ccgcttccac gccggagtta ccgccgccga taaccgctac
    11881 gcgtttacct ttaaacagcg ggccgtcgca gtgcgggcag taggtcacgc ctttggtgcg
    11941 atactgatct tcgcccggaa cgttcatgtt gcgccatttt gcaccggtcg ccacgataat
    12001 gctgcgtgct ttcagtaccg cgccagaagc tgtttcaatc tgatgcagac caccttcaac
    12061 tgctgctggg atcagtttgc tggcgctctg gctgtcgatc acatcaacgt cgtattcatc
    12121 aacgtgaact ttcagtgcgc ctgccagctt ctgcccttca gtcttcggta cagaaatgta
    12181 gttttcgata tcaacggtat cgaggatctg accaccaaaa cgttcgccca tcagaccggt
    12241 acggatgcct ttacgtgcgg agtaaattgc tgccgctgca cccgccgggc cggaaccgac
    12301 gattaatacg tcataagcat cacgcttgtt cagctcttct gccgcacgtt tttccgcgcc
    12361 cgtatcaatt ttggcaacga tttcagtcaa cgtcatgcgg ccctgaccaa actctttccc
    12421 gtttacgaac actgccggaa cgcccatcac gttgcgatcg gtgatttcgt tctggaaggt
    12481 gccgccgtca attgcagtgt gcttgatgcg cgggttcagt acgctcatca ggttcagcgc
    12541 ctgcaccacg tccgggcagt tatggcaaga gagcgagtaa taggtttcga attcaaaatc
    12601 accgtcaata tggcgaatct gctccagcag agactgcgct tctttcgacg gatgaccacc
    12661 ggtccacagc aacgccagta ccagcgaggt gaactcgtgg cccagcgggg agcctgcaaa
    12721 acgtggcccc tggttggaac ctgggttggt gatcaggaaa gacggcttac gcaccggcaa
    12781 gctgttatct tctttaaagg tgactttgtc tgacagttct gcgatttcag ccaacagttc
    12841 cttgatttct gccgatttag cgctgtcatc cagcgtggca attaactcaa caggcttggt
    12901 caatttctca aggtaagcct tgagttgagt tttcatattt gtgtcgagca tgtttatctc
    12961 ctgggcttta aacatcatca tgcaagcggc ctctacggct acctggatgc agcttgcatc
    13021 atagtgcggg gaagaaaatc gggtgccgca gcacccgaag aattaggtga atttccgaag
    13081 tatttcgcgc cggagttggt agcgcgaaag acgaaggaaa tttagatttt accaaccagg
    13141 tccagagacg gagccagagt tgcttcacct tctttccatt tagccgggca aacttcacct
    13201 gggtgagaag ctacgtactg tgctgctttg attttacgca gcaggtcaga cgcgtcacgg
    13261 ccaatgcctt cagcggtaac ttcgattgcc tggatgatac cctgcgggtc aacaacgaag
    13321 gtcgcacggt cagccagacc ttcatcttca cgcatgttgt cgaagttacg ggtcagggcg
    13381 ccagtcgggt cgccgatcat cgcatatttg attttagcga tggtttcaga gctgctgtgc
    13441 catgctttgt gggtgaagtg agtatcggta gatactgcgt atacgtctac gcccagtttc
    13501 tgcagttctt cgtagtggtc agcaacgtca cccagttcgg tcgggcatac gaaagtaaag
    13561 tcagccgggt agaagaagaa gacgctccag cggccttcgg tatctttttc ggtgatttcg
    13621 atgaattcgc cgtttttgaa tgcctggttt ttaaaaggtt taattttggt gttaatcaag
    13681 gacatctata cttcctccgt gttttcgatg agatgtaagg taaccaattt ttgccgattc
    13741 ggctaatgcg tttccattat caaatcgata agttttacct tacaaccttc gtaagacaac
    13801 tttgtgaact ttgcaccgcc agcggcgata aaaagtaaaa tggccccctt tccaggtgac
    13861 cgtgtaatct gaactaccct ttggtatctt cagcgcctgc ctgcaggctg aggtgttgcc
    13921 cttacaaatg caacaacgac atggattaca acaccctcat aaacaaaggg caatcacctg
    13981 atctaagctc ttacctatga cagtgatagg ttatgccttt tactcgactt ttgcactgac
    14041 tgaaaaggac aaattaatgt taaaaaagat acttttactg gctctgcttc ctgcaatcgc
    14101 cttcgcagag gaacttcctg ctccagtaaa agcgattgaa aaacagggca ttacaatcat
    14161 caaaacgttc gatgcccccg gaggaatgaa aggttatctc ggaaagtatc aggatatggg
    14221 cgtcaccatc tacctgactc cagatggtaa gcacgctatc tctggttaca tgtacaacga
    14281 gaaaggtgaa aacctgagta acacacttat cgaaaaagaa atttacgcac cagccggacg
    14341 cgaaatgtgg caacggatgg aacaatccca ctggctcctc gacggtaaaa aagatgcgcc
    14401 ggtcattgtc tacgtcttcg ccgatccgtt ctgcccatat tgtaaacagt tct
//
LOCUS       DAJVUN010000102        14388 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.102, whole genome shotgun sequence.
ACCESSION   DAJVUN010000102 DAJVUN010000000
VERSION     DAJVUN010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14388
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.102"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            63..227
                     /locus_tag="OQQ76_002589"
                     /pseudo
     CDS             63..227
                     /locus_tag="OQQ76_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001244718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
     gene            complement(265..1326)
                     /locus_tag="OQQ76_002590"
     CDS             complement(265..1326)
                     /locus_tag="OQQ76_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HCS1969046.1"
                     /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV
                     AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD
                     MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL
                     TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL
                     EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGVFVVTIPVVGVALFQFGAGT
                     EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL
                     ATLIKAVIHAWPDGQIAQE"
     gene            1539..3002
                     /gene="bepA"
                     /locus_tag="OQQ76_002591"
     CDS             1539..3002
                     /gene="bepA"
                     /locus_tag="OQQ76_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-barrel assembly-enhancing protease"
                     /protein_id="HCS1969047.1"
                     /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADNADTLPDMGTSAGSTL
                     SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND
                     EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHLTQRHLARAMEDQQRSAPLT
                     WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD
                     PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL
                     AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP
                     LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP
                     QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL
                     SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM"
     gene            3023..3382
                     /gene="arsC"
                     /locus_tag="OQQ76_002592"
     CDS             3023..3382
                     /gene="arsC"
                     /locus_tag="OQQ76_002592"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311384.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HCS1969048.1"
                     /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT
                     LRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVAN
                     GKARIGRPPEQVLEIVG"
     gene            complement(3520..4266)
                     /gene="hda"
                     /locus_tag="OQQ76_002593"
     CDS             complement(3520..4266)
                     /gene="hda"
                     /locus_tag="OQQ76_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA inactivator Hda"
                     /protein_id="HCS1969049.1"
                     /translation="MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSS
                     LLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVP
                     EVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNL
                     GLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT
                     LFMTLDQLDRASITAQRKLTIPFVKEILKL"
     gene            complement(4316..5605)
                     /gene="uraA"
                     /locus_tag="OQQ76_002594"
     CDS             complement(4316..5605)
                     /gene="uraA"
                     /locus_tag="OQQ76_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HCS1969050.1"
                     /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA
                     TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC
                     LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII
                     ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL
                     YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI
                     SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM
                     GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM
                     ALATIVGIGLSLIFKLISVLRPEEVVLDAEEADITDK"
     gene            complement(5691..6317)
                     /gene="upp"
                     /locus_tag="OQQ76_002595"
     CDS             complement(5691..6317)
                     /gene="upp"
                     /locus_tag="OQQ76_002595"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HCS1969051.1"
                     /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT
                     ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY
                     RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV
                     AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK"
     gene            6641..7678
                     /gene="purM"
                     /locus_tag="OQQ76_002596"
     CDS             6641..7678
                     /gene="purM"
                     /locus_tag="OQQ76_002596"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HCS1969052.1"
                     /translation="MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGG
                     FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEP
                     LFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFC
                     VGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPL
                     ADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQW
                     PEVFNWLQTAGNVERHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIK
                     ASDSEQRVVIE"
     gene            7678..8316
                     /gene="purN"
                     /locus_tag="OQQ76_002597"
     CDS             7678..8316
                     /gene="purN"
                     /locus_tag="OQQ76_002597"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HCS1969053.1"
                     /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE
                     RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG
                     RLLNIHPSLLPKYPGLHPHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD
                     TEDDVTARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYAADE"
     gene            8488..10554
                     /gene="ppk1"
                     /locus_tag="OQQ76_002598"
     CDS             8488..10554
                     /gene="ppk1"
                     /locus_tag="OQQ76_002598"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HCS1969054.1"
                     /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN
                     NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM
                     ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE
                     IIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD
                     ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL
                     REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD
                     AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN
                     GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV
                     RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ
                     NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM
                     CSLIPNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV
                     ATPLLDPHLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK
                     SLEQPE"
     gene            10559..12100
                     /gene="ppx"
                     /locus_tag="OQQ76_002599"
     CDS             10559..12100
                     /gene="ppx"
                     /locus_tag="OQQ76_002599"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HCS1969055.1"
                     /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR
                     VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL
                     KRVEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI
                     LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG
                     TIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLA
                     ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR
                     RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS
                     DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ
                     ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST
                     PEIAA"
     gene            complement(12190..14378)
                     /gene="pdeF"
                     /locus_tag="OQQ76_002600"
                     /pseudo
     CDS             complement(12190..14378)
                     /gene="pdeF"
                     /locus_tag="OQQ76_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeF"
BASE COUNT         3789 a         3689 c         3594 g         3316 t
ORIGIN      
        1 cgacgggact ttttataccc cgcaggggtc ataacatgct tgacaactta ataggggcac
       61 cccccttctg gcaactggcg cacagtagcg cagacaattt tccggcactg acggtcagcc
      121 attttattac cgccaatctg ctcccggtga tgctgggtaa tattatcggc ggtgcagtgc
      181 tggtgagtat gtgttatcgg gctatttatt tacgtcagga atcctgaaaa atcagcccgg
      241 cgaaacagtt cgtcgggctg aagattattc ttgcgcgatt tgcccatcgg gccaggcgtg
      301 gatcacggct ttgatcagcg tcgccaatgg aatggcgaag aatacgcccc agaatcccca
      361 caaaccaccg aagatcacca ccgataaaat aatcaccagc ggatgcaggt taaccgcttc
      421 ggagaacaac accggtacta gcaggttgcc gtccagcgcc tgaataatca gatacaccgc
      481 gaagcagctc cagaattccg tgcctgcgcc aaactggaat agcgccacgc caaccaccgg
      541 aatggtcacc acaaatacgc caatgtacgg aataagaacc gagaagccga ccagcaccgc
      601 cagcagcagc gaatagttca gcccaaagag caagaacccc agccaggtgg cgatccccac
      661 cacgatcatc tccagcactt tgccgcggat atagttggtg atttgttgat tcatctcctt
      721 ccacacctgt cctgccagtc cacggttgcg cggcagcacc cgacgaacgg cgttcagcat
      781 ctgctctttg tctttcagca ggaagaagac catcaatggc accagcacca gatagacggc
      841 aatggtcagc aaaccgacca gcgaggcgag ggaaattttc accaccgaat cgcccatggt
      901 cagcatccga ctgcgcatat tttcggccat tgcatcaata atgcccgcgt ccattaacgc
      961 cggatagcgg cgcggcaacg tggcggcaaa gtcagaaagc ttattgagca tccccggcat
     1021 atcgcggatt aagtagatgc cctgttgcca ggcgataggc agtaccacga acgccatcag
     1081 tagcaatata ccgacaaaaa ccaccaatac aatcgacgtc gcccagcggc gggagcagcc
     1141 aatagattgc aggcgcacgg ttggccattc cagcaaatag gccagcacaa tagccaccag
     1201 caacggagca agcaggccac taaagaaaaa gataatgcca aatccggcaa ctaaaataac
     1261 cagcaaggca atcgcttccg ggtcgctaaa acggcggcga taccattgca tcaacatttc
     1321 gagcataaaa accttccctg aacctcaaga gcgggattgc gatccgcaat tgtatcgaaa
     1381 tgtcacaaaa aagacttcgc tttttatgac ggattcagga aactgaaaag tcatttgagt
     1441 gggctaatct tcgccgttac actcaaaggc ggcgcggtgg gaacgatatt tcacagtatc
     1501 ggtcaaatga ctatcttcag aaatacagga tagaggttat gttcaggcag ttgaaaaaaa
     1561 acctggttgc aaccctcatt gctgctatga ccattggtca ggtagccccg gcgtttgccg
     1621 acaacgcaga caccttgccg gatatgggaa cctccgcagg aagcacgctt tccattggtc
     1681 aggaaatgca gatgggcgac tattatgtcc gccagctacg cggcagcgcg ccgttaatta
     1741 atgacccgct gttaacgcaa tatattaatt cgctggggat gcgtctggtt tcgcatgcca
     1801 attcggttaa gacaccgttt catttttttc taatcaacaa cgacgaaatt aacgcctttg
     1861 ctttctttgg cggcaacgtg gtgctgcact ctgccctgtt ccgttattcc gataacgaaa
     1921 gtcaactggc ttcagttatg gcgcacgaaa tctcccacct cacccaacgt cacctggcgc
     1981 gagcgatgga agatcagcag cgcagcgcgc cgctgacctg ggtcggcgcg ttaggttcta
     2041 ttttactggc gatggccagt ccgcaggcgg ggatggcggc gctgaccggt acactggcgg
     2101 gaacgcgtca ggggatgatc agtttcaccc agcaaaatga acaggaagcg gaccgcattg
     2161 gtattcaggt gctgcaacgc tcgggattcg atccgcaggc gatgccaacc ttcctcgaaa
     2221 aattactcga tcaggcgcgt tactcctcgc gcccgccgga aattttattg actcacccgt
     2281 tgccggaaag tcgtctggca gatgctcgca accgtgctaa tcagatgcga ccgatggtgg
     2341 tgcagtcgtc ggaagatttc tatctggcga aagcgcgcac actggggatg tataattccg
     2401 gacgtaacca gctcaccagt gatttgctgg atgaatgggc gaaaggaaac gttcgtcagc
     2461 aacgagcggc gcaatatggt cgtgctttac aggcgatgga agccaataaa tacgacgagg
     2521 cgcgtaaaac gctgcaaccg ttactggcgg cagaacctgg caacgcatgg tatctcgatc
     2581 tggctaccga tatcgatctt gggcaaaaca aagccaatga ggcaatcaat cgcctgaaaa
     2641 atgcccgtga tttgcgcacc aatccggtgt tgcagctcaa cctggcaaac gcttatctgc
     2701 aaggcggtca accacaagaa gcggccaata ttctcaatcg ctacaccttt aataataaag
     2761 atgacagcaa cggctgggat ttactggcac aggcggaagc cgcgctaaat aaccgcgatc
     2821 aggagctggc tgcgcgagca gaaggttatg cgctcgccgg acgactcgat caggccattt
     2881 cgctgttgag tagcgccagt tcgcaggtga aattaggcag cctgcaacaa gcgcgttacg
     2941 atgcgcgcat cgaccagttg cgccagctgc aggaacgctt taagccttat accaagatgt
     3001 aattcgcatt aaaggaagaa caatgaccaa acaggtaaaa atctaccata acccacgctg
     3061 ttcaaagagc cgggaaacgc tgaacctgct gaaagaaaac ggcgtggagc cagaagtggt
     3121 actctacctt gagacacccg ccgatgcggc aacgctgcgc gatttgctga aaatgctggg
     3181 gatgaatagc gcccgtgaat tgatgcgcca gaaagaggat ctttataaag aactgaacct
     3241 ggctgacagt tcgcttagcg aagaggcgct gattcaggca atggtggata atccgaagct
     3301 gatggagcgc ccgattgtgg tcgcgaatgg caaagcgcgg attggtcgtc caccggagca
     3361 ggtactggaa atcgtgggtt aagatgtgct ccatcgctag ttgaagcaca ttgccggatg
     3421 cgacgcttgc catgtcttat ccggcctacg aatactatgg attaacttcg cgtagttcgg
     3481 ataaggcgtt cgcgccgcat ccgacaataa acaccttatc tacaacttca gaatttcttt
     3541 cacaaacgga atggtcagct tacgttgcgc ggtaatcgac gcacgatcca actgatccaa
     3601 cgtcataaat agcgtgcgca tttctctgtc gagccgcttc agcaagaaac gccccacatc
     3661 ttccggcagt tcaaaaccac gcaaacgcgc gcgtaactgt agcgcctgca acttatcttc
     3721 atcagaaagt ggctgcaatt tgtagatctg cccccagtcg agtcgcgacg cgagatccgg
     3781 taatcccaga ttcaactgcc gcggtggacg atcgccggtg atcaacaacc gtgttttgcc
     3841 cgattccaga attcgattgt agagatcgaa aatcgccatc tcccacaact catcgcctgc
     3901 aatacactca atgttgtcga tacaaaccag cgacaaatgc tccataccgt cgagcacttc
     3961 cggaacaaac caggtgcgtt tatccagcgg gacatagccc accgcatcgc cacgctgcga
     4021 caattccgcg caagccgcgt gcagcagatg gctgcgcccc gcgccttcgc gtgcccagag
     4081 atagatgtaa ccgctatgtt cctgacgcag cacgttttgc agcgcggcca gtaaagagga
     4141 gttatccccc ggccagaaac ttgcaaaggt ttcgtcgtca ggaagataaa gtggcaaaga
     4201 gagctgtgcc ggtgtgttca gagatacctc aaccaggatt tcacaaaatc gcgagaagtt
     4261 taccacagaa tcccatgatg tttgaaccgg gcagcaacac tgcccggtct gtacattatt
     4321 tgtctgttat atccgcctct tctgcgtcca gcaccacttc ttcagggcgc agcacactga
     4381 tcagtttgaa aatcaaactt aagccgatac cgacgatggt cgccagcgcc atacctttta
     4441 actccgccgc gccgatgttt accttcgcgc cactgacgcc gatgatcaaa atcacggaag
     4501 tcaggatcag gttctgtgct ttgttgtaat ccactttcga ttcgatcaaa acacgaatac
     4561 cggaagcacc gatgacacca taaagcagca gtgaaacgcc gcccatcacc ggcaatggga
     4621 tcatctggat agcggcagcc agtttaccga cgcaggaaag caggatagcg aaaatcgccg
     4681 ccccgccgat aacccaggta ctgtaaacac gggtgatcgc catcacgcca atgttttctc
     4741 cgtaagtggt atttggcgtg gagccaaaga agccggagat cacggtcgac aggccgttag
     4801 caaacatcga acggtgcaga cctggatcgc gcagcagatc ttttttgacg atattagccg
     4861 ttactaccag gtgccctacg tgttcggcaa taaccactaa cgccgctggc agaatagtca
     4921 gaatggcaaa ccactcgaag cgcggcgtat agagggttgg cagcgcaaac cagtgagcat
     4981 taataatcgg cgtggtatcg acaattccca ttgcgaaaga gagcgcgtag cccaccagca
     5041 cgccaattaa aatcgggata attgccagga aaccacgaaa cagcacagaa cctaaaaccg
     5101 tgaccgccag ggtggtaata gagatgatga tggttttgga gtctggcgtt tgcccttcag
     5161 ccgggagtaa acccgccata ccggcagcta cgcccgccag ctccagaccg atgacggcaa
     5221 cgattgcgcc cattgccgca ggtggaaaca gcacgtccag ccagccggtc cccgctttct
     5281 tcacgataaa agaaaccagg cagaacagca cgccgcacat aataaagccg cccagcgcga
     5341 cttcataccc taacggcaac agtaacaata ccggtgaaat aaaggcaaag ctggaaccaa
     5401 gataagccgg aattttccct ttacagatga agagatacag cagcgttcca ataccgttaa
     5461 ataacagtac agtcgccggg ttaatatgaa ataagacggg caccaggacg gttgcaccaa
     5521 acatggcgaa caaatgttgc aaactaagcg ggattgtctg taaaagtggc ggtctttcac
     5581 tcaccccgat agcacggcgc gtcatagtat tatcctctgt attatgtgtt ataggcgctt
     5641 tactcaaaaa aaagccgact cttaaagtcg gctttaatta tttttattct ttatttcgta
     5701 ccaaagattt tgtcaccggc atcgccgagg cccggaataa tgtatccgtg ctcgttcagt
     5761 ccctgatcaa tcgatgcggt atacagttcg acgtccgggt gcgctttttc cagcgcagcg
     5821 ataccttctg gcgcagcgac cagcaccaga actttgatgc tgctgcagcc cgcttttttc
     5881 agcaggtcga tggtcgcgat aacggaacca ccggttgcca gcattgggtc aacgatcagc
     5941 gccatacgct catcgatgtt agaaaccagt ttctggaagt acggtaccgg ctccagcgtt
     6001 tcttcattac ggtacatacc gacaacgctg atgcgcgcgc tcggaacatt ttccagcaca
     6061 ccgtccatca taccaagacc cgcacgcaga attggcacaa cggtaatttt cttacctttg
     6121 atctggtcga tttctaccgg gccgttccag ccttcgatag ttactttttc cgtttcgagg
     6181 tcggcggtcg cttcgtaagt cagcaggcta cccacttcgg aagcgagttc gcgaaagcgc
     6241 ttggtgctga tatcttgctc acgcatcagt cccagcttgt gtttgacgag tgggtgtttg
     6301 acttccacga tcttcatact ctttctcctt tgaggggcag ccacaaaaaa atcgacggat
     6361 tatacctcct ttcttcaagg cggcaatatt cttttcgttg actttagtca aaatgataac
     6421 gatttgagat aaagttattt tatattcaaa tggttatgaa agaagatcat tccatccgaa
     6481 aactaacctt tgccctggca caagtcttct ttcgccgcgc gtctggggaa aagacgtgca
     6541 aaaaggttgt gcaaagcagt ctcgcaaacg tttgctttcc ctgttagaat tgcgccgaat
     6601 tttatttttc taccgcaagt aacgcgtggg gacccaagca gtgaccgata aaacctctct
     6661 tagctacaaa gatgccggtg ttgatattga cgcgggtaat gctctggttg gaagaatcaa
     6721 aggcgtagtg aagaaaacgc gtcgtccgga agtgatgggc ggtctgggcg gcttcggtgc
     6781 gctgtgtgca ttgccgcaaa aatatcgtga acccgtgctg gtttccggca ctgacggcgt
     6841 aggtaccaag ctgcgtctgg caatggactt aaaacgtcac gacaccattg gtattgatct
     6901 ggtcgccatg tgcgttaatg acctggtggt gcaaggtgca gaaccgctgt ttttcctcga
     6961 ctattacgca accggaaaac tggatgttga taccgcttca gcggtgatca gcggcatcgc
     7021 ggaaggttgt ctgcaatcgg gctgttcact ggtgggtggc gaaacggcag aaatgccggg
     7081 gatgtatcac ggtgaagatt acgatgtcgc gggtttctgc gtgggcgtgg tagaaaaatc
     7141 agaaatcatc gacggctcta aagtcagcga cggcgatgtt ctgattgcac tcggttccag
     7201 cggtccgcac tcgaacggct attcgctggt gcgcaaaatt cttgaagtca gcggttgtga
     7261 tccgcaaacc accgaacttg atggtaagcc attagccgat catctgctgg caccgacccg
     7321 catttacgtg aagtcagtgc tggagttgat tgaaaaggtc gatgtgcatg ccattgcgca
     7381 cctgaccggc ggcggcttct gggaaaacat tccacgcgta ttgccagata atactcaggc
     7441 agtgattgat gaatcttcct ggcagtggcc ggaagtgttc aactggctgc aaacggcagg
     7501 taacgttgag cgccatgaaa tgtatcgcac cttcaactgc ggcgtcggga tgattattgc
     7561 cctacctgct ccggaagtgg acaaagccct cgccctgctc aatgccaacg gtgaaaacgc
     7621 gtggaaaatc ggtatcatca aagcctctga ttccgaacaa cgcgtggtta tcgaataatg
     7681 aatattgtgg tgcttatttc cggtaacgga agtaatttac aggcaattat tgacgcctgt
     7741 aaaaccaaca aaattaaagg caccgtacgg gcagttttca gcaataaggc cgacgcgttc
     7801 ggccttgaac gcgcccgcca ggcgggtatt gcaacgcata cgctcatcgc cagcgcgttt
     7861 gacagtcgtg aagcctatga ccgggagttg attcatgaaa tcgacatgta cgcacccgat
     7921 gtggtcgtgc tggctggttt tatgcgcatt ctcagcccgg cgtttgtctc ccactatgcc
     7981 gggcgtttgc tgaacattca cccttctctg ctgccgaaat atcccggatt acacccccat
     8041 cgtcaggcgc tggaaaatgg cgatgaagag cacggtacat cggtgcattt cgtcaccgat
     8101 gaactggacg gtggcccggt tattttacag gcgaaagtcc cggtatttgc tggtgatacg
     8161 gaagatgacg tcaccgcccg cgtgcaaacc caggaacacg ctatttatcc actggtgatt
     8221 agctggtttg ccgatggtcg tctgaaaatg cacgaaaacg ccgcgtggct ggatggtcaa
     8281 cgtctgccgc cgcagggcta cgctgccgac gagtaatgcc cccgtagtta aagcgccagc
     8341 tctgccgctg gcgtttttca attcacctgt aaatcgcaag ctccagcagt ttttttcccc
     8401 cttttctggc atagttggac atctgccaat attgctcgcc ataatatcca ggcagtgtcc
     8461 cgtgaataaa acggagtaaa agtggtaatg ggtcaggaaa agctatacat cgaaaaagag
     8521 ctcagttggt tatcgttcaa tgaacgcgtg cttcaggaag cggcggacaa atctaacccg
     8581 ctgattgaaa ggatgcgttt cctggggatc tattccaata accttgatga gttctataaa
     8641 gtccgcttcg ctgaactgaa gcgacgcatc attattagcg aagaacaagg ctccaactct
     8701 cattcccgcc atttactggg caaaattcag tcccgggtgc tgaaagccga tcaggaattc
     8761 gacggcctct acaacgagct attgctggag atggcgcgca accagatctt cctgattaat
     8821 gaacgccagc tctccgtcaa tcaacaaaac tggcttcgtc attattttaa gcagtatctg
     8881 cgtcagcaca ttacgccgat tttaatcaat cctgacactg acttagtgca gttcctgaag
     8941 gatgattaca cctatctggc ggtggaaatt atccgtggag acaccatccg ttacgcgctg
     9001 ctggagatcc catcagataa agtgccgcgc tttgtgaatt taccgccaga agcgccgcgt
     9061 cgacgcaagc cgatgattct tctggataac attctgcgtt actgccttga tgatattttc
     9121 aaaggcttct ttgattatga cgcgctgaat gcctattcaa tgaagatgac ccgcgatgcc
     9181 gaatacgatt tagtgcatga gatggaagcc agcctgatgg agttgatgtc ttccagtctc
     9241 aagcagcgtt taactgctga gccggtgcgt tttgtttatc agcgcgatat gcccaatgcg
     9301 ctggttgaag tgttacgcga aaaactgact atttcccgct acgactccat cgtccccggc
     9361 ggtcgttatc ataattttaa agactttatt aatttcccca atgtcggcaa agccaatctg
     9421 gtgaacaaac cactgccgcg tttacgccac atttggtttg ataaagccca gttccgcaat
     9481 ggttttgatg ccattcgcga acgcgatgtg ttgctctatt atccttatca cacctttgag
     9541 catgtgctgg aactgctgcg tcaggcttcg ttcgacccga gcgtactggc gattaaaatt
     9601 aacatttacc gcgtggcgaa agattcacgc atcatcgact cgatgatcca cgccgcacat
     9661 aacggtaaga aagtcactgt ggtggttgag ttacaggcgc gtttcgacga agaagccaac
     9721 attcactggg cgaagcgcct gaccgaagca ggcgtgcacg ttatcttctc tgcgccgggg
     9781 ctgaaaattc acgccaaact gttcctgatt tcacgtaaag aaaacggtga agtggtccgt
     9841 tacgcacaca tcgggaccgg gaactttaac gaaaaaaccg cgcgtcttta tactgactat
     9901 tcgttgctga ccgcagatgc gcgtatcacc aacgaagtac ggcgggtatt taactttatt
     9961 gaaaacccat accgcccagt gacatttgat tatttaatgg tgtcaccgca aaactctcgc
    10021 cgtctgttat atgaaatggt agaccgcgaa atcgccaacg cgcagcaagg gctgcccagt
    10081 ggtatcaccc tgaagctaaa taaccttgtc gataaaggcc tggttgatcg tctgtatgcg
    10141 gcctccagct ccggcgtacc ggttaatctg ctggttcgcg gaatgtgttc gctgatcccc
    10201 aatctggaag gcattagcga caacattcgt gccatcagta ttgttgaccg ttaccttgaa
    10261 catgaccggg tttatatttt tgaaaatggc ggcgataaaa aggtctacct ttcttccgcc
    10321 gactggatga cgcgcaatat tgattatcgt attgaagtgg cgacaccgct gctcgatccg
    10381 cacctgaagc agcgggtgct ggacatcatc gacatattgt tcagcgatac ggtcaaagca
    10441 cgttatatcg ataaagaact cagtaatcgc tacgttcccc gcggcaatcg ccgcaaagta
    10501 cgggcgcagt tggcgattta cgactacatc aaatcactcg aacaacctga ataaccctat
    10561 gccaatacac gataaatccc ctcgtccgca ggagtttgct gcggtcgatc ttggttcaaa
    10621 cagttttcac atggtcatag cccgtgtggt agatggtgcc atgcagatta ttggccgcct
    10681 gaaacagcga gtgcatctgg cggacggcct ggggccagat aatatgttga gtgaagaggc
    10741 aatgacgcgc ggtttgaact gtctgtcgct gtttgccgaa cggctacaag ggttttctcc
    10801 tgccagcgtc tgtatagtcg gcacccatac gctgcgtcag gcgctgaacg ccactgactt
    10861 tctgaaacgc gtggaaaagg tcattcccta cccgattgaa attatttccg gtaatgaaga
    10921 agcccgtctg atttttatgg gcgtggaaca tacccaaccg gagaaaggtc gcaaactggt
    10981 tattgatatt ggcggcggat ctacggaact ggtgattggt gaaaatttcg aaccgattct
    11041 cgttgaaagc cgccggatgg gttgtgtcag ctttgcccag ctttacttcc ctggcggggt
    11101 catcaataaa gagaattttc agcgcgctcg tatggcggca gcacaaaaac tggaaacttt
    11161 aacctggcaa ttccgtattc agggctggaa cgtggcaatg ggcgcttccg gtaccataaa
    11221 agccgcccat gaagtgttaa tggaaatggg cgagaaagac gggataatta ccccggaacg
    11281 tctggaaaaa ctggtaaaag aagttttacg tcaccgtaat ttcgcatcgc tgagtttacc
    11341 gggtctttcc gaagagcgga aaacagtctt cgttcctgga ctggcgattt tatgcggtgt
    11401 gtttgatgct ttagccatcc gtgaactgcg cctttctgac ggggcgttac gcgaaggcgt
    11461 actgtacgaa atggaaggac gtttccgtca tcaggatgtg cgtagtcgca ccgccagcag
    11521 cctcgccaac cagtatcaca tcgacagcga acaggcccga cgggtgctgg ataccactat
    11581 gcaaatgtac gaacagtggc gggaacagca accgaagctg gcgcatccgc aactggaggc
    11641 gctactgcga tgggccgcca tgctgcatga ggtcgggttg aatatcaacc acagcggttt
    11701 gcatcgccac tccgcttata ttctgcaaaa cagtgacttg ccgggtttta atcaggaaca
    11761 gcagctgatg atggcgacac tggtgcgcta tcaccgcaaa gcgattaaac tcgacgatct
    11821 gccgcgcttt accttgttta agaagaaaca gttcctgcca ctgattcagc tattgcgcct
    11881 tggcgtatta ctcaacaatc aacgtcaggc aaccaccaca ccgccaacat tgacactgat
    11941 tactgatgac agtcactgga cactgcgttt cccgcatgac tggtttagtc agaatgcgtt
    12001 ggtactgctt gatctggaaa aggagcaaga atactgggaa ggcgtggctg gctggcggtt
    12061 gaaaattgaa gaagaaagta cacctgaaat cgccgcttaa tgctttgcgg gccgacgaga
    12121 aatggcggcc cgcattattc aggcactttc gcgaatgggt tcgatttcat tcaacgtatc
    12181 aattaacggc tacggcttac caataagata accctgcata taatcgatcc ccaaagagag
    12241 caccgcctcg cggatctctt cgttttcaac gtactctgcc actacccgca ttttcttcat
    12301 tcgcgccagg tggcaaatcg atgccactat ctgataatcc agactatttg acacaatatt
    12361 gcggataaaa ctgccgtcaa ttttaagcag atcggcattc acatttttaa gccgtgcata
    12421 gctggcgtag ccggtgccga aatcatcaat cgcaatctgg cagcctaatt cctgaagatg
    12481 ctgcaaggtg atttgcgcct gcttaacatt ggtcagagca ttactttcgg tgacttcaaa
    12541 aataagttgc cacgcttcaa tctgatattt agccagcaac tgacttcaaa aggaaaacga
    12601 gcctgacata ccgaggttgg agacagatta atagcaaaac ggtgagcggg catcttcgct
    12661 ctgttttcag ccataaattg cagcgtatgc tcaatgaccc acatgtcgat actcgacgat
    12721 aaaccaaatt cgtgcgcgac cggcaagaag ctatcggggc tgatcagttc atcattctca
    12781 cctttcatgc gcagaagaat ttcatggtaa acatcaccac gcataccggt aatcggctgg
    12841 gccatcagga aaaaatggtt gtgttccagc gcctgctgta gtcgattcat catcgcgact
    12901 ttatctttca attcgcgttg caaatacatt gccccgcgac gctgcatatt ttccggggcg
    12961 ttggtcacga tggaaagttc ggcgaccgta tttagctctc ccagcagcag gtagatatga
    13021 ttcactggcg agcgcacata gcagtaactg acgccaatct gcggttgcat cggcatgcca
    13081 tcccaaaaga aacgaaattg cttgagatgg ctatccagtg cggtaatgcg ctcctggtgc
    13141 gattctgtat tcagtcgcag cgcgagatcg ttacccgaaa gctgataaac atcttcaccc
    13201 ggttccagca agggtgacag ccagtgagaa agtttttgct tgtattgaat ccgcagcatg
    13261 atgccatagt tcttaaccag catttccatg ccagggatgc gtaaataaca aagcgcagac
    13321 cagggggcat cacgcaacgc gcaattcagg gcgcgaacat ttggcagatg aaccaccggg
    13381 tccacatacg caagccgctg aatgcgtctg actaccgctc tctgacgggt tgccagtaca
    13441 gccatataat tgacaataaa agagaatacc agataactgg aggaggttat ggtcagctgc
    13501 gtggtatagc taggataaat gggaatgtaa ttttgatagc tgtggatgct gatcatcaac
    13561 acgaccgccc agagcagaga aatcagctta taaccatagc gcatcgctcc ccacatcatc
    13621 aggggcagca ataatgataa ggtataattg gtgctaaaaa ttgtgctttt ttcatttaac
    13681 ggcatgcata acagcaacaa taaagcacct aatgccagta gccagagcgc gaactctttt
    13741 ttggtgactt tggcatcaac ctgctgtttt aattgcgaat aatagctacg taaataaaat
    13801 ggatttcgca ctacccgaat gatgaagtag cacagcggga caccgatcag attacccacc
    13861 agtaaggcct gataattgat taaagtcccg aggttaaaag gcatgacacc gaccagattt
    13921 tctctgctcg ccagtaatcc tacaaatgca gcaaactgga aaagtatcag aaacagcgtt
    13981 gcaggaaaca caatctgcca gaatatacgc tgggaaatta aacgggtatc accatgtgaa
    14041 acgttgttac gccggggagt aaagaccctg taaccgcccc aacagagaat gataatgata
    14101 ataaaattag ccgttaatga tagcgtttcg taaaaaccca gctctgcata tttgcggaca
    14161 aaaatcccta aggcgatccc tggcaatgcc gcccagctga aaaacatcat catgctgatc
    14221 atcagtgcca gaggcagata aaagagaaaa acctcaccgg aagaaatatg cgcgaaagta
    14281 ttaatgtggg cgaaaatggg caagattaaa aaaggcagga atagcggaag cccccaccat
    14341 ttatcacgta tttttatata agttgcattc agtttcatag atgctcag
//
LOCUS       DAJVUN010000103        14232 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.103, whole genome shotgun sequence.
ACCESSION   DAJVUN010000103 DAJVUN010000000
VERSION     DAJVUN010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14232
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.103"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..2096
                     /gene="ldcC"
                     /locus_tag="OQQ76_002601"
     CDS             <1..2096
                     /gene="ldcC"
                     /locus_tag="OQQ76_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lysine decarboxylase LdcC"
                     /protein_id="HCS1969056.1"
                     /translation="EPIKELESALVAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD
                     EYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGQAEDIAIRMR
                     QYTNEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTL
                     KADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPS
                     GSTLLIDRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIPHREFTRDSIEEKVAAT
                     TQAQWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMS
                     GERVAGKVIFETQSTHKMLAALSQASLIHIKGEYDEEAFNEAFMMHTTTSPSYPIVAS
                     VETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWP
                     VAPGEQWHGFNDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIV
                     VEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRSYDLNLRIKNMLPDLYAEDPDFYR
                     NMRIQDLAQGIHKLIRKHDLPGLMLWAFDTLPEMIMTPHQAWQRQIKGEVETIALEQL
                     VGRVSANMILPYPPGVPLLMPGEMLTKESRTVLDFLLMLCSVGQHYPGFETDIHGAKQ
                     DEDGVYRVRVLKMAG"
     gene            2153..2542
                     /locus_tag="OQQ76_002602"
     CDS             2153..2542
                     /locus_tag="OQQ76_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1969057.1"
                     /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSW
                     KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA
                     IRVDPYTQKRFTFFNDPDGLPLELYEQ"
     gene            2607..3905
                     /gene="tilS"
                     /locus_tag="OQQ76_002603"
     CDS             2607..3905
                     /gene="tilS"
                     /locus_tag="OQQ76_002603"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HCS1969058.1"
                     /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVTL
                     RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA
                     RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR
                     GELAQWALAHGLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE
                     QESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALV
                     RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSETIVPWQTWLQPLELPA
                     GLGSVQLTAGGDIRPPRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRD
                     TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS"
     gene            complement(3954..4214)
                     /gene="rof"
                     /locus_tag="OQQ76_002604"
     CDS             complement(3954..4214)
                     /gene="rof"
                     /locus_tag="OQQ76_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HCS1969059.1"
                     /translation="MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD
                     LVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES"
     gene            complement(4201..4401)
                     /locus_tag="OQQ76_002605"
     CDS             complement(4201..4401)
                     /locus_tag="OQQ76_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeP family protein"
                     /protein_id="HCS1969060.1"
                     /translation="MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALS
                     EAVREKAAYAAANLLVSDYVNE"
     gene            4567..5112
                     /locus_tag="OQQ76_002606"
     CDS             4567..5112
                     /locus_tag="OQQ76_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HCS1969061.1"
                     /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL
                     LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEV
                     ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV
                     IWLSDDKNNLEVNLTAWQQPS"
     gene            5109..5531
                     /gene="arfB"
                     /locus_tag="OQQ76_002607"
     CDS             5109..5531
                     /gene="arfB"
                     /locus_tag="OQQ76_002607"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCS1969062.1"
                     /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR
                     ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQ
                     KARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE"
     gene            5545..6255
                     /gene="nlpE"
                     /locus_tag="OQQ76_002608"
                     /gene_synonym="cutF"
     CDS             5545..6255
                     /gene="nlpE"
                     /locus_tag="OQQ76_002608"
                     /gene_synonym="cutF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308221.1"
                     /note="NlpE, an outer membrane lipoprotein, interacts
                     directly with CpxA, the sensor histidine kinase of the Cpx
                     system for response to envelope stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response activation lipoprotein
                     NlpE"
                     /protein_id="HCS1969063.1"
                     /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS
                     WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTD
                     SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAA
                     TFTDCATGKRFMVANNAELERGYLAARGHSEKPVLLSVEGHFTLEANPDTGAPTKVLA
                     PDTAGKFYPNKDCSSLGQ"
     gene            complement(6455..7279)
                     /locus_tag="OQQ76_002609"
     CDS             complement(6455..7279)
                     /locus_tag="OQQ76_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeF family permuted papain-like enzyme"
                     /protein_id="HCS1969064.1"
                     /translation="MDKPKAYCRLLLPSFLLLSACTVDISQPDPSATAVDAEAKTWAV
                     KFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNN
                     VAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIV
                     EFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKA
                     GHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR"
     gene            complement(7332..9050)
                     /gene="proS"
                     /locus_tag="OQQ76_002610"
     CDS             complement(7332..9050)
                     /gene="proS"
                     /locus_tag="OQQ76_002610"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HCS1969065.1"
                     /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
                     TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
                     PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA
                     YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE
                     DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
                     TVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG
                     PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA
                     GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
                     VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
                     LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL
                     VKQIKG"
     gene            complement(9161..9868)
                     /gene="tsaA"
                     /locus_tag="OQQ76_002611"
     CDS             complement(9161..9868)
                     /gene="tsaA"
                     /locus_tag="OQQ76_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HCS1969066.1"
                     /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQ
                     ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
                     SLVELKEVVCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE
                     MAVSFTAEVENQLLTLEKRYPQLTLFIREVLAQDPRPAYHKGEETGKTYAVWLHDFNV
                     RWRVTDAGFEVFALEPR"
     gene            complement(9865..10269)
                     /gene="rcsF"
                     /locus_tag="OQQ76_002612"
     CDS             complement(9865..10269)
                     /gene="rcsF"
                     /locus_tag="OQQ76_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rcs stress response system protein RcsF"
                     /protein_id="HCS1969067.1"
                     /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP
                     RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN
                     AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK"
     gene            complement(10387..11202)
                     /gene="metQ"
                     /locus_tag="OQQ76_002613"
     CDS             complement(10387..11202)
                     /gene="metQ"
                     /locus_tag="OQQ76_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HCS1969068.1"
                     /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ
                     VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK
                     LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
                     VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
                     FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
     gene            complement(11242..11895)
                     /gene="metI"
                     /locus_tag="OQQ76_002614"
     CDS             complement(11242..11895)
                     /gene="metI"
                     /locus_tag="OQQ76_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease MetI"
                     /protein_id="HCS1969069.1"
                     /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
                     QIIANAKLYRTVSAIVNIFRSIPFIILLVWTIPFTRVIVGTSIGLQAAIVPLTVGAAP
                     FIARMVENALLEIPTGLIEASRAMGATAMQIVRKVLLPEALPGLVNAATITLITLVGY
                     SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK"
     gene            complement(11888..12919)
                     /gene="metN"
                     /locus_tag="OQQ76_002615"
     CDS             complement(11888..12919)
                     /gene="metN"
                     /locus_tag="OQQ76_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HCS1969070.1"
                     /translation="MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK
                     STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN
                     VALPLELDNTPKDEIKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK
                     VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
                     LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ
                     SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH
                     VKVEVLGYV"
     gene            13107..13679
                     /gene="gmhB"
                     /locus_tag="OQQ76_002616"
     CDS             13107..13679
                     /gene="gmhB"
                     /locus_tag="OQQ76_002616"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HCS1969071.1"
                     /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK
                     MGFVLVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE
                     FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
                     ITSEAENAADWVLNSLADLPQAIKKQQKPA"
     gene            14043..>14232
                     /locus_tag="OQQ76_002617"
     rRNA            14043..>14232
                     /locus_tag="OQQ76_002617"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         3484 a         3598 c         3767 g         3383 t
ORIGIN      
        1 atgagcccat caaagaactg gagtcggcgc tggtggcgca aggctttcag attatctggc
       61 cacaaaacag cgttgatttg ctgaaattta tcgaacataa ccctcgaatt tgcggcgtga
      121 tttttgactg ggatgagtac agtctcgatt tatgcagcga tatcaatcaa cttaatgaat
      181 atctcccgct ttatgccttc atcaacaccc actcgacgat ggatgtcagc gtgcaggata
      241 tgcggatggc gctctggttt tttgaatatg cgctggggca ggcggaagat atcgccattc
      301 gtatgcgtca gtacaccaac gaatatcttg ataacattac gccgccgttc acgaaagcct
      361 tgtttaccta cgttaaagag cggaagtaca ccttttgtac gccggggcat atgggcggca
      421 ccgcatatca aaaaagcccg gttggctgcc tgttttatga ttttttcggc gggaataccc
      481 tcaaggctga tgtctctatt tcggtcaccg agcttggttc gttgctcgac cacaccgggc
      541 cacacctgga agcggaagag tacatcgcgc ggacttttgg cgcggaacag agttatatcg
      601 ttaccaacgg aacatcgacg tcgaacaaaa ttgtgggtat gtacgccgcg ccatccggca
      661 gtacgctgtt gatcgaccgc aattgtcata aatcgctggc gcatctgttg atgatgaacg
      721 atgtagtgcc agtctggctg aaaccgacgc gtaatgcgtt ggggattctt ggtgggatcc
      781 cgcaccgtga atttactcgc gacagcatcg aagagaaagt cgctgccacc acgcaggcac
      841 aatggccggt tcatgcggtg attaccaact ccacctatga tggcttgctc tacaacaccg
      901 actggatcaa acagacgctg gatgtcccgt cgatccactt cgattccgcc tgggtgccgt
      961 acacccattt tcatccgatc taccagggga aaagtggtat gagcggcgag cgtgttgcgg
     1021 gaaaagtgat cttcgaaacg caatcgaccc acaaaatgct ggcggcgtta tcgcaggctt
     1081 cgctgatcca cattaaaggc gagtatgacg aagaggcgtt taacgaagcc tttatgatgc
     1141 ataccaccac ctcgcccagt tatcccattg ttgcttcggt tgagacggcg gcggcgatgc
     1201 tgcgtggtaa tccgggcaaa cggctgatta accgttcggt ggagcgggcg ctgcattttc
     1261 gcaaagaggt ccagcggttg cgggaagagt ctgacggttg gtttttcgat atctggcaac
     1321 cgccgcaggt ggatgaagcc gaatgctggc ccgttgcgcc aggcgaacag tggcacggct
     1381 ttaacgatgc ggatgccgat catatgtttc tcgatcccgt taaagtcact attttgacac
     1441 cggggatgga cgaacagggc aatatgagcg aggaggggat cccggcggcg ctggtggcaa
     1501 aattcctcga cgaacgtggg atcgtagtag agaaaaccgg cccttataac ctgctgtttc
     1561 tctttagtat tggtatcgat aaaaccaaag caatgggatt attgcgtggg ttgacggaat
     1621 ttaaacgctc ttacgatctc aacctgcgga tcaaaaatat gctacccgat ctctatgctg
     1681 aagatcccga tttctaccgc aatatgcgta ttcaggatct ggcgcaaggg atccataagc
     1741 tgattcgtaa acacgatctt cccggtttga tgttgtgggc attcgatact ttgccggaaa
     1801 tgatcatgac gccacatcag gcatggcaga gacagattaa aggtgaagta gaaaccattg
     1861 cgctggaaca actggtcggt agagtatcgg caaatatgat cctgccttat ccaccgggcg
     1921 taccgctgtt gatgccagga gaaatgctga ccaaagagag ccgcacggta ctcgattttc
     1981 tactgatgct ttgttccgta gggcaacatt accccggttt tgaaacggat attcacggcg
     2041 cgaaacagga cgaagacggc gtttaccgcg tacgagtcct aaaaatggcg ggataacttg
     2101 ccagagcggc ttacgggcga gtaacgtgct gttaacaaat aaaggagacg ttatgctggg
     2161 tttaaaacag gttcaccata ttgcgattat tgcgacggat tatgcggtga gcaaagcttt
     2221 ctactgcgat attcttggtt tcacgctgca aagcgaagtc tatcgcgaag cgcgcgactc
     2281 gtggaaaggg gatttggcgc ttaatgggca atatgtgatt gagcttttct cttttccgtt
     2341 cccgccggag cgccccagcc gaccggaagc ttgcggcctg cgtcatctgg cttttagcgt
     2401 tgatgacatc gatgcggcag tggcgcacct tgaaagccat aacgtgaagt gtgaagccat
     2461 ccgtgtcgat ccatacacgc aaaaacgctt caccttcttt aacgatccgg acgggctgcc
     2521 gttggaactg tatgagcagt aaggcttgtc atcgccgcat ttgcccggta acgtgccggg
     2581 cattgctact gtaaaatcgc accatcatga cactcacgct caatagacaa cttctcacct
     2641 cacgccagat tttggtcgcc tttagcggcg ggcttgactc caccgttctg ctgcatcagt
     2701 tggtgcagtg gcggacggaa aatccgggcg tcactctgcg cgctattcat gtgcatcacg
     2761 gtttaagtgc caatgccgat gcctgggtta cgcattgcga aaacgtctgc caacagtggc
     2821 aggtgccgct ggtggtcgaa cgcgtacaac ttgcgcaaga ggggctgggg attgaggccc
     2881 aggcgcggca ggcgcgttat caggcatttg cccgtaccct attgcccggc gaagtgctgg
     2941 tcaccgcgca acatctcgac gatcaatgtg aaacctttct gctggcgcta aaacgcggta
     3001 gcggccctgc cgggctttcg gctatggcgg aagtttcgga gtttgccgga acacggctta
     3061 tccgcccgtt gcttgcccgc acgcgggggg aactggcgca gtgggcattg gcgcatggtt
     3121 tacgctggat tgaagacgaa agtaatcagg acgactcata cgatcgtaac tttctgcgcc
     3181 tgcgcgtagt gccgttattg cagcagcgtt ggccgcattt tgcggaagca acggcccgca
     3241 gcgccgcact ttgtgctgaa caagagagtc tgttggatga actgctggcg gatgatttag
     3301 cacactgcca aacgtcgcag gggacgctgc agattgcgcc aatgctggcg atgagtgatg
     3361 cccgccgcgc ggcgattatc cgtcgctggc tggcagggca gaatgcacca atgccttccc
     3421 gcgacgcgct ggtgcggatc tggcaggaag tggcgctggc gcgggaagat gcctccccct
     3481 gtttacgctt gggcgcgttt gaaatccgcc gctatcagtc gcaactgtgg tggattaaat
     3541 ccgtcaccgg gcaaagtgaa accattgtgc cgtggcagac gtggctacaa ccgctggaat
     3601 taccggcggg gctgggaagc gtacagctta ctgcgggagg cgatattcgc cctccgcgtg
     3661 cagacgaagc ggtcagcgtg cgtttcaaat cggcaggatt gctgcatatt gtcgggcgca
     3721 acggcggacg taagctgaag aaaatctggc aagagttagg cgtgccgccg tggctacgtg
     3781 acaccacgcc actgctgttt tatggcgaaa cgctgattgc ggcggcaggg gtatttgtga
     3841 cgcaagaagg tgtggctgaa ggtgagaatg gcgtaagttt tgtctggcag aaaacgctta
     3901 gttaagtgaa agccggataa gacgcatcaa acgtcgcatc cggcgaaagt caatcaggac
     3961 tcgctcacca ccaccgtacc gatttccggg tggctaaagc tggtaatttt atccagacgt
     4021 agctcacggg tttcgccagc ggcctcgacg accagatact ccacattttt gcgggagact
     4081 aaatcgctgg cttttgcctg caatttttcg ccatctttca gctcaagtgt cagcattaaa
     4141 tgatgctggc aggcgagctc aagattatcg taatcatcac aattgattgg ttgatacgta
     4201 tcattcattg acataatcgc tcaccagtaa gtttgccgca gcgtatgctg ctttttccct
     4261 gacagcctca gaaagggcgt cgtcggcagc catttcattc agcactttca aaacgcagcc
     4321 cagcgcgtcc ggaacgtatc ctaagtctcc gctggcgatt tccgcgtacc gcttgcgtat
     4381 taactcacaa tatttttcca catgccctcc tgtcagcaca ctgacttaac cgtggatgca
     4441 agtctaagcc tacgaagata aactctgttt cgcaaggtga ctataccaca ctcatttctg
     4501 caatatcagc gccgcaactg cacgtattcc gttacaatgg cctcctgatt cgaaaggagt
     4561 tttcttatgg cgcttaaagc gacaatttat aaagcgacgg ttaatgtggc cgatctcgac
     4621 cgcaaccagt ttctcgatgc ctctctgacg ctggcgcgcc acccttcaga aacccaggag
     4681 cgtatgatgc tgcgcctgct ggcgtggctg aaatatgctg atgaacgtct gcaatttacc
     4741 cgtggtttgt gtgccgatga tgagccggaa gcgtggctgc gtaacgatca cctgggcatt
     4801 gatttgtgga ttgagctggg gctgccggat gagcggcgga ttaagaaagc ctgcacccag
     4861 gccgcagaag tggcgctgtt tacctataat agtcgggcgg cgcaaatctg gtggcagcaa
     4921 aatcagagca aatgtgtgca gtttgccaat ctttccgtct ggtatctgga cgatgaacaa
     4981 ctggcgaaag taagcgcctt tgccgatcgt accatgacgc tgcaggcaac gattcaggat
     5041 ggcgtgatct ggttatcgga cgataagaat aatctggaag ttaacttaac cgcctggcaa
     5101 caaccttcat gattgtgatt tcccgacatg ttgctattcc cgatggtgag cttgagatca
     5161 ccgccattcg tgcgcagggc gcgggcgggc agcatgttaa taagacctca acggccattc
     5221 atctgcgttt tgacattcgg gcgtccagcc tgccagagta ttacaaagag cgtctgctcg
     5281 ccgccagcca tcatttgatc agcagtgatg gcgtgattgt cattaaggca caggaatacc
     5341 gcagtcagga actgaaccgc gaagccgcgc tagcccggct ggtggcagtg attaaagatt
     5401 taacaacaga acaaaaagcc cgacgaccca cgcggcccac ccgtgcatcg aaagagcgca
     5461 ggctggcatc gaaagcacaa aaatcaagcg tgaaggcgat gcgcggcaaa gtacgcagcg
     5521 gtcgggaata aaaagaagga atagatggtg aaaaaagcga tagtgacagc gatggctgta
     5581 atcagcctct ttactctgat gggatgtaat aaccgggccg aagtcgatac gctttctcca
     5641 gcacaggctg ccgaactgaa accgatgccg caaagttggc gcggcgtgct gccgtgtgct
     5701 gattgtgaag gaatcgaaac ctctctgttc ctcgaaaaag acggaacatg ggtgatgaat
     5761 gagcgttatc tcggtgctcg tgaagaacct tcctccttcg cttcctacgg tacatgggcg
     5821 cgaaccgctg acaagctggt attaaccgac agcaaaggtg aaaagtcata ttatcgggcg
     5881 aaaggcgatg cgctggagat gctcgatcgt gaaggcaatc cgattgaatc gcagttcaac
     5941 tatacgctgg aaccggcaca atccagttta cctatgacgc cgatgaccct gcgaggcatg
     6001 tatttttata tggctgatgc ggcgaccttc actgattgcg cgaccggaaa acgtttcatg
     6061 gtagcgaata acgcagagct ggagcgtggc tacctggctg cgcgcggtca cagtgaaaaa
     6121 ccggtgttac tgtcagtaga aggtcacttt acgcttgagg ctaatccgga tactggtgcg
     6181 ccaaccaaag tattagcgcc cgatacggcg ggtaaatttt acccgaataa ggattgcagt
     6241 agtttggggc agtaaacctg cttaaggcag aaacaaacgc aaaacaggcc agaaggatat
     6301 atttcaacat tttgaatttg cacgtttttt gtaggccgga taaggcgttt acgccgcatc
     6361 cggcaatggt gctcaacgcc tgatgcgact ctggcgcgtc ttatcatgcc tacaaccccc
     6421 ctcatacctt aaggcggata aggcatttac tttatcaccg ggtcaaacca acaaagcgac
     6481 ccgccttgat ataaatccct ggcttcaggt gcccaacata ctgtaactgc gtttctggct
     6541 taaacgcaga gacatcacca atacgcatat gcatcagatc ggcagggcta atccagcccg
     6601 attgcgccag tgtaagtgga tgtccggctt tggcaaatgc atcagtgaca aattccgaac
     6661 aaaaccacga ctttttgtct ccttcgccca cactgcttaa ctgcgctttc gccaggccgc
     6721 tgacgcactg ttggcgaaaa tcctcggaga acggattcag tgagcacatc tggcgagtca
     6781 ccataaaggg aataaattcg acaatgccgc gatagttata accgctatct ttgattttat
     6841 tggcaaacgc ggtgatatct gtggcttgtt gcggggtaag atccgggact cgtaagacga
     6901 aaagcttatc actatgcttc atcgcttttt taagggaaac aatctggacg ccagcgcctg
     6961 tcgcttctgc aacgttatta tcacccagaa agattgcaac gtgactcaca gaggaagtgc
     7021 tgaagacgcg gattccaaat gaggttaccc caaggcttga ggagaacagc aaatcgccgg
     7081 gtttgagatc aggtgccgtt atttctttta ttgattgttc ggtgaaagag ctttgatgct
     7141 ggaatttgac agcccatgtt tttgcctcgg catctactgc tgtggctgat gggtctggct
     7201 ggctgatatc aacggtacaa gccgaaagta aaagaaagct ggggagaagc aggcggcagt
     7261 acgcctttgg tttatccatt ttatacaatc catgtaaaaa agggccctga aattcaggac
     7321 cctttctggc atcagccttt aatctgtttc accagatatt cgacgatgtc accagtctta
     7381 attaactgtt tctcgccgtt gcgacgatat ttatattcga tatcgtcgtt gtcgaggtta
     7441 cggtcgccca gcacaatagt gtgcggaata ccgatcagtt ccatatcagc aaacatcacg
     7501 cccggacgct ctttgcggtc atccagcagc acttcgatac cttgtgcacg cagttcgctg
     7561 tacagtttct cagcaagctc ttgtacgcgg aaggatttgt gcatgttcat cggcagaatc
     7621 gccacctgga acggcgcgat agcgtcaggc catacgatgc cgcgttcgtc gtagttctgc
     7681 tcaatcgccg cagctaccac acgcgttacc ccgataccgt agcaacccat cgtcaggatt
     7741 tggttacggc catcttcacc ctgtacggag gctttcagtg cttcggagta cttggtaccc
     7801 agctggaaga tgtgaccaac ttcgatacca cgtttgatca gcagcgtacc ctggccatcc
     7861 gggcttggat cgccagccac cacgttacgg atatctgcaa cttccggggt agcgacatcg
     7921 cgatcccagt tgataccgaa gtagtgttta ccatcgatgt tagcaccagc agcgaaatca
     7981 ctcatcgccg caacggtacg gtcaatcacc accggaatcg gcatgtttac cggacccagt
     8041 gaacccggac cggctttaac cacagcacga atttcttctt cggtcgcgaa agtcagcggg
     8101 cttgcaacct gcggcagttt ttctgcttta acttcgttca gctcgtgatc accgcgcacc
     8161 agcagcgcaa ccagcgggaa gctgctgcct tcaaccgctt taaccagcag agtcttaacc
     8221 gttttctcaa tcggcagatt gaactgttca accagttccg cgatggtttt cgcgttcggc
     8281 gtatcaacca gcgtcatttc ctgggtagca gcagcgcgcg gttctttcgg cgcgatagct
     8341 tctgccagtt caatgttcgc tgcatagtca gaggtgtcgg agaagaccac atcgtcttca
     8401 ccgctctgcg ccagcacctg gaattcgtga gaggcgctgc cgccgataga accggtgtcg
     8461 gcttgcacgg cgcggaaatc cagccccatg cggctgaaga ttttgctgta ggccgcatac
     8521 attgcatcgt aggtttcctg cagggattcc tgagaagtat ggaaagagta agcatctttc
     8581 atcaggaatt cgcgggaacg catgacgccg aaacgcggac gcacttcgtc gcggaacttg
     8641 gtctggatct gatagaagtt cagcggcagc tgtttgtaag agctaagctc gttacgaatc
     8701 aggtcagtga taacttcttc atgagttggg ccgagtacga acggacgctc gccacggtca
     8761 acaaaacgca gcagttccgg accgtactgt tcccaacgac cactctcttg ccacaaatcg
     8821 gctggctgaa ccaccggcat cgacacctcg attgcaccgg cgttgttcat ctcttcacgc
     8881 acgatgtttt cgactttttt cagaacgcgc acgccggtcg gcagccaggt atataacccg
     8941 gaggccagct tgcggatcat cccggcgcgc agcatcagct gatggctgat cacctcggcg
     9001 tcggcaggtg tctccttgag agtggagagc aggtattggc tagtacgcat gttgttacgg
     9061 ttccagttgg aaggtagaac aggctcaagg cgagcctggg acaaaaaaag tgatttagtt
     9121 taccagtgca aaagaaatgt caaaagagaa gggcgtgaat ttaacgcggt tccagcgcaa
     9181 agacttcaaa acctgcgtcg gtgacgcgcc agcgaacgtt aaaatcatgt agccagacgg
     9241 cataggtttt gcccgtttcc tcacctttat gataggccgg gcgcgggtcc tgcgccagta
     9301 cttcgcggat aaacagcgtt aactgcggat aacgcttctc cagcgtcaaa agctggtttt
     9361 cgacctctgc ggtaaaactc accgccatct ctgcagctgg cgcactttgc gcatagctgg
     9421 cactggcatc gggaagcgat tcggcaaagg ggagatacgg tttgatatcc actaccggcg
     9481 taccatcgac cagatccaga ctgccgagct tcagaatcac gctgtcttta tggcaaacaa
     9541 cctctttcag ctctaccagc gacataccaa ttgggttagg gcggaaagta gagcgtgttg
     9601 cgaaaacccc cattctggcg ttaccgccga ggcgcggtgg acgcacagtc ggacgccagc
     9661 cgccttccat cgtttgatga aagacgaaaa ggatccataa atggctgaac gcttccaggc
     9721 cgcgaacggc gtcggcctgg ttgtagggag caatgagatg cagttcgccg ttggcgcttt
     9781 ttaccagacc tggctggcgc ggaacggcga atttttcttt atagggcgag cgaataacgc
     9841 ctatttgctc gaactggaaa ctgctcattt cgccgtaatg ttaagcgcag agccgataca
     9901 tacagcctga cgatagcagc ctggcgtacc gctggtgact tcgcagctat gcagtaatac
     9961 cgcattggct ttcattttag aggcgttgat ttgcatccgc ttacgcgcgg ttggaatgct
    10021 cggcggagag tcctgattag aggcctggca agagtcgcca ctgacttcac cgagatcgcg
    10081 gaacggtttg ccgactaatt cttctgcatt ggtataaatt cggaccggcg tggcgcgcgg
    10141 cgctttcggt tttgcaggct ccgctttcgg ctggggtgca gtgctttgaa cgggttcgac
    10201 aggggatctg cttaacatgg aacagccgct tagcatgagt gctactaaac agatcggtaa
    10261 agcacgcata gtatttcctc aatgtatgat caaaacgtca atattgaatc aggagcttgt
    10321 aaaaatgaca agacgggcaa gtgcccatcc tgaatgatat tacaaattgt ggaaacagcc
    10381 taaaaattac cagcctttaa cagcgccgcc gttaaacact ttgtttgctg cttcgtaaac
    10441 ttcatcagac tgataagcct ggacgaattt cttcacgttc tcggcgtctt tgttatcttc
    10501 acgcgttacg atcaggttta cgtacgggga gtctttatct tcgacaaaga taccgtcttt
    10561 cgctggagtc aggccaatct ggctggcata ggtggtattg ataactgcca gagcgatttg
    10621 cgcgtcgtcc agagatcgag gcagctgcgg tgcttccagc tcaacaattt tcagattttt
    10681 tgggttctca acaacatcaa gtacggtcgg cagcaggcca acgccatctt tcagtttgat
    10741 caagcccact ttttgcagca gcagcagtga acgaccaagg ttagttggat cgtttggcac
    10801 ggcaacctgc gaaccatcct gcagttcatc cagtgatttg attttcttgg agtaaccagc
    10861 aatcggataa acaaaagtgt tgcctactgc gaccagtttg tagccacgat ctttcagttg
    10921 ctgatcaagg tacggtttat gctggaaggc gttggcgtcg atatcgcctt tgctcaatgc
    10981 ttcgtttggc agaacatagt cgttgaaggt taccagctca acgtctaggc catatttgtc
    11041 tttcgcaact ttctgcgcga cttctgcaac ctgctgttcg gcaccaacaa tcacgccgac
    11101 tttaatgtgg tttggatctt tttcatcctg accgcagcct accagtgcca gtgatccaat
    11161 cagggctccc actgccgcaa aggttttgaa tttgaacgcc ataccttatt ccttcttcaa
    11221 ttatttatgt tgtgttgaac gttacttgcg agtgacagcc cggacgatgc ggtcgcctgc
    11281 gaactgaatt aaataaacca gaatgaccag caataccagt accgtattca tcaccgtcgc
    11341 gttatagccg atgtagccat actgatagcc aatctgacct aaaccaccgg caccgacagc
    11401 accacccatc gcggaataac cgaccagggt aatcagggtg atagttgccg cattcaccag
    11461 acccggcaat gcttccggta acagcacttt acggacgatc tgcatcgccg tggcacccat
    11521 tgcacgggaa gcttcaatta acccggttgg gatctccagc agagcgttct cgaccatacg
    11581 ggcaataaac ggtgctgcac caacggttaa cggaacaatc gctgcctgca aaccaatcga
    11641 tgtaccaaca ataacgcggg taaacggaat cgtccatacc agcaagataa tgaacgggat
    11701 agaacggaaa atgttcacaa tcgcagaaac ggtacgatac agcttcgcgt tagcaataat
    11761 ttgccccgga cgcgtgacat aaagcagaac gccaaccggc agaccaatca caaagccaaa
    11821 aaaaccggat acgaaggtca ttgccagcgt ttcccatacg ccacgaacca gcagccacat
    11881 catcggctca gacataaccc agtacctcta cttttacatg gtgttcctgc agccaggcaa
    11941 tggcggcttg cgtatcttgt tgtgtgccgt gcatttcagt cagcatgatg ccgaacttaa
    12001 cgccaccggc gtagtccatc tgcgcgctaa taatgttgtt gttgacgttg aaacgacgcg
    12061 cggtttcaga aagcagtggg gcatcgaccg attgaccggt aaactccaga cgcagcatcg
    12121 gcacgcagtc agtaaatggc tccgcttgca gacgttcctg gtaatcttcc gggatatcca
    12181 gatgcagggt cgactgaata aacttctgcg ccagcggcgt tttcggatgc gagaacactt
    12241 cacttaccgt gtcctgctcg atcagttcgc cattgctgat gaccgccacg caatcacaaa
    12301 tacgcttcac aacgtccatt tcgtgggtga tcaacagaat cgtcaaaccc agacggcggt
    12361 taatgtcttt cagcagttcg agaatagaac gtgtcgttgc cgggtccagc gcgctggtgg
    12421 cttcatcaca cagcaatact ttgggattgc tggctaatgc acgggcaatc gccacacgtt
    12481 gtttctgccc accggaaaga ttcgacgggt agctatcatg cttatcgcca agaccaacca
    12541 atgacagcaa ttccgtcacg cgacgtttga tctcgtcttt cggtgtgttg tccagctcca
    12601 gcggcagagc cacgttgcca aaaacagtac gcgaagagag caggttaaaa tgctggaaaa
    12661 tcataccaat ctggcggcga gctttggtca actcggattc tgacagcgtg gtcagttcct
    12721 ggccatcgac cagcacgcta ccctcggttg ggcgctccag caggtttaca caacgtataa
    12781 gcgtactctt acccgcgcct gaggcaccga taacgccata aatttgtcca gctggcacat
    12841 gcaggctgac gttgttcaac gcctggatgg tgcgggtgcc ctggtggaac actttggtga
    12901 tattcgaaag ttttatcatt gattatttat tatcgtcatt aagttagtcg tggcatctcg
    12961 aatgcctgaa acgggcaacg ccgtcaatga aatggatgtt aaggcatcca gacgtctaaa
    13021 tcaatcaggt ttatgcgaag agcactttct tgcaggtcga aacatgcgat actagcgtca
    13081 catgccttat taaggagcta taaaaggtgg caaagagcgt acccgcaatt tttcttgacc
    13141 gtgatggcac cattaatgtc gatcacggct atgtccatga gatcgacaac tttgaattta
    13201 tcgacggtgt tattgacgcc atgcgcgagc taaaaaaaat gggctttgtg ctggtggtag
    13261 taaccaacca gtctggcatt gctcgcggta aatttaccga agcacagttt gaaacgctga
    13321 ccgagtggat ggactggtcg ctggcggacc gagatgtcga tctggatggt atctattatt
    13381 gcccgcatca tccgcagggt agtgttgaag agtttcgcca ggtctgcgac tgccgtaaac
    13441 cacatccggg gatgcttttg tcagcacgcg attatttgca tattgatatg gccgcttctt
    13501 atatggtggg cgataaatta gaagatatgc aggcagcggc tgcggcgaac gtgggaacaa
    13561 aagtgctggt gcgtacgggt aaacctatta cgtctgaagc agaaaacgcg gcggattggg
    13621 tgttaaatag cctggcagac ctgccgcaag cgataaaaaa gcagcaaaaa ccggcataat
    13681 gattaaaaga tgagcgattg aaataaaaat gcatttttcc acttgtcttc ctgagacgac
    13741 tccctataat gcgcctccat cgacacggcg gatgtgaatc acttcacaca aacagccagt
    13801 tcggttgaag agaaaaatcc tgaaattcag ggttgactct gaaagaggaa agcgtaatat
    13861 acgccacctc gcgacagtgc gctaaagcgc gtcgcaactg ctctttaaca atttatcaga
    13921 caatctgtgt gggcgctcga agatacggat tcttaacgtc gcaagacgaa aaatgaatac
    13981 caagtctcaa gagtgaacac gtgattcatt acgaagttta attctttgag catcaaactt
    14041 ttaaattgaa gagtttgatc atggctcaga ttgaacgctg gcggcaggcc taacacatgc
    14101 aagtcgaacg gtaacaggaa acagcttgct gtttcgctga cgagtggcgg acgggtgagt
    14161 aatgtctggg aaactgcctg atggaggggg ataactactg gaaatggtag ctaataccgc
    14221 ataatgtcgc aa
//
LOCUS       DAJVUN010000104        14199 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.104, whole genome shotgun sequence.
ACCESSION   DAJVUN010000104 DAJVUN010000000
VERSION     DAJVUN010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.104"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            100..420
                     /locus_tag="OQQ76_002618"
                     /pseudo
     CDS             100..420
                     /locus_tag="OQQ76_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001475310.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            398..940
                     /gene="hipA"
                     /locus_tag="OQQ76_002619"
                     /pseudo
     CDS             398..940
                     /gene="hipA"
                     /locus_tag="OQQ76_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416024.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system serine/threonine
                     protein kinase toxin HipA"
     gene            1204..1296
                     /locus_tag="OQQ76_002620"
                     /pseudo
     CDS             1204..1296
                     /locus_tag="OQQ76_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226947.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            1303..1479
                     /locus_tag="OQQ76_002621"
                     /pseudo
     CDS             1303..1479
                     /locus_tag="OQQ76_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310134.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            1813..4092
                     /gene="ydeP"
                     /locus_tag="OQQ76_002622"
     CDS             1813..4092
                     /gene="ydeP"
                     /locus_tag="OQQ76_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance putative oxidoreductase YdeP"
                     /protein_id="HCS1969072.1"
                     /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKP
                     EGFDCPGCAWPDPKHSASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE
                     LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA
                     FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN
                     PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY
                     NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW
                     KDIERISGLSQTQIAELADAYAAADRTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI
                     GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQA
                     ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP
                     VLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS
                     VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF
                     ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK
                     ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD
                     PLSGIPGYKSIPVELEPSN"
     gene            4340..4537
                     /gene="safA"
                     /locus_tag="OQQ76_002623"
     CDS             4340..4537
                     /gene="safA"
                     /locus_tag="OQQ76_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system connector SafA"
                     /protein_id="HCS1969073.1"
                     /translation="MHATTVKNKITQRDNYKEIMSVIVVVLLLTLTLIAIFSAIDQLG
                     ISEMGRIARDLTHFIINSLQD"
     gene            4612..5373
                     /gene="ydeO"
                     /locus_tag="OQQ76_002624"
     CDS             4612..5373
                     /gene="ydeO"
                     /locus_tag="OQQ76_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response transcriptional regulator
                     YdeO"
                     /protein_id="HCS1969074.1"
                     /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY
                     ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN
                     HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCL
                     YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA
                     FRKHFGNSPKRVSKEYRCQSHTGMNTGNTMSALAI"
     gene            5387..6022
                     /locus_tag="OQQ76_002625"
                     /pseudo
     CDS             5387..6022
                     /locus_tag="OQQ76_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707596.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SPASM domain-containing protein"
     gene            complement(5988..6110)
                     /locus_tag="OQQ76_002626"
     CDS             complement(5988..6110)
                     /locus_tag="OQQ76_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969075.1"
                     /translation="MTKHPTGIYVGCLVKVIRRRLRMELKESVINYSPFVLQHP"
     gene            6313..7998
                     /locus_tag="OQQ76_002627"
     CDS             6313..7998
                     /locus_tag="OQQ76_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HCS1969076.1"
                     /translation="MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILG
                     VVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISANKTWLIKLLTIR
                     WREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
                     SLSMLITFTVILWQSAGTLSFTVSGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRP
                     LNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELRDNFHTIKENWHRLMNRQR
                     WLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDE
                     LAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSP
                     GKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICK
                     ALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWI
                     FLDETTSHLEEQEAIRLLRLVREKLSTSGVIMVTHQPGVWNLADDICDISAVL"
     gene            8036..10408
                     /locus_tag="OQQ76_002628"
     CDS             8036..10408
                     /locus_tag="OQQ76_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS1969077.1"
                     /translation="MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVN
                     GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY
                     QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
                     RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPD
                     FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALS
                     KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR
                     TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ
                     KFAVGDVSHQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDN
                     YTLYMADHISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFADQTSMITAGYNRY
                     YGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKNVIARAN
                     YVYRAAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQ
                     IVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT
                     HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSW
                     TPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF"
     gene            10465..13248
                     /locus_tag="OQQ76_002629"
     CDS             10465..13248
                     /locus_tag="OQQ76_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HCS1969078.1"
                     /translation="MRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGLRYMI
                     YPHAQPKDQVNLWLQIHTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETFESMG
                     LRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAERGVI
                     TEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQRWYQP
                     NNMTFIVVGDIDSKEALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDKENRV
                     NGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFSQRLQERIQSGELKTISGGTARSVK
                     IAPDYQSLFFRVNARDDNMQDAANALMSELATIDQHGFSAEELDDVKSTRLTWLKNAV
                     DQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQLRKNQ
                     DAFWEQMVNNELAAKKALSPAAILALEKEYANKKLAAYIFPGRNLSLTVDADPQAEIS
                     SKETLAENLTSLTLSNGAKVILAKSAGEEQKLQITAVSNKGDLSFPAQQKSLIALANK
                     AVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLINQRIT
                     HSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIVQFTA
                     ADALAADRQLFSSPADITFVIVGNVSEDKLVALITRYLGSIKHSDSPLAAGKPLTRAT
                     DNASVTVKEQNEPVAQVSQWKRYDSRTPVNLATRMALDAFNVALAKDLRVNIREQASG
                     AYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQELNEYQ
                     QNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVKQYLS
                     HPVNTYTGVLLPK"
     gene            13610..>14199
                     /locus_tag="OQQ76_002630"
     CDS             13610..>14199
                     /locus_tag="OQQ76_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS1969079.1"
                     /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVN
                     MVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG
                     PVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEA"
BASE COUNT         4076 a         3101 c         3239 g         3783 t
ORIGIN      
        1 cagcgaaaag ctcctgactc aaacgtgact ggcgaactgc gcaatagcat aagcgggaag
       61 ggtatcgtga gcgcaaccgc caggacagat gtagagctgg atggcgataa tagccgcttt
      121 ggggtgaaaa cctacctgaa cagccatcac cagcgtgacg atggtaaaca gcgtgagttc
      181 cagccttaca ttgaagcgaa ttggatcaac aacagcaaag tctacgccgt gaagatgaat
      241 ggtcaaaccg taggccgtga aggtgcgcgt aatctcggtg aagtacgtac cggggttgag
      301 gcgaaagtaa ataacaacct tagcctgtgg gggaatgtcg gtgtgcaact aggtgataaa
      361 ggctatagcg atactcaggg catgctggga gtgaaattta ccttcatctg tgaaatatga
      421 atcagatgga ggcccaggca tcgcgcggat catggcgttt ttgatggggt ccagcgaggc
      481 gcttcgcgat cgttatgatt ttatgaaatt ccaggtcttc cagtggttga ttggcgcaac
      541 ggatggccat gcaaaaaact tctccgtatt tattcaggct ggcggcagtt atcgactcac
      601 gccattttac gacatcattt cagcatttcc ggtccttggc ggtacgggaa tacacatcag
      661 cgatctcaaa ctggcaatgg ggcttaacgc atccaaaggc aaaaaaatgg caatcgataa
      721 aatttatccg cgacattttt tggcgacagc aacggtgctg agattcccgg aagtgcagat
      781 gcatgaaatc ctaagtgact ttgccagaat gattccggca gcactggata acgtgaagac
      841 ttcattaccg acagattttc cggagaacgt ggtgacggca gttgaaacca atgtgttgag
      901 gttgcatgga cggttaagcc gagaatacgg tagtaagtga gatatggggt ttggtcattg
      961 ttaatgagca accaaccatg accgccaacg actggattct cccttggttt atgttggtgc
     1021 gcataatgta tattatgtta aatcatatct gagtgatgcg aagtgctttt ctggtagtcg
     1081 ttattcgttc agggttccag aacttaagcc tctcctcttt cataattggc ctgtgcatga
     1141 cggatatagg ctggctggta tgcagatttg ccgtttgccg catcttccca gcgttgaaga
     1201 ctcaagctgg caaaccgcgt gcaaatgagc acgccctctt tccatcaaca cttcaggcag
     1261 cttgcgggaa tgagtccact acggtatcag aaatgggaag agggtgtctc tctgatgcgt
     1321 aatggaaaaa tactggctac gggagaaaat gtctccctgg ggacagtaaa taaaagcaaa
     1381 atatctctgg gtttaagcgc aacctatgga caaacaggaa acaaggttgc agccggaacc
     1441 gtccagtcag tcattggtgt cacttttatc tatgaataat tgtgattttg atcttagtct
     1501 atgcgctcca ttcacgaaaa ttgcgcggat aattattttg tgaaggctat tatcctacac
     1561 ctgtaagaaa atccgcgcac aattgaagcc agagtcttat tttttatatt gaaaaatatg
     1621 ttaatttaaa cactatgaga gatgatgctt aacttatcgt atttaatcta ttgtttaacg
     1681 ataatagatt aaaaatagaa agagagtagt cccctactct tatatatcca tgttggcgat
     1741 aatccctttg tatgtactgt gcatcatcgc tattacaaat cctaataatt catttccaca
     1801 caggataagt agatgaagaa aaaaattgaa tcctaccagg gtgctgcagg tggttggggt
     1861 gctgttaaat ccgtagcgaa tgcagtacgt aagcagatgg atatacgcca ggatgttatt
     1921 gccatgtttg acatgaataa gccagagggc tttgactgtc cgggttgtgc atggccagat
     1981 cctaagcaca gtgcgtcatt cgacatttgt gaaaacggcg caaaagcaat cgcctgggaa
     2041 gtcacggata agcaggtaaa tgcctctttc tttgctgaga atacggttca atcattactt
     2101 acctggggag atcacgagct tgaggctgcg ggacgtctca ctcagccttt gaaatatgat
     2161 gccgtcagcg actgttacaa gccattaagc tggcaacaag ctttcgacga aattggcgca
     2221 cgccttcaaa gctatagtga tcccaatcag gttgaattct atacttcggg ccgcacttcc
     2281 aatgaagctg cctttcttta tcagcttttt gcccgtgaat acgggagcaa taactttccc
     2341 gactgctcca acatgtgcca tgaaccgacc agtgtgggtt tggcagcgag tatcggcgtg
     2401 ggtaaaggga ctgtgttgct ggaagacttt gagaagtgcg atttagtcat ttgcattggg
     2461 cataaccctg gtacaaacca cccccgcatg ctgacttcgt tgcgcgcttt agtgaaacgg
     2521 ggagcgaaaa tgatcgccat caatcctcta caggaacgtg gcctggagcg atttaccgca
     2581 ccgcaaaacc cgtttgaaat gctgacgaac tctgagactc agttggccag tgcgtactac
     2641 aacgtgcgca ttggtggcga tatggcgttg ctcaagggga tgatgcgcct gttaattgag
     2701 cgcgatgatg ctgcaagtgc cgcaggtcgg ccctcattgc ttgatgacga atttattcaa
     2761 acgcataccg tcggctttga cgagctacgc cgtgacgttc tcaattccga gtggaaagat
     2821 atcgaacgta tttctggact aagtcagaca caaatcgccg aactggctga cgcatatgcc
     2881 gctgccgatc gcaccattat ctgttacgga atggggatca ctcagcacga acatggtacc
     2941 cagaatgtac agcaactggt caatctgctg ttgatgaaag gtaacattgg caagcctggt
     3001 gcgggtatct gcccactacg aggtcactct aatgtacagg gcgaccgaac cgtcggtatc
     3061 accgagaaac cgtctgcaga gtttctggct cgcctgggtg agcgctatgg cttcacccca
     3121 cctcatgcac ctggacatgc tgcaattgcc agcatgcaag caatatgcac ggggcaggct
     3181 cgagcattga tctgcatggg gggcaacttt gcactggcaa tgccagatcg ggaagcgagc
     3241 gctgtaccgt taacgcaatt agatttggcg gtacacgtag ccactaagct taaccgctct
     3301 catctgctga ccgcacggca tagctatatt ctgccggttc tggggcgtag cgagattgac
     3361 atgcaaaaaa gcggtgcgca ggcggtaacc gttgaggatt caatgtcgat gattcatgcc
     3421 tcgcgtggcg tgttaaaacc cgccggtgta atgctgaaat cagagtgtgc agtggtcgcg
     3481 ggaatcgcgc aggcagcact accccagagc gtggtagcct gggagtatct ggtggaagat
     3541 tatgatcgca ttcgcaatga cattgaagct gtgttaccag agttcgccga ctataaccag
     3601 cgcatccgac atcctggagg ttttcacctg ataaatgcag ctgctgaaag gcgctggatg
     3661 acgccgtcag gtaaggctaa tttcattacc agcaaagggc tgttagaaga tccctcttca
     3721 gcgtttaaca gtaagctggt catggcgaca gtacgcagcc acgatcagta caacacgacg
     3781 atttatggta tggatgatcg ctatcgaggg gtattcggtc aacgagatgt ggtctttatg
     3841 agtgctaaac aagctaaaat ttgccgtgta aaaaacggcg aaagagttaa tcttattgcg
     3901 cttacgccag acggtaagcg cagctcacgc cgcatggata gattaaaagt ggtcatttac
     3961 cctatggctg accgctcact ggtgacctat tttccagaat cgaatcacat gctaactctt
     4021 gataaccacg atccattaag tggcattcct ggttataaaa gtattccggt tgaattagaa
     4081 ccatcaaatt aattcgcctc ctcatttctt ctgctgtcat ccgcacagca gaagaatttc
     4141 tcattgacta ttatcgcgca atttgctcac attgatcaaa ttaaaccaca cactataaga
     4201 tataaacctc tgcctacagc tgtaagaaac tccgctcagt actgaagtgc cagtcctatt
     4261 tcctcttttc tccagcctgt tatattaagc atactgatta acgattttta acgttatccg
     4321 ctaaataaac atatttgaaa tgcatgcgac cacagtgaaa aacaaaatca cgcaaagaga
     4381 caactataaa gaaatcatgt ctgtaattgt ggttgtctta ttactgaccc ttacgttgat
     4441 agccattttt tcggcaattg atcagctggg tatttcagaa atgggtcgca ttgcaagaga
     4501 tcttacacat ttcattatca atagtttgca agactgaaaa taaacagcaa attataaata
     4561 tgaaatgtta aaaaagtatc gataaaaact ttattgtttt aaggagataa aatgtcgctc
     4621 gtttgttctg ttatatttat tcatcatgcc ttcaacgcta acattttaga taaagattac
     4681 gccttctctg acggcgagat cctgatggta gataacgctg ttcgtacgca ttttgaacct
     4741 tatgagcggc attttaaaga gatcggattt actgaaaata ccattaaaaa atatctacaa
     4801 tgcactaaca tccagacagt gacggtgcct gttcctgcga agtttttacg tgcttcaaat
     4861 gtaccgactg gattgcttaa tgaaatgatt gcttatctca actcggaaga acgcaatcat
     4921 cataattttt cagaactttt gcttttttct tgcctgtcta tttttgccgc atgcaaaggt
     4981 ttcattacac tattaactaa cggtgtgcta tccgtttccg gaaaagtgag aaatattgtc
     5041 aacatgaagc tggcgcaccc atggaagctg aaagatattt gtgactgcct gtacatcagt
     5101 gaaagcctgt tgaagaaaaa actaaagcaa gagcaaacga cattctcaca gattctatta
     5161 gatgccagaa tgcagcacgc aaaaaatttg atacgcgtag aaggttcagt caataaaatt
     5221 gccgaacaat gtggttatgc cagtacttct tattttattt atgcgttccg caaacatttc
     5281 ggcaacagtc cgaagagagt ttctaaggag taccgttgtc aaagtcacac gggtatgaat
     5341 acgggcaaca cgatgagtgc tttagctatt tgattatttg ctaactttaa aatctatcgg
     5401 cagtaaacat atgcaattta tcgaattgct cgaaaccggg acgccgaata ttgatttcag
     5461 tggtcatagt gagaacacat tccgtatcat tgatttttct gtgcctccca cggcttatgg
     5521 caagtttatg tcaaccattt ttatgcaatg ggttaaaaac gatgtgggtg aaattttcat
     5581 tcgtcagttt gaaagctttg tcagccgttt tttggggaat gggcatacaa gttgtatttt
     5641 ccaggagtcc tgcaaggata atctggttgt tgaaagtaat ggagacattt acgaatgcga
     5701 ccattttgtc tatccacagt acaaaattgg aaacattaat aaatctgaac tcaaaacgat
     5761 gaacagtgta caactgacag cgcaaaaaaa acggatttca gcgaaatgtc agcaatgtgc
     5821 atataaacct atctgcaatg gcggttgtcc taagcatcgt attactaaag taaacaatga
     5881 gactgtttct tatttttgcg aaggttataa aatccttttt tcaaccatgg taccttatat
     5941 gaacgccatg gttgagttag ctaagaacag agtaccgctt taccacatta tggatgttgc
     6001 aaaacaaatg gagaataatt aataacgctc tcttttaact ccattcttag cctccttctt
     6061 atgaccttaa caaggcaccc gacataaatt cctgtcgggt gtttcgtcat catcatcttc
     6121 ccttgcgaaa atcctggctt acgtggtatg cgtcagggca ttagcaatac ccttgattat
     6181 caatagcata accataacca ctgaaaatta aaaatttcta tatatttcat attgttaaat
     6241 gatacttaaa taaatttcat cagtaaatca ttgccataga taatcattgg atggcacaat
     6301 caattttcgc taatgataac cattcccatt acgttttgta tgttgatagc aaagtatctc
     6361 tgtctgctga agcccttttg gctgcgtaag aataataaaa cttcagtgtt gttaatcatt
     6421 attatcctcg caatgatcct tggcgtggtt aaaattcagg tctggttaaa cgactggaat
     6481 aatgattttt tcaatgcgct aagccagaaa gaaaccgata agctttggca gcttgttctt
     6541 tggttccctg ccctgctggg gatctttgta ttaatatccg caaacaaaac atggttaatt
     6601 aaactactga ctattcgctg gcgcgaatgg ttaacagatt actaccttaa tcgctggttt
     6661 gcagataaaa actactactt cacgcagatc tacggcgagc ataaaaatac agataaccct
     6721 gaccaacgta tcgctgaaga cattctctta ctgatcagca aaacgctcag tctttcattt
     6781 ggcttcatcc agtcacttag catgctgatc acctttaccg ttattctttg gcaaagcgcg
     6841 ggtacgctct cattcactgt tagtggaaca gaatggaata tccaggggta tatggtctat
     6901 accgtcgtgc tcattgtgat cggtggaact ttatttaccc ataaggttgg taagcgtatt
     6961 cgtccgctta atgtggaaaa acaacgtagc gaagcgacat ttcgaactaa tcttgtgcag
     7021 cataataagc aggcagaact gattgcgcta agcaatgctg agtctctaca acgccaggag
     7081 ttgcgcgaca attttcatac cattaaagag aactggcatc gtttaatgaa tcgtcagcgg
     7141 tggcttgatt actggcaaaa tatttattcg cgctcgctta gcgttcttcc ctactttctg
     7201 ttattgccgc agtttattag cgggcagatc aatctgggcg gactgatgaa atcgcgccag
     7261 gcatttatgc tagtatcgaa caatttaagc tggtttattt ataaatatga cgaacttgct
     7321 gaactggctg cggttatcga tcgcttgtat gagttccatc aactcactga acagcgccct
     7381 acgaataagc ctaaaaattg ccaacatgcg gtacaagtgg ctaatgcgag tattcgtacg
     7441 cctgataata agatcatatt agagaacttg aactttcatg tttcgccagg caaatggcta
     7501 ttactgaaag gctactctgg tgcgggaaaa accacactgc ttaaaacatt atcccactgc
     7561 tggccgtggt ttaaaggtga tattttttct cctgctgaca gttggtatgt gtcacaaaca
     7621 ccgttaatca aaaccggctt actgaaagag attatttgta aagcacttcc cctgcccgta
     7681 gacgataaat cgttgagcga agtactgcat caggttggtc ttgggaaatt ggctgcgcgt
     7741 attcatgacc acgatcgctg gggagatatt ctttccagcg gcgaaaaaca acgtatcgcc
     7801 ctggcacgat taattttacg acgtccgaaa tggatatttc ttgacgaaac tacctctcat
     7861 cttgaggaac aagaggctat ccgcttactg cgtttagtgc gtgaaaaact atccacaagc
     7921 ggcgtcatta tggttacaca tcaacccggt gtctggaacc tggccgatga tatttgtgac
     7981 attagcgcgg ttttataaaa acaataaaag ccctgctgta cggagatata aataaatgaa
     8041 gcgagttctt attcctggcg tcattttatg tggcgctgat gtggcgcagg ccgtcgatga
     8101 caaaaacatg tacatgcatt tttttgaaga gatgacggtc tatgctcctg tccctgtacc
     8161 cgtaaacggc aacacgcatt acaccagtga aagcatcgag cgtttaccga ccgggaatgg
     8221 caatatcagc gatctgctga gaaccaaccc tgcggtacgc atggattcaa cgcaaagtac
     8281 ctcgttgaac cagggagata ttcgccctga gaaaatctct attcacggtg cgtcgcccta
     8341 ccagaatgcc tatttgattg acggtattag tgcaactaat aacctgaacc cagcgaatga
     8401 gtccgatgcc agtagtgcaa ccaatattag cgggatgtca caggggtatt atcttgatgt
     8461 cagcttactg gacaatgtga cgctttatga cagttttgtg ccggttgaat ttggtcgctt
     8521 caatggcggg gtaattgatg caaagatcaa acgcttcaac gctgatgata gcaaggtgaa
     8581 attgggttat cgcactacgc gttcggactg gttaacatcg catatcgatg agaataacaa
     8641 gagcgcattt aatcaaggtt cttcaggaag tacttatttc tctccagatt ttaaaaagaa
     8701 cttttatacc ttgtcgttta atcaggagct ggctgataac tttggcgtta ccgccggttt
     8761 atcgcgccgc cagtctgata tcacccgcgc ggattatgtt tcgaatgacg gcattgtcgc
     8821 cggtcgggca cagtataaaa acgttatcga tactgcattg agcaaattta cctggtttgc
     8881 cagcgaccgc tttacccacg atttaacctt aaaatatacc ggctccagcc gtgattataa
     8941 taccagcacc ttcccgcagt ctgatcgcga aatgggtaat aaatcctatg gtcttgcatg
     9001 ggatatggat acgcaactcg catgggccaa actacgtacc accgttggtt gggatcatat
     9061 tagtgattat acccgtcacg atcatgacat ctggtacacc gaactttcat gtacatatgg
     9121 tgatattaca gggcgttgta cccgtggcgg attaggacac atttcccagg ctgtagataa
     9181 ttacaccttc aaaacacgcc tggactggca aaaattcgcc gtgggtgatg tttcgcatca
     9241 accctactcc ggcgcggaat acatctattc cgatgcatgg actgaacgcc ataaccagtc
     9301 tgaatcctat gtgattaatg ctgcaggaaa gaaaactaac cataccattt accataaagg
     9361 taaaggcagc ctaggaattg acaactacac gctgtatatg gcggatcaca ttagctggcg
     9421 gaatgtgtcg ttaatgcccg gtgtgcgtta tgactatgac aactatctgt caaaccacaa
     9481 tatctccccg cgctttatga cggaatggga tatttttgct gatcaaacct caatgattac
     9541 cgccggttat aaccgttact atggcgggaa tattcttgat atgggattac gtgatatccg
     9601 caatagctgg acggaatcgg tatcaggtaa taaaaccctg acgcgttatc agaatttgaa
     9661 aacgccttat aacgatgaac tggcaatggg attgcagcaa aaaatcggta agaacgttat
     9721 tgcacgcgca aactatgttt accgtgcagc gcatgatcaa atcagcaaaa gcagtcgtac
     9781 cgacagcgcg actaaaacca ccattactga atataacaac gatggcaaaa ccaaaacgca
     9841 ttcgtttaac ctcagttttg aactggccga acccctgcat atccgccagg tagatattaa
     9901 cccgcaaatt gtctttagct atatcaagag caagggcaac ttgtcgttaa acaatggtta
     9961 tgaggagagc aataccggtg ataaccaggt ggtttataac ggtaatctgg tctcttacga
    10021 tagcgttcca gtggcagatt ttaataaccc attaaagatc tccttaaaca tggatttcac
    10081 gcatcaaccg agcgggttag tgtgggcgaa tacgctggcc tggcaagaag cgcgtaaagc
    10141 tcgcattatc cttggtaaga caaatgcgca atacatcagc gaatattcag attacaagca
    10201 gtatgttgac gaaaaactgg atagcagcct gacctgggac acccgcttgt cctggacgcc
    10261 acaatttctg aaacaacaaa acctgacgat cagtgccgat attctcaatg tactggatag
    10321 caaaaccgct gttgatacaa cgaataccgg tgtggcgacc tacgccagtg gccgtacttt
    10381 ctggcttgat gtcagcatga aattttaata gttcggattt tacttaaccg gataaattcg
    10441 cccggttttc gcatggagat aattatgaga aacctctgtt tcttactgac gttagtggca
    10501 actctgttgc tccccgggcg gctgattgcc gccgccttac cgcaggatga aaagttaatt
    10561 accgggcaac tggacaatgg cttgcgatat atgatttatc cgcatgctca accaaaggat
    10621 caggtaaatt tatggctgca aattcatacc ggttcattgc aggaagaaga caatgagcgc
    10681 ggcgtggctc attttgtaga acatatgatg tttaacggca caaaaacatg gccgggtaat
    10741 aaagtcatcg aaacatttga gtcaatgggc ctgcgttttg gtcgcgatgt taatgcctat
    10801 accagctatg acgaaacggt gtatcaggtg agtttgccga ctacgcagaa acaaaatctg
    10861 caacaagtga tggcaatctt cagtgaatgg agtaatgccg caacctttga aaaactcgaa
    10921 gtagacgctg aacgtggcgt aattactgag gaatggcgtg cccatcagga tgcgaaatgg
    10981 cgcacctctc aggcgcgccg ccctttcctg ctggctaata cccgtaattt agaccgtgaa
    11041 cctatcggcc tgatggatac tgtcgccacg gtcacaccgg cacaattgcg ccaattttat
    11101 caacgctggt atcaaccaaa taatatgacc tttatcgtgg tcggcgatat cgacagtaaa
    11161 gaagcgctgg cgctgataaa ggataattta agtaagcttc cggctaacaa agcagctgaa
    11221 aatcgcgtct ggccgacaaa agccgaaaac cacctgcgct ttaatatcat taatgataaa
    11281 gaaaaccggg tgaacggcat cgcactctat tatcgcctgc caatggtaca agtgaacgat
    11341 gagcaaagct ttatcgaaca agctgaatgg agcatgttag ttcagctgtt cagtcaacgt
    11401 ctgcaggaac gcatacagtc gggcgagttg aagactattt ctggcggcac tgcgcgcagc
    11461 gttaaaattg cacccgatta tcagtcgctg tttttccgtg taaatgcacg agacgataat
    11521 atgcaggatg ctgcgaatgc attaatgtca gagttggcaa ccattgatca gcatggtttt
    11581 tctgctgaag aactcgatga tgtcaaatct acccgcctca cctggctgaa aaatgcggtt
    11641 gatcagcaag ctgaacgtga tttacgtatg ctgaccagtc gcctggcatc cagctcatta
    11701 aataatacgc cgttcttgtc gccggaagag acatatcaac tttcgaaacg tctgtggcag
    11761 caaattaccg tgcaaagtct ggcggaaaaa tggcagcagt taagaaagaa ccaggacgca
    11821 ttttgggagc aaatggtaaa caatgagctt gccgccaaaa aagcattgtc tcctgcggct
    11881 atcctggcgc tggaaaaaga gtacgccaac aaaaagctgg cggcttacat cttcccaggc
    11941 agaaatttat cgttaacagt agacgctgac ccacaggcgg aaattagcag caaagaaacg
    12001 ctggctgaga atctgacatc attaacactt tccaatggtg ccaaggttat tctggcaaaa
    12061 tccgcgggtg aagagcaaaa gctacaaatt actgccgtat cgaataaagg cgatttaagt
    12121 ttccctgcgc agcaaaaatc acttatcgcg ctggcaaata aagcagtaag cggaagcggc
    12181 gttggtgagc tctcctcttc cagcctgaaa cgctggagtg cggaaaattc ggtaaccatg
    12241 agcagtaaag tcagtggcat gaatacgttg ctctccgtta gcgcgcggac taataaccct
    12301 gaacctggtt ttcagttgat taaccagcga atcacccaca gcacgattaa cgacaatatt
    12361 tgggcatcgc tacaaaatgc tcaaattcag gcgttgaaaa cgctcgacca gcgtccagcg
    12421 gagaaattcg cccagcagat gtatgagacg cgctatgctg atgaccgcac gaaattactg
    12481 caagaaaatc agattgtaca gtttactgcc gcagatgcgc tggctgccga tcgccagttg
    12541 ttttcatctc cagcggatat cacgtttgtc attgtcggta atgtctcaga agacaaactc
    12601 gtggcgttaa ttacgcgtta cttaggatca atcaaacact ctgattcgcc attagccgca
    12661 ggtaaaccat taactcgcgc gacggacaac gcatcggtta ctgtaaaaga acaaaatgaa
    12721 cctgtggcac aggtttcaca gtggaagcgt tatgattccc ggacacctgt taatctggcg
    12781 acgcgtatgg cgctcgatgc ttttaacgtc gcactggcaa aagatctacg tgttaatatt
    12841 cgtgaacagg catctggagc atacagcgtt tcttctcgcc tctcggttga tcctcaggcc
    12901 aaagatatca gtcatttgct ggcttttact tgtcaaccag aacgacatga tgaactgtta
    12961 acgttagcga atgaagtgat ggttaagcgt ctggctaaag ggatcagtga gcaagaactg
    13021 aatgaatacc agcaaaacgt tcagcgcagc ctcgatatcc aacagcgtag cgttcaacaa
    13081 ttagcgaaca ctattgtaaa tagtcttatt caatatgacg atcctgcagc atggactgag
    13141 caggagcaat tgttgaaaca aatgacggta gagaatgtta acactgccgt taaacaatat
    13201 ctttctcatc cggtaaatac ttataccgga gtattattgc caaaataata acagccccgt
    13261 caacacatcg ttggcgggga ttttagcaat attcgctatt tttatgtaat aattttataa
    13321 atgcgttcaa aataataatc aagtactaat agtgatattt taaggtctga tttttacgtg
    13381 ataattcagg agacacagaa tgcgcataaa aataacagca taaaacacct taccaccacc
    13441 caagaatttc atattgtatt gtttttcaat gaaaaaacat tattcgcgta atatctcacg
    13501 ataaataaca ttaggatttt gttatttaaa cacgagtcct ttgcacttgc ttactttatc
    13561 gataaatcct acttttttaa tgcgatccaa tcattttaag gagtttaaaa tggataagaa
    13621 gcaagtaacg gatttaaggt cggaactact cgattcacgt tttggtgcga agtctatttc
    13681 cactatcgca gaatcaaaac gttttccgct gcacgaaatg cgcgacgatg tcgcattcca
    13741 gattatcaat gacgaattat atcttgatgg caacgctcgt cagaacctgg ccactttctg
    13801 ccagacctgg gacgacgaaa atgtccacaa attgatggat ttatccatta acaaaaactg
    13861 gatcgacaaa gaagaatatc cgcaatccgc agccatcgac ctgcgttgcg taaatatggt
    13921 tgccgatctg tggcatgcgc ctgcgccgaa aaatggtcag gccgttggca ccaacaccat
    13981 tggttcttcc gaggcctgta tgctcggcgg gatggcgatg aaatggcgtt ggcgcaagcg
    14041 tatggaagct gcaggcaaac caacggataa accaaacctg gtgtgcggtc cggtacaaat
    14101 ctgctggcat aaattcgccc gctactggga tgtggagctg cgtgagatcc ctatgcgccc
    14161 cggtcagttg tttatggacc cgaaacgcat gattgaagc
//
LOCUS       DAJVUN010000105        14036 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.105, whole genome shotgun sequence.
ACCESSION   DAJVUN010000105 DAJVUN010000000
VERSION     DAJVUN010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14036
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.105"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            479..1303
                     /gene="gadX"
                     /locus_tag="OQQ76_002631"
     CDS             479..1303
                     /gene="gadX"
                     /locus_tag="OQQ76_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadX"
                     /protein_id="HCS1969080.1"
                     /translation="MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRV
                     DKCVENFVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQ
                     NKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWT
                     LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHSFSIKRVAVSCGY
                     HSVSYFIYVFRNYYGMTPTEYQERSAQGLPNRDSAASIVAQGNFYGTDRSAEGIRL"
     gene            1671..2399
                     /gene="gadW"
                     /locus_tag="OQQ76_002632"
     CDS             1671..2399
                     /gene="gadW"
                     /locus_tag="OQQ76_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadW"
                     /protein_id="HCS1969081.1"
                     /translation="MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFC
                     SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG
                     VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE
                     RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF
                     INTFRQYYGVTPHQFAQHSPGTFS"
     gene            complement(2762..5875)
                     /locus_tag="OQQ76_002633"
     CDS             complement(2762..5875)
                     /locus_tag="OQQ76_002633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HCS1969082.1"
                     /translation="MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTIT
                     VSATYPGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDI
                     AQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVAS
                     NIKDPLSRTAGVGSVQLFGSEYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQ
                     LGGMPQAADQQLNASIIVQTRLQTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYS
                     TVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIE
                     ISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLS
                     AVFMPMAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPN
                     ALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTSFLPEED
                     QGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGL
                     AFISLKPWSERVGEENSVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMEL
                     LDNGNLGHEKLTQARNELLSLAAQSPDQVTGVRPNGLEDTPMFKVNVNAAKAEAMGVA
                     LSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAP
                     LSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYS
                     WTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLAT
                     DLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIGAIIEAARMRLRP
                     ILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHL
                     FARFKKA"
     gene            complement(5900..7057)
                     /gene="mdtE"
                     /locus_tag="OQQ76_002634"
     CDS             complement(5900..7057)
                     /gene="mdtE"
                     /locus_tag="OQQ76_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtE"
                     /protein_id="HCS1969083.1"
                     /translation="MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPG
                     SVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELN
                     SAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV
                     EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQD
                     FLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIF
                     PNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIE
                     ASKAIGDEWVVTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ"
     gene            7117..7395
                     /locus_tag="OQQ76_002635"
     CDS             7117..7395
                     /locus_tag="OQQ76_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969084.1"
                     /translation="MRDLQTSGIVGLSASKVGYRHSDRHGEVNDKKNVAVLPTVPASI
                     RATKGSTGGYTYQGNKVVLASPLVITGGNEISICIPRHASHQFQLLMS"
     gene            complement(7396..7923)
                     /gene="gadE"
                     /locus_tag="OQQ76_002636"
     CDS             complement(7396..7923)
                     /gene="gadE"
                     /locus_tag="OQQ76_002636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadE"
                     /protein_id="HCS1969085.1"
                     /translation="MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVI
                     IDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEIT
                     YGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITLTLNISQQTLKIQKFNIMYKLKL
                     RRMSDIVTLGITSYF"
     gene            complement(8722..9294)
                     /gene="hdeD"
                     /locus_tag="OQQ76_002637"
     CDS             complement(8722..9294)
                     /gene="hdeD"
                     /locus_tag="OQQ76_002637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-resistance protein HdeD"
                     /protein_id="HCS1969086.1"
                     /translation="MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFV
                     SGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPEL
                     GIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVS
                     VTLVSTLVGIELIFSAASLFSFASLFVKQQ"
     gene            9549..9881
                     /gene="hdeA"
                     /locus_tag="OQQ76_002638"
     CDS             9549..9881
                     /gene="hdeA"
                     /locus_tag="OQQ76_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeA"
                     /protein_id="HCS1969087.1"
                     /translation="MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLA
                     VDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE
                     WDKIKKDM"
     gene            9997..10323
                     /gene="hdeB"
                     /locus_tag="OQQ76_002639"
     CDS             9997..10323
                     /gene="hdeB"
                     /locus_tag="OQQ76_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeB"
                     /protein_id="HCS1969088.1"
                     /translation="MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFID
                     LNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA
                     SNDLPN"
     gene            10387..11034
                     /locus_tag="OQQ76_002640"
     CDS             10387..11034
                     /locus_tag="OQQ76_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HCS1969089.1"
                     /translation="MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSAL
                     FMIVSKYGFADVLSLDHVGLDPSRIAAQVVTGVGFIGAGNILVRNQNIVGLTTAADIW
                     MTAAIGMVIGSGMYELGMYGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSML
                     DWFKQQKIKTDLVSLQENEDHEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS"
     gene            complement(11076..11606)
                     /locus_tag="OQQ76_002641"
     CDS             complement(11076..11606)
                     /locus_tag="OQQ76_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1969090.1"
                     /translation="MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDGMLHQNAFVI
                     IDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI
                     NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKITLKTFYCHKHNIMMILNL
                     KRINELVRHQHIDYLV"
     gene            complement(11762..12328)
                     /gene="slp"
                     /locus_tag="OQQ76_002642"
     CDS             complement(11762..12328)
                     /gene="slp"
                     /locus_tag="OQQ76_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein Slp"
                     /protein_id="HCS1969091.1"
                     /translation="MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQ
                     PGLYVGQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFL
                     DPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYG
                     YGAFWPEPGWGAPYYTNAVSQVTPELVK"
     gene            complement(12576..13799)
                     /locus_tag="OQQ76_002643"
     CDS             complement(12576..13799)
                     /locus_tag="OQQ76_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969092.1"
                     /translation="MSIDFTPGIINTYHGDIYNCTTNTDNVKTPDTPKWPCDNWEEQQ
                     PINSTFSGEGYNPEQFDLAQQQLQQINACHTNTTYTNADYSKVVVQLVSLINNIETIS
                     STPLTQQTQSILNQINNIRYEKNKSAECRIIVVANPKPDKAIITKISVEEGIPITFSV
                     QTMFSDTNFIAEQRADLPTNIKDIQSLYQKMTKLYIEHSENKNRMKVFAGTNFIDFNM
                     TGQNLSGFVLTLSRFYFEDLLNINFTDANLGDTIFYIKNTLPPKLYKDGQYLDKQIEG
                     LFSTLLTINDNFLRAKAEIASTIIKFLEARITNLSYNDILKYQQEFQKQCYKQVKAST
                     TLSRYNKIQTWAEMSEYQFEVFQFETLNPKKMSHTPYLKRPLPNEKDINYGVEIEIPS
                     GKRIRLSNHYQNIIP"
BASE COUNT         3896 a         3000 c         3104 g         4036 t
ORIGIN      
        1 ggactttgct gaactgttgc tggaagacta caaagcctcc ctgaaatatc tcagcgatca
       61 cccgaaactg cagggtattg cccagcagaa cagctttaaa cacacctgat aacataacgt
      121 tgtaaaaacc gaatgcccag cctttaaaaa aacagctggg cattcggttg cttattaatc
      181 gcaataatat attggctgtc tattcatcgt gttgataaga tatatgttat atgaatgttt
      241 attaaatgta gcgattgcct ttaatgtcac gaaaagggat tatttgcttg ctattaattt
      301 cactgcgttc ttaaacacgt ttttgtatta taaatccagt catcctgccc gtagaacatc
      361 acacattatc atcctgttct cctgcttcgt ttaaatttat ttatcaatca atttgactta
      421 agagggcggc gtgctacatt aattaacagt aatatgttta tgtaatatta agtcaactat
      481 gcaatcatta catgggaatt gtctaattgc gtacgcaaga cataaatata ttctcaccat
      541 ggttaatggt gaatatcgct attttaatgg tggtgacctg gtttttgcgg atgcaagcca
      601 aattcgagta gataagtgtg ttgaaaattt tgtattagta tcaagggata cgctttcatt
      661 atttctgccg atgctcaagg aggaggcatt aaatcttcat gcacataaaa aaatttcttc
      721 attactcgtt catcactgta gcagagatat tcctgttttt caggaagttg cgcaactatc
      781 gcagaataag aatcttcgct atgcagaaat gctacgtaaa agagcattaa tctttgcgtt
      841 gttatctgtt tttcttgagg atgagcactt tataccgctg cttttgaacg ttttgcaacc
      901 gaacatgcga acaagagttt gtacggttat caataataat atcgcccatg agtggacact
      961 agcccgaatc gccagcgagc tgttgatgag tccaagcctg ttaaagaaaa aattgcgcga
     1021 agaagagaca tcatattcac agttgcttac tgagtgtaga atgcaacgtg ctttgcaact
     1081 tattgttata catagctttt caattaagcg agtcgcagtg tcctgtggat atcacagcgt
     1141 gtcgtacttc atttacgtct ttcgaaatta ttatgggatg acgcccacag agtatcagga
     1201 gcgatcggcg cagggattgc cgaaccgtga ctcggcggca agtattgttg cgcaaggaaa
     1261 tttttacggc actgaccgtt ctgcggaagg aataagatta tagaatttta ctcagacata
     1321 aaaaaaaccc ggcatagggg accgggaaga ggatagtctg ccgtctccag actaataaac
     1381 cgttataaca ctccctgttg gcacgggaaa ctttgtgctc tcagtaagtt aaatataact
     1441 tttactggaa ataagatcag ccattttttt ataaacataa gctatacgct gtgcgaaaat
     1501 atattcgtgc tgcatttact tattatcaat taactgttat gcaaaactac tttgtggata
     1561 aattttggtc ctaccaaatc tggcagtttt tgcgctaaga aacagtctgg caacatttca
     1621 ttagtatact gaaattgaaa taatcgcagt atgaaatata agggataatc atgactcatg
     1681 tctgctcggt gatcctcatt cgtcgttcat tcgatattta tcatgaacag cataaaatat
     1741 cgctgcataa cgagagtatc gtgctgctgg agaaaaattt ggcagacgat tttgcgtttt
     1801 gttcaccgga tacgcgacga ctggatatcg atgagctgac agtttgccat tacttacaaa
     1861 atattcgtca gctaccacgc aatttagggt tacatagcaa agaccgtcta ttaattaacc
     1921 agtcaccccc catgccgctg gtgacggcga tttttgatag cttcaatgaa tccggggtaa
     1981 attcaccgat actgagcaat atgctctacc tttcctgttt atcgatgttt tctcataaga
     2041 aagaactgat ccccttactt ttcaatagca tcagcactgt ttcaggaaaa gttgaacgcc
     2101 ttattagctt tgatatcgcc aaacgttggt atctgcgcga tatcgcggaa agaatgtata
     2161 ccagcgagag tctcatcaaa aaaaagttgc aggatgaaaa tacctgtttc agtaaaatat
     2221 tactcgcttc caggatgtcg atggccagac gattactcga gttacgtcaa attcctctgc
     2281 atactattgc agaaaaatgt ggctatagca gtacgtcgta ctttataaac acatttcgac
     2341 aatattatgg tgtaacgcca catcagtttg cgcaacattc gccaggtacc ttttcctgac
     2401 atattttgca tttgaatatt ggtcaggatc tcacacctgc ttcatgtgaa actcttccct
     2461 gatgatttct gccgggctac cggctagttc tctttcgcag tttgccaggc ggtataggta
     2521 ttttcaggag gaaaagactc ggcatgtttg ggattattaa gctgacaatt catacgatta
     2581 cgggaatgtg ggtcagtatt gtgctgttca aattgatgac gaatggctgg agtggtttct
     2641 actttcagtg ctgtgtacta agcctggtat tcctgacggt tagctggttg ttgagtggtg
     2701 aatggttagc aggaaagagt aaggctgaac cttcacgttc aaccttactc tcatttacac
     2761 gttacgcttt tttaaagcgg gcaaagagat gttccactac aacgaaaaag accggaacga
     2821 agtaaattgc cagcactgtt gcggcaaaca tcccgcccat cacgccggta cctaccgcgt
     2881 tttgcgcgcc agaaccggca ccatgactga taaccagcgg cagcacgccg agaataaagg
     2941 ccagagaggt catcaggatt gggcgtaaac gcatccgcgc cgcttcgatg attgccccta
     3001 tcggcgtttt cccttctttc tgcatcatct caacggcaaa ttcgacaatc aggatggcgt
     3061 tcttggcgga aagcccgatg gtggtcagca aaccaacctg gaagtagacg tcattactta
     3121 agccgcgcag atcggtggcc agtaatgcgc caacgacgcc taacggaaca accaacatca
     3181 ccgagaacgg aattgaccag ctctcataga gtgcggcgag ggcgaggaac accacgacca
     3241 gtgaaatggc atacagtgca ggagcctggt ttgaggataa cgcttcctga tacgacagtc
     3301 cggtccatga gtagccgacg cctgccggaa gtttagcgac caggtctgcc ataaatttca
     3361 tagcgtcacc ggtacttttc ccggccgccg cttcacctaa aatctccatt gacgggatgc
     3421 cgttgtagcg ttccaatcgc ggtgaaccat aggtccattc ggtagacgag taggcagaaa
     3481 gcggtgccat cgtgccagag gcgttgcgta cataccattg gttgatgtta tccggcaaca
     3541 tacggaacgg cgtgcctgcc tggacataca cttttttcac ccgcccctgg ttgaggaagt
     3601 cgttcacgta gctgctgccg aaggcggtgg aaattgtctg gttgatatca gacagcgcca
     3661 cacccattgc ctcagctttc gcggcgttga cgttcacttt gaacatcggc gtatcttcca
     3721 ggccgttcgg gcgtaccccg gtgacctggt caggcgattg cgctgccagt gataacagct
     3781 cgtttcgtgc ctgggttagt ttttcgtgcc ccaggttacc gttgtccagc agttccatat
     3841 caaaacctga cgcggtaccc agttcagcca ccgcgggtaa gttgaacggg aagacgacgg
     3901 ctttattgat actgcttaac gcaatcattg cccgctgaat gatcgcggta accgagtttt
     3961 cctcaccgac acgttcagac cacggcttga gactgataaa cgccaggccg ttgttttgcc
     4021 cctggccgct gaagccaaag ccgccaacgg taaacaccga ctgaacatta tctttctctt
     4081 ttgtaagata ataatccgtc acctgttgca gcactttcgt ggtgttaacc atggtggcac
     4141 cggaaggtaa ttgcgcggtg gtcataaata ccccctgatc ctcttctggt aagaaagagg
     4201 tcggtgtacg caggaacagc accgccatcc cggcgcaaat cagcaggtag accaccatgt
     4261 agcgaccggt acaacgcaac agcgagcggg tgctatcggt atagtgctga gttgattttt
     4321 caaacagcgt gttgaagcgt gcgaacaggg cgttaggttt gtgaccgcct tccggcgcgg
     4381 ctttcagaat ggtggcgcac agggcagggg tcaggctcat tgccacaaat actgaaagca
     4441 gcatggagga gatcagcgtg atggagaact ggcggtagat ctccccggtt gcgccgctca
     4501 taaaggccat cggcataaac actgcggaaa gaacaacagc aataccgacc agcgcacgtt
     4561 ggatctgccc catcgattta tgcgtcgctt ccttcggtgg tagcttatct tccgcaatga
     4621 cacgctcgac gttctccacc accacgatgg cgtcatccac cagtaaccct atcgccagca
     4681 ccatcccgaa catagttaac gtgttgatgg tgaaaccgac cgccgacaag atcgcaaacg
     4741 tcccgagaat aaccaccggt acggcaatcg tcgggatgat tgtggcacgg aaattctgca
     4801 aaaacagata catgaccagg aagacgagga tgatagcctc aaccagtgtt ttaaaaactt
     4861 cctgaataga aatttcgata aacggcgtgg tgtcgtaagg ataaaccgtc ttcagacttg
     4921 cggggaaata ggctgataag cggttcagct cctctttgac tgcccgcgag gtatccaggg
     4981 cgtttgctcc ggtagccagt ttgatggcga tcccggcagc aggtttgccg ttatagcgcg
     5041 ccacggtgga ataatcttcc gctccaagtt cgacgcgggc gacatcacgc agcagcactt
     5101 gcgaaccatc ttgctgaact ttcaacagga ttttgccaaa ttcttccggc gtttgcagac
     5161 gcgtctgcac aatgatcgag gcgtttagtt gctggtctgc cgcctgtggc atgccaccca
     5221 gttgaccacc ggaaatctgg ttgttttgca ccttaatctg ggaaataaca tcggaaggta
     5281 ccagattgta tttattgagt ttttgcgggt ccagccagat acgcatggcg tactcggaac
     5341 caaagagctg tacgctacca acgcccgcgg tacggcttag cgggtctttg atattagacg
     5401 ctacatagtc cgcgatatcg tactggttga ggctgccgtt atcagaaata aacgccgcta
     5461 ccatcagaat attactgctc gacttatcaa cgctaatccc ctgctgctgc accgcttcag
     5521 gtaatgaagg catagcgagt tgcagtttat tttgcacctg aacctgtgcg atatcaggag
     5581 atgtcccagt ctcgaaggtc agagtgatag aggcattacc cgccgcatca ctggttgaag
     5641 acatgtacat caggccatca agcccattca tattttgctc aatcacctga gtgaccgagt
     5701 cttctaccgt ttgcgcatcg gcacctggat aggtagcgct gacggtaatg gtcggtggcg
     5761 caatctgcgg atactgcgca accggtaagt tcatgatcgc cagaccacct gcaagcatca
     5821 taataatggc aagtacccag gcaaaaaccg ggcgatcaat aaaatagtta gccatgaaag
     5881 tccccttaag cctgcaacgt tattgtttcg attcggtgct ggcgttttcc tggctggagg
     5941 aaattgctcg tgctttgata cccggacgaa tgcgttgcaa accggaaacg atcacccgat
     6001 cgccagcctg caagccagag gtgacaaccc actcgtcgcc gatggctttg ctggcttcaa
     6061 tttcgcgtag ctgcacaaca tcgtctttat ccagaatgag cgccgttgct ttaccctggg
     6121 cgttgtgggt gacgccttcc tgcggcacca gtaatacatt ctggcggcta ccttcatcca
     6181 ctaatgccgt gacgtacatg ccaggcagca agtcaccatt tgggttgggg aaaatcgccc
     6241 gtaacgtcac ggagcccgtg gtttcatcca ccgtcgggtc ggagaatttc agtgtgccgg
     6301 tctggctgta gcgtttacca ttttccagat tgagctgtac tggcgtactg ccctgaacct
     6361 gtttgatttg cccactggcg acctcttctt tcatgcgcaa gaaatcctgc accgactgcg
     6421 tgagatcgac ataaatcggg tccagacgtt gtacggtaac cagcgaatct gcctgattag
     6481 cggtaacgag tgcgccgacg gtcaccgacg atttcccgct gacgcccgta atcggcgagg
     6541 tgacattcgc gtattgcaga ttgatcgtcg cctgttcaac agccgctttg gcgacggtga
     6601 cattggcttc tgcttcattc agctgggtgc gcgcggtgtc gtaatcctga cggctaacgt
     6661 agttggtctt cagcaacgat gcctggcggt taaaggtgat gcgggcattg ctggcggtag
     6721 agagcgcttt cgccagcgag cctttggcgg agtttagctc ggcctgtaaa ggtgcaggat
     6781 caatctgata cagcgaatcg ccctggttca ctttatcgcc ttcgataaag ttgcgtttaa
     6841 tgataatacc gcccacctgg ggacgtatct cggcaacttc ataaggaacg gttctaccgg
     6901 gcaattcgct caacacattg accgaaccgg gggagagtgt gacgacaccg acctcaggcg
     6961 tcatggcggc ggcgttttcc gccgatttgt catcgcaggc ggtgagcatc gcgccgcaga
     7021 ataacaacgg tattaacagc tttcttcttc tgttcatttt agtccctgaa aattcttgag
     7081 aaataacggt tctttaaatt gcgcgcgagg agagatatga gggatttaca gaccagcggc
     7141 atagtggggt tgtcagccag taaggtggga tacaggcaca gtgatcgaca tggtgaggtc
     7201 aacgacaaaa aaaatgttgc cgttctgcca acagttcctg ccagcattcg ggcaacgaag
     7261 ggttctactg gtggatacac ataccagggg aataaagtcg ttttagcctc tcctttagta
     7321 atcaccgggg gtaatgaaat cagcatctgc atccctcgtc atgccagcca tcaatttcag
     7381 ttgcttatgt cctgactaaa aataagatgt gatacccagg gtgacgatgt cgctcatacg
     7441 tcttagtttc aacttgtaca taatgttgaa tttctgaatc tttaatgttt gttgcgaaat
     7501 attgagcgtc aacgtgatat tgctttcatt tttatttttc agaatcagtt gcataatttt
     7561 gaactgatta tgtgaaaaac ataattgtga attcttatgg ggcaagtgtt taccataagt
     7621 aatctcaaga agatttttga tactttcttt gcggctaaca aaataaatag gcgctttagc
     7681 ttttagttta ctgatgtgat aaggtgccaa aacaataatt ctctcggcat ctaatttctc
     7741 cagaaattta atcgcttctt catcaaggat atgattgtga taggtatcaa tgataacctt
     7801 gaagggttta ttgcctactt ttttgatctc tgacagggaa ttgattttta tcatttcgtg
     7861 attatctttc aactgccaaa agccctgtaa aagaaaagaa tctttcgtca tgagaaaaat
     7921 cataacttgc tccttagccg ttatcgtttc gaacatgtca tccttttcat tatttacatc
     7981 cttgtccgaa tcgttgttca atatagtaaa cgcctataag aactttaccc ttcgtgaact
     8041 aatacgtcta ttaacactaa tcaatacttc agatttatcc atcatgcact ccatatattg
     8101 atcctaagta agattcctgg ttgttatcag cttgtaaata gtaaacaaaa agttaacgtt
     8161 tgcggattac tgcccaagaa taagttatca ataaccagtt tgtgatctct gaagaatatt
     8221 actaaagtta aaatgtaatc cgatttaaat atcgagtctc cttgtttcga cttaagctgg
     8281 caattggatt gccagctttc ttttaacgca ttgaaattac ctgagtaaat aacgcattca
     8341 tgtcttcagg tttttatata gcgtctggag acacggatat ttatgcaatg taatcaacgc
     8401 cagttgcaaa aaaatgaacc cggattactt atttaaccgc ccatagcatc aacgcttacg
     8461 gaactctttg ttcactttcc cacagcactt ttaaaacatt aaacctgact acggaaaata
     8521 tcagccatga taatgtttga aatggctaat ttgccatgga gtgaaaaaaa ttagatgaaa
     8581 ttcagtaggt tgaaataatc actagcaggt aattatttca atgatagtgc gcaattgatc
     8641 tacaacactg cgtagcggag agagtattaa tcggatcata gtcacatcaa gtgactatga
     8701 tccgggtgac aaccggggta attattgctg cttaacgaac aaactggcga agctgaacag
     8761 gctggcggcg ctaaatatca gttcaattcc caccagtgtg gaaaccagcg ttacagacac
     8821 catcggcgtt gcaccaagga atatccaggc aatgacgata tccagcacac caataacgag
     8881 ctgtagccag ctgcctttca ttgaacgctg acgataccaa ctcatcaggc gaataacccc
     8941 tgcaacacag aacaaaccgg caataaatgc cgcaatggca aaaatgccca gctccggtgc
     9001 gcggatgaag aaatagccga tcaataaata ggcgactgcg acgaggaaac cggataatac
     9061 cggccagaaa ttatgactgc ggttgctgaa taacccgaca ataagcgcaa tacccgagca
     9121 gattaataat gcacccacta ctgtgcttaa aatatcgcca gagacgaacg ggaaactgat
     9181 acacagcaac ccgacgataa acagcagcac ggcaataaac tggattgctc tgcgatgttt
     9241 tttaagcatc tccagatcaa acttcaaaat tgttgcctta tctatatata acatagaacc
     9301 accctataaa attaagaaga aaatcccctg ctatcaatct atgccaaaaa cgcgtctaag
     9361 aatgcagtcg atttaataaa aatttcctaa ttgcagtatc tgatgcatct gtaactcatt
     9421 gtattgaaat aaaaatatct gattttgata ttttccatca acatgacata tacagaaaac
     9481 caggttataa cctcagtgtc gaaattgatt cgtgacggct ctttcacttt atagttgagg
     9541 atattacgat gaaaaaagta ttaggcgtta ttcttggtgg tctgcttctt ctgccagttg
     9601 tgagcaatgc agcggatgcg caaaaagcag ctgataacaa aaaaccggtc aactcctgga
     9661 cctgtgaaga tttcctggct gtggacgaat ccttccagcc aactgcagtt ggttttgctg
     9721 aagcgctgaa caacaaagat aaaccagaag atgcggtttt agatgttcag ggtattgcaa
     9781 ccgtaacccc agctatcgtt caggcttgta ctcaggataa acaagccaac tttaaagata
     9841 aagttaaagg cgaatgggac aaaattaaga aagatatgta attccgggaa tgcgttacat
     9901 cgtacttcct tgcatattga acaggccgga atatcttctt taaaagcagc tattcctcct
     9961 gttcatatat aatctatata ttgaatgggt tacaaaatga atatttcatc tctccgtaaa
    10021 gcgtttattt ttatgggcgc tgtagcggct ttgtcactgg tgaacgcaca atctgcgctg
    10081 gcagccaatg aatccgctaa agatatgacc tgccaggaat ttattgatct gaatccaaaa
    10141 gcaatgaccc cggttgcatg gtggatgctg catgaagaaa cagtatataa aggtggcgat
    10201 accgttactt taaatgaaac cgatctcact caaattccta aagtgatcga atactgtaag
    10261 aaaaacccgc agaaaaattt gtataccttc aaaaatcaag catctaatga cttgccgaat
    10321 taatgaggta caagtaaaaa ggagtagcaa gttgagccat cttgctgctc ctttttgcat
    10381 ttttatatga cagcagaatt tattatacgt cttatactcg cggcaattgc ctgtggcgct
    10441 attggcatgg aaaggcaaat gcgaggcaaa ggagcagggt tacgcacaca tgtattaatt
    10501 ggcatgggaa gcgccctgtt tatgattgtt tcgaaatatg gttttgctga cgtgctgtct
    10561 ttagatcacg tcggactcga ccccagccgt attgctgctc aggtggtgac gggcgtcggg
    10621 tttatcggtg caggtaacat tctcgttcgt aaccaaaata ttgtaggttt gacgacggca
    10681 gcggatatct ggatgaccgc cgctataggt atggttattg gcagtggtat gtacgaattg
    10741 ggtatgtatg gttcagtgat gaccttgctg gtgctggaag tcttccatca attaaccttc
    10801 cgcctgatga acaaaaatta ccatttacag ctgacattag tgaacggtaa tacggtatca
    10861 atgctcgact ggtttaagca gcaaaaaata aaaacggatt tagtttcgtt gcaggaaaat
    10921 gaagatcatg aagtggtcgc cattgatatc cagcttcatg ccacaacgtc gatagaagat
    10981 ctgttgcgat tattaaaagg tatggcaggg gtgaaaggcg tttcaattag ctaatctgtg
    11041 tggcagcgta gtcagactca ccgtaagcct gaaattcaca ccagataatc aatatgctga
    11101 tggcgtacca gctcattgat ccgcttaaga ttgaggatca tcatgatatt gtgtttatgg
    11161 cagtagaacg tttttagcgt tattttcagt ttctccagaa tatcctccgt tgtcatttga
    11221 ttcgcaatgc agctcagaac ctgatgttgc ttgcgcgaaa gtgacacagc cgcttcaggc
    11281 acagagcagt aactgccatt gatgagtgcg acaaaatcga tgatagtgat agtccgcgga
    11341 acaaaggtca ccggcacttt ccccaggcag cgtttaatat taaaggggga gaaaataatc
    11401 acatggacag gttttaatcg ttcaatttga gtgagaaaat tagaatgaaa tacattattc
    11461 attaatgtat caataatgac aaaggcattc tgatgcaaca ttccgtcgat ctcttcttcg
    11521 ttctgtatat gaacgacatt acctttgctc aaaatgtttt tcatcgcggt gaagaacatc
    11581 gtatccctgg taattataag aaacataacc gactcctggt gcggacatta attttataat
    11641 cagtttgcca aaggtaatta acaggacagg gcttataata ataatagtta gcttgctgtg
    11701 tattaatttt atgtaatgca cgatgcagat gctgagaaag catctgcatc tttcggtggt
    11761 gttatttgac cagctcaggt gttacctgac tcaccgcatt ggtgtagtaa ggcgcacccc
    11821 agcccggttc cggccagaat gcaccatagc cgtaatccca taggttatag gtggtattaa
    11881 ccacttctct caaatgccac acctggatgc cctgcatatt cacttccagg aagttatacg
    11941 ggactttatt gataaagcca ggttgttcac cctgaatggt accgaggatg gtaacaaagt
    12001 gattacgata gttcactggg tcaaggaagc cgctttgtct ggcgagcagt cggccctgat
    12061 agttggcttc aatatcaggt ttcgcatagc tatccaacgg taatacagcg atttctaaca
    12121 acgtatccgt tttgccattg ataacgttga taaccttccc accaaagcgc gcttgttgac
    12181 caacatataa ccccggctgg ttatgaacag caacaaaact tttttgaata tcaggttggt
    12241 tattgccttt gatattttgc ggaattgaac tacatgcggc aagcaaaaat gaaaggctga
    12301 ggatgagtgc accttttgtc atgttcatgt tactatcctt atcaacaaat attaaaacca
    12361 taatagatat ttctttatag ttttcatctg attctgaggt gatatgcctg atagtaacgt
    12421 aaacctgtct gatgtttata tcccttttgt ttagttcaat tccattgatt ttggggcgtg
    12481 gcataagtat ccatcgcccc ataatataat cctttgtttt aaaattacat aaaatctatt
    12541 tttattcaat aattataaag tgctaataat caatattatg gtattatatt ctgataatga
    12601 tttgataagc gaattctttt gccagatggt atttctattt ccaccccata atttatatct
    12661 ttttcattag gaagtggcct ctttaaataa ggcgtgtgtg acattttttt tgggttaagc
    12721 gtctcgaatt gaaatacttc gaactgatat tcagacattt ctgcccatgt ttgaatttta
    12781 ttgtatcgag agagtgtcgt agaggcttta acttgcttat aacattgttt ttggaattct
    12841 tgctgatatt ttaatatgtc attgtatgaa agattggtta tcctggcctc taaaaattta
    12901 attattgtcg aagcaatttc cgcttttgct cgtaaaaagt tgtcattaat agttaataat
    12961 gttgaaaata aaccttcgat ttgtttgtca agatattgtc catctttata taatttgggg
    13021 ggtagggtgt tctttatgta aaaaatagtg tcacctaaat ttgcgtcagt gaaatttata
    13081 ttaagtagat cttcgaaata aaaccttgac aaggttagaa cgaacccgga aaggttctgt
    13141 cctgtcatat tgaaatcaat aaagttggtt ccggcaaaga ctttcatcct gtttttattt
    13201 tcactgtgct caatatataa cttcgtcatt ttttgataca ggctttgaat atcttttata
    13261 ttagttggta agtcagctcg ttgttcagca ataaaattag tatctgaaaa catggtttgg
    13321 acactgaatg ttatgggtat tccctcttct acgctaattt tagttatgat tgccttgtcg
    13381 ggtttaggat tagcgacaac aatgattcga cattcagcac ttttgttttt ttcatatcta
    13441 atgttattaa tctgattaag tattgattgt gtctgttgcg taagtggtgt cgaacttatc
    13501 gtttcaatgt tattaataag acttacaagt tgaaccacaa cttttgagta gtctgcattt
    13561 gtatatgtgg tgttcgtgtg gcatgcatta atttgttgga gttgttgttg cgctaaatca
    13621 aattgttcag ggttgtatcc ttctccagag aatgtggaat taatgggttg ttgttcttcc
    13681 caattatcac aaggccactt cggtgtgtct ggcgttttaa cattatcggt atttgttgtg
    13741 cagttataaa tatcgccgtg atatgtattt attatacctg gggtaaagtc aattgacata
    13801 acattcctta ttcatcatct gttttatgct aaggttttta aattggataa ttagaacagg
    13861 aatggatttt cttctacaca caataaatat aatgcgttat atcttcctga tataattacc
    13921 tttaaattcc ctttcatttc cacccggtaa tatttgtgta taaaaaaagc agtgatagta
    13981 tcgtaaagga aaacgttaac aactatcaaa aagcgctcat tttaaaaagt tattat
//
LOCUS       DAJVUN010000106        13982 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.106, whole genome shotgun sequence.
ACCESSION   DAJVUN010000106 DAJVUN010000000
VERSION     DAJVUN010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13982
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.106"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..470)
                     /locus_tag="OQQ76_002644"
     CDS             complement(<1..470)
                     /locus_tag="OQQ76_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase growth adaptation protein"
                     /protein_id="HCS1969093.1"
                     /translation="MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYR
                     FWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPES
                     NVIHAGYGSYAVIEVDLDGGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKG"
     gene            complement(683..4906)
                     /gene="rpoC"
                     /locus_tag="OQQ76_002645"
     CDS             complement(683..4906)
                     /gene="rpoC"
                     /locus_tag="OQQ76_002645"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HCS1969094.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK
                     TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDI
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA
                     PAAPQVTAEDASASLAELLNAGLGGSDNE"
     gene            complement(4983..9011)
                     /gene="rpoB"
                     /locus_tag="OQQ76_002646"
     CDS             complement(4983..9011)
                     /gene="rpoB"
                     /locus_tag="OQQ76_002646"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004870488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HCS1969095.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            complement(9331..9696)
                     /gene="rplL"
                     /locus_tag="OQQ76_002647"
     CDS             complement(9331..9696)
                     /gene="rplL"
                     /locus_tag="OQQ76_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HCS1969096.1"
                     /translation="MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKALEEAGAEVEVK"
     gene            complement(9763..10260)
                     /gene="rplJ"
                     /locus_tag="OQQ76_002648"
     CDS             complement(9763..10260)
                     /gene="rplJ"
                     /locus_tag="OQQ76_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HCS1969097.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            complement(10673..11377)
                     /gene="rplA"
                     /locus_tag="OQQ76_002649"
     CDS             complement(10673..11377)
                     /gene="rplA"
                     /locus_tag="OQQ76_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HCS1969098.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASVN"
     gene            complement(11381..11809)
                     /gene="rplK"
                     /locus_tag="OQQ76_002650"
     CDS             complement(11381..11809)
                     /gene="rplK"
                     /locus_tag="OQQ76_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HCS1969099.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            complement(11969..12514)
                     /gene="nusG"
                     /locus_tag="OQQ76_002651"
     CDS             complement(11969..12514)
                     /gene="nusG"
                     /locus_tag="OQQ76_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HCS1969100.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            complement(12516..12899)
                     /gene="secE"
                     /locus_tag="OQQ76_002652"
     CDS             complement(12516..12899)
                     /gene="secE"
                     /locus_tag="OQQ76_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HCS1969101.1"
                     /translation="MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
     gene            complement(13129..>13982)
                     /gene="tuf"
                     /locus_tag="OQQ76_002653"
     CDS             complement(13129..>13982)
                     /gene="tuf"
                     /locus_tag="OQQ76_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1969102.1"
                     /translation="PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVR
                     ELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLL
                     PIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRA
                     GENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP
                     QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAG
                     VVAKVLS"
BASE COUNT         3256 a         3796 c         3428 g         3502 t
ORIGIN      
        1 ttacctttct gtttttcaga aatgggataa gcgctagtta catgcaaacg gagttttttc
       61 ttttccctga aagccctgaa cgcaacaaag taaaatgcct tatctcctcc gtctaagtcc
      121 acctcaatca cggcatagct accatacccg gcatgaataa cgttgctttc tggcagcgcc
      181 aaaatagttc tttttaagtg tgtgcgcgct aagttataac ggtgctggca gaagggacga
      241 gattctttag gcgcgtggta cattaacgat tgtttttctt cgttcgtctg atgttcataa
      301 tcttttgtga agcagtgaag agagtaggta acccaaaagc gatactctaa aggctctttg
      361 ccctcatgat gctgaacgta gacagcctga tgagcatcaa gaaatgataa atcacgaata
      421 tcaccatccg gatgtccaaa aggtcgccac ttttccactt cctgtttcat tctcgttcct
      481 taagaaagtt acacaggaat agtatcgaat ccttgccgag tttgactcaa ttagttcagt
      541 cagtttcagg atattagtca tctctacatt gattatgagt attcagaaat tccttaaata
      601 ttctgacaaa tgctctttcc ctaaactccc cccataaaaa aacccgccga agcgggtttt
      661 tacgttattt gcggattaac gattactcgt tatcagaacc gcccagacct gcgttcagca
      721 gttctgccag gctggcagat gcgtcttctg cagtcacctg cggtgcagcc ggagcttcac
      781 ccgcagcacg gcgacgcata cgatcctggt ggtacgcgta accggtacct gccgggatca
      841 gacgacccac gataacgttc tctttcaggc cgcgcagttc gtcgcgtttg cccgcaacgg
      901 ctgcttcggt cagcacgcga gtggtctcct ggaacgatgc cgcggagatg aaggactcgg
      961 ttgccagaga cgctttggtg atacccagca gatcgcggga gtaagttgca cccactttgc
     1021 cgttcgcttc cagttcgcgg tttgcgatct tgacgcgaga gtattcaacc tgttcgcctt
     1081 ccaggaagtc ggagctgccc gcgttaacga tggtagcttt acgcagcatc tgacgaacga
     1141 taacttcgat gtgtttatcg ttaatcttaa cgccctgcag acggtatacg tcctgtactt
     1201 cgttaacgat gtaacgagta acagcatgaa caccacgcag acgcagaatg tcgtgcggcg
     1261 cttccggacc gtcggaaatt acgtcaccac gttctacacg ttcaccttcg aacacgttga
     1321 gctgacgcca tttcggaatc atctcttcgt acggatcgct accgtctacc ggggtgataa
     1381 caagacgacg tttacctttg gtttctttac cgaaggaaac gataccgctg atttcagcca
     1441 ggattgccgg ctctttcgga cgacgtgctt cgaacaggtc cgcaacgcgc ggcagaccac
     1501 cggtgatgtc cttggtaccg ccggattcct gcggaatacg cgccagggtg tcaccagagc
     1561 tgatctgtac gccatcttcc agctgaacaa tcgctttacc cggcaggaag tactgcgcag
     1621 gcatatcggt acccggaatc agaatgtcgt taccctgagc atcaacgatt ttcagtgccg
     1681 gacgcagatc tttaccacct gcggtacgtt ctgcggaatc cagaaccacc agcgaagaca
     1741 gaccggtcaa ttcgtctgtc tgacgagtaa tggtctgacc gtcgatcatg tcagtaaagc
     1801 gtacaaaacc gcttacttcg gtgataaccg gcatggtgtg cgggtcccag tttgcaacgg
     1861 tttcgccgcc agcaacctgt tcgccatcgc ctttcgccag taccgcaccg taaggtactt
     1921 tgtagctttc tttggtacga ccgaattcgt cgatcagttt cagttcagta ttacgggaag
     1981 tgataaccag tttaccgctg gagttcacaa ccgacttcac gttgctgagc ttgatgctac
     2041 ctttgttttt cacctggatg ctggattcag cagccgcacg agatgccgca ccaccgatgt
     2101 ggaacgtacg catggtcagc tgtgtacccg gttcaccgat ggactgtgcc gcgataacac
     2161 cgattgcttc acccttgttg atgatgtggc cacgcgccag gtcacgaccg tagcagtgcg
     2221 cacatacacc aaagtcggtg tcacaagata caacagaacg tactttaacc gcgtcgacag
     2281 agttctcttc cagcaggtca caccactgtt cgtgcagcag cgtgttgcgc ggaacgagga
     2341 tatcagcagt acccggcttc agaacgtctt cagcagttac acgacccagt acgcgatcgc
     2401 gcagcggctc tttaacatca ccaccttcga taaccggagt catcatgata ccttcatggg
     2461 taccacaatc gtcttcggta accaccaggt cctgcgccac gtcaaccaga cgacgagtca
     2521 ggtaaccgga gtttgcagtt ttcagtgcgg tatccgccag acctttacga gcaccgtggg
     2581 tggagatgaa gtactggagt acgttcagac cttcacggaa gttcgcggtg attggcgttt
     2641 cgatgatgga gccatccggc ttcgccatca gaccacgcat accagcaagc tgacgaatct
     2701 gtgccgcaga accacgcgca ccggagtcgg ccatcatgta gatgctgttg aaggaaacct
     2761 gcttctcttc ctgaccgtca cggttaatca cggtttcagt ttgcaggtta tccatcatcg
     2821 ctttggatac acgatcgttc gccgcagccc agatatcgat aactttgttg tagcgttcgc
     2881 ccgcagttac cagaccagac tggaactgct cctgaatttc agcaacttct gcttctgcct
     2941 cggagatgat ttcgtgtttc ttctccggga tgaccatgtc atcgatgcca acagatgcac
     3001 cagaacgcgc tgcataggcg aagccggtgt acatgatctg gtccgcaaaa ataacggtcg
     3061 gtttcagacc gagaatgcgg tagcaggtgt tcagcatttt ggagattgct tttttaccca
     3121 gcgcctggtt gacgatggag taaggcagac ctttcggtac aatcatccac agaatggcac
     3181 ggccaacagt cgtgtctttc aggctggttt tcgctactaa ttcaccgttt gcatcttttt
     3241 catactcggt gatacgcact ttaacgcgcg catgcagaga agccagacca gagcgataca
     3301 gacgttctgc ttctttcggg ccagtcagca ccatgccttc gcctttggcg ttaacacagt
     3361 cacgggtcat atagtacaga cccagaacaa cgtcctgaga cggaacgatg attggttcgc
     3421 cgttcgccgg ggacaggatg ttgttggtag acatcatcag cgcacgcgct tccagctggg
     3481 cttccagcgt cagcggtacg tgaacagcca tctggtcacc atcgaagtcg gcgttatatg
     3541 ccgcacaaac cagcgggtgc agctggatag ctttaccttc gatcagtacc ggttcaaatg
     3601 cctggatacc cagacggtgc agagtcggtg cacggttcag cagtaccggg tgttcgcgga
     3661 taacttcgtc caggatatcc caaacgacag cttcttcgcg ctcaaccatt ttcttcgcag
     3721 ctttaatggt ggtagcaaga ccacgcagtt ccagcttgcc gtagatgaac ggtttgaaca
     3781 gctccagcgc cattttcttc ggcagaccgc actgatgcag acgcaggtat ggacctacgg
     3841 tgattacaga acgaccggag tagtcaacac gcttaccgag caggttctga cggaaacgac
     3901 cctgtttacc tttgatcatg tcggccaaag atttcagagg acgcttgtta gaaccggtga
     3961 tcgcacgacc gcgacgaccg ttatccagca gggcgtctac cgcttcctgc agcatacgtt
     4021 tttcgttacg tacgatgatg tccggcgcag ccagatccag cagacgtttc agacggttgt
     4081 tacggttaat gacgcgacga tacagatcgt tcaggtcaga agtcgcgaaa cgaccaccat
     4141 ccagcggaac cagcggacgc agatctggcg gcagtaccgg cagaacggtc aggatcatcc
     4201 actctggttt gttaccagac tgaacgaacg cttccagcag tttgatacgc ttggtcagct
     4261 ttttacgctt ggtttcggag ttggtttcgt tcagctcttc acgcagctgt tcgcactctt
     4321 gctccagatc catgctcttc agcagagcct ggattgcttc cgcacccatc ttcgcgtcga
     4381 attcgtcacc gaactcttcc agcgcgtcca gatactgctc ttcagtcagg atctgctgac
     4441 gttccaggtt ggtcataccg ccttcgataa ccacatagga ttcaaagtac agtacgcgtt
     4501 cgatatcgcg cagcggcata tcgagcagca gaccgatacg ggacggcagc gatttcagga
     4561 accagatatg cgcagtcggg gaagccagtt cgatgtggcc catacgctca cggcgtactt
     4621 tagtctgggt cacttcaacg ccgcacttct cacagatgac gccacggtgt ttcaggcgct
     4681 tgtacttacc gcacaggcac tcgtaatctt ttaccggccc aaagatacgg gcgcagaaaa
     4741 ggccgtcacg ttctggtttg aacgtacggt agttgatggt ttccggcttt ttaacttcac
     4801 cgaaagacca tgaacggatc atgtctggcg aagccagagc aattttgatc gcatcaaact
     4861 cttcggtttt agtctgcgct ttcagaaact ttaataaatc tttcacggat ttgctcccgt
     4921 cggagttagc acaatccgct gccgggtttt aacccgacag cagtgacctg tttgagcgag
     4981 aattactcgt cttccagttc gatgttgata cccagcgaac gaatctcttt caacaatacg
     5041 ttgaaggatt ctggcatgcc cggctccatc tgatggttgc cgtccacgat gtttttatac
     5101 atcttggtac gaccgttcac gtcatcagac ttaacggtga gcatttcctg cagggtgtat
     5161 gctgcgccgt atgcttccag cgcccacact tccatctccc cgaaacgctg accaccgaac
     5221 tgtgccttac cacccagcgg ctgctgagta accaggctgt aagaaccggt ggaacgcgcg
     5281 tgcatcttgt cgtcgaccag gtggttcagt ttcagcatgt acatgtaacc aacggttacc
     5341 ggacgctcga actgttcacc agtgcgacca tcgtacaggc ggatctgacc ggaagtcggc
     5401 aggtcgccaa gtttcagcag ctctttaatt tctgcttctt tcgcaccgtc gaacaccggc
     5461 gttgcgattg gcataccttt gcgcaggttt tcagccagac gcataacttc ttcatcgctg
     5521 aaggtactca ggtcaacttt ctgacgaacg tcagcgccca gatcgtacgc acgctggatg
     5581 aattcgcgca gtttcgcgac ttcttgctgc tgtttcagca tggcgttgat cttgtcgccg
     5641 atacctttcg cagccatacc caggtgggtt tcgaggatct gaccgatgtt catacgagac
     5701 ggtacgccca gcgggttcag tacgatgtct accggcgtac cgttttcatc gtaaggcata
     5761 tcttcgatcg ggttgatctt agaaattaca cccttgttac cgtgacgacc tgccatcttg
     5821 tcaccaggct ggatacggcg tttaaccgcc agatatacct taacaatctt cagtacgccc
     5881 ggtgccagat cgtcgccctg ggtgattttg cggcgtttcg cttcgagttt cttctcgaac
     5941 tcgtgtttca gttcgtcata ctgctcagcc agctgttcca gctgattttg tttctcttcg
     6001 tctgtcaggc ccagctccag ccagcgatcg cgcggcagtt tgtcgagctt ctcagcttca
     6061 acgccaccgg ctaccagcac agcacggata cggctgaaca gacccgcttc gaggatctgc
     6121 agttcttcag acaggtcttt cttcgcctgt ttgagctgca tttcttcgat ttccagcgca
     6181 cgtttgtctt tttctacgcc atcgcgagta aagacctgaa cgtcgataac cgtaccggat
     6241 acaccgtttg gtacgcgcag agaagagtct ttaacgtcag aggctttctc accgaagatc
     6301 gcacgcagca gtttttcttc tggggtcagc tgagtttcac ctttcggcgt taccttacca
     6361 accagaatgt cgccaccggt cacttccgca ccaatgtaaa cgataccgga ttcatctagt
     6421 ttggagagcg cagcttcacc cacgttcggg atgtcagcgg tgatctcttc cggccccagc
     6481 ttggtgtcac gggacacaca cgccagttcc tgaatgtgga tggtggtgaa acggtcttcc
     6541 tgaacaacac gctcggatac gaggatggag tcttcgaagt tgtaaccatt ccacggcatg
     6601 aacgctacgc gcatgttctg accaagcgcc agttcaccga ggtcggtgga cggaccgtct
     6661 gccagcacgt cgccacgttc aaccggttca cccagagaca cacacggcat ctggttgata
     6721 caggtgttct ggttagaacg ggtgtatttg gtcaggttgt agatgtcgat acctgcttca
     6781 cccggataca tctcgtcttc gttaactttg ataacgatac gggaagcatc cacgtactga
     6841 acgacaccac cacgtttagc taccgcagtt acaccggagt caacggcaac agcacgttcc
     6901 ataccagtac caaccagcgg cttatcagcg cgcagagtcg gaacggcctg acgttgcatg
     6961 ttcgcaccca tcaatgcacg gttggcgtca tcgtgttcca ggaacgggat cagggacgca
     7021 ccgacggata ccacctgctg ggtggatacg tccatgtagt caacctggtc gcggctgaac
     7081 aagctggatt cgcctttgct acggcaagtt accagatctt ctacgaagtg gccttcttca
     7141 tccaggttgg agttcgcctg ggcgataacg tagttgcctt cttcgatagc agacaggtag
     7201 tgaatttcgt cagttacaac accgtcggtc actttacgat acggagtctc aaggaagccg
     7261 tattcgttag tctgtgcgta cacggacaga gagttgatca gaccgatgtt cggaccttca
     7321 ggggtttcga ttggacatac gcgaccgtag tgagtcgggt gtacgtctcg aacttcgaag
     7381 cctgcacgtt cacgggtcag accgcctggg ccgagtgcgg agatacgacg tttgtgcgta
     7441 atctcagaca gcgggttgtt ctggtccata aactgagaca gctggctgga accgaagaac
     7501 tctttcactg ctgcggaaat cggcttggcg ttgatcatat cctgaggcat cagggtatcc
     7561 agatcgccca gagacagacg ctctttcacc gcacgctcta cacgtaccag gccaacgcgg
     7621 aactggtttt ccgccatttc gccaacggaa cggatacgac ggttgccgag gtggtcgata
     7681 tcatcgactt cgcctttacc gttacggata tcgatgagct ttttcataac atcaatgatg
     7741 tcgtctttgc tcaggatacc ggaaccttcg atttcttcgc gcagcagaga acggttgaac
     7801 ttcatacgac caaccgcaga caagtcataa cggtcttcgg agaagaacag gttctcgaac
     7861 aggctttcag ctgcttcacg agtcggcggc tcgccagggc gcatcatgcg gtagatttct
     7921 accagtgcgc tcagacggtc gttagttggg tcgacacgta aggtttcaga gatatatggg
     7981 ccgtgatcca gatcgttggt gaacagcgtt tcgatacgct tgtgaccaga ctggctcagc
     8041 ttagccagca gatccaggct cagctccatg ttcgctgcgc agatcagctc gccggtagac
     8101 tcatcaatat agtctttagc aaccacttta cctgcgatgt actcaaccgg gacttcgata
     8161 agtttgacgt cgtctttttc cagctggcga atgtggcgcg cagtgatacg gcggcctttt
     8221 tctacgtaca ctttaccgtt agcttcgatg tcaaaagatg cggtttcacc acgcaggcgt
     8281 tccggcacca gttccatctg cagcttgtta tcacggattt caaagataac tttttcaaag
     8341 aacaggtcga ggatctgctc tgtggtgtag ttcagggcgc gcagaatgat ggtcgcaggc
     8401 agtttacggc gacggtcgat acgtacgaac aggttgtcct tcggatcgaa ttcgaagtcc
     8461 agccaggaac cacggtaagg gatgatgcgc gcgttataca gcactttacc cgaagagtgg
     8521 gttttacctt tgtcggagtc aaagaagacg cccggactac ggtgcagctg ggaaacgata
     8581 acacgctcag taccgttgat aacaaaggta ccgttgtctg tcatgagcgg aatttcgccc
     8641 atgtagactt cttgttcttt aatgtctttt acggtgcctt ccggcgcttc gcgctcatag
     8701 atcaccagac gcagtttaac gcgcagcggt gcggaatagg tcacgccacg gatttgacat
     8761 tcctggacgt caaacaccgg ttcgccaagg cggtagctga cgtattgcag ctcggaatta
     8821 ccgctgtagc tctgaatcgg gaatacggaa cggaaagctg cttccagacc atactgccct
     8881 tcaggatctt gctcgataaa tttctgaaac gagtcaagct ggatagaaag gagataaggt
     8941 acatccagaa cttgtggacg tttaccaaaa tccttacgaa tacgtttttt ctcggtatag
     9001 gagtaaacca tagggttcct cagctcgctg acaagtcgac ccatctgtcc attgagcgga
     9061 cagtttgtgc aacactattt tgttgaccgg aaaatggaac actttccgca atgcctgttg
     9121 ctatcacgct taaaccattt cattgcgatt tacacagaac ggacgtcctg tcgcagtata
     9181 ttaagtcgtc gatagaaaca agcattgaaa ggcacagcag tagtcaaaca gtgtgaaacg
     9241 ctactggcgc cttacagcgc aaaaaggctg gtgactaaaa agtcaccagc catcagcctg
     9301 atttctcagg ctgcaaccgg aagggttggc ttatttaact tcaacttcag cgccagcttc
     9361 ttccagagct tttttcagtg cttctgcgtc gtctttgctc acgccttctt tcagagcagc
     9421 cggtgcagat tctaccaggt ctttagcttc tttcagaccc aggccagttg cgccacgtac
     9481 tgctttgata acagcaactt tgttagcgcc agcagctttc agaattacgt cgaattcagt
     9541 tttttcttca gcagcttcaa ccgggccagc agctacagct acagcagcag cagcggaaac
     9601 accgaatttt tcttccattg cagagatcag ttctacaacg tccattacag acatagctgc
     9661 aactgcttca atgatttgat ctttagtgat agacatttaa attgttcctg aatatcagaa
     9721 taagtttata cgtaagcgaa tgcgttaaaa agataactgc gattaagcag cttctttcgc
     9781 atcgcgtaca gcagccagag tacgaaccag tttgccagcc gaagcttctt tcatggttgc
     9841 catcaggcgt gcaattgctt cttcgtaggt cggcagagtt gccaggcggt cgatctgaga
     9901 cgccgggatc agctcacctt caaaggcagc ggctttgacc tcaaattttg cattcgcttt
     9961 cgcgaactct ttgaacagac gagcagcagc gcccgggtgt tccatagagt atgcaatcag
    10021 ggtcggacca acaaacgcgt ctttcaggca ctcgaacgga gtaccttcaa cagcacggcg
    10081 cagcagggtg ttacgaacaa cacgcatgta tacgccagct tcgcgacctg ctttacgcag
    10141 ttcagtcatt ttatctacag ttacgccacg ggaatccgca actactgcag acagcgcgcc
    10201 tttggctact tcgctgactt cagcaacaat cgcttgtttg tcttgaagat ttaaagccat
    10261 tagctttgct cctggatgtt tgccagagaa aatctctgga actcacttca ctcctccaaa
    10321 cggagagagc gtcttaatta cggtgagcag aaacaagcca gaatataaaa gaataatctt
    10381 agcgttctgt caccgtctac gcaggggatt aagtttcttg cgaaactcct gcggtcttcg
    10441 acggaggcct ggataggcca ggctccaacg aacaaatctt ttctatccgt cgctattcaa
    10501 cttgtggcgg cgttggcttc cttcattcgc accagtcaca tagttagcta tgctcctggc
    10561 gactcactca gttgccgcct tgccacaacc cgaatatctc ggatatacgt ctgcattaag
    10621 cattatacgt gggggtaaga ttgtagacaa aatcaccgcc cacgtaaagg cattagttta
    10681 cagaagcgct caggccagcc tggtcaactg caacacctgc acccatggtg gtggagatgc
    10741 taactttctt gatgtacacg cctttcgcct gagtcggttt tgcttttttc agcgcaacca
    10801 gcagagcttc caggttttct ttcagtttgt cagcgtcaaa gtccacttta ccgatggtgg
    10861 tgtggatgat gccgtttttg tcgttacggt aacgaacctg gccagcttta gcgtttttaa
    10921 ccgcttcagc aacattcggt gttacagtac ccactttcgg gtttggcatc aggccgcgcg
    10981 gacccagaac ctggcccagc tggccaacaa cgcgcattgc atccggagaa gcaataacaa
    11041 cgtcaaagtt catttctcct ttcttgatct ggtcagccag atcttccata cctaccagtt
    11101 ctgcgcctgc agctttagca gcttcagcgt ttgcaccttg ggtaaatacg gctacgcgaa
    11161 cggaacggcc agtaccgtgc ggcagtacag ttgcaccacg tacgttctgg tcagatttac
    11221 gagcgtcgat gccgaggtta acagctacgt ccacgctttc tacgaattta gcagtcgcca
    11281 gctctttcag cagtgcgata gcttcgttga tgtcgtactg tttggttgca tcaactttct
    11341 cgcggataac acgcatgcgc ttggtcagtt tagccatttc ttagtcctcc actaccaggc
    11401 ccatggaacg tgcagtacct tcgatggagc gagtcatcgc ttcaatgtcg gcaccagtca
    11461 tgtcggcagc tttggtctgc gcgatttcct gcagctgagc gcgggaaatt ttacccactt
    11521 tgtctttgtt cggcttaccg gaaccagact tgataccagc cgcttttttc agcagaactg
    11581 ctgccggcgg ggtcttggta acgaaagtga aagaacggtc agcgtaaacg gtgattacta
    11641 ccggaatcgg cagacctttt tcgatggaat cagtttttgc gttgaacgct ttgcagaatt
    11701 ccatgatgtt tacgccctgc tgacccagag ccggacctac tggcggactc gggttagcca
    11761 taccagctgc aacctgcagc ttgacatagg cttgtacttt cttagccatt ataaattcct
    11821 caagttgggt aataacgcct ctgagaggct ccccgtgata taaaaaatcg tttttacggg
    11881 caaggcccat aaaaacaaaa ggcgcgaaat tgtattccaa tctcgcgcct tgtgcaacga
    11941 ttaaatcgcc gcttttttga tcgctgggtt aggctttttc aacctggctg aagtccagct
    12001 ctaccggggt cgcacgaccg aagatagaaa cagacacttt cagacgagat ttctcgtaat
    12061 ccacttcttc aacaacaccg ttgaagtcag cgaacggacc atcattaaca cggaccattt
    12121 cacccggttc aaacagcgtt ttcggacgcg gcttatcacc aacctgctgc aggcggttca
    12181 taatcgcatc gacttcttta tcgctgattg gcgcaggacg atcggaagta ccgccgatga
    12241 agcccatcac tcgcggtacg ctgcgcacca ggtgccagct cgcgtcgttc atcaccatct
    12301 gaacgaggac gtagccaggg aagaatttac gttcgctttt gcgacgctga ccgccacgga
    12361 tttcaaccac ttcttcggtt ggtaccatga cttcaccaaa caaatcttcc atgttgtgta
    12421 atttgatatg ctcacgcagc gacgttgcta cgcggccttc aaaaccggaa aacgcctgaa
    12481 cgacgtacca gcgcttttta ggagcttcag acatctcaga acctcaggcc agtgataaag
    12541 gataccaggc gaaccagaat accatccagt ccccacagga tcagtgacat tactgcggta
    12601 accgcagcca caatcagcgt ggtgtgcaat gtttcctggc gagtcggcca aatgacctta
    12661 cggacttcgg tacgcgcttc acgggcaaaa gcaacggtag ctttaccttt tgtcgttaac
    12721 agcgcgacac cacccgctgc agcaatcaga attactacgg ccagcgcacg cagcggcagc
    12781 ataatgtcgc gataaaggta gttgccgaca atcgccacca agagcaatgc caccacaacg
    12841 acccacttca tcgcttccag gccgcgcccg cttccttgag cttcggtatt cgcactcata
    12901 aaccaacctg tcagaagttt tctacaaaca ttttcacccc gcgatcgcga ggcaaaccaa
    12961 atcgaaacgc gtattagctt ttcggattat acgccctcaa cagagcctgt ctcagcaatg
    13021 attatgacaa agaaaatcac tgatgagcca ggttctggta cgaaagcgtg caaaaagggc
    13081 atcaaatgat gcccttttag tgcgcattgc gtcaaatgtt atcggcaatt agctcagaac
    13141 ttttgctaca acgcccgcgc caacggtacg gccgccttca cggattgcga aacgcagacc
    13201 gtcgtccatc gcgatcgggt ggatcagggt aacaaccatt ttgatgttgt cgcccggcat
    13261 taccatctct acgccttccg gcagttcgat ggtaccagtc acgtcagtag tacggaagta
    13321 gaactgcgga cggtagcctt tgaagaacgg agtatgacgg ccgccttcat ctttggacag
    13381 aatgtacact tcagattcga acttggtgtg cggcttgatg gtgcccggct tagccagtac
    13441 ctgaccacgt tcgatttctt cacgtttgat accacgcagc agaacaccta cgttctcacc
    13501 agcacggcct tcgtccagca gtttgcggaa catttcaacg ccagtacagg tagacttctg
    13561 agtctctttg ataccaacga tttcaacttc ttcaccaact ttgatgatac cgcgttctac
    13621 acgaccggta acaacggtac cacgaccgga gatggagaat acgtcttcga tcggcagcag
    13681 gaacggcttg tcaatcgcac gctctggttc cggaatgtaa gaatccagga agccagccag
    13741 ttccaggatt ttcgcttccc actctgcgtc gccttccagc gctttcagag cagaaccacg
    13801 aacgatcgga gtgtcgtcgc ccgggaagtc gtactgagac agaagttcac gaacttccat
    13861 ttcaaccagt tccagcagct cttcgtcatc aaccatgtcg catttgttca ggaacacgat
    13921 gatgtacgga acgcctacct gacgacccag caggatgtgc tcacgagtct gcggcatcgg
    13981 gc
//
LOCUS       DAJVUN010000107        13906 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.107, whole genome shotgun sequence.
ACCESSION   DAJVUN010000107 DAJVUN010000000
VERSION     DAJVUN010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13906
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.107"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            378..2009
                     /gene="oppA"
                     /locus_tag="OQQ76_002654"
     CDS             378..2009
                     /gene="oppA"
                     /locus_tag="OQQ76_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HCS1969103.1"
                     /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN
                     NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWIFHL
                     RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKTITDL
                     GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT
                     LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPI
                     ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA
                     QGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYN
                     TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT
                     SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV
                     YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH"
     gene            2095..3015
                     /gene="oppB"
                     /locus_tag="OQQ76_002655"
     CDS             2095..3015
                     /gene="oppB"
                     /locus_tag="OQQ76_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HCS1969104.1"
                     /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE
                     VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA
                     AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHW
                     LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR
                     IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGALTILFNAIVDVLYAVIDPKIRY"
     gene            3030..3938
                     /gene="oppC"
                     /locus_tag="OQQ76_002656"
     CDS             3030..3938
                     /gene="oppC"
                     /locus_tag="OQQ76_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HCS1969105.1"
                     /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFIHNRAAVASLM
                     VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR
                     ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF
                     GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNV
                     LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA
                     GFLVVTLFCFNFIGDGLRDALDPKDR"
     gene            3950..4963
                     /gene="oppD"
                     /locus_tag="OQQ76_002657"
     CDS             3950..4963
                     /gene="oppD"
                     /locus_tag="OQQ76_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppD"
                     /protein_id="HCS1969106.1"
                     /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF
                     SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR
                     AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK
                     RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF
                     NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD
                     AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTPGRLCACFKPVE
                     ELL"
     gene            4960..5964
                     /gene="oppF"
                     /locus_tag="OQQ76_002658"
     CDS             4960..5964
                     /gene="oppF"
                     /locus_tag="OQQ76_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HCS1969107.1"
                     /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQQPKTLKAVDGVT
                     LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGIKPDEWRAVRSD
                     IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR
                     YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL
                     IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE
                     KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
                     "
     gene            complement(6017..6346)
                     /locus_tag="OQQ76_002659"
     CDS             complement(6017..6346)
                     /locus_tag="OQQ76_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309775.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HCS1969108.1"
                     /translation="MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEE
                     RGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKL
                     CHIIWRE"
     gene            complement(6381..7841)
                     /gene="cls"
                     /locus_tag="OQQ76_002660"
     CDS             complement(6381..7841)
                     /gene="cls"
                     /locus_tag="OQQ76_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HCS1969109.1"
                     /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII
                     YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP
                     LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEIVFYIWQPGGMADQ
                     VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR
                     MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY
                     SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAR
                     EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG
                     VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ
                     DDYISRSRLLDARLWLKRPLWHRVAERLFYFFSPLL"
     gene            7984..8157
                     /locus_tag="OQQ76_002661"
     CDS             7984..8157
                     /locus_tag="OQQ76_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciY family protein"
                     /protein_id="HCS1969110.1"
                     /translation="MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILN
                     KQRNSLLFAIYNI"
     gene            complement(8212..9465)
                     /gene="kch"
                     /locus_tag="OQQ76_002662"
     CDS             complement(8212..9465)
                     /gene="kch"
                     /locus_tag="OQQ76_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated potassium channel protein"
                     /protein_id="HCS1969111.1"
                     /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN
                     LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY
                     TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY
                     LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT
                     SIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP
                     EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCQAILALSDNDADNAFVVLSAKD
                     MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL
                     NSGHGIFSDNDEQETKADSKESAQK"
     gene            complement(9765..10061)
                     /locus_tag="OQQ76_002663"
     CDS             complement(9765..10061)
                     /locus_tag="OQQ76_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415767.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HCS1969112.1"
                     /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP
                     AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF"
     gene            10276..11004
                     /gene="tonB"
                     /locus_tag="OQQ76_002664"
     CDS             10276..11004
                     /gene="tonB"
                     /locus_tag="OQQ76_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707161.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein TonB"
                     /protein_id="HCS1969113.1"
                     /translation="MTSMTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAP
                     AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK
                     PKPVKKVQEQPKRDIKPVESRPASPFENTAPARLISSTATAATSKPVTSVASGPRALS
                     RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY
                     EPGKPGSGIVVNILFKINGTTEIQ"
     gene            complement(11044..11442)
                     /gene="yciA"
                     /locus_tag="OQQ76_002665"
     CDS             complement(11044..11442)
                     /gene="yciA"
                     /locus_tag="OQQ76_002665"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HCS1969114.1"
                     /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI
                     LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE
                     PIGQRYKATEALFKYVAVDPEGKPRALPVE"
     gene            complement(11547..12086)
                     /locus_tag="OQQ76_002666"
     CDS             complement(11547..12086)
                     /locus_tag="OQQ76_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HCS1969115.1"
                     /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF
                     RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ
                     RMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI
                     FTLLSGIYIYRHMPQEDKS"
     gene            complement(12116..12859)
                     /locus_tag="OQQ76_002667"
     CDS             complement(12116..12859)
                     /locus_tag="OQQ76_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0259 family protein"
                     /protein_id="HCS1969116.1"
                     /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS
                     DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVIL
                     IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL
                     APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI
                     GAVLANTLSNLISAVLLIYLFRLYMLIRQ"
     gene            complement(12887..12976)
                     /locus_tag="OQQ76_002668"
                     /pseudo
     CDS             complement(12887..12976)
                     /locus_tag="OQQ76_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460692.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            13216..13854
                     /gene="ompW"
                     /locus_tag="OQQ76_002669"
     CDS             13216..13854
                     /gene="ompW"
                     /locus_tag="OQQ76_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
                     /protein_id="HCS1969117.1"
                     /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG
                     TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP
                     TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG
                     VDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF"
BASE COUNT         3729 a         3271 c         3426 g         3480 t
ORIGIN      
        1 taaggcatgg atgcaagcta tagattctga tacggtcaat aaaagagaat tgcttaacaa
       61 ttttgcaaaa tgtattggcg agtaagaacc gcatttggta ctttccgggc aaccgccaga
      121 cgattcttta ttggtaatga gaataattaa caattaaaga gcgtcgcgaa agaataatgt
      181 gtctcgacag gggagacaca gtacgaatcg acataaggtg atcgtctgaa tcaccagaat
      241 aaataaagtc ggtgatagca atccgtaacg ataaagtaac ctgacagcag aaagtctccg
      301 agcctgtgca gggtcccaat ccgggattac acatgctggt taataccagt aattataatg
      361 agggagtcca aaaaacaatg accaacatca ccaagagaag tttagtagca gctggcgttc
      421 tggctgcgct aatggcaggg aatgtcgcgc tggcagctga tgtacccgca ggcgtcacac
      481 tggcggaaaa acaaacgctg gtacgtaaca atggttcaga agttcagtca ttagatccgc
      541 acaaaattga aggtgttccg gagtctaata tcagccgaga cctgtttgaa ggcttactgg
      601 tcagcgatct tgacggtcat ccggcacctg gcgtcgctga atcctgggat aataaagacg
      661 cgaaagtctg gatcttccat ttgcgtaaag atgcgaaatg gtctgatggt acgccagtca
      721 cagcacaaga ctttgtgtat agctggcaac gttctgttga tccgaacact gcttctccgt
      781 atgccagtta tctgcaatat gggcatatcg ccggtattga tgaaattctt gaagggaaaa
      841 aaacgattac cgatctcggc gtgaaagcta ttgatgatca cacattagaa gtcaccttaa
      901 gtgaacccgt tccgtacttc tataaattac ttgttcaccc atcaacttca ccggtgccaa
      961 aagccgctat cgagaaattc ggcgaaaaat ggacccagcc tggtaatatc gtcaccaacg
     1021 gtgcctatac cttaaaagat tgggtcgtaa acgaacgaat cgttcttgaa cgcagcccga
     1081 cctactggaa caacgcgaaa accgttatta accaggtaac ctatttgcct attgcttctg
     1141 aagttaccga tgtcaaccgc taccgtagtg gtgaaatcga catgacttat aacaacatgc
     1201 cgatcgaatt gttccagaag ctgaaaaaag agatcccgga cgaagttcac gttgatccat
     1261 acctgtgcac ttactattac gaaattaaca accagaaacc gccattcaac gatgtgcgtg
     1321 tgcgtaccgc actgaaacta ggtatggacc gcgatatcat tgttaataaa gtgaaagcgc
     1381 agggcgacat gcccgcctat ggttacactc caccgtatac tgatggcgca aaattgactc
     1441 agccggaatg gtttggctgg agccaggaaa aacgtaacga agaagcgaaa aaactgctgg
     1501 ctgaagcggg ttataccgca gacaaaccgt tgaccatcaa cctgttgtat aacacctccg
     1561 atctgcataa aaagctggcg attgctgcct cttcattgtg gaagaaaaac attggtgtaa
     1621 acgtcaaact ggttaaccag gagtggaaaa cgttcctcga cacccgtcac cagggtactt
     1681 ttgatgtggc ccgtgcaggc tggtgtgctg actacaacga accaacttcc ttcctgaaca
     1741 ccatgctttc gaacagctcg atgaataccg cgcattataa gagcccggcc tttgacagca
     1801 ttatggcgga aacgctgaaa gtgactgacg aggcgcagcg cacagctctg tacactaaag
     1861 cagaacaaca gctggataag gattcggcca ttgttcctgt ttattactac gtgaatgcgc
     1921 gtctggtgaa accgtgggtt ggtggctata ccggcaaaga tccgctggat aatacctata
     1981 cccggaatat gtacattgtg aagcactaat ggcaatacgt ggggcaggag tgtcctgctc
     2041 cacggtgtct gatttttatc gcattacaga aggcacaggc cagaaggtag ggcaatgtta
     2101 aaatttattc tacgtcgctg tctggaagcg attccgacgc tatttattct tattactatt
     2161 tcgttcttta tgatgcgcct cgcgccggga agccctttta ccggcgaacg tactttaccg
     2221 ccagaagtga tggccaatat cgaagcgaaa tatcatctta atgatccgat catgacacag
     2281 tatttcagct acctgaaaca actggcgcac ggtgatttcg gtccatcgtt taaatataaa
     2341 gattattcgg tcaatgactt ggttgcatcc agttttcccg tttctgccaa actgggagcc
     2401 gcagcatttt tccttgcggt aatactgggt gttagtgctg gcgttattgc cgcattaaaa
     2461 caaaacacca aatgggacta taccgtgatg gggctggcaa tgaccggggt tgttatcccc
     2521 agttttgtgg ttgcaccatt attagtcatg atatttgcga tcattttgca ttggctgccg
     2581 ggcggtggct ggaatggtgg ggcgcttaaa ttcatgatat tgccgatggt ggcgttgtca
     2641 ctcgcttata tcgccagtat tgcgcgtatt acccgtggct ctatgattga agtattacac
     2701 tccaatttta ttcgtactgc ccgggcgaaa gggttaccta tgcggcggat cattttacgt
     2761 cacgcattaa aacctgctct gttacccgtg ctctcttata tgggccccgc atttgtcggc
     2821 attattaccg gttctatggt tatcgaaacc atttatggtt tgccggggat tggacaactg
     2881 ttcgttaatg gcgcattgaa ccgtgactat tccttagtgt taagcctgac catcctggtt
     2941 ggtgctttaa ccattttgtt taatgccatt gtcgatgtgc tatatgcggt tatcgacccg
     3001 aaaatccgtt actgatactg gagctcgcga tgatgttaag taagaaaaac agcgagacgc
     3061 tggaaaattt cagtgaaaag ctggaggtcg aagggcgcag cttgtggcag gacgcacgtc
     3121 gacgttttat tcataaccgt gcggcggttg ccagtctgat ggtgctggtg ctgatcgcgt
     3181 tatttgtaat cctggcaccg atgctttccc agtttgccta tgacgatact gactgggcga
     3241 tgatgtccag cgccccggat atggagtccg gtcactactt tggtactgac tcatccggtc
     3301 gcgacctgct tgtgcgcgtt gcgattggtg ggcgtatctc actcatggtc ggtgttgctg
     3361 cggcactggt ggctgtggtc gtcgggacac tttatggttc gctttccggt tatctgggcg
     3421 gtaaagtgga ttcggtaatg atgcgtctgc tggaaatcct caactccttc ccattcatgt
     3481 tcttcgtcat tttgctggtg acctttttcg gtcaaaacat cctgctgatt ttcgtggcga
     3541 taggcatggt ttcctggctg gatatggctc gtattgtgcg tgggcaaacc ctgagtctga
     3601 agcgcaaaga gtttattgag gcggcacaag ttggcggtgt atcgacatcg ggcattgtta
     3661 ttcgccacat tgtgccgaat gtactcggtg tggtggtggt ctacgcatca cttctggtgc
     3721 ccagcatgat cctctttgaa tctttcctta gcttcctggg gttgggtacg caagagccgt
     3781 taagcagctg gggtgcattg ctgagtgatg gcgcgaactc gatggaagtc tctccatggt
     3841 tattgttgtt cccagcggga ttcctcgtgg tgacgctgtt ttgtttcaac tttatcggcg
     3901 atggcttgcg tgatgccctc gacccgaaag atcgttaagg agtgcagcca tgagcgtaat
     3961 tgaaacggca actgtgccgc tcgcacaaca acaggctgac gcactgctga acgtgaaaga
     4021 tttgcgtgtc acctttagta ccccggacgg cgacgtcacg gcggtcaatg atttgaattt
     4081 ttccctacgt gccggagaaa cgctgggtat tgtaggtgag tctggttcgg gtaaatcgca
     4141 aactgcattt gcgttgatgg gcctgttggc tgccaacgga cgtattggcg gatcggcaac
     4201 cttcaatggg cgtgaaatcc tcaatttgcc agagcatgaa ctcaataaac tgcgcgctga
     4261 acaaatctca atgatttttc aggacccaat gacttcgttg aatccctata tgcgcgtcgg
     4321 tgagcagttg atggaagtgc tgatgctgca taagaacatg agcaaagctg aggcgtttga
     4381 agagtcggtg cggatgctcg atgcggtaaa aatgccggaa gcacgtaaac gcatgaaaat
     4441 gtacccgcac gagttttctg gtggcatgcg tcagcgagtt atgattgcga tggcattgct
     4501 atgtcgacct aagctgctga ttgcggatga acccactaca gcgctggacg tcaccgtaca
     4561 ggcgcagatc atgacgctat taaatgaact gaaacgggaa tttaataccg ccatcattat
     4621 gattacccac gatcttggcg tggtggcggg gatctgtgac aaagtgctgg taatgtacgc
     4681 cgggcgcacg atggaatatg gcaacgcgcg cgatgtcttt tatcaacccg ttcatcctta
     4741 ttctatcggt ttgctcaacg cggtgccgcg tctcgatgcg gaaggtgaaa caatgttgac
     4801 catcccgggt aatccgccaa acctgctgcg attaccgaaa ggttgcccgt tccagccacg
     4861 ttgtccgcat gcgatggaaa tttgtagtag cgcaccgccg ctggaagagt ttacgcctgg
     4921 ccgtctgtgt gcttgcttta aaccggtgga ggaactgtta tgaatgctgt aaccgaagga
     4981 agaaaagtcc tccttgaaat cgccgatctg aaagtgcact ttgaaatcaa agatggcaaa
     5041 cagtggttct ggcaacagcc gaaaacgctc aaagccgtcg atggtgtcac gcttcgcctg
     5101 tatgaagggg aaacattagg tgtggtaggg gaatcgggat gcggtaagtc cacctttgct
     5161 cgcgccatca ttggcctggt taaagcgacc gacggtcatg ttgcctggtt aggtaaagag
     5221 ttgctgggca ttaagcccga tgaatggcgt gccgttcgca gtgatattca gatgattttc
     5281 caggatccat tggcatcgct aaacccgcgc atgaccatcg gcgagatcat cgctgaacca
     5341 ctgcgtactt atcatccgaa aatgtcacgt caggaagttc gcgagcgcgt gaaggcgatg
     5401 atgctgaaag tcgggttatt gcctaacctg attaaccgct atccgcatga gttctccggt
     5461 gggcagtgcc agcgtatcgg gattgctcgt gctcttattc ttgaaccgaa gctgattatc
     5521 tgtgatgagc cggtgtcggc gctggacgtg tcaattcagg cgcaggtggt caacctgctc
     5581 cagcagctgc aacgtgagat gggattgtca ttaattttta ttgctcatga cctggccgtg
     5641 gtaaaacaca tttccgatcg tgtgttggtg atgtatctcg gccatgcggt agaactgggg
     5701 acctatgatg aggtctacca caatccacta catccttaca ccagggcatt gatgtcggca
     5761 gtccccatac ctgatccgga tctggagaag aacaaaacca tccagttact ggaaggggaa
     5821 ttaccgtcgc cgatcaaccc gccttccggt tgtgttttcc gtacccgttg cccgattgcc
     5881 ggtccggagt gcgccaaaac acgtcctgtg ctggaaggga gtttcagaca cgccgtttct
     5941 tgcctgaaag tcgatccgct ttaaacacaa taagggctga cagttgtcag ccctttttca
     6001 cgccgaaagc gattatttat tcccgccaga tgatatggca aagtttgtga tctttttcgc
     6061 ggcataacag aatgcgggcg aaaacatcgt tgatttcacc atcctcactg tccgccagac
     6121 caatcaccac ttcggcaaaa aagtccgggt tcaaatcgaa atcaacatgt tcctgccagt
     6181 cttccgccgg atcgaataac tccgcgccgc cgcgctcttc aaactgaaga ttgaacagca
     6241 gaacatcagc tgggtcgaga ttgtcggcag ccagttcgag aaaaatatcg taggcctgct
     6301 caagcgtttc atcttcagtc aggcgattgt ttagatccat atccatagtc actacctgtt
     6361 taacctctgt tggagatgtt ttacagcaac gggctgaaga agtaaaacag tcgctcggcg
     6421 acacgatgcc ataatggacg ttttagccat aaacgggcat cgagcagacg tgaacgcgaa
     6481 atataatcgt cctgaacggc ggcaaggtct gcaccaaaac ctttatcgtc gattgccagg
     6541 gtaatctcga aattcagcca cagactacgc atatcaaggt taacggtgcc aaccagactt
     6601 agttcgccat cgaccagcac gctcttggta tgcagtaacc cgccttcaaa ctgataaatt
     6661 ttaaccccag cagcaagaag ttccgtaaag aatgcgcgac tggcccagcc gaccagcatc
     6721 gagtcatttt ttcgcggaag gataatactg acatccaccc cgcgctgtgc cgccgtgcaa
     6781 atcgcatgaa gtaaatcatc gcttggcaca aagtagggcg tggtcatgat caaatattca
     6841 cgcgccgaat aagccgcagt caataatgcc tggtgaatga gatcttccgg aaagccgggg
     6901 ccagaagcaa ttgtgtgaat ggtgtgaccg ctggcctgtt caaacggcat aatattgaca
     6961 tctggtggtg gcggcagaat acgttttccg gtttcaatct cccagtcgca ggaataaata
     7021 atccccatcg cggtggcgat ggggccttcc atacgcgcca tcagatcaat ccattgccct
     7081 acgcccgcat cttgtttgaa gtagcgagga tcgaccatat tcatgctgcc ggtgtacgcg
     7141 atgtaattat cgatcatgat catcttgcga tgttggcgca ggtccatacg gcgtaaaaac
     7201 acacgcatca gattgacctt taaggcttcg accacttcaa taccggcatt acgcattagc
     7261 tcgggccacg ggctgcggaa aaaagccaca ctcccggcgg agtcgagcat caatcggcaa
     7321 tgaatgccgc gtcgcgcagc ggccattaat gattcagcca cctggtccgc catgccgccg
     7381 ggctgccaga tataaaacac aatctcaata ttatggcgcg cgagctggat gtcgcggatt
     7441 aacgcctgca tcacatcatc tgactcggtc atcagttgta gctgattccc tttgacccca
     7501 gcgatcccct gacgacgctc gcaaagcttg aataatggcg cagcgacact gctattttct
     7561 tcggcgaaga tatgcttaca ggctttaagg tcgttaagcc attttgcggt ggaaggccac
     7621 atcgctctgg cgcgctcagc gcggcgtttg cctaaatgga gctcgccaac ggcaagatag
     7681 gcaataattc cgactaacgg cagaatgtaa ataatcaaca gccaggccat cgcggaggga
     7741 actgcgcgtc gtttcattag aatgcgtaaa gttacgcctg caatgagcaa ccagtatccc
     7801 agaatggcca accaactcac caacgtataa acggttgtca tagattagaa atccttttga
     7861 aagcgcattg ttatgagttt acgcatatgg attcatctgg caaataaaaa cgcgggaaaa
     7921 gcactggtca gcgtcggggg cgggggtata atgaccattc tgttattgca tagagtagtt
     7981 aacatgaagc ggagtagaac ggaagtgggg cgctggcgca tgcagcgtca ggctagccga
     8041 cgtaaatcgc gttggcttga ggggcaatcg cgccgaaata tgcgtatcca cagcatcagg
     8101 aagtgcattc taaacaaaca gcgtaactcg ttattgtttg cgatctacaa tatctaaatg
     8161 tactgggcac cattgcggtg cccaataagt ttactcctct atctttaaac tctatttttg
     8221 cgccgattct ttactgtcag ctttcgtttc ttgttcatcg ttatcgctga aaatgccatg
     8281 accggagttc aacaacattg aaacgagcat atcattatta atctcttcac catttaaaac
     8341 tcgcgccaga atttcgctgc caaacagttg cggtgagaga atgatatccg gatgtaccat
     8401 cttaatctta ttcaggtttt tgctatcact gacggcgaga actgttttga catcactgct
     8461 catatctttt gccgagagta caacaaacgc gttatctgca tcgttatcac tcagcgccag
     8521 aatggcctgg caacgatcga ttcccgcttt ctttaatact gaactgtcat tactgtcacc
     8581 ggggataaca tcagcgttat cgcctaagcg ttgctcaagt tgcttgatat catcttcagg
     8641 caagttgctg ataaccgtta cgttttgtcc gcgttgattc agttgcagaa tcgtattgat
     8701 ggcgagaatc gaatgtccgc aaacaataaa atgatcttta cgatgcattg tatgattgtt
     8761 tccttttaca agtttgttga atcccccgcg gataagcgga ccaaaaattg aggtcataga
     8821 tgtggcaaaa acggtaatac cggaaataat gaccgaaata gtgaacaatc gtgctgattc
     8881 agaaacaggg acaatatcgc catagccgac ggttgacatg gtttctatcg aaaaatagaa
     8941 cgcggtcatc aaactttcta ttcgcggatt aaaaccttcg cttaaataaa gcgcaccgta
     9001 ggttgagtaa aacagtaatg tcgtgaaact aataaatgca aaaattgtcc cggctgcggc
     9061 gctactgtgg gagaagtctt tgcgcagtat cagcaaaaac accagcgtaa aaatgcaaaa
     9121 tccaatacta aatttcaacc agggataaaa atgcagggta taaattagcg ctatcaacaa
     9181 caaaatgata ctgattgccc atgcgagctt tgcccggaac agtaagccaa tggagttcag
     9241 gacaagaaag acgccgagca taaatagtgg ggcgtttgcc agcaaggaga gatccaactc
     9301 tgaaaatgct ttgatatgga aaatatctag caaattgacc gacataccat agattgtttt
     9361 aaaaataagc aatccattta aaaagacggc cagcgcgaga atgtcgtgcc gtagggtcac
     9421 ccataaattt gttgctgttt gtttgaatgt agcccagtga ctcactgata cctctgtaac
     9481 cacaattttg tttaattatc ttagcgtgca cattttctga acatacatgc agcgcgtgaa
     9541 tgtgttaaac aatagtagat gactttatcc gcagtaatca aaggttttga gcgagcaact
     9601 gtacctcagg aaaggtcatt tttcctgaat atgctcacat catataaaga aatacagata
     9661 aagttattat ctgcttgtgg tggtgaatgc actgaccggc tataaggaaa ggccaaacaa
     9721 gaacacggtt gcaaaaaccg tgcccttaaa tattgaatct ctattcagaa cactttctta
     9781 aatggtttca ctgaaacgtg ttcatagact cctgccgcta cgtacgggtc agcatcggcc
     9841 caggcctgag ctgcttccag cgattcaaat tcagcaataa cggttgagcc agtaaatccc
     9901 gcagcccctg gatcgttact gtctaccgct ggcattggac cagctgtcaa caaacgacct
     9961 tcatcatgca gtaactgtaa acgtgctaaa tgtgccggac gaacggaaag gcgtttttcg
    10021 aggctatcag ctttgtcttg agcgtaaata acatacaaca cgggcacaac tccttgttcg
    10081 ggaaagttgt aaagtacgtt atttgaaagg gcgaagatct gcaacggaaa gatgatgtct
    10141 ttgttaaaac catgtataaa gtaaggttaa ttacggcaaa aatgacattt tcactgatcc
    10201 tgatcgtctt accttattga atatgattgc tatttgcatt taaaatcgag gcttggtttt
    10261 tctactgaaa tgattatgac ttcaatgacc cttgatttac ctcgccgctt cccctggccg
    10321 acgttacttt cggtctgcat tcatggtgct gttgtggcgg gtctgctcta tacctcggta
    10381 catcaggtta ttgaactacc tgcgcctgcg cagccaattt ctgtcacgat ggttgcgcct
    10441 gctgatctcg aaccgccaca agccgttcag ccgccaccgg agccggtggt agagccagaa
    10501 ccggaacctg agccgatccc cgaaccgcca aaagaagcac cggtggtcat tgaaaagccg
    10561 aagccgaaac ctaagccaaa accgaagccg gtgaaaaagg tacaggagca gccaaaacgc
    10621 gatatcaaac ccgtagagtc gcgtccggca tcaccgtttg aaaatacggc accggcacgc
    10681 ctgatatcaa gtacagcaac ggctgcaacc agcaagccgg ttaccagtgt ggcttcagga
    10741 ccacgcgcat taagccgtaa tcagccgcag tatccggcac gagcacaggc attgcgcatt
    10801 gaagggcagg ttaaagttaa atttgacgtc acgccggatg gtcgcgtgga taacgtacaa
    10861 atcctctcag ccaagcctgc gaacatgttt gagcgtgagg tgaaaaatgc gatgcgcaga
    10921 tggcgttatg agccgggtaa gccaggcagt gggattgtgg tgaatatcct gtttaaaatt
    10981 aacggcacca ccgaaattca gtaagcagaa agtcaaaagc ctccgaccgg aggcttttga
    11041 ctattactca acaggtaagg cgcgaggttt tccttcagga tcaaccgcga catacttaaa
    11101 taatgcttct gtcgctttat agcgttgccc gattggttca gacgctactt ttttcaccca
    11161 cacttcaata ttaatgctga ccgatgtcgt ccctttctgg acacagcgtg catagcagca
    11221 caccacatcg ccgaccgcaa ccggccgtaa gaaagtcatt ccttcaaccc gcacggtcac
    11281 tacgcgaccg tgggcaattt ctttcgccag aatagcgccg ccaatatcca tttgtgacat
    11341 taaccaacca ccaaagatgt caccattggc attggtatcg gcgggcatgg ctaaagtacg
    11401 taaaacaaga tcgccctgag ggacgttatg tgttgtagac atggtaaaac cgacttaaaa
    11461 ggaaaatcac aggcgcgatg ctactatgat tttcctgagg agaacagagg agatacagcg
    11521 ccagccccga aggactggca gtctggttag gatttatctt cctgcggcat gtggcggtag
    11581 atatagatac cgcttaacaa tgtgaagatt aaggtaaggg cggtcagtcc aaagacttta
    11641 aagttgaccc aaatattttg cggcagccag aatgcgatgt agatgtttgc cagaccgcaa
    11701 aggataaaga aaacagccca ggccagattc agcttcgacc ataccggttg cggcagcgtg
    11761 agttctttac ccagcatccg ctgaattagc ggctttttca tcacccattg gctgactaac
    11821 agggctcccg caaacagagc ataaatgact gtaaccttcc atttaataaa ctcatcattg
    11881 tggaagaaca gcgtcaagcc accgaagacg accaccagaa caaaagtgat cagggccatc
    11941 ttctcaacct tacgaaagcg aacccagcta tagataagca caatcgccgt ggcgacgatc
    12001 agcgccgcag tagccgcata gatgtcataa atcttgtaaa acgcgaaaaa gacaaccagc
    12061 ggtaaaaaat caagaaactg cttcatttta cgattccgta atcaaatgct taaggttatt
    12121 ggcgaatcaa catatacaga cggaacagat agatgagcaa tacggctgaa atcaggttgc
    12181 tcaaggtgtt cgccagtacg gcaccaattt ccggggttaa tgcggcaaaa gaagaggcaa
    12241 aaagcagcaa cagtgttttt gccagcaacc agctcagtac tgcgggtgcc accagacgca
    12301 tattcgccca agtcagccgc atactgctac gcatcgaggc aaaaatgccc attttgtcct
    12361 gtaccagcat caccggtgcc agggccagta aaatggccat gataattccc ggaacgacca
    12421 ctagcatgat gccaatctgt actaaaaggg tagtcagaaa aatcagaata aataactttg
    12481 gcaatatcgg cgcactggca ccaatagctc gcagcgcact gactctctga cccgcagaca
    12541 ccagctggat aattaatatt acgcctccgg cgagaatggc gttaccgatt aatcctgaaa
    12601 aagtggacgc cgctgaagcc tgcagcaaaa tttgttgctg ttccggtgac atattctgaa
    12661 ccaggtcgaa caacccacta ctgccgctaa cgggcacgcc gtcattgagc tgcgcaagct
    12721 gtgcatcact gggtgagaaa acatgcccta acaccactgt gataaacgca catagcaacg
    12781 ataccaacag aatggtcata aattgattac ggaagaaatt tccggtgtca cggtatacgg
    12841 actgcgccgt gatagacatg cactctcctt gagttttatg caggtgttaa ttagcgggca
    12901 attgtaccct ggttaagcct cgggtggcag catcaggtct tgtatggaaa agcatatctt
    12961 tgtaaagcgg aggtaattgc tggccttcag gcgtgggcaa accgcggcaa gtggcgatcg
    13021 agttaatatt tgcgtagcga aaatatttaa aaattgattt aaatcacgtt aaccaggatt
    13081 ctcaatgcaa cttctaaatt aatccagatc aataaagggt gaattatcat atgtaatgtg
    13141 atctatgtag gatcatttgt tactccaatg taggtatatt cgtcacgttt ttataaccat
    13201 aacgacggag cggatatgaa aaagttaaca gtggcggctt tggcagtaac aactcttctc
    13261 tctggcagtg cctttgcgca tgaagcaggc gaatttttta tgcgtgcagg ttctgcaacc
    13321 gtacgtccaa cagaaggtgc tggtggtacg ttaggaagtc tgggtggatt cagcgtgacc
    13381 aataacactc aactgggctt gacgtttact tatatggcga ccgacaacat tggtgtggaa
    13441 ttactggcag cgacgccgtt ccgccataaa atcggcaccc gggcgaccgg cgatattgca
    13501 accgttcacc atctgccacc aacactgatg gcgcagtggt attttggtga tgccagcagc
    13561 aaattccgtc cttacgttgg ggcaggtatt aactacacca ccttctttga taatggattt
    13621 aacgatcatg gcaaagaggc agggctttcc gatctcagtc tgaaagattc ctggggagct
    13681 gccgggcagg tgggggttga ttatctgatt aaccgtgact ggttggttaa catgtcagtc
    13741 tggtacatgg atatcgatac caccgccaat tataagctgg gcggtgcaca gcaacatgat
    13801 agcgtacgcc tcgatccgtg ggtgtttatg ttctcagcag gatatcgttt ttaattccgc
    13861 acaaaaacga ccccgtaata tacggggtca ataaggacat ggcata
//
LOCUS       DAJVUN010000108        13875 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.108, whole genome shotgun sequence.
ACCESSION   DAJVUN010000108 DAJVUN010000000
VERSION     DAJVUN010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13875
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.108"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..401
                     /locus_tag="OQQ76_002670"
     CDS             <1..401
                     /locus_tag="OQQ76_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416206.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969118.1"
                     /translation="ATITAAIIYLYPSPLVCNAGAFVIGFSAAGGILQLGVSVMSEFF
                     PKSKAKVTSIYMMMGGLANFVIPLITGYLSNIGLQYIIVLDFTFALLALITAIIVFIR
                     YYRVFIIPENDVRFGERKFSTRLNTIKHRG"
     gene            413..1279
                     /gene="ydiB"
                     /locus_tag="OQQ76_002671"
     CDS             413..1279
                     /gene="ydiB"
                     /locus_tag="OQQ76_002671"
                     /EC_number="1.1.1.282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinate/shikimate dehydrogenase"
                     /protein_id="HCS1969119.1"
                     /translation="MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEV
                     DNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLR
                     GYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF
                     FDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVN
                     DISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFP
                     LEYVKQVMGFGA"
     gene            1311..2069
                     /gene="aroD"
                     /locus_tag="OQQ76_002672"
     CDS             1311..2069
                     /gene="aroD"
                     /locus_tag="OQQ76_002672"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HCS1969120.1"
                     /translation="MKTVTVKDLVIGTGAPKIIVSLMAKDIARVKSEALAYREADFDI
                     LEWRVDHFADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR
                     AAIDSGLVDMIDLELFTGDDQVKEAVACAHAHDVKVVMSNHDFHKTPEAEEIIARLRK
                     MQSFNADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEV
                     FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA"
     gene            2215..3810
                     /locus_tag="OQQ76_002673"
     CDS             2215..3810
                     /locus_tag="OQQ76_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HCS1969121.1"
                     /translation="MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEAT
                     TLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRI
                     SELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKE
                     DLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNN
                     GGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD
                     DSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVDIADGIGLVAREEGCADDFILTVET
                     GPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKF
                     NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIQELPEI
                     TFSGKIALERELDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPE
                     LKLMDERLFIDAAMGFVLPEAAH"
     gene            3824..4975
                     /locus_tag="OQQ76_002674"
     CDS             3824..4975
                     /locus_tag="OQQ76_002674"
                     /EC_number="1.3.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310429.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCS1969122.1"
                     /translation="MDFSLTEEQELLLASIRELITTNFAEEYFRTCDQNGTYPREFMR
                     ALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSA
                     EQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAK
                     EYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEV
                     EESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH
                     NQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAI
                     QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK"
     gene            complement(5018..5929)
                     /locus_tag="OQQ76_002675"
     CDS             complement(5018..5929)
                     /locus_tag="OQQ76_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCS1969123.1"
                     /translation="MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNET
                     ELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQ
                     GAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAIL
                     YYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFT
                     KEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPS
                     DYRRQFKNCFAEQEILSEFPQPVSLVG"
     gene            6245..7009
                     /locus_tag="OQQ76_002676"
     CDS             6245..7009
                     /locus_tag="OQQ76_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HCS1969124.1"
                     /translation="MKIITCFKLVPEEQDIVVTPEYTLNFDNADAKISQFDLNAIEAA
                     SQLATDDDEIAALTVGGLLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALA
                     AAIEKIGFDLLIFGEGSGDLYAQQVGLLVGEILQLPVINAVSAIQRQGNTLVIERTLE
                     DDVEVIELSVPAVLCVTSDINVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPLAEL
                     VGIRVPPQTERKHIIIDNDSPEAITELAEHLKKALN"
     gene            7029..7967
                     /locus_tag="OQQ76_002677"
     CDS             7029..7967
                     /locus_tag="OQQ76_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HCS1969125.1"
                     /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV
                     MPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQL
                     NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
                     QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGHGLAAQDDLKMVHELAA
                     VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVI
                     VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR"
     gene            8023..9312
                     /locus_tag="OQQ76_002678"
     CDS             8023..9312
                     /locus_tag="OQQ76_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1969126.1"
                     /translation="MSDDKFDAIVVGADVAGSVAALVMARAGLDVLVIERGDSAGCKN
                     MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS
                     YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
                     GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD
                     GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY
                     SAHMVPEGGLAMVTQMVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA
                     KEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMF
                     TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL"
     gene            9309..9602
                     /locus_tag="OQQ76_002679"
     CDS             9309..9602
                     /locus_tag="OQQ76_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS1969127.1"
                     /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKA
                     CPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG"
     gene            9659..11305
                     /gene="fadK"
                     /locus_tag="OQQ76_002680"
     CDS             9659..11305
                     /gene="fadK"
                     /locus_tag="OQQ76_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310435.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="medium-chain fatty-acid--CoA ligase"
                     /protein_id="HCS1969128.1"
                     /translation="MKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVV
                     DNHGATYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVS
                     VPLLPSWREAELVSVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL
                     APATSSLSLSPIIADNTSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASER
                     AYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQ
                     RCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVY
                     GSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDARKTLPPGCEGEEASRGPNV
                     FMGYFDEPELTARALDEEGWYCSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVE
                     DILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLSLEEVVAFFSRKRVAKYKY
                     PEHIVVIEKLPRTASGKIQKFLLRKDIMRRLTQDVCEEIE"
     gene            complement(11362..13740)
                     /gene="ppsA"
                     /locus_tag="OQQ76_002681"
     CDS             complement(11362..13740)
                     /gene="ppsA"
                     /locus_tag="OQQ76_002681"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HCS1969129.1"
                     /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS
                     VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQA
                     ELENAIREAYAQLSADDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV
                     KHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV
                     VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHG
                     KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQ
                     ARPETVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVL
                     VTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENV
                     TVSCAEGDTGYVYAELLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNKGVG
                     LARLEFIINRMIGVHPRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATL
                     GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFAL
                     ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGENGLKIIMMCEIP
                     SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA
                     AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK"
BASE COUNT         3534 a         3430 c         3528 g         3383 t
ORIGIN      
        1 tggcaacaat aacagcagcc attatctatc tgtacccttc tccactggtg tgtaatgccg
       61 gcgcctttgt tatcggtttc tcagcagctg gcggcatttt acagctcggt gtttcggtca
      121 tgtcagagtt tttcccaaaa agcaaagcca aagtcaccag tatttatatg atgatgggtg
      181 gactggctaa ctttgttatt ccgctgatta ccggttatct gtcgaacatc ggccttcaat
      241 atatcattgt tctcgatttt actttcgcgc tgctggccct gattaccgca attattgttt
      301 ttatccgcta ttaccgcgtt tttattattc ctgagaatga tgtgcggttt ggcgagcgta
      361 aatttagcac ccggttaaac acaattaagc atagaggtta aaggagttaa ttatggatgt
      421 taccgcaaaa tacgaattga ttgggctgat ggcctatcct atccgccaca gtttatcgcc
      481 tgaaatgcag aataaagcct tagaaaaagc gggattgcca tttacctata tggcctttga
      541 agtggataac gatagttttc ccggagcaat tgaaggatta aaagctctaa aaatgcgcgg
      601 aactggtgta tcaatgccga acaaacaact ggcttgtgaa tatgttgatg aattaacgcc
      661 agcagccaaa ctggtgggtg ccatcaacac catcgttaat gatgatggct acctgcgcgg
      721 ctataacacc gacggcacgg gccatattcg cgccattaaa gagagcggtt ttgatatcaa
      781 aggcaaaaca atggtgctgt taggggccgg aggtgcctca acggcgattg gcgcgcaggg
      841 ggcaattgaa ggtttaaaag aaattaaact ctttaaccgt cgggatgagt tcttcgataa
      901 agccctcgcc ttcgcgcagc gggttaacga aaacaccgat tgtgtcgtca cggttaccga
      961 tctcgccgat cagcaagcct ttgctgaagc cctggcttcc gccgacattt taaccaatgg
     1021 cacaaaagtg ggtatgaaac cccttgagaa tgaatcatta gttaatgata tcagtctgtt
     1081 acatccggga cttctggtca ctgaatgcgt gtataacccg catatgacga agttattgca
     1141 gcaggcgcaa caagctggtt gcaaaacgat tgatggatac ggcatgttgt tgtggcaagg
     1201 ggctgaacag ttcacgttat ggactggcaa agatttccct ctggaatatg ttaaacaggt
     1261 catggggttc ggtgcctgac aggctgaccg cgtgcagaaa gggtaaaaaa atgaaaaccg
     1321 taactgtaaa agatctcgtc attggtacgg gcgcacctaa aatcatcgtc tcgctgatgg
     1381 cgaaagatat cgcccgcgtg aaatccgaag ctctcgccta tcgtgaagcg gactttgata
     1441 ttctggaatg gcgtgtggac cactttgccg acctctccaa tgtggagtct gtcatggcgg
     1501 cggcaaaaat tctccgcgaa accatgccag aaaaaccgct gctgtttacc ttccgcagtg
     1561 ccaaagaagg cggcgagcag gcgatttcca ccgaggctta tattgctctc aatcgtgcag
     1621 ccatcgacag cggcctggtt gatatgatag atctggagtt atttaccggc gatgatcagg
     1681 ttaaagaagc cgtcgcctgc gcccacgcgc atgatgtgaa agttgtcatg tccaaccatg
     1741 acttccataa aacgccggaa gccgaagaaa tcattgcccg tctgcgcaaa atgcagtcct
     1801 tcaacgccga tattcctaag attgcgctga tgccgcaaag taccagcgat gtgctgacgt
     1861 tgcttgccgc gaccctggag atgcaggagc agtatgccga tcgtccaatc atcacaatgt
     1921 caatggcaaa aactggcgta atttctcgtc tggctggtga agtatttggc tcggcggcaa
     1981 cttttggtgc ggtaaaaaaa gcctctgcgc cagggcaaat ctcggtaaat gatttacgca
     2041 cagtattaac tattttacat caggcataag caataatatt tcggcgggaa tatcctcccc
     2101 cgccgaacta aaaaaaatat attcaaccgt atttaataaa aatatttcgt gagtctctgt
     2161 gcgctaaata tccatctggc gtagggaaaa tcacacctga atcaggaatt aacaatgaaa
     2221 cctgtaaaac cacctcgtat taatggacga gtgccggtcc tgtcggcaca ggaagcggtg
     2281 aattatattc ccgacgaagc aacactttgt gtgttaggcg ctggcggcgg tattctggaa
     2341 gccacgacgt taattactgc tcttgctgat aaatataaac agactcaaac gccacgtaat
     2401 ttatcgatta ttagtccaac agggcttggc gatcgcgccg accgtggtat tagtccgctg
     2461 gcgcaagaag gtctggtgaa atgggcatta tgtggtcact ggggacaatc gccgcgtatt
     2521 tctgaactcg cagaacaaaa taaaattatt gcttataact atccacaagg tgtacttaca
     2581 caaaccttac gcgccgccgc agcccaccag cctggtatta ttagtgatat tggcatcggg
     2641 acatttgtcg atccacgcca gcaaggcggc aaactgaatg aagtcacgaa agaagacctg
     2701 attaaactgg tcgagtttga taacaaagaa tatctctatt acaaagcgat tgcgccagat
     2761 atcgccttca ttcgcgctac cacctgcgac agtgaaggct acgccacttt tgaagatgag
     2821 gtgatgtatc tcgacgcatt ggttattgcc caggcggtgc acaataacgg cggtattgtg
     2881 atgatgcagg tgcagaaaat ggttaagaaa gccacgctgc atcctaaatc tgtccgtatt
     2941 ccgggttatc tggtggatat tgtggtggtc gatccggatc aaagccaact gtatggcggt
     3001 gcgccggtta accgctttat ttctggtgac ttcacccttg atgacagcac caaacttagc
     3061 ctgcccctaa accaacgtaa attagttgcg aggcgtgcat tattcgaaat gcgtaaaggc
     3121 gcggtgggga atgtcggcgt cgatattgct gacggtattg gcctggtcgc ccgggaagaa
     3181 ggttgtgctg atgactttat tctgacggta gaaacaggtc cgattggcgg aattacttca
     3241 caggggatcg cctttggcgc gaacgtgaat acccgtgcca ttctggatat gacgtcccag
     3301 tttgattttt atcacggtgg tggtctggat gtttgttatt tgagttttgc tgaagtcgac
     3361 cagcacggta acgtcggcgt gcataaattc aatggcaaaa tcatgggtac cggtggattt
     3421 attgatatca gtgccacctc gaagaaaatt attttctgcg gcacgttaac cgcgggcagt
     3481 ttaaaaacag aaattgccga tggcaaatta aatatcgtcc aggaaggacg ggtgaagaaa
     3541 tttattcagg aactaccgga aattactttt agcggaaaaa tcgcgctcga acgggaactg
     3601 gatgttcgtt acatcaccga acgtgctgta ttcacgctga aagaagacgg cctgcattta
     3661 atcgaaatcg cccctggcgt cgatttacaa aaagatattc tcgacaaaat ggatttcacc
     3721 ccagtgattt cgccagaact caaactgatg gacgaaagat tatttatcga tgcggcgatg
     3781 ggttttgtcc tgcctgaagc ggctcattaa caggagtatc acgatggatt tttctttaac
     3841 tgaagaacaa gaactgctgc tggccagtat tcgcgaactg attacgacta actttgcgga
     3901 agagtatttc cgcacctgcg atcaaaacgg gacatatccg cgtgagttta tgcgggcgct
     3961 ggcggataac ggcatttcta tgcttggcgt gccggaagag ttcggtggca tccctgcgga
     4021 ttacgtcacc cagatgctgg cgctgatgga agtgtcaaaa tgcggtgctc cggcattttt
     4081 gattaccaac ggtcaatgta ttcacagtat gcgccgtttc ggttctgcag agcagctacg
     4141 taaaacggca gagagcaccc tggaaacggg tgatcccgcc tatgccctgg cgttgacgga
     4201 gccaggcgca ggctcagaca acaacagtgc cactaccact tacacgcgta aaaacggcaa
     4261 ggtttacatc aacggacaga aaacctttat taccggtgcg aaagagtacc cgtatatgct
     4321 ggtgttggcg cgcgatccgc aaccgaaaga tcccaaaaaa gccttcaccc tgtggtgggt
     4381 cgactccagt aagcccggca ttaagattaa cccgctgcat aaaatcggct ggcatatgct
     4441 cagcacctgc gaagtctatc tcgacaacgt ggaggttgaa gagagcgaca tggtgggcga
     4501 agaaggaatg ggtttcctca atgtgatgta caactttgag atggagcgcc tgatcaacgc
     4561 cgcgcgcagc accggctttg ccgaatgcgc ctttgaagat gccgcccgct atgccaacca
     4621 acgtatcgct tttggtaagc ccattggtca taaccagatg atccaggaaa aactggcgct
     4681 gatggcgatt aagatcgaca acatgcgcaa catggtgctg aaagtggcat ggcaagccga
     4741 tcagcatcag tcactgcgca ccagcgcggc gctggcaaaa ctgtattgcg cacgtaccgc
     4801 aatggaagtc attgatgatg cgattcaaat catgggcggt ctgggctata ccgatgaagc
     4861 gcgcgtctcc cgcttctggc gtgatgtccg ttgtgaacgt atcggcggag gtacagacga
     4921 aattatgatt tacgtagcag gtcggcagat cctgaaagac tatcagaaca aataatctgc
     4981 aggcggcgca gcttcttaac aaactgcgcc gccagattta tccaacaaga cttaccggtt
     5041 gaggaaattc agataggatt tcttgttccg caaaacagtt tttaaattgt ctacggtaat
     5101 cgctgggcga acaaccgaca tggcgcaaaa acagtttggc aaagtgatcg acattttcat
     5161 aacccacacg ccaggagatc tctgcctgtg ataattcagt attagtgagt gaccattttg
     5221 cttccgtcat acgccgttga ataacatagt taatagggga aatacgatac tctttggtaa
     5281 attcatggca aatataactg acgctggcac gaaatttttt cgataactgt tctaaagtga
     5341 ttttttcgcg ataattatta ttcagataga aaagaatatc ttttatcaga acatcttttt
     5401 taatataccc ctgctccgaa cgataagcat ttttaaaatt ttcgtagtaa agaatggcta
     5461 acgtataggc aaatgcatcc cataacgaag atgtttggct atttttactt tgcggcaaaa
     5521 tcacacttag ctcattaaat aaggttttta tgacttcttt tccctgcccc gcggcaatta
     5581 ccggacaaga atgcggttgc agtagctgat tttcctcagc cccctgaaac tgaaagccgt
     5641 acagcgcaca ggtacacgtc gttgccggat cgttaacgtc agaggccacc gcatgcagcc
     5701 tgccgcgttc tatcaccaca atgtcatccg catgtgcgac atataacgaa gaatcgatgg
     5761 taaaccttgc aacccctttc ttgacgtaaa tcaactcggt ttcattgtca tgaacgtgat
     5821 gtccggactc ccattttgga tcatcgctaa atgcaaaacg tgaaagccgt ggcgttttac
     5881 cggcgacaaa cagcgtttca ctggcgttat caaaacagcg ttgatacatg acaacctccc
     5941 tattccatga gcaagcaaaa acaatatatg ccggataaaa tacggcgtgt attgcggtta
     6001 tacaaccgcg tttagcgaga gctaaacaag attatttaca ctgaatgcaa gattgtacgg
     6061 tcatggaata actatattgc cgcaaattgc acttttgttt tagcgatcgc attttttttg
     6121 caagattgtt ggcaaggaaa acagcttgct ccgtcgaaaa ccccgcaccg ctatcgcaca
     6181 ctattttcag gccattttta ccttccatcg gagatggttc cgtatgcgac tcacaggaga
     6241 aatcatgaaa ataataacct gctttaagct ggtgcctgaa gaacaggaca ttgttgtcac
     6301 tccagaatac accctgaatt tcgacaatgc cgacgccaaa atcagccagt tcgatctcaa
     6361 tgccattgaa gctgcaagcc agctcgcaac agatgacgat gagatagccg cgctgaccgt
     6421 tggcggctta ttgttgcaga actcgaaagt gcgcaaagat gtgctatccc gcgggccgca
     6481 cagcctgtat ttggtgcagg atgcgcaact tgaacatgca ctgcctctcg ataccgcaaa
     6541 agcgctggcg gcagcaattg aaaagatcgg cttcgattta ctgatctttg gtgaaggttc
     6601 cggcgacctt tatgcccagc aggttggctt gctggtcgga gaaattctgc aacttccggt
     6661 gattaatgca gtgagtgcta ttcagcgtca gggcaataca ctggtgattg aacgcacgct
     6721 tgaagatgat gttgaagtta ttgaactctc tgttccagcc gtgctctgcg tcacctccga
     6781 tattaacgtg ccacgcattc cttcgatgaa agccattctc ggcgcgggta aaaaaccggt
     6841 aaatcagtgg caggcaagtg atattgactg gagccagagc gcgccacttg ctgaactggt
     6901 cggcattcgc gtaccgccgc aaacagaacg taagcacatc attatcgata acgattcgcc
     6961 ggaggccatt accgagctgg cggaacatct gaagaaagcc ctgaactgaa gcctacggag
     7021 aagaaacgat gagtcaatta aacagcgtct gggtctttag cgataatcct gaacgttatg
     7081 ctgaactgtt tggcggcgct cagcaatggg gccaacaggt gtatgccatt gtacaaaata
     7141 ccgaccaggc gcaggcagtt atgccttatg gtccaaaatg tatttatgtt cttgagcaaa
     7201 acgacgcgct gcaacgcact gaaaattacg ccgaaagcat tgctgccccg ctgaaagata
     7261 aacaccccgc tatgttgctg ttggccgcga cgaaacgtgg taaagctctg gcagcacggt
     7321 taagtgtgca actgaatgcg gcgctggtga acgatgccac ggcggtggat attgtcgatg
     7381 gtcacatttg cgccgaacac cggatgtatg gcgggttagc gttcgctcag gaaaagatca
     7441 acagcccgct ggcgatcatt acccttgcac ccggtgttca ggaaccgtgc accagtgata
     7501 cctctcatca gtgcccgaca gaaacggtac cttatgttgc tccgcgtcat gaaattctct
     7561 gtcgcgaacg ccgtgcgaaa gccgcaagca gcgtggacct gagcaaagca aaacgtgtgg
     7621 ttggcgtcgg tcatggtctg gcggcgcagg atgacctgaa aatggtccac gaactggcgg
     7681 cggtgctgaa tgctgaagtc ggctgttcac gtccaattgc cgaaggcgag aactggatgg
     7741 agcgtgaacg ttatatcggt gtctccggcg tgttgctgaa atccgatctc tacctgacgc
     7801 tggggatctc cgggcagatc cagcatatgg ttggcggcaa cggcgcaaaa gtgattgtcg
     7861 ccatcaataa agataaaaat gcgccaatct tcaattatgc cgactacggc ctggtgggcg
     7921 atatctacaa agtcgtccct gccctgatta gccagttgag ccgctaattc ccctttcaac
     7981 cacatctccc gctgtaaacg cagcgggaag ggagcataac gcatgtcgga tgacaaattt
     8041 gatgccattg tggtcggtgc ggacgttgct ggtagcgttg ccgcactggt catggcgcga
     8101 gccggactgg atgtcctggt gatagaacgc ggcgacagtg ccggatgtaa aaacatgacc
     8161 ggcgggcgtc tttatgccca cacacttgaa gcaatcattc caggctttgc agtatcagcg
     8221 ccggtagaac gcaaggtcac acgcgagaaa atctccttct taaccgaaga aagcgccgtt
     8281 accctcgatt ttcaccgcga gcaaccagat gttccgcaac acgcatctta taccgtattg
     8341 cgtaatcgtc tggacccgtg gttgatggaa caagccgagc aggcgggcgc acagtttatc
     8401 ccgggcgttc gcgtcgatgc gttggttcgt gaaggaaaca aggtcactgg cgtgcaggcc
     8461 ggggatgata ttctccaagc gaatgtggtg gttctagctg atggcgtaaa ctcgatgctt
     8521 ggccgctcgc tgggaatggt tcccgcttcc gatccgcatc attacgctgt tggtgttaaa
     8581 gaggttattg gcctcacacc agaacagatc aacgatcgct ttaatattac gggcgaggaa
     8641 ggtgccgcct ggctgtttgc cggttcccct tctgacggcc tgatgggcgg gggatttctc
     8701 tataccaaca aggattccat atccttgggg ctggtttgtg gattgggtga tatcgcccat
     8761 gcgcaaaaaa gcgtgccgca aatgctggaa gattttaaac aacaccccgc cattcgccca
     8821 ctaattagcg gcggcaaact gcttgaatat tccgcgcata tggtgccaga aggcggtctg
     8881 gcaatggtga cgcagatggt taacgatggc gtgatgatcg ttggtgacgc cgcaggcttc
     8941 tgcctgaatt tgggttttac agttcgtggc atggatttag ccattgcatc ggctcaggct
     9001 gccgccacaa cggtgatcgc cgccaaagaa cgcgaggatt tctccgccag cagtctggcg
     9061 caatacaaac gtgagctgga acaaagctgc gtcatgcgcg atatgcagca tttccgcaag
     9121 atcccggcgc tgatggaaaa cccgcgcctg tttagccaat acccacgaat ggtcgccgac
     9181 atcatgaacg agatgttcac cattgacggc aaaccaaacc agccggtacg caaaatgatc
     9241 atgggacacg cgaagaaaat tgggctgatc aacttgctga aagatggcat taagggagca
     9301 accgcgctat gagccagaac gctacggtta acgtcgacat caaattaggc gtcaataaat
     9361 tccatgttga tgagggccac ccgcatatca ttctggcggc aaatcccgat atcaatgaat
     9421 tccgtaaatt aatgaaagct tgccctgccg gactttataa gcaggatgac gccggcaaca
     9481 ttcatttcga ttccgccggt tgtctggagt gcggcacctg tcgggtgctg tgcggcaaca
     9541 ctattctcga acagtggcaa tatcccgcag gcaccttcgg tattgatttt cgctacggct
     9601 aatcatgcat cccacaggcc cgcatctcgg gcctgatgtt ctgtttcgag agtccaaaat
     9661 gaaagtgaca ttaacgttca acgaacaacg tcgtgcggcg tatcgtcagc aagggttatg
     9721 gggcgatgct tcactggccg attactggca gcagaccgct cgtgcgatgc cagacaaaat
     9781 tgccgtggtc gacaatcatg gtgcaacgta cacctatagc gcgctcgatc acgccgcgag
     9841 ctgtctggca aactggatgt tagcgaaggg tattgaatca ggcgatcgca tcgcatttca
     9901 actgcctggc tggtgtgaat ttaccgttat ctatcttgcc tgcctgaaaa tcggtgcggt
     9961 ttccgtgccg ctgttgcctt cctggcggga agcagaactg gtgtcggtgc tcaataagtg
    10021 tcaggcaaaa atgttctttg caccgacgtt gtttaaacaa acacgtccgg tagatttaat
    10081 cctgccgctg caaaatcagc ttccacaact acaacaaatt gtcggcgtgg acaaactggc
    10141 tcccgccacc tcttccctct cattaagtcc gattatcgcc gacaatacct cactgaccac
    10201 ggcgataacg acccacggcg atgaattagc tgcggtgctg tttacctccg gaaccgaggg
    10261 tctgccaaag ggcgtgatgc taacgcataa caatattctc gccagtgagc gggcttattg
    10321 cgcgcgactg aatctgacct ggcaggatgt ctttatgatg cctgcgccac ttggtcacgc
    10381 aacgggcttt ctgcatggcg taacggcacc attcttaatt ggcgctcgca gcgtgttgtt
    10441 agatattttc actcctgatg cgtgtctcgc gctgcttgag cagcagcgtt gcacctgtat
    10501 gctaggcgca acgccgtttg tctatgatct tttgaatgta ctagagaaac aacccgcgga
    10561 cctttcagcg ctgcgtttct ttctttgcgg cggtaccaca atccccaaaa aagtggcacg
    10621 tgaatgccag cagcgcggca ttaaattatt aagtgtttat ggttccacag aaagttcgcc
    10681 gcatgcggtg gtgaatctcg atgatccttt gtcgcgcttt atgcacaccg atggttacgc
    10741 tgccgcaggt gtagagatta aagtggtcga tgacgcacgc aagaccttac cgccaggttg
    10801 cgaaggtgaa gaagcctcgc gtggccccaa tgtttttatg gggtattttg atgaacctga
    10861 attaaccgcc cgtgcgctgg acgaagaagg ctggtattgc agcggcgatc tctgccgtat
    10921 ggatgaggct ggctatataa aaattaccgg acgcaaaaaa gatattattg tccgcggcgg
    10981 cgaaaatatt agcagccgtg aagtggaaga tattttattg cagcatccta aaattcacga
    11041 tgcctgtgtg gttgcaatgc ccgatgaacg tttaggtgaa cgatcatgcg cttatgtcgt
    11101 gctgaaagcg ccgcatcatt cattatcgct ggaagaggtg gtggcttttt ttagccgtaa
    11161 acgggtcgca aaatataaat atcctgaaca tatcgtggta atcgaaaaac taccgcgcac
    11221 tgcctcaggt aaaatacaaa agtttttgtt aagaaaagat attatgcggc gattaacgca
    11281 ggatgtctgt gaagagattg aataagtttc atcttcgggg atcacataaa cccggcgaca
    11341 aaacgccgcc gggtatttat tttatttctt cagttcagcc aggcttaacc aggtttgcac
    11401 cacggtgtcc ggattcagag acaggctatc gatcccctct tccatcaacc atgcggcaaa
    11461 atcttcgtgg tcggacggac cctgaccgca aatcccgaca tatttgccct gtttcttcgc
    11521 ggcacggata gccatcgaca gcaatgcttt caccgcatcg ttgcgctcat cgaacagttc
    11581 agacaccacg ccggagtcac gatccagacc gagcgccaac tgcgtcatgt cgtttgagcc
    11641 aattgagaag ccgtcgaaat attcgaggaa ctgctcggcc agcaaggcgt tggacgggat
    11701 ttcacacatc atgatgattt tcagcccgtt ctcaccacgc ttcagcccct gacgcgccag
    11761 ttcttcaacc accgctttcg cctggtctac ggtacgcacg aacgggatca tgatctcaac
    11821 gttggtcagc cccatgtcgt tgcgcacacg tttcactgct tcacactcca gcgcgaagca
    11881 gtcgcggaag ctgtcggaaa catagcggcc cgcgccacgg aagccgagca tcgggttctc
    11941 ttcatctggc tcgtaacgct caccaccgac caggttggca tattcgttcg atttaaaatc
    12001 agagagacgg acaatgacgc gcttcggata aaacgcggca cccagcgtcg cgatcccttc
    12061 agtcagacga ccaacgtaaa attcacgcgg agaatcaaaa cctttcatca tctcgcggat
    12121 ttcgttttgc aactgcggtt cctgatcgtc aaactcaagc agtgcgcgtg ggtggacgcc
    12181 aatcatacgg ttgatgataa attccagacg cgcaagtccc acgcctttgt tcggcagaca
    12241 ggcgaagtcg aaagctcgat ccgggttacc gacgttcatc atcactttca acggcagatc
    12301 cggcatggtt tctacgctgg agcttttcac gctaaattcc agcaactccg catagacgta
    12361 accggtatca ccttcggcac aagaaacagt gacgttctca ccgtctttca tccgttctgt
    12421 tgcatcacca cagcccacta ccgccggaat acccagttca cgagcgatga tcgccgcgtg
    12481 acaggtacga ccgccacggt tggtgacgat ggcagatgct ttcttcatga tcggttccca
    12541 gtccgggtcg gtcatgtcag tgaccagcac gtcaccaggt tcgatgcggt tcatttcgct
    12601 gatgtcatgg atgactttca ccggacccgc accgatgcga tgaccgatag cacggccttc
    12661 ggcgataatc ttaccctgtg aatgcagcgt ataacgctcc atgacctgac cgcgtgagcg
    12721 cacggtttcc ggacgcgcct gcacaatgaa cagtttgccg gtgtggccat ctttcgccca
    12781 ctcaatatcc atcgggcgac cgtagtgttt ctcaatttgt acggcctgtt ttgccagttc
    12841 ctgcacttct tcgttggtca gcgagaagat gtcacgctgt tcctgcggta cgtcttcgat
    12901 tttaacctgc ttgccgtgct cctgggtcgg cgcgtaaacc atgcggattt ttttcgaccc
    12961 catggtgcgg cgcacgatag ccgggcgatt cgccgccagt gtcggtttat gcacgtaaaa
    13021 ctcatccggg ttaaccgccc cctgcacgac catctcacca aggccccatg cggaagtgat
    13081 aaacaccacc tggtcaaagc cggattcggt atcaatggag aacatcacgc cagaagatgc
    13141 gaggtcggag cgcaccatcc gctgaacacc ggcggagagc gccacgccac ggtgatcgta
    13201 accctggtgc acacgataag agatggcgcg atcgttaaac agagaagcaa atacatgttt
    13261 cactgccacg agaacggcgt caaacccctg aacgttgagg aaggtttcct gctgaccggc
    13321 aaaggaagcg tccggcatat cttctgcggt ggcggaggag cgcaccgcaa aagaggcgtt
    13381 ttcgtcatcg gcggaaagct gagcataggc ttcgcggatg gcgttttcca gctcagcctg
    13441 gaagggagtg tcgataatcc actggcggat ttgcgcgccc gctttcgcaa gctgagtaac
    13501 atcgtcaata tccgttttat ccagcagttc ataaatgcgc tggtttacgc cgctttggtc
    13561 cagaaactgg ttaaacgcgt cggcggttgt ggcgaaacca ttcggaacgg aaacgcccat
    13621 tccggaaagg ttagtaatca tttcacccag ggaggcattt ttgcccccaa ccctgtctac
    13681 atcattcatg ccgagttggt tgtaccaaag caccagcggt gacgagccat tgttggacat
    13741 cgaacaatcc ttttgtgata aatgaacggt ttgagaaaca catttctgcg catttatctt
    13801 tgcatattta accggatgaa aaaaacggtg aatcgttcaa gcaaatatat ttttttactt
    13861 tttaagactg atccc
//
LOCUS       DAJVUN010000109        13654 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.109, whole genome shotgun sequence.
ACCESSION   DAJVUN010000109 DAJVUN010000000
VERSION     DAJVUN010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13654
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.109"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..222)
                     /locus_tag="OQQ76_002682"
     CDS             complement(<1..222)
                     /locus_tag="OQQ76_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001009620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969130.1"
                     /translation="MNFKEKLEEHFKQFEASPVLFVGSGVSRRYLGVPCWQDLLKHFA
                     EAIEENHIKLKTKSNGDLPEYAQLLVSAYA"
     gene            complement(613..1881)
                     /locus_tag="OQQ76_002683"
     CDS             complement(613..1881)
                     /locus_tag="OQQ76_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1969131.1"
                     /translation="MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRF
                     GGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKV
                     AREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLE
                     VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLQKID
                     EYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRG
                     AKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENTVNSALRVMGYD
                     TKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLM
                     LQWWADFLDANREKGITPFDYAKINRGNGE"
     gene            complement(2082..2166)
                     /locus_tag="OQQ76_002684"
     tRNA            complement(2082..2166)
                     /locus_tag="OQQ76_002684"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2130..2132),aa:Leu,seq:caa)
     gene            2362..3381
                     /gene="ahr"
                     /locus_tag="OQQ76_002685"
     CDS             2362..3381
                     /gene="ahr"
                     /locus_tag="OQQ76_002685"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent aldehyde reductase Ahr"
                     /protein_id="HCS1969132.1"
                     /translation="MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSD
                     LSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDAC
                     ISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKP
                     LLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVN
                     SRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLI
                     AGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVV
                     LKADF"
     gene            3511..5013
                     /locus_tag="OQQ76_002686"
     CDS             3511..5013
                     /locus_tag="OQQ76_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HCS1969133.1"
                     /translation="MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLA
                     ESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFG
                     EKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQY
                     IGDNAKSFQNQYGNISSASVGAIQRGLLSLEKQGAAHFFGEPMLDIKDWMRTDTNGKG
                     VINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAP
                     QVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAV
                     KAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTE
                     DELNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASTKQQNNPPAKGKAVAVDDGILG
                     GLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR"
     gene            complement(5174..6256)
                     /gene="lptG"
                     /locus_tag="OQQ76_002687"
     CDS             complement(5174..6256)
                     /gene="lptG"
                     /locus_tag="OQQ76_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313266.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HCS1969134.1"
                     /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ
                     GSYDALGAGMYTLLSVPKDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV
                     ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF
                     VYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPK
                     QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW
                     SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG
                     IPPIIGALLPSASFFLISLWLLMRKS"
     gene            complement(6256..7356)
                     /gene="lptF"
                     /locus_tag="OQQ76_002688"
     CDS             complement(6256..7356)
                     /gene="lptF"
                     /locus_tag="OQQ76_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HCS1969135.1"
                     /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP
                     ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA
                     MILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
                     IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAL
                     LRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTV
                     FVMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV
                     NLIYLALAIVLNLWDTVPVRCLRASFSRKGAV"
     gene            7623..9134
                     /gene="pepA"
                     /locus_tag="OQQ76_002689"
     CDS             7623..9134
                     /gene="pepA"
                     /locus_tag="OQQ76_002689"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HCS1969136.1"
                     /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS
                     ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND
                     TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN
                     VPTRRELTSGERAILHGLAIAAAIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV
                     ITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDS
                     GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP
                     GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI
                     TGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA
                     GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE"
     gene            9294..9737
                     /gene="holC"
                     /locus_tag="OQQ76_002690"
     CDS             9294..9737
                     /gene="holC"
                     /locus_tag="OQQ76_002690"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004098129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HCS1969137.1"
                     /translation="MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACE
                     DEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTS
                     FADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK"
     gene            9737..12592
                     /gene="valS"
                     /locus_tag="OQQ76_002691"
     CDS             9737..12592
                     /gene="valS"
                     /locus_tag="OQQ76_002691"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000416368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HCS1969138.1"
                     /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNV
                     TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR
                     HDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL
                     YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV
                     VATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCV
                     KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQK
                     LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP
                     AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRN
                     EEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG
                     FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL
                     DMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALAST
                     GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFN
                     QTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLV
                     TVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTE
                     WLKQAIVAVRNIRAEMNIAPGKPLVLLLRGCSADAERRVNENRGFLQTLARLESITVL
                     PADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEG
                     FVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL"
     gene            complement(12648..>13654)
                     /locus_tag="OQQ76_002692"
     CDS             complement(12648..>13654)
                     /locus_tag="OQQ76_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS1969139.1"
                     /translation="FSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLVGCVLTLSLL
                     VLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTK
                     MLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTA
                     YCIKYAILAFLALLPFLAVAGYIIFEQILNAYDSSVYANDDIENLQQFMEMQRKMIIA
                     QLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGI
                     TGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
                     "
BASE COUNT         3466 a         3498 c         3552 g         3138 t
ORIGIN      
        1 agcatatgca gacaccaata attgtgcata ttcgggtaag tcaccattag attttgtttt
       61 taattttata tgattttcct caattgcctc agcaaaatgc ttcaaaaggt cttgccaaca
      121 tggcacacca agataacgac gagacacacc ggagccgaca aataacactg gggatgcttc
      181 gaactgctta aaatgctctt cgagtttttc cttaaaattc atacggatac tctctttaaa
      241 agaaatcaag cccctttata ctgattacat taagatattg cggcttacac caccagtaaa
      301 ttggtcaatt ttacgtaaga aatttaatta tttagattca attaattatt agattaacta
      361 attgactatc actcctgatg tagccgaatt gctgtacctt tgttacgatg tagggctcaa
      421 tcaagggtcc actccccttt tataagtaat catgacttta aatttaggct taggtggagc
      481 attactgccg attaggttca ataaaaaggc ttaccttagt gaaaactcgg ctatttggca
      541 ctgctgacca attcctcgtt tgaataagtc agcagctttc aatttagagg cgaatgtgcg
      601 cttttagata actcactcgc cattaccccg attgatcttc gcatagtcaa acggcgtaat
      661 ccccttctcc cggttcgcat ccagaaaatc agcccaccac tgcaacatca gcttgcgctc
      721 atccagatgt tccgctttat ggatatacgc cgccctcacc gaattgcgtt ccatatggct
      781 catctgcctt tccaccgcat ccttcgacca taaccctgac tcaatcaatg agctacaggc
      841 catagtgcgg aagccgtggc cgcaaacctc aaccttggtg tcatagccca tcacccgcaa
      901 tgcactgttc accgtgtttt cactcatggg cttactcgga tcgtgatcgc caataaaaat
      961 cagctcatgt tcgccacaga actgttttat ctgcttcagg atcgctagcg cctgctttga
     1021 aagcggcacc agatgaggtg tacgcatctt tgctcctcgc tgagaatgtt tcacaccggg
     1081 aataggttct cgctcaggcg ggatggtcca cattgacgtt tcaaaatcga tttctgacca
     1141 gcgagcaaaa cgcagctcac tggatcgaat aaaaataagc agggtaagtt cggttgccca
     1201 gcgggttagt ggcctgccgg tgtattcatc gattttctgg agtaattccg ggatacgctt
     1261 taactccagc gccggacgat gctgtcgatt acaggaagct accgcccccg ccatctcttg
     1321 cgccggattg taatcaatta acccgctttg cactgcataa cgcatgatgg ccgtggtgcg
     1381 ctgttgaagg cgggaagcca cttcaagacg tccggatttc tccacggctt taataggaat
     1441 taacagatcg cgggtgccca gttcagcaat attgtgggaa ccaattgccg ggaagatatt
     1501 gtcctccagg ctctttttta cacgattagc atgctcttcc gaccattttt ggttggttac
     1561 gagccactct ctggcaacct tctcgaaagt aataatctct ttcgcctgct cttctttcac
     1621 agcacgctta tgctcacgag gatcgatacc agcagctacc agctttctgg cctcttccct
     1681 tttcttccgc gcatccgcca gcgaaacatc cgggtaaacg ccgaacgcca tcaaatgttg
     1741 tttaccgcca aaacggaaac gaaatcgcca atactttgaa ccgccaggtt ttacaagtaa
     1801 ggacatgccg tcgccgtcaa caagtgaata ctctttctcc tcaggtttcg cagagcgaac
     1861 tttagtatcc gttagggcca taatggtctt ccttccattg gtatctcgtg agtatacaag
     1921 caatatcgaa tcggcaaata tactcattag tatactcaca agcctgttga tgtgggttga
     1981 gtcaggttga cttcagttga ggggaaaagc tggaaaagcc ttgtgtagcg cggatttcag
     2041 gcataaaaaa agacctcagt tgaggtctat ttacatactt ttggtgccga aggccggact
     2101 cgaaccggca cgtatttcta cggttgattt tgaatcaact gcgtctaccg atttcgccac
     2161 ttcggcactg aagaggtatg cggaaaacgt tgtggattat acctgtcgca cgccaccatg
     2221 caagcgccag cttgctcgca cctcgctaag tgctgaaatt ttcagcattg cacacagcga
     2281 tgtgtaacct ttgtcacact ccaggcaccc cgccctgcca tgctctacac ttcccaaaca
     2341 acaccagaga aggaccaaaa aatgtcgatg ataaaaagct atgccgcaaa agaagcgggc
     2401 ggcgaactgg aagtttatga gtacgatccc ggtgagctga ggccacaaga tgttgaagtg
     2461 caggtggatt attgcgggat ctgccattcc gatctatcga tgatcgacaa tgaatgggga
     2521 ttttcacaat atccgctggt tgccgggcat gaggtgattg ggcgcgtggt ggcactcggg
     2581 agcgccgcgc aggataaagg tttgcaggtc ggtcagcgtg tcgggattgg ctggacggcg
     2641 cgtagctgtg gtcactgcga cgcctgtatt agcggtaatc agatcaactg cgagcaaggt
     2701 gcggtgccga cgattatgaa tcgcggtggc tttgccgaga agttgcgtgc ggactggcaa
     2761 tgggtgattc cactgccaga aaatattgat atcgagtccg ccgggccgct gttgtgcggc
     2821 ggtatcacgg tctttaaacc actgttgatg caccatatca ctgctaccag ccgcgttggg
     2881 gtaattggta ttggcgggct ggggcatatc gctataaaac ttctgcacgc aatgggatgc
     2941 gaggtgacgg cctttagttc taatccggcg aaagagcagg aagtactggc gatgggtgcc
     3001 gataaagtgg tgaatagccg cgatccgcag gcactgaaag ccctgtcggg gcagtttgat
     3061 ctcattatca atactgtgaa cgtcagcctc gactggcagc cttattttga ggcgctgacc
     3121 tatggcggta atttccatac ggtcggtgcg gttctcacgc cgctgtctgt tccggccttt
     3181 acgttaattg cgggcgaccg cagcatctct ggttctgcta ccggcacgcc ttatgagctg
     3241 cgaaagctga tgcgctttgc cgcccgtagc aaggttgcgc cgaccaccga actgttcccg
     3301 atgtcgaaaa ttaacgatgc catcaagcat gtgcgcgacg gtaaggcgcg ttaccgcgtg
     3361 gttctgaaag ccgacttctg atccctttgc cgggtgcctg tcgcccggca cttaaatctc
     3421 tttggaaggc gtctcgcaat ctgctgaatt tagcggtgaa gagtgcgcag ccgttgccta
     3481 tactccaggc aggaaactgg aggaaatctc atgagcgaac ccctattaat tgcccgcacg
     3541 ccggacacag aacttttttt actgccggga atggctaacc gtcacgggct gattactggc
     3601 gcaacgggga cgggtaaaac cgttacgctg caaaaactgg cagagtcatt gtcggaaatc
     3661 ggcgtgccgg tgtttatggc tgatgtgaaa ggcgatctga ccggtatcgc gcaggcagga
     3721 acggcgtcgg aaaaactgct cacaaggctt aaaaatatcg gcgtcaatga ctggcaaccg
     3781 catgctaatc cggtggtggt gtgggatatc tttggcgaga aaggccatcc ggtgcgggcg
     3841 acggtttcag acctggggcc gctgttgctg gcgcggctgt tgaatctcaa cgatgtgcaa
     3901 tctggcgtgc tgaatatcat cttccgtatt gctgacgatc agggattgtt gctgctcgac
     3961 tttaaagatc tgcgggcgat tacccagtac atcggcgata acgccaaatc tttccagaat
     4021 cagtacggta atatcagtag cgcatcggtt ggtgccatcc agcgcggttt actgtcgctg
     4081 gaaaagcaag gtgcggcgca tttctttggc gagccgatgc tggatatcaa agactggatg
     4141 cgcaccgata ccaacggtaa aggcgttatc aatatcctca gcgccgagaa gctttatcag
     4201 atgccgaaac tgtacgccgc cagcctgctg tggatgcttt cagagttgta tgaacaattg
     4261 ccggaagcgg gcgatctgga gaaaccaaaa ctggtgtttt tcttcgacga ggcacatctg
     4321 ctgtttaacg atgcaccgca ggtactgctg gataagattg agcaggtaat aaggcttatt
     4381 cgctcaaaag gcgtgggcgt ctggttcgtt tcgcaaaacc cgtctgatat tccggataat
     4441 gtgctcgggc agctcggtaa tcgcgttcaa cacgctttgc gggcttttac gcccaaagat
     4501 cagaaagcgg taaaagctgc ggcgcaaacc atgcgggcca atccggcgtt tgataccgaa
     4561 aaggcaatcc aggaactggg gaccggcgag gcgttaatct cgtttctcga tgcaaaagga
     4621 agtccttctg tggtggaacg ggcgatggtg attgcgcctt gttcgcggat gggaccggtg
     4681 acggaagatg agctcaatgg cttgattaac cactccccgg tgtatggcaa gtacgaggat
     4741 gacgtggacc gggaatccgc ctatgagatg ttgcaaaaag gctttcaggc cagtaccaag
     4801 cagcaaaata atcctcccgc gaaagggaaa gcggtggcgg tggatgacgg tattcttggt
     4861 ggattgaagg atattttgtt tggcactacc ggaccacgcg gcgggaagaa agatggtgtg
     4921 gtgcaaacaa tggcgaaaag cgccgcccgc caggtgacga atcagattgt acgtgggatg
     4981 ttggggagtt tgctgggggg aagaagaagg taagtcaggc gcgatttgtc tttgcctgat
     5041 gcgacgctgg cgcgtcttat catgcctaca ccactgcaat atattggatt ttcatgattt
     5101 ttcaggcatg aacgaagcac actttgctaa caataataaa gggagctttc gctcccttta
     5161 ttcgttcatt cggttacgat tttctcatta acagccacag gctgattaag aagaagctgg
     5221 cgcttggcaa cagtgcgccg atgatcggcg ggatgccata aaccaacgtc agcgggccga
     5281 agatctggtc cagtacgtag aagacaaaac cgaagctgat accggtgacc acacgcacgc
     5341 ccatcggtac gctacgcagt gggccaaaga tgaacgacag cgccatcagc atcatcaccg
     5401 ccacggatag cggctggaag attttgctcc acatattgag ctgataacgt ccggcatcct
     5461 gaccgctcga cttcagatac ttcacgtagt tgtgcaaacc gctgattgag agtgcatccg
     5521 ggtccagcgc caccacgccc agtttgtccg gcgtgaggtt ggttttccag gtgccgctca
     5581 ccgtctgcga accggtgatc tgtttcggat tggtcagatc agattcatca acctgcgaca
     5641 gacgccagac tttatgttcc gggtcaaact tcgcagtagc ggcatagcgt acggattgca
     5701 gacgacgatt ctcgttaaag gcataaatac tgatgccacc taactcttcg tcacctttaa
     5761 cccgctcaat gtaaacgaag ttgttgccat ctttcgccca taagccttgc tgggtagaga
     5821 gcaacgagcc gccgtacatc gcctgcgcac ggtagttacg cgccatctgc tcgccctgcg
     5881 gcgcgaccca ttcaccaatc gccatcgtca gcaagaccag cggaatggcg gttttcatca
     5941 ccgacagcgc aacctgcata cgggtgaaac cagaagcctg catcaccacc agttcgctgc
     6001 gctgcgccag catcccaaga ccaagcaacg ccccaagcag agccgccatc gggaagaatg
     6061 tttgcacatc tttcggcacg ctcagcaagg tatacattcc tgcgcctaac gcgtcgtaac
     6121 tcccctgccc ggcttttttc agctgatcga caaatttgat aatgcccgac agcgacacca
     6181 gcatgaacag cgtcatcatg atggtggtga aaatagtttt accgatatag cggtcaagta
     6241 cgccaaaagg ttgcatcaca ccgctccttt acgcgaaaaa ctggcgcgca ggcagcggac
     6301 cggcacggtg tcccaaaggt tgagaacaat cgccaaagcc agataaatca ggttaacggt
     6361 ccacatccac agcgtcgggt ccagcttacc tttaccgccg ttcgatttca gggaggtctg
     6421 gatcaggaag aaaagtagat acagcagcat ggctggcagc atcgatagta cgcgtccctg
     6481 acgcgggtta accacgctca gcggtacgac cataagtgcc atcacaaaca cggtgaatac
     6541 caacgtgata cgccagttca gttctgcgcg ggcacgatcg gtgtcagtgt tccacaatgt
     6601 acgcatgtcc atctggtcgg tatcgttcgg gtcgagcgct accgcctggt gaccaatgat
     6661 cgcctgataa tcctggaagt ccgtaatgcg gaaatcacgt aacagtgcag tgccttcgaa
     6721 gcgcgttccc tggttgagag tgacgacctg ggagccgtcg cgcagctggg ttaaatgtcc
     6781 ggaatcggcc accaccacag aaggacgtgc attacctttt ggtcgaattt gcgcgaggaa
     6841 cacatctttg aaatcgctgc cgtcaacgct ttcgatgaac agcaccgagc tgccattagt
     6901 cgcttgctgg aattgccctt gcgccagcgc cgccatgcca gggttcgctt tcgcttctgc
     6961 taacacttca tcctgatgac gcgatgacca cggtcccgcc cacatcacgt taaccgccgc
     7021 gacgattgca gtgaataccg caaggatcat tgccgctttc accagaaccg ctttgctcag
     7081 gccgcaggca tgcattaccg taatttcact ttcggtatac agtttgccca gcgtcatcag
     7141 cagcccgagg aacaggctta atggcaggat aagctgcgcc atttccggca cgcccaaccc
     7201 gagaagggag agcaccagat tcgccggaat atcgccgtca accgctgcgc cgaggatcct
     7261 cactaacttt tgacagaaga agatcaaaag caagatgaag agtatcgcca gctggctttt
     7321 gagcgtctcc cgcaccagat atcttatgat tatcacttta aatacgcccg taaaaactcg
     7381 tcttttgcag gattttagct tgtttcatgg cttaaacgtc atttattctc ttgagtcgtc
     7441 gaaatcgtcg ctaagataat tatactcaac ggattcacct ctcagatttt gttctgacgt
     7501 gccaatgccg taataacgtt aagattaaca cgaagtcatc gcaacagcgg acatgagtta
     7561 cgaaagcttg caattctatc tgtagccacc gccgttgtct ttaagattca ggagcgtagt
     7621 gcatggagtt tagtgtaaaa agcggtagcc cggagaaaca gcggagtgcc tgcatcgtcg
     7681 tgggcgtctt cgaaccacgt cgcctttctc cgattgcaga acagctcgat aaaatcagcg
     7741 atgggtacat cagcgccctg ctacgtcggg gcgaactgga aggaaaaccg gggcagacat
     7801 tgttgctgca ccatgttccg aatgtacttt ccgagcgaat tctccttatt ggttgcggca
     7861 aagaacgtga gctggatgag cgtcagtaca agcaggttat tcagaaaacc attaataccc
     7921 tgaatgatac tggctcaatg gaagcggtct gctttctgac tgaactgcac gttaaaggcc
     7981 gtaacaacta ctggaaagtg cgtcaggctg tcgagacggc aaaagagacg ctctacagtt
     8041 tcgatcagct gaaaacgaac aagagcgaac cgcgtcgtcc gctgcgtaaa atggtgttca
     8101 acgtgccgac ccgccgtgaa ctgaccagcg gtgagcgcgc gatcctgcac ggtctggcga
     8161 ttgccgccgc gattaaagca gcaaaagatc tcggcaatat gccgccgaat atctgtaacg
     8221 ccgcttacct cgcttcacaa gcgcgccagc tggctgacag ctacagcaag aatgtcatca
     8281 cccgcgttat cggcgaacag cagatgaaag agctggggat gcattcctat ctggcggtcg
     8341 gtcagggttc gcaaaacgaa tcgctgatgt cggtgattga gtacaaaggc aacgcgtcgg
     8401 aagatgcacg cccaatcgtg ctggtgggta aaggtttaac cttcgactcc ggcggtatct
     8461 cgatcaagcc ttcagaaggc atggatgaga tgaagtacga tatgtgcggt gcggcagcgg
     8521 tttacggcgt gatgcggatg gtcgcggagc tacaactgcc gattaacgtt atcggcgtgt
     8581 tggcaggctg cgaaaacatg cctggcggac gagcctatcg tccgggcgat gtgttaacca
     8641 ccatgtccgg tcaaactgtt gaagtgctga ataccgacgc tgaaggccgc ctggtactgt
     8701 gcgacgtgtt aacttacgtt gagcgttttg agccggaagc ggtgattgac gtggcgacgc
     8761 tgaccggtgc ctgcgtgatc gcgctgggtc atcacattac cggtctgatg gcgaaccata
     8821 atccgctggc ccatgaactg attgccgcgt ctgaacaatc cggtgaccgc gcatggcgct
     8881 taccgctggg tgacgagtat caggaacagc tggagtccaa ttttgccgat atggcgaaca
     8941 ttggcggtcg tcctggtggg gcgattaccg caggttgctt cctgtcgcgc tttacccgta
     9001 agtacaactg ggcgcacctg gatatcgccg gaaccgcctg gcgttctggt aaagcaaaag
     9061 gcgccaccgg tcgtccggtg gcgttgctgg cacagttcct gttaaaccgc gctgggttta
     9121 acggcgaaga gtaattgcgt caggcaaggc tgttattgcc ggatgcggcg tgaacgcctt
     9181 atccgaccta cacagcactg aactcgtagg cctgataaga cacaacagcg tcgcatcagg
     9241 cgctgcggtg tatacctgat gcgtatttaa atccaccaca agaagcccca tatatgaaaa
     9301 acgcgacgtt ctaccttctg gacaatgaca ccaccgtcga tggcttaagc gccgttgagc
     9361 aactggtgtg tgaaattgcc gcagaacgtt ggcgcagcgg taagcgcgtg ctcatcgcct
     9421 gtgaagatga aaagcaggct taccggctgg atgaagccct gtgggcgcgt ccggcagaaa
     9481 gctttgttcc gcataattta gcgggagaag gaccgcgcgg cggtgcgccg gtggagatcg
     9541 cctggccgca aaaacgcagc agcagcccgc gcgatatatt gattagtctg cgaacaagct
     9601 ttgcagattt tgccaccgct ttcacagaag tggtagactt cgttccttat gaagattctc
     9661 tgaaacaact ggcgcgcgaa cgctataaag cctaccgcgt ggctggtttc aacctgaata
     9721 cggcaacctg gaaataatgg aaaagacata taacccacaa gatatcgaac agccgcttta
     9781 cgagcactgg gaaaagcagg gctactttaa gcctaatggc gatgaaagcc aggaaagttt
     9841 ctgcatcatg atcccgccgc cgaacgtcac tggcagtttg catatgggtc acgccttcca
     9901 gcaaaccatc atggatacca tgatccgcta tcagcgcatg cagggcaaaa acaccctgtg
     9961 gcaggtcggt actgaccacg ccgggatcgc tacccagatg gtcgttgagc gcaagattgc
    10021 cgcagaagaa ggtaaaaccc gtcacgacta cggccgcgaa gctttcatcg acaaaatttg
    10081 ggaatggaaa gcggaatccg gcggcacgat tacccgtcag atgcgccgtc tcggcaactc
    10141 cgtcgactgg gagcgtgaac gcttcacgat ggacgaaggc ctgtccaatg cggtgaaaga
    10201 agttttcgtt cgtctgtata aagaagacct gatttaccgt ggcaaacgcc tggtaaactg
    10261 ggatccgaaa ctgcgcaccg ctatctctga cctggaagtg gaaaaccgcg aatcgaaagg
    10321 ttcgatgtgg cacatccgct atccgctggc tgacggcgcg aaaaccgcag acggtaaaga
    10381 ttatctggtg gttgcgacta cccgtccgga aaccctgttg ggcgataccg gcgtggccgt
    10441 taacccggaa gatccgcgtt acaaagacct gattggcaaa tatgtcattc taccgctggt
    10501 taaccgtcgt attccgatcg ttggcgacga acacgccgac atggaaaaag gcaccggctg
    10561 cgtgaaaatc actccggcgc acgactttaa cgactatgaa gtgggtaaac gtcacgcgct
    10621 gccgatgatc aacatcctga cctttgacgg cgatatccgt gaaagcgccc aggtgttcga
    10681 taccaaaggt aacgaatctg acgtttattc cagcgaaatc ccggcagagt tccagaaact
    10741 ggagcgtttt gctgcacgta aagcagtcgt tgctgcggtt gacgcgctcg gcctgctgga
    10801 agaaattaaa ccgcacgacc tgaccgtgcc ttacggcgac cgtggcggcg tagttatcga
    10861 accgatgctc accgaccagt ggtacgtgcg tgccgatgta ctggcgaaac cggcggttga
    10921 ggcggttgag aacggcgaca ttcagttcgt accgaagcag tacgaaaaca tgtacttctc
    10981 ctggatgcgc gatattcagg actggtgtat ctctcgtcag ctgtggtggg gtcaccgtat
    11041 ccctgcatgg tacgacgaag caggtaacgt ttatgttggc cgcaacgaag aagaagtgcg
    11101 caaggaaaat aacctcggtg ccgacgttgc cctgcgtcag gacgaagacg ttctcgacac
    11161 ctggttctct tctgcgctgt ggaccttctc taccctaggc tggccggaaa acaccgacgc
    11221 actgcgccag ttccacccaa ccagcgtgat ggtatctggt ttcgacatca ttttcttctg
    11281 gattgcccgc atgatcatga tgaccatgca cttcatcaaa gatgaaaatg gcaaaccgca
    11341 ggtgccgttc cacaccgttt acatgaccgg cctgattcgt gacgacgaag gccagaagat
    11401 gtccaaatcc aagggtaacg ttattgaccc gctggatatg gttgacggta tttcgctgcc
    11461 ggaactgctg gagaaacgta ccggcaatat gatgcagccg cagctggcgg acaaaatccg
    11521 taagcgcacc gagaaacagt tcccgaacgg cattgagccg cacggcaccg atgccctgcg
    11581 cttcaccctg gcggcgctgg cttctaccgg tcgtgacatc aactgggata tgaaacgcct
    11641 ggaaggctac cgtaacttct gtaacaagct gtggaacgcc agccgctttg tgctgatgaa
    11701 cacggaaggt caggattgcg gcttcaacgg tggtgaaatg acgctgtcgc tggcggaccg
    11761 ctggattctg gcagagttca accagaccat caaagcgtac cgcgaggcgc tggacagctt
    11821 ccgcttcgat atcgctgcag gcattctgta tgagttcacc tggaaccagt tctgcgactg
    11881 gtatctggag ctgactaagc cggtaatgaa cggtggaacc gaagccgaac tgcgcggtac
    11941 tcgccatacg ctggtgactg tactggaagg tctgctgcgc ctcgcgcatc cgatcattcc
    12001 gttcatcacc gaaaccatct ggcagcgtgt gaaagtactt tgcggtatca ctgccgacac
    12061 catcatgctg cagccgttcc cgcagtacga tgcatctcag gttgatgaag ccgcactggc
    12121 tgacaccgag tggctgaaac aggcgatcgt tgcggtacgt aacatccgtg cagaaatgaa
    12181 catcgcgccg ggcaaaccgc tggtgctgct gctgcgtggt tgcagcgcgg atgcagaacg
    12241 tcgcgtaaat gaaaaccgtg gcttcctgca aaccctggcg cgtctggaaa gcatcaccgt
    12301 gctgcctgcc gatgacaaag gtccggtttc cgttacgaag atcatcgacg gcgcagagct
    12361 gctgatcccg atggctggcc tcatcaacaa agaagatgag ctggcgcgtc tggcgaaaga
    12421 agtggcgaag atcgaaggcg aaatcagccg tatcgagaac aagctggcga atgaaggctt
    12481 tgtcgcccgc gcaccggaag cggtcatcgc gaaagagcgt gagaagctgg aaggctatgc
    12541 agaagcgaaa gcgaagctga ttgaacagca ggctgttatc gccgcgctgt aatcaaaaca
    12601 cagtgatgaa aacgaaggcc ggagcatgct ccggcctttt ttatctctta cagaaatggt
    12661 aaagaaggca taattccccg tgaaatactg gctaagaagc ctttatctgg ttgttcttct
    12721 ttattgatta aaggaaggtc atccaaatcg cccagcaaat acgtattttt tgcctgccag
    12781 tcaatcatcc atattttcag cagtggataa gccagaccgc ccgtaatccc ggatatcact
    12841 accaacgcac acatgcgata aagcataccg tggtacgtta aagttgagcg aaaacgaata
    12901 cgcccatcat tcagtgacag gttgctcata aaatgatttc gcaacgacac cgttaaataa
    12961 ctggtgctaa cagcaatccc aaaataatag attaactgcg cgattatcat tttacgttgc
    13021 atttccataa attgctgtaa attctcaata tcatcatttg catacacaga actatcatac
    13081 gcatttaata tttgttcgaa gataatataa ccagcaacag cgagaaaagg taataaagct
    13141 aaaaatgcga ggatggcata ttttatacaa tacgcagtat ctaatttcac cttgaaacga
    13201 tgtataccga aactggtatt gctccagaga aaactcatta ccaggctata taaagtacca
    13261 ttaaaaatac caatggaaac aataccaact attgccatca gaaccacaga tataataaca
    13321 ctacttgaac tattggcatg tagcatcttt gtcgagataa agaaaacagt ccccatccca
    13381 atggccatta aaatcggcaa gaaaaaggtt acccaccaga accctttcat agagcaatta
    13441 aaactaaatc ttacgccgtt gagactagtc atcaaggcct gataacgcag tccttttgct
    13501 gccataaata taagcaaaac caacagtgac aaagtcaaaa cacagccaac aagcggcata
    13561 tctgctgaca ctgtcattaa gattgcgaaa tagaaaaaaa caaaaacaag acaactaaaa
    13621 aaaacattcc caccagtaat tccataagaa aatc
//
LOCUS       DAJVUN010000110        13595 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.110, whole genome shotgun sequence.
ACCESSION   DAJVUN010000110 DAJVUN010000000
VERSION     DAJVUN010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.110"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..1862)
                     /gene="speC"
                     /locus_tag="OQQ76_002693"
                     /pseudo
     CDS             complement(1..1862)
                     /gene="speC"
                     /locus_tag="OQQ76_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            2260..2967
                     /locus_tag="OQQ76_002694"
     CDS             2260..2967
                     /locus_tag="OQQ76_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HCS1969140.1"
                     /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRISMTSIFGLASLG
                     IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPTHESF
                     IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI
                     SIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP
                     ALLLAMPLSAAWTAWFA"
     gene            3073..3148
                     /locus_tag="OQQ76_002695"
     tRNA            3073..3148
                     /locus_tag="OQQ76_002695"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3106..3108,aa:Phe,seq:gaa)
     gene            complement(3297..3833)
                     /gene="yghD"
                     /locus_tag="OQQ76_002696"
     CDS             complement(3297..3833)
                     /gene="yghD"
                     /locus_tag="OQQ76_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GspM family type II secretion system protein
                     YghD"
                     /protein_id="HCS1969141.1"
                     /translation="MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAV
                     VFLFSVGYYVLIWQPLSERIVQQETMLQQLVAMNTRLRSAAPDIIAARKSATTTPAQV
                     SRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
                     AAEKTGMVNVQRLEFGRG"
     gene            complement(3835..5013)
                     /gene="gspL"
                     /locus_tag="OQQ76_002697"
     CDS             complement(3835..5013)
                     /gene="gspL"
                     /locus_tag="OQQ76_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HCS1969142.1"
                     /translation="MSSILEIFFPLCAADPIHWQRRTPDVEHGIWSDVANEQLQQWLQ
                     TDAIRLYIPGEWISVWQVELPDVARKQIPTILPALLEEELNQDIDELHFAPLNIDQQL
                     ATVAVIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGVMAGDAQRVICRIDECRGWS
                     AGRALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAVTTYGEP
                     EGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQA
                     EEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEM
                     RGFTFDQKRQILHLQLRAANFASFDKLRSALATDYVVQQDALQKEGDAVSGGVTLRRK
                     "
     gene            complement(5010..5987)
                     /gene="gspK"
                     /locus_tag="OQQ76_002698"
     CDS             complement(5010..5987)
                     /gene="gspK"
                     /locus_tag="OQQ76_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HCS1969143.1"
                     /translation="MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQ
                     EYQQALWYSASAESLALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQ
                     ACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRL
                     GREDSEYLARSVPFYAANQPLSDISEMRVVQGMDAGLYQKLKPLVCALPMIRQQININ
                     TLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQL
                     KTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGESE"
     gene            complement(5990..6589)
                     /gene="gspJ"
                     /locus_tag="OQQ76_002699"
     CDS             complement(5990..6589)
                     /gene="gspJ"
                     /locus_tag="OQQ76_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspJ"
                     /protein_id="HCS1969144.1"
                     /translation="MRRTRAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVADH
                     DQKLNLMQQTMSFLTHDLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGV
                     VNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDG
                     TRWQESWSSVQAIPVAVRMTLHSPQWGEIERIWLLRGPQ"
     gene            complement(6586..6957)
                     /gene="gspI"
                     /locus_tag="OQQ76_002700"
     CDS             complement(6586..6957)
                     /gene="gspI"
                     /locus_tag="OQQ76_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HCS1969145.1"
                     /translation="MKRGFTLLEVMLVLAIFALAATAVLQIASGALSNQHVLEEKTVA
                     GWVAENQTALLYLMTREQRAVRHQGESDMAGSRWYWRTIPLNTGNALLQAVDIEVSRH
                     EDFSSVIQSRRAWFSAVGGQQ"
     gene            complement(6954..7517)
                     /gene="gspH"
                     /locus_tag="OQQ76_002701"
     CDS             complement(6954..7517)
                     /gene="gspH"
                     /locus_tag="OQQ76_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001394829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspH"
                     /protein_id="HCS1969146.1"
                     /translation="MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDF
                     LTRFAQFNDRAVIEGQTLGVLIDPPGYQFMQRRQGQWLPVSATRLSAQVTVPKQVQML
                     LQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYS
                     AAQNACWAVKLAHDGALSLNQCDERMP"
     gene            complement(7521..7976)
                     /gene="gspG"
                     /locus_tag="OQQ76_002702"
     CDS             complement(7521..7976)
                     /gene="gspG"
                     /locus_tag="OQQ76_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003912123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HCS1969147.1"
                     /translation="MNSLSRTHKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKA
                     DRQKAISDIVALENALDMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRL
                     PKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ"
     gene            complement(7993..9216)
                     /gene="gspF"
                     /locus_tag="OQQ76_002703"
     CDS             complement(7993..9216)
                     /gene="gspF"
                     /locus_tag="OQQ76_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HCS1969148.1"
                     /translation="MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEA
                     RMNASAGGMLQRRRHAHRRVAAADLALFTRQLAMLVQAAMPLETCLQAVSEQSEKLHV
                     KSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
                     RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAM
                     SDALQASGVYWLAGLLALLVLGQWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFS
                     RTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGSSLRAALVELRLFPP
                     MMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVI
                     AILEPMLQLNNMVGM"
     gene            complement(9216..10708)
                     /gene="gspE"
                     /locus_tag="OQQ76_002704"
                     /pseudo
     CDS             complement(9216..10708)
                     /gene="gspE"
                     /locus_tag="OQQ76_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
     gene            complement(10708..12703)
                     /gene="gspD"
                     /locus_tag="OQQ76_002705"
                     /pseudo
     CDS             complement(10708..12703)
                     /gene="gspD"
                     /locus_tag="OQQ76_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020234996.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
     gene            complement(12733..13575)
                     /gene="gspC"
                     /locus_tag="OQQ76_002706"
     CDS             complement(12733..13575)
                     /gene="gspC"
                     /locus_tag="OQQ76_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001327198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspC"
                     /protein_id="HCS1969149.1"
                     /translation="MVRGMFWLMLLIISAKVAHSLWRYFSFSAEYTAVSPSANKPPRA
                     DAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAETRLNVVLRGIAFGARPGAV
                     IEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAATNKK
                     AVSDEAKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAVKPG
                     ADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDIS
                     IALR"
BASE COUNT         3051 a         3919 c         3502 g         3123 t
ORIGIN      
        1 tatgcgcatc ctgggggttc atcaccactg acgggaaact ctgctggcgg aacatcgctt
       61 tttgtaggtc tttgacgtcg aaactgacat acagatcgtg catctcctga cacaactggc
      121 gcaaagtgta gtcgcgatag cgcaccggat atttgttata aacgctcggc aacacctcag
      181 ccagcggcga gtcatcctca atatgctgtt caaactgcgc caacatctct accagttgtg
      241 ccagcttctc gtggctttcc gccggagtta ataagaacag aatggagttg agatcgcact
      301 tctccggcac aatgccgttc tcacgcagat agtgcgccag aatcgtcgcc ggaacgccaa
      361 agtcgctata ttcgccggtt tcggcattga tacctggtgt agtgagtaac agcttgcacg
      421 gatcaacaaa atactgatcc gcggcatatc cttcaaagcc gtgccacttc gcccccggct
      481 caaaactgaa aaaacggcgg tcgctggcta acactgatgt cggataatcc tgccacaatt
      541 tgccatcaac aacgggcggg ataaacgggc ggaacagctt acagcgcgca agaatagcct
      601 tgcgcgactc aatacccaac tcaacgcact cagcccacag ccgacgccca ctctcccctt
      661 catgaatttt ggcgttaaca tccagtgcag caaacagcgg atagaaaggg ctggtagaag
      721 catggagcat aaaggcgtta ttcaaccgct tatgcgggca aaaacgcgcc tgtccgcgga
      781 tatggttatc ttttttatgg atctgcgacg tctgtgagaa tcccgcctgc tgtttgtgca
      841 ccgactgagt cacaaagatc cccggatcgt tttcgttaag ttctaatagc agcggcgagc
      901 tatccgccat catcgggata aactgttcgt aaccgaccca cgcggaatca aacagaatgt
      961 aatcacacag atgcccaacg gtatcgatca cctgacgggc gttatagaca gttccgtcat
     1021 aggttcccag ctgaataatc gccaggcgaa acgggcgcgg cagctcggct ttttctggcg
     1081 caacgtcgcg aatttgctgg cgcagatact cttcattaaa acagtgcgca tcaataccgc
     1141 caatgaaacc aaacgggttg cgtgaagctt ccagatagac ctgcgtcgcc cccgcctgaa
     1201 tcagcgcgcc gtgatgattc gacttatggt tgttacggtc gaagagcacc agatcgccac
     1261 gcgttaacag cgcattcgtc accactttat tcgctgccga tgtgccgttc agcacaaaat
     1321 aggttttatc ggcatgaaag actttggctg cgaatttctg cgcatctttc gccaataagc
     1381 agatcgccca attttacgtc agcgttacac atatcggcgc gaaagacgtt ctcaccaaag
     1441 aaatcgtaaa aatggcgtcc ggcaggatgc tttttaaaaa acgcaccatg ttgatgtcca
     1501 gggcaagcaa aggtgctgtt gcccatctca acgtactgcg tcagcgtgtc ataaaacggt
     1561 ggcagcaaat tctcttcata ctgacaggct gcggattcca gctccagcca ctgctgctcg
     1621 ttgccgttga ttaccgccgt aacgcccgca ggtaattcaa cagcatgttc ggaatacaaa
     1681 aacaccggta gatgaaaacc ggtgcgctta agcaacgcaa gaatgccact gcgactatcc
     1741 gcagcggtaa tgacgactgc cgcgacgtcc gtaaaatcag tatctcccaa cgccaccacg
     1801 cgacgatgag aagaaagtcg ggataccagt tcactactgg cggcaatatt cattgatttc
     1861 ataagcgcaa acccgtttcg gggaaataag aataccggac aaggtggaaa accctgcccc
     1921 atgagatatg ggtcaaactg gtcaccagct ccgaccgcca gacatcagta aaagcagaaa
     1981 cgctctgatt ttactgttgt cctgcagtga gcgtgcgtta acttcaccgc atgagcagta
     2041 acatagaaag ggaaacgttt cgcgcgaaac ggcgataagc gagagaatgt aaggaggtgg
     2101 cgtgcatcgg gcaaactccg tacagagagg agaaaattcg cgcaatcatg gcacctttcg
     2161 ctaaagcgtg caagccagga ctttgcgacc agacaagcca tcaacaaggc aaaaagttca
     2221 taataagaaa atcaaacaat acagttaaca ggaactcttg tggtcatcgg cccttttatc
     2281 aacgctagtg cagtcttact gggtggcgtt ctcggcgcac tgctcagcca acgcttaccg
     2341 gaacgtatcc gcatctccat gacatctatt tttggtctgg catcgctggg gattggtatt
     2401 ttactggttg tgaaatgcgc caaccttcca gcgatggttt tagctacgct acttggcgct
     2461 ctaattggcg aaatttgttt gctggagaaa ggtgtcaata cagcagtcgc caaagcacaa
     2521 aatctgtttc gtcactcacg taagaagcca acgcatgaat cttttattca gaattatgtc
     2581 gcgattattg tcctgttttg cgccagcggc accgggatct tcggggcgat gaacgaaggg
     2641 atgaccggcg atccgagtat tttaatcgcc aagtcatttc ttgatttctt tacggcgatg
     2701 atcttcgcct gctcgctggg tattgcggtg tcggtaatta gtatcccatt actgatcatc
     2761 cagttaacgc tggcgtgggc tgccgcgctg atattaccgc tgaccacacc gtcgatgatg
     2821 gcagacttca gcgccgtagg cggtttattg ctgctggcaa ccggattacg catctgtggc
     2881 attaaaatgt tcccggtggt caacatgctt ccagcactcc ttctggcaat gccgctttcc
     2941 gccgcctgga ccgcctggtt tgcctgacaa tgcgtgcaat agcggcaaag tgatgataga
     3001 ttgtgcagtc tgcagtaaat tgaagaaatt tgattgacga gacgaggcga atcaggttta
     3061 atgcgccccg ttgcccggat agctcagtcg gtagagcagg ggattgaaaa tccccgtgtc
     3121 cttggttcga ttccgagtcc gggcaccact aattcttaag aacccgccca caaggcgggt
     3181 ttttgctttt ggatctgaca ataaccttca cgaaaaaagt ttgcttataa agtctggggg
     3241 aattactctc gccacgttaa cgagagtaat tttattgata ctaatctcct gatactttac
     3301 ccccgtccaa actccagccg ctgcacattc accatcccag tcttctcagc agcactggca
     3361 tcaatttgtg tcacccgcag cgcatacttt tcatccagcg cgtttaacca gttcagcagg
     3421 tcattaaaca ccaccggatc tatccagacc tgaatattct ccccacgctc ggctatccgc
     3481 ttgatgacta ccgagtgcgc ggaagcactg tcactgataa cccgcgatac ctgcgcaggc
     3541 gttgttgtgg cggattttcg cgccgcaata atatccggcg cggcgctcct cagtctggtg
     3601 ttcatcgcca ccagttgctg caacattgtc tcctgttgta ctatccgttc gctcaacggc
     3661 tgccagatga ggacgtaata tccgacgcta aacaggaaca ccaccgctgc cagtaacatg
     3721 cccttttcac gcggagaacg ccccgccagg tgttgtgcca gccagtgttc gccacggctt
     3781 aactggcgtt cacgccattg ctgaaaatag tgaataaatt tatcgcgtaa catgttattt
     3841 cctccgcaac gttacgccgc cggaaaccgc atcaccctct ttctgtaacg cgtcctgttg
     3901 cacaacataa tcggttgcca gtgcactacg cagtttgtcg aaactggcaa agttcgcggc
     3961 ccgtagctgg aggtgaagta tctggcgttt ttgatcaaag gtaaaaccac gcatttcgat
     4021 gtcggaaagt gacgctgatt tcagggtgct ggctatcgct gacaactcgg cgagcagccg
     4081 ggtatcgtcg gcctgtgggc gatatttttt cagcgccatc gtcacctgag agcgtaaatt
     4141 cacaatccgc ttctgctccg ggaacaacgt taagaactgt tcctccgcct gggtgcggct
     4201 ttgcgccacc tgttcgctga cgctccataa cgtcacgccc cgctccactg ccagcgcaac
     4261 tagaatcagc aatatcggca gaatcatcac ccgccagcgc gcccactgtt ttcggtagct
     4321 gacgcgaggc tgccacggcc ctgtcagcag gttcccttcc ggttcgccat aagtggtaac
     4381 ggcgggcaga gctgtaacgg tcaggcgttc agcgtctgcg ccagcccatg ctgatagctt
     4441 ttccggtgca atgccgacta cggttagcga aagcggtaaa tcctgctcat tgagctgggc
     4501 gcggaacatg accggagcca gcgcccgccc ggcgctccat ccccggcatt catcaatgcg
     4561 gcagataacc cgttgcgcat cgccagccat aaccccacaa ggaatggaca tccagtctgg
     4621 cgcgacggta gcgcgggtga tgccgttttc ctgcaaccac tgcgcaatgt tgcgcatatg
     4681 ctgttggtga atcactgcta cggttgccag ttgctggtcg atattcaacg gggcgaaatg
     4741 cagttcatcg atatcctggt tcagctcttc ttccagtaag gcgggcagaa tggtcggtat
     4801 ctgcttacgg gcgacatcag gcagttcaac ctgccagacg ctgatccatt cgccgggaat
     4861 gtagagtcga atcgcatcgg tttgcagcca ttgctggagc tgttcgttag caacgtcaga
     4921 ccagataccg tgctccacat cgggtgtacg gcgctgccaa tggatgggat cagcggcgca
     4981 aagcgggaaa aaaatctcaa ggatggaact cactcacttt ctcctgtctg atgccagaga
     5041 accgaaaagt gttgtgggcc catgcggaca attaacgagt tcatcgtcag ttcaatctca
     5101 ttcacggtga tatctgaacg cagccagaag taattgctgt ccacgctcag gacggttttt
     5161 agctgttttt tagtacgctc atcgacgtca gcaagtagcg gctgtgcaag aaactgatcg
     5221 acatcttccc agcccttcgc cggacgttgt tgtaataacg cccgcgcctg aacggggctt
     5281 aaccacgggt caaacagcgc ctcaagaatc acactttgcg tgacgtctaa agtattgatg
     5341 ttgatttgct ggcggatcat cggcagcgca cagaccagcg gtttcagttt ttgataaagc
     5401 ccggcgtcca ttccctgtac cacgcgcatc tcactgatat cagacagcgg ttgattggcg
     5461 gcgtagaacg gcaccgaacg ggcgagatac tcgctgtctt cacggcccag acgtgtctgc
     5521 acgctgcggt cctcgtcaat aaactcccac aggctttcgg ctatcagttc ggcccgataa
     5581 gcaggcacat ccaggcgcga gatcagggca atcaactgtt gtaccgcaag cggacgcgac
     5641 gccgttgtcg gctgagcaag ggcattcagg ttaaagcaag cctgtgcgtc acgcagggtg
     5701 accgcaattt gcccctgcgg cagagggaag aaacgagggc cggatgccca cggctgtgcc
     5761 agatgcacgc gcttttcatt tttcaggctc agactgagcg cgctcagcgc caggctttcc
     5821 gcactggcgc tgtaccacag cgcctgctgg tactcctgct ggctgcgcgt tcgcccaagt
     5881 tgttgctgca tccgcccgga aagcgtgatg gttaccagca tcataaccgc cagcaatacc
     5941 agcaccacga ccagtgccat tccgcgtttt ggtggtgagg tgatcatgat tattgcggcc
     6001 cgcgtaacaa ccagatgcgt tcaatctcgc cccattgcgg cgaatgcagg gtcatgcgta
     6061 ccgccacagg gatcgcctgt actgacgacc agctctcctg ccagcgcgtg ccgtcgtaga
     6121 actgcaaacg gagcgaatcg gccggaatca acttttgcat tgtcggcttc acgctgcctg
     6181 cggcatcggt cagcggccag gctaaccgtt cgagataacc gtcatgaatg cggtaaccga
     6241 cggtgagcag attgctgcgc ggcagacgca tcaacgggtt aaccacaccg ccgcgcacaa
     6301 aacgcattcc ttcactctca gacgccagca cgccagcgcc agccagtaaa gctggttcac
     6361 gctggccctg atcgcctctt accggacgcg gcatcatttg ggtcagatcg tgggtcagaa
     6421 aactcatcgt ttgctgcatg aggtttagtt tttgatcgtg atcggcgacg gcgctattca
     6481 cgcgcgtgac gccgttagtc acctgctgcg ccatcagtgc cagcgaggca aaaatggcaa
     6541 ttgccaccaa catttccagt aacgtgaaac cagcgcgagt ccttctcact gttggcctcc
     6601 cacggcgcta aaccaggcgc gtcgtgactg aatcaccgac gaaaagtctt cgtgacggct
     6661 gacttcaata tccaccgcct ggagcagcgc gttgcctgta ttcaatggga ttgttcgcca
     6721 gtaccagcgg cttcctgcca tatcgctctc gccctgatgc ctgaccgccc gctgctcacg
     6781 ggtcatcagg tagagcagcg cagtctggtt ttcagctacc cagcccgcta ccgttttttc
     6841 ctcaagaacg tgctgattac tcagcgcacc gctggcaatc tgtaacaccg ccgtggcagc
     6901 cagcgcaaaa atcgccagca cgagcatcac ttccagcaag gtaaatccgc gcttcatggc
     6961 atcctctcat cacattgatt gagggataac gcgccatcgt gtgccagctt taccgcccaa
     7021 catgcgtttt gcgccgccga gtagaagcgc agcgtaaacg gcgtggcggg ttcaaaaggc
     7081 gaaaaacgga tctgcggcgt cttctttttc gcctcttttt gcaactccag ttcaatatcg
     7141 tgcagcgtca ggcgacgacg ttgcagctcc agcgcatatt ccttctgcca gatatcactt
     7201 ccgggttgta acagcatctg cacctgtttc ggcaccgtaa cctgtgccga taaccgggtc
     7261 gcagaaacgg gcaaccactg cccctgacga cgctgcataa actgatagcc aggcgggtcg
     7321 attagcacac cgagtgtctg tccttcaatc actgccctgt cattaaactg cgcaaagcga
     7381 gtcagaaaat cctgtgccgc ttttttcgcg ggcggttcag aatcggtcgc aaacgtctgt
     7441 accacgcccg cactggcaag gccgataagg aaaatcacca gcatgatttc cagaagtgtg
     7501 aatccgcgtt caggcactgc ttactgaaac tcctgcaaat tccagttacc gatatctgcg
     7561 ccagcgcctt ccccgttttc ctgaccatcc gcccccaggg tataaacatc aaacagtcct
     7621 ttttcacccg ggctgagata ctgataatca ttgccccacg gatcctttgg cagtcgtttg
     7681 atgtatccac cagtacggta gttgcgggag tccgccatat tggctggctg ctggatcagc
     7741 gcttccagcc cctgttctgt ggtcggataa cgcccgttat ccagtcggta catatctagt
     7801 gcgttttcca gcgccacgat atcgctgatg gctttttgcc gatcggcttt ctctttgttg
     7861 cccaacaggt taggcaccac cagacttgcc aggacgccaa gaataacaat caccaccatc
     7921 acttccagca gggtaaaacc tgcccgtggt ttgtgtgtgc gggataacga attcatgtga
     7981 taactccgta aattacattc caaccatatt attcagttgc agcatcggct cgaggatggc
     8041 gatgacaata aacagcacca cgcccgccat catcaccacc agcgcaggct caaacagccc
     8101 caacgccagc cccacctggg tatcaaattc ccgttcctgg ttaacagcgg cctgctcaag
     8161 catggtttcc agttcgccgc tctgttcgcc ggaagcgatc atgtacagca tcatcggcgg
     8221 gaacaggcgc aactccacca gcgcggcgcg cagactgctt ccttcgcgga cgcgatctgc
     8281 cgccagcagc agttgttgtt cgacatagcg atttgccgac acggcggcag cggtctgaat
     8341 gccttccagt agcggaacac tgctggcggt gaggatgctt aatgtgcggg aaaaacgcgc
     8401 cgtattcagc ccgcgcgcaa cacggcccgt cacgggcaga cgcagcaagg ttttatccca
     8461 gcgcaggcgc atagtcggat ttttaagtag ccattgcccc agcaccagaa gcgccagcaa
     8521 tcccgccagc cagtaaacgc cgctggcctg taacgcatca ctcatggcga taagcgcacg
     8581 ggtggaggag ggtagcgcgt gtccgagatg atcaaactgt tcgatgattt tcggcaccac
     8641 tgccgtcagc aaaatagtga ccacgcccgt tgccaccacc agcataacca gcggatagag
     8701 catggcctgc aatagacgtg atttcaggcg ctgtcgctgt tcggtgtaat ctgccaggcg
     8761 attgagcacc acgtcgagat gcccggattt ttctccggca gcgaccatcg aacaaaacag
     8821 ggaatcaaag acgcggggat gttcgcgcag gctgtccgac agggtataac cttcctgaat
     8881 ccggctgcgc agcgccattc cgaggctctt cacatgcagt ttttcacttt gctcactgac
     8941 cgcctgcaag caggtttcca acggcattgc tgcctgcacc agcattgcca gttggcgcgt
     9001 gaacagcgcc agatctgccg ccgccacgcg acgatgtgcg tgccgccgac gctgcaacat
     9061 tccccctgcc gatgcattca tcctggcttc aatgtgcacg gggataagct ctttaccgcg
     9121 caacaactgg cgggcatgac gcgcggaatc cgcctcaatc atgcctttgg ttttgcgacc
     9181 attacgctcc agcgcctgat agtaaaacag tgccattacg cctccatggt tacccgcaga
     9241 acttcatcga gagaggtttc tccagcgagc actttctcaa tgccgttgct gcggataccc
     9301 gcagagtgtt gccggacata acgttccagc tccagctccc cggcctgacg gtggatcaaa
     9361 tcacgcaatg tggcatccac cacgtcagct catggatggc agtccgtccg cggaaacctt
     9421 tgtgattaca ggcggggcag ccctgcggat ggtacagagt gacggttcgc gcatcagtaa
     9481 tgcccagcag gcgtttttct tcgtcagtgg caggcgcggc ctgacggcag tcgggacaca
     9541 gcgtgcggac cagtcgctgc gccatcacgc ccgtcagact ggaagagagc aggaaaggct
     9601 ccacgcccat atcctgcaaa cgcgtgatcg cccccaccgc cgtgttggta tgcagcgtgg
     9661 aaaggaccag gtgtccggta agcgatgcct gaacagcgat ttctgcggtt tcggtatcgc
     9721 ggatttcacc gaccatcacc acatccgggt cctgacgcaa aatcgcgcgc aggccacggg
     9781 cgaaggtcat gccgacgcgg gtgttaacct gtgtctgacc gatcccttca atcatgtatt
     9841 cgatggggtc ttcaaccgtg agaatgttac gcgaatggtt gttcagctcc tgcaatccgg
     9901 cgtacagcgt ggtgcttttg ccggaacccg tcggccccgt caccagaaag atgccgtgcg
     9961 gtttgtgtaa cagctggcgc aactgcacgg tcagttgctg gctaagcccc agacgctcca
    10021 gcgtcaggcg ggcctggttt ttgtccagca gtcgcagcac cacgcgctcg ccccaggcag
    10081 aaggcatggt ggagacacgc acgtcaatcg cccggccgcc cagcagcagc gcaatacgtc
    10141 catcctgcgg tacgcgcttt tcggcgatat ccagccgtgc catcaccttg atacgcgata
    10201 ccagcagcga ggccagtttg cgccccgggc gcagcatttc atgtaatgtg ccgtcaacgc
    10261 gaaaacggat caccagactc ttttcaaacg tctcgatgtg gatatccgaa gcgccttctt
    10321 taatcgcctc tgccagcatg gcgttgatca gtttgatgat cggcgcatcg tcgtcacttt
    10381 ccagcagatc ttccgtttct ggcagttctt ccgcgagagt aaaaaagtcc tcagcagaac
    10441 cgagatcttc catcagctgg cgagcctcgg aagagtcccg ctgccagacc gcattcagcc
    10501 gctgttcaaa ttcggcctcg tcgatttgcc gcagcgtaaa gggcgcgttc agcccccgct
    10561 gcagctcctg caaaacagag agcgatagcg gatgaacgtg gaggatctcc agcgacgctt
    10621 cgcaccatgc caccaggcta aaccgacggc tgaaactgta gggcagacgc acggtgttgg
    10681 cggtggtttc ctgtgctaca ggcaccatta acgcgttctc ccggcattga ggaacgcgcg
    10741 aacttccggc ggtaaggcct ggttttgcgc tggcagtacc ggctgtgcgg tgtgcggcat
    10801 caggcttaaa ccttgctcat cacgatagat ctgttcggcg cgcatatagt tatatttgcg
    10861 ctgcgacacg ccgtctgccg ccataccgtc acgcagaatg gtcgggcgga taaacaccat
    10921 caggttacgt ttttcttttt tatccgccgt cgatttaaac aggttaccaa tcaatgggat
    10981 atcgcccagc ataggcactt tcgccacgct ttctcccgcc tgatcgtcca tcagaccacc
    11041 aagcacaatc agctcaccat cgttagccag cacggtggtt ttcagtttgc gctcaccaaa
    11101 caccacgtcg aggctggtct gtccttccac cttcgagact tcctgctcaa tcaccatctg
    11161 taccgcgtta ccttcgttaa tctgcggcgt gactttcagc atgatgccga cttttttcct
    11221 ttctactgta ttgaaaggat tgctgttatt ggagccaacg gtagagccgg ttaataccgg
    11281 aacgtcctag cccaccatga agaaggcttc ctggttgtcc agcgtagtga tgctcggcgt
    11341 ggagagaacg ttcgagctgg agtcgttttt aaccgcctgc accagtgcca tccagtcgcc
    11401 tttcaccacg ccaaccgccg taccgctaaa tccagaaaga agctgggcga gtgtggagag
    11461 atcgccgttg gtatccggat taatggtggt agcgccgttt tcactgatca ccgtcgagcc
    11521 tttctgcggt ttcgcctgag aaatggctgc ccccagcgta ccgataggga tctgcgtacc
    11581 attagcaaac tgcattaatc cggcatcttt cgacgcccac tgcacggcga atatccagtt
    11641 gttcaattac gctttgcagc gactgcatga tgtcctgcgg cgcggttaca atcagggcat
    11701 tactgtgttt gctggcggcg atggatacaa cctcacgccc gctaccgacc gtgccttccg
    11761 cctcttcttt agccgccgtg agcgtgccgc tgacctgttt cagcacatcg accagatctt
    11821 cggctttgct gtatttgaga tagaaaacct ggctgttgcc gctgcgttcc atttctgagt
    11881 ccagccgacg gatcaggcgg cgcattttgt cccgcgtggc cgggtcacca ctgacaatca
    11941 cactgttggt gcgttcgtcg gcgacaattt gagatttcag cgtcgcaggc tggttctcgc
    12001 cactgttttt cgtcaggctt tccagcacgc gggcgatttc cgaagccgag gcgttatcca
    12061 gcgggatcac ctcttcggtg cgattacccg cgtgatccac gcgctggatc acttccgtca
    12121 ggcgctccac aacggaggcg cgtccggtga gcataatcac gttggaggga tcgtaattaa
    12181 caacgttgcc tgagcctgcg ttgtcgatca tctggcgcag aatcggtgcc agctcgcgta
    12241 ccgacacatt acgtaccggc actactttgg tgaccatttc atcgcccgcg tagttgtcgc
    12301 tgccttcacc gaccagcggc agcggctcga ctttcgcagc gctggatttc accaccttca
    12361 gcacgtcgtt ttccatcggt acgacggcat acccctgtgc ttccagcagg ttaaggaata
    12421 gctggtaata ctggcgttca ttgagcgggg tcatggtgcg aatactcact ttcccctgta
    12481 cgcccggccc cataatgatg gttttattaa ggttagcgcc gacggtttcg atgaacgatt
    12541 tcaggtcggt atctttaaaa ttagcggtga aagtggcttc ttccgcccag accggtgaac
    12601 tgcataatgc cgctgccagc accagcggca gtaaacgctt ttttgttttg aggccagttg
    12661 tcttcttacg ccagaccgac aacgtaatat cacgccaaaa cacgatgaat gattctcctg
    12721 gattaaatgc ggttagcgca gcgcgatgga aatgtcgtgg cgcgcaccct tgcgtaaaac
    12781 cgtaagttga atggaatcca ttgaaggtaa ctgtcgcatc agagcaatca ttgctcgtgg
    12841 atcagtgaaa tcctgctgat ttagcgcaat ggcgatatcg ccttccttga aaccgctggc
    12901 atcgaacaga gaacgatctg cccccggctt cactgcataa ccgacaattc cctccttacg
    12961 cacaggcgta agctggatat agttaaaaat tttctgcgga tctttcgcca gtgcctgacg
    13021 cacggcagtc ggtatctcaa ctggcgcact gacagcaggt tcagcaacag cttgctttgc
    13081 ttcgtcactg acagcttttt tgttggtcgc ggcaacggtg gaacgctcct cttcagccag
    13141 gctcaggcgc tctatttttc cctgatagcg cagcatcaca tggtcgcgat tgatttcctc
    13201 aatcaccgcg ttgtgcgagc caagcgtttc accctgcaaa tagacctgct gtttaccgcc
    13261 ttcttcaata accgcgccgg gtctggcacc aaaggcgatc ccgcgcagca ccacattaag
    13321 acgcgtttct gccacaggca caggttcggg ttgttttacc ggcgtggcga cgggctgata
    13381 tttgccaaac cagttttgct ggctgattaa ttgcacgtca tttttatcga acgtttttgc
    13441 atccgcacgg ggcggtttat tcgccgatgg ggaaacagcc gtatattccg cagaaaagga
    13501 gaaatagcgc cagagtgaat gcgccacttt tgcagaaata ataagcagca tcagccagaa
    13561 catcccgcgt acaatttttg gtaatgactc caact
//
LOCUS       DAJVUN010000111        13534 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.111, whole genome shotgun sequence.
ACCESSION   DAJVUN010000111 DAJVUN010000000
VERSION     DAJVUN010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13534
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.111"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(192..1565)
                     /gene="cobA"
                     /locus_tag="OQQ76_002707"
     CDS             complement(192..1565)
                     /gene="cobA"
                     /locus_tag="OQQ76_002707"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HCS1969150.1"
                     /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALA
                     FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDTLNQRVSEAAEARRIFCNV
                     VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQ
                     LRGRVKQQFTTMSERRRFWEKLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEV
                     VLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC
                     VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAAS
                     GCSAYSGIPLTHRDYAQSVRLITGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQ
                     KLIEHGMPGEMPVAIVENGTAVTQRVIDGTLTQLGELAQQMNSPSLIIIGRVVGLRDK
                     LNWFSNH"
     gene            complement(1584..2390)
                     /gene="nirC"
                     /locus_tag="OQQ76_002708"
     CDS             complement(1584..2390)
                     /gene="nirC"
                     /locus_tag="OQQ76_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite transporter NirC"
                     /protein_id="HCS1969151.1"
                     /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL
                     IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMW
                     AILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALC
                     NWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYT
                     LAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKSNRPVADKFNQTETAAG"
     gene            complement(2512..2838)
                     /gene="nirD"
                     /locus_tag="OQQ76_002709"
     CDS             complement(2512..2838)
                     /gene="nirD"
                     /locus_tag="OQQ76_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HCS1969152.1"
                     /translation="MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISN
                     IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVIDG
                     VVQLRG"
     gene            complement(2835..5378)
                     /gene="nirB"
                     /locus_tag="OQQ76_002710"
     CDS             complement(2835..5378)
                     /gene="nirB"
                     /locus_tag="OQQ76_002710"
                     /EC_number="1.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-nitrite reductase large subunit"
                     /protein_id="HCS1969153.1"
                     /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAY
                     DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFY
                     DKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEA
                     AGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV
                     EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDI
                     YAIGECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG
                     DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE
                     LPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK
                     AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF
                     EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYS
                     VIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAG
                     FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT
                     RECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFY
                     IRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVVCEWTETV
                     NTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA"
     gene            complement(5640..6821)
                     /gene="tsgA"
                     /locus_tag="OQQ76_002711"
     CDS             complement(5640..6821)
                     /gene="tsgA"
                     /locus_tag="OQQ76_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter TsgA"
                     /protein_id="HCS1969154.1"
                     /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSS
                     MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSTA
                     MFILGVVSGITMSIGTFLITQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLAHSI
                     EWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCY
                     ILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTV
                     LAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVL
                     TCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTS
                     H"
     gene            7092..7664
                     /gene="ppiA"
                     /locus_tag="OQQ76_002712"
                     /gene_synonym="rotA"
     CDS             7092..7664
                     /gene="ppiA"
                     /locus_tag="OQQ76_002712"
                     /gene_synonym="rotA"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase A"
                     /protein_id="HCS1969155.1"
                     /translation="MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELEL
                     DKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEAD
                     NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD
                     KISQVPTHDVGPYQNVPSKPVVILSAKVLP"
     gene            7769..7936
                     /locus_tag="OQQ76_002713"
     CDS             7769..7936
                     /locus_tag="OQQ76_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfG family protein"
                     /protein_id="HCS1969156.1"
                     /translation="MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTVAEALA
                     RLVELRRHYER"
     gene            7926..8528
                     /locus_tag="OQQ76_002714"
     CDS             7926..8528
                     /locus_tag="OQQ76_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenosine monophosphate-protein
                     transferase Fic"
                     /protein_id="HCS1969157.1"
                     /translation="MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRA
                     ATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNAL
                     MQDLEEEGYLVGLEKTKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL
                     SWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE"
     gene            8560..9123
                     /gene="pabA"
                     /locus_tag="OQQ76_002715"
     CDS             8560..9123
                     /gene="pabA"
                     /locus_tag="OQQ76_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 2"
                     /protein_id="HCS1969158.1"
                     /translation="MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKP
                     QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG
                     KTSPITHNGEGVFRGLANPLTVTRYHSLVVEPGSLPACFDVTAWSETREIMGIRHRQW
                     DLEGVQFHPESILSEQGHQLLANFLHL"
     gene            9209..10429
                     /gene="argD/dapC"
                     /locus_tag="OQQ76_002716"
     CDS             9209..10429
                     /gene="argD/dapC"
                     /locus_tag="OQQ76_002716"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     acetylornithine/succinyldiaminopimelate transaminase"
                     /protein_id="HCS1969159.1"
                     /translation="MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEY
                     VDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNEPALRLGRKLIEATFAERV
                     VFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG
                     FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTASTPEFLQGLRELCDQ
                     HQALLVFDEVQCGMGRTGDLFAYMYYGVTPDILTSAKALGGGFPISAMLTTAEIASAF
                     HPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSD
                     IRGMGLLIGAELKPHYKGRARDFLYAGAEVGVMVLNAGPDVMRLAPSLVVEDADIDEG
                     MQRFAHAVAKVVGA"
     gene            complement(10496..12586)
                     /locus_tag="OQQ76_002717"
     CDS             complement(10496..12586)
                     /locus_tag="OQQ76_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312236.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1969160.1"
                     /translation="MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVP
                     ACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTA
                     ELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQP
                     LRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLS
                     AQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL
                     RVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPL
                     YARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWI
                     LMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASY
                     LILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQW
                     QSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEP
                     AFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQ
                     RLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPH
                     HGIWLSRKLRDSKA"
     gene            complement(12637..13269)
                     /gene="crp"
                     /locus_tag="OQQ76_002718"
     CDS             complement(12637..13269)
                     /gene="crp"
                     /locus_tag="OQQ76_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HCS1969161.1"
                     /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV
                     KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK
                     FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
                     PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR"
BASE COUNT         3265 a         3492 c         3555 g         3222 t
ORIGIN      
        1 gcagactgct cgttaagaac gatacaggaa tatttaattg gcgtcagtga gcgaatgact
       61 taattttgta agtcgctgta acggtgaata taacccatta gcagataata tttattaagg
      121 ggttatgttt tatttgctga atatataaaa agagtcatta agaaggccag aattctctgg
      181 cccgggttaa attaatggtt ggagaaccag ttcagtttat cgcgcaggcc aacaacccga
      241 ccaataataa ttagcgatgg actgttcatt tgctgagcaa gttcaccgag ttgcgtgagc
      301 gtaccgtcaa tcacgcgctg cgtgactgcc gttccgtttt cgacaattgc caccggcatt
      361 tcgccaggca taccgtgttc aatcagcttt tgctgaatag tcgcggcctg attcaacccc
      421 atatagaaca ccagcgtctg tttttctgcc gccaggtttt cccagtccag ctcgccaccg
      481 gtttttaagt gtccggtaat taagcgtacg ctctgggcat aatcgcgatg cgtgagtgga
      541 atacccgaat aggcagagca accagaagct gcggtaatac ccggaaccac cgagaacgga
      601 atacccgcgt tgcacagtgt ttccagctct tcgccaccac ggccaaaaat aaacggatcg
      661 ccacctttca gccgcaccac gcgtttgcct ttttgcgctt cccgcagcag gatctggtta
      721 atctcttcct gcggtacaca gtggtatccc gcgcgtttgc cgacgaaaac gcgatcagca
      781 tcgcggcgta ccagattcat aatatcgtca gaaaccagac ggtcgtagac caccacatct
      841 gcctgctgaa tttgttgcag tcctttcagc gtcagcagcc cggcatcgcc cggacctgca
      901 ccaaccagca ccacttcacc gcgatggtcg agcggttcgt tgattaactg ttcggtcgtt
      961 tcagtaatgg ctttctgatc gttgtttgcc agcgactgcg ctaggcggtc gttaacgaac
     1021 aatttctccc agaaacggcg acgctcactc atcgtggtga actgttgttt cactcgcccg
     1081 cgtaattgcc cggcatattt cgccacctgg cccagatgca acggcagcag tgattcgagt
     1141 ttttcgcgca acaggcgcgc cagaaccgga gaggtgccgc cagaggagac cgctaccatt
     1201 agcggtgagc ggtcaataat cgacggcata ataaagctgg cggctttcgg cgcatcgact
     1261 acgttacaga agatgcgacg agcttcagcg gcttcgctga cgcgctggtt aagcgtgtca
     1321 tcatccgtcg ctgcaatcgc cagccagcag gtgtcgagaa ggctttcatc aaatggccct
     1381 tcgacgaggg ttaacatgcc tgcatctgcc catgcggtga actgtggaat aaacgctaat
     1441 gcattcaccg ttaagcgagc gcctgcgtct aacagcaacc ttgctttgcg ttccgcgaca
     1501 tcaccaccgc cgacaatcag acagtcgcga tcgcgtaatt ggcaaaatat aggcaaatga
     1561 tccacgtaaa aaccccttag taattaaccg gcagccgttt cagtttgatt aaatttgtcc
     1621 gcaaccggac gattcgattt cggcgtagca taccaataac ccaatcccat gaatacggca
     1681 cctgataaag tattacccag cgtcacccac agcaggttat gaccaatacc cgccagcgtg
     1741 taggcttcgc tgtggttgcc gaaccaggag agcgcgaaca gcgtcatgtt agcgatagag
     1801 tgctcgtagc cggacgcgat aaatgccagc agacaccacc agatagcgat aaatttcgcc
     1861 gccccttcag tgcgcagcgc catccagatt gccaggcaaa ccagccagtt acacaatgca
     1921 cctttgaaga agagtaccat tgccggtgca gtggttttag ctagcgcgac ggagtgaacg
     1981 atgctggtat ctaccggcag caggctaccg ccgccccagc tatagagcat ggcaacgaag
     2041 acggaaccga ccaggttacc cagccaggtt tgcggcagga ttgcccacat ttgcccgtgg
     2101 ctgatgctgc ccgcttttac cccaaaggtg aggaacatgg tgtgtccggt gaacagttca
     2161 gaaccggcga taatcaccag cgttaaggcg ataccaaagg tcgcgcccat caccagcgga
     2221 cgtacggacg ggtcgagcaa attaccgagc gtgaaaatca agatgatccc aagacccaca
     2281 tacgcgcccg ccatggcgga gctgacccaa aagccgagcg ggttatttgc cgacaggcgt
     2341 gcaatgcgcg cagcgttagc cgcacactta ttaatagtgt ctgtaaacat ttgattatcc
     2401 tttaaaaaat aaaaaaaata aaacaaaaag tttaaaaaat gtcctgcaat ataccgaagg
     2461 tcattacagg accatgcaaa aaggggaggc attgcgcctc ccgttaaaac attaaccgcg
     2521 cagctgcacc acgccgtcta tcactcgtgc ttcgtaatgt ttgacggaaa actgttcgtc
     2581 ttccatgcac aagccatcac ttaagcgaaa acgctgtttt ttcagcgggc tggcgaccca
     2641 cagctcgccc tggtgttccg caatcagccc gcgtgacagc acgctggact cgaagaacgg
     2701 atcgatgttg ctgatcgcaa acacctggtc gctgtgatac gggcggaaaa tcgcgacctg
     2761 ctcgtcgcct aacagcgcgc agacgccggt ttcaggcagg atgtcatcga ttttgcagat
     2821 gtctttccac tggctcatgc gttgtcctcc accagagtta ccgggatacg ttcatacggc
     2881 gttgccggac ggtgctgttc gcgctctggc accatctgca cgttcgggtc acgcttgtcg
     2941 ctgttgatga agtgtttgaa gcgagtctgc gcggacggtg tattgaccgt ttcagtccac
     3001 tcacacacta ccgcttcacg caggcgcgcc atctcttctt ctagatgagc gttcagcccc
     3061 agtttgtcgt caatgatcac cgctttcagg taatcgatgc cgccttcgag gttttctaac
     3121 cacggcgcgg tacgcgtcag tttgtcggcg gtacggatgt agaacatcat gaagcggtcg
     3181 agatatttga tcagcgtttc gcgatcgata tccgctgcca gcagatccgc atgacgcggt
     3241 ttcatgccgc cgttgccgca aacatacagg ttccagcctt tttcagtggc gataataccc
     3301 acgtctttac cctgagcttc tgaacattca cgggtacagc cggagacacc gaacttcatt
     3361 ttgtgcggcg tacggatgcc tttgtagcgg ttttccagtt ccacgccgag gccgacgctg
     3421 tcgccaacgc cgtagcggca ccaggtgcta cccacgcagg ttttcgccat acgcagtgct
     3481 ttcgcatagg catgaccggt ttcgaagccg gcttcaatca gctgacgcca gatctctggc
     3541 agatcgtctt tctgtgcgcc aaacatcgcc aggcgctggg aaccggtgat tttggtgtag
     3601 agattaaatt cacgcgcgat acgacccact gccatcagcc cttccggggt gatttcaccg
     3661 cccggagaac gcgggatcac cgagtaggtc ccgtctttct ggatgttagc gaggaagttg
     3721 tcgttagaat cttgcagcgg agtatgttct ggcttcagaa tgtattcgtt ccagcaggag
     3781 gccagcagcg aaccgacggt cggtttacaa acttcacaac cgtagccttt gccgtgtttc
     3841 gccagcagtt cttcgaaggt tttaatgcct tcaacgcgga tcaaatggaa cagttcctga
     3901 cgcgaataag caaagtgttc gcacaggttg ttgttaactt cgatgccctg tttcgccagt
     3961 tccgcgttca gtacctgagt gaccagcggg atacagccac cgcagccagt acccgctttg
     4021 gtttcagctt tcagcgccgc aactgtgtgg cagcctttgt tgatggcagc aatcagatca
     4081 cctttagtga cgtcgaagca ggagcagatt tgcgcgctgt ccggcagttt atcaacaccg
     4141 atagacggct taccgctacc cgagtgcgcc ggcagaatca gagaatccgg gttttccggc
     4201 agctcgatag cattcagcac cagttgcagc aagttaccgt agtcgctggt atcgcccacc
     4261 agtaccgcac cgagcagggt tttgttgtct tcgctgacga tcaggcgttt gtagatctct
     4321 ttgctttcgt cgaggtaaac gtagctacgt gcgccaggcg tgcgaccatg agcatcacca
     4381 ataccgccta cgtccacgcc cagcagtttc agcttggcgc taaggtcagc accttcaaag
     4441 gcgttttcgc taccgagaat atggtcaacg gcgacctgcg ccattttgta gccaggtgct
     4501 accagaccaa atacacggtt gttccagctt gcgcattcac cgatagcgta gatatccgga
     4561 tcggaagttt ggcaggaatc attaatgacg atacccccac gcggagcaac gtccagacca
     4621 cactgggttg ccagcttatc gcgcggacgg ataccggtag agaagacgat aaagtcgact
     4681 tccagttcgc tgccgtcggc aaaacgcatg gttttacgtg cttcgacacc ttcctgcaca
     4741 atctcaaggg tgtttttgct ggtgtgaacg cgcacgccca tactttcgat tttgcgacgc
     4801 agctgctcgc cacccatctg atcaagctgt tccgccatca gcataggggc aaattcgata
     4861 acgtgggttt caatacctaa gtttttcagc gcgccagcgg cttccagacc taacaggccg
     4921 ccaccaacaa cggcaccgcg tttgctgcga cgggcgcagg attcaatggc gttgaggtct
     4981 tcaatggtgc gatagacaaa gcagtcctga gtatcagaac ctttgattgg tgggatccac
     5041 gggtaggaac cggttgccat gatcagcttg tcataaaaaa cggtacgtcc ggcgctggag
     5101 tgaatcacct tctcctgacg gttgatggtg atagcgcgtt cgccgaccag aactttgatg
     5161 ccgtgtttct cgtagaagcc ttcgcgcacc agcgacagct cttcggcggt gtggtgagag
     5221 aagtaagacg agaggtgtac gcggtcataa gcgatgcgcg gttcttcaca gaaaacggta
     5281 atatcaaagt tggccgcatc agatttatca agaagatctt cgataaagcg atggccgacc
     5341 ataccgttac cgataattgc gagtctgact ttgctcattt ttgcctcgat ttcttttcta
     5401 ttaccgccta ccttaacgat tcagcaaccc cgcttattga tgtaaatcaa attcaccttt
     5461 atatacccct taaggggcat attgctgatt tgtataaatt ttcttaagtc acggaattgt
     5521 ctgacatttc atgtttgtgc aaaaaataga caaaatgaac gggtttatag aaatagatgc
     5581 acgtagcggg gttagagagg aaaaggccgg acgacgatag tgccgtccgg cattagcaat
     5641 taatgagagg tcagggtgtt atgctgacgg tgacggctga cgaaacctaa caggaagcac
     5701 atcacaaaga cgacagcgta cagaccgttt gctgtaagca gtgccgcctg cggaccgcta
     5761 tgttcaacaa tcgggccggt aaccacaaag gtcaacatag taccgatggt tccgcaggtc
     5821 aggacaaagt taaccagttt tggcgacggt actttggtct gctgtgaacc cagggtgatg
     5881 atggtggtat agatcgcgct ggagaagaag cccagagcga gaattgacca cgccatatgt
     5941 gctggtgttc cggtgttaaa gacgtacatc agaatcgcag ccagaccagc cagtacggtc
     6001 agaatgcgtt gcaaatcaaa gaagcgaaga ataaagctga acgcccacat gccgaccatg
     6061 tatgacatcc agaagttact caccagcgtg cccgcgtcgt tcaggctcat gcccaggcct
     6121 ttggcatact caggcaccca ggagataaaa cctaactgac cgaggatgta gcacagcgcc
     6181 gcaacagaga gaaacagtac gccgatcccc cacttttctt tctctaccgg agcatccgtt
     6241 tttggtgcat gtttgcccag tgctgggaac tcacagccga aggtcagaat aaaaatagcg
     6301 acatacacca gcccgatgca ggcataaacc cagtaccact caatgctgtg cgccagtaga
     6361 aacgcggcga tcattgggaa aatcatccca gccatactga agaaggagtc agtaaataac
     6421 aggcgggaac cgcgctgacg cccttcatac atttgtgtta tcaggaatgt accaatcgac
     6481 atagtaatgc cgctgaccac cccgagaatg aacatcgccg tcgagaacag cgccaggctg
     6541 tggctgaaca tcaaaccggc aaccgccagc accatcagga gaaagccaaa acgtaactgc
     6601 gttttcaacg ggacgatttc catcagccag gcgttgagga agatagagat taaaatgccg
     6661 gcgttgagga aggtgaaggt gttactcata ctggaaacag gcagattgaa ataatcggcg
     6721 atatttccca tcaccatccc ggtgacaata accaacgcac cagtcagtgc gtaggagaga
     6781 aagctaatcc atgtgagctt gatgcgattg ctgttagtca tgattggcct gcgttcaaaa
     6841 ataaaatggc atagcgggat atgccgcgag cgggtgattt taggtgattt tgtgatctgt
     6901 ttaaatgttt tattgcaatc ggttgctaaa ttgcatttta agaggtgatc ttgatcacgg
     6961 aataaaaagt gatcgtcagg ttacatatat ttcagatacg taaaattagg taaagggatg
     7021 gccttgttct tgaaggctat ttagaatctc ttcacttgct ttttttctgc tctgtttgtt
     7081 aaggaaatct catgttcaaa tcgaccctgg cggcgatggc tgctgttttc gctctttctg
     7141 ctctttctcc cgcagcaatg gcagcgaaag gggacccgca cgtattgttg acaacctcag
     7201 ctggtaacat cgaactggag ctggataaac aaaaagcgcc agtgtctgtg caaaactttg
     7261 tcgattatgt gaacagcggt ttttataaca acactacctt tcaccgcgtc attcctggct
     7321 ttatgattca gggcggcggt ttcaccgagc agatgcagca gaaaaaacca aacccgccaa
     7381 tcaaaaatga agccgataac ggcctgcgca acacgcgtgg caccatcgcg atggcgcgta
     7441 ccgctgacaa agacagcgcc accagccagt tctttatcaa cgttgccgat aacgccttcc
     7501 ttgaccatgg tcagcgtgat ttcggttacg cggtatttgg taaagtggtg aaaggcatgg
     7561 acgtggccga taagatttcc caggtgccga ctcatgacgt tggtccgtac cagaatgtgc
     7621 cgtcaaaacc ggtagttatc ctttccgcta aagtcctgcc gtaatgattt ctcgcgcggg
     7681 caatcttgcc cgcgcttctg ctctcccggc gtaacccgga tttgccgctt atacttgtgg
     7741 caaatggaca cgttcaggga ggcatcaagt gaagaaactc accgataagc aaaagtcccg
     7801 tctctgggag cttcagcgta atcgtaattt ccaggccagt cgccgtcttg aaggcgtcga
     7861 gatgccttta gtcactctta ctgtcgcaga ggctttagcg cgccttgtag agctgaggag
     7921 gcactatgag cgataaattc ggcgaagggc gcgatccgta tctttatcca ggccttgata
     7981 tcatgcgtaa ccggctgaac atccgccagc aacaacggct ggaacaggcc gcttacgaaa
     8041 tgacggcgct gcgtgctgcg accattgagc ttggtccgct ggtgcgcggt ttaccgcatt
     8101 tgcgaactat ccatcgccag ctgtatcagg atattttcga ctgggcaggg caactgcgtg
     8161 aagttgatat ttatcagggc gatacgccgt tctgccactt tgcttatata gaaaaagagg
     8221 gcaatgccct gatgcaggat ctggaggaag aaggttatct ggttggcctg gagaaaacga
     8281 agttcgtcga gcggctggcg cattactatt gtgaaatcaa cgtgctgcat cccttccggg
     8341 tgggaagtgg tctggcacag cggatcttct tcgagcaact ggcgattcat gccggatatc
     8401 aactgagctg gcagggtatc gaaaaagagg cctggaatca ggcaaatcag agtggggcaa
     8461 tgggggatct caccgcactg cagatgatat ttagcaaagt ggtaagcgaa gccggggaat
     8521 ctgagtaaaa tagcgcggtt ctttcgtacc ggagccgcca tgatcctgct tattgataac
     8581 tacgattctt ttacctggaa cctctaccag tacttttgtg aactgggggc ggatgtgctg
     8641 gttaagcgca acgatgcgtt gacgttggcg gatatcgacg cccttaaacc acaaaaaatt
     8701 gtcatctcac ccggcccctg tacgccagat gaagccggga tctcccttga cgttattcgc
     8761 cactatgccg ggcgcttgcc gattcttggc gtctgcctcg gtcatcaggc aatggcgcag
     8821 gcatttggcg gtaaagttgt gcgcgccgca aaggtcatgc acggcaaaac ctcgccgatt
     8881 acacataacg gtgagggcgt atttcggggg ctggcaaatc cacttaccgt gacacgctac
     8941 cattcgctgg tggtggaacc tggctcatta ccagcgtgct ttgacgtgac ggcctggagc
     9001 gaaacccgcg agattatggg gattcgccat cgccagtggg atctggaagg tgtgcagttc
     9061 catccagaaa gtattcttag cgaacaagga catcaactgc tggctaattt cctgcatctc
     9121 tgatttccga ttgccattca gtgatttttt atgcatattt tgtgattata atttcacatt
     9181 tatttatgcg taacagggtg atcatgagat ggcaattgaa caaacagcaa ttacacgcgc
     9241 gactttcgat gaagtgatcc tgccgattta tgctccggca gagtttattc cggtaaaagg
     9301 tcagggcagc cgaatctggg atcagcaagg caaggagtat gtcgatttcg cgggtggcat
     9361 tgcagttacg gcgttgggcc attgccatcc tgcgctggtg aacgcgttaa aaacccaggg
     9421 cgaaactctg tggcatatca gtaacgtttt caccaatgaa ccggcgctgc gtcttgggcg
     9481 caaactgatt gaggcgacgt ttgccgaacg cgtggtgttt atgaactccg gcacggaagc
     9541 taacgaaacc gcctttaaac tggcacgcca ttacgcctgt gtgcgtcata gcccgttcaa
     9601 aaccaaaatt attgccttcc ataacgcttt tcatggtcgc tcgctgttta ccgtttcggt
     9661 gggtgggcag ccaaaatatt ccgacggctt tgggccgaaa ccggcagaca tcatccacgt
     9721 tccctttaac gatctccatg cagtgaaagc ggtgatggat gatcacacct gtgcggtggt
     9781 ggttgagccg atccagggcg agggcggtgt gacggcatcg acgccagagt ttttgcaggg
     9841 cttgcgcgag ctgtgcgatc aacatcaggc attattggtg tttgatgaag tgcagtgcgg
     9901 gatggggcgg actggcgatt tgtttgctta catgtactac ggtgtgacgc cggatattct
     9961 gacttctgcg aaagcgttag gcggcggctt cccgattagc gccatgctga ccacggcgga
    10021 aattgcttct gcgtttcatc ctggttctca cggttccacc tacggcggta atcctctggc
    10081 ctgtgcagta gcgggcgcgg cgtttgatat catcaatacc cctgaagtgc tggaaggcat
    10141 tcaggcgaaa cgccagcgtt ttgttgacca tttgcagaag atcgatcagc agtacgatgt
    10201 gtttagcgat attcgcggta tggggctgtt aattggcgcg gagctgaaac cacactacaa
    10261 aggtcgggcg cgtgatttcc tgtatgcggg tgcagaggtt ggcgtaatgg tgctgaatgc
    10321 cggaccggat gtgatgcgtt tagcaccgtc gctggtggtg gaagatgcgg atatcgatga
    10381 agggatgcaa cgtttcgccc acgcggtggc gaaggtggtt ggggcgtaaa taagacgcat
    10441 caggcaaaat atgtcggatg cggcgtgaat gccttatccg atggtttagc ctgtattacg
    10501 ccttcgaatc ccgcaacttg cgactcagcc aaatcccgtg atgcggtcgc tgacgccatg
    10561 ccatcgacga aatggtgtgc atggtgttca gatgaccaat aacccgctgt aaatgctgct
    10621 ccagcgtacc tgccgcgcct tcgtgcggct gcatctccgg cgcatccatg atattggcat
    10681 cgccagaact acccggttcg tcatactcca gtcgctgctg acaacgctga atggcgattt
    10741 cacaagactg taaatactct tgtgccagtt caggtggcaa tgcccggtgt tcccgcgcca
    10801 gcgtggtcat ggcattaata tgctcaacaa taaactggct gtgcgttacc cacagtttca
    10861 tatctgccag ataatggctg ttaaacgccg gttcctgcat cgcctgattc aatgagttat
    10921 acagagtgtt atgtgcctga tttacccgca ttcgctgcca ggccagtggc gtaggttgcg
    10981 gatcctcgct aagaatcaag cgaatcgctt cctgataggc ttctaaagcg tcatgggcgt
    11041 ttttacgcaa taacccgctc tgccactgcg gccacagcca gacagtaccg ccgaaagcaa
    11101 ttaaacaacc aataatggta tcgataagac gcggaaggat gtattgctcg ccgttcaacc
    11161 acaatagttg cagggtatac actgcggtaa tagtaaaacc gaccgtcgcc cagccgtagt
    11221 ttttgcgcaa tatcaggtag ctggcgaggg tggtaatcag catcaacgtc agggtgtaac
    11281 cttcgggaat tttaaagtgc agcgccacgc ccgcaatgat taacccgacc acggttccca
    11341 cggagcgatt cacaatcctc agacgggttg cgccatagcc attttgtgtc accagcaata
    11401 ccgtcatcag gatccagtac gacttcggca gatgcagcgc ggtgcccatc aggctggcaa
    11461 cgcttaacat cacactgagt cgtccggcat tgcgtagcgc cggagacttt agtgacagat
    11521 aacttttcag cgccggaagt aatggcattc gccgctgttt atcggccagt aagtcacggg
    11581 catagagcgg tttttgggtg cgcagcacgc gggcgatgcg gctgaaatgc cagtagcaga
    11641 attgcccaac cggattatcc ggatgctggc gggcgatttt ttccagtgcg ccaatttgct
    11701 tttccatcgt aaaacgcgtt ggcaggcgat ggtaaagaat gtcatcagcc agcacgcgca
    11761 ggcgagcggc gacggtttgc gcattccagc ggataacttc ttccgcatgg ctacgctcga
    11821 ccagcttttg cacctcttcc ggctgatgca aactgaccga aatatgttcc tgtaaatcca
    11881 gcgcctcctg gaaaatacgc agcatccgct tgtagtcagt attattttgc gcggaaagca
    11941 tatgcatttg ctgatagcac tgggtaatta gatcgaccgc tttttgctgg cgcaccagca
    12001 gcggcggcag cgctttttca gggtcggtgt gctgggtaag caggctgtat ttggcttcac
    12061 aataatctgc cagttcacgg tacagcagac ttagtgactc gcgcagcggt tgttcgcgcc
    12121 agatccagaa ccaaaaccag ttaaacaatc cgtaccagag agtgcccaac gcatagatga
    12181 gcaacggttc ccagaccggc atgtatcccg ccagactgag ggtaaaaatg gctgccagca
    12241 gcgatgcggg aagcaatttt gcgtgcaatg gccccaactc agcagtgacg ccaagtacca
    12301 gcgttaatcc ggtcagcaaa aagggcaggg gaacatcttt tgccagtagc agctgtgtca
    12361 gtaagctaca ggtggcaaac agcgacgcac caatgattaa gcgtttgaaa aaacgtttat
    12421 gaggcgtatc aaggcccgca atattgcaac aggcaggaac gagagagaag agcagaccga
    12481 atcgtaattc gccaagcatt aacccaacgg ccacgggcaa acatagcacc agcgtttgtc
    12541 gaagtgcata gttgatatcg gggtgataaa tcagtctgcg ccacatcggg ggaaacaaaa
    12601 tggcgcgcta ccaggtaacg cgccactccg acgggattaa cgagtgccgt aaacgacgat
    12661 ggttttaccg tgtgcggaga tcaggttctg atcttcaagc atcttcagaa tgcgtcccac
    12721 ggtttcacga gaacagccga caatctgacc gatttcctga cgggtaattt tgatttgcat
    12781 accgtccggg tgagtcatag cgtctggttg ttttgccaga ttcagcagag tctgtgcaat
    12841 gcggcccgtc acgtcgagga acgccaggtt gcccactttc tctgaagtga cttgcagacg
    12901 acgcgccatc tgtgcagaca gacgcatcag aatgtccggg tttacctgaa tcaattggcg
    12961 aaattttttg tacgaaattt cagccacttc acaggcggtt ttcgcacgta cccatgcgct
    13021 acgttcctgg ccctcttcaa acaggcccag ttcgccaata aaatcaccct gattcagata
    13081 ggagaggatc atttctttac cctcttcgtc tttgatcagc actgccacag agcctttaac
    13141 gatgtagtac agcgtttccg ctttttcacc ctggtgaata agcgtgctct tggatgggta
    13201 cttatgaatg tggcaatgag acaagaacca ttcgagagtc gggtctgttt gcggtttgcc
    13261 aagcaccatg cgcggttatc ctctgttata agctttctcc agagccagat aacgccgctg
    13321 tctctggatt gccgaaatat gcttcccgct acctgggaag gggctatcaa ctgtactgca
    13381 cggtaatgtg acgtcctttg catacatgca gtacatcaat gtattactgt agcatcctga
    13441 ctgttttagc atagctttcg ctttgtgtct cctggtgtct cgcttcagca tgacccaggt
    13501 cgccttccgt tgcgcgattt ggttagtacg cgta
//
LOCUS       DAJVUN010000112        13472 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.112, whole genome shotgun sequence.
ACCESSION   DAJVUN010000112 DAJVUN010000000
VERSION     DAJVUN010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13472
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.112"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ76_002719"
     CDS             complement(103..3324)
                     /gene="carB"
                     /locus_tag="OQQ76_002719"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HCS1969162.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
                     ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
                     DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM
                     EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
                     VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ
                     ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVD
                     GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGV
                     REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG
                     GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
                     DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
                     ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
                     AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
                     YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA
                     TGVPLAKVAARVMAGKSLAELGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
                     GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD
                     ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR
                     RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK"
     gene            complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ76_002720"
     CDS             complement(3342..4490)
                     /gene="carA"
                     /locus_tag="OQQ76_002720"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HCS1969163.1"
                     /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
                     DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
                     KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK
                     EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI
                     VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA
                     LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD
                     GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK"
     gene            complement(4946..5767)
                     /gene="dapB"
                     /locus_tag="OQQ76_002721"
     CDS             complement(4946..5767)
                     /gene="dapB"
                     /locus_tag="OQQ76_002721"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HCS1969164.1"
                     /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL
                     LGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG
                     TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH
                     RHKVDTPSGTALAMGEAIAHALDKDLKDCAVYSRESHTGERVPGTIGFATVRAGDIVG
                     EHTAMFADIGERLEITHKASSRMTFANGAVRSAFWLSGKESGLFDMRDVLDLNSL"
     gene            complement(5934..6848)
                     /gene="rihC"
                     /locus_tag="OQQ76_002722"
     CDS             complement(5934..6848)
                     /gene="rihC"
                     /locus_tag="OQQ76_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HCS1969165.1"
                     /translation="MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK
                     TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP
                     AFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTP
                     NAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALF
                     SHYRSGSMQSGLRMHDLCAIALLVRPELFTLKPCFVAVETQGEFTSGTTVVDIDGCLG
                     KPANVKVALDLDVKGFQQWVAEVLALAS"
     gene            complement(6914..7864)
                     /gene="ispH"
                     /locus_tag="OQQ76_002723"
                     /gene_synonym="lytB"
     CDS             complement(6914..7864)
                     /gene="ispH"
                     /locus_tag="OQQ76_002723"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HCS1969166.1"
                     /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
                     VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
                     HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK
                     LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL
                     VVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQ
                     NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD"
     gene            complement(7866..8315)
                     /gene="fkpB"
                     /locus_tag="OQQ76_002724"
     CDS             complement(7866..8315)
                     /gene="fkpB"
                     /locus_tag="OQQ76_002724"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HCS1969167.1"
                     /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL
                     SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT
                     AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA"
     gene            complement(8384..8878)
                     /gene="lspA"
                     /locus_tag="OQQ76_002725"
     CDS             complement(8384..8878)
                     /gene="lspA"
                     /locus_tag="OQQ76_002725"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HCS1969168.1"
                     /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP
                     SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYA
                     LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSR
                     AKKQ"
     gene            complement(8878..11694)
                     /gene="ileS"
                     /locus_tag="OQQ76_002726"
     CDS             complement(8878..11694)
                     /gene="ileS"
                     /locus_tag="OQQ76_002726"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HCS1969169.1"
                     /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA
                     KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI
                     ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK
                     TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD
                     QDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD
                     LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT
                     APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA
                     LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQA
                     RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW
                     WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQH
                     RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI
                     LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV
                     VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA
                     DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL
                     ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALG
                     DELRFVLLTSGATVADYHDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV
                     AEHAEICGRCVSNVAGDGEKRKFA"
     gene            complement(11737..12678)
                     /gene="ribF"
                     /locus_tag="OQQ76_002727"
     CDS             complement(11737..12678)
                     /gene="ribF"
                     /locus_tag="OQQ76_002727"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HCS1969170.1"
                     /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR
                     KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL
                     TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG
                     GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV
                     SPVKGVYAVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL
                     RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA"
     gene            complement(12686..12904)
                     /locus_tag="OQQ76_002728"
     CDS             complement(12686..12904)
                     /locus_tag="OQQ76_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2575 family protein"
                     /protein_id="HCS1969171.1"
                     /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGHFLPVICAMAMK
                     SHFFLISVLNRRLTLTAVQGILGRFSLF"
     gene            13007..13270
                     /gene="rpsT"
                     /locus_tag="OQQ76_002729"
     CDS             13007..13270
                     /gene="rpsT"
                     /locus_tag="OQQ76_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HCS1969172.1"
                     /translation="MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
                     AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
BASE COUNT         3150 a         3802 c         3399 g         3121 t
ORIGIN      
        1 caaaagattt acttaatggg caaaaaaaac ggtcctcatc agagaaccgt attacttatt
       61 cgatcaaatt agcggatgaa aaatatccgc catgacacgc tattatttga tctgcgcgtg
      121 catttcctgc accgaaatta ctttttcggt cgcgtcggca ttcagcgcca tcgcggtagc
      181 gaaaccaccg ttcagggtgg tgtcataatg cactttatat tgcagcgcac tgcgacggat
      241 cacgcgggag tcttcaatcg cgcgacggcc tgaagtggtg ttgatgatgt aggtatattc
      301 gccattcttg atgcggtcct gaatgtgcgg acggccttca tgcaccttgt tcaccagacg
      361 cggattaatg cccgcttcgc ccagcacaat cgccgtgccg tgggtcgcat ccagctcgaa
      421 gccctgtttc agcagttttg ccgccaggtc caccacgcgt tctttatcgc cttcgcgcac
      481 ggaaagcaac gcacgaccgt gtttcttcat ggtggagttg ctgcccagct gcgctttggc
      541 aaacgcttca gcgaaggtgc ggcccacgcc catcacttcc ccggtggagc gcatttctgg
      601 ccctaacagc gggtcaacac ccgggaattt attgaacggc agcaccactt ctttcaccga
      661 gtagtacggc gggataactt ctttggttac gcccagctca gccagcgatt tgccagccat
      721 cacacgcgcc gccacttttg ccagcggtac gccggtggct ttggagacga acggaacggt
      781 acgcgccgca cgcgggttaa cttcaatcag gtagacttcg ttgtttttca ccgcaaactg
      841 cacgttcatc agaccgcgca cctgcaattc gaaggccagt ttctgcacct gctggcgcat
      901 cacatcctga atttcctgac ttaaggtgta ggctggcaga gaacatgcgg agtcaccgga
      961 gtgcacgccc gcctgctcga tgtgctccat gatgccgcca atcagcacca tttcgccgtc
     1021 gcagatggca tccacgtcaa cttctaccgc gtcatcaagg aagtgatcca gcaacactgg
     1081 cgcatcgtta gacacgctga ccgccgtctg gaagtagcga cgcaggtcag cttcgtcata
     1141 gacgatttcc atcgcccgac cgccgagaac gtaagacgga cgtaccacca gcgggtagcc
     1201 aatctctttc gccttctcta ccgccatttc aatagcggta acggtggcgt tcgccggttg
     1261 tttcagtttc agacgctcaa ccgcatgctg gaagcgttca cggtcttctg cacggtcgat
     1321 agcatccggg ctggtgccga taaccggtac gccagcagct tccagcgcgc gcgccagttt
     1381 cagcggggtc tgaccgccgt actgaacgat aacgcctttc ggcttctcaa tacgcacgat
     1441 ttccagcaca tcttccagag ttaccggctc gaagtagagg cgatcggaag tgtcgtagtc
     1501 ggtggagacg gtttccgggt tacagttaac cataatggtt tcgtaaccgt cttcgcgcag
     1561 cgccagcgag gcgtgtacac agcagtagtc gaattcgata ccctgaccga tacggttcgg
     1621 gccgccgccg agaaccatga ttttttcacg gtcggtagac ggattcgctt cgcactcttc
     1681 ttcataagtg gagtacatgt aagcggtgtc ggtggcgaac tctgccgcac aggtatccac
     1741 gcgcttataa accgggtgca ggtcatactg gtcgcgcagc ttgcggattt ccgcttcgcg
     1801 cacgcccgcc agttttgcca gacgcgcatc ggcaaagcct ttgcgtttca gctggcgcag
     1861 gaattcagcg ttcaggccag tgatgcccac ttccgctact ttctcttcca gacgcaccag
     1921 ttcttcaatc tgtaccagga accagcggtc aatattggtc aggttgaaca cgccgtccac
     1981 agacaggccc gcacggaagg catcggcgat gtaccagata cgctctgcgc cagcatcttt
     2041 cagttcgcga cggattttgg ttaacgcttc cgggtcatcg aggctcactt tcgggtcgaa
     2101 tccagtcgca ccgacttcca ggccgcgcag cgctttttgc agggattcct gctgcgtgcg
     2161 accaatcgcc atcacttcgc caaccgattt catctgagtg gtcagacggt cgttagcacc
     2221 agcgaatttt tcgaagttga agcgaggaat tttagtaacc acatagtcga tggacggctc
     2281 gaaggaggcc ggagtacgtc cgccagtgat gtcgttcatc agttcgtcga gggtgtaacc
     2341 caccgccagt ttcgccgcca ctttagcaat cgggaaaccg gtcgctttcg acgccagcgc
     2401 cgaagaacgg gacacgcgtg ggttcatttc gataacaatc aggcgaccgt ttttcgggtt
     2461 caccgcaaac tggacattgg aaccaccggt ttcaacgccg atttcacgca gcaccgccat
     2521 cgaggcgtta cgcatgattt gatattcttt gtcggtcagc gtttgggctg gcgcgacagt
     2581 gatggagtca ccggtatgga tgcccatcgc atcaaagttt tcgatagagc agacgatgat
     2641 gcagttgtca tttttatcac gcaccacttc catctcgtac tctttccagc cgatcagcga
     2701 ctcatcaatc agcagctctt tggttgggga gagatccaga ccgcgggcgc aaatttcttc
     2761 aaactcttcg cggttataag cgataccgcc gccgctaccg cccatggtaa aggatgggcg
     2821 aataatgcac gggaagccca cgtcagcggc aaccgccagc gcttcttcca tcgtgtgtgc
     2881 gataccggaa cgcgcggttt ccagaccaat tttcttcatc gctacgtcga aacgacggcg
     2941 gtcttctgct ttatcaatcg catcggcggt cgcaccaatc atagtcacgc cgaactcttc
     3001 caacacgccc tgacgctcca gctccagcgc gcagttcagc gccgtctgac cgcccatcgt
     3061 tggcagcacc gcgtccgggc gctctttttc aataatcttg cgtactactt cccagtgaat
     3121 cggctcgatg taggtcgcat cggccatttc cgggtcggtc atgatggtcg ccgggttgga
     3181 gttcaccaga atgacgcggt aaccctcttc gcgcagggct ttacatgctt gcgcgccaga
     3241 gtagtcaaac tcacacgcct gaccgataac aatcgggccc gcacccagaa tcaggatact
     3301 ttttatatct gtacgttttg gcatggctct tttactcctg attacttagc ggttttacgg
     3361 tactgctcaa ttaactcgat aaagtggtcg aacaacggcg ctgcgtcgtg tggcccaggg
     3421 ctggcttccg ggtgaccctg gaagctgaaa gccggtttat cagtgcgatg aatgccctgt
     3481 aacgtaccgt cgaacaggga tttatgcgtg acacgcaggt ttgcaggtaa tgttgcttca
     3541 tccaccgcaa aaccgtggtt ctgggcggtg atcatcacca cgtttttctc cacatcttta
     3601 accggatggt tgccgccgtg gtgaccaaat ttcattttga cagtcttcgc accgctcgcc
     3661 agcgccagca gctgatgacc gaggcagatg ccgaataccg gaatatcggt ttcgaggaat
     3721 ttctggatgg cggtaatggc gtaatcgcac ggggccgggt cgccaggacc gttggagagg
     3781 aagatgccgt ctggattcat tttcagcaca tcttccgcag aagtttgcgc cggaacgatg
     3841 gtcaggcgac agcctctatc caccagcatc cgcaggatgt tgcgcttggc accaaaatca
     3901 taagccacga cgtggaacgg cagctcgtct tcttttttcg cttctggcag gccgccggtc
     3961 aacgtccagc tcccttgtgt ccagctatag gcttctgcgg tggtcacttc ttttgccaga
     4021 tccatgccat tcagacctgg gaacgcgcgg gctttttcta acgccaacgc cgcatccggg
     4081 ttatcgcctg cgataatgca gccattctgt gcgcctttct cgcgcagtaa acgcgtcagc
     4141 ttacgggtat cgatatcggc aatcgccacg atgttatggc gcttcaggta agaagagagg
     4201 tcttcggtat tacggaagtt gctggcaatc agcggcaggt cgcgaatcac cagaccttgt
     4261 gcatgtacct gagaagattc ttcatcggcg tcattagtgc cgacattgcc aatatgggga
     4321 taagtaagag taacgatttg acgagaatag gaaggatcag tgaggatttc ttgataaccg
     4381 gtcattgaag tattgaaaac gacttcccca accgccgaac ctgttgcccc tatggcccga
     4441 ccgtgaaact gggttccgtc ttccagaacc aatagcgctg acttaatcaa aacaccctcc
     4501 agagaatatt cactcacttt atttgcatat taattcacaa tgatgacgta aatcaatgca
     4561 aatctgctta ccgacgaatt tctggcaaac ggcggcattc tggagatatg ggcgctaaaa
     4621 gtcaacttaa tggcgggatt ttttatatta ttttgtggct catgcatgtt ttacgggcat
     4681 taagcgacaa aaagatcata taaactgttc tggaaaacgc ttgcgcagca agaagattgc
     4741 atgaaataaa agcgagcagg gaaaagtgga ccaaatggtc aaattttaca ttaaaacaac
     4801 aaaaacagaa gacaaaacat gtaatttttg gcacttatag acaatttaaa aacataacac
     4861 taaaaataaa agggccaaaa attaaagccc tttataatca ataaattaaa tgtgttattt
     4921 ttgcaccata acaaatattt tgtggttaca aactattgag atcaagcaca tctcgcatat
     4981 caaaaagacc actttcctta ccactcaacc aaaaagccga tcttaccgcg ccgttagcaa
     5041 atgtcatgcg gctggacgcc ttatgggtga tctccagacg ctcgccaata tcggcaaaca
     5101 tcgcggtatg ttcgccaacg atgtcacctg cacgcacggt ggcaaaacca atggtgccag
     5161 gcacacgttc accggtgtgg ctttcacgac tgtagaccgc gcaatctttc agatctttat
     5221 caagggcgtg ggcgatcgcc tctcccattg ccagtgcggt gcctgacggc gtatcaactt
     5281 tatgtctatg atgtgcttca ataatttcga tatcggtgta gtcacccatc actttggctg
     5341 ctttctccag cagcttaagc atgacgttaa cgccaacgct aaaattggcg gcaaagacaa
     5401 tcgcaatatc ggcggcggcg tcacgaatcg cctgtttacc ggcttcgtca aaccccgtag
     5461 tgccgatcac catccctttg ccatgctggc gacaaaaagc gagatggttc agcgtacctt
     5521 ccggacgggt aaaatcgata aacacatcaa aatcatcttt taccgcatcg aggctgcttt
     5581 gcacggtaac gcctgttttc cctgcaccag ccagctcacc agcgtcgctg cccagtaaag
     5641 aagatccttc gcgctccagc gccgcgccca gctgcacgcc ttctaatgcc agcgccgcct
     5701 gaatcaactg gcggcccata cgccccccgg ctcccgcgat ggcaacgcgg atgtttgcat
     5761 catgcatagc tattctcttt tgttaatttg catagaccgt tttcagagta accagcgcat
     5821 cgctacgccg ccagccaaaa acgctgataa ttagaaatta atgataaaca gggagggata
     5881 tcagtgaaag gcatgagtcg atgaatgact gcatgccgat aacatgtgac aggttacgac
     5941 gccagagcca gcacctcagc cacccactgc tggaagcctt tcacatccag atccaatgcc
     6001 acctttacat tggctggttt gcccaggcaa ccgtcgatat caaccaccgt cgtgcctgag
     6061 gtaaattcgc cctgagtttc cactgccaca aaacacggtt tgagagtgaa caattccggg
     6121 cgcaccagca aggcaatagc gcaaagatcg tgcatacgca gtccactttg catactgccg
     6181 ctacggtagt ggctaaacag ggcgtggagc atttttccgg tgcgattcaa ctccggcaaa
     6241 gtagcgagat agtcaggggt taatattgcc tgattggtga catccagacc gcacatgacg
     6301 atttcaatgc cgctacggaa gacacaggca gccgcttctg gatcggcagc gatattaaac
     6361 tcggcgtttg gtgtgcagtt gccgcgacca gcagaaccgc ccatgatcac cagacgacga
     6421 atatacggtt tacattccgg gcattgtgaa agtaacagcg caatattggt taacgggccg
     6481 atggccacca gggtaacggg ctctggtgca cgcatcaggg catcccgaat cgccagaaac
     6541 gctggtatcc cgagcggctt tcggttgtgc tcaacaaagt cgtagccagc cattcccgat
     6601 tcgccgtgca cagatgccgc atcacgcggt gcgcgtacca gcggcacagc ggctccctgg
     6661 gcgagcggaa tctccgcatt ccagaaatgc agcagttgca gggcgttgcg ggtggttttc
     6721 tcaaccgaga cattacccgc gacggtggtc atcagttgca ggtcgagttc gggtgcaaaa
     6781 atcgcggcgg caatggcgac ggcatcgtca atgccggggt cagtatcgag gaagataggt
     6841 aaacgcatgt tttctccata aaaaatgccg gtaacaagac cggcattttc gcataactta
     6901 ggctgctaat gacttaatcg acttcacgaa tatcgacacg cagctctttc ggcacttcga
     6961 aaacaatgtt ttcttcacgg ccttccagcg gaatggcttc accaccgccc agctgctgca
     7021 aacgtgccac cacattctgc accagaatat ccggagccga tgcgcccgca gtcacgccga
     7081 cgcatttaac ctctttcacc cactcttcct ggatgtcttt cgcatcgtca atcaaaaacg
     7141 cgcgtttgcc catacgctgg gccagctccg ccagacggtt ggagttggag gagtttttcg
     7201 aaccgaccac caacacaact tccgcctgtt ctgccagggc gcgtaccgct tcctgacggt
     7261 tagtcgtggc gtagcagatg tcatctttgc gcggaccgac aattttcggg aagcgtttac
     7321 gcagcgcgtc gatcacatca gacgtgtcat ccaccgacag cgtggtctgg gtcataaagg
     7381 agagcttctc ttcgtttttg accgtcagtt tccacacatc gtccggcgat tcgaccagat
     7441 acattccccc ttccgggtta ctgtactggc ccattgtccc ttccacttcc gggtgcccgg
     7501 cgtgaccgat gagaatagat tcttcgccac ggcgactggc gcgggcgact tccatatgca
     7561 ctttggtcac cagcggacag gtcgcgtcaa ataccgtcaa atcgcgactt tttgcttcgt
     7621 tacgtaccgc ctgagaaaca ccgtgtgcgg agaaaatcag gatcgcgccg tccggtactt
     7681 cgctaatctg ctcaataaag atagccccac gctcacgcaa gctatcgacc acatagcggt
     7741 tatgtaccac ttcgtgacgg acatatatcg gtgcgccgta aatggccagc gcgttttcaa
     7801 caatgctgat agcgcggtct accccggcac aaaaaccacg cgggttggcc aacaggatct
     7861 gcatgttacg cctccaatgc cggatcgatt tccagcactt caatatcaaa atgaacggtc
     7921 tgcccggcca gcggatggtt gaaatcaacg gtaatggagt cgccgttaat ttcgcggatc
     7981 acgccaggca tctcactgcc atccattgcg gtaaaaagca tgattgcgcc aatttctggc
     8041 tcgcctgcat ccataaattc acggcgggag aagtactgaa tcaggtccgg tgacggcacg
     8101 ccaaacgccg catctggctc caacgagaag gtggttttat cgcccacttt cagccccaac
     8161 aggtgttgct ccagcccttc agaaagagaa gcatcaccca ggcggaacag cgccggttta
     8221 ccgttgttgc gggtagactc ggcggtggtg ccatcgtcga gttttagcgt gaagtgcacc
     8281 aggacggcgc tattgctctg tacagattca gacatgcagg tttgctctta tatttgagga
     8341 tttttgccgg atgcggcgta aacgccttat ccggcagggt ttattattgt tttttcgctc
     8401 tagaaggcaa aaaaccttcc agcacaatca gtgccgcacc gacacagatg gcagtatcgg
     8461 caaggttgaa ggtggcgaag tgccagtcgc cgacgtagaa gtcgatcata tcgacaacga
     8521 agccgtgcca caggcggtcg aacaggttgc ccagcgcgcc gccaataatc agcgcgtaag
     8581 cgatattgtt tagcttctgc gtggccttcg agcgatacat catcactgcc aggatcacgc
     8641 taataccaat cgcaataccg gcaaagaacc aacgctgcca gccgccgcta tcggcaagga
     8701 aactaaacgc cgcgccatag ttacgcgcat aatgcagatt aagcgacggg aacagcggga
     8761 ccgtatcccc cagagcaaag ttctggagga tcaggtattt gctgcccaga tcgataatca
     8821 gcacgactac caccagccac agccagcgta gccctgttga acagatcgat tgactcatca
     8881 ggcaaactta cgtttttcac cgtcaccggc gacgttgctg acacagcggc cgcagatttc
     8941 tgcgtgttcc gccaccttgc cgacatcctg ggtgtagtgc cagcagcgtg ggcacttctc
     9001 accttcggct ttactcaacg cgactttcag ccctttgagt acttcgctct gctgagcatc
     9061 agcaggtgcg tcgtgatagt ctgcaacggt agcgccggag gtcaacagga caaatcgtaa
     9121 ttcatcgccc agcgcggtca gtttcgccgc cagttccggt tctgcataca aggttactgc
     9181 cgcttccagc gagccaccca ctttcttgtc ggcacgcgct tgctcaatga ctttgttcac
     9241 ttcgccacgc actttcaaca gctcgtccca gaacgcatcg ttcatcgctt cgctgtctgc
     9301 caggccaaac aggccttcgt accactcacc ggtgaagacg tatttttcac gttcgcccgg
     9361 caggtagccc cacacttcat cagcggtgaa ggagaggatt ggtgccatcc agcgcaccag
     9421 cgcttctgcg atgtgataca gcgcagtctg gcagctacga cgcgccacac tgtccgcttt
     9481 ggcggtgtac tgacggtctt tgatgatgtc gaggtagaag gaacccatct caacggagca
     9541 gaagcgcatc agacgctgta ccacttcgtg gaaatcgtat gcttcgtacg ccttgaggat
     9601 gtcttcctgt gccgctttcg cacaacctac ggcccagcga tccagtacca ccatctcttc
     9661 cggtttcacc atatcttttg ctggatcaaa accgttcagg tttgccagca ggaagcgcgc
     9721 ggtgttacgg atacgacgat agctatcggc agcacgtttc aggatctcgt cagaaacggc
     9781 catttcaccg gtgtagtcgg ttgatgccac ccacagacgc agaatatccg cgcccagttt
     9841 gttcatcaca tcctgcggcg aaacggtatt gccgatggat ttagacatct tgcggccctg
     9901 accatccacg gtaaagccgt gggtcagtac ctgacgatac ggcgctttgc ctttcatcgc
     9961 ggtggagatc attagggaag acatgaacca accacggtgc tggtcagaac cttccagata
    10021 catgtccgct gcatgaccgg caaattccgg acgcacgtca acaacagaag agtgggtaga
    10081 tccggagtca aaccatacat ccaatgtgtc cggcactttc acgtactgat cagcttcatc
    10141 gccgaggatc tctttcgcat caagatccca ccacgcctgg atgccgtcaa cttcaacgcg
    10201 ttttgccact tcttccatta gttcgagagt acgcggatgc agctcttccg tgtctttgtg
    10261 cacgaacagt gacatcggta cgccccaggt gcgctgacgg gagatacacc agtcaggacg
    10321 gttagcaacc atcgactcga tacgcgcctg gccccagtcc gggatccact gcacgccttt
    10381 gatctctttc agtgactgcg cacgcagacc tttctgatcc atgctgacga accactgcgg
    10441 cgtcgcgcgg aagatgatcg gcgttttgtg acgccagcag cacggatagc tgtgctgcat
    10501 tttctcaacg tgcagcagcg cgcctttttc ctgcagcagc gcaacgacga tgtcgttcgc
    10561 tttgaagacg ttcacgccat ccagcgtcgg ataagtgccc ggcagataag tgccgtccgg
    10621 gccaaccggg ttagcggttt ccaggccgta tttctgaccg atcacatagt cgtccgggcc
    10681 gtggccaggc gcggtgtgaa cggcaccggt accggcatcc agggtaacgt gatcgccgag
    10741 gattgccgga acgtcgaagc ccataaacgg atgggtaaag cgcagcaact caagctccgc
    10801 accttttacc gtgccgagaa tggtgtaatc ggtcacgccg atacgctgca ttacgctttc
    10861 aaccagatct ttcgccagaa tcacggcctg accgtcgatc tgcaccagcg catagtcgaa
    10921 atcaggtgca atagagattg cgcggttcgc aggcagagtc cacggcgtag tggtccagat
    10981 caccagcgag attgggccgt taacgttgct tacggcaaat tttgctttca gtgcatcctg
    11041 atcgaccgcc tgaaaagcaa cgtcgatgga cggagaagtt ttgtcgtaat actcaacttc
    11101 cgcttccgcc agcgcagaac ggcagtcaac gcaccagtgt accggcttcg cgcctttgtg
    11161 caggtgaccg ttgccgatga ttttgcccag cgcgcggatg atgttggctt cagttttgaa
    11221 gtccatggtc aggtacgggt gcgaccagtc gcccagcacg cccagacgga taaagtcttt
    11281 gcgttgaccg tcaacctggg tcgccgcgta ttcgcggcac ttggcgcgga actcggcggc
    11341 ggtgaatttc tcacccggct taccgtattc ttgctctact ttcagctcga tcggcagacc
    11401 gtggcagtcc cagccaggca catacggcga gtcataaccg gaaagccctt tggacttcac
    11461 gataatgtct ttcagaatct tgttaaccga gtgaccaata tgaatgctgc cattcgcata
    11521 aggagggcca tcatgcagaa tgaaggtttt tttgcctttt ttagccgcac ggatgatgcc
    11581 gtacagatca tcatcagtcc aacgcgccag cattcccggt tcgcgcttgg cgagatcgcc
    11641 acgcatcggg aaccctgttt ccggcaaatt cagggttgat ttatagtcac tcatcagatt
    11701 ctcggttccg tgtttcggtt tgattacata acaggcttaa gccggttttg ttagcccaaa
    11761 aaattcgcgg gcggttaatt catcacgcgc aatctgcgct ttcagttcgt ccagcgacgc
    11821 aaatcgctgc tcattgcgta tttttttacg cagcactact tgtatatggc gaccgtaaag
    11881 gtccattgca acatctaaca aatgcacttc cagctgctgg cgaataccgg caaccgttgg
    11941 gcgtgttccg atgtttgcca cgccgggtaa cggcttttca ccgaggccca gcacttctac
    12001 cgcataaacc cctttcaccg gggaaacctg acggcgtagc ggtacattcg ccgtcgggaa
    12061 acctatagtg cgccctaatt catcaccgtg gactacacgc ccggagatgg caaacgggtg
    12121 ccccagtaaa ctttctgcca gagccagatt gtcatccgcc agcgcctgac gcacagcggt
    12181 gctgctaata cgcacgccac cttcgcaaaa agtttgcgta ctagtgatat cgaagccgta
    12241 ttccatgcca gctttctgta ataacaagaa atcgccttca cgaccagcgc caaagcggaa
    12301 atcatcccct acggcaagaa attttacgcg caaatgcttc accagaagat cgctgatgaa
    12361 attttgcgcg gttaacgccg cgaaacgcct gtcgaaacgc acgcacagca cgtaatcaac
    12421 gccacactct gcaaggtaac gcagtttttc ccgcagccgg gtcagtcttg ccggggcttt
    12481 atcggtagca aacagttcca gtggttgagg ttcaaaaagc atcaccatca ccggtaagtt
    12541 gcgcttgcgc ccttcttcct gcaagccctg taacagcgcg cgatgaccgc gatgcacgcc
    12601 gtcgaaatta ccaatagtca gcacacaccc ttcttgcggg gcctggctga gattatgtat
    12661 gccgcgtatc agcttcatgt ctggctcaaa acagtgaaaa tcgtccgagt ataccttgta
    12721 cagcggtcaa ggttaaccgg cgattgagta ccgaaatcag aaagaagtgg cttttcattg
    12781 ccatggcgca aatcacggga agaaagtgac cgcctgctgc aatttttatc gcggaaaagc
    12841 tgtattcaca ccccgcaagc tggtagaatc ctgcgccatc actacgtaac gagtgccggc
    12901 acattaacgg cgcttatttg cacaaatcca ttgacaaaag aaggctaaaa gggcatattc
    12961 ctcggccttt gaattgtcca tatagaacac atttgggagt tggaccttgg ctaatatcaa
    13021 atcagctaag aagcgcgcca ttcagtctga aaaggctcgt aagcacaacg caagccgtcg
    13081 ctctatgatg cgtactttca tcaagaaagt atacgcagct atcgaagctg gcgacaaagc
    13141 tgctgcacag aaagcattta acgaaatgca accgatcgtg gaccgtcagg ctgctaaagg
    13201 tctgatccac aaaaacaaag ctgcacgtca taaggctaac ctgactgcac agatcaacaa
    13261 actggcttaa tcgccaattt gctgaagctt tgtgaaaaag cccgcgcaag cgggtttttt
    13321 tatgcctgct gcttttatga tgcgtgagag aacacactac cggttgccag atagtcaaaa
    13381 gatgctggct tttgcagaca tgccgttaca ctttctgaac tcttcgtggc ttaagaatcg
    13441 taaaaccatc ggctgataca ttctgaacaa ga
//
LOCUS       DAJVUN010000113        13276 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.113, whole genome shotgun sequence.
ACCESSION   DAJVUN010000113 DAJVUN010000000
VERSION     DAJVUN010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13276
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.113"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..275
                     /locus_tag="OQQ76_002730"
     CDS             <1..275
                     /locus_tag="OQQ76_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HCS1969173.1"
                     /translation="IVVPLSTTRDHDKLNRGMHVEIASNVINGLQFFDQQIRWAKADL
                     VQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISLIN"
     gene            474..755
                     /gene="ppiC"
                     /locus_tag="OQQ76_002731"
     CDS             474..755
                     /gene="ppiC"
                     /locus_tag="OQQ76_002731"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004097481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HCS1969174.1"
                     /translation="MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSG
                     KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN"
     gene            complement(842..2317)
                     /gene="ilvC"
                     /locus_tag="OQQ76_002732"
     CDS             complement(842..2317)
                     /gene="ilvC"
                     /locus_tag="OQQ76_002732"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HCS1969175.1"
                     /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG
                     CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
                     VNLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR
                     LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET
                     GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
                     ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPE
                     GAVDNAQLRDVNEAIRCHAIEQVGKKLRGYMTDMKRIAVAG"
     gene            2467..3357
                     /gene="ilvY"
                     /locus_tag="OQQ76_002733"
     CDS             2467..3357
                     /gene="ilvY"
                     /locus_tag="OQQ76_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HCS1969176.1"
                     /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG
                     QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAA
                     YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM
                     LENLAVVLIAPALPCPVRNQVSSEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPM
                     IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA
                     QKKRLHEPLIEAFWKILPNH"
     gene            complement(3354..4898)
                     /gene="ilvA"
                     /locus_tag="OQQ76_002734"
     CDS             complement(3354..4898)
                     /gene="ilvA"
                     /locus_tag="OQQ76_002734"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HCS1969177.1"
                     /translation="MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL
                     DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAYGVITASAGNHAQGVAFSSARLG
                     VKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHP
                     MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA
                     CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD
                     LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHILSGANVNFHGLRYVSERCELG
                     EQREALLAVTIPEEKGSFLKFCQLLGGRAVTEFNYRFADAKNACIFVGVRLSRGLEER
                     KEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
                     LNTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNPAF
                     RFFLAG"
     gene            complement(4901..6751)
                     /gene="ilvD"
                     /locus_tag="OQQ76_002735"
     CDS             complement(4901..6751)
                     /gene="ilvD"
                     /locus_tag="OQQ76_002735"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HCS1969178.1"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFT
                     QFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
                     GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG
                     GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIG
                     ILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFS
                     QDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG
                     PAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC
                     ALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELA
                     ARREAQEARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG"
     gene            complement(6816..7745)
                     /gene="ilvE"
                     /locus_tag="OQQ76_002736"
     CDS             complement(6816..7745)
                     /gene="ilvE"
                     /locus_tag="OQQ76_002736"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HCS1969179.1"
                     /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD
                     SHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIF
                     VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAK
                     AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL
                     PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG
                     RCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ"
     gene            complement(7765..8028)
                     /gene="ilvM"
                     /locus_tag="OQQ76_002737"
     CDS             complement(7765..8028)
                     /gene="ilvM"
                     /locus_tag="OQQ76_002737"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HCS1969180.1"
                     /translation="MMQHQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQN
                     INIELTVASPRSVDLLFSQLNKLVDVAHVAICQSTTTSQQIRA"
     gene            complement(8025..9671)
                     /locus_tag="OQQ76_002738"
     CDS             complement(8025..9671)
                     /locus_tag="OQQ76_002738"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HCS1969181.1"
                     /translation="MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLC
                     RHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAP
                     FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVASSGRPGPVLVDIPKD
                     IQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALRE
                     FLATTKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR
                     VTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPELQQPLNINDWQQYC
                     AQLRDEHAWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPE
                     NFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI
                     VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL
                     DTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS"
     gene            complement(9674..9724)
                     /locus_tag="OQQ76_002739"
     CDS             complement(9674..9724)
                     /locus_tag="OQQ76_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969182.1"
                     /translation="MNNSTKFCFSTFSTGN"
     gene            complement(9810..9908)
                     /gene="ilvL"
                     /locus_tag="OQQ76_002740"
     CDS             complement(9810..9908)
                     /gene="ilvL"
                     /locus_tag="OQQ76_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilv operon leader peptide"
                     /protein_id="HCS1969183.1"
                     /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA"
     gene            10258..11778
                     /locus_tag="OQQ76_002741"
     CDS             10258..11778
                     /locus_tag="OQQ76_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418214.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HCS1969184.1"
                     /translation="MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKE
                     ARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLD
                     EYGLVGELALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVELINGEGCLIADHL
                     QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGP
                     PGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLT
                     AMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITY
                     PARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPRI
                     LSKAVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEET
                     LIHLGLSIRAWQRLLKVARTIADIDQFDIITRQHLQEAVSYRAIDRLLIHLQKLLT"
     gene            complement(11803..12141)
                     /gene="maoP"
                     /locus_tag="OQQ76_002742"
     CDS             complement(11803..12141)
                     /gene="maoP"
                     /locus_tag="OQQ76_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ori organization protein MaoP"
                     /protein_id="HCS1969185.1"
                     /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE
                     LDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVE
                     GAEDYTDSDD"
     gene            12260..13099
                     /gene="hdfR"
                     /locus_tag="OQQ76_002743"
     CDS             12260..13099
                     /gene="hdfR"
                     /locus_tag="OQQ76_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator HdfR"
                     /protein_id="HCS1969186.1"
                     /translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG
                     VNLFTRHRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLWEC
                     MLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL
                     LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQ
                     IAMLNGCTWLPVSWARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLD
                     EVY"
     gene            complement(13195..13270)
                     /locus_tag="OQQ76_002744"
     tRNA            complement(13195..13270)
                     /locus_tag="OQQ76_002744"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13235..13237),aa:Trp,seq:cca)
BASE COUNT         3076 a         3594 c         3441 g         3165 t
ORIGIN      
        1 gtatcgtcgt tccattatca accactcgcg atcatgacaa gttaaatcgt ggaatgcatg
       61 ttgaaatagc cagtaatgtt atcaatggcc tgcaattctt tgatcagcag attcgttggg
      121 ccaaagccga cctggtacaa caagtcagtc gaaaccgatt aaatagagca aggacttaca
      181 gagggtatct taatcaatgt ttgccacatg agttggttgc agacatacag agggcggtca
      241 tcaagtcaat caatgccata tcgctcataa attgacaata aaataaccat ccccgataat
      301 gactttgtag cccatagagg ccctaagttt tctccccttg agggacctgc gaagcccgga
      361 ttttccgggc ttttgccata tatgtaccag cccctccctg actgacaatt acgttagcat
      421 ctgcggatca tgctaaaatc gccgcctgac aattattcac tcaaggcacg atcatggcaa
      481 aaacagcagc agcactgcat atccttgtaa aagaagagaa actggctctg gatcttctcg
      541 agcagattaa gaacggtgcc gatttcggca agctggcgaa gaaacactcc atttgcccat
      601 caggcaaacg cggcggtgat ttaggtgaat tccgccaggg tcagatggtt ccggcgttcg
      661 ataaagttgt gttctcttgt ccggtactgg agccgaccgg cccgctgcac acccagttcg
      721 gttaccacat cattaaggtg ctgtaccgta actaatagca aggccttctc caggagaagg
      781 ccttgagtgt tttctccctc tccctgtggg agagggtcgg ggtgaggaca tcagcgcgca
      841 cttaacccgc aactgcaata cgtttcatat ccgtcatata gccgcgcagt ttcttaccta
      901 cctgctcaat cgcatggcag cgaatcgctt cgttcacatc acgcagttgc gcgttatcta
      961 ccgcaccttc cggaatagct ttacccagat cgcccggttg cagctctgcc ataaacggtt
     1021 tcagcaacgg cacacaagcg taagagaaca gatagttacc gtactcagcg gtatcagaga
     1081 taaccacgtt catttcgtac agacgcttac gggcgatggt gttggcaatc agcggcagct
     1141 cgtgcagtga ttcataatat gcagactctt caatgatgcc ggaatcgacc atggtttcaa
     1201 acgccagctc aacgcccgct ttcaccatcg cgatcatcag tacgccttta tcgaagtact
     1261 cctgctcgcc gattttgcct tcatactgcg gcgcggtttc gaaggcggtt ttgccggtct
     1321 cttcacgcca ggtcagcagt ttcttatcat cgttggccca gtccgccatc ataccggagg
     1381 agaattcgcc ggagatgatg tcgtccatat gtttctggaa caggggtgcc atgatctctt
     1441 tcagctgttc agacagcgcg taagcacgca gtttcgccgg gttagagaga cggtccatca
     1501 tcagggtgat gccgccctgc ttcagcgctt cggtgatggt ttcccaaccg aactgaatta
     1561 gtttttctgc gtatgccgga tcggtgccct cttccaccag cttgtcgaag cacagcagcg
     1621 agccagcctg caacataccg cacaggatgg tttgctcacc catcaggtca gatttcactt
     1681 ccgcaacgaa ggacgattcc agcacgcccg cacggtgacc accggttgct gccgcccatg
     1741 ctttagcgat cgccatgcct tcgcctttcg gatcgttttc cgggtgaacg gcaatcagcg
     1801 tcggtacgcc gaatccacgt ttgtactctt cacgcacttc ggtgccaggg catttcggcg
     1861 caaccatgac tacggtgatg tctttacgga tctgctcgcc cacttcgacg atgttgaaac
     1921 cgtgcgagta acccagcgcc gcgccgtctt tcatcagtgg ctgtacggtg cgcactacgt
     1981 cggagtgctg cttgtctggc gtcaggttaa ccaccagatc cgcctgcggg atcagttctt
     2041 cgtaagtgcc cactttaaaa ccgttttcgg tcgctttacg ccaggatgcg cgcttctcgg
     2101 caatcgcttc tttacgcaga gcgtaggaga tatcgagacc agaatcacgc atgttcaggc
     2161 cctggttcag cccctgtgcg ccacagccga cgataaccac ttttttaccc tgaaggtagc
     2221 tcgcgccgtc ggcgaattcg tcgcgcccca taaagcgaca tttgcccagc tgtgccagct
     2281 gctggcgcag gttcagtgta ttgaagtagt tagccatggt gattcctcgt gatgttgtgc
     2341 ttcttattgt tcggttcgcg tttgcgagat tgaattcact atatgacagg aaatttattg
     2401 cggaaattga tatattcaca acgtcacatt gcaatttctg caacgtcaac attgagggct
     2461 gctccattgg atttacgcga tctgaaaacc ttcctgcatc tggcggaaag ccgccatttt
     2521 ggccgcagcg cgcgggcgat gcacgttagc ccatccacgc tctcacggca gattcagcgc
     2581 ctggaagaag atcttggtca gccgctattt gtgcgcgata accgcacggt gacgctgact
     2641 gaagcgggcg aagagctgcg cgttttcgcc cagcaaacgc tgttgcagta tcagcagttg
     2701 cgccacacca tcgatcagca agggccgtcg ctctctggcg aattacatat cttctgctcg
     2761 gtgaccgctg cctacagcca tctgccaccg attctcgacc gcttccgcgc ggaacacccg
     2821 tcggtggaga tcaaactaac cactggtgat gcggcagatg cgatggaaaa ggtagtcact
     2881 ggcgaagcgg atctggcgat tgccgggaaa ccggagactc tgcccggcgc agtggcgttt
     2941 tcgatgctgg agaatctggc agtagtgctg attgcgcccg cgctgccctg cccggtgcgt
     3001 aaccaggttt cgtcagagaa gccggactgg tctacagtgc cgtttatcat ggccgatcag
     3061 ggaccggtac gccgccgcat tgaactgtgg tttcgacgca ataaaatcag caacccgatg
     3121 atttacgcca cggttggcgg gcatgaagcg atggtatcga tggtggcgct cggctgtggc
     3181 gtggcgctgt tgccggaagt agtgctggaa aacagccccg aaccggtgcg taaccgcgtg
     3241 atgattttag agcgcagcga tgaaaaaacg ccgtttgaac tgggcgtttg tgcgcagaaa
     3301 aagcggctgc atgagccgct gattgaggcg ttctggaaga ttttgccgaa ccattaaccc
     3361 gccaaaaaga acctgaacgc cggattattg gtttcgtcgt ggcaatcgta gcccagctca
     3421 tttagccggg tttcgaaatc cggttcatgg tcgccgagtt cgaacgccgc cagtacgcgc
     3481 ccgtagtcgg tgccatggct gcgatagtgg aacaaagaaa tgttccagtg cgtacccagc
     3541 gtgttgagga agcgcagcag cgcgcccggt gattccggga attcgaagct gtagaggcgt
     3601 tcctgcaacg gatgtgacgg acgcccgccg accatatagc gcacatgcaa cttcgccatt
     3661 tcgtcgtcgg agagatccac cacgctgtag ccgccgtcgt tgagcatctg caaaatttct
     3721 ttgcgctctt cgaggccgcg gctcaggcgc acgccgacaa agatgcaggc gtttttggca
     3781 tcggcaaaac ggtagttgaa ctcggtgacc gctcgcccgc caagcagttg gcagaatttg
     3841 aggaagctgc ctttttcttc cggaatggtc accgccaaca acgcttcacg ctgttcgccc
     3901 agttcgcagc gttccgagac gtagcgcagg ccgtggaagt tcacgttggc accggaaaga
     3961 atatgcgcca gccgttcgcc gcgaatgttg tgctgggcga tatatttttt cattcccgcc
     4021 agcgccagcg cgccagaggg ttccgccacc gcgcgcacat cttcgaataa atccttcatc
     4081 gccgcacaga tcgcatcact atcgacggtg atgatgtcgt cgagatactc ctggcataaa
     4141 cggaaggttt cgtcaccgat gcgttttacc gctacgcctt cagcaaatag ccctacgcgc
     4201 ggcagatcaa ccggatgacc cgcatccagc gctgctttca ggcaggcgga gtcttccgct
     4261 tctacggcga tcactttgat ttgtggcatc agttgtttga tcagcaccgc aacgcccgcc
     4321 gccagaccgc cgccgccgac tggcacaaat acgcggtcga gatgggcgtc ctgctggagc
     4381 agttccagcg ccagcgtgcc ttgcccggca atcaccatcg gatggtcgaa cggcggcacc
     4441 caggtgaacc cctgctgctg tgacagttcg atcgctttag ctttcgcttc gtcaaagttc
     4501 gcgccatgaa gcagcacttc gccgccgaat ccacgtaccg catcgacttt gatatcggcg
     4561 gtggcggttg gcataacgat cagggccttc acgcctaacc gcgcagaaga aaacgcgacg
     4621 ccctgcgcgt ggttacccgc agaagcagtg atcacgccgt acgctttttg ttcttccgtc
     4681 aggcccgcca tcatggcgta tgcgccgcgc agcttaaagc tgtgcactgg ctggcgatct
     4741 tcgcgcttca ccagaatgac gttatcaaga cgcgacgaca gtttttccat tttttgtagc
     4801 ggcgtaacct gcgctgcctc gtaaaccggc gcgcgcagca ctgctcttaa atattcggca
     4861 ccttccggag caccggacag gggttgcgag tcagccatta ttaacccccc agtttcgatt
     4921 tatcgcgcac cgcacctttg tcggcgctgg ttgccaggct ggcgtaggcg cgcagggcaa
     4981 aggaaacctg acgttcacgg tttttcggcg tccaggcttt gtcaccccga gcttcctgcg
     5041 cttcacgacg cgccgccagt tcggcatcgc ttacctgtaa ctgaatgcca cggttcggga
     5101 tgtcgatagc gatcaggtca ccatcttcaa tcagaccaat gctgccgccg cttgccgctt
     5161 ccggtgagac gtggccgatg gaaagaccag aggtgccgcc agagaaacga ccgtcggtga
     5221 tcagcgcaca ggctttaccg agacccattg atttcaggaa gctggttggg tagagcattt
     5281 cctgcatgcc agggccgcct ttcgggcctt catagcggat caccaccaca tcgcccgcga
     5341 caactttgcc accgaggatc gcttctaccg cgtcgtcctg gctttcgtac acttttgccg
     5401 ggccggtgaa tttgaggatg ctgtcatcga cgcccgcggt tttcacgatg cagccgtttt
     5461 cagcaaaatt accgtagagc accgccaggc cgccgtcttt gctgtaggcg tgttccagcg
     5521 agcggataca gccgtttgcg cgatcgtcgt ccagcgtatc ccaacggcaa tcttgcgaga
     5581 atgcctgggt ggtacggata cccgcagggc cggcgcggaa catatttttt accgcgtcat
     5641 cctgggtcag cataacgtcg tattgctcca gcgtttgcgg caacgtcagg ccgagcacgt
     5701 ttttcacatc acggttcagt aaccccgcgc gatccagttc gccgagaata ccgataacac
     5761 caccagcacg gtgaacatct tccatatggt atttctgggt gctcggcgca actttacaca
     5821 gctgtggaac cttgcgggaa agcttatcga tatcactcat ggtgaagtcg atttccgctt
     5881 cctgcgccgc cgccagcagg tgaagtacgg tgttagtcga tccacccatc gcgatatcca
     5941 gcgtcatggc gttttcaaac gccgccttac tggcgatatt acgcggcagt gcactttcgt
     6001 cgttttgctc gtaataacgt ttggtcaatt caacaatgcg tttaccagca ttaaggaaca
     6061 gctgcttacg gtccgcgtgg gttgccagca gcgagccgtt gcctggctgc gacaaaccca
     6121 gcgcttcggt caggcagttc attgagttag cggtaaacat cccggagcag gaaccgcagg
     6181 ttgggcaggc ggaacgttca acctgatcgc tctgggagtc agaaactttc gggtctgcgc
     6241 cctggatcat cgcatcaacc agatcgagtt tgattatctg atcggacagt ttggttttcc
     6301 cggcctccat cgggccgccg gaaacaaaga tcaccggaat attcaggcgc agggaagcca
     6361 tcagcatccc cggggtgatt ttgtcgcagt tagagatgca gaccatggcg tcggcgcagt
     6421 gggcgttgac catatactca acggaatcag cgatcagttc gcgagatgga agtgaataaa
     6481 gcatcccccc gtggcccatg gcaatcccat catccaccgc aatggtgttg aactctttgg
     6541 caacgccgcc agccgcttca atttgttcgg cgaccagttt accgagatcg cgcagatgga
     6601 cgtgacccgg tacaaattgg gtgaacgagt tcacaaccgc gataatcggc ttgccaaaat
     6661 cggcgtcggt cattccggtg gcgcgccaca gcgcacgagc acccgccata ttacgaccat
     6721 gagtggtggt ggcggaacgg tacttaggca tactttattt actcccagtg tctgtctcgt
     6781 aaatgggacg gtgcgtgccg tcccattttt tgtatttatt gattaacttg atctaaccag
     6841 ccccatttat cttcggtttc gccagtgaag aggccgaaga aggcttgctg aatgcgtttg
     6901 gtaaccgggc cacaacggcc ttcgccaacc tgaataccgt ctacgctgcg cactggcgtg
     6961 atttctgccg cagtaccgga cataaacact tcatccgcca ggtacaggga ttcgcgcgac
     7021 agcacctgct cacgcacttc aattcccagc tctttcgcca gtttgatgat ggcatcacgg
     7081 gtaatacccg gcagcgcgga tgaggtaaac ggtggggtga acagcacgcc gtctttcact
     7141 tcaaacaggt tttcacctgc gccttcagag atgtaaccgt tcacatccag cgcgatacct
     7201 tcctgataac cgtggcggcg cgcttcgcta cccaccagca gggaagagag gtagttacca
     7261 ccggcttttg ccgccgtcgg gatggtgttt ggtgctgcgc ggttccagga ggaaaccatc
     7321 gcatcgatcc cctgctccag cgcttctgcg cccaaatacg ctccccacgg gaaagcagcg
     7381 ataatcacgt cggttgagta tcccgctggc gggtttactc ccatgccaac atcaccgacg
     7441 aagatcagcg gacggatata ggcgctggtg agattatttt tgcggatcac gtcacgacaa
     7501 gcttccatca gctcatcaat gctctgcgaa accgggaagc gatagatttt ggcggagtca
     7561 tgcagacgct gcatatgctc acgatggcgg aatacaaccg gtcctttgtg cgagtcgtag
     7621 caacggatgc cttcaaaaac cgaagtgcca tagtgcagcg cgtgcgacat cacatgcacc
     7681 ttcgcgtctt cccagcgaac catctcccca ttgaaccaaa tgtaatcagc tttcttcgtg
     7741 gtcattttta tattcctttt gcgctcaggc gcggatttgt tgtgatgtgg ttgtgctctg
     7801 gcagatggca acgtgtgcga cgtccaccag tttatttaac tgactaaaca gtaagtcgac
     7861 cgaccgtggg ctggcaacgg tcaattcgat atttatattt tgtgcatcgc tggcggcggc
     7921 catattcatt gagcagacgt ggaaaccacg atgacgcacc acgcgtaaaa cacgttctaa
     7981 ggtttccgga ttgaagcgag ccgatacatt gacctgatgt tgcatcatga taatttctcc
     8041 aacatttctg aattactggc gccaggcggc accagcggcc agacgttctc aagttcgtcg
     8101 attgagacat gaagcaggta tggcccatca ctgttcagca tggtgtcgag tgccgcttca
     8161 acctggtctt tacgggtgat gtgttggcca gggatgccga aggcgctggc caacatgagg
     8221 aaatcggggt tatcagtaag ggtggtttcg ctgtatcgtt cctgaaaaaa cagttgctgc
     8281 cattgtcgaa ccatccctaa ccgttggtta tcgagtaaga cgattttcaa cggtaactgc
     8341 ttgcgtttta cggtgcccag ctcttgcaca ttcatcatga aagagccgtc accggagata
     8401 cagacgacgg tatcgttcgg tcgcgcgact tgtgcgccaa ccgccgctgg taaaccaaaa
     8461 cccatagtgc ctaagccgct ggaggtgatg aaattttccg ggcgagtgtg ggcgatgtgt
     8521 tgcgcagccc acatctggtg ctgccccaca tctgtggtca cgacgcaatc cgcaggttta
     8581 cgatccgaca gttgttttaa caacaacggc gcgtagattg cgtcgccggg atggtcgtaa
     8641 cgccaggcat gttcatcacg cagctgcgcg cagtattgct gccagtcatt gatatttaac
     8701 ggctgctgta attctggtaa cagagcattt aaatcacctt gtaatgccac atgtgcctga
     8761 cgcagcttgt tcatttctgc cgggtcgata tccatatgga taacgctggc gtgtggtgcg
     8821 aaggtgttca gtttgccggt cacccggtca tcaaaacgtg cacccacagc gatcagcaag
     8881 tcgcactcct gcaccgcgaa gttcgccgct ttggtgccat gcattcccag catgcccaga
     8941 tagtacggat aatctgcttc aactgcgccc agccctttca gcgtgcaggt ggcaggcatt
     9001 tttgtggtag cgagaaattc tcgtaaagca ggaactgcct gcgccatacc cacgccacca
     9061 ccaacgtaca gcatcggttt ttgcgctttt gccagcatct ggcgcgcttg ctcaacttcg
     9121 gcatgtggga aagtcacttc gttttcaacg gtggtgaacc acggttccag gtcaccgctg
     9181 gctagctgga tatcttttgg gatatcgacc agaaccggac caggacgacc tgagctggca
     9241 acgtcgaatg cttcagccat aatgcgcggc aactcttcca gcgactgcac cagaaagctg
     9301 tgcttggtac aggctaacga caatcccagg acatccactt cctgaaatgc atcagtgccg
     9361 ataaacggtg cggacacttg accggtgatg gcaacaacag ggatagaatc taacagtgcg
     9421 tccgcaagcc cggttatcag gttggttgcg cccggaccag acgtggcgat acatacgcca
     9481 gttttgccgg tagcacgggc ataaccgata gccgccattg ccgcaccctg ctcatgtcgg
     9541 cacagcaagt gctccacgcc gccgtcatac aatgcatcgt aaaccggcat aattgcgcca
     9601 cccggataac cgaaaacggt gttcacaccc tgtgcccgca acgcatgtac cacccactgt
     9661 gcgccattca tagttagttc cccgtgctga atgttgagaa acagaatttt gtgctgttat
     9721 tcattgtctg ctcctcggtt atgtttttaa ggtcaaaaaa aaccccggac ctttcggtgc
     9781 ggggggctta gttcgttaag gcttgatttc taagcctttc ctcgtccaag tgcagccccg
     9841 cacggtggga taataatcac caccacgcta atcacgacca ggctaatcac tcgtagaagg
     9901 gctgtcattt tgtcttttct tgcatcttgt tcgaaggaat gcctaaagag ttaccatagg
     9961 ttttgtaaat agtacaagat attttttggc cgatttttat gatgcgttta ataatttcaa
    10021 tataagttgt tgttttttaa aataaaatag tgagtaaaaa attcaatttc agtatgaatg
    10081 ttgttccctt cctcgtagtt catcctttgt ccgctgcatt tttgcgagca tcattccacc
    10141 gccagaacaa ctcaacttca cttgcacaaa taaacaggaa tcagccacta aaattcacga
    10201 attagcgggc tacagcagcg atatcttatg cacataatgg tgactcaagg agggcttatg
    10261 tcactgtcaa ttgttcatac ccgcgcagcc ctgggagtaa atgcgccccc gatcactgtt
    10321 gaggtacata tcagtaaagg tctacccggc ttaacgaagg tgggcttacc agaaacaacg
    10381 gtaaaagaag ctcgcgatcg cgtgcgcagc gccattatca atagcggata tgaatatccg
    10441 gcgaaaaaaa tcaccatcaa cctggctcca gctgatctgc caaaagaagg gggacgatat
    10501 gatttaccta tcgccattgc gttgctggcg gcctcagaac agcttacagc caataagtta
    10561 gatgaatatg gattagtcgg agaactggcg cttacaggcg ctctgcgtgg cgttcccggc
    10621 gcaatctcca gtacaactga agctattaag tcgggcagaa aaattatcgt cgcgaaagat
    10681 aacgaagatg aagtggagct aattaacggt gaaggatgcc tgatagccga tcatctgcaa
    10741 gctgtctgtg cgtttctgga aggtaagcac gctctcgaac gcccgaaacc aactgatgca
    10801 gtatcccggg cgctacaaca tgatctcagt gatgttatcg gtcaggaaca aggaaagcga
    10861 gggctggaaa ttaccgccgc tggcgggcac aaccttttac tgattgggcc gccgggaaca
    10921 ggtaaaacaa tgctcgccag ccgtattaat ggcctgttac cagatttaag caatgaagag
    10981 gcactggaga gtgctgcgat attaagtctg gtaaatgctg aatcagtaca aaaacaatgg
    11041 cggcagcgcc cgttccgctc acctcatcac agtgcatcgt taactgcgat ggtaggcggt
    11101 ggcgcaattc cagggcccgg tgaaatttcg ctggcgcata acggcgtgct ttttcttgat
    11161 gagttacctg aatttgaaag gcgtacactg gatgccttgc gagagccgat tgaatccggg
    11221 cagatccatc tttcacgcac gcgagcaaaa ataacctatc cagcccgttt ccagcttgtc
    11281 gcggcgatga atcccagccc taccggacat tatcagggaa accataaccg ctgcacacca
    11341 gagcaaacgc tgcgttatct caaccgactc tctggtccct ttctcgaccg cttcgatctc
    11401 tcactggaga tcccattacc gcctccccgt attttgagta aagcggtagt gccgggagaa
    11461 agcagcgcca ccgttaaaca acgcgtaatg gccgccagag agcgccaatt taagcggcag
    11521 aataaactga acgcctggct ggatagtccg gaaatacgcc aattctgcaa acttgagagc
    11581 gaagatgcga tgtggctgga agaaacgctg atccatctgg ggttatcgat tcgtgcctgg
    11641 cagcggttat tgaaagttgc acgaaccatt gctgatattg atcagtttga cattatcaca
    11701 cgtcaacatt tgcaggaggc agttagctat cgagcgattg accgtttgct catccatctg
    11761 cagaaactac tgacataaaa aaagggcatt tcgccctttt tattaatcgt cagaatcggt
    11821 gtagtcttca gcaccttcaa cctgcggttt accgccggaa agggtgtgaa aacgttttgg
    11881 acgcttaata cgcgtcatat acttggacca cacgcgttct gcttctgtca ctggctcacg
    11941 ttcgccacgg catactgcta cgaagagttt ctcttcctcg gtaaccggct cgcgtttgcc
    12001 aagatccaac tcattgaagg cataaccatg acgctcaagc agttgtgcct ctttgatggt
    12061 gaaatcacca tgacgagaga atccacgtgg ataatgttta ttgtcgaaat atcgattagt
    12121 cgtcgtaaag ctttccgcca tcctgcacgc tcctaattct ttgaccgagc tagttatggc
    12181 gcggagtatt agttacgctt gacagagtgt aaaacaaaac atttaaatca taacgacaaa
    12241 taattttgcg gagagcactg tggatacgga attgttaaaa actttcctgg aagttagccg
    12301 aacgcgtcac tttggtcgag cggctgaatc gctctatctg acccagtcag cagtgagctt
    12361 tcgaatcaga caactggaaa atcaactggg tgtgaacctt ttcacccgcc acagaaacaa
    12421 tatccgttta accgctgccg gtgaaaaact actgccttat gcagaaacgc tcatgagcac
    12481 ctggcaggcc gcccgcaagg aggtggcgca tacctcacga cataacgagt tttctatcgg
    12541 tgccagcgcc tcattgtggg aatgtatgct taatcagtgg ctgggacgtt tgtatcaaaa
    12601 tcaggatgcc catacaggct tacagttcga agcgcgaatt gcccaacggc agtctctggt
    12661 aaaacagctg catgaacgcc agcttgatct tcttattacc actgaagcgc ccaaaatgga
    12721 cgaatttagt agtcagttgc tgggatattt cactttagcg ctttatacca gtgccccttc
    12781 aaaactaaag ggagatctta attatctgcg acttgagtgg gggccagatt ttcaacagca
    12841 tgaggcaggt ttgatcggtg ctgacgaagt gcccattctg acaaccagtt ctgctgaact
    12901 ggcacagcaa cagattgcga tgcttaatgg ttgcacctgg ctacccgtca gctgggcgcg
    12961 taaaaaaggc ggcctgcata ccgttgtcga tagcacaaca ctttcacggc cgctttatgc
    13021 catatggctg caaaatagcg ataaaaatgc gttgattcgc gatcttttga aaattaacgt
    13081 gctggatgaa gtgtattaat atgaatggct ggcaaggatg ccggtagaag gatttacttc
    13141 ggagagggtt atttcagata aaaaaaatcc ttagctttcg ctaaggatga tttctggcag
    13201 gggcggagag actcgaactc ccaacacccg gttttggaga ccggtgctct accaattgaa
    13261 ctacgcccct aattag
//
LOCUS       DAJVUN010000114        13164 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.114, whole genome shotgun sequence.
ACCESSION   DAJVUN010000114 DAJVUN010000000
VERSION     DAJVUN010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13164
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.114"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            65..1834
                     /locus_tag="OQQ76_002745"
                     /pseudo
     CDS             65..1834
                     /locus_tag="OQQ76_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439272.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha amylase C-terminal domain-containing
                     protein"
     gene            2170..3147
                     /gene="csiD"
                     /locus_tag="OQQ76_002746"
     CDS             2170..3147
                     /gene="csiD"
                     /locus_tag="OQQ76_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation induced protein CsiD"
                     /protein_id="HCS1969187.1"
                     /translation="MNALIAVQNNAVDSGQDYSGFTLIPSAQSPRLLELTFTEQTTKQ
                     FLEQVAEWPVQALEYKSFLRFRVGKILDDLCANQLQPLLLKPLLNRAEGALLINAVGI
                     DDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH
                     NDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYFRHPLARRPMRFAAPP
                     SKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVP
                     VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYATHHYQTHQ"
     gene            3167..4435
                     /gene="lhgO"
                     /locus_tag="OQQ76_002747"
     CDS             3167..4435
                     /gene="lhgO"
                     /locus_tag="OQQ76_002747"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417146.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HCS1969188.1"
                     /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTG
                     HNSGVNHAGVYYTPGSLKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERM
                     RALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
                     RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFI
                     ICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKR
                     EGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLS
                     LSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSK
                     VQTLLASQSNPGRTLRATRSVDALHAAFNQ"
     gene            4458..5893
                     /gene="gabD"
                     /locus_tag="OQQ76_002748"
                     /pseudo
     CDS             4458..5893
                     /gene="gabD"
                     /locus_tag="OQQ76_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311549.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
     gene            5907..7173
                     /gene="gabT"
                     /locus_tag="OQQ76_002749"
                     /pseudo
     CDS             5907..7173
                     /gene="gabT"
                     /locus_tag="OQQ76_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417148.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
     gene            7411..8811
                     /gene="gabP"
                     /locus_tag="OQQ76_002750"
     CDS             7411..8811
                     /gene="gabP"
                     /locus_tag="OQQ76_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GABA permease"
                     /protein_id="HCS1969189.1"
                     /translation="MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG
                     PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW
                     VLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV
                     IAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAE
                     IVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV
                     LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP
                     YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE
                     GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTDLLAIGIICTVPIMAR
                     WNKLIMWQKTPVHNTR"
     gene            8832..9494
                     /gene="csiR"
                     /locus_tag="OQQ76_002751"
     CDS             8832..9494
                     /gene="csiR"
                     /locus_tag="OQQ76_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CsiR"
                     /protein_id="HCS1969190.1"
                     /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
                     EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGSDEWEA
                     EVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR
                     YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMA
                     GN"
     gene            complement(9495..9944)
                     /gene="kbp"
                     /locus_tag="OQQ76_002752"
     CDS             complement(9495..9944)
                     /gene="kbp"
                     /locus_tag="OQQ76_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium binding protein Kbp"
                     /protein_id="HCS1969191.1"
                     /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDAD
                     KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK
                     SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE"
     gene            complement(10028..10186)
                     /locus_tag="OQQ76_002753"
     CDS             complement(10028..10186)
                     /locus_tag="OQQ76_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HCS1969192.1"
                     /translation="MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIH
                     AFWVQTRD"
     gene            10369..10668
                     /locus_tag="OQQ76_002754"
     CDS             10369..10668
                     /locus_tag="OQQ76_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1969193.1"
                     /translation="MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL
                     TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP"
     gene            10678..11202
                     /gene="ygaP"
                     /locus_tag="OQQ76_002755"
     CDS             10678..11202
                     /gene="ygaP"
                     /locus_tag="OQQ76_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YgaP"
                     /protein_id="HCS1969194.1"
                     /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS
                     VLEQSGLPPKLRREQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKRAGLP
                     VAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG
                     MARLLDKMPWNQRA"
     gene            complement(11249..11653)
                     /gene="stpA"
                     /locus_tag="OQQ76_002756"
     CDS             complement(11249..11653)
                     /gene="stpA"
                     /locus_tag="OQQ76_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein StpA"
                     /protein_id="HCS1969195.1"
                     /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE
                     EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV
                     NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI"
     gene            12306..12755
                     /gene="alaE"
                     /locus_tag="OQQ76_002757"
     CDS             12306..12755
                     /gene="alaE"
                     /locus_tag="OQQ76_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-alanine exporter AlaE"
                     /protein_id="HCS1969196.1"
                     /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS
                     RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV
                     VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA"
     gene            complement(12792..13136)
                     /locus_tag="OQQ76_002758"
     CDS             complement(12792..13136)
                     /locus_tag="OQQ76_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaC family protein"
                     /protein_id="HCS1969197.1"
                     /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM
                     GRTALVIHPTLKERSSTLAEPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL
                     ERYLNGLFGEAS"
BASE COUNT         3300 a         3222 c         3344 g         3298 t
ORIGIN      
        1 agtattaaga ctatcactta tttaagtgat actggttgtc tggagattca gggggccagt
       61 ctagctggca gccgatgtat ataatattaa cgtgacgtca ccttccggac agcaagaaac
      121 atttaaaata ctaatcaatc cagaacatct acggcaaaca cttgagcgta aatctcttac
      181 tgctgttcag aaatcacaat gtgaaatcat tacccccaaa aaacctggcg aagcgattct
      241 tcatgctttt aatgccacct accagcaaat cagggaaaat atgtctgagt ttgcacgttg
      301 ccattatggg tatatacaaa tccctccagt gacaactttc cgcgccgacg gaccagaaac
      361 tcccgaagaa gaaaaaggtt actggtttta tgcttatcaa cccgaagatc tttgtaccat
      421 ccataaccca atgggagatt tgcaggattt tatcgcattg gttaaagatg ctaaaaaatt
      481 tggtatcgat atcattcctg attatacatt taactttatg ggaatcgggg gtagtggtaa
      541 aaatgacctg gattatccct ctgctgatat acgagcgaag atcagtaaag atatagaaag
      601 cggtatccct ggctattggc aaggtcaggt tttgattcca ttcattaaag atccagtaac
      661 aaaagaacgt aaacaaatcc atccagaaga tatacatctc actgcaaaag acttcgaagc
      721 aagtaaagat aacatctcta aggatgaatg ggaaaacctc catgcattaa aagaaaagcg
      781 tttaaatgga atgcctaaaa caacacccaa aagtggccag gttattatgt tgcaaaatca
      841 atacgttcga gaaatgcgaa aatatggcgt acgaggttta cgttatgatg cggcaaaaca
      901 ctcaaaacat gaacaaatag agaggtcgat aaccccaccg cttaaaaatt ataatgagcg
      961 gttacacaat actaatttat ttaacccaaa atatcaaaaa aaagccgtta tgaattacat
     1021 ggaatacctg gtaacttgtc agttggatga acaacaaatg tcatcactgc tttatgagag
     1081 agatgattta agtgccattg atttttcttt actcatgaaa acgataaaag ccttttcatt
     1141 tggtggagat ctccaaaccc ttgcatcaaa accgggttcc acaatctcaa gtatcccatc
     1201 agaaagacgg atattgatta acattaacca cgattttcct aacaatggta atcttttcaa
     1261 tgactttcta tttaaccatc aacaagatga acaattagca atggcatata tggccgctct
     1321 cccgttcagc agacctttag tttactggga tggccaagta ttaaaatcaa cgactgaaag
     1381 taaaaattat gatgggtcca cgcgtgtcgg cggtgaggcg tggcttaata aaggttgctc
     1441 tacctatcag cagctctaca atgaattcca cgcattatat atagataaag caggaatatg
     1501 gagcgcattt gagggtgtat ttgcaactaa aaacgttctg gcctttagtc gtggggattc
     1561 tgtgaacatt aatcactctc ctcatgatgg actagttata ataaataaag gaaacgaaga
     1621 agttgaaggt acctggccta acaaattgca acctggaata tacaaaaaca tggggagtaa
     1681 tagcgttaat attattatta ataatacccg aaaaattatc ccccctggta aagtatttac
     1741 gcttagaggc ggaactctaa atatcaatat tcctgggcgt agcgctcttc ttttagggaa
     1801 aacaggagaa ccgccgaact atctctattt ataatttaat gttatatctg ccccgataaa
     1861 acggggcaga taatatgttt agtttactaa cggtcatttt gcagtgaagc catttactgt
     1921 tttttatcga ccagataatc tgttctctaa tgttaactcc ccctaacctg ttgctttagt
     1981 tattcatttc ctgtctcact ttgccttaat accctacgtt aaatgttact aatttgttgt
     2041 ttttgatcac aataagaaaa caatatgtcg cttttgtgcg catttttcag aaatgtagat
     2101 atttttagat tatggctacg aaatgagcat cgccatgtca ccctacatct cataagagga
     2161 tcgcttctga tgaatgcact gatcgccgta caaaataacg ctgtcgattc aggccaggac
     2221 tatagcggat tcactctcat cccgtcggcg caatccccgc gtctgctgga actcaccttc
     2281 accgaacaga cgaccaaaca gtttctcgaa caggttgccg aatggcccgt gcaggcgctg
     2341 gagtacaaat cgtttctgcg ttttcgggta ggcaaaattc ttgacgatct gtgtgcgaat
     2401 cagctgcaac cattgctgtt gaagcccctg ctaaaccgtg ctgaaggtgc gctgttgatc
     2461 aatgcggtgg gtatcgatga tgtggcgcag gcagatgaga tggtgaagct ggcaacggcg
     2521 gtagcgcatc tgattggtcg ctcaaatttc gatgcgatga gcggtcagta ttacgcgcgt
     2581 ttcgtggtga aaaatgtcga taactcagac agctatctgc gtcagccgca ccgcgtgatg
     2641 gaactgcaca acgacggcac gtatgtcgaa gagatcaccg attacgtgct gatgatgaaa
     2701 atcgatgagc aaaacatgca gggtggaaat tcgttgctgc tgcatctcga tgactgggaa
     2761 catctggacc actatttccg ccatccactg gcgcgtcgcc cgatgcgctt tgccgcgccg
     2821 ccgagcaaaa acgtcagcaa agatgttttc catccagtgt tcgacgttga tcaacagggt
     2881 cgcccggtga tgcgctatat cgaccagttc gtccagccaa aagattttga agaaggcgtg
     2941 tggttgagcg agctttccga tgccattgaa accagcaaag gcattctttc tgtacccgtt
     3001 cccgttggca aattcctgtt gataaacaac ctgttctggc tgcacggtcg cgaccgcttt
     3061 actccgcacc cggatctgcg ccgtgaactg atgcgtcagc gtggctattt cgcttacgcc
     3121 actcaccact accagacgca tcagtaagcg caaaggaatt gagcggatgt atgattttgt
     3181 gattattggc ggcggcatca tcggcatgtc gaccgccatg caactgattg atgtttatcc
     3241 ggatgcccgc attgcgttgc tggaaaaaga gtccggcccg gcctgtcacc agacgggcca
     3301 caacagcggc gtgaaccatg ccggggtcta ttacacgccc ggcagcctga aggcgcagtt
     3361 ttgcctggcg ggaaaccgcg ccaccaaagc cttttgcgat caaaacgaca ttcgctatga
     3421 caactgcggc aagatgctga tcgccacgtc cgatctcgaa atggaacgga tgcgcgcgtt
     3481 gtgggaacgc acggcggcga acggtatcga gcgcgagtgg ttaaacgccg aggaactgcg
     3541 cgagcgcgaa ccgaatatca ccgggctcgg cggcattttt gtgccgtcca gcggcattgt
     3601 cagctatcgc gaagtcacag cggcaatggc aaaaatcttc caggccagag gcggtgagat
     3661 tatttataac gccgaagtca gcgccctcag tgagcataaa aacggcgtgg tcgtccgaac
     3721 ccgtcagggc ggcgaatatg aagcatcgac gctgattagc tgttccgggc tgatggctaa
     3781 ccggctggtg aaaatgctcg gcctcgaacc gggttttatt atctgcccgt tccgtggcga
     3841 gtatttccgc cttgcgccgg agcataacca gattgttaac catctgattt accccatccc
     3901 tgacccggca atgccgtttt tgggcgtgca tctcacccgc atgatcgacg gcagcgtgac
     3961 cgtcgggcca aacgcggtgc tggcttttaa acgcgaaggc tatcgcaagc gcgacttctc
     4021 atttagcgac acgctggaaa ttttaggctc gtcggggatt cgccgggtgc tgcaaaacca
     4081 tctacgctca ggactgggcg agatgaaaaa ctcgctgtgc aaaagcggct atctgcggct
     4141 ggtgcaaaag tattgtcccc ggctttcgtt aagcgatctc cagccctggc ccgccggtgt
     4201 gcgggcgcag gcggtatcgc cggacggcaa gctgattgac gattttctgt ttgtcaccac
     4261 cccgcgcacg atccacacct gcaatgcgcc ctccccggca gcgacatcag caattcctat
     4321 tggtgcgcat attgtcagca aggtacaaac gctgttggca agccagagta accccggacg
     4381 cacgctgcga gcgacacgta gtgtggatgc cttacacgcc gcatttaatc aataaccttt
     4441 gaaaacagga cgtaacaatg aaacttaacg acagtaactt attccgccag caggcgttga
     4501 ttaacgggga atggctggac gccaacaatg gcgggatcat cgacgtcacc aatccggcga
     4561 acggcgacaa gctgggtagc gtgccgaaaa tgggcgctga tgaaacccgc gccgctatcg
     4621 acgccgccaa ccgcgccctg cccgcctggc gtgcgctcac cgccaaagaa cgcgccaaca
     4681 ttctgcgcaa ctggttcaat ttgatgatgg agcatcagga cgatttagcg cgcctgatga
     4741 ccctcgaaca gggcaaacca ctggccgaag cgaaaggcga aatcagctac gctgcctctt
     4801 ttattgagtg gtttgccgaa gaaggcaaac gtatttatgg cgataccatt cccggtcatc
     4861 aggccgataa gcgcctgatt gttatcaagc agccgattgg cgttaccgca gctatcacgc
     4921 cgtggaactt cccggcggcg atgattaccc gtaaagccgg tccggcgctg gcggcaggct
     4981 gcaccatggt gctgaagccc gccagtcaga caccgttctc tgcgctggcg ctggcggagc
     5041 tggcgattcg cgcgggcatt ccggctggcg tgtttaacgt ggtcaccggt tcggcaggcg
     5101 cggtcggtaa tgaactgacc agcaacccgc tggtacgcaa actgtcgttt accggttcga
     5161 ccgaaattgg ccgacagtta atggaacagt gcgcgaaaga catcaaaaaa gtgtcgctgg
     5221 agctgggcgg caacgcgccg tttatcgtct ttgacgatgc cgatctcgat aaagccgtgg
     5281 aaggcgcgct ggcctcgaaa ttccgcaacg ccgggcaaac ctgcgtctgc gccaaccgtt
     5341 tggcgtgtat gaccgctttg ccgaaaaatt gcagcaggcg gtgagcaaac tgcacatcgg
     5401 cgacgggctg gataaaggcg tcaccatcgg gccgctgatc gatgaaaaag cggtagcaaa
     5461 agtggaagag catattgccg atgcgctgga gaaaggtgcg cgtgtggttt gcggcggtaa
     5521 agcggatgaa cgcggcggca acttcttcca gccgaccatt ctggtggacg tgccggccaa
     5581 cgccaaagtg tcgaaagaag agacgttcgg ccccctcgcc ccgctgttcc gctttaaaga
     5641 tgaagccgat gtgattgcgc aagccaatga caccgagttt ggccttgccg cctatttcta
     5701 cgcccgtgat ttaagccgcg tcttccgcgt gggcgaagcg ctggagtacg gcatcgtcgg
     5761 catcaatacc ggcattattt ccaatgaagt ggccccgttc ggcggcatca aagcctcggg
     5821 tctgggtcgt gaaggttcga agtatggcat cgaagattac ttagaaatca aatatatgtg
     5881 catcggtctt taactggaga atgcgaatga acagcaataa agagttaatg cagcgccgca
     5941 gtcaggcgat tccccgtggc gttgggcaaa tttacccgat tttcgctgac cgcgcggaaa
     6001 actgccgggt gtgggacgtt gaaggccgtg agtatcttga tttcgtgggc gggattgcgg
     6061 tgctcaatac cgggcacctg catccgaagg tggtggccgc ggtggaagcg cagttgaaaa
     6121 aactgtcgca cacctgcttc caggtgctgg cttacgagcc gtatctggag ctgtgcgaga
     6181 ttatgaatca gaaggtgccg ggcgatttcg ccaagaaaac gctgctggtt acgaccggtt
     6241 ccgaagcggt ggaaaacgcg gtaaaaatcg cccgcgccgc caccaaacgt agcggcacca
     6301 tcgcttttag cggcgcgtat cacgggcgca cgcattacac gctggcgctg accggcaagg
     6361 tgaatccgta ctctgcgggc atggggctga tgccgggtca tgtttatcgc gcgctttatc
     6421 cttgcccgct gcacggcata agcgaggatg acgctatcgc cagcatccac cggatcttca
     6481 aaaatgatgc cgcgccggaa gatatcgccg ccatcgtgat tgagccggtt cagggcgaag
     6541 gcggtttcta cgccgcgtcg ccagccttta tgcagcgttt acgcgctctg tgtgacgagc
     6601 acgggatcat gctgattgcc gatgaagtgc agagcggcgc ggggcgtacc ggcacgctgt
     6661 ttgcggtgga gcagatgggc gtggcgccgg atcttaccac ctttgcgaaa tcgatcgctg
     6721 gcgggcgtca ccgggcgcgc ggaagtgatg gacgctgttg caccgggcgg tctgggcggc
     6781 acctatgccg gtaacccgat tgcctgcgtg gctgcgctgg aagtgttgaa ggtgttcgag
     6841 caggaaaatc tgctgcaaaa agccaacgat ctggggcaga agctaaaaga cggattgttg
     6901 gcgatagccg aaaaacaccc ggagatcggc gacgtacgcg ggctgggagc gatgattgcc
     6961 atcgagctgt ttgaagatgg cgatcacagc aaaccggacg caaaactcac cgccgggatc
     7021 gtggcacgcg cccgcgataa gggcctgatt cttctctcct gcggcccgta ttacaacgtg
     7081 ctacgcatcc ttgtaccgct caccattgaa gacgctcaga tccgtcaggg tctggagatt
     7141 atcggtcagt gttttgatga ggcgaagcag tagcaccgcc cccatgcagg aggcgacgct
     7201 gcgcgtcttg tccggcctac gagaatccag gtcggataag gcgtttacgc cgcatccgac
     7261 aatctgtacg tgaacaggaa taaatctatg tcggccggat aatgcggagc cgctctccgg
     7321 caaaaagaat caataacaat taaacgcgtg acccggcgcg ggaaatgtcg gggcgctctc
     7381 ccaagtgaca cactttcgag aggattcagg atggggcaat catcgcaacc acatgagtta
     7441 ggcggcgggc tgaaatcacg ccacgtcacc atgttgtcta ttgccggtgt tatcggcgca
     7501 agtctgtttg tcggttccag cgtcgccatc gccgaagcgg gcccggcggt attactggcc
     7561 tatctgttcg ccgggctact ggtggttatg attatgcgga tgttggcgga aatggcggtt
     7621 gccacgcccg ataccggttc gttttccacc tatgccgata aagccattgg tcgctgggcg
     7681 ggctatacca tcggctggtt gtactggtgg ttttgggtac tggttatccc gctggaagcc
     7741 aacatcgccg ccatgatcct gcactcgtgg gttccaggca ttcccatctg gttattttcc
     7801 ctcgtcatta cccttgcctt aactggcagt aatttattaa gcgttaaaaa ctacggcgaa
     7861 tttgagttct ggctggcgct gtgcaaagtc atcgctatcc tggcctttat tttccttggt
     7921 gcagtcgcaa ttagcggttt ttacccttat gccgaagtga gcgggatctc aagattgtgg
     7981 gatagcggcg gctttatgcc caacggcttc ggtgcggtat taagcgcgat gttgatcacc
     8041 atgttctcgt ttatgggcgc agaaattgtc accattgccg ccgcggaatc cgacacgccg
     8101 gaaaaacata ttgtccgcgc cactaactcg gttatctggc gtatttctat cttctatttg
     8161 tgctctattt ttgtcgtcgt ggcattaatt ccgtggaata tgcccggact aaaagccgtc
     8221 ggttcttatc gctcggtact ggaattgctc aatattcccc atgcgaaatt aatcatggac
     8281 tgtgtgatat tactttccgt aaccagctgc ctgaactcgg cgctgtatac cgcttccagg
     8341 atgctctact ccttaagccg tcgcggagat gcgcctgcgg taatgggtaa aatcaaccgc
     8401 agtaaaaccc cgtacgtggc ggtgttactc tccaccggcg cggcattctt aacggtggtg
     8461 gtgaactatt acgcgcctgc gaaggtattt aaatttctga tcgacagctc cggcgctatc
     8521 gccctgctgg tttatttagt catcgccgtt tcacagttgc ggatgcgcaa aattctgcga
     8581 gcagaaggaa gcgaaattcg cttgcgcatg tggctttatc cctggctcac ctggctggtc
     8641 atcggcttta ttacctttgt gttggtagtg atgctattcc gcccggcgca acagttagaa
     8701 gtgatctcca ccgacttatt agcaataggg attatctgta ccgtgccaat tatggcgcgc
     8761 tggaataagc tgataatgtg gcaaaaaaca cccgttcata atacgcgctg ataataatca
     8821 ggagtcacac catgaccatt acgtctctgg atggctatcg ctggctgaag aacgatatta
     8881 ttcgcggtaa ttttcaaccg gatgaaaaat tacggatgag tttgctgaca tcgcgttatg
     8941 cacttggcgt tgggccgttg cgggaagcac tttctcaact ggtggcggaa cggctggtca
     9001 cggtggtgaa tcaaaaaggg tatcgggtgg cgtctatgtc agagcaggag ctgctcgata
     9061 ttttcgatgc ccgcgccaat atggaagcga tgttagtgag tctggcgatt gcccgcggta
     9121 gcgatgagtg ggaggcagaa gttctcgcaa aagcgcatct gctcagtaag ctggaagcct
     9181 gtgacgccag cgagaaaatg cttgatgagt gggatctgcg tcatcaggcg tttcatacag
     9241 caattgtggc gggctgtggt tctcactatt tgctgcaaat gcgtgaacgg ttgtttgatc
     9301 tggcggcgcg ctatcgattt atctggctgc ggcgaacggt gctttcggta gaaatgctgg
     9361 aggataaaca cgatcagcac cagaccctga ctgcggcggt actggcgcga gataccgcgc
     9421 gcgccagtga gttaatgcgc cagcatttac tgacgccaat tcccattatc cagcaggcga
     9481 tggctggcaa ttaactactc ttccggaata cgcaacactt gccccggata aattttatcc
     9541 gggcttttta gcatcggttt attcgcttcg aagattttat tgtacagatt agcgttaccg
     9601 tagacctgtt tggaaatggc actcagagtg tcgccagact taacggtata aaactggctg
     9661 gcagtggctg gtgtcgccgt tttcacctga tcatcaacac tggcaatacc ggaaatattc
     9721 cccaccgcaa caaggatttt ctccttcgcc tcctgactca ggccgtcacc agtgaccgtc
     9781 gctttgccgt cggcaatttg aatgttcact ttatcggcat caggtatacc ggttttgctc
     9841 agatgctcct gcaccttctt cgcctgatcg tctttatcgt gctgacctgt aaccgcgtcc
     9901 cagagttttt ctccggcatc tttcacaaaa ttgaacagac ccatagctac ctcattcgtt
     9961 aacggaaaca ctcagaaagt gtagcagagg aacgcggcgc gttaacgccg cgggggggag
    10021 cacaggttta atcgcgggtt tgcacccaga acgcgtgaat caaaccgggg atatacccaa
    10081 gcagtgtcag cagaatatta ataatgaacg cccaaccgaa ccctttaccg agcagcacgc
    10141 cgagcggcgg cagaatgatg gtgatgacga ttctccagaa acccatatgt actccctata
    10201 agaaaattac tcattgttta aaaagagatt ttatctctta agcgtagtaa ttttagcgga
    10261 gcctgccagt ttcagcttac gcttttactc tcatttacgc tgctgaggct ggtatatgtt
    10321 gcatttttag tttagagttt acttaattta gaaaatactt aaataaatat gactgaactc
    10381 gcgcaattac aggccagtgc cgaacaggca gcggccttat tgaaagcaat gagccatcct
    10441 aaacgattgc tgattctgtg catgcttagc ggttcccccg gcaccagcgc gggagagctg
    10501 acgcgcatta ccggactgag tgcctctgcg acatcacagc atctcgctcg tatgcgggac
    10561 gaagggctta tcgacagcca acgggatgcc caacgcattc tatattccat taaaaatgag
    10621 gcggtaaatg ctattatcgc caccctgaaa aatgtctatt gtccgtaagg agtcactatg
    10681 gctttgacaa ccatttcgcc gcatgatgca caagaattaa tcgcacgcgg cgcaaagtta
    10741 atcgatattc gtgacgctga tgaatatctt cgtgaacata ttcctgaagc agatctggct
    10801 ccattatccg tgctggaaca gtcaggtctt ccacctaaat tacgtcgcga gcaaattata
    10861 ttccactgcc aggcaggtaa acgcaccagt aataacgccg ataaattagc agcgattgcc
    10921 gcccccgcag aaatattttt actcgaagat gggattgatg gctggaaaag agctggattg
    10981 ccagtagcgg taaataaatc tcaacccttg ccgttaatgc gccaggtgca gatcgctgcg
    11041 ggtggtttaa tattaatcgg cgttgtactg ggttataccg taaatagcgg tttcttctta
    11101 ttaagtggct ttgttggtgc cgggttactg tttgcaggaa tcagcggttt ttgtggaatg
    11161 gcaaggttgt tagataagat gccgtggaac caacgagctt gagaagcgac gccggacgcg
    11221 ccctagcagc gacatccggc ctcagtaatt agatcaggaa atcgtcgaga gatttacctt
    11281 ctgccagcgc ctgagcaatt ggcttcggtg tacggccctg accggtccag gtcttagttt
    11341 caccgttaac atcagtgaat ttatatttcg ccggacgcgg ctggcgtttt ttaccagcac
    11401 gtggtgcagc agcagagcta ttacccaata actcttccgg gttaattccg tcagctttca
    11461 tcagctccag ccaggtgcta attttttcct gacgctcagc cagttcacgc tgctgctgtt
    11521 cttcttcttc acgtctttct ttagtgacaa ccctgaattt ttcgagcatt tcttcaagaa
    11581 cgtcaatgga gaattcgcga gccatcgcac ggagggttcg aatgttattt aaactttgta
    11641 acattacgga cataataaag aaaacctttt aacgccaaaa caaaaaagta tttcgtcgcg
    11701 tagtgtaagc gatcacttat tatatttcca caaaatttaa tctatttaca gtcctgcgcg
    11761 agattatttc agctgttatt ttctgaaact ctcagaataa tttcaagatt atatattagc
    11821 cattttgatg agtaatttag gttattggtg aacagagtgg cgctctctgc tcgctaactc
    11881 cgcaagcctg ataaaatcga agtgaataaa aatgcaatat aacagaataa aagaaaacac
    11941 ccctcactgg tgctttctgc tgttaatgta cattttctgg catcaaaaat gctgtaaatg
    12001 acccggtcac gacaaacacc gaattctcta cgcttatagc gttacctcac ccccaaactt
    12061 aaaggcaagg tcatatccaa ttgatttgat tgaaaataaa tcatatcggc atgtaaaaat
    12121 ccacaatgta caaaaaacga gccgttacgg aatattttat ctacaaaaac tgactaaata
    12181 aaagtttttc actaattgat tagtcatagc cagcgatata cgctatgcga aaatgcagat
    12241 ggcaatgaga tccactgctt tcatctccat taacatccca ttacgcttta ttaaggagca
    12301 ttagcatgtt ctcaccgcag tcacgcttgc gtcatgcagt tgcagatacg ttcgcgatgg
    12361 ttgtttactg ttctgtcgtg aacatgtgta ttgaagtttt cctctccgga atgagcttcg
    12421 aacagtcttt ttattccaga ttggtagcga ttccggtgaa catcttaatt gcatggccat
    12481 acggtatgta ccgcgatctg tttatgcgcg cggcacgcaa agttagcccg tcgggctgga
    12541 taaaaaatct ggctgatatc ctggcttatg tgacgttcca gtcaccggtg tatgtggcga
    12601 tcttgttagt ggtgggcgca gactggcatc agattatggc ggcggtcagt tcaaacatcg
    12661 ttgtttcgat gttgatgggg gcggtttatg gctacttcct cgattattgc cgccgactgt
    12721 ttaaagtcag ccgttaccag caggtaaaag cctgactctt cttttcgcga ctggcatcgc
    12781 cagtcgcgtc tttaactggc ttcgccaaat aaaccattca aataacgttc aagcgcaaca
    12841 cgcgaactga agccatgcgg gataccgtaa tgctcgtgtc gctcgcctgc taaatagagc
    12901 ggaaattgct ggtaatgatc gcaagtttta atatcggaag cgggttcagc cagtgttgaa
    12961 ctgcgttctt ttaatgttgg atgaattacc agagcggtac gtcccattcg cgcttcgcga
    13021 ttaacataga cataattttc cccacggcgg taaccatacg ctttctgggt taccacatcg
    13081 acagtaaaac cgactttttc aagtacgcgc gccacctcgt ctggtcgtaa atacatattt
    13141 gatcctcgtt attttcaacc gcgg
//
LOCUS       DAJVUN010000115        13098 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.115, whole genome shotgun sequence.
ACCESSION   DAJVUN010000115 DAJVUN010000000
VERSION     DAJVUN010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13098
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.115"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            7..1635
                     /locus_tag="OQQ76_002759"
     CDS             7..1635
                     /locus_tag="OQQ76_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001338794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin family protein"
                     /protein_id="HCS1969198.1"
                     /translation="MFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMS
                     GGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIA
                     TAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAED
                     LSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLIQETERRRRERNEVEQDVEV
                     AVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRI
                     LAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQS
                     QAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAE
                     KEAAEMQAAAIVELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPA
                     VIEKSVEPMKSIDGIKIIQVDGLNRGSAAGDANTGNVGGGNLAEQALSAALSYRTQAP
                     LIDSLLNEIGVSGGSLAALTSPLTSTTPVAENVE"
     gene            1874..1933
                     /locus_tag="OQQ76_002760"
     CDS             1874..1933
                     /locus_tag="OQQ76_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HCS1969199.1"
                     /translation="MMKLVIILIVLLLVSFAAY"
     gene            2250..2309
                     /gene="ibsE"
                     /locus_tag="OQQ76_002761"
     CDS             2250..2309
                     /gene="ibsE"
                     /locus_tag="OQQ76_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsE"
                     /protein_id="HCS1969200.1"
                     /translation="MMKFVIILVVLLLLSFPTY"
     gene            complement(2429..3862)
                     /gene="hldE"
                     /locus_tag="OQQ76_002762"
     CDS             complement(2429..3862)
                     /gene="hldE"
                     /locus_tag="OQQ76_002762"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HCS1969201.1"
                     /translation="MKVTLSEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN
                     TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP
                     TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASV
                     QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK
                     LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA
                     GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA
                     ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP
                     LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG
                     GEVLVLNFEDGCSTTNIIKKIQQDKKG"
     gene            complement(3910..6750)
                     /gene="glnE"
                     /locus_tag="OQQ76_002763"
     CDS             complement(3910..6750)
                     /gene="glnE"
                     /locus_tag="OQQ76_002763"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HCS1969202.1"
                     /translation="MKPLSSPLQQYWQTVVERLPEPLAEKSLSTQAKSVLTFSDFVQD
                     SVIAHPEWLTELESQSPQADEWQHYAAWLQEALSNVSDEAGLMRELRLFRRRIMVRIA
                     WAQTLALVTEESILQQLSHLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM
                     GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF
                     VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR
                     AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ
                     LIRGGREPSLQSRSLLPTLSVIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT
                     QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE
                     QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLM
                     PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA
                     SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ
                     LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNDREGRG
                     FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFN
                     TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ
                     LTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHRNRFDIKADEGGITDIE
                     FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL
                     ALQELPGHVSEDCFTAERDLVRASWQKWLVEE"
     gene            complement(6773..8074)
                     /gene="ygiF"
                     /locus_tag="OQQ76_002764"
     CDS             complement(6773..8074)
                     /gene="ygiF"
                     /locus_tag="OQQ76_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic triphosphatase"
                     /protein_id="HCS1969203.1"
                     /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP
                     DNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEV
                     WPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELE
                     LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK
                     ADVEQGLEAALELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHTLMLFGGIVPRKA
                     STHLRDLLTQCEATIASAVSAVTAVYSTKTAMAKLALTEWLVSKAWQPFLDAKAQSKM
                     SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQ
                     AWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR"
     gene            8316..8936
                     /locus_tag="OQQ76_002765"
                     /pseudo
     CDS             8316..8936
                     /locus_tag="OQQ76_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311965.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
     gene            9000..10238
                     /gene="cca"
                     /locus_tag="OQQ76_002766"
     CDS             9000..10238
                     /gene="cca"
                     /locus_tag="OQQ76_002766"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused tRNA nucleotidyltransferase/2',3'-cyclic
                     phosphodiesterase/2' nucleotidase/phosphatase Cca"
                     /protein_id="HCS1969204.1"
                     /translation="MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGR
                     DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD
                     NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLM
                     REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA
                     PARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA
                     GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQR
                     VEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREEL
                     TRRRIAAVASWKEQRCPKPD"
     gene            complement(10395..11216)
                     /gene="bacA"
                     /locus_tag="OQQ76_002767"
     CDS             complement(10395..11216)
                     /gene="bacA"
                     /locus_tag="OQQ76_002767"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HCS1969205.1"
                     /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT
                     AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA
                     VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI
                     GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF
                     LTTGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF"
     gene            complement(11307..11675)
                     /gene="folB"
                     /locus_tag="OQQ76_002768"
     CDS             complement(11307..11675)
                     /gene="folB"
                     /locus_tag="OQQ76_002768"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional dihydroneopterin
                     aldolase/7,8-dihydroneopterin epimerase"
                     /protein_id="HCS1969206.1"
                     /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS
                     DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV
                     ARAANVGVIIERGNNLKENN"
     gene            11780..12397
                     /gene="plsY"
                     /locus_tag="OQQ76_002769"
     CDS             11780..12397
                     /gene="plsY"
                     /locus_tag="OQQ76_002769"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HCS1969207.1"
                     /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT
                     NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF
                     KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP
                     QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE"
     gene            complement(12410..>13098)
                     /gene="ttdR"
                     /locus_tag="OQQ76_002770"
                     /gene_synonym="dan"
     CDS             complement(12410..>13098)
                     /gene="ttdR"
                     /locus_tag="OQQ76_002770"
                     /gene_synonym="dan"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TtdR"
                     /protein_id="HCS1969208.1"
                     /translation="LVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ
                     VHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQS
                     LQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIM
                     LRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
                     GKPDEGYQVM"
BASE COUNT         3160 a         3682 c         3282 g         2974 t
ORIGIN      
        1 tcctggatgt ttaccgcgat tattgccgta tgcattctgt ttattattgg aattattttc
       61 gccaggctct atcgtcgcgc ttcggcagag caagcttttg ttcgtactgg tttaggtggg
      121 caaaaagtgg tgatgagcgg tggcgcaatc gtgatgccga tctttcatga aataatcccc
      181 atcaatatga atactctgaa gctggaagtc agccgctcaa ccattgatag cctgattacg
      241 aaagatcgta tgcgtgtcga tgtagtagtc gctttctttg tacgggtaaa accgtctgta
      301 gaaggcatcg ccactgcggc gcagacgttg gggcaacgca cgctatcacc agaagactta
      361 cgtatgttgg ttgaagataa atttgtcgat gccctccgtg caacagctgc acaaatgacc
      421 atgcatgagt tacaggatac ccgcgagaac ttcgtgcagg gagtacaaaa tactgtcgca
      481 gaagacctgt cgaaaaacgg tcttgagctg gaaagcgttt cacttaccaa ctttaaccag
      541 acctcgaaag aacatttcaa tccgaacaat gcctttgacg ccgaaggttt aaccaaactg
      601 attcaggaga cggagcgccg tcgtcgcgaa cgtaacgaag ttgaacagga tgtagaagtt
      661 gcggtgcgtg agaaaaaccg tgatgcactt tcgcgcaagt tggagattga acaacaagaa
      721 gcgtttatga cgcttgagca ggagcagcag gttaaaaccc gtactgccga acagaatgca
      781 cgtattgcgg cttttgaagc tgaacgtcgt cgtgaagcag agcagacgcg aattctggct
      841 gaacgacaaa ttcaggaaac ggagatcgag cgcgagcagg ccgtccgctc aagaaaggtt
      901 gaggctgaac gtgaagttcg tattaaagag atcgaacagc agcaggtcac cgaaatcgcc
      961 aaccagacga aatcgatcgc tattgccgcc aaatcggaac aacagtccca ggcagaagcg
     1021 cgtgctaacc ttgcactcgc agaagcagta agtgcgcaac aaaacgtaga aaccactcgc
     1081 cagaccgcag aagccgatcg tgctaaacaa gttgccctaa tcgctgccgc gcaggatgca
     1141 gaaaccaaag cggttgaact gaccgtgcgg gcgaaagcag aaaaagaagc cgcagagatg
     1201 caggcggcgg ctatcgttga gttagccgaa gctacacgta aaaagggtct ggcggaagca
     1261 gaagcacaac gtgcgctgaa cgatgctatc aacgtacttt ctgatgaaca aaccagcctt
     1321 aaattcaaac tggccttgtt gcaggcgcta cctgcggtaa tagaaaaatc cgttgagccg
     1381 atgaaatcta ttgacggtat caagattatt caggtcgatg gtctgaatcg tggcagcgct
     1441 gcgggtgatg caaacacggg taatgtgggg ggcggaaacc tggcggaaca agcattatca
     1501 gccgctctct cttaccgcac acaggcaccg ctgattgact ccttgctcaa tgaaattggc
     1561 gtttcaggcg gctcactggc ggcattgact tcacccttaa cctcaacaac tcccgtcgcc
     1621 gaaaacgtag aataaatttt cagctatgaa cgtccctggc acaaaaagcc ggggattttt
     1681 tatatctgcg ttccgctaaa aactgcaaat gatcaggtcg ttgcaacgtt ttgcgtgacc
     1741 gctcggggaa ggcaaaactg cctctgggaa agcgttgcgc gaggtccggc gctcatcaac
     1801 aatcggggag tcagcaaagg gctgaaacgg gaaagcccct cccgaggaag gggccttaca
     1861 gaaggaaagg gttatgatga agctcgtcat catactgatt gtgttgttac tcgtaagttt
     1921 cgcagcttat taacagccaa tcagaggggg gagaaatcct ccctcaccct tgttccttta
     1981 ctttaggttg aaaaaaaatc agcgtcaaga aggtttcatt aacacatatc cctggcccaa
     2041 aaagccgggg attttttata tctgcgttcc gctaaaaggt gcaaatgctc aggacgttgc
     2101 agcgttttgc gtgaccgctc ggggaaggca aaactgcttc agggaaagcg ttgcgcgggg
     2161 tccggcgctc atcaacaatc ggggagtcag caaggggctg aaacgggaaa gcccctcccg
     2221 aggaaggggc cttatagaag gaaagggtta tgatgaaatt cgtcatcata ctggttgtgt
     2281 tgttactgtt aagtttcccg acttactaac aactgatcag aggggggata aatcctccct
     2341 tacccttgtt cctttacttt aggttgaaaa aacaacagcg tcaataggcc tgcctgctac
     2401 gaagcgagat ctgtgaaccg ctttccggtt agcctttttt atcctgttgg atcttcttga
     2461 tgatgttagt ggtcgagcaa ccgtcttcga agttgagcac cagcacttcg ccgccgttgg
     2521 cccagacttc tttactcccg gcgatctctt ctggtttata gtcgccgccc ttcaccagta
     2581 aatctggcag gatcccggcg atcaagcgct gcggcgtgtc ttcttcaaac gacaccaccc
     2641 agtcgaccgc ttccagtgcg cccagcacaa tcatacgctg ttcgagcggg ttaacggggc
     2701 gggaatcccc tttcagccgt ttggtggagg catcgctgtt cacagcgaca atcagacggt
     2761 cacccagttt gcgagcattt gccagatagg agacgtgccc ggcgtgcagg atgtcaaaga
     2821 caccgttggt cattaccacc ttttcgccgc gtttacgcgc tgccgctacg gccagcttca
     2881 gttcctcttc ggtcatcacg ccaaagccgg tatctgcgcg cccacgcact gcattttcca
     2941 gctcgatcgg cgaaaccgtg gaggttccca gtttgccgac caccacgcca gccgccgcat
     3001 tggcaaagaa gcaggcttct tccagcgaat tacccgctgc cagcgttgcc gccaggacgc
     3061 caatcaccgt gtcgcccgca ccggtaacgt catacacttc ctgcgcctgg gttggcatat
     3121 gcagcggcgc tttacccggt tgcagcagcg acataccctg ttcggaacgg gtcactaaca
     3181 gagccgagag ttcgtaatcg gcaatcagtt tcatgccgcg ctcaacaatc tcttcttcgg
     3241 tcttacattt accgacaaca gcttcaaatt ccgagagatt cggcgttaac agcgtagcgc
     3301 cgcggtagcg ctcaaaatcg gtaccttttg gatcaatcag caccggaacg cccgctttac
     3361 gcgccagttg gatcatctgc tgtacgcttg ccagcgcacc tttggcgtag tcagaaagca
     3421 ccagcgcgcc aatcgaactc agcgcctgat taatccgctc gtgcagcggc tgcggatcaa
     3481 cgccttcgaa accttcttcg aaatccagac ggatcagctg ttggttgcgg gaaagtaccc
     3541 gtaatttggt gatggtcgga tgcgtcggta cagaaacgaa gtcgcatttg acgttgacgt
     3601 cggccagaga tttactcagc gcgcgcgctg catcgtcaat gcccgtcaac ccgaccaggc
     3661 gtgcattagc accgagagaa gcgatattca tcgccacgtt agccgcgccg cccggacgtt
     3721 cttcgatggt attcacttta accacgggca ccggcgcttc cggcgagata cggctggtgg
     3781 gaccgtacca gtaacgatcc agcattacat caccaaccac catcactcct gcacgttcaa
     3841 actctgacag cgttactttc attcctgtct cctgagagat tcaaaatttg cgcgcgataa
     3901 taccatactt cattcttcca ccagccactt ctgccagctt gcccgcacca gatcacgctc
     3961 tgcggtgaag caatcctccg acacatggcc cggcaattcc tgtaatgcca gatgatgaag
     4021 ttcatcgcgc agcgtcgtgt aagcacgggt cagcgccatc gcttcctgct cttccataat
     4081 gtcgttttgc gccagcagct ccagaatacg cacgttgtct gaccagcgcg ttaacttcgg
     4141 tttttcatga gcgtagcgca acaccagata ttgggtaata aattcgatat cggtaattcc
     4201 gccttcatcg gctttgatat caaagcgatt acgatgttta ttgccgagat gagcgcgcat
     4261 tttctcgcgc atttcccgca cttccgtttg cagagtttta ccttcacgcg gcagcgtcat
     4321 aatctcgcga cgcactgcgt caaagtgcgc ggtgagctgc ggatcgccgt acactacacg
     4381 cgcacgcacc agcgcctgat gctcccacgt ccaggcctcg tttttctgat aatcagcaaa
     4441 tgcttctgcg gatgtcacca gcattcccgc cgccccggac ggacgcagtc gtgcatccac
     4501 ttcatacaaa atgccggaag aggttcgcgt attgaacaga tgcataatgc gttgcgccag
     4561 acgcagataa aactgtcgcc cgtcgatttc ccgctcgccg tcagtcatcg catccattgg
     4621 gcaatcatgg aggaagatca ggtcaagatc ggaactgtag cctaactccc agccgcccag
     4681 cttgccgtag ccgaccaccg caaaaccacg gccttcgcga tcgttgaggt gatttggctt
     4741 accgtagcgg gccaccattt gaacccacgc ctgctgaacg acggcatcta tcatagcctc
     4801 tgccagccag gttaagtgat cgctcacttt catcaccggt agcgtaccag cgatatccgc
     4861 tgcggcgatg cgtaacagct gcgcctgttt gaactgacgc agcgcctcaa gctgttgctc
     4921 ttcgtcatct tccggcacgc gcagcaaata ctggcgcaac tcatcgcggt aggcatcggt
     4981 cgccgtcggc tggtaaagag tgtttggatc gagcaattca tccagcaata atggataacg
     5041 cgccagctgg ctggcaatca tcggcgatgc ggcacacaga gaaatcaaat gtttaagcgc
     5101 cgcagggaat tcactgagca attctaaata ggtggtgcgg gtaacaatcc ccaccagcaa
     5161 ggcggtaatg cgcgacagcg taacggcagc gtcttcacgc gcacagacat cacttagcag
     5221 atgtggcatc agatggtcga gcacctgacg tcctcgcggc ccgatagtac gcttatccag
     5281 ctctttgcgg aaatcagcaa tcagcgttag gacctgtttg cgatcatcct cgctaagatg
     5341 cgctagcact ggcgtagtgt catcttcctg caacgcatcc tgccacagct cacgccactg
     5401 ttccgacagc gactcttcct gagtttcact ttcgtcgtcg ccaatcaatt cattaaacac
     5461 ccggcgcaca ttggtcatat gtgcggtcag cgccccggtc agttgcggcc agtcagcaaa
     5521 gtccatcgcc cacgccagcc gcgcacggtt aagctcatca gaaggaagcg tttgggtttg
     5581 ttcgtcgtta atgctttgca gcaggttttc cagacgccgc aggaacagat atgccactcg
     5641 caattgttca gcatcgtttt cagaaagcag atgcagcgcg gcaatgacgc tgagcgttgg
     5701 cagtaaagag cgcgactgca gcgacggttc gcgcccaccg cgaatgagct ggaacacctg
     5761 aacgataaat tcaatttcgc gaatgccgcc tgcgccgagt ttgatattgt cggtcaaacc
     5821 acgtcgacgc acttcacggg caatcatccc tttcatgttg cgcagcgact gaatcacgct
     5881 gaaatcgatg taacgacgga aaacaaacgg gcgcagcatc gcacgcaact cgttagcata
     5941 gacgccttcg ctatcgccca taatccgcgc cttgaccatc gcgtaacgct cccagtcgcg
     6001 cccctgctcc tggtaataat cctccaacgc ggcaaagctc agcaccagcg ggccactttc
     6061 gccaaacgga cgcagccgca tatccacgcg atagacgaag ccatcctgcg ttggttgatc
     6121 caacacttta atcagccgct gccccatgcg ggtaaaaaac tgcgcgttat ccagttcccg
     6181 gcgtccgccc tgcgtacaac catgttccgg ccaggcaaaa atcagatcga tatctgagga
     6241 gaaattcagt tccccaccgc ccagcttacc catgcctaaa atcagcagcg gttgcgcttc
     6301 gccctgcgca ttgcacggcg ttccccactc gcggcagcaa gcgtcataca gccagtcacg
     6361 cgcggcgaca atcagcgtct ccgccagatg gctgagctgc tgcaatatgc tctcttcagt
     6421 aaccaaagcc agcgtttgcg cccaggcgat gcgcaccata atgcgccgcc ggaatagccg
     6481 cagctcgcgc attaacccgg cttcgtcact cacattgctg agcgcctcct gcaaccatgc
     6541 cgcgtaatgc tgccattcat cagcctgcgg cgattggctt tccagttccg tcagccactc
     6601 tggatgcgca atcacgctgt cctgcacaaa atcactgaaa gtaagtactg acttcgcctg
     6661 tgtgctaagt gatttctcgg ctaaaggctc tggcagccgc tcaacaaccg tctgccagta
     6721 ctgctgtaac ggtgaagaga gcggcttcat aagcgatttt atccttgcct gattaacgtt
     6781 ttccgctgtg caaccagaac ggttcctgat tgtttgcctc attacggaaa tgttcaattt
     6841 caatgcgttg cccggtcgca atagcgtgac gcagcccctg ccagttctcc agccaggctt
     6901 gcgcgacgac aggatcatag taacccgcca gcaacagtat tgagtcaata tcacgcgtca
     6961 gacgtggcaa ctggtcacgg tagcgatcgc ccaacggctg gcagaaaacg cttttcagtt
     7021 cagcggcatg gcgggaaaga tggatatcgg caaagcgttt gaaggaatcg ctcattttac
     7081 tctgcgcttt ggcatctaaa aacggctgcc aggctttgct taccagccat tcggtcaacg
     7141 ccagcttcgc cattgccgtt ttggtagagt agaccgccgt cacggcagaa accgcagaag
     7201 cgatggtcgc ttcgcattga gtcagcaaat cacgtaagtg agtgctcgct ttgcgcggca
     7261 caataccacc gaacagcatc agtgtatgac ggaccagacc aatggctgcc agcacctgtt
     7321 ctttcgccgc atcgttgccg cgtacccaca gttcttcatg atactgccat tgcgctaacg
     7381 ccagctcgag cgccgcttcc agcccctgtt ccacatcggc ttttgccgca acatgcaaaa
     7441 tggtggtcgg tttgatttca cgcgccggat tgccctgcgc cagatgatag ccacgcgccg
     7501 ctttgctcag gctgccctgg cgtaatccgg tttgcgatac cagttggttc gccagtttca
     7561 gcaccgcgcg cgtgtcgccg ctaagcagtt ccagttccag ctcacagata ggttcagcaa
     7621 attcccccgc tttcacctcc ccctgatcga gagcgatttc aattcggctg tcatcgaccg
     7681 ccaccagcca tttttcgcga taaaaatcgg tgctgaacag cggttgtacg cgggaagcga
     7741 gatcggcggg caattcgccg ttcggccaga cttccgtcgg taactgcgcc aggtcgagcg
     7801 tcggttcgct caacgccacg ttatattccg ggcgctggtg taagccgcct gtcactcttc
     7861 ctgcaacttt catggtcatc tcatagcgac cgttttcgcc acgaatacgt aagcccatat
     7921 cgtgcccacg cagccagtta tccggcgttt cgtagtaaat attcagcaac tgcacggggt
     7981 catggtgctc gccgcccagc gtattgagat ggtcacgcaa cgcctcaacg gcactgtgat
     8041 taacaataaa ctttaattcg atttcctgag ccatggcctt tacttatcgg ttatgtcaca
     8101 taagtgacga tgaacggcga acttaatgcg atcttttttg tcagtagata gtattttgcg
     8161 tcaaattgcc atgcaacggg caatttgacg ggcgtaaaag tttgaagcag tggcaagacc
     8221 tgacacagag gattccgatt gatgtcgaat gctttgcgta gcgacactga tgccactact
     8281 atcgttccac tttccatgac aataacgaca gcctgatgcc aaaattacgc ctgatcggat
     8341 taactttact cgcacttagc gccactgccg tctcacacgc tgaagaaacg cgctatgttt
     8401 ctgatgaact gaatacctgg gtccgtagcg gtccgggaga tcattatcgc ctcgtgggca
     8461 cggttaacgc cggcgaggaa gtgaccttat tacaaactga cgccaacacc aattatgccc
     8521 aggtgaaaga cagctctggc cgtaccgcct ggatcccgtt gaaacaactt agcactgagc
     8581 caagcctgcg ctcccgtgtg ccagatctgg aaaatcaggt caaaaccctg accgataaac
     8641 tcaccaatat cgataacacc tggaatcagc gcaccgcaga aatgcagtaa aaagtggcgc
     8701 agagcgacag cgtgatcaac ggattaaaag aagaaaatca gaaattgaaa aacgagctga
     8761 ttgtcgcgca gaaaaaggtc gatgccgcca gcgtacagct ggatgacaaa cagcgcacca
     8821 tcatcatgca atggtttatg tatggcggtg gcgtgctggg gcttggcttg ctgctcggtc
     8881 tggtactgcc acacctgatc ccaacgcgca aacgcaaaga tcgctggatg aactaaatcg
     8941 ccttcttcgt tgcactgtct tattattagg aattgtgtat ttgacgaagg gatgatggcg
     9001 tgaagattta tctggtcggt ggtgctgttc gggatgcatt gttagggcta ccggtcaaag
     9061 acagagattg ggtggtggtc ggcagtacgc cacaggagat gctcgacgcg ggctaccagc
     9121 aggtaggccg cgattttcct gtgtttctgc atccgcaaac gcatgaagag tatgcgctgg
     9181 cacgtaccga acggaaatcc ggttccggtt acaccggttt tacttgctat gccgcaccgg
     9241 atgtcacgct ggaagatgat cttaagcgtc gcgatctgac cattaatgcg ctggcccagg
     9301 acgataacgg cgagattatc gacccgtaca acggtctggg cgatctgcaa aatcgtctgt
     9361 tgcgccatgt ttcccccgct tttggcgaag atccgttacg cgttctgcgc gtggcgcgtt
     9421 ttgctgcgcg ttatgcccac ctcggttttc gtattgccga tgaaactctg acgctgatgc
     9481 gcgagatgac ccatgcgggt gaactggaac acctgacgcc tgaacgggta tggaaagaga
     9541 cggaaagcgc cctcaccacc cgcaatcccc aagtgttctt ccaggtactg cgcgattgcg
     9601 gtgcacttcg cgttttattc ccggaaattg acgccctgtt tggcgttccg gcccctgcca
     9661 ggtggcatcc ggaaatcgac accggtattc ataccttaat gacgctctca atggcggcga
     9721 tgctgagtcc gcaggttgat gtccgtttcg caactttatg ccacgatctc ggtaaaggac
     9781 tgacgccgcc agaactttgg ccgcgtcatc atgggcatgg cccggcgggt gttaagttag
     9841 tggaacaact atgccagcgt ctgcgcgtgc caaatgaaat tcgcgattta gccagactgg
     9901 tggctgagtt tcacgatctc atccacacct tcccaatgct gaacccaaaa accatcgtca
     9961 aattatttga ttccatcgat gcctggcgta aaccgcagcg tgtcgagcaa ctggcgctga
    10021 ccagcgaggc tgacgtacgc ggcagaaccg gttttgaatc agcggactac ccgcaaggcc
    10081 gttggttgcg cgaagcctgg gaagtggcgc agtcagtgcc gacaaaagcg gtcgttgaag
    10141 cgggatttaa aggtgtggag attcgcgagg agctgacccg acggcggatt gcggcggtag
    10201 ccagttggaa ggaacaacgt tgcccaaagc ctgactgagt ataaaactaa acgttaacac
    10261 gaaccatccc ctcgcccctt cggggagagg gtgaggggaa cagaccagca ccggtgcgaa
    10321 caatcacccc caccccggcc ctctccctac agagcgaggg agaaaaccag gcctgctccc
    10381 gaaccttttc tcaatcaaaa gaacacgacg tacaccgcag ccgccacaat aaagcgataa
    10441 atggcgaacg ggataaacga aatgcgctta atcaattgca ggaaggtttt aatcgctatc
    10501 agtgccacca caaaagcggt gataaaccca acggcaaaca tcgggatatc gccggttgtc
    10561 aggaagcccc agcttttgta gagatcgagc gccgttgcgc ccatcatcat cggtaccgcc
    10621 agcaggaacg agaactcgga agcagcgtaa cggctcacgc ccatcagcat cccacctgaa
    10681 atggtggccc cggaacggga gaaacccggc cacagcgcca gacactggaa acagccaatc
    10741 ataaacgcct gacgataggt catatcatca agacccggcg cacgcggctc tttcggcttc
    10801 aggcattcgg cggcaatcag caacaaaccg ccaacgacca gtgcatacat cacatttatc
    10861 gggttaaaca atgacttaat cgtgtcgtgg aacaacagcc ccagtaccac cgccggaatc
    10921 atccccagca aaatgtggat cagcgttaaa cgacctttgc tttctccttc gtgctgcaac
    10981 gggcggccaa agtggatgcc aatcaggcca aacagacgcc gccagaacat cactactacc
    11041 gccagaattg atcctaactg gatcacaact tcaaaggttt tcgccgtgtc gccctcgaac
    11101 cccaacaagt gaccgacaat aatcatatgg cccgtgctgg ataccggcag aaattctgtc
    11161 aatccttcga ccacacccaa tattgccgct atcagcagcg agtgcatatc gctcatcaat
    11221 aaacccctaa attattaaaa tgtaccgctt gtccggacta ctgcagtaag accaggttat
    11281 aaccgtttgg tttaacagct gtaaaattaa ttattttctt tcagattatt gccacgctca
    11341 atgattacac caacattcgc cgcccgcgcc actgcgcctg gcttgctgag tttgatgcgc
    11401 acccacggcg agttgaagcg tgctaacagc agctccgcca cctcttcagc cacgcgttcc
    11461 accagcgcaa aacgcgcccc ctcgacgtgg ctgaccaccg tttctgcaat gtcagcgtaa
    11521 ctgaggcaat ccgccacatc atcacttttc gccgctttac ggttatccca tgccatttcg
    11581 atatcgaaca ctaacttctg ttcgatggtc tgttcccagt cgtaaacacc aatagtggtg
    11641 attaccgaaa gttgctctat aaatacaata tccatcacgt cctgcctgct ttttggctaa
    11701 ccggatacca cttccggcga aatgtgcgta ttatccacag attcatcgtt gaacacgaat
    11761 tttcaaaacg gaacagctta tgagtgcaat cgcgcctgga atgatcctca tcgcgtacct
    11821 ctgcggctcc atttccagtg ccattctggt ttgccgcttg tgtgggctgc ccgatccgcg
    11881 aaccagcggc tccggcaatc caggcgcaac caatgtgtta cgtatcggtg gcaagggagc
    11941 agccgtagca gtactgattt tcgacgttct gaaaggaatg ttgcccgtct ggggcgcgta
    12001 tgaattaggt gtcagcccct tctggctagg cttaattgcc atcgccgcct gtcttggaca
    12061 catctggccc gttttcttcg gatttaaagg aggaaaaggc gttgctaccg cttttggtgc
    12121 catcgcaccc attggctggg atctcaccgg agtaatggcg ggaacctggt tactgaccgt
    12181 gctattgagc ggatactcgt cgctgggagc gattgtcagt gcactgattg ctccgtttta
    12241 tgtctggtgg tttaagccac aattcacctt cccggtttcg atgctctctt gcctgatcct
    12301 gctgcgtcat catgacaaca tccagcgtct gtggcgtcgt caggagacaa aaatctggac
    12361 gaaattcaaa agaaagcgcg aaaaggatcc cgagtgattt ctggtggatc tacatgacct
    12421 gatagccttc atcgggcttg cccagccgtt gctggcacca tgccgccaga aattccacgc
    12481 agacacgtaa tttcatgctg cgatagagcg gctcccggta aacagcccag atattggcgc
    12541 tttgtgcata ctccggcaat acttgcacca gtttgccact ctccagaaac ggcaacacat
    12601 cccactcgga acgcagcata atccctttgc cctccagcgc ccattgcaac actatctcgc
    12661 cgctattgga ggaaagatgc ccgctaacct tcaccgattt tttctcctga ccgttcccca
    12721 actcccatat tccgtgggtc atatcgcgct ctttggtcac cagacagtca tgacgactta
    12781 attcctgtaa tgattgtggc tgcggatatt tttgcagata ctcaggtgct gcgcataata
    12841 ttcttttatt tttcgttaac agatgcgcaa tataataatc aggaatttcg tcattaatac
    12901 gaatatccag atcaatatta tcctgcacta aatcaatttg ccgatcgaac aattcaaaat
    12961 gcacctgtaa ctcaggataa ttgcgcataa gttcggtaat ggctggcgca atatggctgc
    13021 gcccaaaacc aaaactgcaa ccaatacgaa tcatcccctc cgggcgcgtt ttgatttgcg
    13081 tgacgtcatc gaccagtc
//
LOCUS       DAJVUN010000116        12986 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.116, whole genome shotgun sequence.
ACCESSION   DAJVUN010000116 DAJVUN010000000
VERSION     DAJVUN010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12986
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.116"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..910)
                     /locus_tag="OQQ76_002771"
     CDS             complement(<1..910)
                     /locus_tag="OQQ76_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HCS1969209.1"
                     /translation="MTNFTTSTPHDALFKSFLTHPDTARDFMEIHIPKDLRELCDLDS
                     LKLESASFVDEKLRVLHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAV
                     MQRHIEHDKRRPLPLVIPMLFYHGSRSPYPWSLCWLDEFAAPTTARKLYSAAFPLVDV
                     TVVPDDEIVQHRRVALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYIL
                     LTGDEARFKAFISELTRRMPHHRERIMTIAERIHNDGWLLGRERGRKEGKVEGERSLL
                     RLLLQNGADPEWIQRYTGLSAEQMQAL"
     gene            1377..2609
                     /gene="mdtM"
                     /locus_tag="OQQ76_002772"
     CDS             1377..2609
                     /gene="mdtM"
                     /locus_tag="OQQ76_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtM"
                     /protein_id="HCS1969210.1"
                     /translation="MPRFFARHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFN
                     ADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMT
                     QFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAAL
                     MHFVHWKVLFAIIAVMGFISFVGLLLAMPETVKRGAVPFSAKSVFRDFRNVFCNRLFL
                     FGAATISLSYIPMMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANAIVARFVK
                     DPTEPRFIWRAVPIQLVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFT
                     LFSNNLPKGTVSASLNMVILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLA
                     GLLNRVRQHQAAELAEER"
     gene            2650..3930
                     /locus_tag="OQQ76_002773"
     CDS             2650..3930
                     /locus_tag="OQQ76_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HCS1969211.1"
                     /translation="MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIA
                     EAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL
                     VALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAI
                     DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEH
                     PLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDP
                     EMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSEDSRVKERIARAGQWFGE
                     TLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKD
                     LQFIRVNGTLVGGCIGLILYLLSQLPALFPLSNF"
     gene            4046..5198
                     /locus_tag="OQQ76_002774"
                     /pseudo
     CDS             4046..5198
                     /locus_tag="OQQ76_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418755.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase subunit D"
     gene            5208..5988
                     /locus_tag="OQQ76_002775"
                     /pseudo
     CDS             5208..5988
                     /locus_tag="OQQ76_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313324.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5985..6242
                     /locus_tag="OQQ76_002776"
     CDS             5985..6242
                     /locus_tag="OQQ76_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3343 domain-containing protein"
                     /protein_id="HCS1969212.1"
                     /translation="MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLC
                     IWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYRVSPR"
     gene            6196..7167
                     /locus_tag="OQQ76_002777"
     CDS             6196..7167
                     /locus_tag="OQQ76_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HCS1969213.1"
                     /translation="MVSGAALHITGFLRVKDSLRSLRILLDILLICLKGITVTKSISL
                     SKRISVIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTW
                     SAQSNTLFSTINKPAAIVEMTTNGDFIRTIPLDFVKDLETIEYIGDNQFVISDERDYA
                     IYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN
                     GLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG
                     EISLTKGSRGLSHNIKQAEGIAMDASGNIYIVSEPNRFYRFTPKSSH"
     gene            7235..8413
                     /locus_tag="OQQ76_002778"
     CDS             7235..8413
                     /locus_tag="OQQ76_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969214.1"
                     /translation="MPSSSHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVIMAE
                     GAFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLVSALASGLLILAMAWL
                     PPFILVLLIRFLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIGIALGNEYVLA
                     GLHFAFSSQTLWQGAGALSGMMLIALTLLMPSKKHAIAPMPLAKTEQQIMSWWLLAIL
                     YGLAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPC
                     LTANLLVQAISVLLTLASDSPLLLIISSIGFGGTFMGTTSLVMTIARQLSVPGNLNLL
                     GFVTLIYGIGQILGPALTSMLGNGTSALAGATLCGAAALFIAALISTVQLFKLQVVTS
                     "
     gene            complement(8426..8980)
                     /gene="kptA"
                     /locus_tag="OQQ76_002779"
     CDS             complement(8426..8980)
                     /gene="kptA"
                     /locus_tag="OQQ76_002779"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2'-phosphotransferase"
                     /protein_id="HCS1969215.1"
                     /translation="MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLIL
                     CAQKAGKRLTRALLDTVVATSDKKRFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQF
                     LYHGTASRFLDEIKKQGLIAGDRHYVHLSADEATARKVGARHGSPVVLTVKPQEMAKR
                     GIPFWQAENGVWLTSTVAVEFLEW"
     gene            9230..9913
                     /locus_tag="OQQ76_002780"
     CDS             9230..9913
                     /locus_tag="OQQ76_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418750.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969216.1"
                     /translation="MTQQGDAVAGELATEKVGIKGYLAFFLTIIFFSGVFSGTDSWWR
                     VFDFSVLNGSFGQLPGANGATTSFRGAGGAGAKDGFLFALELAPSVILSLGIISITDG
                     LGGLRAAQQLMTPVLKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKV
                     IFAAYQTSGSAIITNYFSSGVAVFAFLGTSVIVPLAVILVFKFVGANILRVWLNFEER
                     RNPTQGAQA"
     gene            9910..10371
                     /locus_tag="OQQ76_002781"
     CDS             9910..10371
                     /locus_tag="OQQ76_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiG family protein"
                     /protein_id="HCS1969217.1"
                     /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI
                     TGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATAGALTGHDVTV
                     LLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV"
     gene            10384..11556
                     /gene="iadA"
                     /locus_tag="OQQ76_002782"
     CDS             10384..11556
                     /gene="iadA"
                     /locus_tag="OQQ76_002782"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HCS1969218.1"
                     /translation="MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPS
                     DIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG
                     LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
                     VKCAISDHRSAAPDVYHLANMAAESRVGGLLGSKPGVTVFHMGDSKKALQPIYDLLEN
                     CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIP
                     LARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTS
                     SVAGFLNLSGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA"
     gene            11621..12532
                     /gene="hypT"
                     /locus_tag="OQQ76_002783"
                     /gene_synonym="qseD"
     CDS             11621..12532
                     /gene="hypT"
                     /locus_tag="OQQ76_002783"
                     /gene_synonym="qseD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypochlorite stress DNA-binding transcriptional
                     regulator HypT"
                     /protein_id="HCS1969219.1"
                     /translation="MDDCGAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSR
                     RIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRK
                     IKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLL
                     EAPFDHIRLFESQLFPVCASDEYGEAIFNLAQPHFPLLNYSRNSYMGRLINRTLTRHS
                     ELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAY
                     AYRMNTRMNPVAERFWRELRELEIVLS"
     gene            complement(12525..12917)
                     /gene="iraD"
                     /locus_tag="OQQ76_002784"
     CDS             complement(12525..12917)
                     /gene="iraD"
                     /locus_tag="OQQ76_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313312.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraD"
                     /protein_id="HCS1969220.1"
                     /translation="MMRQSLQAVLPEISGNKTSLLRKSVCSALLTLFNSPHSALPSLL
                     VSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIM
                     LYHDDEPLTFDLVWDNGGWRSATLENVS"
     gene            complement(12914..>12986)
                     /gene="idlP"
                     /locus_tag="OQQ76_002785"
     CDS             complement(12914..>12986)
                     /gene="idlP"
                     /locus_tag="OQQ76_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iraD leader peptide IdlP"
                     /protein_id="HCS1969221.1"
                     /translation="HQYSGARCSGQAAYVAKRQECAK"
BASE COUNT         2894 a         3314 c         3363 g         3415 t
ORIGIN      
        1 ctaatgcctg catttgctct gccgaaagtc cggtatatcg ttgtatccat tcaggatcgg
       61 ccccattctg caacaacaat cggaggaggc tccgttcccc ttctactttc ccttctttcc
      121 tccccctctc ccttcccaac agccatccat cattatgaat tcgctctgca attgtcatta
      181 ttcgctccct gtggtgtggc attcgcctgg taagttcgct gataaacgcc ttaaaacgcg
      241 cttcatcgcc agtcagtaaa atgtaattta acagcgcagt tatctggctg tcattagcac
      301 actctgtaac cagtaatact accagttggt caataagccc catcaaatcg cgctggcgaa
      361 tatgcttttg gatcaactcc aacagggcga ctctgcgatg ctgcacaatc tcgtcgtctg
      421 gcacgacagt gacatccacc agcgggaacg ctgcgctata aagtttccgt gcggtagtcg
      481 gggcggcaaa ttcgtccagc cagcacaggg accaggggta aggactacgg ctaccgtgat
      541 aaaacagcat cgggataacc agcggtagcg gccggcgttt atcatgctcg atatggcgct
      601 gcatcaccgc catggaatat cgcatcaggc gaaatgccat atgaatatcc tcgcggctct
      661 gatgttcaat cactacgtaa atataaccat caccttcacg ggtctttacc gaccacagaa
      721 tatcggagtg tagcacccgc aatttttcat cgacaaagct ggcggattcc agttttaagc
      781 tgtcgagatc gcacagttca cgtaaatctt tgggtatgtg gatctccata aaatcccgcg
      841 cggtgtcagg gtgagtgaga aaggatttaa ataatgcgtc atgtggcgtg ctggtcgtga
      901 agtttgtcat ggcgatccgt cacctgtaga taagatggcc cgactttagc gactaacaaa
      961 accattctca cccggcaatt tctcgttccc cgaggtgctt tccaggcgtc tgcaaacgat
     1021 acatttttcc ggaaacaggc tcgcgtttta catttcctgt acccggcaga tattcccctt
     1081 tccaccgcgc tcttttgatt aaccgcaaat tttaattaca cttaaggtgt atattttcta
     1141 tgcaacccat caattaaaga ggtgtaatgt gctgatgact atttgtaatc gttatacatt
     1201 ctgacctgga gtcagaaggt atttctctgt ctgtgtgttc acaggcagtg tggttgatta
     1261 catgaaattc agtacatttg cagtctcgtt gcccttctcg cctgcctttc gtcattaccg
     1321 acggtattga atttcgtttt ccccgttggg gttctccgaa caaggagttg tttgttatgc
     1381 cacgtttttt tgcccgccat gccgccacgc tgtttttccc gatggcgttg attttgtatg
     1441 actttgccgc gtacctgtcg acggatctga tccagccggg gatcattaat gtggtccgtg
     1501 attttaatgc cgatgtcagt ctggccccgg cagccgtcag tctctatctc gcgggcggta
     1561 tggcgttaca gtggctgctg gggccgcttt ccgacaggat tggccgcagg ccggtgctga
     1621 ttaccggggc gctaatattt acccttgcct gcgctgcgac aatgttcaca acgtctatga
     1681 cacagtttct tatcgcgcgt gcaattcagg gcaccagtat ctgttttatt gccaccgttg
     1741 gttatgtcac ggtgcaggag gcgttcggcc agacaaaagg gatcaagttg atggcgatta
     1801 tcacctccat cgtactgatt gcgccgatta ttggcccgct ttccggcgca gctctgatgc
     1861 actttgtgca ctggaaagtc ctttttgcca tcattgcagt tatgggtttt atctcatttg
     1921 ttggcttact gctggcgatg ccagagacgg tgaagcgcgg cgcggttcca tttagcgcca
     1981 aaagcgtctt tcgcgatttt cgtaatgtct tttgcaatcg gctgttcctc tttggcgcag
     2041 caaccatctc tttaagctat atcccaatga tgagttgggt ggctgtctcg ccggtgatcc
     2101 tgatcgacgc gggcagctta acaacttcgc agttcgcctg gacacaggtt ccggtgttcg
     2161 gcgcggtgat tgtcgcgaat gccatcgtgg cgcgtttcgt taaagatccg accgaaccgc
     2221 gctttatctg gcgtgctgta cccattcaac tggtcggcct cgcgctgttg attatcggca
     2281 atctgctgtc accgcacgtc tggctgtggt cggtgctggg caccagtttg tatgctttcg
     2341 ggattggttt gatcttcccg accttattcc gctttacgct tttttccaat aacttaccga
     2401 aagggaccgt ctccgcatcg ctgaatatgg tgatcctgat ggtgatgtct gtctcggtcg
     2461 aaatcggccg ctggctgtgg tttaacggcg gtcgcttgcc gtttcatctg ttagccgtcg
     2521 tggcgggcgt tatcgtcgtt ttcaccctgg caggattgct taatcgcgtg cgccaacatc
     2581 aggctgccga gctggcggag gagcggtgat ttttgcgcga tcctgccgtc aggctctatt
     2641 cttaacgtta tgaataaact cattgaactc agacgcgcca aaatgttggc gctctcttta
     2701 ctgcttatcg ccgctgctac ctttgtcgtt acgctgtttt tgccgcccaa tttttgggtg
     2761 agcggcgtga aggcgattgc tgaagcggcg atggtcggcg cgctggcgga ctggtttgcg
     2821 gtggtggcgc tgtttcgccg cgtgccgatt ccgatcattt ctcgtcatac ggcgattatc
     2881 ccgcgtaata aagaccggat tggcgaaaat ctcggtcagt tcgtgcagga aaaatttctc
     2941 gatacccagt cgctggtggc attgattcga cgtcacgaac cggcgttgtt gattggcaac
     3001 tggtttagtc agccggagaa cgcccgccgc gttggtcagc atctgttgca gatcatgagc
     3061 ggttttcttg aactgaccga tgatgcgcgt attcagcgcc tgcttaagcg cgcggtccat
     3121 cgggcgattg ataaggtcga tctttccgga accagtgcgt tgatgctgga gagtatgacc
     3181 aaaaacgatc gtcatcaggt gctgctcgat acgctgatcg cacagttgat cgcccttctc
     3241 cagcgcgata aatcgcgcaa gtttattgcc cagcaaattg ttcgctggct ggagagcgag
     3301 catccgctga aagccaaaat tttgcctact gaatggctgg gcgaacatag cgcggagttg
     3361 gtttctgacg cggtgaattc tttgcttgat gatatcagcc gcgatcgtgc gcatcagatc
     3421 cgtcatgcgt ttgatcgcgc cacttttgcc ctgatcgaca agctgaaaaa cgatccggaa
     3481 atggcagcgc gagccgatgc cgtaaaaagt tatctgaaag aagatgaagc ttttaaccgc
     3541 tatctcagtg aattgtgggg ggatttacgg gaatggctga aagcggatat caacagtgaa
     3601 gattctcgtg tgaaagaacg tatcgcgcgg gcgggtcaat ggtttggcga aacgttaatt
     3661 gccgatgatg ccttgcgggc atcgttaaat ggtcacctgg aacaagccgc gcaccgcgtc
     3721 gcgcctgagt tttccgcatt cctgacgcgc cacatcagcg atacagtaaa aagctgggat
     3781 gctcgggata tgtcgcggca aatcgagtta aatatcggca aagatctgca gtttatccgt
     3841 gtcaacggta cgctggttgg cggttgtatt gggctaattt tatatttgtt gtcgcagctc
     3901 ccggccttgt tccccctcag caatttttag aaatccatga aaaactaagt ggctaaccgc
     3961 gagagagatc aaataaacca cactaaaaga atggtaataa tgtggcctct tttcattatc
     4021 tcccgtggta cggggaagga aaatcatgtc acttatcacc gatctacccg ccattttcga
     4081 tcagttctct gaagctcgcc agaaaggctt tctcaccgtc atggatctca aggagcgcgg
     4141 cattccgctg gttggcactt actgcacctt tatgccgcaa gagatcccga tggcagccgg
     4201 tgcggttgtg gtttcgctct gttctacctc tgatgaaacc attgaagaag cggagaaaga
     4261 tctgccgcgc aacctctgcc cgctgattaa aagcagctac ggcttcggca aaaccgataa
     4321 atgcccctac ttctactttt cggatctggt ggtcggtgaa accacctgcg acggcaaaaa
     4381 gaaaatgtat gaatacatgg cggagtttaa gcccgttcat gtgatgcagt tgccgaacag
     4441 cgttaaggac gatacctcgc gtgcgttatg gaaagccgag atgctgcgct tgcaaaaaac
     4501 ggtagaagaa cgttttgggc acgagattag cgaagatgct ctgcgcgatg ccattgcgct
     4561 gaaaaaccgc gaacgtcgcg cactggccaa tttttatcat cttgggcagt taaatcctcc
     4621 ggcgcttagc ggcagcgaca ttctgaaagt ggtctacggc gcaaccttcc ggttcgataa
     4681 agaggcgttg atcaatgaac tggatgcaat gaccgcccgc gttcgtcagc agtgggaaga
     4741 aggccagcga ctggacccgc gtccacgcat tttaatcacc ggctgcccga ttggcggcgc
     4801 agcaaaaaaa gtggtgcggg cgattgaaga gaatggcggc tgggttgtcg gttatgaaaa
     4861 ctgcactggg gcgaaagcga ccgagctaat gcgtggcgga aacgggcgat gtctacgacg
     4921 cgctggcgga taaatatctg gcgattggct gctcctgtgt ttcgccgaac gatcagcgcc
     4981 tgcaaatgct cagccagatg gtggaagaat atcaggtcga tggcgtagtt gatgtgattt
     5041 tgcaggcgtg ccatacctac gcggtggaat cgctggcgat taaacgtcat gtgcgtcagc
     5101 agcacaacat tccttatatc gctattgaaa cagactactc cacctcagat gtcgggcagc
     5161 tcagtacccg tgtcgcggcc tttattgaga tgctgtaagg agtggcagtg acatattcga
     5221 ttggcattga ttctggttct accgccacca aagggatctt actggcagac ggcgtgatta
     5281 cgcgccgttt cctcgttcca acaccctttc gtccggcaac agcaattact gaagcctggg
     5341 aaactctgcg cgaagggtta gagacaacgc cgtttctgac gctcaccggc tatggacggc
     5401 aactggtgga ttttgccgat aaacaagtga cggaaatctc ctgtcacggg ctgggcgcac
     5461 ggtttcttgc gccagcaacg cgcgcggtaa tcgacatcgg tggtcaggac agcaaagtga
     5521 ttcagcttga tgatgacggt aacctgtgcg atttcctgat gaatgacaaa tgcgcggcgg
     5581 gcaccgggcg tttcctggaa gtgatctcgc gcacgcttgg caccagcgtc gagcaactcg
     5641 acagcattac cgaaaatgtc acgccgcatg ccatcacgag tatgtgcaca gtgtttgccg
     5701 aatcagaagt gatcagcctg cgctcagcgg gcgtcgcgcc agaagcgatt ctcgccggag
     5761 tgattaacgc gatggcgcgg aggagtgcca atttcattgc tcgtctctcc tgtgaagcgc
     5821 cgattctgtt tactggtggc gttagtcatt gccagacgtt tgcccggatg ctggaatctc
     5881 acctgggaat gccggtaaat acccatcctg atgcgcaatt tgctggcgca atttgctggc
     5941 gcaattggcg cggcggtaat tggtcaacga gtgaggacac gccgatgaaa gagtttttat
     6001 ttttatttca ctccacagtc ggcgtcatac aaacccgcaa agcgttgcag gcagcgggca
     6061 tgacttttcg cgtcagcgat attccccgtg atttacgcgg cggctgcggg ttatgcattt
     6121 ggctgacctg tccccccggc gaggaaatac aatgggtgat ccctgggctg actgagtcaa
     6181 tttattgcca gcaggatggt gtctggcgct gcattgcaca ttaccgggtt tctccgcgtt
     6241 aaggattcat taaggtcgct acgtatactt ctcgatatct tattgatttg ccttaaaggg
     6301 attaccgtga caaaaagtat ttcgttaagt aaacgcatct ccgttattgt gattcttttt
     6361 gccattgtgg cagtgtgtac tttcttcgtg caatcttgcg cccgtaaaag caatcatgca
     6421 gcatcatttc agaattacca cgccaccatt gacggcaaag aaattgcagg cataacgaat
     6481 aatatctctt cgctgacctg gtcggcacaa agcaatactc tttttagcac tatcaacaaa
     6541 cctgccgcca ttgttgaaat gaccaccaat ggtgatttta tccgcacaat tcctctggat
     6601 tttgttaagg atctcgagac gatcgaatac attggcgata atcagtttgt cattagcgat
     6661 gagcgcgatt acgccattta tgtgatttca ctgaccccaa actcggaagt aaaaatcctc
     6721 aaaaaaataa aaatcccgct gcaagactcc ccaaccaatt gcggttttga agggttggct
     6781 tattctcgcc aggatcacac tttctggttt tttaaagaga aaaatccgat tgaggtctac
     6841 aaagttaacg ggctgttaag tagcaatgaa ttacacatca gcaaagacga ggcactacaa
     6901 cggcaattta ctttagatga tgtgtccggc gcagaattta accagcaaaa aaatacgctt
     6961 ctggtgctgt ctcatgaatc tcgcgcactc caggaagtaa ccctggttgg cgaggttatc
     7021 ggtgaaatat cactaaccaa aggtagtcga ggtttgtcgc ataacatcaa acaggccgaa
     7081 gggattgcga tggatgcctc tggtaatatt tatatcgtta gcgaaccaaa tcgtttttat
     7141 cgctttaccc ctaaatcatc gcattaacag gctggcatat ttcacctttt tgttattaac
     7201 ttgttaacaa caaaaatgac atacaaggtt aaacatgcct tcgtcctcgc atcccgtaga
     7261 acgcttttct ttcagcaccg cgcttttcgg gatgctggtt ctgaccctag gtatgggatt
     7321 aggtcgcttc ctttatacgc ctatgttgcc cgtcattatg gcggaagggg cgttttcatt
     7381 tagccagctc tcgtggattg ccagcggcaa ctatgcgggg tatctggctg gcagtctgct
     7441 attttcgttt ggcgcatttc accagccgtc gcgcctacgc ccatttctgt tggtttctgc
     7501 cctggcgagc gggttgttga tcctcgcaat ggcatggttg ccgccattta ttctggtgtt
     7561 attgattcgc ttcctggcgg gtgtcgccag cgccggtatg ctgatttttg gttcgacgct
     7621 gattatgcag cacacgcgcc atccttttgt gctggcagct ttgttttctg gcgttggcat
     7681 tggcattgca ctgggcaacg aatatgttct ggcaggcctg cattttgcct tctcctcgca
     7741 aacgttatgg caaggcgccg gggcgctttc tggcatgatg ctgattgcac ttacgctttt
     7801 aatgccctcg aaaaaacacg ccatcgcacc aatgccattg gcaaaaacgg agcaacagat
     7861 aatgagctgg tggttactgg ctattctgta cggccttgcg ggatttggtt atatcatcgt
     7921 cgcgacttac ctgccgctca tggcgaaaga tgcaggctca ccattgttaa ccgcccatct
     7981 ctggacgtta gtcggcttat caattgtgcc aggctgcttt ggctggctat gggcagcaaa
     8041 acgttggggg gctttgcctt gcctgacggc gaatttgctg gtgcaggcta tcagtgtgct
     8101 gcttactctc gccagcgact ctcctctctt gcttatcatt agtagtatcg gttttggcgg
     8161 tacctttatg ggcacgacat ctctggtgat gactatcgcc cgccaactga gcgttccggg
     8221 aaatctcaat cttttaggct ttgtgacgct catttacggc attggacaaa tcctcggccc
     8281 ggcgctgacc agtatgctcg gcaatggaac atcggcgctt gccggcgcca ctctctgcgg
     8341 cgcggcggcg ttgtttattg ctgcgcttat cagcacagta caattattta agctgcaagt
     8401 ggtcacttca tgaggagtgt ttcccttacc actcaagaaa ttcgaccgca accgttgatg
     8461 tcagccagac tccgttttcc gcttgccaga aaggaatgcc tcgtttcgcc atttcctgtg
     8521 gtttgacggt taagacaacc ggcgatccgt gtcttgctcc cactttgcgt gccgttgctt
     8581 catcagcaga gagatgcacg taatgacgat cccctgcaat cagcccctgt ttttttatct
     8641 cgtcaaggaa acggcttgcc gtaccgtggt agagaaactg tggcggtgtt ttttcggcaa
     8701 aggaaatagc gacctgcgaa gtcgaatgcc cctgaaccgc gcggatgcac ctaccatcac
     8761 tggaataact aaaacgcttt ttatcgctgg ttgcgaccac ggtatccagc aatgcacggg
     8821 ttaatcgctt gcccgctttt tgggcacaaa gtatgagctt atcgatatcc gcccatcctt
     8881 cacggtccag tacgatacca atcgcctccg gtttgtgtcg gaggacaaaa cttaaaaact
     8941 tgctcgtatc cgccagctct ttttcgttgt gctttgccat ctcgttttcg tccctggatt
     9001 ttctgttttt atttaccaat gtcattgtca ctgggtttat gaattttctg caactcaatc
     9061 ctgcgcagaa ccttttccac acagcgtaat gtttccccta tgcaaaaaac gcatagccag
     9121 aaacatactt gcattttccc catacccaca tggctgataa ggtttttcag ttccaggaat
     9181 tttcctggct caagcaacac acaaacacaa aaaaacaatg gggattgtta tgacacaaca
     9241 aggggatgct gtagccgggg agctggcgac agaaaaagtg ggcattaaag ggtatctggc
     9301 tttttttctc accataatct ttttttccgg tgttttttcc ggaacagaca gctggtggcg
     9361 cgtttttgat ttttccgttc tgaacggatc gtttgggcaa ctgcctggtg cgaacggagc
     9421 caccacctca tttcgcggcg cgggtggtgc gggggctaaa gatggctttc tctttgcgct
     9481 ggagctggca ccgtcagtca ttctctctct ggggattatt tcaattaccg atggtcttgg
     9541 tggattacgc gccgcgcagc agttaatgac acctgtgcta aaaccgttgt tgggcattcc
     9601 agggatctgc tcgctggcgc tgatcgctaa cttgcaaaac actgatgccg ccgccggtat
     9661 gaccaaagag ctggcgcagg aaggtgaaat taccgaacgc gataaagtga ttttcgccgc
     9721 atatcaaacc agcggtagcg ccatcatcac caactacttc tcttccggcg tcgcggtgtt
     9781 cgcctttctg ggcacgtccg taatcgtacc tttagccgtc atcctggtgt ttaaatttgt
     9841 cggagccaac attttgcgcg tctggcttaa cttcgaagaa cgtcgcaacc caacgcaagg
     9901 agcgcaagca tgacaactca ggtccgcaaa aacgtcatgg atatgtttat cgatggcgcg
     9961 cgccgtggct ttactatcgc cacgaccaac ctgctgccaa acgtggtgat ggcgtttgtc
    10021 atcattcagg cgctgaaaat taccggcctg ctcgactggg tggggcatat ctgtgaaccc
    10081 gtaatggcgc tgtggggatt acccggtgaa gcggcaaccg tccttttagc cgcattaatg
    10141 agtatgggtg gcgcagtcgg tgttgccgcc agtctggcaa ccgctggcgc attaaccggt
    10201 cacgatgtca ccgttttact gcccgcgatg tatttaatgg gcaacccggt gcaaaatgtc
    10261 ggtcgctgcc tggggacagc cgaagtgaat gccaaatatt acccgcatat cattacggtc
    10321 tgcgtgatta acgcattgct gtcgatctgg gttatgcagc ttattgttta acaaggagtt
    10381 accatgattg attataccgc agccggtttt accctgctgc agggagcgca tttgtatgca
    10441 ccggaagatc ggggaatttg cgatgtcctc gtcgctaacg gcaaaattat cgccgttgcc
    10501 agcaatatcc cttctgacat tgtaccgaac tgcacggttg tcgatctcag tgggcagatc
    10561 ctctgcccag gttttattga tcaacacgtc catttgattg gcggtggcgg cgaagcaggt
    10621 cccacgacgc gcacgccgga agtggcgcta agtcgcctga cggaagcggg cgtcacgtca
    10681 gtggttggtc tgctgggcac cgactctatc tctcgccacc cggaatccct gctcgccaag
    10741 acccgtgcgc tcaatgaaga aggcatcagc gcctggatgc tgaccggcgc ttatcatgtc
    10801 ccttcccgca ctattacggg ttccgtggaa aaagacgtgg cgattatcga tcgtgtgatt
    10861 ggcgtgaaat gcgccatctc tgatcaccgt tctgccgcac cggacgttta tcacctggct
    10921 aatatggcgg cagaatcccg cgttggcggt ttgctcggca gtaaacctgg cgtcaccgtg
    10981 ttccacatgg gcgacagtaa aaaggcgtta cagcctattt atgacctgct ggaaaactgc
    11041 gatgtgccga tcagcaagct gctgccgacc cacgttaacc gcaacgtacc gttgtttgag
    11101 caggcgctgg agttcgcgcg caaaggcggc accatcgata tcaccagcag cattgacgaa
    11161 ccggtcgccc ctgccgaagg tattgcccgc gccgttcagg cgggtattcc gctggcacgc
    11221 gtcaccctca gctccgacgg caacggtagc cagccgttct tcgatgacga agggaattta
    11281 acccatatcg gtgttgcagg ttttgaaacg ttgctggaaa ccgtgcaggt gctggtcaaa
    11341 gactatgatt tcagtatcag cgatgccctg cgcccgctca ccagtagcgt agccggtttc
    11401 cttaacctga gcgggaaagg cgaaattctg cctggcaatg acgcagactt actagtcatg
    11461 acgccagaat tgcgcattga gcaggtatat gctcgcggca aactgatggt caaagacggc
    11521 aaagcctgcg tgaaaggaac gtttgaaacg gcttaaacgg ttgtcagccg ccctaatgga
    11581 cgtagaatgc ccgcaagggc ggctgacaga gtaaaacgta atggatgact gtggtgcggt
    11641 tttgcataat attgaaacca aatggcttta tgattttctg accctggaaa aatgccgcaa
    11701 tttttcccag gcggcagtca gtcgtaacgt ctcgcaaccg gcattcagcc gccgcatccg
    11761 cgcgctggaa caggcgattg gcgttgaatt gtttaaccgc caggtgacgc cgctgcaact
    11821 ctcagaacaa gggaaaatct tccattcgca gatccgccat ctgttgcaac agttagaaag
    11881 taaccttgca gagctgcgtg gcggcagcga ttacgcgcaa cgtaaaatca agatagccgc
    11941 tgcacactct ctttccctcg gtctgttacc gtccattatc agccagatgc cgccgctctt
    12001 tacctgggcg attgaagcta ttgatgtcga tgaagcagtc gataaactgc gtgaagggca
    12061 aagtgactgt attttttcct ttcacgacga agatttgctg gaagcaccgt ttgaccacat
    12121 tcgcttattt gaatctcaat tgttccccgt ttgcgccagt gacgaatacg gagaagcaat
    12181 ttttaacctc gcgcagccac actttccgtt actgaattac agccgcaact cctatatggg
    12241 gcgattgatt aatcgcaccc tgacgcgcca cagcgagtta agtttcagca ccttttttgt
    12301 ctcttcgatg agcgagctat taaagcaggt tgccctcgac ggctgtggga ttgcctggct
    12361 gccggagtat gccatccaac aagaaattcg cagcgggcaa ctcgttgtgc tgaatcggga
    12421 cgaactggtg atcccgattc aggcctacgc ataccgtatg aatacccgca tgaatccagt
    12481 tgccgaacgc ttctggcgtg aactgcgcga gctggagatt gtgcttagct gacattctca
    12541 agcgtcgcac tgcgccaacc gccattatcc cagaccagat caaacgttag cggttcatcg
    12601 tcgtggtaca gcattatctc aaggctgatc gccagagtgt ggcagtacgc ttctttcaaa
    12661 ttaacctgca acgccgcaat ccgtggctca tgaaataaca gtgcagaacg cagctgacgg
    12721 caataccagc tctggagatg tttgtcgctc gggttatgca cttgccactc gggcatgcct
    12781 gaaacaagta atgacggtaa tgccgaatga ggagaattaa aaagagtgag gagagcgctg
    12841 cataccgatt tacgcagcaa tgacgtttta ttgcctgaaa tttcaggtaa aacagcctga
    12901 agtgattggc gcatcatttt gcgcactcct gacgtttagc aacatatgcg gcttgccctg
    12961 aacaccgggc accactgtat tgatgc
//
LOCUS       DAJVUN010000117        12621 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.117, whole genome shotgun sequence.
ACCESSION   DAJVUN010000117 DAJVUN010000000
VERSION     DAJVUN010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12621
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.117"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(322..1662)
                     /gene="fadL"
                     /locus_tag="OQQ76_002786"
     CDS             complement(322..1662)
                     /gene="fadL"
                     /locus_tag="OQQ76_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708225.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid transporter FadL"
                     /protein_id="HCS1969222.1"
                     /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG
                     EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA
                     WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR
                     LNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTPQGQALAATANGIDS
                     NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG
                     LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST
                     SGNTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF
                     WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF"
     gene            2034..2318
                     /locus_tag="OQQ76_002787"
     CDS             2034..2318
                     /locus_tag="OQQ76_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HCS1969223.1"
                     /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTL
                     AALTEKARSVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR"
     gene            2498..3808
                     /gene="fadI"
                     /locus_tag="OQQ76_002788"
     CDS             2498..3808
                     /gene="fadI"
                     /locus_tag="OQQ76_002788"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HCS1969224.1"
                     /translation="MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV
                     VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS
                     FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLF
                     SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS
                     DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT
                     DGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTM
                     SDLTLIDMHEAFAAQTLANIQLLGSERFAREVLGRAHATGEVDDSKFNVLGGSIAYGH
                     PFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE"
     gene            3808..5952
                     /gene="fadJ"
                     /locus_tag="OQQ76_002789"
     CDS             3808..5952
                     /gene="fadJ"
                     /locus_tag="OQQ76_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadJ"
                     /protein_id="HCS1969225.1"
                     /translation="MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIK
                     QLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPI
                     PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG
                     VSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKDRPSSRPLPVRERI
                     LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL
                     AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGLP
                     VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI
                     IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSP
                     VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR
                     MLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV
                     SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQGRLSAPQVAERCVM
                     LMLNEAVRCVDEQVIRSVCDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA
                     TQYGSRFTPCERLVEMGARGESFWKTTATDLQ"
     gene            6155..6640
                     /gene="sixA"
                     /locus_tag="OQQ76_002790"
     CDS             6155..6640
                     /gene="sixA"
                     /locus_tag="OQQ76_002790"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HCS1969226.1"
                     /translation="MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVE
                     IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS
                     VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA
                     I"
     gene            7315..7575
                     /locus_tag="OQQ76_002791"
     CDS             7315..7575
                     /locus_tag="OQQ76_002791"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1969227.1"
                     /translation="MSKFVKTAIAAAMVMGVFTSTATIAAGNNGTARFYGTIEDSVCS
                     IVPDDHKLEVDMGDIGAEKLKNNGTTTPKSFQIRLQDCVFDT"
     gene            7582..7878
                     /locus_tag="OQQ76_002792"
     CDS             7582..7878
                     /locus_tag="OQQ76_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1969228.1"
                     /translation="MTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSY
                     KSGMGIDQKIVKDTSTNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQITYL"
     gene            7960..10602
                     /gene="yfcU"
                     /locus_tag="OQQ76_002793"
     CDS             7960..10602
                     /gene="yfcU"
                     /locus_tag="OQQ76_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher protein YfcU"
                     /protein_id="HCS1969229.1"
                     /translation="MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKG
                     DTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDASKSYACLTPELV
                     AQFGLKEDVAKNLQWSHDAKCLKSGQLEGMEIKADLSQSALVISLPQAYLEYTYPDWD
                     PPSRWDDGISGIVADYSINAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNY
                     QHTRSNDDDEFSGDETQKKWEWSRYYAWRALPSLKAKLALGEDYLRSDIFDGFNYVGG
                     SVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSV
                     SGTLHIRIEEQNGQVQEYDISTASMPYLTRPGQIRYKIMMGRPQEWGHHVEGEFFSGA
                     EASWGIANGWSLYGGALGDENYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGK
                     GSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYLDASDSGMVRTGNDKEM
                     YTATYNQNFRDAGVSVYLNYTRHTYWDREEQINYNIMLSHYFNMGSIRNVSISMTGYR
                     YEYDNQADKGMYISLSMPWGDNSTVSYNGNYGSGTDSSQVGYFSRVDDATHYQLNVGT
                     SDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRIQNMG
                     GTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVNNYYRNQAYIDLNRLPENAEAT
                     QSVVQATLTEGAIGYRKFAVISGQKAMAVLRLSDGSHPPFGAEVKNDNEQTVGLVDDD
                     GNVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLLLPCQHKGNVAPITSPAV
                     KPAIQEQTQRVTPTEPPTSISVNQ"
     gene            10622..11374
                     /locus_tag="OQQ76_002794"
     CDS             10622..11374
                     /locus_tag="OQQ76_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000482750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HCS1969230.1"
                     /translation="MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDK
                     SISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDI
                     NKLPADRESVFYFNVREIPLKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
                     TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPV
                     LTYINDYGARMPLYFKCTGNSCQVDEEQSRKG"
     gene            11390..11899
                     /locus_tag="OQQ76_002795"
     CDS             11390..11899
                     /locus_tag="OQQ76_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001733155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1969231.1"
                     /translation="MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPP
                     PCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETV
                     LSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
                     TMTMVVDYQ"
     gene            11896..12384
                     /locus_tag="OQQ76_002796"
     CDS             11896..12384
                     /locus_tag="OQQ76_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1969232.1"
                     /translation="MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIE
                     VQFSDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVP
                     GFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKVADAVLTDTTFSAYATLRVD
                     YQ"
     gene            12381..>12621
                     /locus_tag="OQQ76_002797"
     CDS             12381..>12621
                     /locus_tag="OQQ76_002797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016242288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1969233.1"
                     /translation="MKTAHIYSPGYALLAGLLLTASTGAQAVDNNLHFYGNLLSKSCT
                     LVVDGANLAEIHFPTVSNRDLMVSGQSAHLPVVFKL"
BASE COUNT         3177 a         3004 c         3355 g         3085 t
ORIGIN      
        1 cccggatcat ggacgactgg gggcagtaat catgccgggt ctggctggct aacaccccat
       61 tataaggggt acgaataaag taacgggagt atcctggaaa tgcagaaaag taaactcttt
      121 gagaaggacg agcagaacgc ctgaaaatat gcctttccct tcaggtttgt ctgtggatac
      181 cgcttattga tttgaaaggg caagctgcca acaggctgtt tgcaaaactc aggaggtaag
      241 caatgaggac actactttcg gtgaagtggg ggagttaaag tcacctgcta tgcaggtgac
      301 tttatccagg cgaacgcgtt atcagaacgc gtagttaaag ttagtaccga acagccaggc
      361 tttaccttca gactcgaact ggtatgggcc ttcgttaatt ttcacgctct gaccgtgcat
      421 ataagaaaca ccaacgtcga ctgaagcatc tttattaaat gcgtaagtcg tacctgcact
      481 cagccagaaa cggtcctggt ccggaatgga gatagaacga ttctgagccg gaactgggct
      541 gtcatcaaag gcgataccgg tacggaaggt ccagttatca tcgtagtaat aagtggtacc
      601 caacgcgatg cggtaagcat ctttaaagcc ttcatgtttc tggaacagcg tgttgccact
      661 ggttgaggtc gctttcagct gctggaactg actccagctg gtgtaagcca ggctatagtg
      721 aatcgcccac tgtggatcaa cacggttata acctgacact tcccacattt caggcaggtt
      781 cagcgtcaga taacccgatt gcgttgcgcc acctgtcgcg gtaggaattg gcaaaccgta
      841 gttattaaac gcacgattaa gatcgctgct gtagttacct ttgaagtcaa ttttcacttc
      901 agaacggtag gtcagtgcat agcggttatt tttatccagt tcatacagga ttccggcgtt
      961 ccagccaaag ccccactggt taccgttcag atgagcgatt ttggtattac tgtcgatacc
     1021 gttggcggta gctgccaatg cttgcccttg aggagtttgc ccggcaggag attgcataat
     1081 ctgaccagca accaactgcc ccagatcgcc tgcgaaacgt tcaattttcg cgcgagcgta
     1141 gacggcgttg aaaccaagac caaagctcca tgcattattt aagcgatacg caccgcttaa
     1201 gttcaggttc atggtttcaa ggtcagttgt acccccgaca gagccgcctg cataagtatc
     1261 attaaactct gttgccagac catagttaga ggtaatagaa gcgccccaac caaattggtc
     1321 gttaatcggt gcaacaaagt gcatgttcgg aacccatgcc gtaggcgcga tgttatcggc
     1381 tttcaggcta cgaccagacg gagacgttcc gctgatattc acatccgggt caatataaac
     1441 cgcacccgca gaaaatgtcg ggcggtcaaa catggtaatc aatgcggggt tacggctaac
     1501 gttacctgca tcatcggcaa ttgcgccttc ccctgaataa gcccggccca ggccagagga
     1561 agaaaattcg tttaactgaa agcctgccga ccaggcctgg gtggagataa gtgccactgc
     1621 gactgcgaga gcagactttg taaacagggt tttctggctc atgaccataa cctcaatgat
     1681 ttatttttat acaaactatg ttacgtgctg taacaggagc gcgaagtgta gggtctgagg
     1741 tacatcttag aaatcagacc agtggcgaga gtataggtcg gaccagctgg aatgttgcaa
     1801 gtatgtttcc atcttttttc aaatatgatc taagaaacgc gatccagctg gcaaaatttg
     1861 gaggttgcgc actcgcggat tcgggtgaat tttgttttag agcattttta agtgtgattt
     1921 cggtcactta tccgattttg cagaattaac aactggagca gcactttccg gaagcgtaaa
     1981 atatccacaa cgtttatctg gcaccttggg tgcacataca gaggaaatca acgatgagta
     2041 aatgtagtgc tgatgaaacc ccggtttgct gctgtatgga tgttggcacc attatggaca
     2101 actccgactg caccgcgtct tacagccgcg tgtttgcaaa ccgcgcagaa gcagaacaaa
     2161 cgctggcggc gttgactgaa aaagcccgta gcgtggaatc cgaaccgtgc aaaatctccc
     2221 cgactttcac tgaagagtct gacggtgtgc gcctggatat cgatttcact tttgcctgcg
     2281 aagctgaaat gctgatcttc cagctgggtc tgcgttaatt cctctcgggt acgttcgccc
     2341 ctgtcagttg ctggcagggg cgttttcttt tctttctcct gtcttcactg tgtcatagct
     2401 cccactttcc tttttctccg cttggctaaa tgtaaaaaaa tggttaagac tatgatcagg
     2461 tcagaccact ttatttattt ttttacaggg gagtgttatg ggtcaggttt taccgctggt
     2521 tacccgccag ggcgatcgta tcgccattgt tagcggttta cgtacgcctt ttgcccgcca
     2581 ggcgacggct tttcatggca ttcccgcggt tgatttaggg aagatggtgg taggcgaact
     2641 gctggcacgc agcgagatcc ccgctgaagt gattgaacag ctggtctttg gtcaggtcgt
     2701 acaaatgcct gaagccccca acattgcgcg tgaaattgtt ctcggtaccg gaatgaatgt
     2761 gcataccgat gcttacagcg tcagccgcgc ttgcgctacc agtttccagg cggttgcaaa
     2821 cgtcgcagaa agcctgatgg cgggaactat ccgagcgggg attgccggtg gggcagattc
     2881 ctcttccgta ttgccaattg gcgtcagtaa aaaactggcg cgcgtgctgg ttgatgtcaa
     2941 caaagctcga accatgagcc agcgcctgaa actcttctct cgcctgcgtt tgcgcgattt
     3001 aatgcccgta ccgcctgcag tagcagaata ttctaccggc ttgcggatgg gtgacaccgc
     3061 agagcaaatg gcgaaaacct acggcatcac ccgagaacag caagatgcat tagcgcaccg
     3121 ttcgcatcag cgtgccgctc aggcatggtc agacggaaaa ctcaaagaag aggtgatgac
     3181 tgcctttatc cctccttata aacaaccgct tgtcgaagac aacaatattc gcggtaattc
     3241 ctcgcttgcc gattacgcaa agctgcgccc ggcgtttgat cgcaaacacg gaacggtaac
     3301 ggcggcaaac agtacgccgc tgaccgatgg cgcggcagcg gtgatcctga tgactgaatc
     3361 ccgggcgaaa gaattagggc tagtgccgct ggggtatctg cgcagctacg catttactgc
     3421 gattgatgtc tggcaggaca tgttgttcgg tccggcctgg tcaacaccgc tggcgctgga
     3481 acgtgccggt ttgacaatga gcgatctgac attgatcgat atgcacgaag cctttgcagc
     3541 tcagacactg gcgaatattc agttgctggg tagtgaacgt tttgctcgtg aagtactggg
     3601 gcgtgcacat gccactggcg aagtggacga tagcaaattt aacgtgcttg gcggttcgat
     3661 tgcttacggg catcccttcg cggcgaccgg cgcgcggatg attacccaga cattgcatga
     3721 acttcgccgt cgcggcggtg gatttggttt agttaccgcc tgtgctgccg gtgggcttgg
     3781 cgcggcaatg gttctggagg cggaataatg gaaatggcat cagcgtttac tcttaatgtt
     3841 cgtctggaca acattgctat catcaccatc gacgtaccgg atgagaaaat gaataccctg
     3901 aaggcggaat ttgcctcgca ggtgcgcgcc attattaagc aactccgtga aaacaaagag
     3961 ttgcgcggcg tggtgtttat ctccgcgaaa ccggacaatt ttatcgccgg agcagacatc
     4021 aacatgatcg gcaactgcaa aacggcgcaa gaagcggaag ctctggcgcg gcagggccaa
     4081 cagttgatgg cggagattca tgctttgccc attccggtta tcgcggctat tcatggcgct
     4141 tgcctgggtg gtgggctgga gttggcgctg gcgtgccacg gtcgcgtttg tactgacgat
     4201 cctaaaacgg tgctcggttt gcctgaagta caacttggat tgttacccgg ttcaggcggc
     4261 acccagcgtt taccgcgtct gataggcgtc agcacagcat tagagatgat cctcaccgga
     4321 aaacaacttc gggcgaaaca ggcattaaag ctggggctgg tggatgacgt tgttccgcac
     4381 tccattttgc tggaagtcgc tgttgagctg gcgaagaagg atcgcccatc ttcccgccct
     4441 ctacctgtac gcgagcgtat tctggcgggg ccgttaggtc gtgcgctgct gttcaaaatg
     4501 gtcggcaaga aaacagaaca caaaactcaa ggcaattatc cggcgacaga acgtatcctg
     4561 gaggttgttg aaacgggatt agcgcagggc accagcagcg gttatgacgc cgaagctcgg
     4621 gcgtttggcg aactggcgat gacgccacaa tcgcaggcgc tgcgtagtat cttttttgcc
     4681 agtacggacg tgaagaaaga tcccggtagt gatgcaccgc ctgcgccatt aaacagcgtg
     4741 ggaattttag gtggtggctt gatgggcggc ggtattgctt atgtcactgc ttgtaaagcg
     4801 gggcttccgg tcagaattaa agatatcaac ccgcagggca taaatcatgc gctgaagtac
     4861 agttgggatc agctggaggg caaagttcgc cgtcgtcatc tcaaagccag cgaacgtgac
     4921 aaacagctgg cattaatctc cggaacgacg gactatcgcg gctttgccca tcgcgatctg
     4981 attattgaag cggtgtttga aaatctcgaa ttgaaacaac agatggtggc ggaagttgag
     5041 caaaattgcg ccgctcatac catctttgct tcgaatacgt catctttacc gattggtgat
     5101 atcgccgctc acgccacgcg acctgagcaa gttatcggcc tgcatttctt cagtccggtg
     5161 gaaaaaatgc cgctggtgga gattattcct catgcgggta catcagcgca aaccatcgcc
     5221 actacggtaa aactggcgaa aaaacagggc aaaacgccca ttgtcgtgcg tgacaaagcc
     5281 gggttttacg tcaatcgcat cttagcgcct tacattaatg aagctatccg catgctgacc
     5341 aaaggtgaac gggtagagca cattgatgcc gcgctagtga aatttggttt tccggtaggt
     5401 ccaatccaac ttttggatga ggtaggaatc gacaccggga ctaaaattat tcctgtactg
     5461 gaagccgctt atggagaacg ttttagcgcg cctgcaaatg ttgtttcttc aattttgaac
     5521 gatgatcgca aaggcagaaa aaatggtcgg ggtttctatc tttatggtca gaaagggcgt
     5581 aaaagcaaaa aacaggtcga tcccgccatt tacccgctca ttggcgcaca agggcagggg
     5641 cgactctccg caccgcaggt tgctgaacgg tgtgtgatgt tgatgctgaa tgaagcagta
     5701 cgttgtgttg atgagcaggt tatccgtagc gtgtgtgacg gggatattgg tgcggtattt
     5761 ggcattggtt ttccgccatt tctcggtgga ccgttccgct atatcgattc tctcggcgcg
     5821 ggcgaagtgg ttgcaataat gcaacgactg gccacgcagt atggttcccg ttttacccct
     5881 tgcgagcgtt tggtcgagat gggcgcgcgt ggggaaagtt tttggaaaac aactgcaact
     5941 gacctgcaat aagaaggtca aagctatatg aatccgcgct gaatggcgga gtattggtca
     6001 aaatgtaaac gcatattgac tatacttacg ccattgaggt aaaaaacagc gtttcattcg
     6061 gtgaatggat aaggcacaat gccggccacc gttttctttc tctggtttca gatgaaagaa
     6121 aatgggcgaa tctggttaac aaaagcggtg caatatgcaa gtttttatca tgcgtcacgg
     6181 cgacgcagcc ctcgatgccg ccagtgattc ggttcgtcct ctgaccacta atggttgtga
     6241 cgaatctcgc ctgatggcga actggctgaa aggtcaaaaa gtggaaatcg aacgcgttct
     6301 ggtgagcccg ttcctgcgag ccgagcaaac actggaagaa gtaggggatt gtctgaacct
     6361 gccttccagt gcagaagttc tgccggagtt aacgccctgc ggcgatgttg gtctggtcag
     6421 tgcctatttg caggcgttga ccaatgaagg tgttgcttcg gtactggtga tctctcactt
     6481 accgttagtc gggtatctgg ttgccgagtt atgtccgggc gaaacgccgc ctatgtttac
     6541 cacctcggcc attgccagcg taacgcttga tgaaagcgga aacggtacat tcaactggca
     6601 gatgagcccg tgtaatctga agatggcaaa agctatctga tgtgttccaa attatgccca
     6661 atgaggtaga ttcattgggc ataattgctc atcaggcagc ggatatctgt caacctcact
     6721 actatcgaag actctcctta tctataaata aaacactttc tacattcatt cggaaattat
     6781 tcttctgcgc gtatcttgat tttgcccaaa gttacatgtt gaaatgaata atgtctgttt
     6841 gacactcatt gtcatttatt aatacagata atagagttga ataatcaggc aggatgtaat
     6901 tgaaacttga ttaaattctg gctatagtgt ttatatatta tattgtcaaa agtggataaa
     6961 tgccaatcgc attatatgtt cattgtttgt tttttaagct gttgatattc attattgata
     7021 tactttctat tttttctaaa tacttattcc gtatttttta aggatgtcct taagataatc
     7081 tttcttctgt caatatatta attaaatcta catttactct ttagtaaaat taaattgcat
     7141 caggggtgtg gaaacatcac tatgcggccc cacaccaacg aatacaattt tctacgacct
     7201 gttctttttg gatcgcatgc cgtattcaat ggctgggtat aaacattggc tattgactga
     7261 atcaatgtat tgcaatgttt atatttttaa ttatttatag tttaaggaca aataatgagt
     7321 aagtttgtta aaacagctat tgctgcggca atggtgatgg gcgtgttcac ctctacggca
     7381 acaatcgctg cgggtaacaa cggtactgca cgtttttacg gcaccattga agactcagtg
     7441 tgttctatcg ttccggacga tcacaaactg gaagttgata tgggtgatat cggtgccgaa
     7501 aaactgaaaa ataacggcac caccacgccg aaaagtttcc agattcgtct gcaagattgc
     7561 gtatttgata cttaggaaac aatgaccact acctttactg gtaccgtttc ttctgcaaat
     7621 agcggcaatt attacaccat tttcaatacc gataccggtg cggcatttaa caatgttagc
     7681 ctggcgatcg gtgactctct gggtacctct tacaaaagcg gcatgggtat tgaccagaaa
     7741 atagtgaaag acacttctac taataaaggc aaagcgaagc agacactgaa ctttaaagcc
     7801 tggctggtcg gcgcagctga tgcgccagat ctgggtaatt tcgaagcaaa taccaccttc
     7861 cagattactt acctgtaagg cataccccca tagcgacact gctatggggg atttaaatgg
     7921 attttgaccg aacaagaata aaaacggata gaaacgtgta tgcctgacca ttctcttttt
     7981 cgattacgga ttcttccgtg gtgcattgcg ctggcaatgt cagggagtta tagcagtgtc
     8041 tgggctgaag acgacattca gtttgattcc cgttttctgg aattaaaagg cgacacaaaa
     8101 attgatctga agcgtttttc cagccaggga tatgttgagc ccggaaaata caatttacag
     8161 gttcaactaa ataaacagcc attggcggaa gagtacgata tttactggta tgctggtgaa
     8221 gatgacgcga gcaaaagcta tgcttgtctg acaccggaac tggtagcgca gtttggttta
     8281 aaagaagacg tggcgaaaaa tctgcaatgg agccacgatg ctaaatgcct gaaatccggt
     8341 caactggaag gcatggaaat taaggctgat ttaagccagt ccgcattagt catttcactg
     8401 ccacaggctt acctcgaata tacttatccc gactgggatc cgccttcacg ttgggatgac
     8461 ggcatctccg ggatcgtcgc ggactacagc atcaacgcac aaacccggca cgaagaaaat
     8521 ggcggtgatg atagtaacga gatcagcggc aacgggacgg tcggggttaa cctggggccg
     8581 tggcgtatgc gtgctgactg gcagactaac tatcaacata ctcgcagtaa tgatgacgat
     8641 gaattcagcg gcgatgaaac tcaaaaaaaa tgggagtgga gtcgctacta tgcctggcgg
     8701 gcgttaccat cattaaaagc caaactggcg ctgggcgagg attacctcag atccgatatt
     8761 tttgatggtt ttaactatgt tggtggcagt gtcagtactg acgatcaaat gttgcctccc
     8821 aatctgcgcg gctacgcgcc agacatttcc ggcgtggcac acaccacagc aaaagtgacc
     8881 gtcagccaga tggggcgtgt gatttacgaa acgcaggttc cggctggacc gtttcgtatt
     8941 caggatcttg gtgattctgt ctccggtacg ttgcatattc gcattgaaga acagaacggc
     9001 caggtgcagg aatatgacat cagcaccgcc tcgatgccat acctcactcg tccaggtcag
     9061 attcgctata agatcatgat gggccgtccg caagagtggg gacaccatgt cgagggtgaa
     9121 tttttttctg gtgctgaagc ttcctggggg atcgctaacg gctggtcgtt atatggcggc
     9181 gcactgggag atgaaaacta tcagtctgcg gcgcttggcg tcggtcgcga tttgtctaca
     9241 ttcggcgcgg tcgcgtttga tgttactcac tcgcacacca aactggataa agacaccgct
     9301 tatggcaaag gttcgctgga cggtaactcc ttccgtgtga gttattccaa agactttgac
     9361 cagctcaaca gccgcgttac ttttgctgga tatcgcttct cggaagagaa ctttatgacc
     9421 atgagcgagt atctggatgc cagtgacagc ggaatggtac gcacgggcaa cgacaaagag
     9481 atgtacaccg ccacttataa ccagaacttc cgcgatgcgg gtgtttcggt ttatctcaac
     9541 tatacccgcc atacctactg ggatcgcgag gagcagataa actacaacat catgctctcg
     9601 cactatttca atatgggcag tattcgtaat gtcagcatct cgatgactgg ctaccgttac
     9661 gagtatgaca accaggccga caaaggcatg tacatttcgc tcagtatgcc gtggggcgac
     9721 aacagtaccg ttagctataa tggtaactat ggcagtggga cggacagcag tcaggtcggt
     9781 tatttcagcc gtgtcgatga cgcgactcac tatcagttga acgtcggcac cagtgacaaa
     9841 cacaccagcg ttgacggcta ttacagccat gatggttcgc tggcgcaggt tgacctcagt
     9901 gcgaactacc atgaagggca atacacctct gcgggcttgt cgttacaggg cggcgcaacg
     9961 cttactgccc acggtggcgc acttcaccgt atccagaata tgggcgggac acgcttgttg
    10021 attgatgccg atggcgttgc cgatgttccg gtggaaggta acggggctgc tgtttatacc
    10081 aatatgtttg gtaaagccgt cgtttctgac gtcaataact attaccgcaa tcaggcgtat
    10141 atcgacctca acagattgcc tgaaaacgct gaagcaaccc agtcggtggt gcaagccacg
    10201 ctaactgaag gtgccattgg ctaccgtaaa tttgctgtca ttagcggaca aaaagcgatg
    10261 gcggtgctgc gcctgagcga cggcagccat cctccgtttg gcgcagaagt aaaaaatgat
    10321 aacgagcaga cagtgggcct tgtcgatgat gacggcaatg tttatctggc tggggtgaaa
    10381 cctggcgaac acatgagtgt gttctggagt ggtgttgcgc attgcgatat caacctgccg
    10441 gacccgctgc ctgccgatct gtttaacggc ttgttactgc catgccagca taaaggcaat
    10501 gtagcaccta tcacttcgcc ggcggtcaaa ccggcgattc aggaacagac acagcgggtg
    10561 acgccaacgg aacctccgac ttcaatttca gtaaaccagt aacgtgatta aggaatgatc
    10621 catgtttaat ctgactaaca ctgcaaaaat cgttgtcccg gcactggcgc tgctggcgac
    10681 agcggtcagt ttctccagcc acgcttcggt gacgcccgac aggacacggc tggtgtttaa
    10741 cgaaagcgac aagtccatca gcgtcacgct gcgcaacaac gatcccacac tgccttatct
    10801 ggcgcagagc tggatagagg atgcaaaggg caacaaaatc agctcgccgc ttgcggtgct
    10861 tccgccagtg cagcgcatcg atgcgatgat gaacggccag gtgaaggtgc aggggctgcc
    10921 ggatatcaac aaactgccgg ccgaccgcga gagcgtgttc tatttcaacg tgcgcgaaat
    10981 tccgctgaaa tcaaataaac cgaacacact gcagattgcg ctgcagacgc gtatcaaact
    11041 gttctggcga ccgaaggcgc tggagaacac cagcatgaaa agtccgtggc agcataaggt
    11101 gacgctcatc cgtaacggcc aggacttcac cgtcaataac ccgacgccgt actacgtgat
    11161 catcagcaac gccagcgcta aaaaaggcgg caacccgccg gcgggattca caccgctgat
    11221 gatggagccg aaaacctccg caccgctgaa tgcgaagatg gacagcgtgc cggtgctgac
    11281 ttacatcaac gactacggcg cgcggatgcc gctgtacttc aaatgcaccg gcaacagctg
    11341 ccaggtggat gaagagcaga gccgcaaagg ctgatgccgg gagggactta tgagtcacaa
    11401 gtttgtagcg ggcgcagggt tgctggtgct ggccggatgg ggcatcagcg gtttggctgt
    11461 tgctggcagt gatatcaaac aggtggatct gacgctgcga atcctggtcg atggaccgcc
    11521 gccttgctcc gtgaagggaa gcgctgtgaa atttggcaat gtgataatca acaggatcga
    11581 tggtaccaat taccaacagg atgcgaaata caccctcaac tgcggtaata aagtcagcga
    11641 tgacttacgg atgcagctca aaggcaatac cgccgtgatc aacggagaaa cggttctcag
    11701 cacggatatc gccggcctgg gggtgcggat agaaaacgcc gccgacaact ccctgtttgc
    11761 agttggtgaa aataactgga cgccttttaa tgtcaacact cagcctcagc tgaaagcggt
    11821 gccggtaaaa cagagcgggg tgcaactgac gccgtcggag tttaacgcca cgatgaccat
    11881 ggtggtggat taccaatgaa aaaattcctg ctccttttac tgtgcgctgg ttgcggggct
    11941 gtgctggcgg cggaagatga catcacattc cacggtacgc tgatgtcgcc gcccgcctgt
    12001 agcatcagcg gcgggcaaac catcgaagtg caatttagcg atctcattat cgacagcatt
    12061 gatggcaatt atggtcgtca gaaagtggac tacgaactga gctgcgactc ggatgtccgc
    12121 gatcccgagt ggaatatgac actctcctgg acggggactg ccacctccta caacgactct
    12181 gctattgaga cggatgtacc gggcttcgga attgagcttc agcatgacgg tcagcgtttt
    12241 aagctcaacg agccgctttc cattaacgcc accgatttta gccagaagcc aaagctggag
    12301 gcggtaccgg tcaaagtggc tgatgcggtg ctgacggaca cgaccttttc tgcttacgca
    12361 accttacggg tggattacca atgaaaacag cacacattta ttcacccggt tatgcgctgt
    12421 tagcaggcct gctgctgacc gccagcacag gagcacaggc agtcgacaac aacctgcatt
    12481 tttacggcaa cctgctgagt aaatcctgca cgctggtggt ggatggtgcc aacctggcag
    12541 aaatccattt tcccaccgtc agcaaccggg atttgatggt atctgggcag tccgcgcatc
    12601 tgccggttgt gtttaagctg a
//
LOCUS       DAJVUN010000118        12600 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.118, whole genome shotgun sequence.
ACCESSION   DAJVUN010000118 DAJVUN010000000
VERSION     DAJVUN010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12600
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.118"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1329
                     /gene="bcsG"
                     /locus_tag="OQQ76_002798"
     CDS             <1..1329
                     /gene="bcsG"
                     /locus_tag="OQQ76_002798"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HCS1969234.1"
                     /translation="MIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFSL
                     WPAGQPTTTVTTTGGNAAATVATTGGAPVVGDMPAQTTPPTTANLNAWLNNFYNAEAK
                     RKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATSY
                     SGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKE
                     VRENGGMQTELMDQTNLPVILLGFDGSPVYDDTAVLNRWLDVTEKDKNSRSATFYNTL
                     PLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGDR
                     MQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGKI
                     FTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ"
     gene            complement(1416..1523)
                     /locus_tag="OQQ76_002799"
     CDS             complement(1416..1523)
                     /locus_tag="OQQ76_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HCS1969235.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
     gene            1999..3270
                     /locus_tag="OQQ76_002800"
     CDS             1999..3270
                     /locus_tag="OQQ76_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1969236.1"
                     /translation="MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGL
                     KGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYF
                     LMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLF
                     KISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQ
                     VLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAF
                     EQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRII
                     DTKKINSRMLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKV
                     AQLEKLRGFKAWLILLYGILLCLSPLLKLIE"
     gene            complement(3300..4304)
                     /gene="dppF"
                     /locus_tag="OQQ76_002801"
     CDS             complement(3300..4304)
                     /gene="dppF"
                     /locus_tag="OQQ76_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP binding subunit
                     DppF"
                     /protein_id="HCS1969237.1"
                     /translation="MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFN
                     LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLRRQKIQ
                     IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH
                     MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFI
                     SHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRER
                     IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR
                     "
     gene            complement(4301..5284)
                     /gene="dppD"
                     /locus_tag="OQQ76_002802"
     CDS             complement(4301..5284)
                     /gene="dppD"
                     /locus_tag="OQQ76_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HCS1969238.1"
                     /translation="MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS
                     GKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSL
                     NPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA
                     EAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPG
                     KYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL"
     gene            complement(5295..6191)
                     /gene="dppC"
                     /locus_tag="OQQ76_002803"
     CDS             complement(5295..6191)
                     /gene="dppC"
                     /locus_tag="OQQ76_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="HCS1969239.1"
                     /translation="MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLF
                     IAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDMLSRLMYGARLSL
                     LVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVAIFGPSIG
                     NAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLI
                     VQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILL
                     TVLAFNLMGDGLRDALDPKLKQ"
     gene            complement(6201..7220)
                     /gene="dppB"
                     /locus_tag="OQQ76_002804"
     CDS             complement(6201..7220)
                     /gene="dppB"
                     /locus_tag="OQQ76_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="HCS1969240.1"
                     /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGARGI
                     SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLEL
                     GVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW
                     NLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLA
                     VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA
                     GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR
                     IRHKK"
     gene            complement(7528..9135)
                     /gene="dppA"
                     /locus_tag="OQQ76_002805"
                     /pseudo
     CDS             complement(7528..9135)
                     /gene="dppA"
                     /locus_tag="OQQ76_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418001.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter substrate-binding
                     protein DppA"
     gene            complement(9880..9956)
                     /locus_tag="OQQ76_002806"
     tRNA            complement(9880..9956)
                     /locus_tag="OQQ76_002806"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9920..9922),aa:Pro,seq:cgg)
     gene            complement(10048..11739)
                     /gene="eptB"
                     /locus_tag="OQQ76_002807"
     CDS             complement(10048..11739)
                     /gene="eptB"
                     /locus_tag="OQQ76_002807"
                     /EC_number="2.7.8.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418002.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid A phosphoethanolamine
                     7''-transferase"
                     /protein_id="HCS1969241.1"
                     /translation="MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWK
                     GVSAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYG
                     IIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRS
                     LAVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAW
                     ARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKL
                     AQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDL
                     YAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLI
                     ILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFISSVID
                     QVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMSDKYLENPANAQ
                     AFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIPQAKEAAAN"
     gene            complement(11992..12516)
                     /gene="lpfE"
                     /locus_tag="OQQ76_002808"
     CDS             complement(11992..12516)
                     /gene="lpfE"
                     /locus_tag="OQQ76_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000792957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbrial protein LpfE"
                     /protein_id="HCS1969242.1"
                     /translation="MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELV
                     KDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFA
                     LDAGGATGVGLKIKTAAGVQQFPENTTPTPVEFAINGDGAHQLNYIASYVPIRADATI
                     GRADATVDFTVQYE"
BASE COUNT         3008 a         3361 c         3179 g         3052 t
ORIGIN      
        1 atgattgggg ccatttttgt tttattagtg gcctggttat tcctgtcaca atggattcgc
       61 attaccgttt ttgtggttgc catactgcta tggctgaacg tacttaccct ggcgggacca
      121 agtttctcct tgtggccagc cggacaaccg acgaccactg taacaacgac gggtggtaac
      181 gcagcggcaa ccgttgcgac gacgggtggc gcaccggtag tgggtgatat gcccgcacaa
      241 actacaccgc caacaacggc gaaccttaac gcctggctga ataatttcta taacgcggag
      301 gcgaaacgta aatcgacctt cccgtcttcg ctgcccgctg atgctcagcc atttgaacta
      361 ctggtgatta acatctgttc gctttcctgg tcggatatag aagccgccgg gttgatgtcg
      421 catccactgt ggtcgcattt cgatattgag ttcaagaact ttaactccgc cacctcctac
      481 agtggcccgg cggcgatccg tttactgcgc gccagctgcg ggcagacttc gcacactaat
      541 ctgtatcaac cggcaaataa cgactgctat ctgtttgata acctttcgaa actgggcttt
      601 acccagcacc tgatgatggg acataacggc cagttcggcg gttttttgaa agaagttcgc
      661 gaaaatggcg gcatgcagac tgaattgatg gatcaaacaa atctgccggt tattttgctg
      721 ggctttgatg gttcgccggt ttatgacgat accgccgtgc ttaaccgctg gctggacgtt
      781 accgaaaaag ataaaaacag ccgtagtgcc acgttctaca acacgcttcc actgcatgac
      841 ggcaaccatt atccgggggt cagcaaaaca gcggattaca aagcgcgggc gcagaaattc
      901 tttgatgaac tggacgcctt ctttactgaa ctggagaaat cgggtcgtaa agtgatggtg
      961 gtcgtggtgc cggaacacgg cggcgcgctg aagggcgaca gaatgcaggt atctggccta
     1021 cgtgatatcc ctagcccgtc tatcacagac gtccccgttg gggtgaaatt cttcggcatg
     1081 aaggcaccac atcagggggc accgattgtc atcgaccaac cgagcagctt cctggctatc
     1141 tccgatctgg tggttcgcgt tcttgatggc aagattttca ccgaagacaa tgttgactgg
     1201 aaaaaactca ccagtgggtt gccacaaaca gcaccggtct ccgagaactc aaatgcagta
     1261 gttattcaat accaggataa accgtacgtt cgcctgaacg gcggcgactg ggtgccttac
     1321 ccgcagtaag cacgaaaaag gccgcagagt ttaacctctg cggcctgatc cgggcgcaaa
     1381 ttgccattac ggcagcctga cgcccgcatg acacgttact tccgcttatt cagccagttc
     1441 acgatcatac tggcaagaat gccagcaatg accggagccg ctaaatcatg ccagaaggcc
     1501 atgcccagtt ctgcgagcgt catatagccg cctgtgttgt aatgccaacg tttcgcggct
     1561 attcttgagt tgtttgggtt caagattagc ccccgtgatg ttgtcaggtg catacctgca
     1621 acgtgcgggg gttttctctc tccagcaacc aatgccacca gggataaagc ccccgcaaca
     1681 ttgcgcctca ccggaaccct ttcggcttgc cgctgatttt acgattgctt tttactgtca
     1741 gcacccggca atcttcctca ttgcgcgatg ccttccagct taatttcttt atttgcaata
     1801 gttgcagttc atatccgggc tgactccaga ctggtagtga aatgcgcaat tttgtagaat
     1861 tgcgcctcct cgcgacctcc ccagtgaatc tgttgcctca ttttttacat actgcgtatt
     1921 cgacttctcc acctgttgcg caagagaaac tgggtttatt catttttgcg aggccgactt
     1981 ctttctggac aggactttat gcagcacaac acactatcga aacacaatca gaaattgccg
     2041 tttacacgct acgacttcgg ctgggtttta ttatgcatag gcatggcgat tggtgccgga
     2101 accgtgctga tgccagtaca aattggcttg aagggaattt gggtatttat taccgcagcg
     2161 atcattgctt atcctgccac ctgggtagtg caggacattt atttaaaaac cctttctgaa
     2221 agcgattcct gtaatgacta caccgatatt atcagtcatt acctggggaa gaactgggga
     2281 attttcctcg gggttatcta ctttttgatg attatccacg ggatttttat ctactctctc
     2341 tccgtggttt tcgacagcgc ctcgtacctg aaaaccttcg gtttaaccga tgccgatctt
     2401 tcacaatctc tactttataa agtcgctatt ttcgccgtac tggtagcgat tgcgtctggt
     2461 ggtgaacgat tactgtttaa gatttccggg ccaatggtgg tggtcaaagt agggattatt
     2521 gtcgtgttcg gttttgcgat gatcccgcac tggaatttcg ccaatataac cgccttcccg
     2581 caagcctccg tctttttccg cgatgtcctg cttacaattc cattttgctt cttttctgcg
     2641 gtatttattc aggtacttaa cccaatgaat attgcctatc gtaaacggga agcagataaa
     2701 gtactggcaa cccggctcgc gctgcgtacc caccgaatta gttatatcac gctcatcgcg
     2761 gtgatcctgt tttttgcctt ttcgtttacc ttctcaatta gccacgaaga agccgtttct
     2821 gcctttgaac aaaatatctc ggcactggca ctggccgcgc aggtgatccc tggacatatc
     2881 attcatatca cctctacggt gctgaatatc tttgccgtac tgaccgcatt ctttggcatt
     2941 tatctcggtt tccacgaggc tattaaaggc attattctca atctgttaag ccgaattatt
     3001 gataccaaga aaattaactc acgcatgctg actctggcga tctgcgcttt tatcgtcatt
     3061 acgttgacga tttgggtttc gtttcgtgta tcggtgctgg tgttctttca gttgggaagc
     3121 ccgttatatg gcattgtgtc gtgcctcatt ccgtttttcc tgatctataa agtcgcacaa
     3181 ctggaaaaac ttcgcggatt taaagcctgg ctaattctgc tttacggcat tttgctatgc
     3241 ttgtcgccac tgttgaagct gattgagtaa accggagcgc atggccccgg ttttgtgagt
     3301 taacgctgcg gattttcatc ctgatcaaca gcaaaacaag ctaccagttg accgccgtag
     3361 tcttttagct gcggctgcaa ctgggtgcag gggccgaagc gccgacgaca gcgggcgttg
     3421 aaggcgcaac ccggcggtgg attcagtggg cttggtagtt caccgctgag cttgatgcgc
     3481 tcgcggcgat cgtccgggtt caggcgcggc gtcgcggaaa gtagcgcctg agtgtacgga
     3541 tggcgcgggt tattgaagat ttggtctttc gttcccttct ccacgcagcg gcccaggtac
     3601 atcaccatca cttcatcagc aatgtgctcc accaccgaca ggtcgtggga gataaagaca
     3661 taagacagcc ccaactcctg ctgcaaatcc atcatcagat tcagcacctg cgcgcgcact
     3721 gaaacatcca gcgcggaaac cggttcatcg gcaatcacca catccgggtc gagcatcaga
     3781 ccacgggcga tggcgatacg ctgacgctga ccgccggaga acatatgcgg atagcggtca
     3841 tagtgctcgg ttttcaggcc gactttcgcc atcatcgaca gggctttttc ccgacgctgt
     3901 tctttgctta agctggtgtt gatcagcagc ggctcttcaa gaatttgccc gactttttta
     3961 cgcggattca gcgaaccgta agggttctgg aagacgatct ggattttctg ccgacgcagc
     4021 ttctgcgcct gcggatcgtg cttaagcaga tcctgcccct ggtaatacag ctcgccaccg
     4081 gtgggcgttt caatcatcgt cagcaaccga ccgagggtcg atttaccgca gccagattcg
     4141 cccactactg ccagcgtttt gccacgttca aggttaaacg aaacgccatc cagcgcttta
     4201 accagacgtt ccggcgcgaa catgcctttc ttcaccggat aatgtttttt caggtcgata
     4261 gcctgcaaca gcggttgttg cagggtggcc tcttgcgtac tcatagtgtc ggcctcccgg
     4321 catcatcaag tgggtaatgg catttggact gacgcccgtc agcgagcata ttcagcgccg
     4381 gttcttcagc gcgacatctg tcagtggcat aggggcagcg cgggttaagc aggcagccgt
     4441 tcgggcggtc gtacttgccg ggaacgacac ctggcaacga cgccagacgt tctttgtcct
     4501 gagcaaattc tggcagcgca cgcagcaatg cctgagtata cgggtgacgc ggcgcatgga
     4561 agatggcgtg cgcatcgccc gtttccacca cctggcctgc atacatcaca atgattttat
     4621 gcgcagcttc cgccaccagc gccaggtcat gggtaatcaa caccagcgcc atgttctctt
     4681 tctgctgtag ctccagcagt agttcgatga tttgcgcctg aatggtcacg tccagcgcgg
     4741 tggtcggctc atcggcaatc agcagttttg gtcgacaggc aatcgccatg gcgatcatca
     4801 cgcgctggct catgccgccg gaaagctgat gcgggtaaac atccagacgc gaagccggat
     4861 cgggaatacc gacctgattc agcaggtcaa tcgcccgctg acggcgggta cttttgttgc
     4921 cgccctgatg caccttaatc gcttccatga tctggaaacc cacggtgtag cacgggttaa
     4981 ggctggtcat cgggtcctgg aagatcatcg ccacttcggc acccaccagg ttgcggcgct
     5041 ctttttctga tatacgctgc aaatcctgac cgttaaacac cagtttttcc gccattacgc
     5101 ggcccggata atcaatcagc cccataatcg ccagggaact gaccgactta ccggagccgg
     5161 actcacccac aatcccaacc acttcgccct gttttacgct gtagctgatg cggtctacgg
     5221 cgcggaacgg tgcgctttcg tcgccgaaat gcaccgataa tttatctaca tttaataacg
     5281 ccatctcgaa cctcttactg cttcagtttg ggatcgagcg cgtcacgcag accgtcaccc
     5341 atcaggttaa atgccagcac cgtcagcagg atcgccagac ccgggaaggt cacgacccac
     5401 caggcgcttt gcgcgaactg caacacgtcg gagagcatgg tgccccactc cggcgttggc
     5461 ggctgtgccc ccatgccgag gaaaccaaga gcagccatat cgagaatggc gttagagaaa
     5521 ccgagcgacg cctgaacaat cagcggcgca aggcagttcg ggaagatgtt aataaacatc
     5581 tgacgcatcg ccccggcacc cgccacgcga gacgcggtga cgtaatcgcg gttaacttcc
     5641 accagcacgg cggcgcgggt taagcgcaca tagtgcggca aggcaacgaa ggtcagtgcc
     5701 agcgcggcgt taccaatcga cgggccgaaa attgccacca gcgccagcag cagacttggc
     5761 agcgccagca tgatatcgac cacgcgcata atgatgttat cgaccaggcc gccaaagtaa
     5821 ccggcgatca ggccgagaat aacgcccata atcagcgata acacaactac cagacagcca
     5881 accagcagcg acaggcgcgc accgtacatc aggcgcgaca gcatatcacg gcctacgtca
     5941 tcggtgccca gcaagtgcgc catgctgccg ccttcctgcc aggctggcgg ggcgagcagt
     6001 gcatcgcgga actgttccgc cgggttatag ggtgcaatcc agttggcaaa gatcgcgatg
     6061 aacagcacga tgacgacgta aaccagcccg acgaccgcgc ctttgttgcg tttaaaatag
     6121 tgccagaact cctgtaacgg ggtcatcggc accggtgcgc taatcacttt attttcagta
     6181 acctgtgaca tgatgtcccc ttacttctta tgacgaatac gcgggttcac cacgccgtac
     6241 agcagatcga ccagcaagtt gacgaggata atcatcgtcg ccaccagcaa tacgccgccc
     6301 tgcactaccg gatagtcgcg gcgttgcagt gcgtcaatca accagcgtcc cagaccgggc
     6361 cacgagaaga tggtttcggt cagaatcgcc cccgccagca atgttcccac ctgcaggccg
     6421 ataacggtca ccaccggcag catcgcgtta cgcagcgcat ggacgataat cacccgcatg
     6481 cgggttagcc ctttggcgcg cgcggtgcgg atgtaatcct cgcccagcac ttccagcatc
     6541 gaggagcgtg tcatacgcac aatgaccgcc agcggaatag tacccagcac aatggcaggt
     6601 aagatcatat gggcgacggc atcgataaag ttgccgtctt caccccagat ggcggtgtcg
     6661 attagcataa aaccggttaa cggattggag tcatcgagga acaccatatc gctcacgcga
     6721 ccggagacgg gcgtcaggtt ccagtgcacc gaaaccagca tgatcagcat catgccccac
     6781 cagaagatcg gcatcgagta gccggtcagc gccaggccaa ctgcagtgtg atcgaaaatg
     6841 gaaccgcgtt taaccgcagc cagcacacca accggaatac cgactgccgt agcaaaaatc
     6901 atcgcgcaga cgccaagttc cagcgtggcc tgaaagcgcg gcacgaactc ttcccatact
     6961 ggaattcggc ttttcattga aatgcctaga tcgccgtgca ttacgcccca aatgtaatgg
     7021 agatactgct gccacatcgg tttatctaag ccgagttcag ccagcagctg cgcgtgacgc
     7081 tcaggggaga tcccacgtgc gcctgccatg atcatcaccg gatcgcccgg gatcatgtgg
     7141 acaaaggcaa atgtgagaag ggtaataccg ataaacgtgg ggatgacgag tcccaaacgt
     7201 cggagaataa actgcaacat aacccggatt ctctatagtg acccgcagcc tggaactgcg
     7261 tgtctgtatt gctcacaaat caattcccgc ccttgtcgga cagagaatga agtattgctg
     7321 ccggatggcg ctgcacgcag aggcacagcg ccaccgggta tacagattgt tgacaaagtg
     7381 cgctttgttt atgccggatg cggcgttaac gccttatccg gcctacaaaa tcgtgcaaat
     7441 tcaatacatt gcagaatttt cgtaggcctg ataagcggag cacatcaggc agttttgcct
     7501 ttaccatcag tcttgtatgg cttttaatta ttcgatagag acattttcga agtgatgttt
     7561 gcctaatgga tcaaccacat agcctttgac ttctttgcgt accggttcaa acacggtgga
     7621 gtgagcgatg atcagtgccg gagcctgatc gtgcatcacc acctgcgctt gcttgtacag
     7681 ttcaacgcgt ttgttatggt cgtcggtagc acgcgccggt tgaatcagat cttcaaacgg
     7741 tttgtagcac cattttgagt agttagaacc ttgttcagag gcggcgcagc tgaacagggt
     7801 ggcgaagaag ttatccgggt ccccgttatc gccagtccag cccatcatta ccgtctgatg
     7861 ttcgccatct ttcgcacgct tgaggtactc accccattcg taggtgacga ttttggcctg
     7921 cacgcccact ttcgcccagt ctgcctgaat catctccgcc atgcggcgag cgttcgggtt
     7981 atacggacgt tgttccggca tcgcccacag gtcgatggag aaaccttttt ccagacccgc
     8041 ttctttcagc aaggctttcg ctttttcagg atcgtaggtg taatcctgaa cgtcgtcgtt
     8101 atagccccac atggttggcg ggatcaggtt tttcgctgat acacccgcgc cctgataaac
     8161 cgctttgatg atcgcgtctt tgttcaccgc gtaggtcagt gcctggcgaa ctttcacgtc
     8221 atccagcggt tttttctgca cgttatacga gaggtagccg acgttcagcc ccggcatttc
     8281 catcaggttg atggatttat cctgcttcat gcgagcgata tctgccgggt tcgggtacgg
     8341 catcacctgg cattcattct tctgcaattt cgcgtaacgc acggaagcat caggggtaat
     8401 agagaagacc agcgtatcga tctgcggttt ggtgccccag tagccatcaa acgctttgta
     8461 gcggatacgg gaatcttttt ggtactgctg taactggaac ggaccggttc cgattgggtt
     8521 gaggtccagt ttttccggtg taccggcttt catcatcgca tcagcatatt cttttgacag
     8581 aatagaggcg aagtccattg ccagatcagc gaggaacggc gcttccgggc gagtcagtac
     8641 gaactgaact gtgttgtcgt ccaccttttt cacttcactg atcagctccg gcaagcccat
     8701 gccttcgaag tattcgtagc tgccgccaga tactttatgg tacgggtttt gcgcgttttt
     8761 ctgacggtcg aacgagaaca ccacgtcatc ggcgttcagt tcacgcgtcg gtttgaattc
     8821 tttattgtcg tgccacttca cacctttacg cagatggaag gtatagattt taccgtctta
     8881 gctgacttcc cacttttcag cgaggcccgg tatcacttca gtggtgccga ttttaaattc
     8941 aaccaggcgg ttataaagcg gtacggaaga ggcgtcatag gtggtgccgg aggtaaacag
     9001 ctgcgggtta aacccttccg gagatccttc tgagcaataa accagagttt tagcctgaac
     9061 acttgctgcg acggtcatag ccaccaggct gagaccaagc ttcagcatcc ctgacttttt
     9121 caaggaaata cgcattattc tgctccaatt gtgatgtttg ttgttttaac cctttgcagt
     9181 gggttgtcgc tgcctgacct tttttgtttt ttgcccggtc gggtcaacgt tatgaggtgg
     9241 ggatgccgta ctaattaaca tcagtgtaac agtgcggatc ctccataaaa tgcccctcgt
     9301 gacctacaat ctgtcaacag aatgtgaaaa cgtcaataca gccaaccggg atttacacca
     9361 acggtgagaa tccacaaaca aagattaaaa aaacttcaaa cagctatttg cagcagagaa
     9421 atttgtgcta ctccaacata accagaacaa tcagcttaat atttagcaac atttggtgat
     9481 taagttttat gaatttaatg aaaaaaatct gaggaaaagg tggatatctg agcgattaat
     9541 accatgaacg ctaaaacgca cagcggaaaa tgccagcgcc agccataagt aacgcaaaaa
     9601 aagatttaag caaatataaa aaaagacaat ggtttctgtc acaaatccgt taatggatag
     9661 tgagatatgg ggcgcaaagt tggcaggaaa atgtgtggtg tgttggtcga ataaggcggt
     9721 cgcgccgcat ccgacaataa gtgcggtgcc gttgcctgat gcgacgctgg cgcgtcttat
     9781 caggcctacg tcgagtcgaa cctcccagcc cccggaggtt ctcatcctca tgggcttcaa
     9841 atgcaaaaaa gcctgctcgc tgagcaggct tttcgaattt ggtcggtgat agaggattcg
     9901 aacctccgac cccttcgtcc cgaacgaagt gcgctaccaa gctgcgccaa tcaccgaatg
     9961 cggggcgcat cttactgcgc agatacgccc tcgtcaatcc cttaatagca aaatgccttt
    10021 tgatcggcga gaaagtcagc aggccgctta gttagccgct gcctcttttg cctgcgggat
    10081 gtgacaccag ttgttgtttt cgttaattcc accatccggt gaagtatagc caagacaacc
    10141 catgatggta tcgtacagct ctacgtgacg gcgtggcact ttcatgtcgg cttctttttt
    10201 cagctgcgca aatgcctgcg cattggccgg attttccaga tatttatctg acatccagac
    10261 catcatcggt acgcggaact gctccggcgg tgccaattca cgcggcgtgc cgtgcaggtg
    10321 ctcgcgttca ttaattgact caccgtggtc agctgcgtag aacacaatcg ctttcttatc
    10381 gcgaacctga tcaatcacgc tggagataaa gtgatccaca taggtcaccg agttgtcata
    10441 ggagttgatc atctgcgctt tggtacagcc gctatcaaca ccaatacatt ccggcttcca
    10501 ctgcgcgaag ctacgcggat aacgctgggt gtagttaaaa tgcgaacctt tggtatgcag
    10561 aatgatcaga tgcttaccat ccgggttgcg ccctagcgat tgctgcattt cgtctaccag
    10621 caacatatca tctaccggct tgccacgatt acgtggctcc gcaccaatct gctcacgata
    10681 agcaatgttg tccgccatcg tgttgctgta gaaccacatt tcgctctgca tagcgtagag
    10741 gtcagaactg aatcctaact gcttcagaac cgcgaaaatg ttctgttctt ttaatgtgcg
    10801 ctgcggatta tcttccgcgc ccccctgacg tacaaacatg caacgcagtg agagtttggt
    10861 tgcggtatca caggagtaac cacggaacgc cgccagattt ttctcctggg ccagtttcgg
    10921 cgtggtatta cgctcatagc cgaaaatacc catatggtcc caacgcgtgg tttcaccgat
    10981 gataaacacg acataagtat catcaacgtt ttgtggagcc tggtatgtaa acttcttcgc
    11041 cggattaagc aatgaattat tatcggaaga ttcatcgacc cgcgcccagg catacagccc
    11101 caacgcagaa agccagtttg atggcagata agagttcgct acgacaccgc cataactcgg
    11161 caaatcaacg ccggtcgccc tctccacttt cttctgctgg atatccagca aacgaatcgg
    11221 tgcccaaacc ataatacccg ccagtacgac gaccgccagg ctgcgaatac gctgccctgg
    11281 ggttcgcagt tgtcggagca aggtgtagcg acagcggtta ttccagataa ggataagagg
    11341 caatgcacta acggcgatta accagagaat aaagttcaga ccaacaactt cttttgacag
    11401 gtcgatatcg gtggtcatga cggaagcgat gatgccataa ccaatgacca cattaaggaa
    11461 ggtcatgtaa tagctggcac ctgcggaaaa gagcaccacc agcgacgcca gaatacgcca
    11521 gctgcggcgg ccaaacagcg atagaagacg tagtaagaag aaggtcacca gtacggtggc
    11581 ggccagttca acaacagcag aaacgccttt ccagacggta aaatcgtgcg catagctgcc
    11641 gaagcggcga taaaaaaccg cgccattcat aaaaaggcca atatagattg caagcaaaaa
    11701 gctcagcttc tgctgtgtaa tcgatttgat gtatctcatg caaacaaacc ctggacaaac
    11761 aggtgataac accctgcttc gcggcttttc aggcccggca ggggaaaagt gcggaggtag
    11821 tcagataagt aaaatctaca cgcgcgaata agtagaccac agcaaagcga aaaagtgtgg
    11881 ggaaagagtg tgcatgaagc acaaatttac aaaaatgcaa gtttgaaaag agactttagc
    11941 gttacaaaaa gcagtaaaaa gggccagtta actggccctt aagatgtgaa attattcgta
    12001 ctgtacagta aagtcgaccg ttgcatctgc gcgaccaata gttgcatcgg cgcgaatagg
    12061 cacgtagctg gcgatatagt tcagttgatg tgcgccatca ccgttaattg caaactcaac
    12121 cggtgtcggc gttgtatttt ccgggaactg ttgtactcca gcagcggttt tgattttcag
    12181 cccaacgcct gtagcgccac ccgcatccag cgcaaaaaga tttgagtcgt ctgcattggg
    12241 tgtaccgtcc atagtcacgt aggctctgac cacttcgcta cagtttttca ggccgatgga
    12301 aaaaggagtg ggattaattt ccgttccgat tcttaccggc tttttgagaa ccgcggtgcc
    12361 catgtcaacc tcaacgctgt ctttcaccag ttcgcaagca ccctggctga ttttaagggt
    12421 gaatttcaat gttcctttcg gccctaaatc cgtggttgcc gcgaatgacg aaaaggaaag
    12481 aggcagcagg cataacgcaa gtattgttcg cttcatgact gttactccag ttcgacatgt
    12541 atggtagcaa taccgctata atccccggca gcgggtaatt ttccggtagt gctaacggga
//
LOCUS       DAJVUN010000119        12547 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.119, whole genome shotgun sequence.
ACCESSION   DAJVUN010000119 DAJVUN010000000
VERSION     DAJVUN010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12547
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.119"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(81..632)
                     /locus_tag="OQQ76_002809"
     CDS             complement(81..632)
                     /locus_tag="OQQ76_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HCS1969243.1"
                     /translation="MAINGLFVRTDPQRRRYGVALLVGVLSGIISAFVKWGAEVPLPP
                     RTFSGGRDEFNPPYIFLRDYLGIDPTQTVYTFSEHIINPVMVTHIIFSLVFAIGYCIV
                     AEIFPKVKLWQGILAGLIVTVAVHGIFCPVLNLTPPLTQLPFDEYASEILGHIFWFWI
                     IEIMRRDLRNRITHEPDPEVAIR"
     gene            complement(729..1415)
                     /gene="ulaF"
                     /locus_tag="OQQ76_002810"
     CDS             complement(729..1415)
                     /gene="ulaF"
                     /locus_tag="OQQ76_002810"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase UlaF"
                     /protein_id="HCS1969244.1"
                     /translation="MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG
                     VAYETMKADDMVVVDMSGKVVEGKYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAW
                     APAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGKVIIETLGDAEPLHTP
                     GIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRK
                     HGPNAYYGQK"
     gene            complement(1415..2269)
                     /gene="ulaE"
                     /locus_tag="OQQ76_002811"
     CDS             complement(1415..2269)
                     /gene="ulaE"
                     /locus_tag="OQQ76_002811"
                     /EC_number="5.1.3.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase UlaE"
                     /protein_id="HCS1969245.1"
                     /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD
                     ERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA
                     IQFAQDVGIRVIQLAGYDVYYQEANNETRRHFRDGLKESVEMASRAQVTLAMEIMDYP
                     LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG
                     VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAEDPAAEVVKARDWVKARMA
                     KAGMVEAA"
     gene            complement(2279..2929)
                     /gene="ulaD"
                     /locus_tag="OQQ76_002812"
     CDS             complement(2279..2929)
                     /gene="ulaD"
                     /locus_tag="OQQ76_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HCS1969246.1"
                     /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV
                     RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADTNTAKGALDVA
                     KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLS
                     DMGFKVTVTGGLVLEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG"
     gene            complement(2943..3407)
                     /gene="ulaC"
                     /locus_tag="OQQ76_002813"
     CDS             complement(2943..3407)
                     /gene="ulaC"
                     /locus_tag="OQQ76_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIA"
                     /protein_id="HCS1969247.1"
                     /translation="MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYY
                     QTILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDIL
                     ITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA"
     gene            complement(3417..3722)
                     /gene="ulaB"
                     /locus_tag="OQQ76_002814"
     CDS             complement(3417..3722)
                     /gene="ulaB"
                     /locus_tag="OQQ76_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIB"
                     /protein_id="HCS1969248.1"
                     /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY
                     KSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK"
     gene            complement(3738..5186)
                     /gene="ulaA"
                     /locus_tag="OQQ76_002815"
     CDS             complement(3738..5186)
                     /gene="ulaA"
                     /locus_tag="OQQ76_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008786013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HCS1969249.1"
                     /translation="MSAQHSGCAEYPVTSSSGDRLYNIFTVFFNQVMTNAPLLLGIVT
                     CLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISD
                     TYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGL
                     IAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASW
                     IAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAM
                     AGKVNWTVYILQTGFSFAVAIFIIIQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAA
                     IYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFG
                     GWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAFMA
                     VIIVIALAYMFFAGRALRAEEDAEKQLAEQSA"
     gene            5490..6554
                     /gene="ulaG"
                     /locus_tag="OQQ76_002816"
     CDS             5490..6554
                     /gene="ulaG"
                     /locus_tag="OQQ76_002816"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HCS1969250.1"
                     /translation="MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG
                     CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVL
                     DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKER
                     CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPG
                     GSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKV
                     VIPFHHDIWSNFQAAPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNLEYHY
                     PRGFDDCFTIEPDLPFKSFL"
     gene            6662..7417
                     /gene="ulaR"
                     /locus_tag="OQQ76_002817"
     CDS             6662..7417
                     /gene="ulaR"
                     /locus_tag="OQQ76_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HCS1969251.1"
                     /translation="MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLD
                     ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG
                     STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
                     SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLF
                     SRADQIDMLITGKNANPEILQQLEAQGVSILRV"
     gene            complement(7414..8163)
                     /gene="yjfP"
                     /locus_tag="OQQ76_002818"
     CDS             complement(7414..8163)
                     /gene="yjfP"
                     /locus_tag="OQQ76_002818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCS1969252.1"
                     /translation="MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYS
                     YFAVVLAQAGLRVIMPDAPDHGSRFSSDEARRLNQFWQILLQSMQEFTTLRAAIAEEN
                     WLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAA
                     QQNEFNNIIAPLAEWEATNHLEQLGDRPLLLWHGLEDDVVPADESLRLQQALSETGRD
                     KLLTCSWQPGVRHRITPEALDAAVTFFRQHL"
     gene            8345..8674
                     /gene="bsmA"
                     /locus_tag="OQQ76_002819"
     CDS             8345..8674
                     /gene="bsmA"
                     /locus_tag="OQQ76_002819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313192.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm peroxide resistance protein BsmA"
                     /protein_id="HCS1969253.1"
                     /translation="MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTNHPQE
                     IRRDQTQGLQRIGSVSTMVRGSPDDALAEIRAKAVAAKADYYVVVMVDETIVTGQWYS
                     QAILYRK"
     gene            8823..9098
                     /gene="yjfN"
                     /locus_tag="OQQ76_002820"
     CDS             8823..9098
                     /gene="yjfN"
                     /locus_tag="OQQ76_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease activator YjfN"
                     /protein_id="HCS1969254.1"
                     /translation="MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVS
                     NISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA"
     gene            complement(9215..10840)
                     /locus_tag="OQQ76_002821"
     CDS             complement(9215..10840)
                     /locus_tag="OQQ76_002821"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418608.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HCS1969255.1"
                     /translation="MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLA
                     SIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHN
                     LAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPTPFQDWTTPL
                     LSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS
                     VPQSDAHLVLAQTTGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA
                     IGWLLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ
                     PLMCHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPF
                     VAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLS
                     EAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQ
                     AWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV"
     gene            complement(10924..11982)
                     /locus_tag="OQQ76_002822"
     CDS             complement(10924..11982)
                     /locus_tag="OQQ76_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HCS1969256.1"
                     /translation="MLRHNVPVRRGLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQ
                     IEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRM
                     DFAWCGNAPVKLLEYNAIQERLISRFSELYSREPFYFCCCQDTDENRSTVLYLQDCAQ
                     QAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQW
                     VEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKPQIAAGESYVRKPIYSREGGN
                     VTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIRED
                     NTLITKDTSRFVPHYIAG"
     gene            complement(11985..>12547)
                     /locus_tag="OQQ76_002823"
     CDS             complement(11985..>12547)
                     /locus_tag="OQQ76_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1190 domain-containing protein"
                     /protein_id="HCS1969257.1"
                     /translation="PFEPRRNRYAQKYLTLALMGGAAFFVLKGCGDSGDVDNDGDGTF
                     YSTVQDCIDDGNNADICARGWNNAKAAFYADVPKNMTQQNCQSKYENCYYDNVEQSWI
                     PVVSGFLLSRVIRKDRDEPFVYNSGGSSFASRPVWRNTSGDYSWRSGSGKKESYSSGG
                     FTTKKASTVSRGGYGRSSSARGHWGG"
BASE COUNT         3164 a         3449 c         3077 g         2857 t
ORIGIN      
        1 cgctagcacc aggtataacc aacgaaacat tgccatagtt tgctttgccc ccttcgcagg
       61 gggctttttt atacggttat tcaccggatt gcgacttccg gatctggctc atgagtaatg
      121 cgattacgta agtcgcggcg cataatttct attatccaga accagaaaat atgccccagg
      181 atttcagagg catattcgtc aaaaggcaat tgagtgagcg gcggcgttaa attcagcacc
      241 gggcaaaata taccgtggac tgccactgtc acaataagcc ctgctaatat cccctgccat
      301 aatttcactt tcgggaaaat ttccgcgaca atacaatacc ctatcgcaaa aaccagtgag
      361 aagatgatat gcgtcaccat caccgggttg ataatatgtt ccgagaatgt atacacagtt
      421 tgggttgggt cgatacctaa ataatcccgt agaaagatat acggcgggtt aaattcatcg
      481 cgaccaccgg aaaatgtgcg cggtggcaag gggacttccg ctccccattt aacaaatgct
      541 gaaataattc ctgaaagtac acccacaagt aacgcaacgc catagcggcg acgttgcgga
      601 tccgttctga caaacaatcc attgatagcc ataaaaacac ctgttgttta tacgattttt
      661 taactgaagc ggccccggaa tcagaccaat tacatcccgc aggaggtaat aattccgggg
      721 cgcactgctt acttctgccc gtaataggcg ttaggaccgt gcttacgcat gaagtgttta
      781 ttcatgagga agctgtcgat gtgattcagt tgtgggttaa tactgcgcgc aatccacgcc
      841 attttcgcca cttcttccat caccaccgcg ttatgcaccg cgtcgtgggc atctttcccc
      901 caggcgaacg gcccgtgctg atacaccaca attcccggcg tatgcagcgg ctcggcgtca
      961 cccagcgttt cgataatcac tttgccggtg ttcagttcat actcgccctg cacctcttct
     1021 tcgcttaatc cacgcgtaca cgggatgtcg ccaaagaagt agtcggcgtg cgtggtgcct
     1081 aacgccggga tcgccagccc cgccggcgcc catgcggtgg catgagtgga atgggtatgg
     1141 acaatgccgc cgagcgacgg gtaacgacgg tagagttcaa gatgcgtcgc ggtgtcagaa
     1201 gacgggcgat acttcccttc taccaccttg ccgctcatat cgaccaccac catatcgtct
     1261 gctttcatgg tttcgtaggc aacgccgctg ggcttgatca ccaccagccc gcgttcgcgg
     1321 tcgatagcgc tgacgttgcc ccaggtaaag gtcaccagcc catagcgcgg cagatccatg
     1381 ttggcttcaa acacctgctg ttttagcttt tgcattatgc cgcctccacc atgcctgctt
     1441 tggccatgcg cgctttcacc caatcacgcg ctttcaccac ttctgccgcc gggtcttccg
     1501 ccgtttcgct ccacatctca atcaggtacg gcccgcaata gccactctgt ttgagcgttt
     1561 cgaagcaacg ttcgaaatcc accacacctt cgccaaatgg cacgtttttg aagacgcccg
     1621 gtttggtgtc tttcacatgc accgcgacga tatgcccgat tccggcctgc aactccatct
     1681 gcacatcgtt gtcccacgcc gacaggttgc cgatatctgg gtagagctgg aaccacgggt
     1741 tgttgagata gtgcgcgtaa cccagcgcct tgctgatgga gttcatcaac ggataatcca
     1801 tgatctccat cgccagcgtc acctgcgcgc ggctcgccat ctcaacgctc tctttcaggc
     1861 cgtcacggaa atgacgacgc gtttcgttat tggcttcctg atagtaaacg tcatagcccg
     1921 ccagctggat cacgcgaatg ccaacgtcct gggcgaactg gatggcttta cgcataatct
     1981 ccagcccctg cgcccgcacc gcgtcatctt cgctgcccaa cgggaaacga cgatgggcag
     2041 aaaggcacat ggacggcaca cgcacgccgg tttcaacaat cgcattcacc agcgccagac
     2101 gctgctcgcg gctccagtcg aggcgcgaca ggcgctcgtc agtttcatct accgacatct
     2161 cgacaaaatc gaagcccaac gtttttgcca gtcgcaggcg ttccagccag cactccccgg
     2221 cggggagcgc tttttcatag atgccaagcg ggatttgttt ggacaacata tccgctcctt
     2281 agccccacag ttcggcgatg gaacgtttga actgacgcgc ggcttcaacc ggagaagcgg
     2341 catcacggat gctgcgaccg gcgataaaca catgaattgg aatgcctttg aacagcggca
     2401 gatcttccag caccaggcca ccggtgacgg tgactttgaa gcccatatcg gaaagacgtt
     2461 tgatcgcagt gatatcggct tcaccccacg ccacgccagc ggcctgcgcg tcacggctgc
     2521 ggtgataaac cacctgctga atacctgcgt cgcgccactg ttgcgcctgt tcccaggtcc
     2581 agtaaccggt cagttcgatc tgcacgtcgc cgttaaactc ttttgctacg tccagcgcac
     2641 ctttggcggt gttggtatcc gcacaacaaa tcacggtcac ccagtcagcg ttggcttcga
     2701 agcacatacg agaaagaatt ttgcccgcat cggcaatttt ggcgtctgcc agcacgattt
     2761 tgtgcgggta gagcgctttc agatcgcgaa ccgcacgcac gccttcgccc acgcacagaa
     2821 tggtacccac ttcgataatg tcgacttctt cggcaatcag gcgagtggtt tcgtaggcgc
     2881 tatccatagt ctggttgtcc agcgcgactt gcaacatcgg taatgacatc ttcaattcct
     2941 tcttaagctg ccgcgttggt gcggtcaatg agatccagta cttcctgctc ggtacggcag
     3001 gcacgtaaac ggtcgaaatt ttcttcatct tcaaacaggt tgacgatctg catgatgccc
     3061 acttcctggt gcgtgttggc atcgaccgcc gccatggtga tgaggatatc caccgggtcg
     3121 ttatcttcgt ggttgaactc cagcggcttt ttcagcgtca ccagcgcaaa accggttttc
     3181 ttaacgccct cttccgggcg accgtgcggc attgccaggc ctggtgcgag cacaaagtac
     3241 ggaccgtgct gttcaaccgc atccagaatc gtctggtagt aacgcggctc gacaacatcc
     3301 gccgccacca gcaggtcaac gccgattttt actgcgtcct gccatgtctc agcttcagcc
     3361 tgcaggcgga tggatttatt ctccgccagc gaatcacgta atttcatggc gcgtccttac
     3421 ttcacatcct gcgggaaatg cgctttgatc acttccagca gtttcgggcc aaagtcggca
     3481 ggagagagca tgttgcgcac gccaaccacg tatttgttgc cggtcacggt gatttcgccc
     3541 gcaatgtgcg tagaagcgat gatgatatcc gcgccgctca actcgctttt gtattcgcca
     3601 accgcgcagc tatttaccgt gtggtcaatg tttgattggg ttaaaaactg gtccactttc
     3661 atcttcatga tcatggaact gccttgtccg ttgccacaca cagccagaat acgtacggtc
     3721 ataatcaaaa ctccttatta agcagactgt tctgccagtt gtttttctgc atcttcttct
     3781 gcgcgcagtg cgcggccagc gaagaacata taagccagtg caattacaat gatgacggcc
     3841 ataaaggcga taccgatgga gaagaagccc tgcatcatcg gcggtgccag aatcgaccag
     3901 tccgccatgc ccatccaggc gctcataccg gtgagtttca ccgcccagac gcagccaaag
     3961 atttcaatca tccccatcac cagacatatc ttcagcgccg cacgccagcc gccgaagtgg
     4021 ttagcgaaca cgccgatggt ggcgttggag aagaacatcg ggataaagcc gggaataatc
     4081 aggatcgagg aaccgcaggc gaccaggatg ccaaccgcaa tcagctgacc gatggtgccc
     4141 cacataaagc cccaaaccac ggcgttcggc gcgaagctat agatagccgc acagtcaatc
     4201 gccagaaccg caccagggat caggcgctgg gagataccgt taaatgcttc agagagttcc
     4261 gccacaaaca tgcgcacgcc ctgaatgatg atgaagatcg ccaccgcgaa ggagaaacca
     4321 gtttgcagga tgtacaccgt ccagttcact ttgcctgcca tcgcctgcac ggtgtcgata
     4381 ccgaaggaga gcagaatggc accaaagaag atggtcatca caatcgccgt ggagacgatg
     4441 ttgtcgtgga aaatattcag ccagcctggc agtttgaggt cttcaacgct ttcctctttt
     4501 ttgccgagga acggcgcaac tttataggca atccatgatg caaactgttg ctggtgaccg
     4561 atggagaaac cgcagccgtc cgtcacttcc tgagtcggct tgtacatcat gttggaggta
     4621 atgccccagt agagcgaaac cagaatcgcc gtgcagataa tggttgtcca catggagtag
     4681 ccgaaaataa acaacgtaac ggcaatcagc cccgcctgct ggaacatgat atgaccagtc
     4741 agcatgatgg tacgaatacc ggtaatgcga cgcagcagca cgtaacagat gttcagcgcc
     4801 agcgctaaca acaccgcgta acctacccag ctataggcat cgcccatgcg gtcgatggtt
     4861 gccatcatcg acgcgtaagt atcggaaatt gcgccgttaa tgccgtagac ttcggacatt
     4921 ttcgccacca ccggtttgaa ggtgctggtg aggatgccgg accctgcctg caacaacatg
     4981 aaaccaatta tggttttaat cgtgccttta ataataacgc tgacactttt gcgcagtagg
     5041 atgtagccca gacaggtcac aatacccagc aacaacgggg cattggtcat gacctggtta
     5101 aaaaacacgg taaagatgtt gtagagacga tctcctgaag aagaggtaac cgggtattcc
     5161 gcacacccgg aatgttgtgc actcactcta attttcaaaa gtaatcacaa caagattatt
     5221 tatgattaaa tgtggcgcga cccgtaaata attccatacg gatagagtgg gattcacaca
     5281 acgaaacaat tatttattta aatttattta aattcattta gttaatttaa ctacacattc
     5341 cattaaatct ttccacactc aaaatcaaca acaacttccc tggcaaaaag tcaaaaaatg
     5401 gtcattgcct tcctgaaaaa atagtgtcat gattaatcaa aaccaatcac atattgattc
     5461 gaattgaact atcatgaagg taaatggcga tgagtaaagt gaaaagtatc acccgagaat
     5521 cctggatcct gagcactttc ccggagtggg gtagctggct gaatgaagaa attgaacaag
     5581 agcaggtcgc ccctggcaca tttgcgatgt ggtggctagg ctgcaccggg atctggttga
     5641 aatcagaagg tggcaccaac gtttgcgttg atttctggtg cggcactggc aaacaaagtc
     5701 acggtaaccc gttaatgaaa cagggtcacc agatgcagcg catggctggc gtgaaaaaac
     5761 tgcagccaaa cctacgcacc accccgtttg ttcttgatcc gtttgcgatt cgccagatcg
     5821 acgcggtact ggcgactcac gatcacaacg atcatatcga cgttaacgtc gctgctgccg
     5881 tgatgcagaa ctgtgctgat gacgtaccat tcattggacc gaaaacctgc gttgatttgt
     5941 ggattggctg gggcgtaccg aaagagcgtt gcatcgtggt caaaccgggc gatgtggtga
     6001 aagtgaaaga cattgaaatt catgcgcttg atgctttcga ccgtactgca ctgatcaccc
     6061 tgcctgccga tcaaaaagcg gctggcgtac tgccggacgg catggacgat cgcgcggtga
     6121 actatctgtt caaaacgcct ggcggctccc tgtatcacag cggcgactcc cactactcta
     6181 actattatgc gaagcacggt aacgaacatc agatcgacgt ggctttaggt tcatacggcg
     6241 aaaacccgcg cggtatcacc gacaaaatga ccagcgccga tatgctgcgt atgggtgaag
     6301 ccctgaatgc gaaagtggtt atcccgttcc accacgatat ctggtcaaac ttccaggccg
     6361 ctccgcaaga gatccgcgtg ctgtgggaga tgaaaaaaga tcgtctgaag tatggcttca
     6421 agccgtttat ctggcaggtt ggcggcaaat ttacctggcc actggataaa gacaacctcg
     6481 agtaccacta tccgcgcggt ttcgatgatt gcttcactat tgaaccggat ctgccgttca
     6541 agtcattcct gtaatctgtc gtttataccg gatagcgtgg agaagttcgc gctatccggc
     6601 gtagtatttc ctggctattt caaatatcat ctaaaaaaat caaattttat cggaatagct
     6661 catgactgaa gcacaaagac atcaaatcct cctggaaatg ctcgcacaat tgggctttgt
     6721 gaccgttgag aaagtcgttg agcgtctggg aatttcgcct gccactgcgc gacgcgatat
     6781 caataaactt gacgaaagcg gcaaactcaa aaaggtgcgc aatggcgcag aagctattac
     6841 ccaacagcgc ccgcgctgga cgccgatgaa tctgcatcag gcgcagaatc acgatgaaaa
     6901 agtacgtatt gctaaagcgg cctcgcagct ggttaatccg ggcgaaagcg tagtcatcaa
     6961 ctgcggctcc accgcgtttc tgcttgggcg ggaaatgtgt ggcaagccag tgcaaatcat
     7021 cactaattat ctaccgctgg caaattacct gatcgatcaa gaacatgaca gcgtgatcat
     7081 tatgggtgga cagtacaaca aaagtcagtc catcacttta agcccgcagg gcagcgaaaa
     7141 cagtctctat gccgggcact ggatgtttac cagcggaaaa gggctgaccg cagaagggtt
     7201 gtataaaacc gatatgctga cagcaatggc agagcagaag atgctgagcg tggtagggaa
     7261 actggtggta ctggttgata gcagtaagat tggcgaacgc gcgggaatgc tttttagccg
     7321 tgccgatcaa atcgatatgc ttatcaccgg caaaaatgct aacccggaaa tcctgcaaca
     7381 actggaagcg caaggggtca gcattctgcg tgtttaaaga tgctggcgga aaaatgtcac
     7441 ggcagcatct aacgcctcag gcgtaatgcg gtgacgcacg cctggctgcc atgaacaggt
     7501 tagcagttta tcccgtcccg tctcgcttaa ggcctgctgc aaacgtagtg attcgtcggc
     7561 aggcacaacg tcatcctcga ggccatgcca cagcagtaga ggtctgtccc caagttgttc
     7621 caggtggttt gtcgcttccc actctgccag cggcgcgata atgttattga attcattctg
     7681 ctgtgctgcc gtttcaggta tcagcggtgg aaacagtgaa cgggcgagcg atgtaaaata
     7741 gcccgatccc atcatgctgg cggtacattt caccgtgggg tggcgagcgg taattcccag
     7801 tgccgtcatc gcgcccatcg acgcgccacc gactgccaga cggtcatcaa gcagccagtt
     7861 ttcttcggct attgccgcac gtaaagtagt gaattcctgc atactttgta gcaagatttg
     7921 ccagaattga tttaaccgcc gcgcttcgtc gctactaaaa cggctaccgt gatcgggcgc
     7981 atccggcatg atcacccgca aaccagcctg cgccagcaca acggcaaaat agctatacac
     8041 caggctggat gaagtaaagc cgtgataaaa aattacgcac ggtaacgggg tatctttttg
     8101 cccgacagga taagcatgaa gaacgggaat atctgccagc tcgcgtgatt ctatttcaat
     8161 catctgtctc tcctttttgt ctggtatgac atgaagaaat ccttagcaca agtttctgct
     8221 ggcggtatta gttcataatg ttgagatgtg ggttacgctt tcgtcacgtt ttcattcgaa
     8281 aatcgcgtac caggtaacaa ttcgggaaca ttcccccaaa gttaaattaa taaggcacta
     8341 cactatggtt agcaggaaac gtaatagcgt tatttaccgg tttgccagtt tattattggt
     8401 gttgatgtta agtgcctgta gcgcactgca aggtacgcca cagccagcac cgccagtaac
     8461 gaaccatccg caagagattc gccgcgacca gacgcaaggg ttacagcgaa taggtagcgt
     8521 aagcacgatg gttcggggtt ctccggatga cgcattagca gaaatcagag caaaagctgt
     8581 cgctgcaaaa gctgattatt acgttgtcgt catggtggac gaaaccatcg tgacaggaca
     8641 gtggtattca caagccattt tgtaccgtaa ataaatcaga caacttacat agtcagcttt
     8701 acattgcttt acgtccctat gcgtttacct gtgcacaata aattaccggc tggaagcctg
     8761 ggcgtttatt accgcgatgg aatgccctgc aacatgtggg gaaacgaaaa atggagctga
     8821 cgatgaaaca attacttgct tcaccctcgc tgcaattagt gacttatcct gcgagcgcca
     8881 cggcacagtc tgcagaattc gccagtgctg actgcgtgac gggcctgaat gaaataggtc
     8941 agatctcagt tagcaatatt tcaggggatc cgcaggacgt ggaacgtatc gtggcgttaa
     9001 aggccgatga acaaggtgcg tcatggtacc gcattattac catgtacgaa gaccagcagc
     9061 ctgataactg gcgcgtacag gcgatactgt atgcatgagt gtcatctaca gcaaatgaac
     9121 aatgccggat tcggcgcgag cgccttgtcc ggcctacaat tttcacatat ttcattgagt
     9181 taatcgaaac cagcgtcgca tcagtcgtat acgcttacac acacactccc cccgtcgccc
     9241 gcagcaataa atcattctgg atctgctctg acaaccgtac gccgccgcgc gtatctaaca
     9301 tcacctgaca ccacgcctgc gccattggcg gagaagcata tttcaacatt tgcgcaccgc
     9361 agcccagcag gaatagctga tgagtaatct ctcgccccag ttcttcagct ggcttacgca
     9421 gctgctgctg taaacgacga accgcgcgat caaaatagcg atcctgccct ttcacttcca
     9481 caaatgcttc cgacaataag tcgtatacgc ccgcttgctt attgagaacg cgcaacacat
     9541 ccaggcacat aatattgccg gaaccttccc aaatactgtt taccggcatc tcccggtaaa
     9601 gccgcggcag ctcgctctcc tcgcaataac caatgccgcc cagcacctcc atcgcttcgg
     9661 ccacaaacgg catacctctt ttgcagatca caaattttgc cgcaggcgta aataaacgcg
     9721 cccacagggc ttctttggca tcggcacgcc ggtcccacgc tcgcgcaaga cgaaacagca
     9781 acgccgtttg cccttcaagc tgaagtgcca tgcgacttaa gacatgacac ataaggggct
     9841 gttggatcaa tggattacca aaaacatggc gttgatgtgc atgataaatc gccagcgaaa
     9901 atgcacggcg catcatggca tggctaccca gggcgcaatc aaaacgcgtc atcccaccca
     9961 ttttcaggat cagacgaatt ccttcccctt cctgccccaa caaccagcca atggcatcct
    10021 gaaactccac ttcgcaactg gcgttagagc gattacccag cttatctttc agccgctcga
    10081 ggcgaatcgc gttgcgttgc ccatcaggca aaaagcgcgg cacaaaaaag caggacaaac
    10141 cgcccgtagt ctgcgccagc accagatgcg catcgctttg cggcaccgag aaaaaccatt
    10201 tatgccccac cagccgataa gagccatctt ccagacgctc tgcacgggtg gtgttgctca
    10261 tgacatcgga accgccctgc ttttccgtca ttcccatgcc aatcaacaaa ccgcgttttt
    10321 gcccacctgg caataagtga gaatcgtagc gatcgctcag cagcggcgtg gtccagtcct
    10381 gaaacggcgt gggtaacatc tgtaacaaca atggcgtggc ggcaaaggtc atcgttattg
    10441 gacataacga cccagcctca acctgcgcat gtaacataaa acgcgccgcg cgcgccacaa
    10501 atgcgccgga gcgagcgtct tcttcccagg caagattgtg cacccgattg gtacataacg
    10561 cctgcatcag caggtgccag gcggggtgaa aacgcacatc gtccagacgg cgtccttgcg
    10621 catcgtagcg caataattca ggcggattca cattcgccag ccgccccagt tcaagagatt
    10681 cagccgttcc taactgctga ccaatactgg ctagaaaatc gctatcccag ccagcacctt
    10741 cacgcgttac cgcttcacag agcgcgccat cagacaggta taagttgctg ttatttaatg
    10801 gtataggttg attaaaaacg gtgtgagttt gccagtgcac tgtgtctccc tccatcaatg
    10861 gcagtcaccc ttagtatggt cactgccatg gattcctgac agaaagagat tgctaaaaca
    10921 ttcttatcca gcaatgtaat gcggaacgaa acgtgaggtg tctttggtga tcagcgtgtt
    10981 atcttcacgg atccccattc cgcacgcttc atcatcgaca atccagctac cgatgagtgt
    11041 gtagctatcg ccaaatcgcg gcagaggttg aaacgcctgg tagatcatcg gttcatcggc
    11101 gtaatcacca tcagcgtggt caacgacgtt attctgaccg tcgaaaatgg tgacgtttcc
    11161 gccttcgcgt gagtagatcg gtttacgcac atagctttcg ccagcggcaa tctgcggttt
    11221 ttcgccctca aaccaggatg caagaaggtt aggatgacca ggaaagaagc gccaaagcag
    11281 cggcattagc cctttattac tcaagatact tttccataac ggctccaccc attgctcgcg
    11341 acgcttgcgc agcagcggac cgttatcgtc acgcatcatc cactccagcg gatacagctt
    11401 aaatgcacgc tggatgacat tatcatcaag atcggtcagt acgccgccga cgcccaaacc
    11461 gagatcttca atgtagataa accgcgactc ctgccctgcc tgctgggcgc agtcctgcaa
    11521 gtacagcacg gtactcctgt tttcatcggt gtcctgacag cagcaaaaat aaaacggttc
    11581 ccgactgtaa agctcactaa agcgcgaaat caggcgttcc tgaatggcgt tgtactccag
    11641 cagcttcacc ggcgcattgc cacaccaggc aaaatccatc cggccataca gcgaaggatc
    11701 gcgtgcgcgc cagctttcgg cgatcacatc ccagtacaac ggcgggatcg ccagttgcgt
    11761 caggatctct tcgtctttaa ccgcgcgatc caccacctca aggcacatct gatgcagttc
    11821 cgcagtcggt ttttcgatct gctcttcaat ctggcgcaga gtaaaacggt aagcccgact
    11881 ctcgtcccaa tagatttcat tgtcgatgat atgaaagtcg aaaccgttgt tagcggcgat
    11941 ctggtccaga ccccgtcgca caggaacgtt gtgtctcagc atgattagcc tccccaatgc
    12001 ccacgggcgc tggaagaacg accatagccg ccgcgcgaaa cggttgacgc ttttttggtg
    12061 gtaaagccgc ctgaagagta agactctttt ttgccagaac cggagcgcca ggagtaatca
    12121 ccggaagtgt tgcgccagac ggggcgggaa gcaaatgagg atccgccgct gttatagacg
    12181 aacggctcat cgcgatcttt acgaataacc cggcttaaca aaaatccaga aacgaccggg
    12241 atccaactct gttcaacatt gtcgtagtag caattttcgt acttagactg acaattctgc
    12301 tgagtcatat tcttcggaac atcggcataa aatgccgctt tggcgttgtt ccagccacgc
    12361 gcgcaaatgt cggcattatt accgtcatca atacaatcct gcactgtcga ataaaacgtt
    12421 ccgtcgccgt cgttatcgac atcgccacta tcgccacaac ctttcaatac aaaaaaagcg
    12481 gcaccgccca ttagcgccaa cgttaagtat ttttgtgcgt agcgattgcg acgcggttca
    12541 aaaggat
//
LOCUS       DAJVUN010000120        12543 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.120, whole genome shotgun sequence.
ACCESSION   DAJVUN010000120 DAJVUN010000000
VERSION     DAJVUN010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12543
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.120"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..702)
                     /gene="rarD"
                     /locus_tag="OQQ76_002824"
     CDS             complement(<1..702)
                     /gene="rarD"
                     /locus_tag="OQQ76_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HCS1969258.1"
                     /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI
                     WSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA
                     SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS
                     FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMLLNLLLIA
                     AGIVTTVPLLCFTAAA"
     gene            complement(754..1221)
                     /locus_tag="OQQ76_002825"
     CDS             complement(754..1221)
                     /locus_tag="OQQ76_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312777.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HCS1969259.1"
                     /translation="MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAF
                     KNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTI
                     DLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG"
     gene            1386..2255
                     /gene="pldA"
                     /locus_tag="OQQ76_002826"
     CDS             1386..2255
                     /gene="pldA"
                     /locus_tag="OQQ76_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HCS1969260.1"
                     /translation="MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQ
                     EHGNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGIL
                     GPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY
                     NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLK
                     IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQ
                     TRVGVGVMLNDLF"
     gene            2388..4217
                     /gene="recQ"
                     /locus_tag="OQQ76_002827"
     CDS             2388..4217
                     /gene="recQ"
                     /locus_tag="OQQ76_002827"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026263.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HCS1969261.1"
                     /translation="MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL
                     VVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE
                     QQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
                     EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM
                     EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA
                     DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA
                     EAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG
                     RQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDY
                     GHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSL
                     QLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEM
                     AEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE"
     gene            4281..4901
                     /gene="rhtC"
                     /locus_tag="OQQ76_002828"
     CDS             4281..4901
                     /gene="rhtC"
                     /locus_tag="OQQ76_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine export protein RhtC"
                     /protein_id="HCS1969262.1"
                     /translation="MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG
                     ITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAP
                     APQIELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVET
                     LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR"
     gene            complement(4963..5583)
                     /gene="rhtB"
                     /locus_tag="OQQ76_002829"
     CDS             complement(4963..5583)
                     /gene="rhtB"
                     /locus_tag="OQQ76_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HCS1969263.1"
                     /translation="MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIA
                     GLQTGLAIHIVLVGVGLGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSL
                     ASTQSRRHLFQRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLIQYIVLGVTTIVVDII
                     VMIGYATLAQRIALWIKGPKQMKALNKIFGSLFMLVGALLASARHA"
     gene            5695..6717
                     /gene="pldB"
                     /locus_tag="OQQ76_002830"
     CDS             5695..6717
                     /gene="pldB"
                     /locus_tag="OQQ76_002830"
                     /EC_number="3.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase L2"
                     /protein_id="HCS1969264.1"
                     /translation="MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVR
                     FVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADP
                     HLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIA
                     LTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRY
                     RRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNR
                     MHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSG
                     NRSTEV"
     gene            6725..7525
                     /gene="yigL"
                     /locus_tag="OQQ76_002831"
     CDS             6725..7525
                     /gene="yigL"
                     /locus_tag="OQQ76_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar/pyridoxal phosphate phosphatase YigL"
                     /protein_id="HCS1969265.1"
                     /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGR
                     HHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDII
                     TNVYRDDEWFMNRHRPEEMRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPL
                     EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMND
                     AEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS"
     gene            7601..8500
                     /gene="bioP"
                     /locus_tag="OQQ76_002832"
     CDS             7601..8500
                     /gene="bioP"
                     /locus_tag="OQQ76_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="HCS1969266.1"
                     /translation="MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFL
                     PFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIY
                     DIMNKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKR
                     LMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIG
                     YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVH
                     RKWVAPRSSQTADDRRRDCALSE"
     gene            complement(8388..9341)
                     /gene="metR"
                     /locus_tag="OQQ76_002833"
     CDS             complement(8388..9341)
                     /gene="metR"
                     /locus_tag="OQQ76_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MetR"
                     /protein_id="HCS1969267.1"
                     /translation="MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRL
                     GFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQ
                     WLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD
                     YEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSV
                     DNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP
                     VTEAFIRSARNHACDHLPFVKSAERPTYDAPTVRPGSPARL"
     gene            9577..11838
                     /gene="metE"
                     /locus_tag="OQQ76_002834"
     CDS             9577..11838
                     /gene="metE"
                     /locus_tag="OQQ76_002834"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HCS1969268.1"
                     /translation="MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELR
                     ARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRG
                     RAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLEEVDEALALGHNVKPV
                     LLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELP
                     QAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDGVAEL
                     HKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSV
                     ETRLDAEVKSWFAFALQKCHELALLRDALKSGDTAALAEWSAPIQARRHSTRVHNPAV
                     EKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKG
                     NLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW
                     VQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE
                     DVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEA
                     FRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDY
                     PNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAAL
                     ANMVQAAQNLRRG"
     gene            complement(12123..12368)
                     /locus_tag="OQQ76_002835"
     CDS             complement(12123..12368)
                     /locus_tag="OQQ76_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HCS1969269.1"
                     /translation="MITETEINVLKVMAEKDINWNWMNLDRTLSIRQIPGFGNVVNIV
                     NKLANEGLVIIEDSGHKSMPHYHVTEKGYNFVKSENK"
BASE COUNT         2957 a         3170 c         3362 g         3054 t
ORIGIN      
        1 agcagctgcg gtaaaacaca acagcggtac ggtggtgaca ataccggcgg cgatcagcag
       61 caaattcagc aacatcgggt tttgccccat atggctggtt gagctgtcgg caatagcaaa
      121 cagataaatc gccgccacgg gcagcagcca catggtttcg attaacatgc cggtttgcgc
      181 ttcaacggca attttcttgc gtaccagtcc gtagaaggca aaactaaacg ccagccccag
      241 cgcgatgatt ggcagcgaac caaaagtcca caactgaacc aacacgccac atatcgccag
      301 aatcaccgcc agccattgca tccggcggaa tcgctcgccg aggaaaatca tccccagcac
      361 aatgttcacc agcgggttaa taaagtaacc aaggctcgct tccagcatat ggtgattgtt
      421 caccgcccag ataaacagta gccagttgcc accaatcagc acggcagaga ctgccagcat
      481 aaaaattttc tgtggcgtct gaatcagcgt ttttaaatag gaccactggc ggcaaatgct
      541 catcagcacc accataaaga aaaacgacca gatcacgcga tgcgtcagga tctcatcggc
      601 gggcacgtag taaatcagct tgaagtatgc tggcgcaata ccccaaataa aataagcggc
      661 aagagcgagt aatacgccct gccgcgtttg ttttgcatcc atcgggaata ctcattttta
      721 attggtaaca gcagtttacc tgcttttatg tcttcaacct accatatagg tggcggtggc
      781 actggcaata taaagctgtt cttcattgtg taattcaacg cgggcgacgg cgactttatt
      841 gcctgcacgc aacaggctac tggtagcagt aaaacgctcg cccctgcctg ggcgcagata
      901 atcaacgcga agatcaatgg tccccatccg cgatagccgc tggcgtagtt catcttcact
      961 gatggtttcg tggcgggtta aggtacttcc cacgcacacc agaccggcgg cgacatccag
     1021 cgccgacgca atgactccgc cgtgcaaaat gctttgcgcc cagttaccca ccatcatcgg
     1081 ctgattttta aaggccagct gtgcgaactc tttttcgtaa cgctccagct ccatccctaa
     1141 cgcgcggtta aatggcatgt gataaacaaa catctcaccc actaatttca gggcttgttc
     1201 agcggtcagt acggcagaca tatcatcctt acacttcatt ggttaatgaa atgttgattt
     1261 tatgcttctt tgttgttagt ttctacttta ggaagggata actaacggca atggagttaa
     1321 gtatgtaaaa tagcccgcag aaaaacattc accttatcaa taattcgtta cggagaacac
     1381 gaccgatgcg gactctgcag ggctggttgt tgccggtgtt tatgttgcct atggcagtat
     1441 atgcacaaga ggcaacggtg aaagaggtgc atgacgcgcc agcggtgcgt ggcagtatta
     1501 tcgccaatat gctgcaggag catggcaatc cgttcacgct ctatccttat gacactaact
     1561 acctcatcta cacccaaacc agcgatctga acaaagaagc gattgccagt tacgactggg
     1621 cggaaaatgc gcgtaaggat gaagtaaagt ttcagttgag cctggcattt ccactgtggc
     1681 gtgggatttt aggcccgaac tcggtgttgg gtgcgtctta tacgcaaaaa tcctggtggc
     1741 aactgtccaa tagcgaagag tcttcaccgt ttcgtgaaac caactacgaa ccgcaattgt
     1801 tcctcggttt tgccaccgat taccgttttg caggttggac gctgcgcgat gtggagatgg
     1861 ggtataacca cgactctaac gggcgttccg acccgacctc ccgcagctgg aaccgccttt
     1921 atactcgcct gatggcagaa aacggtaact ggctggtaga agtgaagccg tggtatgtgg
     1981 tgggtaatac tgacgataac ccggatatca ccaaatatat gggttactac cagcttaaaa
     2041 tcggctatca cctcggtgat gcggtgttga gtgcgaaagg acagtacaac tggaataccg
     2101 gttacggcgg cgcggagtta ggcttaagtt acccgatcac caaacatgtg cgcctttata
     2161 ctcaggttta cagcggctat ggcgaatcgc tcatcgacta taacttcaac cagacccgtg
     2221 tcggtgtagg agttatgcta aacgacttgt tttgatgaac ggttgagtgg ttggcaaatc
     2281 tggaacccag catccaggat taccctctca gagactaaaa gcattgcagt ttctcgcgca
     2341 ggcgctgaaa atagcgcctg tttttatttc aggcaatcgg ggtgaatgtg gcgcaggcgg
     2401 aagtgttgaa tctggagtcc ggagctaaac aggttttaca agaaaccttt ggctaccaac
     2461 agtttcgccc cggccaggaa gaaattatcg acactgtgct ttccggtcgc gattgcctgg
     2521 tcgtcatgcc caccggtggc ggaaaatccc tttgctatca aattcctgcc ttattgctaa
     2581 acggccttac cgtggttgtt tcaccgctga tttcgttgat gaaagatcag gtggatcaac
     2641 tgcaagccaa cggcgtggcg gcggcgtgcc ttaactcgac gcaaacccgc gagcagcaac
     2701 ttgaagtgat gacaggctgc cgcaccgggc aaattcgtct gctttatatc gccccggaac
     2761 gcctgatgct ggataacttt cttgagcatc tggcgcactg gaatccggtg ttattagccg
     2821 ttgatgaagc gcactgtatc tcccaatggg gccacgattt ccgcccggaa tatgccgcgc
     2881 ttggtcagtt acgccagcgt ttcccgaccc tgccgtttat ggcgctgact gccacagccg
     2941 acgacaccac gcgccaggat atcgtgcgct tgctggggct gaacgatccg ctgattcaaa
     3001 tcagcagttt tgaccgtccg aatattcgct acatgctgat ggagaagttc aaaccgctcg
     3061 atcagttgat gcgctacgtg caggaacagc gcggtaagtc aggcattatc tactgcaaca
     3121 gccgcgcgaa agtagaagac accgctgcgc gcctgcaaag caagggaatt agcgcggcgg
     3181 cctatcatgc tgggctggaa aataatgttc gcgccgacgt gcaggaaaaa tttcagcgcg
     3241 atgacctgca aattgtggtg gcgacggtgg cgttcggcat gggcatcaat aaaccaaacg
     3301 ttcgcttcgt ggtccacttt gatattccgc gcaatatcga atcctattat caggaaaccg
     3361 gtcgcgccgg gcgtgatggc ctgcccgcgg aagcgatgct gttttacgat ccggccgata
     3421 tggcgtggct gcgccgttgc ctggaagaga agccgcaggg gcagttacag gatatcgaac
     3481 gtcataaact caatgcgatg ggcgcttttg ccgaagcgca aacttgccgt cgtctggtat
     3541 tgctgaacta ttttggcgaa gggcggcaag agccgtgcgg gaactgcgat atctgcctcg
     3601 atccgccgaa acagtacgac ggttcaaccg atgctcagat tgccctttcc accattggtc
     3661 gtgtgaatca gcggtttggg atgggttatg tggtggaagt gattcgtggt gctaataacc
     3721 agcgtatccg cgactatggt catgacaaac tgaaagtcta tggcatgggc cgtgataaaa
     3781 gccatgaaca ttgggtgagc gtgatccgcc agctgattca cctcggcctg gtgacgcaaa
     3841 atattgccca gcattctgcc ctacaactga cagaggccgc gcgcccggtg ctgcgcggcg
     3901 aatcctcttt gcaacttgcc gtgccgcgta tcgtggcgct caaaccgaaa gcgatgcaga
     3961 aatcgttcgg cggcaactat gatcgcaaac tgttcgccaa attacgcaaa ctgcgtaaat
     4021 cgattgccga tgaaagtaat gtcccgccgt acgtggtgtt taacgacgca accttgattg
     4081 agatggctga acagatgccg atcaccgcca gcgaaatgct cagcgttaac ggcgttggga
     4141 tgcgcaagct ggaacgcttt ggtaaaccgt ttatggcgct gattcgtgcg catgtcgatg
     4201 gcgacgacga agagtagtca gcagcataaa aaagtgccag gatgaagact ccgtaaacgt
     4261 ttcccccgcg agtcaaatgt atgttgatgt tatttctcac cgtcgccatg gtgcacattg
     4321 tggcgcttat gagccccggt cccgatttct tttttgtctc tcagaccgct gtcagtcgtt
     4381 cccgtaaaga agcgatgatg ggcgtgctgg gtattacctg cggcgttatg gtttgggcag
     4441 ggattgcgtt gcttggcctg catttgatta tcgaaaaaat ggcctggctg catacgctga
     4501 ttatggttgg cggtggcctg tatctctgct ggatgggtta ccagatgcta cgcggtgcac
     4561 tgaaaaaaga ggctgtatct gcgcctgcac cacagattga gctggcgaaa agcgggcgca
     4621 gtttcctgaa aggtttactg accaatctcg ctaatccgaa agcgattatc tactttggct
     4681 cggtgttctc attgtttgtc ggtgataacg ttggcactac cgcgcgctgg ggcatttttg
     4741 cgctgatcat tgtcgaaaca ctggcgtggt ttaccgtcgt tgccagcctg tttgccctgc
     4801 cgcaaatgcg ccgtggttat caacgtctgg cgaagtggat tgatggtttt gccggggcgt
     4861 tatttgccgg atttggcatt catttgatta tttcgcggtg atgccagacg cgtcttcaga
     4921 gtaagtcgga taaggcgttt acgccgcatc cgacattatt tttcacgcat gcctcgccga
     4981 tgctaacagc gctcccacca gcataaacaa cgagccgaaa atcttattca gcgccttcat
     5041 ctgctttggt cctttaatcc atagagcaat ccgttgagca agggtggcgt aaccgatcat
     5101 cacaataata tcgactacaa tagtggtgac gccgagcacg atatactgaa tcagttgcgg
     5161 ctgctgtggc atgatgaatt gcggaaatag cgccgccaga aacacaatac ttttgggatt
     5221 ggtgagattc acaaaaactg cgcgctggaa caaatgtcga cgcgattgag tagaggccag
     5281 cgatttaagg tcaattgcac cagcggcgcg ccactgctgg attcccagcc aaatcaagta
     5341 agccgcgcct gcccacttca acacttcaaa cgcaatcact gagcgggaaa atagcgtccc
     5401 caaccccacg ccaaccagca caatatgaat cgccagtccg gtctgaagcc cagcaataga
     5461 cgccaccgcg ccgcgataac cgtggttgag cgaggtggtc atagtgttga ttgcaccaga
     5521 gcctggcgac aggcttaaaa tgatcgatgt cagcaggtag gcaaaccacc attctaaggt
     5581 catgatgaac tcccggtgta tctatttttg tgccacaata cgctactgtc gcagcgttgt
     5641 gtcaggcacg ctaaaaaaaa acgattttac gtggtttaag aggcagatta cccgatgttt
     5701 cagcagcaaa aagactggga aacaagagaa aacgcgtttg ctgcttttac catgggaccg
     5761 ctgactgatt tctggcgtca gcgtgatgaa gcagagttta ctggtgtgga tgacattccg
     5821 gtgcgctttg tccgttttcg cgcacagcac catgaccggg tggtagtcat ctgcccgggg
     5881 cgtattgaga gctacgtaaa atatgcggaa ctggcctatg acctgttcca tttggggttt
     5941 gatgtcttaa tcatcgacca tcgcgggcag ggacgttccg gtcgcctgtt agccgatccg
     6001 catctcgggc atgttaatcg ctttaatgat tatgttgatg atctggcggc attctggcag
     6061 caggaggtcc agcccggtcc gtggcgtaaa cgctatatac tggcacattc gatgggcggt
     6121 gcgatctcca cattatttct gcaacgccat ccaggtgtat gtgacgccat tgcgctaact
     6181 gcgccaatgt ttgggatcgt gattcgtatg ccgtcattta tggcacggca gatcctcaac
     6241 tgggccgaag cgcatccacg tttccgtgat ggctatgcaa taggcaccgg gcgctggcgc
     6301 gcgttgccgt ttgctatcaa cgtactgacc cacagcagac agcgatatcg acgtaactta
     6361 cgcttctatg ctgatgaccc aacgattcgc gtcggtgggc cgacctacca ttgggtacgc
     6421 gaaagtattc tggctggcga acaggtgtta gccggtgcgg gtgatgacgc cacgccaacg
     6481 cttctcttgc aggctgaaga ggaacgcgtg gtggataacc gcatgcatga ccgtttttgt
     6541 gaactccgca ccgccgcggg ccatcctgtc gaaggaggac ggccgttggt aattaaaggt
     6601 gcttaccatg agatcctttt tgaaaaggac gcaatgcgct cagtcgcgct ccacgccatc
     6661 gttgattttt tcaacaggca taactcaccc agcggaaacc gctctacaga ggtttaaatt
     6721 tcttatgtac caggttgttg cgtctgattt agatggcacg ttactttctc ccgaccatac
     6781 gttatcccct tacgccaaag aaactctgaa gctgctcacc gcgcgcggca tcaactttgt
     6841 gtttgcgacc ggtcgtcacc acgttgatgt ggggcaaatt cgcgataatc tggagattaa
     6901 gtcttacatg attacctcca atggtgcgcg cgttcacgat ctggatggta atctgatttt
     6961 tgctcataac ctggatcgcg acattgccag cgatctgttt ggcgtagtca acgacaatcc
     7021 ggacatcatt actaacgttt atcgcgacga cgaatggttt atgaatcgcc atcgcccgga
     7081 agagatgcgc ttttttaaag aagcggtgtt caaatatgcg ctgtatgagc ctggattact
     7141 ggagccggaa ggcgtcagca aagtgttctt cacctgcgat tcccatgaac aactgctgcc
     7201 gctggagcag gcgattaacg ctcgttgggg cgatcgcgtc aacgtcagtt tctctacctt
     7261 aacctgtctg gaagtgatgg cgggcggcgt ttcaaaaggc catgcgctgg aagcggtggc
     7321 gaagaaactg ggctacagcc tgaaggattg tattgcgttt ggtgacggga tgaacgacgc
     7381 cgaaatgctg tcgatggcgg ggaaaggctg cattatgggc agtgcgcacc agcgtctgaa
     7441 agaccttcat cccgagctgg aagtgattgg tactaatgcc gacgacgcgg tgccgcatta
     7501 tctgcgtaaa ctctatttat cgtaatcgtt ctttatttgg tcagttgtca acctgatact
     7561 tcgctacaat ggatactcgt taatcaaaga gttttccatt gtggcgctac ttatcatcac
     7621 cacgattctg tgggccttct cctttagctt ttatggcgag taccttgcgg ggcacgtcga
     7681 tagctatttt gcggtgctgg tgcgcgttgg cctggcggca ctcgtttttc tgccgtttct
     7741 gcgtacccgt ggcaatagcc tgaaaacagt cggcctgtat atgctggtgg gcgcgatgca
     7801 gctcggcgtg atgtatatgc tgagtttccg cgcttatctc tatctgacgg tttccgaact
     7861 gctgctgttc accgtactga cgccgctcta catcacgctg atttatgaca tcatgaataa
     7921 gcgccgtttg cgctggggat atgcttttag tgccttgttg gcggtgattg gtgccgggat
     7981 tattcgctat gatcaggtca ccgaccattt ctggactggc ttgttgctgg tgcaactctc
     8041 caatatcact tttgccatcg gcatggtggg ttacaaacgc ctgatggaaa ctcgcccgat
     8101 gccgcagcat aacgcctttg cgtggttcta tcttggcgcg ttcctggtgg cggtaattgc
     8161 atggttcttg ctgggaaatg cgcagaaaat gccgcaaacc acgttgcaat ggggcattct
     8221 ggtgtttctt ggcgtggtgg cttccgggat tggctacttt atgtggaact acggcgcgac
     8281 gcaggtggac gccggaacgc tgggaattat gaataatatg cacgttccgg cagggctgct
     8341 ggtaaacctg gctatctggc accaacagcc gcactggcca acgtttatta caggcgcgct
     8401 ggtgatcctg gcctcactgt gggtgcatcg taagtgggtc gctccgcgct cttcacaaac
     8461 ggcagatgat cgcaggcgtg attgcgcgct gagcgaataa acgcttccgt aactggctga
     8521 cgctgctcgc catcgcgcac ggcggcgtac agtcggctcc acaagccttc gcccagggtt
     8581 ttggtcacca ccagaccctg gcgctcaaaa ctctctacta cccaatgcgg tagcgcggca
     8641 atacccatcc gcgcggcaac catctgaatc aacaataagg tgttatcgac gcttttcagt
     8701 gacggactga cgcctgccgg ctgaagaaaa tgccgccaga catccagtcg actacgctgc
     8761 accggataaa ttaatagcgt ctcgctggcg agatcttccg gtgtaatacg cgtttttgcc
     8821 gccagtggat ggtcaggtgc taacaccaga cgcacttcat agtcgaacat cggcgaataa
     8881 tgcagaccac tgcgcggcag aatatcggac gtcattacca gatccagctc tccctgttgc
     8941 aaggcgggct gcgggtcaaa tgtcacgccc gatttaaagt ccatctcgac ctgcggccag
     9001 ttcttatgga aattttctaa cgcgggcgtc agccactgta tacagctatg gcactcaatg
     9061 gcaatgcgca gacgcgtctg ctgcggttca ttgcaggctt gcagtgcctg gctaatttgt
     9121 ggcagcacct ggtttgccag ttgcaacagg atttctccct gcggtgtaaa gcgaagcggc
     9181 tggcttttac gcacaaatag ccggaagcca aggcgttgtt ccagatcgct aaactggtga
     9241 gacagggcgg attgcgtctg atgcaacgtc gccgcagcgg ctgcgagtga gccgcagttc
     9301 cgcaacgctt gtagcgtttt cagatgtttt acttcgatca tgaaagtcct tcacttcggc
     9361 atgaataatt tgcgcttgag gaatatacag taaccgccaa ttatggatgt gtaaacatct
     9421 ggacggctaa aatccttcgt cttttaaatt tatggtgcgt tggctgcgtt tctccacccc
     9481 ggtcacttac ttcagtaagc tcccggggat gaataaactt gccgccttcc ctaaattcaa
     9541 aatccatagg atttacatat aattagagga agaaaaatga caatattgaa tcacaccctc
     9601 ggtttccctc gcgttggcct gcgtcgcgag ctgaaaaaag cgcaagagag ttattgggca
     9661 gggaactcca cgcgtgaaga actgctggcg gtagggcgtg aattgcgtgc tcgtcactgg
     9721 gatcaacaaa agcaagcggg tatcgacctg ctgccggtgg gcgattttgc ctggtacgat
     9781 catgtactga ccaccagtct gctgctgggt aacgttccgg cgcgtcatca gaacaaagat
     9841 ggttcggtag atattgacac cctgttccgt attggtcgtg gacgtgcgcc gactggcgaa
     9901 cctgcggcgg cagcggaaat gaccaaatgg tttaacacca actatcacta catggtgccg
     9961 gaattcgtta aaggccaaca gttcaaactg acctggacgc agctgctgga ggaagtggac
    10021 gaggcgctgg cgctgggcca caacgttaag cctgtgctgc tggggccggt tacctggctg
    10081 tggctgggga aagtgaaagg tgaacagttt gaccgcctga gcctgctgaa cgacattctg
    10141 ccggtttatc agcaagtgct ggcagaactg gagaaacgcg gcatcgagtg ggtacagatt
    10201 gatgaacccg cgctggtact ggaactacca caggcgtggc tggacgcata caaacccgct
    10261 tacgacgcgc tccagggaca ggtgaaactg ctgctgacta cctattttga aggcgttacg
    10321 ccaaatctcg acacgattac tgcgctgcct gttcagggac tgcatgtgga ccttgtacat
    10381 ggtaaagatg gcgttgctga actgcacaag cgcctgcctt ctgactggct gctgtctgcg
    10441 ggactgatca atggtcgtaa cgtctggcgc gccgatctta ctgagaaata tgcgcaaatt
    10501 aaggacattg tcggcaaacg tgatttgtgg gtggcatctt cctgctcgtt gctgcacagc
    10561 cccatcgacc tgagcgtgga aacgcgtctt gatgcagaag tgaaaagctg gtttgccttc
    10621 gccttacaaa aatgccatga actggcactg ctgcgcgatg cgctgaaaag tggtgacacg
    10681 gcagctctgg cagagtggag cgccccaatt caggcgcgtc gtcactctac tcgtgtacat
    10741 aatccggcgg tagaaaagcg tctggcggcg atcaccgccc aggacagcca gcgtgcgaat
    10801 gtctatgaag tgcgtgctga agcccagcgt gcgcgtttta aactgccagc gtggccgacc
    10861 accacgattg gttccttccc gcaaaccacg gaaattcgta ccctgcgtct ggatttcaaa
    10921 aagggcaatc tcgacgccaa caactaccgc acgggcattg cggaacatat caagcaggcc
    10981 attgttgagc aggaacgttt gggactggat gtgctggtac atggcgaggc cgagcgtaat
    11041 gacatggtgg aatactttgg cgagcacctc gacggatttg tctttacgca aaacggttgg
    11101 gtacagagct acggttcccg ctgcgtgaag ccaccgattg ttattggtga cgttagtcgc
    11161 ccggcaccga ttaccgtgga gtgggcgaag tatgcgcaat ctctgactga taaaccggtg
    11221 aaagggatgc tgactggccc ggtgaccatt ctctgctggt cgttcccgcg tgaagatgtc
    11281 agccgtgaaa ccatcgccaa acaaattgcg ctggcgctgc gtgatgaagt ggcggacctg
    11341 gaagccgcag gaattggcat catccagatt gatgaaccgg cgctgcgcga aggtttaccg
    11401 ctgcgtcgta gcgactggga tgcatatctc cagtggggcg tggaggcctt ccgtatcaac
    11461 gccgccgtgg cgaaagatga cacacaaatc cacactcaca tgtgttattg cgagttcaac
    11521 gacatcatgg attccattgc ggcactggat gcagacgtca tcaccatcga aacctcgcgt
    11581 tccgacatgg agttgctgga gtcgtttgaa gagtttgatt atccgaatga aatcggtcca
    11641 ggcgtctatg acattcactc gccaaacgta ccgagcgtag aatggattga agccttgctg
    11701 aagaaagcgg caaaacgcat tccggcagag cgcctgtggg tcaacccgga ctgtggcctg
    11761 aaaacgcgcg gctggccaga aacccgcgcg gcactggcga acatggtgca ggcggcgcag
    11821 aatttgcgtc ggggatgatg aatattaacg agtcactgta aattgcagta cgatgaaaga
    11881 ggcaaaactg cctgatacca ggcctacata atttatgcaa tttattgaat ttttgagttt
    11941 tgttggccgg acaaggcgtt cacgccgcat ccggcatgaa caacgcgcac tttgccaata
    12001 atctgatggc ttccatcacc ggaagccatt ttgctatctg cgcccgttca gatacagaaa
    12061 taaccgaatc atttttacgc aaaatataat cctgagcgat ttgttcagta atcaacgcta
    12121 cgttatttat tctcactttt cacgaaattg tatccctttt cagtaacgtg gtagtgaggc
    12181 atagacttat gtccgctatc ctcaataata accaaaccct cgttagctaa tttgttaaca
    12241 atgttaacaa cattaccgaa tcctggaatt tgccttatgg atagtgtgcg atcgagattc
    12301 atccagttcc agtttatatc tttctcagcc ataactttca gtacgttaat ttcagtttca
    12361 gttatcatag tcaagtgcat cctggtggta taagtcatta agttctccct taagtttata
    12421 atcttctaga gtagcagtat gcgtatgatt ccagagtgca tagcctgcgt caccatcagg
    12481 ttgtcctgtt tcccaaccaa gattacagta acgctgatat tcccgacact catgagtata
    12541 gaa
//
LOCUS       DAJVUN010000121        12345 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.121, whole genome shotgun sequence.
ACCESSION   DAJVUN010000121 DAJVUN010000000
VERSION     DAJVUN010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12345
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.121"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            89..1009
                     /locus_tag="OQQ76_002836"
     CDS             89..1009
                     /locus_tag="OQQ76_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415843.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1969270.1"
                     /translation="MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVVSHPSG
                     GVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTT
                     LSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSMFRNGWENNVKSID
                     ALPYVEAGSNARTSDISSGEYAVMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPG
                     YATLRSLNQIITFDAYHMAEVYLTQPMQIVAGSQAGSKWMSDDLYDRASSQDKRYHIV
                     EGANHMDLYDGKAYVAEAISVLAPFFEETL"
     gene            1009..1941
                     /locus_tag="OQQ76_002837"
     CDS             1009..1941
                     /locus_tag="OQQ76_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000680621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCS1969271.1"
                     /translation="MKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAIISVHPFGSCK
                     EQTSGNIYGKALAEKGYLVLAYDASFQGESGGEPRWIEDPTQRVEDISRVIDYAVTLP
                     YVNAERIGVLGVCGGGGYAINAALTEKRIKAVVSITGVNIGRLFREGFSNYDPIGALN
                     AMASQRTKEARGGELQINELLPASLDAAKAHGLTERDVYEATDYYKTPRGQQPGGATK
                     MLFSHAQKTLAWDAFAFTEVLLTQPVMVVVGEKVGAFGAYRDGLEVYGRAMVSQDRQL
                     VSLPDFSHYELYDKPEAVQEALEKVIPFFNPHLG"
     gene            1959..2597
                     /locus_tag="OQQ76_002838"
     CDS             1959..2597
                     /locus_tag="OQQ76_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707232.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1969272.1"
                     /translation="MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP
                     TNSKIIMGDVLNHAALKQAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVKRLIFVL
                     SLGIYDEVPGKFGEWNNAVIGEPLKPFRRAADAIEASGLEYTILHPAWLTDEDIIDYE
                     LTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPVTDGDKPLFM"
     gene            2907..3635
                     /gene="mpaA"
                     /locus_tag="OQQ76_002839"
     CDS             2907..3635
                     /gene="mpaA"
                     /locus_tag="OQQ76_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415842.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide amidase MpaA"
                     /protein_id="HCS1969273.1"
                     /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI
                     LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP
                     AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL
                     ACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE
                     ASEKYLFAMAYLLRWHPKDAIRPS"
     gene            complement(3610..4575)
                     /gene="ycjG"
                     /locus_tag="OQQ76_002840"
     CDS             complement(3610..4575)
                     /gene="ycjG"
                     /locus_tag="OQQ76_002840"
                     /EC_number="5.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
                     /protein_id="HCS1969274.1"
                     /translation="MRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGE
                     CTPYPRYGESDASVMAQIMSVVSQLEKGLTREELQKILPAGAARNALDCALWDLAARK
                     QQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISER
                     MVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFIH
                     PLPICADESCHTRSNLKALKGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCM
                     LCTSRAISAALPLVPQVSFADLDGPTWLAVDVEPALQFTTGELHL"
     gene            4694..5200
                     /gene="tpx"
                     /locus_tag="OQQ76_002841"
     CDS             4694..5200
                     /gene="tpx"
                     /locus_tag="OQQ76_002841"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HCS1969275.1"
                     /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA
                     GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN
                     VITLSTFRNAEFLQAFGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE
                     AALAVLKA"
     gene            complement(5244..6785)
                     /gene="tyrR"
                     /locus_tag="OQQ76_002842"
     CDS             complement(5244..6785)
                     /gene="tyrR"
                     /locus_tag="OQQ76_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TyrR"
                     /protein_id="HCS1969276.1"
                     /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA
                     ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV
                     DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME
                     ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE
                     QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF
                     GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR
                     VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ
                     GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
                     AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ
                     KKNEE"
     gene            complement(6933..7994)
                     /locus_tag="OQQ76_002843"
     CDS             complement(6933..7994)
                     /locus_tag="OQQ76_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HCS1969277.1"
                     /translation="MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDE
                     APEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL
                     GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ
                     QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMI
                     AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR
                     EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRR
                     QLIGQVKETLQKGKTPSEK"
     gene            complement(7991..9388)
                     /locus_tag="OQQ76_002844"
     CDS             complement(7991..9388)
                     /locus_tag="OQQ76_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HCS1969278.1"
                     /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL
                     NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV
                     SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL
                     NGQRGEWSVKWRMMCEGLDPLAPADENRLADIAAAWTDYLHHCKQQGLHFIQPGRFVL
                     PGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF
                     LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF
                     AATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNG
                     EKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI
                     RLDAALEFLIGDKLR"
     gene            9543..10541
                     /locus_tag="OQQ76_002845"
     CDS             9543..10541
                     /locus_tag="OQQ76_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1969279.1"
                     /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL
                     QYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT
                     SHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHV
                     YSVDTDNFGDSIALTDTLIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRD
                     EWIVDGGYTHETALQAARELLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAV
                     VGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK"
     gene            complement(10652..11557)
                     /gene="ompG"
                     /locus_tag="OQQ76_002846"
     CDS             complement(10652..11557)
                     /gene="ompG"
                     /locus_tag="OQQ76_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monomeric porin OmpG"
                     /protein_id="HCS1969280.1"
                     /translation="MKKLLPCTALVMCAGMACAQAEEKNYWHFNIGAMYEIENVEGYG
                     EDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLEND
                     DFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFAN
                     HLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYL
                     PLTLGNHSLTPYTRIGLDRWSNWDWQDDIECEGHDFNRVGLFYGYDFQNGLSVSLEYA
                     FEWQDHDEGDSDKFHYAGVGVNYSF"
     gene            complement(11602..>12345)
                     /locus_tag="OQQ76_002847"
     CDS             complement(11602..>12345)
                     /locus_tag="OQQ76_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1969281.1"
                     /translation="RVNWAAQILGLREYLKRKPGALSGGQRQRVALGRAIVREAGVFL
                     MDEPLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMATRIVIMKDGIVQQ
                     VGAPKTVYNQPANMFVAGFIGSPAMNFIRGTIDGDKFVTETLKLTIPEEKLAVLKTQG
                     SLHKPIVMGIRPEDIHPDAQEENNISAKISVAELTGAEFMLYTTVGGHELVVRAGALN
                     DYHAGENITIHFDMTKCHFFDAETEIAIR"
BASE COUNT         3130 a         3238 c         2946 g         3031 t
ORIGIN      
        1 tgatttaggg tctaatcaac ttaatgatca atatctatag tgatatcacc aaccgttaaa
       61 acgaaccgac aactccatga ggaacggaat gatgaataat aaagtcagct tcactaacag
      121 caataatcca accatctctt tgtctgcagt gatctatttc cctccaaaat ttgatgaaac
      181 ccgtcagtat caggcaattg tggtatctca cccaagtggg ggcgttaaag aacaaacggc
      241 cggaacctat gccaaaaaac tggcggaaaa gggatttgtc actattgctt atgacgcatc
      301 ttatcaaggt gaaagtggcg gcgagccgcg tcagttagaa aacccataca ttcgtactga
      361 agacatcagt gccgtgattg attacctgac aacgctttct tatgtcgaca atacccgaat
      421 tggtgcgatg ggaatttgtg ccggtgcagg atatacagcc aatgctgcaa ttcaggatcg
      481 ccgcatcaag gccatcggta ccgttagtgc ggtcaatatt ggttcgatgt tccgtaatgg
      541 ttgggaaaac aatgtgaaat ctattgatgc cctgccatac gttgaagcgg gttcaaacgc
      601 ccgaaccagc gatattagca gcggagaata tgccgttatg ccactggcac caatgaagga
      661 gtccgatgcg ccgaacgaag aactgcgtca ggcctgggag tattaccaca cccctcgcgc
      721 gcagtatcca acagcaccgg gttacgctac tttgcgcagc cttaaccaga ttattacctt
      781 tgatgcttac catatggcgg aagtgtacct gactcagccg atgcagattg tggcgggcag
      841 ccaggcaggg agcaaatgga tgagtgacga tctgtacgat cgagcatcaa gccaagataa
      901 acgctatcac attgttgaag gcgcaaacca tatggatctt tatgacggca aagcctatgt
      961 ggctgaagca atttcagtat tagctccgtt ctttgaggaa actctgtaat gaaacatatt
     1021 caaatccgca atagtgatat ggcctggcat attgctgcca atattcagtt tccaccaaat
     1081 tttgatgagt caaaacagta tccggcgatt atcagcgtcc atccttttgg cagttgtaag
     1141 gagcagacgt ctggcaatat ctatggcaaa gcattggctg aaaaaggcta tctcgttctc
     1201 gcttatgacg ccagtttcca gggagaatct ggtggggagc ctcgctggat agaagatccg
     1261 acacagcgcg tagaggatat tagccgtgtt atcgattatg cagtaactct gccatatgtt
     1321 aatgctgaac gtattggcgt gctgggagtg tgtgggggtg gtggctatgc cattaatgcc
     1381 gcgctgacag aaaaacgaat taaagcagta gtgagtatta cgggtgttaa tatcgggcgt
     1441 ctttttcggg aaggtttcag caattacgat ccgattggcg cattgaatgc aatggcgtcg
     1501 caacgaacca aagaggctcg tggtggagaa ttacagatca acgaattact tcccgccagc
     1561 ctggatgcag caaaagccca tggactgacc gaacgcgatg tttatgaagc aactgactac
     1621 tataaaacac cacgcgggca acaaccggga ggtgcgacaa aaatgttgtt ctcacatgca
     1681 cagaaaacgc tggcctggga tgccttcgca tttactgaag tgttactgac tcagccggtg
     1741 atggtagtag ttggtgaaaa agtcggtgcc ttcggtgctt atcgtgatgg actggaagtc
     1801 tatggccggg cgatggtttc gcaggatcgt cagttagttt cattacccga tttctcacat
     1861 tatgaactgt atgacaaacc ggaagcagtt caggaggcgc tggaaaaagt tattcctttt
     1921 ttcaaccccc atctgggata agtttcatga gaaatattat gaaaaatgta ctgattcttg
     1981 gtgctggcgg tcagatagcc cgccatgtga ttaatcaact ggcagataaa caaaccatta
     2041 aacaaacttt atttgcccgt cagccagcaa aaatccacaa accctatcca actaatagca
     2101 agattattat gggagatgta ctgaatcatg cagcactgaa gcaggccatg cagggacagg
     2161 acgttgtgta tgccaacctt acgggggaag atttagatat tcaggcaaat tcagtgatcg
     2221 ctgcgatgaa agcctgtgat gttaaacgtc tgatctttgt tctttccctc ggtatttatg
     2281 atgaagttcc aggaaaattt ggcgaatgga ataatgcagt tattggtgaa cccctaaaac
     2341 cattccgcag ggctgcggat gcaattgagg cttctggact ggaatataca attcttcacc
     2401 ctgcctggct gactgatgaa gatattattg attatgagct tacctcacgc aatgaaccat
     2461 tcaaaggtac gatcgtatca cgtaagagtg tcgcagcatt aatcacagat atcatcgata
     2521 aacctgagaa acacattggt gagaatatag gtatcaatca acccgtgact gatggtgaca
     2581 agccattatt catgtaaatc aattacatag ttaccatcgt aatgtactat gtgcagtacg
     2641 atttattaaa cttattaagg tgaactgatc aatccgatgc gattaacatg tgtagaacca
     2701 gtaagaataa aatacgccat gtatataaca ttacgactta catctaagtc agcataattc
     2761 taatatctgc acatcaataa aaatgcaaac aacttccggc aaaaaaagtg atacaagatc
     2821 gatgacatag cgttgaagaa aaggatttga taatccgcaa aatttgcaca acactgcctg
     2881 taatacttcc tgaaccagag acgatcatga ccgtaacccg cccacgcgcc gaacgcggcg
     2941 catttccgcc cggaacagaa cattacggac gttcattatt gggcgcgccg ttaatctggt
     3001 ttcctgcccc tgcagccagc cgcgaaagtg gtttgattct ggctggcact cacggtgatg
     3061 aaaactcttc ggtcgtcacg ctctcctgtg ctctgcggac gttgacacct tctttgcgcc
     3121 gccatcatgt ggtgctgtgt gtgaatcctg acggctgcca gctggggtta cgggccaatg
     3181 ctaatggtgt ggatttaaac agaaactttc cggcggcgaa ctggaaggaa ggtgaaacgg
     3241 tttatcgctg gaacagcgcc gctgaagaac gtgatgtcgt attactgaca ggtgacaaac
     3301 ctggctcaga acctgaaacc caggcgctgt gccagcttat acaccgcatt caacctgcct
     3361 gggtggtctc attccacgat ccactggcct gtattgaaga tcccagacac agcgaattag
     3421 gcgaatggct ggcccaggcg tttgaattgc ctctggtaac cagcgtcggt tatgaaacgc
     3481 ctggctcttt cggcagttgg tgtgcagatc tcaacttgca ttgcatcacc gcagagtttc
     3541 cgcccatctc ctccgacgaa gccagcgaaa aatatctctt tgcgatggca tacttgctgc
     3601 gctggcatcc taaagatgca attcgcccgt cgtgaactga agcgccggtt ccacatctac
     3661 cgccagccag gtcggtccgt caagatcggc gaaactgacc tgcggcacca gcggtaaagc
     3721 ggcgctaatg gcacgagagg tacacaacat gcagcccagc atcagactga aaccttgtgc
     3781 acgcgcttca gtcgccagcg ccagcgcttc cgtcagacca ccggttttat cgagcttaat
     3841 gttaaccatc tcatagcgcc ctttcagcgc cttcagattg ctacgtgtat gacaactctc
     3901 atcagcacaa atcggcaacg gatgaataaa attctccagc gccgcatcgt cctgcgcagg
     3961 aaggggttgt tcaagcatcg caacgcctaa atccgccaat agctggcaac gcgccgccaa
     4021 cccttctgca cgccaggatt catttgcatc aacgatcagc gtcgcatcgg gcacagctgt
     4081 gcgaattgcc accatccgct cactaataag atggttatcc agcttcactt tcagtaattt
     4141 cgcgcctgcc tgccagagtg ttgatgcact attggccatc tgatcaggcg taccgatgac
     4201 taccgtctgt gcagtgataa ctgtctcggg aagcgttatg ccgatcaaat cagccagcga
     4261 ttgctgctgt tttcgcgcgg ccagatccca caatgcacaa tccagcgcat tacgtgctgc
     4321 gccggcaggg agaatttttt gcaactcctc ccgtgtcagc cctttctcta attgcgacac
     4381 gacgctcata atttgcgcca ttaccgaggc atcactttct ccataacgcg gatacggcgt
     4441 gcattcgccg gtgcctttaa taccctcttc ttccagttca accaccacca cgcgcgcttc
     4501 actgcgactt ccccgggcaa tcacaaacgg ggtatgtaag ggccaggctt cctcaaatac
     4561 cttaacggtt ctcatcttta ctccttgttg tcgcggtggt ctgcggatta agcgcaaata
     4621 gcgtttgctg tgttattgac agttagcata aactaggtgt gacgttaact atatgtaaac
     4681 aggaaagata atcatgtcac aaaccgttca tttccagggc aacccggtta cagtcgccaa
     4741 ttccatcccg caggcgggta gcaaagcgca gacttttact ctcgtggcaa aagatctgtc
     4801 tgacgtcacc ctcggtcagt ttgcgggtaa acgcaaagtg ctgaacattt tcccgagtat
     4861 tgataccggt gtttgcgccg catcagtacg taagtttaac caactggcaa ccgagatcga
     4921 caacaccgtt gtgctgtgta tttctgccga tctgccgttc gcccagtctc gtttctgcgg
     4981 cgcagaaggt ctgaacaacg ttatcaccct ctccactttc cgtaacgctg aatttctgca
     5041 agccttcggt gtggcaattg ctgatggccc actgaaaggt ctggcagcgc gtgccgttgt
     5101 ggttattgac gaaaatgaca atgtgatttt cagccagctg gtggatgaaa tcaccaccga
     5161 gccggattac gaagcagctc tggctgtact gaaagcataa gttaatatgc ctgatggtgt
     5221 tgcaccatca ggcatattcg cgcttactct tcgttcttct tctggcttaa gccatattcc
     5281 cgcaacttat tggcaatcgc ggtatgtgaa acgccgagac gttttgccag tttgcgcgtg
     5341 ctgggataat tgcgataaag ctgggttaat accgagcgtt caaaacggct ggtgatttcg
     5401 tccagcgaac cttccatcgc atcttcgccc acggctaccg ttgcggcgtc ataatccggc
     5461 aacaaaatat cctgtggacg cagctcataa ccgtccagtt gtgtcagtgc gcgatagata
     5521 gcgttcttta actgccgcac atttcccggc cacgcataac gcgtaagtac agtattcagg
     5581 tcagcggcca gtttcggacg cggcacgccc tgctcgtcgg caaagcgggc gacgaacagc
     5641 tcagttaacg gcatgatgtc ctgcggacag tcacgtagcg gcggcagatt gagcgtcaac
     5701 acgttcagac gataatagag atcttcacgg aacatgcctt tttgcaccag ttcgaccaga
     5761 ttcttctgcg tagcgcaaat cacccgcaca tcgacatgca cctcatggtc ttcgccaacc
     5821 cgacggaaag tgccatcatt aagaaaacgc agtaatttcg cctgcatccg tggtgacatt
     5881 tcccctattt catccaacag caccgaacca ccgttcgcct gctcaaagaa tcctttcttc
     5941 ccttccggag catgaccaaa cagttcactc tcgaccgcat cttccggtat agacgcacag
     6001 ttcagcgcca ggtaaggttt gcccgctctg gggcttgcct gatggcaggc gtaggcaaag
     6061 agatctttac ctgtacctgt gtcacccgta atcagcagcg gcgcgcttag catcgccagt
     6121 ttctgcgcct gttcgacaac atgcttcatt ttcgggctga cggcgacaat ttgactgaag
     6181 gcgctgacgt cctgggcggc gacattttgc aactggcggc ccatacgaat cgttgatcgc
     6241 aacatcacca ccgcaccggt caggacgtgt tgatcatttt catcctgaag ataaacaggc
     6301 gtaatctcca tcaggaaatt ctgcccatta ataacgacat gctcgttatg cgaatcttgc
     6361 ggttcgcttt ccagccaacg taaaaaatta aagccgttaa tcaattgtgc ggcggtatgg
     6421 ttgcgcaggc gatccaattt ttgcccaaaa agctgacagc tcgccgggtt cgccatatcc
     6481 actttgcttt tcatatcgac agagagcaca ggttcgggca acgcctccag taacgcgctc
     6541 aacgccagat gctcacgttc ggaaggcatc cacgggacag tacgcacatc ggtaacacct
     6601 gcaatacggc gtatttcggc catcagactg ctgaaactct caaactccag ttcagcaaaa
     6661 ttgaggtaga ttcgcccaat gggatcaatc tcaataccgc gtaaatcaat gcctcttagc
     6721 acgagtagat cgagtaattc gcgggtcaga ccgagtcggt cttcacaaaa gacttccaga
     6781 cgcatgggaa ccttcacctg aaaaaagaac aattaatatg atgatatgac actatttgga
     6841 tagcaggaag gtttctgtca acaatcattg acacaaagac ggaaaaacgg gcacttcggc
     6901 gtaaagatat ccggtcagca cccgatattg cattattttt cgctgggcgt tttgcctttt
     6961 tgcagcgttt ctttcacctg accgataagc tgacgacgga aatccccgag gcgaggtttg
     7021 tcatcgtcaa tccacggcag cgggcggcaa agctccatag ctttaatccc gagtcgtgcc
     7081 gtcagaagtc cagcaccaat tccctgagct gcgcgggtag acaaacgagc agcgagatct
     7141 tgcgacatcc agtccatccc cacttcgcgc accagttcgc tggctccggc aaaagcgata
     7201 ttcagcaata ccagcttaaa cagacgcaaa cggctgtaat accccagttc aatgccatac
     7261 agcgtggcga tgcgattaat taaacgcaga ttgcgccagg cgataaacgc catatcgacc
     7321 aacgccagcg ggctgaccgc aatcatcaac gttgattccg ccgccgaacg gctgatttcg
     7381 cgccgcgcct gggcatctaa aactggctgg accaaatgcg catacaaact gaccacttca
     7441 cggtcgtttt gcgtttcatg gattgaggca taccagcgtt gcagcgctgg atgagactga
     7501 tcaatacccg cctgctgcgc cagtttttcg caaaatgcgc ggcctttgcc cgtgccgtgg
     7561 ctgtgcaaca aatcgcgcgc ttcgtcgcgt tcatgggcgc gctgtcgcaa gcgccataag
     7621 cgccgccact ctgttaccac agaacctacg ccagcgccga taatcaatgc cccagcggca
     7681 catccaccca gcgccaccca gtcctgagtt tgccaggcat tcattgtcca ctgtacaccc
     7741 tgcccgacaa cgcttgcgcc aaacagagcc agcccgccca tcaccatttt gcgccacagg
     7801 ctgcgtttcg gacgtaacgc tgcatccatt accgcttcaa cttgcccctc ttcttcaggc
     7861 gcttcatcga gcgtggccgg ggcaaaattt tgcgcctgat tttcgtcaaa ggtctgctgc
     7921 gccctgaatt ttggattctg atcgacctcc agcggaccgt cgaaatcaat acgtggtttt
     7981 aacggttcgg tcatcgcaat ttatctccta ttaaaaattc cagcgcggca tcaagacgaa
     8041 tatgcggcag cggtttgtcg acatccatca cctgcgggcg aaacgcttca aactggaacc
     8101 cttgtttgtc ccagaacgcc tgaccgggca aacgcgcagg aacttcaccg ggataaacgg
     8161 tgagtggcgc accatcgctg agccggttac cgcgcaatgc cggaattttc tcgccgttga
     8221 cgtcaataat gccgctggtg gtcgcctgca ccgaggccag ccccaggcaa tccatactaa
     8281 tcccttcaaa cgccgcattt tgccaggcat cctgaatcag ttgttgcagt aatgaaacca
     8341 tattggcgtg ctgatcgatg gtcacatggt ccgctttagt ggcagcaaac aatagcttat
     8401 cgataaccgg cgaaaacaaa cgccggaaca aggtacgctg cccgtagtgg aaactttgca
     8461 tcagctgcgt cagtgccaga cgcatatcat taaatgcctg tggcccactg ttgagaggtt
     8521 gcaggcaatc aaccagcaca atctggcggt caaagcgcag aaaatgattc ttatagaacc
     8581 ccttcaccac cttctcgcag taataattaa accgctcgcg cagcattccg gcattggtgt
     8641 gcttatcggc ctgcgccagt ttggactcgc cccaggtatc gacatccggc cacgggaaga
     8701 attgcagcgc gggcgcacct gccatatctc ctggcaagac aaagcgccct ggctgaataa
     8761 agtgcagccc ctgctgttta cagtggtgga gataatcggt ccacgcggcg gcaatgtctg
     8821 ccagccggtt ttcgtcggca ggtgctagcg ggtccagccc ttcgcacatc attcgccatt
     8881 tgaccgacca ttcgccgcgc tgaccattga gtaagcccgt catctggcgt gaccagctta
     8941 aatagtcctg cgccagcatc ggcaggtcga gcaaccattc gccgggataa tccacaatct
     9001 ccagatacag cgtggaggtg tccttgaagt ggcgtagcag cgaatcgttc gatttaaaac
     9061 gtagcgccag gcggatttca ctgacgccgc gcgttggcgt cggccaggcg ggaggatcgc
     9121 catataactg cgccagtcct tcatcatatg tgaagcgcgg aatgccaaag tcacgctgag
     9181 gaatgcgttt tacgcccagc aggcgctctt cacgcaccgc gcttaacagc ggcaagcgtg
     9241 ctccggcgtg aatattgagc aactgattga ccatcgcagt gataaacgct gttttgccgc
     9301 tgcggcttag tccggttacg gcgaggcgca gatgtctgtc gacaccccga ttcaccagcg
     9361 cattaagttc atttttaagt cgcttcattg ctgtcctgtg ctgctctgaa gaccagaaaa
     9421 aaatcattcg taaggatatg aatgtggggg ccaggccatt gattatcaac tgcccgtgtt
     9481 gtcatcgacg ggcgaactcc ataagatgtg tagcattcac gttcggacgg agttcctgac
     9541 ctatgtcccc tactatttat gatattgcca gggttgcagg cgtatcaaaa tccaccgtat
     9601 cacgcgtgct gaataagcaa actaatatct ccccggaagc gcgcgaaaaa gtgttacggg
     9661 ccattgaaga attacagtat cagccaaaca agctggcccg cgcgctgacc tcttcgggtt
     9721 ttgatgccat tatggtgatt tctacccgtt cgaccaaaac tacggcgggt aatccgtttt
     9781 tctctgaagt tttgcatgcc atcaccgcca aagctgaaga ggaaggtttc gacgtgatat
     9841 tgcagacgtc gcacaatccg gcagaagact tacaaaaatg tgaaagcaaa attaagcaga
     9901 aaatgattaa aggcattatt atgctaagtt ctccagcgga tgagtcattt tttgcccaac
     9961 ttgataaata cgatattcct gtcgtggtga ttggcaaagt tgaaggtcaa tatgcccatg
    10021 tttattctgt cgataccgat aattttggcg acagcattgc gttgaccgat acattaattg
    10081 aaagtgggca tcaaaatatt gcctgcctgc atgctccgct tgatgtccat gtttcagtgg
    10141 atcgggtaaa tggttataag cagagcctgg ctgcgcataa tattgcagtg cgtgatgaat
    10201 ggattgttga cggtggttat acccatgaaa cagcactgca agccgcgaga gaattattaa
    10261 gccagtcacc gttgcctgag gcggtgtttg ccactgacag tctgaaatta atgagtattt
    10321 atcgtgcggc ggcagagaaa aatattgcta ttccgcagca gttagcggtg gtgggttata
    10381 gtaatgaaac gctgtcgttt attttaacac ctgcaccggg cggcatcgat gttccgacgc
    10441 aggagttagg tcaacaaagc tgcgagttat tattccgctt aatttctgga aaaccgtcac
    10501 cacagaatat taccgttgcc acgcatatga cgctgaaata aataccagct accttgcctg
    10561 aatgccggat gcgatgctag cgcatcttat ccggcctaca tttatagatc ggataaagta
    10621 ctcgcgccgc atccggcaat ttagcccatt atcagaacga gtaatttacg ccgacacctg
    10681 cataatggaa tttatcactg tcgccttcgt cgtgatcctg ccactcaaac gcgtattcca
    10741 gcgaaacgga aagtccgttc tggaaatcat aaccgtaaaa taaacctaca cggttaaaat
    10801 catggccttc acattcaata tcatcctgcc agtcccagtt actccagcga tccagcccaa
    10861 tgcgcgtata cggcgtcaac gagtggttgc cgagcgtcag cggcaaatag gcgcgaattt
    10921 cttgcgtgga aaactcaccg ttattgcggc tgtcgtccat attgaagccg cgctcgagat
    10981 aatagttcac tcgcaaggca accgtttcgt tgaaggtata ttgcagacct gtttccgttt
    11041 cgacacgggt atcagcgtaa ccggtagtgt tcagatggtt ggcaaattta tacatcgaca
    11101 accaaccgtt gaaacgtaaa tcgtcagtca gtttcacatc ccagtctggc gcgattttcc
    11161 agcgctgcat attcgccgtg tctttacccg gttcatcaac gtagtgataa ccataattac
    11221 ggaaaccgcc ggtcaggccg aaactgaaat catcgttttc gaggaactga taatgcacct
    11281 ccagctccgg gcgatcaaac cacgttccac gtttacccgc gctataatct accggccctt
    11341 cctgataata ggccagagca attctccacg gcccgttggc ggcattaaaa tagactgaag
    11401 gctccgccag cccatccata tcttcgccat aaccctcgac gttttctatt tcgtacatcg
    11461 cgccgatatt aaagtgccag tagttctttt cctcggcctg tgcgcaggcc attcccgcac
    11521 acatcaccag tgcggtacag ggtaataact ttttcattat tgttccttgt attattctgg
    11581 gggaatgcct tccccctgta tttagcgaat tgctatttcc gtttctgcat caaagaaatg
    11641 acatttcgtc atatcaaaat gaatagtgat attttctcct gcatgataat catttaacgc
    11701 accagcacgg accactaact cgtgcccccc aaccgtggtg tagagcataa attccgcacc
    11761 ggttaattct gccacgctaa ttttggcgga aatgttattt tcctcttgcg cgtccggatg
    11821 aatatcttcc ggacgtattc ccatcacgat gggcttatgc aaacttccct gtgttttcag
    11881 aaccgctaat ttctcttcgg gaatggttaa tttaagcgtt tccgtaacga atttatcgcc
    11941 atcgatcgtg ccacgaataa aattcatcgc cggtgatcca ataaatccgg caacaaacat
    12001 attcgctggt tggttataaa ccgttttcgg cgcaccaact tgctgaacaa tcccatcctt
    12061 cataatcaca atccgcgtcg ccatggtcat cgcttcggtc tgatcgtggg tcacgtagat
    12121 catggtggta ttcagcttct ggtgtagctt gctgatctct gcgcgcattt gcacgcgcag
    12181 cttggcatca aggttagaga gcggttcatc cattaaaaac acgcccgctt cgcgcacaat
    12241 cgcccgcccg agcgccacac gctggcgttg cccgccggaa agcgcgcccg gcttgcgttt
    12301 caggtactca cgcaggccga gaatttgcgc cgcccagttc acccg
//
LOCUS       DAJVUN010000122        11949 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.122, whole genome shotgun sequence.
ACCESSION   DAJVUN010000122 DAJVUN010000000
VERSION     DAJVUN010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11949
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.122"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..411)
                     /locus_tag="OQQ76_002848"
                     /pseudo
     CDS             complement(1..411)
                     /locus_tag="OQQ76_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
     gene            567..1607
                     /gene="gpr"
                     /locus_tag="OQQ76_002849"
     CDS             567..1607
                     /gene="gpr"
                     /locus_tag="OQQ76_002849"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HCS1969282.1"
                     /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES
                     QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM
                     WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG
                     KALYAGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG
                     CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ
                     RGQSMAQMALSWLLKNDRVTSVLIGVSRAEQLEENVQALNNLTFSTEELAQIDQHIAD
                     GELNLWQASSDK"
     gene            complement(1647..2141)
                     /locus_tag="OQQ76_002850"
     CDS             complement(1647..2141)
                     /locus_tag="OQQ76_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HCS1969283.1"
                     /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN
                     IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDA
                     TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT
                     RHNH"
     gene            2332..3216
                     /gene="yghA"
                     /locus_tag="OQQ76_002851"
     CDS             2332..3216
                     /gene="yghA"
                     /locus_tag="OQQ76_002851"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HCS1969284.1"
                     /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGS
                     GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA
                     VLLPGDLSDEKFAHSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN
                     VFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA
                     EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE
                     SSYVTAEVHGVCGGEHLG"
     gene            complement(3375..3800)
                     /gene="exbD"
                     /locus_tag="OQQ76_002852"
     CDS             complement(3375..3800)
                     /gene="exbD"
                     /locus_tag="OQQ76_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HCS1969285.1"
                     /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD
                     VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI
                     FFRADTTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK"
     gene            complement(3807..4541)
                     /gene="exbB"
                     /locus_tag="OQQ76_002853"
     CDS             complement(3807..4541)
                     /gene="exbB"
                     /locus_tag="OQQ76_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HCS1969286.1"
                     /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK
                     SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLFNEAQNELELSEGSD
                     DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA
                     QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL
                     LQSRDLDLEASAAAHPVRVAQKLRAG"
     gene            4793..5980
                     /gene="metC"
                     /locus_tag="OQQ76_002854"
     CDS             4793..5980
                     /gene="metC"
                     /locus_tag="OQQ76_002854"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCS1969287.1"
                     /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFESMEAKKH
                     ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGD
                     HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT
                     MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA
                     MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW
                     LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLF
                     SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLTRLHIGLEDVDDLIADLDAGFA
                     RIV"
     gene            6120..6779
                     /locus_tag="OQQ76_002855"
     CDS             6120..6779
                     /locus_tag="OQQ76_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1969288.1"
                     /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP
                     ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGW
                     LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS
                     GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGMLFVVIKKKYCN
                     A"
     gene            complement(6819..7718)
                     /gene="yqhC"
                     /locus_tag="OQQ76_002856"
     CDS             complement(6819..7718)
                     /gene="yqhC"
                     /locus_tag="OQQ76_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001407451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YqhC"
                     /protein_id="HCS1969289.1"
                     /translation="MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
                     VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLN
                     VDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
                     KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEAN
                     MNVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSR
                     EFKRYFGVTPGEDAARMRAMQGN"
     gene            7912..9075
                     /gene="yqhD"
                     /locus_tag="OQQ76_002857"
     CDS             7912..9075
                     /gene="yqhD"
                     /locus_tag="OQQ76_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HCS1969290.1"
                     /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKT
                     GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTK
                     FIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDK
                     QAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAE
                     GILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM
                     HGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFF
                     EQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR"
     gene            9180..10007
                     /gene="dkgA"
                     /locus_tag="OQQ76_002858"
     CDS             9180..10007
                     /gene="dkgA"
                     /locus_tag="OQQ76_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgA"
                     /protein_id="HCS1969291.1"
                     /translation="MANPTVIKLQDGNVMPQQGLGVWQASNEEVITAIQKALEVGYRS
                     IDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYID
                     LYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ
                     IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI
                     RWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG"
     gene            10207..11133
                     /locus_tag="OQQ76_002859"
     CDS             10207..11133
                     /locus_tag="OQQ76_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjP/YqhG family protein"
                     /protein_id="HCS1969292.1"
                     /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRQIYQNYKSDASTPY
                     FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD
                     ADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA
                     ALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM
                     QIERQFIYDNPICFGEESLFSRVDEIRVQEKTADSARIHVRFTLTNGNNEEQELVLQR
                     REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ"
     gene            11184..11441
                     /gene="yqhH"
                     /locus_tag="OQQ76_002860"
     CDS             11184..11441
                     /gene="yqhH"
                     /locus_tag="OQQ76_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YqhH"
                     /protein_id="HCS1969293.1"
                     /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE
                     QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE"
     gene            11521..11811
                     /locus_tag="OQQ76_002861"
     CDS             11521..11811
                     /locus_tag="OQQ76_002861"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969294.1"
                     /translation="MRRWHTCFFILLFCGFSGNVLCKESINEAIERLYQPLTSNDDIP
                     ITDEFSLDLRSNMSATPGKMTPWLNNNLLCRCVAVSLCRCVAVSMTLSFLQK"
BASE COUNT         3082 a         3033 c         2987 g         2847 t
ORIGIN      
        1 ccaacggaac ttaagccgtc aggtgccagg gcgatatacc ccgccttcgt cactcgccgt
       61 gccacatctt cgatatacgg attcagtcca cgattctcat gcaccaccac cacggctggc
      121 gttttgccgc tcatttgcgg gtttcaccag ataaccccgt acctcgccgt gaccatttgg
      181 cgaaggatac gtgatgtact cagcaacaat ctccgggtcg gtaaactcta cctgagtcgt
      241 cagcgcataa tttggcttga gcaaatcaaa caacgctaat gccgtcatcc cgcccaccgc
      301 atacttcgcc gcaaggttga ggaactcacg tttcgaaatt ttcccgtgag cgtaatagtc
      361 gtagtaatcc aacaactctt gtgggaaatc tttggcggtt aaacgcggca tcgttgcatt
      421 cctcaactgg tgttttttaa gcaaagcata agcgcgtgtt tttgcccagt ttttcgtcac
      481 tctgtgagcc agactacggg atacgcgctg gcgaatcgct aaactagaaa cattgtttcg
      541 aaattgaacg gtggaaagga gaggtcatgg tctggttagc gaatcccgaa cgttacgggc
      601 agatgcagta ccgctattgc ggaaaaagtg gtttacgcct gcccgcgtta tcgctcggtt
      661 tatggcacaa tttcggtcac gttaacgcgc tggaatcaca gcgtgcaatc ctgcgtaaag
      721 cgtttgattt aggcattacg cactttgatt tagccaacaa ttacgggccg cctccaggaa
      781 gcgcagaaga gaactttggt cgcctgctgc gggaggattt tgccgcttat cgcgatgaac
      841 tgattatatc taccaaggct ggctacgata tgtggcccgg cccttacggc tctggcggtt
      901 cacgtaaata cctgctcgcc agcctcgacc aaagcctgaa gcgtatgggg cttgagtatg
      961 tcgatatctt ttactctcat cgcgtcgatg aaaatacgcc gatggaagaa accgcctctg
     1021 cgctggctca tgcggtacaa agcggtaagg cgctgtatgc cgggatctcc tcttactcgc
     1081 cagagcggac gcaaaaaatg gtcgagttgc tgcacgagtg gaaaattccg cttttaattc
     1141 atcaaccttc gtacaattta ctgaaccgct gggtggataa aagcggcctg ctggataccc
     1201 tgcaaaataa cggcgtgggc tgtattgcct ttactcctct ggctcaggga ttgctgaccg
     1261 gaaaatatct caacggcatt ccgcaagatt cacggatgca tcgtgaaggg aataaagttc
     1321 gtggtctgac gccgaaaatg cttaccgaag ccaacctcaa cagcctgcgc ttattgaatg
     1381 aaatggcaca gcagcgtgga caatcaatgg cgcaaatggc gttaagctgg ttgctgaaaa
     1441 atgatcgcgt gacgtcggta ttgattggtg tcagccgcgc ggagcaacta gaggagaacg
     1501 tgcaggcgct gaataatctg acatttagca ccgaggagct ggcgcagatt gatcagcata
     1561 tcgccgatgg cgagctgaat ctgtggcagg cgtcttccga taaatgacct gttaataacg
     1621 ggcgcgcgaa ccgcgcccga atcagatcag tgattatgac gagtcagtcg gtcaagatag
     1681 cccatcacaa atgcagagag cacaaacgtc agatggataa tgacgtacca catcagtttg
     1741 ttatccggga catttttcgc atccataaag acgcgcagta agtgaatgga agaaattgcc
     1801 acaatcgacg ctgctacttt gtttttcagc gacgttgcgt ccattttccc cagccagttc
     1861 agcttctctt tgttctcgga gatatccagc tgcgagacga aattctcata accggaaaac
     1921 atcaccatca ccagcaaacc gccaaccagc gtcatatcca ccagcgacag caacacgagg
     1981 atcaaatctg attccgccat cgagaagata ttcggcagta cgtgaataat ctcctggaag
     2041 aacttcagcg ccagggcaac taacgccagc gaaaggccaa agtacacggg ggcaagcagc
     2101 cagcgagaag catacattgc attttcaaga aaacgttcca tacattcctg tcgtgtagtt
     2161 aaaacgggca acagtatatc gcaattgagt aaacagcacg caacagcaaa tcaacatata
     2221 cgttaaacct ttgtcgcata attctgaggt ttagggatct tcctggttcc cttatcaacg
     2281 catcgagagc gtctaccctt aaaagacgtt gaacctgaag ggagaaaaac aatgtctcat
     2341 ttaaaagacc cgactacgca gtattacact ggtgaatatc ccaaacagaa acaaccgacg
     2401 ccaggcatcc aggcgaagat gacaccggta ccggattgcg gcgagaaaac ctatgttggt
     2461 agcggtcgcc tgaaagatcg taaagcactg gtgacagggg gcgattccgg aataggtcgc
     2521 gctgccgcca tcgcttacgc gcgtgaaggg gctgacgtgg cgatcagtta tcttcccgtg
     2581 gaagaagaag acgctcagga tgtgaaaaag atcattgaag aatgcggacg caaagccgtt
     2641 ctgctgccag gcgatttaag cgatgagaaa ttcgcccatt cgctggttca cgaagcgcac
     2701 aaggcgttag gcgggctgga tattatggcg ctggtcgccg ggaaacaggt tgccattccg
     2761 gatattgcag acctcaccag cgaacagttt caaaagacct ttgccattaa cgttttcgcg
     2821 ctgttctggc taacccagga agcgatcccc ctgctaccga aaggtgcaag tatcatcacc
     2881 acttcgtcaa tccaggcata ccagccaagt ccgcatttac tggactatgc ggctacgaag
     2941 gcggcgattc tgaactacag ccgtggcctg gcaaaacagg tcgcggagaa aggtattcgg
     3001 gtgaatattg tcgcgccagg ccctatctgg acggcactgc aaatttccgg cggacaaacg
     3061 caggataaga tcccgcagtt tggtcagcaa acgccgatga agcgtgcggg gcaaccggcg
     3121 gaactggccc ctgtatatgt ttatctggca agtcaggagt cgagctacgt caccgcagaa
     3181 gtgcacggtg tgtgcggcgg cgagcattta ggttaaaaaa atgcccggtt gtgaaaagca
     3241 accgggcatc attgtgaatt cactcttacc tgatgtggcg aaaacgcctt atccgcctac
     3301 aaacgcatga agattcaaca tgttgcaata gattttgtag gcctgatgag cgtagcgcat
     3361 caggcaattc tactttactt cgctttggcg gtttcttcgc cgaccagacc tatcttcagg
     3421 taacccgcct gatgcagcgt atccattacc ttcatcaacg tctcgtaatc gacggttgta
     3481 tccgctcgga agaagatggt ggtgtctttc ttgccttcgg ttaacgcatt caacgccgta
     3541 atcattgttt catcggtgac cggatcgtta ccgataaaca tcgagttgtc tgccttcacc
     3601 gacagataaa ccggtttttc cgggcgcggc tgcggcgtgc tggtagaagc aggcaagttc
     3661 accttcacat ctaccgtcgc taacggtgcc gccaccataa agataatcag cagaaccaac
     3721 atcacgtcga taaacggcgt cacgttgata tcatgcattt cgccgttatc gtcgaggttt
     3781 tcgttaagat gcattgccat cggatattat cctgcgcgta atttttgtgc gacacgaacc
     3841 ggatgcgcag cggcgctggc ttccagatcc aggtcacggc tttgcagcaa caatacctgc
     3901 gctgcaacat cacccagcat cgctttaaag ccgccaatct ggcgtgcaaa tacgttatag
     3961 ataacgaccg caggaatcgc tgccacgagg ccgattgccg ttgctaacag agcttctgcg
     4021 atacccggcg caacgactgc caggttagtg gtctgcgttt gcgcgatacc aataaagctg
     4081 ttcatgatgc cccagaccgt accaaacaga ccaacgaacg gagaaatcgc gccgatggtt
     4141 gccagatagc cgttaccgcg gcccatttga cgacccactg cggcgacccg acgctccaga
     4201 cggaagctgg tacgttcttt aataccttcg ttatcgtcgc tgccttctga cagttccagc
     4261 tcattctgcg cttcattgaa caaatgcagg cttaagcttt tgctaccaaa atcagcggcg
     4321 atatcgttgg cctggtttaa ggaacgcgct tcagccagca gttgctgctc gcgctttagg
     4381 cgacgcttct gattgaagaa ctctacgctc ttactgaaga agattgccca ggtgactacg
     4441 gaggccaaaa taagcccaat catcacgcac ttaacgacaa tatcggcgtg ctgatacata
     4501 ccccagacgg aaaggtccgt ctgcattaaa ttattaccca ctgtgtatct ccaggacgca
     4561 agtcacaaaa tctgcgcata ataatatcaa aacgacgtcg aattgatagt cgttctcatt
     4621 actatttgca tactgccgta cctttgcttt cttttccttg cgtttacgca gtaaaaaagt
     4681 caccagcacg ccatttgcga aaattttctg ctttatgcca attcttcagg atgcgcccgc
     4741 gaatattcat gctagtttag acatccagac gtataaaaac aggaatcccg acatggcgga
     4801 caaaaagctt gatactcaac tggtgaatgc aggacgcagc aaaaaataca ctcttggcgc
     4861 ggtaaatagc gtgattcagc gcgcttcttc gctggtattt gagagtatgg aagccaaaaa
     4921 gcacgcgacg cgcaatcgcg ccaatggcga gttgttctat ggacggcgcg gaacgttaac
     4981 ccatttttcc ttacaacaag cgatgtgtga actggaaggt ggcgcaggct gcgcgctatt
     5041 tccctgcggg gcggcagcgg ttgctaattc gattcttgct tttgtcgaac agggcgatca
     5101 tgtgttgatg accaacactg cctatgaacc gagtcaggat ttctgtagca aaatcctcag
     5161 caaactgggc gtaacgacat cgtggtttga tccgctgatt ggtgccgata tcgttaagca
     5221 tctgcagcca aacactaaaa tcgtgtttct ggaatcgcca ggctccatca ccatggaagt
     5281 ccacgacgtt ccggcgattg ttgccgccgt acgcagtgtg gtgccggatg ccatcattat
     5341 gatcgacaac acctgggcag ccggtgtgct gtttaaggcg ctggattttg gcatcgatgt
     5401 ttctattcaa gccgccacca aatatctggt tgggcattca gatgcgatga ttggcactgc
     5461 cgtgtgcaat gcccgttgct gggagcagct acgggaaaac gcctatctga tgggccagat
     5521 ggtcgatgcc gataccgcct atataaccag ccgtggcctg cgcacattag gtgtgcgttt
     5581 gcgtcaacat catgaaagca gtctgaaagt ggctgaatgg ctggcagaac atccgcaagt
     5641 agcgcgagtt aaccaccctg ctctgcctgg cagtaaagga cacgaattct ggaaacgaga
     5701 ctttacaggt agcagcgggc tgttttcctt tgtgcttaag aaaaaactca gtaatgaaga
     5761 gctggcgaac tatctggata acttcagttt attcagcatg gcctactcgt ggggcgggta
     5821 tgaatcgttg atcctggcga atcaaccaga acatatcgcc gccattcgcc cacaaggcga
     5881 gatcgatttt agcgggacct tgactcgcct gcatattggt ctggaagatg tcgacgatct
     5941 gattgccgat ctggacgccg gttttgcgcg aattgtataa cattgccact tttggacaat
     6001 tttgcagaca tttaattgtg aaaagtctta aattgttgcg tccgggatca aggcgtcccg
     6061 gacgaatcag gagtacaata ggcagataaa ggcttaaacg ctgttccaca ggaaagtcca
     6121 tggctgttat tcaagatatc atcgctgcgc tctggcaaca cgactttgcc gcgctggcgg
     6181 atcctcatat tgttagcgtt gtttactttg tcatgtttgc cacgctgttt ttagaaaacg
     6241 gcctgctgcc cgcctcattt ttgccaggcg acagcttgtt gatactggca ggcgcattga
     6301 ttgcccaggg ggttatggat tttctgccta cgattgcgat tctgaccgcc gcagcaagtc
     6361 tgggctgctg gctaagttat attcaggggc gctggttagg gaataccaaa acggtgaaag
     6421 gctggctggc acagcttcct gctaaatatc accagcgcgc cacctgcatg tttgaccgcc
     6481 acggtctgct ggcgctgctg gctggacgtt ttcttgcatt tgtccgtacg ctgctgccaa
     6541 ccatggcggg aatttccggt ctgccaaacc gccgcttcca gtttttcaac tggttaagtg
     6601 gattgctgtg ggtcagcgtg gtaaccagtt ttggctatgc cttaagtatg attccgttcg
     6661 ttaaacgcca tgaagatcag gtaatgacgt tcctgatgat cctgccaatt gccttgttaa
     6721 ccgctggctt gttaggcatg ctgtttgtgg tgattaaaaa aaaatactgt aacgcctgac
     6781 gattttcccc gttcccggct gctgtaccgg gaacgtattt aattcccctg catcgcccgc
     6841 attcttgccg catcttcccc cggcgtcaca ccgaagtaac gtttaaactc acggctaaat
     6901 tgcgatgcgc tttcatagcc gacgcgcatc gctgctgcgc tggccttcat gccgtcatgg
     6961 atgatcatca tccgcgcctt atgcagacgg taattcttca aatactgcaa cggcgaggtg
     7021 ctggtgacag acttaaaatt atggtggaac gccgatacgt tcatgttggc ttctgccgcc
     7081 agttgctcga cgctcaggtt ttcggtgtat ttattctcaa tccgtttcag cacgcggcta
     7141 atcagactga agtgagtctg gcgactgacc agcgccagta acgcgccgcc gcaaggtccg
     7201 gtcagcacgt agtacagaat ttcgcggatg atctgtttgc cgagaatacg cgcatccagt
     7261 ggtcgctcca tcacgtcgag taaccgctcc gccgcgcata aaatctcttc tgataacgtg
     7321 gcggagttaa tcccgctggc tgccatcgac ggctggaaat gctcatcttc gccaatgtcc
     7381 atcaacagtt cctgtaactg caaaatatcg acattgagac gcaaccctgc cagcggcacc
     7441 tctgacgtgg cataggtttc gcactcaaac ggcaacggca ccgtcagcag caggtattca
     7501 ttggcatcat aacgaaacac gcgttcattg atataaccga ttttatgccc ggaaaagaga
     7561 attatgatgc caggctcgta catcaccggt gtacgtgcga aaggcgtctc gccatacaac
     7621 aaacgcacat cgggcaacag ttctgacaaa ctattttctt tatttttcag tttattaact
     7681 ttatccgcca gcaagcggca aatctcttca cgtttcatat cgcgtaattt cttaggaata
     7741 atgcggcaat ttgattgtgc gcaattttgt agcatttctc cagcactctg gagaaatagg
     7801 caagacattg gcagaaatga gcattgagag ccagggcgct ggcgatcaca atgaaaaaca
     7861 tcaggcagat cgttctctgc cctcatattg gcccagcaaa gggagcaagt aatgaacaac
     7921 tttaatctgc acaccccaac ccgcattctg tttggtaaag gcgcaatcgc tggtttacgc
     7981 gaacaaattc ctcacgatgc tcgcgtattg attacctacg gtggcggcag cgtgaaaaaa
     8041 accggcgttc tcgatcaagt tctggatgcc ctgaaaggca tggacgtgct ggaatttggc
     8101 ggtattgagc caaacccggc ttatgaaacg ctgatgaacg ccgtgaaact ggttcgcgaa
     8161 cagaaagtga ctttcctgct ggcggttggc ggcggttctg tactggacgg caccaaattt
     8221 atcgccgcag cggctaacta tccggaaaat atcgatccgt ggcacattct gcaaacgggc
     8281 ggtaaagaga ttaaaagcgc catcccgatg ggctgtgtgc tgacgctgcc agcaaccggt
     8341 tcagaatcca acgcaggcgc ggtgatctcc cgtaaaacca ctggcgacaa gcaggcgttc
     8401 cattctgccc atgttcagcc ggtatttgcc gtgctcgatc cggtttatac ctacaccctg
     8461 ccgccgcgtc aggtggctaa cggcgtagtg gacgcctttg tacacaccgt ggaacagtat
     8521 gttaccaaac cggttgatgc caaaattcag gaccgtttcg cagaaggcat tttgctgacg
     8581 ctgatcgaag atggtccgaa agccctgaaa gagccagaaa actacgatgt gcgcgccaac
     8641 gtcatgtggg cggcgacgca ggcgctgaac ggtttgattg gcgctggcgt accgcaggac
     8701 tgggcaacgc atatgctggg ccacgaactg actgcgatgc acggtctgga tcacgcgcaa
     8761 acactggcta tcgtcctgcc tgcactgtgg aatgaaaaac gcgataccaa gcgcgctaag
     8821 ctgctgcaat atgctgaacg cgtctggaac atcactgaag gttccgacga tgagcgtatt
     8881 gacgccgcga ttgccgcaac ccgcaatttc tttgagcaat taggcgtgcc gacccacctc
     8941 tccgactacg gtctggatgg cagctccatc ccggctttgc tgaaaaaact ggaagagcac
     9001 ggcatgaccc aactgggcga aaatcatgac attacgttgg atgtcagccg ccgtatatac
     9061 gaagccgccc gctaagcttt ttacgcctca aactttcgtt ttcgggcatt tcgtccagac
     9121 ttaagttcac aacacctcac cggagcctgc tccggtgagt tcatataaag gaggaacgta
     9181 tggctaatcc aaccgttatt aagctacagg atggcaatgt catgccccag cagggactgg
     9241 gcgtctggca agcaagtaat gaggaagtaa tcaccgccat tcaaaaagcg ttagaagtgg
     9301 gttatcgctc gattgatacc gccgcggcct acaagaacga agaaggtgtc ggcaaagccc
     9361 tgaaaaatgc ctcagtcaac agagaagaac tgttcatcac cactaagctg tggaacgacg
     9421 accacaagcg cccccgcgaa gccctgctcg acagcctgaa aaaactccag cttgattata
     9481 tcgacctcta cttaatgcac tggcccgttc ccgctatcga ccattatgtc gaagcatgga
     9541 aaggcatgat cgaattgcaa aaagagggat taatcaaaag catcggcgtg tgcaacttcc
     9601 agatccatca cctgcaacgc ctgattgatg aaactggcgt gacgcctgtg ataaaccaga
     9661 tcgaacttca tccgctgatg caacaacgcc agctacacgc ctggaacgcg acacacaaaa
     9721 tccagaccga atcctggagc ccattagcgc aaggagggaa aggcgttttc gatcagaaag
     9781 tcattcgcga tctggcagat aaatacggca aaaccccggc gcagattgtt atccgctggc
     9841 atctggatag cggcctggtg gtgatcccga aatcggtcac accttcacgt attgccgaaa
     9901 actttgatgt ctgggatttc cgtctcgaca aagacgaact cggcgaaatt gcaaaactcg
     9961 atcagggcaa gcgtctcggt cccgatcctg accagttcgg cggctaacat gcaaattctc
    10021 ccggtggcgg taatgttccg ctaccggact tttcagaaat catttattcc cctcgcgtcc
    10081 cgcccgttgt tactcttcct tgttcaggaa tgccaaatat aaggacatca tcatgcagag
    10141 ccggaagctc ttaaaagaac aactcatcta tatccgggat aaacgcaacg gagaggtgaa
    10201 aaacagatga aaataatact tctgttttta gcagccttgg caagttttac cgtacacgcg
    10261 cagcctcctt cacagaccgt agaacaaaca gtccggcaga tttatcagaa ctataaatca
    10321 gatgccagta cgccttattt cggtgaaacc ggagagcggg cgataacttc agcgcgtatt
    10381 caacaggcgc ttaccctgaa cgacaatctt acgctgccgg gcaatattgg ctggctggat
    10441 tatgatccgg tttgtgattg tcaggatttt ggcgatctgg tgctagaaag cgttgcgata
    10501 acccaaactg acgccgatca tgccgatgcc gttgtgcgct ttcgtatctt taaagatgat
    10561 aaagaaaaga ccacgcagac actgaaaatg gtggcggaaa atggtcgttg ggtcattgac
    10621 gatattgtca gcaatcatgg cagcgtctta caagcagtta atagcgagaa tgaaaaaacg
    10681 ctggccgctt tagcttcgtt gcaaaaagaa cagccggaag cctttgttgc cgaactcttt
    10741 gaacatattg ctgattatag ctggccgtgg acgtgggtgg tttccgactc ttaccgccag
    10801 gcggttaatg ccttctataa aaccaccttc aagacggcca ataatcccga tgaagatatg
    10861 caaatagaac ggcaatttat ttacgacaat ccgatctgtt ttggcgaaga gtcgctattt
    10921 tcacgcgttg atgaaattcg agtccaggag aaaaccgccg attccgcccg cattcatgtt
    10981 cgttttacgc tgaccaatgg caacaacgaa gagcaagaac tggttttaca gcggcgcgaa
    11041 ggcaagtggg aaatcgctga ttttatccgc ccgaacagcg gcagcctact taagcagatt
    11101 gaggcaaaaa ctgccgccag attaaagcaa tgagctgaat taaataacaa ttagccggaa
    11161 caataaataa aagggaacac tatatgaaaa cgattttcac cgtgggagct gttgttctgg
    11221 caacctgctt gctcagtggc tgcgtcaatg agcaaaaggt caatcagctg gcgagcaatg
    11281 tgcaaacatt aaatgccaaa atcgcccggc ttgagcagga tatgaaagca ctacgcccac
    11341 aaatctatgc tgccaaatcc gaagctaaca gagccaatac gcgtcttgat gcacaggact
    11401 attttgattg cctgcgctgc ttgcgtatgt acgcagaatg ataaaaaaat ccccggcagt
    11461 atgtcagttg ccgggttata ggctgtttgc taaaaaaaag acaaacataa ggacatgatt
    11521 atgcgacgct ggcacacctg tttttttatt ctgctgttct gtggcttcag cggaaacgtg
    11581 ttgtgcaaag aatcgattaa tgaagcgata gaacgtttgt accaaccatt gaccagtaat
    11641 gacgatatac caataaccga tgaattcagt ctcgatttgc gaagtaatat gagcgctact
    11701 cctggcaaaa tgacaccctg gctgaataat aatcttttgt gtcgctgtgt cgctgtgtcg
    11761 ctgtgtcgct gtgtcgctgt gtcgatgacg ctttcgtttc tgcagaaata atccaaagca
    11821 cacacctgaa tggcggccga acgcatgtac tgttgcagct ggttatcaaa caaaatcgca
    11881 cagatatcca ccggttactg gggctaatgc tggttcgtga aaatgataat catcgttggc
    11941 taatagaag
//
LOCUS       DAJVUN010000123        11823 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.123, whole genome shotgun sequence.
ACCESSION   DAJVUN010000123 DAJVUN010000000
VERSION     DAJVUN010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11823
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.123"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..842
                     /locus_tag="OQQ76_002862"
     CDS             <1..842
                     /locus_tag="OQQ76_002862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1969295.1"
                     /translation="NYRNELLHGETLYLDNPRSNKKGRIVRTVDNYIALLCSLLRFAY
                     QSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGE
                     LAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTG
                     HHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGARWNAAVKRAGIR
                     RRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNA
                     RLS"
     gene            894..1829
                     /gene="ttcA"
                     /locus_tag="OQQ76_002863"
     CDS             894..1829
                     /gene="ttcA"
                     /locus_tag="OQQ76_002863"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HCS1969296.1"
                     /translation="MQENQQITKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMV
                     CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGVEYKI
                     VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL
                     NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN
                     LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD
                     LAFDREEIPLQPAGWQPEEEENQLDELRLNVVEVK"
     gene            complement(1958..3331)
                     /gene="dbpA"
                     /locus_tag="OQQ76_002864"
     CDS             complement(1958..3331)
                     /gene="dbpA"
                     /locus_tag="OQQ76_002864"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HCS1969297.1"
                     /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAATLPAILAGKDVR
                     VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK
                     ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD
                     MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ
                     QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE
                     QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR
                     AGNRGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLEAEMATLCIDGGKK
                     AKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
                     CRVRLLK"
     gene            complement(3809..4792)
                     /gene="zntB"
                     /locus_tag="OQQ76_002865"
     CDS             complement(3809..4792)
                     /gene="zntB"
                     /locus_tag="OQQ76_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HCS1969298.1"
                     /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH
                     LNYVYHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPD
                     QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE
                     FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW
                     MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV
                     FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL"
     gene            5047..6279
                     /gene="dgcM"
                     /locus_tag="OQQ76_002866"
     CDS             5047..6279
                     /gene="dgcM"
                     /locus_tag="OQQ76_002866"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcM"
                     /protein_id="HCS1969299.1"
                     /translation="MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQ
                     LRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVI
                     IFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
                     LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQ
                     TYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQM
                     QHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGE
                     EFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDVLFKRV
                     DDALYRAKNDGRNRVLAA"
     gene            complement(6300..6863)
                     /gene="smrA"
                     /locus_tag="OQQ76_002867"
     CDS             complement(6300..6863)
                     /gene="smrA"
                     /locus_tag="OQQ76_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA endonuclease SmrA"
                     /protein_id="HCS1969300.1"
                     /translation="MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQL
                     DNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMV
                     FSFIHQALADGLRNVLIIHGKGREDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG
                     SGACYVALRKTAQAKQENWERHAKRSR"
     gene            complement(7193..8101)
                     /locus_tag="OQQ76_002868"
     CDS             complement(7193..8101)
                     /locus_tag="OQQ76_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1969301.1"
                     /translation="MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELE
                     EGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMG
                     ASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHE
                     FTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQT
                     PQVGVVCETFSACISLVAKSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQ
                     RRDSRQTPLTPSLITQFRRECGYLQS"
     gene            8277..9430
                     /locus_tag="OQQ76_002869"
                     /pseudo
     CDS             8277..9430
                     /locus_tag="OQQ76_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415854.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
     gene            9430..10875
                     /gene="abgB"
                     /locus_tag="OQQ76_002870"
     CDS             9430..10875
                     /gene="abgB"
                     /locus_tag="OQQ76_002870"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate hydrolase subunit AbgB"
                     /protein_id="HCS1969302.1"
                     /translation="MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLA
                     SALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTP
                     GENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV
                     FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMT
                     TGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAK
                     IAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQ
                     ATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDV
                     SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGL
                     LQECQQEHQQVTDTQPYHCPIPKNVTPSSLK"
     gene            10912..>11823
                     /locus_tag="OQQ76_002871"
     CDS             10912..>11823
                     /locus_tag="OQQ76_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family transporter"
                     /protein_id="HCS1969303.1"
                     /translation="MSMSSIPSSSQSGKLYGWVERIGNKVPHPFLLFIYLIIVLMVTT
                     AILSAFGVSAKNPTDGTPVVVKNLLSVEGLHWFLPNVIKNFSGFAPLGAILALVLGAG
                     LAERVGLLPALMVKMASHVNVRYASYMVLFIAFFSHISSDAALVIMPPMGALIFLAVG
                     RHPVAGLLAAIAGVGCGFTANLLIVTTDVLLSGIRTEAAAAFNPQMHVSVIDNWYFMA
                     SSVVVLTIVGGLITDKIIEPRLGQWQGNSDEKLQTLTESQRFGLRIAGVVSLLFIAAI
                     ALMVIPENGILRDPINHTVMPSPFIKGI"
BASE COUNT         3056 a         2980 c         2919 g         2868 t
ORIGIN      
        1 taaactaccg gaatgaactg ctgcatggag aaacgcttta cctagataat ccaagatcca
       61 acaaaaaagg aagaatcgtg cgcacagttg ataactatat cgccctgctc tgttcgttgt
      121 tacgttttgc gtatcagtcg ggatttatat caaccaaacc atttgaagga gtaaaaaaat
      181 tacagcgaaa cagaataaaa cctgacccgt tatctaaaac agaattcaat gcattaatgg
      241 aaagtgaaaa aggacagagc caaaacttgt ggaaatttgc cgtttactcc gggcttcgtc
      301 acggggaact ggcagctctg gcgtgggagg atgtggattt cgagaaggga attgtgaatg
      361 tcagaagaaa cctgacgata cttgatatgt tcggtccccc aaaaacaaat gccgggatcc
      421 ggacggtaac attactgcag ccggctcttg aagcactgaa ggagcaatac aaactgaccg
      481 ggcatcatcg caaaagcgaa atcacttttt atcatcggga gtacggcaga actgaaaagc
      541 aaaaactgca ttttgttttc atgcccaggg tgtgtaacga aaaacagaaa ccttattact
      601 cggtaagcag tttgggtgca agatggaatg cagcagtaaa acgtgctggt attcgccgcc
      661 gtaatccgta ccatacgcga catacttttg cctgctggct gttgacggca ggagcgaacc
      721 cggcatttat agccagccag atggggcatg aaactgcgca aatggtgtat gaaatttacg
      781 gtatgtggat tgatgacatg aacgacgaac agatagccat gttgaatgcg cggttatcgt
      841 agttgcaaag tttgccccca atttgcccca tttagtacca gagaactgaa ataatgcaag
      901 aaaatcaaca aattacaaag aaagaacaat acaacctgaa caaattacaa aaacgtctac
      961 gtcgtaacgt gggcgaagcc attgctgact tcaatatgat tgaagaaggc gatcgcatca
     1021 tggtttgcct ctcagggggt aaagacagct ataccatgct ggagattctg cgcaatttgc
     1081 agcaaagcgc gccaatcaat ttttcgctgg tggctgttaa cctcgatcaa aagcaaccgg
     1141 gcttcccaga acacgttctg cccgtgtatc ttgaaaagct gggcgttgag tacaagattg
     1201 tcgaagagaa cacttacggt atcgtgaaag agaagattcc agagggcaaa accacttgct
     1261 cactgtgttc tcgccttcgt cgcggtatcc tttatcgtac cgcaacggaa ctgggggcga
     1321 cgaagatcgc gctgggtcac catcgtgacg atatcctgca gacgttgttc ttaaatatgt
     1381 tctacggcgg caagatgaaa ggtatgcctc cgaaactgat gagcgatgat ggcaaacata
     1441 tcgttattcg tccgctggcc tactgccgcg agaaagatat tcagcgattt gccgatgcaa
     1501 aagcgttccc gattattccg tgcaacctgt gcggttcaca gcctaacctg caacgtcagg
     1561 tgattgctga catgttgcgt gactgggata aacgttatcc agggcgtatc gagacgatgt
     1621 tcagcgcgat gcagaatgtg gtgccgtcgc atctgtgcga taccaacctg ttcgatttca
     1681 aaggcatcac ccacggttct gaagtggtta acgggggtga tctggcgttt gatcgcgaag
     1741 agatcccact acaaccggcg ggctggcagc cagaagaaga ggaaaatcag ttggatgagt
     1801 tacggctgaa tgtggttgaa gtgaaataac caggatagcg cccgatgcgc aagcgtatcg
     1861 ggctactctt atggaggccg gataagacgc ggccaacgtc gcatccggca atgccgaaga
     1921 agatgtttac tcttgcaccc ggcaattcaa catttcatta ttttaataac cgcacccggc
     1981 acgtttttcc tttaatcttc ccgccctgta actgtttcca tgctttatga gcaacagcct
     2041 gacggaccgc gacatagaca tgcgccggat gcacggcgat tttgccaata tctgcgccat
     2101 caagcccgat atctcctgtc agtgcaccta atacatcacc cgggcgcatt ttggcttttt
     2161 tcccgccatc gatacacaac gttgccattt ctgcttccag cggcacaatg gaactattag
     2221 ctggcggcgt ttgccagtta agttttatct gcaacatgtc agaaatgata ttggcccgct
     2281 gtgcttcttc cggagcacag aaactgatcg ccagccccct atttcctgca cgagctgtac
     2341 ggccgatgcg atgtacatga acttcagggt cccacgccag ctcaaagttc accaccagct
     2401 caagcgattt aatatccaga ccacgcgcag caacatcagt cgcaaccagt acacgggcgc
     2461 taccgttagc aaaacgtacc agggtctgat cgcgatcgcg ttgctccaaa tcgccgtgta
     2521 atgacaatgc actttgccct acttcattca gcgcgtcgca gacagcctgg caatcttttt
     2581 tggtattgca aaacaccacg caagaggatg gctgatgcaa gcttaataac cgttgcaaca
     2641 gaggaatttt gcctttgctg gatgtctcat aaaattgttg ttcaatgggt ggcaaagcat
     2701 ctgttgagtc aatttcaatc gccaaaggat cgcgttgcac tcgtccgctg attacggcga
     2761 tggcttccgg ccaggttgcc gaaaacagaa gcgtctgtcg agatgcaggc gcaaaacgga
     2821 tgacatcatc aatggcatcg ctaaatccca tatccagcat gcggtcggcc tcatccatca
     2881 ccaaagtatt cagcgcatcc agtgataccg tgcctttttg caagtgatcc agcaaacgac
     2941 ccggcgttgc cacgataata tgcggcgcat gttgcaacga atcacgctgc ataccgaacg
     3001 gttgaccacc gcacaacgtc aaaattttgg tatttggcag aaaacgcgcc agccgacgca
     3061 attcacctgc cacctgatcc gccagttcac gcgtaggaca cagcactaaa gcctgggttt
     3121 gaaatagcga cgcatcaatt tgctgtaaca agccgaggcc aaaagccgcc gttttgccgc
     3181 tgccggtttt cgcctgcacg cgaacatctt ttccggcaag gatcgccgga agcgtggcgg
     3241 cctgcaccgg cgtcatagtt aaataaccca actcattaag gttcgtgagt tgggcgggag
     3301 gcaaaacatt cagggtagaa aaagcggtca caatctattc tcgtggtcat cgacgcaaag
     3361 ttagcaggcg cgtatcctcg cagatctacg ctcacgatgc gacaatttaa tcggttcttc
     3421 atcgggtggt gggtcaggca tgggttgcgg gcgagggatc ggatcgggca ctggaacagg
     3481 atcgccagga atcggttcag ggacaggaat ttgcaaataa ataagtgtcg tcatatttcc
     3541 ctccggtcat tgggtggact cttaaagggt agacgctgat aaataacagg caaaaaaaag
     3601 ccgactcatc aaagtcggcg tcgtacgaat caattgtgct atgcagtaat tcaaaaaagg
     3661 aagtaagaca atatggagcg caacgcccat cgcttgacgt tgcattcacc tgcaagggag
     3721 atattgccct gaatgggtag agagtttatt gacttcgctc aaactttgcg gcgtttttgt
     3781 atacagacag ccggaaaaat tgcttttgtt acaaccattt actacgatgc aaccataaag
     3841 caacaccacc aataagaaca actaacagaa tacaaaaaat tgaaaatccg aattgccacc
     3901 cgccgccagg gatcccacca aggttgacgc caaataaccc tgtcagaaag gtactgggta
     3961 aaaagaccat tgccatcaat gacattgtat aggtacgacg agctaaattt tcctgcatca
     4021 cctgagcgat ttcatccgcc atcacgccag tccgtgctat acaggcgtcg atttcgtcaa
     4081 gaccgcgccc aaggcgatcg gcaatatcct gcatccgacg gcgttggtca tcgctcatcc
     4141 acggcaaacg ttcactggca agacgagcat aaacatcacg ttgcggtgcc atatagcgac
     4201 gcatcacgat taattgtttg cgcagcagag ccaggaatcc acgcggtgga atttgctgat
     4261 caaggagatt atcttcaagg tcgataattt tatcgtgcag ctgctcgata aattcgctgg
     4321 aatgatcggt caacgcatcg cacacatcca ccagccaccc tccgcaatcg gtcggacccg
     4381 tgccctcttc cagatcgctc accacatcgt ccagcgccag cactttgcgt tgtcgggtcg
     4441 aaacaattaa ccgcccgtcc atatatacac gcatggcgac cagttgatcg gggcgttcat
     4501 cggtgctgcc gtttatacag cgcaatgtaa tcagcgtgcc ttcaccgaga cggctgactc
     4561 ggggccgtgt gctctcgcct gccagcgcat cacgtacgtt attgggaagc agcggtgttg
     4621 tcgccagcca ttgggcgcta tcatggtata cataattaag gtggagccag cagggatgcg
     4681 cttcatcaat cacatctgta ttttccagcg gtttaacgcc gcctctacca tccagcatcc
     4741 aggcaaatac tgcatccggg acattaacgt ccgatccctt aatcgcttcc acagtgcctc
     4801 catcatcaac gcattatttt gtagtctagc cttctggccc tgttacgcaa catctcatca
     4861 ccctattacc ctgaaatgat taataaaatt ctgtctaaat tgaatacaaa aagcaaaatg
     4921 cttttccgta tacaaaccgt gtgaagtgtt aaatagcgtc tatcattatc agaattatct
     4981 gatcatatga cgtggctttt ttgcgatcgg atagcaacaa aaattgataa aaataacggg
     5041 atctcaatga ttacgcacaa cttcaatacc ctggacttac tcaccagtcc tgtctggatt
     5101 gtttcgccct ttgaggaaca gttaatttat gccaatagcg cggcgcgact gttgatgcaa
     5161 gacctcacgt ttagtcagct acgaaccgga ccctattccg tctcctcaca aaaagaactg
     5221 ccgaaatacc tctccgatct gcaaaaccaa cacgatatta tcgaaatcct cactgttcag
     5281 cgtaaagaag aggaaacagc attaagctgt cggcttgttt tgcgagagct gacagaaaca
     5341 gaaccggtga ttattttcga aggtatcgaa gcgccggcaa cgctgggttt aaaagccagt
     5401 cgctcggcaa attatcagcg caaaaaacaa ggtttttatg cgcgcttttt tctgactaac
     5461 tctgcaccaa tgttgttgat tgacccctca cgagatggcc aaatcgtcga tgctaacctc
     5521 gccgcgctca atttctacgg ttataaccat gaaacgatgt gccagaaaca tacctgggaa
     5581 attaatatgc tcgggcgtcg cgtcatgcct atcatgcatg aaatttcgca tttacccggc
     5641 ggtcataaac ctttgaattt tgttcataaa ctggcggatg gatctactcg tcatgtgcag
     5701 acctatgccg ggccgattga aatttatggc gacaagctca tgttatgtat tgtgcatgat
     5761 attactgagc aaaaacggct ggaggagcag ctggaacatg ctgctcacca tgacgcgatg
     5821 accggattac tgaatcggcg acagttttat cacattacgg aaccaggcca aatgcagcac
     5881 ctcgccatcg cccaggatta cagcttgttg ctcatcgaca ccgatcgttt taaacacatt
     5941 aacgatctct atgggcattc taaaggtgat gaggtgttat gcgccctcgc ccgcaccctc
     6001 gaaagttgcg ctcgcaaagg cgatttggtg tttcgttggg gaggcgaaga gtttgtctta
     6061 ttgctaccaa gaaccccact ggatactgcg ctttcgctgg ctgaaactat ccgtgtaagc
     6121 gtggccaaag tgagtatttc gggcttacca cgttttaccg tcagcattgg tgtggcgcat
     6181 cacgaaggaa atgaaagcat cgatgtactg tttaaacgcg ttgatgatgc tttgtatcgg
     6241 gcgaaaaatg atggacgcaa ccgcgtgctg gcggcataag ccgcggatgc gtctcgagat
     6301 caacggctgc gcttagcgtg gcgctcccag ttttcttgct tcgcctgcgc cgttttacgt
     6361 agtgcgacgt aacacgcccc gctgccgcca tgatgcggta gcgcggtgca atatgcctga
     6421 acatcatcaa attcggtcag ccagcgcgcc acatagctgc ggacaatatt ggcatgcgat
     6481 ttatcttccc gccctttacc atgaataatc aacacattac gcaaaccatc cgccagggct
     6541 tggtgaatga aactgaacac cattttgcgg cactcttcca ccggctggcg caaaagattc
     6601 aggctcgcct gttgcggata tttaccactg cgcagcttat ccagcacccc atgttgcaac
     6661 ccttcccgcc gaaactccag cggctgactt agcgggatga tgtcgagaaa tccggtggtg
     6721 aggaaattat caagctgcag cgtgtcgata cgctgcggcg cacgttggtt acgcgttgga
     6781 tgccagtgga catctgtagc acgtttcagc ggctggacat cttccatggc gtcaagaaac
     6841 agcgatttgt cgtcaaggtt catgttacat cctcccgcaa ttaagagcgc gatatgataa
     6901 ccagaccggg tcggtccaac aacgtattac ccaaaattcc agtaataagt tccaaatatt
     6961 gccgatattt taagcaaaat gcttatgcat gattattcat tcacgatatt aataatgtaa
     7021 cttatatttt cgtgaaatct gtcactgaag aaaattggca actaaaggtt aaaaccgtta
     7081 taacacagtc accggcgcag aggagacaat gccggactta agacgcggat gcactgctgt
     7141 gtgtactgta gagtctggcg gatgtcgaca gactctattt ttttatgcag ttttaacttt
     7201 gcagatagcc gcattctcgc cggaattgcg tgattaatga cggggtcagt ggtgtctggc
     7261 gactatcacg ccgctgaatc aaataatagg ccgctttcgg taaaatttcg ctaaccggca
     7321 acatcaccag cccctgtccg tgcaagggat cgcagcccat ttcttcaggc agtatgctga
     7381 gaaaatcgct ttttgccacc agactgatac aggctgagaa cgtctcgcag actacaccga
     7441 cctgtggcgt ttgcgcctga tcgtcaagca attcactcaa ctgtttgtag taactgccgt
     7501 gtggcgtcgg cattgtccag ctgtaatcca gtaactgttt gatcgaacgg gcaccaatgg
     7561 cggggtgtcc cgggcggcaa aagatcgcga attgcttttc cagtaatttc tcaaaagtaa
     7621 attcgtggtc gtacggtccc tgataatagg tattgatggt gaaatccaat tctccctgac
     7681 gcaattcatt aatcatcgac accagttgcc cttccataat gcgtactttt acctgcggat
     7741 gctgctgatg aaaacgagat atgacagctg gcatcagact gcgggaaata ctggccccca
     7801 tgccgatatt aatctgccct gccagttgcc cttgtcgttg gcgaatatcc tcttgggctg
     7861 cgcgcagctc ttcaagaata agactggcgt gctgataaaa actttcaccg gcatcagtta
     7921 acgtcacgcc tttactacgg cgaaaaaaga gttgcgccgc taatccttct tccaactcct
     7981 gaatagattt actcagtgcc ggttgcgaca tattcaacat tcggctcgct ccgcgaatgc
     8041 tgccctgacg agccacttca acaaaagcac gaatttgatg aatttttacc tgaaaagcca
     8101 tgacgccacc gataaccgtt atttatcaga ccaaagaaac tggcatctac tttaatgcag
     8161 atgattgtgt cagggtaatt tatgaacggt taaaactgtg aaaaatcagt tagtgataag
     8221 taaaaactat cgctacgtga accgggtcac actttttact gatgacggga aaggttatgg
     8281 agtctttgaa tcaatttgtt aattcgcttg ccccaaaatt atcgcactgg cgacgtgatt
     8341 ttcatcacta tgcagagtct ggctgggtgg aattccgcac tgccaccctt gttgcggaag
     8401 aattgcagca gctcggctat tcactggcgc tgggccgcga agtagttaat gaaagtagcc
     8461 ggatgggact acctgatgaa ctcactctac aacgcgaatt cgagcgcgct cgtcaacagg
     8521 gtgcgctagc acaatggatt gcggtttttg aaggtggttt cactggtatc gtcgccaccc
     8581 tggataccgg tcgccccggt ccggtgatgg ctttccgtgt cgatatggac gcgctggatc
     8641 tcagtgaaga gcaggatgtc agccatcgcc cctaccgcga cggttttgcg tcatgtaacg
     8701 ccggaatgat gcatgcctgt ggtcatgatg gacataccgc cattgggctt gggctggcgc
     8761 atacccttaa acaattcgag tccggactac atggcgtcat caaactgatt tttcagcctg
     8821 cagaggaagg tacgcgtggc gcgcgggcgc aaaaccagaa gacggtcaca atgccttgtt
     8881 ggcggcagca caagccactc ttgcactgca tgcaatcgcc ccgcacagcg aaggagcttc
     8941 cagagtaaac gtgggcgtta tgcaggcagg aagcggtcgt aacgttgttc ctgcctcggc
     9001 gttgctgaaa gtggaaacac gcggggccag cgacgtcatt aatcaatatg tttttgaccg
     9061 tgcacaacaa gcgattcagg gcgcagcaac catgtatggt gtcggcgttg aaactcgtct
     9121 gatgggtgca gctaccgcca gttctccttc gccgcaatgg gtcgcatggt tgcaaagtca
     9181 ggcggctcag gtcgcggggg tcaatcaggc cattgaacgt gttgaagcgc ctgcgggttc
     9241 cgaagatgcc acattaatga tggcccgcgt gcagcaacat caagggcaag cctcctacgt
     9301 ggtgtttggc acacagctgg cggcaggtca tcacaacgaa aaattcgatt ttgacgagca
     9361 ggttctcgct attgccgtcg aaacgctggc gcgcaccgcg ctcaattttc cctggacgcg
     9421 aggtatctga tgcaggaaat ctatcgtttt atcgacgatg cgattgaagc cgatcgccaa
     9481 cgttataccg atattgccga tcaaatctgg gatcatccag aaacacgttt tgaagagttc
     9541 tggtcagcgg agcatctggc ttcggcgctg gaatctgcag gcttcaccgt tacccgcaac
     9601 gtaggctata tcccaaatgc ctttattgct tcgtttggtc aaggcaaacc ggttatcgcc
     9661 ctgctgggag aatatgacgc cctggcaggt ttaagtcagc aagcaggttg cgcgcaacct
     9721 acatccgtga cgcccggtga aaatggtcac ggttgcggac acaatttgct gggaaccgcc
     9781 gcctttgccg ctgcaatagc cgtcaagaaa tggctggaac aatatgggca aggcggcacg
     9841 gtgcgctttt atggttgtcc tggcgaagaa ggcggctcgg gtaaaacgtt catggttcgc
     9901 gagggggtat ttgatgatgt ggatgcggca ctcacctggc acccggaagc ctttgccggt
     9961 atgttcaata cccgcacgct ggcaaacatt caggcatcat ggcgctttaa agggatcgca
    10021 gcacatgccg cgaattcccc tcatttggga cgcagcgccc ttgatgccgt aacgttgatg
    10081 accactggca ccaacttcct caacgaacat attattgaaa aagcgcgcgt acactatgcc
    10141 atcacaaata gcggcgggat ctcgcccaac gtggtccagg cgcaggcaga agtgctttat
    10201 cttatccgcg cccccgaaat gaccgacgtg cagcatattt atgatcgggt cgccaaaatc
    10261 gccgaaggtg cggcattgat gaccgaaacc acggttgaat gccgcttcga caaagcctgt
    10321 tccagttatc tcccgaatcg caccttagaa aatgccatgt accatgccct atcccatttt
    10381 ggtaccccgg aatggaactc cgaagaactg gcttttacga aacaaattca ggctacgctc
    10441 ccccccaacg atcggcaaaa cagtctgaat aatatcgccg caaccggtgg cgaaaacggc
    10501 aaggcttttg cactacgtca tcgtgaaacg gtactggcga atgaggtcgc tccatatgcc
    10561 gccaccgata acgtgcttgc ggcatcgact gatgtcggcg acgtcagttg gaaactgcct
    10621 gttgcccagt gtttcagccc ctgttttgcc gtcggtacac cgctacatac gtggcaactg
    10681 gttagccagg ggcgaacatc tattgctcat aaaggaatgc tgctggcggc gaaaactatg
    10741 gcagcaacca cactcaatct cttcattgat tcagggctat tgcaagaatg ccaacaagag
    10801 catcagcaag ttacggacac gcaaccgtat cactgcccta tcccaaaaaa cgtgacaccg
    10861 tcatctttaa aataacaaca acaacgcaaa cacaacaacc gaggaatgcc catgagtatg
    10921 tcatccatac cgtcgtcctc ccaatccggg aagctctatg gctgggtcga aagaattggt
    10981 aacaaggttc cccatccttt tttgctcttt atctatttga ttatcgtact catggtgacg
    11041 acggcaattt tgtcggcctt tggcgtcagt gcgaaaaacc cgaccgatgg aacgccggtg
    11101 gtggtgaaaa acctgctcag tgtggaagga ttacactggt ttttacccaa tgttattaaa
    11161 aactttagcg gttttgctcc acttggtgcg atcctggcgc tggttttagg tgccggtctg
    11221 gcggagcgcg tcggcttact gccagcgcta atggttaaaa tggcatcgca tgttaatgtc
    11281 cgctacgcca gttatatggt gctgtttatt gcttttttca gccacatttc ttccgatgcg
    11341 gcgttagtga tcatgccacc gatgggtgcg ctgatttttc tggcggtggg caggcatcca
    11401 gttgcaggtt tactggctgc cattgcaggc gtaggttgcg gctttacggc taatttactg
    11461 attgtcacaa ccgacgtgtt gctgtcgggg atccgcacgg aagcggcggc tgcgttcaat
    11521 ccgcaaatgc acgtcagtgt aattgataac tggtatttta tggccagctc cgtagtcgta
    11581 ctgacgattg ttggcggcct gataaccgac aaaatcatcg agccacggtt aggtcaatgg
    11641 cagggaaaca gcgatgagaa actgcagaca ttgaccgaaa gtcagcgttt tggtttacgc
    11701 atagcaggtg tcgtatcgct actttttatt gctgcgatcg cgctgatggt gatcccggaa
    11761 aacgggatat tgcgcgatcc gattaatcac accgtgatgc catcaccctt tattaaaggt
    11821 atc
//
LOCUS       DAJVUN010000124        11784 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.124, whole genome shotgun sequence.
ACCESSION   DAJVUN010000124 DAJVUN010000000
VERSION     DAJVUN010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11784
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.124"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..192
                     /locus_tag="OQQ76_002872"
     CDS             <1..192
                     /locus_tag="OQQ76_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCS1969304.1"
                     /translation="RGAFFISALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGT
                     NTLLACCCLLRPEEVNSEY"
     gene            182..355
                     /locus_tag="OQQ76_002873"
     CDS             182..355
                     /locus_tag="OQQ76_002873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, GnsA/GnsB family"
                     /protein_id="HCS1969305.1"
                     /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKM
                     TGLESYDVKIKIM"
     gene            complement(404..1477)
                     /locus_tag="OQQ76_002874"
     CDS             complement(404..1477)
                     /locus_tag="OQQ76_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HCS1969306.1"
                     /translation="MAEKKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNI
                     YIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLTTGQLPSVHAAAML
                     LLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYL
                     LLSFFLYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFI
                     RHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIGCGKCAKNCPSRIPVDKLIQVRTV
                     ECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAG
                     VWQSPVPEELYRRLIPQAPMIGH"
     gene            complement(1549..4293)
                     /gene="torS"
                     /locus_tag="OQQ76_002875"
     CDS             complement(1549..4293)
                     /gene="torS"
                     /locus_tag="OQQ76_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415513.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system sensor histidine
                     kinase/response regulator TorS"
                     /protein_id="HCS1969307.1"
                     /translation="MNLTLTQRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQA
                     LIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQ
                     GFDTTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQQLSQQIVAAADEIARLAQGQAN
                     NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVM
                     NLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALY
                     QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLL
                     LLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIG
                     RLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA
                     MSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG
                     GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI
                     TNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRG
                     GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGL
                     RLLLIEDNPLTQRITVEMLNTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDVD
                     GITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL
                     QLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIK
                     RAAHQLKSSCSSLGMRIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI
                     "
     gene            4376..5326
                     /gene="torT"
                     /locus_tag="OQQ76_002876"
     CDS             4376..5326
                     /gene="torT"
                     /locus_tag="OQQ76_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system periplasmic protein TorT"
                     /protein_id="HCS1969308.1"
                     /translation="MRVLLFLLLSLFMLSAFSGDNLLRWHDAQHYTVQASTPLKAKRA
                     WKLCALYPSLKDSYWLSLNYGMQEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF
                     PDLQKQVANLPVIELVNALDDPLVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP
                     GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG
                     TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGQSVSDNV
                     SPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK"
     gene            complement(5299..5991)
                     /gene="torR"
                     /locus_tag="OQQ76_002877"
     CDS             complement(5299..5991)
                     /gene="torR"
                     /locus_tag="OQQ76_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TorR"
                     /protein_id="HCS1969309.1"
                     /translation="MPHHIVIVEDEPVTQARLQSRFTQEGYTVSVTASGAGLREIMQN
                     QPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK
                     PLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
                     AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ
                     HGEGYFLAADVC"
     gene            6121..7279
                     /gene="torC"
                     /locus_tag="OQQ76_002878"
                     /pseudo
     CDS             6121..7279
                     /gene="torC"
                     /locus_tag="OQQ76_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309178.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
     gene            7279..9859
                     /gene="torA"
                     /locus_tag="OQQ76_002879"
                     /pseudo
     CDS             7279..9859
                     /gene="torA"
                     /locus_tag="OQQ76_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415517.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
     gene            9856..10455
                     /gene="torD"
                     /locus_tag="OQQ76_002880"
     CDS             9856..10455
                     /gene="torD"
                     /locus_tag="OQQ76_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HCS1969310.1"
                     /translation="MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLL
                     KSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQ
                     EIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTA
                     LWQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNK"
     gene            complement(10548..10853)
                     /gene="cbpM"
                     /locus_tag="OQQ76_002881"
     CDS             complement(10548..10853)
                     /gene="cbpM"
                     /locus_tag="OQQ76_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HCS1969311.1"
                     /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV
                     FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP"
     gene            complement(10853..11773)
                     /gene="cbpA"
                     /locus_tag="OQQ76_002882"
     CDS             complement(10853..11773)
                     /gene="cbpA"
                     /locus_tag="OQQ76_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curved DNA-binding protein"
                     /protein_id="HCS1969312.1"
                     /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAET
                     RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF
                     GQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL
                     NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS
                     PWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP
                     PKPDENTAALWQQLADAQSSFDPRKDWGKA"
BASE COUNT         2796 a         3049 c         3134 g         2805 t
ORIGIN      
        1 cgtggagcct tttttatatc tgccttattt ttcttcaacg ctgtatgtat agtaagcgat
       61 aacctgttga ttattgaatc tttcggggag atggcttata acatttctta cctgactagg
      121 gtaccgggaa ccaacacctt actggcgtgt tgctgtcttt taagaccaga agaggttaac
      181 agtgaatatt gaagagttaa aaaaacaagc cgaaacggaa atcgccgact ttatcgcgca
      241 aaaaatcgcc gagctgaaca agaatacagg gaaagaagtc tctgaaattc gcttcaccgc
      301 acgagaaaaa atgaccgggc ttgaaagtta tgatgtcaaa atcaaaataa tgtgattttg
      361 tgaacatcac cccgtgcgag gtgatgttcc gcttgttgct aatttagtga ccaatcattg
      421 gcgcttgtgg aattaagcgt cggtacaatt cctccggcac cgggctttgc catactcccg
      481 catacattgc gtaaccaatc accgcgaaca taatccccag aaccagtagc gtcattaacc
      541 agccagacaa cgcaaaagct tttttatttg ccgcaggttt ttgcagtgaa aaggtcaatg
      601 ttgaggctac cggacatgac tctacgcaag tcatacagcc ggtacattcc actgttcgta
      661 cctgaattaa tttatctacc gggatccgtg atgggcaatt ttttgcgcat ttgccacagc
      721 cgatacaact ttcggcattg cgacgaatct taaacggcga taatagcgaa accacgccca
      781 tcagcgcgcc atatgggcaa agataacgac accaggcatg gcgaataaac aggctggcaa
      841 tcagcaaaac ggtcacgctg attaatgtcg cggtccccat atgacgaaag aaatcgagca
      901 tttttacgtc catcaccacg ctgtagggcg acaacataaa atagtgaatc gcctgagcgg
      961 gcatcaataa cgcgatatag agaaaaaaac tcaacagcaa atacttcacg ccgcgcagag
     1021 gaatatccag ccagcgggga aggacacatt gccgaccaaa cagtttgtta ccgagatcgc
     1081 cgattaattc agaaagcgta ccaaccgggc ataaccatga gcaaaaggcc tttttgagta
     1141 atagactgat gacgataaaa gcgaccaata acagcatcgc ggcggcgtgg acggacggta
     1201 actgacctgt tgtaaggcta tatttcagat tcatcagacc ggcaatcggt agccagcctt
     1261 cgatacctcc cggtctggcg acaaatgtcg tgctacttgc cgtttcgtaa tagcgcaccc
     1321 aataccagaa cgtgatggca atataaatat tcattgccaa cagtaataat tgcgtcgctt
     1381 tacgccaggt cgtggcattg cgccagtcat tccacggtaa tttgccgccc gtcgtgcctg
     1441 gccgccgctg ccagcgggtt ctttttttct ctgccatgat tttgccagtc cgttaagttg
     1501 cataccaaat gccactattc tagttgttct taactggctg atattgattc aaatcgcgtt
     1561 caggtctttc ttatgcaacc atgcttccag agcggcaaca ctgcgtgtaa tttcttcgtg
     1621 tggaaggggg gcagataatg gctgctgctc cagttgtgcg catagctggc tggcgatacg
     1681 cattcccaaa ctcgagcaac tgctttttag ctgatgcgcg gcacgcttta ttttctcgct
     1741 atcctgactg gcgcgggcaa tgtcgatttc atcgagaagc ggcagggcat gttgtgtaaa
     1801 taataccagc cattcgtgga tcttctccgt ccccattaac tgagcatctt cattgagttg
     1861 cgatacatcc agcgattgat cgttattgac ttgcagttgg agatagtgcg ccagtaactg
     1921 accgagcact tcacgcggca ccggtttagg gataatcccg cggaataatg aactggtacg
     1981 ctggcgcagc gtttcgtcaa tgacatgggc gctaaagcca atcaaaacca gcgacggata
     2041 ttgctgtgcc agttgtcggg caagcgtaat gccgtcgaca tccggcagat caaaatccac
     2101 cagtgcggca gcaaacggtt cgctattttg cagtgtctct aaagcctgcg cggcattgcc
     2161 aacagcaaca atctgcgcac cactggtgtt cagcatctca acggtaattc gctgggttag
     2221 cgggttatct tcaattaaca gcaaacgtaa accgtcaaga cgcaccgcct gattgactgt
     2281 ttttggcacg ggtgccgtgg caacacgtaa cggcaagcgt aaacaaaaac agcttccaac
     2341 ctccggcgtg ctggtggcgc tcagttcgcc gcccatcgcc tgggccagac ggctactgat
     2401 agtcagtccc agcccggtgc cgccgcgttt gccgcttacc tgcacaaatg gctggaagat
     2461 ttctgccagt ttcgcgggat caataccgca gccgctgtct tccacttcga ccagccattg
     2521 ctcgccatca gtgcggctac gtaaaacgat ctgcccttcg tcagtaaaac gcagggcgtt
     2581 gctcaacagg ttggttataa cctgacgaat acgtcgcgga tcgcccatta acgcggtcgg
     2641 tacatcgtcg gcaattgctg ttgccaggcg aatcgggcga cctttcaccc gtccgctcat
     2701 taattgcagg gtactttcca gcagcgggcg cggttcaaag ggctcatcgc tgaccgaaac
     2761 attcttgcca cctgcttcga tagccgaata atcgagaata tcgttgagga tggtcagcaa
     2821 cgattcgcca gagtcggtaa tcgcccgcaa atcatcacgc tgggcgttaa gtgcggggtt
     2881 atctgccagc agttgagcag tgccgagaat accgtacagc ggtgtgcgga tctcatggct
     2941 catcgccgcc agaaaggccg attttgcctg gctggctttt tctgcttccg cccgtgcctg
     3001 tcggtgttct atcaccagtt cctgcaattc agctgtacgc gctttgacct gcgccgccag
     3061 ctgttcacgg tggcgattca gtgcatgaac agtgctgcga aacgcatcca tcagccgccc
     3121 gatggtatcc agctcccgta cgccagcggt ttccgggaaa ggggagtcaa tatcaccgtc
     3181 cagcagccgt tgcagcgcct gcgtttgttc ggcaagtgga cgcgtgactg agcgataaac
     3241 cacgcgccaa aggatcagaa tcagtgcgca aagtgaaacc atccccagca ataacaggct
     3301 gtattgcccg cgtgcactgg ctttttccag atgcgccagt ccgtgctgat tacgcagctc
     3361 aatggtgtcg accagctgac tgacttcgct actaaactgc gcgaactggg cgatgttatt
     3421 ttgtgcgaga gtttgtaggt gattgctgat ttcactgtcc tgctgataca gcgccagcaa
     3481 atcgctatat tggctaacgg tagttaacgt tgttgcgacc tgcgcacgaa cacccggatc
     3541 ttcaatgcgt atttgccgac gttgcagaat tttcaccgca ttattgagct gcttttccag
     3601 cgttggtgca tttttctgga tctgctccag ccccagattc atcaccattt gctgcacccg
     3661 cagagcgcta aggcgcagtt cattcatctg gttaacatac tcaagatcga tatcaatcag
     3721 ccgatcgagt gcactttcag cagcctgacg ctgatcttgt tcgatcaaat cgtaaatccc
     3781 ggcctgggtc gctccagcgg aagttgtcgc attattcgcc tgaccttgcg ccaggcgtgc
     3841 gatctcatcg gcggcagcga ctatctgctg actgagttgc tgttgttgct ggcgtagttg
     3901 cagacgccgc cccaccagtt ccccttgctg acgtaacgaa cgggagatct cctgctcctg
     3961 ttgttcaata gcggtggtat caaaaccttg ttcccgtaac gcttgcagca acgcattaat
     4021 cttcaggctt tgtgcggtga gcattcgccc ctgcgcctgc cacatctttt cgttatcggc
     4081 actggtcagg ttctgcgcgg cgaaaagttc ccaggcgctg gcttcgctca actggcgcgc
     4141 catattcatg gtaggaatca atgcctgagt gttgtctttt tccacctggc tgataaagcg
     4201 caggttgtac catcccacca gggtactggt tagggttaac agcgccatca gggcaaagcc
     4261 catccagagt ctttgggtca gggttaaatt cacggtcggt gcactttagg tgaaaaaggt
     4321 tgagtcgcaa agcagaatgc atctagcata aagccttatt attgatgagg ctatcatgcg
     4381 cgtactgcta tttttacttc tttccctttt catgttatcg gcattttcgg gtgataacct
     4441 gttgcgctgg catgatgcgc agcattacac ggtgcaagcc tctacgccgc ttaaagccaa
     4501 acgcgcatgg aaactgtgcg cgctttatcc cagcctgaaa gattcatact ggttatcgtt
     4561 gaactatggt atgcaggagg caggcggcta cagccagttg gctacccagc aagcacaaat
     4621 cgaccagtgt aaacagtggg gcgcagaggc cattttgctc ggtagtagca ctacgtcatt
     4681 tcccgacctg caaaagcagg tagcaaatct gccggtgatc gaactggtaa atgctcttga
     4741 tgatcccctg gtgaaaagcc gcgttggtgt accctggttt cagatgggct atcaacctgg
     4801 gcgatatttg gtgcaatggg cgcacggtaa accactgaac gtgctgttga tgcccggacc
     4861 cgataatgcc gggggcagta aagagatggt cgagggtttt cgcgcagcca ttgccggaag
     4921 cccggtgcgt attgttgata ttgcgcttgg tgataacgat attgaaatcc agcgtaacct
     4981 gttgcaggag atgctggaac gccacccaga aatcgacgtc gttgccggaa cggccattgc
     5041 ggcagaggcg gcaatgggtg aagggcgtaa cctgaaaacg ccgcttaccg tggtgtcgtt
     5101 ttatctttca catcaggtgt atcgcgggct gaagcgggga agagtgatta tggctgccag
     5161 cgatcaaatg gtctggcagg ggcaatcggt gtctgataat gtcagcccac cgattttagt
     5221 tctgacgccg aaaaatgccg accgtgaaca tattcgccgc tcgctgtcac cagggggatt
     5281 tcgtccggtc tatttttatc agcatacatc agcggctaag aaataacctt caccatgttg
     5341 cgtcaccagt aaatccgcgc tgagtttatg acgtaaacga cgaattaaca catcgacggt
     5401 gcgcaggtca gggttttcca cccgacgcgc agaaagcata cgtagcagac gttcacggct
     5461 gagaatttcg cccggattcg tcacaaatgc caccaacatt tcatactctg cgcgggtcag
     5521 tttaatcggc tcgccatccc gctccagcgt atggcgcgac acattcaggc aataaccggc
     5581 aaagcgatag cagttgtcct gagtgtgcgg ttgagcttgt cgcgcgaggt cgattcgcca
     5641 gagcagattt ttcacccgta ctaccagttc gcgcagttcc agcggtttgg tgacgtaatc
     5701 gtctgcgccc atttccagcc caacaatacg gtcaatccga tcgctgcgtc cggtaaccag
     5761 aataatcccc accgttgagc gttctcgcag ggcgcgggtt aacatcaggc cattttcatc
     5821 gggtaagttg atatccagca gaattaaatc taccggctga ttctgcataa tttcccgcag
     5881 cccggcaccg ctcgctgtaa cggaaacggt atacccctcc tgagtgaagc gcgattgtaa
     5941 tcgcgcctgg gtaaccggct catcttcaac aataacaatg tgatgtggca tcagagggtt
     6001 ttactcattc tgttcatatc tgttcatatt ctgccgtaag ccgttcatcc tgaccagtgc
     6061 cgctgttcat atttgctcat taagatcgct tcactaaacc ataattttac agcggctatt
     6121 atgcggaaac tctggaacgc gctacgccga cccagtgctc gttggtcggt actggcgctg
     6181 gtcgcaattg ggattgtgat tggcattgcg ctgattgtat tgccacacgt tgggatcaaa
     6241 gtcaccagca caaccgaatt ttgtgtcagt tgccacagta tgcaaccggt gtatgaagaa
     6301 tataaacagt cggtgcattt ccagaacgcc tccggcgtgc gagctgaatg ccatgccgga
     6361 tattccaggc atggtgaagc gcaaactgga agcgagcaat gatatctacc agacctttat
     6421 tgctcactcc attgatacac ctgaaaaatt cgaagccaaa cgcgcggaac ttgccgagcg
     6481 tgaatgggcg cgaatgaaag aaaacaactc ggcaacctgc cgctcctgcc ataactacga
     6541 tgcgatggat catgcgaagc agcatcctga agcggcacgt cagatgaagg tggcagcgaa
     6601 agataatcaa tcctgcatcg actgtcataa aggtattgcc caccagttac cggatatgag
     6661 tagcggcttc cgtaagcagt tcgatgagct gcgcgccagt gctaatgaca gtggtgacac
     6721 gctgtactct attgatatta agccaattta tgcggcgaaa ggcgataaag aagcctctgg
     6781 ttctctgctg cctgcttcgg aagtgaaagt ccttaaacgt gacggcgact ggctgcaaat
     6841 tgaaattacc ggctggacgg aaagcgccgg acgtcagcgt gtactcaccc aattcccagg
     6901 taaacgcatc tttgttgcct cgattcgtgg tgatgtgcag cagcaggtaa aaacgctgga
     6961 gaaaaccacc gttgccgaca ccaataccga gtggagcaag ttgcaggcca ctgcgtggat
     7021 gaagaaaggt gatatggtga acgatatcaa accgatctgg gcttatgcgg attcgttgta
     7081 caacggcacc tgtaaccagt gccacggcgc accggaaatc tctcactttg atgctaacgg
     7141 ctggattggc acgctcaacg gcatgattgg ctttaccagt ctcgataaac gtgaagaacg
     7201 caccttgttg aaatatctgc aaatgaatgc gtctgacatc gcaggtaagg ctcacggcga
     7261 taagaaggaa gaaaaataat gaacaataac gatctctttc aggcatcacg tcggcgtttt
     7321 ctggcacaac tcggcggctt aacagtcgcc gggatgctgg ggccgtcatt gttaacgccg
     7381 cgcagtgcga ctgcggcgca agcggcggct gtcatctcga aagagggcat tcttaccggg
     7441 tcgcactggg gggctatccg cgcgacggtg aaggatggtc gctttgtggc ggcaaaaccg
     7501 ttcgaactgg ataaatatcc gtcgaaaatg attgccggat tgccggattg ccggattgcc
     7561 ggattgccgg attgccggat tgccggatca cgtacacaac gcggcgcgta ttcgttatcc
     7621 gatggtacgc gtggactggc tgcgtaagcg ccatctcagc gatacctccc agcgcggtga
     7681 taaccgtttt gtgcgcgtga gctgggatga agccctcgac atgttctatg aagaactgga
     7741 acgcgtgcag aaaactcacg ggccgagtgc cttgctgacc gccagtggtt ggcaatcgac
     7801 ggggatgttc cataacgctt cggggatgct ggcgaaagct attgccttgc atggtaatag
     7861 cgttggtacg ggcggagatt actctaccgg tgctgcgcag gtgatcctgc cgcgcgtagt
     7921 cggttcgatg gaagtgtatg aacagcaaac ctcctggccg ctggtattgc agaacagcaa
     7981 aaccattatg ctgtggggct ccgatttgct gaaaaaccag caagcgaact ggtggtgccc
     8041 ggatcacgat gtttatgaat attacgagca actaaaagcg aaagtcgccg ccggtgaaat
     8101 tgaggtcatc agcatcgatc cggttgtcac atctacccat gagtatctgg ggcgcgagca
     8161 tgtgaagcac attgcggtta acccgcaaac tgacgtgccg ctgcaactgg cgctggcgta
     8221 tacgctgtac agtgaaaacc tgtacgacaa aaacttcctc gctaactact gtgtaggttt
     8281 tgagcagttc ctgccgtatc tgctgggtga gaaagacggt cagccgaaag atgccgcatg
     8341 ggctgaaaaa ctgaccggca ttgatgccga aaccattcgt gggctggcgc ggcagatggc
     8401 ggcgaacaga acgcaaatta ttgctggctg gtgcgtgcag cgtatgcagc acggtgaaca
     8461 gtgggcgtgg atgattgtgg ttctggcggc gatgctgggg caaattggcc tgccaggtgg
     8521 tggttttggt tttggctggc actacaacgg cgcaggcacg ccggggcgta aaggcgttat
     8581 tctgagtggt ttctccggct ctacgtcgat tccgcctgtt cacgacaaca gtgactacaa
     8641 aggctacagc agcaccattc cgattgcccg ttttatcgat gcgatcctcg aaccggggaa
     8701 agtgatcaac tggaacggta aatcggtaaa actgccgcca ctgaaaatgt gtatttttgc
     8761 cggaactaac ccattccatc gccatcagca gatcaaccgc attattgaag gctggcgcaa
     8821 gctggaaacg gttatcgcca tagataacca gtggacctca acctgccgct ttgccgatat
     8881 tgtactgcct gcgaccacgc agtttgagcg taacgatctc gaccagtacg gcaaccactc
     8941 caaccgtggc attatcgcca tgaaacaggt ggtgccgccg cagttcgagg cgcgcaacga
     9001 ctttgatatt ttccgcgagc tgtgccgtcg ctttaatcgc gaagaagcct ttaccgaagg
     9061 gctggacgaa atgggctggc tgaaacgcat ctggcaggaa ggtgtacaac aaggcaaagg
     9121 acgcggcgtt catctgccag cgtttgatga cttctggaat aacaaagagt acgtcgagtt
     9181 tgaccatccg cagatgtttg ttcgccacca ggcattccgc gaagatccgg atctcgaacc
     9241 gctgggcacg ccgagtggcc tgattgagat ctactcgaaa accatcgccg atatgaacta
     9301 cgacgattgt caggggcatc cgatgtggtt tgagaaaatc gaacgctccc acggtgggcc
     9361 cggctcgcag aagtatccgt tgcatctgca atctgtgcat ccggatttcc gacttcactc
     9421 gcagttatgt gagtcggaaa ctctgcgtca gcaatatacg gtagcgggta aagagccagt
     9481 attcattaac ccgcaggatg ccagcgcgcg cggtattcgt aacggtgatg tggtacgcgt
     9541 ctttaacgct cgcggtcagg tgttggcagg ggcagtagtt tctgaccgct atgcacccgg
     9601 cgtggcacga attcacgaag gggcatggta cgatccagat aaaggcggcg agcctggtgc
     9661 gctgtgcaaa tacggtaacc ccaacgtgct gaccatcgac atcggtactt cgcagctggc
     9721 gcaggcgacc agtgcgcaca ctacgctggt ggaaattgag aagtacaatg gagcagtgga
     9781 gcaggtgacg gcgtttaacg gccctgtgga gatggtggcg cagtgcgaat atgttcccgc
     9841 gtcgcaggtg aaatcatgac cacgctgaca gcacaacaga ttgcctgtgt ttacgcctgg
     9901 ctggcgcagt tgttctcccg tgaactggac gatgaacaac tgacgcaaat cgccagtgcg
     9961 cagatggctg aatggttttc gttgctgaaa agcgaaccgc cgctggctgc ggcggtgaat
    10021 gagctggaaa actgtattgc cacgctgaca gtacgtgacg atgcccgtct ggaactggcc
    10081 gctgactttt gcggcctgtt tttgatgact gataagcagg cggcgctgcc gtatgcatcg
    10141 gcctacaaac aggacgagca agagattaaa cgcttgttag ttgaggcagg gatggaaacc
    10201 agcggcaatt tcaacgaacc ggcagaccat ctggcgatct atctcgagtt gttgagtcat
    10261 ctgcattttt cgctgggaga ggggaccgtt cctgcgcgaa gaatcgacag tttgcggcaa
    10321 aaaacactga cggcgctgtg gcaatggtta ccagagtttg ctgcgcgttg ccatcagtat
    10381 gacagctttg gtttttacgc ggcactaagc cagttattgc tggtgttagt ggagtgcgac
    10441 caccaaaaca aataacgtcg tttatgcgcc tgaaaagacg cgtttagcgt cgcatcaggc
    10501 attatggcgc agttgccgga tgcgtcatca catccggcaa acacacatca cggatgagct
    10561 acaaaccggg aaagccgctg gcgtagcagg cggttttcct gcttcaggtg tgcaatatca
    10621 tccattaacg tcagcgccac cgcgatcccc ggccagtcca gagccagttc atgacgcagg
    10681 cgtaccgcgc gttgcaccac aatggcggca tggtcgtcaa atacccaggt tgtttcctgg
    10741 atctcacgcg gttcaaccac ccccaaaccg acaatttcat tcaactcctc ttcagagatg
    10801 ccggtatgca ggcaaaattc ggtaatagta aaagtcaccg taacattagc catcatgctt
    10861 tcccccaatc tttacgtgga tcaaaagacg actgggcgtc tgccagttgc tgccacagcg
    10921 cggcagtgtt ttcatccggt ttcggcggca tcacgatttt cagtaccgca tacagatcgc
    10981 cggtctgttt tttgctcacc agacctttgc ctttaacgcg caatcgttgc ccggcctggc
    11041 tgcctggcgg gatagtcagc aaaatgcttt ctttcagtgt tggaacggtg actttagcac
    11101 ccagcgccgc ttcccacggg ctaaccggca ccacaatttc cagatcctgg ccgacaatat
    11161 cgaacagcgg atgtggcgca atatgaatca ccagccacaa atcgccattt ggaccaccgt
    11221 tttcgcccgg cgtcccctgg cctttcagac ggatgcgttg accattgccg acgcccgccg
    11281 ggatcttcac attcagcgtt ttcgggattt cctgttcgat catgccaaag gcgttataaa
    11341 ccggcaggtt atagctgatg gtacgcttat gctcagtcag cgtttcttcg aggaataccg
    11401 ccacttcgat ttcaatatcg tggccgcgtg cggcggggcg ttgacggctc tggcgggcat
    11461 gctgaccgaa aattgacgag aagatatcgt caaaatcttc ggcattaaaa ctctgaccgt
    11521 cgccatgatg gaactgacgg ttaaattgcg gatcgttgcg atgttgccac atctgatcat
    11581 actcagcgcg acgttgttca tcacttaaca cttcccaggc ttcagcgacc tctttgaagc
    11641 gggtttcggc atccggttct ttgctgacat caggatggta tttacgggcc agtcgacgat
    11701 aggcggtctt gattgtcttg agatcgtccg tcggtttcac gcccatgatg gcgtaataat
    11761 cctttaattc catagcgtta tctc
//
LOCUS       DAJVUN010000125        11707 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.125, whole genome shotgun sequence.
ACCESSION   DAJVUN010000125 DAJVUN010000000
VERSION     DAJVUN010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11707
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.125"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(75..734)
                     /locus_tag="OQQ76_002883"
     CDS             complement(75..734)
                     /locus_tag="OQQ76_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HCS1969313.1"
                     /translation="MSNWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLV
                     ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT
                     ERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG
                     VRNEEEALELYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLA
                     E"
     gene            complement(1048..1404)
                     /locus_tag="OQQ76_002884"
     CDS             complement(1048..1404)
                     /locus_tag="OQQ76_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310584.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YebF"
                     /protein_id="HCS1969314.1"
                     /translation="MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIA
                     ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY
                     QVSVDCKAGMAEYQRR"
     gene            complement(1471..1687)
                     /locus_tag="OQQ76_002885"
                     /pseudo
     CDS             complement(1471..1687)
                     /locus_tag="OQQ76_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310585.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YebG family protein"
     gene            1821..2999
                     /gene="purT"
                     /locus_tag="OQQ76_002886"
     CDS             1821..2999
                     /gene="purT"
                     /locus_tag="OQQ76_002886"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HCS1969315.1"
                     /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY
                     ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVV
                     PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS
                     SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC
                     APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCSDEVI
                     FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN
                     VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG
                     "
     gene            complement(3055..3696)
                     /gene="kdgA"
                     /locus_tag="OQQ76_002887"
                     /gene_synonym="eda"
     CDS             complement(3055..3696)
                     /gene="kdgA"
                     /locus_tag="OQQ76_002887"
                     /gene_synonym="eda"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HCS1969316.1"
                     /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL
                     EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK
                     AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP
                     TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL"
     gene            complement(3733..5544)
                     /gene="edd"
                     /locus_tag="OQQ76_002888"
     CDS             complement(3733..5544)
                     /gene="edd"
                     /locus_tag="OQQ76_002888"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HCS1969317.1"
                     /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN
                     LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG
                     QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG
                     LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP
                     GTCTFYGTANTNQMVVEFMGMQSPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM
                     PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA
                     RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL
                     DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV
                     FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT
                     DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE
                     PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF"
     gene            complement(5779..7254)
                     /gene="zwf"
                     /locus_tag="OQQ76_002889"
     CDS             complement(5779..7254)
                     /gene="zwf"
                     /locus_tag="OQQ76_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HCS1969318.1"
                     /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTR
                     IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRL
                     GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN
                     DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG
                     IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR
                     SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY
                     LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG
                     LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD
                     SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE"
     gene            7592..8461
                     /gene="hexR"
                     /locus_tag="OQQ76_002890"
                     /gene_synonym="yebK"
     CDS             7592..8461
                     /gene="hexR"
                     /locus_tag="OQQ76_002890"
                     /gene_synonym="yebK"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator HexR"
                     /protein_id="HCS1969319.1"
                     /translation="MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEA
                     NVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA
                     MATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS
                     DDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVKLAQLARENDAMVIALTSAGTPLARE
                     ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES
                     RFDKQLLNLSDDR"
     gene            8589..10031
                     /gene="pyk"
                     /locus_tag="OQQ76_002891"
     CDS             8589..10031
                     /gene="pyk"
                     /locus_tag="OQQ76_002891"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HCS1969320.1"
                     /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP
                     EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK
                     GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK
                     GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA
                     KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL
                     NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM
                     ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA
                     LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGY
                     LMSGDLVIVTQGDVMSTVGSTNTTRILTVE"
     gene            complement(10091..10933)
                     /locus_tag="OQQ76_002892"
     CDS             complement(10091..10933)
                     /locus_tag="OQQ76_002892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HCS1969321.1"
                     /translation="MHHIKTAADLNCFLNSMVAVSQPTVDKIIFGAEATLINKIGTCW
                     IASMDVLRKAVFEGVNIIITHETTFYSYADLEGDDLEFSWARKIMDYTRGELSYLKII
                     EQKKEFLHKNNLVIIRCHDVMDREPTFGMSKALAQQLELDVTNIVASDEMYCVYAIEP
                     DSAINITKRFAKNLKIYNLPGIQFYGDKARVVRTVGIGAGCFCDPIQYMEYQADYYIT
                     INDSIKTWVQTQYSKDSGLPMAVIGHSVAEEAGMRRLASYLDLHSGYPCIHFTGGCDY
                     DWIE"
     gene            complement(10956..11640)
                     /locus_tag="OQQ76_002893"
                     /pseudo
     CDS             complement(10956..11640)
                     /locus_tag="OQQ76_002893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326057.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
BASE COUNT         2947 a         2987 c         2799 g         2974 t
ORIGIN      
        1 atcagcctgt tcaaatggct gtgcgattct ggatagcccg aaatagtcaa cttcaggcta
       61 tccagagagc ggaattattc cgccaaagtg cgtttttgct gttcgagatc gcgttcaatg
      121 ccgtcacgaa catcctgggg gattttcagc gcgtcaccca gtgcattcag gtaactgcgt
      181 tccataaaat ggtcaatatc aatagccgcg caactcagga aatagagttc cagcgcctct
      241 tcttcattgc ggaccccggt agccaggcgt tgtggatcca gcggttgttc gattgcctgc
      301 tcaatgagta cacgcccctg ctcttccacg ccggcttcac gcaattgctg gtcgattgcc
      361 gcacgttctt tggcatcaat atgaccatca cttttagcgg caaagaccag cgcaaggatc
      421 aaacgttctg tacgctcatc cagcggcgta ctttgcgcgc caaactgcgg ttcgtcctga
      481 tgcgccgcgc gaattttatc tttgtattta ttccacagca ccgtacccgc taccgctccg
      541 ccgccaacca gtaacgcgtt ggtgccatat ttcgtaagaa gtttacgtgc tgatttattt
      601 gcgaccagca gcccagccag tccgcctaat gcgcctggca ctaacagttt gcccaatccc
      661 tgatccgcag acgaggagat agaagaactg ctttgcccaa gcagggattg cagttgattt
      721 aaccagttac tcaataacca tttttagtgc ctgtagcata gcggatgagg atgtcagaaa
      781 atgtatatcg agacaaaaga tgcgcaaata agcggggcgg taggccgtta ttcaaagaaa
      841 ttcgcgccag gtaaggtatt tactgtatat caggtgataa gggtatttta ggtgaaagta
      901 gtttgtcgtt ttgagtggca ttgtttgatg ctgattgccc gatgcgacgc tgttgcgtct
      961 tctcaggcct acgattgtgg tgcgttctgg ggcggacaag gcactcgcgc cgcatccgcc
     1021 aacggtcaat caaattatca gaagccatta acgccgctga tattccgcca ttcccgcttt
     1081 gcagtccacg ctgacctggt aatgaatatc ggcactttta ccacgcacgg ttagcggtac
     1141 tgaccattta tcatctttac cctgaatgtc ctgcaaactg acccaagcca cgggatcggc
     1201 ctgaccgaca attttttgat catctgccca acgcgccacg cgattttgtt gataatcacg
     1261 ttttacgctc gcggcaattc cggcagcatc cagaccttca cactttggga aagtgaccga
     1321 cttgctggtt tcattattgg cagcgaaaac tgatgcgcag gcagaaacca acaacagccc
     1381 taaaaacgcc cctctttttt tcatgttttt ctccatagca caatgattca ggagaaagca
     1441 tggtacaaat tgtcaggagc gcaagttgct tcaggccgcg tgtgaggcat cttcctcttc
     1501 ggattcagca ccgacgacct gtgggtgggg acggtaattt gccggttttc agaatggtgc
     1561 tcagcacatc tttttgttct gccagccata gcgaaagggc ttcacgttgc tcggcttcct
     1621 ttttgctggt aaacgacatt ttctcttcgc cctcacgaat gactacgtat ttaacttcaa
     1681 ccgccatttg cagcctctca taataactgt gattttatac agtatatttc ttttcggttg
     1741 agaaatcaac atcagcaata aagacacacg caaacgtttt cgtttatact gcgcgcggaa
     1801 ttaatcaggg gatattcgtt atgacgttat taggcactgc gctgcgtccg gcagcaactc
     1861 gcgtgatgtt attaggctcc ggtgaactgg gtaaagaagt ggcaatcgag tgtcagcgtc
     1921 tcggcgtaga ggtgattgcc gtcgatcgct atgccgacgc accagccatg catgtcgcgc
     1981 atcgctccca tgtcattaat atgcttgatg gtgatgcatt acgccgtgtg gttgaactgg
     2041 aaaaaccaca ttatatcgtg ccggagatcg aagctattgc caccgatatg ctgatccaac
     2101 ttgaagagga aggactgaat gttgtcccct gcgctcgcgc aacgaaatta acgatgaatc
     2161 gcgagggtat ccgtcgcctg gcggcagaag agctgcagct gcccacttcc acttatcgtt
     2221 ttgccgatag cgaaagcctt ttccgcgagg cggttgctga cattggctat ccctgcattg
     2281 taaaaccggt gatgagctct tccggcaagg ggcagacgtt tattcgttct gcagagcaac
     2341 ttgctcaggc atggaagtac gctcagcaag gcggtcgcgc cggagcgggc cgcgtaattg
     2401 ttgaaggcgt cgttaagttt gacttcgaaa ttaccttgct aaccgtcagc gcggtggatg
     2461 gcgtccattt ctgtgcaccg gtaggtcatc gccaggaaga tggcgactac cgtgaatcct
     2521 ggcaaccaca gcaaatgagc ccgcttgccc ttgaacgtgc gcaggagatt gcccgtaaag
     2581 tggtgctggc actgggcggt tatggtctgt ttggtgtcga gctgtttgtc tgtagtgatg
     2641 aggtgatttt cagtgaggtc tcccctcgtc cacatgatac cgggatggtg acgttaattt
     2701 ctcaagatct ttcagagttt gccctgcatg tacgtgcctt cctcggactt ccggttggcg
     2761 ggatccgtca gtatggtcct gcagcttctg ccgttattct gccacaactg accagtcaga
     2821 atgtcacgtt tgataatgtg cagaatgccg taggcgcaga tttgcagatt cgtttatttg
     2881 gtaagccgga aattgatggc agccgtcgtc tgggtgttgc gctggcgacc gctgagagtg
     2941 ttgttgacgc cattgaacgc gcgaagcacg ccgccggaca ggtaaaagta cagggttaaa
     3001 cccggcaaaa aaacgctaca aaaatgcccg atcgtagatc gggcgttttg acttttacag
     3061 cttagcgcct tctacagctt cacgcgccag cttagtaatg cggtcgtaat cgcccgcttc
     3121 cagcgcatct gccggaacca gccaggaacc accgatgcac agcacgcttt tcagcgccag
     3181 gtagtcacgg tagttagccg gagaaatacc acccgtcggg cagaaacgga cctgggagaa
     3241 cggacccgcg atcgcctgca gggctttcac gccgccgtta gcttcagccg ggaagaattt
     3301 gaactctttc aaaccgtagt ccatacccag catcagttcg gaaacagtgc tgatccccgg
     3361 aattagagga atagtccctt cggtagcagc tttcagcagc ggctcggtca gacccgggct
     3421 aattgcgaac tgtgcacccg cttcagtgac ttctgccagc tgctgtggat tcagcaccgt
     3481 accggcaccc acaatcgctt caggcacttc tttggcgata gcacggatag cgtcaactgc
     3541 acactcggta cgcagagtca cttccagaac gcgcacccca ccagcaacca acgcttttgc
     3601 catcggcact gcgtgttcca gtttttttac cacgataacc ggtacaaccg ggccggtggt
     3661 caggattgat tctgcacttg ttttccagtt tttcatcaga gttttctctc gcctgattat
     3721 aaatttgtcg tcttaaaaag tgatacaggt tgcgccctgt tcggcaccgg acagtttttc
     3781 acgcaaggcg ctgaataatt cacgtcctgt ccccacgcgt gacgcgctca ggtcaggaat
     3841 gtgcggttcg cgagcagcca gttccgcttc gtctaccagc agcgtcagtt cgcctgtctg
     3901 tccattcaca cgaatgatgt ccccgtcgcg cacttttgcc agcagcccgc catcgtaggc
     3961 ttctggtgtt acgtggatag ctgacggcac tttacctgaa gcgccggaga gtcgtccatc
     4021 ggtaactaac gcaattttga aacaccggtc caataataca ccaagtggcg gcatgagttt
     4081 atgtaattct ggcattccgt tcgcttttgg cccctgatga cggacaacaa cgacacaatc
     4141 gcggtccagc aaacccgctt caaaggccgg cataacgtca tgctggcttt caaaaacaac
     4201 cgctggcgct tcaatcacct ggttctcaac cggcacggca gaggttttca taaccgcacg
     4261 gcctaggtta ccgcttaaca cttttgtccc accatgatga gagaaaggtt gttcgaagga
     4321 agcgatcaca ttgctgtcga gtgatttttc cgccccttcc cgccagtcca gttcaccatt
     4381 attcagccat ggttcaaggg tataacgaga cagaccaaag cctgccaccg tattgacatc
     4441 ttcatgcagc aggcctgctt tgagcagttc acgcaccaga accggtacgc cacctgccgc
     4501 ctggaagtgg ttaatatcgg ccggaccgtt cgggtagaga cgtgccatca gcggtacaac
     4561 atcagaaagg tcagagaagt catcccagtt aatctgaata ccggccgcgc gcgccatcgc
     4621 caccaggtgc atggtgtggt tagtggaacc accggtcgcc agcagtgcaa cgataccgtt
     4681 caccaccact ttctcatcga tcatcttacc gatcggcatc cattcattac cattaccggt
     4741 catgcgtgta acctgacgcg cagcggcagc ggtcaaagca tcgcgcagcg gagaatccgg
     4801 atgaacaaaa gaagagcctg gcgactgcat ccccataaat tccaccacca tctggttggt
     4861 gttggcagta ccgtagaaag tacatgttcc cggcgcatgg taagacgcgg cttctgactc
     4921 cagtaaggcc atgcggtcca ctttaccttc ggcataaagc tggcgaatac gcactttttc
     4981 tttatttggc aaaccgcttg ccatcggtcc agacggcaca aacaccgcag gcaaatgacc
     5041 aaacgacagg gctgccatcg tcagacccgg gacaatcttg tcgcacacac cgaggaacag
     5101 agcaccatca aacatgttat gggacagccc caccgccgca gacatcgcta tcacttcgcg
     5161 gcttagcagc gacaattcca ttccatcctg cccctgggtg acaccatcac acatcgccgg
     5221 aacaccgccc gcaacctgac caaccgcatt cgcttcatgc agggctttac gaatgatttc
     5281 tggatagtgt tcataaggct ggtgcgcgga gagcatgtcg ttataggagg tgatgatggc
     5341 gatattgtta cgcaacatgc ttttcaaaga ggctttgtct tctggctggc aggcagcgaa
     5401 accgtgtgcc aggttaccgc atgccaactg cgaacgatga acggtcgacg ttttcgcttg
     5461 ttctatccgg gcgagataag cagagcgagt ctcgcgcgaa cgttcaatga ttcgatttgt
     5521 tacgcgtaac aattgtggat tcataaaggc tcctgaaatt gagttgtcag agcaggatga
     5581 ttcacaacgc gtttcattca gaggatttat gagtgaaacg cctgtaaccg gagctcatag
     5641 ggcaaaaacg tttcagtcag tgtaataaaa aaagcctcgt gggtgaatcc gcacgaggcc
     5701 tgaaagtgta aaaattgttc tacaatctgt gcaagatcat gttaccggta aaataaccat
     5761 aaaggataag cgcagatatt actcaaactc attccaggaa cgaccatcac gggtaatcat
     5821 cgccaccgag gcaacgggtc cccaggttcc ggcctgatac ggtttcggcg catcattgtc
     5881 catcgcccac gcctcagtaa tggagtctac ccatttccag gcttcttcca cttcatcacg
     5941 acgtacaaac agtgcctgaa taccacgcat ggtttccagc agcagacgtt cataggcatc
     6001 cgccagatgc gtctgattaa aggtttctga atagctcaga tccagcttgg tgatttgcag
     6061 gttatgtttg tggtcaaggc caggaacttt attcagtacc tggatatcca cgccttcatc
     6121 aggttgcaga cggatagtca gtttattctg cggcagatcc tgccacgact ctttaaacag
     6181 attcagttca ggtgttttga aatagaccac gacttcagaa catttggtcg gcagacgttt
     6241 accagtacgc aggtagaatg gcacaccggc ccagcgccag ttatcaatgt cgacgcggat
     6301 cgccacgaag gtttctgtat tgctgctctt gttcgcgccc tcttcttcca gatatcccgg
     6361 cacttttttg ccctgggcga agcccgcagt atattgccca cgtacggttt tttcgcgtac
     6421 gttggagcgg tcgatgcggc gcagggactt cagtactttc actttttcat cgcggatgct
     6481 gtctgcgctc aggtcagatg gcggagacat cgcaatcatg cagagaattt gtagcaggtg
     6541 gttctgaatc atgtcacgca tctgaccggc tttatcaaaa tagccccagc gcccttcgat
     6601 ccccacttct tctgccacgg taatctcaac atgatcaatg gtgcgattgt cccagttatt
     6661 cacaaacagg gagttagcaa aacgcagcgc caacaggttc agcaccgttt ctttaccaag
     6721 atagtggtcg atacggtaaa cctggcactc ctcgaagtat tcgccaacct gatcattgat
     6781 ttcctgcgag gtcgccagcg acgtccccag cggtttctcc atgactacgc gtgccggttt
     6841 agcattcagt tttgcctcgc caagcccttt gcaaattgcg ccaaaagtgc tgggcggcat
     6901 ggcaaagtag ttaatggtga tacgattttt ttgatccagc atcgcgccga gacggttgaa
     6961 tgcagcagtg tcattgacat cgagattaca aaaatccaga cgtgcactca gggtgtccca
     7021 taaaccttca tcaatggttt ctttcatgaa agtttcgagc gcctcgcgga caactttggt
     7081 atatgccgct ttatcccagt cagcacgccc tacgccgata atccgggtgt ccgggttgag
     7141 ctgaccggct ttttccagtt gatacaggga aggcagcaat ttacgacgcg caaggtcgcc
     7201 tttcgcgccg aaaatgacca ggtcacaggc ctgggctgtt tgcgttaccg ccatgtcatt
     7261 ctccttaagt taactaaccc ggtacttaag ccagggtata cttgtaattt tcttacggtg
     7321 cactgtactg cttttacgag cttgcgaaaa ctgtaaacgc ttatccaccc gtgcgattac
     7381 gggaaaagcg cgcaaagtgc ggcaaaactg ataaaaaaat catcgttttc cattcggtaa
     7441 aaatctgaca ctgatcatgt tatgaaaaaa aataacaact tttttatctg cttttgtcat
     7501 taacacggca cacaggcgta atatctgaca aaactgcatt tcgatttctt tcagtgcgga
     7561 aatcgtcatt acccgtgagt ctctttacat catgaatatg ctggaaaaaa tccagtctca
     7621 gctggaacat ttgagcaaat cagagcgcaa agttgccgag gtcattctgg cttcgcccga
     7681 taacgcgatc cattcgagta ttgctgctat ggcactggaa gccaatgtta gcgaaccgac
     7741 ggtgaatcgt ttctgtcgca gcatggacac gcgcggtttt cctgatttta aacttcatct
     7801 ggcacagagt ctggcgaatg gcactcccta tgttaatcgc aatgtcaatg aagatgacag
     7861 cgttgaatca tacacaggga aaatatttga gtccgcaatg gcaacgcttg atcatgtccg
     7921 tcattcactg gataaatctg ccatcaaccg cgccgtcgac ttgctcactc aggcaaaaaa
     7981 aatcgccttt ttcggattag gctcttcagc cgccgttgcc cacgatgcga tgaataagtt
     8041 ctttcgtttt aatgttccgg tggtgtactc cgatgatatc gtgctgcaac gcatgagttg
     8101 tatgaattgt agcgacggag acgtggtggt gctgatttct cacactggaa gaacaaaaaa
     8161 tctggtcaag ctggcgcagc tggctcgcga aaacgacgca atggtgattg ccctcacctc
     8221 tgcgggtacc ccgctcgccc gggaagcaac gctggcaatt accctcgacg taccggaaga
     8281 tactgacatt tatatgccca tggtttctcg acttgcacag ctgaccgtga tagatgtgct
     8341 ggcgacagga tttactttgc gacgcggtgc aaaattcaga gataacttga agcgggtcaa
     8401 ggaagcgctg aaggaatcgc gttttgataa gcagttactt aatttaagtg acgatcgcta
     8461 aaaacgactg tcactgtcct aatcttatac gacatccgaa tgagattaat ttatcgccat
     8521 cgcggcgtta tttcattcgg atttcatgtt caagcaacac ctggttgttt cagtcaacgg
     8581 agtattacat gtccagaagg cttcgcagaa caaaaatcgt taccacgtta ggcccagcaa
     8641 cagatcgcga taataatctt gaaaaagtta tcgcagcggg tgccaacgtt gtacgtatga
     8701 acttttctca cggctcgcct gaagatcaca aaatgcgcgc ggataaagtt cgtgagattg
     8761 ccgcaaaact ggggcgtcat gtggctattc tgggtgacct ccaggggccc aaaatccgtg
     8821 tatccacctt taaagaaggc aaagttttcc tcaatattgg ggataaattc ctgctcgacg
     8881 ccaacctggg taaaggtgaa ggcgacaaag aaaaagtcgg tatcgactac aaaggcctgc
     8941 ctgctgacgt cgtgcctggt gacatcctgc tgctggacga tggtcgcgtc cagttaaaag
     9001 tactggaagt tcagggcatg aaagtgttca ccgaagtcac cgtcggtggt cccctctcca
     9061 acaataaagg tatcaacaaa cttggcggcg gtttgtcggc tgaagcgctg accgaaaaag
     9121 acaaagcaga cattaagact gcggcgttga ttggcgtaga ttacctggct gtctccttcc
     9181 cacgctgtgg cgaagatctg aactatgccc gtcgcctggc acgcgatgca ggatgtgatg
     9241 cgaaaattgt tgccaaggtt gaacgtgcgg aagccgtttg cagccaggat gcaatggatg
     9301 acatcatcct cgcctctgac gtggtaatgg ttgcacgtgg cgacctcggt gtggaaattg
     9361 gcgacccgga actggtcggc attcagaaag cgttgatccg tcgtgcgcgt cagctaaacc
     9421 gagcggtaat cacggcgacc cagatgatgg agtcaatgat tactaacccg atgccgacgc
     9481 gtgcagaagt catggacgta gcaaacgccg ttctggatgg tactgacgct gtgatgctgt
     9541 ctgcagaaac tgccgcaggg cagtatccgt cagaaactgt tgcagccatg gcgcgcgttt
     9601 gcctgggtgc ggaaaaaatc ccgagcatca acgtttctaa acaccgtctg gacgttcagt
     9661 tcgacaatgt ggaagaagct attgccatgt cagcaatgta cgcagctaac cacctgaaag
     9721 gcgttacggc gattattacc atgaccgaat cgggtcgtac cgcgctgatg acctcccgta
     9781 tcagctctgg tctaccaatt ttcgccatgt cgcgccatga acgtacgctg aacctgactg
     9841 ctctctatcg tggcgttacg ccggtgcact ttgatagcgc taatgacggc gtagcagctg
     9901 ccagcgaagc ggttaatctg ctgcgcgata aaggttactt gatgtctggt gacctggtga
     9961 ttgtcaccca gggcgacgtg atgagtaccg tgggttctac taataccacg cgtattttaa
    10021 cggtagagta atctcacctg ccccggccgc tgatggccgg ggtatttagc aacacataaa
    10081 ttaggactac ttattcaatc caatcataat cacagccccc tgtaaaatga atacagggat
    10141 agcctgaatg gagatctaaa tagcttgcaa gacgtcgcat acccgcttcc tctgcaacac
    10201 tatgtccaat aactgccatc ggtaagccac tatctttgga gtattgtgtc tgcacccatg
    10261 ttttaattga atcgttaatc gtaatataat aatcagcctg atattccata tattgtattg
    10321 gatcacaaaa acagcctgcc ccaatgccaa cagttctgac tactctggct ttatctccat
    10381 aaaattgaat gccaggaaga ttatatattt tcaaattttt ggcaaaacgt ttggtaatgt
    10441 taatggcact gtcaggttct atagcatata cacagtacat ctcatcagaa gcaacaatat
    10501 ttgtaacatc cagttctaac tgctgagcca aagccttaga cattccgaac gtaggctctc
    10561 gatccatgac atcatggcaa cgaatgatta ccaaattatt tttatgcaaa aactcctttt
    10621 tttgctcaat tatttttaaa taactgagtt caccgcgagt ataatccatt atttttctgg
    10681 cccatgaaaa ctcaagatcg tcaccctcca gatcagcata agaataaaat gtagtctcat
    10741 gtgtaataat gatattgaca ccttcaaaaa cagcctttct taaaacatcc attgaggcaa
    10801 tccagcaggt cccaatttta ttaataagtg tcgcctcagc accaaaaata attttatcaa
    10861 ctgttggttg cgaaacagca accattgaat ttaaaaaaca attaagatcc gcggctgttt
    10921 taatatgatg cattcaacat ccttcacagg tttcatcagc aataaaataa tttcaacatt
    10981 tctgggaaac gttttgccca tgcagactca gagtgggtat cacctcccca taaatgataa
    11041 tctatagtta cattgcgttg tttacggaga ctcacgcata atttttcagc accggaaata
    11101 tagacttcag gaaagtcttc gcgcatacca ctggtttcct gcgtaccgac atcgagatat
    11161 acagtaagat cttcaacgat gttgttttcc tgaataaaat tcagcattgc gctgtcattg
    11221 aaccatagtg ccggcgaaaa aacgccaact tttgaaaaaa cgtcctgacg aagaattgcg
    11281 gcaaacaaac tgatgtacgc acccatagaa ctacctgcta tcgctgtatt attacgatct
    11341 gggagagttc taaaattact gtcaacatag ttcttgagcg tattcacaat aaacgccttt
    11401 tcctccacta taatccacag cagggtccca gccaggtaag ggaaaagatg tgtttcgcgg
    11461 ccatggagaa tactcatcca tacggctgaa tttaccatga gacgatgcgt tatcaatccc
    11521 cacaatgata acaccgtcgt attgtgaatt tgagaaaaaa gcatctaccg cctcaggtat
    11581 atcccataca tgtggaccaa aagatacaga tttatcaaat aaattttgcc catcgtgcat
    11641 atatattaca gggtaactga tatcagattc ataatagaac gcaggcagta atattcttat
    11701 ttcgcga
//
LOCUS       DAJVUN010000126        11606 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.126, whole genome shotgun sequence.
ACCESSION   DAJVUN010000126 DAJVUN010000000
VERSION     DAJVUN010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11606
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.126"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(21..1385)
                     /gene="mnmE"
                     /locus_tag="OQQ76_002894"
     CDS             complement(21..1385)
                     /gene="mnmE"
                     /locus_tag="OQQ76_002894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HCS1969322.1"
                     /translation="MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPR
                     YADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPG
                     LRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV
                     EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMK
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE
                     ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR
                     NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH
                     LQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSF
                     CIGK"
     gene            complement(1491..3137)
                     /gene="yidC"
                     /locus_tag="OQQ76_002895"
     CDS             complement(1491..3137)
                     /gene="yidC"
                     /locus_tag="OQQ76_002895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HCS1969323.1"
                     /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA
                     GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET
                     SPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT
                     FTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPPHLDTGSSNFALHTF
                     RGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT
                     ANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW
                     FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKTQYTSMAKMRMLQPKIQA
                     MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP
                     FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW
                     FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS"
     gene            complement(3140..3397)
                     /gene="yidD"
                     /locus_tag="OQQ76_002896"
     CDS             complement(3140..3397)
                     /gene="yidD"
                     /locus_tag="OQQ76_002896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HCS1969324.1"
                     /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA
                     LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH"
     gene            complement(3361..3720)
                     /gene="rnpA"
                     /locus_tag="OQQ76_002897"
     CDS             complement(3361..3720)
                     /gene="rnpA"
                     /locus_tag="OQQ76_002897"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014172301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HCS1969325.1"
                     /translation="MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGH
                     PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS
                     EALEKLWRRHCRLARGS"
     gene            complement(3737..3877)
                     /gene="rpmH"
                     /locus_tag="OQQ76_002898"
     CDS             complement(3737..3877)
                     /gene="rpmH"
                     /locus_tag="OQQ76_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HCS1969326.1"
                     /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV
                     SK"
     gene            complement(4107..4187)
                     /locus_tag="OQQ76_002899"
     CDS             complement(4107..4187)
                     /locus_tag="OQQ76_002899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969327.1"
                     /translation="MTIDKNWLNRSNKDLGRSLRFTHQPV"
     gene            4484..5887
                     /gene="dnaA"
                     /locus_tag="OQQ76_002900"
     CDS             4484..5887
                     /gene="dnaA"
                     /locus_tag="OQQ76_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HCS1969328.1"
                     /translation="MLLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN
                     RFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVA
                     QTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADN
                     PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNA
                     IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIN
                     GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDILLPGEVAFFIAKRLRSNVR
                     ELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
                     DLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
                     SHDIKEDFSNLIRTLSS"
     gene            5892..6992
                     /gene="dnaN"
                     /locus_tag="OQQ76_002901"
     CDS             5892..6992
                     /gene="dnaN"
                     /locus_tag="OQQ76_002901"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006177590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HCS1969329.1"
                     /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL
                     TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG
                     RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF
                     ETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI
                     GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE
                     KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE
                     NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL"
     gene            6992..8065
                     /gene="recF"
                     /locus_tag="OQQ76_002902"
     CDS             6992..8065
                     /gene="recF"
                     /locus_tag="OQQ76_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HCS1969330.1"
                     /translation="MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY
                     TLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG
                     HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQ
                     RNAALRQVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF
                     SFQRGWEKETEYAEVLERNFERDRLLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL
                     LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA
                     EHVIDMSDENSKMFTVEKGKITD"
     gene            8094..10508
                     /gene="gyrB"
                     /locus_tag="OQQ76_002903"
     CDS             8094..10508
                     /gene="gyrB"
                     /locus_tag="OQQ76_002903"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HCS1969331.1"
                     /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET
                     EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY
                     EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR
                     DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS
                     QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT
                     RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
                     LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT
                     LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL
                     HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ
                     TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI
                     TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYK
                     GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFTTLMGDAVEPRRAFIEENALK
                     AANIDI"
     gene            10748..11146
                     /locus_tag="OQQ76_002904"
     CDS             10748..11146
                     /locus_tag="OQQ76_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HCS1969332.1"
                     /translation="MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGL
                     GAILSTWLSNQQSNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIID
                     ALSPQGEVSSQANNDLLSAGMELLKGKLFR"
     gene            11261..11575
                     /locus_tag="OQQ76_002905"
                     /pseudo
     CDS             11261..11575
                     /locus_tag="OQQ76_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418152.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
BASE COUNT         2747 a         3023 c         3199 g         2637 t
ORIGIN      
        1 atacggcttc gtaagcgcgg ttacttacca atacagaagc tggagaaaat ccgccccagc
       61 aggtcgtctg aagtaaattc cccggtgatt tcgcttaagt tctgctgtgc cagacgcaac
      121 tcttccgcca gcagttcacc tgcccaggct cccaacagtt gcgctttgcc ctgttgtaga
      181 tgttccgctg cctgttccag cgcctgtagg tggcgacgac gcgccaggaa gccgccttcc
      241 atgttggtgt caaagcccat gctctgtttg agatggttac gcagcacgtc cacgccttca
      301 ccagtccttg ctgagagacg aattaacgcg tgaccgttca cttcactcat tcccagcgtt
      361 tcgccggtga tatcggcttt attgcgcacc acggtgatcg gcagtttcgc tggcagacgg
      421 gcaataaatt ccggccagat ctctgccgga tccacggcgt ctgttgtggt gccatcgacc
      481 ataaacagca cgcggtcggc ctgttcaatt tcctgccacg cgcgctcgat accaatacgt
      541 tctacttcgt cactggcttc acgtagcccg gcggtatcga tgatatgcag cggcattccg
      601 tcaatgtgga tatgctcacg cagcacgtca cgcgtagttc cggcgatatc ggttacgatt
      661 gccgcttcac gccccgccag cgcgtttaac aggctcgatt taccggcgtt aggacgtccg
      721 gcaatcacca ctttcatccc ttcgcgcaac aaactaccct gacgtgcttc agcacgcact
      781 gcatcaagat cggcaataac gtcattgagc tgggcttcaa tttttccgtc ggagaggaaa
      841 tcgatctctt catcggggaa atcaattgcc gcttcgacgt aaatgcgcaa gtgggtgagg
      901 gcttctacca gatgattaac ccgtgcggag aatgcgcctt gcagcgagtt aagtgccgaa
      961 cgggccgcct gttccgaact ggcgtcgata agatcggcaa tcgcctcggc ctgggctaag
     1021 tcaagtttat cgttaagaaa cgcgcgttcg gaaaactcac cagggcgagc aatccgcagg
     1081 ccgggaatgg tcagaatgcg ttttaacagc aggtcgagga tcaccggacc gccatgacct
     1141 tgcagttcca gcacatcttc gccagtgaac gagttcgggc cagggaacca tagcgcaatc
     1201 ccctgatcga gcacgctgcc gtcggcgtct ttaaacggaa gataatcggc gtagcgcggc
     1261 ttaggcagtt tacccagcac ggtttcggca acttcacggg ctttgaagcc ggagatgcgc
     1321 aggatgccaa cgccgccacg tcccggaggc gtggcctggg ctacgatagt gtcattatcg
     1381 ctcatgatgt tcctgttgct ttgtgtggcg gatgcgcggt gcttatccgc cctacgaaaa
     1441 gaaaaaaggc ggtcaactga ccgcccttat tttagcgaaa actcaccgaa tcaggatttt
     1501 ttcttctcgc ggctatgcag gccacgtttt tccagaccac ggtaaatcag ctgctgctga
     1561 ataatggtta ccaggttgct gacgatatag tacagcacca gacctgacgg gaaccacagg
     1621 aagaacacgg tgaagatgac cggcataaag gtcatgatct tctgctgcat cgggtcggtc
     1681 actgtggtcg gcgacatctt ctgaatgaag aacatcgtta cgcccatcag gatcggcagg
     1741 atgtagtacg ggtcctgtgc tgacaggtcg tggatccaca gtgcaaacgg tgcctgacgc
     1801 agttcaacgg aacccatcag catgtagtac aacgccagga agattggcat ctggatcagc
     1861 agcgggaagc agccgcccag cgggttaacc ttctcagctt tgtacagcgc catcatttcc
     1921 tggctgatac gctgtttgtc atcgcccaga cgctcacgca ttgcctgaat cttcggctgc
     1981 agcatacgca tcttcgccat ggaggtgtac tgcgttttgg tcagagggta catgatgcca
     2041 cgaacgataa aggtgatgat gataatggag aagccccagt tacccacaaa gctatggatc
     2101 catttcagca gtttgaacag cggctgagag atgaaccaca accaaccgta atcaacggtc
     2161 agatccaggt gcggagcaac agctgccatt ttgtcctgga tttccgggcc aacccacagg
     2221 gtgctgttca tcgcgccagt ctgaccaggc tgaaccagta ccggctgaga tttatagccg
     2281 atagcggcga tgccgttacc cagattagcg gtatagaagt tgttggtacc atcgttatgc
     2341 gggatccacg ccgtcgcgaa atactgttgc agcattgcca cccaaccacc tttcgaagag
     2401 atgttcaggt tttcgttatc ggcaatggta tcgaacttgt atttctcgta cttctcgtca
     2461 ggcgtggagt acgccgcgcc gcggaaggtg tgcagtgcga agttgctgct tccggtatcg
     2521 agatgcggtg gcagagtgat ggattgcttc aactgaccaa aggtggagat ttccagcggt
     2581 ttctcgccag cgttctgcac gttgtagttg acgttgacag cgtaatcacc acgtttcagg
     2641 acaaacgttt tggtaaacgt gttgcctgcc gcgtcggtat acgtcatcgg cacctgcagt
     2701 tcgttttgac cttcagccag cacataagcg tctttttcaa cgttatacag cggacgcggg
     2761 ccgttagccg ggttatccgg gccatcacga ccggtcagac cgctctgtgc ctgataaata
     2821 aactgcggtg aagtttccag cagctggaac ggctgggtag agttcagctc tttcgggtaa
     2881 gcaggcagca gagcttgctc aacatcacca ccacgggtgt tgatggtcag atcaagcacg
     2941 tcggtcttaa ccgagatcag tttcccctgg ccactggccg gtacgccctg gtcggcggcg
     3001 ctacccgctg cggtggtcgt tgtctgcgtg gtctgttggg cctgaggttg cgggttttta
     3061 tcctgctccc aggcttgcca gatcatgaaa gacacgaaca gcaaagcgat gactaaaaga
     3121 ttgcgttgcg aatccatcgt tagtgttctc tggtatcaaa tggtccgggc gggacgggat
     3181 cgtcaccacc agggtgtaaa gggtggcatt ttaatacgcg tttcaccgtc aaccaactgc
     3241 cttttatcac tccaaacctg cgcaatgcct caattccgta gcttgaacag gttggagtga
     3301 aacgacaatg cggcccgagt agcggactaa tcaggcgttg atagacccga atgagggcta
     3361 tcaggacccg cgagccaggc gacagtggcg gcgccataat ttttccaacg cttccgagag
     3421 agcacggtta tcgaggtcgg caaccccttt tttcgccacc accacgaaat ccatagccgg
     3481 gagttcatgt tggcgcagac ggaagctttc acgcgtcaga cgtttaatcc gattgcgttc
     3541 atgggcgcgt cgaacgtttt tcttggcgac tgtaagaccg atacggggat gccccagcga
     3601 attcaggcgg ccgagaatgg taatttgcgg cgtgccagcc cgttgtggct gctggaagac
     3661 gaatgtgaat tgactgggag ttaacaagcg taactccctg ggaaatgcga gcttaaccac
     3721 tcaggggtta gctttattac ttagaaacgg tcagacgagc gcggccttta gcacgacgac
     3781 gtgccagaac ctgacgacca tttttagtag ccatacgagc gcggaagccg tgagaacggt
     3841 tgcgcttcag tacagacggt tgaaaagtgc gtttcatggc gatttctacc taaacttgaa
     3901 taaattcaat ggctttattg gatatccgcc gaaaaatgaa acgatggaca ccgaagccat
     3961 gggtgattaa agaggccgga ttgtaataat tgtacactcc ggagtcaatt ctctttcctt
     4021 atttaccgcg cttttccgca ccttttcgca gggaaaatgt acgacctcac accagtggaa
     4081 accagcatgg cgcgccgggt ggaggattat acgggctgat gggtaaagcg caaggatcgt
     4141 cctagatctt tattagatcg attaagccaa tttttgtcta tggtcattaa atttttcaat
     4201 atgcggcgta aatcatgccc gcctcgcggc aggatcgttt acacttagcg agttctggaa
     4261 agtcctgtgg ataaatcggg aaaatctgtg agaaacagaa gatctcttgc gcagtttagg
     4321 ctatgatccg cggtcccgat cgttttgcag gatcttgatc gggcatataa ccgcagacag
     4381 cggttcgtgc gtcaccctca agcagggtct tttcgacgta cgtcaacaat catgaatgtt
     4441 tcagccttag tcattatcga cttttgttcg agtggagtcc gccgtgttac tttcgctttg
     4501 gcagcagtgt cttgcccgat tgcaggatga gttaccagcc acagaattca gtatgtggat
     4561 acgcccattg caggcggaac tgagcgataa cacgctggcc ctgtacgcgc caaaccgttt
     4621 tgtcctcgat tgggtacggg acaagtacct taataatatc aatggactgc taaccagttt
     4681 ctgcggagcg gatgccccac agctgcgttt tgaagtcggc accaaaccgg tgacgcaaac
     4741 gccacaagcg gcagtgacga gcaacgtcgc ggcccctgca caggtggcgc aaacgcagcc
     4801 gcaacgtgct gcgccttcta cgcgctcagg ttgggataac gtcccggccc cggcagaacc
     4861 gacctatcgt tctaacgtaa acgtcaaaca cacgtttgat aacttcgttg aaggtaaatc
     4921 taaccaactg gcgcgcgcgg cggctcgcca ggtggcggat aaccctggcg gtgcctataa
     4981 cccgttgttc ctttatggcg gcacgggtct gggtaaaact cacctgctgc atgcggtggg
     5041 taacggcatt atggcgcgca agccgaatgc caaagtggtt tatatgcact ccgagcgctt
     5101 tgttcaggac atggttaaag ccctgcaaaa caacgcgatc gaagagttta aacgctacta
     5161 ccgttccgta gatgcactgc tgatcgacga tattcagttt tttgctaata aagaacgatc
     5221 tcaggaagag tttttccata ccttcaacgc cctgctggaa ggtaatcaac agatcattct
     5281 cacctcggat cgctatccga aagagatcaa cggcgttgag gatcgtttga aatcccgctt
     5341 cggttgggga ctgactgtgg cgatcgaacc gccagagctg gaaacccgtg tggcgatcct
     5401 gatgaaaaag gccgacgaaa acgacattct tttgccgggc gaagtggcgt tctttatcgc
     5461 caagcgtcta cgatctaacg tacgtgagct ggaaggggcg ctgaaccgcg tcattgccaa
     5521 tgccaacttt accggacggg cgatcaccat cgacttcgtg cgtgaggcgc tgcgcgactt
     5581 gctggcattg caggaaaaac tggtcaccat cgacaatatt cagaagacgg tggcggagta
     5641 ctacaagatc aaagtcgcgg atctcctttc caagcgtcga tcccgctcgg tggcgcgtcc
     5701 gcgccagatg gcgatggcgc tggcgaaaga gctgactaac cacagtctgc cggagattgg
     5761 cgatgcgttt ggtggtcgtg accacacgac ggtgcttcat gcctgccgta agatcgagca
     5821 gttgcgtgaa gagagccacg atatcaaaga agatttttca aatttaatca gaacattgtc
     5881 atcgtaaacc tatgaaattt accgtagaac gtgagcattt attaaaaccg ctacaacagg
     5941 tgagcggtcc gttaggtggt cgtcctacgc taccgattct cggtaatctg ctgttacagg
     6001 ttgctgacgg tacgttgtcg ctgaccggta ctgatctcga gatggaaatg gtggcacgtg
     6061 ttgcgctggt tcagccacac gagccaggag caacgaccgt tccggcgcgc aaattctttg
     6121 atatctgccg tggtctgcct gaaggcgcgg aaattgccgt gcagctggaa ggtgaacgga
     6181 tgctggtgcg ctccgggcgt agccgttttt cgctgtctac cctgccagcg gcggatttcc
     6241 cgaacctcga tgactggcag agcgaagtcg aatttaccct gccgcaggcg acgatgaagc
     6301 gtctgattga agcgacccag ttttcgatgg cgcatcagga tgttcgctat tacttaaacg
     6361 gtatgctgtt tgaaaccgaa ggcgaagaac tgcgcaccgt agcgaccgat ggtcaccgtc
     6421 tggcagtctg ttcaatgcca attggtcaat ctttgccaag ccattcggtg atcgtgccgc
     6481 gtaaaggcgt gattgaactg atgcgtatgc tcgacggcgg cgacaatccg ctgcgcgtgc
     6541 agattggcag caataacatt cgtgcccacg ttggcgactt tatcttcacc tccaaactgg
     6601 tggatggtcg cttcccggat taccgccgcg ttctaccgaa gaacccggac aaacatctgg
     6661 aagctggctg cgatctgctc aagcaggcgt ttgcccgtgc ggcaattctc tctaacgaga
     6721 aattccgcgg cgtacgtctt tatgtcagcg aaaaccagct gaaaatcact gccaacaacc
     6781 cggaacagga agaagcggaa gagatcctcg acgttaccta tagcggtgcg gagatggaaa
     6841 tcggcttcaa cgtcagctat gtgctggatg ttctgaacgc gctgaaatgc gaaaacgtcc
     6901 gcatgatgct gaccgattcg gtttccagcg tgcagattga agatgcggcc agccagagcg
     6961 cggcttatgt tgtcatgcca atgagactgt aatgtccctc acccgcttgt tgatccgcga
     7021 tttccgcaat atcgaaaccg cggatctcgc cttatctccc ggctttaact ttctggtagg
     7081 tgccaacggc agtggcaaaa ccagcgtgct ggaagccatc tatacgctcg gccatggtcg
     7141 ggcgtttcgc agtttgcaga ttggtcgcgt cattcgccat gagcaggagg catttgttct
     7201 ccatgggcga ttacagggcg aagagcgcga gacggcgatt ggcttaacca aagacaaaca
     7261 aggcgacagc aaagtccgca tcgacggtac tgacgggcat aaagtcgcgg agctggcgca
     7321 cctgatgccg atgcagctga taacgccaga agggtttact ttactcaacg gcggccccaa
     7381 atacagaaga gcatttctcg actgggcatg ctttcacaac gaacccggat ttttcaccgc
     7441 ctggagcaat ctcaagcgat tgctcaagca gcgcaatgcg gcgctgcgcc aggtgacacg
     7501 ttacgaacag ctacgcccgt gggataaaga gctgatcccg ctggcggagc aaatcagcac
     7561 ctggcgcgcg gagtatagcg ccggtatcgc ggctgatatg gccgatactt gtaagcaatt
     7621 tctccctgag ttttctctga ctttctcttt ccagcgcggc tgggagaaag agacagaata
     7681 tgctgaggtg ctggaacgta attttgaacg cgatcgcctg ctaacctaca ccgcgcatgg
     7741 cccgcataaa gcggacttac gcattcgcgc cgacggtgcg ccggtggaag ataccttatc
     7801 gcgtgggcag cttaagctgt tgatgtgcgc cttacgtctg gcgcaaggag agttcctcac
     7861 ccgtgaaagc gggcggcggt gtctctacct gatagatgat tttgcctctg agcttgatga
     7921 tgagcgtcgc gggctgcttg ccagccgctt aaaagcgacg caatcacagg tctttgtcag
     7981 cgcgatcagt gctgaacacg ttatagacat gtcggacgaa aattcgaaga tgtttaccgt
     8041 ggaaaagggt aaaataacgg attaacccaa gtataaatga gcgagaaacg ttgatgtcga
     8101 attcttatga ctcctccagt atcaaagtcc tgaaagggct ggatgcggtg cgtaagcgcc
     8161 cgggtatgta tatcggcgac acggatgacg gcaccggtct gcaccacatg gtattcgagg
     8221 tggtagataa cgctatcgac gaagcgctcg cgggtcactg taaagaaatt atcgtcacca
     8281 ttcacgccga taactctgtc tctgtacagg atgacgggcg tggcattccg accggtattc
     8341 acccggaaga gggcgtatcg gcggcggaag tgatcatgac cgttctgcac gcaggcggta
     8401 aatttgacga taactcctat aaagtgtccg gcggtctgca cggcgttggt gtttcggtag
     8461 taaacgccct gtcgcaaaaa ctggagctgg ttatccagcg cgagggtaaa attcaccgtc
     8521 agatctacga acacggtgta ccgcaggctc cgctggcggt taccggcgag actgaaaaaa
     8581 ccggcaccat ggtgcgtttc tggcccagcc tcgaaacctt caccaatgtg accgagttcg
     8641 aatatgaaat tctggcgaaa cgtctgcgtg agttgtcgtt cctcaactcc ggcgtttcca
     8701 ttcgtctgcg cgacaagcgt gacggcaaag aagaccactt ccactatgaa ggcggcatca
     8761 aggcgttcgt tgaatatctg aacaagaaca aaacgccgat ccatccgaat atcttctact
     8821 tctccaccga aaaagacggt attggcgtcg aagtggcgtt gcagtggaac gatggcttcc
     8881 aggaaaacat ctactgcttt accaacaaca ttccgcagcg tgacggcggt actcacctgg
     8941 caggcttccg tgcggcgatg acccgtaccc tgaacgccta catggacaaa gaaggctaca
     9001 gcaaaaaagc caaagtcagc gccactggtg acgatgcgcg tgaaggcctg attgcggtcg
     9061 tttccgtaaa agtgccggac ccgaaattct cctcccagac caaagacaaa ctggtttctt
     9121 ctgaggtgaa atcggcggtt gaacagcaga tgaacgaact gctggcagaa tacctgctgg
     9181 aaaacccaac cgacgcgaaa atcgtggttg gcaaaattat cgatgctgcc cgtgcccgtg
     9241 aagcggcgcg tcgcgcgcgt gaaatgaccc gccgtaaagg tgcgctcgac ttagcgggcc
     9301 tgccgggcaa actggcagac tgccaggaac gcgatccggc gctttccgaa ctgtacctgg
     9361 tggaagggga ctccgcgggc ggctctgcga agcaggggcg taaccgcaag aaccaggcga
     9421 ttctgccgct gaagggtaaa atcctcaacg ttgagaaagc gcgcttcgat aagatgctct
     9481 cttctcagga agtggcgacg cttatcaccg cgcttggctg tggtatcggt cgtgacgagt
     9541 acaacccgga caaactgcgt tatcacagca tcatcatcat gaccgatgcg gacgtcgacg
     9601 gctcgcacat tcgtacgctg ctgttgacct tcttctatcg tcagatgccg gaaatcgttg
     9661 aacgcggtca cgtctacatc gctcagccgc cgctgtacaa agtgaagaaa ggcaagcagg
     9721 aacagtacat taaagacgac gaagcgatgg atcagtacca gatctctatc gcgctggacg
     9781 gcgcaacgct gcacaccaac gccagcgcac cggcattggc tggcgaagcg ttagagaaac
     9841 tggtgtctga gtacaacgcg acgcagaaaa tgatcaaccg catggagcgt cgttatccga
     9901 aagcaatgct gaaagagctt atctatcagc cgacgctgac ggaagccgac ctctctgatg
     9961 agcagaccgt tacccgctgg gtgaacgcgc tggtcagcga actgaacgac aaagaacagc
    10021 acggcagcca gtggaagttt gatgtccaca ccaatgccga acaaaacctg ttcgagccga
    10081 ttgttcgcgt gcgtacccac ggtgtggata ctgactatcc gctggatcac gaatttatca
    10141 ctggtggcga atatcgtcgt atctgcacgc tgggtgagaa actgcgtggc ttgctggaag
    10201 aagatgcatt tatcgaacgt ggcgagcgtc gtcagccggt agccagcttc gagcaggcgc
    10261 tggactggct ggtgaaagag tctcgtcgcg gtctctccat ccagcgttat aaaggtctgg
    10321 gcgagatgaa cccggaacag ctgtgggaaa ccaccatgga cccggaaagt cgtcgtatgc
    10381 tgcgcgttac cgttaaggat gcgattgccg ctgacctgtt gttcaccacg ctgatgggcg
    10441 acgccgtaga accgcgtcgt gcgtttattg aagagaacgc cctgaaagcg gcgaatattg
    10501 atatttaatg gcgttaacca tgcgagcgtg cctgatgcgc tacgcttatc aggcctacga
    10561 aaatcttgca atgtattgaa ttttaatgat tttgtaggcc aggtaagacg ttaacgccgc
    10621 atccggcaag aagctataaa aaaagggcgg agatcatctc cgcccttttt atttctgcaa
    10681 tccgcaatta tcatcccgca gatctatact ttttgggtca acacgtaacg ctttacaggt
    10741 gattatcatg gggctttttg atgaagttgt cggtgccttt ctgaaaggcg atgcggggaa
    10801 atatcaggca attttaagtt gggttgagga gcagggcggc attcaggtgc tgctggaaaa
    10861 actgcaaagt ggcggcttag gggccattct ctcaacctgg ttgagtaatc agcagagcaa
    10921 tcaatcagtt agcggcgagc aactggaatc ggcgctcggc acaaatgcgg tgtccgatct
    10981 cgggcaaaaa cttggcgtgg ataccagtac ggcttccagt ttactggcag aacaattgcc
    11041 gaagattatt gatgcgctct caccgcaagg tgaagtgtct tcacaagcca ataacgatct
    11101 gctttccgca ggtatggaac tgctgaaagg gaaactcttc cgctaagcaa atggggagca
    11161 tgcaacccgc gttgcatccc ccttttccct cgggtgttgt actgattttt gagcggaatc
    11221 gcgttagcat gggtcaggaa ctaatctacc tggggaactc atggctatca aactcattgc
    11281 tatcgatatg gatggcaccc ttctgctgcc cgatcacacc atttcacccg ccgttaaaaa
    11341 tgcgattgcc gcagctcgcg cccgtggcgt gaatgtcgtg ctaacgacgg gtcgccctta
    11401 tgcaggcgtt cacaactacc tgaaagagct gcatatggaa cagccgggcg actactgcat
    11461 tacttataac ggcgcgctgg tacagaaggc cgctgatggt agcaccgtgg cgcaaactgc
    11521 tctcagttat gacgactatc gtttcctgga aaaactctct cgcgaagtcg gttcacgtat
    11581 aggaaattga aaaactaagc gatacc
//
LOCUS       DAJVUN010000127        11066 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.127, whole genome shotgun sequence.
ACCESSION   DAJVUN010000127 DAJVUN010000000
VERSION     DAJVUN010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11066
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.127"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(62..211)
                     /locus_tag="OQQ76_002906"
                     /pseudo
     CDS             complement(62..211)
                     /locus_tag="OQQ76_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            488..1363
                     /locus_tag="OQQ76_002907"
     CDS             488..1363
                     /locus_tag="OQQ76_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001224622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HCS1969333.1"
                     /translation="MRKFILISMITLASVSLGACRQNVTIKQDAPGQKAFLIDGQIYD
                     LHSGKIISSSELLADLATARHLIIGEKHDNAEHHQIELWLIQNLLIQRPQGSVLLEML
                     TSDQQPRVNQVKCWLKDNPVVRDSRVQELLNWQKGWSWEMYGDIVMQLLRGPYPLLNA
                     NIGREQMLALYKKNEFPKGKKSTAPVVQEALRETIIAMHEGNLESQQLTSMLSVQQQR
                     DRYMARQLLSAPVPSLLIAGGYHASKSMGVPLHMEDLATGTHPVVLMLAEKGMNITVD
                     HADYVWFVAPDTTKR"
     gene            1371..2147
                     /locus_tag="OQQ76_002908"
     CDS             1371..2147
                     /locus_tag="OQQ76_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000981087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HCS1969334.1"
                     /translation="MMNILHFPQSVKWSSWFICSLLLHGLIFLTFIWRFSEVQPAMSP
                     APAIMLQWAEIIEAPSSPLSLPVGIAQQESAVTEEKQQTEDRQQRPVTEDSDATIEIT
                     RKKKSSDGEKKKTRPPRKIKAQTSDSNPTAVSSNAAPQALVESSRIAAPFNSDSTKRD
                     NSEASWESRVKGHLNRYKRYPGDARKRARTGTAVVTFTVNTEGTIVSSFLEISSETLS
                     LDREAIAVLERAQPLPKPPPEILEGGLFKVKMPITFKLKE"
     gene            2316..4577
                     /locus_tag="OQQ76_002909"
     CDS             2316..4577
                     /locus_tag="OQQ76_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001100765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS1969335.1"
                     /translation="MNVIKLAIGSGILLLSCGAYSQSISEKTNSDKKGAAEFSPLSVS
                     VGKTTSEQEALEKTGATSSRTTDKNLQSLDATVRSMPGTYTQIDPGQGAISVNIRGMS
                     GFGRVNTMVDGITQSFYGTSTSGTTAHGSTNNMAGVLIDPNLLVAVDVTRGDSSGSEG
                     INALAGSANMRTIGVDDVIFNGNTYGLRSRFSVGSNGLGRSGMIALGGKSDAFTDTGS
                     IGVMAAVSGSSVYSNFSNGSGINSKEFGYDKYMKQNPKSQLYKMDIRPDEFNSFELSA
                     RTYENKFTRRDITSDDYYIKYHYTPFSELIDFNVTASTSRGNQKYRDGSLYTFYKTSA
                     QNRSDALDINNTSRFTVADNELEFMLGSKLMRTRYDRTIHSAAGDPKANQESIENNPF
                     APSGQQDISALYTGLKVTRGIWEADFNLNYTRNRITGYKPACDSRVICVPQGSYDIDD
                     KEGGFNPSVQLSAQVTPWLQPFIGYSKSMRAPNIQEMFFSNSGGASMNPFLKPERAET
                     WQAGFNIDTRDLLVEQDALRFKALAYRSRIQNYIYSESYLVCSGGRKCSMAEVIGNDW
                     EGISDEYSDNMYIYVNSASDVIAKGFELEMDYDAGFAFGRLSFSQQQTDQPTSIASTY
                     FGAGDMTELPRKYMTLDTGVRFFDNALTLGTIIKYTGKARRLSPDFEQDEHTGAIIKQ
                     DLPQIPTIIDLYGTYEYNRNLTLKLSVQNLMNRDYSEALNKLNMMPGLGDESHPANSA
                     RGRTWIFGGDIRF"
     gene            4646..5821
                     /gene="senB"
                     /locus_tag="OQQ76_002910"
     CDS             4646..5821
                     /gene="senB"
                     /locus_tag="OQQ76_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterotoxin production-related protein TieB"
                     /protein_id="HCS1969336.1"
                     /translation="MNIFTLSKAPLYLLISLFLPTMAMAIDPPERELSRFALKTNYLQ
                     SPDEGVYELAFDNASKKVFAAVTDRVNREANKGYLYSFNSDSLKVENKYTMPYRAFSL
                     AINQDKHQLYIGHTQSASLRISMFDTPTGKLVRTSDRLSFKAANAADSRFEHLRHMVY
                     SQDSDTLFVSYSNMLKTAEGMKPLHKLLMLDGTTLALKGEVKDAYKGTAYGLTMDEKT
                     QKIYVGGRDYINEIDAKNQTLLRTIPLKDPRPQITSVQNLAVDSASDRAFVVVFDHDD
                     RSGTKDGLYIFDLRDGKQLGYVHTGAGANAVKYNPKYNELYVTNFTSGTISVVDATKY
                     SITREFNMPVYPNQMVLSDDMDTLYIGIKEGFNRDWDPDVFVEGAKERILSIDLKKS"
     gene            6280..6630
                     /locus_tag="OQQ76_002911"
     CDS             6280..6630
                     /locus_tag="OQQ76_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1969337.1"
                     /translation="MPSGRHTARIRTGHDSGTVSPFVHSTLSPLVPVYPVFITVIADH
                     DKPQPSGCLLESQGSLCPICRQRITHETGWNVHHKVKKVMGGGEELSNLVLLHPNCHR
                     QLHSCEAGSLKKGL"
     gene            6773..6994
                     /locus_tag="OQQ76_002912"
                     /pseudo
     CDS             6773..6994
                     /locus_tag="OQQ76_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(7015..7077)
                     /locus_tag="OQQ76_002913"
                     /pseudo
     CDS             complement(7015..7077)
                     /locus_tag="OQQ76_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
     gene            7528..8940
                     /gene="ospC1"
                     /locus_tag="OQQ76_002914"
     CDS             7528..8940
                     /gene="ospC1"
                     /locus_tag="OQQ76_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC1"
                     /protein_id="HCS1969338.1"
                     /translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
                     KNLKDSANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
                     LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
                     GICTKRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTKHHTVDFGANAYIIDHDSP
                     YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
                     LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
                     VKIREISLEEAVTASNYEEINKQVTNKKIALQTLFLSITNQKEDVALYILSNFEITRQ
                     DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
                     NAEMIKLLLKYGATSDNKYI"
     gene            complement(9044..9192)
                     /locus_tag="OQQ76_002915"
                     /pseudo
     CDS             complement(9044..9192)
                     /locus_tag="OQQ76_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            9268..10965
                     /gene="ospD3"
                     /locus_tag="OQQ76_002916"
     CDS             9268..10965
                     /gene="ospD3"
                     /locus_tag="OQQ76_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspD3"
                     /protein_id="HCS1969339.1"
                     /translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
                     SFLLNLNCQVTDHSGRLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
                     EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
                     NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
                     VDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
                     AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
                     ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
                     AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
                     LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
                     PNGVSGLIIAFQNRNFEAIKTYMEIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
BASE COUNT         3407 a         2356 c         2348 g         2955 t
ORIGIN      
        1 ggatgtgctg tttcagcctc gcgaccagct cacgctgtgt cagcgtttcc gtcgccgttt
       61 atcccgtttt gtggtccagg taacggaagc tcaggctcgc ccctccgttg taatgtgcca
      121 gccgggaggc cgctatcggc ggcttcttca gataacgacc caggtagcgc gccgtattcc
      181 tcccgccggc cgttttcttc gacatgtaca tcaggcgcgg aactcatcgg ggcgcgggaa
      241 tgaaatccca ttcagactcc ggatagattc aagcaagccc acttatcgtc aaaatcggtg
      301 ttgcaaaaac gggagtgacc atagatccgt tttccaagcg gaccccataa tatcggctgg
      361 taaacatcac tcgctagtgc attctttttg ttggtaatga taattattta catttattct
      421 ttgatgtttt atcataatta atgttttatc aataaatata tggaaatata ttgtttcaga
      481 tgggaatatg agaaagttca tccttatttc tatgataacg ttagctagtg ttagtctggg
      541 agcctgcaga cagaatgtca ccataaagca ggatgcgcca gggcagaaag ctttcctgat
      601 tgacgggcag atttacgatt tgcacagtgg caaaattatt tctagcagcg agcttttggc
      661 ggatcttgct accgctcgac atcttattat tggtgaaaaa cacgataatg ccgagcatca
      721 tcagattgag ctttggctta ttcaaaatct gctcatccag cgaccacagg ggagtgtgtt
      781 gcttgagatg ttgacgtcag accaacagcc ccgagttaac caagttaaat gttggctgaa
      841 agataatcct gtggttcgag atagccgtgt tcaggaacta cttaactggc aaaaagggtg
      901 gtcctgggag atgtatggcg acatcgtcat gcagctatta cgtgggcctt acccgctgct
      961 caatgccaac attggccggg agcagatgtt ggcactgtac aaaaaaaacg aatttcctaa
     1021 aggaaaaaaa tccactgcac ctgtggtaca agaagctctg cgtgaaacca tcatagctat
     1081 gcatgaaggc aaccttgaaa gccagcaact gacgtcaatg ctctctgttc agcagcagcg
     1141 ggatcgctac atggcccgcc agcttctgag tgccccggta ccgtcgttgt tgattgcagg
     1201 tggttatcac gcgtcaaaaa gcatgggcgt accgttacac atggaagatc ttgccaccgg
     1261 cacccatcca gtggtgttga tgcttgcaga aaaaggaatg aacatcacag tagatcatgc
     1321 tgactacgtg tggtttgtag cgccagatac aacaaaaagg taaaccatgg atgatgaata
     1381 ttctccactt cccacagtcg gtaaaatgga gcagctggtt tatctgttct ctactgcttc
     1441 atggactgat tttccttacg tttatctggc gtttttccga agttcagccc gctatgtctc
     1501 ctgcaccggc gatcatgctg caatgggcag aaattataga ggctccttct tctccacttt
     1561 cgcttccggt gggaatcgct caacaggagt ccgcagtgac agaagaaaag caacaaactg
     1621 aggacagaca acaacgtcct gtcactgaag acagtgatgc aaccattgaa ataactagga
     1681 agaaaaagtc atccgatgga gaaaagaaaa agacacgtcc acctcgtaag ataaaggctc
     1741 aaaccagcga cagcaacccc acagccgttt ccagtaatgc tgcacctcag gctctggtcg
     1801 aatcgtcccg tattgctgcg ccttttaaca gtgactcaac aaagcgagat aattctgagg
     1861 catcttggga aagcagagta aaaggccacc ttaaccgtta taaacgttac cctggcgatg
     1921 ccagaaaacg tgcacgaacc ggcacagccg ttgtgacttt taccgtaaac acggaaggca
     1981 ctattgtcag tagtttcttg gaaatctctt cagaaaccct ttctcttgac cgcgaagcta
     2041 ttgctgtttt agaacgcgct caaccacttc ccaaaccacc gcctgaaata ttggagggag
     2101 gattatttaa agtaaaaatg ccgattacct ttaagttgaa ggagtaaagg gataattggc
     2161 cgttcaagtt catttaactg aaatttaatt ttcattttta tgctgaacat tttatcaaac
     2221 ttttccactg tcgaaaaaat caaaaagaca gtagatcata attaataaac aaatagttat
     2281 acttatcttt attaatatta tatccaagga aatttatgaa cgttataaaa ctggctatcg
     2341 gctcaggcat attattgctc agctgcggtg cttactcaca atccatcagt gaaaaaacta
     2401 attccgacaa aaaaggagcg gcagaattca gtccgctcag cgtttctgtc gggaagacga
     2461 ccagtgagca ggaagctctc gagaaaacag gcgcgaccag ttcccggaca acggacaaaa
     2521 acctgcaatc acttgacgca acagtgcgta gtatgcctgg tacttatact caaatagatc
     2581 ctggtcaggg agcaatcagt gtgaatattc gaggcatgag cggatttggt cgtgtaaaca
     2641 ctatggtcga tggtattacc cagagttttt acggaacctc tacctccgga acaacggcgc
     2701 atggttcaac taacaatatg gctggcgtac ttatagatcc taacttactg gtagcagttg
     2761 atgttacacg cggtgacagc agtggctctg aagggatcaa cgcccttgcc ggtagtgcaa
     2821 atatgcgtac tattggcgtt gacgatgtaa tatttaacgg taatacatat ggccttcgtt
     2881 cacgtttctc tgtcggtagt aatgggctgg gacgcagcgg aatgatcgcc cttggtggaa
     2941 aaagcgacgc ttttacggat acgggaagca ttggcgttat ggctgctgtg agcggcagtt
     3001 ctgtgtactc taatttctca aatggttctg gaattaacag caaagagttt ggttatgata
     3061 aatatatgaa gcagaacccc aaatcccaac tgtataaaat ggatatcaga ccagacgaat
     3121 ttaacagctt cgaactttcc gctcgaacct atgaaaataa atttacacgt cgtgatataa
     3181 ccagtgacga ctattacatt aaatatcatt acaccccttt ttctgaatta attgacttta
     3241 acgtaacggc cagtaccagt cgcggtaatc aaaagtatcg tgatggctcg ctgtatactt
     3301 tctacaaaac ctcagcgcaa aatcgttctg acgcgctgga tatcaacaat accagccggt
     3361 tcactgtcgc ggacaatgaa ctggagttta tgctgggcag caaactgatg cgtacccgct
     3421 atgaccggac cattcactca gcggcgggcg acccgaaagc gaaccaggaa tcgatcgaga
     3481 acaatccgtt cgcaccctcc ggccagcagg atatttcagc gctgtatacc gggctgaagg
     3541 ttacgcgcgg catctgggag gcagatttca atctcaacta cacacgtaac aggatcacag
     3601 ggtacaagcc cgcctgcgat tcacgcgtta tctgcgtgcc acagggtagc tacgatattg
     3661 acgataaaga gggtggcttc aacccttcag ttcagctttc tgctcaggta acaccatggc
     3721 ttcagccgtt cattggctac agcaaatcca tgcgtgcccc gaacatccag gagatgttct
     3781 tctctaattc aggaggcgca tccatgaacc cattcctgaa gcctgaacgt gcagaaacct
     3841 ggcaggcggg ttttaacatt gataccagag atttactggt cgaacaggat gccctgcgct
     3901 ttaaggctct ggcgtaccgc agcaggatcc agaactacat ctacagcgag tcttatctgg
     3961 tttgttctgg aggtcgtaaa tgcagtatgg ctgaggtgat tggcaatgac tgggagggca
     4021 ttagcgatga atacagcgac aatatgtaca tctacgttaa ctcggcaagc gacgttattg
     4081 caaagggctt cgaactggag atggattatg atgcaggttt tgcttttggc cgactctctt
     4141 tcagccagca gcaaacagac cagccaacct ccatcgccag cacctacttt ggcgcagggg
     4201 atatgaccga actgcccaga aaatacatga cgctggatac tggtgttcgc ttcttcgata
     4261 acgcgttgac cctgggcact atcataaaat acacaggcaa ggctcgtcgc ctgtcgcctg
     4321 attttgagca ggacgaacat accggcgcaa taatcaaaca ggatttgccg cagatcccaa
     4381 cgattatcga tctctatggt acttacgagt acaaccgcaa cctgacactg aaactttcgg
     4441 tacaaaacct gatgaacaga gattattcgg aggcgctgaa taagctcaac atgatgccag
     4501 gtcttggtga cgagagccac ccagccaatt ccgcgcgtgg cagaacatgg atatttggcg
     4561 gggacattcg tttctgatga caatttccgc caggttcaga caatacgttt tctctcttat
     4621 atcaatttta ttgcaggaac gaaaaatgaa tattttcact ttatccaaag caccgctata
     4681 cttgttaatt tcactatttt tacccacgat ggccatggct atcgatccac ctgaacgcga
     4741 actttcgcga tttgccctga aaacgaatta ccttcagtcc cctgatgaag gcgtctatga
     4801 actggcgttt gataatgcca gtaaaaaggt gtttgcagca gtcaccgatc gtgtaaatcg
     4861 tgaagccaat aaaggctatc tgtattcgtt taattcagat tcgctgaaag tcgaaaataa
     4921 atacacgatg ccataccggg cattttcgct ggcgataaat caggataaac atcagctcta
     4981 tatcggacac acccagtcag cgtccctgcg tatcagtatg tttgacaccc caaccggtaa
     5041 actggtaaga accagcgaca ggttaagttt taaagcggca aacgctgcag attcgcgttt
     5101 tgagcatttg cgccatatgg tttacagcca ggattccgat accctgtttg tgagttatag
     5161 caatatgctg aaaacggccg agggcatgaa gcctctgcat aagctgttaa tgctcgacgg
     5221 gacgacgctt gccttaaaag gcgaggttaa ggatgcttac aaaggtacag cgtatggtct
     5281 gacgatggat gaaaaaacac agaaaatcta cgttggcgga agagattaca tcaacgaaat
     5341 tgatgcgaaa aatcagacgc tgctgcgtac catcccgttg aaagatccga gaccacaaat
     5401 cacaagtgtg cagaatctgg cggtggactc cgcttctgac cgtgcctttg tggtggtatt
     5461 cgaccatgac gatcgttccg gtacaaaaga tggcctctat atttttgact tacgcgacgg
     5521 taaacagctt ggctatgtgc acacaggagc cggagctaac gcggtgaaat acaatccgaa
     5581 atataacgaa ctgtatgtca ccaacttcac tagcggcacc atcagcgtag tggatgccac
     5641 caaatacagc atcacccgtg aatttaacat gccggtctac ccaaaccaga tggtgttgtc
     5701 ggacgatatg gatacccttt acattggcat caaagaaggc tttaaccgcg attgggatcc
     5761 tgatgtgttt gtggaaggag ctaaagaacg tattctgagc attgatttga aaaagtcgtg
     5821 atcgggggaa aaaacatggg ataaaaactc cgttattcca ctaaactggc cggactagga
     5881 aaagcaaaca tctctgtcct gccggtacgc ctgttacgcc gctccatgag gctgaggaat
     5941 ctccagaaaa cgagacaggc acagcattgt acgatcaact gatttgtgcc aataattcaa
     6001 tgaaatcata gctatgcctg ttcacgtata ggaaattgaa aaactaagcg ataccactgt
     6061 ccgcgtctta tgcctcgtgc ggtaagctgt ttttcacatc acgccggtgt ttttttcttt
     6121 ctgtggacgg ttttaatact gtaatcggcc gttttttata cttaccccga ttcccgggcg
     6181 cacttatcct gcatcacccc gggatatacc tcagcagact gatatcccgc gcgtttttct
     6241 tcagcccctc cacattcagt cccgcgatgg cccggcggta taccatccgg ccgccacaca
     6301 gcacgcattc gaacgggtca cgactcagga actgtttcac catttgtgca tagcacactt
     6361 tcgccactgg ttccggttta tcctgttttt ataacggtaa ttgcagacca tgacaaaccg
     6421 cagccgtcag gctgcctact cgagtcacaa ggctctctgt gtccgatatg ccggcagcgc
     6481 attacccatg aaactggctg gaacgtacac cataaggtga agaaagttat ggggggcggt
     6541 gaagaattat ctaaccttgt cttgttacat ccaaattgcc atcgacagtt acacagttgt
     6601 gaagccggct ctctcaaaaa gggcttataa aggcttgagc ggtgtaccgg gaaaccggta
     6661 tgcaccgttc ttaggggagg gcagtccagc aatgaactgt ccttacccga caaacatcca
     6721 aaacgaacgg aacgtgctgg aatccgcata taacccgttg taaagtgagg aaatggacac
     6781 ctcacttgct catgagaacg cccgcctgcg ggcactgttg cagacgcaac aggacactat
     6841 ccaccagatg gctgaataca accgcctgct ctcacagcgg atggcggctt atgcttccga
     6901 aatcaaccga ctgaaggcgc tggttgcgaa actgcagcgt atgcagttcg gtaaaagctc
     6961 agaaaaactt cgcgcaaaaa ccgaacggca gattccattt tcacgggcga tctacgccac
     7021 acaggctctg ggttgcagtg actgctccat taaggcgatt ttgaactcat aagggaagta
     7081 acaaaaaaac tgcaaaagta caataattat atatggccaa actaacctct attaaaaaaa
     7141 catcagtttt tcacacttag ttgagcttca tgaaaaaatc atcgaggatt tcattgcaga
     7201 atacacattc tactaactgg aagcactcca taagaggaat cagagaaagt atcgtttttt
     7261 tatagtaaaa ttcattgctg ttcaataaaa ttgatatagt tattaaatta tgaaaataat
     7321 ttcacaaaaa agattaactt gagttcttaa gcatcggatt ttagatattt tgaaatatct
     7381 ggcatcacat aacatcaaaa gtatataata cccttatcta attacatgca gtatattgta
     7441 tatatactca aaaattgtaa ttcataccct actatatctt gtggggaaag atattaatta
     7501 aaactgtttt catataaggt tcattttatg aatatatcag aaacactgaa ctcagcaaat
     7561 acccaatgca atatagattc tatggataac agattacata cattatttcc aaaagtgaca
     7621 tcagtgcgaa acgctgcaca acaaactatg ccagatgaaa aaaatttaaa agatagtgca
     7681 aatattatta aagatttctt taggaaaact atagcagcac agagttatag tagaatgttc
     7741 tctcaaggct ctaactttaa atctttaaat atagcaattg atgcaccatc agacgctaaa
     7801 gcctcattta aggctattga gcaccttgac agattatcga agcattatat atctgaaata
     7861 agggaaaaac ttcatcctct ttctgcagag gaactcaatt tgctttcgct aattattaat
     7921 tctgatttaa tcttcagaca tcaaagtaat tctgatttgt ctgataaaat tttaaacatt
     7981 aagtcattca ataaaattca gtctgaagga atatgcacaa aacgaaacac atacgctgat
     8041 gatataaaaa aaatagctaa tcatgacttt gtgttttttg gcgttgaaat ctctagccat
     8101 cagaaaaaac accccctgaa tacaaaacat cacactgttg attttggtgc aaatgcgtat
     8161 atcattgatc atgactctcc atatggatat atgacattaa ccgatcactt tgataatgct
     8221 attccacctg ttttttacca tgagcaccaa tcatttttag ataaattttc agaggttaat
     8281 aaagaagtta gtcgatacgt acatggaagt aaaggaatta tagatgtacc aatattcaat
     8341 actaaagata tgaagttagg gctcggatta tacctgattg actttatcag aaaaagtgaa
     8401 gaccaaagct tcaaggagtt ttgctatgga aaaaatcttg cccctgtgga tctggataga
     8461 atcataaact ttgtttttca gccagagtac catataccta ggatggtaag tacagaaaac
     8521 ttcaaaaaag ttaagattag agaaatatcc ttagaggagg ctgttacagc atctaattac
     8581 gaagaaatta acaagcaggt cactaacaaa aaaattgctc tccagactct ttttctttcg
     8641 attactaatc aaaaagagga tgtcgcctta tatatattat ctaattttga gataactaga
     8701 caagatgtta tttccataaa gcatgagttg tatgatattg agtatctact tagcgctcat
     8761 aattcaagct gtaaagtact tgagtatttt atcaataagg gattggttga tgtaaacaca
     8821 aagttcaaaa aaactaatag tggggattgt atgttggata acgcaataaa atatgagaat
     8881 gcagaaatga taaaactatt attgaaatat ggtgcaacat ctgacaataa atatatttaa
     8941 tcaaaattga atatcgttta gcaaaaggca gtatttgcac aaaatatcga tatattgttt
     9001 attgtcagta tggctcaatg tgataatagt tggaaagttt gatgggtttc gccccgttgt
     9061 agcggtagtc gagctggaag gtcttcaggc actgcttaca gcgatagagc agcccccctg
     9121 aactggaatg gccgttccgg ataccccctg agtttcagag taacggggac aaaccacatc
     9181 aatctttgcc atcaatcatc caaagggcaa agagtacaac aacactaagt ctgcgtcaca
     9241 acccatcaat gaaaggaata tatacatatg ccatcagtaa atttaatccc atcaaggaaa
     9301 atatgtttgc aaaatatgat aaataaagac aacgtctctg ttgagacaat ccagtctcta
     9361 ttgcactcaa aacaattgcc atatttttct gacaagagga gttttttatt aaatctaaat
     9421 tgccaagtta ccgatcactc tggaagactt attgtctgtc gacatttagc ttcctactgg
     9481 atagcacagt ttaacaaaag tagtggtcac gtggattatc atcactttgc ttttccggat
     9541 gaaattaaaa attatgtttc agtgagtgaa gaagaaaagg ctattaatgt gcctgctatt
     9601 atttattttg ttgaaaacgg ttcatgggga gatattattt tttatatttt caatgaaatg
     9661 attttccatt ccgaaaaaag cagagcacta gaaataagta catcaaatca caatatggca
     9721 ttaggcttga agattaaaga aactaaaaat gggggggatt ttgtcattca gctttatgat
     9781 cccaaccata cagcaactca tttacgagca gagtttaaca aatttaactt agctaaaata
     9841 aaaaaactga ctgtagataa ttttcttgat gaaaaacatc agaaatgtta tggtcttata
     9901 tccgacggta tgtctatatt tgtggacaga catactccaa caagcatgtc ctccataatc
     9961 agatggccta ataatttact tcaccccaaa gttatttatc acgcgatgcg tatgggattg
    10021 actgagctaa tccaaaaagt aacaagagtc gtacaactat ctgacctttc agacaatacg
    10081 ttagaattac ttttggcagc caaaaatgac gatggtttgt caggattgct tttagcttta
    10141 caaaatgggc attcagatac aatcttagca tacggagaac tcctggaaac ttctggactt
    10201 aaccttgata aaacggtaga actactaact gcggaaggaa tgggaggacg aatatcgggt
    10261 ttatcccaag cacttcaaaa tgggcatgca gaaactatca aaacatacgg aaggcttctc
    10321 aagaagagag caataaatat cgaatacaat aagctgaaaa atttgctgac cgcttattat
    10381 tatgatgaag tacacagaca gatacccgga ctaatgtttg ctcttcaaaa tggacatgca
    10441 gatgctatac gcgcatacgg tgagctcatt cttagccccc ctctcctcaa ctcagaggat
    10501 attgtaaatt tgctggcctc aaggagatat gacaatgttc ccggacttct gttagcattg
    10561 aataatggac aggctgatgc aatcttagct tatggtgata tcttgaatga ggcaaaactt
    10621 aacttggata aaaaagcaga gctgttagaa gcgaaagatt ctaatggttt atctggattg
    10681 tttgtagcct tgcataatgg atgtgtagaa acaattattg cttatgggaa aatacttcac
    10741 actgcagacc ttactccaca tcaggcatca aaattactgg cagcagaagg cccaaatggg
    10801 gtatctggat taattatagc ttttcaaaat aggaattttg aggcaataaa aacttatatg
    10861 gaaataataa aaaatgaaaa tattacacct gaagaaatag cagaacactt ggacaaaaaa
    10921 aatggaagtg attttctaga aattatgaag aatataaaaa gctgaatatt atctcgtggt
    10981 gatacactga atttgaggta accggctcat ttaaaccgtc tggtctgttt cctccggctc
    11041 cacaaaaata atgtccatca ttttga
//
LOCUS       DAJVUN010000128        10951 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.128, whole genome shotgun sequence.
ACCESSION   DAJVUN010000128 DAJVUN010000000
VERSION     DAJVUN010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10951)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10951)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10951
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.128"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            190..2378
                     /gene="traD"
                     /locus_tag="OQQ76_002917"
                     /pseudo
     CDS             190..2378
                     /gene="traD"
                     /locus_tag="OQQ76_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001577029.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
     gene            complement(2387..2785)
                     /gene="vapC"
                     /locus_tag="OQQ76_002918"
     CDS             complement(2387..2785)
                     /gene="vapC"
                     /locus_tag="OQQ76_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(fMet)-specific endonuclease VapC"
                     /protein_id="HCS1969340.1"
                     /translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELI
                     YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTVQIRAELARQGRPVGPFDQMIA
                     GHARSRGLIIVTNNTREFERVGGLRTEDWS"
     gene            complement(2785..3012)
                     /gene="vapB"
                     /locus_tag="OQQ76_002919"
     CDS             complement(2785..3012)
                     /gene="vapB"
                     /locus_tag="OQQ76_002919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin VapB"
                     /protein_id="HCS1969341.1"
                     /translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
                     ETWDEWFDGHSVSADFMDNREQPGMQERESF"
     gene            3216..3401
                     /locus_tag="OQQ76_002920"
     CDS             3216..3401
                     /locus_tag="OQQ76_002920"
                     /inference="COORDINATES: protein motif:HMM:NF020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase domain-containing protein"
                     /protein_id="HCS1969342.1"
                     /translation="MQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSA
                     PKSVSMMAMLGGGQTSY"
     gene            3497..8276
                     /gene="traI"
                     /locus_tag="OQQ76_002921"
                     /pseudo
     CDS             3497..8276
                     /gene="traI"
                     /locus_tag="OQQ76_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005079803.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer relaxase/helicase TraI"
     gene            8296..9042
                     /gene="traX"
                     /locus_tag="OQQ76_002922"
     CDS             8296..9042
                     /gene="traX"
                     /locus_tag="OQQ76_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858383.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus acetylase TraX"
                     /protein_id="HCS1969343.1"
                     /translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
                     VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
                     AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
                     LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
                     AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
     gene            9097..9657
                     /locus_tag="OQQ76_002923"
     CDS             9097..9657
                     /locus_tag="OQQ76_002923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fertility inhibition protein FinO"
                     /protein_id="HCS1969344.1"
                     /translation="MTEQKRPVLTLKRKTEGTATVRSRKTIINVTTPPKWKVKKQKLA
                     EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRD
                     VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
                     YAGARLAKIRRQNRIKAELQAVLDEK"
     gene            9788..10000
                     /locus_tag="OQQ76_002924"
     CDS             9788..10000
                     /locus_tag="OQQ76_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HCS1969345.1"
                     /translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
                     VAPRTDWQQFARKRAEHCHRRCRGRG"
     gene            10244..10684
                     /locus_tag="OQQ76_002925"
     CDS             10244..10684
                     /locus_tag="OQQ76_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HCS1969346.1"
                     /translation="MRKYIPLVLFIFSWPVLSADIHGRVVRVLDGDTIEVMDSLKAVR
                     IRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQRDRYGRILGQVYAPDGMNIN
                     QFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDADPVPP"
     gene            10751..>10951
                     /gene="hha"
                     /locus_tag="OQQ76_002926"
     CDS             10751..>10951
                     /gene="hha"
                     /locus_tag="OQQ76_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HCS1969347.1"
                     /translation="MAKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSNRERESFNSAA
                     DHRLAELITGKLYDRIPKEIWKY"
BASE COUNT         2599 a         2715 c         3346 g         2291 t
ORIGIN      
        1 ccccggaaag aaataaaata aattttattt ctccccggcg tttccgaaat aaatatgaaa
       61 acactgagcg gttgtgcaaa ttctttgtgc gaccgtgaag tgttgccggc gaagccggaa
      121 tttaacggtt attaatcttt tcatcattaa taatcagtcc gactgacttt ctttcttcgg
      181 aatatcatca tgagttttaa cgcaaaggat atgacccagg gcggtcagat tgcgtccatg
      241 cgtatccgca tgttcagcca gatcgccaat attatgcttt actgcctgtt tattttttct
      301 ggatactcgt tggtctggtt ttatgggtaa aaataagctg gcagacgttt gtgaatggct
      361 gtatttactg gtggtgtacc acgctggaag gcatgcggga tttaatcaag tctcagccgg
      421 tatatgagat tcagtattac ggcaaaacct tccggatgaa cgctgctcag gtactgcatg
      481 ataaatatat gatctggtgc ggtgagcagt tatggtctgc attcgttctg accacagttg
      541 tggcactggt tatttgcctg attaccttct ttgttgtctc ctggattctg gggcgtcagg
      601 gtaaacaaca gagcgaaaat gaagtcacag gtggtcgtca actgacagac aatccgaaag
      661 acgttgcccg gatgctgaaa aaagacggca gggactccga tatccggatt ggcgatctgc
      721 cgattatccg ggattccgaa atccagaact tctgtctgca cggcacggtc ggggccggta
      781 agtcggaggt tatccgtcgt ctggccaact acgcccgtca gcgtggtgat atggtggtga
      841 tttatgaccg ttcaggggaa tttgttaaaa gttactatga tccctccatc gataagatcc
      901 tgaatccgct ggatgcacgc tgtgccgcct gggatttgtg gaaggagtgc ctgacacagc
      961 cggattttga taataccgca aatactctga tcccgatggg cacaaaagag gacccgttct
     1021 ggcagggttc aggacgtacc atttttgcgg aagcggcgta tctgatgcgt aatgacccca
     1081 accgcagcta cagcaaactg gtggacacac tgctttccat caaaattgaa aaactgcgta
     1141 cctacctgcg taattcaccg gcggccaacc tggtggaaga gaaaatcgag aaaacggcca
     1201 tatccatccg tgctgtgctg accaactatg tgaaagccat ccgttacctg caggggattg
     1261 agcataacgg tgagcccttc accatccgtg actggatgcg tggtgtccgg gaggatcaga
     1321 aaaacggctg gctgtttatc tcgtcgaatg ccgacactca tgcctccctg aagccggtga
     1381 tctccatgtg gctgtccatt gccattcgtg gtctgctggc aatgggagaa aaccgtaatc
     1441 gtcgtgtgtg gttcttctgt gatgagttac ccacattaca caaactgccg gacctggtgg
     1501 agatcctgcc ggaagcccgt aagttcggtg gctgttatgt gtttggtatc cagtcctatg
     1561 cccagctgga agatatctac ggtgagaaag cggctgccac gctgtttgac gtcatgaaca
     1621 cccgtgcctt tttccgttct cccagccata agattgcgga gttcgctgcc ggtgaaattg
     1681 gtgagaaaga gcacctgaaa gccagcgaac agtattccta cggtgctgat ccggtacgtg
     1741 acggggtatc gaccggtaag gatatggagc gccagacgct ggtcagttat tccgacattc
     1801 agtccctgcc ggatctgacc tgctatgtca ccctgcccgg accgtatccg gcagtcaaac
     1861 tctcactgaa atatcaggaa cgaccgaagg tcgctccgga gtttattccg cgtgacatca
     1921 acccggaaat ggagaaccgt ctgagtgccg tacttgccgc aagggaagca gaaggtcgtc
     1981 agatggccag cctcttcgaa ccggatgtcc cggaggttgt ttccggagaa gacgtgactc
     2041 aggctgaaca gccgcaacag ccgcaacagc cgcaacagcc gcaacagccg caacagccgg
     2101 tgtctcctgt catcaacgat aagaagtcag attcaggtgt gaatgttccg gcagggggga
     2161 tcgagcagga gctgaaaatg aaaccggaag aagagatgga acagcaactg ccacccggga
     2221 tcagtgaatc cggtgaagtg gtggatatgg ccgcttatga ggcatggcag caggaaaatc
     2281 atccggacac ctggcagcag atgcagcgtc gtgaagaggt gaacatcaat gtgcaccggg
     2341 aacccgggga ggatgttgag ccgggagatg atttctgatg aacaggtcag ctccagtctt
     2401 cagttctcag gccgcccaca cgttcaaatt cccgggtgtt attagtcaca ataatcagcc
     2461 cccgactgcg ggcatgacct gcgatcattt gatcaaatgg cccgacaggg cgtccctgac
     2521 gggcaagttc tgctcttatc tggacggtgt gtgtggctgc agcagcgtcg taatccagaa
     2581 catcaatgcg ggaaacaaat ccctcgatca cagcgagatt acgttcaggc atctggcttt
     2641 tttctgcacc atatatcagc tccatcaggg tgaccgaact gatacacatt ctcccctggt
     2701 tcaggttaaa acgctccctg acgctggcgg gtttgttctt tatcgtaaaa atgcagatgt
     2761 tggtatcgag cataaacttc agcatcagaa tgactccctt tcctgcatgc cgggctgttc
     2821 cctgttatcc ataaaatcgg cgctgacgct gtgtccgtcg aaccattcgt cccatgtctc
     2881 tccggctggc gtaatgattc tggttcgtcc gacagcaatc acttcaacgc gttttacgtt
     2941 ttccggcaat gcaaccgctt ttggcagtct gaccgcctgg ctgcggttgc tgagaaatac
     3001 ggtggtttcc attatttgcc tccttatgtg gatatgtctt gtgtatatcc attgtgggat
     3061 tgataccggg atatgtcaaa gggatatacg tttatgatga gtatcgcgca ggtcagatcg
     3121 gccggaagtg ccgggaatta ttataccgac aaggataatt actatgtgct gggcagcatg
     3181 ggagaacgct gggccggcca gggggctgaa caaggctgca gggcagtgtc gataaggatg
     3241 tctttacccg ccttctggag ggcaggctgc cggacggggc ggatttaagc cgcatgcagg
     3301 atggcagtaa caggcatcgt cccggctacg acctgacctt ctccgctccc aaaagtgtct
     3361 ccatgatggc catgctcggg gggggacaaa cgtcttattg aagcacataa ccaggccgtg
     3421 gattttgctg tccgtcatca cccgtgtgga ggcactggcc tccacacggg tgatgacgga
     3481 cggacagtca gaaacggtgc tgaccggtaa tctggtgatg gcactgttta accacgacac
     3541 cagtcgcgat caggaaccac agttacacac gcatgcggtg gtgactaatg ttacgcagca
     3601 taacggcgaa tggaagacac tgagcagtga caaagtgggg aaaacggggt tcattgagaa
     3661 tgtgtacgct aatcagattg cctttggcag gctctaccgg gaaaaactga aagagcaggt
     3721 tgaggcgctg ggctatgaaa ctgaagtggt cggtaagcac ggtatgtggg aaatgccggg
     3781 tgtaccggtg gaggcctttt ccggacgctc acagactatc cgggaggccg tcggggaaga
     3841 cgcctcgctg aaatcccggg atgtggcggc gctggatacg cgtaaatcca aacagcacgt
     3901 cgatcctgaa gtcagaatgg ccgagtggat gcagacgctg aaggaaaccg ggttcgacat
     3961 ccgggcatat cgtgacgcag cggaacaacg ggcatatacc cgcacgcaga cacccggacc
     4021 cgcttcacag gacgggccgg atgtgcagca ggcggtgaca caggccattg ccggattaag
     4081 tgaacgcaaa gtgcagttta tgtatacgga cctgctggcc aggacggtcg gcatactgcc
     4141 gccggaaaat ggtgtgattg aacgggcacg cgccggtatc gatgaggcca tcagccgtga
     4201 gcagcttatc cccctcgatc gtgagaaggg gctgttcacg tccgggattc atatgctcga
     4261 tgagctgtca gtccgggcac tcagtcgtga catcatgaaa cagaaccggg tgaccgtaca
     4321 tccggagaaa agtgtccccc ggacggccgg ttacagcgat gccgtcagtg ttctggcaca
     4381 ggaccgtccg tcgctggcca ttgtgtccgg gcagggcggt gcagccgggc atcgtgagcg
     4441 ggtggctgaa ctggtcatga tggcccggga gcaggggcgg gaggtgcaga ttatcgctgc
     4501 tgaccgtcgc tcgcagatga acctgaagca ggatgaacgg ctgtccggtg aactgataac
     4561 cggacgtcgt cagttgctgg aaggcatggc cttcacgccg ggcagtaccg ttatcgtcga
     4621 ccagggcgaa aaactctccc tgaaagagac gttaaccctg ctggatggtg ccgcacgtca
     4681 taacgtacag gtcctgataa ctgacagcgg gcagcgaacc ggtacaggca gtgcactgat
     4741 ggccatgaag gatgccgggg tgaacacata tcgctggcag gggggagaac agcgaccggc
     4801 caccatcatc agtgaaccgg accgttatgt ccgctatgcc cggctggccg gagattttgc
     4861 ggccagcgtg aaagccggag aagagagcgt ggcacaggtc agcggagtac gggaacaggc
     4921 catactgaca caggccattc gcagtgagct gaaaacacag ggcgtgctcg gacacccgga
     4981 ggtaaccatg accgccctgt caccggtctg gctggacagc cggagccgtt atctgcggga
     5041 tatgtaccgc ccgggaatgg tgatggagca gtggaacccg gagacacgca gtcatgaccg
     5101 ctatgtgaca gaacgtgtga cggcgcagag tcacggcctg accctgcgga atgcgcaggg
     5161 cgaaacgcag gtggtgcgta tttcttccct ggacagcagc tggtcgctgt tccggccgga
     5221 aaaaatgccg gtggcagacg gtgagcgtct gagggtgaca gggaaaattc ccggactccg
     5281 cgtctccggc ggtgaccgcc tgcaggtggc atccgtcagt gaagatgcga tgacggttgt
     5341 tgtgccggga cgggctgaac cggccaccct gcctgtgagc gattcaccgt tcacggcact
     5401 gaagctggag aacggctggg tggaaacgcc cgggcattcc gtcagcgaca gtgcgacggt
     5461 ttttgcctcc gtcacacaga tggcaatgga caatgccacc ctgaacggtc tggcccgcag
     5521 tggtcgtgat gtccggctgt attcctcact ggatgaaacc cgtactgcgg aaaaacttgc
     5581 ccgccatccc tcctttacgg tggtttctga gcagataaag gcgcgtgccg gtgagacatt
     5641 gctggaaacc gctatcagtc tgcagaaagc cgggcttcac acgccggcac agcaggccat
     5701 tcatctggcc cttcctgtgc tggaaagtaa aaacctggcc ttcagcatgg tggacctgct
     5761 gacagaggcg aagtcgtttg ctgcagaagg aaccggtttt gctgacctgg gaggggaaat
     5821 caatgcgcag ataaaacggg gtgatttact gtatgtggat gtggcaaaag gctatggcac
     5881 aggcctgctg gtttcccgtg cgtcgtatga ggcagaaaag agcattcttc gccatattct
     5941 cgaaggtaag gaagcggtca cgccgctgat ggagatagta cctggcgaac tcatggagaa
     6001 actgacatca ggacagcgcg ccgccacccg tatgatactg gaaacgtccg accgtttcac
     6061 ggtggtgcag ggctatgccg gtgtgggtaa gaccacacag ttccgggcgg tgatgtcagc
     6121 cgtgaacatg ctgccggaga gtgaacgtcc ccgtgtcgtg gggctggggc ccacacaccg
     6181 tgcggtcggg gagatgcgca gcgccggcgt ggatgcacag acactggcgt cctttctgca
     6241 tgacacgcag ctgcagcagc gcagcggaga aacgccggat ttcagcaaca cgctgttcct
     6301 tctcgatgag agctctatgg tgggcaatac cgacatggca cgggcatacg ccctgattgc
     6361 ggccggtggc ggtcgggctg tggccagcgg tgacacggac cagctgcagg ccatcgcgcc
     6421 cggtcagcct ttccgtctcc agcagacgcg cagtgctgcc gatgtggtca tcatgaagga
     6481 gattgtgcgt cagacgccgg aactgcggga ggcggtatac agcctgatta accgggatgt
     6541 ggaaagggcg ctgtccgggc ttgagcgtgt gaaaccgtct caggtgccac gtctggaggg
     6601 cgcatgggca ccggagcact ccgtgacgga gttcagtcac agccaggaag cgaaactggc
     6661 agaagcgcag cagaaggcga tgctgaaagg cgaggctttt ccggatgtcc ccatgacact
     6721 gtatgaagcc attgtccgcg actataccgg caggacaccg gaagcacggg agcagacgct
     6781 gattgtcacg cacctgaatg aggaccggcg cgtactgaac agcatgattc atgatgcacg
     6841 ggaaaaggcc ggagaactgg ggcaggtgca ggtcatggtg ccagtcctga acacagcgaa
     6901 tatacgcgac ggggagctgc gtcgtctctc cacctgggag aataacccgg atgcccttgc
     6961 cctggtggat aatgtgtatc accggattgc cggtatcagc aaggatgacg ggctgataac
     7021 cctgcaggat gcggaaggta acacgcggct gatttcgccc cgggaggcgg tggctgaagg
     7081 cgtcacgctg tacaccccgg acaccatccg gtgacagtgt cacactttct gacggtcagc
     7141 agacccgtgt gattcgccct ggtcaggagc gggcagagca acatattgac ctggcctatg
     7201 ccatcaccgc ccacggtgca cagggggcga gtgaaacctt tgccatcgcg cttgaaggca
     7261 cggaaggtaa ccggaaactg atggccggct ttgagtcagc ctacgtggcc ctgtcgcgta
     7321 tgaagcagca tgtgcaggtg tacaccgata accgtcaggg ctggacggat gccatcaaca
     7381 atgccgtaca gaaaggaact gcccacgatg tgtttgagcc gaaaccggac cgggaggtca
     7441 tgaatgcaga gcggctgttc agtacggcgc gggagctgcg ggacgtggcg gcaggccgtg
     7501 ccgttctccg tcaggcgggg ctggccgggg gagacagtcc tgcacggttt attgatccgg
     7561 gacgtaaata tccgcaaccg tatgtggcac tgccggcgtt tgaccgtaac ggcaagtccg
     7621 ccggtatctg gctgaacccg ctgaccacgg atgacggaaa cgggctgcgg ggattcagcg
     7681 gtgaaggtcg ggtaaaaggc agcggggatg cgcagttcgt ggccctgcag ggcagccgta
     7741 acggagaaag cctgctggct gataatatgc aggatggcgt ccggattgcc cgtgataatc
     7801 ctgacagtgg tgtggtggta agaatctccg gtgaaggccg tccgtggaat cccggtgcca
     7861 tcaccggtgg ccgcgtgtgg ggggatatcc cggacaacag cgtccagccg ggagccggaa
     7921 atggcgaacc ggtcacggca gaggtactgg cacagcggca ggctgaagag gccatccgcc
     7981 gtgaaacgga acgtcgcgca gatgaaattg tccgtaaaat ggcagagaac aaacctgacc
     8041 tgccggacgg caaaacagag caggctgtca gggaaattgc cgggcaggag cgtgaccggg
     8101 ctgccataac tgaacgggaa gccgcgctgc cggagagtgt actgcgtgaa ccacaacggg
     8161 tgcgggaagc ggtctgggaa gttgcccggg aaaatttgct gcaggagcgt ctgcagcaga
     8221 tggagcggga tatggttcgt gacctgcaga aagagaaaac cccgggcgga gactgataca
     8281 ggaagacaaa cactgatgac aacggataac acgaacacga cacgtaacga ttcactggct
     8341 gcacggaccg atacctggtt gcagtcattt ctggtctggt cacccggaca gcgggatatc
     8401 atcaaaacgg tggcactggt gctgatggta ctggaccaca tcaatctgat attccagctg
     8461 aagcaggaat ggatgtttct ggccgggcga ggagcctttc cgctttttgc cctggtgtgg
     8521 gggctgaatc tgtcccgtca tgcgcatatc cggcaaccgg ccattaaccg gctgtgggga
     8581 tggggaatta ttgcccagtt cgcatattat ctggcaggct ttccctggta tgaggggaat
     8641 atcctgtttg cctttgcagt ggcggcacag gtgctgacgt ggtgtgaaac gcgcagtggg
     8701 tggcgtacag cagcggccat actcctgatg gccctgtggg ggcctttgtc cggcaccagt
     8761 tacggtattg ccgggttgct gatgctggca gtcagcaacc ggctgtaccg ggcggaagac
     8821 agagcggaac gtctggcgct ggtcgcctgc ctgctggctg ttattccggc gcttaacctt
     8881 gccaccagtg atgcagcggc ggtggccggt cttgtgatga cggtgctgac cgttggtctg
     8941 gtgttgtgtg ccggaaaatc attaccccgt ttctggcccg gagacttttt cccgacgttc
     9001 tatgcctgtc atctggctgt gctgggcgtt ctggcgctgt gacgggtgtg gtatctttgg
     9061 ccgcaagagg atgattcgtc agaggcagaa cacagcatga cagagcagaa gcgaccggta
     9121 ctgacactga agcggaagac agagggaaca gcgactgtcc gcagccggaa aaccatcatc
     9181 aatgtcacca cgccaccaaa gtggaaggtg aaaaagcaga agctggccga gaaagcggcc
     9241 cgtgaagcag agctggcggc aaaaaaagcg caggccagac aggcgctgtc catttatctg
     9301 aacctgccca cgctggatga ggctgtgaat accctgaagc cctggtggcc gggattattt
     9361 gacggtgaca cgccccggct tctggcctgc ggtatccggg acgtgttact ggaagacgtg
     9421 gcgcagcgga atatcccgct ctcgcataaa aaactgcgca gggcgctgaa ggccatcacc
     9481 cgttcagaaa gctatctgtg tgccatgaaa gccggtgcct gccggtatga cacggaaggg
     9541 tatgtgacgg agcatatttc tcaggaggag gaagcgtatg cgggagcgcg tctggcgaaa
     9601 attcgtcgcc agaaccggat aaaggcagaa cttcaggccg tgcttgatga gaaataaaaa
     9661 aagcctcccc cagagagagg aggcagggaa ataaggctta aaaggaaata acttccgctt
     9721 ccgaaaggaa gccagtccac tgaattattt atcacaataa tactgacaac taaaggggga
     9781 caagaaaatg aatggattca gaaacagttc acggaacggc caggtctggc gttaccagcg
     9841 tgccggcggg cgggccgtta ttctggaagt cagtggacgc tggatggaag cggcagaagc
     9901 atggcgacgg gctgcctgtg ttgcgcctag gacagactgg cagcagtttg cccggaaaag
     9961 ggctgaacac tgccaccggc gctgccgggg aagggggtaa cgaaaaaagc agccttcatt
    10021 actctaggag tcagaaggct gaaaggagtt tatgagattt gcttcttaat atccggtcgg
    10081 gcagtatgac cggacagttc tgagtagcac agagtctttt ccgcattaag tcgatttttt
    10141 atattttgcg attaatttca caaaataagg tgttattcaa tgtgtgctgc actattcagg
    10201 ggggctgaaa tacaggtgcc atttatctga tatggagaat aacatgagga aatatattcc
    10261 actggtatta tttatctttt catggccggt attgtctgca gatattcatg gacgggttgt
    10321 tcgtgtactg gacggtgata ccatcgaggt catggactca ctgaaggcgg tgcggatcag
    10381 gctggtaaat attgatgcac cggaaaagaa acaggattat ggccggtggt caacagacat
    10441 gatgaaatca ctggtcgcag gaaaaacggt taccgtcaca tattttcagc gagatcgtta
    10501 tggtcgtatt ctcgggcagg tttatgcacc agacggaatg aatattaatc agtttatggt
    10561 ccgggccggg gctgcctggg tatatgagca gtacaacaca gatcccgtgc tacctgtcct
    10621 tcagaacgaa gccagacaac aaaaacgtgg gctctggtca gatgctgatc cggttccccc
    10681 ctagatatgg aggcaccgta aataaagcga tggcaatcct atcattcatc tgttctcagc
    10741 gggaataaaa atggcaaaaa caaaacagga atggctgtat cagttacggc gatgttcatc
    10801 agtcaatacg ctggaaaaaa ttattcataa aaacagagac agtttatcaa acagagaacg
    10861 tgaatcattt aattcagcag cagaccaccg gctagcggaa ttaatcaccg gaaagttata
    10921 tgacaggata ccaaaagaga tatggaaata t
//
LOCUS       DAJVUN010000129        10837 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.129, whole genome shotgun sequence.
ACCESSION   DAJVUN010000129 DAJVUN010000000
VERSION     DAJVUN010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10837
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.129"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(167..2026)
                     /gene="gss"
                     /locus_tag="OQQ76_002927"
     CDS             complement(167..2026)
                     /gene="gss"
                     /locus_tag="OQQ76_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutathionylspermidine
                     amidase/synthase"
                     /protein_id="HCS1969348.1"
                     /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF
                     RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ
                     AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ
                     WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN
                     KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH
                     ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD
                     SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE
                     NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ
                     IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF
                     PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI
                     YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK"
     gene            2231..3097
                     /gene="yghU"
                     /locus_tag="OQQ76_002928"
     CDS             2231..3097
                     /gene="yghU"
                     /locus_tag="OQQ76_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HCS1969349.1"
                     /translation="MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
                     LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIP
                     ALRDHTHNPPIRVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGG
                     FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGN
                     VVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDAS
                     DFETNTEDKRQG"
     gene            complement(3220..3468)
                     /gene="hybG"
                     /locus_tag="OQQ76_002929"
     CDS             complement(3220..3468)
                     /gene="hybG"
                     /locus_tag="OQQ76_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation factor HybG"
                     /protein_id="HCS1969350.1"
                     /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL
                     LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA"
     gene            complement(3481..3822)
                     /gene="hypA"
                     /locus_tag="OQQ76_002930"
     CDS             complement(3481..3822)
                     /gene="hypA"
                     /locus_tag="OQQ76_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HCS1969351.1"
                     /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV
                     RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG
                     DSLIVKSIEVE"
     gene            complement(3815..4303)
                     /gene="hybE"
                     /locus_tag="OQQ76_002931"
     CDS             complement(3815..4303)
                     /gene="hybE"
                     /locus_tag="OQQ76_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-2 assembly chaperone"
                     /protein_id="HCS1969352.1"
                     /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD
                     FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV
                     SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE
                     NA"
     gene            complement(4296..4790)
                     /locus_tag="OQQ76_002932"
     CDS             complement(4296..4790)
                     /locus_tag="OQQ76_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HCS1969353.1"
                     /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA
                     GMELLGDMANRDHLIIADAIVSKKNTPGTMMILRDEEVQALFTNKISPHQLGLADVLS
                     ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE
                     AIHD"
     gene            complement(4790..6493)
                     /gene="hybC"
                     /locus_tag="OQQ76_002933"
     CDS             complement(4790..6493)
                     /gene="hybC"
                     /locus_tag="OQQ76_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 large subunit"
                     /protein_id="HCS1969354.1"
                     /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI
                     VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH
                     DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA
                     SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL
                     AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG
                     KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS
                     WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE
                     STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI
                     GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP
                     RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV
                     L"
     gene            complement(6490..7668)
                     /gene="hybB"
                     /locus_tag="OQQ76_002934"
     CDS             complement(6490..7668)
                     /gene="hybB"
                     /locus_tag="OQQ76_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase cytochrome b subunit"
                     /protein_id="HCS1969355.1"
                     /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD
                     LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG
                     GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
                     VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF
                     IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLS
                     LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL
                     VAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
                     "
     gene            complement(7658..8644)
                     /gene="hybA"
                     /locus_tag="OQQ76_002935"
     CDS             complement(7658..8644)
                     /gene="hybA"
                     /locus_tag="OQQ76_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 operon protein HybA"
                     /protein_id="HCS1969356.1"
                     /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENHPPIPGSLGMLYDS
                     TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE
                     NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP
                     KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL
                     ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK
                     LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES"
     gene            complement(8647..9765)
                     /gene="hybO"
                     /locus_tag="OQQ76_002936"
     CDS             complement(8647..9765)
                     /gene="hybO"
                     /locus_tag="OQQ76_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 small subunit"
                     /protein_id="HCS1969357.1"
                     /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT
                     NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK
                     HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW
                     GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN
                     RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ
                     FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA
                     GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE"
     gene            complement(9954..10241)
                     /locus_tag="OQQ76_002937"
     CDS             complement(9954..10241)
                     /locus_tag="OQQ76_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2623 domain-containing protein"
                     /protein_id="HCS1969358.1"
                     /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY
                     EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN"
     gene            complement(10360..>10837)
                     /locus_tag="OQQ76_002938"
     CDS             complement(10360..>10837)
                     /locus_tag="OQQ76_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HCS1969359.1"
                     /translation="GGYPGNDDKGRELQQQVDPTKLMNDFFAAIEFMQRYPQATGKVG
                     ITGFCYGGGVSNAAAVAYPELACAVPFYGRQAPTADVAKIEAPLLLHFAELDTRINEG
                     WPAYEAALKANNKVYEAYIYPGVNHGFHNDSTPRYDKSAADLAWQRTLKWFDKYLS"
BASE COUNT         2630 a         2984 c         2688 g         2535 t
ORIGIN      
        1 agcattcatt caaaaccttt agaaataatc aaaacacagg tattccactg gttaatatat
       61 tcacatatga aatgaataaa tattagaaca tataaatatt gaatattttg attaatcccc
      121 gtactgatta ttcttcataa tcagtacggg gttgctacaa catgtattac tttttcacca
      181 caattaacgg ttcaatatca ctctcttttt tgatgaccag tgattcatca ccgcgcaaac
      241 acgtcccacc gtagttgccg cccacggtga aggtacatac ctgaatgtat ttaccgtcca
      301 ctttcggcaa acaccacagt tgctgataga tgtttttctg ctcggcaaat ttaccgctgg
      361 ttttgtccag cacctcttca tgatggctga ccaggtcgat attgctacca cagcgaccgg
      421 caatcggttt cactgcgtaa cctgttttca ccaattcatc attaacagtg aaatcggtat
      481 ccagcaggta acgatggtgc gggaacagcg accagaggat cggcagaatc gctttgttgc
      541 cggggatcac cgtccacagc ggctcaaaga ctagcacttc cgggcgcagc aatacgtcga
      601 taagacgcac ttcgttttgc ggatgaccgg tacggattgg caccgcagca aactcacggt
      661 cgctaacttc acgaatctga tcaaacgcgg tttcccacgc ccaggttttc cacacgcagt
      721 taaccagtcg cccttcccca tcaatcagtt gcccggcagc atcccagccc agttcatcca
      781 atccacgcaa gatacgcgtt tcaaagcccg cctggtgcag cgcctgctcc ataaactgcg
      841 cgtgatagtt ttcctcgata tctttgtcct gcatgatatg gacaaacgga cgtgcacgac
      901 tgtgtttcca ggcaccagcc aattcgttaa tcagcccttc cgccggattg aagccgttgc
      961 ctttatagcc ctgctccgcc caacgttcga ggatcaagcc cgcttcggta tgacaggagg
     1021 cggagtcggc gttgtactcg taaaccttca ggccacgctc atccatgcag aaatccatac
     1081 gaccagtgat catatggtga cggcgacgct gccaggagag acgcaaacgt ggccagagga
     1141 ttttcgggat gtcgaacagc gccagcaggt tgtcatcttt cagtaccttg tcggttgcgt
     1201 gaagatacat caggtgcagc tcgttggtgg ctttaattag ctcctgctcg gcactctcgg
     1261 taatggtgta gtaatgataa ggatcctgat tgatcacctg accgttggcc tgcacatagg
     1321 cgttttgcag cggatctttt tcatccagcc atttaccgtc aaactggcct ttgttttcca
     1381 ggcgcgctcc gctgattttc agcagctcgc ctgcaatttc cggctgcggt aagctgtatt
     1441 cagtatcttc cgtctggatc atccagccca gaatggtggt gtcatcaaaa gtgtctttca
     1501 gggtatagca gccgttttcg accaccatct ccagctcacg cgtccactgt tgcccttgcg
     1561 gcaacgggga atgaatcacg ttctgttccg caatacggac tttgttgcca tgcaattggg
     1621 taatgatggc gacatggcca gtgtctttaa attcaccgcc tttatcccag ataagaagcg
     1681 cacccgcgac cggcgcacgc ggcgagccgt taggaaatgc ctgcaatggc aggatgttgt
     1741 cattaaccac ttctcgcagg aagcgcagcg agaaaatctc ccacgccata cccacgtcag
     1801 taaagaccac accgtaattc agaaagagaa aacggcgagc aaattcaacg cattgccact
     1861 tgtggcccat atattcgtcg tcgatatagc tacggaatac ggcgtcatct tcgtattcct
     1921 gcggatcgag agaactgtaa tctgaagagt agattgctac cccacctggg gcgtagccca
     1981 ataatgtccc gaacggggca tcctggctgg tcgttccttt gctcatcact ttacctttaa
     2041 caatacaacc taagcagttg gcgtaattgt tgtgctctga ttacctgctc agcgacatta
     2101 accggacaga ggtcagacta atcatacacc tcatcgcagc ggctggcgca aagggttaaa
     2161 aaattcacat tctgtacagc aagtgacctg ccacactgct tcaacactac cactcagaag
     2221 gcaactcact atgacagaca atacttatca gcccgcgaaa gtctggacgt gggataaatc
     2281 cgctggcggc gcgttcgcca atatcaatcg cccggtttct ggtccgacgc atgaaaaaac
     2341 gctgcccgtt ggcaaacacc cattgcaact ttattcgctg ggaacgccga acggtcagaa
     2401 agtaacgatt atgcttgagg agctgctggc gctgggcgtt actggtgcag agtacgacgc
     2461 ctggctgatt cgtattggcg atggcgatca attctccagc ggctttgtcg aagtgaaccc
     2521 aaactcgaag atcccggcgc tgcgcgatca tacgcataat ccgccgatcc gtgtgtttga
     2581 atctggttcg atcctgcttt atctggcgga gaaatttggc tacttcctgc cgcaggattt
     2641 ggcaaagcgt actgaaacga tgaactggct gttctggtta cagggcgcgg caccgttcct
     2701 cggcggtggt tttggtcact tttaccatta cgcaccggta aagattgagt acgccatcaa
     2761 ccgctttacc atggaagcca aacgtctgct cgacgtgctg gataagcaac tggcgcagca
     2821 taagtttgtt gcgggcgatg agtacaccat tgcggatatg gcgatttggc cgtggtttgg
     2881 caacgtggtg ttaggtggtg tgtatgatgc cgctgagttt cttgatgcgg gcagttataa
     2941 gcatgtacaa cgctgggcga aagaagtagg cgaacgtccg gcggtgaaac gtgggcgtat
     3001 tgttaaccgc accaacggac cgctgaatga gcagttgcat gagcgccatg acgccagtga
     3061 tttcgagacg aatacggaag ataagcgtca ggggtaaggg ttggtgttcg tcgcagcaag
     3121 ccatccaggc cggataaggc gttcacgccg catccggcaa tcgtgcacaa tgcctgatgc
     3181 gacgctgccg cgtcttatca ggcctacgaa agctaatcat cacgcgctgg taatgtcgta
     3241 atccatttgg cgcagtgcgt ctaatgtggc tttggcttca tcttcgtcga tgatgctcat
     3301 ggcaaatccg acgtgtacca gcacccactg gcccagtaga tcggctgggt taccttcaca
     3361 aatcagggcg atattcacgt cgcgcttgat accacatact tcaacctgcg caagctggtg
     3421 aatatcttca ccgacagcca gcacctggcc tggaacgcca atacacatta ttaactccgg
     3481 ttattcaact tcaatacttt tgacgatcag cgaatcgccg gtatcgacac gcaaccgctc
     3541 gccgtgacag agcggacact gcgcatcgtg ctgatgaatc tccaccacct ggctgcaatc
     3601 ccagcaccag gcctgggcgg gtttatagac gatatgtaaa tcgcaccctt gcgccaccgt
     3661 tccgtggcag acaatttcaa aactaaaacg gacggcgctc tcctcaacgc aggagagcgc
     3721 gccaatttcc agccacacgg cggtgacgcg cttaacatcg tgctgctccg cctgccgttg
     3781 gataatttca acggcgctct ggcaaagcga caactcatgc attttcgcca ctcctgcgac
     3841 caaacagcag ggcgcgacgc cctgcgtgtg gtacatccgg attcgtgact ggcagcgaaa
     3901 ggatcattcg tgcgcagtca tccgtcaggc gttggccctc ttcaatcgac atactgtgcg
     3961 aaagcggtga catcagcgaa caggagaggt attgcgaaac accgtccagt tcgccaacgg
     4021 taaaggtcat ggtgccatac ggcagttgca gaccaatttt ttcactcact ttgcgcagcg
     4081 gccagagttg atccgggccg gggaagataa ctgcactcag catccacggg gtgatcacac
     4141 accccgtcca ctgaccttcg aacagcgtaa aatcagaaac atacaccggc attgaaggat
     4201 gcagaaaaga gagatcgtgc atcgaacgcc gggcaatttc ttcaaacgct gcctgtactt
     4261 gcgccttcgg ggaggtctgg aaacctgcta tctcttcagt catgaatcgc ctcccgtggg
     4321 atggcttcca cgcctgattc gcgcagcgca gccagaacct gctcaagcgc aggttcaatc
     4381 attgcttcaa ccgtcggcgt taagccgatg tgtggctcca gcgattccgg gatcacgccg
     4441 accagggtca gctttttcgg aaactcaccg gtgaagcgca gggccgacaa tacgtcggcc
     4501 aggccaagct gatgcggaga gattttgttg gtaaacaacg cctgaacttc ttcatcccgc
     4561 aggatcatca tcgttcccgg cgtgttcttt ttcgacacaa tggcatccgc aataatcaga
     4621 tgatcgcgat ttgccatgtc gccaagcagc tccattcccg ccgtgccgcc atcgaggatc
     4681 tcaacataat ccggcagaat gtatcgttgc tctaacgctt cgacaatccg cacaccgatg
     4741 gcttcatcgg tcagcaaaat attgccgacc cctaagacta aaatacgcat tacagaacct
     4801 tcactgaaac cacttcgttg ccgtcggcat ccactacgtg taccgcacag gccatgcacg
     4861 ggtcgaagga gtgaatggta cgcaccactt ccagcggttt attcggatca gcaaccggtg
     4921 tacccaccag cgactgctcg taaggaccga cgtcatcatt gaagttacgc ggaccagagt
     4981 tccaggttga tggaacaact gcctggtagt tactgataat accgtcttta ataaccatcc
     5041 agtgagagag cataccgcgc ggcgcttcga ggaagccaac acctttgaac tcacccgttg
     5101 ccggaatgtt cggtttcaca aaggtggtgt gatcgccttt gccgatattg gtgatcagtg
     5161 cactgtattg attttgcagg atatcctgca attcgcagca gtgaacggta cgaccaataa
     5221 tacggcccag cgtggagtgc agctgcgcca cttccagcgt gttgccagtc agtttctgat
     5281 aaatcgcaac gatttcattc agtttgttct gggtagattc gcgacctgcc gccagtttca
     5341 ccagcatatt agccagcgga cccacttcta ccgttttgcc gtagaaagtc ggtgatttca
     5401 cccaggaata tttcccgtcg tcagaccaac catcataagc cggaatggtg gtaccttccc
     5461 acggtgcctg cggcgcttcg tctttatacc aggagtgctt cgcgctttcc tgaatgcctt
     5521 tgatcaggta ttcatcggaa tgagaagtga tcggacgata cgaggacaga tccgcattct
     5581 caatgtagcc gcccgggaac aggaagctgc cgtttttact gtcggtcggg aattccggca
     5641 cgctcaggta gttcaccgca cctttaccgc gcgtcagcca ttccgggtag aacgcggcaa
     5701 taactgcggt atcaacctta taaacctgtt caacaaagtc gctcagcttg tcgatgaaag
     5761 acttgatgta catcaggcgc tcaaggttca gcacgcccaa accgtcgagg ttgatcgggt
     5821 tcgcgacacc acctaccgcc aggttctgaa tgtgcggcgt tttaccgccc agcagcgcca
     5881 cgacgcggtt agcgtcacgc tggcactcca gcgcctgcag gtagtgcgct accgcaatca
     5941 ggttcacttc cggcggcagt ttcatcgccg ggtgacccca gtagccattg gcgaaaatac
     6001 ccaactgacc gctggcaacc agatctttga tcttgttctg aactttagtg aactcttccg
     6061 gactgttcag atgccaggtc gaaacgcctt tcagcatttc ggaggctttg gttgggtcag
     6121 cttgcagtgc agaagtgatg tccacccagt ccagcgccga aagctgatag aaatgaacga
     6181 tatggtcatg cgtggtgtgc gcagccagaa tgatgttacg gatgtattgc gcgttaaccg
     6241 gaacgtcgat attcagcgca ctttctgccg cacgaacgga agacagcgcg tgagtggtag
     6301 tacatacgcc acagatacgt tgcacaatca tccatgcatc gcgcggatcg cggtttttca
     6361 cgatctcttc catgccgcgc cacatggtac cggaagccca tgctttcgaa acgacgccat
     6421 tttcgatttc gcaatcgatg cgtaaatgcc cctcaatacg ggttaccgga tcaatagtaa
     6481 ttctctggct catgctttgc tcgcctcatg acgattatga tcgttttgtt ttaaaggagg
     6541 aagtatcggc agtagacgaa tgagtacgat gtaagcgcaa atctcaatag ccacaaaacc
     6601 aatagaaatc aacagttctt cccaggtcgg gaagtaggcg taaccgccgc ccgggttgaa
     6661 tgccaccagc gaataggtca gacgccaggt tgcacaacct aacagtgcgc tcagtgctga
     6721 caggaacagc atgcgggaat cattacgcag cttcgccaca cgcagaacga ccagcgggaa
     6781 gagcatcagc aggacttcaa tccagaacat cacggagtag aagtcaccgg caaacgctaa
     6841 cgacagcttg tcgcgataga taagctcgcc aaagcgcagc acgatgaaaa tcgccagcaa
     6901 cacactgatg gtgttggtca gcttgacgaa cagactcttt tcatccggac cgttgccacg
     6961 cagacccgcc tgcaccagcg aaccttcaaa gatgacaatc gagaagccca tgatgaacgc
     7021 cgtcagcagc gagaacagcg gcaacatttc atagctctgc cacaacggat gcaccttgta
     7081 gcccgccgag atcatcagtg accccattga agactggtgc atggtcggca acagcgcgcc
     7141 aagtgcaatg atgaagaaca tcaccttgtt cagacgcttg agagaaacct tccagcccag
     7201 acgttcaaac agtgccggag caaactccag tgccatcacg ccgatataga tggtcataca
     7261 gaccgccgtc tcgaacagta ccgagttcac gttgaagtga cccggaatgt agaagtacgg
     7321 caggttccag tagcgaccca cgtcgatagt gatcgacaag ccacccagtg agtaaccaaa
     7381 cagactcgcc aacagcgccg gacgcaccag cggatggtat tgcccacggt taaagacgta
     7441 taccgcccac gccagcgccc agccgccaca ggcaaagccg gtaccaatca gcaggtcaaa
     7501 cgcgatccac acgccccacg ggaagccgcc gttcaggtca gagacagagc ccagaccgaa
     7561 caccagacgc ttcacaatca ggagcataca gatgacgatt aacggtccaa aaatcatgac
     7621 cggtttactg atgattttgc cgcccagcgg ttgtggatca tgactcatga tcgtctcctc
     7681 cgtcgtgatg gtcgtttttg gtgttgcgac gaaccagcac ggttaagccc gccagcacag
     7741 ccagtggtag catcatgcct ttatacaggg tgtgttgaat attttcggaa cgcgcaccgg
     7801 tagaaagatc gtccagtttc ggcaggtcga gattttcata aggcacaccc gtcagtacca
     7861 gaacctgagt accgccgccc tctttctcgc cgtacagatg cggataatat ttcggcaccg
     7921 tatgcaggta agtgtcgcca gatttcagcg tctgacgcgg atagtggtat tcgctgccag
     7981 gcttcagcgc cagacgtttt ttcgcctccg ccatcagctc ttcacgcgta ccgaaaatca
     8041 ccgcgcccgc cgggcacact tctacgcagc caggcagacc gcctttatcg agacgttcca
     8101 cacctttctg gttgcacagc tcgcacttat gcagcgcacc aaacgggttg ttgtagtcgt
     8161 acttcggcac gttgtacgga caggcgacca tgcagtaacg gcaaccggtg cacacgtctt
     8221 tgtcgtaatg gacaatgccg gttttcggat cttttttcag tgcagagacc gggcacacag
     8281 agacacagtt cggatcgacg cagtgcatac actgtttctt aatgtacgcg tagccgttct
     8341 cctcctggtc tttgttgacc cctgtgccgc tggtccacac ctgaatgatg ttattggtat
     8401 acggcgacag tttgtcgttg ttcgaccagg tctgttcccc ttgcgggtta cgttcaggga
     8461 agttgatatc ctgacacttg gtgacgcaag cctggcagcc tacgcacaag gtcgagtcgt
     8521 acaacatccc cagcgatccc ggaattggcg ggtggttttc agcagccgca tgactgacag
     8581 acggcagcgc gcccgtcagc aatgccccgc aggaggctgc tttaataaaa ttacgtctgt
     8641 tcacggttat tctccccgtg agtcagcgtt atctttcttt tgctgacgac ccagttcacg
     8701 caccgccatc acgctgacac cggcaaccag cccaaccaca ccgccgagca aaccaatagc
     8761 gcctgcagag acgttgccgc cctctttagc gttaacatcc ggtttctgtg aacgcggagt
     8821 ctgattttcg acgttggcaa gctgatggat gcctttatgg aagccgatac cttcttcgtt
     8881 acagccatag catgggtgac caatcgctac cggccacacg ccgccaacat cgcagaattg
     8941 cagcgttgag cagttgccgt aagtttctgg ccctttacag ccgaggtggt acaggcacca
     9001 gccttcacgg tggccttcat caccgaactc tttggcaaaa cgaccagcat cgaagtgcgg
     9061 gcgacgttcg cagtgttcgt gaatcagacg gccataggcg aaggtcggac gatttttgtc
     9121 atccagtttc ggcggtttgc cgtaagtgat gatgtgcgca acggtcgcga ggaagttgtg
     9181 cgggttcggc gggcagcccg gaatattgat aacggttttg cctggcagaa cttcttgcag
     9241 gctgactgcg ccagttgggt taactccagc tgcggcaaca ccgccccacg cagagcagga
     9301 accgatagcg ataatcgcgg ctgcgccttc tgccgctttg cggatgtgat ccacaatcgg
     9361 ctcaccagca accatgcaat aaataccgtt atcttttaat gggatggaac catccacaac
     9421 caacacatac tgccctttgt acttctcaag tgcgttatgt ttgttctctt cgacctgatg
     9481 accgaaggcg gcggaaagca cttcgtgata ctccagagag atagtctcca gcacgaggtt
     9541 ttctaccgtt ggatgcgttg cacgaagcag agattccgta caaccggtgc actcctgcgc
     9601 gccaatccag ataactggcg gacgctgcgg gttagtaacc gattcggcca tctctgcagc
     9661 ggctttgcta cttaacccca tggtggcggc taatgctgca caaagcttca tgaaatcacg
     9721 acggttaatg ccgtgagaat ggatgagggt gttatctcca gtcatttata gttattccgt
     9781 tgcgaagacc tggcatatat tttgcttcaa tcgcaaaatc aataatgcga tcgatgcgcc
     9841 atttaccaca catttattat ggttatcgat atcatgatac tgcggcgggg cgctaaaacg
     9901 aagggaagaa gcattagtgt aattaattaa agcaagataa tacgtatgtt tgatcaattt
     9961 tcgaggcgat aaccggccat aaaaaagcgc aacgtagaac aggaattatt ctcacgaaag
    10021 aaatccatta ccatctcttt atccagtcca tagcggcgcg tcagaatacc cgcttcccag
    10081 gcgctaagct ggcgatctcc ggtcttttcg tacatccggt gtgagtagcc taatacaaaa
    10141 ccgcgtttat aatcggcaca gaattttgtc acattaaccg cactgtcggc atgcgttgct
    10201 tttaatcccg ccattaagcc tttaccaaaa tggttattca tcgttcacct cattcgctat
    10261 atattatcat atatagcgat attttaggca aagaacgact tttgcgcacg ctattttttc
    10321 atgcttgttt aagacgtaat cccgtaagag ataaacccat caggagagat atttatcgaa
    10381 ccatttcagc gtcctttgcc aggcaagatc ggcggcagat ttgtcataac gaggcgtgga
    10441 atcattatgg aatccgtgat taacccccgg atagatatac gcctcataga ccttattatt
    10501 ggctttcaac gccgcctcat aagcgggcca gccctcgttg attcgggtgt ccagttccgc
    10561 gaagtggagt agtaaaggcg cttcaatctt cgccacatcg gcagtgggtg cctgacgacc
    10621 ataaaacggc accgcgcagg ccagttccgg atacgcgaca gccgccgcgt tcgatacgcc
    10681 accgccatag caaaatccgg taatacccac tttgcctgtc gcttgcggat agcgttgcat
    10741 aaactcaatt gcggcaaaga aatcattcat cagtttggtt ggatcaacct gctgttgcag
    10801 ctcacgacct ttatcatcat ttcccggata acctcca
//
LOCUS       DAJVUN010000130        10811 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.130, whole genome shotgun sequence.
ACCESSION   DAJVUN010000130 DAJVUN010000000
VERSION     DAJVUN010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10811
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.130"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..890)
                     /locus_tag="OQQ76_002939"
                     /pseudo
     CDS             complement(1..890)
                     /locus_tag="OQQ76_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310495.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
     gene            complement(1018..2979)
                     /gene="topB"
                     /locus_tag="OQQ76_002940"
     CDS             complement(1018..2979)
                     /gene="topB"
                     /locus_tag="OQQ76_002940"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HCS1969360.1"
                     /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH
                     LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG
                     DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
                     SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA
                     KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV
                     TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR
                     YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSE
                     INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL
                     GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ
                     DKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT
                     RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG
                     SADKKKAAPRKRSAKKSPPADEVGSGAIA"
     gene            complement(2984..4027)
                     /gene="selD"
                     /locus_tag="OQQ76_002941"
     CDS             complement(2984..4027)
                     /gene="selD"
                     /locus_tag="OQQ76_002941"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HCS1969361.1"
                     /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV
                     GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA
                     IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE
                     RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN
                     IKGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYDAIPKLPGVEEYIKLGAVPGGTER
                     NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGEL
                     VPARGGRAMVEIR"
     gene            complement(4144..4695)
                     /locus_tag="OQQ76_002942"
     CDS             complement(4144..4695)
                     /locus_tag="OQQ76_002942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H nitroreductase"
                     /protein_id="HCS1969362.1"
                     /translation="MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQP
                     WHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKV
                     PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
                     GTPQLKASTSINVPDPTLFVTYF"
     gene            4856..6712
                     /gene="sppA"
                     /locus_tag="OQQ76_002943"
     CDS             4856..6712
                     /gene="sppA"
                     /locus_tag="OQQ76_002943"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707347.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HCS1969363.1"
                     /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ
                     VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN
                     TIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY
                     YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD
                     DMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYA
                     LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN
                     GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA
                     RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV
                     HTDGVSTSPLADVSITRALPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ
                     GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG
                     SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANVR"
     gene            6879..7895
                     /gene="ansA"
                     /locus_tag="OQQ76_002944"
     CDS             6879..7895
                     /gene="ansA"
                     /locus_tag="OQQ76_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HCS1969364.1"
                     /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP
                     EMPDFTIHEYTPLMDSSDMTPDDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS
                     FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR
                     TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY
                     PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG
                     KVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL
                     TPDD"
     gene            7906..8547
                     /gene="pncA"
                     /locus_tag="OQQ76_002945"
     CDS             7906..8547
                     /gene="pncA"
                     /locus_tag="OQQ76_002945"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HCS1969365.1"
                     /translation="MPHRALLLVDLQNDFCAGGALAVPEGDSTVEVANRLIDWCQSRG
                     EAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLNQ
                     KAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFT
                     VLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG"
     gene            complement(8708..8980)
                     /locus_tag="OQQ76_002946"
     CDS             complement(8708..8980)
                     /locus_tag="OQQ76_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707337.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaC family protein"
                     /protein_id="HCS1969366.1"
                     /translation="MNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL
                     VMLWQARHNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK"
     gene            complement(9022..9435)
                     /gene="msrB"
                     /locus_tag="OQQ76_002947"
     CDS             complement(9022..9435)
                     /gene="msrB"
                     /locus_tag="OQQ76_002947"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HCS1969367.1"
                     /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY
                     HCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL
                     GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING"
     gene            9777..10772
                     /gene="gapA"
                     /locus_tag="OQQ76_002948"
     CDS             9777..10772
                     /gene="gapA"
                     /locus_tag="OQQ76_002948"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006322611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCS1969368.1"
                     /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM
                     LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT
                     DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK
                     VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE
                     DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK"
BASE COUNT         2613 a         2835 c         2620 g         2743 t
ORIGIN      
        1 ccagtaaaga aatcccatta gactattttt ttgataatct tcttcgcttt cgaacaactc
       61 gtgcgccttt cgagaagcaa gcattatata atgccaggct agttcttctt caattgtccc
      121 gttttgaaaa gctgtgcttg atatcgagat catccatgat aattccgccg cccatattag
      181 cttcgccgag gatttaccgg agcgattatt agcgcaatca gagatatagt ctgagggaaa
      241 aacagcaaat ttattcaaca aggcgataac ctgctctggg gcttcctcca tgtttgcttt
      301 aaaggtattg gctccatggt cgccagaaag aaaatgctcc attaaggcac aataactttc
      361 gctatcttcg ataccccatt gattctctaa agactcgcgt cttttactta tgatatcgat
      421 cgagtcaaaa ggaagcacat gatattggaa ggtatctttg ccaggttcag gctttcgcgg
      481 ccagaactcc agcgtttcag accattgctt atgatagaat cgataaggtg cgatcaattg
      541 tagcgcctgt aacttctcga tactgagcgg ctcaatacct ttagcctgat aataatgcag
      601 ttgttctttt ttgctttaaa accggcccga acaataagcc ccatcataat taatagataa
      661 agaaaagagc atcccgcggt aatcaggcct ctttcattca aaccgttgga tgttatcgct
      721 gcgaacacaa acattacagc gacaacacat gttaaataaa acccccactt acaaagcagc
      781 atggccttat tttctttaat catccgttca aaattactat taaatatttc ccagccatta
      841 aaagaatact tctcgctccc aggatggttt tgtaataaaa cttttttcat cacattccct
      901 gttattacat actttagagg cgataatttt atccatgcaa aaaaaatatc caacgaattt
      961 tcttgattcg ctggatattt cagaatatga ctcgaatagc acgaaagatt cactcgctta
     1021 cgctatcgcc ccgcttccga cttcatctgc tggcggactt tttttcgcac tacgtttacg
     1081 cggtgcagcc tttttcttat cagcactgcc accactgccc ggagccacaa tgccgcgaaa
     1141 ctgccgcacc ggcgtacgtt tggcttgatc aataagctga tatagcgtcc ccaccagcgg
     1201 ctgcataaag tcctgatagc gacactgctt ttcgctgatt tgcgtcagca ccgattccca
     1261 gtgcgcggtc atgtccggtc gcgtcgccat ttctggcagc gaatggaata acgcttttcc
     1321 ggcgtcggta gagtggatat agcgcccttt tttggtcaga aaaccacgct tgaacagcag
     1381 ttcaataatc ccggcacggg ttgcttctgt ccccagacca tcggtcgcac gaaggatctt
     1441 tttcagatct ttgtcctgca caaagcgcgc gatcccggtc atcgccgaaa gtagtgttgc
     1501 atcggtaaaa tggcgcggcg gctgggtttg ccgctctacc acttcacctt tttcacacag
     1561 caactcatcg cctttcgcca ccacaggcaa tggcgtaccg tcgttttctt catcgcgctc
     1621 tttgctgcct aacagcgtgc gccagcctgc ttcagcaaga aaacgcgctt tagcgacaaa
     1681 tttgcctttg gcaatgtcca gttcgataac acacttgcgg aacaccgcat ccgggcagaa
     1741 ctgcatcaag tactgacggg caatcaggtt atagaccttc gcttcgttct ccgtcaggtt
     1801 gatctcagaa ctccgtgcgg tcgggatgat ggcgtggtgt gcatcgacct ttttgtcatc
     1861 ccaacagcgg ttgcgtatat ctggatctac cactggttgc ggcaacagat ctggtgcatg
     1921 aacgctgatg gcattcatca ccgcgtggcg tccggcaaaa tgttcttctg gcaaatagcg
     1981 acaatcggaa cgcggataag tgattagctt gtgcgtttcg tacagcttct ggcagatatc
     2041 aagcacgttc tgcgcgctca gaccaaagcg ttttgccgct tcaatctgca acgccgaaag
     2101 cgaaaaaggc agcggcgcgg attctgattc ccgtttatcg ttatagctgg tgacaattgc
     2161 tggttgacca ctaatgcggt taaccacatg ctccgccagt ggacgatgta acaagcgccc
     2221 ttcttcatcc tggtacggtt cacacgcttc gctcggttgc cagatagcgg taaaccgctc
     2281 atcggcaggt gtcacgatat gtgctttgac ttcaaagaag tctttcgcca cgaagttttc
     2341 aatctcttca tcgcggcgca ccaccagccc gagcacgggt gtctgcacgc gtcccacgga
     2401 aagtacgccc tgataaccgg cattgcgacc gagaatggta tacgcacggg tcatattgat
     2461 gccgtacagc cagtcggcac gcgctcgcgc cagcgcagaa acgcacaatg gcacaaactc
     2521 actgttggac cgaagacggt cgatcgcccg ctcaaccgcc tgcgggttca ggtcgtttat
     2581 caagcaacgc tgcacctgct ggcgcttttc cggtgccagt tgcagatagt ccagcacttc
     2641 atccaccagc agttgccctt cacgatccgg gtccccggcg tgaacgattt cgctggcttc
     2701 atgcaggaag cgtttgatga cgttaagttg tttggtcacg gagggtcggg gctgtaattg
     2761 ccacttttcc gggacaatcg gcaaatccgc aagattccag cgcgcatagc ggctgtcgta
     2821 ggcgtctggc tgcgcctgct caagcaggtg accgatacac caggtcacca cctgaccatt
     2881 accgcactcg ataaagccat cgcctttccg gtgcggtttg ggcaggacat cagcaatggc
     2941 gcgcgccaga ctcggttttt cggcaataaa caaccgcatt gaattaacga atctcaacca
     3001 tggcacgacc gccgcgcgct ggcaccagtt cgccaattgc cgtcagttca atgccaaact
     3061 cggcggctgt agctttgacc tcattttctg cttccggcat gaccgccagc agcaaaccgc
     3121 cagaagtttg cggatcgcac agcaaatcgc gcacttcacg cggcatttca cccatcagat
     3181 gaccgtagct ggcaaagtta cgttcggtgc cgccaggcac tgcgcccaac ttaatgtact
     3241 cttcaacccc cggcaatttt gggatcgcgt catagtcaac gcgcgcctgc acacctgcgc
     3301 cctgacacat ttcgctcaaa tggcccagca gaccaaagcc cgtaacgtcg gtcatcgctt
     3361 ttacgccttt gatgttggca aaggacgcgc ctgcgatgtt catccggcac atcacttccg
     3421 tcgctagtcc ctgatgttct ggtttcagca gtgatttttt ctcagccgtg gtaagaacgc
     3481 cgatccccag cggtttcgtc aggaacagtt tgcatccggc ttgtgcggta ctgtttttct
     3541 tcacccgctc ggtcggtacg atccccgtta ccgccagacc aaaaatcggc tccggcgcat
     3601 cgatggagtg accgccagcc agcgcaatac ccgcctgacg gcatgcatag cgtccacctt
     3661 cggttacttc gcgggcaatt tccggggaaa gtttgttaat cggccagccg aggatcgcaa
     3721 tcgccataat cggtttgccc cccatcgcga agatatcgct gatggcgtta gtcgccgcaa
     3781 tgcggccaaa atcgaaagga ttatcaacga tcggcataaa gaagtcggtg gtactgataa
     3841 cgctggtgcc attgcccaga tcgtacaccg ccgcatcgtc gcgggtctca ttacccacaa
     3901 gcaaattcgg atcaacaaac ttcgcctgct cactgtgcag gatggtttcc aacacttttg
     3961 gggaaatttt acagccgcaa ccagctccgt ggctgtattg ggtcaaacga atcgagttct
     4021 cgctcatgga catctcctgt caatgcaatc cgggtatggt aaccctcatt ccgtgaagtg
     4081 ataagtgaga gtgtctgaat tcctgcgcct ttgctcacaa tccagacagt ttcgcgacaa
     4141 ttatcagaaa taagttacaa acagcgtcgg gtccgggacg ttaatcgacg tagatgcttt
     4201 caactgcggc gtgccgaggt agagaaaacc gacaatttta tcctgctcac ggcaaccgaa
     4261 tgcttcacgc actaccggac tttcagttaa tgcgccactg cgccagatgc cgccaaatcc
     4321 ctgggcaacg gctgccattt gcatcgccat gaccgcgcat ccggcagaca tttcctgttc
     4381 ccatcgcggg actttatgat tttcttcgca tttcgccacc accgtgatga tgagcggtgc
     4441 gcggaacggc gcattacggg ctttgtcgat agctttgtca tcactaccgg cagcaatcgc
     4501 cccctgttcc agtacggcgc tgaaacgctc gcgcccttcc ccttcaatca caaaaaaatg
     4561 ccacggttgc atggacttat ggtccggcgc acgcataccc gcacgcagga tgttttgcag
     4621 ttgttcaccc gttggcgcgg gttcagccag gcgggaggcg ctacggcgat tgatcaatag
     4681 ttcgagtgca tccatttgat taactcctgt cgtgatattt attcacaaaa ttaacacgag
     4741 agtggatttt gttacagcac agtccgcaat tcctgctgac aagtgccggt tgggtcatta
     4801 cgataaccac atctattgcg cctgtgacag gtgtgacctt aagttgggag aatacatgcg
     4861 aaccctttgg cgatttattg ccggattttt taaatggacg tggcgtctgc tgaatttcgt
     4921 ccgtgaaatg gtacttaacc tgttctttat tttcctcgta ctggttggtg tggggatctg
     4981 gatgcaggtc agtggtggtg attcgaaaga aacggccagt cgtggcgcac tgctgctgga
     5041 catttccggt gtgatcgtcg ataaacccga cagttctcag cggtttagta aattaagccg
     5101 ccagctgctt ggtgccagtt ccgatcgtct gcaggaaaac tcactgtttg atatcgtcaa
     5161 caccattcgc caggcgaagg acgaccgcaa tatcaccggt atcgtgatgg atctgaaaaa
     5221 cttcgcaggc ggcgaccagc cgtctatgca gtacatcggc aaagccctga aagagtttcg
     5281 tgacagcggg aaaccggttt atgccgttgg cgagaactac agccaggggc aatattatct
     5341 cgccagtttc gccaataaaa tttggctgtc accgcaaggc gtggttgatc tgcacggttt
     5401 tgctaccaac ggtctgtact acaaatcgtt gctggataag ctgaaagttt ccacccatgt
     5461 gttccgcgtg ggtacgtata aatctgccgt tgaaccgttt attcgtgatg atatgtcacc
     5521 ggcagcccgc gaagctgaca gccgctggat tggtgagctg tggcaaaact atctgaatac
     5581 tgttgccgct aaccggcaga tccctgctca gcaggtattc cctggcgcgc aagggttgct
     5641 tgagggttta accaaaaccg gtggcgatac cgcgaaatat gcactggaaa acaagctggt
     5701 cgatgcactg gcatcgagtg ccgaaatcga aaaagctctg accaaagagt tcggctggag
     5761 taagactgat aaaaattatc gcgccatcag ttattacgat tacgcattga aaacgccggc
     5821 agataccggt gacagcatcg gtgtcgtctt cgctaatggc gcaattatgg atggcgagga
     5881 aactcagggg aatgttggcg gtgataccac tgcggcacaa atccgcgacg ctcgccttga
     5941 cccgaaagtg aaagcgattg tcctgcgtgt taatagccca ggcggcagcg ttaccgcgtc
     6001 tgaagtgatt cgcgctgaac tggcagcagc ccgggcagcg ggtaagcctg tggttgtatc
     6061 gatgggcggc atggcggcat ctggtggtta ctggatttcc acgccagcta attacattgt
     6121 ggctaacccc agcaccctga ccggttctat cggtatcttc ggcgtgatca ccaccgtaga
     6181 aaatagtctg gattcgattg gtgttcatac tgatggtgtc tcaacttcac cgctggcgga
     6241 tgtttctatc accagggcac tgccgccgga agcgcagcag atgatgcaat taagcattga
     6301 gaatggctat aaacgcttta tcacgctggt tgctgatgcg cgtcattcga cgccggagca
     6361 aattgataaa atcgcccagg gccacgtctg gaccggtcag gatgcaaaag ctaacgggct
     6421 ggtcgatagt ctcggggatt tcgatgatgc ggttgccaaa gcagcagagc tcgcaaaagt
     6481 gaaacagtgg catctggaat actacgttga tgaaccgacc ttcttcgaca aagtgatgga
     6541 caacatgtct ggttctgtcc gggcaatgtt gccagatgcg ttccaggcca tgttacctgc
     6601 accgcttgcc tcggtagcct ctaccgttaa aagtgaaagc gacaagctgg ccgcgtttaa
     6661 cgacccacaa aaccgttatg cgttttgcct gacctgcgcc aacgtgcgtt aagtcttgta
     6721 ctgagtggcc gacagatcgt cggccacatt attttttacc tcgacgaatc ctcttcccgc
     6781 tgtctcgccc catatttcct tatccgcata gtatcaggtg cgctcctcct gcctcacgta
     6841 tatacttttg ctctttcgat atcattcata tcaatatcat gcaaaagaaa tcaatttacg
     6901 tcgcctacac gggcgggacc atcgggatgc agcgttccga gcagggttat attccggtgt
     6961 caggtcatct acaacgccaa ctggcgctga tgccggaatt ccatcgcccg gagatgccag
     7021 atttcaccat tcatgaatat acgccgttga tggattcttc tgatatgacg ccggatgact
     7081 ggcagcatat tgctgaagat attaaagcgc actatgacga ctatgatggt tttgtcattc
     7141 tacacggtac cgacacgatg gcgtataccg cctctgcgct gtcgttcatg ctcgagaatc
     7201 tcggtaaacc ggtcattgtg acagggtcac aaatcccgct ggctgagtta cgctctgacg
     7261 gacaaattaa tctgctgaat gcgttgtacg ttgcggcgaa ttatccgatc aacgaagtaa
     7321 cgctcttttt caataaccga ttgtatcgcg gcaaccgcac taccaaagcc catgccgatg
     7381 gttttgatgc gtttgcctct ccaaaccttc ctccgttact ggaagctggt atccatattc
     7441 gtcgtttgaa tacgccaccc gccccgcacg gtgaagggga attaatcgtt catccaatca
     7501 cgccacaacc aattggcgta gtgacgattt atccggggat ttctgctgat gtcgtgcgca
     7561 attttctgcg ccaaccggtg aaagcattga ttctgcgctc ctatggcgtg ggtaatgcgc
     7621 cacaaaacaa agccttcctg caggaattac aagaagccag cgatcgcggt attgtggtgg
     7681 tcaacctgac acaatgtatg tccggtaaag tgaatatggg tggttatgcc accggtaacg
     7741 ccctcgccca tgccggcgtt attggcggtg cagatatgac tgtagaagcc acgctaacca
     7801 aactgcatta cctgctgagc caggaactgg atactgaaac cattcgcaag gccatgagcc
     7861 aaaacctgcg cggcgaactg acgccggatg attaaggaga ctgcaatgcc ccatcgcgcc
     7921 ctgttactgg tcgatttaca aaatgatttc tgtgctggtg gcgcgctcgc cgtaccggaa
     7981 ggtgacagta cggtggaggt tgctaaccgc cttattgact ggtgccagtc gcgcggagaa
     8041 gcggttatcg ccagccagga ctggcatccg gcgaatcacg gcagttttgc cagtcagcac
     8101 ggtgtagagc cttatacgcc aggccaactc gacggtttgc cacaaacctt ctggccagat
     8161 cactgtgtgc agaacagtga aggcgcacaa ttacatccgt tactgaacca aaaagcgatc
     8221 gcagcggtgt tccataaagg cgaaaatcct ttagttgaca gttacagtgc cttttttgat
     8281 aacggccgtc ggcagaaaac ctctctcgat gactggttac gcgatcatga aatcgatgaa
     8341 ttgatcgtta tgggcctggc tactgactat tgcgtgaagt ttaccgtgct ggacgcgtta
     8401 cagttaggtt ataaggtgaa cgtgattacc gatggttgtc gtggcgtgaa tatccagccc
     8461 caggacagtg cacacgcgtt tatggagatg tcagcagctg gggcaacgct atatacgctg
     8521 gcagactggg aagagacaca ggggtaatat tagttgaatt catctctggc ctacatttcc
     8581 tcaatgacat tgtaggccag ataatacttg tcagtgttgc atttaaccta cttgcagcta
     8641 aaacacgacg tccgaacaag tatatttgcc ctcccttaat aacaggctta aatactagat
     8701 aactcattca cttaaacata gcaataggct ttgctgagat accaaaatct tcttttaact
     8761 gctgtttgct cttcatgacc atctgaccat ttgtgtcaat tgtcatatgc tgtgcttcgg
     8821 tattatggcg ggcttgccac agcatcacca gttgcaggca attctctttt tgttcctcgg
     8881 tcaacgcaac gccatcaggc catttcccca gttcaacggc ggtcgacaaa cgctggtata
     8941 cctcaggcgt catgctgttg ataatgtcat caagattcat aatttttccg ctcctgtgga
     9001 ataagttgct gaatcgtttt ttcaaccgtt gatttcttcg ccgttttcgc catcagtgaa
     9061 gcgtaaagaa gcagagttaa cacaataacg ttcgcctgtt ggttgcggcc cgtcgggaaa
     9121 gacatgcccc agatgggcat cacagttacc gcaacgaatt tctatgcgct gcattccatg
     9181 tgacaagtct ttgatataac gaatggattc ttcactcacc ggttcgtaga aactgggcca
     9241 gccacagccg gaatcatact tggtttcgga atgaaacagc ggggcatcgc agatcaaaca
     9301 gtgatatacg ccgtcacgct tgttatgcag taaacgcccc gtaaatggcg gctctgtccc
     9361 atgattctgc gtcacgtaaa actgcatctc ggacaaattt tttttcagtt cttctgccga
     9421 aggtttatta gccatttgct cacatctcac tttaatcgtg ctcacattac gtgactgatt
     9481 ctaacaaaac attaacacca actggcaaaa ttttgtccta aacttgatct cgacgaaatg
     9541 gctgcaccta aatcgtgatg aaaatcacat ttttatcgta attgcccttt aaaattcggg
     9601 gagccgaccc catgtggttt caagcccaaa ggaagagtga ggcgagtcag tcgcgtaatg
     9661 cttaggcaca ggattgattt gtcgcaatga ttgacacgat tccgcttgac gctgcgtaag
     9721 gtttttgtaa ttttacaggc aaccttttat tcactaacaa atagctggtg gaatatatga
     9781 ctatcaaagt aggtatcaac ggttttggcc gtatcggtcg cattgttttc cgtgctgctc
     9841 agaaacgttc tgacatcgag atcgttgcaa tcaacgacct gttagacgct gattacatgg
     9901 catacatgct gaaatatgac tccactcacg gccgtttcga cggtaccgtt gaagtgaaag
     9961 acggtcatct gatcgttaac ggtaaaaaaa tccgtgttac cgctgaacgt gatccggcta
    10021 acctgaaatg ggacgaagtt ggtgttgacg ttgtcgctga agcaactggt ctgttcctga
    10081 ctgacgaaac tgctcgtaaa cacatcaccg ctggtgcgaa gaaagtggtt atgactggtc
    10141 cgtctaaaga caacactccg atgttcgtta aaggcgctaa cttcgacaaa tatgctggcc
    10201 aggacatcgt ttccaacgct tcctgcacca ccaactgcct ggctccgctg gctaaagtta
    10261 tcaacgataa cttcggcatc atcgaaggtc tgatgaccac cgttcacgct actaccgcta
    10321 ctcagaaaac cgttgatggc ccgtctcaca aagactggcg cggcggccgc ggcgcttccc
    10381 agaacatcat cccgtcctct accggtgctg ctaaagctgt aggtaaagta ctgccagaac
    10441 tgaatggcaa actgactggt atggcgttcc gcgttccgac cccgaacgta tccgtagttg
    10501 acctgaccgt tcgtctggaa aaagctgcaa cttacgagca gatcaaagct gccgttaaag
    10561 ccgctgctga aggcgaaatg aaaggcgttc tgggctacac cgaagatgac gtagtatcta
    10621 ccgatttcaa cggcgaagtt tgcacttccg tgttcgatgc taaagctggt atcgctctga
    10681 acgacaactt cgtgaaactg gtatcctggt acgacaacga aaccggttac tccaacaaag
    10741 ttctggacct gatcgctcac atctccaaat aagttgagat gaaactgtga tctaaaaaga
    10801 gcgacttcgg t
//
LOCUS       DAJVUN010000131        10802 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.131, whole genome shotgun sequence.
ACCESSION   DAJVUN010000131 DAJVUN010000000
VERSION     DAJVUN010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10802
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.131"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            142..2010
                     /gene="kup"
                     /locus_tag="OQQ76_002949"
     CDS             142..2010
                     /gene="kup"
                     /locus_tag="OQQ76_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity potassium transporter Kup"
                     /protein_id="HCS1969369.1"
                     /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV
                     ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML
                     VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
                     GTAMVGKLFAPIMLTWFLILAGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIAL
                     GAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNP
                     FFLLAPDWALIPLLIIAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES
                     GQIYIPFVNWMLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARQNWHW
                     NKYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIVMTTWKSERFRLLRR
                     MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALMHNLKHNKVLHERVILL
                     TLRTEDAPYVHNVRRVQIEQLSLTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMME
                     TSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI"
     gene            2177..2596
                     /gene="rbsD"
                     /locus_tag="OQQ76_002950"
     CDS             2177..2596
                     /gene="rbsD"
                     /locus_tag="OQQ76_002950"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HCS1969370.1"
                     /translation="MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMAL
                     TQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIR
                     YTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF"
     gene            2604..4073
                     /gene="rbsA"
                     /locus_tag="OQQ76_002951"
                     /pseudo
     CDS             2604..4073
                     /gene="rbsA"
                     /locus_tag="OQQ76_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418205.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
     gene            4078..5032
                     /gene="rbsC"
                     /locus_tag="OQQ76_002952"
                     /pseudo
     CDS             4078..5032
                     /gene="rbsC"
                     /locus_tag="OQQ76_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882531.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
     gene            5057..5943
                     /gene="rbsB"
                     /locus_tag="OQQ76_002953"
                     /pseudo
     CDS             5057..5943
                     /gene="rbsB"
                     /locus_tag="OQQ76_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312720.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
     gene            6069..6998
                     /gene="rbsK"
                     /locus_tag="OQQ76_002954"
     CDS             6069..6998
                     /gene="rbsK"
                     /locus_tag="OQQ76_002954"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HCS1969371.1"
                     /translation="MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKG
                     ANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV
                     NGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK
                     TIVALNPAPARELPDELLALVDIITLNETEAEKLTGIRVENDEDAAKAAQVLHEKGIR
                     TVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIR
                     FAHAAAAIAVTRKGAQPSVPWREEIDVFLDRQR"
     gene            7002..7994
                     /gene="rbsR"
                     /locus_tag="OQQ76_002955"
     CDS             7002..7994
                     /gene="rbsR"
                     /locus_tag="OQQ76_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon transcriptional repressor RbsR"
                     /protein_id="HCS1969372.1"
                     /translation="MATMKDVSRLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELN
                     YAPSALARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ
                     RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
                     SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRVAMKRAGLNIPDGYEVTG
                     DFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDI
                     ELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILMERGSA"
     gene            complement(7960..9387)
                     /gene="mdtD"
                     /locus_tag="OQQ76_002956"
     CDS             complement(7960..9387)
                     /gene="mdtD"
                     /locus_tag="OQQ76_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtD"
                     /protein_id="HCS1969373.1"
                     /translation="MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRS
                     PLAMQSAIISYTLTVAMFIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQL
                     VVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVT
                     WATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELF
                     GEKIVASWIALTVIVTSIGLLLLYILHARHTPNPLISLDLFKTRTFSIGIVGNIATRL
                     GTGSVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGI
                     TVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGN
                     SVLAVTQQLSISLGVAVSAAVLRVYKGMEGTTTVEQFHYTFITMGIITVASAAMFMLL
                     KTTDGNNLIKRQRKSKPNRVPSESE"
     gene            complement(9410..10102)
                     /locus_tag="OQQ76_002957"
     CDS             complement(9410..10102)
                     /locus_tag="OQQ76_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HCS1969374.1"
                     /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPSEIELG
                     EQFGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQ
                     VIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKKNFRRERWIEVDMAW
                     HEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAF
                     KACQALLRSPDK"
     gene            10584..>10802
                     /locus_tag="OQQ76_002958"
     rRNA            10584..>10802
                     /locus_tag="OQQ76_002958"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         2673 a         2579 c         2847 g         2703 t
ORIGIN      
        1 aagggggggt atttttcttt gagccaggtt aatgtggccg catttaggag tacgattttg
       61 ccgttaatcg tgcatactgt gcgctttttt gtgggccaag ggactaagca cacatttcat
      121 atttcaacga aagactagtc tatgagcact gataataagc aatcattgcc cgcgattacc
      181 ctcgcggcga ttggagttgt ctacggcgat attggtacca gcccgttata tacacttcgt
      241 gaatgtttgt ccggccagtt tggttttggc gttgaacgcg atgccgtgtt tggcttttta
      301 tcgctgatct tctggctgct aatctttgtg gtttccatta aatatctcac cttcgtgatg
      361 cgggcagata acgccggtga gggggggatc ctgacgttga tgtcgcttgc cgggcgtaat
      421 acgtcggcac gaaccacatc aatgctggtg attatggggc taatcggcgg cagctttttc
      481 tatggtgaag tcgtcataac acccgctatt tcggtgatgt cagccattga aggtctggaa
      541 atcgtcgccc cgcagctgga tacctggata gttcccctct caattatcgt tctcacttta
      601 ttatttatga ttcaaaaaca tggcacggct atggtcggta agctgtttgc gccgatcatg
      661 ctgacctggt ttttgattct ggcaggactg gggttacgta gcattattgc taacccggaa
      721 gtgctgcatg cgctgaatcc aatgtgggcg gtgcatttct tccttgaata caaaacggtt
      781 tcttttattg cattaggggc agtggtgttg tcgattacgg gggtcgaggc gctgtatgct
      841 gatatggggc actttggtaa gttccctatt cgcctggcgt ggttcaccgt cgtattacct
      901 tccttgaccc ttaattactt cggtcagggg gcgctgttgt taaagaaccc ggaagcgatt
      961 aagaacccgt tcttcctgtt ggcaccggac tgggcgctga tcccgctgct gatcatcgcc
     1021 gcactggcga cggtaattgc ctcgcaggcg gttatctctg gcgtcttctc attgacgcgt
     1081 caggcggtac gtctgggata tttgtcgccg atgcgcatta ttcacacctc cgaaatggag
     1141 tcagggcaaa tctatattcc gtttgtgaac tggatgctct atgtcgcggt cgtgattgtg
     1201 attgtcagct ttgagcactc cagcaacctg gcggcggcgt acgggattgc ggtgaccgga
     1261 accatggtgc tgacgtctat tctctcgact accgtggcac gtcagaactg gcactggaat
     1321 aagtattttg ttgcgctgat cctgattgct ttcctttgtg tcgatattcc attgttcacc
     1381 gctaacctcg ataaactgct ctccggcggt tggttgccat tgagcctcgg tacggtgatg
     1441 tttatcgtga tgaccacctg gaagagcgag cgtttccgct tgctgcggcg gatgcatgaa
     1501 catggtaact ctctggaagc gatgattgct tcgctggaga aatcaccgcc tgttcgcgtg
     1561 cccgggaccg cggtgtatat gtcgcgtgca atcaacgtca ttccctttgc gctgatgcat
     1621 aaccttaaac ataacaaggt attgcatgag cgggtgattt tgttaactct gcgtaccgaa
     1681 gacgcgccat atgtccataa tgtccgtcgg gtacagattg aacaactgtc gctcactttc
     1741 tggcgcgtgg tggcaagtta tggttggcga gaaacgccaa acgtggaaga agttttccac
     1801 cgctgcggtc tggaaggatt aagttgccgg atgatggaaa cctccttctt tatgtcgcat
     1861 gagtcgttga tcctcggcaa acgcccgtgg tatttgcgtc tgcgcggcaa gctgtacttg
     1921 ctgctgcaac gtaatgcgct gcgtgcacca gatcaatttg aaatcccgcc aaacagggtt
     1981 atcgaactgg gtactcaggt cgaaatctaa cgccagacgc ctcctttctc cataaggggg
     2041 cgtttttgtt ttcatggtta atcaccatgt aaaacgtttc gaggttgatc acatttccgt
     2101 aacgtcacga tggttttccc aactcagtca ggattaaact gcgggtcagc gaaacgtttc
     2161 gctgatggag aaaaaaatga aaaaaggcac cgttcttaat tctgatattt catcggtgat
     2221 ctcccgtctg ggacataccg atacgctggt ggtgtgtgat gctggtttac ccatccccaa
     2281 aagtacaacg cgtatcgata tggcattaac ccagggtgta ccttctttta tgcaggtgct
     2341 gggcgtcgtt acaaatgaaa tgcaggtcga ggctgccatt atcgcggaag agatcaaaca
     2401 acataatccg caactccacg aaacgttgct cactcacctt gagcagctgc aaaaacacca
     2461 gggaaatacc attgaaattc gttacaccac gcatgaacaa ttcaaacaac aaaccgcaga
     2521 aagtcaggcg gtaattcgca gcggagaatg ttctccgtat gcgaatatca ttctctgtgc
     2581 tggcgtgacg ttctgaggcc gtcatggaag cattacttca gcttaaaggc atcgataaag
     2641 ccttcccggg cgtaaaagcc ctctcgggcg ctgcgttaaa tgtctatccg ggccgcgtga
     2701 tggcgctggt gggcgaaaac ggcgcgggta aatccaccat gatgaaagtg cttactggta
     2761 tctatgctcg cgatgccggc acgcttttat ggctggggaa agaaacgaca tttaccgggc
     2821 cgaaatcttc ccaggaagcc gggataggga ttatccatca ggaactgaac ctgatcccgc
     2881 agttgaccat tgccgaaaac attttcctcg gtcgtgagtt tgttaatcgc tttggcaaaa
     2941 ttgactggaa aaccatgtat gccgaagcgg ataaattgct ggctaaactt aacctgcgct
     3001 ttaaaagcga caagctggtg ggcgatcttt ccatcggtga ccagcaaatg gttgaaatcg
     3061 ccaaagtgct gagctttgag tcgaaagtca tcattatgga tgaaccgacc gatgcgctga
     3121 ccgataccga aacagaatcc ctgttccgcg tcatccgcga actaaaatcg caaggccgcg
     3181 gtattgtcta tatctcccac cgcatgaaag aaatcttcga gatttgcgat gccgttaccg
     3241 tttttcgtga cgggcaattt attgctgagc gcgaagtggc atcactgacc gaagattcgc
     3301 tgattgagat gatggtgggt cgcaagctgg aagatcaata tccacacctg gacaaagcgc
     3361 cgggagatat ccgcctgaaa gtcgataatc tctgcggacc tggcgttaac gatgtctctt
     3421 ttactttacg caaaggcgaa attcttggcg tctctggttt gatgggcgca ggtcgtaccg
     3481 aactgatgaa agtgctctac ggcgcactac cgcgcaccag cggttacgtc accctggatg
     3541 ggcatgaagt cgttacccgt tcaccgcagg atggcctggc aaacggcatt gtgtatatct
     3601 ccgaagaccg taaacgtgac ggtttagtgt tgggcatgtc agtaaaagag aacatgtcgc
     3661 tgacagcgct gcgctacttc agccgcgctg gcggcagttt gaagcatgcc gatgaacagt
     3721 aggctgtgag tgatttcatt cgtctgttta atgtgaaaac accgtcgatg gaacaggcaa
     3781 ttggtctgct ttccggtggc aatcagcaaa aagtgttgat ccttgatgaa cctacccgtg
     3841 gcgtagatgt cggcgcgaaa aaagagatct atcaactgat taaccagttc aaagccgatg
     3901 gcttgagcat cattctggtg tcatcggaga tgccagaagt attaggcatg agcgatcgca
     3961 tcatcgtcat gcatgaaggg catctcagcg gggaatttac tcgtgagcag gccacccagg
     4021 aagtgttaat ggctgccgct gtgggcaagc ttaatcgcgt gaatcaggag taaaaaaatg
     4081 acaacccaga ctgtctctgg tcgccgttat ttcacgaaag cgtggctgat ggagcagaaa
     4141 tcgcttatcg ctctgctggt gctgatcgcg attgtctcga cgttaagccc gaactttttc
     4201 accatcaata acttattcaa tattctccag caaacctcgg tgaacgccat tatggcggtc
     4261 gggatgacgc tggtgatcct gacgtcgggc atcgacttgt ctgtaggttc tctgttggcg
     4321 ctaaccggcg cagttgctgc atctatcgtc ggcattgaag tcaatgcgct ggtggctgtc
     4381 gctgctgctc tcgcgttagg tgccgcaatt ggtgcggtaa ccggggtgat tgtagcgaaa
     4441 ggtcgcgttc aggcgtttat cgctacgctg gttatgatgc ttttactgcg cggcgtgacc
     4501 atggtttata ccaacggtag cccagtgaat accggcttta ctgagaacgc cgatctgttt
     4561 ggctggtttg gtattggtcg tccgctgggc gtaccgacgc cagtctggat catggggatt
     4621 gtcttcctcg cggcctggta catgctgcat cacacgcgtc tggggcgtta catctatgcg
     4681 ctgggcggca acgcgtcttt ctggtatcaa cgtcaataaa atcaaaatca tcgtctattc
     4741 tctttgtggt ctgctggcat cgctggccgg gaccattgaa gtggcgcgtc tctcctccgc
     4801 acaacccacg gcggggactg gctatgagct ggatgctatt gctgcggtgg ttctgggcgg
     4861 tacgagtctg gcgggcggaa aaggtcgcat tgttgggacg ttgatcggcg cattaattct
     4921 tggcttcctt aataatggat tgaatttgtt aggtgtttcc tcctattacc agatgatcgt
     4981 caaagcggtg gtgattttgc tggcggtgct ggtagacaac aaaaagcagt aataacgact
     5041 acaggacatc ttgaatatga acatgaaaaa actggctacc ctggtttccg ctgttgcgct
     5101 aagcgccacc gtcagtgcga atgcgatggc aaaagacacc atcgcgctgg tggtctccac
     5161 gcttaacaac ccgttctttg tatcgctgaa agatggcgcg cagaaagagg cggataagct
     5221 tggctataac ctggtggtgc tggactccca gaacaacccg gcgaaagagc tggcgaacgt
     5281 gcaggactta accgttcgcg gcaccaaaat tctgctgatt aacccgaccg actccgacgc
     5341 agtaggtaat gctgtgaaga tggctaacca ggcgaacatc ccggttatca ctcttgaccg
     5401 ccaggcaacg aaaggtgaag tggtgagcca cattgcttct gataacgtac tgggtggcaa
     5461 aatcgccggt gattacatcg cgaagaaagc gggtgaaggt gccaaagtta tcgagctgca
     5521 aggcattgct ggtacatccg cagcccgtga acgtggcgaa ggcttccagc aggccgttgc
     5581 tgctcacaag tttaatgttc ttgccagcca gcagattttg atcgcactaa aggtttgaac
     5641 gtaatgcaga acctgttgac cgctcatccg gatgttcagg ctgtattcgc gcagaatgat
     5701 gaaatggcgc tgggcgcgct gcgcgcactg caaactgccg gtaaatcgga tgtgatggtc
     5761 gtcggatttg acggtacacc ggatggcgaa aaagcggtga atgatggcaa actagcagcg
     5821 actatcgctc agctacccga tcagattggc gcgaaaggcg tcgaaaccgc agataaagtg
     5881 ctgaaaggcg agaaagttca ggctaagtat ccggttgatc tgaaactggt tgttaagcag
     5941 tagttttaat caggttgtat gacctgatgg tgacataaat acgtcatcga cagatgaacg
     6001 tgtaatataa agaaaagcag ggcacgcgcc accctaacac ggtggcgcat tttatggaca
     6061 tcccgaatat gcaaaacgca ggcagcctcg ttgttcttgg cagcattaat gctgaccaca
     6121 ttcttaatct tcaatctttt cctactccag gcgaaaccgt aaccggtaac cactatcagg
     6181 ttgcatttgg cggcaaaggc gcgaatcagg ctgtggctgc tgggcgtagc ggtgcgaata
     6241 tcgcgtttat tgcctgtacg ggtgatgaca gcattggtga gagcgttcgc cagcagctcg
     6301 ccactgataa cattgatatt actccggtca gcgtgatcaa aggtgaatca acaggtgtgg
     6361 cgctgatttt tgttaatggc gaaggtgaga atgtcatcgg tattcatgcc ggcgctaatg
     6421 ctgccctttc cccggcgctg gtggaagcgc aacgtgagcg tattgccaac gcgtcagcat
     6481 tattaatgca gctggaatca ccactcgaaa gtgtgatggc agcggcgaaa atcgcccatc
     6541 aaaataaaac tatcgttgcg cttaacccgg ctccggctcg cgaacttcct gacgaactgc
     6601 tggcgctggt ggacattatt acgctaaacg aaacggaagc agaaaagctc accggtattc
     6661 gtgttgaaaa tgatgaagat gcagcgaagg cggcgcaggt actgcatgaa aaaggtatcc
     6721 gtactgtact gattacttta ggaagtcgtg gtgtatgggc tagcgtgaat ggtgaaggtc
     6781 agcgcgttcc tggattccgg gtgcaggctg tcgataccat tgctgccgga gataccttta
     6841 acggcgcgtt aatcacggcg ttgctggaag aaaaaccatt gccagaggcg attcggtttg
     6901 cccatgctgc agctgcgatt gccgtaacac gtaaaggcgc acaaccttcc gtaccgtggc
     6961 gtgaagagat cgacgtattt ttagacaggc agaggtgacg cttggctaca atgaaagatg
     7021 tttcccgcct ggcgggcgtt tctacctcaa cagtttctca cgttatcaat aaagatcgct
     7081 tcgtcagtga agcgattacc gccaaagttg aagcggcgat taaagaactc aattacgcgc
     7141 catcagccct ggcgcgtagc ctcaaactca atcaaacaca taccattggc atgttgatca
     7201 ctgccagtac caatcctttc tattcagaac tggtgcgtgg cgttgaacgc agctgcttcg
     7261 aacgcggtta tagtctcgtc ctttgcaata ccgaaggcga tgaacagcgg atgaatcgca
     7321 atctggaaac gctgatgcaa aaacgcgttg atggcttgct gttactgtgc accgaaacgc
     7381 atcaaccttc gcgtgaaatc atgcaacgtt atccgacagt gcctactgtg atgatggact
     7441 gggctccgtt cgatggcgac agcgatctta ttcaggataa ctcgttgctg ggcggagact
     7501 tagcaacgca atatctgatc gataaaggtc atacccgtat cgcctgtatt accggtccgc
     7561 tggataaaac tccggcgcgc ctgcggttgg aaggttatcg ggtggcgatg aaacgtgcgg
     7621 gtctcaacat tcctgatggc tatgaagtca ctggtgattt tgaatttaac ggcgggtttg
     7681 acgccatgcg ccaactgtta tcacatccgc tgcgtcctca ggccgtcttt accggaaatg
     7741 acgctatggc tgttggcgtt taccaggcgt tatatcaggc agagttacag gttccgcagg
     7801 atatcgcggt gattggctat gacgatatcg aactggcaag ctttatgacg ccaccattaa
     7861 ccactatcca ccaaccgaaa gatgaactgg gggagctggc gattgatgta ctcatccatc
     7921 ggataaccca gccgaccctt cagcaacaac gattacaact tactccgatt ctgatggaac
     7981 gcggttcggc ttagatttac gctgtctttt gatcaaatta ttaccatcgg ttgttttcag
     8041 aagcatgaac attgctgctg aagcaacagt aataatgccc atcgtgataa acgtatagtg
     8101 gaattgttcg acagtcgttg tgccttccat ccctttataa acgcgaagga cggccgcact
     8161 tacagcaacg cctaaactaa tcgacagttg ctgcgtgacc gccagaacac tgttaccgct
     8221 gctggcgttg tcatcggtca gatcggcaag tgtgatggta ttcatcgcgg taaattgcgt
     8281 cgacatagcc atccctaata taaacaacgg caagatcagc atccatatcg ccattgccgg
     8341 tgattgcaaa gagaactgag cgatcattag cccaataatc accgtgatcc ccactaacgt
     8401 atggcgatag cccagacgac gtaagacttg ggtaaccatc gattttgcaa taatggaacc
     8461 taacgctgtc ggtgccatca tacagccggc aataaacgcc tgataaccaa atcctacctg
     8521 taacatcaat ggcataagga acggtacact accggtcccc agacgggttg caatattgcc
     8581 tacgataccg atcgagaaag tgcgggtttt aaataaatct aatgaaatta atgggtttgg
     8641 cgtgtgtcgc gcatggagaa tatagagaag cagtaacccg atgctggtga caattaccgt
     8701 caaggcaatc cagctggcga caatcttttc cccgaatagc tctattccgc ttgagaagag
     8761 aacaaggctg aggccaaaca gcaaaaagcc agtgatatcg aatctgcgtc gtgcggtggt
     8821 gaaattgggc atatgtttgc gcgcgtaaag aaggcccgca atacctatgg ggatattgat
     8881 taaaaatatc cagtgccagg ttgcccaggt gaccagcacg ccgccaagaa cggggcctaa
     8941 aattggcccc accagacccg gcatggcgac aaaattcaat acaggaagaa gttcattacg
     9001 aggataagca cgcagtaagg ccagccgagc aacaggcatc atcattgcgc cgcctatccc
     9061 ctgaataacc cggaagacaa ccagctgtgg tagcgaatta gaaagtgcgc aggccagaga
     9121 acccaacgtg aacagactca cggcaagggt aaaaatgcga cgcgtaccga agcgatcggc
     9181 tagccatccg cttaccggaa taaacatcgc caccgtcagc gtataactga tgatggctga
     9241 ttgcattgcg agaggagaac gattaaggct atgagcgatt gcgggtaagg cggtattcag
     9301 aatagtggca tcaagtgcct gcatgaagaa ggccatcgcc gcgatccacg gcaaacccgc
     9361 catactacgc ttctttttat cgctcattca atgtcctgtt atcgggttat cacttatcag
     9421 gtgagcgtag cagcgcctga caagctttaa atgccgcgtc gccatcgctt tggataatcg
     9481 catcgacaat cgcctggtgc agatccagct ttatcactgt gtcgctggta attgacgtga
     9541 agtaagtgtg ataaaccgaa tggaatagcg aggcgaatga ggtcaaaaac ggattggcgc
     9601 tcatttcata gatatgctca tgccaggcca tatcgacttc gatccagcgt tcacggcgaa
     9661 agttcttttt taatgccgcc atttcggcca ttaacgtatt gagatgcgcc ttctgttccg
     9721 cggtgccaac cgttgctgcc agtaggcagg cttgcggctc cagacagata cgcataacca
     9781 gaaagtgatc gatgacctga tgaaagttct cttctgtcat ccaccaggta agcaattcct
     9841 gatcaagaaa attccagttt gattgtggca tgacccgggt accaattcgc ggtcgcggta
     9901 aaaccatccc ttttgccgtt aacgttttga ccgcttcgcg taccgctgta cgactcactc
     9961 caaattgctc gcccagctca atctcactag gcaaaatggt gccgggttca tattcacctt
    10021 ttaagatgcg ttgcgccagc ttctcagcca gaacatacga aaggtttttc tgtgcagcta
    10081 actgttgtgc gcttaaaggc attactaatc ttcctttttc tttttattcc tccttagtat
    10141 gccaccagga agtgtgatta cggttgcaaa aacggcaaat tgcttgtttt atggcacatt
    10201 aacggggctt ttgctgaaaa agtgcgcggt cagaaaatta ttttaaattt cctcttgtca
    10261 ggccggaata actccctata atgcgccacc actgacacgg aacaacggca aacacgacgc
    10321 cgggtcagcg gggttctcct gagaatctca acagagaaaa gcaaaaaaaa atgcttgact
    10381 ctgtagcgga aaagtgtatt atgcacaccc cgcgccgctg agaaaaaacg aaacggcact
    10441 gctctttaac aatttatcag acaatctgtg tgggcactcg aagatacgga ttcttaacgt
    10501 cgcaagacga aaaatgaata ccaagtctca agagtgaaca cgtaattcat tacgaagttt
    10561 aattctttga gcatcaaact tttaaattga agagtttgat catggctcag attgaacgct
    10621 ggcggcaggc ctaacacatg caagtcgaac ggtaacagga agcagcttgc tgcttcgctg
    10681 acgagtggcg gacgggtgag taatgtctgg gaaactgcct gatggagggg gataactact
    10741 ggaaacggta gctaataccg cataatgtcg caagaccaaa gagggggacc ttcgggcctc
    10801 tt
//
LOCUS       DAJVUN010000132        10711 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.132, whole genome shotgun sequence.
ACCESSION   DAJVUN010000132 DAJVUN010000000
VERSION     DAJVUN010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.132"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1355
                     /gene="yeaV"
                     /locus_tag="OQQ76_002959"
     CDS             <1..1355
                     /gene="yeaV"
                     /locus_tag="OQQ76_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BCCT family transporter YeaV"
                     /protein_id="HCS1969375.1"
                     /translation="LSWLFMFICAGLGSSTLYWGVAEWAYYYQTPGLNIAPRSQQALE
                     FSVPYSFFHWGISAWATYTLASLIMAYHFHVRKNKGLSLSGIIAAITGVRPQGPWGKL
                     VDLMFLIATVGALTISLVVTAATFTRGLSALTGLPDNFTVQAFVILLSGGIFCLSSWI
                     GINNGLQRLSKMVGWGAFLLPLLVLIVGPTEFITNSIINAIGLTTQNFLQMSLFTDPL
                     GDGSFTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWGLILGSTVGCWFFFGV
                     MESYAIHQFINGVINVPQVLETLGGETAVQQVLMSLPAGKLFLAAYLGVMIIFLASHM
                     DAVAYTMAATSTRNLQEGDDPDRGLRLFWCVVITLIPLSILFTGASLETMKTTVVLTA
                     LPFLVILLVKVGGFIRWLKQDYADIPAHQVEHYLPQTPVEALEKTPVIPAGTVFKGDN
                     "
     gene            1387..2511
                     /gene="yeaW"
                     /locus_tag="OQQ76_002960"
     CDS             1387..2511
                     /gene="yeaW"
                     /locus_tag="OQQ76_002960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaW"
                     /protein_id="HCS1969376.1"
                     /translation="MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFA
                     KSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGK
                     AKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPN
                     ATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTSANWKNIVDNYLECYHCGPAHPG
                     FSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPI
                     KGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQK
                     GLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD"
     gene            2567..3532
                     /gene="yeaX"
                     /locus_tag="OQQ76_002961"
     CDS             2567..3532
                     /gene="yeaX"
                     /locus_tag="OQQ76_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaX"
                     /protein_id="HCS1969377.1"
                     /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVI
                     VQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTP
                     NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV
                     QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAAD
                     TLHFEQFAIEDKTGDAFTLVLACSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG
                     TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL"
     gene            complement(3586..4701)
                     /gene="rnd"
                     /locus_tag="OQQ76_002962"
     CDS             complement(3586..4701)
                     /gene="rnd"
                     /locus_tag="OQQ76_002962"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310540.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HCS1969378.1"
                     /translation="MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD
                     GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL
                     SAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA
                     KLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD
                     WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLTLVE
                     KVQTLPEEALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL
                     NWHWRLKPQNNLPELISGWRGELMAEALHNLLQEYPQ"
     gene            complement(4783..6468)
                     /gene="fadD"
                     /locus_tag="OQQ76_002963"
     CDS             complement(4783..6468)
                     /gene="fadD"
                     /locus_tag="OQQ76_002963"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HCS1969379.1"
                     /translation="MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVN
                     MGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV
                     NVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAK
                     GTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT
                     GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELG
                     GQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGG
                     MPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLV
                     DDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRI
                     VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSL
                     TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA"
     gene            complement(6673..7254)
                     /gene="yeaY"
                     /locus_tag="OQQ76_002964"
     CDS             complement(6673..7254)
                     /gene="yeaY"
                     /locus_tag="OQQ76_002964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein YeaY"
                     /protein_id="HCS1969380.1"
                     /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRV
                     MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN
                     GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
                     DPWFYGGRGWPYDYGGWGWYNPGPARVQTVVTE"
     gene            complement(7293..7988)
                     /gene="tsaB"
                     /locus_tag="OQQ76_002965"
     CDS             complement(7293..7988)
                     /gene="tsaB"
                     /locus_tag="OQQ76_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HCS1969381.1"
                     /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD
                     ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA
                     WRKNGATRVLAAIDARMGEVYWAEYQRDENGIWRGEETEAVLKPELVHERMQQLSGEW
                     VTVGTGWQAWPDLGKESGLVLRDGEVLLPATEDMLPIACQIFAEGKTVAVEHAEPVYL
                     RNNVAWKKLPGKE"
     gene            complement(8046..9956)
                     /locus_tag="OQQ76_002966"
     CDS             complement(8046..9956)
                     /locus_tag="OQQ76_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HCS1969382.1"
                     /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE
                     AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG
                     RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL
                     VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE
                     ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
                     QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA
                     AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW
                     IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSSFDYSRQALLCVPRNLPQTNQPGSAR
                     QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV
                     SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD
                     EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA
                     RAVRFLAIPSSR"
     gene            10088..10432
                     /locus_tag="OQQ76_002967"
     CDS             10088..10432
                     /locus_tag="OQQ76_002967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HCS1969383.1"
                     /translation="MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLA
                     QIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP
                     KYKVEIKIVAAV"
BASE COUNT         2535 a         2881 c         2674 g         2621 t
ORIGIN      
        1 cgctctcctg gctgtttatg tttatttgtg ccggtttagg ttcttctacg ctttattggg
       61 gggttgctga atgggcctat tattatcaaa cacctggatt aaatatcgca ccgcgttcac
      121 aacaggcact cgaatttagc gttccctact ctttcttcca ctggggcatc agcgcctggg
      181 caacttatac gctggcctca ttaatcatgg cttatcactt tcatgtgcgg aaaaacaaag
      241 gtctgagcct ttccggcatt attgctgcta ttaccggcgt tcgcccgcaa ggcccatggg
      301 gaaaactggt tgatttgatg ttcctgatcg ccactgtcgg cgcactgact atttcccttg
      361 ttgtcaccgc agcaaccttt actcgtggac tttccgcact gacaggttta cccgacaact
      421 tcaccgtgca ggcatttgtg atcctgcttt ctggcggcat tttttgccta agctcgtgga
      481 ttggtatcaa caacggtttg caacgtctga gcaaaatggt tggctggggc gcgttcctgc
      541 tgccattact ggtgctgatt gtcggcccaa ccgaatttat taccaacagc atcatcaatg
      601 ccatcggcct gaccacgcaa aacttcctgc aaatgagctt attcaccgat ccgcttggcg
      661 atggttcatt tacccgcaac tggaccgttt tctactggct gtggtggatc tcatacaccc
      721 ctggcgtagc aatgtttgtc acccgcgttt cccgcggtcg taagattaaa gaagttatct
      781 ggggactgat cctcggcagc accgtcggtt gctggttctt cttcggcgta atggaaagct
      841 atgccattca tcagtttatc aatggcgtaa tcaacgtccc acaggtgctg gaaacactgg
      901 gcggcgaaac agctgtacag caagttctga tgtcgttgcc agccggtaaa ttgttcctcg
      961 ccgcatacct gggcgtgatg attattttcc ttgcctcgca tatggatgca gtggcctaca
     1021 ccatggcggc gaccagtacg cgtaatctcc aggaaggtga cgatcctgac cgtgggctgc
     1081 gtcttttctg gtgcgtggtg atcactctga tcccgctttc catcttgttt accggtgctt
     1141 cgctggaaac gatgaaaacc accgtcgtgc tcacagccct tcccttcctc gtcattttac
     1201 tggtgaaagt cggcggattt attcgctggc tgaaacagga ttacgccgac attccggctc
     1261 atcaagttga acattatctc ccgcagacac cggttgaagc cctggaaaaa acaccagtga
     1321 tccctgcggg aaccgtattc aaaggcgaca actgagcgcc atcatcctaa cgataaaggt
     1381 atccctatga gcaatctgag ccctgacttt gtactacccg aaaatttttg cgctaacccg
     1441 caagaggcgt ggaccattcc tgcccgtttt tataccgatc agaacgcgtt tgaacacgaa
     1501 aaagagaacg tcttcgccaa aagctggatt tgcgtcgctc acagcagcga actggcgaat
     1561 gccaatgatt atgtgacgcg tgagatcatt ggcgaaagca tcgtgctggt acgcggtcgt
     1621 gataaggttt tgcgcgcgtt ctataacgtg tgtccgcacc gtggtcatca gttgttgagc
     1681 ggtgaaggaa aagcaaaaaa tgtgattacc tgcccgtatc acgcatgggc attcaaactc
     1741 gatggcaatc tggcccatgc acgtaactgc gaaaacgtcg ccaatttcga tagcgacaaa
     1801 gcgcaactgg ttccggtgcg tctggaagaa tatgccggat tcgtcttcat caacatggac
     1861 cccaacgcca ccagcgtaga agatcagtta cccggtctgg gcgcgaaagt gctggaagcc
     1921 tgcccggaag tccacgatct gaaactggcg gcccgcttta ccacccgcac gtctgccaac
     1981 tggaagaaca ttgtcgataa ctatctcgag tgctatcact gtggtccggc gcatccaggt
     2041 ttctccgact ccgtacaggt tgatcgttac tggcacacca tgcacggtaa ctggacgctg
     2101 caatacggtt tcgccaaacc gtccgaacag tcgtttaaat ttgaagaggg tacggatgcg
     2161 gcattccacg gtttctggct gtggccgtgc acgatgctga acgtcacccc gatcaaaggg
     2221 atgatgacgg tcatttatga attcccggtg gattctgaaa ctaccctgca aaactacgat
     2281 atttacttca ccaatgaaga gttaaccgac gagcaaaaat cgctgattga gtggtatcgc
     2341 gatgtgttcc gtccggaaga tttacgtctg gttgaaagcg tacagaaagg gctgaaatcg
     2401 cgtggctatc gtggtcaggg gcgcatcatg gccgacagta gcggtagtgg catttccgaa
     2461 catggtatcg cccatttcca taatctgctg gcgcaggtgt ttaaggacta atgacatcgg
     2521 cggcggtatt ttccgccgct gggctgattt ttgatggagt acagcaatgt cagactatca
     2581 aatgtttgaa gtacaggtga gccaggttga accccttacc gaacaggtga aacgcttcac
     2641 gctggtggca accgatggca aaccgctgcc tgcgttcacc ggaggaagtc acgtcattgt
     2701 gcagatgagc gatggtgata accagtacag caatgcgtat tcactactga gttcgccgca
     2761 tgacacctct tgttatcaga ttgccgttcg gctggaggaa aactcgcgcg gcggttcccg
     2821 ctttttgcat cagcaggtaa aagtgggcaa tcggttaacg atttcaacgc ctaataacct
     2881 gtttgcgcta attccctcag ccagaaagca tctgtttatc gcgggcggta ttggtatcac
     2941 ccctttcctg tcgcacatgg cagagctgca acacagcgac gtcgactggc agctacatta
     3001 ctgctcgcga aatccagaaa gttgcgcatt tcgtgatgag ctagtccagc atccgcaggc
     3061 tgagaaagtt cacttgcatc actcatcaac cggaacacga ctggaattag cgcgattatt
     3121 ggcggatatc gaacctggca cacacgttta tacctgtggt cccgaggcgc taaatgaagc
     3181 ggtaagaagt gaagctgcgc gtctggacat cgccgccgat acgctgcact ttgagcaatt
     3241 tgctatcgaa gacaaaaccg gcgatgcctt taccctggtg cttgcctgtt ccggaaaaga
     3301 gtttgtggtg ccggaagaga tgactatttt gcaggttatt gaaaataata aagccgcgaa
     3361 agtggaatgt ttatgtcgtg aaggggtatg cggaacctgc gaaacagcaa tactggaagg
     3421 tgaagctgac catcgggatc agtattttag cgatgaagag cgtgccagcc agcaaagtat
     3481 gttgatctgt tgttcgcgtg cgaagggtaa acgcctggtg ttggatttgt agtttgccaa
     3541 agccggatgt ggcgctgagc gcgcccagtc cggcttcgga agattttact gcggatattc
     3601 ctgcaataaa ttgtgtaatg cttccgccat cagctcacca cgccagccgg aaatcagctc
     3661 cggcaaattg ttctgcggtt tcagtctcca gtgccagttc agcagttggt tgatttgccg
     3721 acgcgatgcc agcaattcgg cgctgatctt atgcgtttcg ctcacgtcag taatcagcga
     3781 cttaatcgct ttaaacgctt tacgataacc aggcatgtcc atcaggttaa gcatcggctg
     3841 cggtaaggcc tcttccggca atgtctgcac tttttccacc agcgtcagca gcgttttacc
     3901 gtgaaagcgg atttcgctac cggataaacc caggctgtcc agttcgccta aacttcccgg
     3961 catataacgc gcgaccgacc acaaatgctc ttcacgcacg acaaagttca ccgccagatc
     4021 acgctctcgc gccttgcgca gtcgccagtc ggctaacagt tgcagacagg ccagttggcg
     4081 tgtgcgtaac tgccaggcat tggtgatatc acgccaggca tcttccggcg caacgacttc
     4141 ctgacgacgc atttgcatca ggcggcattc atccagcgcc gcaggtagcc agccggaggc
     4201 ctccgtttct accataagct tggcggtgat cggtaacaga taccagacat ccgccgctgc
     4261 gtattcacac tgacgttcgg tcagcggtct ggccagccag tcggtgcgcg attcactctt
     4321 gtccagcgta acgccggaat actcttccac catggaagcg aaaccccatg acatcgggcg
     4381 tccgcagaag gcagaaagga tttgcgtgtc aatcaagggt tgtggtaatt cgccaaagac
     4441 attgaggaac acttccagat cttcactgcc tgcatggaga aattttgtga tggacggatc
     4501 gcgcaggatc gctttcagcg gtgaccagtc ggtgatcccg agaggatcaa ttagcgccag
     4561 atgctcgcca tcgaaaagtt gaatcaaccc cagctgcggg taataagtgc gcgtacgaac
     4621 aaattcagta tccagggcta tcgccggaaa ggcacggacg gcttcacaca aagaagccag
     4681 cgcatcgtcc gtggtaatca tttggtaatt caaattgttt tctctttagt gggcgtcaaa
     4741 aaaaacgccg gattaaccgg cgtctgacga ctgacttaac gctcaggctt tattgtccac
     4801 tttgccgcgc gcttcgtcac gtaattctcg tcgcaaaatt tttccgacgt tagatttcgg
     4861 taactcatca cgaaactcca ccagcttcgg tactttgtat cccgtgagct gacggcggca
     4921 aaaagtcacc agtgactctt cggtaagcga tggatctttt ttcactacga agattttcac
     4981 cgcttcacca ctggagccgg aaggtacgcc aacagccgcg acttcctgta cgccaggatg
     5041 ctgcatgacg acatcttcaa tctcgttggg atagacgtta aaaccggaaa ccagaatcat
     5101 gtctttttta cgatcgacaa tgcgcaggaa tccttcttca tccattaccg cgatgtcgcc
     5161 ggtgtgtaac cagccatttt tgatgatttc atcggtagca tcgggacgct gccagtaacc
     5221 cagcatcacc tgcggtcctt tgacacaaag ctcacccggt tgacctggtg gtacttcatt
     5281 atcatcatca tccaccagtt tggcttccgt cgacggcacc ggcaaaccga tgctaccact
     5341 atgataatca atatcatatg ggttaacgct gaccagcggc gcacactcgg taaggccata
     5401 gccttccagc agatactgtc cggtcagttt cacccaacgc tctgccacca cttgctgcac
     5461 tggcatccca ccgcctgcgg aaagatgcag actggagaaa tccagctgct ggaactcttt
     5521 attgttcagc aacgcattga acaaggtgtt aacgccagtg atagcggtaa acggatattt
     5581 cgctaactct tttaccaacc ctggaatatc acgcgggtta gtgataagca ggttctgccc
     5641 acccagttcg ataaacagca ggcagttaat ggtcagggca aaaatgtgat acagcggcag
     5701 tgccgttact accagttctt tacctggatg cagcaacggc ccataggtgg cgttgacctg
     5761 ttccaggttc gccagcatat tgcggtgagt cagcatcgcg cctttcgcca cacctgtggt
     5821 gccgccggtg tattgcagga aggctaaatc ttccggcacc agttcgggtt tgacgtactg
     5881 catccggtag ccgttatgca gtgcgctacg aaatgaaatg gcatctggca gatggtattt
     5941 cggcaccaaa cgcttgatgt atttaacaac gaaattgact accgtgcctt ttgccgtaga
     6001 tagctgatcg cccatacggg tcagaattac gtgctgaacg gcggttttat caaccacttt
     6061 ttccagtgtg tgagcaaagt tagacacgat aacaatcgcc gatgcgccgc tatcgttaag
     6121 ctgatgctca agctcacgcg gggtatacaa cgggttaacg tttacgacga tcatcccggc
     6181 acgcaaaatg ccaaacagcg ccaccggata ttgcaataaa ttaggcatca tcaacgcaac
     6241 gcgatcgcct ttcttcagcc ccaacccttg ttgcaaataa gcggcaaacg cgcgactgcg
     6301 ttcttccagc ttgcggaagg tcatcacctc ccccatattc acaaacgcag gctgatcggc
     6361 gtagcgcgcg accgactgct caaacatatc taccagagat tgataacggt cagggttgat
     6421 ctccgtcgga acgtccgcgg gataacggtt aagccaaacc ttcttcaatt cttcacctct
     6481 aaaatgcgtg ttcgtcgtca tcgcaacccc aaatgatata catgccgtta acataatatt
     6541 aactcatcat accagcttga taattaccca acgaaaaggt tgcgaagctc gtcactattt
     6601 atttttatct ttaccgtaag aatgcagaaa cagcggacca gccgctgttt ctttttcttt
     6661 aaaaacaagc aattattcag ttacaactgt ttgtactctc gcgggaccgg gattatacca
     6721 gccccatccg ccgtagtcat agggccagcc acgaccgcca taaaaccatg gatcaatcgg
     6781 ctgaggcggc ataatcacct gctgggttaa atgccaacgt ttgtaacccg ttacttgcat
     6841 caccataaat ttatagggcg tattgccgat tttgccgtca accgcaccag tgattggccc
     6901 gactaccgta accagttgtc cacggaaatc caccgggtcc agaaaaccgt tcacatcggc
     6961 ataaatgcga ccgcgagaag gttctcccag cgtcggtctg gctccgctgt ccagcggtac
     7021 ggtagcaatt tccaggcggg ttttcccttg ctggttttgt accgcaacca ctttgccacc
     7081 aaagcgtgcc tcctgaccaa cgtacagctg cggcgcactc atcacccgaa ctaaatcttg
     7141 ttgcggcgtg ggactgctgc ctttaatggc gtccggcaca gtgacacaac cgctcagcat
     7201 tagcgcaaac gtacctgcca gtatgccttt gataacattc ttttgaaccg ccatgatgcg
     7261 actccttttt tctcagggca tactcttaag attcattctt tgcccggaag tttcttccat
     7321 gcgacgttgt tacgtaaata aaccggttcg gcatgttcca ccgccaccgt tttaccctcg
     7381 gcaaatatct gacacgcaat cggcagcata tcttccgtcg ctggcagtaa aacttctccg
     7441 tcgcgcaaaa ccagcccgct ctctttaccg agatccggcc aggcttgcca gcccgtccct
     7501 accgttaccc attcgccgga aagctgttgc attcgttcat gaacgagttc gggtttgagt
     7561 acggcttcgg tttcttcacc gcgccagata ccgttttcat cacgctgata ttcggcccag
     7621 taaacttcgc ccatccgcgc atcaatggca gccagcacgc gggttgcgcc gtttttgcgc
     7681 cacgcccctt gcgccattgt cattagcgtg gagacgccaa tcatcggcag ctctgcgcca
     7741 agtgccagcc cttgcgcaat gccaatacca atgcgcacgc cggtaaagct accggggccg
     7801 cgcccgtaag ccagagcgtt aatatcagtc agggaagttc cgctggtggt caggatatcc
     7861 tgcaccatcg gtaagattcg ttgagtatgt tcacgagggc aaagctcaaa atgagcgttg
     7921 acagtaccgt cgttccacag ggcgacagag caggcctctg tcgcggtatc gatagccaga
     7981 attcgcatgg gtcttcgtgc ttagatcaat aaaaaggcgc gcatcatacc atactccgta
     8041 acaaattacc tggaggatgg tatcgcaagg aaacgaaccg cacgggcaat gtcacgggtg
     8101 cgcggcgcgg gcggcagact ggcgagaaac gtcgcgccgt aagggcgcat caccagccga
     8161 ttgtcacaaa tcaccaaaac cccgcgatcg tcggcgtcgc gaatcagtcg ccctaccccc
     8221 tgcttgagag taatcaccgc atccggcagt tgtacttcat cgaacgggtc gccaccgcgc
     8281 aaacggcaat cttccatgcg cgcttttaac agcgggtcat ccggtgaggt aaacggcaac
     8341 ttgtcgataa tcaccaatga caatgtatcg ccacgcacgt ccaccccttc ccagaaacta
     8401 ctggttgcca caagaagcgc gttaccggcg ctgacaaatt gctgcaacag ttgccctttg
     8461 ctggtttccc cctgcaacaa aacgggaagc gtcatggtag cgcggaactg ctcggccaga
     8521 tcacgcatca tggcgtgcga ggtacaaagc ataaaacaac gaccgttgtt agcttcgatg
     8581 atcggtcgca gcattgccgc taactggcga gcagaacctg gctggttggt ttgcggcaga
     8641 ttgcgcggca cacagagtaa cgcctggcgg ctgtaatcaa acgagcttgg caatagcaac
     8701 gactccgcct gttctatccc aagccgcgag gtgaaatgat gcagatcgtc gttcaccgac
     8761 agcgttgctg aggtgaagat ccagctacca ggcttttgcg ccattaactc tttgaattta
     8821 tccgccacgc tgagcggcgt gagagccaga gtaaaatggc gcgaagtgca ttcgtaccag
     8881 tagctgtagc ccggctgatt gatctctttt agccgcttca gccgtgtgcg atacaacgta
     8941 gcgcgctcaa atgccgcatc cagcaaggcg gaacgcccca gtgacagttt cgccacgtca
     9001 taacaaagtt ccagggtgtc atcgagcagt aaaaatgccc gctgaatttg cggattagct
     9061 aacagctcac gcaggttacc tcgataacct ggctcaccga gttgcagacg aaaatcctgc
     9121 gcactctggg caagacgatc agcgcacttt tgtaactgct gggtgtcttt taattcggtg
     9181 cggtaggcga tggtgatgtc ttttgccagg tcgagcagtt gtcgactgga gagtgactga
     9241 ccaaaatact ggctggcaat gtccggtagc tggtgggctt cgtcgaagat catgacgtcc
     9301 gcttccggga tcagttcgcc aaatccactc tctttaacca ccatatccgc cagaaagaga
     9361 tgatggttta ccaccaccac atcggcgtcc atcgcttttt tacgtgcttt gaccacaaag
     9421 caatctttat acatcgggca gtcgctgcca agacagttgt cgttggtgct ggtaaccagc
     9481 ggccacgcct gtgaatcttc cgccacgctg acgcaggtgc tgatatcacc atcgactgtt
     9541 tgattagacc aggagcgcag caggatcaca tcgcttaaga tttgtaccgg cagatcgccc
     9601 cccgccagcg cctgctgttc gagacgttcg aggcagaggt agtttgagcg ccctttcagc
     9661 agcgccacgt tgcccgtata tttcaatgcc tttgagactg ttggcaaatc gcggctgtag
     9721 agctgatcct gcaacgcttt tgagccggtc gagataatga ctttcttttt cgcccgcagc
     9781 gcaggagcca ggtaagcgta ggttttgccc gtaccggttc ctgcttccac caccagcggc
     9841 tggccttttt ctatcgcctg ggtgacggct accgccatct gtcgctgtgg ttctcgcggc
     9901 ttaaagcctg gtatcgcttt cgccagctga ccgtctggtg caaaatcgtc cgtcacacta
     9961 ccccctgttg atttgaacag ggattatgtc aggatgaggg cgctttcgcc agttgaagtg
    10021 gtgacggcaa cctcacattg tggcagtctt tgcagcacga aaatggaagt ataatgagga
    10081 caaaatgatg actatcgttc gtatcgatgc tgaagcccgc tggtctgatg tagtaatcca
    10141 caacaacacg ctctactaca ctggtgtacc ggaaaacctc gacgccgatg cttttgagca
    10201 aaccgccaac acgctggcgc agattgacgc cgtgctggaa aaacagggca gcaataaatc
    10261 gagcattctg gatgccacca ttttcctggc tgataaaaac gacttcgcgg cgatgaataa
    10321 agcgtgggat gcctgggttg tggcgggtca tgcgccggtg cgctgcacgg tgcaagcggg
    10381 gctgatgaac ccgaagtata aagttgaaat taagattgtg gctgcggtgt aagctttatc
    10441 gaagcaaaat aagtcagacg ataatttatc gataatactg gtcggtttta cataaatcga
    10501 ccagagatta agatattact gttgatgctc ctgctaattc attatttatt tttataattt
    10561 caattttagc tataaagcta actatataaa taaacataac catgccgttg tgttcgccct
    10621 tcgattagca cctctggttt tctttcttag ctgaacaatc tggttatagc gtgcggactg
    10681 accgttaatt ttctccatct tactggataa c
//
LOCUS       DAJVUN010000133        10527 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.133, whole genome shotgun sequence.
ACCESSION   DAJVUN010000133 DAJVUN010000000
VERSION     DAJVUN010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10527
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.133"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1298
                     /locus_tag="OQQ76_002968"
     CDS             <1..1298
                     /locus_tag="OQQ76_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HCS1969384.1"
                     /translation="WLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPC
                     VRILTQDEIDVRIKRFWRYLDRTLPGAFMHANIGPPDSPITRAILRADAELKQVSPNL
                     TFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGG
                     GSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLV
                     KEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAVNEVGYRISAQLAEFVA
                     NTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGI
                     SDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYR
                     AEGSRTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ"
     gene            1270..2133
                     /locus_tag="OQQ76_002969"
     CDS             1270..2133
                     /locus_tag="OQQ76_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjW family glycine radical enzyme activase"
                     /protein_id="HCS1969385.1"
                     /translation="MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM
                     GRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQYDTCLKMCPQHATPMAQSMSVDEV
                     LSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETG
                     WEKLLPVCDGTMLDLKAWGSECHQHLTGRDNQQIKRSICLLAERGKLAELRLLVIPDQ
                     VDYLHHIDELATFIKRLGDVPVRLNAFHTHGVYGEAQSWASDTPEDVEPLADALKVRG
                     VSRLIFPALYL"
     gene            complement(2347..3129)
                     /locus_tag="OQQ76_002970"
     CDS             complement(2347..3129)
                     /locus_tag="OQQ76_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313363.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1969386.1"
                     /translation="MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAE
                     NFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEVGLDL
                     FGDDPQLERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLSRTGVVHGFS
                     GSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQG
                     QPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG"
     gene            complement(3126..4199)
                     /locus_tag="OQQ76_002971"
     CDS             complement(3126..4199)
                     /locus_tag="OQQ76_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HCS1969387.1"
                     /translation="MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLD
                     EFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGN
                     LIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVI
                     RASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQ
                     WFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIAL
                     GSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVAND
                     TLVAEVIDAPQANDPTFNNEDLA"
     gene            complement(4321..4482)
                     /locus_tag="OQQ76_002972"
     CDS             complement(4321..4482)
                     /locus_tag="OQQ76_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HCS1969388.1"
                     /translation="MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLV
                     SLFMGRKRP"
     gene            complement(4609..5214)
                     /gene="osmY"
                     /locus_tag="OQQ76_002973"
     CDS             complement(4609..5214)
                     /gene="osmY"
                     /locus_tag="OQQ76_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone OsmY"
                     /protein_id="HCS1969389.1"
                     /translation="MTMTRLKISKTLRAVMLTSAVATGSAYAENNAQTTNESAGQKVD
                     SSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTEQKVVTLSGFVESQAQAEEA
                     VKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVE
                     TTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK"
     gene            complement(5607..7193)
                     /gene="prfC"
                     /locus_tag="OQQ76_002974"
     CDS             complement(5607..7193)
                     /gene="prfC"
                     /locus_tag="OQQ76_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000202568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HCS1969390.1"
                     /translation="MTSLLAAEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGT
                     VKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTL
                     TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENE
                     LKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAV
                     GEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAP
                     APMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVR
                     TAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNF
                     APELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVS
                     RLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMV
                     NLRLAQERYPDVQFHQTREH"
     gene            7413..7673
                     /locus_tag="OQQ76_002975"
     CDS             7413..7673
                     /locus_tag="OQQ76_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001217544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1969391.1"
                     /translation="MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTTDKDLAKTFVQETLKDTWESADEWFVYSHHK"
     gene            8033..9637
                     /locus_tag="OQQ76_002976"
     CDS             8033..9637
                     /locus_tag="OQQ76_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005025120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HCS1969392.1"
                     /translation="MHNFALANKKSPDFISELPQIEPKPYSNGHKIKWINHTLTSTEV
                     TPPDNLIKICILIESGEIAITSVSDIANLLGVPAGQLLYILYRKKDNYRTFEIEKKNG
                     KKRVINAPCGGLSILQTRLKPVLEYFYRPKKSAHGFIKGKSIITNAGMHIKKNFVVNI
                     DLENYFESISFARVYGIFKSKPFNFAHPAATVLAQLCTHNGKLPQGACTSPILANIAS
                     ASLDKQLTQFAGRKKISYSRYADDITFSFNQRNIDIIKKNDDGSYSLSETIDNIISKN
                     GFKINYDKFRVQTRNTRQSVTGLVVNDKVNINRRYIRITRSMIHRWTDDKLKYALLFA
                     TEKGYQAKDNNHAIQIFRNHIYGRLSFIKMVRGKDYPGYLKLMSYMSHNDPLKTQEGL
                     RAMKETENFDVFICHASEDKKDIAIPIYDELTKLKISAFIDHVEIKWGDSLIDKINAA
                     LVKSKYVIAILSANSVNKEWPQKELRAVLASEISSGDVKLLTLLKKEDEEVVNLSLPL
                     LSDKFYMVYDNNPEVVANNIKSLLQR"
     gene            complement(9823..10026)
                     /locus_tag="OQQ76_002977"
                     /pseudo
     CDS             complement(9823..10026)
                     /locus_tag="OQQ76_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002431636.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            complement(10084..10506)
                     /locus_tag="OQQ76_002978"
     CDS             complement(10084..10506)
                     /locus_tag="OQQ76_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1969393.1"
                     /translation="MAVFNSDDASWYLVEDHRGKTVYDVASGDALFISELGPLPENVT
                     WLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEETKNSLMQVASEHIAPLQDAADLKIA
                     TEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPTVPVME"
BASE COUNT         2827 a         2580 c         2450 g         2670 t
ORIGIN      
        1 aatggctgga gctggaaggc gcgaaagatc ttgatgacgc actctctctg ctgaccattc
       61 tttaccacca cgtaccgtcg gtcacatcga tgccggtcta cctggggcaa ctggatgcgt
      121 tgttgcaacc gtgtgttaga attctaacac aagacgagat cgatgttcga ataaaacgtt
      181 tctggcgtta cctcgacaga accctgccag gcgcctttat gcacgccaat atcggcccgc
      241 ctgattcgcc cattacccgc gcgatcttac gtgcagacgc agagttgaag caggtttcac
      301 cgaacctgac ctttatctac gatcctgaaa tcacccctga tgacctgctg ctggaagtgg
      361 cgaagaacat ctgtgaatgt agcaaaccgc acatcgccaa cggtccggtg catgataaaa
      421 ttttcacaaa agggggctac gggattgtga gctgttacaa ctcactgccg ctggcgggtg
      481 gtggcagcac gctggtacgc cttaacctga aagccattgc cgagcgcagc gaatcgctgg
      541 atgacttctt tacgcgcact ctaccgcact actgccagca gcagatcgcc atcatcgatg
      601 cgcggtgtga attcctctat caacaatcac acttctttga gaatagcttc ctggtgaaag
      661 aagggctgat taaccctgaa cgttttgtgc caatgtttgg catgtatggg ctggcggaag
      721 cggttaactt gctgtgtgag aaagaaggga ttgccgcgcg ctacggtaaa gaagccgccg
      781 taaatgaagt gggttatcgc atcagcgcgc aactggcgga gtttgtcgcc aatacccccg
      841 tgaaatatgg ctggcaaaaa cgcgccatgt tacacgcaca gtcggggatc agttccgata
      901 tcggcaccac gccgggcgcg cgtttgccgt atggcgatga gccagatccg atcatccatc
      961 tgcaaactgt cgccccgcat catgcttatt attattccgg catcagcgac attctgacgc
     1021 tcgacgaaac catcaaacgt aatccgcagg cgctggtaca gctttgcctc ggtgccttta
     1081 aagccggaat gcgtgaattt accgccaatg tcagcggtaa cgatctggtt cgcgttaccg
     1141 gttatatggt gcgtttgtcg gatttagaaa aatatcgcgc cgaaggttca cgcaccaaca
     1201 ccacctggct gggcgaagaa gccacacgca acactcgtat tctggaacgc cagccgcgcg
     1261 tgataagcca tgaacagcag atgcgcttta gtcagtaaga ttatcccctt ctcctgcgtt
     1321 gacgggccag gcagtcgtct ggctctgttt ctgcagggct gcaatctgcg ctgcaaaaac
     1381 tgtcacaatc cgtggacgat gggacgctgc aatgattgcg gagagtgcgt gccacagtgt
     1441 ccgcatcagg cgttgcagat tgttgacggc aaagtgctgt ggaacgctgt ggtctgcgag
     1501 cagtatgata cctgcctgaa gatgtgtccg caacatgcca cgccaatggc gcaatccatg
     1561 agcgtggacg aagtgcttag ccatgtccgc aaagcggtgc tgtttattga agggataacg
     1621 gtaagcggcg gcgaagccac gacccaactg ccgtttgtag tggcgctgtt tactgctatc
     1681 aaaaacgatc cgcaactgcg ccacctcacc tgcctggtgg acagtaacgg catgttgagc
     1741 gaaaccggct gggaaaaatt actcccggtg tgtgacggca caatgctcga tctcaaagcg
     1801 tgggggagcg aatgtcatca acacttaacc ggacgcgata atcagcagat taagcgcagc
     1861 atctgtttgc ttgcagagcg cggcaagctg gcggaactgc gtttgctggt aattccagac
     1921 caggtggatt atttgcatca catcgatgag ctggcgacgt ttatcaagag acttggcgat
     1981 gttccggttc gcctgaatgc gtttcatacc cacggcgtgt atggcgaggc gcaaagctgg
     2041 gcgagcgaca cgccggaaga cgttgagccg ttggctgatg cgttaaaggt gcgcggggtg
     2101 agccggttga tatttccggc gctctatttg tgacatgcca gatacggcct acggttcggc
     2161 acagacttgt aggcatgata agacgcgaca agcgtcgcat caggcattgt gcgccaactg
     2221 ccggatgcgg cgtgaacgcc ttatccggcc tacggttcgg cacaaacctg taggcatgat
     2281 aagacgcgac aagagtcgca tcaggcatta tgcgccgact gccggatgct gcctacgaag
     2341 ggtaaactac ccactaacgc taaacaacgc atacgtatta ttaagcaaca cttcggcaat
     2401 ctcatcttct ggttccgggc gcaactcgca aagcacgtca aacacccgca cagcctgttc
     2461 cggtcggtta ggctgcccct gaaagccgtt gagcggcata tccggcgcgt cggtttccag
     2521 caacaacgat gccagcggta attttgcgat gacatcgcgg gttttactgg cgcgtggata
     2581 ggtgatagta ccgcctacgc cgattttgta gcccagctgt acaaaccgct cggcctgttg
     2641 caggctgccg gaaaaaccgt gaaccacgcc agtgcgcgat aaatcgtggc gtttaagatg
     2701 catcgccagt ttgtcgtgtg tgcgccgtga atgcaggatc accggcagat cgtagcgttt
     2761 cgccagtttc agctgttcgt cgagtaacca ctgctgcctc tcaagttgcg gatcgtcgcc
     2821 gaagagatcc agaccgacct cccccactgc caccaccttc gccggacgcc tttccagcgc
     2881 ctgctgtagc tgctcaagag acacatcgct atgtttttcc aacatacctg gatgcaagcc
     2941 caatgcggca tacagcggtt gatatttttc cgctaacgcc tgcacacggg caaaattttc
     3001 cgcctctgtc gccggaacaa tgatcttgcc tacgcccgct tgtgccgcgc gttgcaggct
     3061 ggcctcttca tcgccactaa acggcgggaa atcaaaatgg cagtgggtgt cgataaaacg
     3121 gcaaatcaag ccagatcctc attgttaaat gtcgggtcgt tcgcctgcgg agcgtcaatc
     3181 acttcggcaa ccagcgtatc gttggcgact ggcgcaggcg gaataacgat cgattccggc
     3241 gtcaccactg gcaccagatg gcgggtaagc ggcgcttttt cagttaatag cttgccaacc
     3301 gtggcgagga aataacgacc gcataaacgc ccaagtttat agtcttcacg cagcgccgga
     3361 atccgactgc caagcgcgat actatgtaat ggcttcggcg gataaatttc gaatatccgc
     3421 agcttgcccg gtggtttctc aataaattgc tgaatgtcac gatagctggt ttcatgatgc
     3481 tgcaccagat tgaccagcgg ctgcaggcta ctgtcaccca gccagcgttc catgcgtttg
     3541 aaccactgcg gcgtgtagta catttgtgac ggcacagtgc gaatgacgac caacgtttta
     3601 gcgccctgcc ttgccgcctc tttaaccgga atcgcatcac tgatcccgcc atccaggtag
     3661 ttaatgcctt ccagcgacac tccgctacga taaaagccag gtatcgcact ggaggcgcga
     3721 atcacatcca gccagttttg tttggttggt aaaaagtaat taggcgcgta gtcatcctga
     3781 cgacaggcgc acatataaaa cgatttgccg ctgtcaaaca accgcgcggc ggtatccatt
     3841 tgcaacggca tctggcttgc ggtggcctcc accagccagt cgagatcgat aagatttcct
     3901 ccacggacaa agcgcaatgg atcgaaaaat tcgcgttttg tggtatagcg catgatgact
     3961 ttgcgcgcgt aaccgggctg attgcagata aacgccgaga ggttctgcgc cccggcagat
     4021 gtgccgagat aaagatcgaa aggattaaac tgcgcgcgca taaactcatc cagcacgcca
     4081 gccgtgaaaa ttccacgctg tccgccgcct tcgcacacca gagctattcg tccaggctgg
     4141 aacggcctta gcgacaacgg cgcaatatta ccaagcgtta caggtattcg ctgccccacc
     4201 tctgccttcc tgtttttgtt gtgaaagaat gacaaagtaa cgcaatttat tattcgctaa
     4261 aaccgcaaaa gccagtccgc tggactggct ttggataaaa ttttcttaat ggcctgaaat
     4321 ctagggtcgt tttcggccca tgaacaaact caccaggaac agaataatcc cgacgacaaa
     4381 gacaatttta gctgcgcctg cagcggtacc ggccaaacca ccaaacccaa gtgcggcggc
     4441 gattaacgcg ataaccagaa atatgatgcc ccaacgaaac ataagcgtct cctttaccat
     4501 agttaatgtc accgcttgat atgagcgtga aaatcactca atgcgatatt tttagtgtgg
     4561 tgcacatcgc gcctcccgac aaagttcggg aggacgaatt acgacgaatt acttagtttt
     4621 cagatcattt ttaacgcttt tcacaccatc taccgctttg gcgatacttt cagcacggtc
     4681 actttgtgcc tgagaatcta cggtaccgga gagctgaacc acgccgtcgg tggtttcaac
     4741 tttcacatga cgggaaggga cgatatcgtc cgccagcagt ttggctttga tttcactggt
     4801 ggtggcggtg tcacccgcgt agcccttcac cgagccttct ttagcgtcgc gaacgtgcag
     4861 tttgtcgctg acagaggtca ccccttcaac gcctttcgcc actttcactg cctcttcggc
     4921 ctgagcctgg ctttcaacga aaccgctcag ggtcacgact ttttgctcgg ttttgacaga
     4981 gatatcggtg ctcttgatgt tgtcatgatc caccagcgcc gccttcactt tcgcggtgat
     5041 ggcgctgtca tccatgaaat taccgacttt attcatagag ctatcgactt tttgccctgc
     5101 gctttcattg gtagtctgtg cgttgttttc cgcgtaggca gagccggtcg cgacggcaga
     5161 ggtcaacatt acagcccgca gagttttcga aatcttcagt cttgtcatag tcatcgattt
     5221 attcctgtat gtttgctcgt aatttgagcc tagcaacacg aggttgcatt gctgaatagg
     5281 gagagacttc accctctaca gaagtcaatg gtcgccatca caaaagcgat gggtgatgaa
     5341 taacgaccat tacagcctct gaatcagtta ttaatatcgg tagaatgaca atcgacggct
     5401 ttagatactg atatctacgc attgaacggt atttaacgcc gtcagaaatg tcattacttt
     5461 gttaaatata gatcacaatt ttgaaaccgc tcgtaatatc agcgaaaaca taagcaaaag
     5521 tgaatgtttt aagaacattc cgtaagcggc taataaggaa gggaaattga cagggcgcag
     5581 cggctaccgc gccctggagg caagaattaa tgctcgcggg tctggtggaa ctgaacgtcg
     5641 ggataacgtt cctgcgccag gcgcaggttg accatgctgg tagcgatgta agcgaggtta
     5701 tcgccgccat caagcgccag ttggctttcg ttcttacgct tgaactcttc gaatttcttc
     5761 gcgtccgcac attctaccca gcgggcagtg gcaacgttga ctgattcata tactgcttca
     5821 acgttgtatt cgctcttcag gcgcgatacc accacatcaa actgcagcac accaacagca
     5881 ccaacgatca aatcgttgtt ggagatcgga cggaacacct gcaccgcgcc ctcttcggaa
     5941 agctgtacca gccctttgag cagctgtttt tgcttcagcg gatctttcag gcggatacga
     6001 cggaacagtt ctggtgcgaa gttcggaata ccggtgaact tcatcatctc cccctgggta
     6061 aaggtgtcgc cgatctgaat agtgccgtgg ttgtgcaggc cgaggatatc acccggatac
     6121 gcttcttcaa cgtgcgaacg gtcgcccgcc ataaaggtca gcgcgtcgga gataaccaca
     6181 tctttcgcag tacgcacctg gcgcagcttc atgccttttt catatttacc ggatactacg
     6241 cgcataaacg ccacgcggtc gcgatgtttc gggtccatat tggcctgaat tttaaatacg
     6301 aagccggtaa atttgtcttc gctcgcctct acggtacggg tatcagtctg acgcggcatc
     6361 ggcgcagggg cccactccac caggccatcc agcatatgat caacgccgaa gttacccagc
     6421 gcagtaccga agaataccgg agtgatttcg cccgcaagga acagttcttt gtcgaactcg
     6481 ttagacgcgc ctttcaccag ttccagttcg tcacgtagct gctgtgccag atcttcacca
     6541 accgcagcgt cgagatccgg gttattcagc cctttaacaa tacggacttc ctgaatcgtg
     6601 tggcctttac cgctctgata aagataggtt tcgtctttat aaaggtggta aacgccttta
     6661 aacagcttgc cgcagccaat cggccaggtg atcggtgcgc agccgatttt cagctcgttc
     6721 tcaacttcat cgagcagttc catcgggtcg cggatatcac ggtcaagttt gttcataaag
     6781 gtgaggatcg gcgtgtcgcg cagacgggta acttccatca gcttacgggt acgatcttca
     6841 acaccttttg cagcgtcgat aaccatcagg cagcagtcca ccgctgtcag ggtacgatag
     6901 gtatcttccg agaagtcttc gtgccccggg gtgtctagca ggttaaccag gcaatcgtga
     6961 tacggaaact gcatcacaga cgtagtaatg gagatcccac gctgcttttc catctccatc
     7021 cagtccgact tagcgtgctg gttggaacca cggcctttta ctgtaccagc ggtctgaatg
     7081 gcctgtccga acagcagcac cttctcggtg atggtagttt taccggcgtc cgggtgagaa
     7141 ataattgcaa aggttcttct tttcgctacc tctgcggcca aaaggcttgt cataattgtt
     7201 gtctctttga ttatgtacaa tcatatgtac aaagaaaaat tcatgccgct gattgtacat
     7261 tttggaggta tcagagcata gcagaacatg atcagtaggt gtatttgtag ccaaagaaca
     7321 tttgtacatg cagcaatctt tgctctattg acactgttta tttatacagt taaaaataat
     7381 gctgtatgca aacacagtgt agagggagtt ttatgcgtat tgagatctgc atagccaaag
     7441 agaaaatgac taaaatgcca aacggtgctg tggatgcgtt aaaggaagaa ttaacccgac
     7501 gcatcagtaa gcgttatgac gatgtagagg tgatcgtaaa agccaccagc aatgatggcc
     7561 tttctgttac gcgcaccact gataaagatt tagctaaaac ttttgttcag gaaactctga
     7621 aagatacctg ggagtctgct gacgagtggt ttgtatactc ccaccataaa tgaagttaat
     7681 gactattgtg agcgagaaac gcgctactac tatatataga cagacaagat gcacttactg
     7741 aataaatact cataacggag aaaccagctg tatagtgaac aatagatttc cagtagcata
     7801 tttttacttc acttttagtt attaatatga taatcataaa ctacggctct gccttaaatt
     7861 tgtgaggttg tttcgcctcg aaggaactaa tgttaggaca tacgccaccg ttcagtcgat
     7921 ggtaacgctt cttaactagt ggtccgctaa gtgatgcgca aagtgattgg gcagagccga
     7981 aacgtttaca atccgatagg agttggtttt gtcgctacat gataaattat taatgcataa
     8041 cttcgcatta gccaataaaa aaagccctga cttcatatct gaacttcctc aaattgaacc
     8101 taaaccatac agcaatggac ataaaattaa atggataaac cacacactta ctagcactga
     8161 agttactccc cctgataacc tgattaaaat atgcatattg attgagtcag gggaaattgc
     8221 tataacatca gtaagtgata ttgccaattt acttggagtt cctgctggcc aattacttta
     8281 tatactatat cgtaaaaaag ataattatcg tacttttgaa atagaaaaga agaatggtaa
     8341 aaaaagagtc attaatgctc cttgtggcgg tctatcgata ctccaaacga gactaaagcc
     8401 cgttcttgaa tatttctaca ggccaaagaa atctgctcat ggttttataa aaggaaagag
     8461 catcattact aatgctggga tgcatattaa aaaaaatttt gtcgtaaaca ttgatctaga
     8521 aaactatttc gaatcaataa gttttgctag ggtttatgga atatttaaaa gtaaaccttt
     8581 taattttgct catcctgcag ctactgtttt agctcagtta tgtactcaca atggaaaatt
     8641 acctcaaggt gcgtgtacat cgccaatatt agcaaatatt gcatcagctt ctctagacaa
     8701 acagctcacc caatttgcag gaagaaaaaa aatatcttat tctaggtatg ctgacgacat
     8761 aactttttct ttcaatcaga gaaatattga tataatcaaa aaaaacgacg acggaagtta
     8821 tagtcttagt gaaactatag acaatattat ttcaaaaaat ggctttaaaa taaattatga
     8881 taaatttaga gttcaaacca gaaatacaag acaaagtgtt actggcttag tggttaatga
     8941 taaagttaac attaacagaa gatatataag aattacacgt tcaatgattc atagatggac
     9001 agatgataag ctaaagtatg cacttctctt tgctacagaa aaaggatatc aggcaaagga
     9061 taataaccac gcaattcaaa ttttccgaaa tcatatttat ggaaggctta gctttataaa
     9121 aatggttaga gggaaagact atccaggata tttaaaactg atgtcataca tgagtcataa
     9181 cgatccatta aaaacccaag aaggattgcg agcaatgaaa gaaacagaaa actttgatgt
     9241 ttttatatgc catgcaagcg aagacaaaaa agacattgca attccaatat atgacgagtt
     9301 aactaaactt aaaatttcag ccttcataga tcatgttgag ataaaatggg gcgactcctt
     9361 aattgataaa ataaatgcag cactagttaa atcaaaatat gtcatcgcta ttttatctgc
     9421 taattcagtc aataaggaat ggcctcaaaa agaattaaga gcagttttag ccagcgaaat
     9481 atcgagtggc gacgtaaaac ttttgacctt attaaaaaaa gaagacgagg aggtcgtaaa
     9541 cctatcatta cctttactta gtgataagtt ttatatggtc tatgataata atcctgaagt
     9601 agtcgccaac aatattaaat cactcttaca acgataattc tctcacaaaa gcaaatgtgc
     9661 agattgatgc gtattaagta ttaatctgca catacaaaaa aaaataataa aataatacat
     9721 ttttcataac ttgtaggtaa caacaatata tgtcgtaacg aatatttgga taacctctat
     9781 accctattaa ccaaccaatt aactctatgt aatctcgcag cctcaaaacc cgactattgt
     9841 tctcttaaca gtcagttcac gttccattcc ggcctgagcc ccataacatg gaagaaaaaa
     9901 cgcccccagt cagtccagct ttcagacaat cagtgtgtca cctgccgata atattctgag
     9961 tagttttttc agcccaagcc tttcggactt tgtaccactg attttatctt caaaatcagc
    10021 gcgcattctt cgtaatccag caaactcttg tatatgacgt tattatggct acagcagtaa
    10081 cgattattcc ataacaggta ctgtaggcca ctcaatatcc ggtgcagttg atgtgtcaac
    10141 acggttcagc aacacccgat actttttcca ggcttccagc aacgagtttt cttcctccgt
    10201 tgcgattttc agatctgcag catcctgaag cggcgcaata tgctcactgg ctacctgcat
    10261 caggctgttt tttgtttctt ccgcctcccg gatccggaac agtttttctg cttccgtatc
    10321 cttcacccag gctgtgccgt tccacttctg aaactcccct tccggagata accaggtgac
    10381 attttccggt aacggaccga gttcagaaat aaataacgcg tcccctgatg ccacgtcata
    10441 aactgtttta ccccgatggt cttcaacaag ataccacgat gcatcatcac tgttgaaaac
    10501 agccacgaag ccagccggaa tatctgg
//
LOCUS       DAJVUN010000134        10469 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.134, whole genome shotgun sequence.
ACCESSION   DAJVUN010000134 DAJVUN010000000
VERSION     DAJVUN010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10469
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.134"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(31..1929)
                     /gene="espL1"
                     /locus_tag="OQQ76_002979"
     CDS             complement(31..1929)
                     /gene="espL1"
                     /locus_tag="OQQ76_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector EspL1"
                     /protein_id="HCS1969394.1"
                     /translation="MSQNDIIIRTHYKSPHRLHIDSDIPTPSSELINQFARQLITLLD
                     TSDLSSMLSYCITQEFTANCRKISQNCYSTALFIINFATSPIHAENILITLHYKKEII
                     PLFLETTPIKANHLRSILDYIEQEQLTAEDRNHCMKLSKKSHREKTIQPTVNLNGSAC
                     FLQSPSDAIFCRHLSLQYALDSLRNGKGKVNLIKHYSSVESIQQHVPLVRDAEFRALL
                     RHPPAGSRVIASKDFGFALDIFFCRMMANNVSHMSAILYIDNHTLSVRLRIKQLVYGQ
                     LNYVVSVYDPNDTNVAVRGTHRTARGFLSLDKFISSGPDAQSWADRYVRNCAIAILPL
                     LPVGVPGAIFAGIASRMPFAPIHPSAMLLIMATGQTQQLITLFKQLPILPEKEIIEII
                     TAQNSVGTPALFLAMMNGHTDNVKIFMQEIQSLIYNHIIHEDNLVKLLQTKSANETPG
                     LYISMLYGFDETIDIFLNALTTPIAQELLNKKIVMDILAMKTRDGELGLFAAMENNHP
                     LCVTRFLSKINGIAFKYKLSKANIMDLLKGATAHGTPVLYIAMSKGNEDVVLSYISTL
                     NIFAKKYSFSQRQLFTLLAAKNHDNMSAVHIAIHHNHYKTVETYYAAINVISQSLSFS
                     ADELKTYL"
     gene            2451..4379
                     /gene="thrS"
                     /locus_tag="OQQ76_002980"
     CDS             2451..4379
                     /gene="thrS"
                     /locus_tag="OQQ76_002980"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006894721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HCS1969395.1"
                     /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL
                     VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF
                     YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHAARETFANRGESYKVSIL
                     DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI
                     YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE
                     LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC
                     PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI
                     PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV
                     MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG
                     IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV
                     IEKLQQEIRSRSLKQLEE"
     gene            4383..4925
                     /gene="infC"
                     /locus_tag="OQQ76_002981"
     CDS             4383..4925
                     /gene="infC"
                     /locus_tag="OQQ76_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HCS1969396.1"
                     /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALE
                     KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGT
                     DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES
                     FPTKIEGRQMIMVLAPKKKQ"
     gene            5022..5219
                     /gene="rpmI"
                     /locus_tag="OQQ76_002982"
     CDS             5022..5219
                     /gene="rpmI"
                     /locus_tag="OQQ76_002982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HCS1969397.1"
                     /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL
                     RPKAMVSKGDLGLVIACLPYA"
     gene            5272..5628
                     /gene="rplT"
                     /locus_tag="OQQ76_002983"
     CDS             5272..5628
                     /gene="rplT"
                     /locus_tag="OQQ76_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HCS1969398.1"
                     /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFTALVEKAKAALA"
     misc_feature    5745..5869
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            5751..5795
                     /gene="pheM"
                     /locus_tag="OQQ76_002984"
     CDS             5751..5795
                     /gene="pheM"
                     /locus_tag="OQQ76_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheST operon leader peptide PheM"
                     /protein_id="HCS1969399.1"
                     /translation="MNAAIFRFFFYFST"
     gene            6078..7061
                     /gene="pheS"
                     /locus_tag="OQQ76_002985"
     CDS             6078..7061
                     /gene="pheS"
                     /locus_tag="OQQ76_002985"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004851795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HCS1969400.1"
                     /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT
                     LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE
                     NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF
                     DTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI
                     SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH
                     PNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRLFFENDLRFLKQFK"
     gene            7076..9463
                     /gene="pheT"
                     /locus_tag="OQQ76_002986"
     CDS             7076..9463
                     /gene="pheT"
                     /locus_tag="OQQ76_002986"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HCS1969401.1"
                     /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHG
                     VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD
                     FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEI
                     SVTPNRADCLGIIGVARDVAVLNQLPLVEPEIVPVGATIDDTLPITVEAPEACPRYLG
                     RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI
                     VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE
                     CAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVI
                     DITNEATLPKRATITLRRSKLDCLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS
                     WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ
                     EVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNR
                     VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV
                     LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF
                     ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL
                     FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD"
     gene            9468..9767
                     /gene="ihfA"
                     /locus_tag="OQQ76_002987"
     CDS             9468..9767
                     /gene="ihfA"
                     /locus_tag="OQQ76_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HCS1969402.1"
                     /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV
                     KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE"
     gene            complement(10071..10211)
                     /locus_tag="OQQ76_002988"
     CDS             complement(10071..10211)
                     /locus_tag="OQQ76_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hok/Gef family protein"
                     /protein_id="HCS1969403.1"
                     /translation="MSQKSLTAITFCVTAILIIWMLHGSLCEIRMSFWGAEFAAFLQC
                     KQ"
BASE COUNT         2753 a         2370 c         2667 g         2679 t
ORIGIN      
        1 caataagttg gcagcattac caatagttgg ttataaatac gtctttagtt catcagcact
       61 aaaactcagg ctttggctga ttacatttat agcagcataa tatgtttcta cagttttata
      121 atgattatga tgaatggcta tatgaacagc tgacatgttg tcatgatttt tagcggccaa
      181 cagtgtgaat aactgacgtt gactaaaaga atattttttt gcaaaaatat tcagcgtcga
      241 tatataagat aacacgacgt cttcattacc cttgctcatg gcgatgtata atacaggggt
      301 tccatgtgct gtagcgcctt ttaataaatc catgatgtta gctttgctca acttgtattt
      361 aaaggcgatg ccattaattt tagagaggaa ccgtgtgaca cacaaagggt gattattttc
      421 cattgcagca aacaacccta gttcaccatc acgtgttttc attgctaaaa tatccatcac
      481 tatttttttg tttaaaagct cttgtgctat tggagtggtt aatgcattca gaaagatatc
      541 gattgtttca tcgaacccat acaacatgga gatatagagc ccaggtgttt cgttagcact
      601 tttagtttgc agtaatttaa ccagattatc ttcatgaatg atatgattgt atatcagtga
      661 ctgaatttct tgcataaata tttttacgtt gtcagtatgt ccgttcatca tagccagaaa
      721 taaagcaggt gtaccaacgc tattctgcgc agttattatt tcaatgattt ctttttcagg
      781 gagtatgggc aactgtttga ataatgtaat aagctgttga gtctggcctg tggccattat
      841 taacaacatt gccgatggat gtataggggc aaatggcatt cgtgatgcaa tacccgcgaa
      901 aatagcccct ggaactccca caggtaatag gggcagaata gcaattgcac agttgcgaac
      961 atacctgtca gcccagctct gagcatcggg acctgaactg atgaacttat caagcgaaag
     1021 aaagccccgt gctgtcctgt gggtgcctct gacggcaacg ttggtatcgt tcgggtcgta
     1081 gacggacact acatagttta attgtccata cactaactgc tttattcgta gccttactga
     1141 caaagtatga ttgtctatat ataaaatcgc ggacatatga ctgacattgt ttgccatcat
     1201 tcgacaaaag aaaatatcta aagcgaagcc aaaatcctta ctcgcgataa cgcgactccc
     1261 tgcaggagga tggcgaagta atgctctgaa ctccgcatcc cggactaagg ggacatgctg
     1321 ctgtatggat tcaacggagg agtaatgttt aatcaggttg actttgcctt ttccatttct
     1381 caatgaatca agggcgtatt gcaatgacag atggcgacaa aaaatagcgt cagaaggaga
     1441 ttgcaaaaaa catgcactac cattgagatt tactgttggt tgtatagttt tttctctatg
     1501 gcttttttta gacagtttca tacaatggtt acgatcttcg gcagttaact gttcctgctc
     1561 aatataatcc agtatgcttc gcaaatggtt agccttaata ggcgtggttt ccagaaataa
     1621 gggaatgatt tcttttttat agtgtaatgt aataagtata ttttctgcat ggatgggtga
     1681 agtggcaaag ttaatgataa aaagggcagt ggagtaacaa ttttgtgata tttttcgaca
     1741 gtttgcggta aattcctgag taatacagta tgacagcatc gaacttaagt cagaggtatc
     1801 aagtagggtg atgagttggc gcgcaaattg attaataagc tctgatgaag gcgttggtat
     1861 gtcgctatcg atgtgcaatc tatgaggaga cttataatga gttctgataa tgatatcgtt
     1921 ttgactcata atctattcac cttatatata ctggaggttt tgaggatgat gattaattat
     1981 tatcgccaga acgaaatgtg cacgaaaaat tgctataaga attgtgtcac ttttatcatt
     2041 gtgatatgac cacttcgtca ttaatctcat gatcgtttaa atactaccgc caaatcacgc
     2101 aacgaacttt gctggattca gtttatgctg ctgtaaatcc gctcgcagta aacctttcag
     2161 acgcaccgtg atgttatcag tggttcttta agcgttttgc tggtgtactc actacaaacg
     2221 aattgcgaat cgaatcaatg tgaaacggaa aggtacaatc tccctttttt tagtgttaac
     2281 atcgttcaac cgggtggaag gtgagaggtt aatgtctttc atttgtgtac ctgattgcga
     2341 accaatttag catttgttgg ctagatggtt tcgcaatgaa ctgttaataa acaaattttt
     2401 ctttgtatgt gatctttcgt gtgggtcacc actgcaaata aggatataaa atgcctgtta
     2461 taactcttcc tgatggcagc caacgccatt acgaccacgc tgtaagcccc atggatgttg
     2521 cgctggacat tggtccaggt ctggcgaaag cctgtatcgc agggcgcgtt aatggcgaac
     2581 tggttgatgc ttgcgatctg attgaaaacg acgcacaact gtcgatcatt accgccaaag
     2641 acgaagaagg tctggagatc attcgtcact cctgtgcgca cctgttaggg catgcgatta
     2701 aacaactttg gccgcatacc aaaatggcaa tcggcccggt tattgacaac ggtttttatt
     2761 acgacgttga tcttgaccgc acgttaaccc aggaagatgt cgaagcactc gagaagcgga
     2821 tgcatgagct tgctgagaaa aactacgacg tcattaagaa gaaagtcagc tggcacgcag
     2881 cgcgtgaaac tttcgccaac cgtggggaga gctacaaagt ctccattctt gacgaaaaca
     2941 tcgcccatga tgacaagcca ggtctgtact tccatgaaga atatgtcgat atgtgccgcg
     3001 gtccgcacgt accgaacatg cgtttctgcc atcatttcaa actaatgaaa acggcagggg
     3061 cttactggcg tggcgacagc aacaacaaaa tgttgcaacg tatttacggt acggcgtggg
     3121 cagacaaaaa agcacttaac gcttacctgc agcgcctgga agaagccgcg aaacgcgacc
     3181 accgtaaaat cggtaaacag ctcgacctgt accatatgca ggaagaagcg ccgggtatgg
     3241 tattctggca caacgacggc tggaccatct tccgtgaact ggaagtgttt gttcgttcta
     3301 aactgaaaga gtaccagtat caggaagtta aaggtccgtt catgatggac cgtgtcctgt
     3361 gggaaaaaac cggtcactgg gacaactaca aagatgcaat gttcaccaca tcttctgaga
     3421 accgtgaata ctgcattaag ccgatgaact gcccgggtca cgtacaaatt ttcaaccagg
     3481 ggctgaagtc ttatcgcgat ctgccgctgc gtatggccga gtttggtagc tgccaccgta
     3541 acgagccgtc aggttcgctg catggcctga tgcgcgtgcg tggatttacc caagatgacg
     3601 cgcatatctt ctgtactgaa gaacaaattc gcgatgaagt taacggatgt atccgtttag
     3661 tctatgatat gtacagcact tttggcttcg agaagatcgt cgtcaaactc tccactcgtc
     3721 ctgaaaaacg tattggcagc gacgaaatgt gggatcgtgc tgaggcggac ctggcggttg
     3781 cgctggaaga aaacaacatc ccgtttgaat atcaactggg tgaaggcgct ttctacggtc
     3841 cgaaaattga atttaccctg tatgactgcc tcgatcgtgc atggcagtgc ggtacagtac
     3901 agctggactt ctccttgccg tctcgtctga gcgcctccta tgtgggcgaa gacaacgagc
     3961 gtaaggtacc ggtaatgatt caccgcgcaa ttctggggtc gatggaacgt ttcatcggta
     4021 tcctgaccga agaattcgct ggtttcttcc cgacctggct tgcgccagtt caggttgtta
     4081 tcatgaatat taccgattca cagtctgaat acgttaacga attgacgcaa aaactatcaa
     4141 atgcgggcat tcgtgttaaa gcagacttga gaaatgagaa gattggcttt aaaatccgcg
     4201 agcacacttt gcgtcgcgtc ccatatatgc tggtctgtgg tgataaagag gtggaatcag
     4261 gcaaagttgc cgttcgcacc cgccgtggta aagacctggg aagcatggac gtaaatgaag
     4321 tgatcgagaa gttgcaacaa gagattcgca gccgcagtct taaacaattg gaggaataag
     4381 gtattaaagg cggaaaacga gttcaaacgg cgcgccctaa ccgtatcaat ggcgaaattc
     4441 gcgcccagga agttcgctta acaggtctgg aaggcgagca gcttggtatt gtgagtctga
     4501 gagaagctct ggagaaagca gaagaagccg gagtagactt agtcgagatc agccctaacg
     4561 ccgagccgcc ggtttgtcgt ataatggatt acggcaaatt cctctatgaa aagagcaagt
     4621 cttctaagga acagaagaaa aagcaaaaag ttatccaggt taaggaaatt aaattccgtc
     4681 ctggtacaga tgaaggcgac tatcaggtaa aactccgcag cctgattcgc tttctcgaag
     4741 agggtgataa agccaaaatc acgctgcgtt tccgcggtcg tgagatggcg caccagcaaa
     4801 tcggtatgga agtgcttaat cgcgtgaaag acgatttgca agaactggca gtggtcgaat
     4861 ccttcccaac gaagatcgaa ggccgccaga tgatcatggt gctcgctcct aagaagaaac
     4921 agtaaggcct tcaagtagca ctgtctgtgg agccttcggg cttcacaggc tttgttcgcc
     4981 tttgtttcgt ttattaacaa tgcgaagtgg aagttattaa aatgccaaaa attaagaccg
     5041 tacgcggtgc tgctaagcgc ttcaaaaaaa ccggtaaagg tggttttaag cacaagcacg
     5101 ctaacctgcg tcacattctg accaaaaaag cgaccaaacg taaacgtcac ctgcgtccga
     5161 aagccatggt ttccaaaggc gatctgggcc tggtaatcgc gtgcctgccg tacgcataag
     5221 ccgttaacgt ttttaacttt ttaattagaa tatagataca ggagagcaca tatggctcgc
     5281 gtaaaacgtg gtgttattgc acgcgcacgt cacaagaaaa ttttgaaaca agctaaaggc
     5341 tactacggtg cgcgttctcg cgtataccgc gttgccttcc aggctgttat caaagctggt
     5401 cagtatgctt accgtgaccg tcgtcaacgt aagcgtcagt tccgtcaact gtggattgca
     5461 cgtatcaacg cagcagcacg tcagaacggt atttcttaca gcaaattcat caatggcctg
     5521 aaaaaagcct ctgttgaaat cgaccgtaag atcctggctg atatcgcagt attcgacaaa
     5581 gtagcgttca ccgctctggt tgaaaaagcg aaagcagctc tggcataagc cagttgaaag
     5641 agggagctag tctccctctt ttcgtttcaa cgccatcaaa acattgactt ttatcgccgt
     5701 agccttttca ataaaggtct tttgaagagt accaaaaggt aacgcaagca atgaatgctg
     5761 ctattttccg cttctttttt tactttagca cctgaatcca ggaggctagc gcgtgagaag
     5821 agaaacggaa aacagcgcct gaaagcctcc cagtggaggc tttttttgta tgcgcgtttt
     5881 gaaaaataaa aagccagtct atcaggcgta attgtcgcag ccagtctgga tacggccagc
     5941 gcggagaaac cggagcgtat ttaagtacgt gagaatttcg agcactgccc gggaccaaaa
     6001 tggcaagtaa aatagcctga tgggataggc tctaagtcca acgaaccagt gtcaccactg
     6061 acacaatgag gaaaaccatg tcacatctcg cagaactggt tgccagtgcg aaggcggcca
     6121 ttagccaggc gtcagatgtt gccgcgttag ataatgtgcg cgtcgaatat ttgggtaaaa
     6181 aagggcactt aacccttcag atgacgaccc tgcgtgagct gccgccagaa gagcgtccgg
     6241 cagctggtgc ggttatcaac gaagcgaaag agcaggttca gcaggcgctg aatgcgcgta
     6301 aagcggaact ggaaagcgca gcgctgaatg cgcgtctggc ggcggaaacg attgatgtct
     6361 ccctgccagg tcgtcgcatt gaaaacggcg gtctgcatcc ggttacccgt accatcgacc
     6421 gtatcgaaag tttcttcggt gagcttggct ttaccgtggc aaccgggccg gaaatcgaag
     6481 acgattatca taacttcgat gctctgaaca ttcctggtca ccacccggcg cgcgctgacc
     6541 acgacacttt ctggtttgac actacccgcc tgctgcgtac ccagacctct ggcgtacaga
     6601 tccgcaccat gaaagcccag cagccaccga ttcgtatcat cgcgcctggc cgcgtttatc
     6661 gtaacgacta cgaccagact cacacgccga tgttccatca gatggaaggt ctgattgttg
     6721 ataccaacat cagctttacc aacctgaaag gcactctgca cgatttcctg cgtaacttct
     6781 ttgaggaaga tttgcagatt cgcttccgtc cttcctactt cccgttcacc gagccttctg
     6841 cagaagttga cgtcatgggt aaaaacggta aatggctgga agtgctgggt tgcgggatgg
     6901 tgcatccgaa cgtgctacgt aacgttggca tcgacccgga agtttactct ggtttcgcct
     6961 tcgggatggg gatggagcgt ctgactatgt tgcgttacgg cgtcaccgac ctgcgtttat
     7021 tcttcgaaaa cgatctgcgt ttcctcaaac agtttaaata aggcaggaat agattatgaa
     7081 attcagtgaa ctgtggttac gcgaatgggt gaacccggcg attgatagcg atgcgctggc
     7141 gaatcaaatc actatggcgg gcctggaagt tgacggtgta gaaccggttg ccggtagctt
     7201 ccacggcgtg gtcgttggtg aagtggttga gtgtgcgcag catccgaacg ctgacaaact
     7261 gcgtgtgaca aaagtgaatg tcggcggcga tcgcctgctg gacatcgtct gtggtgcgcc
     7321 aaactgccgt cagggcctgc gtgtggcggt agctaccatt ggtgctgttc tgccgggtga
     7381 tttcaaaatt aaagcggcga aactgcgtgg cgaaccgtct gaagggatgc tgtgctcctt
     7441 ctctgaactg ggaatttctg acgatcacag cggcattatc gaactgcctg cagatgcgcc
     7501 gattggcact gacatccgcg aatacctgaa actcgatgac aacaccatcg aaatcagcgt
     7561 aacgccaaac cgtgccgact gcttaggtat cattggtgtt gcgcgtgacg ttgccgtgct
     7621 gaatcagctg ccgctggttg aaccggaaat cgttccggtt ggtgcgacca tcgacgacac
     7681 gttgccgatt acagtcgaag cgcctgaagc ctgcccgcgc tatcttggcc gtgtggtaaa
     7741 aggcattaac gttaaagcgc caactccgct gtggatgaaa gaaaaactgc gtcgttgcgg
     7801 gatccgttct atcgatgcag ttgttgacgt caccaactat gtactgctcg aactgggcca
     7861 gccgatgcac gctttcgata aagatcgcat tgaaggcggc attgtggtgc ggatggcaaa
     7921 agagggcgaa acgctggtgc tgcttgatgg cactgaagcg aagctgaatg ctgacactct
     7981 ggtcatcgcc gaccacaaca aggcgctggc gatgggcggc atctttggtg gcgaacactc
     8041 tggcgtgaat gacgaaacgc aaaacgtctt gctggaatgc gctttcttca gcccgctgtc
     8101 tatcaccggt cgtgctcgtc gtcatggcct gcatactgat gcgtctcacc gttatgagcg
     8161 tggcgttgat ccggcactgc agcacaaagc gatggaacgt gcgacccgtc tgctgatcga
     8221 catctgcggt ggtgaggctg gtccggtaat tgatatcacc aacgaagcaa cgctgccgaa
     8281 gcgtgcaacc atcactttac gtcgtagcaa actggattgc ctgatcggcc atcatattgc
     8341 tgatgaacag gtaactgaca ttctgcgtcg tctcggctgc gaagtgaccg aaggcaaaga
     8401 cgagtggcag gcagttgcgc cgagctggcg tttcgatatg gagattgaag aagatctggt
     8461 cgaagaagtc gcgcgtgttt acggctacaa caacatcccg gatgagccgg tacaggcaag
     8521 cctgattatg ggtactcacc gtgaagctga cctgtcgctc aagcgcgtga aaacgctgct
     8581 caacgacaaa ggctatcagg aagtgatcac ctacagcttc gttgatccga aagtgcagca
     8641 gatgatccat ccaggcgttg aagccttact gctgccaagc ccgatctctg ttgaaatgtc
     8701 agcaatgcgt ctttctctgt ggaccggcct gctggcaacc gtggtgtaca accagaaccg
     8761 tcagcagaac cgtgtgcgca ttttcgaaag cggtctgcgt ttcgtaccag atactcaggc
     8821 accgttgggc attcgtcagg atctgatgtt agccggtgtg atttgcggta accgttacga
     8881 agagcactgg aacctggcaa aagagaccgt tgatttctat gatttgaaag gcgatcttga
     8941 atccgttctc gacctgaccg gtaaactgaa tgaggttgag ttccgtgcag aagcgaatcc
     9001 ggcactgcat ccggggcaat ccgcagcgat ttatctgaaa ggggaacgta ttggttttgt
     9061 tggagttgtt catcctgaac tggaacgtaa actggatctt aacggtcgca ctctggtgtt
     9121 cgaactggag tggaacaagc tcgcagaccg cgtggtgcct caggcgcgcg agatttctcg
     9181 cttcccggcg aaccgtcgtg acatcgcggt ggtggtcgca gaaaacgttc ccgcagcgga
     9241 tattttatcc gaatgtaaga aagttggcgt aaatcaggta gttggcgtaa acttatttga
     9301 cgtgtaccgc ggtaagggtg ttgcggaggg gtataagagc ctcgccataa gcctgatcct
     9361 gcaagatacc agccgtacac tcgaagaaga ggagattgcc gctaccgtcg ccaaatgtgt
     9421 agaggcatta aaagagcgat tccaggcatc attgagggat tgaacctatg gcgcttacaa
     9481 aagctgaaat gtcagaatat ctgtttgata agcttgggct tagcaagcgg gatgccaaag
     9541 aactggttga actgtttttc gaagagatcc gtcgcgctct ggaaaacggc gaacaggtga
     9601 aactctctgg ttttggtaac ttcgatctgc gtgataagaa tcaacgcccg ggacgtaacc
     9661 cgaaaacggg cgaggatatt cccattacag cacggcgcgt ggtgaccttc agacccgggc
     9721 agaagttaaa aagccgggtc gaaaacgctt cgcccaaaga cgagtaatct gatctaacta
     9781 aaaaggccgc tctgcggcct tttttctttc aataactaat tgatttataa tgttttatat
     9841 ctcttcgttc cacgatgcgt ccacatttag tggggggagg ggagtaagcc cgctacattg
     9901 tgggctttgt cttatagtct gatcactgtt tcaagtcggt gaggacacca aaaagaaacc
     9961 ccgcagtttt tacgctgcgg gtttgttgtt catgtctgtg agatagggtg ccttatcgac
    10021 cttaccctgg caaccgattg acgggggatt gctcccccgt cgcggtttcc ttactgctta
    10081 cactgtaaga acgccgcaaa ctccgctccc cagaagctca tccgtatttc gcacagcgaa
    10141 ccgtgcagca tccagatgat gaggattgcc gtcacgcaga acgtgatggc cgtaagcgat
    10201 ttttgcgaca tagcgcttgc tcctttttcg gggaggcgct aacctatcac ttgcttaggg
    10261 tagacggtta gggcctcggt taaacaaaaa tgttttccgg ggcctttcca catctggcct
    10321 tcaggtattc cctccgacca tcagccgaaa ggcacccgcg cgtaatctat cgcttttttg
    10381 ttactccggc aattctgctc gttaattctg aggtaagggc aaactcatct gattgtttcc
    10441 tctgtgtgaa gttggcagtt catgccacg
//
LOCUS       DAJVUN010000135        10394 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.135, whole genome shotgun sequence.
ACCESSION   DAJVUN010000135 DAJVUN010000000
VERSION     DAJVUN010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10394
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.135"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            420..746
                     /locus_tag="OQQ76_002989"
     CDS             420..746
                     /locus_tag="OQQ76_002989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000828066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HCS1969404.1"
                     /translation="MKRNLPLIILLSSLVMGCTQHKTDMPRQLVKALPQYPAYAAANY
                     IKGRVDVRFDIGADGTVTRIEFIRSEPHHLFDEQVVKAMAKWRFEKDRPCKGVKKTFI
                     FSPSAP"
     gene            complement(878..1078)
                     /locus_tag="OQQ76_002990"
     CDS             complement(878..1078)
                     /locus_tag="OQQ76_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000095744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlcI/YnfO family protein"
                     /protein_id="HCS1969405.1"
                     /translation="MSSKNRTRRTTTRNIRFPNHMIEQINIALEHKGSGNFSAWVIEA
                     CRRRLATDATHLRPASMTNNEK"
     gene            1120..1485
                     /locus_tag="OQQ76_002991"
     CDS             1120..1485
                     /locus_tag="OQQ76_002991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HCS1969406.1"
                     /translation="MAELRTLQSRIKTLNTRRVNILKGEQRRVSGSARVSLKRHIWLR
                     DAGQCRLCGRVVDLCDSELDHRIALQFGGGNEETNLWTLCTECHRQKSAREAASDMPD
                     PTLPEVSGGSGREDDIIGL"
     gene            1776..2339
                     /locus_tag="OQQ76_002992"
     CDS             1776..2339
                     /locus_tag="OQQ76_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HCS1969407.1"
                     /translation="MLTTQKRKFALALMSGKNKTASAIAAGYSAKTARVKGSQLAKDP
                     EVLAFIARKQCETVEVDEVPVYRQKKSEQEDKPRRREAAAIPQPDENNPEMPPPAVMS
                     HGIEYMEDGLPDPVKAMGQILVENLSIDPKLALDAAWRLAQFTHHKKGDAGKKSAKGD
                     AAKKAANRFAVPPPPRLVVNNDNEGNG"
     gene            2336..3997
                     /locus_tag="OQQ76_002993"
     CDS             2336..3997
                     /locus_tag="OQQ76_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HCS1969408.1"
                     /translation="MIPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRI
                     VDAPGSPTFGESCAQWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIM
                     MTALLLNWRQAAGYTILAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRV
                     TDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVY
                     TTTQSNEPPAGVFRQKLQYARDVRDGKINDPHFLPVIFEHPPEMVESGAHLLMENLAM
                     VIPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEE
                     QGRCINLDDILRRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVV
                     RRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQIL
                     DSLAEAGIPDGIVVGIRQGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPK
                     GNAILITKQASGRGKIDPLMALFNAVSLMSLNPEPKKKEYAVFFI"
     gene            4061..5997
                     /locus_tag="OQQ76_002994"
                     /pseudo
     CDS             4061..5997
                     /locus_tag="OQQ76_002994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309570.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
     gene            6042..6263
                     /locus_tag="OQQ76_002995"
     CDS             6042..6263
                     /locus_tag="OQQ76_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969409.1"
                     /translation="MAKIRYLQGTHDARAGDIRDVAQPCAEVLVRLGKAEYITVRRPA
                     GQKKKRDAEHGECGTFYSEPEKTRNQDVT"
     gene            6209..8529
                     /locus_tag="OQQ76_002996"
                     /pseudo
     CDS             6209..8529
                     /locus_tag="OQQ76_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001365916.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
     gene            8526..8852
                     /locus_tag="OQQ76_002997"
     CDS             8526..8852
                     /locus_tag="OQQ76_002997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage gp6-like head-tail connector protein"
                     /protein_id="HCS1969410.1"
                     /translation="MTALLTLEEIKAHLRVDHDADDDMLMDKVRQATAVLLAYIQGSR
                     DKVIREDGELIQGEALTRMKGAAMRLTGMLYRNPDLAEREELLQGELPFSVSVLIYDL
                     RCPTVL"
     gene            8862..9212
                     /locus_tag="OQQ76_002998"
     CDS             8862..9212
                     /locus_tag="OQQ76_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HCS1969411.1"
                     /translation="MAISAGRLTQMISVLNPVLTRNAAGEMTEEWVSCGKIHADIRGR
                     SSRERMQSGAEMAQAEIRIWVRGQSGREITAASRLHVLSGPWRDRILNVVGLPVPDAT
                     GGRLEILCRLGGEK"
     gene            9209..9655
                     /locus_tag="OQQ76_002999"
     CDS             9209..9655
                     /locus_tag="OQQ76_002999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HCS1969412.1"
                     /translation="MIEILLDFSGLEDISRDLQLLSGAENNRVLREATRAGANVLKEE
                     VVSRTPVRRGKLRRNVVILSRRSRDGGMESGVHIRGVNPDTGNSDNTMKADNPRNAFY
                     WRFVEMGTVNMPPHPFVRPAFDVRSEQAAQVAIARMNRAIDEVLRR"
     gene            9652..9996
                     /locus_tag="OQQ76_003000"
     CDS             9652..9996
                     /locus_tag="OQQ76_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3168 domain-containing protein"
                     /protein_id="HCS1969413.1"
                     /translation="MTEADLYPHLAHLADGQVYPYVAPLLDGRPSVALPWVVFSLISS
                     VSADVMGGQAESSVSVQIDVYAGTVTQARQIRQDAREAIMLLAPGSVSEMQDYIPENR
                     CYRATLEFQVTV"
     gene            10062..>10394
                     /locus_tag="OQQ76_003001"
     CDS             10062..>10394
                     /locus_tag="OQQ76_003001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969414.1"
                     /translation="MSALYERSQLTQVMISSAPATAETMDKAEYLRLDCTIKEVQFTA
                     GQKQDIDVTTLCSTEQENINGLGASSEISMSGNFYLNQAQNALRDAYDNDALYAFKVL
                     FPSGKGFKF"
BASE COUNT         2312 a         2549 c         3277 g         2256 t
ORIGIN      
        1 ctgcttaaaa aaagaacaaa tggtagtgtc cgctattgcc agtacacctc agactatatc
       61 cgcactcagt gcctgaacta agttttgctg atgcgccgta tcgtcgctgt attccctcat
      121 taacagagac cgcagcccga cagggagact cctctgcgcg agtgtgcggg gataatctaa
      181 aacgatacac accggggttt accgcgttaa cggagcgcgg cgttgtcccc tcatagtcgc
      241 cagtccggtg cgatggtgga agaaacagga cgatgtgtta cctcgcaagc cctgttatgt
      301 catgtgtctg atttgtgatt taagtcggat aattgtcgtt gccattaagc agaggattga
      361 tgaccgacag ggcggcattg ttagaataag acttattttt atctgtgcgg ggaatgaaaa
      421 tgaaaagaaa tcttccgtta attattttgt tgtcttctct ggttatgggc tgtacgcaac
      481 ataaaacaga tatgccccga cagttggtta aggcattacc acaatatccg gcctatgcag
      541 cggcaaatta tataaaggga cgggttgatg tgaggtttga tattggtgct gatggtactg
      601 tcacccgaat tgagtttatt cgttcagagc cgcaccatct gtttgatgag caggttgtaa
      661 aggcgatggc aaaatggcga tttgagaagg acaggccgtg taaaggcgtg aagaaaacgt
      721 ttatctttag tccttccgca ccctgattat ttcatcagaa attaattatc actctgttgt
      781 tattctgtac atcccggcag ggtaagtctt gttccgtcgg atatgaagat gaaatattgt
      841 tggaggacag tgggtacctg ctcctgtaac cgaacgttca tttctcgtta tttgtcatgc
      901 tggccgggcg cagatgcgtt gcatctgttg ccagccttct cctgcaggct tcaataaccc
      961 acgctgaaaa gttaccggac cctttatgct caagggcgat gttgatctgt tcaatcatgt
     1021 gattggggaa acggatattg cgggttgtgg ttctgcgggt acggtttttc gatgacatat
     1081 ttatttcctt tactgattgc catatgacgg ggattttaca tggctgagct tcgtacactc
     1141 cagagcagaa tcaaaacact gaatacccga cgggtgaata ttctgaaggg tgaacagcgt
     1201 cgtgtcagtg gcagtgcacg tgtttccctc aagcgtcata tctggctcag ggacgccggg
     1261 cagtgccgtc tctgtggtcg tgtggttgac ctctgtgaca gtgaactcga tcaccgaatt
     1321 gcacttcagt tcggtggtgg taatgaggag acgaatctct ggacgctctg taccgaatgc
     1381 catcgacaaa agtctgctcg tgaagcggcg agtgatatgc cggatccgac gctgccggag
     1441 gtgtccggag gtagtggcag agaggacgac atcatcggac tgtaacccga ccccgggggg
     1501 tatcatccgg cgtaaaaaac gatcgctttg gacaccgcgc cccctctcac gcagagaaaa
     1561 aattcccgtt tcaggccagt taacatgtta actggctgtc cgggtatttt tgcggttttt
     1621 atctttatta ttcagtttgt tgtgcgaaaa aaaatgttaa ctggcttttt cagaaaatgt
     1681 taaccaggca gcagttaaca tttgcggcat gagacgccgg gaaaaatggg ctgaaccata
     1741 cccggctgag tgcgttctgg acccgggagg aggctgtgct gacaacgcaa aaacgaaaat
     1801 ttgcgctggc gctcatgtcc gggaaaaaca aaacagcgtc agccattgcc gccggttatt
     1861 cggcgaagac cgccagggtt aaaggctcgc agctggcaaa agatccggag gtgctcgcgt
     1921 ttatagcccg taaacagtgc gaaacggtgg aggtggatga ggttcctgtt taccggcaga
     1981 aaaaatcaga gcaggaggat aaaccccgtc gccgtgaggc ggctgcaata ccacagccgg
     2041 acgaaaacaa tccggagatg ccaccgcccg cggtgatgtc tcatggtatt gaatatatgg
     2101 aggatggtct tcccgatccg gtgaaagcta tggggcagat cctggtggaa aacctcagca
     2161 ttgatccgaa actggcactg gatgcggcct ggcgactggc gcagttcaca caccataaaa
     2221 aaggcgatgc cggtaaaaaa tcggcaaaag gtgatgccgc gaaaaaagcg gctaaccgtt
     2281 ttgcggtacc accaccacca cgactggtgg tgaataacga taatgagggc aacggatgat
     2341 acctgtatgg agcacggcct gcccggactg ggcagagcgc ctgaaaaagg ggctgtcgat
     2401 tattccggct ccgatttatc cggaccaggc cgcacatgcc ctggcgattt ttaaacaatt
     2461 gcggattgtg gatgcaccgg gtagcccgac gttcggggag tcctgtgcac agtgggtgtt
     2521 tgacctggtg gcggctctgt ttggctccta cgatgcgcag accggtgtcc gccatatcaa
     2581 ggaagtgttc attctgatac ccaaaaaaaa cagcaagtcc acactggccg ccgggatcat
     2641 gatgacggcg ctgttactga actggcggca ggcggcgggt tacacgattc tggccccgac
     2701 tgtggaggtg gcagccaacg ccttcaatcc tgccagggat atggtacgac gggacgatga
     2761 tctggatgac ctctgtcagg tgcagacaca tatccggacc atcacccacc gggtgacgga
     2821 caccaccctg aaggtggtgg cagccgatcc gaatacggtg tccggtatca agtccgtggg
     2881 gacgctgatt gatgagttgt ggctgtttgg caagcagtac aaggcggagg acatgttacg
     2941 tgaagccatc ggcgggcttg cctcccgccc ggaagggttt gtggtgtata cgaccaccca
     3001 gtcgaatgaa ccgcccgccg gggtgttcag acaaaaactg cagtacgccc gggatgtgcg
     3061 cgacggcaaa attaatgatc cgcactttct gccggtgata tttgaacacc ctcctgaaat
     3121 ggtggaaagc ggggctcacc tgctgatgga aaacctcgcc atggtcattc cgaatctcgg
     3181 ctattcagtg gatgaggcct ttctgtaccg ggagtaccgt aaagcccggg aagccggtga
     3241 agagacattc cgggggttca tgtcaaaaca cgccaatgtg gaaattggtc ttgccctgcg
     3301 ctctgaccgc tgggcggggg ctgatttctg ggaagagcag ggccgttgta tcaacctgga
     3361 cgatatcctg cgtcgtgctg atgtggtgac ggtggggatt gacggcggag ggctggatga
     3421 tctgctgggg atgtatgtga ttgggcgtga ccgggagacc cgcgaatggc tgggctgggg
     3481 ccatgcctgg gcgcatgaaa ccgcggtggt ccgacggaag agcgaggcgt cccggtttca
     3541 ggatcttgtt gcctgtggag atatgaccat tgtccggcgt gtcggggatg acacggcgga
     3601 agtggcggaa tatgtgcgtc gcattcatga ggctgagtta ctggaccata tcggtattga
     3661 cccgtcaggg gtggggcaga ttctggattc actggcggaa gccgggatcc ccgacggaat
     3721 tgtggtgggg atacgccagg gctggaaact gggcggggcc attaaaacca ccgagcgcaa
     3781 actggctgaa ggggtgctgg tgcatggtga ccagcccctg atggcctggt gtgtcggcaa
     3841 tgcccgggtg gagcctaaag gtaacgccat tcttatcacc aaacaggcca gtggacgggg
     3901 aaaaattgac ccgctgatgg cgctgttcaa tgcggtctcc ctgatgtccc ttaacccgga
     3961 accgaaaaag aaagaatatg cggttttttt catataaccc tgttcacact gtaaccatca
     4021 cgaaccgctc cggcggtttt tttattttca ggaggctgat gtgactctta aacgggcctg
     4081 ttccctgctg acggtgaaat ccttcagtga ggatgaatgg gtgatcaccg ggattgcgtc
     4141 aacgccttct ccggatcggg atggtgacat cctggagccg gagggcgcgg agtttggcag
     4201 tgcgatcccg tttctctggc agcatgacca ttcccgcccg gtggggcagt gtacggtgcg
     4261 ccgggtcagc gaagggctgg aaatcacggc aacactggtg aagcccgtac cggatatgcc
     4321 gtcgcaactg gctgcccggc tggatgaggt ctgggcggcc attaagaccg ggctggtcag
     4381 gggctgtccg tgggcttccg tccccatgaa tacacctttc tggacggagg cggactgcat
     4441 tttctgcgct gggaactgat ggaggtgtct gccgtcaccg tgcccgcgaa tgcggaatgc
     4501 accatccgga ccattaaatc ttacgacagc ccgttttctg ccgcgtccgg caaccggaaa
     4561 ccggtggtga aaatcgcatc ttctgccggc gctgcggcac agtcaacaac cgtttttcat
     4621 aaggaaaaga ccataatgaa tattggcgaa cagattaaaa gttttgaaaa caagcgtgta
     4681 gcgctggcag cctcccttga ggaggtcatg accaaagccg cagaggaagg gcgcacgctg
     4741 gatgtggagg aagaagagca ttacgacaac accgcagcgg aaatccgtca ggtggatgcg
     4801 cacctgaagc gcctgcgtga actggaagcc ggtaaggccg ccacggcgca gccggtgaaa
     4861 caggccggta acgggaatgt ggccgcggtg gcttctgcgc cggtgatccg tgtggagcag
     4921 aaactggata aggggattgg cttcgcccgc tttgccaaat cgctggctgc ggctaaaggc
     4981 gtccgatctg aagccctgga agtggcccgt cgtcagtatc cggatgacag tcgtctgcat
     5041 catgtcctga aatcggcagt gggcgcgggg accaccacgg atccgcagtg ggcaggcagc
     5101 ctgtctgaat atcaggaata cgcacaggac tttattgatt acctgcgtcc gcagaccatt
     5161 atcgggcgat ttggtcaggg cgggatccct gcacttcgtc aggtgccgtt caatatccgt
     5221 gtgcacgccc aggtgtccgg cggtgctgcc ggctgggtgg gtgagggtaa ggcaaaaccc
     5281 ctgacgaagt ttgattttga atccatcacc ttcagtcatg cgaaggtgtc ggccattgcg
     5341 gtactgacgg aagagctgat ccgtttttcc agtccggcag ctgatgcgct ggtccgtaat
     5401 gcgctggcag aagcggtggt ggcgcgtctg gacacagact ttgtggaccc gaaaaaagcc
     5461 gcagtggcag atgtctcccc ggcgtccatc acccatgatg tgaagggcaa ggcatcaacc
     5521 ggtaacccgg atgcggatac agaggcggcg tttggacagt ttgtggcagc aaacctgcag
     5581 cccaccggtg cggtctggct gatgtccagc accaatgccc tggcgctgtc catgcgtaaa
     5641 aatacgctgg gtcagaagga atacccggac atgaccctgc tgggggggac cttccagggg
     5701 ctgccggtga ttgtctccca gtacgtgggt gaccagctgg tgctggtgaa tgccccggat
     5761 atttatctgg cggatgacgg cggcgtggca gtggatatgt cccgcgaggc atcactggaa
     5821 atgcagtctg agccgaccgg cgacagtacc acgccgtcgc cggtggagct ggtttccatg
     5881 ttccagacag gcagtgtggc catccgtgcg gagcgctgga tcaactggcg tcgtcgccgt
     5941 accgcggcgg tggcggtgat caccggtgtg aactacggca gtgcgtccgg cggctgagtc
     6001 tgataaggag gacgggaggc gagcgcctcc cgtaacaggt tatggcaaag atccgatatc
     6061 tgcagggcac gcatgatgcc cgggccgggg atatccgtga tgtggcacag ccgtgcgcgg
     6121 aggtgctggt tcgcctggga aaggcggagt acatcacggt gcgacgtccg gcaggtcaga
     6181 aaaagaaacg tgatgcggag catggcgaat gtggaacctt ttacagcgaa cccgaaaaaa
     6241 ccagaaatca ggacgtgacg taagagaggc gggctggacc agcctgtttc aggcggtggc
     6301 tgagcccttt tccggcgcct ggcagcaggg cgtgaaagcc gatccggaag ccgtcctctc
     6361 ctttcatgcg gtgttttcgt gcatttcgct gatatcccag gatatcgcca aaatgcggct
     6421 gcgtcttatg cagacggatg cgcaggggat acgcagggaa actcgccggg gggatattgc
     6481 ccgcctctgt cgtcgtccca acgcccagca gaaccgcatc cagttttttg aactgtggct
     6541 gaacgccaaa ctgcgtcacg gcaatacggt ggtgctgaaa atccgtaact cccgggggca
     6601 gatcaaagaa ctgcgcattc tggactggag ccgggttgaa ccactggtgg cggatgacgg
     6661 cgaagtgttc taccgcatca cgccggaccg gaactgcggg atcactgagg cggtgacggt
     6721 gcctgcccgg gaagtgatcc acgaccggtt taactgtttt tttcatccgc ttatagggtt
     6781 gccgccggtg tatgccgccg ggctggccgc cacgcagggg catcatattc aggaaaattc
     6841 gacgtatttt ttcagaaatg gcggggaaaa cggccattct gagcaacggg gcaaaataca
     6901 accccacgac gttttcaccg gtggatgcgc agacggtgga acaactgaag atgaccgctg
     6961 aaattgtctg ttcggtgttc cgtgtcccgg cctacaagat tggcgtggga caaccgcctt
     7021 ccagtgacaa cgtggaggcg ctggagcagc agtattattc ccagtgcctg cagacgctga
     7081 ttgagtccat tgaactgtta ctggatgagg cgctggaaac gggggaaaac gagagtacag
     7141 aatttgatgt caccacgctg ctgagaatgg acagtgagcg gcgcatgaaa acgctggggg
     7201 atgcggtgaa aaatacgctt ctcacgccca atgaggcccg taaacgggag aacctgccgc
     7261 ccctggccgg cggtgatgca ctgtatcttc agcagcagaa ctacagtctg gaggcactgt
     7321 cccgtcgtga tgcccgtgag gatccgttcg cgtcgaccgg gaaaacggcc ttagcgcaac
     7381 cgcctgacgg cgcatctgac ggtaataagg caatcagtga aacagagcat gatgcggtga
     7441 aagcgatgtt cagggggatt ctgaaaaaat gaatgaacgt gaactgtcca ttattcgtgc
     7501 cctgggagaa gaattcgcca cggtgctggc ggatttacag cgcacatttg aggagaagat
     7561 gagcgcgcag gcacaagcgt ttgaagagaa actggcttcc ctgtccgctc tgttacagaa
     7621 gcatgtgacg gtggatgagg ttagccctgt tctgcaggcg atggtggatg acgcagtggg
     7681 ggccattccg ctaccgcgtg atggtcgcga ttatgatccg gaagtactga agcaggcggt
     7741 gaatgatgcg gtcgcgaaaa taccggtgcc ggcagacggc aaaagtatca cccccgatga
     7801 tgtgcgtccg atgcttgagc agatggtgaa agaggctgta agccatattc ctgttccgcg
     7861 tgatggtcgt gactacgatc cggaagtact gaagcaggcg gtgaatgatg cggtcgcaaa
     7921 tattccgcag ccggcggacg gtaaaagtct caccccggat gatgtgcgtc cgatgcttga
     7981 acagatggtg acggaggctg taagccatat ccctgttccg cgtgatggtc gtgactacga
     8041 tccggatgtt ctgcagaagg cggttctgga tgcggtgagt gccctgccgg ctccgcaggc
     8101 cgggcgtgat gccacggctc tggaaatact ccccgccatt gacgttcaaa aatcctttcc
     8161 ccggggcacg tatgccacac accagggcgg actctggcgg gcgtatgaaa aaacgcacgg
     8221 gatgcgggga tgggaatgcc tggttgacgg ggtggcggat attgacgtca gcatgacggg
     8281 tgagcggttg ttctctgtgg tggtccggca gagcagtggc cagcgtacgg aaaaaacatt
     8341 ttccctgccg gtgatgctct accgcggtgt gttcagagcc ggtgaaacct accaccccgg
     8401 cgatacggtg acgtgggggg ctcgctgtgg cactgcaaca gtatgaccga agataaaccc
     8461 ggagaagctc attcatcagc ctggaccctg gctgcaaaac gtgggcggga tgcaggaggc
     8521 ggaaaatgac ggcattactg acactggaag agatcaaggc acatctgcgt gtcgaccatg
     8581 acgcggatga tgacatgctg atggacaagg ttcgtcaggc taccgccgtg ctgctggcct
     8641 acattcaggg cagccgggat aaagtgatcc gtgaggacgg tgaactgatc cagggcgagg
     8701 cattaacccg gatgaagggg gctgccatgc gactgaccgg gatgctgtac cggaatccgg
     8761 atcttgcgga gcgggaagaa ctgcttcagg gggagctgcc gttttctgtt tccgtgctga
     8821 tttacgattt gcgttgtccg acggtgttat gaggaggggg aatggcaata tctgcaggtc
     8881 gtctgacaca gatgataagt gttctgaacc cggtgttaac ccgtaacgct gccggagaaa
     8941 tgacggaaga atgggtgtca tgcgggaaaa ttcatgcgga tatccgaggc aggagcagcc
     9001 gggagcggat gcagtccggt gcggaaatgg cgcaggcgga aatccgcatc tgggtgcgcg
     9061 gtcagtccgg tcgggaaatc acggcagcgt cacgacttca tgtgctgagt ggtccatggc
     9121 gtgaccggat cctgaacgtt gtcgggctgc ccgtgccgga tgcgaccggc gggcgtctgg
     9181 aaattctctg tcggctggga ggggaaaaat gatcgaaatc ctgctggatt tttcggggct
     9241 ggaggacatc agccgcgatt tgcagcttct gagtggtgcg gaaaataacc gggtgctgcg
     9301 tgaggcaacc cgtgcgggtg cgaatgtgct gaaagaagaa gtggtgtcac ggacaccggt
     9361 acgcagggga aaactgcgcc gcaatgtggt gatcctttcc cggcgctccc gcgatggcgg
     9421 gatggaatcc ggtgtccata tccgtggtgt taatccggac accggtaaca gcgataacac
     9481 catgaaggcg gataacccgc gcaatgcttt ctactggcgg tttgtggaaa tggggaccgt
     9541 gaatatgcca ccgcacccgt ttgtgcgccc ggcgtttgat gtgcgcagtg aacaggcagc
     9601 tcaggtggcg attgcgcgga tgaaccgggc cattgatgag gtactgagac gatgacggag
     9661 gcggatttgt atcctcatct ggcgcatctt gccgacgggc aggtgtaccc gtatgtggcc
     9721 cccctgctgg atggcaggcc gtcggtggcg cttccgtggg tggttttcag cctgatttca
     9781 tcggtgtcag cggacgtgat gggcgggcag gcggagtcct cagtgtcggt gcagatagac
     9841 gtttatgccg ggactgtgac gcaggcgcgt cagatacgtc aggacgcccg tgaagccata
     9901 atgctgctgg ccccgggatc cgtcagtgaa atgcaggact atattccgga aaaccgctgt
     9961 taccgtgcaa ccctggagtt tcaggtcacg gtgtgacttt ttcttttttt ctacaaaacc
    10021 ataccccgcc gcgtgcgggt tttttattat caggaggcag aatgtctgct ttgtatgaac
    10081 gctcacagct gacgcaggtg atgatttcat ctgccccggc gactgctgaa actatggata
    10141 aggcggaata tctgcgcctg gactgcacca tcaaggaagt ccagttcacc gccggtcaga
    10201 aacaggatat tgatgtgacc acgctctgct ccacagagca ggagaacatc aacggtctgg
    10261 gggcgtcgtc tgagatttcc atgtcgggta atttttatct gaatcaggcc cagaacgccc
    10321 tgcgtgatgc ctatgacaat gacgcgttgt atgcgtttaa ggtgctgttt ccgtccggta
    10381 agggctttaa attc
//
LOCUS       DAJVUN010000136        10342 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.136, whole genome shotgun sequence.
ACCESSION   DAJVUN010000136 DAJVUN010000000
VERSION     DAJVUN010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10342
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.136"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(155..1510)
                     /gene="menE"
                     /locus_tag="OQQ76_003002"
     CDS             complement(155..1510)
                     /gene="menE"
                     /locus_tag="OQQ76_003002"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HCS1969415.1"
                     /translation="MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGF
                     AAQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQY
                     ALVLEGENTFPALTSLHIQMVEGTHSALWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL
                     ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC
                     THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS
                     TVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT
                     RDRGEMHNGKLTIVGRLDNLLFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGH
                     RPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ
                     Q"
     gene            complement(1507..2469)
                     /gene="menC"
                     /locus_tag="OQQ76_003003"
     CDS             complement(1507..2469)
                     /gene="menC"
                     /locus_tag="OQQ76_003003"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HCS1969416.1"
                     /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE
                     ISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELADTLPQAA
                     NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL
                     DANRAWTPLKGQQFAKYVNPDYRHRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE
                     PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALRLTAVISSSIESSLGLTQLAR
                     IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL"
     gene            complement(2469..3326)
                     /gene="menB"
                     /locus_tag="OQQ76_003004"
     CDS             complement(2469..3326)
                     /gene="menB"
                     /locus_tag="OQQ76_003004"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HCS1969417.1"
                     /translation="MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV
                     RNAFRPLTVKEMIQALADARYDDNVGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG
                     VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG
                     SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC
                     REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP
                     DFSKFKRNP"
     gene            complement(3341..4099)
                     /gene="menH"
                     /locus_tag="OQQ76_003005"
     CDS             complement(3341..4099)
                     /gene="menH"
                     /locus_tag="OQQ76_003005"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HCS1969418.1"
                     /translation="MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY
                     VDLPGHGGSAAISVDGFDDVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAG
                     LCGVIVEGGHPGLQNAEQRAERQRSDRQWAQRFRTEPLTAVFADWYQQPVFASLNDDQ
                     RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA
                     ELAADCHVIPRAGHNAHRENPAGVIASLAQILRF"
     gene            complement(4096..5766)
                     /gene="menD"
                     /locus_tag="OQQ76_003006"
     CDS             complement(4096..5766)
                     /gene="menD"
                     /locus_tag="OQQ76_003006"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HCS1969419.1"
                     /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN
                     SAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL
                     LTADRPPELIDCGANQAICQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH
                     AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPSLESEKQRDWFFWR
                     QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL
                     QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL
                     ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRISDYLPEQGQLFVGNSL
                     VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN
                     ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY
                     HRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLQAQVSHL"
     gene            complement(5855..7150)
                     /gene="menF"
                     /locus_tag="OQQ76_003007"
     CDS             complement(5855..7150)
                     /gene="menF"
                     /locus_tag="OQQ76_003007"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HCS1969420.1"
                     /translation="MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWL
                     ASQQTYPQFYWQQRNGDEEAAVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDP
                     SQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTT
                     TREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLN
                     LNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLEEWLM
                     ADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI
                     CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKIS
                     GNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME"
     gene            complement(7229..7534)
                     /gene="elaB"
                     /locus_tag="OQQ76_003008"
     CDS             complement(7229..7534)
                     /gene="elaB"
                     /locus_tag="OQQ76_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein ElaB"
                     /protein_id="HCS1969421.1"
                     /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAE
                     KALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR"
     gene            complement(7589..8050)
                     /locus_tag="OQQ76_003009"
     CDS             complement(7589..8050)
                     /locus_tag="OQQ76_003009"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1969422.1"
                     /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL
                     TGNNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLDT
                     CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA"
     gene            8115..9032
                     /gene="rbn"
                     /locus_tag="OQQ76_003010"
     CDS             8115..9032
                     /gene="rbn"
                     /locus_tag="OQQ76_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease BN"
                     /protein_id="HCS1969423.1"
                     /translation="MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ
                     HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE
                     TALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALN
                     AQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA
                     ALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD
                     DKGCQHLLRECRSIFPATELANDFTVFNV"
     gene            9220..10342
                     /gene="elaD"
                     /locus_tag="OQQ76_003011"
                     /pseudo
     CDS             9220..10342
                     /gene="elaD"
                     /locus_tag="OQQ76_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416772.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deubiquitinase"
BASE COUNT         2552 a         2879 c         2498 g         2413 t
ORIGIN      
        1 acgcttacgt ttattgcagc acgatttttt gaccagccat tccattgcat tatcctgttt
       61 gctaagagtt ttcacatcaa tttacagatt aacagataaa ctctttatca actgcaatgg
      121 aatggcagaa atgagaagtg aaacggaggg ttaattattg ctgacgttgc acccactctt
      181 ttagcgcctg acgtgaaatt ttaataccgc cgtttttcag ctccggcggt aaagtcagcc
      241 agcgcaccgg ttgttgaaaa cgagccagct tatctttcac ccattcgcca agatcaacgg
      301 tttgctggtc atactccacc accgctaccg gccgatgacc aaactccttg tcggcaacgg
      361 gaacgataaa cacctgcaaa accgcaggat gtgcagcaat aacacgctcg acttcttccg
      421 gctgaatacc ctcaccgcca ctgaataaca gattgtctaa acgtccgaca atggtcagct
      481 tgccattatg catctcaccg cgatcgcgcg tagcgtacca gccttcgtca ttaaccagtg
      541 aaaccagttg cccgttacgc cagtaacctt ctgccatact ggcagcccgc agccacactt
      601 cattattaac gattttcact tcccgacccg gcagcggcga accaacgtct gccaggccgt
      661 cggcttcttt cgcacatacc gtggaggcaa actcggtcag accatagccg caaaagcaac
      721 gaatcccctg ctcgcgcgcc tgttccgtca actcgaccgg gatagccgcg ccgccaagta
      781 acaccgcttt cagggaaacg gaactgcggt taaccagcaa acgccagagt tgtgttggca
      841 ccagtgaagc gtgagtacag cctgccagca tttgctccaa tggctgttta tcacgcaccg
      901 tcatccgcgc accagcgtat aaccagcgcc acataattcc ctgaccggag acgtgaaaca
      961 gcggtaaaga gagcaaccag tcatcgtgat cgccaaacgg aatcagcgat aacacacctt
     1021 gcgcactggc aagatgggcc tgataagtat ggacagcggc tttcggtaaa ccggtggagc
     1081 cggaggtcaa tgtcattgaa caaagacgtg ttggttgcca cagagctgaa tgtgtgcctt
     1141 caaccatctg aatatgcagt gaagttaacg ccgggaaagt attttctcct tccagcacca
     1201 gcgcatattg cagtgtaaga tttggcagta attcctcaag caacggttgc ggaagctgtg
     1261 gatttacggg cagcacccgc gccccgcatt gcagtaacgc cagccaggcg agcagcgttt
     1321 gcggcgtatt ccacgcccgc aacatcacgc cgctgccctc aaccacaccc tgcgccgcaa
     1381 agcccgtagc taactcatcg acgcgagcac aaagctcgcg ccagttgagt tgctcgtcat
     1441 taagacgtaa ggcgatggct tctccccgca cttgccgcca gtgacgccac ggccagtcag
     1501 agaagatcat aacaaccgct ccagtgcatc aacttccacg acaggcagcg tgctacccgg
     1561 ccagcgacgt acctgctgcg cctgcatcag atccagcgtg tccagccctg gaatggtgtc
     1621 cggcgttaac caggcggcaa tccgcgccag ttgcgttaag cctaagctcg actcaataga
     1681 agaactgatc accgccgtca gcctcaacgc gtgcgccgcc tgtacctgct cgcgtacttt
     1741 ttccagactg cccgtgagcg tgggtttgat aactaccgcg cgcacgccct cttcagccac
     1801 aaaggcaaaa tccggctcgc gcaggctttc atcccaggca atggcaatgc ctgtttcacg
     1861 ggcaaacgct cgcgaatcat cgcgggtttt gcacggctct tcgagaaacg cgatgcggtg
     1921 gcgataatcc gggttaacat atttggcaaa ctgctgacct ttcagcggtg tccaggcgcg
     1981 atttgcgtca agacgcaaat gcagatccgg aattgcctcc agcaacagat taaccaccat
     2041 gccgtcgcgc acggcttcgt acaatcccac tttgaccttc gccactttct cgcctggcat
     2101 atcagcaagt ttgaggatca gatcgtcagg atcgccatta cacagtggtg ccgcacggta
     2161 attggccgcc tgcgggagcg tatctgccag ctccgccaat gcacagctta cgccaaaggc
     2221 aacggaaggc atctgcggta gctcgcaatc gcctgccagc cagttattta cccaggcaag
     2281 cagcacgctt tgcgcctctt cccaggtttc ctggctgaag cccggcagtg gggagatctc
     2341 cccccaccct tcgcgctcgc cctcacgcag gcaaacgtac agcccgtcgc gggtttttaa
     2401 ccgcctgtcg cgcagaacca cccccgcgtc catggggatc tgccagcggt atacctgcgc
     2461 gctacgcatt acggattccg tttaaatttg ctgaaatcag gctgacgttt ctggttgaaa
     2521 gcgttgcgac cttcctgacc ttcttccgtc atgtagaaca gcatggtggc gttgcccgcc
     2581 agctcctgca gccccgcctg cccgtcacag tcggcgttca gtgcagcttt caggcagcgc
     2641 agcgccatcg gactgttttg cagcatttcg cggcaccagc gaacggtttc tttttccaga
     2701 tccgccagcg gtaccacggt gttgacaagg cccatatcca gcgcctgttt cgcgtcgtac
     2761 tgacggcaca ggaaccagat ttcccgcgct tttttctgtc cgacgatgcg agccatgtag
     2821 gaagcgcccc agccgccgtc gaaggaaccg actttcgggc cagtctgacc gaagatggca
     2881 ttatctgccg cgatagtcag gtcgcacatc atgtgcagaa cgtgaccgcc gccgatggag
     2941 tagccagcca ccatcgcgac aaccggtttc ggacaggtac ggatctgacg ctggaagtcc
     3001 agcacgttca ggtgatgtac gccggaatca tctttatagc cgccgtaatc accacgcact
     3061 ttctggtcac cgccggagca gaacgcttta tcacctgcgc cagtcagaat gatcacgccg
     3121 acgttgtcgt cataacgcgc atctgccagt gcctggatca tctcttttac cgtcagagga
     3181 cggaaggcat tgcgcacctg cggacgatta atggtgattt ttgcgatacc atcggtggat
     3241 ttttcataac gaatgtcctc gaaaccttcg gagcagtcgt gccattcaac cggtgcgtaa
     3301 agcattgctt catcaggata aatcatattg tgtcctttag tcagaaacgc aagatctgcg
     3361 ccagacttgc gattacgcca gcgggatttt cccgatgcgc gttatgtccg gcgcgaggaa
     3421 tgacatggca gtcggcagcc agttccgccg ccagggcgcg gaatttgctg tcacgttcac
     3481 cacataaata ataaaacgca aatgtgcggg cgctaaggtt agcacgtaaa tcaggctgga
     3541 cggcgagaga agtcgcctcc agcatggcgg caagggttgc gccattattg ttgctgcgca
     3601 gcgccaccag ctcccggcgt tgatcgtcat tgagcgaggc aaaaacaggc tgttgatacc
     3661 agtcggcaaa taccgccgtt aacggttctg tgcgaaaacg ctgcgcccat tggcgatcgg
     3721 aacgctgacg ttccgcacgt tgttcagcat tttgcagccc cggatgcccg ccttcgacaa
     3781 taaccccaca aagccccgcc agcccctggc aagccgccat catcgccacc cgtccgccaa
     3841 gcgagtaccc caccagccag aagtcaagga tgttgtaact aaccaaggtt ttacgcagta
     3901 agtcggtgac atcatcaaat ccatcgacgc taatcgccgc cgaaccacca tgacctggga
     3961 gatcaacata caaccgtgag tagtcggcaa acgcctcgcc cacttcttgc cattcgtggc
     4021 aatcgccgga aaaaccgtgc aaaaacacca gccagggtaa acctggtttt ccgtgttttg
     4081 cctgcgcgtg caggatcata aatggcttac ctgcgcctga agttgctgga gcgtttgcgc
     4141 accatcggtg tcgttaacca ccatttcaat caccgtggtg gttggcgtgc gccaggcgtc
     4201 ggcaaatgcc gtttcaagtt cctgccagtt ttgcggacga tgatatttca gctcgaacat
     4261 cgcggcggcg tgctcaaaat ggacgttttg cggcatcaga tagaaacgct cacgctcgct
     4321 ttgcggcgtt ggcaacagcg agaaaatttg cccgccgttg ttgttcacca caattaatac
     4381 cagcggcgca gaaacctgac gcaataacgc cagcgcgttg agatcgtaaa gtgcggagag
     4441 atcgcccaca atcgccagcg tcggtttgcc gcttgcccgc tgaacgcctg cggcggtcga
     4501 aagcagtccg tcgataccgc tggcccctcg gttactgtac accgggtaac ctgccggaag
     4561 ttgcgaaagc gcatcaatca gacgtaccac caggctgtta ccgacaaaca attgcccctg
     4621 ttcaggcaga tagtcgctga tgcgatgcgc cagttgcgct tcgccaaacg catcgcgacg
     4681 ggcaataacc gcctgcattg cctgttccgc caggcgcggg atttcaacgc accagggctg
     4741 gcgtttttct gccggatgca gctccagcca gtcggcaata ttggcaatta agcggcgtcc
     4801 acgatggtgc gccggatcaa gccgcccttc gatgtcatcc acaatccagt actcttcggg
     4861 ttcacagctt gcctgccatt gcaggagccg tttgcccgtc aggctgcttc ccagttgcac
     4921 cacaatttgc gcctgctgca gctcgctggt cgctttggca ttgcctaacc aaagatcggc
     4981 acacggcagc ggctgcccgg tttgtgacag cacatcgcca atcagcggcc agccaagagt
     5041 ttgcgcccac agggcaactt ttttgccctc ttccgcactc atgcgcccgg caaccaccac
     5101 gccgcgcttt tgtcgccaga agaaccagtc gcgctgtttt tcactttcca gactaggcgc
     5161 ttcacgcagc cacggtttgt cgtcctgcca ccagtcaccc agacgctgtt gccagctaag
     5221 cccggtatcg tccatttcgc catacagcgg ttcagcaaac gggcagttga tatggactcc
     5281 ccccgcatga agcgtaccga gagcgtggtc gatggtagaa accagccaac gtgcggggat
     5341 atcctgggtc gggcgcggca atgaaatact gtgcgtgggg tgagaggcga acattcccgg
     5401 ctggcaaatt gcctgattcg cgccgcagtc aattagctcc ggcgggcgat cggcggttaa
     5461 gagaatcagt ttttctccgg ttaacccggc ttcaatcagt gccggataga gatttgccac
     5521 cgccgtgccg gaggtcacaa tcaccgccac cggctgcttg ctgactttcg ccagccccag
     5581 cgccagatgc cccaacccac gctcatcgaa atgggtgtgg tgaatgaatg cggaattctc
     5641 cgccgccgct aacgttaacg gtgtagaacg cgagcctggg gcgatacaga tgtgtctgac
     5701 gccgtgacgc gttaatgctt ccagaatgac cgccgcccag cgtcggttaa atgcgcttac
     5761 tgacatgagt ttgtccggta tcaatattgc ggctaagtat aaggagctac aaaaatagat
     5821 tattgatatg aatcggtaat gatgcgactc attactattc catttgtaat aaagtacgca
     5881 accctgccgc tttgttgtcg atttcctgcc actcttgctc ggggtcggaa ccacggacaa
     5941 tgcccgcgcc agcatataat cgcacgacat tgccgctaat ttttgctgag cgcagggaaa
     6001 cgcagaattc gctttgttgt aatgagagat agcccgcaga accggcgtac cattctcggg
     6061 tgaacggttc gtgacgggcg ataaactgtc gcgccagatc gcgcggtaag ccagcaactg
     6121 ctgccgttgg ctgcaactga tgtaaacaga tcacatcatc cgctttgttg agtgaagtcc
     6181 agatacagcg gcgaagatgc tgcactttac gcagacgcag tacctgcggc ggtaaaacat
     6241 ccagcgtctg ggtatcggcc tgtaatcgtt ggcagatatc ttccaccacc agcatgttct
     6301 cgcgctggtt tttatcatcc gccatcagcc actcttctaa ctgctgcgcc tgcttatcat
     6361 caggatgatt tgctactgtt cccgccagcg cttcagtacg cagcgctttg tcacgccgcc
     6421 gccataaccg ttccggtgaa gagccaagaa aagcattttc gccatcaaag gccatgtaaa
     6481 aatggtagca attcagattc agtcgacgac tggcagccat catcgccgcc gcgttgaccg
     6541 gacttgcgaa atgcaggtca gttgcccgag cgagcaccac tttgtcgagc tcaccttcgg
     6601 cgatggtttt cgttgccagt tcgattaatt gcgtccagcc cgttttgtcc ggccagtgtt
     6661 gttctcgcgt ggtggttaaa tgtaacccag gcaagggctt gatactcacc agtgtggcga
     6721 taaattcttt tgcctgaatc gcatcgtgct gaagggagct ttcgctgaat agcgtcagcc
     6781 gcagcgtggc tttaccgcca cagcgtcgcc attccaagcg gggtaaaagt aaattgccct
     6841 gcgacgggtc aaaagcattc agcccccaaa tgcgtaagtc ggcgtgttcc gggtgctggc
     6901 gaagaaaacg ttgtgcctgg tccaacgacg taaaacgggt aatcgcgccc aggacggcag
     6961 cttcttcatc accattacgt tgttgccagt agaattgcgg gtacgtttgc tgactggcca
     7021 gccagctcaa ggcatcaaaa gcgtctttga gagggaaagg aatatcgata acccgaatgc
     7081 cgggtgtcgc cggaatctct tgcgacaaat ggcgcagtag attttccagc gccgtagtaa
     7141 gtgattgcac gcggacctct ccctgttaaa agcctcacat tatacggggt actacaaaaa
     7201 aaatgcagta ccccggtgta gggaggtttt aacggcgtgc cagcaacagt cctagtacca
     7261 gcccaacggc cgcgcccaca ccaattcctt gccaaggttt ttcgtggacg tagtcatcag
     7321 cacgataaac agcctgcttc gcccgatagt aataactgtc tgaaacctgg ctaacccgtt
     7381 ttttcacatc atccagcgct ttttctgcac gcgctttcag ctcaacatat ttctgatcag
     7441 cgggatcgcc agaggagcgg agcacctctt ccagtgtttc actaagcagc gtcaggtcgt
     7501 catcgatacg tgtatcacca aactgattag acattctcgt tctccatttg cgtaaaacct
     7561 gtcactaact atagacaagg gttgttgatt acgcctgaat tacctcgcgt gccatcccaa
     7621 tgtgtgggat accatcttct tcatagacct ccgtcacagg gataaaaccg aaactctggt
     7681 agaagttttg cagatgcgcc tgcgccccga ggtaaacagg cttatcaggc cagtgatgcg
     7741 tgcaggtgtc gagggtttta ctcatcagtt gctgccccac tttttcgcca cgcaacgctt
     7801 cactgacaat cacccgacca ataacgaccg gctcaagatc atcatcactt ttcagaatcc
     7861 tcgcatatgc caccagttca tcatttttcc aaccgagaat atggcgatta ttccccgtca
     7921 aatcatcacc atcgatatcc tgataagggc aattctgctc gacaacaaac accgcgcaac
     7981 gcagttgtaa taaggcataa agctgggaaa ccgataattc agagtgatgc agatcttgcc
     8041 attcaatcat aatgctctcc ttttagatgt atgccttata ctagccggaa tattttttga
     8101 aacgtgatga actcatggaa ttaatttttt taggtacttc agccggtgtg ccaacccgca
     8161 cgcgcaatgt cacggcaata ttgcttaacc tgcaacatcc gacccagagc ggactttggt
     8221 tgtttgactg cggtgaaggc acccagcatc agctactgca taccgccttt aaccctggaa
     8281 aactggacaa gatttttatc agtcaccttc atggcgatca tctttttggt ttacccggct
     8341 tgctgtgcag tcgttctatg tcaggcatta tccaaccctt aacgatttat ggtccgcaag
     8401 gtatccgtga atttgtggaa accgcgctgc ggattagcgg ctcatggacc gattatccgc
     8461 tggaaattgt cgaaattggc gctggcgaaa ttctcgatga tggcctgcgc aaagtaaccg
     8521 cttatccgct ggaacaccca ctggaatgtt atggctatcg tattgaagaa catgataaac
     8581 cgggtgcatt aaatgcccag gcattaaaag ctgctggcgt gccgcctggc ccactgtttc
     8641 aggaattaaa agcgggcaaa acaatcacgc tggaagatgg aaggcagatt aacggcgcag
     8701 attacttagc tgctccagtg ccaggtaaag cgctcgctat tttcggcgat accggcccct
     8761 gcgatgccgc acttgacctg gctaaaggtg tcgatgtcat ggtgcacgaa gcgacgctgg
     8821 atataaccat ggaagccaaa gccaatagtc gcggccatag ctctacacgc caggctgcga
     8881 cactagcccg tgaggcggga gtcggtaagc taatcattac ccacgtcagc tcgcgctatg
     8941 atgacaaagg ttgtcagcac ctgttacgtg aatgcaggtc aattttcccg gcgactgaac
     9001 tagcgaatga tttcaccgtg tttaacgttt aactctgctt attattaaaa acagggcgaa
     9061 acttgccctg ttatcgcaac ccgcgctaca tatatccacc cacacgggca tattgagcga
     9121 tttttgatat ttattcatct ccttacgcac tatattcaga gcaataagtt gcctcttttt
     9181 atcttcattc agcacaacct ttgcaactaa aaggagccca tgatggttac agttgtcagc
     9241 aattattgtc aattatctca aacccaactc agtcagacat ttgcagaaaa atttactggg
     9301 accgaggaat tactgcagtc tttaaaaaaa cagcgttatc cggagatgaa gaaagtattg
     9361 agttactgca taatattgcg ttaggttatg atgaatttgg aaaaaaagct gaagatattc
     9421 tttaccatat tgttagaaac ccaacaaatg agaccctatc gattatccga cttattaaaa
     9481 atgcctgttt aaaattatat aatttggcac ataccgcaac caactcccac cttaaaccaa
     9541 ctggtccgga taattcagat gttctcctat tcaaaaagct attctcccct tcgaaattaa
     9601 tgacaattat cggtgatgaa attcctctta tatctgaaaa acagtcgctt tcaaaggtgc
     9661 ttttaaatga tgagaataat gaactgagtg atggtacaaa cttctgggat aaaaatcgtc
     9721 aattaaccac agatgaaata gcttgctatc ttcagaagat cgccgctaat gcaaaaaata
     9781 ctcaagtcaa ttatcctact ggtctctacg tcccctactc caccagaact cacctggaag
     9841 acgctctcaa tgaaaatatt aagagcgatc catcatggcc gaatgaagtc cagttattcc
     9901 ccataaatac tggcggacac tggatattag tttcgctaca gaaaatagta aataaaaaaa
     9961 taataaacta caaataaaat gtgtcatatt caactcattg cgtgcactag gccatgataa
    10021 agaaaattca cttaagcgtg tcattaatag ttttaattct gaactcatgg gagaaatgtc
    10081 gaataataat ataaaagttc atttaaatga accagagata atatttttac atgccgatct
    10141 tcagcaatac ttaagccaaa gttgcggtgc gtttgtgtgc atggcagccc aggaagtgat
    10201 tgaacaaagg gaaagcaatt ctgacagcgc cccctatacg ttattaaaaa actatgctga
    10261 cagatttaaa aaatattcag cagaagagca gtgcaaaatt gattttcaac atcgactggt
    10321 aaacaggaat tgttatttag at
//
LOCUS       DAJVUN010000137        10327 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.137, whole genome shotgun sequence.
ACCESSION   DAJVUN010000137 DAJVUN010000000
VERSION     DAJVUN010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10327
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.137"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            594..791
                     /locus_tag="OQQ76_003012"
     CDS             594..791
                     /locus_tag="OQQ76_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969424.1"
                     /translation="MEITPQQLVEFTIPDGRGQQARTLPDMLSSDAGPLSYPLIYSSK
                     VMIISLFDSTVMPDKYRHNGK"
     gene            complement(741..1934)
                     /locus_tag="OQQ76_003013"
     CDS             complement(741..1934)
                     /locus_tag="OQQ76_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969425.1"
                     /translation="MSPGIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTN
                     LSLSVWAALLMLGSMLFLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLM
                     ATSAITTAVGLGILIIARIAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC
                     GRLFGPLCAAAMLAIHPLAPLGLLMAAPVLALLMLLRLPGTPPQPTPECKSVSLKRDC
                     LPYLLCAILLAAAVSMMQLGLSPALTRQFVTDTTAISQQVAWLLGLSAVAALIAQFGV
                     VRPQRLTPVALLLSAGVLMSGGLAIMLSEQLWLFYPGCAVLSFGAALATPAYQLLLND
                     KLADGAGAGWLATSHTLGYGLCALLVPLVSKTGVAIALIMAALFATILFTIVSVFIWH
                     YRTIK"
     gene            2070..3794
                     /gene="iucA"
                     /locus_tag="OQQ76_003014"
     CDS             2070..3794
                     /gene="iucA"
                     /locus_tag="OQQ76_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001314127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucA"
                     /protein_id="HCS1969426.1"
                     /translation="MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELLIPLDE
                     QKSLHFRVAYFSPTQHHRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLC
                     ETFHQRVLESHVHTQQAIDARHDWAALREKALNFGEAEQALLTGHAFHPAPKSHEPFN
                     RREAERYLPDMAPHFPLRWFSVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDN
                     QWLFPLHPWQGEYLLQQGWCQALVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIK
                     FSLSVRLTNSIRTLSVKEVKRGMRLARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDL
                     NGNIMQESLFALRENLLVDQPKSQTNVLVSLTQAAPDGGDSLLVSAVKRLSDRLGITV
                     QQAAHAWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILVQMLGDLPVGFIYRDCQGSA
                     FMPHATDWLDSIGEAQAENIFTHEQLLRYFPYYLLVNSTFAVTAALGAAGLDSESNLM
                     ARVRASLAEVRDQVTHKTCLNYVLESPYWNVKGNFFCYLNDHNENTIVDPSVIYFDFA
                     NPLQAQEV"
     gene            3795..4742
                     /gene="iucB"
                     /locus_tag="OQQ76_003015"
     CDS             3795..4742
                     /gene="iucB"
                     /locus_tag="OQQ76_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(6)-hydroxylysine O-acetyltransferase"
                     /protein_id="HCS1969427.1"
                     /translation="MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGW
                     LCDALDQIFIAAPQLSAVALPWAEWREEPQALTLFGQVKSDIIHRTAFWQLPLWLSSP
                     ANRASGEMVFDAEREIYFPQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRW
                     MNDPRVEYFWEQSGSLEVQTAYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIG
                     RHYSWQPFDRGLHLLVGEQQWRGAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQR
                     LFRHLEPAGYRTIKEFDFPHKRSRMVMADRHHFFTEVGL"
     gene            4742..6484
                     /gene="iucC"
                     /locus_tag="OQQ76_003016"
     CDS             4742..6484
                     /gene="iucC"
                     /locus_tag="OQQ76_003016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucC"
                     /protein_id="HCS1969428.1"
                     /translation="MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGA
                     QWRFIAERGIWGWLWIDAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYAT
                     LLGDLQLLKARRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY
                     TNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPL
                     PVHPWQWQQKIATDFIADFVEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL
                     TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA
                     ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLD
                     AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLV
                     KEAFPEMDSLPQEVRDATSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQ
                     LLAAVLSDYMNKHPQMAERFAIFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEN
                     LQNPLWLVTQEYES"
     gene            6481..7818
                     /gene="iucD"
                     /locus_tag="OQQ76_003017"
     CDS             6481..7818
                     /gene="iucD"
                     /locus_tag="OQQ76_003017"
                     /EC_number="1.14.13.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent L-lysine N(6)-monooxygenase"
                     /protein_id="HCS1969429.1"
                     /translation="MKKSVDFIGVGTGPFNLSIAALSHQIEELNCLFFDEHPHFSWHP
                     GMLVPDCHMQTVFLKDLVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDY
                     LRWAAEDMNNLYFSHTVENIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVK
                     HVTQSCFHASEMNLRRPDLSGKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRN
                     NFNALDEAAFADEYFTPEYISGFSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELY
                     HRFEVLRKPRNIRLLPSRSVTTLESSGPGWRLLMEHHLDQGRESLESDVVIFATGYRS
                     ALPQILPSLMPLITMHDKNTFKVRDDFTLEWSGPKENNIFAVNASMQTHGIAEPQLSL
                     MAWRSARILNRVLGRDLFDLSMPPALIQWRSGSRKKPQPEAASLTHYTANIQE"
     gene            7824..10019
                     /gene="iutA"
                     /locus_tag="OQQ76_003018"
     CDS             7824..10019
                     /gene="iutA"
                     /locus_tag="OQQ76_003018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709458.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric aerobactin receptor IutA"
                     /protein_id="HCS1969430.1"
                     /translation="MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAE
                     MAQTTWVIENAELEQQIQGGKELKDALAQLIPGLDVSSQSRTNYGMNMRGRPLVVLID
                     GVRLNSSRSDSRQLDSVDPFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMME
                     FEAGTKSGFNSSKDHDERIAGAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQ
                     TGLQHSNRLDIMGTGTLNIDESRQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPY
                     VSKGLNSDRIPGTERHLISLQYSDSDFLGQELVGQVYYRDESLRYYPFPTVNANKQAT
                     AFSSSQQDTDQYGMKLTLNSQLMDGWQITWGLDAEHERFTSNQMFFDLAQASASGGLN
                     NHKIYTTGRYPSYDITNLAAFLQSSYDINDIFTVSGGVRYQYTENRVDDFIDYTQQQK
                     IAAGKAISADAIPGGSVDYDNFLFNAGLLMHITERQQAWFNFSQGVALPDPGKYYGRG
                     IYGAAVNGHLSLTKSVNVSDSKLEGVKVDSYELGWRFTGDNLRTQIAAYYSLSNKSVE
                     RNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWSTGVNFNVLKTESKVNGQWQKYDVKE
                     SSPSKATAYINWAPEPWSLRVQSTTSFDVSDAEGNDINGYTTVDFISSWQLPVGTLSF
                     SVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRGRTFGLNYSVLF"
BASE COUNT         2532 a         2627 c         2715 g         2453 t
ORIGIN      
        1 gtgaaacaaa ggcagcttat cgttgttttt caaacgataa agtctctgct aataaaatta
       61 tggctcctca caaagaaaat atcactgaaa gagctcagca gtttaaaaga gttttagttt
      121 tacaggatac aacagaactt aattattctg gtcagaaaga aaaacaagga gttggtcaca
      181 aaaaacataa agatgaaaga aacttatttc ttcatcctca actcgtcatc agtgagtcag
      241 gtgtttgcct cggtgtttat gatgactatc agtggttcag ggatgaatta aaaaccagta
      301 aaaatacccg acaagaaatc tgcaatgatt tacttcataa aaaacatgtc agtgaaaaag
      361 aaacctggcg ttgggttgaa ggatataata aagcaacaga actggctcgc caatgccctg
      421 atacccatgt attgtcaatt tctgatcgtg aaggcgattt ttatgacctg tttgaacgcg
      481 cagagcagac tcccggaata aaagctgact ggcttgtcag aatgaaattt aataacagag
      541 caacgctgaa tattaatggt aaacgggatc ataggttgtt gcacgaaaga atcatggaga
      601 ttacaccgca gcaactggtt gaattcacta tacctgatgg gcgggggcag caagccagaa
      661 cactgcctga catgctttca tcagacgcag gtcctctctc atatcctctg atttactcca
      721 gtaaggtgat gatcatatct ttatttgata gtacggtaat gccagataaa tacagacaca
      781 atggtaaata atatagttgc aaataatgct gccataatca gcgcgattgc gacacctgtt
      841 ttcgatacca gcggcaccag caaagcgcac agtccatagc caagtgtgtg actggtagcg
      901 agccagcccg cgcctgcgcc atcagccagc ttatcattca gtagaagttg ataagcgggt
      961 gttgccagag ctgctccaaa tgacagcact gcacagcccg ggtaaaacaa ccatagctgt
     1021 tcggagagca tgatagccag accaccactc atcaacactc cggcactcag gagcagggcc
     1081 accggagtca ggcgctgcgg acggactacc ccgaactgcg cgataagcgc agctactgcg
     1141 gacagaccca acagccaggc cacctgttgg ctaatggcgg tggtatccgt gacgaactgg
     1201 cgagtaaggg caggcgaaag tccaagctgc atcatgctca ccgccgcagc cagtaatatt
     1261 gcgcaaagca gataaggcag acaatcccgc ttcagactga cgctcttgca ctccggtgtg
     1321 ggctgtggtg gtgtgccggg caaccgcagc agcatcagca gcgccagcac tggtgctgcc
     1381 atcagtagcc ccagtggcgc cagaggatga atggccagca ttgctgccgc gcacagcggc
     1441 ccgaatagcc tgccgcaact caggccggag ctgatggttg ccagagcggc catgcgattc
     1501 ccttctccag ctctctgcaa tgcccagacc tgacaggctg gcaccattgc cgacacggtc
     1561 agcccgtagg cgatccgggc gatgattaat attcccagtc ccaccgctgt tgttatggcg
     1621 ctggtagcca tcagcacgct tcccagccct agcagggtaa agcttatgcc atatcctccc
     1681 agagcccaca acaccacagg tttactgcca gtacgggaaa tttgctttcc ccaccacggg
     1741 gacgatggca gaaacagcat tgagccaagc atcagcaggg cagcccatac agacagactc
     1801 agatttgtct gtatgaccag aacagggagc acaaccagca gaccgttctg tccgataccg
     1861 agaagcccgg cactgaacgc aagtggccag caggacagtg ttttttgggg cgtatcttcg
     1921 atccctggtg acattataat gtttcaactc catgtattaa ttgtgtttat ttgtaaaatt
     1981 aatttatctg acaataacat ttattgttga taatgagaat cattatcgac ataattgtta
     2041 ttattttact gtgtgggagc tgtttgacta tgaccctgcc ctctgaaaaa ccagccacag
     2101 atgtggctgc gcagtgcttc ctgaatgcac tgattcgtga aaccacagac tggaaactga
     2161 cagaataccc gccagacgaa ttgctcatcc cgctggatga gcagaaatcg ctccatttca
     2221 gagtggctta tttctcccca acccagcatc accgctttgc atttcctgca cgtctggtca
     2281 cggcatcagg cagttatcct gtcgacttta ccactctctc ccggcttatt attgataagc
     2341 tacgccatca actgtttctg cccgttcccc tctgcgaaac tttccaccag cgcgtgctgg
     2401 aaagccatgt ccatacgcaa caggcaattg atgcccgtca tgactgggcc gctctgcgtg
     2461 aaaaagcgtt gaattttggc gaggctgagc aggcgctgct gacaggacac gctttccacc
     2521 ctgcgcctaa gtctcatgaa ccgtttaacc ggcgggaggc tgaacgctac ctgcctgata
     2581 tggcacccca cttcccactg cggtggtttt cggtggataa aacacaaatc gccggtgaaa
     2641 gtttgcatct caaccttcaa cagcggctga cgcgatttgc cgcagagaat gcgcctcagt
     2701 tactcaacga attaagtgac aaccaatggc tgttcccgtt gcacccgtgg cagggggaat
     2761 atcttttgca gcaggggtgg tgccaggcac ttgttgctaa agggctgatt aaagacttag
     2821 gtgaggccgg cacgtcgtgg ctgccgacca cctcttcccg ttccctctac tgtgccacca
     2881 gccgcgatat gatcaagttc tccctgagcg tacggctgac caactccatc cgtactctgt
     2941 ccgtgaaaga agtgaagcgt gggatgcgcc tggcacgcct ggctcaaacc gacggctggc
     3001 agatgctaca ggtccgcttc ccgactttcc gggtaatgca ggaggatggc tgggccgggc
     3061 tgctcgatct taacggcaac atcatgcagg aaagtctgtt tgccctgcgt gaaaatctgc
     3121 tggtggatca gccgaaaagc cagactaacg tactggtctc cctgactcag gccgcacctg
     3181 atggcggtga ttcgctgctg gtttcggcgg taaaacgcct gagcgatcgc ctcggtatca
     3241 ctgtgcaaca ggccgcccat gcatgggtcg atgcatactg tcagcaagtg ctaaagccgc
     3301 tgtttacggc tgaagcggat tacggcctgg tgctgctggc gcatcagcaa aatattcttg
     3361 tccagatgct tggggatctg ccggtcggat ttatttaccg tgactgtcag ggcagcgctt
     3421 ttatgcctca cgcgacagac tggctcgatt ctattggcga ggcgcaggcg gaaaatattt
     3481 tcacccatga gcagttgctg cgctatttcc cttattacct gctggttaac tccacttttg
     3541 ctgtgaccgc tgcgctgggg gctgccgggc tggacagcga atcgaatctg atggctcgtg
     3601 tacgagcatc gctggctgaa gtgcgtgatc aggtgactca taaaacctgt ctcaactacg
     3661 tgctggaaag tccgtactgg aacgtaaaag gtaacttttt ctgttatctg aacgatcata
     3721 acgagaacac cattgttgat ccttcggtga tctatttcga tttcgctaac ccgctgcagg
     3781 ctcaggaggt ctgaatgtct gaggcaaaca ttattcacag cagatatgga ctgcgctgtg
     3841 aaaaactcga caagcccctg aatcttggct ggggactgga caatagcgcg gtgttgcact
     3901 gtcccgggga gctgccgaca gggtggctgt gcgatgcgct ggatcagata tttatcgccg
     3961 caccacaact gtcagcagtg gctctcccct gggccgaatg gcgtgaggag ccacaggcgc
     4021 tgacgctttt tgggcaggta aaaagcgaca ttatccatcg tactgccttc tggcagttac
     4081 cgttatggtt gagttcaccg gcaaaccggg cctccggtga aatggttttt gatgcagagc
     4141 gtgagattta tttcccgcag cgcccacccc gtccacaggg tgaggtttac cgccgttacg
     4201 atccacgtat tcgcaggatg ctgagtttcc gcattgccga tcccgtttct gatgcagaac
     4261 gtttcacccg ctggatgaat gatccgcgcg ttgagtattt ctgggagcaa agtggctcac
     4321 tggaggtaca gaccgcctat ctggagcgcc agctcaccgg taaacatgca ttcccgctga
     4381 ttgggtgctt cgacgatcgg ccattcagct atttcgaaat ctactgggcg gcggaagacc
     4441 gcattggtcg tcactattcg tggcagccct ttgaccgtgg cctgcatctg ctggttggtg
     4501 aacagcaatg gcgcggggcc cactatgtgc aaagctggct gcgcgggctg acacattacc
     4561 tgctgctgga tgagccccgt acgcagcgca cagtactgga gccacgcacc gataaccagc
     4621 gcctgttccg ccatcttgag cctgcgggat accggacaat taaagagttc gacttcccac
     4681 ataagcgctc gcgcatggtg atggcggatc gtcatcactt cttcacggag gtcggtctgt
     4741 aatgaatcac aaggactggg attttgttaa ccgtcggctg gtggcaaaaa tgttgtctga
     4801 gatggagtat gagcaggttt tccacgcgga atctcagggc gatgaccact actgcattaa
     4861 cctgccggga gcacaatggc gcttcatcgc tgaacgtggt atctggggct ggctgtggat
     4921 tgatgcccaa acgttgcgct gcacggacga accagtactg gcgcagacgc tgctgatgca
     4981 gctaaagccg gtgctgtcaa tgagtgatgc cactgttgca gagcatatgc aggatttgta
     5041 tgccacgcta ctgggcgacc tgcaactgct gaaggcccgt cgcggactga gtgccagtga
     5101 cctgattaat cttgatgccg atcgtctgca atgcctgctg agcggtcatc ctaaattcgt
     5161 ttttaataaa ggtcgccgtg gctggggcaa agaggcgctg gaacgatatg cgccagagta
     5221 taccaacacc ttcagactgc actggctggc ggtaaaacgt gaacatatga tctggcgctg
     5281 cgataacgat ctggatattc agcagttgtt gactgccgca atggatccgc aggagtttac
     5341 acgcttcagt caggtctggc aggaaaacgg gctggatcac aactggctac cgctgccggt
     5401 acatccgtgg cagtggcagc aaaaaatcgc cacagacttc atcgctgatt ttgtcgaagg
     5461 caggatggtg tctctcggcg agtttggcga ccagtggctc gcccagcagt cgctgcgtac
     5521 cctgaccaac gccagccgcc ggggagggct ggatatcaag ctgccgctga ccatctacaa
     5581 cacctcatgc taccggggga tccctggcag atatatcgct gccggaccac tggcttcacg
     5641 ctggctgcaa caggtttttg cgaccgacgc caccctggtg caaagcggcg cagtgatcct
     5701 tggtgaaccg gcggcaggct atgtgtccca tgaaggctat gccgcgcttg cccgggctcc
     5761 ctatcgctac caggaaatgc ttggtgttat ctggcgggag aatccgtgcc gctggctgaa
     5821 accggatgaa agtcctgttc tgatggcaac actgatggag tgcgacgaaa acaatcagcc
     5881 gctggcaggc gcatatatcg accgctccgg actggacgct gaaacctggc ttacgcaatt
     5941 gttccgggtg gttgtggttc cgctgtatca cctgctttgc cgctacggtg tcgcgcttat
     6001 tgcacacgga caaaatataa cgctcgccat gaaagagggg gtaccacagc gtgttctgct
     6061 gaaagacttc cagggcgata tgcggctggt gaaagaagcg tttcccgaaa tggactcttt
     6121 gcctcaggag gtgcgtgatg ccacatcccg tctgagtgcg gactacttaa tccatgattt
     6181 gcagacgggt cacttcgtga cagtactgcg ttttatttcg ccactgatgg ttcgtcttgg
     6241 cgtacctgaa aggcgatttt atcaactgct ggcagcagtg ttgagtgatt acatgaacaa
     6301 acatccacaa atggcagagc gttttgcgat tttctcactc ttcaggccac aaatcattcg
     6361 cgtggtgctg aacccggtaa aactgacctg gccggacctg gatggcggca gtcgcatgct
     6421 gccgaattac cttgagaatc tgcaaaatcc gctgtggctg gtaactcagg aatatgaatc
     6481 atgaaaaaaa gtgtcgattt tattggtgtc gggacagggc catttaatct cagcattgct
     6541 gcattgtcac atcagatcga agaactgaac tgtctcttct ttgacgaaca tcctcatttt
     6601 tcctggcatc cgggtatgct ggtaccggat tgtcatatgc agaccgtctt tctgaaagat
     6661 ctggtcagtg cagttgcacc tacaaatccc tacagctttg ttaactatct ggtgaagcac
     6721 aaaaagttct atcgcttcct tacaagcagg ctacgtacag tatcccgtga agagttttct
     6781 gactatctcc gctgggctgc tgaagatatg aataacctgt atttcagtca taccgttgaa
     6841 aatattgatt tcgacaaaaa aagtcgattg tttctggttc agaccagtcg gggagaatat
     6901 tttgcccgca atatctgcct tggtacagga aaacaacctt atttaccacc ctgtgtgaag
     6961 catgtgacac aatcctgttt ccatgccagt gaaatgaatc ttcgtcggcc ggacctgagt
     7021 ggaaaacgga taaccgtggt tggtggagga cagagtggtg cagacctgtt ccttaatgca
     7081 ttacgcgggg aatggggaga agcggcggaa ataaactggg tctcacggcg taataatttt
     7141 aacgcactgg atgaggctgc ttttgctgat gagtatttta cacctgaata tatttcaggc
     7201 ttctccggac tgaaggaaga tattcgccat cagttactgg atgagcagaa aatgacatcg
     7261 gatggcatca ctgccgattc tttactgacc atttatcgtg agttgtacca ccgttttgaa
     7321 gttctgagaa aaccaagaaa tatccgtctg ctacccagtc gctcggtaac aactctggaa
     7381 agtagtggtc cgggctggag gttattgatg gaacatcatc tggatcaggg cagagagagc
     7441 ctggaaagtg atgtggtgat tttcgccaca ggttaccgtt ctgcattgcc acaaatactt
     7501 ccctcactga tgcccttgat caccatgcac gataagaaca cctttaaagt gcgtgatgac
     7561 ttcactctgg aatggagtgg cccgaaagaa aataacatct ttgcggtcaa cgccagcatg
     7621 caaactcatg gcatcgccga accccagctc agcctgatgg cctggcgatc tgcacgtatt
     7681 cttaatcgcg tactggggcg tgatttattc gatctcagta tgccgcccgc actgattcag
     7741 tggcgcagcg gcagccggaa aaaaccgcag ccggaggctg cttctttaac tcactataca
     7801 gcaaatattc aggaataacg atgatgcgca aaaagtatat gccccgggct cttggtccgc
     7861 tgcttcttgt cgtgctgtca ccagctgtcg cccagcaaaa cgatgataat gagatcatag
     7921 tgtctgccag ccgcagcaat cgaactgtag cggagatggc gcaaaccacc tgggttatcg
     7981 aaaatgccga actggagcag cagattcagg gcggtaaaga gctgaaagac gcactggctc
     8041 agttaatccc cggccttgat gtcagcagcc agagtcgaac caactacggt atgaacatgc
     8101 gtggccgccc gctggttgtc ctgattgacg gtgtgcgcct caactcttca cgttccgaca
     8161 gccgacaact ggactctgtc gatcctttta atatcgacca tattgaagtg atctccggcg
     8221 cgacggccct gtacggtggc gggagtaccg gagggttgat caacatcgtg accaaaaaag
     8281 gtcagccgga aaccatgatg gagtttgagg ctggcacaaa aagtggcttt aacagcagta
     8341 aagatcacga tgagcgcatt gccggtgctg tctccggcgg aaatgaccat atctccggac
     8401 gtctttccgt ggcatatcag aaatttggcg gctggtttga cggtaacggc gatgccaccc
     8461 tgcttgataa cacccagacc ggcctgcagc actccaatcg gctggacatc atgggaaccg
     8521 gtacgctgaa catcgatgaa tcccggcagc ttcaactgat aacgcagtac tataaaagtc
     8581 agggagacga caattacggg cttaatctcg ggaaaggctt ttccgccatc agcgggagca
     8641 gcacaccata cgtcagtaag gggctgaatt ctgaccgcat tcccggcact gagcggcatt
     8701 tgatcagcct gcagtactct gacagtgatt tcctgggaca ggaactggtc ggtcaggttt
     8761 actaccgcga tgagtcgttg cggtactacc cgttcccgac ggtaaatgcg aataaacagg
     8821 cgacggcttt ctcctcgtca cagcaggata ccgaccagta cggcatgaaa ctgactctga
     8881 acagccaact gatggacggc tggcaaatca cctgggggct ggatgctgag catgagcgct
     8941 ttacctccaa ccagatgttc ttcgatctgg ctcaggcaag tgcttccgga gggctgaaca
     9001 accataagat ttacaccacc gggcgctatc cgtcatatga catcaccaat ctggcggcct
     9061 tcctgcaatc cagctatgac attaatgata tttttaccgt tagcggtggc gtacgctatc
     9121 agtatactga gaacagggta gatgatttca tcgactacac gcagcaacag aagattgctg
     9181 ccgggaaggc gatatctgcc gacgccattc ctggtggttc ggtagattac gataactttc
     9241 tgttcaatgc tggtctgctg atgcacatca ccgaacgtca gcaggcatgg ttcaattttt
     9301 cccagggggt ggcattgccg gatccgggga aatattatgg tcgcggcatc tatggtgcag
     9361 cagtgaacgg ccatctttcc ctgacaaaga gcgtgaacgt cagcgacagt aagctggaag
     9421 gcgtgaaagt cgattcttat gaactgggct ggcgctttac cggtgacaac ctgcggactc
     9481 aaatcgcggc atattactcg ctttccaata agagcgtgga aaggaataaa gatctgacca
     9541 tcagtgtgaa ggacgacagg cgccgtattt acggcgtgga aggtgcagtg gactacctga
     9601 tcccggatac tgactggagt accggtgtga acttcaatgt gctgaaaacc gagtcgaaag
     9661 tgaacggtca atggcaaaaa tatgacgtga aggaatcaag tccatcgaaa gcgacagctt
     9721 acattaactg ggcgccggaa ccgtggagtc tgcgtgtaca gagcaccact tctttcgacg
     9781 taagcgatgc agagggtaac gatattaatg gttacactac cgtcgatttt atcagtagtt
     9841 ggcagcttcc ggtgggaaca ctcagcttca gcgttgagaa cctcttcgac cgtgactata
     9901 ccactgtctg gggacagcgt gcacctctgt actacagccc gggttacggc cctgcttcac
     9961 tgtacgacta caaaggccgg ggccgaacct ttggtctgaa ctactcagtg ctgttctgac
    10021 ggggatgctt ttgcaacaag ggtatgctgt aaacaacatg gtccttggtg gccatgttgt
    10081 ttacagccag tataatatac agccttaaca agatattccg tctccggaat ggactgttca
    10141 ccactgaata acattatttc tgttttatgg atctttgact gaaatttatc gcatatcctc
    10201 atttcattgt ccgtctgaaa actaacctta caagtaagcg tcgtctcagc accgtctggc
    10261 agatcctgaa attcctgaga ggatgatctg cgcgtaaggc agtatgactt tccgtgagac
    10321 agatgct
//
LOCUS       DAJVUN010000138        10248 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.138, whole genome shotgun sequence.
ACCESSION   DAJVUN010000138 DAJVUN010000000
VERSION     DAJVUN010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10248
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.138"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..209)
                     /gene="marB"
                     /locus_tag="OQQ76_003019"
     CDS             complement(<1..209)
                     /gene="marB"
                     /locus_tag="OQQ76_003019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance protein MarB"
                     /protein_id="HCS1969431.1"
                     /translation="MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEQ
                     PPFDLNHMGTGSDKSDALGVPYYNQ"
     gene            complement(241..624)
                     /gene="marA"
                     /locus_tag="OQQ76_003020"
     CDS             complement(241..624)
                     /gene="marA"
                     /locus_tag="OQQ76_003020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707445.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     MarA"
                     /protein_id="HCS1969432.1"
                     /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR
                     MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV
                     PPHKYRMTNMQGESRFLHPLNHYNS"
     gene            complement(644..1078)
                     /gene="marR"
                     /locus_tag="OQQ76_003021"
     CDS             complement(644..1078)
                     /gene="marR"
                     /locus_tag="OQQ76_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance transcriptional
                     regulator MarR"
                     /protein_id="HCS1969433.1"
                     /translation="MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFK
                     VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT
                     SGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVLP"
     gene            1290..1955
                     /gene="marC"
                     /locus_tag="OQQ76_003022"
     CDS             1290..1955
                     /gene="marC"
                     /locus_tag="OQQ76_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter MarC"
                     /protein_id="HCS1969434.1"
                     /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS
                     LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP
                     EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP
                     PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK
                     TNH"
     gene            complement(1980..3170)
                     /gene="ydeA"
                     /locus_tag="OQQ76_003023"
     CDS             complement(1980..3170)
                     /gene="ydeA"
                     /locus_tag="OQQ76_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose MFS transporter"
                     /protein_id="HCS1969435.1"
                     /translation="MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFH
                     MQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFT
                     VLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIV
                     GQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLT
                     VVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASAL
                     VSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVA
                     MALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLE
                     EQTQ"
     gene            complement(3320..4433)
                     /gene="yneK"
                     /locus_tag="OQQ76_003024"
                     /pseudo
     CDS             complement(3320..4433)
                     /gene="yneK"
                     /locus_tag="OQQ76_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707449.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein YneK"
     gene            complement(4604..5392)
                     /locus_tag="OQQ76_003025"
     CDS             complement(4604..5392)
                     /locus_tag="OQQ76_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020231439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1969436.1"
                     /translation="MDLTQLEMFNAVAEAGSITQAAAIVLRVPSNLTTRLRQLETELG
                     VDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAV
                     RIPATLAEFNHRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINHTAIDGIPVYR
                     EELMIVTPQGHAPVIRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESY
                     HGMLACVVAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTT"
     gene            5493..6881
                     /gene="sad"
                     /locus_tag="OQQ76_003026"
     CDS             5493..6881
                     /gene="sad"
                     /locus_tag="OQQ76_003026"
                     /EC_number="1.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="HCS1969437.1"
                     /translation="MTITPATHAISINPATGEQLSVLPWAGANDIENALQLAAAGFRD
                     WRETNIDYRAEKLRGIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAE
                     HGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLK
                     HAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGA
                     AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFII
                     EEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLL
                     LGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITVAKDAEHALELANDSEFG
                     LSATIFTTDETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHE
                     FCNIQTVWKDRI"
     gene            6945..7871
                     /gene="glsB"
                     /locus_tag="OQQ76_003027"
     CDS             6945..7871
                     /gene="glsB"
                     /locus_tag="OQQ76_003027"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HCS1969438.1"
                     /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA
                     ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV
                     QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS
                     EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA
                     IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI
                     AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY"
     gene            7871..8230
                     /locus_tag="OQQ76_003028"
     CDS             7871..8230
                     /locus_tag="OQQ76_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HCS1969439.1"
                     /translation="MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAAD
                     FVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQR
                     YIVAVIYHWLVVQMNQP"
     gene            8369..9787
                     /locus_tag="OQQ76_003029"
     CDS             8369..9787
                     /locus_tag="OQQ76_003029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1969440.1"
                     /translation="MHVHPISTFRLFQEGHLLRNSIAIFALTTLFYFIVAELRLVHEL
                     SLFWPLNGVMAGVFARYVWLNRLHYYAISYVAMLVYDAITTEWGLVSLVINFSNMMFI
                     VTVALLVVRDKRLGKNKYEPVSALRLFNYCLIAALLCAIVGAIGSVSIDSLDFWPLLA
                     DWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF
                     PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPEMFSARLGIA
                     TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTV
                     MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP
                     VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTC
                     LYRSKKDGRNRTSTMRYGEEVV"
     gene            10011..>10248
                     /locus_tag="OQQ76_003030"
     CDS             10011..>10248
                     /locus_tag="OQQ76_003030"
                     /EC_number="1.1.1.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="catalyzes the formation of D-tagaturonate from
                     D-altronate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase"
                     /protein_id="HCS1969441.1"
                     /translation="MKTLNRRDIPGAQYPERIIQFGEGNFLRAFVDWQIDLLNEHTDL
                     NSGVVVVRPIETSFPPSLSTQDGLYTTIIRGLNEK"
BASE COUNT         2561 a         2350 c         2645 g         2692 t
ORIGIN      
        1 tgttgattat aatagggcac gccgagcgca tccgacttat cactgccagt acccatgtga
       61 tttaaatcaa acggtggttg ttcctgcgat gggggaacaa ccacgacatt ggcacaagaa
      121 gtaacaactg gctgcgtggt ttgttccgca acgccctgcg cggaaaagag aataagcgca
      181 gctgctattg cggatgaaag tggtttcatg attgcctcag tgacgttgtc acgttatcaa
      241 ctagctattg taatgattta atggatgtaa aaagcgcgat tcgccctgca tattggtcat
      301 ccggtattta tgtggcggaa catcaaagta atttttgaag gttcgggtca gagtttgttg
      361 cgactcgaag ccatatcgtt ctgccagata gagtatcggc tcgttacttt ccttcagctt
      421 ttgcgcgatt tccgtcatct tacggctgcg gatgtattgg cctaatgaat gaccggtttc
      481 ttttttaaac atccgttgca ggtgccattt agagtaacct gaacgctctg acactttctc
      541 cagtgacagt ggcgattcca ggttgtcctc gatccagtcc aaaatgctat gaatggtaat
      601 agcgtcagta ttgcgtctgg acatcgtcat acctcttttt tgtttacggc aggactttct
      661 taagcaaatg ctcaagtgtt gccacttcgt ccgccgtcag gttttttgtt aattcttgat
      721 gcaggtcctg gccaactaat tgatggcatt gttcgcatat tgccgcgccg ctggtggtaa
      781 gttttaccag tacgccgcgc ttatcattcg ggttcggcaa cctttcaacc cagcctttac
      841 agaccaggcg atccagcata cgggtcagtg ctccaaggtc gacagacaac acttttttca
      901 gttcaaccgg agtaatacac gccgcgcagc ggatagagca gagcacctta aactgtgccg
      961 cggtaatatc cagcggagac agatactcgt taagcagacg atctttcttc tgattaacca
     1021 tatggattaa gcgacccaat ggaataattt cattgaacag atcgctggta cttttcacat
     1081 tagttgccct ggcaagtaat tagtttcagg gggtaatatt gcccaggcaa atataagtca
     1141 aataaatgaa ttgaccgatg ccacgttttg ctaaatcggt tcaagttttg gtcaatgcga
     1201 tgcaaggtta gctaaagagt gacactttat ccttgtttac cccttatact tttcgctgat
     1261 aacccagata cactggataa caaccaccaa tgttagattt gtttaaagca attggcctgg
     1321 ggctggtggt gttactgccg ttagctaacc cattaacaac tgtcgcgtta tttcttggcc
     1381 tggcaggcaa catgaacagt gccgaacgta atcgtcagtc gttgatggcc tcggtgtacg
     1441 tatttgccat catgatggtg gcgtattacg ccgggcaact ggtgatggat acatttggca
     1501 tttcgattcc cggtctgcga attgcaggcg gcttaatcgt cgcgtttatc ggttttcgga
     1561 tgctctttcc gcaacagaaa gcgattgatt caccggaggc gaaaagcaag tcggaagagc
     1621 tggaagatga acccagtgcc aatattgcct ttgtgccgct agcaatgcca agtaccgctg
     1681 gtccgggaac catagcgatg attattagct cggcgtccac agtgcgtcag agttcaacct
     1741 tcgctgattg ggtactgatg gttgcgccgc cgctgatctt tttcctggtg gcggttattt
     1801 tgtggggaag cctacgcagc tccggcgcaa ttatgcggct ggtgggcaag ggtggcattg
     1861 aagcgatctc ccgtctgatg ggattcctgc tggtatgtat gggtgtgcag tttattatta
     1921 acggcatcct ggaaatcatt aaaacgaacc attaaaaaag gcccgaatgg gcctttcaac
     1981 tattgcgtct gttcttcgag tgtcactggc cagcggcgaa atataatgat tgaccatatt
     2041 aacgcggcaa aagcaggcac cgcgcccaca taaccaatca tcgacattga ccagtgcaaa
     2101 ctcacctgat tacctaccaa cgcacccgcc ccgattccaa tattaaatat gccggagaat
     2161 agcgccatcg cgacgtcggt agcatctggt gccagcgcca gcactttaac ctgcatacca
     2221 agcccgatga tcatcatcgc gatcccccag aaaatactca gcaccccgag gtgtatttca
     2281 ctgttcgccg caggtagcag cagtgccaga cacaccagca acagcgcaat cgccgtactc
     2341 accaacgcag acgcatactg attacccagt ttaccgaaaa tcacgctgcc aataatgccc
     2401 gcaccaccga gtaataacag taatgccgtg gcaaagttgg cgctgaatcc cgcaatgttt
     2461 tgcacaaaag gctcgatata gctgtatgcc gtgtaatggg cggtgacaac caccacagtt
     2521 aacaaataaa tgctcatcaa tgccgggcgg cggaacaata gcgggaggct tttcaatgaa
     2581 ccggaatgct cactgggcag taagggaagt aacttaatca ggcacaaaag ggtgataagc
     2641 gccccaatac caatcgcgaa gaaggtcatt cgccaaccga aatactgccc cacaatgcgc
     2701 ccgagaggta aacctaagac catcgccagt gctgtaccgg tggcaattaa actcaaggcc
     2761 tgtgcccgct tcccggccgg agccatacgg atcgccagag acgccgtaat cgaccagaaa
     2821 atcgcatgtg caaaagccac accaatgcga ctgatcacca gaacggtaaa gctccacgat
     2881 aaaaacgaca gtacgtggct ggcaataaac accacaaaca ggcagatcag taatttgcgc
     2941 cgttcaacct gactggtcat taacataaaa ggcaatgaca ttagcgctac tacccatgcg
     3001 taaatggtca acatgatgcc gacctgagcg gtttgcatgt gaaaactttg cgcaatgtca
     3061 gagagcaggc caacagggac aaattcggtg gtgttgaaga tgaaggcggc gactgccagc
     3121 gtaacgaccc gtagccacgc cactttgcgg gaaacagtgt ttgttgtcat aacagattat
     3181 cgggtgagtt gcgaaaaagt gatgaaatga tcttaaaacg gttaatgatg tgaatacaat
     3241 gcatttgtga tctggatcgc gttttccgtt tctctgacgc tgattctgtt ccgcgtcaga
     3301 gagtcggtaa catcacggtt taatgacgtt cagggaggtc tggcgttttg gcggttgcgg
     3361 gtataggtgg tctgacaggg gagcgaggcc tgtttttcac caggtcttcg tgagtaactt
     3421 ttggcggcgt ttcatttttt acaaacagtt tgagggtcct gcgcgccata tgcttgataa
     3481 ttttatcatc acttaatgat gctggcatca acacgtcatt cagatcactt tcattgggat
     3541 tcataaattg gtgatagtgc aataacatat tggcgaaaaa taaaaaaagt cctgaaaatg
     3601 aggagattct tgttctgcta aaagggataa aaagcagatg cagacttcgg gtagtacatg
     3661 tttgttagaa cctaatgaat ccatcaggct ttgcaataaa tcctctttta attcgccgtc
     3721 tgttatgtcg agaatggcgg tgatcaagtt aggatcttta ttgacgaacc atctgtgaac
     3781 ctcagagtta ctccataatc gggggagtat gacaaaatta ccgcgagaga taaaattcag
     3841 gacaagcaaa tcaaactggc gtaagtaatc tgcagcggta tggtgatccg gaggcagggg
     3901 ttcaatatgt ggtgtatgcg cttttttgat ggggacgcca aggtggatca ttggaaattg
     3961 ttcaataaaa tcattcagaa acagaaagag cacacgctcg acgccggtgt gaaatacgcg
     4021 ccccatagtg acaggctttg ggttgggagc gcaaaaatat taatttctcc atcatggcga
     4081 aaattatcta aataaatagg gcttaaattt attactacct gaaattcaat attttctttg
     4141 tgtcttccat tcttgacggg ataagtgagt ttaaactgaa ccttttcatt gtatagtgtg
     4201 tcgttacccc gaaaagaagt cttctgaata tatgataagt tatcaaggtt gttaaatgtc
     4261 ttttttgtgg ctgagttggt gtttaaagac gtgcgccact cttcatcaca tattatggta
     4321 ctgagtgcat caataaaatt ctttaaaact tcttttacct gaggtgcaat attacgtacg
     4381 ggaaaatcat caggaagaga tatgtaatta ctgatgctta ctggcgtaac catatttgcc
     4441 ccatatagtc ataagtcatc ggaacatcac tatatagggc atttgagctg caagaactat
     4501 caaaaatagc tcattggtaa ccctgttttg ccgagtcagg cacatccagt agttgaataa
     4561 atgcctcaag cggacgcgtt ttcgcaccac gacgccagac cagctaggtt gttaaccaac
     4621 gccattgctc agctaacggc cacgcttcaa cctggtgatg ccccggcata ctttccagca
     4681 tagagcgtgg aataagcgca atgcctgctc ctgcgaccac acaggccaac atcccgtgat
     4741 acgactccat ctcgtgaata gttcccggag cggcaccgtc agcatgaaac cagctctcga
     4801 agtggcgacg atacgaacaa ttggcgcgga aggcataaat gttactgccg ttaacctgac
     4861 tggcgcggat tactggcgca tgaccttgtg gcgtgacgat catcagctcc tcgcggtata
     4921 ccggtatccc gtcaatggca gtatggttaa tgggcccatc aataaatgcc gcattcagtt
     4981 ttccctccag cactccttcc agcatagtgc cggaagggcc ggtggaaagt gaaaactgaa
     5041 ttttgggata acgatggttg aattccgcca gcgtggccgg aatgcgcact gctgcggtac
     5101 tttccagcga accaagagaa aataaacctt gcggctcatc gccagcgaca acgctccgcg
     5161 cttcatccac taacgcgaga atttgttggc tatagcgtaa aaagttatgc ccggcaggag
     5221 agagacgtaa acgctgattc tcgcgaataa acagatctac ccccagttct gtttccagct
     5281 ggcgtagacg ggtagtgaga ttcgacggca cgcgaagcac tattgctgct gcctgggtta
     5341 tgctgccagc ttcggcaacc gcgttgaaca tctccagttg ggtcagatcc ataatattct
     5401 cgattcgtga ataagtggct taatattatt cattttaaag caagagtaaa tctgcgtatc
     5461 ttcataccat gactcataaa ggagataccc cgatgaccat tactccggca actcatgcaa
     5521 tttcgataaa tcctgccacg ggtgaacaac tttctgtgct gccgtgggct ggcgctaacg
     5581 atatcgaaaa cgcacttcag ctggcggcag caggctttcg cgactggcgc gagacaaata
     5641 tagattatcg tgctgaaaaa ctgcgtggta tcggtaaggc tctgcgcgcc cgtagcgaag
     5701 aaatggcgca aatgatcacc cgtgaaatgg gcaaaccaat caatcaggcg cgcgctgaag
     5761 tggcgaaatc ggcgaatttg tgtgactggt atgcagaaca tggtccggca atgctgaagg
     5821 cggaacctac gctggtggaa aatcagcagg cagttattga gtatcgaccg ttggggacga
     5881 ttctggcgat tatgccgtgg aactttccgt tatggcaggt gatgcgtggc gcggttccca
     5941 tcattcttgc aggtaacggc tacttactta aacatgcgcc gaatgtgatg ggctgtgctc
     6001 agctcattgc ccaggtgttt aaagatgcgg gaatcccgca aggcgtatat ggctggctga
     6061 atgccgacaa cgacggtgtc agtcaaatga ttaaagattc gcgcattgct gctgtcacgg
     6121 tgaccggaag tgttcgtgcg ggagcggcta ttggcgcaca ggctggagcg gcactgaaaa
     6181 aatgcgtact ggaactgggc ggttcggatc catttattgt gcttaacgat gccgatctgg
     6241 aactggcggt taaagcggcg gtagccggac gttatcagaa taccggacag gtttgtgcag
     6301 cggcaaaacg ctttattatc gaagagggaa ttgcttctgc atttaccgaa cgttttgtgg
     6361 cagctgcggc agccttgaaa atgggcgatc cccgtgatga agagaacgct ctcggaccaa
     6421 tggctcgttt tgatttacgt gatgagctgc atcatcaggt ggagaaaacc ctggcgcagg
     6481 gtgcgcgttt gttactgggc ggggaaaaga tggctggggc aggtaactac tatccgccaa
     6541 cggttctggc gaatgttacc ccagaaatga ccgcgtttcg ggaagaaatg tttggccctg
     6601 ttgcggcaat caccgttgcg aaagatgcag aacatgcgct ggaactggct aatgatagtg
     6661 agttcggcct ttcagcgacc atttttacca ccgacgaaac acaggccaga cagatggcgg
     6721 cacgtctgga atgcggtggg gtgtttatca atggttattg tgccagcgac gcgcgagtgg
     6781 cctttggtgg cgtgaaaaag agtggctttg gtcgtgagct ttcccatttc ggcttacacg
     6841 aattctgtaa tatccagacg gtgtggaaag accggatctg acgcgacata ttcagctctg
     6901 atatactcgc aggtcttttc agacctgcgg tccaggagta gaaagtggca gtcgccatgg
     6961 ataatgcaat tttagaaaac atcttgcggc aagtgcggcc gctcattggt cagggtaaag
     7021 tcgcggatta tattccggcg ctggctacag tagacggttc ccgattgggc attgctatct
     7081 gtaccgttga cggacagctt tttcaggccg gagacgcgca agaacgtttt tccattcagt
     7141 ctatttccaa agtgctgagt ctcgttgtcg ccatgcgtca ttactccgaa gaggaaatct
     7201 ggcaacgcgt cggcaaagat ccgtctggat caccgttcaa ttctttagtg caactggaaa
     7261 tggagcaggg tattccgcgt aatccgttta ttaatgctgg tgcgctggtg gtctgcgata
     7321 tgttgcaagg gcgattaagc gcaccacggc aacgtatgct ggaagtcgtg cgcggcttaa
     7381 gcggtgtgtc tgatatttca tacgatacgg tggtagcgcg ttccgaattt gaacattccg
     7441 cgcgaaatgc ggctatcgcc tggctgatga agtcgtttgg caatttccat catgacgtga
     7501 caaccgttct gcaaaactac tttcattact gcgctctgaa aatgagctgt gtagagctgg
     7561 cccggacgtt tgtctttctg gctaatcagg ggaaagctat tcatattgat gaacctgtgg
     7621 tgacgccaat gcaggcgcgg caaattaacg cgctgatggc gaccagtggt atgtaccaga
     7681 acgcggggga gtttgcctgg cgggtggggc taccggcgaa atctggcgtt ggtggcggta
     7741 ttgtggcgat tgttccgcat gaaatggcca tcgctgtctg gagtccggaa ctggatgatg
     7801 caggtaactc gcttgcgggt atcgccgtcc ttgaacaatt gacgaaacag ttagggcgtt
     7861 cggtttatta atgcagtctc tcgatccact cttcgcgcgt ttatcccgtt caaaatttcg
     7921 ctctcgcttt cgtctgggca tgaaagagcg tcagtattgc ctggagaaag gcgcgccagt
     7981 catcgaacaa catgcggcgg attttgtcgc taaacgtctt gctccggcat taccggctaa
     8041 tgacggtaag caaacaccca tgcgcgggca tccggtgttt atcgctcagc acgccaccgc
     8101 gacctgctgt cgcggttgtc tggctaagtg gcataacatt ccgcagggtg tttcgttaag
     8161 cgaagaacaa caacgttata tcgtggcggt aatctatcac tggctggttg tacagatgaa
     8221 tcagccatga gaattgcgga aaacgataaa atagcattcc cagggtacct ttatttgccg
     8281 ccgctgttag cgaacatgct atcctttatg agaatttact tattacgttg agataattgc
     8341 cacccgcaat tgtatggaca gataattaat gcatgtacac cccatttcaa ctttccgttt
     8401 gttccaggaa ggtcatctgc tacgtaatag catcgctatt tttgcgctaa ccacgctgtt
     8461 ctattttatt gttgcagagt tacggctggt tcacgaactt tctcttttct ggccgctgaa
     8521 tggcgtaatg gcgggggtgt ttgcccgcta tgtctggctt aatcgactgc attactatgc
     8581 gatcagttat gtggcgatgc tggtttatga tgccataacc accgaatggg gactggtttc
     8641 actggttatc aatttctcca atatgatgtt tattgttacc gtcgccttac tggtcgtgcg
     8701 ggataagcgt ctggggaaaa ataagtatga gccagtaagt gccttacggc tatttaatta
     8761 ctgtctgatt gccgcattat tatgcgctat tgtcggggcg attggttcgg tcagtattga
     8821 tagtctggat ttctggcctt tgcttgcgga ctggttcagt gagcaattct caacgggcgt
     8881 gttgatcgtg ccttgtatgc tgacgttggc tattcctgga gtgctgccgc gctttaaagc
     8941 agaacagatg atgcccgcca tcgcgcttat tgtgtcggtt attgcctcgg tagtcattgg
     9001 cggagcgggg agtctggcgt tcccgctgcc tgcattaatc tggtgtgcag tgcgctatac
     9061 gccgcaggta acatgtctgt tgacctttgt caccggtgcg gtggaaatcg tactggtggc
     9121 aaattcggtg attgatatct cggtcggttc gccgttctcc attccggaaa tgttctccgc
     9181 acgtctcggt attgccacga tggcgatatg cccaattatg gtttctttta gcgtggcagc
     9241 gatcaattcg ctaatgaagc aagttgcgct gcgagccgac tttgattttc tgactcaggt
     9301 ttactcacgg tccggtcttt atgaggcgct gaaaagtcca tcgctgaaac agacacaaca
     9361 tctgacggtc atgctgcttg atatcgacta tttcaaaagc attaacgata actatggaca
     9421 tgaatgtggc gataaagtgt taagcgtgtt tgcccggcat attcagaaga ttgtcggtga
     9481 taaggggctg gtggcgcgca tgggcggcga agaatttgct gttgcagtgc cgtcggtgaa
     9541 tcctgtcgat ggtctgctaa tggcggaaaa aatccgtaaa ggcgttgaac tgcaaccatt
     9601 cacctggcaa caaaaaacgc tttatctcac ggtaagtatt ggcgtcggta gtggtcgcgc
     9661 atcgtaccga acgctgaccg atgattttaa taaattgatg gtcgaagccg atacgtgtct
     9721 gtatcgctcg aagaaagatg ggcgcaaccg taccagcact atgcgttacg gtgaggaagt
     9781 tgtctgacat ctttattcat tccgcgcgat ttgaatgcaa tgtgttctac cactttatga
     9841 tccaggaaaa ggcgtatttc ctcgattaaa ccatgatccg cgccacacgt ttctcataaa
     9901 actgctcatt aatcatcagg agttgatcaa aacaggggtt cggcgtatta aactttgtta
     9961 acctgtcata ccaaaaacgg gttgtgtgac taatcagaag ggaacccatt gtgaaaacac
    10021 taaatcgtcg cgatattccc ggtgcacagt atccagaacg tatcattcag tttggtgaag
    10081 gtaacttcct gcgcgccttt gttgactggc aaatcgatct cctgaatgag cacaccgatc
    10141 tgaattctgg cgtggtcgtt gttcgtccga ttgaaacttc attcccgccg tcactgagca
    10201 cgcaggatgg tctgtacacc accattatcc gtggcctgaa tgagaagg
//
LOCUS       DAJVUN010000139        10223 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.139, whole genome shotgun sequence.
ACCESSION   DAJVUN010000139 DAJVUN010000000
VERSION     DAJVUN010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10223
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.139"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            250..2709
                     /locus_tag="OQQ76_003031"
                     /pseudo
     CDS             250..2709
                     /locus_tag="OQQ76_003031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001578540.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
     gene            2766..3313
                     /locus_tag="OQQ76_003032"
                     /pseudo
     CDS             2766..3313
                     /locus_tag="OQQ76_003032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001375933.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
     gene            complement(3655..4605)
                     /gene="cbl"
                     /locus_tag="OQQ76_003033"
     CDS             complement(3655..4605)
                     /gene="cbl"
                     /locus_tag="OQQ76_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator Cbl"
                     /protein_id="HCS1969442.1"
                     /translation="MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDEL
                     GIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHT
                     QARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVA
                     FPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLA
                     DIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKR
                     GQLQRNYVWRFLELCNAGLSVEDIKRQVMENSEEEIDYQI"
     gene            complement(4707..5666)
                     /gene="nac"
                     /locus_tag="OQQ76_003034"
     CDS             complement(4707..5666)
                     /gene="nac"
                     /locus_tag="OQQ76_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen assimilation transcriptional regulator
                     NAC"
                     /protein_id="HCS1969443.1"
                     /translation="MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELN
                     QQLLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTA
                     ASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQA
                     LLKEDLFLVGTQDCPGQSVDVNAIAKMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGE
                     IESIATLTAAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANL
                     SPQAQAQAQAQAQAQAQAQAVKELLMSVISSPVMEKRQWQLVS"
     gene            5993..6068
                     /locus_tag="OQQ76_003035"
     tRNA            5993..6068
                     /locus_tag="OQQ76_003035"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6026..6028,aa:Asn,seq:gtt)
     gene            complement(6124..7059)
                     /gene="ldtA"
                     /locus_tag="OQQ76_003036"
     CDS             complement(6124..7059)
                     /gene="ldtA"
                     /locus_tag="OQQ76_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HCS1969444.1"
                     /translation="MMRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVP
                     DHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVN
                     VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYA
                     KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY
                     LFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLR
                     AFISGQEVDVNRANAALQRRSGMPVQISSGSRQMF"
     gene            complement(7121..8206)
                     /gene="cobT"
                     /locus_tag="OQQ76_003037"
     CDS             complement(7121..8206)
                     /gene="cobT"
                     /locus_tag="OQQ76_003037"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HCS1969445.1"
                     /translation="MQTLADLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALAI
                     QLAGMPGLNGIPHVGKKAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVL
                     AAQAGANVHVVDVGIDSAEPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYT
                     RELAKNGVTLFGVGELGMANTTPAAAAAIVSTITGRDPEEVVGIGANLPTDKLANKID
                     VVRRAITLNQPNPQDGVDVLAKVGGFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALA
                     ACQMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAA
                     CAIYNNMGELAASNIVLPGNTTSDLNS"
     gene            complement(8218..8961)
                     /gene="cobS"
                     /locus_tag="OQQ76_003038"
     CDS             complement(8218..8961)
                     /gene="cobS"
                     /locus_tag="OQQ76_003038"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HCS1969446.1"
                     /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL
                     GAISGLVFMVLQAWCGVPLAALFSVLVLALMTGGFHLDGLADTCDGVFSARSRDRMLE
                     IIRDSRLGTHGGLALIFVVLAKILVLSELALRGEPILASLAAACAVSRGTAALLMYRH
                     RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL
                     LKRTLGGQTGDTLGAAIELGELVFLLALL"
     gene            complement(8958..9503)
                     /gene="cobU"
                     /locus_tag="OQQ76_003039"
     CDS             complement(8958..9503)
                     /gene="cobU"
                     /locus_tag="OQQ76_003039"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HCS1969447.1"
                     /translation="MMILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARI
                     EHHRQGRPEHWRTVERWQHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDE
                     WDYQAMEQAINAEIQSLIAACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQ
                     QLAAAANEVWLVVSGIGVKIK"
BASE COUNT         2801 a         2624 c         2420 g         2378 t
ORIGIN      
        1 ataagaacct gaatcagccc ggagtcattc ccgggtcagt acatcatcac ctgcaattaa
       61 tccccgagtc agtacttcgc ggcctgacgc gatcacgcta ctcagtactt cagagcccgc
      121 ctccggtacc tgcctggcga tcgcctctgt gcaacaaaat aaatcaaccg ttatcaaacc
      181 acgagcgttc gtatgcgccg ccgatgacgc gcgcctgaaa aatgcgtcaa tatgagttcc
      241 ccggaagctt acgaaacccg ttatgaatat gaccgcttcg ggcaaatgac ggcggttcac
      301 cgtgaggaaa gcatcagcct ttaccgcagt tacgacaacc gtggccagtt aatctcggtg
      361 aaagatacgc agggccgtga aacgcagtat gagtacaacg ccgcaggcga cccgaccgcc
      421 atcattgccc cggacggcaa ccggagtgag acacagtacg atgcgtgggg aaaggccgtc
      481 agcaccgcac agggtgggct gacgcgcagc atggaatacg atgcagcggg acgtgtcatc
      541 agcctgacca acgagaacgg cagccataca gaatttagct gggatgtgct tgacctcctg
      601 atacagcagc gcggctttga cgggcggacg cagcgttacc gttatgacct gaccgggaaa
      661 ctcacgcaga gcgaggatga ggggcttatc accctctggc actacgatgc atcggaccgt
      721 atcacacacc gcacggtgaa cggcgaaccg gcagagcagt ggcggtataa cgaccacggc
      781 tggctgacag aaatcagcca tctcagcgaa ggccaccggg tggcggtgca ttacggttat
      841 aaccgtaagg gacgtctcac aggcgagcgc cagacggtac atcacccgga gacgggggaa
      901 ctgctctggc agcatgagac gcaacacact tacaacgagc tggggctggc aaaccgcttt
      961 caggcagaca gcctgccacc ggtggagtgg ctaacgtatg gcagcggtta cctggcggga
     1021 atgaaactgg gcgacacgcc gctggtggag tacacacggg atagactgca ccgggaaacg
     1081 gtgcgcagct tcggcaataa tgcatatgaa ctgaccagca cttacacccc cgcaggccgg
     1141 ttacagagtc agcacctgaa cagcctggtg tatgaccgtg actatggctg gaatgacaat
     1201 ggcgacctgg tgcgcatcag cggcccgtgg cagtcgcggg aatacggcta cagtgccacg
     1261 ggcaggctgg agagtgtgcg cacccttgca tcagacctgg atatccgcat cccgtatgcc
     1321 tccgacccgg cgggaaaccg cctgccggac ccggagctgc acccggacag tacactcacg
     1381 gcgtggccgg ataaccgaat caccgaagac gcgtactacc tgtaccgcta tgacaggtat
     1441 ggcaggctga cggagaagac ggaccgcatc ccgacgggtg tgatacggac ggacgacgag
     1501 cggacccacc actaccacta cgacagccag caccggctgg tgttttatac gcggatacag
     1561 catgaggagc cactggtcga gagccgctat ctctacgacc cgctgggccg ccggacgggg
     1621 aaacgggtgt ggcgttgcga gcgtgacctg acgggatgga tgtcgctgtc gcgtaaaccg
     1681 gaggtgacgt ggtacggctg ggacagcgac cggctgacga cggtacagac cgataccaag
     1741 cgtatccaga cggtatacca gccggggagc ttcacgccgc tcatccgtat cgaaacagag
     1801 aatggtgagc tgcagaaagc gcagcgccgc agcctggcgg agaagttgca gcaggaagga
     1861 agcgaggacg gccacggtgt ggtgttcccg gcagaacttg tgaggatgct ggacaggctg
     1921 gaggggaaaa tccgggcaga ccgcgtgagc agtgaaagcc gccagtggct ggcacagtgc
     1981 gggctgacgg tggagcggct ggcggcacag atagagccgg tttatttacc tgagcgaaaa
     2041 attcatcttt atcactgtga ccaccggggg ctgccgctgg cgctcatcag taccgaagga
     2101 gcaacggaat ggcgtgggga gtatgacgag tgggggaatc agcttaatga ggagaacccg
     2161 catcatctgt tccagccata ccgcctgccg gggcagcagt acgatgatga atcggggctg
     2221 tgctataatc gttatcgtta ctacgagccg ttacagggga ggtatattac acaggacccg
     2281 attgggttaa atggggggtg gaatttatat aaatatccgc tgaatccaat aaattatgca
     2341 gagaaagttt ggaataatcc taatatcatt acaattggaa cacatggtga tcctcaatca
     2401 gtatatgatg aaaattataa taagatagat gtcaagacat tagctaatga ggttcgaaat
     2461 catcctaaat ttaaacatgg aatgtcagta agactgttat cctgtaatac aggaaaagga
     2521 aataactctt atgcacagca attggcagat gaactaggtg tgagagtcta tgatcctgac
     2581 caatatgact ggtactattc aaatggtaag gtagagcctt ggggaggatt ctatgatgca
     2641 aacaatcaat tgcaaatgga cacgaatcag cctggaaatg agtttacatt caagcgaagg
     2701 aaaccatagg tatgaggtat tttctcttta tatttataac aatccccctt atctctggag
     2761 gtcatatgag taatgatagc gaaaagataa tatcaacata ttcgctcaat tttttatcac
     2821 cagatgatgt gaggaaagaa gaacttaagg catcacaagg tgatagtgat gctgcattta
     2881 aattatacaa atattacctt ttttgcgagc caaaatcata cagaaaacag cacgaatggt
     2941 taataatatc ggcaaataat ggaaatgcta tagctcaata taacttatca agagaacttg
     3001 agtcagaagg aaaagtagat gaatcaatac aatggctgaa gaaatcagcg gaacatggta
     3061 ataattacgc acaatatcag atgtcaaaat atttattaaa ataggtgata ttagaggatc
     3121 ggaatattat ctaaacttat ctgcggataa cggatgtgta tttgcaataa aagatattat
     3181 caaaaatatg atggatagtg gaaagtacga tgacgccctc atttgggttg aaaaattgaa
     3241 aaaattgtat cctgacacaa ataccgaact ttacatacaa aaaataacgc agaaaaaaaa
     3301 gcaatccaaa taataattat atataattac tcgcacagag ttacagtatt gcaagaaata
     3361 tatctagcat ataaagtcgc cgccagtaaa gataaagtac tgtgtaatcc ttcctcccat
     3421 ataggggtaa aaacttagca tccagtgccc tcgacttaat ttttagtatt ttctctgtga
     3481 agtgacactt cgtaggattc agttcatgtt taccagaaaa aaggtggtca atctggtggc
     3541 cttgacaatc tcgatttttt gttttagctt tccaatcagc cagttaatgg ctacggcgat
     3601 cccagtcaga ggagccaaat ttctgaaaag cccgctttta tagcgggctt tttgctatat
     3661 ctgataatca atttcctctt cactgttttc catcacctgc cgcttgatat cctcaactga
     3721 cagtcctgca ttacaaagtt ccagaaagcg ccagacatag ttacgctgaa gttgtcctcg
     3781 cttcagtccc aaccagacag tattagcatc gaaaagatgc cgcgtatcca gacggattaa
     3841 attctcttcc tcttgttcgc cgctggattg ttcggcaact aatccgatcc caagcccaag
     3901 agcaacatag gttttaatga catcagaatc ctgcgcactt aatacaatat ctgccagcaa
     3961 acctttgcgg gcaaatgcgt catcaatacg tgagcgcccc gtaatcccct gtcggtaagt
     4021 gattaacggc cacttcgcta ttgattccag cgtcaatggt gtaatttgcg ttaagggatg
     4081 atcgagtgga acaagcaaac tatggtgcca acgaaaccac gggaaggcga cgagctgcgg
     4141 gtcattactc aaacgctcgc tggcgatacc aatatcagct tcgccatttt gcaacaacgt
     4201 cgcaatttcc tgtggcgtcc cttggattag ctcgagccga acctccggga aaagttcgcg
     4261 aaaagcttta atgacctctg gcaagctata acgtgcctga gtatgcgtcg ttgcaatagt
     4321 gagaacgcca gacgtatcgt tggtaaacag gtctgcaagc cgacgaacat tactggcttc
     4381 attcagaata cgttctgcaa tgaccagtaa tgctttgccc ggttcagtca tgcccagcag
     4441 ccgcttacct cgtcgaacaa atatttcgat gccaagttca tcctccagtt cccgaatatg
     4501 acggctgacg ccggactgtg aggtaaaaag catattcgca acctctgtca ggttgtaatc
     4561 ctgacgtgca gcctcgcgga ttatctttag ttgttggaaa ttcacggtaa actccgggca
     4621 gttcagattt cccgttattg ttaaagtcta atgcccggca taacaaataa taaaaacccg
     4681 catcttattc catcccgata taacgcttag ctcaccaatt gccactgcct tttttccatc
     4741 actggggaac taatcactga cattaacaac tctttcactg cctgtgcctg tgcctgtgcc
     4801 tgtgcctgtg cctgtgcctg tgcctgtgcc tgtggcgata agttcgctct ggcgggtaaa
     4861 tttaatgaca aagagagact catggaagga gtggtaatgc gtgacatcca cccatttact
     4921 gcgccacata acgaacgcgc ggccgattcg ggtaatactg caacgcccat gccgcttgca
     4981 atcgctgcgg taagcgtggc aatagactca atttcaccaa tgacttttgc tgtgagtcgc
     5041 cgtaaggaaa aagcctcatc aacacgaagt ctaatagcac tgtaatcact ggggagaaag
     5101 aggttcattt tcgcaatagc attcacatca acgctttgcc ccgggcaatc ttgagttcct
     5161 accagaaaaa gatcttcttt cagcaaagcc tgactggata caccagccac aggggaatgc
     5221 tcataaatca ccgccatatc gagttggtga tttatcaatt tttcgttaag cactgcacca
     5281 ctattttcat gaagatagat aacgatctcc ggaaattcag cgcgaaccgc ctgtaataag
     5341 ggcatggtga tggatgacgc agcggttcct ggtgcaaagc caatcgagac ttgccccgat
     5401 aatgcctgac caacgttatg caccgccagt tgggcctgtt cacactgacg taaaatggcc
     5461 cgcgcatggg tatagagaat ttttccggcg tctgttggcg taacgccccg ctttgtacgg
     5521 atcaaaagtt gttgatttaa ctcaccttcc agtgtggcaa cctgctggct gagcgctggt
     5581 tgtgcgatat gcaatacttc agcagcctgg gtcaggctac caatatctac aatttttacg
     5641 aagtatttca ggcgtctgaa gttcatgttg cctccggttt ttaagaatcg gcccaagtgc
     5701 cgccattact tacaaccaga ttgcaagatg cttgccagtt ttattttggc gttgatgtac
     5761 aagctaacca actgtcaaat aagagattat gatagattcg tcatttgctc ctttaatcag
     5821 ctgtcgcgtt cccctgccct ataaaaggag ggtatgcacc acgatagttc attacccaat
     5881 aagattgaaa gctcaccact ttgttgaaat tgacagcaaa caaaccaaaa aatgcatttc
     5941 accctttgac atcaccatgc actgccatta atatgcgccc cgttcacacg attcctctgt
     6001 agttcagtcg gtagaacggc ggactgttaa tccgtatgtc actggttcga gtccagtcag
     6061 aggagccaaa ttcaaaaaag cctgctttct agcaggcttt ttgctttcta attaccaacg
     6121 ctcttaaaac atctgtcttg aaccagaact aatttgcaca ggcattcccg atcgacgttg
     6181 caacgcagca tttgcgcgat ttacatcaac ttcttgcccg ctgataaacg cccgcaaaga
     6241 tggggttacc ggcaatggca cttttcggtc agactcatat tctgcacgat tgcgcgacaa
     6301 cggctcatga acttccagcc agttcgagcc atctggttca gtggtgtatt ttactggctg
     6361 gtcgataatt tgcacacgcg tcccaacagg aacattatca aacagatatt tgatatcgtc
     6421 attgcgcaga cgaatacagc cctgacttac ccggagccca ataccaaaat tggcattggt
     6481 accatggatg gcatacaacc tgccaatata aatcgcgtac agccccatgg gattatcggg
     6541 gcccgcagga acaaatgcgg gcaaactctc ccctcgtttc gcatattcgc gccgagtgtt
     6601 cggcgttggc gtccaggttg gagcttcttg tttacgttca acggtagtca cccagttacg
     6661 cggggtttct cgcccagcct ggccgatacc aataggaaag acttccacag tattactgtc
     6721 tggtgggtag taataaagac gcatctcagc gacgttaacc acaatccctt tacgaacagt
     6781 ggcgggcaaa atcagttgct gcggaatggt gagttgcgag ccagacttcg gcaaaaaaac
     6841 atcagcgccc gggttcgctt ccagcatgtt acttaaccct tgcccgtatt gtgcggcaaa
     6901 agtctccagc ggctgggtat tgtgatcagg aacagttaca gtaaacgact gccccactaa
     6961 acggctaccc tctggaggta atggataagt taccgccagg ctagtatggc tggcaaaaag
     7021 cagagcaaat gagcaaaaaa tatttacacg acgcatcatg tccctttcct aagtcgcgaa
     7081 agctatccgt taagtatagc ttttatcaga cttttcgttt ttaactgttc aaatcagaag
     7141 tcgtattccc cggtagaaca atattactgg cagcaagttc gcccatgttg ttatatatcg
     7201 cacaggcagc ttcgatgatg ggcatcgcca gagctgcgcc actcccctca cctaaacgca
     7261 tctccatatt gagataaggc tccagcccca aatgcgacag cgcaatacgc gccccttttt
     7321 ctgccgacag gtgagaagga atgagatacg gtttgattgc aggagacatc tggcaggctg
     7381 cgagcgcggc agcataagaa agaaatccat ccagcaacac gggtaaaccg caggaagcag
     7441 cgcctaacat cacgccagcc attccgacca aatcaaatcc acccactttt gccaggacat
     7501 caacgccatc ctgcggattt ggttgattca acgtaatcgc ccggcgcaca acatcaattt
     7561 tattagccag tttatctgtc ggcaggtttg cgccaatccc aaccacttct tcaggatccc
     7621 ggccagtgat tgtgctgact attgccgctg ccgctgccgg tgtcgtgttt gccatcccca
     7681 gttcacctac accaaacagc gtgacaccgt tttttgccag ctcccgcgta taacatatga
     7741 cgtccaaaag caacttttca gcctgacggc gactcattgc cggagctgaa gcaatattgc
     7801 cgctacctcg tgcgacacgc atgttgataa gcccggggat aggctcagca ctatcaatac
     7861 caacatcaac tacgtggacg ttagcgcccg cttgtgctgc cagcacacac acgccggttg
     7921 ttccgcgggt catattttca gcctgaatgg ctgtcacttc ttttggggaa atagcgaccc
     7981 cttcctccca gacgccgtga tcggcacaca taaccagtac cgcttttttg cccacatgcg
     8041 gtatgccatt caaccccggc attcccgcca gttgtatggc aagcgcctcc agccttccca
     8101 ggctaccaac aggtttgagt aacccgtcaa tatgccgttg tgcacgcgac atagcggcag
     8161 gatcgatagc agggatcgta ttcagtaaat cggcaagtgt ttgcatgtca cgtctcttta
     8221 tagcagtgcc agcaggaaga ccagttcacc aagctctata gcagctccca gcgtatcgcc
     8281 ggtttgcccg cccagcgtac gtttgagaag ctgaccgagg atgaaaatcg ccaccatcgt
     8341 taccaccata gcagccacac catgcatacc cggcaataat acggcagcaa aaatagcggc
     8401 taagccgagt gtgacgcagg tttgtcgccc atcaattttg ccaatgaaca cattgccaag
     8461 cccttcttcc cgcgcataac gatgacgata catcaataat gcggcagtcc cgcggctgac
     8521 cgcacatgct gccgccagcg atgcaaggat cggttcgcca cgcagagcca actcgcttaa
     8581 taccagaatc tttgccagta caacaaaaat caatgccaga ccgccatggg tgcctaaacg
     8641 gctatcacgt atgatttcca acatgcgatc gcggctacgt gcagaaaata cgccatcaca
     8701 ggtatcggcg aggccgtcca ggtggaatcc cccggtcatc agcgccagca caagtacgct
     8761 aaacagtgcc gccagtggta cgccacacca tgcctgcagc accatgaaga ccagcccgct
     8821 aatcgcgcca agcaataatc caattaaagg aaaagtaata ataccgcgag aataatgctc
     8881 gaaatccagt ccctgggacc agcgacgcgg tacaggcaga cgcgtaataa atgagagcat
     8941 cgcccaaaat aatttactca tttgattttt actccaatac ccgaaaccac cagccatact
     9001 tcatttgccg cagcggccaa ctgctgattt acccgcccgg caatatcacg aaaatgtcgt
     9061 gccagacgac tctccggcac aatccccatt cccacttcgt tagtcactaa tacaaccttt
     9121 gcggggcaac gttggcaggc agcaatcaac gactgaatct cagcattaat cgcctgttcc
     9181 atcgcctgat aatcccattc atcagggtct ttatcgccgc cataatcaaa caacagatta
     9241 gtcaccattg tggtaacgca ttccagcaac acaacctcat tcgggttaat gtctgcatga
     9301 attaattcat caagatgttg ccagcgctcc actgtgcgcc agtgctccgg gcggccttgc
     9361 cgatgatgtt ctatccgtgc agccatctca tcatcaagga tttgcgaggt agcgatatac
     9421 agaacctgtg aagagtcccc aataagcgcc tctgcgtggc gactcttccc gctccgtgcg
     9481 ccccccgtca ccaaaatcat cataccgact cctgattcaa atgtatgatg gtattcattg
     9541 aacagaacaa tggatccccc accgttgctg accgcaaaac atttacgcga ttaatactgc
     9601 gcgtaatata attaaaaatc cagcattctc aatccattac gaaataagat ggcattacgg
     9661 aatagccaga ctttctcgtg ttaacgtccg acaaaatgtg tcattgacag cggtttctgt
     9721 ggattgacac atttcattca gataatgaat taatgctact gccggaccaa ccagcaaacg
     9781 ggcattgtgt tctgaaatcc aggctattga ttcaacgtca gcgacagatc tgcgctgtaa
     9841 aagaacttgt aaaacaacgc aatagaatta tccggaatgg tggcgactat gcactagaac
     9901 accacaattt cgctctctcg gtaaggcact gtcacagcat tcaacagaat gtgacttgcc
     9961 agatttatta gcgccaccag atgtttaacc gggtaaccac gacccagtcg gggatatatt
    10021 ccatcttctc gctgacatca tcaagaataa aaaggtttat cacactcaga gcaacgttct
    10081 tcagcaggcg ggataattct tcaacattta aaagatgtgt tattaaaggc atacaaactg
    10141 gacgtattgt attttctttt ggtggttgac ctaaggtagc agtttatcct gatgcgctga
    10201 gatttctgta atatctacgt caa
//
LOCUS       DAJVUN010000140        10166 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.140, whole genome shotgun sequence.
ACCESSION   DAJVUN010000140 DAJVUN010000000
VERSION     DAJVUN010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10166
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.140"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            199..1103
                     /locus_tag="OQQ76_003040"
                     /pseudo
     CDS             199..1103
                     /locus_tag="OQQ76_003040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311354.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; frameshifted;
                     incomplete; partial in the middle of a contig; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
     gene            complement(1199..2242)
                     /locus_tag="OQQ76_003041"
     CDS             complement(1199..2242)
                     /locus_tag="OQQ76_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HCS1969448.1"
                     /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWLVTCNNQNFCVAR
                     NTGDHNGLVMTLSRSAGAHTDAVLRIECGGLKSPEASEGEIAPRLLLDGEPLALSGDK
                     WRISPWLLVTDDTATITAFLQMIQEGKAITLRDGNQTISLSGLKAALLFIDAQQKRVG
                     SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL
                     DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKNPLASRPVRLRLPFNNGQ
                     ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW
                     HGPDAWPTLWITR"
     gene            complement(2368..2943)
                     /gene="nudK"
                     /locus_tag="OQQ76_003042"
     CDS             complement(2368..2943)
                     /gene="nudK"
                     /locus_tag="OQQ76_003042"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose pyrophosphatase NudK"
                     /protein_id="HCS1969449.1"
                     /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR
                     GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAI
                     EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF
                     SQALEMIKTGEIRDGKTVLLLNYLQTSHLMD"
     gene            complement(3011..4990)
                     /gene="aegA"
                     /locus_tag="OQQ76_003043"
                     /pseudo
     CDS             complement(3011..4990)
                     /gene="aegA"
                     /locus_tag="OQQ76_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416963.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent uric acid utilization protein
                     AegA"
     gene            5196..6896
                     /gene="narQ"
                     /locus_tag="OQQ76_003044"
     CDS             5196..6896
                     /gene="narQ"
                     /locus_tag="OQQ76_003044"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HCS1969450.1"
                     /translation="MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAIN
                     IAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHL
                     NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG
                     IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTSLPNELGLLAKTFNQM
                     SSELHKLYLSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD
                     NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN
                     SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP
                     EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK
                     LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD
                     NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM
                     "
     gene            7060..10166
                     /gene="acrD"
                     /locus_tag="OQQ76_003045"
                     /pseudo
     CDS             7060..10166
                     /gene="acrD"
                     /locus_tag="OQQ76_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416965.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease AcrD"
BASE COUNT         2300 a         2707 c         2716 g         2443 t
ORIGIN      
        1 atagcataag cgacagtaat cgattctttg tgaacatcta acccgacgta caatgtgtta
       61 ttgttgttca tgctggcctc cgtggtggaa ataccggggt gtagcaacag ctcacccatg
      121 cggctctgac aacgatgtta acccgcgtta aatatcccac gttggccagc atctgtctca
      181 cggaaagtca tactgcctta cgggccgatg ctgcctgagt tgctcggcgg ttcggcggat
      241 ctggctccag caacctgacc atctggaaag gttctgtttc gctgaaggaa gatccggcgg
      301 gcaactacat tcactacggg gtgcgtgaat ttggcatgac cgctatagcc aacggcatcg
      361 cgcaccacgg cggctttgtg ccgtataccg cgacgttcct gatgtttgtt gaatacgccc
      421 gtaacgccgc gcggatggcg gcactgatga aagcgcggca gattatggtt tatacccacg
      481 actcaattgg cctgggcgaa gatggtccga cgcaccaggc tgttgagcaa ctggccagcc
      541 tgcgcttaac gccaaatttc agcacctggc gaccgtgcga tcaggtggaa gcggcggtgg
      601 gctggaagct ggcggttgag cgccacaacg gaccgacggc actgatcctc tcaaggcaga
      661 atctggccca ggtggaacgt acgccggatc aggtaaaaga gattgcccgt ggcggttatg
      721 tgctgaaaga cagcggcggt aagccagata ttattttgat tgccaccggt tcagagatgg
      781 aaatccccct gcaagcggca gagaaattag cgggagaagg tcgcaatgta cgcgtagttt
      841 ccctgccctc gactgatatt ttcgacgccc aggatgagga atatcgggag tcggtgttgc
      901 cttctaacgt tgcggctcgc gtggcggtgg aagcaggtat tgccgattac tggtacaagt
      961 atgttggttt gaaaggggcg attgttggga tgacaggtta tggggaatct gctccggcgg
     1021 ataagctgtt cccgttcttt ggctttaccg ccgagaatat tgtggcaaaa gcgcataagg
     1081 tgctgggagt gaaaggtgcc tgatggtgat cgccggatgc tgattgccgg atgcgactct
     1141 gacgcgtctt atccggccta tagcgtctta tccggcctac atgtccccgc cattttgttt
     1201 aacgggtgat ccacaacgtg ggccaggcgt ctggcccatg ccagttatcg caggtgggtt
     1261 ctgcggcgta acgcaccagg cgaaaacgct gaccgtcaaa gcgccagcgc gcctgaatgc
     1321 cacaatcgct taatccgcgc cctttcgcta aggtcaccag ttcacgcgat ttctcatcaa
     1381 atgttgcgtt catcagttcc agttcattcg tctcctgccc gttgttgaac ggcaaacgca
     1441 accgaaccgg gcgcgaggcc agcggatttt tacgcgacac aatccatgcc aaatcaatgg
     1501 tgttataggc ccctgcctca cagctaatca tcatcagcgc tttatcatca gtcagcgcag
     1561 tgacattcac ctcacgacgc aatggatcaa gcgagcagcg cagaccattc atccgccagt
     1621 ttccataatc cagcaaatcg ttgcgttctt cgagtgagag tggcgtcggc gttgggttaa
     1681 ccaccgcgac ctctttcagc gcaggcgcgg gcggtacgct gagcggcggt tcgtcccctt
     1741 tcttgatcca cgcggtttca ctgccaacgc gcttttgctg agcatcaata aacaacaacg
     1801 ccgcttttaa gccactcagc gaaatggtct gattgccgtc gcgtaaggtg atcgccttcc
     1861 cttcctgaat catctgcaaa aacgcggtga tggttgccgt atcatcggtt actaataacc
     1921 atggtgaaat ccgccacttg tcaccactta acgccaacgg ctcgccatct aacagcagcc
     1981 gtggcgctat ctccccttct gacgcctccg gcgacttcaa tccgccgcac tcaatacgta
     2041 aaacggcatc ggtatgcgcc ccggcgctgc ggctcagggt catcaccagt ccattatgat
     2101 cgcccgtatt acgcgccacg cagaagtttt ggttattaca ggtgaccagc cagtcggaaa
     2161 acgcccgttg cgctggtgcc gcccacacca aagacgtcgg caacaaagcg aaaaaaaaga
     2221 gaaggaaaat gcgatagcgc atggacggta cgaccccaga agttcaaaca aacagcacaa
     2281 gtcgtatctt cgttgcgcag gtagcgcggc tcaatcggat ttgtcggatt gagccaataa
     2341 taaacaacga aatattattg ttatttttca gtccattaaa tgtgacgttt gcaaatagtt
     2401 aagcaataac accgtcttac cgtcacgtat ctcgccggtt ttgatcatct ccagcgcctg
     2461 gctgaatggc agctcgagca cttcaatatc ttcatcttcg acaccgccac cggcgttagc
     2521 gcgctgattg tcactgtatt cggcgataaa aaagtggatt agctcagtca caccgcctgg
     2581 cgacatatac agttcaaata atttgcgcac ttcgcccact tcatagcccg tctcttcaat
     2641 cgcttcttta cgaatgcaca cttccggttc gtcgttatcc agcagcccgg cgcaggtttc
     2701 aatcagctgc ccgctttcat tgccattaac ccaggtagcg acacggaact gacgaatcag
     2761 aaccacggtc tttttcttcg cgttgtacag gaggatcgtc gcaccattac cgcgatcgta
     2821 aacttcacgt ttatggcgga taacttcgcc atctttgcgc gtgagatcgt aggtaatgtt
     2881 gtgcagggtg aaatagttat cggagagaat tttgtcttta atgagggtga tttgttgcgt
     2941 cataccgact ccacagcgcg aaatgaacaa ttatcttacg ctgtgaagtc gggtttgtct
     3001 gcgcaggcta tcagtgagat ttgactgatt ttacccccag ccagtcaata atcccctgtg
     3061 ccgcatgacg tccttctgcc attgcggtaa ccaccagatc cgcaccacgc acggcgtcgc
     3121 caccggcgaa gattttcgga ttggtggtct ggtaacggta ctggctttcc acatccgcga
     3181 tgatgcggcc ccatttgtct accgttacac cgtgcgactc cagccacggc atcccgtgcg
     3241 gattgaagcc aaacgccata atcaccgcgt cggctggcat gacaaattca ctgccttcca
     3301 ccggtactgg acgccgacgc ccctgggcat ccggctcgcc aagacgcgtg cgcaggaaac
     3361 gaatcccgca aacgtgacct tgttcattca gctcaagcgc caccggctgg acgttaaatt
     3421 cgaagttggc cccctcttcg cgggcgttct tcacctcttt cttcgagcct ggcatgttag
     3481 cttcatcacg acgataagcg caggtgacgt tactcgcgcc gtggcgcagc gcagtacgca
     3541 cacagtccat cgcggtgtcg ccgccgccca gtaccacgac gttaagtccg gcggtattga
     3601 taaacggctc ttccggtagc tcttcgagcc ccatcacctg tttagtgttg gcgatgagga
     3661 acggcagcgc gtcataaacg cccggcgcat cttcattggg taaacccgct ttcatggaac
     3721 ggtaagtgcc tacgccaacg aagaccgcgt cgtattgttc caaaagcgaa tccaaagaga
     3781 catctttacc cacttcacaa ttgagttcga agtgaatccc catcgcgctg aagatttccc
     3841 gacggcgtgc cagcagggat ttatccagtt tgaaagaagg aatgccgaaa gtgagcaagc
     3901 caccgatttc tggatggcga tcgtacaccg tcaccgccac gccattgcgg gtcagaacat
     3961 ccgcacaggc cagccctgcc ggacctgccc cgataatcgc cacccgcttg tccactttgg
     4021 tgacatgact taagtcagga cgccaacctt tcgccaacgc ctgatctgaa atatagcgtt
     4081 caatgttgcc gatagttacc gcgccgtgct catcgcgaat agtacaggca ccttcacaca
     4141 aacggtcttg cggacaaacg cgtccggtaa tttccggcag ggtgttggtc tggtgagaaa
     4201 gctcgacggc ggcgtcgatg tttccggctt tcaccagttc aatccactgc ggaatatggt
     4261 tatgcagcgg gcaggtccat tcacaaacgc tgtgctcgcc gcacttaagg cagcgcgagg
     4321 cttcccgtta tgcctggtcg gcgcgaaatg gcagataaat ttcatcaaaa ccggttttgc
     4381 gcgcttcaat cgccagttta tccggctcgc cacgcgcggg cgttgcctgc atttgttcga
     4441 ctttactcat taccggcatt tcttgtgcag cggtactggc atgccacggt tgatgctcct
     4501 gacgtgcggt gcgcaagcgg cgggatttcg ccatgccgga gagtgcgacg tcagtgacca
     4561 gttgcagcgc gtccgccggg caattctcga cacaggcagg accgttttcg cgccctgcac
     4621 aaaggtcgca tttatgcgcc gtggctttta cttttcctgc cgcgacgggt gtcaggacga
     4681 tttgcatcgt accaaacgga caggccacca cgcaggattt acagccaata cacttttgct
     4741 gattgacctg aatgctgtca tcaacgtggc tgattgcgcc attagggcag ctacgggcgc
     4801 agggcgcatc ttcacaatgg tgacaggtca ctgcactacg ttgctgctga tgtttgataa
     4861 ccgtaattcg gggatgaaaa tggtgttggc tcaggacatg ttgctcatca ttgtgagcca
     4921 tgacacaggc gatttcacaa gcatgacaac ccagacattg ctgactgttg gccataataa
     4981 aacgattcat aacgaccttc ttttttggtt gtaaaaacct tattctttat atgagtgttg
     5041 ttattacccg acttacaggg gaatcggcaa tgttcatgtg cccagaataa gtaactattt
     5101 cgctataaac tgtggcagct caaataatcc catcactgac taaattgcgt ttcagcgaac
     5161 tggaacatta atgatttttt gtggagaaga cgcgtgtgat tgttaaacga cccgtctcgg
     5221 ccagtctggc ccgggccttt ttttacattg tgctgctgtc gattctttcc acgggtatcg
     5281 ctctgctaac tctggcgagc agtttgcgcg acgctgaggc tatcaatatt gccggatcgc
     5341 tgcgtatgca gagttaccgc ctgggctacg acttgcaaag tggcagtcca caactcaatg
     5401 cacatcgcca gttgtttcag caggcactgc attcaccggt attaaccaat ctcaacgtct
     5461 ggtatgtgcc agaagcagta aaaactcgct atgcgcatct gaatgccaac tggctggaga
     5521 tgaataatcg gctcagcaag ggcgatttgc cgtggtatca ggccaatatt aataattatg
     5581 ttaatcagat agacctgttc gtgctggctt tacagcacta cgctgaacgc aaaatgctgc
     5641 tggtggtggc gatttccctg gctggcggta tcggtatttt cacgctggtc ttttttactt
     5701 tgcgccgtat acgccatcag gtggttgccc cgctgaatca gctggttacc gccagtcaac
     5761 gtattgaaca cgggcagttc gactcgccgc cgctggatac cagtctgccg aatgagcttg
     5821 gtctgcttgc aaaaaccttt aaccagatgt cgagcgagct gcataaattg tacctttcgc
     5881 tggaggcgtc agtagaagaa aagacccgcg atctccacga ggccaagcgt cgtctggagg
     5941 tgttgtatca atgttcgcag gcgctgaaca caagccagat tgatgtgcat tgtttccgcc
     6001 atattttgca gattgttcgc gacaatgaag cggctgaata tctggagtta aatgtcggtg
     6061 aaaactggcg gattagcgaa gggcaaccaa acccggaatt gccgatgcag attttaccgg
     6121 tgacaatgca agagacggtt tacggcgaac tgcactggca aaatagtcac gtttcatcat
     6181 cagaaccgct gcttaacagc gtttcgtcga tgctgggacg cggtttgtac tttaatcagg
     6241 cgcagaagca ttttcagcag ttattgttga tggaagaacg tgcaaccatc gcccgcgaat
     6301 tgcacgactc gctggctcag gtactttctt acttacgtat ccagttgacg ttactgaagc
     6361 gttcgatacc ggaagataac gccaccgcac aaagtatcat ggccgatttt tcccaggcgt
     6421 tgaatgatgc ttatcggcag ttacgcgagc tgttgactac tttccgcctg acgctgcagc
     6481 aggcggatct cccctccgcg ttgagggaaa tgctggatac gttacaaaat caaaccagcg
     6541 ccaaactgac cctcgactgc cgtctgccaa cccttgcgct ggatgcgcaa atgcaggtgc
     6601 atttgttgca aattattcgc gaagcggtgc tgaatgcgat gaagcacgcc aacgccagcg
     6661 aaatcgccgt cagttgcgtc accgcgccgg acggcaatca cacggtttat atccgtgata
     6721 acgggattgg tatcggtgaa ccgaaagaac ccgaaggtca ttatggtctg aatatcatgc
     6781 gcgaacgcgc ggaacggctg ggtgggacgc tgactttttc acaaccttcc ggcggcggca
     6841 cgttagtgag tattagcttt cgctctgcag agggtgagga aagtcagttg atgtaatgcc
     6901 tcctactgac caaagaatac ttgcacttaa ggttcagtat aaaagggcat gataatttac
     6961 attaactcct ttttttctcc acgattggct cgtaccttgc cgctacagtg aagcaagtca
     7021 agcctacaac gatacgcaga aacacgaggt cctcttttaa tggcgaattt ctttattgat
     7081 cgccccattt ttgcctgggt gctggcaatc ctgttgtgtc tgacagggac cctggcgatt
     7141 ttttcattgc ccgttgaaca ataccccgat ctcgcgccac cgaatgtgcg agtgaccgct
     7201 aactatcccg gcgcatcggc ccagacgctg gaaaacaccg tgccccaggt tatcgagcaa
     7261 aatatgaccg gcctcgataa tctcatgtat atgtcatctc agagcagtgg caccggtcag
     7321 gcatctgtca ctttaagttt taaagcaggc accgatccgg acgaagccgt gcagcaagta
     7381 caaaaccagc tgcaatcagc catgcgaaag ttaccgcagg cggtgcaaaa tcagggcgtg
     7441 acggtgcgta aaaccggcga taccaatatt ctgaccattg ctttcgtctc taccgatggt
     7501 tcgatggata aacaggatat tgccgattat gttgccagta atattcagga cccgttaagc
     7561 cgcgtgaatg gcgtcgggga tatcgatgcc tatggttcgc aatattccat gcgtatctgg
     7621 ctggccccgg cgaaactcaa cagtttccag atgacggcta aagatgtcac tgatgccatt
     7681 gagtcacaga acgcgcagat tgcggttggg caacttggtg gtacaccttc cgtcgataag
     7741 caggcgctca acgccaccat taacgcccag tcactgctgc aaacaccaga acagttccgc
     7801 gatatcacct tgcgggtgaa tcaagacggc tcagaggtaa ggctgggcga tgtcgccacc
     7861 gtcgaaatgg gggcggagaa atacgattat cttagccgct tcaatggtaa gccagcctcc
     7921 gggctggggg taaaactggc ctccggcgca aacgaaatgg cgacagggag ctggtgctca
     7981 atcgtctcga cgagctggcg cagtacttcc cgcacggact ggaatacaag gtggcgtatg
     8041 aaaccacctc gtttgttaaa gcctccattg aagacgtggt gaaaacgctg ctggaagcta
     8101 tcgccctggt tttcctcgtt atgtatctgt tcctgcaaaa cttccgcgcc acgctaatac
     8161 ccactatcgc cgtgccggtg gtgttgatgg gaaccttctc cgtactttac gccttcggtt
     8221 acagcgtcaa caccttaacc atgttcgcga tggtactggc gatcggtctg ctggtggatg
     8281 acgcaatcgt ggtggtggaa aacgtcgaac gtattatgag tgaggaagga ctcactcctc
     8341 gcgaagccac acgtaaatcg atggggcaga tccaggggca ctggtcggga ttgcgatggt
     8401 gctttcggcg gtatttgtac caatggcctt cttcggcggc accaccggtg ccatctatcg
     8461 ccagttctct attaccattg ttgcggcgat ggtgctgtca gtactggtag cgatgatcct
     8521 cactccggct ctgtgtgcca cactacttaa gccactgaaa aaaggtgagc atcacgggca
     8581 aaaaggcttt tttgcctggt ttaaccagat gtttaaccgc aacgccgaac gctacgaaaa
     8641 aggggtggcg aaaattctcc accgcagcct gcgctggatt gtgatttatg tcctgctgct
     8701 tggcggcatg gtgttcctgt tcctgcgttt gccgacgtcg ttcttaccgc tggaagaccg
     8761 tggcatgttt actacctcgg tacaattgcc cagcggttca acccaacaac agaccctgaa
     8821 agtcgttgag caaatcgaga aatattactt cacccatgaa aaagacaaca tcatgtcggt
     8881 gtttgccacc gttggttctg gccctggggg taacgggcaa aacgtggcgc gaatgtttat
     8941 ccgcctgaaa gactggagcg aacgcgacag taagaccggc acctcgtttg ccattatcga
     9001 gcgtgcaaca aaggcgttta acaagattaa agaagctcgc gttatcgcca gcagcccgcc
     9061 agcaattagc ggtcttggta gttctgcggg ttttgatatg gagttgcagg accacgctgg
     9121 agcaggtcac gatgcgctga tggcagcacg taaccagttg ctggcgctgg cggcggaaaa
     9181 cccggagcta acccgtgtgc gccataacgg cctcgatgac agtccgcagt tgcagattga
     9241 tatcgaccag cgtaaagctc aggcgctggg cgttgctatc gacgatatta acgacacact
     9301 gcaaaccgcc tggggttcga gctatgtgaa tgactttatg gatcgcggtc gtgtgaagaa
     9361 agtctatgtg caggcagctg cgccgtatcg catgctgcca gatgacatta atctctggta
     9421 tgtccgaaat aaaaatggcg gcatggtgcc cttctctgct ttcgcgacct cacgctggga
     9481 gactggctcg ccgcgtctgg aacgctataa cggttattct gcggttgaga ttgttgggga
     9541 agccgcaccg ggggtcagta ccggtacggc gatggatata atggaatcgt tagtgaagca
     9601 gttgccaaac ggctttggtc tggagtggac ggcgatgtcg tatcaggagc ggctttccgg
     9661 cgcgcaggct ccggcgctgt acgccatttc cttgctggtg gtattcctgt gtctggcggc
     9721 gttgtatgaa agctggtcgg tgccgttctc ggtaatgctg gtcgtgccgc tgggggttat
     9781 cggcgcgctg ctggcaacct ggatgcgcgg gctggaaaac gacgtttact tccaggtggg
     9841 cctgttaacg gtcattggtt tatcggcgaa aaacgccatc ctgatcgtcg agtttgctaa
     9901 cgagatgaac caaaaaggcc acgacctgtt tgaagcgacg ctccacgcct gccgtcagcg
     9961 tttacgcccg attctgatga cctcgctggc atttatcttc ggcgtattgc caatggcaac
    10021 cagcacgggt gccggttccg gtggtcagca tgcggtgggt actggcgtaa tgggcgggat
    10081 gatttcggcc actattctgg ctatttactt cgtgccgctg ttctttgtac tggtgcgccg
    10141 ccgcttcccg ctgaagccgc gcccgg
//
LOCUS       DAJVUN010000141        10160 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.141, whole genome shotgun sequence.
ACCESSION   DAJVUN010000141 DAJVUN010000000
VERSION     DAJVUN010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10160
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.141"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..877)
                     /locus_tag="OQQ76_003046"
     CDS             complement(<1..877)
                     /locus_tag="OQQ76_003046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HCS1969451.1"
                     /translation="MSRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSG
                     ETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLMQFQRPA
                     WDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPT
                     PEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKA
                     FRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLA
                     YEALLEKYPQHHGKIR"
     gene            complement(852..1652)
                     /gene="otsB"
                     /locus_tag="OQQ76_003047"
     CDS             complement(852..1652)
                     /gene="otsB"
                     /locus_tag="OQQ76_003047"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HCS1969452.1"
                     /translation="MTEPLTETPELSAKYAWFFDLDGTLAEIKPHPDQVVVPDNILQG
                     LQLLATASDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAI
                     ARDISVQLHTVIAQYPGAELEAKGMAFALHYRQAPQHEDALMTLAQRITQIWPQMALQ
                     QGKCVVEIKPRGTSKGEAIAAFMQEAPFIGRTPVFLGDDLTDESGFAVVNRLGGMSVK
                     IGTGATQASWRLAGVPDVWSRLEMITTALQQKRENNRSDDYESFSRSI"
     gene            complement(1819..2805)
                     /gene="araH"
                     /locus_tag="OQQ76_003048"
     CDS             complement(1819..2805)
                     /gene="araH"
                     /locus_tag="OQQ76_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter permease AraH"
                     /protein_id="HCS1969453.1"
                     /translation="MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPN
                     FATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESL
                     WIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDE
                     SFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVV
                     RTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKI
                     SYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV"
     gene            complement(2820..4334)
                     /gene="araG"
                     /locus_tag="OQQ76_003049"
     CDS             complement(2820..4334)
                     /gene="araG"
                     /locus_tag="OQQ76_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter ATP binding protein
                     AraG"
                     /protein_id="HCS1969454.1"
                     /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA
                     GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN
                     IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALAR
                     NAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD
                     GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKALGVRTPIS
                     LAVRSGEIVGLFGLVGAGRSELMKGLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM
                     LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADQHIRSLNIKTPG
                     AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV
                     AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA"
     gene            complement(4404..5393)
                     /gene="araF"
                     /locus_tag="OQQ76_003050"
     CDS             complement(4404..5393)
                     /gene="araF"
                     /locus_tag="OQQ76_003050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter substrate-binding
                     protein AraF"
                     /protein_id="HCS1969455.1"
                     /translation="MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEW
                     KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR
                     GYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV
                     MVITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE
                     VKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKVQATGFYGSLL
                     PSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGGK"
     gene            6107..6610
                     /locus_tag="OQQ76_003051"
     CDS             6107..6610
                     /locus_tag="OQQ76_003051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin-like protein"
                     /protein_id="HCS1969456.1"
                     /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR
                     AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA
                     QLADEAKELNDDSIVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN
                     VVSHQLH"
     gene            complement(6689..6940)
                     /locus_tag="OQQ76_003052"
     CDS             complement(6689..6940)
                     /locus_tag="OQQ76_003052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2766 domain-containing protein"
                     /protein_id="HCS1969457.1"
                     /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ
                     LKNIDFSNHPAAADPVTMRAIQKAIALIELKFTPQGESH"
     gene            complement(7055..7141)
                     /gene="azuC"
                     /locus_tag="OQQ76_003053"
     CDS             complement(7055..7141)
                     /gene="azuC"
                     /locus_tag="OQQ76_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein AzuC"
                     /protein_id="HCS1969458.1"
                     /translation="MKLRKILKSMFNNYCKTFKDVPPGNMFR"
     gene            7404..7727
                     /locus_tag="OQQ76_003054"
     CDS             7404..7727
                     /locus_tag="OQQ76_003054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecR-like lipofamily protein"
                     /protein_id="HCS1969459.1"
                     /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATDIVRLVYDQAFLQ
                     HAHTDRYVSRGIADRACQQEGYTHAIPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA
                     FPVFL"
     gene            7898..8395
                     /gene="ftnA"
                     /locus_tag="OQQ76_003055"
     CDS             7898..8395
                     /gene="ftnA"
                     /locus_tag="OQQ76_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HCS1969460.1"
                     /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR
                     RHAQEEMTHMQHLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN
                     ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST
                     LDTQN"
     gene            complement(8433..8672)
                     /locus_tag="OQQ76_003056"
     CDS             complement(8433..8672)
                     /locus_tag="OQQ76_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecH family protein"
                     /protein_id="HCS1969461.1"
                     /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA
                     EGMTAGELVAFLAAKGKFIPSKDGFSTDQSKICRH"
     gene            8863..10074
                     /gene="tyrP"
                     /locus_tag="OQQ76_003057"
     CDS             8863..10074
                     /gene="tyrP"
                     /locus_tag="OQQ76_003057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter TyrP"
                     /protein_id="HCS1969462.1"
                     /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW
                     ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA
                     GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM
                     LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNVRKLRRVF
                     ITGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVH
                     LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV
                     MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF
                     LIAAGLLPEVG"
BASE COUNT         2564 a         2538 c         2359 g         2699 t
ORIGIN      
        1 aacgaatttt accatgatgc tgcggatatt tttccagcaa cgcttcatag gcgagaaaac
       61 gctctggcaa acctttggaa taatccagcc gttcgacaga aaagatattt tgtacgtttt
      121 tcagttccgc tttaagttgc gccagttttg gcggcagtgg cccggcagcc tgtttggcta
      181 tttctttcgg ttcaatgccg atcgggtaga cttctgttcg aaatgctttg ccccaggctg
      241 tatggctttt tgcgctacgt gtcgtgacgc gggtcaggtt agaaagacaa tccaggaacg
      301 ccagacgatc gttttctgtc tggaaaccca gcaaatcata atcacaaagc tgttcaagca
      361 aggtgtcata tgtcggcagc gcgttgaaga tttccggtgt cgggaaagga atatgcagaa
      421 agaaaccaat gcgattattc accccacgtt tgcgtaattc atgcgcaaag ggcaacaggt
      481 gataatcgtg gatccagata atgtcatcgt cttgcaacag cggcagtaat ttatctgcca
      541 gcaacgcatt tacgcgtaga tagccgtccc aggcaggacg ctgaaattgc atcagatcga
      601 gccgataatg aaaagcgggc cagagaacgg cattggagaa ttggttgtag tattcgtcaa
      661 ggtcctgttc gctgaggtta aaagaggccc acgtaatgtt accttttttc acctttttta
      721 gcggctgatc ctcattccct gtttcaccac tccagccaaa ccacagtccg cctgcggctt
      781 tcagtgcccc cagtatgcca acggcaaggc caccggcact ggcggcgtgc tcgtctggtg
      841 gtgcaatccg gttagatact acgactaaac gactcatagt catcactcct gttattttct
      901 cttttttgtt gtaatgcggt ggttatcatt tcaagcctgc tccagacatc cggcacaccc
      961 gccagtcgcc atgatgcctg agttgcacct gtgccaattt ttactgacat tccgcccagt
     1021 cggttaacga ctgcgaagcc agattcatcg gttaaatcat cgcccagaaa tacgggcgtt
     1081 cgcccgataa agggagcttc ctgcataaaa gctgcaattg cctcaccttt actggtacct
     1141 ctcggtttga tctcgacaac acactttccc tgctgtaacg ccatttgtgg ccagatctga
     1201 gtaatacgtt gcgctaatgt cattaatgcg tcttcatgct gcggagcctg acgataatgc
     1261 agcgcaaaag ccatcccttt cgcctccagc tccgcgccgg gatactgagc gataactgta
     1321 tgcagttgca cgctaatatc acgcgcaatc gcatccggca gatgaacgat atgcgtttta
     1381 ccattgatgt cacggcgctc cgccccatgc acgcccgcta acgggaagcg ataaggtttt
     1441 gccagtgcgt caagctccac cattgagcgc cctgatatca atgccaatgc accatcactt
     1501 gcggttgcca gtagctgtag tccttgcaga atattgtcag gcacgacgac ctgatcggga
     1561 tgcggtttga tttccgccag cgttccatcg agatcaaaaa accaggcata tttcgcggat
     1621 agttcagggg tttcggttaa cggttctgtc acccggttct cctacttctc ttttcttatt
     1681 gttttgcgca gaacgcgctt tacagacatg taagtataga cagtgtgacg ggggtcgcca
     1741 tttgcaacga agaacagcca accgttatgg cggttggctg tggtgggaaa aaacgctaaa
     1801 ttgttgcaga aaaaagcatc agacagtgcg tttcgctttt tgcttgtaac ggtcgaagat
     1861 caccgctgcc agcaggatta agccgcgaac cacgtactgc gcgaaaggag aaatattaag
     1921 caggttcatg gcgttttcca cggtgcctaa aattaagata cccgccacca catatgagat
     1981 ttttccgatg cctcctttca gagaaacgcc acctaaaacg caggcggaga taacaatcag
     2041 ctcgtaacca atcgacgtca ttggctgccc actggtcata cgtgaagcca gaataattcc
     2101 ggctatcgca gataccaggc cagagagaac aaagataata attttggtgc gaacaaccgg
     2161 tacacccgcc agacgcgcag cctcttcgtt cccgccaatc gccagggtgt tacgaccaaa
     2221 ggtggtttta ttcagcaaca aaccaaagat aatcagacac gcgacggtga gccagattgg
     2281 cgcaggcaga ccgaaccagt tagcgtaacc aagggcaaag aagctttcat cttcgatacc
     2341 gaccgcttta ccgtctgaaa tgatgtacgc cagacctcga acaatctgca tcgttgccag
     2401 tgttgtgatc agagcattta ttttcagttt ggcgataaca aagccattga ccaggccaca
     2461 gagaatgcca agcagcaacc ccgctgccac gccaatccac aggctttcag tcaggttgat
     2521 aaccaccgcc gtggtgacac ccgcacaggc aattacggag gcgacagaaa ggtcaaagtc
     2581 accggaagca aggcagaaca acatgccaca cgccaccatc cccgacatgg aaattgccag
     2641 gcccaaccct ttcatattaa tgaaggtggc aaaatttggg acaaaaatgg cacaggcgat
     2701 aaagagcacc gcaaacacca ccagcatgcc gtactgatcc cagatacgcc cgaagctgaa
     2761 tgacgactta ggtgcgccag aacccgatgt agaaacagaa gacatcatac tctccttact
     2821 caggcaactg cctggctgac tttaggcatc gcaaggctca gtgcctgacg ctcatctgcc
     2881 tgctcgtgta acaattcacc ggcgatttca ccttcccgca tcaccacaat ccggtcggca
     2941 acgccgagga cttcaggtaa gtcgctggag gcaaacagca ccgccacacc ctgcgccgcc
     3001 agcgcataaa ttacgttata tatttcgtgc ttagcaccaa catcaatgcc gcgcgtaggt
     3061 tcatccagca aaatgacctt catctcttcc gataaccagc ggcccagaat ggctttttgc
     3121 tgatttccgc ctgagagatt catgatcagt tgctcagcgc ccggcgtttt gatgttgagc
     3181 gaacgaatgt gctgatcggc attgttttct tcccaaccgt tgttgattac acaaccgccg
     3241 agcacatgtt tgcgtctggc actgatgttg atattgtcgc gaacggagtg cacgggaata
     3301 atgccttccg ctttgcgatc ttccgggcag agcatcatgc ctgcggcaat ggcgtggctc
     3361 ggtttacgaa tatcgatcgg ctgttggtcg atataaacct gaccggcggt gatttgcgtc
     3421 ccgccaaaca agcctttcat taattcgcta cgccccgccc ctaccagacc aaacagccca
     3481 acaatttcac cactgcgaac cgccagactt attggcgtac gcacgcctag tgctttcaca
     3541 gcatcaagac gcaggcgctc ctcgccataa ctacgaggtt gccagccgta gatatcgcca
     3601 atgtcgcgcc cgaccatcgc ctgcaccagc gcgtcgtggt caacctgctg catatcggta
     3661 aaggttttga cataacgtcc atctttaaag acagtgatgg catcgctgag ggcaaatatt
     3721 tcttccatac ggtgagaaac gtataagatc acccgcccct cttttcgcag ttcacgaata
     3781 acgcggaaaa gattgtcgat ttcgcgggca gaaagggagc tggttggctc atcaaaggcg
     3841 ataattttag cgttacgcgc cagcgccttg gcgatttcaa ccatctgcca ctgaccaatg
     3901 gagagatatt tcagcggcgt gtccgggtca atatccatac caagatgttt aagttgtaaa
     3961 cccgcctcat aattcagcaa tgagcgattc acaatgccgc ctttatgcgg cagctggccg
     4021 agatagatgt tttccgcgac ggtcatttcc ggcacgagat gcagttcctg gtaaataatc
     4081 gccacacccg cgttaagtgc tgcggtcgtg tcggaaaagg acatttcctg cccattaatc
     4141 actacagaac ccgtggttgg cgcatagttg ccgctgagga tttttaagag agttgatttt
     4201 cctgcgccat tttcacccat caacgcatga acctgaccgg catagcagtc aaaactaata
     4261 tccgtcagcg ccttaacgcc gggaaacgtt ttaccgatgc cgcgaaatga gagatacggg
     4321 gtagactgtt gcataacgtc tccgtgaatc actggtcgtt cacaccccct ctgcatcatg
     4381 cagaggggaa tttttccggc aaattactta ccgcctaaac cttttttctc cagttcttct
     4441 ttaaagttgt cacgcgtgat cagcaccacg tcggtaactt cggtaaattt tggcggttca
     4501 acgtcttttg ctacccagtt gtaaagcatt tcgctggatt tatagccatg tacgtccggg
     4561 cttggcagca gggaaccgta gaagccggtt gcctgtactt tagacagttc gctcaccgca
     4621 tccacaccgt taatgccaat gccgataata tcagcagctt taaagccctg accttccgtc
     4681 gcgcgtacgc cgcccagcac ggtgctgtcg ttcataccga cgatcagcca atgtttaact
     4741 tcaggatgtt gaaccagcat tgagttggca gcgtcaaatg cccccgggat gtcgttagat
     4801 ttggtaggta cctgataaat ttgtttttcc gggaatccgg ccgctttcag cgcatccata
     4861 gatcccgtag tacggcggcg ggcggtatcc agttcgttgg cggtaatcac catcaccgcg
     4921 ctttctttga catcccagcc acgtttctgc atctctttat acagttcctg accctgacgt
     4981 tcgccaattt tagtcgccgc catcatcacc agcggaacgg tatccattgg cttacctttg
     5041 gcgttaacaa actgatcatc cacggcaatg actttcatat cgtagccacg cgctttcgcg
     5101 acgatggcag agccgagttt ggggtccgga gtacaaataa cgaaaccttt tgcgccactg
     5161 gcagccaggc tgtcgatcgc gttcaatgtt ttttcgccat ccggcacggc aatcttaata
     5221 acctcaaacc ctaaatcctt cccggcttta tcggcaaact tccattcggt ctggaaccac
     5281 ggctcttccg gttgcttcac cagaaaaccg agcttcaggt tctccgccat agcggattgt
     5341 gacataacgg ctgccagacc aatggctgcc agggctttag taaatttgtg catggttctc
     5401 tccagcttta gtgtcgtttt gtgtagggca aaaacgaatg acattcgtta aattaatcgg
     5461 aaaacaaagc attacctttt aactaaaaga taagtgaccg tgttgacata gttttagcga
     5521 gaaattaatt ctccatagga gagcaatatc acatcgcaga attacagtga gaacgtgcat
     5581 aaatttagcg ggaaaagaca taagggaaag ccaatttgtc agacaaattg tcgaatgcac
     5641 agcagattaa tccataagat tagcttggaa atccttgttg tctttggtac ccatgcggga
     5701 tgtcttcttt ttaaccagtc aataggccac attacctggc gttgagtttt tgaaatggtg
     5761 taataaccgc aactcaaaga tgtggaaaat gcacgtcatt catttcgcca ttaattatca
     5821 ctgtgctcat taattaacag aacacgtata atgagagcca tctcgcaaaa atgaaaaaac
     5881 gttttataaa atcatcattt catcaatgaa atgtaaaaat atataaactt gatgatttaa
     5941 gcattttctt atacccgttc agacgttatt cttatttcag atcatcgtca gaattgactc
     6001 cacgatcaca tttcggaccg gcagaaagga attattctgc aaacagtaat tatggtgttt
     6061 tgatttatct tgcacctctc cacttctgga tataaggata ttaggtatgg caaccgctgg
     6121 aatgcttctc aaactcaact ctcaaatgaa ccgcgagttt tacgcatcca atctctacct
     6181 tcacctgagt aactggtgtt ctgaacagag tctgaacggc accgccactt tccttcgcgc
     6241 ccaggcacag agtaatgtga cccaaatgat gcgcatgttt aactttatga agagtgtcgg
     6301 cgctaccccc atcgttaaag ccattgatgt tcccggtgaa aaactgaact ctctggaaga
     6361 actgttccaa aaaacgatgg aagaatacga gcaacgttct agtacgttgg cacagttagc
     6421 cgatgaagcg aaagaactga atgatgattc aatcgtcaat ttcctgcgcg atctggaaaa
     6481 agaacagcag catgatggtc tgttgctgca aaccattctt gatgaagtgc gcagtgcgaa
     6541 acttgctggt atgtgcccag tgcagaccga ccaacatgtt ctgaatgtcg tgtcgcatca
     6601 gctgcattga tcatacatcg gcgctaatgc attgcgccga tgaagttttt gagaaaccgc
     6661 tgcctcatct ttttgaagca gcggtttttt aatgggattc gccttgtggg gtaaacttga
     6721 gttcaatcag cgcgatggct ttttggattg cccgcatggt gaccgggtct gcggcggcgg
     6781 gatggttact aaagtcgata ttcttcagct gactggacat tttttcacga acttcaacgg
     6841 gcgcgattac atcgagaaca tccagaattt gtttgataac caactggcaa gcaaccacat
     6901 cagaaaccag ttcctgatcg gcattcagcg gctgggacat cgtaaactcc tgatagcatt
     6961 ttgaaagccg ttatagtagc ggcttcacat cttcagcgat agtcacatcc accgtcatca
     7021 ggacacaaaa aaacctgccg gagcaggttt tttgttatcg gaacatattg cctggcggta
     7081 cgtctttgaa cgtcttgcaa tagttattga acatactttt caggattttg cgcagtttca
     7141 tcgcggcact ccgaccattt gttatacata tgttattttc tttgcgctca taatatgaca
     7201 accatcacaa aaatcaatct ttatgtgatg caaatcacac aaataccccc ttaatgttat
     7261 aaaaatgata atcaaaaaac agccccccca tttctgacac ctacagatgg caagaaatag
     7321 cgcctgccag gcgtcttttc cggtcattgt cgcagcgctg taacgcgtaa aatagtgctt
     7381 tcttttactc ttctggctgg accatgagac ttctgattct gactctttca ttaataacgc
     7441 tggcggggtg tacggttact cgccaagccc atgtgagcga agttgacgcg gcaacagata
     7501 ttgtacggtt ggtttatgac caggcttttt tgcagcatgc ccataccgat cgttatgtca
     7561 gtcgcgggat cgccgatcgc gcatgccagc aggaaggcta tacccacgcg atcccctttg
     7621 gtcagccagt aggcaactgt agcctttttg cgggttcctt atgtttgaat acggaattca
     7681 ctttgtcata tcagtgccat cattccgcct tccctgtctt tctctaaata ttttaatcag
     7741 cgaggggatc ttcgctgatt aaagaaatag cggtaatgcg ttttattccc attcgtattt
     7801 ttaataatta aagtttatat tttacctttt gcaaataata aaataacaaa ttatagtgac
     7861 gccacagcaa caaatataac ctttgtggag cactatcatg ctgaaaccag aaatgattga
     7921 aaaacttaat gagcagatga acctggaact gtactcttca ctgctttatc agcaaatgag
     7981 cgcctggtgc agctatcata ccttcgaagg tgctgccgcg ttcctgcgcc gtcacgccca
     8041 ggaagagatg acgcatatgc agcatctgtt tgattacctg actgataccg gcaatttacc
     8101 gcgtattaat accgttgaat ctccgtttgc tgaatattcc tcacttgatg aattattcca
     8161 ggaaacctat aaacacgaac aattaatcac ccagaaaatt aacgaactgg ctcatgctgc
     8221 aatgaccaat caggactacc caacatttaa tttcctgcaa tggtatgttt ctgagcagca
     8281 tgaagaagag aaactgttca aatcgattat tgataaatta agcctggcag gcaaaagcgg
     8341 cgaaggtctg tattttatcg acaaagaact ctctaccctc gacacacaaa actaatgctc
     8401 tccggcggca ggtttactgc cgccgtttca aatcagtgac ggcaaatctt actctgatcg
     8461 gtcgaaaaac cgtctttcga aggtataaat ttgccttttg ctgccagaaa cgctaccagc
     8521 tctcccgctg tcatcccttc tgccgagcag gtgtgaaaac gtgcctgttc accaaaacgc
     8581 gctttaattg ctgcttccag actggcatgc gtatattgct cgcctgattc aatcatcata
     8641 tttaacactt catgaccgtg aatagagtcc atcgttcctc ctcaaaaaaa gcctagcgta
     8701 gcgattgccg cttatgaaga ctttgcgcca gagcagaact gaatgctttt tattgtacat
     8761 ttatatttac accatatgta acgtcggttt gacgaagcag ccgttatgcc ttaacctgcg
     8821 ccgcagatat cactcataaa gatcgtcagg acagaagaaa gcgtgaaaaa cagaactctg
     8881 ggaagtgttt ttatcgtggc gggaaccaca attggcgcag gcatgctggc aatgccgctg
     8941 gctgcggcag gtgttggttt tagcgtcacg ttaatcttgt tgattgggct ttgggcgttg
     9001 atgtgctaca cggcgctatt actgctggag gtgtaccagc atgttccggc agataccggt
     9061 ctgggcacgc tggcaaaacg ctatctggga cgctacggtc aatggctgac gggcttcagt
     9121 atgatgttct taatgtatgc tctgactgcg gcatacatca gcggtgccgg tgaattgttg
     9181 gcctccagca tcagcgactg gacaggtatt tcaatgtcgg caaccgctgg cgtgctgttg
     9241 ttcacttttg ttgccggtgg cgtggtttgt gttggaacat cgctggtcga tttatttaac
     9301 cgttttctgt tcagcgccaa aattattttt ctggtggtga tgctggtatt gctgctaccg
     9361 catattcaca aagtgaatct tttaaccctg ccgttgcaac aggggctggc tctgtcagca
     9421 atcccggtga tttttacctc atttggtttt cacggtagcg tgccgagtat tgtcagctat
     9481 atggatggca acgttcgtaa gctacgcagg gtgtttataa ccggtagtgc gatccccctg
     9541 gtggcatata ttttctggca ggtggcaacg cttggcagca ttgattcaac aacctttatg
     9601 ggattgctgg ctaatcatgc tggattaaac gggctgttac aggcgttacg cgaaatggtg
     9661 gcctctccgc atgttgagct ggcagtgcat ttatttgctg atttagccct cgccacgtca
     9721 tttctcggcg ttgcgttagg cttatttgat tatctggctg atttatttca gcgttcaaat
     9781 accgttggtg gacggttgca aactggtgca attacctttc tgccgccgtt ggcgtttgca
     9841 ctgttttatc cacgaggatt tgtgatggcg ctgggttacg ccggtgtggc gctggcggta
     9901 ctggcattga ttatcccttc gctgttgacc tggcaaagca gaaagcacaa tcctcaggcg
     9961 ggttaccggg tcaaaggtgg tcgtccggcg ctggtggtgg tgtttctctg tggtattgct
    10021 gtgattggcg tgcaattttt gattgcggca gggttgttac cagaagtggg gtgatcagat
    10081 agcctcaaat tccttattgg gtgccagaat taacgctgac acccaatttg gcctcttaat
    10141 gcaggcagca ctgcttaaat
//
LOCUS       DAJVUN010000142        10128 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.142, whole genome shotgun sequence.
ACCESSION   DAJVUN010000142 DAJVUN010000000
VERSION     DAJVUN010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10128
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.142"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..1380)
                     /locus_tag="OQQ76_003058"
     CDS             complement(<1..1380)
                     /locus_tag="OQQ76_003058"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HCS1969463.1"
                     /translation="MSQIHKHTIPANIADRCLINPQQYEAMYQQSINVPDTFWGEQGK
                     ILDWIKPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDG
                     SQSKHISYKELHRDVCRFANTLLELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS
                     VIFGGFSPEAVAGRIIDSNSRLVITSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVV
                     VLKRTGGKIDWQEGRDLWWHDLVEQASDQHQAEEMNAEDPLFILYTSGSTGKPKGVLH
                     TTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVP
                     NWPTPARMAQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLHILGSVGEPINP
                     EAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATEGSLVITDSWPGQARTLFGD
                     HERFEQTYFS"
     gene            1773..3209
                     /gene="nrfA"
                     /locus_tag="OQQ76_003059"
     CDS             1773..3209
                     /gene="nrfA"
                     /locus_tag="OQQ76_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HCS1969464.1"
                     /translation="MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNET
                     FAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVR
                     ETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGC
                     ADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF
                     DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHG
                     KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ
                     SINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM
                     HAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQ
                     IKAEKQDFIKTVIPQWEEQARKNGLLSQ"
     gene            3254..3820
                     /gene="nrfB"
                     /locus_tag="OQQ76_003060"
     CDS             3254..3820
                     /gene="nrfB"
                     /locus_tag="OQQ76_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418495.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HCS1969465.1"
                     /translation="MSVLRSLLTAGVLASGLLWSLNGITATPAAQASGDRYEVTQQRN
                     PDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEP
                     MYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRI
                     KICVDCHSDQRTNPNFNPASVPLLKEQP"
     gene            3817..4488
                     /gene="nrfC"
                     /locus_tag="OQQ76_003061"
     CDS             3817..4488
                     /gene="nrfC"
                     /locus_tag="OQQ76_003061"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HCS1969466.1"
                     /translation="MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDES
                     LCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVD
                     VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL
                     QAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKY
                     GEVSQ"
     gene            4485..5441
                     /gene="nrfD"
                     /locus_tag="OQQ76_003062"
     CDS             4485..5441
                     /gene="nrfD"
                     /locus_tag="OQQ76_003062"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HCS1969467.1"
                     /translation="MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQ
                     AGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFE
                     LYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
                     AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVH
                     RMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPM
                     LLKSWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA"
     gene            5461..7179
                     /locus_tag="OQQ76_003063"
     CDS             5461..7179
                     /locus_tag="OQQ76_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014640253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HCS1969468.1"
                     /translation="MDVFLPEVGFLALLLSLGVNVLTPLTAFAGVRLRWPAMMRLTCI
                     GILAQFALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLW
                     VLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEG
                     RDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAASARICWRWALPGW
                     SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRH
                     WSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGW
                     RARDGGPAVRFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPY
                     FNRATLPFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGIVVSSVSRQEISLN
                     LQPGQQVTLAGYTFRFERLDLQAKGNYTSEKAIVALFDHQQRIGELMPERRFYEARRQ
                     QMMEPSMRWNGIHDWYAVMGEKTGADRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWR
                     GRKRDE"
     gene            7172..7555
                     /gene="nrfF"
                     /locus_tag="OQQ76_003064"
     CDS             7172..7555
                     /gene="nrfF"
                     /locus_tag="OQQ76_003064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HCS1969469.1"
                     /translation="MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQQQALNIASQLRC
                     PQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQT
                     LVLWALPVVLLLLMALILWRVRAKR"
     gene            7552..8148
                     /gene="nrfG"
                     /locus_tag="OQQ76_003065"
     CDS             7552..8148
                     /gene="nrfG"
                     /locus_tag="OQQ76_003065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfG"
                     /protein_id="HCS1969470.1"
                     /translation="MKEPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVHAEYQRQRD
                     PLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL
                     RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY
                     AQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD"
     gene            8490..9803
                     /gene="gltP"
                     /locus_tag="OQQ76_003066"
     CDS             8490..9803
                     /gene="gltP"
                     /locus_tag="OQQ76_003066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate:proton symporter GltP"
                     /protein_id="HCS1969471.1"
                     /translation="MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPA
                     GDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITL
                     ANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEM
                     LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT
                     VANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYS
                     TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID
                     LSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
                     RTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ"
     gene            complement(9881..10128)
                     /locus_tag="OQQ76_003067"
                     /pseudo
     CDS             complement(9881..10128)
                     /locus_tag="OQQ76_003067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313087.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
BASE COUNT         2189 a         2582 c         2852 g         2505 t
ORIGIN      
        1 ggagaagtag gtctgttcaa aacgttcgtg atcgccaaac agcgtacgcg cctgacccgg
       61 ccaggagtcg gtgatcacca ggctgccttc ggtagcgcca ggcagtggcg tgatcatgaa
      121 accgccagtt tcggtctgcc accaggtatc gaccaccgga catttctcgt tgccgatttt
      181 tttccagtac cactcccacg cttccgggtt aattggctcg cccacggaac cgagaatgtg
      241 cagcgacgaa cggtcggtac cctcgatcgc tttatcgcct tccgccatca gcgcgcggat
      301 cgccgtgggt gcggtataga gaatattgac ctgatgcttg tccaccacct gcgccatacg
      361 ggcaggcgtc ggccagttgg gtacgccttc aaacatcagc gtggtcgcac cgcaggccag
      421 cgggccgtac agcaagtaac tgtgtccggt cacccagccc acatcggcgg tgcaccagta
      481 gatatcaccc ggatgataat caaagacata tttaaaggtc agcgccgcgt acaccagata
      541 accgccggta gtatgcagca caccttttgg cttaccggta gaaccggagg tgtagagaat
      601 aaacagcgga tcttcggcgt tcatctcttc cgcctggtgc tgatcgctcg cttgctcaac
      661 caggtcgtgc caccacaggt cgcgcccttc ctgccagtca attttcccgc cagtacgctt
      721 cagtaccacc acatgctcta cgctggtgac gttcgggttt ttcagcgcgt catcaacgtt
      781 tttcttcagc ggaatactgc gcccggcacg cacaccttcg tcggaagtga tcaccagtcg
      841 tgagttggaa tcaataatgc gcccggcaac ggcttccggc gagaagccgc cgaaaatcac
      901 cgaatgcacc gcgccaatgc gggcgcaggc cagcatcgca accgcggctt ccggcaccat
      961 cggcatataa atcgccacca catcaccttt tttaatgccc agctcgagca gggtattggc
     1021 gaagcggcag acgtcgcggt gcagctcttt atagctgata tgtttgctct ggctgccgtc
     1081 gtcgccttcc cagatgatgg cggtacgatc gccgttttct tgcagatggc ggtcaaggca
     1141 gtttgccgcc agattcagcg tgccgtcctc gtaccattta atggacacat taccgggggc
     1201 aaaggaggtg tttttcacct tctggtaagg tttgatccag tcaagaattt ttccctgttc
     1261 gccccagaag gtatcaggta cgttaataga ttgttgatac attgcctcgt actgctgagg
     1321 gtttatcagg caacggtctg cgatgttggc aggaatggtg tgtttgtgaa tttggctcat
     1381 gcttttgttc tccttgtaga atattaataa tatgtggcat aggcgttaaa tgtaggggta
     1441 ttggcagttt tgtttagtat ttgggcgaca gatcacgcaa aagtagaatt gtgcaaataa
     1501 acggcagggt aatttttgaa ggtcagcaac aaaagttgat taattctttg aggaacatgc
     1561 agttatgcat gctgttgaaa aagaggaaga tactgactaa ctctaaaatg gtattttaca
     1621 tgcacttaca attgattaaa gacaacattc acagtgtggt tatttgttac acataggggc
     1681 gagcaatgtc atgacagtgt aggtgcggtt actgtcgtga aaaacaataa aaaccgccat
     1741 tgcaacaatg gcgcaattcg gatgaagccc ctatgacaag gataaaaata aacgcacgcc
     1801 gtatcttcag cttattgatt ccttttttct ttttcacttc tgttcacgct gaacaaacgg
     1861 cagctcccgc aaaacctgta actgtggaag cgaagaatga aacctttgcc ccgcagcatc
     1921 ccgatcaata tctctcctgg aaagccacct cggaacagtc agagcgtgtt gacgccctgg
     1981 cggaagatcc acggctggtg atcctgtggg cggggtatcc cttctcgcgc gattacaaca
     2041 agccgcgtgg acatgccttt gctgtgaccg atgtgcgtga aaccctgcgt accggtgcgc
     2101 cgaaaaacgc tgaagatggt ccgctaccga tggcgtgctg gagttgtaaa agcccggatg
     2161 tggcgcgtct gatccagaaa gacggcgaag atggctactt ccacggtaag tgggcgcgcg
     2221 gcggcccgga aatcgtcaac aacttaggtt gtgccgactg ccataacacc gcctcaccag
     2281 agttcgccaa aggcaaaccg gagttaaccc tttcccgtcc gtatgcggct cgcgcgatgg
     2341 aagccattgg taaacctttt gagaaagccg gacgtttcga ccagcaatcg atggtttgcg
     2401 gtcagtgcca tgtggagtat tacttcgacg gcaaaaacaa agcggttaaa ttcccgtggg
     2461 atgacggcat gaaagtcgaa aatatggagc agtattacga caaaattgcc ttctctgact
     2521 ggactaactc cctgtcgaaa acgccaatgc tgaaagcgca gcacccggaa tatgaaacct
     2581 ggacagcggg cattcacggt aaaaacaacg tgacctgtat cgactgccat atgccaaaag
     2641 tgcagaacgc cgaaggcaaa ctctacaccg accataaaat tggtaatccg tttgataact
     2701 tcgcccagac ttgtgcgaac tgccataccc aggacaaagc tgccttgcaa aaagtggtcg
     2761 cggaacgtaa gcagtcgatt aacgacctga aaatcaaggt tgaagatcaa ctggttcacg
     2821 ctcacttcga agcgaaagca gcgctggatg caggcgcgac ggaagctgaa atgaagccaa
     2881 ttcaggacga tatccgtcat gcccagtggc gctgggatct ggcgatcgct tcccacggca
     2941 ttcatatgca cgcaccggaa gaaggtttac ggatgctcgg tacggcgatg gataaagcgg
     3001 cggatgcacg caccaaactg gcgcgcctgc tggcgaccaa aggcatcacc catgaaatcc
     3061 agatcccgga tatctcaacc aaagagaaag cccagcaggc cattggcctg aacatggaac
     3121 aaatcaaggc cgagaagcag gacttcatca aaacggtgat cccgcagtgg gaagaacagg
     3181 cacgtaaaaa cggtctgtta agccaataac cccgttccgc ctcgcaaggg gcggaaaaca
     3241 caatggagtg aatatgagcg tattacgttc gttattaact gctggggtgc tggcgtcggg
     3301 cctgttgtgg agcctgaacg gaattaccgc tacccctgcg gcgcaggcat ctggtgatcg
     3361 ctacgaagtt acccagcagc gtaacccgga tgccgcctgt ctggactgtc ataaaccaga
     3421 taccgaaggt atgcatggca aacatgcttc cgttatcaac ccgaataaca aattgccggt
     3481 cacctgcacc aactgtcacg gccagccatc accgcaacac cgcgaagggg tgaaagatgt
     3541 gatgcgcttt aacgagccga tgtacaaggt cggagagcag aacagcgtct gtatgtcctg
     3601 tcatctgccg gaacagttgc aaaaagcgtt ctggccgcac gatgtccacg taaccaaagt
     3661 ggcgtgcgcc agctgccatt ccctgcatcc acagcaagat acgatgcaga cgttaagtga
     3721 caaaggacgg attaagattt gcgtcgattg ccacagcgat cagcgcacca atccgaactt
     3781 taacccggcg tctgttccgt tgcttaagga gcagccatga cctggtctcg tcgccagttt
     3841 ctcaccggcg tcggcgtgct ggcagccgtc agcggcaccg cagggcgcgt ggtggcgaaa
     3901 acgttgaata tcaatggggt gcgttacggc atggtgcatg acgagtcgtt atgcatcggc
     3961 tgtaccgcct gtatggatgc ttgtcgagaa gtgaacaagg tgccggaagg cgtctcgcgc
     4021 ctgacgatta ttcgtagcga gccgcagggc gaatttcctg atgtgaaata tcgcttcttc
     4081 cgtaagtctt gccagcactg cgatcatgcg ccgtgcgttg acgtctgccc gaccggtgcg
     4141 tcttttcgtg atgccgctag cgggattgtc gatgttaatc ctgatctctg cgtcggttgt
     4201 cagtactgca tcgccgcctg tccgtaccgc gtgcgcttta tccatccggt cacgaagacg
     4261 gcggacaaat gcgatttctg ccgtaaaacc aatttgcagg ccggtaagct gcccgcgtgc
     4321 gttgaggctt gcccgacgaa ggcgctgacg tttggcaatc tggacgatcc taacagtgag
     4381 atttcgcaac tgctgcgcca gaagcctact taccgctaca agctggcgct gggaaccaaa
     4441 ccgaagctgt accgcgtacc gtttaaatac ggggaggtga gccaatgacg cagacttccg
     4501 catttcattt tgaatcgctg gtgtgggact ggccgattgc catctacctg tttttgattg
     4561 gtatttctgc cggtctggtg acgctggccg tgctgttacg tcgcttctac ccgcaggcgg
     4621 gcggtgcaga cagtacgttg ctgcgcacca cgctgattgt cgggccgggc gcggtgatcc
     4681 tcggtctgtt gatcctcgtc ttccacctga caagaccgtg gaccttctgg aagctgatgt
     4741 tccactacag ttttacctcg gtgatgtcga tgggggtgat gctgtttgag ctttacatgg
     4801 tggtgctggt gctgtggctg gcgaaaatct ttgaacatga tttgcttgcc ctgcaacaac
     4861 gctggttgcc gaagctgggg atcgtgcaaa aggttctgag cctgctgacg cccgttcatc
     4921 gcggactgga aacgctgatg ctggtgttgg cggtgctgct gggggcttat accggctttc
     4981 tgctgtcggc gctgaaatcg tatccgttcc tcaataaccc gatcctgccg gtgctgttcc
     5041 tcttctccgg catctcgtcc ggtgcggcgg tggcgctgat cgccatggcg atacgccaac
     5101 gcagtaaccc gcattccacg gaagcgcact ttgttcaccg gatggaaatc cccgtggtat
     5161 ggggtgaaat cttcctgctg gtggcgtttt ttgtcggtct ggcgctgggc gatgacggta
     5221 aagttcgtgc gctggtggcg gcattaggtg gcggtttctg gacgtggtgg ttctggcttg
     5281 gtgtcgccgg gctggggctg attgtgccaa tgttgctcaa atcgtgggtc aatcgcagtt
     5341 ccggcattcc tgccgtgctg gcggcgtgtg gggccagtct ggtcggcgtg ttgatgctgc
     5401 gctttttcat tctctacgcc ggacagttga cggtggcgta agccagaaaa gaggtggttt
     5461 ctggacgtat tccttcctga agtcggtttt ctggcgttgt tgttaagtct cggggtcaac
     5521 gtgttgaccc cgttgacggc ctttgcggga gtgcggttgc gctggcctgc catgatgcga
     5581 ctcacttgca tcggcattct ggcgcagttc gcgctcctgc tgctcgcctt tggcgtactg
     5641 acgtattgtt ttctcatcag cgatttctcg gtcatttatg tcgcccaaca tagctacagc
     5701 ctgctgtcgt gggaactcaa actggcggcg gtgtggggcg gtcatgaagg ttcgctgctg
     5761 ctttgggtgc tgctgctttc cgcctggagc gcgctgtttg cctggcatta tcggcagcaa
     5821 accgatccgc tatttccgct gacgctagcc gttttatctc tcatgctcgc cgcactgcta
     5881 ctgtttgtgg tgctgtggtc cgatcccttc gtgcggatat ttccaccagc aatcgaaggc
     5941 cgcgatctca atccgatgct gcaacatccc ggtcttatct ttcatccacc gctgctttac
     6001 cttggctatg gcggtttgat ggtagcggcg agcgtggcgc tggcgagtct actgcgcggc
     6061 gagtttgatg cggccagcgc ccgaatttgc tggcgctggg cgttacctgg ctggagtgca
     6121 ttaacggcgg ggatcatcct cggttcctgg tgggcctact gcgaactcgg ctggggcggc
     6181 tggtggttct gggatccggt ggaaaatgcc tctttattac cctggctttc tgccactgcg
     6241 ctgctgcaca gtttatccct gacacgccag cgggggattt ttcgccactg gtcgctgtta
     6301 ctggcgatag ttactctgat gctgtcgctg ctgggcacct taattgtccg ttctggcatt
     6361 ctggtttcgg ttcatgcgtt cgcgctggat aacgtccgcg ccgtgccgtt gttcagcctg
     6421 tttgcactga ttagccttgc gtctctggct ctgtatggct ggcgagcgcg ggacggtggc
     6481 ccggcggtgc gtttttcggg gttatcgcgg gaaatgttaa tcctcgctac gctgttgctg
     6541 ttttgcgcag tgctactgat cgtgctggtg ggaacgcttt atccgatgat ttacggtctg
     6601 ctgggctggg gacgcctctc cgttggcgcg ccgtatttta accgcgcgac gttaccgttt
     6661 ggtctgttga tgctggtggt gattgtgctg gcgacgtttg tctctggcaa acgcgtgcag
     6721 cttccggcgc tggtagctca tgcgggcgtg ctgttatttg ccgctgggat cgtggtttcc
     6781 agcgtcagcc gtcaggagat cagcctgaat ttacagccgg gtcagcaggt gacgctggca
     6841 ggatatacct tccgttttga gcgcctcgat ctgcaagcca aaggcaatta caccagcgaa
     6901 aaagcgatag tggcactgtt tgaccatcag caacgcattg gtgaactgat gccggagcgg
     6961 cgtttttacg aagcacgtcg tcagcaaatg atggaaccgt caatgcgctg gaacggcatc
     7021 catgactggt atgcggtcat gggtgaaaaa accggagcgg atcgttacgc ttttcgcttg
     7081 tatgtacaaa gcggtgtgcg ctggatctgg gggggaggat tgttgatgat tgcgggcgca
     7141 ttgttaagcg gatggcgggg gaggaagcgc gatgaataaa ggacttctca cgctactgct
     7201 gttatttacc tgttttgcgc gcgctcaggt cgtagacacc tggcaattcg ccaatccgca
     7261 acaacagcaa caggcgttaa atattgccag ccagttacgt tgtccgcagt gccagaatca
     7321 aaacttactg gaatccaacg cgccggtggc agtcagtatg cgccatcagg tttacagcat
     7381 ggtggcggag gggaagaacg aagtcgaaat cattggctgg atgaccgaac gctacggaga
     7441 ttttgttcgc tataacccac cgttaacggg tcagacgctg gtgttgtggg cgctgccagt
     7501 ggtgttgtta ctgctgatgg cactgatcct ctggcgagtg agggcgaagc gatgaaagag
     7561 cccaaaatac cggtgaaaat gctgacaaca ctcacgattt tgatggtatt tctctgtgtc
     7621 ggcagttatc tgttaagtcc aaaatggcag gcggtacatg cggaatatca gcgtcagcgc
     7681 gatccgctac atcagtttgc cagccagcaa accccggaag cgcagcttca ggcattgcag
     7741 gataaaatcc gcgctaatcc acaaaacagc gaacaatggg cgttactggg cgagtactat
     7801 ctgtggcaaa acgattacag caattcgctg ctggcgtacc gtcaggcgtt gcaactacgt
     7861 ggtgagaacg ctgaactgta tgcggcgctg gcgacggtgc tttattacca ggccagccag
     7921 catatgaccg cccagactcg cgcaatgatc gacaaagccc tcgcgctgga ctctaacgaa
     7981 atcaccgctc tgatgctgct ggcttccgat gcgtttatgc aggcgaatta cgcgcaagcc
     8041 atcgaactat ggcaaaaagt gatggatctc aactcacccc ggatcaaccg gacacagctg
     8101 gtcgagtcga ttaatatggc gaaattgttg cagcggagat cggattaatc atctggtgat
     8161 gaagattatg ttattgagct gcataaaaaa taatcgaatg aacatatgcc aaaaataatc
     8221 actaatcagt attattgcag attaaacaaa taaaaatctt tccataacaa atggttattc
     8281 attaatcctg acataaactc gcgttattat gcattaatgc agcgaaaagc tctgttgtta
     8341 aagggttgcg caacataccg cgcaaatgat actgatcata agcgttaaaa aaatctacaa
     8401 accaacgcaa cacaattcat gccctggcag tatgtcacgt tctcgcgttt ctgaacgggg
     8461 aacggcgctc cattgaggaa gttattctga tgaaaaatat aaaattcagc ctggcctggc
     8521 agattctgtt tgctatggtg ctgggcattc tcctgggaag ctacctgcac taccatagcg
     8581 acagccgcga ctggctggtc gtcaatttgc tctctccggc gggtgatatc ttcatccatc
     8641 tgattaaaat gattgttgtg ccgattgtga tctccacgct ggtggtgggt atcgcgggtg
     8701 tgggtgatgc caaacagctc gggcgtattg gcgcgaaaac cattatttac ttcgaggtga
     8761 tcaccaccgt cgccatcatt ttggggatca ctctggcgaa cgtcttccag cccggtgccg
     8821 gggtggatat gtcgcagctg gcgaccgtcg atatctcgaa atatcagagc actacggaag
     8881 cggtacaaag cagttcccac ggcattatgg gcacgatttt gtcgctggtg ccgacgaaca
     8941 ttgtggcgtc gatggcgaaa ggcgaaatgc tgccgatcat cttcttctcg gtgctgtttg
     9001 gtctggggct ttcctccctg cccgcgacgc atcgtgaacc gctggtgacc gtgttccgct
     9061 ccatctctga aaccatgttt aaagtgactc acatggtgat gcgttatgca ccggtgggtg
     9121 tgtttgcgct gattgcggtg acggtggcta actttggttt ctcttctctg tggccactgg
     9181 cgaaactggt gctgctggtg catttcgcca ttctgttctt cgcgctggta gtgctgggaa
     9241 ttgtggcgcg cctgtgcggg ttaagcgtct ggatcctgat tcgtattctg aaagatgagc
     9301 tgattctggc gtactccact gccagctctg aaagcgtact gccgcgaatt attgagaaga
     9361 tggaagccta cggagcaccg gcgtcgatca ccagcttcgt ggtgccgacc ggttactctt
     9421 ttaaccttga tggttcgacg ctgtatcaaa gtattgccgc tattttcatc gctcagctgt
     9481 atggcattga cctgtccatc tggcaggaaa tcattctggt gctgacgctg atggtgacct
     9541 cgaaagggat tgctggcgtg ccgggcgtgt cgtttgtggt gttgctggca acgctgggta
     9601 gcgtaggtat tccgctggaa ggtctggcgt ttattgctgg tgttgaccgt atcctcgaca
     9661 tggcgcgtac tgcgctgaac gtggtgggta atgcgctggc ggtgctggtg attgccaagt
     9721 gggaacacaa atttgaccgc aaaaaggcgc tggcttatga gcgtgaagtg ctgggcaaat
     9781 ttgataaaac tgcggatcaa taattgaaga ttgccggggt tatccacccg gcaatgtgtg
     9841 gatgcctgat gtgacgctgg tgcgtcttat caggcctacc ttaaccgttg gttaattttt
     9901 caaactcttc acaccggtat caaacccttc catacagctc aggttcaacc agtgcagcgc
     9961 cttttgtttg ttcttctcga taaaaccttc ttcaccgttt aagaacatca ttcccgccca
    10021 gtactcggaa taaccggttc gggaaattgc agagctgcgt ttgaaatacc aggttgcctt
    10081 gtcatcgtcg gtcttaatgc ccacgccgtt ggcgtaaatc aaaccaag
//
LOCUS       DAJVUN010000143        10117 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.143, whole genome shotgun sequence.
ACCESSION   DAJVUN010000143 DAJVUN010000000
VERSION     DAJVUN010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10117
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.143"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            206..358
                     /gene="hokA"
                     /locus_tag="OQQ76_003068"
     CDS             206..358
                     /gene="hokA"
                     /locus_tag="OQQ76_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokA"
                     /protein_id="HCS1969472.1"
                     /translation="MPQKYGLLSLIVICFTLLFFTWMVRDSLCELHIKQGRYELAAFL
                     ACNLKE"
     gene            complement(545..757)
                     /gene="cspA"
                     /locus_tag="OQQ76_003069"
     CDS             complement(545..757)
                     /gene="cspA"
                     /locus_tag="OQQ76_003069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone/antiterminator CspA"
                     /protein_id="HCS1969473.1"
                     /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS
                     LDEGQKVSFTIESGAKGPAAGNVTSL"
     gene            complement(1038..1328)
                     /locus_tag="OQQ76_003070"
     CDS             complement(1038..1328)
                     /locus_tag="OQQ76_003070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator"
                     /protein_id="HCS1969474.1"
                     /translation="MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKG
                     TGLKIDDFARVLGISVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME"
     gene            1761..2471
                     /locus_tag="OQQ76_003071"
     CDS             1761..2471
                     /locus_tag="OQQ76_003071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3053 domain-containing protein"
                     /protein_id="HCS1969475.1"
                     /translation="MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNT
                     VMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ
                     DYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQTDDLKPVFDQAFTKVVTTP
                     ADALQPLIPVAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLP
                     AQHQAFNQAWTTAVTATQ"
     gene            complement(2521..3495)
                     /gene="ghrB"
                     /locus_tag="OQQ76_003072"
     CDS             complement(2521..3495)
                     /gene="ghrB"
                     /locus_tag="OQQ76_003072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312465.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrB"
                     /protein_id="HCS1969476.1"
                     /translation="MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFA
                     EAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTET
                     VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMAL
                     AQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLF
                     GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS
                     MANVVAVPHIGSATYETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD"
     gene            complement(3599..4258)
                     /locus_tag="OQQ76_003073"
     CDS             complement(3599..4258)
                     /locus_tag="OQQ76_003073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family lipoprotein"
                     /protein_id="HCS1969477.1"
                     /translation="MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLDSL
                     VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS
                     GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
                     NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP
                     L"
     gene            4411..6744
                     /gene="bisC"
                     /locus_tag="OQQ76_003074"
     CDS             4411..6744
                     /gene="bisC"
                     /locus_tag="OQQ76_003074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418007.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin sulfoxide reductase"
                     /protein_id="HCS1969478.1"
                     /translation="MANSSSRYSVLTAAHWGPMLVETDDETVFSSRGALATGMENSLQ
                     SAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIR
                     EAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV
                     GGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNESDEQGLSYFSALRDSGKKL
                     ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYA
                     VFASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQFGE
                     QKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGSDAVDK
                     IPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL
                     VVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDF
                     DVFAELSERWEKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQL
                     IEMPENPDSERFIRFADFCRDPQAHPLKTDSGKIEIFSQRIADYAYPDCPGHPMWLEP
                     DEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPATIHPDDALARGIQD
                     GDTVRLWNARGQILAGAVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDL
                     PSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS"
     gene            complement(6713..7153)
                     /locus_tag="OQQ76_003075"
     CDS             complement(6713..7153)
                     /locus_tag="OQQ76_003075"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCS1969479.1"
                     /translation="MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAY
                     LANAQNWVWEEDSKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKAMMQYVQQRHPHLML
                     EVYQKNQPAINFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL"
     gene            complement(7150..7713)
                     /gene="tag"
                     /locus_tag="OQQ76_003076"
     CDS             complement(7150..7713)
                     /gene="tag"
                     /locus_tag="OQQ76_003076"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HCS1969480.1"
                     /translation="MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGL
                     SWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY
                     LQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTT
                     ICYSFMQACGLVNDHVVGCCCYPGNKP"
     gene            7871..8569
                     /locus_tag="OQQ76_003077"
     CDS             7871..8569
                     /locus_tag="OQQ76_003077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1969481.1"
                     /translation="MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGHS
                     TERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQ
                     VTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSSLGWRVDSRLGDLRPWAQI
                     SYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN
                     NSDYLYTMGVSARF"
     gene            8797..9999
                     /locus_tag="OQQ76_003078"
     CDS             8797..9999
                     /locus_tag="OQQ76_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969482.1"
                     /translation="MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAP
                     VSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMML
                     WLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE
                     TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWM
                     LAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDK
                     IARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFG
                     LNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQ
                     KMLREAHI"
BASE COUNT         2432 a         2433 c         2585 g         2667 t
ORIGIN      
        1 tttttttagg attatatcaa ggagaagaaa caaacttatt aagctagaat agctacgggt
       61 gcttgagact gtttgtctca ggtattcacc gaaaggcaga cagagaaaag ccccacctga
      121 ctataaatca aagtgaggct accctatgcc tgaacaccat aaggttagcc tcttactcgt
      181 tggaaatcaa cacagggggc tgggaatgcc gcaaaaatac ggattacttt cattaatagt
      241 gatttgtttc acgcttttat ttttcacctg gatggtaaga gattcactgt gtgaattgca
      301 tattaaacag gggcgttatg agctggcggc atttttagcc tgcaatttaa aagagtaaga
      361 gtcttcggcg ggaaattatt cccgcctttc ttacggcgtt gcgcattctc attgcaccca
      421 catttattct tcacaaaaat aataatagat tttactacgc gatcgattat ttatttcctg
      481 aaaaaaaata aaaaaatccc cgccaaatgg cagggatctt agattctgtg cttttaagca
      541 gagattacag gctggttacg ttaccagctg ccgggccttt agcgccgctt tcgatggtga
      601 aggacacttt ctgaccttcg tccagagatt tgtaaccatc gttctggata gcagagaagt
      661 gtacgaacac atctttagag ccatcgtcag gagtgatgaa gccgaagcct ttgtcagcgt
      721 tgaaccattt tacgatacca gtcattttac cggacatagt gtattacctt taataattaa
      781 gtgtgccttt cggcgatatg gcgtgcttta cagattttga agcgttaaag gaatgtgcac
      841 tacgaggggt atcaacgata actcttgaag ggacttgcct tactacactg ctttaatggt
      901 ctgtacgtca aaccgttgat gtgcattaag ccacgcattg gcgggtgatg caacaattat
      961 ttttcatatt tatgattaat cggttggaaa acggtcctgt catcaggacc gtaaacagca
     1021 ataaagtgga taaaagtcta ttccatcaac tgcttactta atgccgggtt ggcttgaatc
     1081 aaacgcatca attttagttc ggcacttgaa ggcttcacgc gtctggattc ccattccttt
     1141 accatggcga ctgatatgcc caaaacccgg gcgaaatcat cgatttttaa ccctgtccct
     1201 tttcgtaact gctcaatttc ggtacaggac gttgttctgt gcgtcagggt aattttctgc
     1261 gtttcatctt taaaaacaat ctgttccagg ctgctcaaca gctcatgcat tggatcttta
     1321 tattccattg aaaactcctc aaatcacact gcgggatcgt gaattgcatc gaagctcatt
     1381 aagaatagtc gggaaaagca gacacagcgg ggtgaagtca gggcatgctc tggctatgat
     1441 tcgattcagc cagtcattta gcgtgactta tagccaccta acgatctgat aaatgccgat
     1501 atatctctta ccactcctgt tttgtaaaga tttcgaaaat ctaaagttct gcgaaggcgt
     1561 aaatctcggg ctacaaaaaa gcaacggcaa tatcattttt taacaatgaa acaacaaatt
     1621 aaccttgttt cattttctcc atgattttac caggaagatt acgtagaaag ggtatcctgc
     1681 aagcctgtcc tggactatcc ttgtcacgtc agacacgcgt gtgtcgttgt gcgctttttt
     1741 tgggtaaaag gagtaagaaa atggcgacag gaaagtcctg ctctcgctgg tttgcgcctc
     1801 ttgcggcgtt attaatggta gttagcctga gtgggtgttt tgataaagaa ggcgatcagc
     1861 gtaaagcgtt tatcgacttc ctgcagaata cagtgatgcg tagcggtgaa cgtctaccaa
     1921 ccctgactgc cgatcagaaa aaacagtttg gtccttttgt ctctgattac gcgattctgt
     1981 atggttattc tcagcaggtg aatcaggcga tggattccgg tctgcgcccg gtcgtagaca
     2041 gcgttaacgc aattcgcgta ccgcaggatt acgttacgca aagcggtccg ctgcgtgaaa
     2101 tgaacggttc gctgggtgtg ctggcgcaac aactgcaaaa tgcgaagttg caggccgatg
     2161 ctgcgcactc tgcgctaaaa cagaccgatg atttgaaacc ggtctttgat caggcattca
     2221 ccaaagtggt aacgacgcca gctgatgcat tgcaaccgtt gattccggtt gcacaaactt
     2281 tcacgcaaca actggtgatg gttggagact acattgctca acaaggtact caggtgagct
     2341 ttgtagcaaa tggtatccag ttcccgactt cgcagcaggc aagtgaatat aacaaactga
     2401 ttgcgccgtt accggcacaa catcaggcgt ttaatcaggc ctggactaca gcagttactg
     2461 caacccaata aagagtaaaa gcccgagcga ttatcgggct ttacttcacg cagtcgcggc
     2521 ttagtccgcg acgtgcggat tcacacagtt cttctcaacc tttccttgta acgcatcaat
     2581 caaattatcc acggcacagg cggccatgcc ataacgcgtc tcataggtgg cagatccaat
     2641 atgcggtact gcgacgacgt tggccattga gagcaacggc gaatctacgg acagtggctc
     2701 ttgttcgaag acatccagcc cggcggcgtg aatttcgcct ttctgcaatg ctgcgatcag
     2761 tgcattttcg tcaaccaccg ggccacgtcc ggcattaatg aaaatggcgg aggatttcat
     2821 tttggcgaat tgttctgcgc caaacagatg atgcgtctca tcagttaacg gcaggatcag
     2881 gcaaacgaaa tctgactctt gtaacagagt atccaaatcg cagtagcggg cgttgaagcg
     2941 ttcttctgct tctttatggt ggcggcgcgc gttatagagg atgggcatgt tgaagccaaa
     3001 gtgcgcacgt tgtgccagcg ccatgccgat ccgtcccatc ccgacaatgc ccagtgtttt
     3061 atggtgaacg tcagtgccgt accagtccgg gcctatgctc gcggtccatt cgcctgcttt
     3121 tacccgttct gctacctcca caacccgacg agcggtagac aacaccagcg ccatcagcgt
     3181 atcggcgacg gtttctgtta atacggttgg cgtgtgcatc agcagaattt ttcgggcggt
     3241 aagcgcatcg acatcaaaat tgtcatagcc gacggagatc gttgatgtgg cacgcagttt
     3301 cggcattttt tccagcaatg cggcatctac attctcgttt gaacccagta aaccttcagc
     3361 ttcggcaaaa attgctgcat tttgttcgac ggtttgtggg ctgaggtttg ccacctggtg
     3421 aacggtgaaa tgctcttgca ggcgttgcag taaatcatca ggtaaggctt tgtagaggat
     3481 aacggacggc ttcatgcttc tctccattca ctgataaggc gctcacctta gcctgaaata
     3541 tgatgaagga aaactgaaga atgccaggtg atttctgcat cacctggcat gaaagggatt
     3601 acagcgggct taaggtaatt tctacacggc ggttttgcgc cttaccttct gcggtgctgt
     3661 tgctggcgat tgggttagcc gggccaaggc cctgagtacg gatgcggctg gcgtccacgc
     3721 cctgggtgat caacgcgctg gcaacagaat ccgcacgctg ctgggagaga cgcatgttca
     3781 ggtcgtgacc ccccgtgctg tcggtataac caatcacgtt aaccgccgtt ttcggatact
     3841 ctttcagcac cattgccacg ccggtcaggg tgttagcgcc tgccggtttc agggtcgcgc
     3901 tgctgctgtc gaaggtcaca ttgttcggca tattgaggat aatgttatcc ccgctgcggg
     3961 ttacgctaac acctgtgccg cgcattttgt cacgcagctt cgcttcctgc acatccatgt
     4021 aataacccac gccgccgccc agagctgcgc ctgctgctgc gccaatcagc gcgcctttac
     4081 cgcgatcttt cttcgaagaa gagagcgcac caatacccgc gcccacgaga gagtccagac
     4141 ctgcgccgat agcagatttg cctgcttcgc gttcgccggt gtaagggtta gttgtgcagc
     4201 cagataccgc cagagcgcca ctcactacgg cggcaataag ataaacacgt ttcttcattg
     4261 ttaatcctta ataacctttt tattctttgc cacgggttcc gtggcgggag attatgccgc
     4321 gtgaacatga agattattcc tgggaatact cggaaatttg taagtaatat ttaactgctc
     4381 aatacatcta acctttcagg agtcttcggt ttggccaact catcctcacg atattccgtt
     4441 ctgactgccg cccactgggg gcccatgctg gttgaaaccg acgacgaaac cgtgtttagc
     4501 tcgcgtggcg cgttagccac aggaatggaa aactccttgc agagcgcggt tcgcgaccag
     4561 gttcacagca atacgcgggt acgatttcca atggtgcgca aaggctttct cgcgtcaccg
     4621 gaaaacccgc aaggcattcg tgggcaggat gaatttgttc gcgtgagttg ggatgaggcg
     4681 ctggatctta ttcaccaaca acataaacgc attcgtgagg cttatggtcc ggcatcgatt
     4741 tttgctggtt cctacggctg gcgttcaaac ggcgtgctgc ataaggcctc gacattatta
     4801 caacgctata tggcgctggc aggcggttat accgggcatc tgggggatta ttcgaccggt
     4861 gcggcacagg cgatcatgcc gtatgtcgtg ggtggcagcg aagtttatca acagcaaacc
     4921 agttggccgc tggtgctgga acatagcgat gtcgtggtgt tgtggagtgc taacccactc
     4981 aatacgctga aaattgcgtg gaatgaatct gatgagcagg ggctttctta cttttccgca
     5041 ctgcgtgaca gcgggaaaaa gctgatctgt attgatccaa tgcgatcgga aaccgtcgat
     5101 ttctttggcg ataaaatgga gtgggtggca ccgcacatgg gcaccgatgt tgcgctgatg
     5161 ctggggatcg cccatacgct ggtggaaaat ggttggcacg acgaagcgtt tctggcgcgt
     5221 tgcaccacag gttatgccgt cttcgcctct tatttgctgg gcgagagtga cggaatagcc
     5281 aaaaccgccg aatgggcggc agggatttgt ggggttcacg cagcgaaaat tcgcgagttg
     5341 gcggctcttt tccaccaaaa cacgaccatg ctgatggctg gctggggaat gcagcgccaa
     5401 cagtttggtg agcaaaaaca ctggatgatc gtcacgctgg cggcaatgtt ggggcaaatc
     5461 ggcacacccg gcggcggttt tggtctttct tatcattttg ccaatggtgg taatcccacg
     5521 cggcgttctg cggtgctctc ttccatgcag ggtagcttgc cgggtggcag cgatgcggta
     5581 gataaaatcc ctgttgcccg tattgttgaa gcactggaaa accctggctg cgcataccaa
     5641 cacaatggca tgaatcgcct cttcccggat attcgcttta tctggtgggc gggtggcgcc
     5701 aacttcaccc atcatcagga cactaatcgc ctgatacgag cttggcaaaa accggagctg
     5761 gtagttatct ccgaatgctt ctggacggcg gcggcaaaac acgcggatat cgttctgcct
     5821 gcgactacct cttttgagcg taatgatctc accatgaccg gcgattacag taatcagcat
     5881 ctggtgccga tgaagcaagt ggtgccgcca cgctatgaag cgcgtaatga ttttgatgtt
     5941 tttgccgagt taagtgaacg ctgggagaag ggcggttatg cacgttttac ggaaggaaaa
     6001 agtgagttgc aatggctgga aacgttttat aacgttgccc gacagcgcgg ggcaagccag
     6061 caggttgaat tgccgccatt tgctgagttc tggcaagcca atcagttaat tgagatgccg
     6121 gaaaacccgg acagcgagcg gtttattcgc ttcgctgatt tttgccgcga tccgcaggcg
     6181 catccattaa aaaccgacag cggtaagatt gaaatcttct cgcagcgtat tgccgattac
     6241 gcttatccgg attgcccggg gcatccaatg tggctggagc cggacgaatg gcagggcaat
     6301 gccgaaccgg aacagttaca ggtactttct gctcatccgg cgcatcgtct gcacagccag
     6361 ctgaattaca gttctctgcg cgaattgtat gcggtggcaa atcgtgagcc tgccaccatt
     6421 catcctgacg atgccctggc gcgcggcatt caagatggcg atactgttcg gctgtggaac
     6481 gcacgcgggc aaattcttgc cggagcggtc attagcgagg gaattaaacc tggcgtgatt
     6541 tgtattcacg aaggggcatg gccggatttg gatttaaccg ctgacggtat ttgtaaaaac
     6601 ggcgcagtca acgtgctgac caaagatctc cccagctcgc ggctggggaa tggctgtgcg
     6661 ggtaatacgg cgctggcatg gctggaaaaa tacaacggtc cggaactgac acttacagcg
     6721 tttgaaccac cggccagctc ataatccagg tgggtagttg ggtttcatcc tgccatgcgc
     6781 aatcgacaat gtgaaaaccc tgcgcctggt aaaaatttat cgccggttga tttttttgat
     6841 aaacctccag catcaggtgg ggatggcgct gctgcacata ttgcatcatc gccttaccaa
     6901 taccgcgcct gacggccttc ggtgcgacaa acatcgctgc cagaaatcgg ccttccataa
     6961 tgctgacaaa accgagaagc ttactgtctt cttcccagac ccagttttgc gcattggcaa
     7021 gatacgcatc ccgcaccagc ggaatgcaat cacgccagta attcgctttt ataaagggat
     7081 gtccccaggt tgtactttcc agccacagtt cgaggatcgc ggggagttct gaacgttgcg
     7141 cttcccgaat catggtttat ttcccggata gcaacagcag ccaaccacat gatcattcac
     7201 cagcccacat gcctgcataa aggagtaaca gattgtggta ccgacaaact taaaaccacg
     7261 ttttttcagt gctttagata gggcgtcgga ggcgggcgta gatgtgggga tttcgctcaa
     7321 cgttgtggct tgtgtcacct gtggctgatg atttacaaac gaccagacaa agtcggcaaa
     7381 cggttcgccg ttctgttcca tttgcaggta cgcccgcgca ttaccaataa ttgcctgaat
     7441 tttcccgcga tggcggataa tcccggcgtc ctgtaccagt ctttctacat cctcttcctg
     7501 cattgctgcg accttcaccg gatcgaactg atgaaagcag gcgcgatagt tttcgcgttt
     7561 tttgaggacg gtgatccacg ataacccagc ctgctgccct tcaaggcaga tcatttcgaa
     7621 cagtttttta ctgtcagttt caggcacgcc ccactcatta tcatggtagg caatataaag
     7681 cgggtcctga ctcacccagc cgcaacgttc catactttcc ctcgctatgt acccgatcgt
     7741 aaaaatttca gccgcttttc ttgacgcatc ggtgaaaaag tcaatattta atacagggct
     7801 actatgcccg atatccttca tacaatgaca ataatattgc cgaattcggc tcttccctgg
     7861 agtcgtgtta atgatcataa aaaaaagcgg tggtcgctgg cagctaagcc tgctggcgag
     7921 cgtggtaatc agtgcctttt ttctcaacac agcttacgcc tggcaacaag aatatatcgt
     7981 tgatacgcaa cccggacatt ccacagagcg ttacacctgg gatagtgatc atcaacctga
     8041 ttacaacgat attttgtcgc aacgtattca aagtagccaa agggcgctgg gactggaagt
     8101 caatctggcg gaagaaactc ctgtggatgt gaccagcagt atgagtatgg gctggaattt
     8161 tcctttatat gaacaggtta caaccggccc ggtcgcggca ttacattacg atggcacaac
     8221 cacctcgatg tataacgagt ttggcgacag tactaccacg ctgaccgatc cgttatggca
     8281 tgccagcgtg agtagcttag gctggcgtgt tgactcccgg cttggcgatc tccgaccctg
     8341 ggcgcaaatc agctataacc agcaatttgg cgagaatatc tggaaggcgc aatcaggcct
     8401 gagccggatg acggcgacaa accagaacgg caactggctg gatgtcaccg taggcgctga
     8461 tatgttgctc aatcaaaata ttgccgccta tgccgcgcta actcaggcag aaaataccac
     8521 taataatagc gactatctgt atacgatggg ggttagcgcc agattttaac gtaacagtca
     8581 caattgaaac cattgaataa caatagttgc ggtgatagtg ggtgctaact tacaaataat
     8641 aaatttggtg aataattgtc gcgtcattca ttcctgaact aaggcatttc attccgttct
     8701 gatggcattt catgccgttt ttccccaggc ataaaatgca cttcgttatg gttgtcggca
     8761 gagatttttc ctttttatta ctgcaggaat actgccatga caccttcaaa ttatcagcgt
     8821 acccgctggc tgacactcat cggtactatc attacccagt ttgcgctggg atcggtttat
     8881 acctggagtc tgtttaatgg cgcgctttct gccaagctgg atgcgccggt aagccaggtc
     8941 gctttctctt tcggcttgtt aagtctgggg ctggcaattt catcttctgt tgcggggaaa
     9001 ttacaggaac gttttggcgt taaacgcgtc actatggctt ccggcatttt gctaggatta
     9061 gggttcttcc tgacagcgca ttctgacaac ctgatgatgc tgtggttaag cgccggtgtg
     9121 ctggtcggtc tggcggatgg cgcgggttac ctgctgacgc tctctaactg cgtgaagtgg
     9181 ttcccggagc gtaaaggtct gatctccgcg ttcgctatcg gttcttatgg tcttggtagc
     9241 ctgggtttca aatttatcga cacgcagctg ctggaaacgg tgggtctgga aaaaacattt
     9301 gtgatttggg gagcgattgc gctggtgatg attgttttcg gcgcaacgtt aatgaaagac
     9361 gcaccaaaac aggaagtgaa aaccagcaat ggtgtggtgg agaaagatta cacgctggca
     9421 gagtcgatgc gtaaaccgca gtactggatg ttagcggtaa tgttcctgac tgcctgcatg
     9481 agcggcctgt acgtgattgg ggtagcgaaa gatatcgccc aaagtctggc acaccttgat
     9541 gtggtttccg cagccaatgc agtaacggtt atttccatcg ctaacctttc aggtcgtctg
     9601 gtgctgggca ttctgtctga caaaattgcc cgtatccgtg ttatcaccat tggtcaggtg
     9661 atttcgctgg tgggtatggc ggccctgctg tttgcaccat taaatgcagt gacgttcttt
     9721 gcagcgattg cctgcgtggc atttaacttt ggcggcacta ttaccgtctt tccatcactg
     9781 gtcagtgagt tcttcggcct caataacctg gcgaaaaact acggtgtgat ttacctcggt
     9841 ttcggtatcg gtagcatttt tggttcgatt atcgcctcac tgtttggcgg tttctatgtg
     9901 accttctacg tgattttcgc cctgctgatt ctgtcattgg cgctttctac gacgattcgt
     9961 cagccagagc agaaaatgtt gcgtgaggcg catatttaga aatatgttgc tactgaaata
    10021 aatacgagga gggagacttc aaagtctccc ttttttatgg acgcatatta aaagaacaat
    10081 aatattcata ccacaaatat attttattta tatatta
//
LOCUS       DAJVUN010000144        10004 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.144, whole genome shotgun sequence.
ACCESSION   DAJVUN010000144 DAJVUN010000000
VERSION     DAJVUN010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10004
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.144"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(272..1636)
                     /gene="tdcG"
                     /locus_tag="OQQ76_003079"
     CDS             complement(272..1636)
                     /gene="tdcG"
                     /locus_tag="OQQ76_003079"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1969483.1"
                     /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH
                     IVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA
                     HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLS
                     HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD
                     GIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG
                     AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC
                     IERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK
                     VVCG"
     gene            complement(1708..2097)
                     /locus_tag="OQQ76_003080"
     CDS             complement(1708..2097)
                     /locus_tag="OQQ76_003080"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enamine/imine deaminase"
                     /protein_id="HCS1969484.1"
                     /translation="MKKIIETQRAPGAIDPYVQGVDLGSMVFTSGQIPVCPQTGEIPA
                     DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY
                     PTRSCVQVARLPKDVKLEIEAIAVRSA"
     gene            complement(2111..4405)
                     /gene="tdcE"
                     /locus_tag="OQQ76_003081"
     CDS             complement(2111..4405)
                     /gene="tdcE"
                     /locus_tag="OQQ76_003081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-ketobutyrate formate-lyase/pyruvate
                     formate-lyase"
                     /protein_id="HCS1969485.1"
                     /translation="MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGD
                     ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV
                     GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD
                     MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL
                     EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG
                     GAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG
                     DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA
                     AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA
                     INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK
                     YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG
                     EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT
                     PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE
                     DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNIMNREMLLDAIEHPEKYPNLTIRVSGY
                     AVRFNALTREQQQDVISRTFTQAL"
     gene            complement(4439..5647)
                     /gene="tdcD"
                     /locus_tag="OQQ76_003082"
     CDS             complement(4439..5647)
                     /gene="tdcD"
                     /locus_tag="OQQ76_003082"
                     /EC_number="2.7.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate kinase"
                     /protein_id="HCS1969486.1"
                     /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF
                     LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDRVALIGHRIAHGGSIFTESAIITD
                     EVIDNIRRVSPLSPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP
                     WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS
                     VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS
                     SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI
                     RRLVMEHLAVLGVEIDTDMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHL
                     GKVNAPAEFA"
     gene            complement(5673..7004)
                     /gene="tdcC"
                     /locus_tag="OQQ76_003083"
     CDS             complement(5673..7004)
                     /gene="tdcC"
                     /locus_tag="OQQ76_003083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine transporter TdcC"
                     /protein_id="HCS1969487.1"
                     /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA
                     GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF
                     LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM
                     VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM
                     VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF
                     TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH
                     YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM
                     GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF"
     gene            complement(7026..8015)
                     /gene="tdcB"
                     /locus_tag="OQQ76_003084"
     CDS             complement(7026..8015)
                     /gene="tdcB"
                     /locus_tag="OQQ76_003084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HCS1969488.1"
                     /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI
                     FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK
                     VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA
                     GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA
                     SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR
                     NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA"
     gene            complement(8114..9052)
                     /gene="tdcA"
                     /locus_tag="OQQ76_003085"
     CDS             complement(8114..9052)
                     /gene="tdcA"
                     /locus_tag="OQQ76_003085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TdcA"
                     /protein_id="HCS1969489.1"
                     /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND
                     IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG
                     FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL
                     QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG
                     ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV
                     WSKNYRIKKAASVLVELAKEYSSYNGCRRRLLIEVG"
     gene            9241..9585
                     /gene="tdcR"
                     /locus_tag="OQQ76_003086"
     CDS             9241..9585
                     /gene="tdcR"
                     /locus_tag="OQQ76_003086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TdcR"
                     /protein_id="HCS1969490.1"
                     /translation="MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMS
                     KFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSS
                     DRTSFCECNRFP"
BASE COUNT         2692 a         2513 c         2279 g         2520 t
ORIGIN      
        1 ttctcgctca atattttgta gggcttatta tttttttccg agccgcatca aggcgatatg
       61 cggtctacgt ttttgcaggc gagttattag aataaagaaa tgatacgcgc gaggtcagag
      121 aaaatcttca caatcaagac tttgaaataa cggagatgga taagaatttt ctactaaatt
      181 aatcgcaaga gaatattcat tctctatttg cggcagatca caaaaaaaag gtgcacattt
      241 gtgcacccaa ggatgaaagc tgacagcaat gtcagccgca gaccacttta atggccagtc
      301 ctccgcgtga tgtttcgcgg tatttatcgt tcatatcttt gccggtttca tacatcgtct
      361 cgatcacttt atcgagtgaa acacgcggtg ccgaggtgcg gcgcatcgcc atccgcgcgg
      421 cgtttactgc tttcacggca ttaatggcat tacgttcaat gcacgggatt tgtacctgtc
      481 cggcaaccgg atcgcaggtc agcccaaggt tatgctccat cgcgatttcc gccgcattgc
      541 atacctgcgc cggactgccg cccagtagtt cagttaaccc tgccgccgcc attgaacagg
      601 ccacgccaat ctccccctga cagccgacct ccgcgccaga gatggaggcg ttcattttat
      661 acagcgcgcc aatagccccc gctgccagaa aatagcgggc aattgaccgc tcgtttaccg
      721 gacgacggaa cttatcgtaa taagccagca ctgccggaat aatgccgcac gcaccgttag
      781 tcggtgccgt taccacgcgc ccgccagctg cgttttcttc actaaccgcc agcgcgtaca
      841 tgttgatcca gtcgatgaca ttcatcggat cgttagagat gttatcgcta gaaaccagct
      901 gacgacgcag cgctacggca cgacgcggca cattgagcgg accaggcagc acgccttcag
      961 tgttcatccc gcgttcaata ccgtcatgca tcacttgcca gatacgggca aaccctgcgt
     1021 caatttccgc tttgctgcgc agcgccagct cgttgtgcat catcaggcca gatatagaca
     1081 ggccgttgta atcacacatt ttcagcagtt cacctgctga gtggaaatcg taaggtacgg
     1141 acgtttcgac atcgtgcgac aggccgaagt gttcttcttc gacaataaac ccgccgccga
     1201 cagagtaata ggttttactt aatagcgctt cctgtccctt ccaggcagtg atccgcattc
     1261 cgttctcatg gcgaggcaac atttcgggat ggaagataat gttctttgct acaggaaaat
     1321 caacaatatg cgcaccagat gccactggca gccgcccgct gcgcgttact aactctataa
     1381 atgcagggat ctcatcaatg acaacatcct gcggactgtt tcctgccagt cccatgataa
     1441 tggcgacatc cgtggcatgg cctttgcccg tcagtgacaa cgatccatac agatcgacca
     1501 caatatggct cgtcgcggtt aataagccgc tactttccag ccgatcaata aaactttttc
     1561 cggcattcat tggccccacg gtatgcgaac tggagggacc aatcccaatt ttgaaaatat
     1621 cgaatgcact aatcatatcc acaccctcgg attgccgttc agtgaagtgg agcggaacga
     1681 ccttgcgacc gtcccgctca cgaggcttta cgcactacgt actgcgatag cttcaatttc
     1741 cagcttcaca tctttcggca aacgcgcaac ctgcacacag ctccgggtcg ggtaggtcgc
     1801 ctgatgctca tcgaagaact gcttatagac ttcattgatg gtggcaaaat cattcagatc
     1861 ggtgatgaac acggtcatct tgatgatatc gcccacgctc agcccggcag caaccacgat
     1921 cgctttgacg ttttcgaggc ttaaacgcgc ctgatcttgc acatcagccg ggatctcacc
     1981 ggtctgcggg caaaccggaa tttgcccgga ggtgaagacc atgctgccta aatcaacgcc
     2041 ctgaacataa gggtcgattg cgcctggggc acgttgcgtt tcgataatct ttttcataca
     2101 tcctccggcg tcagagcgcc tgggtaaaag tacgtgaaat aacatcctgt tgctgttcac
     2161 gggtcagtgc gttgaagcgc acggcgtagc cagagacacg gattgtcagg ttaggatatt
     2221 tttccgggtg ctcgatggca tccagcagca tttcccgatt cattatgttg acgttgaggt
     2281 gttgaccgcc ttcgacatcc gcttcgtggt ggaaataccc atccagcagg ccgacaaggt
     2341 tggttttacg tactggatct tctttgccca gcgccgcagg aacgattgag aaggtgtacg
     2401 agatcccatc tttggcgtag gtgaacggca gtttcgccac cgacgtcaat gaggccacgg
     2461 cacctttgcg gtcacgacca tgcatcgggt tagcgcccgg cgcgaacggt gttccggcgc
     2521 gacgaccgtc cggcgtatta ccggttttct ggccgtacac cacgttagaa gtgatagtca
     2581 gaatcgactg ggtagggacg gcgttgcgat aggttggcag cgctttaatt ttcttcataa
     2641 agcgttcaac caggtcgcag gcaatgctgt ctacgcgctc gtcgttgttg ccgtactgcg
     2701 gatattcacc gtcgatttca aagtccaccg ccaggccgtt ttcgtcacgg attggtttca
     2761 cgcgggcata tttgatggca gacagggagt ccgtcgccac cgacaggccc gcgatgccgc
     2821 atgccatagt gcgatagaca tcacgatcgt gcagcgccat cagcgaagct tcgtagctgt
     2881 acttgtcgtg catgtagtga atgatattca gcgcgctgat gtactgcacc gccagccagt
     2941 ccatgaagtg atcgaggctg tccatcactt tgtcgtaatc cagcacgtcg tccatcagcg
     3001 gtgctgtttt cggcccgacc tgaatcttca gcttctcgtc caccccgccg ttaattgcgt
     3061 agagcagcgt tttcgccagg ttagcgcgtg caccaaagaa ctgcatttgc ttaccaatca
     3121 ccattgggct gacgcagcag gcaatcgcgt aatcgtcgct gttgaagtca gtacgcatca
     3181 gatcgtcatt ttcatactgc aaggaagagg tgacgatcga cacctgcgcg gcatattttt
     3241 tgaaggcaat cggtaattct tccgaccaaa gaatggtcag gttaggttcc ggtgccggcc
     3301 ccatagtgtg cagggtgtgc aaatagcgga aggagttttt ggtcaccagc gtacgaccgt
     3361 ccagccccat cccgccgatc acttccgtcg cccagattgg gtcgccggag aacagcgaat
     3421 caaattccgg tgtacgcagg aagcgtacca tacggatctt catgatgaag tgatcgatca
     3481 gttcctgtgc ctgctgctca ttgagtacgc cagctttaaa gtcgcgctca atgtagatat
     3541 cgaggaacga tgccgtgcgg cccagcgaca tcgcgccgcc attttgcgat ttcactgccg
     3601 ccagataagc gaagtagagc cactgcaccg cttcttgcgc attctgcgcc gggcgagaga
     3661 tatcaaagcc atatttcgcc gccatttcct gaatctgcaa cagcgcatga cgatgctctg
     3721 ccagctcctc acgcagacgg atggtggctt ccagatcctc gcctttttcc agacgagact
     3781 ggagatcggc aaattgcagt tcgcgttcac gtaccagata actgatgcca tacagcgcta
     3841 cgcggcgata gtcaccgata atgcgcccac ggccatagcc atctggtaaa ccggtcagca
     3901 cgccagattt acggcagcgc agcatatccg gtgagtaaac atcaaatacg ccctggttat
     3961 gggttttacg cagatcggta aacagatatt caaattcact gtccatttca cggccatagg
     4021 cgtggaatga acttttaatc atattaatgc caccgaacgg gtgtagcgca cgtttcaacg
     4081 gcgcatccgt ttgcaggcca acaatttttt ccagcggctg gttaatatat cccgcatcat
     4141 gagcggtaat tgtggtggca atattggtat cgaaatcaac cggcgcgtgg gttgcgtttt
     4201 cgatacggat accttccatt actttttccc acaattccgt ggtggcaggc gtcgcttcag
     4261 cgaggaaaga ttcatcgcct tcatacggtg tatagttatg ttgaataaaa tcgcggacat
     4321 taatttcgtt tttccagtcc gtacctttaa agccaagcca tgcgtcggcg tacagcttat
     4381 cgctggtatc aatatctacc ttcatgaaaa ataatctctc tacaatactt caactaaatt
     4441 atgcaaattc tgcgggcgcg ttaactttgc ctaaatgaat ggcatccaaa gcaatcattt
     4501 tttcttcgtt agtcggaata acagcgcaaa tgacacgcgc attttcactg gaaacaattc
     4561 gctcaccaca ggagttagag cgattattca tgtctgtatc aatctctacg cctaatacag
     4621 ccaaatgttc catgaccaga cgacgaatta agcttgaatt ctctcctatt ccgccggtga
     4681 atataattcc atccaggcga cgtaatgaag ctgcgtgtcc ggcaatatga cgggcaattc
     4741 ggtgaacaaa ggttttaatt gccagttgcg cgcgttcgtg accttcatgc caggcttttt
     4801 ccagaacacg taaatccgaa gaaagaccgg aaatacctaa taatcccgac tctttattca
     4861 ctacgcgttc caggtcaccc aagctctggt tggtttggct ggcgacccag gacatcgcac
     4921 caaaatcgac atcgccactg cgggtaccca tcatcaagcc ttccagcggc gtcattccca
     4981 ttgaggtgtc aacactctga ccgttgcgaa ctgcgcagat tgacgcgcca ttgccaagat
     5041 gcgccacaac caggccggag tcatcttccg ctagattcag caaagaatgt gcgcgctggg
     5101 aaacatagcg gtgcgacgtg ccgtggaaac cataacggcg tacacctaac tcttcataat
     5161 atttccacgg caggccgtat aaataagctt ccggagccat cgtctggtgg aaactggtat
     5221 caaataccgc cacctgagtt acgcccggaa ataattgctg cgccgattca ataccactta
     5281 aattggcgta attatgcagg ggtgacagtg gagaaacgcg acggatatta tcaatgacct
     5341 catcggtaat aatggcggac tcggtaaaaa tactgccgcc gtgagcgatg cggtggccaa
     5401 ttaaggccac tctgtcattt aaattccgtt tttccagttc aaatgcaatt gccttcaatg
     5461 caccttcgta gctgtggtga gccagcggtg ctggctctcc cccatttacg gataagaatg
     5521 cattttccga gttaataccg tcggcaatac ctgacattaa tacttcacag tcgctggcat
     5581 cgagtacgga aaacttaatc gaagacgaac cacagttaat aaccaaaaca accggaaatt
     5641 cattcatctc ttttctcatc ctgagttacg gattaaaaca gtttgtatac gatgttcagg
     5701 atggtcagca gaccaatcac ggtaacaaac acgttatcca gacgaccacg gtatttcgcc
     5761 agagacggcg ctttacggat ggcatacatc ggcaacaggc acagcaggga tgcgataatc
     5821 ggtgcgccca tggcttcaat aaggtcgagg atgttcgggt tggcgtaggc aacaacccag
     5881 gtggagccca tgatgaagat catgctgata gtgttcagtt tacccagcga cactttagtt
     5941 ttgtcgcctt tataaccgaa cttcagaatc agaccattca agccttccag cgtccccaga
     6001 tagtgaccga agaaagattt gaagatagcc acgagtgcga tgatggaagc cgcatattcc
     6061 agtgtaatcg cgaacgttgt tttggtaccg gtcatggacg caaagtggtt agccagataa
     6121 gaaagcactg gaatattctg cgctttggct tccgccatgt tggccggaga cagcgtaaac
     6181 aggcagctaa aggcaaagaa catcaccact gcaaccatca gcatgctggc acgagaaatg
     6241 atttgggaac atttacgttc ggtgaagtcg cgaccgaagt ctttctcata ctcttcacgt
     6301 ttagaaacca cgaaggaaga gacgattggc gagaagttaa aggagaaaac catgatggaa
     6361 atccccagcc agacagtgat caggataccg tcatgaccgg ttaacgacag cgaaccgagg
     6421 tcaacctggt cgataactgc agagttccag taagggatca gcgacagaga aatcagcacc
     6481 aggctggcga taaacggcca taccaggtag ctcatcactt taaccatcag atccttacca
     6541 aaccagatga cgaaagccat cagcagcaac aggaacagcg ccacaaagcc gcgattcagc
     6601 ggtgcaaatc cgagctggtt ttcccagaac gtcataaagg tattggtaat agtaacgcca
     6661 taaatccaca gcagtgggca aatcgcgaag aagtacagga acgtgataac cacgccgcca
     6721 gttttaccaa aatgctcttc caccgtttcc gtaatgttgc cggaagggtt agagccagaa
     6781 agacacagac gcgccagcgc ccggtggcaa taaaatgcga tggggtatgc caataccaac
     6841 atcagaagaa tcgggatcag tccgccaaaa cctgcgcgga tagggaagaa cagcaccccg
     6901 gcgccgattg ccgtaccaaa caagcctaac gtccatgtgg tatctgattt acgccaggac
     6961 gattgttttg tctggctgga tacaatgcta tctgaagtac tcatatccta tcctcaacga
     7021 attaattaag cgtcaacgaa accggtgatt tgagagacgc gagaaagatc gatattgccg
     7081 ccggaaataa tactgacggt ttttctgttt tgaatatatt ggtctaattt accgcttaat
     7141 aatgcagcac atgccagagc gcctgcgcct tcggtgacga ctttattgcg ctgaattaag
     7201 gcaatcatac tgtttctgat ttcgtcttcg ctgaccagca cgatgtcatc gactaattca
     7261 cgaacgattt cgtaagttaa attacccggg cgggagacat cacaaccatc cgccagggtg
     7321 ccggtagttc ggtgcgtggt tatttctccg gagtggaaag aagccgccat gccgtgaacg
     7381 ttttctgact gtacgccaat aacacgaatg gtcgggttaa tagatttaat tgccaccgca
     7441 ataccagcaa ttaaaccacc accaccaatt ggcacaatca cgttatcgac atcatagaga
     7501 tcttccataa tttccagacc aatcgttccc tggccagcaa tcactttcgg atcatcgtaa
     7561 ggtgggataa aaatacgacc ttccatttcg acaatttcgc tcactttagc gatagtgtcg
     7621 ttgaagttat caccatgcag aacgacttct gcggagtagt cgcacgttgc cgctactttg
     7681 gattttggcg caccttttgg catcaccact ttaccgtcga tacccagcat cgcgcaggag
     7741 agcgaaaccc cttgcgcatg gttgcccgca gaacaggcca ccacgccttt gcgtttttcc
     7801 gcatcggtca gtgaacttaa tttattaaat gcgccacgaa ttttaaatga acccgtacgc
     7861 tgcatatttt caaacttcag gaatatttca cctttgcaac gttcactaaa atagttggag
     7921 cgaggcatgc ctgttttata aattcgccca gccagtcgtt gtttcgcttc aataatatca
     7981 tcaatagcaa ctggcagatc gtatgtaata tgcattataa aacctcttcg tctgaattaa
     8041 atatgtaggt aaccgtaacc gacacctgca aaacagacag gtggattatt tatgtttaaa
     8101 taaaaacaaa taactaacca acttctatta atagccttcg tctacaccca ttataagatg
     8161 aatactcttt ggctaattcc accaaaaccg atgctgcttt tttaatacga taatttttcg
     8221 accataccgc ggcatattgt gccacaggta atgtttcttc aaccggaata gtaataaatt
     8281 gatttgaacc aaaaggtgac gtcatatcac aaggaattac agttaagaaa tcagcattga
     8341 gaacaagatt ataaattgtc acgactgagt cggttttaac gatgttttca atactgatgc
     8401 catttctttg taacgtagta agaagctcgc tgtagtaccc catattggtt tgtggcaaca
     8461 cccactgttc gttcttcaac gactccagcg tggtggtgcc ggtgcatgtt cgggacttac
     8521 tggctaccag cacaaactcg gactcgaaca gcggctcaac atgtaaatcc tgaagcttca
     8581 tttctgcact taacgtacca atcgcaaaat ccagtcgacc gtcgcggatt gccggtaaga
     8641 acgaagacag ttgcgcttca tacatagaaa cctgcgcttt cgggaacacc tctttgaact
     8701 tgttgatcat ccctgacata aaagtaaaac caatcaatga aggaaaacca aatgagactt
     8761 ccaccaccgc ctcagaagac ataccgctta tctcattaac catatttttc atttcacggg
     8821 taatggattc ggaacgggag agtaacaatt gaccggcagg tgttaatgtt acaccggtat
     8881 ttttccgcac cactaattcc acaccaaaat aatcttcaat atcgttaatg attttactga
     8941 cggccggttg agttaaccct aattcttttg cagccgagcc gatagagcca cttctaatga
     9001 cttcctgaaa gactaccagg tgctgcgttt tcggaagaag aatagtgctc ataacgacct
     9061 acgttaatta cctcattgac ggcatgaagt gtatcaaaat gaaatgaaca ggatatgtgc
     9121 gaccactcac aaattaactt tcattacttt ccagggtatc gttattacaa ttaaatatct
     9181 ttaaatatca acaagttaaa gcataaaaat cagcataaac cctgattttt atcaaaaaaa
     9241 atgacgggga taaccatatt ttatggcgat aacatcattc gttatgtggt taatacaaaa
     9301 aaggggctga gaccatattt caagcaatta ccggataatt accaggcaaa atttgagtta
     9361 aatttaatga gcaagttctc aaattttatt ataaataaac cattttcagc gataaatact
     9421 gcggcacgtc acattttttc acgctatttg ttggagaaca aacatttatt ttatcaatat
     9481 tttaaaattt cgaatacagg tattgatcat ctcgaacaat tgattaacgt caactttttc
     9541 tcttctgaca ggacgtcatt ttgtgaatgc aatcgttttc cataaattct tctcccctca
     9601 taggcgacga atagcatttt gtgttgagga tcacaaaacg aataattgct ggtcgccgcg
     9661 ataaggtcag acgaagtcaa caaggggaat tttcactgtg ctttacatca gcgtaggaca
     9721 cagaatgttg cttcgtttac tgtaacgccg ggtaaatgag cgttttttga tagtgcgtaa
     9781 gtgtcgtgcg aggaaaataa gcatctatta ttgtttgtca tgacgacaag gcaggcatca
     9841 atgaaaggct tcccaattgc acatattttt cacccttcaa tcccgccaat gcacgcagtg
     9901 gttaacaatc acaatagaaa tattgattat tggacggtaa aaagaaagtt tgcagaaatt
     9961 gtctccacca atgacgttaa aaaaatttac agtataagta atga
//
LOCUS       DAJVUN010000145         9986 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.145, whole genome shotgun sequence.
ACCESSION   DAJVUN010000145 DAJVUN010000000
VERSION     DAJVUN010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9986
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.145"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            248..1345
                     /gene="mltA"
                     /locus_tag="OQQ76_003087"
     CDS             248..1345
                     /gene="mltA"
                     /locus_tag="OQQ76_003087"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HCS1969491.1"
                     /translation="MKGRWVKYLLMGTVVAMLAACSSKSTDRGQQYKDGKFTQPFSLV
                     NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI
                     DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA
                     LGDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR
                     GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA
                     SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG
                     PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG"
     gene            1422..2228
                     /gene="tcdA"
                     /locus_tag="OQQ76_003088"
     CDS             1422..2228
                     /gene="tcdA"
                     /locus_tag="OQQ76_003088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HCS1969492.1"
                     /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW
                     AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
                     TVVDDFVTPDNVAQYMSAGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID
                     PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSIGKLGVDCVFSTEALVYPQSDGT
                     VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG"
     gene            complement(2279..2722)
                     /gene="csdE"
                     /locus_tag="OQQ76_003089"
     CDS             complement(2279..2722)
                     /gene="csdE"
                     /locus_tag="OQQ76_003089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase sulfur acceptor subunit
                     CsdE"
                     /protein_id="HCS1969493.1"
                     /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQL
                     PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGK
                     TAAELQAQSPLALFDELGLRGQLSASRSQGLNALSEAIIAAAKQV"
     gene            complement(2722..3927)
                     /gene="csdA"
                     /locus_tag="OQQ76_003090"
     CDS             complement(2722..3927)
                     /gene="csdA"
                     /locus_tag="OQQ76_003090"
                     /EC_number="3.13.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HCS1969494.1"
                     /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATRQFYS
                     LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA
                     RPCLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPR
                     SRILALSQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAF
                     SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMIHEVSFDGFTTQSAPWKLEAGTPNV
                     AGVIGLSAALEWLADYDINQAENWSHSLATLAEDALAKRPGFRSFRCQDSSLLAFDFA
                     GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV
                     DRALELLVD"
     gene            4119..4346
                     /locus_tag="OQQ76_003091"
     CDS             4119..4346
                     /locus_tag="OQQ76_003091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417289.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HCS1969495.1"
                     /translation="MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTD
                     NDTGMISYKDANGNKQQINRTDVKEMVELDQ"
     gene            4697..5614
                     /gene="gcvA"
                     /locus_tag="OQQ76_003092"
     CDS             4697..5614
                     /gene="gcvA"
                     /locus_tag="OQQ76_003092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     regulator GcvA"
                     /protein_id="HCS1969496.1"
                     /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL
                     EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP
                     SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL
                     YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGP
                     IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA
                     ELGKIAAFRQWILAKAAAEQEKFRFRYEQ"
     gene            5633..6028
                     /locus_tag="OQQ76_003093"
     CDS             5633..6028
                     /locus_tag="OQQ76_003093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HCS1969497.1"
                     /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGL
                     EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT
                     PVGGVSFLAGWALMLVGAIRLKRKGVSHE"
     gene            6021..7121
                     /gene="rlmM"
                     /locus_tag="OQQ76_003094"
     CDS             6021..7121
                     /gene="rlmM"
                     /locus_tag="OQQ76_003094"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010435097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HCS1969498.1"
                     /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIY
                     ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE
                     LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT
                     GYSYSNNNSPFYMGIPRLKFPAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL
                     GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC
                     DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA
                     QIQARQLYHDREEVTVHVRRIWAAVGGRRDER"
     gene            complement(7165..7896)
                     /gene="fucR"
                     /locus_tag="OQQ76_003095"
     CDS             complement(7165..7896)
                     /gene="fucR"
                     /locus_tag="OQQ76_003095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose operon activator"
                     /protein_id="HCS1969499.1"
                     /translation="MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQT
                     QGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDAS
                     STCWYLARQLPDINIQVFTNSHPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQ
                     LKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEA
                     RIGHLDEVTHIISDERQVATSLVTA"
     gene            complement(7954..8376)
                     /gene="fucU"
                     /locus_tag="OQQ76_003096"
     CDS             complement(7954..8376)
                     /gene="fucU"
                     /locus_tag="OQQ76_003096"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HCS1969500.1"
                     /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIR
                     ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI
                     IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP"
     gene            complement(8378..9796)
                     /gene="fucK"
                     /locus_tag="OQQ76_003097"
                     /pseudo
     CDS             complement(8378..9796)
                     /gene="fucK"
                     /locus_tag="OQQ76_003097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417283.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
     gene            complement(9793..>9986)
                     /locus_tag="OQQ76_003098"
     CDS             complement(9793..>9986)
                     /locus_tag="OQQ76_003098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969501.1"
                     /translation="SVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVY
                     RPSAWAAHGMDIEVLQERL"
BASE COUNT         2380 a         2491 c         2638 g         2477 t
ORIGIN      
        1 gttatgagcc cgacgagcta ccaggctgct ccaccccgcg tccgtggatg cgcactatac
       61 tccgctcgcg ttttcatgca accttttttt taccccgatc acggatttag catgattttg
      121 aacaaaaaca aaccactaaa gcctattttt tgtgcaaatt tgcgtcaggg agaggctgct
      181 catttcatta aacgcggcgg tttgttatct tcgttgcgcc ttatttttta acctgaagaa
      241 gagaacaatg aaaggacgtt gggtaaagta ccttcttatg ggcacggttg tggcaatgct
      301 tgccgcctgc tcttccaaat caaccgatcg cggacagcaa tataaagacg ggaaatttac
      361 ccagcctttc tctctggtga accagccaga tgccgttggc gcgccgatta acgccggtga
      421 ttttgccgag caaattaacc atatccgtaa ttcgtcaccg cgtctgtatg gcaaccagag
      481 taatgtttat aacgcggtgc aagagtggct gcgcgcaggt ggtgataccc gcaatatgcg
      541 ccagttcggc attgatgcct ggcagatgga aggtgccgac aactatggta acgtgcagtt
      601 tacaggctat tacacgccgg taattcaggc gcgccatacc cgccagggcg agttccagta
      661 tcctatttac cgtatgccgc caaaacgtgg tcgtctgccg tctcgtgcgg agatctacgc
      721 gggggcattg ggcgataaat acatcctcgc ttacagcaac tctctgatgg ataacttcat
      781 tatggatgtg cagggtagtg ggtatatcga ctttggtgat ggcagtccgc ttaacttttt
      841 cagctatgca gggaaaaacg gtcatgccta tcgcagcatt ggtaaggtgc tgatcgaccg
      901 tggcgaagtg aaaaaagaag atatgtcgat gcaggcgatt cgtcattggg gcgaaacaca
      961 cagtgaagcc gaggttcgcg agctgctgga acagaacccg tctttcgtct tctttaaacc
     1021 gcaatctttt gcaccggtga aaggggcaag tgcggtgccg ctggttggcc gtgcttctgt
     1081 tgcctccgat cgttcaatta ttccgccagg tactaccttg ctggcagaag tgccgctgct
     1141 ggataataac ggcaaattta acggtcagta cgaattgcgt ctgatggtgg cgctggatgt
     1201 cggtggcgca atcaaaggcc aacacttcga tatctatcaa gggatcgggc cggaagccgg
     1261 acatcgcgca ggttggtaca accactatgg acgtgtctgg gtgctgaaaa ccgccccggg
     1321 cgcaggtaac gtctttagcg gctgatgtgt tattctgtat accgttttta cggatacgac
     1381 agggtgaggg ataacctcac cctttttaat tctgaggtgc tatgtctgtg gtaattagtg
     1441 atgcatggcg tcagcgtttt ggtggcacag cgcgtctgta tggtgaaaaa gcgttgcaac
     1501 tgtttgctga cgcgcatatt tgtgtggttg gtatcggtgg tgtcggttcc tgggcggcgg
     1561 aagcgctggc gcgcacgggg attggcgcaa tcacgcttat cgatatggat gatgtgtgcg
     1621 tcaccaatac caatcggcaa attcacgctc tgcgcgataa cgtcgggctg gcaaaagcgg
     1681 aagtcatggc ggagcgcatt cgccagatta acccggagtg ccgtgtaacg gtggtggatg
     1741 atttcgtgac gccggataac gtagcgcaat atatgagtgc cggttattcg tacgtgattg
     1801 atgccattga tagtgtacga cccaaagcgg cgctgattgc ttattgtcgg cgcaataaaa
     1861 tcccgctggt cacgaccggt ggcgcgggtg ggcagattga cccgacgcag attcaggtta
     1921 ccgatctggc gaaaacgatt caggacccgc tggcggcgaa gttgcgcgag cgcctgaaaa
     1981 gcgattttgg cgtagtgaaa aacagtatag gtaagctcgg cgtggattgc gtgttttcta
     2041 ctgaagcgct ggtgtacccg cagtcagacg gtacggtgtg tgcgatgaaa gccacggcag
     2101 aagggccgaa gcggatggat tgtgcatctg gatttggcgc ggcaacgatg gtgaccgcca
     2161 cctttgggtt tgttgcggtt tctcatgcgc tgaagaagat gatggcgaaa gcagcgcgtc
     2221 agggttaaac aatcaggtcg gatgcgacgc gaacgtctta tccgacctgg ttctgtgctt
     2281 aaacctgctt cgccgcagcg ataattgcct cgcttaacgc attcaacccc tggctgcgtg
     2341 aggcgctaag ctgcccacgc aatcccagct catcaaacaa tgccagcggc gactgtgcct
     2401 gtaattcggc ggcggttttc ccctcaacgg cagtcaacaa caccgccaac aggccgcgca
     2461 caatgcgccc ttcgctgtcg ccaaagaagt gcattttacc gttttcagcc acggtatatc
     2521 ccagccagac gcggttttcg catccggcaa tctctttagc ctgcgctttt aactcgtctg
     2581 gcaaagccgg aagctgtttc cccagcatga tcaactggcg atatttatct tcccattgcg
     2641 tcaacggtgc gaaggtattg cgtaacgttt ctgcggttac ggttgtgccg aacggatgtc
     2701 cggcgaattg cgggtttgtc attaatccac caataattcc agcgcgcggt caacggcatt
     2761 caccagcgca tccacatcac tctttgtatt atatggcgca aaagaggcgc gcagtgtgcc
     2821 ggttacgcct aattctgcca gtagcggctg agcgcaatgt tgcccggccc gcaaggcaat
     2881 accgtactcc gccagtagcg tcaccatatc gctgtgatga acgccagcaa aatcaaaggc
     2941 cagcaggctg gaatcctggc agcggaatga acgaaagcct ggacgtttcg ccagcgcatc
     3001 ttccgccagc gttgctaagc tatggctcca gttttcggcc tggttgatat cgtaatctgc
     3061 cagccattcc agcgccgcgc ttaatcctat gacaccagcc acatttggcg ttcctgcttc
     3121 cagtttccac ggcgcagatt gagtcgtgaa gccgtcaaaa ctcacttcgt gaatcatttt
     3181 gccgccaccc agccagggcg acatcgcttc cagcagttct gatttgccat acagcacgcc
     3241 gatacccgtc gggccataca gtttgtgacc agagaaagca tagaaatcga tatccagttg
     3301 ctgaacatcc gcggggaaat gcaccgcccc ctgagcacca tcaaccatca ccaccatccc
     3361 tgctgaatga gcaaaggtaa tcgctcgcgc cagatccggg caaccgccag taacgttcga
     3421 catctgactc aacgccagaa tccgactacg gggagtaatc agttctggca acaaatcgac
     3481 atccggcagt cgctgcgcat taagcggcaa tttcaccact ttggctccag tttgttgggc
     3541 gaccatcagc caggggacga ggttggcgtg gtgttctgcc acgctgacaa taatctcatc
     3601 gcccggttgc agacacggac gcgcatagca ttgtgccacc atgttgatgg attcagtggt
     3661 gccgcgcgtc cagacgatag ttttatcatc cggtgcattc agtaattgcg ccactttctc
     3721 tcgtgcagcc tcataacgcg cggtcaggcg ttgggcttcg gcaaactggc tgcgatggac
     3781 gtttccggcg ctcaggctgt aaaactgtcg agtggcttca accacggctt caggtttaag
     3841 cgcggtcgcg gcgctgtcga gatagacgcc cgcatcctgt agtgcgggaa actgggcgcg
     3901 aaactgcgcg ggattaaaaa cgttcatggt actcctcggc ttgatgcacc gatcgtgacg
     3961 caaaattcac tttgatacaa ggagagtgct aaccatcaga attatctgga tatcctggcg
     4021 aagccgcgta agtaacatat gctgaatagt gttaggcgtt aattttagcc tgttaatcaa
     4081 tactattaag atttattaat cgctttaagg agaagatgat gaaaaagact gccgcaatta
     4141 tttctgcctg tatgctgact tttgccctga gcgcctgttc cggttcgaac tatgtgatgc
     4201 acaccaatga cggacgtacc atcgtctctg acggcaaacc acagactgat aacgataccg
     4261 gtatgatttc gtataaagac gctaatggca acaaacagca gatcaaccgt actgacgtga
     4321 aagagatggt cgaactggat cagtaattcg cgatcgcaag gtaaaaaaaa gcaccgcaat
     4381 taggcggtgc tacattaatc actatggaca gacagggtaa atgtacagga agtgaaaaaa
     4441 ggtagctttg ctaccatggt ctgaatcgca gaccaattgc aaacacaaca acacaacatc
     4501 acaaccgtaa gccaaaagtt caccagaaca cgcattccga taaaactttt cgttccggct
     4561 caggaagtgc cgccactata ggtatttgct ggtagaagct caacggacaa tttataatgg
     4621 ctcagattaa aaaaactaat aggttacata gtgtgatcta attgttaaat tcatttaaca
     4681 tcaaagttta atagccatgt ctaaacgatt accaccgcta aatgccttac gagtttttga
     4741 tgccgcagca cgccatttaa gtttcactcg cgcagcagaa gagctttttg tgacccaggc
     4801 cgcagtaagt catcaaatca agtctcttga ggattttttg gggctaaaac tgttccgccg
     4861 ccgtaatcgt tcactcctgc tgaccgagga agggcaaagc tatttcctcg atatcaaaga
     4921 gatattttcg caattaaccg aagcgacgcg taaactccag gcccgtagcg ccaagggggc
     4981 gttgacggtc agtttactcc ccagtttcgc cattcattgg ttggttccgc gactttccag
     5041 ctttaattca gcttatccgg gaattgacgt tcgaatccag gcggttgatc gtcaggaaga
     5101 taagctggcg gatgatgttg atgtggcgat attttatggt cggggcaact ggccggggct
     5161 acgggtggaa aaactgtacg ccgaatattt attgccggtg tgttcgccgc tactgctgac
     5221 tggcgaaaaa cccttgaaga caccggaaga tctggctaaa catacgttat tacatgatgc
     5281 ttcgcgccgt gactggcaga catatacccg acagttgggg ttaaatcata tcaacgttca
     5341 gcaagggcca atttttagcc atagcgccat ggtgctgcaa gcggctatcc acgggcaggg
     5401 agtggcgctg gcaaataacg tgatggcgca atctgaaatc gaggccggac gtcttgtttg
     5461 cccgtttaat gatgttctgg tcagtaaaaa cgctttttat ctggtttgtc atgacagcca
     5521 ggcagaactg ggtaaaatag ccgcctttcg ccaatggatc ctggcgaaag ccgctgctga
     5581 acaagaaaaa ttccgctttc gttatgaaca ataatttacg tagggtacga ccatgaccag
     5641 ccgttttatg ctgattttcg ccgccattag cggcttcatt tttgtggctc tgggcgcttt
     5701 tggcgcgcat gtgttaagta aaaccatggg ggccgttgag atgggctgga tccagaccgg
     5761 cctcgaatac caggcgtttc atacgctggc gatcttaggt ctggcggtgg caatgcagcg
     5821 tcgcatcagt atctggtttt actggagtag cgttttcctc gcgttaggca cggtgttgtt
     5881 cagcggcagc ctttattgcc tggcgctgtc ccatctgcgt ttgtgggcgt ttgtcactcc
     5941 ggttggcggc gtgagcttcc tcgcgggctg ggcgttaatg ttagttggtg ctatccgttt
     6001 aaagcgcaag ggcgtaagtc atgaataagg ttgtattgct gtgccgtccg ggctttgaaa
     6061 aagagtgcgc cgcagaaatt accgataaag ccggccagcg ggaaattttc ggttttgccc
     6121 gcgtgaaaga gaatgcgggt tatgtcattt atgaatgtta tcaacctgat gatggcgata
     6181 agttaatccg tgagctgccg ttcagttcat taatttttgc ccgccagtgg tttgtggtgg
     6241 gggaactcct gcagcatttg ccgccagaag atcgtattac ccccattgtc ggcatgttac
     6301 agggcgtagt agagaagggc ggagaactgc gtgttgaagt tgccgatacc aacgaaagca
     6361 aagagttgct gaaattctgc cgtaaattta ctgttccgct acgcgctgcc ttgcgcgatg
     6421 ccggggtgct ggcgaactat gaaacgccga agcgtccggt tgtgcatgta ttctttattg
     6481 caccaggctg ctgctatacc ggttactcat acagcaacaa taattcgccg ttctatatgg
     6541 gcattccgcg cctgaaattt ccggcagagg cgccgagtcg ttccacgctc aaactggaag
     6601 aggcatttca tgtgtttatt cctgcggatg agtgggatga acgcctggcg aacgggatgt
     6661 gggcggtgga tttaggcgct tgccctggcg gctggaccta ccaactggtg aagcgcaaca
     6721 tgtgggttta ttccgtcgac aacggcccga tggcgcaaag tctgatggat accgggcagg
     6781 tgacgtggct gcgggaagac ggtttcaaat tccgtccgac acgcagcaat atctcctgga
     6841 tggtatgcga tatggttgaa aaaccggcta aagttgcggc attgatggcg cagtggctgg
     6901 ttaatggctg gtgccgtgaa accattttca atctcaaact gccgatgaaa aaacgctacg
     6961 aagaagtatc acacaatctg gcgtatattc aggcacagct tgatgaacat ggcataaatg
     7021 ctcagattca ggcgcggcag ttgtatcacg atcgcgaaga agtgacggtg cacgtccgcc
     7081 gcatctgggc tgcggtgggt ggtcgtcgcg acgagcgata acaggcaagg ccggggcgtc
     7141 gtcttcggcc tgctaccctt tccgtcaggc tgttaccaaa gaagttgcaa cctggcgctc
     7201 atcagaaata atgtgcgtta cctcatccag atgcccgatg cgggcttccc ctgaacgatt
     7261 aaatttactt ttatcaatca ataacaacga ttgcgcggca cgttttaata gcatcgattt
     7321 gtaatcagcg ttgatcgcat tggagtccca cagtgcgccg ctgctatcga tcccttcaca
     7381 agaaaaaata aacagatcga tttccagcga tttaagttgg gaaatcagcg agggattgac
     7441 gtaacagcca tatttgcgct caagtgtgcc gccggaactg atcagttgaa tgcgttcgcg
     7501 tttaccgagt tcatggcaaa tcggatggct attggtgaag acctgaatgt tgatgtcagg
     7561 caactggcgt gccagatacc agcaagttga actggcgtct aaggctatca ccatcccttc
     7621 ttcaatccac gcgagcgcct cgcgcgcgat atctgcttta tgcgcataat ggcttttcag
     7681 cctgatgtga aagggatcgc cactgtcttg attttgacgg tggatatatt tagcgcgtcc
     7741 atgattgcgc agaattttac cctgcgtctg taattcattg agatcgcgac gaatggtttc
     7801 tttactgacc tttagctgtt cagagagagc ttccgtggtc aggctggtat ggttcagcag
     7861 caggtcgact atcgcttgct ggcgtgccgc tttcatattt ttcaccccat cattcgataa
     7921 ccgcccgcgt catgcgggcg taccggtatg agattacggt gttacccctt tttttaaaag
     7981 aatattcccg tacttcgctc gttcgcctgt gataacgatc gcaaaggctt tttgcgcccg
     8041 ttcataaaac gcaaaacgat tgatgcggat gatgtcagga cacggggctt gtagtgaaag
     8101 cgcattacgg taacgtcgtt ctacttcagg atcgagagtg tcaccttcta ccgccgccat
     8161 catcaccagc ggcggtgcat aactgtccag ttcaaataac gggataatcg cctggagcaa
     8221 gtcgctcacc aacaggccat cagcgcggat cacctgcggt cccatcgaat gggcgggaaa
     8281 gtgagcatcg gaaaaaataa tttcatctcc atgtcccatc tctgccagca ctttcaatag
     8341 ttcgggagaa attaacggcg aaattgtttt cagcatttca cacttcctct ataaattcag
     8401 gttcagtttg cgggtagaaa taacggtact gataatgaat ctatgcgcgg gcttcttcag
     8461 ggctgttaaa ttcccctacg ccataccaac cgaacagcgc agctcctgcg acggtcgttt
     8521 cggcgtcgtc gagaactttt accggaatat caagcatatt ggctttaatc tgattccaca
     8581 atgtgttgcg acttcctcca ccgactaaca ataattcaga ggccttaaag tgcccgattt
     8641 tttccagcat ctgtagattg cgctgtaatt gcgcagttaa cccttccagc gccgcgcgat
     8701 agaaatgccc ccgcgtggta ttaagcgtca ctccttgcca gccagcgttc tgacacgaca
     8761 ataaatcaca ctgcattttt acgccatccg cgctaggcgc gatcagacga gcttcttcaa
     8821 tcaacatttg ccagggtgtt tcagccgtcc agaacagttt tctcacccat tccagcacgc
     8881 cggatgccag ccattgcata cctaggttat acaaccctgc ctggctatcc agttcgcagg
     8941 tggaaccggc gtactgactt aacagcgaag tatcaaccta ggcgctacgg accattaaaa
     9001 tttcccatgt accggaagag agcacgggtt cattttggtc ggcaccagcg ccaaaaaggg
     9061 cgaactgggt atcgtgacct gcggaaatca ccggtatgcc aacgggtaag ccgagcattg
     9121 ctgcggcgct gttctgtagc gtaccaatct gttcacccgc ttccaccaga cgagggaaga
     9181 gtcggcgtgg aataccagtg gcttgtaaaa tttgcggact gaaatcgcgt tgctggatat
     9241 ccagcatctg gctggttccg gccatcgtga tatcagtagt gaattcgccg gttaaacggt
     9301 ggttaatcag cgacgaaata aagaaccagg cgtgcgcgcg ttccagcagt tgtggatgat
     9361 tttctttcaa ccacaccaac ttatataacg tattgaaact aaaggctccg acgccagaaa
     9421 tagcctgcaa ccgctgtgcg gagatcaact gttcaatatt gtccataacc gctgctgttc
     9481 gcggacattt ccagctaatg atcggataga gcagattacc ttgcttatct accagagcgc
     9541 catccacacc aaaggtggtg acggcgatac cgcggatgtg gcattcagtc agttcactat
     9601 tgatttgccg acagcaatca gcaaagcgtt gcaaaatggc gtctaaagac cactggtgcc
     9661 aggtgttgtt ttccatcgcg atatcgctgg cattaggcgt tgaggcgcgg gcaacaattt
     9721 ttccctgccg attaaccgcg atggccctga cattggtcgc gccacagtcg agtaccagga
     9781 taacttcttg tttcataatc gctcctgcaa tacttcaata tccatgccgt gcgcagccca
     9841 ggcagaagga cgatacactt tggtctcttc aacgttgtgc atacataccg ggatacgcag
     9901 catggaggcg agagtgataa agtcagcgcc aacgtggccg atggtcagaa ccccatggtt
     9961 agcgccccag ttcgccatta ccgagt
//
LOCUS       DAJVUN010000146         9826 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.146, whole genome shotgun sequence.
ACCESSION   DAJVUN010000146 DAJVUN010000000
VERSION     DAJVUN010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9826
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.146"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(174..1523)
                     /gene="lysC"
                     /locus_tag="OQQ76_003099"
     CDS             complement(174..1523)
                     /gene="lysC"
                     /locus_tag="OQQ76_003099"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HCS1969502.1"
                     /translation="MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI
                     TNLLVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAA
                     ALATSPALTDELVSHGELMSTLLFVEILRKRDVQAQWFDVRKVMRTNDRFGRAEPDVA
                     ALAELAALQLLPRLNDGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVD
                     IWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV
                     GSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR
                     HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI
                     GNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE"
     gene            2048..3697
                     /gene="pgi"
                     /locus_tag="OQQ76_003100"
     CDS             2048..3697
                     /gene="pgi"
                     /locus_tag="OQQ76_003100"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HCS1969503.1"
                     /translation="MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSAT
                     FDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALR
                     NRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDL
                     GPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN
                     AHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA
                     IGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEA
                     ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD
                     PATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW
                     GVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG"
     gene            4159..4401
                     /locus_tag="OQQ76_003101"
     CDS             4159..4401
                     /locus_tag="OQQ76_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969504.1"
                     /translation="MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSA
                     TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ"
     gene            4515..5152
                     /locus_tag="OQQ76_003102"
                     /pseudo
     CDS             4515..5152
                     /locus_tag="OQQ76_003102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418451.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
     gene            5149..5886
                     /locus_tag="OQQ76_003103"
     CDS             5149..5886
                     /locus_tag="OQQ76_003103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HCS1969505.1"
                     /translation="MIKQTFVALLLSVGASSVFAAGTVKVFSNGSSEAKTLTGAEHLI
                     DLVGQPRLANSWWPGAVISEELATAAALRQQQALLTRLAEQAADSSADDAAAINALRQ
                     QIQALKVTGRQKINLDPDIVRVAERGNPPLQGNYTLWVGPPPSTVTLFGLISRPGKQP
                     FTPGRDVASYLSGQNLLSGADRSYAWVVYPDGRTQKAPVAYWNKRHVEPMPGSIIYVG
                     LADSVWSETPDALNADILQTLTQRIPQ"
     gene            5886..7982
                     /locus_tag="OQQ76_003104"
     CDS             5886..7982
                     /locus_tag="OQQ76_003104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HCS1969506.1"
                     /translation="MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPT
                     ARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTY
                     KDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
                     LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRL
                     KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN
                     DLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGE
                     QVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEP
                     LGHETKLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVIG
                     MADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNL
                     QANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSA
                     KDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV
                     GGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR
                     KFQLYDMTSDRSVNFR"
     gene            complement(8029..8307)
                     /locus_tag="OQQ76_003105"
     CDS             complement(8029..8307)
                     /locus_tag="OQQ76_003105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969507.1"
                     /translation="MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSN
                     VSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH"
     gene            8577..8975
                     /gene="psiE"
                     /locus_tag="OQQ76_003106"
     CDS             8577..8975
                     /gene="psiE"
                     /locus_tag="OQQ76_003106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HCS1969508.1"
                     /translation="MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLAD
                     VLFAPEQTSKYELVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHK
                     SPLDVLIYSAAILLLVITLWLCNSKRLKRE"
     gene            complement(9019..>9826)
                     /locus_tag="OQQ76_003107"
     CDS             complement(9019..>9826)
                     /locus_tag="OQQ76_003107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HCS1969509.1"
                     /translation="PRWLMSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTG
                     GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVIN
                     LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF
                     AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN
                     GFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL"
BASE COUNT         2401 a         2545 c         2596 g         2284 t
ORIGIN      
        1 ttctcttaac tatttatctc tttcgataat taattagaga tgcagataaa aaaattaaag
       61 gcaattattc tcgataaaga cgttggttaa cagagtacag gctcgtttat tgataagcat
      121 agtgacaaga aaatcaatac ggcccgaaat atagcttcca ggccatacag tatttactca
      181 aacaaattac tatgcagttt ttgcaccacc tgctcggcat cttcgccggg caccaggaag
      241 cacaggttat ggctggatgc gccgtaacaa atcatgcgaa tgttgaacgg ttccagtacg
      301 ccgaatacct ctttgccaac gccgcaggct tttgacaggt cattgccaat caacgcgacc
      361 agcgccagac cttcttctac ttccacccgg cacagtgcgg aaagctccat cagcagagat
      421 tgcgtcagca acgtatcgcc agtggaggtt gaaccggtgg tatcaagggt taatgccacg
      481 ctcacttctg acgtggtgat taagtctacc gaaatattat gccgcgcgag gatgccgaaa
      541 acttccgcga ggaagccgcg agaatgcagc atattcaggc tgtgcaaagt gagcagagtc
      601 tgattgcgac gaagcgccag cgcgcggaac agcggaggat tttcagtttt attgcacacc
      661 agcgtaccac ctgcgcgtgg gtctttgctg gagccgacaa agaccgggat atcgctgcgt
      721 actgcgggta gcaacgttgc cggatgcagt acttttgcac caaaagttgc catctctgcc
      781 gcttcggcaa acgcgatttc atcaatgcgt tttgctgcgg aaactacgcg tggatcggtg
      841 gtgtagatgc ccgggacgtc ggtccagata tcaacacgag atgcgtgtaa agcctccgcc
      901 agcaaggctg ccgtataatc gctgcctcca cggccaagcg tcgttgtacg acctttattt
      961 tcgctaccga taaatccctg ggtgatcact aagccgtcat tgaggcgtgg gagcagctgc
     1021 agcgcggcca gttccgccag cgcggctaca tctggctctg cacgaccaaa tcggtcgttg
     1081 gtacgcatca ctttacgtac atcaaaccac tgtgcctgaa catcgcgttt gcgcaggatt
     1141 tcgacaaaca gcagggtcga catcagctcg ccgtggctga ccagctcatc tgtcagcgcc
     1201 ggagacgttg ccagcgccgc cgcttctgcc agaacagtaa tgttctccag cagacgttca
     1261 atctcttcac ggataacgtt cgggtaacgc agacgttcca gaatggcaaa ctggatgttg
     1321 cgaatagcgt cgagtttttc gaatcgctcg ccaggttcca gcccttccgc taaagcgacc
     1381 agcagattag tgataccagc agaagccgag aggactacta aacgcacgtt ggcatcagaa
     1441 agcacaatat cagcgctgcg gttcatggcg tcaaaatcag ctacgctggt accgccaaat
     1501 ttggagacaa caatttcaga cataactacc tcgtgtcagg ggatccattt tcagccttgg
     1561 cacaagggaa gagcggaaga cgggtgggcg cagagcgata cttcgctact attttcaccc
     1621 agaagtgctc caccacttgc gaaacgcccg actgcgaacg cttctggtga caacccaggg
     1681 gattcagccc ctgtagccga tgatgaacgt ggccagccgt tcaatcacct cggcgatgca
     1741 ccccctcagg tgttatcaca ggactggctc ctccaacacc gttacttggg caacgcgcct
     1801 cttctggcct gcgctagcgc aggtagtaca tttataaata aagggtgagc ggggcggttg
     1861 tcaacgacgg ggtcatgcgg atttttcatc cactcctggc ggtcagtagt tcagctaata
     1921 aatgcttcac tgcgctaagg gtttacactc aacattacgc taacggcact aaaaccatca
     1981 catttttctg tgactggcgc tacaatcttc caaagtcaca attctcaaaa tcagaagagt
     2041 attgctaatg aaaaacatca atccaacgca gaccgctgcc tggcaggcac tacagaaaca
     2101 cttcgatgaa atgaaagacg ttacgatcgc cgatcttttt gctaaagacg gcgatcgttt
     2161 ttctaagttc tccgcaacat tcgacgatca gatgctggtg gattactcca aaaaccgcat
     2221 cactgaagag acgctggcga aattacagga tctggcgaaa gagtgcgatc tggcgggcgc
     2281 gattaagtcg atgttctctg gcgagaagat caaccgcact gaaaaccgcg ccgtgctgca
     2341 cgtagcgctg cgtaaccgta gcaatacccc gattctggtt gatggcaaag acgtaatgcc
     2401 ggaagtcaac gcggtgctgg agaagatgaa aaccttctcg gaagcgatta tctccggtga
     2461 gtggaagggt tataccggca aagcaatcac tgacgtagtg aacatcggga tcggtggttc
     2521 tgacctcggc ccgtacatgg tgaccgaagc actgcgtccg tacaaaaatc acctgaacat
     2581 gcactttgtt tctaacgtcg atgggactca catcgctgaa gtgctgaaaa aagtaaaccc
     2641 ggaaaccacg ctgttcttgg tagcatctaa aaccttcacc actcaggaaa ctatgaccaa
     2701 cgcccatagc gcgcgtgact ggttcctgaa agcggcaggt gatgaaaaac acgttgcaaa
     2761 acactttgcg gcgctttcca ccaatgccaa agccgttggc gagtttggta ttgatactgc
     2821 caacatgttc gagttctggg actgggtcgg cggccgttac tctttgtggt cagcgattgg
     2881 cctgtcgatt gttctctcca tcggctttga taacttcgtt gaactgcttt ctggcgcaca
     2941 cgcgatggac aagcatttct ccaccacgcc tgccgagaaa aacctgcctg tcctgctggc
     3001 gctgattggc atctggtaca acaatttctt tggtgcggaa actgaagcga ttctgccgta
     3061 tgaccagtat atgcaccgtt tcgcggcgta cttccagcag ggcaatatgg agtccaacgg
     3121 taagtatgtt gaccgtaacg gtaacgttgt ggattaccag actggcccga ttatctgggg
     3181 tgaaccaggc actaacggtc agcacgcgtt ctaccagctg atccaccagg gaaccaaaat
     3241 ggtaccgtgc gatttcatcg ccccggctat cacccataac ccgctctctg atcaccacca
     3301 gaaactgctg tctaacttct tcgcccagac cgaagcgctg gcgtttggta aatcccgcga
     3361 agtggttgag caggaatatc gcgatcaggg taaagatccg gcaacgcttg actacgtggt
     3421 gccgttcaaa gtgttcgaag gtaaccgccc gaccaactcc atcctgctgc gcgaaatcac
     3481 tccgttcagc ctgggggcgt tgattgcgct gtatgagcac aaaatcttta ctcagggcgt
     3541 gatcctgaac atctttacct tcgaccagtg gggcgtggag ttgggtaaac aactggcgaa
     3601 ccgtattctg ccagagctga aagatgacaa agaaatcagc agccacgata gctcgaccaa
     3661 tggtctgatt aaccgctata aagcgtggcg cggttaatca tcatgcgtgc ctgatgccga
     3721 tatgtaggcc ggataaggcg tttacgccgc atccggcaac cggagcctga tgccaatatc
     3781 gacattaatg catagtatga ggagttaaat aaccttaaaa acaatgccga caataagtcg
     3841 gcattgtttt atcagataaa tccccttgtc tgtgatttaa cggaaatcat accgtgaggt
     3901 taatcctaaa atagattttt aatcgttgtt tatttcggag aatacgcaga ttaattactt
     3961 ttgtttttat tttaagttta tgatttttat tgttatttaa atataagttg aagcttatat
     4021 ttgatattca ttccaattat cctaaaacgc catcgctaat tccccgcgcc gtaattcgca
     4081 tgctttagtt gtgtatactc gatcccgccc gaaatgtttt tgggtaaatc tccattcatt
     4141 caatgaaggg aaattgttat gaaaaaagtt ctgtatggca tttttgccat atctgcgctt
     4201 gcggcgactt ctgcgtgggc tgcacctgta caggtgggcg aagcggcagg gtcggcagca
     4261 acgtcggttt cggcgggtag ttcctccgcg accagcgtca gcaccgtaag ctcggcggtg
     4321 ggtgtcgcgc tcgcggcaac cggtggcggt gatggttcta ataccgggac caccacaacc
     4381 acgaccacca gtacccagta ataaagtatg tatccccaaa ataatttgag tcattgcatc
     4441 tgtggcttga agtatgaagg gatttaccat aaccacactc cggtgtggtt attctgcccc
     4501 tctggagaag agtcgtgaag cgacctgcac tcattcttat ctgcctgcta ttacaggcct
     4561 gttcagccag actaaagagc tgggcaattc actgtgggac agtctgttcg gcacgccagg
     4621 cgtacagctg acggacgatg atattcaaaa tatgccctac gccagccagt acatgcagct
     4681 taatggcggg ccgcaattgt ttgtggtgct ggccttcgct gaagacggac aacaaaaatg
     4741 ggtcactcag gatcaagcca ctcttgtcac acaacatggt cgtctggtga agactttgct
     4801 tggcggcgac aacctgattg aagtgaataa ccttgccgcc gacccgctga ttaaacccgc
     4861 acaaattgtt gatggtgcaa catggacgcg cacgatgggc tggaccgagt accagcaggt
     4921 acgctacgcc accgcacgct cagtcttcaa atgggatggc accgataccg tcaaagtcgg
     4981 cagcgatgaa accctggttc gcgtgctgga cgaagaagtc tccaccgacc aggcgcgctg
     5041 gcataaccgc tactggatcg acagcgaagg gcaaattcgc cagtcggaac agtatctcgg
     5101 cgcggattat ttcccggtga aaaccactct catcaaggcg gcaaaacaat gattaaacaa
     5161 acttttgtcg cgttgctttt gagtgtggga gcgtcatcgg tcttcgcggc aggaaccgtc
     5221 aaggtgttca gcaatggcag cagtgaggcc aaaacactaa caggcgcaga gcatttaatc
     5281 gatctggtag gccaaccgcg gctggcaaac agctggtggc ccggtgcggt gattagcgaa
     5341 gagctggcaa cggcggcagc attgcgtcag cagcaggcgt tgctgacacg gctggctgaa
     5401 caggccgcag actccagcgc cgacgatgcc gccgccatta acgccttacg ccagcaaatt
     5461 caggcgttga aagtgacggg caggcaaaaa atcaatcttg atcccgatat cgtgcgcgtt
     5521 gccgaacgcg gtaacccacc gttgcagggc aactacacgc tgtgggtcgg accaccgccg
     5581 tccacggtca cgttgttcgg gcttatcagc cgtcctggca agcagccatt cactccaggt
     5641 cgcgacgtgg cgagctatct ctccgggcag aacctgctta gcggtgcgga tcgcagctac
     5701 gcgtgggtgg tttacccgga cggacgcacg caaaaagcgc cggtggctta ctggaacaag
     5761 cgtcacgtag agccgatgcc cggcagcatt atttatgttg gcctcgcgga ctccgtctgg
     5821 agtgagacgc ctgatgccct taacgccgac attcttcaga ctctgacgca gcggataccc
     5881 caataatgaa aaaaagacat ctgcttagct tactggcgct gggcattagc atggcttgct
     5941 acggcgaaac atatcctgcg cccattggcc cgtcgcagtc ggatttcggt ggcgtaggat
     6001 tattacaaac gcccaccgca cgcatggcgc gggaagggga gttgagcctg aactatcgcg
     6061 ataacgatca gtaccgttat tactcagctt cagtgcaact cttcccgtgg ctggaaacaa
     6121 cgctgcgcta caccgacgtg cgcacccggc agtacagcag cgtcgaagcg ttctctggcg
     6181 atcaaacgta taaagataaa gccttcgatc tcaaactgcg tttgtgggaa gagagttact
     6241 ggctgccgca agtggcggtt ggtgcgaggg atatcggcgg tacggggctg tttgatgcgg
     6301 aatatcttgt tgccagcaaa gcctgggggc cgttcgattt tacgctcggc ctgggctggg
     6361 gttatctggg caccagcggt aatgtgaaaa atccgctctg ttcagccagt gataaatatt
     6421 gctatcgcga taacagctac aaacaggcgg gatctatcga cggtagccag atgttccacg
     6481 gtcctgcctc actgtttggc ggcgtggaat accagacgcc ctggcaaccg ctgcgcctga
     6541 aactggagta tgaaggcaat aattatcagc aggattttgc cgggaagctg gagcaaaaaa
     6601 gtaagtttaa cgtcggtgcg atttatcgcg ttaccgattg ggccgacgtt aaccttagct
     6661 atgaacgtgg caacaccttt atgtttggcg tcacgctgcg caccaacttt aacgatctgc
     6721 gcccgtctta caacgataac gcccgcccgc aatatcaacc gcagccgcag gatgccattt
     6781 tgcagcattc ggtggtggcg aatcagttaa cgctgttgaa atacaatgcc ggacttgccg
     6841 atccgcagat ccaggcgaaa ggcgatacgc tgtatgtcac cggcgagcag gtgaaatatc
     6901 gtgattcgcg cgaagggatc atccgtgcta atcggatcgt gatgaacgat ctgccggatg
     6961 ggatcaaaac gatccgcatt acggaaaatc gtcttaacat gccgcaggtg acgacggaaa
     7021 ccgatgtcgc cagcctgaaa aatcatctcg ccggagagcc gttgggccac gaaacgaagc
     7081 tggcgcaaaa acgcgtcgag ccagtggttc cgcagtccac cgagcagggc tggtatatcg
     7141 acaaatcacg ctttgatttc catatcgatc cggtgctgaa ccagtcggtc ggtggcccgg
     7201 aaaactttta catgtatcag ctgggcgtga taggaatggc agatttgtgg ctgacggacc
     7261 atctgctgac caccggcagc ctgtttgcaa atcttgccaa caactacgac aagtttaact
     7321 acaccaatcc gccgcaggac tcgcacttac cgcgcgttcg tacccatgtg cgcgagtatg
     7381 tgcagaacga tgtctatgtg aataacctgc aagccaacta cttccagcat ctgggcaacg
     7441 gcttctacgg tcaggtctat ggaggttatc tcgaaaccat gtttggcggt gcgggggccg
     7501 aagtgttgta tcgtccgctg gacagtaact gggcgtttgg tctggatgcc aactacgtta
     7561 aacagcgcga ctggcgtagt gcaaaagata tgatgaaatt caccgactac agcgtgaaaa
     7621 ccggacatct gaccgcctac tggacgccat ctttcgccca ggacgtgttg gtgaaagcca
     7681 gcgtcgggca gtatctggca ggggataaag gcggcacgct ggagatcgcc aaacgctttg
     7741 acagcggcgt ggtggtgggt ggctatgcca cgatcaccaa cgttttgaaa gaggagtacg
     7801 gcgaagggga cttcaccaaa ggcgtgtatg tctcggtacc gttggatctc ttctcgtctg
     7861 gcccgacacg cagccgtgcg gcgattggct ggacgccgct gacgcgtgac ggtggtcagc
     7921 aacttgggcg taagttccag ttgtatgaca tgaccagcga ccgtagcgtc aatttccgct
     7981 aagtcatggg aaaggtgcca gttttcgcac tcactggcac cttcattctt aatggcctgt
     8041 cgagccatca ggaacgcagt tcacccccgg tttgcgatct ggtgtgtaaa ggcgaaaaca
     8101 ttctgtcttc ctgtccgtcg atatcggttg caggtctggt tgcctgagcg actgggccat
     8161 cattgggctg gagacattgc tttgcggtag gtcggcttta tcagcagtac cgagcggacc
     8221 agcataagca ggaagaacag agactgataa catcaaagca gcaaaataag gcttcatttt
     8281 taccaccttt atcaggttac gtttcatttg ttccagagga acattgtcga tttttcgcgc
     8341 attactggtg gctgggaatc acctgaatgg gtgatttttg aattaccggc ttgggtgcgg
     8401 tttgtcttgc cggatgcgcc gccaggcgcg gcttatccgg cctacgggta ggtatatccg
     8461 gctttggtgg aggcgcgctc caaatccagg ttgaacaaaa catacacaaa aaatatagat
     8521 ctccgtcaca tttttgcgtt atacaggaag ctcgccactg tgaaggaggt actgctatga
     8581 cgtcactctc tcgtccgcgc gtggagttta tctccaccat tttgcagacc gtactcaatc
     8641 ttggcctgct gtgcctcggc ctgattttgg ttgtcttcct cggcaaagaa acggtgcatc
     8701 tggcagatgt gctgttcgcg ccagaacaaa ccagcaaata tgagctggtg gtttactttc
     8761 tctatttcga atttatcgcg ctgattgtga agtactttca gtccggtttt cacttcccgc
     8821 tacgttactt tgtctatatt gggatcaccg ccattgtgcg cttgatcatc gtcgatcata
     8881 aatcgccact ggatgtgttg atctactcgg ctgcgatcct gttactggtg atcactctgt
     8941 ggctgtgtaa ttcgaaacgg ctgaagcggg agtaaaaaga cagcacgccg aactggcgcg
     9001 gcgtgctgga caggaagatt acagcgtagc agtttgttgt gttttcttcg tttccggttc
     9061 ccagagggct tccagctcct caagggtttt acctttggtt tccgggacaa atttccacat
     9121 aaatagtgct gccagaacgc ccatacaccc gtaaatccag taggagaaac cgttgtggaa
     9181 atgggccacc agccaggagt ttttgtccat catcgggaag gtccaggaga cgaagtagtt
     9241 cgccagccac tgggccgcca ccgcgattgc cagcgcctta ccacgaatag cattcgggaa
     9301 gatttccgac agcagtaccc agcataccgg accccaggac atggcaaagg cagcaacata
     9361 gaacagcatc gacagtagcg ccacaatacc cggtgcctga gtgtaaaacg cggtaccgag
     9421 gctaaacata ccgattgcca ttccgagtgc gccgataatt tgcagtggct tacgaccaaa
     9481 tttatccacc gtcataattg ccagaacggt gaaggtgagg ttgataactc cgacaataat
     9541 ggtctgcaac agcgcgatat ccgtgctggc ccccagcgtt ttgaacactt ccggcgcgta
     9601 gtacagcacc acattgatgc cgacaaattg ctggaagatg gagagcataa cgccgatgac
     9661 aatcacgccc acgccaaaca tcagcagacg accaccggtt ttgcggccat gatccaggga
     9721 gtgtttaatt tcctgtactg cctgagttgc aagcgtgttg cccataattt tgcgcaggat
     9781 actttccgcc tgttcttgct tgccgcgtga catcagccag cgagga
//
LOCUS       DAJVUN010000147         9654 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.147, whole genome shotgun sequence.
ACCESSION   DAJVUN010000147 DAJVUN010000000
VERSION     DAJVUN010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9654
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.147"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..592
                     /locus_tag="OQQ76_003108"
                     /pseudo
     CDS             1..592
                     /locus_tag="OQQ76_003108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="RtcB family protein"
     gene            589..1203
                     /locus_tag="OQQ76_003109"
     CDS             589..1203
                     /locus_tag="OQQ76_003109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS1969510.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1260..2717)
                     /gene="pepD"
                     /locus_tag="OQQ76_003110"
     CDS             complement(1260..2717)
                     /gene="pepD"
                     /locus_tag="OQQ76_003110"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1969511.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            2978..3436
                     /gene="gpt"
                     /locus_tag="OQQ76_003111"
     CDS             2978..3436
                     /gene="gpt"
                     /locus_tag="OQQ76_003111"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1969512.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKCAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3528..4772
                     /gene="frsA"
                     /locus_tag="OQQ76_003112"
     CDS             3528..4772
                     /gene="frsA"
                     /locus_tag="OQQ76_003112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS1969513.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKCLC"
     gene            4830..5231
                     /gene="crl"
                     /locus_tag="OQQ76_003113"
     CDS             4830..5231
                     /gene="crl"
                     /locus_tag="OQQ76_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HCS1969514.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5270..6325)
                     /gene="phoE"
                     /locus_tag="OQQ76_003114"
     CDS             complement(5270..6325)
                     /gene="phoE"
                     /locus_tag="OQQ76_003114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HCS1969515.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINGQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRKLGALYDVEARTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF
                     GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN
                     LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF
                     DFGLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK
                     LNINNDDIVAIGMTYQF"
     gene            6613..7716
                     /gene="proB"
                     /locus_tag="OQQ76_003115"
     CDS             6613..7716
                     /gene="proB"
                     /locus_tag="OQQ76_003115"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HCS1969516.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            7728..8981
                     /gene="proA"
                     /locus_tag="OQQ76_003116"
     CDS             7728..8981
                     /gene="proA"
                     /locus_tag="OQQ76_003116"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HCS1969517.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            9096..9171
                     /locus_tag="OQQ76_003117"
     tRNA            9096..9171
                     /locus_tag="OQQ76_003117"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9129..9131,aa:Thr,seq:cgt)
     gene            complement(9186..>9654)
                     /locus_tag="OQQ76_003118"
     CDS             complement(9186..>9654)
                     /locus_tag="OQQ76_003118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1969518.1"
                     /translation="VAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKES
                     CTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVL
                     QEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSRNKERTNDV"
BASE COUNT         2331 a         2387 c         2535 g         2401 t
ORIGIN      
        1 agtctatttt acagcggcat attgcctcgt tctcgcatca tggtttgcct caaggcagtg
       61 acgacgcgct acggtatatt gcggaacatg acgatgcgct ggcgtttgcg tgtattaatc
      121 gccagatgat cgctttgcgc ataatgcaac aagttaaggc cacgggaagt ccggttctgg
      181 atgtggcgca taactttgtt agcgcgtgtc aaatcggcga tcaacagggc tggttgcatc
      241 gtaaaggtgc cacgccggat gacaacggtc tggtgattac tcctggattg tacagcctgt
      301 tgcgaacgaa aaaacgctcc actcgctggc gcatggggca gggcgtaaat gggggcgcac
      361 cgagtgtaaa tggcgtctgg cagcgaaata cacggtgacg caactctcgc ggactgaact
      421 tggcagtcgg ataatttgtc gcgataaaca actcatcttt gaagaagcgc cacaagccta
      481 taaatcggct gaaagcgtgg tgcaatgtct ggtgcaggcc ggtttaatta ttcctgtcgc
      541 gcggctgcgt ccggtgctaa cgctcaaaaa cagtggaggg aaaaaaggat gatcttgcta
      601 caactctcct cagcgcaggg gccggaagaa tgttgtctcg cagtgaaaaa ggcgctggac
      661 aggctaatta aagaagctgc ccgacaagac gtcgcggtaa cggtgttgga aacagaaacg
      721 ggccgctact ctgacacgct gcgttcagct ctggtttctc tggatggcga taacgcatgg
      781 gcattaagcg aaagctggtg tggcactatt cagtggattt gtccgagtcc gtatcggcct
      841 catcatgggc gcaaaaactg gtttctgggc attgggcgtt ttaccgctga tgagcaggag
      901 caatccgatg cgatccggta tgagacgctg cgttcgtcgg ggccgggcgg tcaacatgtc
      961 aataaaaccg actcggcggt acgcgccacg catttggcat ccggtattag cgtgaaggtt
     1021 cagtcagagc gtagtcagca tgctaacaag cggctggcac gattgctgat tgcctggaag
     1081 ctggagcagc agcaacagga aaatagcgcg gtgctgaaat cgcagcggcg aatgttccat
     1141 caccagattg aacgtggcaa cccgagacgg acatttacag ggatggcttt tatcgaagga
     1201 taatgaagga tgaaactgcc ggaaggcgat taaacgccat ccggcagcaa atcaaataat
     1261 tacttcgccg gaatttcttt cagcagttca gtcagcagtg tccagtaatg acctacgctt
     1321 tcgatgtgaa cttgctcatc cggagagtgt ggaccggtga tagttggccc gatagaaacc
     1381 atgtccattt ccggatacgg ttttttgaac agaccacatt ccaggcccgc gtggataatc
     1441 tggatgttcg gcgtcttgtt gaacaggcgc tgataggttt cacgtaccag atgcatcacc
     1501 ggagaattag cgtccggctg ccagccagga tatgcgcctt tcgcttcggt tttcgcgcca
     1561 gccagtttac ccagcgaatc cagcatgctc accacgtagt ctttaccgct gtcgatcagt
     1621 gaacggatca ggcagtgaat ttctacgtta ttgtcagtca tggtcaccac accgacgttc
     1681 agggaggttt caaccacacc tttggctaca tcggagttgc ggatcacacc gttcggggtg
     1741 gcgttcagca gacgaataaa ggtatcgcga gatttcgcaa tcagggcagc tttatcgttc
     1801 gctacagagt ccagcaacaa ggccagattt ttctctttct ctgccagctc gtttttcagg
     1861 atctcctgat aggtattcac cagagatttc agtgcgtcga ctttatcagc tgcgacagca
     1921 atggtcgcaa aggcttcacg cgggatggcg ttacgcagtg tgccgccgtt gaaatcgata
     1981 aggcgcaggt ccagttcttc tgcatgaccc gccaggaagc gcaccagcag tttgttggca
     2041 ttacccaggc caacgtggat ttcaccgccg gagtgaccgc ctttcagacc ttttaaggtt
     2101 aacttgaagg tttcaaaacc agctggaacc gcttcacgat ctaaatgcag gttggaggtg
     2161 aagtcgatac cccccgcaca acccatgtag atttcacctt cttcttcgga gtcggtgtta
     2221 atcagaatat cagcctgcaa ccagttgctc tgtaagccaa aagcaccgtc cataccggct
     2281 tcttcggtca tggtcagcag cacttccagc ggaccgtgaa ccacgttttc gtcagccaga
     2341 accgccagtg cagaggccat accaatgccg ttatccgcac ccagcgtggt gccgcgcgct
     2401 ttaacccatt cgccatcaat ataaggctgg ataggatctt tcgtgaagtc atgcacggtg
     2461 tcgttatttt tctgcggcac catatcgagg tgggcctgta agacgaccgg tttacgattt
     2521 tccatacctg cggtagcagg tttacgaatc aggatattac ctacctgatc gcgttcgaca
     2581 tggaaacctt tctcttttgc ccaaccaaca atgtattcag cgagttgctc ttcatgatag
     2641 gacgggtgag gaatagaaca gattttggca aaaatatccc acagcggctg tggagataat
     2701 tgagacagtt cagacacgtt aagtctcctt gtcgatcacc cgcaaaacag tattgcaggt
     2761 cacagggtta gcagaaaatg ttgtcaacac aagacaggct tgcgagatat gtttgagaat
     2821 accactttat cccgcgtcag ggagaggcag tgcgtaaaaa gacgcggact catgtgaaat
     2881 actggttttt agtgcgccag atctctataa tctcgcgcaa cctattttcc cctcgaacac
     2941 tttttaagcc gtagataaac aggctgggac acttcacatg agcgaaaaat acatcgtcac
     3001 ctgggacatg ttgcagatcc atgcacgtaa actcgcaagc cgactgatgc cttctgaaca
     3061 atggaaaggc attattgccg taagccgtgg cggtctggta ccgggtgcgt tactggcgcg
     3121 tgaactgggt attcgtcatg tcgataccgt ttgtatttcc agctacgatc acgacaacca
     3181 gcgagagctt aaagtgctga aatgcgcaga aggcgatggc gaaggcttca tagttattga
     3241 tgacctggtg gataccggtg gtactgctgt tgcgattcgt gaaatgtatc caaaagcgca
     3301 ctttgtcacc atcttcgcaa aaccggctgg tcgtccgctg gttgatgact atgttgttga
     3361 tattccgcaa gatacctgga tcgaacagcc gtgggatatg ggcgtcgtat tcgtcccgcc
     3421 aatctccggt cgctaatctt ttcaacgcct ggcactgccg ggcgttgttc tttttaactt
     3481 caggcaggtt acaatagttt ccagtaagta ttctggaggc tgcatccatg acacaggcaa
     3541 acctgagcga aaccctgttc aaaccccgct ttaaacatcc tgaaacctcg acgctagtcc
     3601 gccgctttaa tcacggcgca caaccgcctg tgcagtcggc tcttgatggt aaaaccatcc
     3661 ctcactggta tcgcatgatt aaccgtctga tgtggatctg gcgcggtatt gacccacgtg
     3721 aaatcctcga cgtccaggca cgtattgtga tgagcgatgc tgaacgtacc gacgatgatt
     3781 tatacgatac tgtgattggc taccgtggtg gcaactggat ttatgagtgg gccacccagg
     3841 cgatggtgtg gcaacaaaaa gcctgtgcgg aagaagatcc gcaactcagt ggtcgacact
     3901 ggctgcatgc ggctacgttg tacaacattg ccgcctatcc tcatctgaaa ggagatgacc
     3961 tggccgagca agcgcaggct ttatcaaacc gcgcctatga agaggccgcc cagcgtctgc
     4021 cgggcacgat gcggcagatg gagtttaccg tacccggcgg tgcgcccatc accggctttt
     4081 tgcatatgcc gaaaggcgat ggcccgttcc cgacagtatt aatgtgtggt ggtctggatg
     4141 cgatgcagac ggactattac agcctgtatg aacgttattt tgcgccgcgc ggcattgtga
     4201 tgctgactat tgatatgccg tcggtgggct tttcttcaaa atggaagctc acccaggact
     4261 ccagcctgtt gcatcagcac gtcttaaagg cgctgcctaa cgtaccgtgg gtggatcaca
     4321 ctcgcgtcgc ggcctttggt ttccgtttcg gcgctaacgt tgccgtgcgt ctggcatatc
     4381 ttgaatcgcc gcgtctgaaa gcggttgcct gtcttggtcc ggtagttcat accctgttga
     4441 gtgattttaa gtgccagcaa caggtgccgg aaatgtatct tgacgttctg gcgagtcgtt
     4501 tggggatgca tgatgcttcc gacgaagcgt tacgcgtgga gctgaatcgc tattcattaa
     4561 aagtgcaagg attgctggga cgtcgctgcc caacgccaat gttatcaggc tactggaaga
     4621 acgatccgtt cagcccggaa gaggactcac gcttaatcac ctcatcatct gctgacggta
     4681 aattattaga gatcccattt aacccggtgt atcggaattt tgacaaaggt cttcaggaaa
     4741 tcaccggctg gatcgaaaaa tgcttgtgtt aaaaatttgc taaattttgc caatttggta
     4801 aaacagttgc atcacaacag gagatagcaa tgacgttacc gagtggacac ccgaagagca
     4861 gattgatcaa aaaatttacc gcactaggcc cgtatattcg tgaaggtaag tgcgaagata
     4921 atcgattctt tttcgattgt ctggctgtat gcgtcaacgt gaaaccggca ccggaagtgc
     4981 gtgaattctg gggctggtgg atggagctgg aagcgcagga atcccgtttt acctacagct
     5041 accagtttgg tctgttcgat aaagcaggcg actggaagag tgttcctgta aaagatactg
     5101 aagtggttga acgactggag cacaccctgc gtgagtttca cgagaagctg cgtgaactgc
     5161 tgacgacgct gaatctgaag ctggaaccgg cggatgattt tcgtgacgag ccggtgaagt
     5221 taacggcgtg agtgaaatgt gccggatgca tcacatccgg caatatctat taaaactgat
     5281 acgtcatccc aatcgcgaca atatcatcat tattaatatt caatttgtta tcgctatcca
     5341 gttggttgat tttataatca acaaatgctg acatattttt gttgaaataa tacgtagcac
     5401 cgacgtcgat ataattaacc agatcttcac caccgatgcc ctcaatatct ttccctttcg
     5461 ataagacata acccagcgat ggacgcagac caaagtcaaa ctggtattga gcgaccgctt
     5521 caaagttctg tgtcttattg gcaaagccgc cagttattgg cgtcattttg cgagtttcag
     5581 aatagaaagt tgccagataa atattattgg catcgtattt cagacctgtt gcccatgctt
     5641 ctgcacgctt gcctgtgcca cggctttgca ggttctgctc gttggtgcga tctgagttgg
     5701 tataggcccc actaatggcg aaatcgctgc cgccaaagtc atatgtcaat gacgtgccga
     5761 agccatcgcc gttttgcttt ttaacgtcgc ggttttcgtt tttcccttga tattgcaggg
     5821 ttaagttcag gccatcgata acgccgaaga agtcggtgtt ccgatacgtc gccagaccgc
     5881 tggcgcgttt ggtcataaag ttgtcggtct gcgccgagga gtcgccacca aattccggga
     5941 acatatcggt cctggcttcc acgtcataca acgcgcccag cttacgacca taatcgaaag
     6001 aacccaaatc tttatatttc aacccggcaa aagcgagacg cgttttttgc tgtgcagtat
     6061 cactctctgc tttattaccg gcaaactctg cttcccaacg accataacca gtcagttgac
     6121 cgttaatttg tgtttcgcct ttaaaaccaa aacggatata actctggtcg ccatctttac
     6181 tgtcgttatc actcatataa tgcatggctt taactttgcc atagacatcc agtttattac
     6241 cgtctttgtt atatatttct gcggcctgta cggatgcaga tgccacaatg cccatcacca
     6301 ctaatgccag agtgctcttt ttcattttca ttcctgattt taattaacgc gcgaatattc
     6361 agcgggagag ccccgttgaa aacaggaaag tttttaacct gagattgtta aagatatatt
     6421 acagattaat aatattctta aaatgtggta atttattaaa tctgtaataa aagcgtaaac
     6481 aactgccgct aggcttgctg atcccgcgca acaaaacgcc atgctttgct cgcagatggt
     6541 tggcaaccga cgacagtcct gctaaaacgt tcgtttgata tcatttttcc taaaattgaa
     6601 tggcagagaa tcatgagtga cagccagacg ctggtggtaa aactcggcac cagtgtgcta
     6661 acaggcggat cgcgccgtct gaaccgtgcc catatcgttg aacttgttcg ccagtgcgcg
     6721 cagttacatg ccgccgggca tcggattgtt attgtgacgt cgggcgcgat cgccgccgga
     6781 cgtgagcacc tgggttaccc ggaactgcca gcgactatcg cctcgaaaca actgctggca
     6841 gcggtagggc agagtcgact gattcaactg tgggaacagc tgttttcgat ttatggcatt
     6901 cacgtcgggc aaatgctgct gacccgtgct gatatggaag accgtgaacg cttcctgaac
     6961 gcccgcgaca ccctgcgtgc gttgctcgat aacaatatcg ttccggtaat caatgagaac
     7021 gatgctgtcg ctacggcaga gattaaagtc ggcgataacg ataacctttc tgcgctggcg
     7081 gcgattctgg cgggtgccga taaactgttg ctgctgaccg atcaaaaagg tttgtatacc
     7141 gctgacccgc gcagcaatcc gcaggcagaa ctgattaaag atgtttacgg cattgatgac
     7201 gcactgcgcg cgattgccgg tgacagcgtt tcaggcctcg gaactggcgg catgagtacc
     7261 aaattgcagg ccgctgacgt ggcttgccgt gcgggtatcg acaccattat tgccgcgggc
     7321 agcaagccgg gcgttattgg tgatgtgatg gaaggcattt ccgtcggtac gctgttccat
     7381 gcccaggcga ctccgcttga aaaccgtaaa cgctggattt tcggtgcgcc gccggcgggt
     7441 gaaatcacgg tagatgaagg ggcaactgcc gccattctgg aacgcggcag ctccctgttg
     7501 ccgaaaggca ttaaaagcgt gactggcaat ttctcgcgtg gtgaagtcat ccgcatttgc
     7561 aacctcgaag gtcgcgatat cgcccacggt gtcagtcgtt acaacagcga tgcattacgc
     7621 cgtattgccg gacaccactc gcaagaaatt gatgcaatac tgggatatga atacggcccg
     7681 gttgccgttc accgtgatga catgattacc cgttaaggag ctggccgatg ctggaacaaa
     7741 tgggcattgc cgcgaagcaa gcctcgtata aattagcgca actctccagc cgcgaaaaaa
     7801 atcgcgtgct ggaaaaaatc gccgatgaac tggaagcaca aagcgaaatc atcctcaacg
     7861 ctaacgccca ggatgttgct gacgcgcgag ccaatggcct tagcgaagcg atgcttgacc
     7921 gtctggcact gacgcccgca cggctgaaag gcattgccga cgatgtacgt caggtgtgca
     7981 acctcgccga tccggtgggg caggtaatcg atggcggcgt actggacagc ggcctgcgtc
     8041 ttgagcgtcg tcgcgtaccg ctgggggtta ttggcgtgat ttatgaagcg cgcccgaacg
     8101 tgacggttga tgtcgcttcg ctgtgcctga aaaccggtaa tgcggtgatc ctgcgcggtg
     8161 gcaaagaaac gtgtcgcact aacgctgcaa cggtggcggt gattcaggac gccctgaaat
     8221 cctgcggctt accggcgggt gccgtgcagg cgattgataa tcctgaccgt gcgctggtca
     8281 gtgaaatgct gcgtatggat aaatacatcg acatgctgat cccgcgtggt ggcgctggtt
     8341 tgcataaact gtgccgtgaa cagtcgacaa tcccggtgat cacaggtggt ataggcgtat
     8401 gccatattta cgttgatgaa agtgtagaga tcgctgaagc attaaaagtg atcgtcaacg
     8461 cgaaaactca gcgtccgagc acatgtaata cggttgaaac gttgctggtg aataaaaaca
     8521 tcgccgatag cttcctgccc gcattaagca aacaaatggc ggaaagcggc gtgacattac
     8581 acgcagatgc agctgcactg gcgcagttgc aggcaggccc tgcgaaggtg gttgctgtta
     8641 aagccgaaga gtatgacgat gagtttctgt cattagattt gaacgtcaaa atcgtcagcg
     8701 atcttgacga tgccatcgcc catattcgtg aacacggcac acaacactcc gatgcgatcc
     8761 tgacctgcga tatgcgcaac gcccagcgtt ttgttaacga agtggattcg tccgctgttt
     8821 acgttaacgc ctctacgcgt tttaccgacg gcggccagtt tggtctgggt gcggaagtgg
     8881 cggtaagcac acaaaaactc cacgcgcgtg gcccaatggg gctggaagca ctgaccactt
     8941 acaagtggat cggcattggt gattacacca ttcgtgcgta aataaaaccg ggtgatgcaa
     9001 aagtagccat ttgattcaca aggccattga cgcatcgccc ggttagtttt aaccttgtcc
     9061 accgtgattc acgttcgtga acatgtcctt tcagggccga tatagctcag ttggtagagc
     9121 agcgcattcg taatgcgaag gtcgtaggtt cgactcctat tatcggcacc atttaaatca
     9181 ataagttaca catcattagt acgttcctta tttcttgact gggacaaatt tgggaccgat
     9241 gggttcagaa tcgagtctat ttgccgtgcg tgttcggtaa ggtgattagg tgcgaggtga
     9301 gcatatcgac gaaccatttc gatagactcc cagcctccca tttcctgtaa cactgataac
     9361 gggactccgg cctgaaccag ccaacttgcc caggtgtgtc tcaagtcgtg aaatctgaaa
     9421 tcatcaatac ctgctcgtct cagcgccgct ttccaggctg tgtttgcgtc ataccgcatc
     9481 ttcctgactg ttggcgcttt cgttccgtct ggtttggtac agctttcctt atacacaaat
     9541 acccaacggt gatgattccc gatttgtttt ttcaatacgc gacatgcagt atcattcagc
     9601 gcaacgccaa ttgcgcggtt tgatttactc tcttccgggt ttatccatgc cacc
//
LOCUS       DAJVUN010000148         9610 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.148, whole genome shotgun sequence.
ACCESSION   DAJVUN010000148 DAJVUN010000000
VERSION     DAJVUN010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9610
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.148"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            121..987
                     /gene="folD"
                     /locus_tag="OQQ76_003119"
     CDS             121..987
                     /gene="folD"
                     /locus_tag="OQQ76_003119"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HCS1969519.1"
                     /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN
                     PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLP
                     AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL
                     NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG
                     DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL
                     QACVEYHDPQGE"
     gene            989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ76_003120"
     CDS             989..1201
                     /gene="ybcJ"
                     /locus_tag="OQQ76_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308617.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein YbcJ"
                     /protein_id="HCS1969520.1"
                     /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA
                     VETRKRCKIVAGQTVSFAGHSVQVVA"
     gene            1309..1830
                     /locus_tag="OQQ76_003121"
     CDS             1309..1830
                     /locus_tag="OQQ76_003121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1969521.1"
                     /translation="MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLS
                     FKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSL
                     LDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLP
                     GMVLMGMLWWRRR"
     gene            complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ76_003122"
     CDS             complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="OQQ76_003122"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HCS1969522.1"
                     /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF
                     VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDA
                     LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL
                     DQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG
                     NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT
                     VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAG
                     GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG
                     LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE
                     DGPQGTTWRRK"
     gene            3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ76_003123"
     CDS             3425..3919
                     /gene="ppiB"
                     /locus_tag="OQQ76_003123"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase B"
                     /protein_id="HCS1969523.1"
                     /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV
                     INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV
                     VDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV
                     TVSE"
     gene            3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ76_003124"
     CDS             3922..4644
                     /gene="lpxH"
                     /locus_tag="OQQ76_003124"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HCS1969524.1"
                     /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE
                     AWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV
                     LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANS
                     KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA
                     WHTEGSMVKVTADDVELIHFPF"
     gene            4762..5271
                     /gene="purE"
                     /locus_tag="OQQ76_003125"
     CDS             4762..5271
                     /gene="purE"
                     /locus_tag="OQQ76_003125"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HCS1969525.1"
                     /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSA
                     HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD
                     SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL
                     ENPDPRGAA"
     gene            5268..6335
                     /gene="purK"
                     /locus_tag="OQQ76_003126"
     CDS             5268..6335
                     /gene="purK"
                     /locus_tag="OQQ76_003126"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HCS1969526.1"
                     /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS
                     VITAEIERWPETVLTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAD
                     RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSG
                     EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG
                     YVGVMTMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITALPLPQPVV
                     NNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA
                     LIPLLPPEYASGVIWAQSKFS"
     gene            complement(6472..7365)
                     /locus_tag="OQQ76_003127"
     CDS             complement(6472..7365)
                     /locus_tag="OQQ76_003127"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HCS1969527.1"
                     /translation="MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYR
                     LAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQIPPVT
                     TVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQP
                     RKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLATTLLAEQINADGL
                     VILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRSKPAW
                     IGALSRIEETLAGEAGTCISL"
     gene            complement(7362..8177)
                     /locus_tag="OQQ76_003128"
     CDS             complement(7362..8177)
                     /locus_tag="OQQ76_003128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HCS1969528.1"
                     /translation="MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHR
                     QGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPP
                     SHPQPLAAAWMQRAEETGLFGPLAMAASDPLTAELRQFRHCFQAALNGVKTDWRHWLG
                     KGPGLTPSHDDTLSGMLLAAWYYGALDARAGRPFFACSDNLQLVTTAVSVSYLRYAAQ
                     GYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQEKP"
     gene            complement(8188..9447)
                     /locus_tag="OQQ76_003129"
     CDS             complement(8188..9447)
                     /locus_tag="OQQ76_003129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009029994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HCS1969529.1"
                     /translation="MFTSVAQANAAVIEQIRRARPHWLDVQPAFSLISELNEGKTLLH
                     AGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAMLDQGEVNFIPCHHVNAVGPMG
                     GITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLS
                     AALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEV
                     IDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT
                     APVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAR
                     AVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ
                     IGAGTVRAPLACFEQALEALAESMGIG"
BASE COUNT         2114 a         2735 c         2562 g         2199 t
ORIGIN      
        1 aaccttcgca agaggtcgct tcacgcgata aatctgaaac gaaacctgac agcgcgcccc
       61 gcttctgaca aaataggcgc atccccttcg acctacgtaa cagatggaat cctctctctg
      121 atggcagcaa agattattga cggtaaaacg attgcgcagc aggtgcgctc tgaagttgct
      181 caaaaagttc aggcgcgtat tgcagccgga ctgcgggcac caggactggc cgttgtgctg
      241 gtgggtagta accctgcatc gcaaatttat gtcgcaagca aacgcaaggc ttgtgaagaa
      301 gtcgggttcg tctcccgctc ttatgacctc ccggaaacca ccagcgaagc ggagctgttg
      361 gagcttatcg atgcgctgaa tgccgacaac accatcgatg gcattctggt tcaactgccg
      421 ttaccggcgg gtattgataa cgtcaaagtg ctggaacgta ttcatccgga caaagacgtg
      481 gacggtttcc atccttataa cgtcggtcgt ctgtgccagc gcgcgccgcg tctgcgtccc
      541 tgcaccccgc gcggtatcgt cacgctgctt gagcgttaca acattgatac cttcggcctc
      601 aacgccgtgg tgattggcgc atcgaatatc gtcggtcgtc caatgagcat ggaactgttg
      661 ctcgcaggtt gcaccactac cgtgactcac cgtttcacta aaaatctgcg tcaccacgta
      721 gaaaatgccg atctgttgat cgttgccgtc ggcaagccgg gctttattcc tggtgactgg
      781 atcaaagaag gcgcaattgt gattgatgtc ggcatcaacc gtctggaaaa tggcaaagtt
      841 gtgggcgacg tcgtgtttga agacgcggct aaacgcgcct catacattac gcctgttccg
      901 ggcggcgttg gcccgatgac ggttgccacg ctgattgaaa acacgcttca ggcgtgcgtt
      961 gaatatcatg atccacaggg tgagtaacat ggcgacattt tctttaggta aacacccgca
     1021 cgttgagctg tgcgatttgc tgaaactgga aggctggagc gaaagcggcg cgcaggcgaa
     1081 aatcgcgatt gccgaaggcc aggtgaaagt cgacggtgcg gttgaaacgc gcaaacgctg
     1141 caaaatcgtc gccggtcaga cagtgagttt tgcaggtcac agcgtacagg ttgttgcctg
     1201 atccctttcc cggcctgtat caacaggccg gttctctttt cagacttttg ccctctacgc
     1261 cccgttcatc catgctgata gcatcgacat tttgccgaag cgaccatcat gccaaccgtt
     1321 attacgcacg ccgccgttcc cctatgcatt ggtttagggt tgggttcgaa agtcatccct
     1381 ccgcgtctgt tatttgccgg aatcatcctg gcgatgctgc ccgacgccga cgtattgtcg
     1441 tttaaatttg gcgttgctta cggcaatgtt tttggtcatc gcgggtttac ccattcgctg
     1501 gtgtttgcgt ttgttgtccc gctgttatgt gtgctgattg gacgccgatg gttcagggct
     1561 gggctgattc gctgctggct gtttttaacc gtctcgttgc tatcgcacag cttgctggat
     1621 tcggtaacca ctggcggtaa gggcgttggc tggctgtggc cgtggtcaga tgaacgcttt
     1681 ttcgctccct ggcaggtgat taaagtcgcg ccgtttgcat tgtctcgtta caccacgccg
     1741 tacgggcatc aggtgataat ttctgaattg atgtgggtgt ggttgccggg gatggtgctt
     1801 atgggaatgt tgtggtggcg caggcgataa ccggatgcga aaactcgcat ccggcaacag
     1861 cgcaattact tacgacgcca ggtggtccct tgcgggccat cttccagcac gatccccatc
     1921 tcgttaagac ggtcacgcgc cgcatctgcc gccgcccagt ctttcgcttt acgggcatcc
     1981 agacgctgtt gaattaacgc ttcaatctca gccacttcgc tgtcgtctgc ctgcgcgccg
     2041 ctttgcagga acgcttccgg ttcttgctcc agcaggccca atacagcgga aagtttacgc
     2101 aggtgagatg ccattgcatt cgccgctgcc atatcttctg ctttcagacg gtttacttca
     2161 cgcgccatat caaacagtac ggaataggct tccggggtgt tgaaatcgtc gtccatcgct
     2221 tcaataaagc gcgcttcaaa cgcttcgcca ccggcaggcg caacggtttt atctgtgccg
     2281 cgcagcgcag tgtagagacg ctccagcgcc gcacgcgtct gcttcaggtt ctcttcgctg
     2341 tagttcaact ggctgcgata gtggcccgac atcaggaagt aacgcacggt ttccgcgtcg
     2401 tagtatttca gcacatcgcg cacggtaaag aagttaccca gcgatttgga catcttctcg
     2461 cggtcaacca tcaccattcc ggagtgcatc cagtagttca catactgacc atcatgggca
     2521 caggtggact gcgcgatttc gttctcgtgg tgcgggaaca tcaggtctga accgccgccg
     2581 tggatatcaa agtggttacc cagctgcttg cagttcatgg ccgaacattc aatgtgccag
     2641 ccaggacgac ccgcgcccca cggagacggc cagctcggtt cgccctcttt cgacatcttc
     2701 cacagaacga agtccatcgg gttgcgtttg tcatcaacca cgtcaacgcg cgcgccagcc
     2761 tgcagctggt cgagatcctg acgcgacagc acgccataag tcggatcggt cgggacgtcg
     2821 aacatcacgt cgccgttgtc agccacataa gcgtgacctt tggcgatcag ttgttcagtg
     2881 agttcaataa tttctgcgat atggtgcgtc gcgcgcggct ccatatccgg gcgcagaatg
     2941 ttcaaagcat caaaatcttt gtgcatttcg gcgatcatgc gatccaccag cgccacaaag
     3001 ctttcgccat tttcattggc gcgtttgatg attttgtcgt cgatatcggt aatgttgcgc
     3061 acatacttca gcttatagcc gaggaaacgc agatagcgcg caaccacgtc aaaagcaaca
     3121 aaggtacgcc cgtgaccgat atgacagaga tcgtaaacgg tgattccaca cacgtacatg
     3181 ccgacttccc cggcgtgaat aggcttaaat tcctcttttt ggcgtgtcag agtattgaag
     3241 atttttagca tcgaagattc cgtttagaca tgtgtgggta attgagttgc gtataatacc
     3301 catatttccc gcgcgaatca gcatacattg cgtgatgatc cgatcgtgcg gttatgctat
     3361 aacaccaccc tatatatgac ccgaaccggg ttgaagcacc aatcaaacgg aacaggatgc
     3421 aaaaatggtt actttccaca ccaatcacgg cgatattgtc atcaaaactt ttgacgataa
     3481 agcacctgaa acagttaaaa acttcctgga ctactgccgc gaaggttttt acaacaacac
     3541 cattttccac cgtgttatca acggctttat gattcagggc ggcggttttg aaccgggcat
     3601 gaaacaaaaa gccaccaaag aaccgatcaa aaacgaagcc aacaacggtc tgaaaaatac
     3661 ccgtggtacg ctggcaatgg cccgtactca ggctccgcac tctgcaactg cacagttctt
     3721 catcaacgtg gttgataacg acttcctgaa cttctctggc gaaagcctgc aaggttgggg
     3781 ctactgcgtg tttgctgaag tggttgaagg catggacgtg gtagacaaaa tcaaaggtgt
     3841 tgcaaccggt cgtagcggta tgcaccagga cgtgccaaaa gaagacgtta tcattgaaag
     3901 cgtgaccgtt agcgagtaat cgtggcgaca ctctttattg cagatcttca tctctgcgtg
     3961 gaagaaccgg cgatcaccgc cggttttctg cgttttttag cgggggaagc tcgcaaggcc
     4021 gacgcgctgt atattcttgg cgatctgttt gaagcgtgga ttggcgacga cgatcccaat
     4081 ccactccatc gccagatggc ggcagcgatc aaagcggtgt ccgattccgg cgttccctgt
     4141 tatttcattc atggcaaccg tgattttctg ctcggcaaac gctttgcccg tgaaagtggc
     4201 atgacgttat tgccggaaga aaaggtgctc gaactttatg gccgccgggt gttgattatg
     4261 catggcgaca cgctgtgcac cgatgacgcg ggttatcagg cttttcgcgc caaagtccac
     4321 aaaccctggc tgcaaatgct attcctcgcc ctgccgttgt ttgtgcgcaa acgcattgcc
     4381 gcgcgaatgc gcgcgaacag caaagaagcc aacagcagta aatcgctggc gatcatggac
     4441 gttaaccaaa acgcagtggt cagtgcgatg gaaaaacatc aggtgcaatg gctgatccac
     4501 gggcataccc atcgcccggc ggtgcatgaa cttatcgcca accagcaacc tgcttttcgc
     4561 gtggtactgg gtgcctggca tacggaaggt tcgatggtga aagtcacggc ggatgacgtt
     4621 gagctgattc attttccgtt ttaaaaaaac cacaactttg ctgatttcac agccacgcaa
     4681 ccgttttcct tgctctcttt ccgtgctatt ctctgtgccc tctaaagccg agagttgtgc
     4741 accacaggag ttttaagacg catgtcttcc cgcaataatc cggcgcgtgt cgccatcgtg
     4801 atggggtcca aaagcgactg ggctaccatg cagttcgccg ccgaaatctt cgaaatcctg
     4861 aatgtcccgc accacgttga agtggtttct gctcaccgca cccccgataa actgttcagc
     4921 ttcgccgaaa gcgccgaaga gaacggttat caggtgatta ttgcgggcgc aggtggcgca
     4981 gcgcacctgc caggcatgat tgccgccaaa acgctggtgc cggtgctggg cgtgccagta
     5041 cagagcgccg cactgagcgg tgtcgatagc ctctactcca tcgtacaaat gccgcgcggc
     5101 attccggtgg gtacgctggc gattggtaaa gctggcgcgg caaacgcggc attactggca
     5161 gcacaaattc tcgcgactca cgataaagag ctacaccagc gtctgaatga ctggcgcaaa
     5221 gcccagaccg acgaagtgct ggaaaacccg gacccgcgag gtgcggcatg aaacaggttt
     5281 gcgtcctcgg taacgggcag ttaggccgta tgctgcgtca ggcaggcgaa ccgttaggca
     5341 ttgctgtctg gccggtcggg ctggacgctg aaccggcggc ggtgcctttt caacaaagcg
     5401 tgattaccgc tgagatcgaa cgctggccgg aaaccgtatt aacccgcgag ctggcgcgtc
     5461 atccggcctt tgtgaaccgc gatgtgttcc cgattattgc tgaccgtctg actcagaagc
     5521 agcttttcga taagctccac ctgccgaccg cgccgtggca gttacttgcc gatcgcagcg
     5581 agtggcctgc ggtgtttgat cgtttaggtg aactggcgat tgttaagcgt cgcactggtg
     5641 gctatgacgg tcgcggtcaa tggcgtttac gcgccaatga aaccgaacag ttaccggcag
     5701 agtgttacgg cgaatgtatt gtcgagcagg gcattaactt ctctggtgaa gtgtcgctgg
     5761 ttggcgcgcg cggctttgat ggcagcaccg tgttttatcc gctgacgcat aacctgcatc
     5821 aggacggtat tttgcgcacc agcgtcgctt ttccgcaggc caacgcacag cagcaggcgc
     5881 aagccgaaga gatgctgtcg gcgattatgc aggagctggg ctatgtgggc gtgatgacga
     5941 tggagtgttt tgtcaccccg caaggtctgc tgatcaacga actggctccg cgtgtgcata
     6001 acagcggtca ctggacacaa aacggtgcca gcatcagcca gtttgagctg catctgcggg
     6061 cgattaccgc tctgccgtta ccgcaaccag tagtgaataa tccgtcggtg atgatcaatc
     6121 tgattggtag cgatgcgaat tatgactggc tgaaattgcc gctggtgcat ctgcactggt
     6181 acgacaaaga agtccgtccg gggcgtaaag tggggcatct gaatttgacc gacagcgaca
     6241 catcgcgtct gactgcgacg ctggaagcct taatcccgct gctgccgcca gagtatgcca
     6301 gcggcgtgat ttgggcgcag agtaagttca gttaagcagg tgctcatttg attgccggat
     6361 gcggcgtaaa cgccttatcc ggcttaccgc tccggtaccc attgtaggcc tgataagacg
     6421 cgtcaagcgt cgcatcaggc atggtgcacc gattgccgga tgctctcatc actacagcga
     6481 aatacaggtc cccgcttcgc ccgccagcgt ctcttcaatt cgcgataacg ccccaatcca
     6541 cgcgggttta ctacggcttc tgacataacc actcaccgcc gttaccttcg gccccatcga
     6601 accatcggct ttggcaaatg gcgctaactc atccggtgtg gcatggcgaa tggcacgttg
     6661 ctgcggcgtt ccccagtttt catataccgc atcagcatcg gtgaggatca ccagtccatc
     6721 ggcattaatc tgctcggcga gcaacgtagt ggcgagatct ttatcaatca ccgcttcact
     6781 ccctgcccca tcttccgtca caggcacacc gccgccgcca ctgcaaatca ccacatgccc
     6841 ctctttgagc aacaactcga tggcttcgct gtcgagaatt ttacgcggtt gcggagacgc
     6901 caccacccgg cgcaaatatt taccatcacg tttcatctgc cagccgtaag ccgcttccag
     6961 tgcctcttgt tcttctggct gataaaccgg accaataaat ttctctggct gcaaaaacgc
     7021 cggatcatca ggcgaaacct caatgcgcgt cagcaccgtc gtaacaggcg gtatctgcgg
     7081 ctgtgcgctc aagctctgcg ccagcatata gccaatcatc ccctggcttt ccgccaccag
     7141 cacatccagc ggatacggtt ctacctcttt ccacgccaga ttctgtaacg ccagcagccc
     7201 cacctgcggc ccgttgccgt gaacaatcgc cagccgataa gaacgggcca ggcgtgccag
     7261 cgcgggtaca gcactggcga tattgcgata ttgattttcc gccgtcagcg cctcaccgcg
     7321 ctggagtaag gcgttgcccc caagagctac aaccagtgtt ttcatggttt ttcttgtaat
     7381 aattgttggc caagccagaa ccccagcagc gtatctgccc ctgacgtatg ccccagcgcc
     7441 agcagcgaat caatcgcaac agcggtacgt ttcgggcaac tcagagcatg gacaaagtgc
     7501 aggagtggcg aggcgaaata tccttgcgcg gcataacgta aataactgac gctcaccgct
     7561 gtggtaacga gttgaagatt gtcggaacag gcaaaaaacg ggcgaccggc gcgcgcatct
     7621 aaagcgccat aataccaagc cgccagcagc attccgctca acgtgtcatc atgacttggc
     7681 gttaatccgg ggcctttacc cagccagtgc cgccagtcgg tcttaacgcc attgagcgcg
     7741 gcctgaaaac agtgacgaaa ctggcgtaat tcagcggtca gcggatcgct tgccgccatc
     7801 gccagtggtc cgaaaagtcc ggtttcctcc gcgcgttgca tccatgcagc tgcaagcggt
     7861 tgaggatgcg aaggcggcgt aatacgcagc aaacaataac gctgtggctg tttaaccgtg
     7921 aaacgcccga ggcgaatccc ttgagccaca acctgtggtc gttcattgcc gcataatcca
     7981 ccgcataacg catcgaattg cgcgcggcga agcacccatc ctccggggcc gaaaccacta
     8041 ccctgacgat gcagcgttaa cagttcgccg ctttccgtca tcaggttaat cgcccgccgc
     8101 cacactcccg ctaaccgcca ggactggcga taattcggtg cgctactgct ggcaagcaga
     8161 ggatggatga tcgtcattgc gcgttcctca accaatcccc atgctttcag ccagtgcttc
     8221 cagcgcctgt tcaaagcacg ccagcggtgc ccgcacggtg cctgcgccaa tctgcccgat
     8281 ccccgcctct ttatgggcga taccggtatt gatgagtggc gtaatgccgg tttctaccac
     8341 gcgacgaata tccagcccca ggcacgcgcc ctgaaaatcc cagcctggga tctgcaactg
     8401 catattgcgt tcaaggtaaa tttccgccat ctcttcagat accgccctgg ccgcttccat
     8461 gccacccgca ccgacaaagc gcgttacgcc aggcgctgcg atcattgccg cacctccgat
     8521 accaaaggtt tcggtaatcg cgctatcgcc catatccggg ttcgcctgct cctgcgagaa
     8581 gccggtgaaa aacagacctt gcggagtgtt tacaggcgca gtaaaccagc gttcacccag
     8641 cccgcttacc cgaatcccga acatattgcc gttgcgggtc atagccgtaa cgatgctgcc
     8701 tgcgcggatc atcgcgccag catccatcgc cgccttgcag taggccatcg cgaggttgag
     8761 gaagaactga tcggtcacgc tgaggaaatc gatcacttcc gcaatgtgct gtttatcatg
     8821 atcgaggcga gcaatttgtg gggccagcgt acgcattaac agtgctgagg aagcaatatt
     8881 gcgttgatgg aactcatcgc ccatcgtaat gccctgcgcc atcatcgccg tgagatcgat
     8941 accgcgctcc atgcgcccca gcgccgcgct taatactggc attaacacat cgcgcatcca
     9001 gcgatggcga gtcaggacat cttcgccgta agcgccaaaa cgcatcactt tgccgatacc
     9061 ttcgttgagg ttgcagtacg cccggttgcc gtcggtcacg ttctcgacca ccagcatcgg
     9121 catactggca gaagtaatgc cgcccattgg cccgacggca ttcacatggt gacaaggaat
     9181 gaagttcact tccccctggt ccagcatcgc cagtgcctgc gcttcatctt tcgcccagcc
     9241 ttcgaacaga catgcgccca cgcacgcccc tttcatgggt ccggtcatct cctgccagcg
     9301 cattggcggc ccggcgtgaa gcagtgtttt gccctcgttt agttcgctga taagtgaaaa
     9361 agccggttgc acatccagcc agtgtggacg agcacgacga atttgttcga taaccgcagc
     9421 attggcttgc gccactgatg taaacatggg aaccccttat tgcaaacgtt ctaataaacg
     9481 agccagtttt ttattgccgc cggcgactgg cgaccattgg taatgcacaa ccggtttgct
     9541 ggcgctttgt agctccagcg caaagctgcg taatccgatg ttaatcacgg cgacgttttc
     9601 cagtaatgac
//
LOCUS       DAJVUN010000149         9597 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.149, whole genome shotgun sequence.
ACCESSION   DAJVUN010000149 DAJVUN010000000
VERSION     DAJVUN010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9597
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.149"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(156..896)
                     /locus_tag="OQQ76_003130"
     CDS             complement(156..896)
                     /locus_tag="OQQ76_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative stress defense protein"
                     /protein_id="HCS1969530.1"
                     /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI
                     ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG
                     KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA
                     AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA
                     AIQFDDQVDVVFQLEPVDQQPAKTPAAQ"
     gene            complement(989..1624)
                     /gene="argO"
                     /locus_tag="OQQ76_003131"
     CDS             complement(989..1624)
                     /gene="argO"
                     /locus_tag="OQQ76_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine exporter ArgO"
                     /protein_id="HCS1969531.1"
                     /translation="MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCA
                     ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAE
                     VLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF
                     FGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS"
     gene            complement(1763..2623)
                     /gene="mscS"
                     /locus_tag="OQQ76_003132"
     CDS             complement(1763..2623)
                     /gene="mscS"
                     /locus_tag="OQQ76_003132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small-conductance mechanosensitive channel MscS"
                     /protein_id="HCS1969532.1"
                     /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII
                     ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA
                     AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG
                     KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD
                     REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVN
                     FKRVKEDKAA"
     gene            complement(2981..4060)
                     /gene="fbaA"
                     /locus_tag="OQQ76_003133"
     CDS             complement(2981..4060)
                     /gene="fbaA"
                     /locus_tag="OQQ76_003133"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HCS1969533.1"
                     /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN
                     AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG
                     VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK
                     YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT
                     IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLSFVFHGGSGSTAQEIK
                     DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW
                     LRAGQTSMIARLEKAFQELNAIDVL"
     gene            complement(4275..5438)
                     /gene="pgk"
                     /locus_tag="OQQ76_003134"
     CDS             complement(4275..5438)
                     /gene="pgk"
                     /locus_tag="OQQ76_003134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HCS1969534.1"
                     /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI
                     ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA
                     EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV
                     ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA
                     NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVSTEFSETAPATLKSVND
                     VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA
                     FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK"
     gene            complement(5488..6507)
                     /gene="epd"
                     /locus_tag="OQQ76_003135"
     CDS             complement(5488..6507)
                     /gene="epd"
                     /locus_tag="OQQ76_003135"
                     /EC_number="1.2.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HCS1969535.1"
                     /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM
                     AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV
                     YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI
                     IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG
                     ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV
                     DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA
                     TVAFR"
     gene            6879..7310
                     /locus_tag="OQQ76_003136"
     CDS             6879..7310
                     /locus_tag="OQQ76_003136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1969536.1"
                     /translation="MMTLPYPYSSSARFYALRLLPGQEVFSQLHAFAQQHQLHAAWIA
                     GCTGSLTDVALRYARQEGTTLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTMLGGHM
                     MPGCTVRTTLELVIGSLEELAFSRQPCALSGYDELHISPVK"
     gene            7333..7911
                     /locus_tag="OQQ76_003137"
     CDS             7333..7911
                     /locus_tag="OQQ76_003137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HCS1969537.1"
                     /translation="MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLI
                     SAVLLGPVIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV
                     VVSGVIITLAVTVVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL
                     VDKILTAVIVWLLLRQLPIRTTRHFPAMAAVR"
     gene            7912..8619
                     /locus_tag="OQQ76_003138"
     CDS             7912..8619
                     /locus_tag="OQQ76_003138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HCS1969538.1"
                     /translation="MHPFTSLTLWALAACTTLILPAQTILPIYSAATFFCLIALKATR
                     RRAKYVVWLMFSLGAGLWLVHGGWLPEWLSGTPRSPERWSHAITLWLRILAIVSTSQL
                     WMQYVPVQCFIRALFASRLPPGVAYLFAGPLLVVEQLKRQLAIIHEAQRARGVPLDEG
                     WYQRLRAMPALIIPLTHNALNDLAVRGAALDMRAFRIHNRRTTLWAPADSTLQRVARY
                     TMILLMLTEFGAWIWLR"
     gene            8607..9284
                     /locus_tag="OQQ76_003139"
     CDS             8607..9284
                     /locus_tag="OQQ76_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HCS1969539.1"
                     /translation="MVTLEQFRYCPTHSTHPPFCYDFHYVKPGMVAIFGDNGSGKSTL
                     AQLMAGWYPDFLPGEITGTGTLLGTPIGHLPLNEQSATIQLVQQSPYLQLSGCTFSVE
                     EEVAFGPENLCLAEAEIMARIDAALTLTECQPLRHRHPATLSGGETQRVVIACAIAMQ
                     PKLLILDEAFSRLTPQASEMLLQRLQHWAFERGSLIILFERHRTPFLNYCQQAWQLQN
                     GALQPLC"
     gene            9278..>9597
                     /locus_tag="OQQ76_003140"
     CDS             9278..>9597
                     /locus_tag="OQQ76_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1969540.1"
                     /translation="MLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKST
                     LLRVMAGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFG
                     LKLQ"
BASE COUNT         2300 a         2532 c         2401 g         2364 t
ORIGIN      
        1 gcatccttgt ccgcttaacc gtttcagtca gcctatcctt gatgaaaccg cgagcaaaga
       61 taggtgatta cgtcatggtt ttacagaaaa ttacagaaaa aggaggcaat atcgggtaaa
      121 ggcattagcc cgacgaatac gtcgggctac aagtattatt gtgctgcagg tgttttagcg
      181 ggttgttgat ccacaggttc taactggaag accacatcga cctgatcatc aaactgaata
      241 gcggcctgct cgtaagtttc ctgggcagac accggcgcgg catcggcttt catcatccgc
      301 accattgggc tgggctgata gttggaaaca tggtagcgca cgctatatac cggccccagt
      361 ttacgatgaa agccgttcgc cagttcctgc gcctgatgaa tcgcgttatc aatcgctgcc
      421 ttacgcgctt tgtctttata ggcatccggc tgcgccacgc ccagcgacac tgaacgaatt
      481 tcgttaagac ccgccttcag cgcgccatcc agcaaggaat tcagtttgtc taactgacgg
      541 agcgtgactt ccaccgttct cacagcgcgg tagcctttca ggatactttt accatcctga
      601 taatcataat ctggctgggt gcgtaaattc gctgagctga tatctttttt cgcgatctga
      661 ttgagttcaa ggaaggaaat gtattgtgcg acgcgctcat ctgcctgttt cttggctgta
      721 gcggcatcct tcgcggccac gttaacttca atcgcaagag tggcaatgtc tggcaccgca
      781 tccacacttg ccgtaccgga ggtgacaata tgcggtccat ccggcaattc gttagcctgc
      841 gctgccatcc cgctaatacc cattaatgcc gctagggcga taactttgaa cttcacgtta
      901 gtctctccgt gttaattgac ttgcccaaaa ttcaggacct ctggaggcaa gcttagcgcc
      961 tctgttttat ttttccatca gatagcgcct aactgaacaa ggcttgtgca tgagcaatac
     1021 cgtctctcgc cagctgcaag gctataaacc acatgacaca tcccactacc agattgataa
     1081 tgcgctgtga ttttgccgtg cgcaggcgcg gtgccagcca ggctgcgaga atagccagac
     1141 caaagaacca caggaaagag gcgctaattg tcccgagcgc aaaccaacgt tttggttcga
     1201 cgtcaagctg cccgccaagg ctgcccagta caacaaaagt atccaggtaa acatgcggat
     1261 tcagccaggt cactgccaac atggtggcga taattttcca tctgccttgc ttcaggactt
     1321 cggcactagc taactcaata ttactactca tcgctgtttt aaaagcgcca aaaccatacc
     1381 agagcaagaa gactacgccg ccccaggtga ccagcgccag caaccacggc gactgcatca
     1441 ataacgcgct accaccaaaa atccccgcgc aaatcaggac caaatcgctg atagcgcaaa
     1501 gtaaggcaat cataatgtgg tactgacgac gaatgccctg attcatcaca aaagcatttt
     1561 gtgggccgag cggcagaatc atagctgccc caagagcaag accttgaaag taataagaaa
     1621 acacgttgga tattccgaat taagtatctg atgcagagac tatatcgcga gattgttatt
     1681 agcggaaatt gataatatta attggcaatc agaataacta ataagagaga ggccagagag
     1741 tattatctgg cctcagcgtt gattacgcag ctttgtcttc tttcacccgc ttaaagttca
     1801 catccatttg cgggtacggg aagctgatac cggcggcatc aaattcacgt ttaatacgct
     1861 ccagcacatc ccagtacacg ttttgcagat cgccgctgtt gctccagacg cggaccacga
     1921 aattaatcga cgatgcacca agttcgttca ggcgcacagt catttcgcga tctttcaaaa
     1981 tgcgatcttc agactggata atattggtca ggatctgctt aacctgatcg atatcggaat
     2041 catacgccac gccaataata aattcgttac ggcgaactgg ctcgcgggag aagttaataa
     2101 tatttccggc aataatttta ccgttcggaa taacgataat tttaccgtct gcagtacgca
     2161 tggtggtgga gaaaatctgc acactcagca cagtaccggc tacgccgccg aggtcaacat
     2221 attctccggc acggaacggt cggaacatga caagtaacac gccagcggcc aggttagaaa
     2281 gtgacccctg caaagccaga ccaacagcta agcctgcggc accgagtaca gcaatgactg
     2341 acgctgtttg tacacccacg cgtcccaggg cagcgattag cgtaaaggcg ataataccgt
     2401 aacggactaa tgcagaaaga aaatcagcaa cagtggcatc gattttacgg gagatcatca
     2461 ggcgattcac cgcgttggaa atcatccgcg cgataatcaa accaacgatg atgatcgcga
     2521 gtgccgccac gatgtttact gcataactta gcagcagcgc ctggttagct accagccagc
     2581 ttcccgcgcc gtttatgcta tcgacaacat tcaaatcttc cattcaatat tccttttcaa
     2641 ctgactcaaa atggagaaat acactccgcc gccttatgac gggcagtctg acaagggtaa
     2701 acaataaagc ataattttgc caaatagatc acagatttct catctgaatc accttgcttt
     2761 tggcgaaaaa atccccgcag agcggggctc agacagatat caatgtgcgc tttgtcatgc
     2821 cggatgcggc gtgaacgcct tatccggcct acaaaaacct gcaaattcaa tatattgcag
     2881 gatacgtgta ggcctgataa gcgtagcgca tcaggcaatt ttgcttttgg cgaaaaaaag
     2941 acccgcagag cgggccttga gataagcaga aaggaatatc ttacagaacg tcgatcgcgt
     3001 tcagttcctg gaatgctttt tccagacgag cgatcatcga agtctgaccg gcacgcagcc
     3061 atacgcgcgg atcgtagtat ttcttgttcg gctgatcttc gcctttcggg ttacccagct
     3121 gaccctgcag ataagcttcg ttcgctttgt agtagttcag aacgccttcc caggttgccc
     3181 attgggtatc ggtatcgatg ttcattttca ctacgccgta gcttacggag tctttgattt
     3241 cctgagcagt agaaccggaa ccaccgtgga atacgaagct caggctgttg tgcggcaggt
     3301 tgtgtttctt agaaacatat tcctgagaat cacgcaggat ggtcggagtc agaaccacgt
     3361 tacccggctt gtaaacaccg tgtacgttac cgaaggacgc agcgatggtg aaacgcgggc
     3421 tgattttgct cagctcggtg tatgcgtaat caacgtcttc cggctgggtg tacagtgcag
     3481 aagcgtccat gtggctgttg tccacgccgt cttcttcacc accggtgcaa cccagttcga
     3541 tttccagagt catgccgatt ttggacatac gctccaggta tttagagcag atttcgatgt
     3601 tctcttgcag agattcttca gacaggtcga tcatgtgaga agagaacagc ggcttaccgg
     3661 tagctgcgaa gtgtttttca cccgcgtcca gcagaccgtc gatccacggc agcagtttct
     3721 tcgcgcagtg gtcagtgtgc aggataaccg gaacaccata atgttcagcc atctggtgaa
     3781 cgtgatgcgc accagagatc gcgcccagga tagcagcacc ctgcggaacg tcagatttca
     3841 cgcctttacc agcgataaag gaagcaccac cgttggagaa ctgaacgata accggcgctt
     3901 taactttagc agcagtttcc agtacggcgt tgatggagtc agtaccgacg cagtttactg
     3961 ctggcagtgc gaagttgttt tcttttgcta cctggaaaac tttctgtacg tcatcaccag
     4021 tgattacgcc aggttttacg aaatcaaaaa tcttagacat gtctcttgtc ctgtatcgtc
     4081 gggccttata ctcatcatac ttcaagttgc atgtgctgcg tctgcgttcg ctcaccccag
     4141 tcacttactt atgtaagctc ctggggattc actctcttgt cgccttcctg caactcgaat
     4201 tatttagagt atgaaaaaat gcgtgctcta aaagcgcgct gaaacaaggg caggtttccc
     4261 tgccctgtga ttttttactt cttagcgcgc tcttcgagca tcgctactgc aggcagtact
     4321 ttaccttcca cgaattcgag gaatgcgccg ccgccagtgg agatgtagga gattttgtca
     4381 gcaatgccga acaggtcgat tgctgccaga gtgtcgccgc cgccagcgat ggagaacgct
     4441 tcgctgtctg cgatagcgtt agccacgatt tcagtacctt tgcggaagtt cgggaattcg
     4501 aacacgccaa ccggaccgtt ccacagaatg gttttcgcat tcttcaggat ttcagccagt
     4561 tcctgagcgg aagcatcacc gatatccagg atctgctcgt cagctttcac atcgttaaca
     4621 gatttcaggg tagccggtgc agtttcagag aactcggttg atacgcgaac atcagacgga
     4681 accgggatgt tgcaggtggt cagcagacgt ttagcttcgt caaccaggtc agcttcgtac
     4741 agggatttac ccacatcgtg gccttgtgcc gcgataaagg tgttagcgat accaccacca
     4801 acaatcagct ggtcagcgat tttagacagg gagtccaaaa cggtcagttt ggtagatact
     4861 ttagaaccac caacgatagc caccatcggg cgagcaggtt ctttcagtgc tttacccagc
     4921 gcgtccagtt cagctgccag cagcgggcct gcgcacgcaa cgtcagcgaa tttaccgata
     4981 ccgtgagtag aagcctgcgc gcggtgagca gtaccgaatg cgtccattac gaacacgtca
     5041 cacagtgcag cgtatttttt ggacagggtt tcgtcgtctt tcttctcgcc tttgttgaag
     5101 cgaacgtttt ccagaacaac cagttcacct tcagcaacgt caacgccgtc gaggtaatct
     5161 ttaaccagac gaaccgggtt agacagtttg tctttcaggt agttaacaac cggcagcaga
     5221 gagaattctt cgttgtactc gccttcggta ggacgaccca ggtgggaagt taccatcact
     5281 tttgcgcctt gtttcagggc cagttcgatg gtcggcagag aagcacggat acgcgcgtcg
     5341 ctggttactt tcccgtcttt tactggtacg ttcagatccg cacggataaa tacacgtttc
     5401 ccagcaagat ccagatcggt catcttaatt acagacatgg tgaatcctct cgttgattct
     5461 aaaagttttg cagacgctgc ttgcgtctta cctgaaagca acagtagcca tagctaacgt
     5521 cgtgtcgagc attcggttag caaagcccca ttcgttatcg caccagacca acgttttgat
     5581 caggtgtgcg ccactgaccc gggtttgggt gccatcgaca atggcactgt gcggatcgtg
     5641 gttaaaatct acagagacca acggcaattc cgtatagtca actataccat gaaatgcacc
     5701 ttgtgctgct ttttgcagca acaggttgac ttcattggct tttacaggtt tcttcaccgt
     5761 cacgcttaaa tcgattgccg tcacatttat ggttggcaca cgtaccgcaa tcgcttcaaa
     5821 gcgatcgtta aattgcggaa aaaatcgtgt gataccggcg gccagtttag tatcgaccgg
     5881 aatgatcgac tggctggctg cccgggtgcg acgcaggtca ggatggtatg catcaataac
     5941 ctgttgatcg tgcatggcgg agtgaattgt ggtcacagtg ccggactcaa taccgtacgc
     6001 atcatctaac aatttgatga cgggaattat gcaattcgtg gtacaggaag cgttagaaac
     6061 gatgcggtgt tccgcacgaa gttgatcctg attgacgccg taaacaacgg tcgcgtcgag
     6121 atcgttactg ccaggatgtg aaaagagcac ttttttggcc ccggcggcaa tatgcgcttc
     6181 gccatgctcg cgggagccat atacgccggt gcagtcgagg actacatcaa cgccaagttc
     6241 acgccagggg agcgattgca gtgaacgttc atgcaatacg cggatggcgt catcaccaac
     6301 aaaaagttga tcgcgttcct gtcgtacttc ccatgcaaaa cggccatggc tggtgtcata
     6361 tttcaacaaa tgcgccatgc ccgcagcatc cgccagttcg ttgattgcca ccacggtaat
     6421 ttccgcccgg cgtccggatt catacaaagc acgaaccaca ttacgcccga tgcgaccgaa
     6481 gccatttatc gctacgcgta cggtcataga tctcctgcaa ggttttccct gagcaaattt
     6541 gccagacaga gtaatccagc aaatcgtccg gggaaacctt acctgtcgca aactgcgact
     6601 gattggttaa ttgtcgaaca tttaatcgac tgaaacgctt cagctaggat aagcgaaacg
     6661 tggaataaaa ggaatgattg tccagtcaaa gaaagcaatt atctgactta cgtcacgttt
     6721 tcagccccgc ccctgtggaa tttattccac tttgcagaat cacgaataag cgtagcaaaa
     6781 tcttttcgtt gtgccgtcac aaaccctgac ttatatcaga atatgactga tgcagcgtcg
     6841 atattatccg caatacgtcc gagtttcgga gtactccaat gatgacattg ccctacccat
     6901 attcttcctc cgcacgcttt tacgcactgc gcctcctccc cgggcaggaa gttttttccc
     6961 agctacacgc ttttgcacag cagcatcaac ttcatgccgc ctggattgca ggctgtaccg
     7021 gtagcctgac tgacgtcgcc ttgcgctatg ccaggcaaga aggcaccacg ctcctgaacg
     7081 gtacattcga agtgatctca ctaaacggca cgctggaaca gagtggtgag catcttcatc
     7141 tctgcgtttc cgatccacac ggcacgatgc ttggcggtca tatgatgccc ggctgtaccg
     7201 tgcggaccac gcttgaactg gtgatcggta gccttgagga actggcgttt agccgccaac
     7261 cttgcgcgct ttctggttac gacgagttgc atatttcccc cgttaaataa ctactttcaa
     7321 agaggttttc ttatggcgcg tagccacttt tccagtcagg cactggtgtt gatcgttata
     7381 tctatcgcca tcaatatgat cggcgggcaa ctggccagca tggtcaaatt acctatattt
     7441 ctcgactcca tcggcacact tattagcgcg gtactgcttg gtccggtgat cggaatgctg
     7501 accggcttac tgaccaattt actctgggga ttgctgaccg acccgatcgc cgccgcattt
     7561 gcacccgtcg cgatggtcat cggcctggtc gccggttggc tggcgcgagc gggttggttt
     7621 cgcaccctgc caaaagtcgt tgtcagcggc gtgattatta cgcttgcggt aacggtcgtc
     7681 gctgtaccgc tgcgtactgc gctgttcggc ggtgtcaccg gtagcggagc cgatttgttc
     7741 gttgcctgga tgcactcgat ggggcaaaac ctggtggagt cggtggcgat tacggtgata
     7801 ggcgcgaacc tggtcgataa aattcttaca gcggtgattg tctggctttt actgcgccag
     7861 ctgccgattc gcaccacgcg ccattttccg gcaatggctg ccgtgcgcta aatgcatcca
     7921 tttacctcat taacactgtg ggcattggcg gcctgcacca cgcttatcct gcccgcgcag
     7981 accattttgc cgatctatag cgcggcgacc tttttctgcc ttattgcgct aaaggccacg
     8041 cggcggcggg caaaatatgt cgtctggctg atgttctcgc tgggagccgg gctgtggctg
     8101 gtacacggtg gctggctacc agaatggcta agcggcacgc cacgctcgcc agaacggtgg
     8161 tcgcatgcta ttacgctctg gttgcggatt ctggcgattg tttcaacctc acagttgtgg
     8221 atgcagtacg tccccgtgca atgttttatt cgcgctctgt ttgcttctcg cctgccgcca
     8281 ggcgtcgctt atctgtttgc cgggccgtta ttggtcgttg agcagttaaa acggcaatta
     8341 gcgattattc atgaagcgca gcgtgcccgc ggcgtgccgc tggatgaggg ctggtatcag
     8401 cgtttacgtg cgatgcccgc gttaattatt ccgctaacac acaatgcgct taacgatctg
     8461 gctgtccgtg gtgcggcgct ggatatgcgg gcatttcgga tccacaaccg acgaacaacg
     8521 ttgtgggcac cagccgatag caccctacaa cgcgtagcgc gttacaccat gatcttgctg
     8581 atgctgacag aattcggagc gtggatatgg ttacgttaga acagttccgt tattgcccga
     8641 cacactcaac gcatcctccg ttctgttatg actttcacta tgtcaaaccg gggatggtcg
     8701 ccatctttgg tgacaacggc agtggcaaaa gtacgctggc acagctgatg gcgggctggt
     8761 atccggactt tctgccagga gagataacag gcacggggac gctcctcggt acgcccattg
     8821 ggcatctccc gcttaatgaa caatccgcca ccatccagct cgtccagcaa tcgccctatt
     8881 tgcagctctc cggctgtacc tttagcgtgg aagaagaagt tgcctttggg ccagaaaatc
     8941 tgtgtcttgc tgaagcagag attatggcgc ggattgatgc cgccctgact ctgaccgagt
     9001 gccagccgtt gcgccatcgt cacccggcaa cactctccgg tggagagaca cagcgcgtgg
     9061 tcatcgcctg cgccatcgcg atgcagccaa agctcttaat tcttgatgaa gcctttagcc
     9121 gcctgacgcc gcaggccagc gaaatgctgt tgcagcgctt acaacactgg gcgtttgaac
     9181 gtggttcgct gattattctt tttgaacgtc atcgcacacc tttcctgaac tactgccagc
     9241 aagcgtggca attgcaaaac ggagcgctcc agccactatg ttaacgttaa atcagatatc
     9301 ttatcgctgg cctggcgcgg caacggattg tctttgcgac atttctctgc aactcaaaca
     9361 aggtgaatgg ttggcgctga ccggtgacaa tggcgcaggg aaatcgacgc tgttacgagt
     9421 aatggcaggt cttcttacgc ccacagccgg tacggttatg ctgcaacaac aggcgatgaa
     9481 aaacctgaaa aaccgccagc gcgcggcaaa ggttggcgta ctgtttcagg aagcggaaaa
     9541 ccaacttttt cacagcaccg tcgctgacga gatcgcattt ggtttgaaac tgcaaaa
//
LOCUS       DAJVUN010000150         9506 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.150, whole genome shotgun sequence.
ACCESSION   DAJVUN010000150 DAJVUN010000000
VERSION     DAJVUN010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9506
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.150"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..162
                     /locus_tag="OQQ76_003141"
     CDS             <1..162
                     /locus_tag="OQQ76_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310915.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HCS1969541.1"
                     /translation="KKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANG
                     TSQTVKDNT"
     gene            371..667
                     /locus_tag="OQQ76_003142"
     CDS             371..667
                     /locus_tag="OQQ76_003142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001307279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HCS1969542.1"
                     /translation="MTYTDVRFLLTGGRKMARTMTVDLGDELREFIESLIESGDYRTQ
                     SEVIRESLRLLREKQAESRLQALRDMLAEGLSSGEAQPWEKDAFLRKVKAGIRK"
     gene            669..965
                     /locus_tag="OQQ76_003143"
     CDS             669..965
                     /locus_tag="OQQ76_003143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001220181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1969543.1"
                     /translation="MRIIKLMPKANEDLEGIWYYSYHHFGEPQADRYVEHLSDVLQIL
                     SNNNIGTPRPELGEGIFVLPFERHVIYFLQSPGEIIVIRILNQNQDATRHLHWS"
     gene            1069..2430
                     /gene="yegQ"
                     /locus_tag="OQQ76_003144"
     CDS             1069..2430
                     /gene="yegQ"
                     /locus_tag="OQQ76_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HCS1969544.1"
                     /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN
                     HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM
                     LVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDME
                     IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY
                     EPIPVQNVEPTLGIGAPTDKVFIIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE
                     RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY
                     TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM
                     TPQGNINFTLEHMENAKGEAMPIAPGDGYTVWLPVPQDLELNYALLMRNFSGESTRNP
                     HGK"
     gene            complement(2704..2922)
                     /gene="ogrK"
                     /locus_tag="OQQ76_003145"
     CDS             complement(2704..2922)
                     /gene="ogrK"
                     /locus_tag="OQQ76_003145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage transcriptional regulator OgrK"
                     /protein_id="HCS1969545.1"
                     /translation="MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYES
                     VQRYIVKPGEVHAVRPHPLPSGQQIMWM"
     gene            complement(3003..4166)
                     /locus_tag="OQQ76_003146"
     CDS             complement(3003..4166)
                     /locus_tag="OQQ76_003146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016157990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HCS1969546.1"
                     /translation="MLDALTFDAGSTLTPDYMLMLDSRDITGNISDRLMSMTLTDNRG
                     FEADQLDIELNDADGQVGLPVRGAVLTVYIGWKGFALVCKGKFTVDEVEHRGAPDVVT
                     IRARSADFRGTLNSRREGSWHDTTLGAIVEAIASRNRLEASVAPSLAGIKIPHIDQSQ
                     ESDAKFLTRLAERNGGEVSVKMGKLLFLKAGQGVTASGKKIPQVTITRSDGDRHHFAI
                     ADRGAYTGVTAKWLHTKDPKPQKQKVKLKRKKKEKHLRALEHPKAKPVTQKKTPKVPE
                     AREGEYMAGEADNVFALTTVYATKAQAMRAAQAKWDKLQRGVAEFSISLATGRADIYT
                     ETPVKVSGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEVRLSDVEYETEDDE"
     gene            complement(4166..4645)
                     /locus_tag="OQQ76_003147"
     CDS             complement(4166..4645)
                     /locus_tag="OQQ76_003147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000978924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1969547.1"
                     /translation="MMLALGMFVFMRQTLPHQTMQRESDYRWPSNPRIGKRDAFQFLG
                     VGEENMTLAGVLYPELTGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETG
                     SIFFADGTPRKIDFTLSLTRVDESLAALYGDIGKQAESLIGKAGSMATKFTGMTGAG"
     gene            complement(4660..7107)
                     /locus_tag="OQQ76_003148"
     CDS             complement(4660..7107)
                     /locus_tag="OQQ76_003148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016236410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1969548.1"
                     /translation="MSNNVKLQVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLRE
                     LNGQASRIEGFRKTSAQLAVTGHALEKARQEAEALATQFKNTERPTRAQAKVLESAKR
                     AAEDLQAKYNRLTDSVKRQQRELAAVGINTRNLAHDEQGLKNRISETTAQLNRQRDAL
                     ARVSAQQAKLNAVKQRYQAGKELAGNMASVGAAGVGIAAAGTMAGVKLLMPGYEFAQK
                     NSELQAVLGVVKDSAEMAALRKQARQLGDNTAASADDAAGAQIIIAKAGGDVDAIQAA
                     TPVTLNMALANRRTMEENAALLMGMKSAFQLSNDKVAHIGDVLSMTMNKTAADFDGMS
                     DALTYAAPVAKNAGVSIEETAAMVGALHDAKITGSMAGTGSRAVLSRLQAPTGKAWDA
                     LKELGVKTSDSKGNTRPVFTILKEMQASFEKNRLGTAQQAEYMKTIFGEEASSAAAVL
                     MTAASTGKLDKLTAAFKASDGKTAELVNIMQDNLGGDFKEFQSAYEAVGTDLFDQQEG
                     ALRKLTQTATKYVLKLDGWIQKNKSLASTIGIIVGGALAMIGVIGAIGLVAWPVITGI
                     NAIIAAAGAMGAIFTTVGSAVMTAIGAISWPVVAVVAAIVAGALLIRKYWEPVSAFFG
                     GVVEGLKAAFAPVGELFTPLKPVFDWLGEKLQAAWQWFKNLIAPVKATQDTLNRCRDT
                     GVMFGQALADALMLPLNAFNKLRSGIDWVLEKLGVINKESDTLDQTAARTNAATYGTG
                     GYIPATSSYAGYQAYQPVTAPAGRSYVDQSKNEYHISLTGGTAPGTQPDRQLQDALEK
                     YERDKRARARASMMHDG"
     gene            complement(7100..7219)
                     /locus_tag="OQQ76_003149"
     CDS             complement(7100..7219)
                     /locus_tag="OQQ76_003149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001496926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HCS1969549.1"
                     /translation="MADVAVIFHWPPSELYPMSLTELITWREKALRRSGNTNE"
     gene            complement(7252..7527)
                     /locus_tag="OQQ76_003150"
     CDS             complement(7252..7527)
                     /locus_tag="OQQ76_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001719230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HCS1969550.1"
                     /translation="MNKENVITLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANS
                     EVDALIKVLPRMTAPMLTEQEVAALELPDLVALAGKVVGFLSPNSVQ"
     gene            complement(7585..8103)
                     /locus_tag="OQQ76_003151"
     CDS             complement(7585..8103)
                     /locus_tag="OQQ76_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HCS1969551.1"
                     /translation="MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMN
                     GSAPVDLGLDDDALSMEWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVA
                     VEVVMRGRQKEIDTGEGKQGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGV
                     DRLEQHRRNIGL"
     gene            complement(8116..9306)
                     /locus_tag="OQQ76_003152"
     CDS             complement(8116..9306)
                     /locus_tag="OQQ76_003152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001483446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HCS1969552.1"
                     /translation="MSDYHHGVQVLEINDGTRVISTVSTAIVGMVCTASDADAETFPL
                     NKPVLITNVQSAIAKAGKKGTLAASLQAIADQSKPVTVVVRVEDGTGDDEETKLAQTV
                     SNIIGTTDENGQYTGLKALLAAESVTGVKPRILGVPGLDTKEVAVALASVCQKLRAFG
                     YISAWGCKTISEVKAYRQNFSQRELMVIWPDFLAWDTVTSTTATAYATARALGLRAKI
                     DQEQGWHKTLSNVGVNGVTGISASVFWDLQESGTDADLLNESGVTTLIRRDGFRFWGN
                     RTCSDDPLFLFENYTRTAQVLADTMAEAHMWAVDKPITATLIRDIVDGINAKFRELKT
                     NGYIVDATCWFSEESNDAETLKAGKLYIDYDYTPVPPLENLTLRQRITDKYLANLVTS
                     VNSN"
BASE COUNT         2089 a         2670 c         2413 g         2334 t
ORIGIN      
        1 aaaaaaacgg caagtaacgg caaattctat ttcaatctga aagccgctaa tcatcaaatt
       61 atcggctcca gccagatgta cgccaccgcg caatctcgtg aaaccggaat tgcctccgtt
      121 aaagccaatg gcacaagcca gacggtgaaa gacaatacgt aattacgatg ccgggcgtgg
      181 gttgttggcg tccggcttta tatccaaata acgcttagtt attaataatt aagagtaacc
      241 gccgccatta aaatagtggg cactgacgag cactcgttgt gctttctttg tttaccatcc
      301 catacttatc ctcctgaaca tgttcatgtg ccaaaatatc ttctaatact ttcgtgacgc
      361 tatccggttt atgacataca ctgatgtaag atttttactt acaggcgggc gtaaaatggc
      421 cagaacgatg acggttgatc tcggcgatga gttgcgtgaa tttatcgagt ccttaattga
      481 atccggcgac tatcgcaccc aaagcgaagt gatccgtgag tcactgcgat tacttcgaga
      541 aaagcaagca gagtctcgcc tgcaagcgtt acgtgacatg ctcgcagaag ggttgagtag
      601 tggtgaagct cagccgtggg aaaaggacgc gttcttacgg aaggtgaaag cagggataag
      661 gaaataatgt gcgtattatt aaactcatgc caaaagccaa tgaggattta gaaggcatct
      721 ggtattacag ctatcaccat ttcggcgaac cacaagccga cagatatgtg gaacatcttt
      781 cagacgttct ccagattctg agtaacaata atataggtac gcccagacct gaattaggcg
      841 aaggtatttt tgttcttcct tttgaacgcc acgtcattta tttcctgcaa tcaccagggg
      901 aaattatcgt cattcgtatc cttaaccaaa accaggacgc caccagacat ttacactgga
      961 gctaaacccg ccgattgcgc tacaatgccc gccacttaaa gtgggggcac tcccctaacc
     1021 gcttcatcag gtgaagcgga tctgacctgt catcagaacg agagaattat gtttaaaccg
     1081 gaactccttt ccccggcggg aacgctgaaa aatatgcgtt acgctttcgc ttatggcgca
     1141 gatgctgttt atgcgggcca gccgcgttat tccctgcgtg tgcgcaacaa cgaattcaac
     1201 cacgaaaatc ttcagctcgg catcaatgaa gcccacgcgc tggggaaaaa gttttatgtc
     1261 gtggtcaaca ttgcaccgca caacgccaag ctgaaaacct ttatccgtga cctgaaaccg
     1321 gtggtggaaa tggggccgga tgcgctgatt atgtccgatc cagggctgat tatgctggtg
     1381 cgtgagcact tccctgaaat gccgatccac ctttcggtgc aggctaacgc cgtgaactgg
     1441 gcgacggtga aattctggca gcaaatgggc ctgacccgcg tgatcctctc tcgcgagctg
     1501 tcgctggaag agattgaaga gatccgcaat caggtgccgg atatggagat cgagatcttc
     1561 gttcacggcg cgctgtgcat ggcctactcc ggtcgctgcc tgctctctgg ctatatcaac
     1621 aagcgcgacc cgaaccaggg cacctgcacc aacgcctgcc gctgggagta caacgtccag
     1681 gaagggaaag aagatgatgt tggcaacatc gtacacaagt acgagccgat tccggtgcaa
     1741 aatgttgagc cgacgctggg tatcggcgca ccaaccgaca aagtgtttat aatcgaagag
     1801 gcccagcgtc cgggcgagta tatgaccgcg tttgaagatg agcacggcac ttacatcatg
     1861 aactcgaaag atctgcgcgc catcgcccat gtagaacgcc tgaccaaaat gggcgtgcat
     1921 tcgctgaaaa tcgaaggtcg taccaaatct ttctactatt gtgcacgcac cgcacaggtt
     1981 taccgcaaag ctatcgatga cgccgctgcg ggaaaaccgt tcgataccag cctgctggaa
     2041 actctggaag gtctggcgca tcgtggctat accgaaggtt tcctgcgtcg tcatactcac
     2101 gacgattatc agaactacga atacggttat tcagtttctg accgccagca gtttgttggt
     2161 gagtttaccg gtgagcgcaa gggggacctc gcggcggtag cggtgaaaaa taaattctcc
     2221 gttggcgaca gccttgagct gatgacgccg caaggcaaca ttaattttac ccttgagcac
     2281 atggaaaacg ccaaaggcga agctatgccg atagcaccag gcgatggtta tactgtgtgg
     2341 ctcccggtcc cgcaggatct tgagctcaat tacgcgctgc tgatgcgtaa tttctccggg
     2401 gaaagcacgc gtaatcccca cggtaagtga ttaatttcga ttatttttcc cggatggaaa
     2461 attcttagaa accgatcaca tacagctgca tttattaagg ttatcatccg tttcgctgaa
     2521 aaacataacc cataaaatgc tagctgtacc aggaaccacc tccttagcct gtgtaatctc
     2581 ccttacacgg gcttattttt tacgtacaac aaattgaaat aaaaggattt atttctggtc
     2641 acgtccacac attgaccaca tcgacaaaaa aagcccctcg actgaggggc ttcctgtttc
     2701 taattacatc cacataattt gctgccctga cggcaacggg tgcggcctta ctgcgtggac
     2761 ttctcccggc ttcacgatgt atctctgtac cgactcataa gtgatgaacg tggcgctgca
     2821 attcacgttc tggcactggt gataacgctc ttttgtcgtg tcagtgatat agcgacttgt
     2881 acgcgcatgt gcggcatgct ggcataaagg acaatgaaac atcgcgagca cctcttccgg
     2941 ttttgttgat ggtgccattt tagttaattt acccttataa aacaaacaga taaaacaaaa
     3001 catcactcat catcttctgt ttcgtactcc acatcagaaa gcctgacctc aagctctaag
     3061 gacgtcgtga agccgctatt attcagaaaa tgtgtcacct tagtgattgt ccagtcctgc
     3121 tcgtctatga cgcgcttaaa gcctgatact ttgaccggcg tttccgtgta aatatctgcc
     3181 cgaccagtag ccagactgat ggaaaactcc gcaacgcccc gttgcagctt atcccacttc
     3241 gcctgagcgg cgcgcatggc ctgcgctttc gtggcatata ccgtggtcag ggcaaaaacg
     3301 ttgtcagcct cacctgccat gtattcacct tcgcgcgctt ccggtacttt tggcgttttc
     3361 ttctgcgtga ccggtttcgc tttcgggtgc tccagtgcgc gcaggtgttt ctctttcttt
     3421 ttgcgtttca gttttacctt ctgcttttgt ggcttcgggt ctttggtgtg taaccacttt
     3481 gctgttacgc cggtataggc tccacggtca gcaatcgcaa aatgatggcg gtcgccgtcg
     3541 ctgcgggtta tggtgacctg cgggattttt ttaccactgg ccgtcacccc ctgccccgct
     3601 ttgagaaaca acagttttcc catttttacc gagacctcac cgccgttgcg ttctgcaaga
     3661 cgggtcagga atttcgcatc agactcctgc gactggtcga tgtgcgggat tttaattccg
     3721 gccagtgacg gagcgacact ggcttccagc ctgttacggg aggctatcgc ctcaacaatc
     3781 gcaccgagcg tggtgtcatg ccaggagcct tcacggcggg aattgagcgt cccgcggaaa
     3841 tctgcactcc gggcgcggat ggtgaccaca tccggcgcgc cccggtgttc aacctcatca
     3901 acggtgaatt tccctttgca taccagggca aaacctttcc agccgatata caccgtcagg
     3961 acagcgccac gaaccggcag cccgacctgc ccgtcggcat cgttcagttc aatatcaagc
     4021 tggtcagcct caaagccccg gttatccgtc agggtcatgc tcatcagacg gtcgctgata
     4081 ttgccggtaa tatccctgct gtcgagcatc agcatgtaat ccggcgtcag cgtactacct
     4141 gcatcaaatg tcagcgcgtc cagcattatc ccgcccccgt catacccgtg aatttagtcg
     4201 ccatactgcc agccttaccg atgagcgatt ccgcctgttt accgatatcg ccataaagcg
     4261 cggccagtga ttcatccacg cgggtgagcg acaacgtaaa atcaattttc cggggtgtgc
     4321 cgtctgcaaa gaaaatactc cctgtttcac tcaccctgct gatgacatac atgccgtaaa
     4381 tcatgccggt gccatccagc aacggccacg cccggccttc ctctgccatc agcctgagcg
     4441 tggtcatcgt cagcttcccg ccggtcagtt cgggataaag cacgccggca agcgtcatgt
     4501 tttcctcacc cacaccgaga aactgaaagg catcccgttt accgatacgg ggatttgacg
     4561 gccagcgata atctgattcg cgctgcatgg tctggtgtgg cagcgtctgg cgcataaaaa
     4621 caaacatacc taacgcgagc atcatttttc gtcacctcct taaccgtcat gcatcatgct
     4681 ggcacgggcg cgcgcacgtt tatcccgctc gtatttttcg agcgcatcct gtaactggcg
     4741 gtcaggctgt gtccccggcg cagtaccacc cgtcaggctg atgtgatatt cgtttttact
     4801 ctggtccaca taagagcggc cagccggtgc cgtaaccggc tgataagcct gatagcctgc
     4861 ataagagctg gtcgccggaa tataaccacc ggtgccatac gtggcggcat tagtccttgc
     4921 ggcggtctgg tcaagtgtgt ctgactcttt gttaataaca ccgagttttt ccagtaccca
     4981 gtcaatacca ctgcgcagtt tgttgaacgc attaagcggc agcatcaacg cgtcagccag
     5041 tgcctgcccg aacatgacgc ccgtgtcacg gcaacggttc agggtgtcct gtgtggcttt
     5101 aaccggggca atcaggtttt taaaccactg ccacgcggcc tgtaactttt cgcccagcca
     5161 gtcaaacacc ggcttaagtg gcgtgaacag ttcccccacc ggcgcaaatg ccgctttcag
     5221 cccttccacc acaccgccaa agaatgcgct gacaggctcc cagtatttac ggataagcaa
     5281 cgccccggcg acaatggcgg ccaccacggc cacaaccggc cagctaatcg ctccaatggc
     5341 ggtcataaca gcactgccaa ccgtcgtgaa gattgccccc attgcgcctg ctgccgcgat
     5401 gatggcattg atgccggtga taaccggcca ggctacgagg ccaatggcac cgatgacacc
     5461 aatcattgcc agtgcaccac cgacaatgat gccgatggtt gacgccagtg atttgttttt
     5521 ctggatccag ccgtcgagtt ttaacacata ctttgtggcc gtctgcgtga gcttacgcag
     5581 tgcgccttcc tgctggtcaa acaggtcagt ccccaccgcc tcataagcgg actgaaactc
     5641 cttaaagtca ccgccgaggt tgtcctgcat gatatttacc agctctgcgg tctttccgtc
     5701 tgaggcttta aacgcagcgg tcagtttgtc cagctttccg gttgaggcgg cagtcatcag
     5761 cacggcggcg gctgaactgg cctcctcccc gaaaatggtt ttcatgtatt cagcctgctg
     5821 ggcagtaccg agccggtttt tctcaaaact ggcctgcatt tctttcagaa tggtaaatac
     5881 tggtcgggtg tttcccttac tgtctgaggt tttcacacca agctctttga gtgcatccca
     5941 tgcttttccc gtcggtgcct gcaggcggct taacacggca cggcttcccg ttcccgccat
     6001 tgagcctgtg atttttgcat catgcagcgc cccgaccatt gcggcggttt cttcaatgct
     6061 gacaccggca ttttttgcca caggtgcggc ataggtcagc gcatcgctca tgccgtcaaa
     6121 atcggcggcg gttttgttca tcgtcatgga gagaacatcc ccgatatgag cgaccttatc
     6181 gtttgaaagc tgaaaggcgg atttcatccc catcagcagg gcggcgtttt cttccatcgt
     6241 gcgacggttc gccagcgcca tattcagcgt gaccggcgtt gccgcctgaa tggcatcaac
     6301 atccccaccg gctttcgcaa taataatctg cgcaccagct gcatcatctg ccgaggctgc
     6361 ggtattgtcg ccgagctgac gcgcctgctt gcgtagtgca gccatttcgg cggagtcttt
     6421 taccactccg agcacggcct gcaattctga gtttttctgc gcaaactcat aaccgggcat
     6481 cagcagctta actccggcca tcgttcccgc cgccgcaatc cccacaccgg cagcgcccac
     6541 cgaggccata tttccggcca gttcctttcc ggcctgataa cgctgtttta ctgcgttaag
     6601 ttttgcctgt tgtgcactga cacgcgccag cgcgtcgcgc tgacggttaa gctgtgcggt
     6661 ggtttcactg atacggtttt tcagtccctg ctcatcatgt gcaagattgc gggtattaat
     6721 tcccacagcg gccagttccc gctgctggcg tttaacggaa tctgtcaggc ggttatattt
     6781 cgcctgtaag tcctccgccg cacgctttgc ggattccagc actttcgcct gagcacgggt
     6841 cggacgttcg gtgtttttaa actgtgtggc aagggcttcg gcctcctgcc gtgccttttc
     6901 aagtgcatga ccagtcacgg cgagctgtgc actggtcttg cggaatccct caatacggga
     6961 tgcctgaccg ttcagctcgc gcagtgattt ttgtgtttcc cggatatccc ccgacagcga
     7021 tttgctcgct gtgcggatgg atttaaacgg gcgggatgcc tggtcaacag ccctgagcaa
     7081 tacctgtaat tttacattgt tactcattcg tgtttccgct tcgccggagc gccttttcgc
     7141 gccatgtgat gagttcggtc aggctcatgg gatacagttc tgatggcggc cagtgaaata
     7201 tcactgccac atccgccatc aggtcatcga ccgagagatt tttcggaaac gtcactgcac
     7261 cgagttcggc gacaaaaaac cgaccacctt accggccagc gccacaaggt caggcagttc
     7321 cagcgcggcg acttcctgct cggtcagcat cggtgccgtc atgcgcggca gcaccttaat
     7381 cagtgcatcg acttcagagt tcgcgaccgc agccagactg acaccgcgca gcgtcccggc
     7441 actgggtttc atcagcgtga cctgttcgat gacctgctca ccacgcttga ccggattgtc
     7501 cagggtaatc acattttctt tgttcatggt tttctcactt ctgaatcggg ggttaaccgg
     7561 tcagcctggc tgaccggatg aaaatcacag gccgatattg cggcggtgtt gctccagccg
     7621 gtcgacgccg ttcaccttct caatcatgtt gatggtgtcg atttcgacca gctccttacc
     7681 gtccatcgtc agccggaaat aggtgcagac cacggagatt ttcgactcgg tgtcttctcc
     7741 ctgtttaccc tcgccggtgt cgatttcttt ctgacgtcca cgcatgacca cctcgacggc
     7801 caccgtttcg ccggtatcgt cgcgctggta agagcctgca aaacgaatcg gcacggcatc
     7861 cacaccggtt gcggcgtaaa gctcccagat aaccgaatcc gggaagcccc cgagcgacca
     7921 ctccattgac agcgcatcgt catcaaggcc gaggtctacc ggtgcgctgc cgttcatccc
     7981 cgcacctcga tagttttcga gcttacgggt cagttttggc agcgtgacgg actttgcaac
     8041 gccctgatag ctgtagccgt tcagaaagac gttcattaac ttgagtttgc gcggcattgc
     8101 catcggtcag gctccttaat tgctgttaac cgaggtgacc agatttgcca ggtatttatc
     8161 ggtgatacgc tggcgcaggg tcaggttttc aagaggaggc accggggtat agtcgtagtc
     8221 gatatacagt tttccggcct tgagggtttc cgcatcgttg gattcttcgc taaaccagca
     8281 ggtcgcatcc acgatatagc cgtttgtttt cagctcacgg aatttggcat tgatgccgtc
     8341 aacgatgtca cgaatcagcg ttgcggtgat gggcttgtcc accgcccaca tgtgcgcctc
     8401 agccatcgtg tcggccagta cctgtgcggt gcgggtgtag ttttcaaaga ggaacagcgg
     8461 gtcatcagag caggtacggt taccccagaa gcggaaaccg tcacggcgaa tcagtgttgt
     8521 gacgcctgac tcgttaagca ggtcagcatc ggtgccggac tcctgcaaat cccagaatac
     8581 agatgcgctg atgccggtaa caccgttcac cccgacgttg gacagcgttt tatgccagcc
     8641 ctgctcctgg tcgattttgg cacgcagacc cagcgcacgg gcggtagcat acgcggtggc
     8701 ggtggtactg gtgaccgtat cccatgcgag gaaatccggc cagatgacca tcagctcacg
     8761 ctggctgaaa ttctggcggt aagctttcac ctcggaaatg gttttacagc cccatgcgct
     8821 gatatacccg aaagcgcgca acttctgaca gactgatgcc agtgcaacag ccacctcttt
     8881 ggtatccagt cccggtacgc cgagaatacg cggtttaaca ccggttaccg actccgccgc
     8941 cagcagggct ttcagtccgg tgtactgacc gttttcgtcg gtggtgccga tgatattgga
     9001 aacggtctgc gcgagtttcg tttcttcgtc gtcgccggtg ccgtcttcca cgcgcacaac
     9061 aacggtgacc ggttttgact ggtcagcgat ggcctgcaac gatgccgcca gcgtgccttt
     9121 tttaccggcc tttgcaattg cgctctgcac attggtaatc agcaccggtt tattgagggg
     9181 gaaggtttcc gcatccgcat cgctggccgt gcagaccatg ccgacaatgg cggtggatac
     9241 ggttgaaatg acgcgggtgc cgtcgttaat ctccagcacc tgcacgccgt gatgatagtc
     9301 actcatccgt ttaactccgt ggttaatggg tgcaactatt ttctgttgta cagagcatga
     9361 gacgctattt gatctgtctg gtcagtggat gaaacaacag atacagaaaa ggcgggcaat
     9421 tcgcccgcct gtcctagttt gtactcactc attttccgac tgacaattta catagccaaa
     9481 acgctatcaa atctgacagt ctgctt
//
LOCUS       DAJVUN010000151         9430 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.151, whole genome shotgun sequence.
ACCESSION   DAJVUN010000151 DAJVUN010000000
VERSION     DAJVUN010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9430
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.151"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..374
                     /gene="kgtP"
                     /locus_tag="OQQ76_003153"
     CDS             <1..374
                     /gene="kgtP"
                     /locus_tag="OQQ76_003153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HCS1969553.1"
                     /translation="TSMLCFGSLAAIFTVPILSALQNVSSPYAAFGLVMCALLIVSFY
                     TSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSIGMETAFFWYVTL
                     MAVVAFLVSLMLHRKGKGMRL"
     gene            complement(371..694)
                     /locus_tag="OQQ76_003154"
     CDS             complement(371..694)
                     /locus_tag="OQQ76_003154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417081.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiM family lipoprotein"
                     /protein_id="HCS1969554.1"
                     /translation="MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNE
                     YSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVW
                     QLTRH"
     gene            complement(740..2095)
                     /gene="pssA"
                     /locus_tag="OQQ76_003155"
     CDS             complement(740..2095)
                     /gene="pssA"
                     /locus_tag="OQQ76_003155"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HCS1969555.1"
                     /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI
                     ASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAAS
                     NTNADWYCRMAQENSGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDIYL
                     HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF
                     RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL
                     PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRLFLSR
                     LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD
                     PQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI
                     L"
     gene            complement(2209..4869)
                     /gene="pat"
                     /locus_tag="OQQ76_003156"
     CDS             complement(2209..4869)
                     /gene="pat"
                     /locus_tag="OQQ76_003156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysine acetyltransferase"
                     /protein_id="HCS1969556.1"
                     /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV
                     LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA
                     PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS
                     NTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV
                     SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA
                     VETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHV
                     AISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPTTESAQVLIEAVKH
                     HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR
                     ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE
                     AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQA
                     RIHGLLVQSMANRAGAQELRVVVGHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN
                     LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG
                     SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ
                     QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR
                     AISDPDNIDVEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVA
                     LARKLGFNVDIQLEEGIVGLTLNLAQREES"
     gene            complement(4901..5599)
                     /gene="tapT"
                     /locus_tag="OQQ76_003157"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
     CDS             complement(4901..5599)
                     /gene="tapT"
                     /locus_tag="OQQ76_003157"
                     /gene_synonym="tuaA"
                     /gene_synonym="yfiP"
                     /EC_number="2.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311476.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-uridine aminocarboxypropyltransferase"
                     /protein_id="HCS1969557.1"
                     /translation="MTENAVLQLRTERIARATRPFLARGNRVRRCQRCLLPEKLCLCS
                     TITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNP
                     DYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS
                     VDLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKT
                     QHLGSITAEQLESV"
     gene            complement(5668..6087)
                     /gene="trxC"
                     /locus_tag="OQQ76_003158"
     CDS             complement(5668..6087)
                     /gene="trxC"
                     /locus_tag="OQQ76_003158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HCS1969558.1"
                     /translation="MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET
                     LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF
                     GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL"
     gene            6294..7331
                     /locus_tag="OQQ76_003159"
     CDS             6294..7331
                     /locus_tag="OQQ76_003159"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HCS1969559.1"
                     /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRA
                     DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR
                     QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA
                     ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC
                     AHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTS
                     SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV
                     LLGEWWRQNKA"
     gene            complement(7379..8068)
                     /gene="ung"
                     /locus_tag="OQQ76_003160"
     CDS             complement(7379..8068)
                     /gene="ung"
                     /locus_tag="OQQ76_003160"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HCS1969560.1"
                     /translation="MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDV
                     FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPG
                     FTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV
                     FLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPI
                     DWMPVLPAESE"
     gene            8373..8756
                     /gene="grcA"
                     /locus_tag="OQQ76_003161"
     CDS             8373..8756
                     /gene="grcA"
                     /locus_tag="OQQ76_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007728348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HCS1969561.1"
                     /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVV
                     AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVIARTFTESL"
     gene            complement(8812..9399)
                     /gene="eamB"
                     /locus_tag="OQQ76_003162"
     CDS             complement(8812..9399)
                     /gene="eamB"
                     /locus_tag="OQQ76_003162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/O-acetylserine transporter"
                     /protein_id="HCS1969562.1"
                     /translation="MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLA
                     GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA
                     KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW
                     ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY"
BASE COUNT         2352 a         2420 c         2446 g         2212 t
ORIGIN      
        1 gtacctcaat gttatgtttc ggttcgctgg cagccatttt taccgttcct attctctcag
       61 cattgcaaaa cgtttcctcg ccttatgccg cttttggtct ggtgatgtgt gccctgctga
      121 tagtgagttt ttatacatca atcagtggaa tactgaaggc tgagatgttc ccggcacagg
      181 ttcgcgcatt aggcgttggt ctgtcatatg cggtcgctaa tgctatattt ggtggttcgg
      241 cggagtacgt agcgttgtcg ctgaaatcaa taggaatgga aacagccttc ttctggtatg
      301 tgaccttgat ggccgtggtg gcgtttctgg tttctttgat gctacatcgc aaagggaagg
      361 ggatgcgtct ttagtgacgg gtcagttgcc agacggtata gccggtgctt gcaccggcga
      421 catcccaggc caaatccttc cagctccagc cgctcccttc ggggcggcta tcccaaagct
      481 cttttgacgc ccccaaactg acagagaaca tcaatccaaa catggcactg cgatcccggc
      541 tcatcccctg atgctgtgaa tattcatttc cggcggcgga aagcatcgcc gaggcgataa
      601 agtgttgagc tttatcctgc ccgctccagc tatcgttagc catatggctg catccagaaa
      661 gtaacaatag cgaacagaca aaaagaatac gcaaaacgtg gcctccaaaa aacaaacccc
      721 gtacaggacg gggttgtgat tacaggatgc ggctaattaa tcggtcgatg cggatacggc
      781 gcaaacggcg gatgagttta cgaaccttca ccggataatc ggcaatactt tgcagatcgc
      841 gatagtgctt aacgatggtg gtatgctcgc ggatcagctc cagttctttc tctcgctgcg
      901 gcgcaagctc cagttgtgga tcgtggatca aaatggcgtt ttccagatcc agacgccagg
      961 cgcgcgggtt caggttatta ccggtgatca acatccactt atcatcaacc cacatccctt
     1021 tcaggtgata ggtgttgtcg tcatctttcc ataaccgaac cactagctgg tcagtattga
     1081 cgtaatactg caaacggctc aggaaaagac gcagattgat ctcatagaga taaggcaatg
     1141 cgccaattat cttgaaaggt tcatcttccg gaatgtagaa gtcgttcgcg gttttatcac
     1201 caacaataat ttcgaccttt ttcccttcgc gcagcaactg gataatattg cgcacaagga
     1261 ttgctggcag gttgaagtat ggcgtacaga tggttagttt ctgctcggca caaggcataa
     1321 gatggaaaat ggtcttgttc aacagactcg atttccccag ccccactagc ggcgttacgg
     1381 aaagctgatc gttgtcggca tcgccctgga aatgataagc ggcatcacgc agctcctggc
     1441 ggaacagacg aatatcgttc ttgatttccg ggctttttgg ccgattaaca tcatccagac
     1501 gattaacgcc gcggccattc ataatattct gtgtaaccca ttcaaacata atgtctgaca
     1561 tcttacggtt acggataaga tgataacggt cgtagcgata tttatcgtgc tgatgcaggt
     1621 aaatatcgtt caggctggca ccgctataaa gtacgctatc gtcgatgata aagcctttaa
     1681 agtgcagaac accaagggct tcacgggtat tgattggaac gccataaacc ggaacatcta
     1741 cgcccgaatt ttcctgcgcc atgcggcagt accagtcagc gttagtgtta gatgccgcag
     1801 cgccaatgcg tccacgttgt gcacgatgcc agtcgaccag cacccgcaca tccagttccg
     1861 gacgctgcct tttagcttca tacaacgcgt tcagaatgcc tttgccaccg tcatcctgtt
     1921 cgagatacag ggcgacaatg caaatgcgct gcttcgcgct ggctattttt tccagcagcg
     1981 tctcccggaa gtcggcggga gcgtaaaaga aatcgacatc atcaactgat tgagaaatct
     2041 tgggtagttg ggcaaggtgt tgttgatgtt tattacgctt aaattttgac aacatcacag
     2101 tgcatttctt ctctgttcat tgaagggtcc tctgtgcaat gcagacgaca taagcgggca
     2161 ataataacac cagtcccgat taagtggtca acatttccag taccttactc atgattcctc
     2221 gcgttgggca agatttagcg taagcccaac gatcccctct tcgagctgga tatcaacgtt
     2281 aaacccgagc ttgcgggcta gcgccaccat gccacgattg tttggcatcg taataccatt
     2341 cagacgttgt agtccgtgat ctcgcgtata ggtaatcaac ttttccatta agcgtcgacc
     2401 taagcctaac cctttgagat ccgagcgaac cagcacagca aattcgacat cgatgttatc
     2461 aggatcggaa atcgcacgcg tgacgccgag gatctcttcc gtttgatcaa tacgtcgtac
     2521 cgctacaaac gccatttccc gatcgtagtc gatctgtgtc atgttggcta aatcttcatg
     2581 ggtaaattcg ttgatctcgc taaagtagcg gtaataaaga tcttctttgg tgactcgcga
     2641 aatgaattgc tgaagttgtg gctcatcttc tggcaaaatc gggcggaaca agcagcgttc
     2701 accgtttttc aattctaccc attcttccag ctgatgcgga taagggcgca ctgccagccg
     2761 actctcgtta tcgccttcaa acggcgagat atccagcgtg acatccagcg cggtaaattc
     2821 actgccagaa gccagcaaag gatgaatatc cagacgctga atttccgggc aatcgacaat
     2881 caagttggaa acctgcacca gaagctggct caagcctgca acatccaatg ggcgtagcgc
     2941 actgcgcgca cgaatctttt tacttttgat cccctgaata accagatagc gggccaggtt
     3001 catgttcagc ggcggcagtg cgacgacggc ttgatcttca ggacgccact ccacaccgcc
     3061 ttcacccagc atgatcaacg gcccgaaaac cggatcgtgc ccaaccacaa cccgcaactc
     3121 ctgagcgcca gcacggttag ccatactttg caccaacagg ccgtggatcc gcgcctgcgg
     3181 ccaggccatt tttacgcgat cgaaaatggc gtttgccgct tgctggactt cattggctgt
     3241 acgcaagtac agcatgacgc cctgaacttc cgatttatgt ggaatatccg gcgaacgcaa
     3301 tttcagcgcc accggataac caatctgttc ggcaatatgc accgcttcgg tgctatcgct
     3361 ggcaatccag gtagggagcg tgttcatgcc atacgcttgc aggatgggct gaacttcatg
     3421 ggtatcgagc gacgtagccc cttcggcaat cgcctgttgc aacagaagat gcgcttctgc
     3481 ggtattggaa gtcagattgc tgggcaacgc cggcgtttcg cgtagttgct tctgattacg
     3541 ccggtactcc accatatgca taaaagcagt gatggttcct tccggggtac ggtaggtcgg
     3601 cagcccggct tcgctgaata aacgtcgtgc ctcttgcgag gagtgctcgc cgcaccagtt
     3661 cgtcagcaaa gagacatatt tgctgcgggg atgatgcttt accgcttcaa ttaatacttg
     3721 cgcgctttct gttgtgggag cagcggcgct gggcgaatga ataaccatca gcgcgtcaaa
     3781 atcctggctg tggagcagaa tatccagcgt tttaatatag tgctcactgc tggcgtcatc
     3841 gcgtagatcg agcgggttag atattgccac atgttctggc agtgcatcgc gcagtttctg
     3901 gcaggtttct tcgcttagcg ttgccagctt gccattgcgt gaccataagg catccagcgc
     3961 cagcgcggca ggcgcagcac cgttgctgat aatcatcagc cggtcgccac gtagcgggcg
     4021 catatggcta agggtttcca ccgccgaaaa cagctcgtgg gtgtcctgta cccgcaacaa
     4081 accggcacgc tgaatagccg catcccatgc cgggtccatt cctgccgtgg tgttgagcag
     4141 tcgctgtgcc gccgggctac gtccgctttt aatcaccaga atcggtttat tacgcgaggc
     4201 actacgggcc gccgaaacaa agcgtcgcgc gtcgcttaac tgttcgagat agagcaggat
     4261 ggcgctggtt ttactgtcgc gtgccagata gtcaagcaat tcatcaacgt cgatatccag
     4321 gctgtcgccg agcgcaataa agtaggaaaa gcccatctta cgctgttgcg cccagtcgag
     4381 gatggtgttg gagacggcag ccgattgcga aataaacgcc agcttgccgc gtttaatcgg
     4441 cacaggcgaa aagctggcat tcagaccttg ccagggagcc agtaaaccca gactgtttgg
     4501 tccaagcagg cgcatgttat ggcgcagggc gcaggcgcgg agatcttcgt gttgcgatgc
     4561 cggggcggaa agaataatgc aggttttaca gcctttctcg ccgagctctt ccagaagagc
     4621 aagattacgg ctggcattgg tacataaaac cgcaaggtcg ggtgtaaagg gcaagctggc
     4681 aatatccggc caggccaaca cacccaacac cgctttccag gctggcgtca ccgggagtac
     4741 cggtccgtta aagcctcccg ccagcaggtt acgcatcatc aggtaacctg cgcgattggg
     4801 tttcatcgac gcgccaatta ccgctatcga ttttggtcgc agtagtgctt ccagtcctcg
     4861 ctgactcata ccggtctccc gcagaagtga ccgaatgatt ttaaacgctt tctaactgtt
     4921 ctgctgtgat gctacccaga tgttgcgttt ttcctgccag atagcgtgtt ttaaagcggg
     4981 taaaatgctc gcctaaccct gctgccgccc cggtatcgcc ggccatatct aacagtgcga
     5041 tggctacctc ggcagtacaa tattggcctt cagcctgggc ttcacgcagg cgataggcag
     5101 aaagccggga aagatcgacg gaaatgacgg gaagattatc cagatacgga cttttacgaa
     5161 acatcttgcg agcttccggc caggtaccat cgagcatgat aaacagcggt ggcttaccgg
     5221 caggtggtgt gaagatcact tcccgttgct catcagcata cgaggcggga aagaccacca
     5281 ttggctgata atccgggttt tgtaccagat ccagcaaatc ctgcgagggt tcggtacgcg
     5341 accattgaaa cgcaacggta tcaggcaaaa tatcagcaat cagacgcccg gtattactgg
     5401 gcttcattgg ctcggtgtcg aacatcagca aacagaagcg actttttgct tgtgctgggg
     5461 taattgtcga acagagacat aatttctctg gcaaaagaca gcgttggcag cgacgaacgc
     5521 gattaccgcg ggcaagaaaa ggacgtgttg cgcgcgcaat acgctcggtg cgtaactgga
     5581 gaacagcgtt ttcggtcata agagagcgtc gaaaaaacgc cattgtcgca gaggagaaaa
     5641 cggggcacaa gatgcgcccc ggtaagatta aagagattcg ttcagccagc tatcgaacgg
     5701 agctttcggt actgcgccat taagcatgtc gacaacctga ccgtttttga aaatcatgat
     5761 cgtcggtata ctacgaattc caaagcgact gctcaattca cgttcagctt cggtattcac
     5821 tttcacaaag cgcactttac cgctacgctc ttgcgcgaca tcttcaaaaa ttggtgcgaa
     5881 attacggcag gggccgcacc acggtgccca gaagtcgatc accacaggta gatcatcctt
     5941 cagcaatttg tcgagtgttt caccggtcgc attaatcacc tctccgtcaa acaagtcgtg
     6001 accgcagcgt ccgcattttg ccgcatcttc gatccgatcg tcgggaatgc gattgatggc
     6061 ctgacaatgg gtacaaacgg tattcataac taacctcggg atgagtaagg agacttatcg
     6121 gcaacgacgc cggtatgttt ctaatatgtt acatattatc ggggacattg ttccagacaa
     6181 caatctgttt tattcaatag gtatgatagt cgcaggcttt ggtacgaaat catggcgaac
     6241 cgcgcggact tcgggtaatc tgcgcgcttc gcgcagcgct ggtggagaaa agcatgaacg
     6301 atgaaatgaa aggtaaaagc ggcaaggtca aagtgatgta tgtccgcagt gatgatgatt
     6361 ctgataaacg tacccacaac ccgcgtaccg ggaaaggggg cgggcgtcca ggaaaatctc
     6421 gtgctgacgg tggccgtcgc cccgcccgcg atgacaaaca gagtcagccc cgtgaccgca
     6481 agtgggaaga ttcgccgtgg cgcacggttt cccgcgcgcc gggtgatgag acgccggaaa
     6541 aggccgatca cggtggcatc agtggtaaaa gttttattga tccggaagtg ttgcgtcgtc
     6601 agcgtgcgga agaaacccgc gtctacggcg aaaacgcctg tcaggcactg ttccagagcc
     6661 gtccggaagc aattgttcgc gcctggttta tccagagcgt aacgccacgt tttaaagaag
     6721 ccttgcgctg gatggcggca aaccgcaaag cgtaccatgt ggtggatgaa gctgaattga
     6781 caaaagcgtc aggcacggaa catcacggcg gcgtttgctt cctgatcaaa aagcgtaacg
     6841 gtacaaccgt gcagcagtgg gtaagccagg caggcgcgca ggattgcgtt ctggcactgg
     6901 aaaacgaatc taacccgcat aacctgggtg gcatgatgcg cagctgcgcg cacttcggcg
     6961 tgaaaggtgt cgtggtgcag gatgcggcac tgctggagtc gggggcggct atccgtaccg
     7021 cagaaggcgg cgcagagcac gttcagccga ttactggcga caacattgtt aacgtgctgg
     7081 atgatttccg tcaggcaggt tacaccgtag tgaccacttc cagcgagcag ggtaaaccgc
     7141 tgttcaaaac tagtctgcca gcgaaaatgg tactggtgct gggtcaggaa tatgaagggt
     7201 taccggatgc cgcacgcgat ccgaacgatc tgcgcgtgaa gattgacggt acgggcaacg
     7261 ttgccgggct gaatatctct gtcgcaaccg gcgttttgct tggtgaatgg tggcgtcaga
     7321 ataaagcctg ataaatcagc cgggtggcaa ctctgccatc cggcatttcc ccgcaaattt
     7381 actcactctc tgccggtaat actggcatcc agtcaatcgg cgtctcgcca cgttgttcca
     7441 gccactgatt tgccagcaca aaatggttgc agccaaagaa tccacgatgc gccgaaagcg
     7501 gcgacggatg cggtgctttc agtacatgat ggcgttgctt atctataatc gcccctttct
     7561 tttgcgcatg tgatccccac aacaaaaaca ccacgccttc gcggtgctgg ttaatcaggc
     7621 tgatgacttt atcagtaaac gtctcccaac cgaggctggc gtgggaatgc gcctgacctg
     7681 cgcgaaccgt caacacagta ttgagcagga gaacgccctg acgcgcccag ctttcgagat
     7741 agccatgatt agggcgggtg aagcccggaa tagtattttc cagctcttta tacatattca
     7801 ataatgacgg aggaatggca atgccgggac gaacggaaaa tgccagacca tgcgcctgtc
     7861 ccggtccgtg ataaggatcc tggccgagaa tcaccacttt aacgtcaccc aactcggtaa
     7921 agcggaacgc gttaaagaca tctttttgtg gtggatagat agtgacgccg gactgccgct
     7981 cgctggcgac ggtctgaagg gtattaagaa aataaggttg ttgcttctct tcagccagca
     8041 cgtcatgcca ggttaattcg ttagccatct cgctctcctg cgaatcttca atccgcctag
     8101 cttaactgct tctttctaca gaacaaaatc atgctcattt tttagactta aacgagtgca
     8161 aaaaaatgta aattggtaaa atttcacacc cgcataagtt gatgtaaaac aataaaatcc
     8221 atttacgacc acaatcgatg tgtggttttt attgatttaa atcaaagaat caagggtggt
     8281 tgaggagtat atatacactc aagcaacaat ggttttacca attggccgcg acaggctgaa
     8341 caaatcaaat aattttgccg gggaggcatc acatgattac aggtatccag attactaaag
     8401 ccgctaacga cgatctgctg aactctttct ggctgctgga cagcgaaaaa ggcgaagcac
     8461 gttgcatcgt tgcaaaagca ggttatgcag aagatgaagt ggttgcagta agcaaactgg
     8521 gtgacattga ataccgtgaa gttccagtag aagtgaaacc agaagttcgc gttgaaggtg
     8581 gtcaacacct gaacgttaac gttctgcgtc gtgaaactct ggaagatgca gttaagcatc
     8641 cggaaaaata tccgcagctg accatccgtg tatccggtta tgcagttcgc tttaactctc
     8701 tgactccgga acagcagcgc gacgttatcg ctcgtacctt tactgaaagc ctgtaaggct
     8761 taagtagcaa gttactaagc ggaagagggc gacctcttcc gctttttttc gttaatagaa
     8821 aatgcgtacc gcgcaataga ccagcaacag ggcaagcacg atatttaact ggcgaccata
     8881 ctggcgaaac aatcgctgaa acagatgccc cgccagcgcc cagcacacat tgccaaacgt
     8941 cccaatcatc gccagcaaaa cgctgacgcc aactacccag cttagcgcct gtgtttgcgg
     9001 cagaacaaac gtcgacagtg ccgtaacacc gtacaaaatg attttgacgt tcacaaactg
     9061 caaagcaaag ctggcccaaa agctgattgg ttttgcctga agtccgtctt cctttgttgg
     9121 gctggtggcg attttccacg ccagccagac aatatatgcc gcccccgccc aactcaaaag
     9181 gtgtaccgct gccgggtcaa tcactgccag tgaaaatgaa atgcccgcac acagtaacat
     9241 cacaatcaaa aatcccagac tcatccctgc cagcacgcgg gtactttgac gaaatccatg
     9301 cgacgtagca gagctaaggg cgagaatatt gttcggtcct ggcgtcatag cggtaatcag
     9361 ggtgtaagtc caaaaagcac ttaaaagggt cggtgtcact tgttatctcc tctgttttgg
     9421 tagacagtac
//
LOCUS       DAJVUN010000152         9361 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.152, whole genome shotgun sequence.
ACCESSION   DAJVUN010000152 DAJVUN010000000
VERSION     DAJVUN010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9361
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.152"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            127..456
                     /locus_tag="OQQ76_003163"
     CDS             127..456
                     /locus_tag="OQQ76_003163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311560.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1969563.1"
                     /translation="MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAE
                     AARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGA
                     LLSMRKS"
     gene            704..949
                     /gene="nrdH"
                     /locus_tag="OQQ76_003164"
     CDS             704..949
                     /gene="nrdH"
                     /locus_tag="OQQ76_003164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HCS1969564.1"
                     /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR
                     AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA"
     gene            946..1356
                     /gene="nrdI"
                     /locus_tag="OQQ76_003165"
     CDS             946..1356
                     /gene="nrdI"
                     /locus_tag="OQQ76_003165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HCS1969565.1"
                     /translation="MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYIL
                     IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG
                     VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA"
     gene            1329..3473
                     /gene="nrdE"
                     /locus_tag="OQQ76_003166"
     CDS             1329..3473
                     /gene="nrdE"
                     /locus_tag="OQQ76_003166"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HCS1969566.1"
                     /translation="MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAF
                     MATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHTSGFRFQTF
                     LGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDATLALQLTDEMLSGRFQPA
                     TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG
                     APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN
                     ADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADIAISEHYDEL
                     VADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPVAGRINMSNLCSEIL
                     QVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSH
                     IRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT
                     SMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMW
                     AQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPA
                     PFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY
                     AWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL"
     gene            3483..4442
                     /gene="nrdF"
                     /locus_tag="OQQ76_003167"
     CDS             3483..4442
                     /gene="nrdF"
                     /locus_tag="OQQ76_003167"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HCS1969567.1"
                     /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA
                     WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHA
                     RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF
                     LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL
                     KSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMA
                     EVNPAILAALSPNADENHDFFSGSGSSYVMGKAVETEDEDWNF"
     gene            4797..5999
                     /gene="proV"
                     /locus_tag="OQQ76_003168"
     CDS             4797..5999
                     /gene="proV"
                     /locus_tag="OQQ76_003168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein ProV"
                     /protein_id="HCS1969568.1"
                     /translation="MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV
                     KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE
                     VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS
                     YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI
                     VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA
                     KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT
                     QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL
                     DREGVNNG"
     gene            5992..7056
                     /gene="proW"
                     /locus_tag="OQQ76_003169"
     CDS             5992..7056
                     /gene="proW"
                     /locus_tag="OQQ76_003169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     permease ProW"
                     /protein_id="HCS1969569.1"
                     /translation="MADQNNPWDTTPAADSAVQSADAWGTPATAPTDGGGADWLTSTP
                     APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL
                     GMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI
                     VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA
                     LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL
                     SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR
                     GNRRWYTTGPVGLLTRPFIK"
     gene            7114..8106
                     /gene="proX"
                     /locus_tag="OQQ76_003170"
     CDS             7114..8106
                     /gene="proX"
                     /locus_tag="OQQ76_003170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708493.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     substrate-binding protein ProX"
                     /protein_id="HCS1969570.1"
                     /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ
                     TLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKK
                     FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPG
                     WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL
                     KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWTEKNPAAAKLF
                     AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK"
     gene            8398..>9361
                     /locus_tag="OQQ76_003171"
     CDS             8398..>9361
                     /locus_tag="OQQ76_003171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969571.1"
                     /translation="MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLS
                     ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLITASSQSLAMM
                     ILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL
                     GGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRAL
                     LGCLTFANFSILWTSMAFLLAAPPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKS
                     HHTTTFGLLLLLLSWLAIWFGHTSVLALIIGILVLDLTVQGVHIT"
BASE COUNT         2217 a         2415 c         2415 g         2314 t
ORIGIN      
        1 cgggcctacc ttacctgatt gcgcattcac aacgctttca gaaaagtcca taaagccgcg
       61 atgaacctca gttaagaaaa ttatggtcta cactgaaaat tacatcgaat tctaatgggg
      121 gatcatatgt ttaaccgacc gaaccgcaac gacgttgatg atggcgtgca ggatatccag
      181 aatgatgtca atcaattagc tgacagcctc gaatctgtat tgaagtcctg gggcagcgac
      241 gccaaagggg aagctgaagc cgcacgcagt aaagctcagg cgttgctgaa agaaaccagg
      301 gcgcgaatgc atggtcgtac tcgcgtccag caagccgcgc gcgatgccgt tggctgcgcg
      361 gattcttttg ttcgtgaaag accctggtgt agcgtgggta cagcagctgc ggtaggtatt
      421 tttatcggcg cactgttaag catgcgcaaa tcgtagtgca aaaatgataa taaatacgcg
      481 tctttgaccc cgaagcctgt cttcggggtt tctttttgcc tggtgaatca caaaaatccc
      541 cctcccccgt cacgctcata tccagggtaa tttcgatcac tatttgctat atattgtgta
      601 gttgaatctt ttttcaacta catctagtat ctctgtatca acagagagac aacccgacgc
      661 gtatcatcgc gccgtatctt cattttaaac ggaaatacga atcatgcgca taactattta
      721 tactcgtaac gattgcgttc agtgccacgc caccaaacgg gcgatggaaa accgggggtt
      781 tgattttgaa atgattaatg tcgatcgcgt tcctgaagca gcggaagcgt tgcgtgctca
      841 gggctttcgt cagttgccgg tagtgattgc tggcgatctt agctggtctg gtttccgtcc
      901 ggacatgatt aaccgtctgc atccagcgcc acacgcggcc agtgcatgag ccagctcgtc
      961 tacttctcca gcagctccga aaacacgcag cgttttatcg aacgtttagg tctgcccgcg
     1021 gtgcgcatcc cgctcaatga gcgggaacgg attcaggtag acgagcctta catcctgatc
     1081 gtgccctctt acggcggcgg cggtacggct ggcgcggtgc cacgacaggt aattcgcttt
     1141 ttaaacgacg agcacaaccg ggcgttgctt cgcggcgtta ttgcttctgg taatcgcaac
     1201 tttggtgagg cgtatggccg cgccggagat gtgattgccc ggaaatgcgg cgtgccgtgg
     1261 ctgtaccgtt ttgaactcat gggtacgcaa agcgatatcg aaaacgttcg taaaggagta
     1321 accgaatttt ggcaacgaca accgcagaat gcctgacgca ggaaacgatg gattaccacg
     1381 cgctgaatgc gatgcttaac ctctacgata gcgcaggtcg cattcagttc gataaagacc
     1441 gccaggccgt tgacgccttt atggcgacgc atgtgcgtcc gaacagtgtg actttcagta
     1501 gccagcagca gcgcctgaac tggctggtca acgaaggtta ctatgatgaa agcgttctta
     1561 atcgctactc tcgcgacttt gtcattacgc tgtttgccca cgcacacacc agcggttttc
     1621 gtttccagac attcctcggg gcatggaagt tttacaccag ctatacgttg aagacattcg
     1681 acggtaaacg ttatctggaa gattttgccg atcgagtcac gatggtggcg ctgacgctgg
     1741 cacaaggcga tgcgacgctg gcgttgcaac tgaccgatga aatgctgtca ggacgctttc
     1801 agccagccac gccgacattc ctcaactgcg gtaagcagca gcgcggcgaa ctggtttcct
     1861 gttttctgct gcgtattgaa gacaatatgg agtcgattgg ccgggcggta aattccgcac
     1921 tgcaactgtc gaaacgcggc ggcggcgtgg catttttgct gtcgaatctg cgagaagcgg
     1981 gcgcgccaat taaacgtatt gaaaatcaat cttctggcgt aattccggtg atgaaaatgc
     2041 tggaagacgc attttcctat gccaaccaac tcggcgcgcg tcagggggca ggtgcagtct
     2101 atttacatgc tcatcatccc gatattctgc gttttctcga tacaaaacgg gaaaatgccg
     2161 acgaaaaaat ccgcattaaa acactgtcgc tgggcgtggt gatcccggat atcactttcc
     2221 atctggcaaa agagaatgcg cagatggcgc tgttttcgcc ctatgacgtt gagcgagttt
     2281 atggcaagcc gtttgccgat atcgccatca gcgaacacta tgacgaactg gttgccgatg
     2341 aacgcatccg caaaaaatac ctcaacgccc gtgatttctt ccagcggctg gcagaaatcc
     2401 agtttgagtc cggctatccc tacatcatgt atgaagacac ggtaaaccgt gctaaccctg
     2461 tcgccgggcg cataaatatg agtaatctct gctcagagat tttgcaggtc aactgtgcct
     2521 cagagtatga cgagaatctc gactatgccc gcacaggcca tgatatctcc tgcaatttag
     2581 gttcgttgaa tattgcgcac accatggatt cccccgattt tgcccgcacg gtagagactg
     2641 ccgtgcgcgg tttaacggcg gtgtcagata tgagtcatat ccgcagcgtg ccgtccatcg
     2701 aagccggaaa tgccgcctca cacgccatcg gactggggca gatgaattta cacggctatc
     2761 tggcgcgaga aggcatcgct tatggttcgc cggaagcact ggatttcacc aatctctatt
     2821 tctatgccat cacctggcac gcactgcgta cctcgatgtt gctggcgcgc gaacgcggtg
     2881 aaaccttcgc cgggttcaaa cagtcacgtt atgccagtgg tgaatatttt agccaatatc
     2941 tgcaaggtaa ctggcagccg aaaacggcga aagttggcga actgtttgcc cgcagcggta
     3001 ttacgttacc tacccgtgag atgtgggcgc aactgcgcga cgacgtgatg cgctacggca
     3061 tttataacca gaatcttcag gcggtgccgc caaccggttc tatctcttat atcaaccatg
     3121 ctacgtcgag tattcatccg attgtggcga aagtagagat acgcaaagag ggcaaaacag
     3181 gacgcgttta ctaccctgcc ccgtttatga ctaacgagaa tctggcgctg tatcaggatg
     3241 cttacgaaat cggcgcagaa aagatcatcg acacctacgc cgaagcgact cgccatgtcg
     3301 atcaggggct gtcgctgacg ctgtttttcc ccgataccgc caccactcgc gatatcaaca
     3361 aagcgcagat ttacgcctgg cgcaagggta tcaaaacgct ctattacatt cgcctgcgtc
     3421 agatggcgct ggaaggcact gaaattgaag gctgcgtctc ctgtgcactt taaggaatat
     3481 ctatgaaact ctcacgtatc agcgccatca actggaacaa gatatctgac gataaagatc
     3541 tggaggtgtg gaatcgcctg accagcaatt tctggctacc agaaaaggtg ccgctgtcga
     3601 acgatattcc tgcctggcag acattaactg tcgtagaaca acaactgacg atgcgcgttt
     3661 ttactggcct gacgctgctc gacacgctgc aaaatgttat cggcgcgcct tcgctgatgc
     3721 ccgatgcact cacgcctcat gaagaagcgg tattatcgaa tatcagcttt atggaagcgg
     3781 ttcatgcccg ctcttacagt tcgattttct cgacgctgtg tcagaccaaa gatgtcgatg
     3841 ccgcctacgc ctggagtgaa gaaaacgcac cgttgcagcg aaaagctcag attattcagc
     3901 aacattatcg cggtgatgat ccgctgaaaa agaaaatcgc cagtgtgttt cttgaatctt
     3961 ttttgttcta ttccggtttc tggctgccga tgtatttttc cagccgcgga aagctgacca
     4021 ataccgcaga tctgatccgt ctgattatcc gcgatgaagc agtccacggt tactacatag
     4081 gctataaata tcagaaaaac atggaaaaga tatctctggg acaacgtgaa gagttgaaga
     4141 gtttcgcctt cgatttgttg ctggaactct acgacaacga gttgcaatac accgatgagc
     4201 tgtacgccga aaccccgtgg gctgacgatg tgaaagcgtt tctctgttac aacgccaata
     4261 aggctttgat gaatctgggc tacgaaccgt tatttcccgc agaaatggcg gaagtgaatc
     4321 cggcaatcct cgccgcgctt tcgccgaatg ccgatgaaaa tcacgatttc ttttccggtt
     4381 caggctcctc ttatgtgatg gggaaagcgg ttgaaacaga agatgaagac tggaatttct
     4441 gagggtgtta ttttcaaaaa tatcactacc cgcagcaggg aaataattcc cgccaaatag
     4501 ctttttatca cgcaaatatt ctgtagtgat ctacactgag actctgttgc attattcgcc
     4561 tgaaactaca atattcaggc gttttttcgc tatctatgac aaaaaatatc aacttttctc
     4621 gatttgctct cagcccttat atcacgggaa attccggcga tttgctcgca tcaatattca
     4681 tgccacattt gccctcaggg gttgcctcag attctcagta tgttagggta gaaaaaagtg
     4741 actatttcca ttgggtaata tatcgacata aacaaataaa ggaatctttc tattgcatgg
     4801 caattaaatt agaaattaaa aatctttata aaatatttgg cgagcatcca cagcgagcgt
     4861 tcaaatatat cgaacaagga ctttcgaaag aacaaattct ggaaaaaact gggctatcgc
     4921 ttggcgtaaa agacgccagt ctggccattg aagaaggcga gatatttgtc atcatgggat
     4981 tatccggctc gggtaaatcc acaatggtac gccttctcaa tcgcctgatt gaacccaccc
     5041 gcgggcaagt gctgattgat ggtgtggata ttgccaaaat atccgatgcc gaactccgtg
     5101 aggtgcgcag aaaaaagatt gcgatggtct tccagtcctt tgccttaatg ccgcatatga
     5161 ccgtgctgga caatactgcg ttcggtatgg aattggccgg aattaatgcc gaagaacgcc
     5221 gggaaaaagc ccttgatgca ctgcgtcagg tcgggctgga aaattatgcc cacagctacc
     5281 cggatgaact ctctggcggg atgcgtcaac gtgtgggatt agcccgcgcg ttagcgatta
     5341 atccggatat attattaatg gacgaagcct tctcggcgct cgatccatta attcgcaccg
     5401 agatgcagga tgagctggta aaattacagg cgaaacatca gcgcaccatt gtctttattt
     5461 cccacgatct cgatgaagct atgcgtattg gcgaccgaat tgccattatg caaaatggtg
     5521 aagtggtaca ggtcggcaca ccggatgaaa ttctcaataa tccggcgaat gattatgtcc
     5581 gtaccttctt ccgtggtgtt gatattagtc aggtattcag tgcgaaagat attgcccgcc
     5641 ggacaccgaa tggcttaatt cgtaaaaccc ctggcttcgg cccacgttcg gcactgaaat
     5701 tattgcagga tgaagatcgc gaatatggct acgttatcga acgcggtaat aagtttgtcg
     5761 gcgcagtttc catcgattcg cttaaaaccg cgttaacgca gcagcaaggt cttgatgcgg
     5821 cgctgattga tgcgccgtta gcagtcgatg cacaaacgcc tcttagcgag ttgctctctc
     5881 atgtcggaca ggcaccctgt gcggtgcccg tggtcgacga ggaccaacag tatgtcggca
     5941 tcatttcgaa aggaatgctg ctgcgcgctt tagatcgtga gggggtaaat aatggctgat
     6001 caaaataatc cgtgggatac cacgccagcg gcggacagtg ccgtgcaatc cgcagacgcc
     6061 tggggtacac cggcgactgc accgactgac ggcggtggtg ctgactggct gaccagtacg
     6121 cctgcgccaa acgtcgagca ttttaatatt ctcgatccgt tccataaaac gctgatcccg
     6181 ctcgacagtt gggtcactga agggatcgac tgggttgtta cccatttccg tcccgtcttc
     6241 cagggcgtgc gcgttccggt tgattatatc ctcaacggtt tccagcaatt gctgctgggt
     6301 atgcccgcac cggtggcgat tatcgttttc gctctcatcg cctggcagat ttccggggtc
     6361 ggaatgggcg tggcgacgct ggtttcgctg attgccatcg gcgcaatcgg tgcctggtcg
     6421 caggccatgg ttaccctggc gctggtgtta accgccctgc tgttctgtat cgtcattggt
     6481 ttgccgctgg ggatctggct ggcgagaagt ccgcgagcgg cgaaaattat tcgtccactg
     6541 cttgatgcca tgcagaccac gccagcgttt gtttatctgg tgccaatcgt catgctattt
     6601 ggtatcggta acgtgccggg cgtggtggtg acgatcatct ttgctctgcc gccgattatc
     6661 cgtctgacca ttctggggat taaccaggtt ccggcggatc tgattgaagc ctcgcgctca
     6721 ttcggtgcca gcccgcgcca gatgctgttc aaagttcagt taccgctggc gatgccgacc
     6781 attatggcgg gcgttaacca gacgctgatg ctggcccttt ctatggtggt cattgcctcg
     6841 atgattgccg tcggcgggct gggtcagatg gtacttcgcg gtatcggtcg tctggatatg
     6901 gggcttgcca ccgttggcgg cgtcgggatt gtgatcctcg ccattatcct cgatcgcctg
     6961 acgcaggccg ttgggcgcga ctcacgcagt cgcggcaacc gtcgctggta caccactggc
     7021 cctgttggtc tgctgacccg cccattcatt aagtaactct gcacttgccc ggtgacgccg
     7081 ggcattatca ccctgccaaa aaaaggaata acaatgcgac atagcgtact ttttgcgaca
     7141 gcgtttgcca cgcttatctc tacacaaact tttgctgccg atctgccggg caaaggtatt
     7201 actgttaatc cagttcaaag caccatcacc gaagaaacct tccagactct gctggtcagc
     7261 cgtgcgctgg agaaattagg ctataccgtc aacaaaccca gcgaagtaga ttacaacgtt
     7321 ggctacacct cgcttgcttc cggcgatgca accttcaccg ccgtgaactg gacgccactg
     7381 catgacaaca tgtacgaagc tgccggtggc gataagaaat tttatcgtga aggggtattt
     7441 gttaacggcg cggcacaggg ttacctgatc gataagaaaa ccgccgacca gtacaaaatc
     7501 accaacatcg cacaactgaa agatccgaag atcgccaaac tgttcgatac caacggcgac
     7561 ggtaaagcgg atttaaccgg ttgtaaccct ggctggggct gcgaaggtgc gatcaaccac
     7621 cagcttgccg cgtatgaact gaccaacacc gtgacgcata atcaggggaa ctacgcagcg
     7681 atgatggccg acaccatcag tcgctacaaa gagggcaaac cggtgtttta ttacacctgg
     7741 acgccgtact gggtgagtaa tgagctgaag ccagggaaag atgtggtctg gttgcaggtg
     7801 ccgttctccg cactgccggg cgataaaaat gccgatacca aactgccgaa tggcgcgaat
     7861 tacggcttcc cggtcagcac catgcatatc gttgccaaca aagcctggac cgagaaaaat
     7921 ccggcggcag ccaaactgtt tgccattatg cagttgccag tggccgatat taacgcccag
     7981 aacgccatta tgcatgacgg caaagcctca gaaggcgata ttcagggcca cgttgatggc
     8041 tggatcaaag cccaccagca gcagttcgat ggctgggtga atgaggcgct ggcagcgcag
     8101 aagtaatttt tattcaggcg gataaggcgt ttttgcctca tccgccgctc tgtacacaat
     8161 gcctgatgcg acgctgacgc gtcttatcat gcctacaaaa tacactcatt ccgtatggcg
     8221 gataaggcgt tttcgccgca tccgccgttc tgtgcacaat gcctgatgcg acgctggcgc
     8281 gtcttatcat gcctacaaac cacatcgcac atttcaacaa gctatctttc atcccatatt
     8341 catcaacatc cgctattatt gatttccagc ttaatcatca cctgatgaac aaaaataatg
     8401 actaaaccta atcatgagct tagcccggcg ctgatcgtgc tgatgtctat cgccaccggt
     8461 ctggcggtag ccagtaacta ttacgcccag ccattgctcg acaccatcgc gcgtaacttt
     8521 tccctttccg ccagttcggc aggctttatt gttaccgccg cgcaattggg ctatgcagca
     8581 ggtctgctgt ttcttgttcc cctcggtgat atgtttgaac gccgccgcct gattgtctcg
     8641 atgaccttac tggcggcagg cggcatgtta atcactgcca gcagtcagtc gctggcgatg
     8701 atgatcctcg gtacggcatt aaccggttta ttctctgtcg tggcacaaat tctggttccg
     8761 ctggcagcga cgctggcttc accggacaaa cgcggcaaag tggttggcac tattatgagc
     8821 ggtctgctgt tggggatctt actcgcacgg accgttgccg gattgctggc gaatctcggc
     8881 ggctggcgca ccgtcttttg ggttgcctcg gtgttaatgg cactgatggc gctggcatta
     8941 tggcgtggtc tgccacaaat gaaatcagaa acccacctca actacccaca gttgttaggt
     9001 tccgttttca gcatgtttat cagcgataag atcctgcgca cccgcgcatt gctgggctgc
     9061 ctgacctttg ccaacttcag cattctctgg acctcaatgg cctttttgct tgccgctcca
     9121 ccttttaact acagcgatgg tgtcattggt ctgtttggac ttgcgggagc tgccggagcg
     9181 ttgggcgctc gtccggcggg cggttttgcc gataagggta aatcgcacca caccacaact
     9241 ttcggtctgc tgctgctatt actttcatgg ctggcgatct ggtttggtca cacttccgta
     9301 ctggcgctga ttatcggcat cctggtgctg gatctcaccg tacagggcgt gcatatcact
     9361 a
//
LOCUS       DAJVUN010000153         9272 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.153, whole genome shotgun sequence.
ACCESSION   DAJVUN010000153 DAJVUN010000000
VERSION     DAJVUN010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9272
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.153"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..554)
                     /locus_tag="OQQ76_003172"
     CDS             complement(<1..554)
                     /locus_tag="OQQ76_003172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HCS1969572.1"
                     /translation="MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLD
                     VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQAR
                     QLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATH
                     NSMLVELFRQSWQWRENNPMWIQL"
     gene            complement(769..2229)
                     /locus_tag="OQQ76_003173"
     CDS             complement(769..2229)
                     /locus_tag="OQQ76_003173"
                     /EC_number="1.1.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
                     /protein_id="HCS1969573.1"
                     /translation="MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHH
                     LLESTDSDWGICEVNLMPGNDRVLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALH
                     PEIDGCEGILNAMARPQTAIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKS
                     AIGYIVEALRLRREKGLKAFTVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENV
                     TFPCTMVDRIVPAATPETLQEIADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKV
                     GAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYETIADTMTNPDYRKAAFALMMQE
                     QAPTLSMPEGTDLKAYATLLIERFSNPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQN
                     GGSWRHLALGVAGWMRYTQGVDEQGNAIDVVDPMLAEFQKINAQYQGADRVKALLGLS
                     GIFADDLPQNADFVGAVTAAYQQLCERGARECVAAL"
     gene            complement(2310..3494)
                     /gene="uxuA"
                     /locus_tag="OQQ76_003174"
     CDS             complement(2310..3494)
                     /gene="uxuA"
                     /locus_tag="OQQ76_003174"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709912.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HCS1969574.1"
                     /translation="MEQTWRWYGPNDLVSLADVRQAGATGVVTALHHIPNGEVWSVEE
                     ILKRKAIVEDAGLVWSVVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCY
                     NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAE
                     RFATMSDEDKARLTRNIIAGLPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKA
                     IIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYG
                     VRADNDLVDMIKQFGPRIYFTHLRSTMREDNPKTFHEAAHLNSDVDMYEVVKAIVEEE
                     HRRKAEGKEDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF
                     SR"
     gene            3834..4038
                     /locus_tag="OQQ76_003175"
                     /pseudo
     CDS             3834..4038
                     /locus_tag="OQQ76_003175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646216.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4281..5183)
                     /gene="fimH"
                     /locus_tag="OQQ76_003176"
     CDS             complement(4281..5183)
                     /gene="fimH"
                     /locus_tag="OQQ76_003176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria D-mannose specific adhesin FimH"
                     /protein_id="HCS1969575.1"
                     /translation="MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVN
                     LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSS
                     YPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNS
                     DDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYL
                     SGTTADAGNSIFTNIASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTAN
                     YARTGGQVTAGNVQSIIGVTFVYQ"
     gene            complement(5203..5706)
                     /gene="fimG"
                     /locus_tag="OQQ76_003177"
     CDS             complement(5203..5706)
                     /gene="fimG"
                     /locus_tag="OQQ76_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimG"
                     /protein_id="HCS1969576.1"
                     /translation="MKWRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTT
                     NATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQG
                     TAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVI
                     SITYTYS"
     gene            complement(5719..6249)
                     /gene="fimF"
                     /locus_tag="OQQ76_003178"
     CDS             complement(5719..6249)
                     /gene="fimF"
                     /locus_tag="OQQ76_003178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709916.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimF"
                     /protein_id="HCS1969577.1"
                     /translation="MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAES
                     TNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLA
                     LENTVSAASGLGIQLLNEQQNQIPLNALSSAISWTTLTPGKPNTLNFYARLMATQVPV
                     TAGHINATATFTLEYQ"
     gene            complement(6259..8894)
                     /gene="fimD"
                     /locus_tag="OQQ76_003179"
                     /pseudo
     CDS             complement(6259..8894)
                     /gene="fimD"
                     /locus_tag="OQQ76_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418737.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher FimD"
     gene            complement(8961..>9272)
                     /gene="fimC"
                     /locus_tag="OQQ76_003180"
     CDS             complement(8961..>9272)
                     /gene="fimC"
                     /locus_tag="OQQ76_003180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418736.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HCS1969578.1"
                     /translation="LQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPT
                     PYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGALTPKMTGVM
                     E"
BASE COUNT         2206 a         2456 c         2296 g         2314 t
ORIGIN      
        1 tgcaactgga tccacattgg attgttttcc cgccactgcc aggactgacg gaataactcc
       61 accagcatgc tgttatgcgt tgcttcagca atggcgagat ggaactgcat gtcaccgctt
      121 tcgctgctac ccggcgcgct ggaagccagt tcacgctctt ccagttgcaa tgcctgacgc
      181 attttgacga tatcttcgcg ggtagcctgc agggcggcaa attccgcgat gttgctctca
      241 agaagctgtc gcgcctgcaa caattcaaag gggccggcat cattgcagac gttggcatcc
      301 ggactgtctg tgttgtggct gcctgagcta tcaagaacat agataccggc accccggcgc
      361 acttccacca gccctttgat ctccagcatg atcagcgctt cacgtaccac cgtccgcgtg
      421 acatcaagca tttctgcaat ttcacgctcc ggcggcagcc gttcgccagg attgtacggc
      481 gtctttatga tcagatcgcg gatcatcgcc ccgacttcct ggtaaggtct ttgcgcagag
      541 gtggcagatt tcatggtgtt gtgtccgtta ggtgcggtta atcaaatttt tgccggatgc
      601 ggcgtgaacg ccttatccgg cctacaacgg gcaattttac ggcccccgtt aatctcaaac
      661 tataccatta gcactggaag ttggcacgta caggtgggca aaaaaacgaa aactggtcaa
      721 ccaaatatca gtttgattga ccagtaagtc tgtagggtaa tcagttagtt acagcgcagc
      781 cacacactcg cgcgcaccgc gttcgcacag ctgctgatat gccgccgtca ccgcgccaac
      841 aaagtcggca ttctgcggca gatcatcggc aaaaataccg ctcaggccca gcagcgcttt
      901 cacgcggtct gcgccctgat actgcgcgtt aatcttctgg aactcggcca gcatcgggtc
      961 gaccacgtca atggcattac cctgctcatc cacgccctgg gtgtaacgca tccagccagc
     1021 cacgcccagc gccaggtgac gccagctgcc gccgttttgc aggtgcagac gcaccgggtc
     1081 cagcagacgc tgcggtaact tctggctgcc gtccatcgca atctgccagg tacggtgacg
     1141 cagagacggg ttgctgaaac gctcgatcag cagcgtcgca taggccttca ggtccgtacc
     1201 ctccggcata gacagcgttg gcgcttgttc ctgcatcatc agggcaaagg ccgctttgcg
     1261 ataatccggg ttagtcatgg tgtcggcaat agtttcatag ccgccgaggt aaccgaggta
     1321 tgccaggaaa gagtggctgc cgttcagcat acgcagcttc atcatttcga acggcacaac
     1381 gtctgcaacg aactgtgcgc ccactttatc ccagtccggg cgaccattaa cgaagttatc
     1441 ttcaatcacc cactgacgga acggttcgca ggcaatggcg cacgggtcgt aaacacccag
     1501 ctgatcagca atttcctgta aggtttctgg cgtcgccgcc ggaacgatgc ggtcaaccat
     1561 ggtgcacggg aaggtgacgt tctcttcaat ccatgccgcc agctgcgggt cacgtgcctg
     1621 agccagcccc agtaccgcga ccttcgccac atgaccgttt tcacgcacgt tatcgcagga
     1681 catcaccgta aatgctttca gccctttttc acgacgcaga cgcaaggctt cgacgatgta
     1741 accaatcgcg gacttcggcg cagtcgggtt ttctagatcg tgcttgatca gcgggttatt
     1801 gagatccagt tgaccgcttg ccgcatcagc gcagtagcct ttttccgtga ccgttagaga
     1861 gacaatcgcc gtttgcggac gcgccatcgc gttgagaata ccttcgcagc cgtcgatttc
     1921 cggatgcagc gcttctttca tcgaaccgat aattttcagc tcggtgcttt ctgcgccttt
     1981 ttccgctacg gtgtacagca gttgctgttt tttcaggttt tcgatcagca cgcggtcgtt
     2041 gcctggcatc aggttaactt cgcagatgcc ccagtcgctg tcggtgcttt ccagcagatg
     2101 atgggtatac agcgcctgat gtgcgcggtg aaacgccccg caaccgagat gcacaatgcg
     2161 tgattccaga cgagaatgat cccatgacgg gcgggcaacc ggcagattgc tgtcaacaat
     2221 agtagtcatc gtaaactcca gaatccgtct tcagagagtg acggcaagga agaaggaacc
     2281 ggcacggcgc gcagccatgc cggtggatat taacggctaa agaaagcgcg ctggatcgcc
     2341 agttcgacac cgcgaacttc ggccaggcct ttcagacgac caattgcgga gtaacctggg
     2401 ttggttttct tcttcaggtc gtccagcatc tgatgaccgt ggtccggacg catcgggatc
     2461 aggtcttctt tgccttccgc tttacgacgg tgttcttctt caacaatcgc tttcaccact
     2521 tcgtacatat caacgtcact gttcaggtgc gccgcttcgt ggaaggtttt cgggttatct
     2581 tcacgcatgg tggagcgcag atgggtgaag taaatacgcg gaccgaactg cttgatcata
     2641 tcaaccagat cgttgtcagc acgcacgccg taggaaccgg tgcacatggt gaaaccgttc
     2701 gccatgctgt ttacggtatc aaccatccac tgcatatctt caatggtgga aacaatgcgc
     2761 ggcaggccga ggatcgggcg cggcggatcg tccgggtgaa ccgccatacg cacgccaact
     2821 tcttcagcaa ctggaataat cgctttcagg aagacggcaa agttttcgcg cagcttcgct
     2881 ttatcgatat ctttgtacag ctccaggtgc ttacggaact ggtcgagggt atacccttct
     2941 tccgcgcccg gcagaccggc aatgatgtta cgcgtcagac gcgctttgtc ttcatcgctc
     3001 atagtggcga agcgttcagc tgcctgagca atttcttctt cggtgtaatc cgcttccgcg
     3061 cctggacgtt tcaggatatg catttcgaat gcagcgaatt cgatctggtc gaagcgcaga
     3121 gctttggagc cgtctggcag cacgtattcg aggtcagtac gggtccagtc gagcaccggc
     3181 atgaagttgt agcacacggt gcgaatgccg cactgcgcca ggttgcgcag agtctgctga
     3241 tagttagcga tccactgctc atagttgcca gtgtgggttt tgatatcttc gtgaattggt
     3301 acgctttcta cgacagacca caccaggcct gcgtcttcaa cgatcgcctt gcgtttgagg
     3361 atctcttcta cggaccatac ttcgccgttc gggatatggt gcagcgcggt aaccacgcca
     3421 gttgcgcccg cctgacggac atcagctaaa gaaaccagat cgtttgggcc gtaccagcgc
     3481 caggtctgtt ccatgatttt tcctctttca catagtgggt tccacagcaa agagacgcgg
     3541 aaccctggag ttgtttaggt atccggatga acaaccagac cgcagccgtg gcgttgcatc
     3601 ggatgagatg gcgcataagt tctagctttt ggtaagatat gtcaagccga attctgaaat
     3661 tggttaacca aattacaaga atttcactct catggttgtt gctgcaaatt gcagcaaaag
     3721 gtaatcgatg gttattgatc agaggatgtg acattcatcg caacaatggt tgaccaattt
     3781 acataacatg tcgcccaaaa taacaacggt tcaaccaggt aaggtaaaac gttatgcatg
     3841 tgcttaacat tctctgggta gtattcggca ttggtctgat gctggtactg acaacgaccg
     3901 caggttcaga cacattcact gcattagcaa tgcctcttag attattttga cctgtcagta
     3961 aaagacacgt tgaaaacctg gggtctgctg gagctggtca actccgtggt tgggctgatt
     4021 attagcaagg tagcgtaaaa gaacaccaga gcctgccaat ggcaggctct gactgatgac
     4081 aaagtctaaa aatgtgcccg gacagtcccc tcgcccctcc ggggagaggg ttagggtgag
     4141 gggaacagac cagcaaagtg cgctttgttt atgccagatg cgacgctgac gcgtcttatc
     4201 tggcctacaa agggctaacg tgcaggtttt tagcttcagg taatattgcg taactgcatt
     4261 agcaatgccc tgtgatttct ttattgataa acaaaagtca cgccaataat cgattgcaca
     4321 ttccctgcag tcacctgccc tccggtacgt gcgtaatttg ccgttaatcc cagacttacc
     4381 gccgaagttc ctactgctcc taacgatacc gtgttattcg ctggaataat cgtaccgttg
     4441 cgcgtcaact gtacgccgac gccctgtgct ggtgaaaacg acgcgatatt ggtgaaaatc
     4501 gagttgcccg catctgcggt tgtgccggag aggtaatacc ccaggttttg gcttttcgca
     4561 caataaacgg taagaggaat tggcactgaa ccagggtagt ccggcagagt aacggtgaca
     4621 tcacgagcag aaacatcgca gccgccagta ggcaccacca catcattatt ggcgtaaata
     4681 ttccacacaa actggaaatc atcgctgtta tagttgttgg tctgtcgcaa aataagcacg
     4741 gcaattaatg agccagcttt aatcgccacc ccgcccgcac tgctcacagg cgtcaaataa
     4801 agcgccaccg gccacggctt atccgttctc gaattataaa caacccgcgg cgtttcgctg
     4861 gtggtcggaa atggatagct actgccacta tattttacgg tcccggaaaa attagataac
     4921 acgccgccat aagccgagcc tcgttgcagt gtgacatagt ctgtaatggt ttccggataa
     4981 tcgttatggc aaaagatttg cgtcgaaaga tctacgacca ggttttgccc cacattcacg
     5041 acaggcgcaa ggtttacata aacattagcg ctgccaccgc caatagggat agcagtacca
     5101 ttggcggttt tacaggcgaa tgaccaggca tttaccgacc agcccatcag cagtacagca
     5161 aacagggtaa taactcgttt cattacaatt atctcttcgg gttcagctgt aggtataggt
     5221 gatgctaatc actgcctgaa tggttccctg agtggctccg ccatttaccg tcaatgctct
     5281 gacctgtaac gggaagtgcg ctgattgtga ggaatcatcc acctgaactg ttttggttgc
     5341 gccagtattc aatgtgttgc cactgtcatc ctgtagctct aactggatgt tttgcgcggt
     5401 cccctggttt ttataatatc cggtactgtc ggctgccccg ctgaagctgg cagtgaccct
     5461 cgacgttccc accggacaat tagtcaactc aagcgcaaca tcatgccagg ccgatgccgc
     5521 cccggcagac atcagactga aagaataaag atcgccgaga tcaaccgtgg cattggtggt
     5581 ggaaactgtg cacggtttgg cgacgacctt accgttcacc gtgatggtga catcggctgc
     5641 ctgtattgtc gcacttgcga gcgccaatat tgccgccaat aaatacccac gtttgcgcca
     5701 tttcatgagc atctccagtt actgatattc aagagtgaag gtagccgtgg cattgatatg
     5761 ccccgcagtg acaggcacct gtgtcgccat tagccgggcg taaaaattca acgtatttgg
     5821 tttacccggc gtcagggtcg tccacgaaat cgcggacgat agagcattaa ggggtatctg
     5881 attttgctgc tcattcagaa gctgtattcc cagtcccgaa gccgcagaca ccgtattttc
     5941 aagtgcaagc aggttggcat tgtggctatc tgcaacgccg gtaaacccaa cctttacggc
     6001 agaaacggcg ttaccacagg gtgacagcaa aatacgaaat ggaacgacag gagtcgttgc
     6061 accaatgttg ttaaattgct tcgccgcgtt ttccatcaga tcaacagtaa aattggttga
     6121 ttcagcggcc acactacagc cgttatctct gacatagccg cggatagtaa tcgtgctatc
     6181 cgcagccaaa acgcgactta ccgccagcca caaaaaagcg cacagaagat aaaaaggttt
     6241 gtttctcatc acgccccctt aacgacattc agctgatagc tgggttaata actgctgctg
     6301 actctctggt ggcagttgat aattggcgat acagtgagca ttttcctctt ctccccattt
     6361 cacctgaact tttcccgcta aaggcattcc gctgaggtaa acctgaccat tatccgcaac
     6421 aatgccgcta ctctggctac tctctgatgt caccatcgcc ccaaacggca gcggcttatt
     6481 attgtgggtt agcgtcatga gcagttttat cccaacgcgc gctttaaact ctgctcgcac
     6541 gatcgcccca cgagtgggaa caacgttagc gaccgcgtta tctaaatcga cgttatcagc
     6601 cagggtattg gtatccagcg ccactctgtt ttcccgatat tcggtggcat aaggcagcac
     6661 ggcataaccg cgccagtcgg tacgcacccc cgtctggttt tcgacttttg catcttttgc
     6721 gccaggcgct ttaacaagta ccaccgtatc gtttaacggc tgccccagcg ttacgccatt
     6781 ggcatgagcc agtaccccac cgctgactcc gtaatagagc tgcttaatat catcgctatg
     6841 gctgtaaccg atattggcat tgccgtaacc accgcgataa ttcagcgtgg cgtagcctgt
     6901 acttccgcta ttaccatcgc ctcccccggc atagccggtt tgcacgctat agctgaggtt
     6961 gttgtcttcc agcaacgtac cgtatacacc agccagattg gtcatccgac cgttgagatc
     7021 gtgtgacatg ctgtagctgg cactggcatg tcgccactga gatttactgt cagaacgcag
     7081 ccagtggctg aaaggaatat tgacgttaag cgctaacatc tgatcccgtc ctttttgcca
     7141 ggcgtttttc gtcaggctat agctgagcgt ccagttgata tcttcgaacg cagtatttaa
     7201 tccagcctag aattgctcat cgacattact cgttccccaa taagtttgat ggctaccact
     7261 caaatacagt gttgatgtgc gcccgagttg ctgagtaacg gtgagctgta atttcccgcg
     7321 tttgttataa gcgaggttgt aatagtcggt gaatttcggc ttaacctgaa taactccatc
     7381 ctgtgtttcg atgttgtagc cattcattcg actgtatgtt gtatcagcga aattaaaata
     7441 tccgctggtc gaataacggt aacccactaa ctgaatattc gtgcctgact cattgagcga
     7501 tttgttatag agaaaacgca ccgattgtcc gtcatgctga ctgtcatcgg gaagtgtgga
     7561 attagcctgc gtcatatcca cagacagagc gcccagtgcc cccatgtttt tcccgatacc
     7621 gaaattaaaa gcacgataac gatccgccag ttgcgttcca ccatatattg tccagccagc
     7681 cggaaggccg tggagtaatg tactttggaa aaagcggggt ttttcctgct gcgtatttcc
     7741 actacggtat tctcctgccg taatggaata acgagtatgc ccttcacgtt gcaaaagcgg
     7801 gactgacgaa tagggtacgg taaaaatctg cgtgctgccg tcagcctctt tgatcgttac
     7861 ctgcaagtca ccactattac ctgcggcata gatatcgttg atggtaaaag gccccggtgg
     7921 caccgtacta ttataaatgt catacccatt ttgtttaata gtgacctgtg cagtaccacg
     7981 agcaataccg tggatcaccg gggcaaatcc tctttggcta tcgggtaaca tattgtcatc
     8041 tgaggccaat tgtgcgccgc gaaagttaat accatcgaaa atatcgccct gggtataacc
     8101 atcacccagc gtcagccggg aacgtaacgg tattatgtct cgctcaagcc aggtattgat
     8161 atgctgccat ttatttttgc tacctgatga tctgtcgcta ctgttataac tccagctggt
     8221 attgtcgcgt aaacaccacg caccaatatt taacccactc tgtaggttta aatatgcata
     8281 atggctgtta ccccaaatcc gattctgtac actatttccg ctgaaattat aattgagcaa
     8341 tccggcatta ataccgggat cccataactc aggaggaata taaccacgcg cgcgattact
     8401 cataaatgcc tgagggatcg tcaggttcag tcgctgctga ccaacatcca gatgcgcagt
     8461 agcgtcatgg atcattgagg ttaatggcac gcgggcatca tctgccagca gattcatacc
     8521 ggagacagaa gccgcattca gccccatact ggcaagttgc gcgcgtgtca ggcagggaac
     8581 aatcccttgt tcactgtcgc ccgtattaaa tgtgacatca cgcgttgcca tataaccatt
     8641 attcaaatag atatcgacgc gatacgtccc tggcggtaat tcttgcccat tttcaaaacg
     8701 cgataaatcg gccacagcct ggggatcatc cgctaaaaag cgcggattaa aatagagttc
     8761 ggcagatgac aaaggtgcct gtgcggcaaa agcacaggcg acaacgagcc ggacaaaaaa
     8821 ccagccaaac gatgcttacg aatatgcaag cattgtgtgt ttcgctggta aagtcttaaa
     8881 ttcagatatg acattattcc tccggtttaa aattacccgg cagtcaattc tttttattca
     8941 ggcgagaaat tccccctgcg ttattccatt acgcccgtca ttttgggggt aagtgcgcca
     9001 taatcattta ttgttcggta agtaatattg cttcctgcat cagaaggcaa tttaaccgtg
     9061 ctttcgccca ttggaggcac caatgcattt tcaagaaccc gggttccggc attcaactct
     9121 gttaccgtca gataataggg tgtcgggtta atcagcgtca gagaattcgc gctacgacga
     9181 aatcttaatt tttctgcggc ctgatcgggt ggcaacgcta atttagccgg gcgatagtac
     9241 agtttaatgc ggctgataat tgcgagctgt ag
//
LOCUS       DAJVUN010000154         9227 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.154, whole genome shotgun sequence.
ACCESSION   DAJVUN010000154 DAJVUN010000000
VERSION     DAJVUN010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9227
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.154"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            331..483
                     /gene="hokE"
                     /locus_tag="OQQ76_003181"
     CDS             331..483
                     /gene="hokE"
                     /locus_tag="OQQ76_003181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308648.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokE"
                     /protein_id="HCS1969579.1"
                     /translation="MLTKYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVL
                     AYEPKK"
     gene            complement(605..1225)
                     /gene="entD"
                     /locus_tag="OQQ76_003182"
     CDS             complement(605..1225)
                     /gene="entD"
                     /locus_tag="OQQ76_003182"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415115.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin synthase subunit EntD"
                     /protein_id="HCS1969580.1"
                     /translation="MKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGR
                     KRKAEHLAGRIAAIYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGATALAVVSRQ
                     PIGVDIEEIFSAQTATELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEI
                     QTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIVITLCQHD"
     gene            complement(1395..3635)
                     /gene="fepA"
                     /locus_tag="OQQ76_003183"
     CDS             complement(1395..3635)
                     /gene="fepA"
                     /locus_tag="OQQ76_003183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore enterobactin receptor FepA"
                     /protein_id="HCS1969581.1"
                     /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN
                     LQAPGVSTITADEIRKNPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGIGPE
                     NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA
                     GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD
                     KTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS
                     RQGNLYAGDTQNTNSDAYTRSKYGDETNRLYRQNYSLTWNGGWDNGVTTSNWVQYEHT
                     RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN
                     QQRMKDLSSNTQALTGANTGGAIDGVSATDRSPYSKAEIFSLFAENNMELTDSTIVTP
                     GLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG
                     CYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG
                     QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII
                     PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS
                     ATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM
                     SVNTHF"
     gene            3878..5080
                     /gene="fes"
                     /locus_tag="OQQ76_003184"
     CDS             3878..5080
                     /gene="fes"
                     /locus_tag="OQQ76_003184"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin esterase"
                     /protein_id="HCS1969582.1"
                     /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS
                     PIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIF
                     SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGRGHAVSALEMPQAPLQPGWDCPQA
                     PEIPAKEIIWKSERLKNSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSL
                     THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTV
                     VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG
                     LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW
                     QPLFHDRS"
     gene            5083..5301
                     /gene="ybdZ"
                     /locus_tag="OQQ76_003185"
     CDS             5083..5301
                     /gene="ybdZ"
                     /locus_tag="OQQ76_003185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis protein YbdZ"
                     /protein_id="HCS1969583.1"
                     /translation="MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQ
                     SQESCQQWLEAHWRTLTPANFTQLQEAQ"
     gene            5298..9179
                     /gene="entF"
                     /locus_tag="OQQ76_003186"
     CDS             5298..9179
                     /gene="entF"
                     /locus_tag="OQQ76_003186"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin non-ribosomal peptide synthetase
                     EntF"
                     /protein_id="HCS1969584.1"
                     /translation="MSQHLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELTGEVDAPLL
                     ARAVVDGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQ
                     ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTW
                     LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGR
                     SASADILRLKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDYAAGFIFM
                     RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRD
                     SGRAAGDEPLFGPVLNIKVFDYQLDIPGVQAQTHTLATGPVNDLELALFPDEHGDLSI
                     EILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQINATQV
                     EIPETTLSALVAEQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSV
                     AVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRF
                     ADVPDLTNLCYNAPLKPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL
                     LWMQNHYLLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFF
                     AEYGVTTTHFVPSMLAAFVASLTPQTACQSCATLKQVFCSGEALPADLCREWQQLTSV
                     PLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGV
                     AGDLYLTGIQLAQGYLGRPDLTASRFIADPFVPGERMYRTGDVARWLDNGAVEYLGRS
                     DDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG
                     LPLDTSALQAQLRETLPPHMVPVVLLQLPLLPLSANGKLDRKALPLPELKAQAPGRAP
                     KAGSETIIAAAFASLLGCEVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVM
                     VASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYI
                     DPQWSIIGIQSPRPNGPMHTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQG
                     IAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS
                     TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAEL
                     DIYRQDCAHVDIISPGAFVKIGPIIRATLNR"
BASE COUNT         2004 a         2436 c         2545 g         2242 t
ORIGIN      
        1 cccgcatatc cggttgtcag gtcaggatgg taaggcacct actttacact ttcgcccgcg
       61 gtcagtgatg gctgcgggcg atttcgtttt aagagcaatg atgagttttg ccgacagaag
      121 tccgaaacag gatttactgt ataaataaac agctattttg ttgaggaagg gtaagataac
      181 ggcgggtgcc tgaagctttc cggtttcagg ttaactctga ggtctggaaa gatgaagccc
      241 caggagatat ttctatcaat cctggggctg ccactccgag cctcaacaac tcggatggta
      301 gtcccttctt cgcatggagg caatataaac atgctgacga aatatgccct tgtggcagtc
      361 atagtgctgt gtttgacggt actgggattt acgcttctgg tcggagactc gctgtgtgag
      421 ttcaccgtaa aggaacgtaa tattgagttt aaggctgttc tcgcttacga accgaagaag
      481 tagccgttgt gcggggagca atccccgcat atccggttgt caggtcagag tggtaaggca
      541 cctgctttac actttcgccc gcggtcagtg atggctgcgg gcgaatcgta ccagatgttg
      601 tcaattaatc gtgttggcac agagttatga ctattttttc ttttatctgc cagtgcacag
      661 caaacatctc attctcacga tgaatgatga cctgctgttt attccagcta attatctgat
      721 agtccagaaa acctgcatca gtttggatct cacttgcctt aaatgcgctc tctttggcgg
      781 aaaatgccag tgtcagcgcc agagaaaagg ctaaaccgca gtctgcgagt cgctcgtgtt
      841 ctgctggtgt aataatgttg tctgtcaatt cggtcgctgt ttgcgcagaa aaaatttctt
      901 cgatatcaac gccaatcggt tgacgggaaa ccacggccaa tgccgtagcc ccgcagtggc
      961 taatactgcc gtatacctcc gcaggccaca ccggttggcg tagctcgccg attgcgggca
     1021 cacatttata gccatattcc cgcagcgcat aaattgcagc gatccgcccg gctaaatgtt
     1081 cggctttgcg cttccgtcca gcgtgttgca gttgcgcgta atgcggcagc cagagtaaat
     1141 cctgctcaca aaaattcgcc ggatcgaact caacaaaatg cagcgtatgt ccggcaaagg
     1201 ggagggaggt atgcgtagtt ttcatgtcga ccatattaga gactgatgac aaacgctaaa
     1261 ctgcctgatg cgctacgctt atcaggccta catggtcctg caatatattg aattggcaag
     1321 atttttgtag gccggataag cgtagcgcat ccggcatgaa cgacgcgcac tttgtcaaca
     1381 atctgacgtt agcatcagaa gtgagtgttt acgctcatgt accacgtacg tcccggctcg
     1441 ttataggtat acgccccggc acccgcgata tagttggccc ctgccagatc gcccgtggtc
     1501 tgggcattac ccgcacgcca caaacgtttg tcgaacaggt tgtccacgcc gccggtcaga
     1561 ctgacattct tcgtcacatc ccaggtcgcg ctcagaccca caatgctgta aggactgatt
     1621 tctttggttt ccgggccaac cgctggctga cctttgtagt tgtatttttt cggctgctgc
     1681 ttaccgtacc aggtgaaggt cgtttgcatc gacaaatctt cccgcgcctg ccagctcagc
     1741 gttgagttca acgtgtactc cgggatgatc gacaaacggt cgcccgtggt tttgttttca
     1801 ctcttcagca tataagtgat gttattggtc cacatcaccg tttcgctaac tggtacgttt
     1861 aacgatcctt ccagaccttc aaccactgct ttcggcacgt tatcccactg atagagatcg
     1921 gtgccgactg cgttttgccc tacagccaca tagcccgctt caatcttatt gcgataatcg
     1981 ttacggaacc aggtgacgcc cgccagccag ccgtcgcgtt tgaactccag accaatctct
     2041 ttgttgatgc tggtttctgc tttcaggtca tcgttacctt gcagatagca gccgcccgcg
     2101 ctggcatagc agccctgacc tttactgtag agaatgtagt tcgggttagt ctggtacagg
     2161 ctcggcgctt tataggcgcg ggcaatgccc attttcagcg tgaagtcatc gcctaaacct
     2221 tgcgatatgt tcagcgccgg gctccagtta ttgccgacaa tactgtgatg atcgaaacgc
     2281 agccccggcg ttacgatggt gctgtcagtc agctccatgt tgttttcggc aaatagcgag
     2341 aaaatttctg cttttgaata cgggctacgg tcggtggcac tcacaccatc aatagcgccg
     2401 ccggtgttcg ccccggtcag cgcctgggta ttggaactca agtccttcat ccgttgctga
     2461 ttccactccg tacccagcgt cagcgtttgg ttaacgagga aatcaatcgg caggttaact
     2521 tcgctgtgca gcatcacgtc atcaagatcg atatcgacga aatcctgtgt cgctttttcg
     2581 ttaaatttcc cttcggtacc gcccgccaga ccttccggaa tacgcgagtt acgggtgtgt
     2641 tcatactgca cccagttgct ggtggtcact ccgttatccc agccaccgtt ccaggtcagc
     2701 gagtagttct ggcgatacag gcggttggtt tcatcgccat atttcgagcg agtgtaagcg
     2761 tcagagttgg tgttctgggt atcgcccgca tacaggttac cctggcggct gtaacccgct
     2821 tccagttcga gtgattgcag aggcgcgaag tcccagcgca ccacgccatt aatatctttg
     2881 ttgatcaccc cttcgcgccc ggctggtaac gtcgtggcat acgttccggc acgcgcggac
     2941 tgatggccct ggttgatatc ccacgcgtca gcctgggttt tgtcgaggtt gccatacaag
     3001 cggaagctga attcgtcgcc cagcgggccg gtcagactga agttggtgcg tttagtggca
     3061 ccttcctctt tatgttctgg cgcattgaaa taagcgtccc aggaaccgtg ccactcaccg
     3121 ctgccttttt tggtaatgat gttaactacg ccacccgccg cgccgttgcc ataacgcgct
     3181 gcagccggac cacgcagaac ttcaatacgt tcaatcattt caggcggcac ccaggaagta
     3241 tcaccacggg tatcgcgctc gccacgccag ccctgacgca ccgagttacg gctgctgacc
     3301 ggtttgccgt caattaaaat cagcgtgttt tccggaccta taccgcgaat atcaatctgt
     3361 cggttattcc cacgctgacc actggtggag ttaccggtca ggttaacgcc tggcatggta
     3421 cggatgatct ccgacacatc gcgggcaacc gggtttttgc ggatttcatc tgcggtgatg
     3481 gtcgaaacgc caggtgcctg caagttctgc tcggcggcgg taacgacaat ggtatcgtca
     3541 tgtgaaacag gagtatcggt cggctcttgt gcctgcgcta ccccataaat ccccagattg
     3601 accaacaagg ccagggaatg aatcttcttg ttcattgttt tattcctgca tttttgccac
     3661 gaattgcaac tgtcgggcat ggtcgtcctc aacacgacgc atcccgctac cgcgaaaacc
     3721 tttgatcctg aaagacacgc agtgcagttg gttaattaat gtccgcgctt cccacggcgc
     3781 gccattacgc tattgcaaat gcaaatagtt atcaataata ttatcaatat atttctgcaa
     3841 tcaatgaaaa attgcacagt aaacatgggg ttatggtgtg acggcgttaa aagtaggaag
     3901 tgagagctgg tggcagtcga aacatggccc ggaatggcag cgtctgaatg acgaaatgtt
     3961 tgaggtcact ttctggtggc gtgatcccca aggttctgaa gaatactcgc cgataaagcg
     4021 cgtatgggtc tacatcactg gtgtgaccga tcatcatcag aacagccagc cccagtcgat
     4081 gcagcgcatt gcaggtactg atgtctggca gtggacgaca caactcaatg ccaactggcg
     4141 cggcagctac tgctttattc ccaccgaacg cgatgacatt ttttctgcac catcccccga
     4201 tcgcctcgaa ttacgtgaag gctggcgaaa actattaccc caggcaatag ccgatccgct
     4261 gaatccacaa agctggaaag gcgggcgagg gcacgctgtt tctgcactcg aaatgccgca
     4321 agcgcctctg caaccgggat gggattgtcc gcaagcgcca gaaataccag ccaaagaaat
     4381 tatctggaaa agtgaacggt tgaaaaattc acgtcgtgta tggattttta ccaccggcga
     4441 tgcaacagca gaagaacgcc cgctggcagt tttgctcgat ggcgaatttt gggcgcaaag
     4501 tatgcccgtc tggccagtgc tgacttcgct gacccatcgt cagcaacttc ctcccgccgt
     4561 gtatgtgttg atcgacgcta tcgacaccac gcaccgcgct cacgaactgc cgtgtaatgc
     4621 ggatttctgg ctcgcagtac agcaagagtt attacccctg gtgaaagcta ttgccccttt
     4681 tagcgatcgc gccgatcgca ccgtggttgc cgggcagagt tttggtggac tttccgcgct
     4741 gtatgccgga ctgcactggc ctgaacgttt tggttgtgta ttaagccagt caggatcgta
     4801 ctggtggccg catcggggcg ggcagcaaga gggcgtgtta cttgaaaagc ttaaagctgg
     4861 tgaagttagc gccgaaggtc tgcgcattgt gctggaagcg ggtattcgcg agccgatgat
     4921 tatgcgggcc aatcaggcgc tgtatgcgca attacacccc ataaaagaat ccattttctg
     4981 gcgtcaggtt gacggcggac atgatgcgct ttgttggcgc ggtggcttga tgcaggggct
     5041 aatcgacctc tggcaaccac ttttccatga caggagttga atatggcatt cagtaatccc
     5101 ttcgatgatc cacagggagc gttttacatt ttgcgcaatg cgcaggggca attcagtctg
     5161 tggccgcaac aatgcgcctt accggcaggc tgggacattg tgtgtcagcc gcagtcacaa
     5221 gagtcctgcc agcagtggct tgaagcccac tggcgtactc tgacaccggc gaatttcacc
     5281 cagttgcagg aggcgcaatg agccagcatt tacctttggt cgccgcacag cccggcatct
     5341 ggatggcaga aaaactgtcg gatttaccct ccgcctggag cgtagcgcat tacgttgagt
     5401 taaccggaga ggttgatgcg ccattactgg cccgcgcggt ggttgacgga ctagcgcaag
     5461 cagatacgct gcggatgcgt tttacggaag ataacggcga agtctggcag tgggtcgatg
     5521 atgcgctgac gttcgaactg ccagaaatta tcgacctgcg aaccaacatt gatccgcacg
     5581 gtactgcgca ggcattaatg caggcggatt tgcaacaaga tctgcgcgtc gatagcggta
     5641 aaccactggt ctttcatcag ctgatacagg tggcggataa ccgctggtac tggtatcagc
     5701 gttatcacca tttgctggtc gatggcttca gtttcccggc cattacccgc cagatcgcca
     5761 atatttactg cacatggctg cgtggcgaac caacgcctgc ttcgccgttt acgcctttcg
     5821 ctgatgtagt ggaagagtac cagcaatacc gcgaaagcga agcctggcag cgtgatgcgg
     5881 cattctgggc agaacagcgt cgtcaactgc cgccgcccgc gtcactttct ccggcacctt
     5941 taccggggcg cagcgcttcg gcagatattt tacgtctgaa aatggaattt accgacgggg
     6001 aattccgcca gttggctacg caactttcag gtgtgcagcg taccgattta gcccttgcgc
     6061 tgacggcttt gtggctgggg cgattgtgca atcgcatgga ctacgccgct ggatttatct
     6121 ttatgcgtcg actgggctcg gcggcgctga cggctaccgg acccgtgctc aacgttttgc
     6181 cgttgggtat tcacattgcg gcgcaagaaa cgctgccgga actggcaacc cgactggcag
     6241 cacaactgaa aaaaatgcgt cgtcatcaac gttacgatgc cgaacaaatt gtccgtgaca
     6301 gcgggcgagc ggcaggtgat gaaccgctgt ttggtccggt actcaatatc aaggtatttg
     6361 attaccaact ggatattcct ggtgttcagg cgcaaaccca taccttggca accggtccgg
     6421 ttaatgacct tgaactggcc ctgttcccgg atgaacacgg tgatttgagt attgagatcc
     6481 tcgccaataa acagcgttac gatgagccaa cgttaatcca gcatgctgaa cgcctgaaaa
     6541 tgctgattgc ccagttcgcc gcggatccgg cgctgttgtg cggcgatgtc gatattatgc
     6601 tgccaggtga gtatgcgcag ctggcgcaga tcaacgccac tcaggttgag attccagaaa
     6661 ccacgctgag cgcgctggtg gcagaacaag cggcaaaaac accggatgct ccggcgctgg
     6721 cagatgcgcg ttaccagttc agctatcggg aaatgcgcga gcaggtggtg gcgctggcga
     6781 atctgctgcg tgagcgtggc gttaaaccgg gcgacagcgt ggcggtggcg ctaccgcgct
     6841 cggtcttttt gaccctggcg ctacatgcga tagttgaagc tggcgcggcc tggctaccgc
     6901 tggataccgg ctatccggac gatcgcctga aaatgatgct ggaagatgcg cgtccgtcgc
     6961 tgttaatcac caccgacgat caactgccgc gctttgccga tgttccagat ttaaccaacc
     7021 tttgctataa cgccccgctt aaaccgcagg gcagtgcgcc gctgcaactt tcacaaccgc
     7081 atcacacggc ttatatcatc tttacctctg gctccaccgg caggccgaaa ggggtaatgg
     7141 tcgggcagac ggctatcgtt aaccgcctgt tgtggatgca aaatcattat ctgcttacag
     7201 gcgaagatgt cgttgcccaa aaaacgccgt gcagttttga tgtctcggtg tgggagtttt
     7261 tctggccgtt tattgccggg gctaaactgg tgatggctga accggaagcg caccgcgacc
     7321 cgctcgctat gcagcaattc tttgccgaat atggcgtaac gaccacgcac tttgtgccgt
     7381 cgatgctggc agcatttgtt gcatcgctga cgccgcaaac cgcttgccag agttgcgcga
     7441 cgttgaaaca ggttttctgt agtggtgagg ccttaccggc tgatttatgc cgcgaatggc
     7501 aacagttaac cagcgtgccg ttgcataatc tatatggccc gacggaagcg gcggtagatg
     7561 tcagctggta tccggctttt ggcgaggaac tggcacaggt gcgcggcagc agtgtgccga
     7621 ttggttatcc ggtatggaat acgggtctgc gtattcttga tgcgatgatg catccggtgc
     7681 cgccgggtgt ggcgggtgat ctctatctca ccggcattca actggcgcag gggtatcttg
     7741 gacggcccga tctgaccgcc agccgcttta ttgccgatcc ttttgtccct ggtgaacgga
     7801 tgtaccgtac cggagacgtt gcccgctggc tggataacgg cgcggtggag tacctcgggc
     7861 gcagtgacga tcagctaaaa attcgcgggc agcgtattga actgggcgaa atcgatcgcg
     7921 tgatgcaggc gctgccggat gtcgaacaag ccgttaccca cgcctgtgtg attaaccagg
     7981 cggcagccac cggtggtgat gcgcgtcagt tggtgggcta tctggtgtcg caatcaggtc
     8041 tgccgttgga taccagcgca ttacaggcgc agcttcgcga aacattgcca ccacatatgg
     8101 tgcccgtggt tctgctgcaa cttccactgt tacctcttag cgccaacggc aagctggatc
     8161 gcaaagcctt accgttgcct gaactgaagg cacaagcgcc ggggcgtgcg ccaaaagcgg
     8221 gcagtgaaac gattattgcc gcggcattcg cgtcgttgct gggttgtgag gtgcaggatg
     8281 ccgatgctga tttctttgcg cttggcggtc attcgctact ggcaatgaaa ctggcagcgc
     8341 agttaagtcg gcaggttgcc cgccaggtga cgccggggca agtgatggtc gcgtcaaccg
     8401 tcgctaaact ggcaacgatt attgatgctg aagaagacag cacccggcgt atgggattcg
     8461 aaaccattct gccgttgcgt gaaggtaatg gcccgacgct gttttgtttc catccggcat
     8521 ccggttttgc ctggcagttt agcgtgctct cgcgttatat cgatccacaa tggtcgatta
     8581 tcggcattca gtcgccgcgc cccaatggcc ccatgcatac cgcggcaaat ctggatgaag
     8641 tctgtgaagc gcatctggca acgttacttg aacaacaacc gcacggccct tattacctgc
     8701 tggggtattc ccttggcggt acgctggcgc agggcattgc ggcgcgactg cgtgcccgtg
     8761 gcgaacaggt ggcatttctt ggtttgctgg atacctggcc gccagaaacg caaaactggc
     8821 aggaaaaaga ggctaatggt ctggacccgg aagtgctggc ggagattaac cgcgaacgcg
     8881 aggccttcct ggcggcacag cagggaagta cttcaacgga gttgtttacc accattgaag
     8941 gcaactacgc tgatgctgtg cgtctgctga cgactgctca tagcgtaccg tttgatggta
     9001 aagcgacgct gtttgttgct gaacgcacgc ttcaggaagg tatgagcccc gaacgcgctt
     9061 ggtcgccctg gattgccgag ctggatatct atcgtcagga ttgtgcgcat gtggatatta
     9121 tctctccagg ggcgtttgta aaaattgggc cgattattcg cgcaacgcta aacaggtaaa
     9181 ttaatattat ctataaaccc ataattacag aaaataatta tgggttt
//
LOCUS       DAJVUN010000155         9162 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.155, whole genome shotgun sequence.
ACCESSION   DAJVUN010000155 DAJVUN010000000
VERSION     DAJVUN010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9162
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.155"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            176..1150
                     /gene="cysB"
                     /locus_tag="OQQ76_003187"
     CDS             176..1150
                     /gene="cysB"
                     /locus_tag="OQQ76_003187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HCS1969585.1"
                     /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL
                     GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT
                     QARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM
                     LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP
                     RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRR
                     STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK"
     gene            1445..1609
                     /locus_tag="OQQ76_003188"
     CDS             1445..1609
                     /locus_tag="OQQ76_003188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmiA family putative membrane protein"
                     /protein_id="HCS1969586.1"
                     /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV
                     VALLIWKVWG"
     gene            1612..1779
                     /locus_tag="OQQ76_003189"
     CDS             1612..1779
                     /locus_tag="OQQ76_003189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969587.1"
                     /translation="MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFI
                     ELFAEDDQPKQ"
     gene            1869..1949
                     /locus_tag="OQQ76_003190"
     CDS             1869..1949
                     /locus_tag="OQQ76_003190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014832221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969588.1"
                     /translation="MKYWSWMGAFSLSMLFWAELLWIITH"
     gene            2113..4634
                     /locus_tag="OQQ76_003191"
                     /pseudo
     CDS             2113..4634
                     /locus_tag="OQQ76_003191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415792.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
     gene            complement(4698..5288)
                     /gene="ribA"
                     /locus_tag="OQQ76_003192"
     CDS             complement(4698..5288)
                     /gene="ribA"
                     /locus_tag="OQQ76_003192"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HCS1969589.1"
                     /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT
                     PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI
                     RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE
                     AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK"
     gene            5458..6222
                     /gene="pgpB"
                     /locus_tag="OQQ76_003193"
     CDS             5458..6222
                     /gene="pgpB"
                     /locus_tag="OQQ76_003193"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase B"
                     /protein_id="HCS1969590.1"
                     /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV
                     TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE
                     PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP
                     SGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLI
                     SWALVAVATWLAQRICGPLTPPAEENREIAQREQES"
     gene            6371..6679
                     /gene="lapA"
                     /locus_tag="OQQ76_003194"
     CDS             6371..6679
                     /gene="lapA"
                     /locus_tag="OQQ76_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA"
                     /protein_id="HCS1969591.1"
                     /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL
                     LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE
                     "
     gene            6686..7855
                     /gene="lapB"
                     /locus_tag="OQQ76_003195"
     CDS             6686..7855
                     /gene="lapB"
                     /locus_tag="OQQ76_003195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HCS1969592.1"
                     /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN
                     FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT
                     YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
                     IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSI
                     MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV
                     EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA
                     KESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL"
     gene            8048..8785
                     /gene="pyrF"
                     /locus_tag="OQQ76_003196"
     CDS             8048..8785
                     /gene="pyrF"
                     /locus_tag="OQQ76_003196"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HCS1969593.1"
                     /translation="MTLTASSSSRAVTNSPVVVALDYHNRDDALSFVDKIDPRDCRLK
                     VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG
                     GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLADLGVTLSPADYAERLAALTQK
                     CGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSDAGDQRRIMTPEQALAAGVDYM
                     AIGRPVTQSVDPAQTLKAINASLQRSA"
     gene            8785..9111
                     /gene="yciH"
                     /locus_tag="OQQ76_003197"
     CDS             8785..9111
                     /gene="yciH"
                     /locus_tag="OQQ76_003197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415798.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HCS1969594.1"
                     /translation="MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKG
                     KGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK
                     VKLAGG"
BASE COUNT         2266 a         2138 c         2396 g         2362 t
ORIGIN      
        1 tcgcgaaagc ggcccttttt tattgcatat tattttttct tcacacctat acactaaggc
       61 tataaatgat atagtggtta tagttagcac cttttttatt attaaatcgt attagtcacc
      121 cgccaggtgt gacgaaaaaa cgatgttctg atggcgtcta agtggatggt ttaacatgaa
      181 attacaacaa cttcgctata ttgttgaggt ggtcaatcat aacctgaatg tctcatcaac
      241 agcggaagga ctttacacat cacaacccgg gatcagtaaa caagtcagaa tgctggaaga
      301 cgagctaggc attcaaattt tttcccgaag cggcaagcac ctgacgcagg taacgccagc
      361 agggcaagaa ataattcgta tcgctcgcga agtcctgtcg aaagtcgatg ccataaaatc
      421 ggttgccgga gagcacacct ggccggataa aggctcactg tatatcgcca ccacgcatac
      481 ccaggcacgc tacgcattac caaacgtcat caaaggcttt attgagcgtt atcctcgcgt
      541 ttctttgcat atgcaccagg gctcgccgac acaaattgct gatgccgtct ctaaaggcaa
      601 tgccgatttc gctatcgcca cagaagcgct gcatctgtat gaagatttag tgatgttacc
      661 gtgctaccac tggaatcggg ctattgtagt cactccggat cacccgctgg caggcaaaaa
      721 agccattacc attgaagaac tggcgcaata tccgttggtg acatatacct tcggctttac
      781 cggacgttca gaactggata ctgcctttaa ccgcgcaggg ttaacgccgc gtatcgtttt
      841 cacggcaacg gatgctgacg tcattaaaac ttacgtccgg ttagggctgg gggtaggggt
      901 cattgccagc atggcggtgg atccggtcgc cgatccggac cttgtgcgcg ttgatgctca
      961 cgatatcttc agccacagta caaccaaaat tggttttcgc cgtagtactt ttttgcgcag
     1021 ttatatgtat gatttcattc agcgttttgc accgcattta acgcgtgatg tcgttgatgc
     1081 ggctgtcgca ttgcgctcta atgaagaaat tgaggtcatg tttaaagata taaaactgcc
     1141 ggaaaaataa tttcttgcgt tattttcggc accttttatg tagcgaaggt gccggaatat
     1201 attctctttt gttacttatt tctataccgt gcacaatatt tttatccctc atatttatag
     1261 ggtaaattac ctgtaaagta gtgtctaatt acccgcctcg caaattccag ttttcaaata
     1321 tctatttcag gtcaaaagat tgaattattc actggagacg attcgtaaat tcgctggatt
     1381 tttgactaaa gtttctttag gatttgtctc atcgtatgat taattacacc aatcgttcaa
     1441 cgtcttgctg ataagtgatg gcgattatat gaggttagca atgccttctg gaaatcagga
     1501 accccgccgc gatcctgaat taaaacgtaa agcctggctg gcggtttttc ttggttctgc
     1561 acttttctgg gtggttgtcg cactgctgat ttggaaagtg tggggataac tatggtcggt
     1621 caggagcaac tggagtcgtc accattatgc cagcatagtg acaatgaaac agaaacgaaa
     1681 cgggaatgtt ccgtcgttat tccagacgac tggcaactaa catcgcagca gcaagccttt
     1741 atagaactgt ttgctgaaga tgatcagccg aaacaataat tatcatcatt cttattaccc
     1801 atttttaatg aattaaaggg cttttaatac accgcagcaa taacagcttg agttatctca
     1861 acacaaatat gaaatattgg tcctggatgg gcgcgttttc tctgtcgatg ctcttctggg
     1921 ccgaactcct ctggatcatt actcactgat ccttgacccc gctgcggcgg ggttgtcatt
     1981 tgctttgcca caaggtttct cctcttttat caatttgggt tgttatcaaa tcgttacgcg
     2041 atgtttgtgt tatctttaat attcactctg aagagaatca gggcttcgca accctgtcat
     2101 taaggaggag ctatgtcgtc aaccctacga gaagccagta aggacacgtt gcaggccaaa
     2161 gataaaactt accactacta cagcctgccg cttgctgcta aatcactggg cgatatcacc
     2221 cgtctaccca agtcactcaa agttttgctc gaaaacctgc tgcgctggca ggatggtaac
     2281 tcggttaccg aagaggatat ccacgcgctg gcaggatggc tgaaaaatgc ccatgctgac
     2341 cgtgaaattg cctaccgccc ggcaagggtg ctgatgcagg actttaccgg cgtacctgcc
     2401 gttgttgatc tggcggcaat gcgcgaagcg gttaaacgcc tcggcggcga tactgcaaag
     2461 gttaacccgc tctcaccggt cgacctggtc attgaccact cagtgaccgt cgatcgtttt
     2521 ggtgatgatg aggcatttga agaaaacgta cgcctggaaa tggagcgcaa ccacgaacgt
     2581 tatgtgttcc tgaaatgggg aaagcaagcg ttcagtcggt ttagcgtcgt gccgccaggc
     2641 acaggcattt gccatcaggt taacctcgaa tatctcggca aagcagtgtg gagtgaattg
     2701 caggacggtg aatggattgc ttatccggat acactcgttg gtactgactc gcacaccact
     2761 atgatcaacg gccttggcgt gctggggtgg ggcgtgggtg ggatcgaagc agaagccgca
     2821 atgttaggcc agccggtttc catgcttatc ccggacgtag tgggctttaa acttaccggt
     2881 aaattacgtg aaggtattac cgccacagac ctggttctca ctgttaccca aatgctgcgc
     2941 aaacatggcg tggtggggaa attcgtcgaa ttttatggtg atggtctgga ttcactaccg
     3001 ctggcggatc gcgccaccat tgccaatatg tcgccagaat atggtgccac ctgtggcttc
     3061 ttcccaatcg atgctgtaac cctcgattac atgcgtttaa gcgggcgcag cgaagatcag
     3121 gttgagttgg tcgaaaaata tgccaaagcg cagggcatgt ggcgcaaccc gggcgatgaa
     3181 ccgattttta ccagtacgtt agaactggat atgaatgacg ttgaagcgag cctggcaggg
     3241 ccaaaacgcc cacaggatcg cgttgcactg cccgatgtac caaaagcatt tgccgccagt
     3301 aacgaactgg aagtgaatgc cacgcataaa gatcgccagc cggtcgatta tgttatgaac
     3361 ggacatcagt atcagttacc tgatggcgct gtggtcattg ctgcgataac ctcgtgcacc
     3421 aacacctcta acccaagtgt gctgatggcc gcaggcttgc tggcgaaaaa agccgtaact
     3481 ctgggccgct gcccgatcct atcgaaacgg caatcaaaaa aggcgattta accgtcggtg
     3541 cggtgctgtc cggcaaccgt aactttgaag gccgtatcca tccgctggtt aaaactaact
     3601 ggctggcctc gccgccgctg gtggttgcct atgcgctggc gggaaatatg aatatcaacc
     3661 tggctgctga gcctattggt catgatcgta aaggcgaccc ggtttatctg aaagatatct
     3721 ggccatcggc acaagaaatt gcccgtgcgg tagaacaagt ctccacagaa atgttccgta
     3781 aagagtacgc agaagttttt gaaggcacag cagagtggaa ggaaattaac gtcacacgat
     3841 ccgataccta cggttggcag gaggattcaa cctatattcg cttatcgcct ttctttgatg
     3901 aaatgcaggc aacaccagca cctgtggaag atattcacgg tgcgcggatc ctcgcaatgc
     3961 tgggggattc agtcaccact gaccatatct ctccggcggg cagtattaag cccgacagcc
     4021 cggcgggtcg atatctacaa ggtcggggtg ttgagcgaaa agactttaac tcctacggtt
     4081 cgcggcgtgg taaccatgaa gtgatgatgc gcggcacctt cgccaatatt cgcatccgta
     4141 atgaaatggt gcctggcgtt gaagggggga tgacgcggca tttacctgac agcgatgttg
     4201 tctctatcta tgatgccgcg atgcgctata agcaggagca aacgccgctg gcggtgattg
     4261 ccgggaaaga gtatggatca ggctccagcc gtgactggac ggcaaaaggt ccgcgtctgc
     4321 ttggtattcg tgtggtgatt gccgaatcgt ttgaacgaat tcaccgttcg aatttaattg
     4381 gcatgggcat cttgccgctg gaatttccgc aaggcgtgac gcgtaaaacg ttagggctaa
     4441 ccggggaaga gaagattgat attggcgacc tgcaaaatct acaacccggc gcgacggttc
     4501 cggtgacgct tacgcgcgcg gatggtagcc aggaagtcgt accctgccgt tgtcgtatcg
     4561 acaccgcgac ggagttgacc tactaccaga acgacggcat tttgcattat gtcattcgta
     4621 atatgctgaa gtaacaagta tttgcttgcc ggttattttg cttccggcaa gcaaattaat
     4681 tccacaatgc gagagggtta tttgttcagc aaatgaccca ttttctcggc tttggtatcg
     4741 agataatgtt cgttattggg gttacgacct acaatcaatg gtacgcgttc aacaatatta
     4801 atccctgctt cggtcagaat ttcgactttt ttcgggttat tggttaacaa gcggacttca
     4861 ttgacgccaa ggagtttgaa catatcagcg caaagagtga agtcgcgctc atcagcggcg
     4921 aagcctaact ggtggttagc ctctacggta tcgtaacctt gatcctgcag tgcgtaagcg
     4981 cggattttat tcagcagacc aatgttacga ccttcctgac ggtgatacag caaaatacca
     5041 cggccttcct cggcaatttg cgtcaatgcc gcttcgagct ggaagccaca atcgcagcgc
     5101 aagctgaaca gggcgtcacc ggtcagacat tcggaatgga cgcgcgcaag taccggggta
     5161 tgcccggaaa tatcgccata gactagcgcg acatgatcgt gtccggttgc cagttcttca
     5221 aatcccacca tcaggaaatc gccccatggg gttggcagtt tggcttctgc cacacgttta
     5281 agctgcatga aattctccag ataatgctgg ttctgtattg gcttattttg ccataacgag
     5341 aaggggttca cctaatcacg acgcgtcgat cgttcacgga atggcacaaa tctgtcaatt
     5401 tttcctggaa ctggcgtttt cagttatgat tgtgggactt atcaaaaagg agaggccatg
     5461 cgttcgattg ccagacgtac cgcagtggga gctgcactat tgcttgtcat gccagtagcc
     5521 gtatggattt ctggctggcg ttggcaacct ggagaacaaa gttggctact aaaagcggct
     5581 ttttgggtta ctgaaactgt cacccagccc tggggcgtca ttacacattt gattttattc
     5641 ggctggtttc tctggtgtct gcgttttcgc attaaggctg cctttgtatt atttgccatt
     5701 ctggcggccg caatccttgt gggacaaggc gttaaatcct ggatcaaaga caaagtccag
     5761 gaaccacgac cttttgttat ctggctggaa aaaacacatc atattccggt tgatgagttc
     5821 tacactttaa agcgagcaga acgcggaaat ctagtgaaag aacagttggc tgaagagaaa
     5881 aatatcccac aatatttgcg ttcacactgg cagaaagaga cggggtttgc ctttccttcc
     5941 ggtcacacga tgtttgctgc cagttgggca ctgctggccg ttggtttgct gtggccgcgt
     6001 cggcgaacgt taaccattgc tatcttgctg gtctgggcaa cgggagtcat gggaagccgc
     6061 ctgctgctcg ggatgcattg gccacgcgat ctggtagtag ctacgttgat ttcgtgggcg
     6121 ctggtggcgg tggcaacgtg gcttgcgcaa cgaatttgtg ggccattaac accacctgcg
     6181 gaagaaaatc gcgaaatagc gcaacgagaa caagaaagtt aacgctggtt gattttccga
     6241 atttagccct taaatcatca acaatgcgcg tggatgccat ttcgcagacg gcgcgaaaat
     6301 ggtactttaa agggctattg cggtaagttg accataattt attcgctcta accacataac
     6361 gggaagtaat gtgaaatatt tactcatttt cttactggtg ttagcgatct tcgtgatttc
     6421 ggtcacgttg ggtgcgcaga acgatcaaca ggtgacgttt aattatctgt tagcgcaagg
     6481 ggagtaccgt atttccacat tgctggcggt attgtttgct gcggggtttg ctatcggttg
     6541 gttgatttgt ggcctgttct ggctgcgagt tcgtgtttcc ctggcgcgcg ctgaacgtaa
     6601 aataaagcga ctggaaaacc agctttcacc cgcgactgac gtggctgtag tgccgcactc
     6661 gtcagcggcg aaggaataac tttctatgct ggagttgttg tttctgcttt tgcctgtagc
     6721 cgctgcctat ggctggtata tgggccgcag aagtgcgcaa caaaacaagc aagatgaagc
     6781 caaccgcttg tcgcgtgatt acgtagcggg ggttaacttc ctgcttagta atcaacagga
     6841 taaagcggta gacctgtttc tcgatatgct taaagaggat acaggcaccg ttgaagccca
     6901 ccttacgctc ggaaacctgt tccgttcgcg tggcgaagtt gatcgcgcta ttcgcatcca
     6961 tcagacccta atggaaagcg cctcgctgac ctatgaacag cgtctgttgg cgattcaaca
     7021 actagggcgt gattacatgg ccgccgggtt atacgaccgc gcggaagaca tgttcaatca
     7081 gctgaccgat gaaactgact tccgcattgg cgctctgcaa cagttgctac aaatctacca
     7141 ggctaccagt gagtggcaga aagcaattga tgttgccgaa cgcctggtga agctgggtaa
     7201 agataaacag cgcgtcgaaa ttgcccattt ctactgtgag ttagccctgc agcatatggc
     7261 cagcgacgat ctcgatcgtg ccatgacctt gctaaaaaaa ggggcggcgg cagataaaaa
     7321 cagcgcccgc gtatccatca tgatgggacg cgtgtttatg gcgaaaggag aatacgccaa
     7381 agccgtcgaa agtttgcaac gcgtgatatc ccaggacaga gaactggtca gcgaaacgct
     7441 ggaaatgttg caaacctgct atcagcagtt gggtaaaact gccgaatggg cagaattcct
     7501 gcaacgcgcg gtggaagaga acaccggtgc cgatgctgaa ttgatgcttg ctgatatcat
     7561 cgaagcgcgc gacggtagtg aggccgcaca ggtctatatt acgcgccagc ttcagcgtca
     7621 tccgaccatg cgtgtgttcc ataagttaat ggattaccac ttaaatgaag cggaagaagg
     7681 gcgtgccaaa gagagcctga tggtgctgcg tgacatggtt ggcgaaaagg tacgtagtaa
     7741 gcctcgttat cgctgccaga aatgtggttt taccgcatac accctctact ggcattgtcc
     7801 gtcttgtcgg gcctggtcaa ccattaaacc gattcgcggt cttgatggcc tgtaattttt
     7861 aaaaaaatcc gactttagtt acaacatact agttattgat gttccattgt gctccggcaa
     7921 cgacggagca gaaaaagcct gccaggggaa aaatcgcaac tgttaatttt ttatttccac
     7981 gggtagaatg ctcgccgttt acctgtttcg cgccacttcc ggtgcccatc atcaagaagg
     8041 tctggtcatg acgttaactg cttcatcttc ttcccgcgct gttacgaatt ctcctgtggt
     8101 tgttgccctt gattatcata atcgtgatga cgcgctgtcc tttgtcgaca agatcgaccc
     8161 acgcgattgt cgtctgaagg tcggcaaaga gatgtttaca ttgtttgggc cacagtttgt
     8221 gcgcgaactt caacagcgtg gttttgatat ctttcttgac ctgaaattcc acgatattcc
     8281 taacactgca gcgcacgctg tcgctgctgc agctgactta ggcgtgtgga tggtgaatgt
     8341 tcatgcctct ggtggggcgc gtatgatgac cgcagcgcgt gaggcactgg ttccgtttgg
     8401 caaagatgca ccgcttttga ttgctgtaac agtgttgacc agcatggaag ctagcgacct
     8461 ggccgatctt ggcgtgacac tgtcacctgc agattatgca gaacgtctgg cggcactgac
     8521 gcaaaaatgt ggccttgatg gtgtggtgtg ttctgctcag gaagctgtgc gctttaaaca
     8581 ggtattcggt caggagttca aactggttac accgggcatt cgtccgcagg ggagtgatgc
     8641 tggtgaccag cgccgcatta tgacgccaga acaggcgttg gcggctggtg ttgattatat
     8701 ggcgattggt cgcccggtaa cgcaatcggt agatccagcg caaacactga aagcgatcaa
     8761 cgcctcttta cagcggagtg catgatgagt gattccaaca gccgtctggt ctactcaacg
     8821 gaaaccggac gtattgatga gccaaaagcg gccccagtac gccctaaagg cgatggtgtg
     8881 gtgcgtattc agcgtcagac cagtggacgt aaaggtaagg gcgtttgcct gattaccggt
     8941 atcgatctcg atgatgccga actgacaaaa cttgcagcgg aactgaagaa aaaatgcggc
     9001 tgcggcggag cagttaaaga tggagttatt gaaatccagg gcgataagcg tgatttatta
     9061 aaatcactac ttgaagcgaa agggatgaag gtaaaactcg caggcggtta acataaaaag
     9121 ccacggatat atccgtggct ttcgaatatt ttactgtgtg ta
//
LOCUS       DAJVUN010000156         9131 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.156, whole genome shotgun sequence.
ACCESSION   DAJVUN010000156 DAJVUN010000000
VERSION     DAJVUN010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9131
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.156"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..886)
                     /locus_tag="OQQ76_003198"
                     /pseudo
     CDS             complement(1..886)
                     /locus_tag="OQQ76_003198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            complement(887..973)
                     /locus_tag="OQQ76_003199"
                     /pseudo
     CDS             complement(887..973)
                     /locus_tag="OQQ76_003199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(1067..2542)
                     /locus_tag="OQQ76_003200"
     CDS             complement(1067..2542)
                     /locus_tag="OQQ76_003200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HCS1969595.1"
                     /translation="MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLF
                     MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNA
                     VIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVS
                     IFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYN
                     ADYSLYVVDYCPDNHTATRGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLA
                     SLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLT
                     NIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQ
                     QSIRPDDILARLEGEVFGLLFTELNSAQAKIIADRIRKNVELLTGFSNRYDVPEQMTI
                     TIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI"
     gene            complement(2689..3972)
                     /locus_tag="OQQ76_003201"
     CDS             complement(2689..3972)
                     /locus_tag="OQQ76_003201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HCS1969596.1"
                     /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAMNKRSVT
                     DVDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQ
                     GQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGV
                     PANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAE
                     LRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILL
                     YLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNP
                     AQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHL
                     QSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKD"
     gene            complement(4085..6018)
                     /gene="yeaG"
                     /locus_tag="OQQ76_003202"
                     /pseudo
     CDS             complement(4085..6018)
                     /gene="yeaG"
                     /locus_tag="OQQ76_003202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310519.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YeaG"
     gene            6454..7200
                     /gene="mipA"
                     /locus_tag="OQQ76_003203"
     CDS             6454..7200
                     /gene="mipA"
                     /locus_tag="OQQ76_003203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="scaffolding protein MipA"
                     /protein_id="HCS1969597.1"
                     /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT
                     DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL
                     DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTSGI
                     GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR
                     YTRLSDEVTDSPMVDKSWTGLISTGITYKF"
     gene            7290..8144
                     /gene="yeaE"
                     /locus_tag="OQQ76_003204"
     CDS             7290..8144
                     /gene="yeaE"
                     /locus_tag="OQQ76_003204"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal reductase YeaE"
                     /protein_id="HCS1969598.1"
                     /translation="MQQKMIQFSGDVSLPAIGQGTWYMGEDASQRKTEVAALRAGIEL
                     GLTLIDTAEMYADGGAEKVVGEALTGLRDNVFLVSKVYPWNAGRQKAINACEASLCRL
                     NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQ
                     CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHA
                     HNISSAQVLLARVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELTMLDKAYPAPK
                     GKTALDMV"
     gene            complement(8195..9079)
                     /locus_tag="OQQ76_003205"
     CDS             complement(8195..9079)
                     /locus_tag="OQQ76_003205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707334.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HCS1969599.1"
                     /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG
                     AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP
                     WTLKSHHEDADGVALTFELTQSEETKKFCPHDFTLLAHFRVGKTCEIDLESHGEFETT
                     SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKEDVLTDGIQTFPDRTDRVYLNPQDCS
                     VINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQK
                     VTKEKPAHLAQSIRVAKR"
BASE COUNT         2421 a         2113 c         2192 g         2405 t
ORIGIN      
        1 cgcccggtaa gtcatggacg taactgacat actggaacag attatcttcg ctctggttga
       61 tgataatgtc gcgccccgaa tcggtatcgg ttagcgtgac attgagaaaa cgccagagga
      121 gagggcggtc atgagtgtaa aagatattcc gcaaattgtt tttgttaata tccagcagca
      181 caatcccttt tagctgccct gcaacataca ccggcgtcag caaactcatc acgttctgtt
      241 tagtacgctg atcctggtaa atgctcgaca atacggtacg cccggtaaat accttttcaa
      301 tatctttgcg atcgatacca atacttcctg actgcaggaa ggaccagtta ttcatcgcaa
      361 agtattcaac attaaccggc tcataaaaat agacatagcg gtcattgaga tcgagataat
      421 agtgaaattt ctcttcggcc atcccaagac ctgaaccgta atcatcctag tggcggttgc
      481 cttccactgc ctgatcaaaa gcgggtaata gtgctgcagc ttccacaatt gtgtcgcagt
      541 cagtggatgc ggtttgtagt gtgccgcgta agcccgggta tttatgagca gtcaggttta
      601 agccatgggt attattggca gactcaaaag cctcgcagat ggcgcgccgc tgttctggcg
      661 acacttccga cagctcagca gcgagagcgc gcatcacatg cgcggcaata ctctgattct
      721 gatacttatc ataaagaaag gaggagtctg ctttctgcac gatatagcgc agataggcac
      781 tcattgctct gtcgctggcg acaagttcaa aaataaggaa ggaagatgtc agcacaatga
      841 cacttgcggc gataaaatgc cggagcattc tatggtgcaa tttcatgata aatggcactc
      901 cttcggttag tgaaacgaga aaaccagata aagttcgatt gcggcctggc acaggggcgc
      961 taattatact catctctgcg ccgctgggga ggggaaattt aggggtaata gtaataaatt
     1021 gtatgcaaaa gccacgcaaa aagcatggct ctgaatattt ttgcacttaa atatgatgaa
     1081 taatcacttt gttgcccccc tcgcttttcg cttcgcgtaa ggctttatct gcttccgtca
     1141 tgacaagcga gatattacgc gtgtcacccg ttgaaaaaac cgtgccaata gtgatggtca
     1201 tttgttcagg aacatcatat ctgttactaa agccggtcag gagttcgaca tttttacgta
     1261 tacgatccgc aatgattttt gcctgggcac tattgagttc ggtaaatagc aagccaaaca
     1321 cctcaccctc cagtcgcgct aaaatatcat cagggcggat gctttgctgg ataatatcga
     1381 caattgaaac cagcacttta tcacccacac gatgtcccca ttgggcattg atgcgtttga
     1441 actgattaat atcaaccagc atgacacaga agtccttaac aacaggtcgc gacaataatg
     1501 actctacgct gttgaaaaag tagcgccgat tataaatatt ggtcagcaca tcatgaactg
     1561 ccagtttgct ggagagttgc agctcctgaa aaatgttata aatcagaaaa gacacaacaa
     1621 acagtttact ggaaacttca atcccgcgac tgatatacca gatggtgtaa ttatactcat
     1681 ccagagtcag tagaagtaag ttgcagcata gcgatgccag acataataat gctattaacg
     1741 gccatagttc gctggctaat cgtgtacgca tgataataaa gaacagtaaa aatgcccaca
     1801 gacaaaccaa tatttttgta tagttgattc ccctggtcgc agtatggttg tccggacagt
     1861 agtcgacgac atacaaagaa tagtcagcgt tataactgct cagattgtgt gccagaaggg
     1921 gaaaaactaa aaaaggaatc aacgccagca acaggattcc cgtttttttc ttattgttgt
     1981 caaggatgtt gtcttttcca taacaaaaga gtgccagcga ggttaaacaa ataaaactga
     2041 gttggcggaa aatatagaaa atagaaacat cattcgactt tgtctggatc agtgtactgc
     2101 cgttaattgg tttatggata attacaatgg tttcaactaa atagataagg ccacttaaga
     2161 atgcaaggct taaaatgagt gttggtaaaa tttgtttgtt agtgaaatat ttcattaaca
     2221 tgaaaagaaa aatgacggcg ttaaggaaaa acaaagccac aacaaccatc aggtaattca
     2281 tctgtgggat gagttttaca tttgtgtttt cgttatataa ggtagtaatg caaaataaaa
     2341 ttaatgtcag caataaactg aaaataaaaa agctttgagc ttttaatttt tgtgtaccca
     2401 tagaaaccat aaaaaggaga gcaatgtgag tgctggattt tattgatggc agagatatat
     2461 agttttgacc aggatcaatt ttcgtcaacg ataaaaaata tttaaagaat aaccccatgg
     2521 aaatacgtgt tgactgaatc atttttccga atgattgttt tctggaacta aattatgtaa
     2581 aggttatgct gtcatattta aagcgattgt aagctaatgt atgtaataaa tgagataatt
     2641 tacagtaagc taaaaatcag ccaggcgata atgacctggc tgatagtttt agtctttagc
     2701 tgttgcattt tgtttatgaa acagttcacg gaacaccgga taaatatcat cctggtcgcg
     2761 gatgtgctgc atcgcaaagt tgtcgaaagt agattgcaga tgctcatatt ctcgccacaa
     2821 tgtctgatgt gcacgacggg taatttcgat atagctgtaa taacgaacaa caggtaataa
     2881 ttttttcgcc aggatttcat ggcaaagcgg agagtcatcg gcccagttat cgccgtccga
     2941 tgcttgtgca gcgtaaatat tccactgtgc cgggttataa cgctctttca ctacctcatc
     3001 catcagtttc agggcgctgg aaacaatggt gccgcctgtt tcctgcgagt agaaaaactc
     3061 atgttcatcg acttctttcg cttgggtatg atggcggatg tatacgactt ccacgttctt
     3121 atacgttctg ctgaggaaca gatacagcag aatataaaaa cgcttagcca tatctttagt
     3181 ggattgatcc attgaaccgg aaacgtccat caggcaaaac atcactgcct ggctggaggg
     3241 atcgggccgc ttctcgtagt tcttgtaacg taaatcgaag gtgtcaataa aagggacgcg
     3301 ttcaattttg gcacgtaatt ctgcaatttc tttgcgcaga cgttcctctt ccagcagttg
     3361 cgcaggttca ctgttgctga tgatggccaa attctcttcc agcgcatgaa gttcccgtcg
     3421 cttgcccgcc gtcatggctg tgcgtcgcgc cagtgagttc tgcaaggaac gcacaacgct
     3481 gatattggct ggaacgccgt tagcggtata acccgcccga tgcgttttat attcggtcag
     3541 ctggcgttgt tggttttgtt tcagattcgg taaggccaaa tcttcaaaga gcagatcaag
     3601 atactcatct ttcgaaatct gaaagacaaa ttcatcctga ccttcaccat cctggctggc
     3661 ctggccctga ccactgccgg aacctccgcc gccaccctgg ggacgttcaa ttcggtcgtt
     3721 ctggacgaaa tggtcattgc ccggatgtac gcggtggcgc aggccgccac gcccctgatg
     3781 aaacatcggt tcgctaatat cttccgtggg aatggatacg gattcgccgc tgtcgacgtc
     3841 agtcaccgaa cgcttattca tggcctcgga gatcgactgt ttaatttgcg ctttataacg
     3901 gcgtaaaaaa cgctggcgat tcaccatgct tttgtttttg ccgttcagac gccggtcaat
     3961 aaaccaggtc atatgccccc cgtactacat ttgccaactg tatgctacgc ctgtgttgcc
     4021 atttctctgg cccacggttc gctgtcgttg taggcccggt agcatgtgta ccgggccagg
     4081 gttgttaaga cgatttacgt acgcgcaaat accattcgca cagtaaacgc acctgtttac
     4141 gggtgtagcc tttttccatc atacggtcga caaagtcgtc gtgtttcttc tgctcgtcgg
     4201 ttgacgtttt ggcgttaaac gagataaccg gcaacagctc ctcggtattg gagaacattt
     4261 tcttctcgat aaccgtgcgc agtttttcat agctggtcca gttcggattg cgtccgctgt
     4321 tattcgctct ggcgcgcagt acgaagttaa caatctcgtt gcggaaatct tttggattac
     4381 tgatccccgc cggtttctcg attttctcca gctcggcgtt aagagactcg cggtcaaaca
     4441 gctgcccggt atccggatcg cgatactcct gatcctgaat ccagaaatcc gcgtaggtaa
     4501 cataacggtc gaaaatgttt tgccatattc ggaataggat tcaaggtagg ccgtctggat
     4561 ctctttgccg ataaactcgg catatttcgg gatcagataa cctttcagga actccagata
     4621 gcgttctgcc tgctcttgcg ggaactgctc gcgctcgatc tgctgttcca ggacgtagaa
     4681 cagatggacc gggtttgccg ccacttctac atgatcgaag ttgaacacgc gggagaggat
     4741 cttaaacgca aaacgcgtcg acagaccgtt catcccttca tcgacaccgg cgtagtcacg
     4801 atattcctga tacgacttgg ctttgggatc ggtgtctttc agactttcgc catcataaac
     4861 ccgcatcttt gaataaatgc tggagttttc tggctctttc aggcgcgaaa gaatggaaaa
     4921 acgtgacagt gtttccagcg tgccaggggc gcatggggcg tgagtcaatt cactgtgatt
     4981 aagcaatttc tcgtagattt tgatctcttc ggaaatgcgc aagcaatacg gcaccttcac
     5041 gatgtaaaca cggtcgagga aggcttcgtt gtttttgtta ttacggaaag tgacccattc
     5101 ggactcgttc gagtgggcga gaataatccc gttgaacggc agggcggaga taccttccgt
     5161 cccgttgtag ttaccttcct gagtggcggt taacaaggga tgcagcactt ttatcggtgc
     5221 tttaaacatc tcaacgaatt ccatgatccc ctgattggcg cggcacagcg caccggaata
     5281 gccgtaggcg tccgggtcat tctgcgcgta gtgttcgagt ttacgaatat cgactttccc
     5341 aaccagcgcg gagatgtcct ggttgttctc atcgccgggt tccgttttgg cgatagcaat
     5401 ttgttgcaga attgacggcc agaccttcac tacccggaac ttagtgatat cgccaccaaa
     5461 ttcatgcagg cgttttgccg cccacggcga catgatggtg ccgagataac ggcgaggaat
     5521 gccatactct ttttccagaa tctgcgcatc ttcctgcgga ttgaaaagac agaacggatg
     5581 atcgttgacc gggctacgct caccgttggc gctcaataca taaatcggta cgagctgcat
     5641 taatgatttc agtcgctcag caagcgatga tttaccccca cccacaggcc ccagcagata
     5701 caggatttgt ttcttctctt ccagcccctg agccgcgtgt ttcagataag agacaatctg
     5761 ttcaatcgcg tcttccatgc cgtaaaactc ttcaaacgcc ggataacgtg caatgacccg
     5821 gttagaaaag agtcgagaaa gtctgggttc ctgggctgta tcgaccatga caggctcacc
     5881 gatagccatc aatagccgct cagccgcgtt ggcataagca ctgcgatctt gccgacaagt
     5941 ggtaagaaac tcctgcagtg tgaactcttc gtccttggca gcttcatatc gctggcgata
     6001 gtgatcgaat atattcatgg tatgccgtcc tttcgttttt tagcacaggt taagagccgt
     6061 tcatatgaat agtagaggct cccggaagag gtaaactgaa cgacgtctct tgctaaaaca
     6121 cagcaactct catgccattt tatcgacgat gagaacaacg tgcccggtga tacaccttca
     6181 aaattaagcg tagatggcaa atggaaaact tgcctgcacg gctttcttaa tttcaatggc
     6241 atatcaacaa ctcatccata aattttgcat aattaatgta aagaccaggc tcgccagtaa
     6301 cgctaaattc atttggctgt aagcgcggtg tcatccgcgg caggaaaatt aaacagttac
     6361 tttaaaaaat gaaaacgtaa aaaggttggg tttcgatgta ttgacgggta aactttgtcg
     6421 cccgctaaac atttgtttaa ggaatgatta attgtgacca aactcaaact tctggcactt
     6481 ggagtgctta tcgcaacgtc tgcaggcgta gcgcacgctg aaggtaaatt ttccttgggc
     6541 gcaggcgtag gtgtcgttga gcacccatat aaagattacg ataccgatgt ttacccagta
     6601 ccggtaatca actatgaagg cgataacttc tggttccgtg gcttaggtgg tggttactac
     6661 ctgtggaatg acgcaacaga taaactttca attaccgctt actggtcgcc gctttacttc
     6721 aaagcgaaag acagtggcga tcaccaaatg cgtcacctgg atgaccgtaa gagcaccatg
     6781 atggctggtc tgtcttatgc tcactttacc cagtacggtt acctgcgtac caccctggct
     6841 ggcgataccc tggataacag caacggcatt gtctgggata tggcctggtt gtatcgttac
     6901 accaacggtg gcctgaccgt gacttcgggt attggtgtgc agtggaacag cgaaaaccag
     6961 aacgaatact attatggcgt atcgcgcaaa gagtccgctc gcagcggtct gcgtggctat
     7021 aacccgaacg acagctggag cccttacctg gagctgagcg ccagctacaa cttcctcggc
     7081 gactggagtg tttacggtac cgcgcgctat acccgtctgt ctgatgaagt tactgacagc
     7141 ccgatggtgg ataaatcctg gactggcctg atttctaccg ggatcaccta caaattctga
     7201 taatgcatct ttccagggca ttttgtgcat aaaaacaggg cgtcacgcct tgttttgcat
     7261 tacggtggtg caatacctgg gaggaaacaa tgcaacaaaa aatgattcaa tttagtggcg
     7321 atgtctcact gccagccata gggcagggaa catggtatat gggcgaagat gccagtcagc
     7381 gcaaaacaga agttgctgca ctacgcgcgg gcattgagct cggtttaacc ctcattgata
     7441 ccgccgaaat gtatgccgat ggcggtgccg aaaaggtggt tggggaagca ttaaccggtc
     7501 tgcgtgataa cgtctttctc gtctctaaag tctatccgtg gaatgctggc aggcaaaaag
     7561 cgataaatgc atgcgaagcc agtttatgcc gtctcaatac tgattatctc gatctctact
     7621 tattacactg gtctggcagt ttcgcttttg aagagactgt tgcagcgatg gaaaaattga
     7681 tcgcccaggg aaaaatccgc cgctggggcg tttctaacct tgattatgct gatatgcagg
     7741 aactctggca gctgccgggg ggaaatcagt gtgccactaa tcaggtgctt taccatctcg
     7801 gttcacgagg gattgagtac gatctactcc cctggtgcca gcaacagcag atgccggtga
     7861 tggcttacag tccattagcc caggccgggc ggttgcgcaa tggactgtta aaaaacgcgg
     7921 tagtcaacga aattgcacat gctcacaata tcagctcggc acaagtattg ttggcgaggg
     7981 taatcagcca tcagggtgtg atggcgattc caaaagcggc cacgattgcc catgttcaac
     8041 agaatgcggc tgtgcttgag gtcgaacttt cgtcagcgga attaaccatg ctggataaag
     8101 cgtatccggc accaaaagga aaaactgcgc tggatatggt gtgatgttga tacgtgccgg
     8161 atgcatcgca cccggcacac aacattaacg caaattaacg tttcgcaacg cgaatggatt
     8221 gcgccagatg tgcaggtttc tctttggtga ctttttgcgt ttctgaagcg taagccgttt
     8281 ctacacaaac aaatgttttg tagccatcat ccggcatatc gcccatacta attgaaagcg
     8341 ccggtcccgg gttccagcct acaacgttca gatgatgctg gtggcctacg gcgataatac
     8401 gattcagcgc ttcatcatta atcacgctgc aatcttgcgg attcagatac acgcgatcgg
     8461 tacggtcagg gaaggtctga ataccgtcgg tcagtacatc ttctttcgcg tcattcactt
     8521 tatcaatgaa gcgatcgccc agcccactga cgcttacctt agcgatatca cccacgttaa
     8581 agtaggtatg cagggcagag gtggtttcaa attcgccatg tgattcaaga tcgatttcac
     8641 aggttttacc cacgcggaaa tgcgctaaca gcgtaaagtc gtgcggacag aattttttcg
     8701 tctcttcgct ttgcgtcaat tcaaaagtca gcgctacgcc atcagcatct tcatgatgtg
     8761 atttcagcgt ccacggcagg ttgcgggcaa aaccgtgcgc aggcagacct tgttgtgccg
     8821 ccggaccaaa ccacggccag caaaccggta cgccaccgcg aatagcgacg ccatttttga
     8881 acggtgtgtt gttgctcaac cacagaactt cttcttcacc cgcaggtttc cacgagagaa
     8941 ggtgtgcgcc ctgtaatgca aaagaggctt ttacctgggg atgatcgacc acaatgaggt
     9001 ccagttcatc cagtttacga cgggagagga caggggagat ttgttcgatg accggaaggg
     9061 caaaaatttt cttaatcatg acgcagtcct ttaacttcat tttatcaggt aaaaaaaaga
     9121 gcgaccgaag t
//
LOCUS       DAJVUN010000157         9074 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.157, whole genome shotgun sequence.
ACCESSION   DAJVUN010000157 DAJVUN010000000
VERSION     DAJVUN010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9074
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.157"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..768
                     /gene="yfaU"
                     /locus_tag="OQQ76_003206"
     CDS             <1..768
                     /gene="yfaU"
                     /locus_tag="OQQ76_003206"
                     /EC_number="4.1.2.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxy-L-rhamnonate aldolase"
                     /protein_id="HCS1969600.1"
                     /translation="LRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQD
                     LYHQLQAVAPYASQPVIRPVEGSKSLIKQVLDIGAQTLLIPMVDTADQARQVASATRY
                     PPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDG
                     VFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWG
                     ANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY"
     gene            complement(809..1711)
                     /locus_tag="OQQ76_003207"
     CDS             complement(809..1711)
                     /locus_tag="OQQ76_003207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HCS1969601.1"
                     /translation="MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQT
                     LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAA
                     MQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT
                     IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ
                     CGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLE
                     QGIDRDQVLAATQLSEADLAANNH"
     gene            complement(1904..3094)
                     /gene="glpC"
                     /locus_tag="OQQ76_003208"
     CDS             complement(1904..3094)
                     /gene="glpC"
                     /locus_tag="OQQ76_003208"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit C"
                     /protein_id="HCS1969602.1"
                     /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK
                     DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG
                     SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYK
                     DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ
                     AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWR
                     KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAG
                     TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA
                     QALA"
     gene            complement(3091..4350)
                     /gene="glpB"
                     /locus_tag="OQQ76_003209"
     CDS             complement(3091..4350)
                     /gene="glpB"
                     /locus_tag="OQQ76_003209"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase subunit GlpB"
                     /protein_id="HCS1969603.1"
                     /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS
                     LDLLSHLPDGQPVADIHSELESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQL
                     QGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLR
                     ELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI
                     LMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG
                     DEVKKVTCKNGVVNEIWTRNHADIPLRPHFAVLASGSFFSGGLVAERNGIREPILGLD
                     VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA
                     QGCGGGVCAVSALHAAQQIAQRAGGQQ"
     gene            complement(4340..5968)
                     /gene="glpA"
                     /locus_tag="OQQ76_003210"
     CDS             complement(4340..5968)
                     /gene="glpA"
                     /locus_tag="OQQ76_003210"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit A"
                     /protein_id="HCS1969604.1"
                     /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT
                     GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS
                     FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD
                     AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE
                     YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN
                     EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV
                     LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP
                     AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN
                     LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG
                     VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL"
     gene            6241..7599
                     /gene="glpT"
                     /locus_tag="OQQ76_003211"
     CDS             6241..7599
                     /gene="glpT"
                     /locus_tag="OQQ76_003211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HCS1969605.1"
                     /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV
                     RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL
                     AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV
                     WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP
                     PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS
                     PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI
                     ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
                     YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRN
                     GG"
     gene            7604..8680
                     /gene="glpQ"
                     /locus_tag="OQQ76_003212"
     CDS             7604..8680
                     /gene="glpQ"
                     /locus_tag="OQQ76_003212"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HCS1969606.1"
                     /translation="MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP
                     EHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRY
                     YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH
                     STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI
                     KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG
                     IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRLDKLPEYTPDVNQLYDAL
                     YNKAGVNGLFTDFPDKAVKFLNKE"
     gene            complement(8722..8964)
                     /locus_tag="OQQ76_003213"
                     /pseudo
     CDS             complement(8722..8964)
                     /locus_tag="OQQ76_003213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311149.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
BASE COUNT         2099 a         2238 c         2482 g         2255 t
ORIGIN      
        1 ttacgcaagg gcgaagtgca aattggtctg tggttaagct cgactacttc ttatatggca
       61 gaaattgccg ctacttccgg ttatgactgg ttgctgattg acggggagca cgcgccaaac
      121 accattcagg atctttatca ccagctacag gcggtagcgc cctatgccag ccaacccgtg
      181 atccgtccgg tggaaggcag taaatcgctg attaaacaag ttctggatat tggcgcgcaa
      241 actctattga tcccgatggt cgatactgcc gatcaggctc gtcaggtggc gtctgccacg
      301 cgctatcctc cctacggtga gcgtggtgtt ggggccagtg tggcacgggc tgcgcgctgg
      361 ggacgcattg agaattacat ggcgcaagtc aacgattcgc tttgtctgtt agtgcaggtg
      421 gaaagtaaaa cggcactgga taacctggac gagatcctcg acgtcgaagg gattgatggc
      481 gtgtttattg gaccagcgga tctttctgcg tcgttgggct acccggataa cgccgggcac
      541 ccggaagtgc agcgaattat tgaaaccagc attcggcgga tccgtgctgc gggtaaagcg
      601 gctggttttc tggctgtggc tcctgatatg gcgcagcaat gcctggcgtg gggagcgaac
      661 tttgtcgctg ttggcgttga cacgatgctc tacagcgatg ccctggatca acgactggcg
      721 atgtttaaat caggcaaaaa tgggccacgc ataaaaggta gttattgata tcaaaggccc
      781 atggggatcg gctgtgggcc tgtgttaatt agtggttatt cgctgccaga tcggcttcgc
      841 ttagctgggt ggccgcgagc acctggtcac gatcaatgcc ctgttccagc atgcgcaaag
      901 caattttaat ggcttgttca tgcatacctt cctgccagcc aatttgatgc ccttcctgcc
      961 gtagccgttc agcaatagtc attaatctct ccttttgtag tggtgaacgt tcggcaatct
     1021 cctcaataaa acgggtgaaa cgggaggtat cgccgcattg cagcagataa ttaaacagtg
     1081 tttgtagctg gctgtcatta gtgaagcctc taaccaaaag cgtggtgatc ctgtcgacca
     1141 tgccgattaa atcgcggtcg cgaatatgct tttgaatcag ttccagcaga gctatacgcc
     1201 gatgttgcat gatctcatcg tcaggtacga tggtgatatc caccaacgga aaagcttcgg
     1261 tgtacaactg ccgggcaagt tgcggatcgt caaactcatc cagccagtta agtgagtacg
     1321 ggtagggcga tgtttcgcca tgataaaaca gcaatggcac caccagcgga actctgtcat
     1381 agcctttatc caggtgacgc tgcatggcgg cagtggcata gcgcattagc cgaaaagcca
     1441 tattcttttc tgcagagctt tgatgttcaa tcacgcagta gatatagccg tcaccgtcgc
     1501 tggtttccac ggaccacaaa acatccgagt agtaagcgcg taaacttttt tcaataaaac
     1561 tagtgggttc caggcgtaag gtttgcaggt tgcaaagctt gcgcagtggt tctggtaaat
     1621 gtatttcgag aaaatcccgt gcggtttcgg gtgtgaacat aaaggtttta aataccgcat
     1681 catgcgggga ggaggttgtt gattcggtca tggttgtccg tcacctgata tttatgatga
     1741 cgcgacatta cggttatccc aggcctttga catctgccag tttcagcctt tgcgagacgt
     1801 tttcagagga attttcactg cgttgcaacg catacattgg gcacggaatc gtgtacgcaa
     1861 aaatgcccgg taaccacatg cttaccgggc atcagaaagg agtttaagcc agcgcctggg
     1921 ccagtagcgt aatcggatgt tcgcagcgaa gacttgtgga catctcaatc tgccatttac
     1981 aggtttcgca gtcggtgacc accagatctg cgccgctttc ttctatctgg cggaacagtg
     2041 gtgcgccgat ggcttgtgag gtggggtagt tctctttttt gaaaccgtaa gtacccgcaa
     2101 taccgcagca ctgggaatcc agcaccgtta actcaagccc cgggatttta cgcaacagct
     2161 ccagggtgta gagcgtccag cccatttttt ccatatggca cggagtgtga taaaccactt
     2221 tcagcggcag cggtttcagc ggtaacgttt tgccttcgtc cagcttgcgc cacagccagc
     2281 gggttgccag ttcgatatga tcgcgcaagc ctttgttgtc gacattcagc acttccgggt
     2341 attcgtcgcg cagggcaaat gtacaggttg aggaggtggc aatcaccgga atgcctttta
     2401 ctcccacagc ttcgcggatc gactctacat tcgtaattgc ctgtttgcgt gctttatcgg
     2461 taaagccgtt ggcgattagc ggtacgccgc agcatttttc tttgctgagc agttgtacac
     2521 cggtacccat tgcgttgagc actttaatta aatctttacc taactgcgga tggttgtagt
     2581 taacgaagca gccgtgaaag aaagcgacct ggtctttata ttgtgcttgc tgagccgcta
     2641 tgctgcgata ccagcgacgg aacgtgccga aggagtattt cggtagcgtg cgacgatgat
     2701 cgatttttaa cgccgcatca agcagctgcc gcaccggttt cagcgaggta gcggtgttga
     2761 cgattggtgc gaacggcgtg gaaacgctac ccatcaggtc ggtatgactc aacacaaaat
     2821 tacgcagcga cgggcgcgtg gtgtcatatt ttgcccgcgc gcgctggata atatcgccaa
     2881 tcttcacatc ggacgggcag gcgacttcac aacgtttgca gttgatgcaa tatttcagcg
     2941 cctcgtcata cagtgcgcca tctttcaaac gcagacgctc gccatccggc ccggcttgtt
     3001 ttggccctgg ataaccggga ttcacccggc tcaccgggca ggcggtggtg cagacggtgc
     3061 acttaatgca gttttcgaag ctggtgtcgt tcattgttgg cctcctgcgc gttgggcaat
     3121 ctgttgagcg gcatgtaaag cactgacggc acaaacaccg ccgccgcatc cctgggcgat
     3181 gggatcaaat ccgcccagca ccgaaccgat ggcaaacagg ttctcaatgg tttgccctgc
     3241 ctgcgacggg cgtagcgtct catcagtggt tacaccgaac tgctgccacg gttgcggcgc
     3301 aaaaaaatcg cccttatacc attcaccccg cgtggcggtt tgtagcacat caaggccgag
     3361 aatcggctcg cgaatgccgt tacgttccgc taccagtccg ccactaaaga aactgccgct
     3421 ggcgagaacc gcgaaatgtg gacgtagcgg aatatcggcg tgattgcggg tccagatttc
     3481 attcactacg ccatttttac aggtcacttt tttcacttca tcgcccggca tccacacgcc
     3541 accctggcgc acaaactggc gctgtaactg gttttgcaga cgaatgccca gcacggaagg
     3601 cggcagcgtt ggcaaaagca tcagtgaaca aggtagtttt tcattcaacc aacgccacag
     3661 tttgtcatcg gccaggccga agcaggcagg catcaggatc atttcgcagg tattggcgac
     3721 aggaataagc gcatcaagta acagcggcca gttttcttca ttatcaagga aacgggcgat
     3781 attcacagcg cgaaattcgg tggcgttatt gcgcaggaca tccagttccg gcagctctat
     3841 ttctgcggtt tcaaccgaaa gatccagttc gcgcaacgaa gccgccgcaa gatgcgcctg
     3901 aaaatccatc aggccgctta tcccgaccac acatattttc ttcgcgggca acggccagac
     3961 ggggacttct ggcgaactta gccaggtaga gcgcagagtg ccgagcggcg taatccgctg
     4021 gtgagccagt tctacgctgc cctgcaattg cgcaccgctt tcagcgatta atgcctgcgc
     4081 ctggcaagcg agatcgagca cgcgttgtgg cccgagaaga gagtaaggat gtgcaggtgc
     4141 ctgctgacgc aaagattcca gttcactgtg aatgtctgcc acgggttgac catctggcag
     4201 atggctcagc aaatccagcg aaccggatga gaaatgcaac gcgctttgac cacgcgtgac
     4261 aatggcacag cgcaggccgt gtttttgcag ttgcaggcca cagagtaatc cggcgaggcc
     4321 gccgcccata atgacagtat caaagcgcat ctttctgctc cttctccaga ccacacagtc
     4381 cctgataaac ccagcgggta aattcgcttt cgcgcagtgc gtctccccag gcgatgggtt
     4441 gcacgccttt ccagcgttcg ttaaggaagg tggaaagttg ctcgatagat tgcgcggacg
     4501 tcgtgacgtt aaaccgttgc agcagtccgg cagcgcggca ggcgcagagt tcgccctggc
     4561 aggtgcccat ccccacacgg gtacgacggc gtaaatccag caggctatta acgtttaaat
     4621 tttctaccgc gtactgcact tcacccgcag ttaccgcttc gcactcacat accaggctac
     4681 ggtgcagacg gccttcgctc agccaggcag gcgtgcgatc gccatgacga taaaccgcag
     4741 aaccgcgcag cggggcaggc agggagatga ctttacgcaa ggtaacttca gcgggttctt
     4801 gtgaaccagg cagtgccaga tcggcagtcg tacaggggcg cgtgttgccc agtttgcggc
     4861 ataccgcgtc ggtagcccat tcagccatca gccgataggt catcagtttg ccaccggtga
     4921 tggtgataaa tccgtccaga ccatcgcgtt cagcatggtc gagcagcacg atgccacggc
     4981 tgacgttacg tccgctcgga tcgtcatcgc tggcaaccag cgggcgcacg ccagaatagg
     5041 cccgcaaaat gcgcgttttc gccatcacgg gggccagttt ttccccttca cgcagcagaa
     5101 tatcaacctc ttctgccgtc actcgattat cgtcaatctc gttgtaatca atacgtaaag
     5161 aggtggtacc aatcagcgaa atggtatcgc caggcaccag aatatcggcg tcggaaggtt
     5221 tacggcagcg gttgatcaca tgctggttaa tgcggtgatc catgatcagc agcgatcctt
     5281 tcgccgggaa catgcgaatg cgcagatcgg catattcggc aatgtgttgc ccccagatcc
     5341 cagcggcatt aaccacgaca ggtgcatgaa gggcctgagt ttcgccggtg agatggttac
     5401 gtacacgaac accgcacacc gtcgcgcctt cacgaatcag ccccgtgact tcatgagcgg
     5461 taaggataac ggcaccgtgt tctttggcat ccagcatgtt tgctgcggtc agacgaaatg
     5521 gatcaacggt gccatccgga actttcaccg cgccaatcag tgccgggtta acggcaggtt
     5581 cgataatgcg cgcttgctgc gggtctatag cttctgcgct gatccctgct tcttcgcagg
     5641 cgcgaataaa agtggcctgg aatgagaggt catcttccgg cagggtgata aacaggccgt
     5701 tggttggttc aacgcagtga cgtgcaatgc gtttcaggat ctggttttca ctaatgcatt
     5761 cgcgggccga ttccgcatcg gttaccgcat agcgcgcacc gctgtgcagc aggccgtggt
     5821 tacgcccggt ggcaccggtt gcgatgtcgt ggcgctcaac caaaatcacg cgcagcccgc
     5881 gcagggcaca gtcgcgggca atcccggctc ccgttgcgcc gccgccaatg ataatcacgt
     5941 cacttgattg cgagtcgcga gttttcattg ttatccctct gaagttcgtt ttttaccatt
     6001 tagccatagt aaaaacatga attgtttgat ttcgcgcatg ttcgctcata attcgaaagt
     6061 gaaacgtgat ttcatgcgtc attttgaaca ttttgtaaat cttatttaat aatgtgtgcg
     6121 gcaattcaca tttaatttat gaatgttttc ttaacatcgc ggcaactcaa gaaacggcag
     6181 gttctctcac tgaatcaggc tgttaatcat aaataagacc acgggccacg gaggctatca
     6241 atgttgagta tttttaaacc agcgccacac aaagcgcgct tacctgctgc ggagatcgat
     6301 ccgacttatc gtcgattgcg ctggcaaatt ttcttgggga tattctttgg ctatgcggct
     6361 tactatttgg ttcgtaagaa ctttgcgctt gctatgcctt atctggtcga gcagggattc
     6421 tctcgcggtg atttaggttt cgcgctttcg gggatctcga tcgcttatgg attttcgaaa
     6481 ttcataatgg gttcggtatc agatcgctcg aatccgcgcg ttttcctccc cgcaggtttg
     6541 attctggcgg cggcagtgat gttgtttatg ggctttgtgc catgggcgac gtcgagcatt
     6601 gcggtgatgt ttgtactttt gttcctctgc ggttggttcc aggggatggg gtggccgccg
     6661 tgtggtcgta ctatggtgca ctggtggtcg cagaaagaac gtggcggcat tgtgtcagtg
     6721 tggaactgtg cgcacaacgt tggtggtggt attccgccgc tgctgttcct gctggggatg
     6781 gcctggttca atgactggca tgcggcgctc tatatgcctg ctttctgcgc cattctggtg
     6841 gcattattcg cctttgcgat gatgcgcgat accccgcaat cctgtggctt gccgccgatc
     6901 gaagagtaca aaaatgatta tccggacgac tataacgaaa aagcggaaca ggagctgacg
     6961 gcgaagcaaa tcttcatgca gtacgtactg ccgaacaaac tgctgtggta tatcgccatc
     7021 gccaacgtgt tcgtttatct gctgcgttac ggcatcctcg actggtcacc gacttatctg
     7081 aaagaggtta agcatttcgc gctggataaa tcctcctggg cctacttcct ttatgaatat
     7141 gcaggtattc cgggcactct gctgtgcggc tggatgtcgg ataaagtctt ccgtggcaac
     7201 cgtggggcaa ccggcgtttt ctttatgaca ctggtgacca tcgcgactat cgtttactgg
     7261 atgaatccgg caggtaaccc aaccgtcgat atgatttgta tgattgttat cggcttcctg
     7321 atctacggtc ctgtgatgct gatcggtctg catgcgctgg aactggcacc gaaaaaagcg
     7381 gcaggtacgg cagcgggctt taccgggctg tttggttacc tgggcggttc ggtggcggcg
     7441 agcgcgattg ttggctacac cgtggacttc ttcggctggg atggcggctt tatggtaatg
     7501 attggcggca gcattctggc ggttatcttg ttgattgttg tgatgattgg cgaaaaacgt
     7561 cgccatgaac aattactaca aaaacgcaac ggaggctaat ggcatgaaat tgacgctgaa
     7621 aaaccttagc atggcgatca tgatgagcac tatagtcatg ggaagcagtg caatggcggc
     7681 ggacagcaac gaaaaaatag tcatcgccca tcgcggtgcc agtggatatt tgccggagca
     7741 tacgctgcca gcaaaagcga tggcgtatgc gcagggagcg gattatctgg aacaggattt
     7801 ggtgatgacc aaagacgacc atctggttgt tctgcatgac cattatctcg atcgtgttac
     7861 tgatgttgcc gatcgtttcc cggatcgggc gcgcaaagac ggtcgttact acgcgataga
     7921 tttcacgctg gatgaaatta agtcgttgaa atttaccgaa ggtttcgata ttgaaaacgg
     7981 taaaaaagtg cagacttatc cggggcgttt cccaatgggt aagtccgact tccgggtgca
     8041 cacctttgaa gaagagattg aatttgttca ggggttaaat cactctaccg ggaaaaatat
     8101 cggtatttat ccagaaatca aagcgccgtg gttccatcat caggaaggga aggatattgc
     8161 ggcaaaaacg ctggaagtgc tgaagaaata tggttacacc ggtaaagacg ataaagttta
     8221 tttgcaatgt tttgatgctg atgagctgaa gcgtattaag aatgagctgg aacccaaaat
     8281 gggcatggag ctcaatctgg tacagctgat tgcctatacc gactggaatg aaacgcagca
     8341 gaaacagccg gatggaagct gggttaatta caactacgac tggatgttta agccgggtgc
     8401 catgaaacag gtggcggaat atgcagatgg tattggtccg gattaccata tgttgattga
     8461 ggagacatcg cagccgggta atatcaaact cactggcatg gtgcaagatg ctcagcagaa
     8521 taaactggta gtgcatcctt ataccgtgcg gttagataaa ctgcctgaat acactcctga
     8581 tgtgaatcag ttatatgatg ctctgtataa caaagcgggt gtaaatgggc tgtttactga
     8641 tttccctgat aaggcagtaa aatttcttaa taaagagtaa tgttactgca ggatggcgtt
     8701 catgcgccat cctgtctcat atcaaatttt tccaatcgcc actaattgtt ccatgcacat
     8761 ttgtagtaaa aacagtggac tgccttctac cggcttttct ttagccagca acgaaatctg
     8821 tcgatagaaa gttggttcga gaggaacgga acacaattca cctgcaatgc ttttcagcgt
     8881 taactctggt tgtaaggcga tgcctaatcc ctgtcgaata aaattcatcg ctgtatccgc
     8941 ctgattaaat tcacatttta tctgctgggc gcactattag tggtagtggc tggtggaatc
     9001 tatgcgctgc aaatgaaggg taaaagcggt gtcaagctag tagtggcaaa agaaattcat
     9061 taatacgaca cgtt
//
LOCUS       DAJVUN010000158         8923 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.158, whole genome shotgun sequence.
ACCESSION   DAJVUN010000158 DAJVUN010000000
VERSION     DAJVUN010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8923
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.158"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(246..1217)
                     /locus_tag="OQQ76_003214"
     CDS             complement(246..1217)
                     /locus_tag="OQQ76_003214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000817038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family plasmid partition
                     protein"
                     /protein_id="HCS1969607.1"
                     /translation="MKRAPVIPRHTTHSQSTEDTSSPAPAAPMVDSLIARVGAMARGN
                     AISLPVCGREVKFTLEVLRGDSVESASRVWSGNERDQELLTEDALDDLIPSFLLTGQQ
                     TPAFGRRVSDVIEIADGSRRRKAAILTESDYRVLVGELDDEQMAALSRLGNDYRPTSA
                     YERGLRYTSRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFAHPGELSA
                     RSGEALQKAFADKEELLKQQAETLHDQKKAGLIFEAEEVISLLTSVLKQSPASRVNLS
                     SRHQFAPGATALYKGDKMVLNLDRSRIPAECIEKIEAILKELEKPGV"
     gene            complement(1217..2383)
                     /gene="sopA"
                     /locus_tag="OQQ76_003215"
     CDS             complement(1217..2383)
                     /gene="sopA"
                     /locus_tag="OQQ76_003215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid-partitioning protein SopA"
                     /protein_id="HCS1969608.1"
                     /translation="MGLMDTLNQCISAGHEMTKAIAIAQFNDDSPEARKITRRWRIGE
                     AADLVGVSSQAIRDAEKAGRLPHPDMETRGRVEQRVGYTIEQINHMRDVFGTRLRRAE
                     DAFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDL
                     HIHAEDTLLPFYLGEKDDASYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPA
                     DPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQ
                     FFDMLRDLLKNVDLKGFEPDVRILLTKYSNNNGSQSPWMEEQIRDAWGSMVLKNVVRE
                     TDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR"
     gene            3124..4134
                     /locus_tag="OQQ76_003216"
     CDS             3124..4134
                     /locus_tag="OQQ76_003216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HCS1969609.1"
                     /translation="MTSENNSLLLNLQEVDKTTGEVVKLDVNSTSTVQPVALMRLGLF
                     VPTLKSTGKSKANRKNVTDATEELVQLAIAKSEGYTDVKITGSRLDMDTDFKVWLGII
                     RSMSEYGVKSDTLELSFVEFVKMCGFDSRRSNKKMRDRISNSLFKLASVTLKFQSETK
                     GWTTHLVQSAYYDINEDIVEIKAEPKLFELYHMDRRVLLRLKAIDALQRKESAQALYT
                     YIESLPQNPAPISMKRMRDRLNLTSNVYTQNHTVRKAMEQLRDIGYLDYTEFKRGRAT
                     YFSVHYRNPKLISSPVKVPRKEEEEKAPEQNYDEVIKALKAAGIDPLKLAEALSAMKP
                     EN"
     gene            complement(4940..5269)
                     /locus_tag="OQQ76_003217"
                     /pseudo
     CDS             complement(4940..5269)
                     /locus_tag="OQQ76_003217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371608.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
     gene            5387..6112
                     /locus_tag="OQQ76_003218"
     CDS             5387..6112
                     /locus_tag="OQQ76_003218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HCS1969610.1"
                     /translation="MAYSIGEFARLSGITATTLRAWQRRYGLLKPQRTEGGHRQYSDE
                     DVQQALKILDWVKKGVPIGQVKPLLERPTSRLTNNWLTLQQSMLQRLQDGKIESLRQM
                     IYDAGREYPRPELVANVLRPLRSQVSANVAAAMTLREILDGIIIAYTSFCLEGDKKAP
                     GDNILLSGWNLNDPCEVWLEALTRTGQGHRIDILPTPPATLAPEIFPDRHWLLVTRGK
                     LTAARKKQIEQWQQQVSLEVIIL"
     gene            6212..6622
                     /gene="uraH"
                     /locus_tag="OQQ76_003219"
     CDS             6212..6622
                     /gene="uraH"
                     /locus_tag="OQQ76_003219"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000750474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS1969611.1"
                     /translation="MKKTASLLMLTTLAFAPAAFSAPAGTLSVHILDQQTGMPPSDVT
                     VTLEKQQQDKWTPIASGKTDHDGRIKSLYPEDQDMQPGVYKVAFKTADYFHGKKLDSF
                     FPEIPVLFTVTRTNEKLHIPLLLSQYGYSTYKGS"
     gene            6725..7684
                     /locus_tag="OQQ76_003220"
     CDS             6725..7684
                     /locus_tag="OQQ76_003220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000208729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 and DUF1722 domain-containing protein"
                     /protein_id="HCS1969612.1"
                     /translation="MTTKPVLGISGCLTGSAVRFDGGHKRMGFVMDELAQWVSFRPVC
                     PEMAIGLPTPRPAIRLTLTDSGETQLRFSKPPHDDITQKMADFTADYLPKIGDLSGFI
                     VCAKSPSCGMERVRLYDENGNRGRKEGVGLFTAALLETYPWLPVEEDGRLHDPVLREN
                     FIERVFALHELNTLRAKGLTRRALLDFHSRYKLQLLAHHQAGYREIGPFVASLHEWED
                     LDAFFVAYREKLMTILKKPASRKNHTNVLMHIQGYFRNQLNSRQRVELRDVILHYRDG
                     LLPILAPLTLLKHYMAEYPDRYLMTQNYFDPYPDDLGLRLAVT"
     gene            7830..8918
                     /locus_tag="OQQ76_003221"
     CDS             7830..8918
                     /locus_tag="OQQ76_003221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1969613.1"
                     /translation="MITTLHIQNYRSIREMSLELEQLNIVFGPNGTGKSNIYKAIHLM
                     HSAAQGQFSQALANEGGILKVFWAGKTRSDQLRRMNLAVETETYEYELQVGFVEKLPY
                     PSQFQLDPVIKEESIWLSGQYRRPSSQLMKRKNQAVFLNNVHHEKVTHSGTLYENESV
                     FGQLGEPHLYPEVSQMRESLRNWRFYQEFSVSIGSAMRAPQVGFRSPVLASDGANLAA
                     AFQTIVEIGDELLLMRILDQAFPGCVFYSDNTGGRFRMMMQREGLSRPLEPAEFSDGT
                     LRFLCLAVALLSPRPPAFIALNEPENSLHPQMLPALASLIAEASRYSQIWLTSHSPEL
                     ANLIEKQRSFSLYQLSMVEGETKVERLG"
BASE COUNT         2253 a         2358 c         2286 g         2026 t
ORIGIN      
        1 ggcgatgcag gtgggaccgt ggtcccaggc agataacctg accggcgata caggtgggac
       61 cgtggtccca ggcagataag ctgaccgacg acgcaggtgg gaccgtggtc ccagggagat
      121 aacctgagcg gcgatacagg tgggaccgtg gtcccagaga gaatattcag gccagttatg
      181 ttttctggcc tgtgagaaag gaaatgaagt aaagggagat caccgtagac taaagcgtgt
      241 ccgcatcaga ctcctggttt ctcaagctcc ttaagaatgg cttctatttt ctctatacac
      301 tccgcaggaa tgcgggacct atccaggtta agcaccattt tatcgccctt atacaatgct
      361 gttgcccctg gagcaaactg atgacgtgag ctcagattaa ctcttgatgc gggagattgt
      421 ttcagtacgg atgttaaaag actaatgacc tcttcagctt caaagattag tcccgctttc
      481 ttctgatcgt ggagagtctc agcctgctgc ttcagtaatt cttctttatc tgcaaaagcc
      541 ttctgaaggg cttcacctga ccgggcagac agttctccag gatgtgcaaa cagggcaaca
      601 acggatttag gcaatttggc cgtattgata cagcgggtaa tgatcttacg agagatgttt
      661 tccgcatcgg caagcgcaga aatatttcct gcaaactcat tctgcagccg gcttgtataa
      721 cgcaggccac gttcataagc actcgtcggc cgataatcgt tacccagtcg ggacaatgca
      781 gccatctgct catcgtccag ttcaccaacc agaacgcgat aatcactttc cgtcaggatt
      841 gcggctttac ggcgacggct gccgtcggca atttctatga catcagaaac ccggcggccg
      901 aaagctggag tctgctgacc ggtcagtaaa aatgaaggaa tgagatcatc cagagcatct
      961 tcggtaagta gttcctgatc gcgctcattg cctgaccata cgcgtgaagc gctctcaaca
     1021 gagtctcccc ggagcacctc aagggtaaat ttcacttccc gtccacatac cggaagagag
     1081 attgcattac cgcgggccat agcacccacg cgcgcaatta atgaatccac catcggcgcg
     1141 gccggcgccg gtgatgaagt atcttcagtc gattgactat gtgtggtatg tcttggaatg
     1201 acaggagcac gcttcattat ctaatctccc agcgtggttt aatcagacga tcaaaaatct
     1261 cattgcaaac aggctcccag atagagaggg cattacgcca ggcaccggtt gaagaacgtt
     1321 gatcaatagc ctgttcaaaa acggttctca tacggatctg acctttaccg acttcatccg
     1381 tttcgcgcac aacattttta aggaccatgc ttccccaggc atcccgaatt tgttcttcca
     1441 tccacgggga ctgtgagcca ttattattac tgtatttggt aagcagaata cggacatctg
     1501 gctcgaagcc tttaagatcc acgttcttaa gcaggtcacg aagcatatcg aaaaactgca
     1561 gtgcggaggt gtagtcgaac agctctgccg gagtagggac aatcagaaca tcagcagcgc
     1621 atacaacatt tatcgtaccg ataccaaggt tgggtgcact gtcgataact atcacgtcat
     1681 aatcatgagc gacagtttca atggccagac ggagcatcag gtgcgggtca gcaggtaatt
     1741 tgccttcgtc aaatttcccc atcagctcgg tttcaatgcg gtgcagtgcc agacaggacg
     1801 ggatgatatc aaggccaggc cagcaggtgg gctttatagc gtagctggcg tcatcctttt
     1861 ccccaagata aaagggcagg agagtgtcct cagcatgaat atgaagatcg ggcacccatc
     1921 cgtgatacat agaagcagtt ccctgtgggt cattgccttc aacaagcaga acacggagtc
     1981 ctttcagagc aagatcctga gccaggtgaa cggatactga ggttttgtaa acaccacctt
     2041 tgtgagctgc aacgccaatc accggcggaa acgcatcttc agcacggcgc agtcgtgtac
     2101 caaatacatc ccgcatgtga ttgatttgtt cgatggtata accaacgcgt tgctcaactc
     2161 tcccacgggt ttccatatca gggtgcggca gccggccagc tttctcggca tccctgatag
     2221 cctgagatga cacgccaact aaatctgccg cttcaccaat cctccagcgc cgggttattt
     2281 tccgggcttc cggactgtca tcattaaact gtgcaatggc gattgctttc gtcatttcat
     2341 gaccagcact tatgcactgg ttgagtgtat ccatgagtcc catactgaac atcctttaat
     2401 catcactttg cattatttta ttaaatcttg gaatttattg caaagcaaca ataaaatcgc
     2461 aaagcacacg aaaaagtgca aagtgaacca cattgggtaa tgaaagaacg caggggatta
     2521 caaaagagta cataccgcag tcaatattaa tcactgccgc tcgccgcagt aagcgatctc
     2581 acacagtgag aaagcggcga ggaagcggaa aatcacagaa ctcacagatt gcacgtacgt
     2641 cgggttgcta aagatgactc gggatcagcc agttataatg aaattgactg cggtatgtaa
     2701 tatattgact atggtatgat gcttaccgca tctgtaggaa agacgactca gcataccgca
     2761 gtcaatgttt cattgttgta cctgtagatc tcaatcttcc agagcgtatt caggaaaatc
     2821 aggccagggg tctggatatc tggtgtggcg cttccggcct tgtatctggg ttattcatgg
     2881 tctcgatcca ataattgatc ccaaggagat catagtgaga tccaaaagag atccccggat
     2941 cgctccagca tgcgctgtaa ctggctttaa cgtctgtctg gatcgactgc ggaatgtaaa
     3001 atgttgactg ttatatgcat aatctaatac tgtgatatgc aacggtattt actgaggtat
     3061 gtatatccgt tgactgcgat acgtattact acatcctttt gtggataacc gttgaggatc
     3121 aagatgacga gcgaaaataa tagcttactt ctgaaccttc aggaagttga taagacaacc
     3181 ggtgaagttg ttaagctgga tgtcaacagc accagtaccg tgcagccagt agcgctcatg
     3241 agactcggtc tcttcgtccc aactctgaaa tcaacaggga agagcaaggc gaaccggaaa
     3301 aacgttacag acgcgactga ggagcttgta cagctggcca ttgccaaaag cgaaggatac
     3361 actgacgtta agatcaccgg ttcgcgtctt gatatggaca cggattttaa agtctggctg
     3421 gggataattc gctccatgtc ggagtatggg gtaaaaagtg acaccctgga actgtcgttc
     3481 gtcgaattcg ttaagatgtg cggatttgac tcccgtcgtt caaacaaaaa aatgcgcgat
     3541 cgcatcagta attccctgtt taaactcgcc tcggttacgc tgaagttcca gagcgagacc
     3601 aaaggatgga ccacccatct ggtgcagtca gcctattatg acatcaacga ggatatcgtt
     3661 gagatcaagg ctgaacctaa gctgtttgag ctttaccaca tggacagaag ggtactgctg
     3721 cggctgaaag ccattgacgc cctgcagcgc aaggaatcag cccaggcgct ttatacctac
     3781 atcgaaagtc ttccccagaa tcctgcacct atttccatga aacggatgcg tgaccggctg
     3841 aatctcacct caaatgtcta tacacagaac cacacggtgc gtaaggcgat ggagcagctg
     3901 cgtgatattg gttatctgga ttacaccgag tttaaacgtg gccgagccac ctatttcagc
     3961 gtgcattatc gcaaccccaa actcatcagt agtcctgtga aggttccgcg caaagaggaa
     4021 gaagagaagg cgccagagca aaattatgac gaagtcatta aggcgctgaa ggctgctggc
     4081 atcgatcctc ttaaactggc tgaagccctc tcagcgatga agccagaaaa ttgactgcga
     4141 tatgcatatc atgactgccg tatgccgcta aggacattcc attgactgtg atatgcatca
     4201 cgcataccgc agtcaatatt tattctctat catgtctgcc cggatcgaac aatattgact
     4261 gtcatatgtg atttcgggtc atgatacgca gatattgact acggaatgcg ggtttaatgg
     4321 gggtaatccc tggtctgttc accattccat gggggataac atgccacagt caatttttca
     4381 gtaacgctct atatccctta cgaaaatctc aatcgggtgc tgagacggtc atgttacctg
     4441 acggtatccg ttcccctgtg tactgcaggt ttagcccggc aggatgagac tgcagctgtc
     4501 tgtataaccc ggcgccagct tcacactgtt aaatgcgatc aggaaacggg agccgaatgg
     4561 cagaaaggtg ttggctaggg aaggtgcgaa taagcaggtt atttcttccc aagctgactc
     4621 gctgattaaa atttcgcgga tctgggccga tttttttccc gcaaacacat cgaatcagcc
     4681 tatttagggg tcagtttgga gatcggaaat ttttgtacgt taagcacatt atttaaccaa
     4741 ttcggatacg taagtgattg atttatcgtc attggctatc gcttttaggt tgtcgctctt
     4801 gctgtatcgc atttaggtta tccgattaag acaaaatccc ctgaaaacgc tgtatagcgc
     4861 gggagtacac cctattgcta caggtaagcc tgttcaaaaa acaggcttac cgtacaataa
     4921 ttctctatat ccaaactgac cccaagaagg acaccttcag cgcggccgtg gtcggttcgc
     4981 cggtaaagta ggctttaccc tcgctctcat tccacttgtt cttcacaggg tcgtagccgc
     5041 ggttaagcac gctgatgccg ccgtcgctgc gcttgccgta ggtggcggta acctgctcta
     5101 ggccgcgttc aaagcggttt tccaggcgag cgacttcgta ccatttgcca agatagcggc
     5161 tggcgtcaaa accggaaatg ggctgcacgc ccttcggtgg ggtaggggat ttacaggcta
     5221 ccagcgtcag ggcaatggca acaccggtca caacaggcca tagcttcatg agaattcctt
     5281 tcatttgcac ggttggaaat taagtgtagt gcaccgcggc ggcgcttcat cccatccgcg
     5341 aaaattcgta gtatattgag agtattcctc aactctggac acggacatgg cttactccat
     5401 cggcgaattc gccagactca gcgggatcac cgccaccacg ctgcgggcct ggcagcggcg
     5461 ctacggctta ctcaagcctc agcgcacgga gggcggccac cgccagtaca gcgatgagga
     5521 cgtccagcag gcgctaaaaa tcctcgactg ggtaaaaaaa ggcgtcccga ttggccaggt
     5581 caaaccgctg ctggagcgcc ctacgtcgcg cctgaccaac aactggctca cgctgcagca
     5641 gagcatgtta cagcgcctgc aggacggcaa aatcgagtcc ctgcgtcaga tgatttacga
     5701 cgcaggacgc gagtacccaa gaccagaact ggtcgcgaac gtgctgcgtc cgctgcgcag
     5761 tcaggtgtcg gcaaacgtcg ccgccgccat gaccctgcgg gagatcctcg acggcatcat
     5821 catcgcctac acctcgtttt gcttggaagg cgataaaaaa gcgccgggcg acaacatcct
     5881 gctcagcggc tggaacctga atgacccgtg cgaagtctgg ctcgaagcct taacccgcac
     5941 cgggcaaggc caccgtatcg atattttacc cacgccgccc gccacgctgg ccccggagat
     6001 tttcccggac cgccactggc ttctggtcac gcgcggtaaa ctcaccgccg cgcgcaaaaa
     6061 gcagatcgag cagtggcagc agcaggtatc gcttgaagtg attatcctct aatcattttc
     6121 tcctgcggga atcttcacga aaagttgaat attttcccgc gccacaaatg ctaacgtttt
     6181 cctgtgaccg acaaccccac aggaaaacac aatgaaaaaa actgcctctc tgctgatgct
     6241 gaccaccctg gcctttgccc ctgccgcctt tagcgcccct gccggcacgc tgagcgtaca
     6301 cattcttgac cagcaaaccg ggatgccgcc atcggacgtt accgtcacgc tggaaaaaca
     6361 gcagcaggac aaatggaccc caattgccag cggcaaaact gaccatgacg gccgcatcaa
     6421 atcgctttat ccggaggatc aggatatgca gcccggcgtc tataaagtgg cctttaaaac
     6481 cgcagattac ttccacggga agaagctgga ctccttcttc ccggagatcc cggtgctgtt
     6541 caccgtaacc cggaccaacg aaaagctgca catccctctc ctgctgagcc aatacggtta
     6601 ttcaacttac aagggcagtt aagaaacgtt gattttaaag gcaaataaaa aataattccg
     6661 ctaatacttg gacaaattag ttatgttgtg taagttttaa agagaagaac gggaggacca
     6721 caccatgaca acaaaacctg tgctcggtat tagcggatgt ttgaccgggt ctgccgttcg
     6781 cttcgacggc ggacacaagc gtatgggctt tgtcatggat gaactggccc agtgggtgag
     6841 tttcaggccc gtctgcccgg aaatggcgat tggcctgccg acgccacgcc cggccatacg
     6901 cctgacgctg acggacagcg gcgaaacgca gctccgcttc agcaagccgc cccatgatga
     6961 tataacgcag aaaatggccg actttacggc ggactatctg ccaaaaatcg gcgatctgtc
     7021 gggatttatc gtctgcgcga aatcgccaag ctgcggcatg gaacgcgtgc ggctatatga
     7081 tgaaaacggc aaccggggcc gcaaggaggg tgtcgggctg ttcaccgccg ccctgcttga
     7141 aacctacccg tggctgcccg tggaggaaga cggtcggctg cacgacccgg tgctgcggga
     7201 aaactttatc gagcgggtat ttgccctgca cgagctgaac acgctgcgcg ctaaaggcct
     7261 gacgcgccgc gcgctgctgg atttccacag ccgctataaa ttgcagcttc tggcgcacca
     7321 tcaggcgggc taccgcgaga ttggcccgtt cgttgcgtcg ctgcatgaat gggaagatct
     7381 ggacgcgttc ttcgtggcgt accgcgaaaa gctgatgacc atcctgaaaa agcccgcctc
     7441 gcggaaaaac cataccaacg tgctaatgca tatccagggc tatttccgta accagctgaa
     7501 cagccgccag cgcgtcgagc tgcgcgatgt gatcctgcac tatcgcgacg ggctgctacc
     7561 catcctcgcg ccgttgacgc tactgaaaca ctacatggcc gaataccctg accggtatct
     7621 gatgacgcaa aactactttg atccctatcc tgatgatttg ggtctgcgtc tggcagtaac
     7681 ctgacgataa aaatgcgaag gcccgtttga cccacagagg cccaaagcag taccccgttt
     7741 agacgacacc ctcactgtcg tctctttttt gcattccaca caaaagactg taattatgta
     7801 caggattgta acgcaaaaag ggactgcctg tgatcaccac cctgcacatt caaaactacc
     7861 gctcgattcg cgaaatgtcg ctggagctgg aacagctcaa catcgtcttt ggcccaaacg
     7921 gcaccggaaa atccaatatc tacaaggcga tccacctgat gcacagcgcc gcacaggggc
     7981 agttttcgca ggcactggcg aacgagggtg ggattttaaa agtgttctgg gcaggcaaaa
     8041 cccgcagcga ccagctgcgg cggatgaatt tggccgttga aaccgaaacc tacgaatacg
     8101 agctgcaggt aggctttgtc gaaaaactgc cttacccctc acagtttcaa ctcgatccgg
     8161 tgatcaaaga agagtccatc tggctgagtg gtcaataccg ccgcccgtcg tcacagctga
     8221 tgaagcgtaa aaatcaggcc gtatttctga acaacgtgca tcacgagaaa gtcacccaca
     8281 gcggcacgct gtatgagaac gaatcggtgt tcggccagct tggcgagccg catctttacc
     8341 cggaagtgtc gcagatgcgc gagtcgctgc gtaactggcg cttttatcag gagttttctg
     8401 tatcaatcgg ctcggccatg cgcgcgcctc aggtcggttt ccgctcccca gtgctggcca
     8461 gcgacggcgc aaacctggcg gcggcgtttc agaccatcgt ggaaattggc gacgagctgc
     8521 tgctgatgcg catcctcgac caggccttcc ccggctgcgt gttttacagc gacaacaccg
     8581 gcggacgctt ccggatgatg atgcagcgtg aagggctaag cagaccgctg gagccggcgg
     8641 aattctccga cggcactctg cgttttctgt gcctggcggt ggcgctatta agcccgcgtc
     8701 caccggcctt tatcgccctc aacgaaccgg aaaacagcct gcatccgcag atgctgcccg
     8761 cgctggcgag cttaatcgcc gaggccagcc gctactcgca aatttggctg accagccact
     8821 cgccggaact ggcgaattta attgagaaac agagatcgtt ttcgctgtat cagctgtcga
     8881 tggtggaagg agaaacgaag gtggagaggc tggggtagtc tcc
//
LOCUS       DAJVUN010000159         8921 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.159, whole genome shotgun sequence.
ACCESSION   DAJVUN010000159 DAJVUN010000000
VERSION     DAJVUN010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.159"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            194..703
                     /locus_tag="OQQ76_003222"
     CDS             194..703
                     /locus_tag="OQQ76_003222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HCS1969614.1"
                     /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF
                     LAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGY
                     FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV
                     INLRHSGVL"
     gene            700..2118
                     /gene="phrB"
                     /locus_tag="OQQ76_003223"
     CDS             700..2118
                     /gene="phrB"
                     /locus_tag="OQQ76_003223"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HCS1969615.1"
                     /translation="MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT
                     HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFY
                     NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK
                     RLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN
                     GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL
                     IWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL
                     NSTGWMHNRLRMITASFQVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD
                     AAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQP
                     IVDHKEARLRTLAAYEEARKGA"
     gene            complement(2160..3641)
                     /gene="dtpD"
                     /locus_tag="OQQ76_003224"
     CDS             complement(2160..3641)
                     /gene="dtpD"
                     /locus_tag="OQQ76_003224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide permease DtpD"
                     /protein_id="HCS1969616.1"
                     /translation="MNKHASQPRAIYYVVALQIWEYFSFYSMRALLILYLTNQLKYND
                     THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF
                     LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY
                     AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV
                     LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF
                     NMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE
                     SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL
                     FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY
                     SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES"
     gene            3912..4655
                     /gene="ybgI"
                     /locus_tag="OQQ76_003225"
     CDS             3912..4655
                     /gene="ybgI"
                     /locus_tag="OQQ76_003225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radiation resistance protein YbgI"
                     /protein_id="HCS1969617.1"
                     /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA
                     SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA
                     HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT
                     GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT
                     ERGGIRALSEWLNENTDLDVTFIDIPNPA"
     gene            4678..5334
                     /gene="pxpB"
                     /locus_tag="OQQ76_003226"
     CDS             4678..5334
                     /gene="pxpB"
                     /locus_tag="OQQ76_003226"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HCS1969618.1"
                     /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDIPNVV
                     EAIPGMNNITVILRNPESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDL
                     AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
                     GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
                     "
     gene            5328..6260
                     /gene="pxpC"
                     /locus_tag="OQQ76_003227"
     CDS             5328..6260
                     /gene="pxpC"
                     /locus_tag="OQQ76_003227"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpC"
                     /protein_id="HCS1969619.1"
                     /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV
                     GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL
                     KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLNVGIGGLEGRLLKDGDRLPIGKSKRDFM
                     EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSPQSNRMGYRLQGQILKR
                     TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ
                     PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN"
     gene            6250..6984
                     /gene="pxpA"
                     /locus_tag="OQQ76_003228"
     CDS             6250..6984
                     /gene="pxpA"
                     /locus_tag="OQQ76_003228"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HCS1969620.1"
                     /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACV
                     REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH
                     VKPHGMLYNQTAKEAQLADAIARAVYACDPALVLVGLAGSELIRAGKQYGLTTREEVF
                     ADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQHGRVKSITGEWATVTAQTVCLH
                     GDGEHALAFARRLRSTFAEKEIVVAA"
     gene            7020..7811
                     /gene="nei"
                     /locus_tag="OQQ76_003229"
     CDS             7020..7811
                     /gene="nei"
                     /locus_tag="OQQ76_003229"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease VIII"
                     /protein_id="HCS1969621.1"
                     /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQH
                     VTHVGTRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL
                     LYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD
                     QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE
                     NKHHGALFRFKVFHRDGELCERCGGIIEKTTLSSRPFYWCPGCQH"
     gene            complement(7808..8854)
                     /locus_tag="OQQ76_003230"
     CDS             complement(7808..8854)
                     /locus_tag="OQQ76_003230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HCS1969622.1"
                     /translation="MPVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIFSMRG
                     ITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAANWPIVLAILLVTLLSSAIVGWLL
                     VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTCM
                     MLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCMLRLPSGTMLIPMLAGAVLQ
                     SGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQILLSIFALLAICAGM
                     AWGLTRFMHIDFMTAYLATSPDGLDTVAVIAAGSNADMALIMAMQTLRLFSILLTGPA
                     IARFISTYAPKRSA"
BASE COUNT         2197 a         2248 c         2484 g         1992 t
ORIGIN      
        1 ctttgagaac tgttattttc taaaaataaa aaatacaaaa aatgaatgca gctcgggaaa
       61 tagtagaata attctcgctc agatgaagtt gataatattt ttaccaacaa aatacttccc
      121 cgcaaaaact ctgccccata aaattcattt accatcgtct acacttactc ctttataccg
      181 ttcaggagca gtaatgaatc tacaacgatt tgatgacagc accctaatcc gtatctttgc
      241 ccttcatgag ttacatcgac tgaaagaaca tggcttaacg cgcggggcgc ttctcgatta
      301 tcacagccgc tataaactcg tctttctggc gcattctcag ccggagtacc gcaaacttgg
      361 cccgttcgtg gctgatattc accagtggca aaatctggat gactattaca accagtaccg
      421 ccaacgcgta gttgttttgc tttctcaccc cgccaacccg cgcgatcaca ccaatgtttt
      481 gatgcacgtt cagggttatt ttcgcccgca tattgattcc acagaacgcc agcagctggc
      541 tgcgcttatc gacagttatc gccgtggcga gcaaccactt cttgcgccgc tgatgcgtat
      601 caaacactat atggcgcttt atcctgacgc ctggctttca gggcagcgtt atttcgaact
      661 ttggccgcgt gtgattaact tgcgccattc aggagtttta tgactaccca tctggtctgg
      721 tttcgccagg atttacgttt gcacgataat ctcgcactgg ctgccgcctg ccgcaattcg
      781 tctgcacgcg tgctggcgtt gtatatcgct acaccacgcc agtgggcgac gcataacatg
      841 tcgccgcgtc aggctgaact tatcaatgct caactgaatg ggctacaaat agcgcttgcg
      901 gaaaaaggta ttcctttatt gttccgtgaa gtggatgact ttatcgccag tgtcgaaata
      961 gttaaacagg tgtgcgcgga aaacagcgtt acccacctgt tttataacta tcagtatgaa
     1021 gtgaatgagc gggcgcggga tgtggaagtt gaaagagcgc tgcgtaacgt ggtgtgtgaa
     1081 ggatttgatg acagcgtgat cctgccgcct ggcgcggtga tgaccggtaa tcacgagatg
     1141 tacaaagtct ttacgccttt taagaatgcc tggctgaaac ggctgcggga agggatgccg
     1201 gagtgcgtcg ctgcgccaaa agttcgtagt agcggatcga tagagccctc gccatccatt
     1261 acgctgaatt atcctcgtca gtctttcgat actgcgcatt tcccggtgga agaaaaagcg
     1321 gcgattgcgc aattacgcca gttttgccag aacggtgccg gagaatatga gcaacaacga
     1381 gattttccgg cagtggaagg caccagtcgt ttgtccgcca gcctagcaac gggcgggtta
     1441 tcgcctcgcc agtgtttgca tcgcttgttg gcggaacagc cgcaggcgct ggacggtggg
     1501 gccggtagtg tctggcttag tgagctgatc tggcgcgagt tctaccgtca tctgatgacg
     1561 tattacccct cgttgtgtaa acattgtccg tttattgcct ggacggatcg tgtgcagtgg
     1621 cagagcaatc ccgcacattt acaggcctgg caggaaggca aaacgggata cccgattgtc
     1681 gatgctgcca tgcgtcagct taacagcact ggctggatgc ataaccggct acggatgatt
     1741 acagccagtt ttcaggtgaa agatttgttg atcgactggc gcgaaggcga gcgatatttc
     1801 atgtcgcagc tgattgatgg tgatttggca gccaataacg gtggctggca gtgggccgct
     1861 tcaaccggaa ccgatgcagc gccgtatttt cgtattttca acccgacaac ccagggcgag
     1921 aaatttgacc gtgagggcga gtttattcgt cgatggttac cggagctgcg cgatgtacca
     1981 gggaaagcgg tgcatgagcc gtggaagtgg gcgcagaaag caggtgtgat gctggattat
     2041 ccgcaaccga tagttgatca caaagaggca aggctgcgaa cgctggcagc gtacgaagaa
     2101 gcgaggaaag gagcctgata aaacgcagcg agcgttttat caggtatggt gctggcctat
     2161 tatgactcca gcgccagcgc gcggtttctg aatttcagcg cctgatacag ccaaatcatc
     2221 agtaccagtc ctacacacgc cagtgcgccc caggtaattt gatcaaatac ttcaatatat
     2281 gcattgatgg agtagttgat cgccccggaa gcatcaaacg aagcctgcga tgtctgatcg
     2341 gcaatcacgc ccgcgagata gttcgcaatc gcgccggaaa gcagcatata aatgccggtt
     2401 aatacgccgg tcacaccggg gatttcaatg cgcgtaattt gcgacatggc aaccgggtcg
     2461 ataaacagtt ccgcaaagcc catcaccgcc aggcctaata ccatcagtgg cagagaagag
     2521 tgaccataca ttgcggacca gcgggcgctt aaggtcagaa tgcagaaccc ggcgctcatc
     2581 aggccgagac caagagcaaa ttttccccag atgcgcacgg tacgattacc tgcgacgctt
     2641 tctttaacca cccacgccag gaacacaccg cacagcataa ctgcgaaggc attaatcgac
     2701 tggaacatag cagtcggaac ggtataacca aacatatcgc ggttaacgaa gcggtcgata
     2761 taaaggctaa tcgagctgcc gccctgttgt gcgaaggccc agaacaacat attgaagaag
     2821 gtgagcgtca caatcagccc cagctcctta cgctgtttct ggttttctgc tttgcgataa
     2881 atttttgcca gtacacccag gccaataata gtcgcgacaa ttaaggcgta taccgaccac
     2941 tctttccaga acaatacggt aatcagcgca ggcgttgcca ccagcagaac cagcagccat
     3001 ccccagttag gcaggagaaa gtttgtcgca cgcagtactt ttttattaac gccgcgggta
     3061 tgtgtgaaat gacgattgcc acataagaaa atgaccagac ccgcgatcat acccaccgcc
     3121 gccaggccaa agcccatcgc ccagctgtac tcttcctggg cgtagccaca ggcaataggt
     3181 gcgataatag accccacgtt acccgctgca tacatcagcg agaaaccgcc atcacgacgc
     3241 ggatcggttg gctcatacag ctcgccgagc aggcaactga cattggattt aaacagacca
     3301 tagccacaaa cgattatcgc cagggacaga tagaggaatg acggatggat ctcactggca
     3361 cccaacacca catgaccgat cgccatcaat aacgccccca gcatcaccgc catgcgattg
     3421 ccgagaactt tatccgccaa aaagccaccg aggattggcg tgacatacac cagcgaacag
     3481 taggcgctaa ataactcgta ggcgtgagta tcgttgtatt ttagttgatt ggtgagatag
     3541 agaatcagca gggcacgcat gctgtaaaag ctaaaatatt cccagatttg cagcgcaacg
     3601 acatagtaaa tagcgcgcgg ctgagatgcg tgtttattca taataattcc acaattgacg
     3661 gcaacgtcac gtaatagttg cgcggcgtgc ttgtgtttcc ttaaagttaa aactttgata
     3721 cagatctgat tatttatgca atatgctgtc tgattgcata aatatacatt agctgaagcg
     3781 tgatgatata aacaatttgc gtcttttggc gtcgggtttg tttcttaata tgtcaaaaga
     3841 ttggctatcg acgaacaggc gaggtaacgc tatgttaacg gtgtagctat cagaatacgg
     3901 aaggcgcgaa gatgaaaaac accgaactgg aacaactgat taacgaaaaa ctgaacagcg
     3961 cggcgattag tgattacgcg ccgaatggtt tgcaggtgga aggcaaagag acggtgcaaa
     4021 aaattgttac cggtgtcacc gccagccagg ctttgctcga tgaggcagtg cgtctgggcg
     4081 cggatgcggt cattgtgcat catggctact tctggaaagg agagtctccg gtcattcgcg
     4141 gaatgaagcg taaccgttta aaaacgttgc tggcgaatga tatcaacctg tatggctggc
     4201 atttgccgct tgacgcacat cctgagctgg gcaataacgc acagctggcg gcgttactgg
     4261 ggatcacggt catgggcgaa attgagccgt tggtgccgtg gggagagctg accatgcctg
     4321 tgccgggact ggaactagcc tcctggattg aagcgcgtct gggacgtaag ccgttatggt
     4381 gtggcgatac cggacctgag gtggtccagc gcgtcgcctg gtgcacgggc ggcgggcaaa
     4441 gttttatcga tagcgccgcg cgttttggcg tggatgcttt tattactggc gaagtttctg
     4501 aacagaccat tcattcagcc cgcgagcagg gattgcattt ttatgctgca ggtcaccatg
     4561 ccactgaacg tggtggtatt cgcgcattga gcgagtggct gaatgaaaat accgatcttg
     4621 atgtgacctt tattgatatt cctaatcctg cataacgaat aatcagaggg atcgaaagtg
     4681 caacgagcgc gttgttatct gataggtgaa acggcggtag tgctggaact ggaaccgccg
     4741 gtgacgctgg ctagccagaa acggatctgg cgactggcgc agcgtctggt ggatataccg
     4801 aatgtggttg aagccattcc cggcatgaac aatatcacgg tgattttgcg taatcctgag
     4861 tcgctggcgc tggatgccat agagcgtttg caacgctggt gggaggagag cgaggccctg
     4921 gaacctgagt ctcgctttat tgaaattccg gtggtttacg gtggtgcagg cggaccggat
     4981 ttggcggtgg tcgcggcgca ttgcgggttg agcgaaaaac aggttgttga attgcactcc
     5041 tccgtggaat acgtggtctg gtttttaggt tttcaaccgg gcttcccgta tctcgggagt
     5101 ttgccggaac aactacacac gccacggcgc gctgaaccgc gcttgctcgt tccggcaggt
     5161 tctgtcggga tcggcgggcc gcagactggt gtttatccgc tggcaacgcc gggtggctgg
     5221 cagttgattg gtcatacctc actcagcctg tttgatccgg cgcgtgacga acccatctta
     5281 ttacgtccgg gagacagcgt gcgctttgta ccgcagaagg agggagtatg ctgaagatta
     5341 ttcgtgcggg catgtatacc actgtgcagg atggcggtcg tcacggtttt cgccagtcgg
     5401 gtatcagcca ctgcggcgca ctggatatgc ctgcgttacg cattgctaac ctgctggtgg
     5461 gtaatgacgc caatgccccc gcgctggaga tcacgctcgg tcagttaacg gttgagttcg
     5521 aaactgatgg gtggtttgct ctgacgggtg ccggttgcga agcgcggctg gatgataacg
     5581 ccgtctggac cggctggcgc ttgccgatga aagcaggcca gcgtttaacg cttaaacgcc
     5641 cgcagcacgg catgcgcagt tatctggcgg tcgcgggtgg tattgatgtt ccgccggtaa
     5701 tggggtcatg cagcaccgat ctcaacgtgg ggattggcgg gctggaaggc cgtttactga
     5761 aggatggtga ccgactcccg attggcaaat cgaagcgtga ttttatggaa gcgcagggcg
     5821 ttaaacagct gctgtggggc aaccgcattc gcgccttgcc ggggccggaa tatcatgagt
     5881 tcgatcgcgc ctcgcaggat gcattctggc gttcgccctg gcagcttagc ccgcaaagta
     5941 accgcatggg ctatcgctta caggggcaaa ttttaaaacg caccaccgat cgcgaactgt
     6001 tatctcacgg tttgttaccg ggtgtggtgc aggtgccgca taacgggcag ccgattgtgt
     6061 tgatgaacga cgcacagacc accggtggtt acccgcgtat tgcctgtatc attgaggctg
     6121 atatgtacca tctggcgcaa attccgctcg gtcagccgat tcattttgtc cagtgttcac
     6181 tggaagaggc actgaaagcg cggcaagatc aacaacgtta tttcgaacaa ttagcgtggc
     6241 ggctacacaa tgaaaattga cctgaacgcc gatctgggcg aaggctgcgc cagcgacgca
     6301 gagctattaa cgctggtttc ctctgccaat attgcttgtg gatttcatgc aggcgatgcc
     6361 caaaccatgc aggcttgcgt gcgtgaagca ataaaaaatg gtgtcgcgat tggcgctcac
     6421 ccgagttttc ccgacaggga aaattttggt cgcagcgcca tgcagctgcc gccagaaacc
     6481 gtttacgccc agacgctgta tcaaattggc gcgctggcaa cgattgcccg tgcgcaaggc
     6541 ggcgtaatgc gtcatgtcaa accgcacggc atgttgtaca accagacggc gaaagaagca
     6601 caactggcag acgccatcgc cagagcggta tacgcttgcg atccagcatt ggttctcgtt
     6661 gggctggcag gaagcgagct gattcgtgca ggcaagcaat atggcctgac aacgcgcgag
     6721 gaagtgtttg ccgatcgcgg ttatcaggct gacggctcgc tggtgccgcg aagtcagcca
     6781 ggcgcgttga ttgaaaacga agaacaggcg ctggcgcaaa cgctagagat ggtgcaacac
     6841 ggcagagtca aaagtatcac cggcgaatgg gcaacggtca cggcgcaaac agtctgcctg
     6901 catggcgacg gcgagcacgc actggcgttc gcccgccgac tacgctctac atttgccgaa
     6961 aaggagattg ttgtcgcagc ataaccccga ttaataaaga atgaaaaaag gatatcacca
     7021 tgcctgaagg cccggagatc cgccgtgcag cggataacct ggaggcggcg atcaaaggca
     7081 aaccactaac tgatgtctgg tttgccttcc cgcagttaaa aacttatcaa tcacaactta
     7141 tcggtcaaca cgttacccat gtgggaacgc gtggtaaggc gttgttaact catttttcca
     7201 acgacttaac gctctacagc cataatcagc tttacggcgt ctggcgcgtg gttgataccg
     7261 gcgaagagcc gcagaccacg cgagtattgc gggtaaaact gcaaacggct gacaaaacca
     7321 ttctgcttta tagcgcctcg gatattgaga tgttgaggcc ggaacaactg accacgcatc
     7381 cgtttttaca acgcgttggt cccgatgtgc tggatccgaa tctgacgccg gaggtggtaa
     7441 aggaacggtt attgtcaccg cgctttcgta accgtcagtt tgcaggatta ctgctcgatc
     7501 aggcgtttct ggctgggctt ggcaattatt tgcgggtgga gatcctctgg caggttgggt
     7561 tgactggaaa tcataaagcg aaagatctca atgcggcgca actggatgca ctcgcacacg
     7621 cgttactgga gattcctcgg ttttcttacg ctacgcgggg gcaggtggat gagaataagc
     7681 atcatggggc gctgtttcgc tttaaggttt ttcatcgtga tggcgaactg tgcgaacgct
     7741 gtggcggcat cattgagaaa accacgttgt cctcgcgccc gttttactgg tgtccaggct
     7801 gccagcacta ggccgaccgc ttcggcgcat aggttgaaat aaaccgcgca atggctggcc
     7861 ccgtcagcaa aatactgaac aggcgcaggg tttgcatcgc cataataagc gccatatcgg
     7921 cattgctccc tgcggcgatg accgccacgg tatcaagccc gtcgggactg gtggcgaggt
     7981 aggcagtcat aaaatcaata tgcataaacc gggtcagtcc ccacgccata cctgcacaaa
     8041 tagctagcag agcaaaaatc gacagcagga tttgcggtag tgggcgtagt gcccgcagta
     8101 agatttgttt atcgaaacca agaccaatcc gccagccaat tgccatatac gccatcgcca
     8161 gcagccattc cggtagttcg atggtgatga gctgaccaga ctggagcact gcgcccgcca
     8221 gcatcgggat gagcatcgtg ccggaaggaa gacgcagcat gcatcccgcc gtaccggcaa
     8281 cgactgcgag caaaatcgta agcaggagat taatgctcac tggcgggaac cagacgattt
     8341 gctggttaac cgcttcagcg ttatcaccca gcatcatgca ggtgaccaga acagcggccc
     8401 ccgcgacgaa cagcactcgc agatattgca taaacgccac caggcgaata tctgcgccgt
     8461 aatcttgcgc catagcgacc attgccgctg cgccgcctgg agaagaaccc caggcaccgg
     8521 tatttccagg cagtgagcta tagcgcacca ataaccaacc cacgatggcg ctggaaagca
     8581 gcgtcaccag taaaatagca agcacgatcg gccagttggc ggccagcgtg gtgagaatcg
     8641 aaccagtgag gttttgcgca atcatgcagc caagaatggc ctgcgcggcg agaaaagcgg
     8701 agcggggaag ttgcagagta attccgcgca tactgaagat gatcccggcg atcatcggcc
     8761 caagtaatag cgccgccggg agatgtaccg cgaggaaacc aatagaaagg agaagtgata
     8821 gcacacataa cattccccac tgcaaaactg gcatccttcg ctccctcatt attttctctt
     8881 tggtgtatcg atacagcata aagaaagccg ggccaggaaa a
//
LOCUS       DAJVUN010000160         8889 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.160, whole genome shotgun sequence.
ACCESSION   DAJVUN010000160 DAJVUN010000000
VERSION     DAJVUN010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8889
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.160"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..558
                     /locus_tag="OQQ76_003231"
                     /pseudo
     CDS             1..558
                     /locus_tag="OQQ76_003231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            671..874
                     /locus_tag="OQQ76_003232"
     CDS             671..874
                     /locus_tag="OQQ76_003232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HCS1969623.1"
                     /translation="MNIDTIPTKGYIRRFRLAELLGVSVSTIDRKVRNGSLPRPVKLG
                     EKITAFDAVEIHNWLAERRGKVA"
     gene            874..1305
                     /locus_tag="OQQ76_003233"
     CDS             874..1305
                     /locus_tag="OQQ76_003233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001437021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969624.1"
                     /translation="MEKKNRPLQAANSDIRVSDVTPLTKSLQAPKRTPKKHRARVYML
                     RTGIEGWTENDILRYCRLSSGRNYASELERRLDIQLERIDEKNPDGIGPHLRYRFTGR
                     GDVLKVIRLVNHNADAGGYQGLSQPEIADILNLYPDNLTAA"
     gene            1319..2128
                     /locus_tag="OQQ76_003234"
                     /pseudo
     CDS             1319..2128
                     /locus_tag="OQQ76_003234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244012.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
     gene            2121..2303
                     /locus_tag="OQQ76_003235"
     CDS             2121..2303
                     /locus_tag="OQQ76_003235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001244025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HCS1969625.1"
                     /translation="MRNHNPMPGSRYKDSHGAVVTVERVEHNRVTFYREGYQSPCVQP
                     LERFVNEFVEVRRDTE"
     gene            2290..2997
                     /locus_tag="OQQ76_003236"
     CDS             2290..2997
                     /locus_tag="OQQ76_003236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HCS1969626.1"
                     /translation="MILNEPAAQKEAFNLAGLLTNVNPYNLIKPDIDTAAPGVPLPVR
                     EALTLNKKMVSRAQEKLLKGYGFIWYDHLAEKSCYSPSVAAKSATGRGNPNTLRATQT
                     PKASFFVSDHYAHQISGLVRTVSMVALVGLRSRRPVSFVSGISTPANVTAISERGNSG
                     GDSLNTKEAAAMLATTPTQKPQFIWIIAAVRRDCPTITAKIHHIAAESERDARRSLVR
                     DHVCFFAGRIRMEVAHD"
     gene            2990..3208
                     /locus_tag="OQQ76_003237"
     CDS             2990..3208
                     /locus_tag="OQQ76_003237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000598361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969627.1"
                     /translation="MIKTYDVHMDPLERTSQIITLTEVINDILVSNSPSRDEKLKALL
                     AILDLAVRDVHFLLEGGEMSGKRGATNE"
     gene            3201..3395
                     /locus_tag="OQQ76_003238"
     CDS             3201..3395
                     /locus_tag="OQQ76_003238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001065662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969628.1"
                     /translation="MNNSINTPRLTSALQLIEQTAAVLVAVSLSAEEMDAADVVDAIK
                     ACSSLVNDARAELVILGGEK"
     gene            3392..3655
                     /locus_tag="OQQ76_003239"
     CDS             3392..3655
                     /locus_tag="OQQ76_003239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001468267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinic acetylcholine receptor subunit beta"
                     /protein_id="HCS1969629.1"
                     /translation="MNINLIYRHPCELEIESLLGREEPYPDTFTPADCATERLTRART
                     GLVHVMNEIVPSVGGEQATVINSWLQKVTSLIDISLIDVESAK"
     gene            3652..3873
                     /locus_tag="OQQ76_003240"
     CDS             3652..3873
                     /locus_tag="OQQ76_003240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000181940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969630.1"
                     /translation="MTNIQLIEAQCRIEQVQTVLGFWLEGASPSNRDKLMIGAVMSLL
                     NGVPEAIQEADELLGKYELQNHSGEAKHE"
     gene            3866..4468
                     /locus_tag="OQQ76_003241"
     CDS             3866..4468
                     /locus_tag="OQQ76_003241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969631.1"
                     /translation="MNNFLTFHAEATPGGVNIMYRSNDGMTERVETVSYIDAVNRLDA
                     GDYDDKPDEGMFIHLAIASGGNQGYFDYTSQHHVIMWRWLIATVFMLEMREENGTVSI
                     IDDTGNPSEVAVYSNGIVAMPLYPVAERLAMANNIEGAMIERFGIESGTERAIIFYRA
                     MMDVEQGALTPFGRETLAELHNSFIAELNENGWPEMALAH"
     gene            4477..4818
                     /locus_tag="OQQ76_003242"
     CDS             4477..4818
                     /locus_tag="OQQ76_003242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000628964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969632.1"
                     /translation="MITKNFRLNALANKYAAALYNHITSTSGGDYFMIDADGLAVRVE
                     IVNGVKGVRSLIDSYALAAMKVRYPQWEIVGIELLDRCVTKDGLTDIGREIWQSMIND
                     MGATVAGGNHA"
     gene            4811..7570
                     /locus_tag="OQQ76_003243"
     CDS             4811..7570
                     /locus_tag="OQQ76_003243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004866290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF927 domain-containing protein"
                     /protein_id="HCS1969633.1"
                     /translation="MRNIDLIREVTSAAAGRWPYVLAELSIDVPDSSRRHSPCPACGG
                     KDRFRFDDNGRGSFICNQCGAGDGLDLIKRVNNCDTTEAAQLAADVLGIDYRAAQTDP
                     AAASHRREQLEADRQQREQERQKQAAEDAEQRRATFAHLYAGMRQSATQGESDYLQSK
                     GLTGFNYPVMPDGSLLLELVDESGAVAAAQTITPQGEKRLLTGSAKRGAYHAVNAPES
                     PQSVLIAEGLATALSVHLMRPDALAVAAIDAGNLLPVAEVMRRIYPATQIIIAADNDH
                     QQDDQANTGKDAAEKAALSVAGWVALPPTDYKADWDDYRQQNGLEVATAAFNDSMYQI
                     QGEAVKPRLQAIEGGKTDHPEKDPLKPHIESRKDGVFWVTPKVDKESGEIVNAESWLC
                     SPLEVIGTGRDDKDQYLIISWLAFGAGIPTTAAIPLADIGEREGWRTLKAGGVNVTTK
                     SSLRAILADWLQRSGSRELWRVAHATGWQCGAYIMPDGEIIGTPERPVLFSGRSSAAA
                     GYTVAGTPESWRNSVARLAYGNYAMMTGIAAALAAPLIGVAERDGFGIHFYEQSSAGK
                     TTTQNVASSLYGNPDALRLTWYGTALGMINEAAAHNDGLMPLDEVGQGADPISVSQSA
                     YALFNGVGKLQGAKEGGNRDLKRWRTVAISTGEMDLETFIASAGRKTKAGQLVRLLNI
                     PLSKAVRFHEHQTGKDHADALKSAWQSNHGAAGREWIRWLAGHQQQAIDTVRDCEARW
                     RSLIPADYGEQVHRVGARFAILEAALLLGGVVTGWDDQTCRDAIQHSYNAWLREFGTG
                     NKEHQQIIEQTEAFLNAYGLSRFAPLGYDPRDLPIRDLAGYRKKGNHDGDPIIFYTFP
                     AAFEQEIAKGFNTKQFAEVLKNAGMLTPPTSGRGYQGRVREDGRQIRVYVLNFMAEES
                     SQPEE"
     gene            7945..8379
                     /locus_tag="OQQ76_003244"
     CDS             7945..8379
                     /locus_tag="OQQ76_003244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000126714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCS1969634.1"
                     /translation="MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGE
                     STFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISA
                     RTVRPGGKAGQRGQATDALRRAQQPSRDEYDQRPPFDDETPF"
     gene            8390..>8889
                     /locus_tag="OQQ76_003245"
     CDS             8390..>8889
                     /locus_tag="OQQ76_003245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969635.1"
                     /translation="MSTQPIIIEFGSYRWPRHLAIHEAGHAIAAWFFGIQEVEIALSG
                     NNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVIS
                     LAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL
                     IALKWW"
BASE COUNT         2356 a         2176 c         2488 g         1869 t
ORIGIN      
        1 tgggctatgg catgttaacg cctcctatat actcgacatc gcagggcttg attctattga
       61 cactcccgca cgcatattca gccccgcaca cagaaaaaga gaactagacg taagtgcgaa
      121 ttattatttt ttctcgatta tacaaaacat gccttccacg aaatatccgt agaggatttg
      181 tacataacaa ggccgtgggt tgaatatatc ggcgaatgca tggacaaaaa ccagcccata
      241 tacagccccg aaactcgcat aaacttacaa gctctttatg aggatgttaa aaacgttgag
      301 cacggaaaca gagagcgcca caggcaaaag cgcgaaattt gcctcttggc gttgatttat
      361 gtgaagcggc actacccaga agagtgtaaa gggaagaacg ggaaggaaac caacgaagca
      421 tgggcgaacg ccacaataaa ccactgggcg cttttggggg gcggctatga tgagccatcc
      481 atagattacc tgaagaaact catagccgac gcagacagaa caccggaaga acgcaccacg
      541 gcagggaaaa aaaggtgata gtaaatttta ctatcacgat agtaaaaaat acgatcattc
      601 ctttttgagc gtgcacgcca ttaaatcccc gtaacgaagc aacaactatc gctaagaggt
      661 tacgggaatc atgaacatcg acactatccc tacaaaaggc tatatcagac gcttccgcct
      721 ggctgaattg ctgggcgtta gtgtatccac catcgaccgt aaagtaagaa acggttcact
      781 accacgtccg gtaaagctgg gagaaaaaat aactgcgttt gatgcggttg agattcacaa
      841 ctggctggca gaacgccgcg ggaaggtggc ctgatggaaa agaaaaaccg cccattacag
      901 gcggctaatt cagatattcg cgtatctgat gttacgcccc ttacaaaatc ccttcaagca
      961 ccaaagcgca caccgaaaaa gcatcgtgcc agagtctata tgctgcgtac tggtatagag
     1021 ggatggacag aaaatgacat tctgcgttat tgccgccttt cgtctggaag gaactacgcc
     1081 agcgagttag agcgcaggct tgatattcag cttgagcgta tagacgaaaa gaaccccgac
     1141 gggatagggc cacatttacg ctatcgcttt accgggcgcg gtgacgttct aaaagttatt
     1201 cggcttgtga accataacgc cgacgctggc ggctatcagg gactttctca gcctgaaatt
     1261 gccgacattc tcaatctata cccggacaat ctcaccgccg cataacggag ccgaaaatat
     1321 gactatcgaa aaaagccgat tcagttcggg ggccgccccg caacccaacg ttaacacggg
     1381 agtaattaac ggcaacgact ttgccgctat tgttcccgtt attgccggac gcattggcgg
     1441 gcgtgaagcc aatattgtga gcgctaaggc gttgcataaa gcgctggggg tgggccgcga
     1501 ctttactaac tggattaaag gccgaattga ccagtacggt tttattgccg gaaccgattt
     1561 tatccgtgtt gaaaatttga gcacgccaaa acgggcgagc gcaaaaactc gccagcaaat
     1621 agagcatgat tacctgctat cgctggatat ggctaaagaa gtggcaatgg ttgaacgcaa
     1681 cgagcagggc cgcgctatcc gccgttattt catccagtgc gaggaagaat tacagcgtag
     1741 cgtgcctgaa atcgccgccc gctatcgtcg ccagctaaaa gcccgtctca gtgccgcaaa
     1801 caactttaag ccaatgtgcg atgcgctgaa tatggcccgt gccgagatgg gcaaaacgac
     1861 gcagcagcgc cactacagca acgagagcaa catgatcgcc cgtatcgtgc tgggtggcat
     1921 gacggcgaag cagtgagcgc aggcaaatgg cattactggc gaaccacggg acagcatgaa
     1981 cgcagcacag cttgaacacc tcgcctatct cgaaagcacc aatatcacgt taattgatat
     2041 gggcatggaa tatgagcagc gcaaaggaga actcacccgc ctgtcgcaac gctggctcgc
     2101 taaacgtctg gaggtaaacc atgcgtaacc acaatccgat gccgggaagc cgttacaagg
     2161 attcgcacgg ggctgtagtg accgttgagc gcgtcgagca taaccgagtg accttttacc
     2221 gcgagggcta tcagtcgcca tgtgttcagc ctttggagag attcgttaat gagttcgtgg
     2281 aggtgcgccg tgatactgaa tgaacctgcc gcccagaaag aagcctttaa tctggctggc
     2341 ctgttaacaa atgttaaccc ttacaacctt ataaaacctg atattgatac cgcagcgccc
     2401 ggagttccgt taccagtacg cgaggcgctt accctcaaca aaaagatggt gagccgtgca
     2461 caggaaaaac tcttaaaggg ttacggtttt atctggtatg accacctagc agagaaaagc
     2521 tgttatagtc caagcgttgc tgcaaaatca gcaaccgggc gtggaaaccc gaacacactc
     2581 agggcgacac agacgccgaa agcgtctttt tttgtgtccg atcactacgc acatcaaatc
     2641 agcggcctag tccgtactgt atcaatggtg gcgttagtgg ggctacgttc gcgtaggccg
     2701 gtttcctttg tgtccggtat ttccacccct gctaacgtca ccgccatttc agagcgtgga
     2761 aactcaggcg gtgactcctt aaacacaaag gaggctgccg ctatgctggc tactacccct
     2821 acccaaaaac cgcaatttat ctggattatc gccgcagttc gccgcgattg cccgacaatt
     2881 accgccaaaa ttcatcatat tgctgccgag tctgaacgcg atgctcgccg ttctctggtg
     2941 cgcgatcacg tctgcttttt tgctggtcgt atccgcatgg aggtggcaca tgattaaaac
     3001 ctacgatgtg catatggatc ccctcgaacg cacaagccag atcatcacac tgacagaagt
     3061 gattaatgac attctggtga gcaactctcc ctcacgagac gaaaaactga aggcgttact
     3121 cgcgatattg gatctcgccg ttcgtgacgt tcatttcctg ctggaaggtg gcgaaatgtc
     3181 aggaaaacgg ggggcaacca atgaataact caattaatac ccctcgcctt acgtccgcac
     3241 ttcaattaat cgagcaaaca gcggctgtcc tggttgctgt cagtctttcg gctgaagaaa
     3301 tggacgctgc tgatgtcgtg gatgcgatta aagcgtgctc atctttggtt aacgatgccc
     3361 gtgcagagct ggtaattctt gggggtgaaa aatgaatatc aacttaattt atcgtcatcc
     3421 gtgtgagctg gaaattgaat cattgctggg gcgcgaagag ccatatccag acacattcac
     3481 tcccgcagat tgcgcgactg aacggcttac cagagcgcgc acaggtctgg ttcatgtgat
     3541 gaatgagatt gttccctcgg tgggagggga acaggcgaca gtaatcaata gctggctaca
     3601 aaaagttacc tccctgatag atatcagttt aatcgatgtg gagagtgcga aatgaccaac
     3661 atccagctca ttgaagcgca atgtcgcatc gaacaggttc agactgtttt agggttctgg
     3721 cttgaagggg ccagccccag caacagagac aagttaatga ttggcgcggt tatgtcactg
     3781 ctcaatggcg taccagaagc tattcaggaa gctgacgaat tgttgggcaa atatgagtta
     3841 cagaatcatt caggcgaggc gaaacatgaa taatttctta acgttccatg cagaagcaac
     3901 gcctggcggc gtaaacatca tgtaccgcag caacgatggc atgacagaac gcgttgagac
     3961 cgtctcatat attgatgccg taaatcgtct ggatgccggg gattatgacg ataaaccaga
     4021 tgaaggcatg tttatacatc tcgctattgc cagtggcggc aaccagggat atttcgatta
     4081 cacatcacag catcacgtga ttatgtggcg ctggctgatc gcaacagtat tcatgctgga
     4141 aatgagagag gaaaacggca ctgtcagcat cattgatgat actggcaatc cttccgaagt
     4201 ggctgtttat tccaacggca tcgtcgccat gccgctgtat ccagtagcag agcgcctcgc
     4261 tatggcaaac aacattgagg gcgcgatgat agaacgtttt ggcatcgagt ctggcacaga
     4321 acgcgccatc attttctaca gagccatgat ggatgtggaa caaggagcac tgactccatt
     4381 tggtcgtgaa acgcttgctg aacttcacaa cagctttata gctgaactga atgaaaacgg
     4441 ctggcctgaa atggcgctgg cgcactgagg ggcgacatga ttactaaaaa tttccgactg
     4501 aatgcgctgg cgaataagta tgcggcagca ctgtataacc acattacttc caccagcggc
     4561 ggggactatt tcatgattga tgcggacggc ctcgccgtcc gtgtggaaat cgtcaatgga
     4621 gtaaaaggcg ttcgcagcct gattgatagc tacgcactgg cagccatgaa agtgcgctac
     4681 ccgcagtggg aaatcgtggg gatcgagctt cttgatcgtt gcgtcactaa ggacggattg
     4741 actgacatcg ggcgcgagat atggcaaagc atgattaatg atatgggcgc gaccgtggca
     4801 ggaggcaacc atgcgtaata tcgaccttat ccgcgaagtg accagcgccg cagcagggcg
     4861 ctggccttat gtgctggctg aattgtctat cgacgtgcct gattcatcgc gccgccattc
     4921 tccatgccct gcatgtggtg gaaaagaccg tttcagattc gacgacaacg ggcgcggtag
     4981 ctttatctgc aaccagtgtg gcgctggtga cgggctggat ttaatcaagc gggtaaacaa
     5041 ctgcgacacc acggaggcgg cacagcttgc cgctgacgtg ctgggtattg attaccgggc
     5101 agcgcaaacc gacccggcgg cagcgagcca tagaagagag caactggaag ctgaccgcca
     5161 gcagcgtgag caggagcgcc agaaacaggc agcagaggac gcagagcagc gaagggctac
     5221 gtttgcccat ctgtatgccg gaatgcgcca gagtgccaca cagggcgaat ctgattacct
     5281 gcaatcaaaa gggctgaccg ggtttaacta tccggttatg ccggatggtt cgttattgct
     5341 ggagctggtg gacgaatccg gcgcagtggc agcagcgcaa accattacac cgcagggaga
     5401 gaagcgactc ctgacaggtt cagcaaagcg cggggcatat cacgccgtaa acgcgccaga
     5461 atcgccgcag agcgttttaa ttgccgaggg gctggcgacg gccctttcag ttcacctgat
     5521 gcgcccggac gcgctggcag tggcagcaat tgacgcgggc aacctgctac ccgttgccga
     5581 agtgatgcgc cggatatatc cagccacgca gattatcatt gccgcagata acgaccacca
     5641 gcaggacgac caggcgaaca cgggcaaaga tgccgcagag aaagccgcct tatccgtggc
     5701 tggctgggtg gcgctgccgc cgacagacta caaagccgac tgggacgatt accgccagca
     5761 aaacgggctg gaagtcgcta cggctgcgtt taacgattcg atgtaccaga ttcaagggga
     5821 agccgtgaaa ccgcgattgc aagccattga gggcggtaaa actgaccatc cagagaaaga
     5881 tccactaaaa ccccacattg agagccgcaa agatggcgtt ttctgggtaa cgccgaaggt
     5941 ggacaaggaa agcggggaga tcgtcaacgc tgaaagctgg ttatgttccc cgttggaggt
     6001 tatcggcacg ggacgcgacg acaaagatca gtatcttatt atctcatggc tggcattcgg
     6061 tgcaggcata ccgacaacag cggctatccc gctggctgat attggcgagc gtgaaggctg
     6121 gcgcaccctg aaagctggtg gggttaacgt cacgaccaaa agcagtttac gggcgatcct
     6181 tgccgactgg ctacagcgga gcggctcgcg tgaattgtgg cgcgttgctc atgctacagg
     6241 ctggcagtgc ggggcataca tcatgccgga cggggaaatc atcggcacac ctgagcggcc
     6301 tgttttgttc agcgggcgca gttcagccgc tgccgggtat accgtagcag gaacgccgga
     6361 aagctggcgc aacagtgtcg cgcggctggc atacggcaac tacgcgatga tgacaggcat
     6421 tgccgcagca ctggcagcgc cattaatcgg ggtggcagag cgtgacggat tcgggattca
     6481 tttttatgag caatcgagcg ccgggaaaac aaccacgcag aacgtggcta gcagtctata
     6541 cgggaaccct gatgccttgc gcctgacgtg gtacgggacg gcgctgggga tgataaacga
     6601 ggccgccgcc cacaatgacg gactgatgcc gctggatgaa gtcggacagg gcgcagaccc
     6661 gataagcgtt tctcagtctg cctatgccct gtttaacggc gtagggaaat tgcagggcgc
     6721 gaaagaaggc ggaaatcggg atctaaaacg ctggcgtacc gtggcaatca gcaccgggga
     6781 aatggattta gaaacgttca ttgcctccgc aggacgcaag acaaaagcgg ggcaactggt
     6841 gcgcctgctg aatatcccgt taagtaaggc ggtgcgcttt catgagcacc agacagggaa
     6901 agaccatgca gacgcattaa aatccgcgtg gcagagcaat cacggcgctg ccgggcggga
     6961 gtggatcaga tggcttgcag gccaccagca gcaggccatt gataccgttc gtgactgtga
     7021 agcccgctgg cgcagtctta ttcctgccga ctatggggaa caggttcacc gtgtaggggc
     7081 aaggttcgcc attctggagg ctgctttact gctgggtggc gtggttactg gctgggatga
     7141 tcaaacgtgc cgtgatgcga tacagcacag ctacaatgcg tggttgcgtg agttcggcac
     7201 ggggaacaaa gagcaccagc agattattga gcagacggag gcgtttttga atgcctatgg
     7261 gctgagtcga ttcgcgccgc tgggttatga cccgcgcgat ttacccatcc gtgatttagc
     7321 cgggtacagg aagaagggga accacgacgg cgacccgata attttctaca ccttcccggc
     7381 agcgtttgag caggagattg caaagggctt caataccaaa cagtttgccg aagttctaaa
     7441 gaatgcagga atgcttacac caccaacgag cgggcgaggc tatcaggggc gagtaaggga
     7501 ggatgggcga cagattcgcg tctatgtact caatttcatg gcagaggaaa gcagccagcc
     7561 agaagaataa ttatttcttc acatgcgtag ttttagtgtt gtctcggttg tctttgttgt
     7621 ctcaatttgt aattgagatt gatttataag gattttattt taatttctga gacaacaccg
     7681 agacaacatt tagccatttt gagacaacag ggcgaaagtg tgtttttagt ctggcaggca
     7741 gtgagacaac atttatgccg ggtgagacaa cacgaaattg caaatgttgt ctcagcaaaa
     7801 cccagacgtg gcgcggcctg tagagccgtg agacaacaaa gacaacagag acaacactat
     7861 ttttgcttac tatgaaaaaa aatcggcagg tgtcccacat taagaaatcg tcattagcaa
     7921 aactaataat ccagtgaggg gaaaatgaca gcacaaattt cagcatacgg gcggctggtg
     7981 gcagatcccc agacccgcac cacaacgaac ggtaacaaca tggctatggc gcggctggcg
     8041 gtgtctctcc cctgtaatgc ggcagaggcg ggagagtcaa ccttctggct gggcgttatt
     8101 gcttttggga agcaggccga tgcgctggca aagcaccaga aaggcgacct tgtgagcgtg
     8161 gcaggcaata tgcaactcaa ccagtggaca gggcaggacg gcggtacaca gcaggggtat
     8221 caggtagtag ccgacagtgt gatcagcgcc agaacggtac gccccggcgg gaaggcagga
     8281 cagcggggac aggcaacgga cgcgctgaga cgtgcgcagc agccatcccg tgatgaatac
     8341 gaccaacgcc caccattcga cgatgaaacg ccattctgag agggaagata tgagtacgca
     8401 acccatcatt attgagttcg gcagctatcg ctggcccaga catcttgcaa tacatgaagc
     8461 aggtcatgcg atagccgcat ggtttttcgg catacaggag gtagaaattg cgttatcggg
     8521 taataaccga gtggcaaaaa cctaccttag cggcgatgtt gatgaatgtg gagctgtcgc
     8581 ggtatggcac gccaactatc cacggaatgt ggctgaggtt aagtcttaca ccctctcgaa
     8641 tgatgacacc aggttacgtc tgatagacca ggtatgccgg gctatggtta tctctctggc
     8701 tggtatcgtc gcgcaatcac gctatacggg ggatgatatt aacgcactga tggaaacgtc
     8761 cgggaaagca gacatgaaaa atgttcgtga tttatcagag gtataccggg tggctggtgg
     8821 ggaggatgct gatatacaga gaatatccct ttcccgtgct gaggcgctga ttgccctgaa
     8881 atggtggga
//
LOCUS       DAJVUN010000161         8819 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.161, whole genome shotgun sequence.
ACCESSION   DAJVUN010000161 DAJVUN010000000
VERSION     DAJVUN010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8819
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.161"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..162
                     /locus_tag="OQQ76_003246"
     CDS             <1..162
                     /locus_tag="OQQ76_003246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1969636.1"
                     /translation="PSAHKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVK
                     KHCEIWAGD"
     gene            228..476
                     /locus_tag="OQQ76_003247"
     CDS             228..476
                     /locus_tag="OQQ76_003247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1158 domain-containing protein"
                     /protein_id="HCS1969637.1"
                     /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLTLAQKLVTMFHL
                     MDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD"
     gene            541..909
                     /locus_tag="OQQ76_003248"
     CDS             541..909
                     /locus_tag="OQQ76_003248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1969638.1"
                     /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS
                     ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLIND
                     SWNLVVDGLAKRDQKRVRLG"
     gene            1003..1656
                     /gene="nfsB"
                     /locus_tag="OQQ76_003249"
     CDS             1003..1656
                     /gene="nfsB"
                     /locus_tag="OQQ76_003249"
                     /EC_number="1.5.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NAD(P)H nitroreductase"
                     /protein_id="HCS1969639.1"
                     /translation="MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQ
                     PWHFIVASTEEGKARVAKSAAGNYVFNERKILDASHVVVFCAKTAMVDAWLKLVVDQE
                     DADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLD
                     AVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV"
     gene            1764..3011
                     /gene="ybdG"
                     /locus_tag="OQQ76_003250"
     CDS             1764..3011
                     /gene="ybdG"
                     /locus_tag="OQQ76_003250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel YbdG"
                     /protein_id="HCS1969640.1"
                     /translation="MQDLISQVGDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV
                     LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC
                     AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
                     IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGA
                     VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF
                     LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESILNLRRMTNIGTFRAYLNEY
                     LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE
                     FGLRLHQSPAGNDIRSLAGAFKQ"
     gene            complement(3079..4455)
                     /gene="pheP"
                     /locus_tag="OQQ76_003251"
     CDS             complement(3079..4455)
                     /gene="pheP"
                     /locus_tag="OQQ76_003251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine transporter"
                     /protein_id="HCS1969641.1"
                     /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG
                     IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL
                     SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET
                     EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWCYGGFFATGWNGLILSLAVI
                     MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSN
                     SSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR
                     VSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF
                     RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFV
                     AFKTLRRK"
     gene            complement(4557..7700)
                     /gene="cusA"
                     /locus_tag="OQQ76_003252"
                     /pseudo
     CDS             complement(4557..7700)
                     /gene="cusA"
                     /locus_tag="OQQ76_003252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415107.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter permease
                     subunit CusA"
     gene            complement(7712..>8819)
                     /gene="cusB"
                     /locus_tag="OQQ76_003253"
     CDS             complement(7712..>8819)
                     /gene="cusB"
                     /locus_tag="OQQ76_003253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter periplasmic
                     adaptor subunit CusB"
                     /protein_id="HCS1969642.1"
                     /translation="RKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVR
                     IDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVG
                     DKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI
                     ATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWL
                     VKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATCTLQLRLEVDNADEALKPGMNAWL
                     QLNTASEPMLLIPSQGLIDTGSEQRVITIDADGRFVPKRVAVFQASQGVTALRSGLAE
                     GEKVVSSGLFLIDSEANISGALERMRSESATHAH"
BASE COUNT         2118 a         2466 c         2178 g         2057 t
ORIGIN      
        1 ccttccgcac ataaaattgg tgcatcgagc gcgattgagg ccctgcatcg ccaggtcgtc
       61 agcggtctga atgaagcgca gctgatgcgc gatttcgtcg ccgatggtgg ctcgctgatt
      121 gggctggtga aaaagcattg tgagatctgg gccggtgact aagtagggaa ttgccttaca
      181 gaagaatatc cctgacaatg gtgttttaac ttacatttaa caatgttatg aaacaccctt
      241 tagaaacctt gactaccgca gcaggcattt tgctgatggc tttcctctct tgcctgctgc
      301 tgcccgcccc cgcactgggg ctgacgctgg cacaaaaact ggtgaccatg ttccatctga
      361 tggatcttag ccagctttac actttattgt tttgtctgtg gtttttagtg ctgggcgcta
      421 ttgagtattt tgttctgcgc tttatctggc gacgctggtt ctcgctggcg gattaaacgt
      481 cgattatcgc cgtacttcgc ggcatacttt gcttattctc cttcgcctaa aggaacgttt
      541 atggataagc aatcactgca cgaaacggcg aaacgcctgg cccttgagtt accctttgtc
      601 gagctttgct ggccttttgg cccggagttc gatgttttta aaattggcgg caaaattttt
      661 atgctgtcgt cggagctgcg cggcgtcccc tttatcaatc tgaagtccga tccacaaaaa
      721 tccctgttaa atcagcagat atacccgagc attaagccag ggtatcacat gaataaaaag
      781 cactggattt cggtgtatcc cggcgaggaa atctccgaag cgttacttcg cgatctgatc
      841 aacgattcgt ggaatctggt ggttgatggt ctggctaaac gcgatcaaaa aagagtgcgt
      901 ctaggctaaa gcggaaatct atagcgcatt tttctcgctt accatttctc gttgaaccct
      961 gtaatctgct ggcacgcaaa attactttca catggagtct ttatggatat catttctgtc
     1021 gccttaaagc gtcattccac taaggcattt gatgccagta aaaaacttac cccggaacag
     1081 gccgagcaga tcaaaactct cctgcaatac agcccatcca gcaccaactc ccagccgtgg
     1141 cattttattg ttgccagcac ggaagaaggt aaagcgcgtg ttgccaaatc cgctgccggt
     1201 aattatgtgt tcaacgaacg taaaatactt gatgcctcgc acgtcgtggt gttctgtgca
     1261 aaaaccgcga tggtcgatgc ctggctgaag ctggttgttg accaggaaga tgctgatggc
     1321 cgctttgcca cgccggaagc gaaagccgcg aacgataaag gtcgcaagtt cttcgctgat
     1381 atgcaccgta aagatctgca tgatgatgca gagtggatgg caaaacaggt ttatctcaac
     1441 gtcggtaact tcctgctcgg cgtggcggct ctgggtctgg acgcggtacc catcgaaggt
     1501 tttgacgccg ccatcctcga tgcagaattt ggtctgaaag agaaaggcta caccagtctg
     1561 gtggttgttc cggtaggtca tcacagcgtt gaagatttta acgctacgct gccgaaatct
     1621 cgtctgccgc aaaacatcac cttaaccgaa gtgtaattct ctcttgccgg gcatctgccc
     1681 ggctatttcc cctcagattc tcctgatttg cataaccctg tttcagccgt catcataggc
     1741 tgctgttgta taaaggagac gttatgcagg atttaatatc ccaggttggg gatttagcgg
     1801 gtattgagat cgatcacacc acctcgatgg tgatgatttt cggtattatt tttctgaccg
     1861 ccgtcgtggt gcatattatt ttgcattggg tggtactgcg gaccttcgaa aaacgtgcca
     1921 tcgccagttc acggctttgg ttgcaaatca ttacccagaa taaactcttc caccgtttag
     1981 cttttaccct gcaggggatt atcgtcaata ttcaggcggt attctggctg caaaaaggca
     2041 ccgaagcggc agatattctg actacctgcg cgcagttgtg gatcatgatg tatgcgctgc
     2101 tttcagtctt ctcgttgctg gatgttattt tgaatctggc gcagaaattc ccggcggcat
     2161 ctcagttacc gctgaaaggg atatttcagg ggattaaact gatcggcgca atcctggtcg
     2221 gcattttgat gatctcgctg ctgattggtc agtcgccagc gattctgatc agcggtcttg
     2281 gtgcaatggc tgccgtgctg atgttggtat ttaaagatcc gattcttggt ctggtggcag
     2341 gtattcagct ttccgcgaac gatatgctga aactgggcga ctggctggag atgccgaaat
     2401 acggcgcgga tggcgcggtg atcgatattg ggttaaccac cgtcaaagtg cgtaactggg
     2461 acaataccat taccactatt cccacctggt ctctggtttc tgactccttt aaaaactgga
     2521 gcgggatgtc agcatctggc gggcgacgta ttaagcgcag tatcagtatt gatgtcacca
     2581 gtattcgttt tcttgatgaa gacgaaatgc aacgtctgaa taaagcgcac ttgttaaaac
     2641 cttatttaac cagccgccat caggaaatta atgagtggaa tcgccagcaa ggttctacgg
     2701 agtcgatatt aaacctgcgc cgaatgacca atattggaac ctttcgtgcc tatctgaacg
     2761 aatatctgcg taaccatccg cggattcgta aagatatgac cttaatggta cgccaactgg
     2821 ctccaggtga taacggttta ccgctcgaga tctacgcgtt taccaacacc gtggtgtggc
     2881 tggaatatga aagcattcag gctgatatat tcgatcacat atttgcgatt gtcgaagagt
     2941 ttggtctgcg acttcatcag tcgccagccg gcaatgatat tcgctctctg gcgggtgcat
     3001 ttaagcagta attaaaaaaa ccgctctcat cgaatggatg agagcggaca tcgttttgtc
     3061 ggatgtagcg tgaatgcctt atttccgacg cagcgtttta aatgccacaa acaggaatac
     3121 aatccacacc ggcagcagga tcgctgacaa gcgcatatca tccatcgtgc acatcagcag
     3181 caaaatcatg ccgaggaagg caatgcaaag atagttgccg aacggataaa gcagcgcctt
     3241 aaactgtgtt tcacgtccct gacgtcgcat cgccgcgcga aaacgcagat gcgccaggca
     3301 gatcataatc cagttcaaca gcagcgttgc taccaccagc gccatcagca gaccaaacgc
     3361 tttttgcggc agcagatagt tgattaacac caccagcgaa gtgatcgctc cggaaagcat
     3421 cagcgagtta atcggcacgc cgcgatggct gacgcgagtc aaaaacttcg gcgcattacc
     3481 ctgcacagaa aggccaaaca gcatgcggct gttagagtaa accccgctgt tatacactga
     3541 cagcgatgct accagaatga cgaagttcag cgcagaagct acctcgttgc tgtcgagatt
     3601 atggaaaatc atcacaaacg ggctactgtt ggatttcact tccacccacg gatagagcgc
     3661 cagtaaaacc accagtgaac cgatgtaaaa cagcaggatg cgatacacca cctgatttac
     3721 cgcttttgga atgctttttt ccggatcgcg cgcttcagcg gcagtaatcc caatcagctc
     3781 cagaccgccg aaggagaaca taattaccgc cagcgacaaa atcagcccat tccagccggt
     3841 ggcgaagaaa ccaccgtagc accagaggtt gtcgatactg gctttctcgc cgccgtgacc
     3901 agaaaacagc agccacaggc caaagccgat cataccgatg attgccagca ctttaatcaa
     3961 cgcaaaccag aactcggttt cgccatataa gcgcacgttc accaggttaa cggcgttgat
     4021 gataataaag aaggcggcag cccaaatcca cgttggaaca tccgggaacc agtactgcat
     4081 atagatgccc gcagcggtca gctctgccat tcccaccagc acgaacatta cccagtagtt
     4141 ccagccagag aggaagcccg caaacggtcc ccagtattta taggcaaagt gggcaaatga
     4201 accggatacc ggctcttcga ccaccatctc gccgagctgg cgcataatca ggaaagcgat
     4261 gatcccggcg acgccgtagc ccagcaatac agccggaccc gccatctgaa tcgccgggcc
     4321 aatgccaaga aacagaccag taccaattgc gccacccagc gcaatcagtt gaatatgacg
     4381 gttatgtaat ccgcgatgaa gcgtcggctc ttgattcgac gcagtatctt ccgatacggt
     4441 tgacgcgttt ttcacgcctt tcccctgtgt gtcttttttg ttgaggggca ccttttaaca
     4501 tttagtgccc atcgtcgcaa gacacaatcc acacggttaa acggggtatc ctgcttttat
     4561 ttccgtaccc gatgtcggtg cagccacatc agcttatacg ccgccgggat aataaacagc
     4621 gacagcaaag gcgcggtgat catgccgcca atcatcggtg cggcaatccg gctcatcacc
     4681 tctgaaccag cccccgttcc ccacagaatc ggcagcagac cggcgataat caccgccacc
     4741 gtcatcgctt tcgggcgcac gcgcagtacc gcgccgtgat acaacgcctc atccagcttc
     4801 tgctcactga atgtttgcgg attattcaac gacggctcgg cctctatggc gtgacgtaaa
     4861 tacatcagca tcaccacgcc aaattcggcg gcgcccccgg caagggcaat aaaaccggtg
     4921 cccgttgcca cagaaagatg aaagcccatc caccacagca accagatgcc gcccaccagc
     4981 gcaaacggta cgctgctgat aatcagcaac gcttcgccca cccgacggaa tgccagatac
     5041 aacagcacga agatgatcat cagtgtcatc ggcaccatga gtttcagctt atggttggcg
     5101 cgctccagta gctcgaactg cccggagaat gccacgctgg tgcccggttt taactgcact
     5161 ttttcaacta tcgctttttg caaatcgtga accaccaaca ccatgtcacg atcgcgggca
     5221 tcgatataaa tccagctcgt cgggcgcgca ttctcggttt tcagcatcga cggtccggta
     5281 gagactttaa cgtcggccac gtctgccagg gtgatttgct gcttcatcgg cgtcaggatc
     5341 ggtagctggc gcagtgcctg cgggctatcg cgccagcttt gcggataacg cagattaatg
     5401 ggataacggg caatcccttc caccgtttcg ccaaccatcg ccccgcccac cgcagaagtc
     5461 acaaacaact gcacatccgc caccgtcata ccgtaacgcg cggctttttc acggttaatc
     5521 tcaacgttga tatagcgccc accttccaga cgctcggcaa gcgcagaagc cacgcctggc
     5581 accgttcgcg ctacttcttc aatttgctca gccatcgcgt cgatatccgc cagcacagtg
     5641 ccggaaactt taatgccgat ggggctttta atgccggttg agagcatatc gatacggtta
     5701 cgaattggcg gcacccacag attcgccagc cccggcagcc gcacggtgtt atccagttcc
     5761 tcaatgattt tgtccatcgt catgccaggc cgccactgat cctgcggctt aagctggatg
     5821 gtcgtttcaa ccatctcgag cggagcagaa tcggtggcgg tttccgcttt cccggttttg
     5881 ccaaataccc gcgccacttc aggtacgctc ataattagct tgtcggtttt ttgcagcata
     5941 ctcgccgcct ctgctgcgga aatccccggc agcgtcgatg gcatatacaa caagtcgcct
     6001 tcattgatct gcggtaaaaa ttccccgcca actttattga gcggccagag aaccgtcagc
     6061 accgaaagcg ctgccaccaa cagcgtggtt ttcggccagt gcagtacttt cagcaataga
     6121 ggatgataaa cacgaatcaa aaagcgattg agcgggttac tgctttccgg cggaattttg
     6181 ccacggatcc agtaacccat aaggatcggg atcactacga tcgccagcag cgccgcaccc
     6241 gccatcgcat acgttttggt gaacgccagc gggccaaaca gacgcccttc ttgcccttcc
     6301 agggtgaaga ttggaataaa cgacagcgtg ataatcagca gactgataaa cagcgccggc
     6361 cccacttcaa cagatgcatc ggtaatcacc tgccagcgcg ttttattatc cagcgtggcg
     6421 tcaggatgct ggtgctgcca ctcttccagc cgtttatgcg cattctcgat catgacgata
     6481 gcagcatcga ccatcgcccc gacggcaatc gcaatgccac ccaacgacat aatattggca
     6541 ttcagtccct ggaagtgcat gacaataaaa gcaatacaca accccagcgg caacgaaata
     6601 atcgccacca gcgccgagcg cacatgccag agaaacagcg cacagactac cgccaccaca
     6661 ataaactctt ccagcaactt gccgctgagg ttgtcgatgg cgcggtcaat gagctggctg
     6721 cgatcgtatg ttgtaactat ctccacgcct tccggcagac tacttttcag cgtttccagt
     6781 ttgtccttca cggcggcgat cacttctcgg gcgtttttgc cggagcgcag gatcaccacc
     6841 ccgcccgcca cttcgccttc gccgttcagt tcggcaatgc cccggcgcat ctccgggcca
     6901 acctggacct tcgcaacatc gcgcagataa acgggcacgc cattttcact ggcttttaaa
     6961 acgatgtgat taaagtcgtc gagcgtttgc agatagccgc tggcgcgcac catatattcc
     7021 gcttccgcca gttcgatcga cgaaccgccc gcttcctagt ttgaagcatc cagcgcgctt
     7081 tttacttcgg cgagactgat gccatactgc gccaggcgct ggggatcgat aaccacctga
     7141 tactctttca ccacaccgcc caccgacgcc acttccgcaa cgtcagggat ggttttcagc
     7201 tcatatttga gaaaccagtc ctgtaatgag cgtaaatcgg ccagatcgtg cttaccgctg
     7261 cgatccacca gtgcatattc atagatccag ccaacacccg tggcatctgg ccccagctcg
     7321 gcgctgactc ccgcaggcag cttaccctgt acctggttga ggtactccag cacccgcgaa
     7381 cgcgcccagt acggatcggt accatcttcg aaaatgacat acacataaga gtcgccaaac
     7441 tgcgagaaac cacgcacagt cttcgcgcca ggcaccgaca acatggtggt ggttagcgga
     7501 taagtcacct gattttcaac gatttgcggt gcctgcccgg gatagctggt tttaataatc
     7561 acctgcacat cggagagatc cggcagcgca tccactggcg tattaatgat ggtccaggtg
     7621 ccccagatgc taagaaacaa cgcgcccatc agcaccaaaa aacggttcgc caccgagcga
     7681 cgaataatcc attcaatcat tggttattcc ctcaatgcgc atgggtagca ctttcagagc
     7741 gcatccgctc cagtgcgcca gaaatattgg cttcggaatc aatcaggaaa aggccgctgg
     7801 aaaccacctt ttcaccttcc gccagaccag agcgtaatgc ggtgacacct tgcgatgcct
     7861 ggaaaacggc aacgcgtttc ggtacaaagc gcccgtcggc atcaatggta atcacccgct
     7921 gttcgctacc ggtatcaatc agcccttgtg acggaatgag cagcatcggt tcgctggcgg
     7981 tattgagttg caaccaggcg ttcatgcccg gttttagcgc ctcgtcggcg ttgtcgactt
     8041 ccagacgcag ctgcagcgtg caggtcgcgg catccacgcc gggtagcagc gtccatttgc
     8101 ggatggtgag tgttttatcc ggtcgtgccg gaacggtgag cgtaaactgc gaggcatctt
     8161 tcaccagcca ggcgatagac tccgggatcg cagcagtgac ccacaccggg tccataccct
     8221 gaattttcgc taccacgtta tctttggcga tattcattcc cgcgcgcaga tcaaacgcgg
     8281 tgatcacgcc atcaatgggc gctttgagcg taaagcgagt ctggattttt tgcgtggcga
     8341 tcaggcggcg aatatccgcc tccggcattc ccgccagtcg cagccgctca agaatgcctt
     8401 cagtctgggt cgccgtaccg ccggtttcgc gcagcagtaa atactcactc tgcgcttcca
     8461 cccagtcagg aatggtcagg tcgagaagcg gtgtgccctt ttgtacttta tcgcccacgg
     8521 taagcggata caccttgtcg ataaacccgg cagcgcgagc ctgcacaatg gcatactgat
     8581 actcgttgta actgacattc gccgggaaac tctgggcaaa agtcagcggt ccgcgcgtga
     8641 cggtagccgt tttcaccccc agattctgcg tctgagtcgg gtcaatgcgc acaccagacg
     8701 cagaactctc ttcatcggca tatttcggca ccagatccat atccataaac ggcgatttac
     8761 ctggtttatc gaaccgcgta ttggggtaca tcgggtcgta ccagaataag attttacgt
//
LOCUS       DAJVUN010000162         8744 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.162, whole genome shotgun sequence.
ACCESSION   DAJVUN010000162 DAJVUN010000000
VERSION     DAJVUN010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8744
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.162"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..137)
                     /locus_tag="OQQ76_003254"
     CDS             complement(<1..137)
                     /locus_tag="OQQ76_003254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
                     /protein_id="HCS1969643.1"
                     /translation="MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDF
                     AL"
     gene            425..1063
                     /gene="rutR"
                     /locus_tag="OQQ76_003255"
     CDS             425..1063
                     /gene="rutR"
                     /locus_tag="OQQ76_003255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator RutR"
                     /protein_id="HCS1969644.1"
                     /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI
                     AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL
                     EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ
                     HLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR"
     gene            complement(1103..5065)
                     /gene="putA"
                     /locus_tag="OQQ76_003256"
     CDS             complement(1103..5065)
                     /gene="putA"
                     /locus_tag="OQQ76_003256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional transcriptional regulator/proline
                     dehydrogenase/L-glutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="HCS1969645.1"
                     /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL
                     ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRP
                     ETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQ
                     EGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGK
                     LVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALVNARKLE
                     EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH
                     PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPE
                     LAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGL
                     EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQY
                     EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSF
                     VNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL
                     ANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPR
                     EVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAI
                     AEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS
                     VLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGS
                     TEVATLLQCNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG
                     QRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI
                     QTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYN
                     RNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF
                     GGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNAL
                     REWAANRPELQALCTQYGELAQAGIQRLLPGPTGERNTWTLLPRERVLCIADDEQDAL
                     TQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDS
                     DQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
                     "
     gene            5120..5329
                     /locus_tag="OQQ76_003257"
     CDS             5120..5329
                     /locus_tag="OQQ76_003257"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969646.1"
                     /translation="MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQ
                     LTFLKGATAKNVRECNLMKNSVAEH"
     gene            5488..6996
                     /gene="putP"
                     /locus_tag="OQQ76_003258"
     CDS             5488..6996
                     /gene="putP"
                     /locus_tag="OQQ76_003258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HCS1969647.1"
                     /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP
                     FVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE
                     YNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY
                     ETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIICVGGFGDSLEV
                     IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT
                     WMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAI
                     LAAVMSTLSCQLLVCSSAITEDLYKVFLRKHASQKELVWVGRVMVLVVALVAIALAAN
                     PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWL
                     GLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES"
     gene            7622..8410
                     /gene="phoH"
                     /locus_tag="OQQ76_003259"
     CDS             7622..8410
                     /gene="phoH"
                     /locus_tag="OQQ76_003259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HCS1969648.1"
                     /translation="MGRQKAVIKARREAKRVLRRDSRSHKQREEESVTSLVQMSGVEA
                     IGMARDSRDTSPILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK
                     DVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIG
                     KVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLP
                     RGVCSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTLHAYS"
BASE COUNT         1962 a         2268 c         2405 g         2109 t
ORIGIN      
        1 agggcgaaat cgaaatggta atgctccgct ttttgcacaa tggctttatt cagttcaaag
       61 gtcggcatgt actgcggcgc gtgggtcgaa atgagccagc cgttgttgcc aataggtacg
      121 aatacgccaa ttttcatcat caacctctct tcgtctcgta aagtgaaagt cagacggggc
      181 gctgcatcct gcatatcctt ttcagccgcg tattggcttg tttgcaaagc ggatgccagt
      241 ttttaaaaag tgaatattat taatgtgtta gcattgtgtt atctaaaata tctggtaaaa
      301 agtggactaa acggtcaaaa cagttgcaca taaaacatgc atccgtgcgc gatgagagtg
      361 cagaaggtcg aggccgggcg ggggttttgc tatcctgttg ccaatctaca agaggggaga
      421 gcgcatgacg caaggcgcag tgaaaacaac gggtaaacgt tcgcgcgcag taagcgcgaa
      481 gaaaaaagcg attcttagcg cagcactgga cactttttca caattcggtt ttcacggcac
      541 aaggctggag cagatcgcag agttggcggg tgtttcaaaa accaatctgc tgtattactt
      601 tccgtcaaaa gaggcgctgt atattgccgt gctgcggcag attctcgata tctggctggc
      661 accgttaaaa gcgtttcgtg aagatttcgc cccgctggcg gcgatcaaag agtacatccg
      721 tctgaagctg gaagtctcac gcgattatcc gcaggcttcg cgcctgttct gtatggagat
      781 gctggcaggc gcgccgctgt taatggatga actgacgggc gatttgaagg cattaattga
      841 tgagaaatcg gcgctgattg ccggttgggt caaaagcggc aaactcgcgc cgattgatcc
      901 gcagcatttg atttttatga tttgggcttc cactcaacat tacgccgatt tcgcccctca
      961 ggtggaggcg gtgacaggcg caacgttgcg cgatgaggta tttttcaatc aaacggttga
     1021 aaacgtgcag cggattatta ttgaggggat tcgaccacgt taaagatgcc ggaggagggt
     1081 gtaacatcct ccggctacct gtttaaccga tcgtcattaa actggcgtta ccgccagcgg
     1141 cagcggtatt cacactcagc gaacgttcga tatacagccg ttccagaagg atattgcttt
     1201 cgccacgggc aaaaccctgc accgaaacaa ttgcgccatc ccgcgcagca acggcttcac
     1261 acaatgcgcg aagctgatcc gaatcaccgt ggaagatcac cgcatcaaag ggttgagcgg
     1321 ttatattttc cgctttcgcc agttgaatac gttcgctgac tgccgatggc aatgccttta
     1381 ctagctgacg atgcagcgcg tcatccggcc acagtacctg gctgcccacc gccagcacgg
     1441 cggcgagctg agtcagcgca tcctgctcat catcggcaat acacaacacg cgctcacgcg
     1501 gcagcagcgt ccaggtgttg cgttcacccg tcggccccgg cagcaatcgt tgtattcctg
     1561 cctgcgccag ctcgccatat tgcgtacata acgcctgcaa ttctggacga tttgctgccc
     1621 attcccgcag tgcatttagc ggctgagtca atgcggcttt caactgtgca tcgaccggat
     1681 actctgcatc ctgacgcgcg agcgtcactg ccagcgcact ttccgggcga ttcgccagca
     1741 gacggtagag atagagcgga ccgcctgctt tcggcccggt accggacaac ccttcgccgc
     1801 cgaacggctg cacaccaacc actgcgccca ccatattacg gttaacatac aggttaccaa
     1861 catgggccga gccagtgacc tgggcgatgg tttcatcaat acgcgtatgg acaccaagcg
     1921 tcagaccata gccggaagcg ttaatctgct cgatcagctc tggtagctgg ttacggttgt
     1981 aacgcaccac atgcagcacc ggaccaaaga cctctttgtg caattcggca aagtcatcca
     2041 gttcgatcag cgtcggggcg acaaaggtgc cgctttgcca ttcacgggca tcttcgctgt
     2101 tttcccgcac cgcctggaac accggacggc ctttgctacg catggtctga atatggcgct
     2161 caatattggc tttcgcttcg ctatcaatca ccggaccgat atcggtggtc aggcgacccg
     2221 gattacccat ccggcattcg gccattgcac cgcgcagcat tttcaacgtg tggtcggcaa
     2281 tctcatcttg caggcacagc acgcgcagtg ccgaacaacg ctgacccgca ctgtcgaacg
     2341 ccgaggccag cacatccacg acgacttgtt cggtcagtgc tgaagaatcg acaatcatcg
     2401 cgttcatgcc gccggtttca gcgatgagcg gaatagggcg accctgagcg tccaggcggc
     2461 tggcgatatt gcactgcagt aacgtagcga cttcggttga accggtaaac atcaccccgc
     2521 gcacgcgatc atcacccgtc agttgcgcgc ccacggtttc cccctgacct ggcagcaatt
     2581 gcaccacgcc agggggtaca cccgcttcca gcaaaatggc gatcccttgc gcggcaatca
     2641 gcggcgtttg ttctgccggt tttgccagca cgctgttacc tgccgccagt gcggcagcga
     2701 tctgcccggt gaaaatagcc agcgggaagt tccacggact gatacacacc acaggcccta
     2761 atggacggtg ggtttcgtta gcgaaatcat cccgcacctg tccggcgtag tagtggagaa
     2821 aatcgaccgc ttcgcgcact tcggcaatag cgttactgaa ggtttttccg gcttcacgca
     2881 ccagaatacc aatcagttgc tgcatctggc tttccattag cacggcagcg cgatgcaaaa
     2941 tcgccgcgcg ttcagccgga ggcgtggcaa accagattgg cgcgttatta accgcacttt
     3001 ccagcgcctg ttctacttca cgcggcgtgg cttcacgcac aaagcccaca atatctttcg
     3061 gttccgcagg gttaataacg ggcgacatct cacctgccgc taccggttgt tccagcattg
     3121 gcaaggcctg ccatttttgc agtgcactat tgagcagggc agaggagagc gaggccagac
     3181 ggtgttcgtt agcgagatcc agccctgccg agttgtcgcg cccgtgaccg taaagatcgc
     3241 gcggcagggg aattttcgga tgcggtaatc cagtttgccc ttcctgttgc gccagttttt
     3301 ctacagcagt gaccggatcg gcgaccagtt catccagtgg caaagaggtg tcggcaatac
     3361 ggttaacaaa cgaggtgtta gcaccgtttt ccagcaggcg acgcaccaga tacgccagca
     3421 gcgtttcatg tgtgccaacc ggggcataaa tacgacacgg tcggttaagt ttaccgtcgg
     3481 caactttccc tgtgacctgc tcgtacagtg gctcgcccat accatgcagg cactggaact
     3541 cgtactgacc cggatagtag ttctgacctg ccagttgata aatcgctgcc agcgtatggg
     3601 cgttgtgcgt cgcgaactgc gggtagatta gattcggcac cgccagcagc tttttcgcac
     3661 aggcgagata agaaacgtcg gtatacacct tgcgggtata aaccggatag ccttcaaggc
     3721 cgtccatctg cgcacgcttg atttcactat cccagtacgc gcctttcacc aggcgaatca
     3781 tcagacggcg acggctgcgg gtggcgagat caaccaggta atcgatcacc aacgggcagc
     3841 gtttttgata agcctgaata acaaaaccga tgccgttcca gcctgccagt tccggctcga
     3901 aacagagatt ttccagcaga tcgagggaga tctccagacg atcggcctct tcggcatcga
     3961 tgttaatacc aatatcatac tgacgcgcca gcagggtgag tgatttcaga cgcgggtaaa
     4021 gctcttccat tacccggtca tactgggcgc ggctgtagcg cggatgcagc gccgacagct
     4081 tgattgaaat gcccggacct tcatagatgc cacgaccgtt agacgcttta ccaatggcgt
     4141 gaatcgcctg ctgataggaa accatatacg cctgtgcgtc tgcggcagtc agtgcagctt
     4201 cgcccagcat atcgtaagag taacggaaac ctttctcttc cagcttgcgg gcattgacta
     4261 acgcttccgc gatggtttca cccgtgacga actgctcgcc catcaggcgc atcgccatat
     4321 ccacaccttt gcggatcagc ggttcaccgc ttttaccgat aatgcggttc agcgagcggg
     4381 agaggctggc ttcgttatgg gtggaaacca gtttgccagt aaacaacagc ccccaggtag
     4441 cggcattaac aaacagtgac gggctacgac caatgtgtga ctgccagtta ccgttgctga
     4501 ttttgtcgcg aattaacgcg tcgcgggtgg ctttgtcggg aatacgcaac aacgcttccg
     4561 ccagacacat cagcgccacg ccttcctgcg atgacagcga aaactcctgc aataacccct
     4621 ggaccatacc tgcgcgacca ctggcatttt tttgattacg cagtttatcg gccagttgat
     4681 atgccagttt atgcgcctgt tcagcaactg gctgcggcag gcgggcttgt tccagcagca
     4741 tagaaaccgc ttcggtttcc gggcgacgat aggccgcggt gatcgcggcg cgggaaaccg
     4801 actggggcaa aatttgctcg gcaaagtcga ggaatggctg gtgtggttcc tctgccggag
     4861 tcggtgcttc atcgctctca ttggcagcac cagaaagcag cgcaggtagc tctggcagag
     4921 tatcgctgtt ttccagttgt tcgagataag aaaaaatcgc ctgcttaatt aaccagtgtg
     4981 gcgtgcgatc gatacgtgtc gcggcagact taatacgctc acgcgtcgcg tcgtccagct
     5041 taacccccat ggtggtggtt cccatgccat tactcctgtt gttctgaaag gtgcaactta
     5101 acgttatcgt gaaatatcca tgatgttgca actttgtgca accatgttaa atgtgacctg
     5161 cgtagcaagc ttaaaaatga atgaaatgtt aataaaagaa attgatatga cagggattaa
     5221 aaaaataact cagacttttt ctctgcggca gttaacattt ttgaaaggtg caaccgcaaa
     5281 aaatgtgaga gagtgcaacc tgatgaaaaa tagtgtcgct gagcactaaa atttaatgta
     5341 aatggtgtgt taaatcgatt gtgaataacc agcgcttccg gcaggatacg gtcgccctgg
     5401 taaaaaataa actctgttac cccgttccgg ttgcagatat aacggcaagt ttcgacattg
     5461 ccgataataa ttttttggag actttagatg gctattagca caccgatgtt ggtgacattt
     5521 tgtgtctata tctttggcat gatattgatt gggtttatcg cctggcgatc aacgaaaaac
     5581 tttgacgact atattctggg cggtcgtagt cttgggccat ttgtgacggc attatcggcg
     5641 ggtgcgtcgg atatgagcgg ctggctgtta atggggttgc ctggcgcggt ttttctttcc
     5701 gggatttccg aaagctggat cgccattggc ctgacattag gcgcgtggat caactggaag
     5761 ctggtggccg ggcggttgcg tgtgcatacc gaatacaata ataacgcctt aacattgccg
     5821 gattatttca ccgggcgttt tgaagataaa agccgcattt tgcgcattat ctccgcgctg
     5881 gttattttgc tgttcttcac catttattgc gcttcgggca ttgtggcagg cgcgcgtctg
     5941 tttgaaagta cctttggcat gagctacgaa acggctctgt gggcgggagc tgcggcgacg
     6001 atcctttaca cctttattgg cggtttcctc gcggtgagct ggactgacac tgtacaggcc
     6061 agcctgatga tttttgccct gatcctgaca ccggttatcg tcattatctg tgtcggtggc
     6121 tttggtgact cgctggaagt gatcaaacaa aagagcatcg aaaacgttga tatgctcaaa
     6181 ggtctgaact ttgttgccat tatctcactg atgggttggg ggctgggtta cttcgggcag
     6241 ccgcacattc tggcgcgttt tatggcggcg gattctcacc acagcattgt ccatgcgcgt
     6301 cgtatcagta tgacctggat gatcctctgc ctggcagggg cggtggctgt cggcttcttt
     6361 gggattgctt actttaatga gcacccggcg gtagcaggcg cggtaaacca gaacgccgag
     6421 cgcgtgttta tcgaactggc gcaaattctg tttaacccgt ggattgccgg gattctgctg
     6481 tcggcaattc tggcggcggt aatgtcaacc ttaagttgcc aactgctggt gtgctccagt
     6541 gcgattaccg aagatttata caaagtattt ctgcgtaaac atgccagcca gaaagagctg
     6601 gtgtgggtag ggcgtgtgat ggtgctggtg gtggcgctgg tggcgattgc gctggcggca
     6661 aacccggaaa accgcgtgct gggcttagtg agctacgcgt gggcaggctt tggcgcggcg
     6721 tttggtccgg tggtgctgtt ctcggtgatg tggtcacgca tgacgcgtaa cggtgcactg
     6781 gcggggatga tcatcggtgc gctgacggtt atcgtctgga agcagttcgg ctggctggga
     6841 ctgtacgaaa ttattccggg cttcatcttc ggcagtatcg ggattgtagt gtttagtttg
     6901 ctgggtaaag cgccgtcagc ggcgatgcaa aaacgctttg ccgaggccga tgcgcactat
     6961 cattcggctc cgccgtcacg gttgcaggaa agctaaggga cttagcctgc ggcggttttg
     7021 tttggcttca gcagcgggtt gcgctccctt aatgtgcctc gccatataaa ttgaatggtg
     7081 cagggagcgc gcagggggcg gccaatcgcc gccgccccct gtgcaccccc gggctctggc
     7141 gaacaaaatc gccgctgcgc ggtaccttca gcttatcccc ttcggctacc gggtcgggcg
     7201 cgaggtaacg tcctgtaaga cgcgccctca gcccacatcc atgtgggctg tcccggcctt
     7261 cggggaacgc ttcagcgatt ttgacgccac caacacccga gctgttatta tgttccgggc
     7321 aaaaagttag atttgataat cgcggatggt aacgtcctgt actggacatg ttttagataa
     7381 tcaacgcgcc accactcgcg gagttttctc ctccggtagt catctcgtca ctttgcattt
     7441 tcaacctcat cctttctttt catgtgttac cgacgccgta aacggtgcgc gtagccgttt
     7501 ttcggcattt tatccaaaag caaactatgg cttacaagga agccaaccct ctgatgttcg
     7561 tgcgcataat cgcgctgcca acggcgcgtg tgatgaatac aaacaactca aggtgctctc
     7621 catgggaaga caaaaagcag tgatcaaagc tcgtcgcgag gcaaaacgtg tgctgagacg
     7681 ggattcgcgc agccataagc agcgtgaaga agaatcggtc acctcgcttg tgcagatgag
     7741 cggcgtagaa gccattggta tggcccgcga cagtcgcgat acctcgccca tcctcgcgcg
     7801 aaatgaagcg caattgcact atctgaaggc tattgagagt aagcagctga tattcgccac
     7861 gggcgaagcc gggtgcggaa aaacctggat cagcgcagca aaagcggcag aggccctgat
     7921 acataaggat gtcgacagga ttatcgtcac ccgtccagtt ctgcaagccg atgaagatct
     7981 tggcttctta cctggtgata tcgcagaaaa gtttgctccc tattttcgcc cggtctacga
     8041 cgtgctggtc cggcgcttag gggcttcctt tatgcagtac tgcctgcgac cggaaatagg
     8101 gaaggtggaa atcgcgccgt tcgcctatat gcgtggacgt acctttgaaa atgcagtcgt
     8161 cattcttgac gaggcgcaga atgtgactgc cgcgcaaatg aaaatgtttt taacccgcct
     8221 cggggagaac gtgacggtta tcgtcaacgg tgatatcacg caatgcgatt tgcctcgcgg
     8281 cgtgtgctcc ggattaagtg acgcgctgga acgtttcgaa gaagatgaaa tggttgggat
     8341 cgtccggttc ggaaaagagg attgcgtacg ttcggcactt tgccaacgta cgctgcatgc
     8401 atacagttaa gtgtgttatc ggtgcagagc ccgggcgaac cgggctttgt tttatttcaa
     8461 cagattttca cttcaggtta gcgttcaggg gggcgacttt gagcgtgttg ataagctgaa
     8521 ctggagtctg gtttagatac tcttaccagg catttttcgt catagcatca gaccagtgta
     8581 atactgccag cgcggagagt ttttcttcca gaagccaaaa aaatgagcat ctgcctatct
     8641 tttttcggcc attcaacctg tacaggagat ctggtgccaa ttttgcttat gaggtttaat
     8701 caacaatggg ctatactttg actgactgtt taacaccgaa tata
//
LOCUS       DAJVUN010000163         8719 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.163, whole genome shotgun sequence.
ACCESSION   DAJVUN010000163 DAJVUN010000000
VERSION     DAJVUN010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8719
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.163"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ76_003260"
     CDS             244..1155
                     /gene="ttdA"
                     /locus_tag="OQQ76_003260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit alpha"
                     /protein_id="HCS1969649.1"
                     /translation="MMSESNKQQAVNKLTEIAANFTAMISTRMPDDVVDKLKQLKDAE
                     TSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVE
                     EATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPG
                     RSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPI
                     GSRHPNPKAAELELRQEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTG
                     CWAHRRGTLLVHADLTFENLSHTRSAL"
     gene            1152..1740
                     /gene="ttdB"
                     /locus_tag="OQQ76_003261"
                     /pseudo
     CDS             1152..1740
                     /gene="ttdB"
                     /locus_tag="OQQ76_003261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417534.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit beta"
     gene            1789..3252
                     /gene="ttdT"
                     /locus_tag="OQQ76_003262"
     CDS             1789..3252
                     /gene="ttdT"
                     /locus_tag="OQQ76_003262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-tartrate/succinate antiporter"
                     /protein_id="HCS1969650.1"
                     /translation="MKPSTEWWRYLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVI
                     VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSV
                     IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA
                     RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL
                     IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETEL
                     QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSN
                     KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRY
                     FFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG
                     SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL"
     gene            complement(3295..4308)
                     /gene="tsaD"
                     /locus_tag="OQQ76_003263"
     CDS             complement(3295..4308)
                     /gene="tsaD"
                     /locus_tag="OQQ76_003263"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001264383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HCS1969651.1"
                     /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP
                     ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW
                     NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
                     AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA
                     ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR
                     AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL
                     PAA"
     gene            4545..4760
                     /gene="rpsU"
                     /locus_tag="OQQ76_003264"
     CDS             4545..4760
                     /gene="rpsU"
                     /locus_tag="OQQ76_003264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HCS1969652.1"
                     /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE
                     RKRAKASAVKRHAKKLARENARRTRLY"
     gene            4871..6616
                     /gene="dnaG"
                     /locus_tag="OQQ76_003265"
     CDS             4871..6616
                     /gene="dnaG"
                     /locus_tag="OQQ76_003265"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCS1969653.1"
                     /translation="MAGRIPRVFINDLLARTDIVDLIDTRVKLKKQGKNFHACCPFHN
                     EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG
                     SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF
                     APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF
                     GGRVLGDDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY
                     GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ
                     LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLS
                     TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT
                     MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR
                     GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE
                     ERLELWTLNQELAKK"
     gene            6811..8652
                     /gene="rpoD"
                     /locus_tag="OQQ76_003266"
     CDS             6811..8652
                     /gene="rpoD"
                     /locus_tag="OQQ76_003266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HCS1969654.1"
                     /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
                     IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM
                     REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD
                     LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSTDDDNSIDPELAR
                     EKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM
                     MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS
                     EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK
                     KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
                     RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME
                     TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID
                     MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD"
BASE COUNT         2102 a         2328 c         2330 g         1959 t
ORIGIN      
        1 cctgcaagtc tttggctaaa ggccagctat tcagcatcgt taattatccg cagttgtgat
       61 aagcgcagtg tatttcgcaa aacattgcca ttccctgctc tggcgcaata ttcattctta
      121 ttttcgcgtt gattcacgaa ctgttaatta catattcacg gtggcaaaaa atataaaacc
      181 acatttttag tggtagtttg tggcggtgaa tttttccaga caaatacaaa aactggagtt
      241 gccatgatga gcgaaagtaa taagcaacag gcagtgaata agttgacaga gattgccgct
      301 aactttaccg ccatgatttc tacccgaatg cctgatgacg tggtggataa actaaaacag
      361 ctaaaggatg ccgaaacgtc gtcgatgggg aaaattatct accatacgat gttcgacaac
      421 atgcaaaaag cgattgacct gaatcgtcct gcctgtcagg acaccgggga gattatgttc
      481 ttcgttaaag tcggttcccg cttcccactg cttggcgagc tgcaaagcat actcaaacaa
      541 gccgtggaag aggcaaccgt caaagcgcca ctacgtcaca atgcggtaga aatttttgac
      601 gaagtaaaca ccggcaaaaa taccggtagc ggcgtaccgt gggtcacctg ggacatcatc
      661 cccgacaatg acgatgcgga aatcgaagtt tacatggcag gtggcggctg cacgctacct
      721 ggccgctcga aagtgttaat gccgtcagaa ggctacgaag gcgtggtgaa attcgtcttc
      781 gaaaatatct ccaccctcgc cgtaaacgcc tgtccaccgg tactggtggg cgtgggcatc
      841 gccacctcgg tggaaaccgc cgccgtactc tcgcgtaaag ccattttgcg cccgattggc
      901 agccgccatc ccaatccaaa agcggcagaa ctggagctac gccaggaaga aggactcaac
      961 cgtctgggga ttggtccaca agggctgact ggcaacagtt cagtgatggg cgtacatatc
     1021 gaatctgccg cccgccatcc gtcaaccatc ggcgttgctg tctctaccgg ctgctgggcg
     1081 catcgtcgcg gcacactgct ggttcatgcc gatctcacct ttgaaaatct gtctcacacc
     1141 cggagcgcgt tatgaaaaag atcctgacaa ccccgatcaa agctgaagat ctgcaagata
     1201 ttcgcgtcgg cgatgtgatc tacctgaccg gtacgctggt gacctgccgt gacgtttgtc
     1261 accgccgctt gatcgaactg aaacgtccga tcccttacga tctcaacggc aaagcgattt
     1321 tccacgctgg ccccatcgtg cgcaaaaacg gcgataaatg ggagatggtt tccgttggcc
     1381 cgacaaccag tatgcgtatg gaaagttttg aacgtgaatt tatcgagcag accggcgtga
     1441 ggcggaatgg ggccgctgac cgaagaaggc tgccagaaat tcaaggcgct acatgtgatt
     1501 ttcccggcag gctgcgcggt gctggcggca acccaggtgg aagagattga agaagtgcac
     1561 tggacagagc tcggaatgcc ggagtcgctg tgggtctgcc gggtcaaaga gttcggcccg
     1621 ctgattgtct ctattgatac ccacggcaac aatctgatag ccgaaaacaa aaagctgttc
     1681 gccgaacgcc gcgatcccat cgtggaagag atctgcgagc acgtccatta catcaaataa
     1741 ccctcccgga gaggctcgtc ccctctcctt tttcgcaggc ataacacgat gaaaccttcc
     1801 actgaatggt ggcgatacct tgcgccgctg gcggtcatcg ccattattgc tctaattccg
     1861 gttcccgcag ggctggagag tcatacctgg ctctactttg ccgtttttac tggcgtgatc
     1921 gttggactga tcctcgaacc cgtgccgggt gccgtggtgg cgatggtggg tatctccatc
     1981 atcgccatac tctctccctg gctgctgttc agccccgaac agctcgccca gccaggcttt
     2041 aagttcaccg ccaaatccct ctcctgggca gtttctggtt tttctaattc ggttatctgg
     2101 ctcattttcg ccgcctttat gtttggcaca ggctatgaaa aaaccgggct tggacgccgc
     2161 attgcgctga ttctggtgaa aaagatggga catcgcacgc tgtttctcgg ctatgcggtg
     2221 atgttctccg agctgatcct cgcacctgta acaccgtcca actcggcgcg tggtgcgggg
     2281 attatctatc ccatcatccg taacctgcca ccgctctatc aatcacaacc aaacgacagc
     2341 agttcgcgca gcattggctc gtacatcatg tggatgggga ttgttgccga ctgcgtgacc
     2401 agcgccattt tcttgacggc gatggcacca aacttgctgt taattggact gatgaaaagc
     2461 gcatctcacg ccacgctgag ttggggcgac tggttcctcg ggatgttgcc gctcagtatt
     2521 ttgctggtgc tgctggttcc ctggctggct tatgtgctgt acccgccggt actgaagtct
     2581 ggcgatcagg tgccgcgctg ggcagagacg gaactgcagg caatgggccc gctctgttcg
     2641 cgtgaaaaac ggatgctggg gctgatggta ggcgcgctgg tgctgtggat tttcggcggt
     2701 gattatatcg atgccgcgat ggtcggttac agcgtggtgg cactgatgct gcttctgcgc
     2761 attatcagtt gggacgacat tgtcagtaat aaagcggcgt ggaacgtttt cttctggctg
     2821 gcctcgctta tcaccctcgc taccggactc aacaacactg gttttattag ctggtttggc
     2881 aaactgttag caggcagctt aagcggttat tcgccaacga tggtgatggt ggcgttgatt
     2941 gtggtgtttt atctgctgcg ctactttttc gccagcgcca cggcgtatac ctccgccctc
     3001 gcaccgatga tgattgccgc tgcgctggcg atgccggaaa tcccgctgcc ggtgttctgc
     3061 ctgatggttg gcgcggcaat tggtctgggg agcattctta caccatacgc caccggaccc
     3121 agtccgattt actacggtag tggttatctg ccaacggcgg attactggcg actgggggcg
     3181 atttttgggc tgatattcct cgtgttgctg gtgattaccg gcttactgtg gatgcccgtg
     3241 gtgttgcttt aggtgaggac ggtgccggaa attgctctcc ggcacccaat agttttacgc
     3301 agccggtaac tccgccagcg gccagcgcgg acgcacgcta acgccgagat ccgccgtcgc
     3361 gcctgcttta aaccgcacca ttccggcata ggcgatcatc gcgccgttat cagtacaaaa
     3421 ctccggacgc gcgtagaaca cttcgccgcg gcgttttttc atcatttccg ccagcttcgc
     3481 ccgtaacgtg cggttagcac tcacgccgcc cgccatgacc agtcgcttaa agcccgtctg
     3541 atccaacgct cgcttacact taatcatcaa cgtatcgacc accgcatctt caaaggcgcg
     3601 ggcgatatca gcacgcgtct ggtcgtcggt gccgttgtca cgaatcgtgt tcgccgcaaa
     3661 ggtttttaga ccagaaaagc tgaaatccag ccccggacgg tcggtcatcg gacgcgggaa
     3721 aacaaagcgc ccggcagtac cctgagccgc cattttcgac agtaacggtc cgccaggata
     3781 atccagcccc agcagtttcg cggttttatc aaacgcttca ccggcggcat catcgataga
     3841 ctcgccgagc agctcgtact gaccaatgcc agtcacgctg attaactgcg tatgaccgcc
     3901 ggacaccagc agcgcgacaa acggaaattc cggcgggtta tcttccagca tcggcgctaa
     3961 cagatgccct tccatatggt gtaccgggat tgccggaacg ttccaggcaa acgccagaga
     4021 acgccccacg gttgcgccaa ccagcagtgc gccgactaat ccagggcctg cggtataggc
     4081 cacagcatca atgtcttttg ccgttaagcc agactccttt agcgccgcct ggatcaacgg
     4141 tacggttttg cgcacgtgat cgcgggaggc cagttcaggc acgacgccgc cgtagtcagc
     4201 gtgcaatttc acctgactat acaattggtt ggctaacaaa cctttttcat cgtcgtaaat
     4261 ggcgatgccg gtttcatcgc aggaagtttc aatacccagt acacgcatga cttgttttac
     4321 ctcgctttat taccgcgcag tgtaggacca atgcgggttg atgtaaaact ttgttcgccc
     4381 ctggagaaag cctcgtgtat actcctcacc cttataaaag tccctttcaa aaaggccgcg
     4441 gtgctttaca aagcagcagc aattgcagta aaattccgca ccattttgaa ataagctggc
     4501 gttgatgcca gcggcaaacc gaattaatca aaggtgagag gcacatgccg gtaattaaag
     4561 tacgtgaaaa cgagccgttc gacgtagctc tgcgtcgctt caagcgttcc tgcgaaaaag
     4621 caggtgttct ggcggaagtt cgtcgtcgtg agttctatga aaaaccgact accgaacgta
     4681 agcgcgctaa agcttctgca gtgaaacgtc acgcgaagaa actggctcgc gaaaacgcac
     4741 gccgcactcg tctgtactaa ttccccgaga gcgttgctct ccgatcagac cgagttgtag
     4801 ttgtaaggcc gtgcttccga aaggaatgcg cggcttattt tcgtttatga attgctaaaa
     4861 atcggggcct atggctggac gaatcccacg cgtattcatt aatgatctgc tggcacgcac
     4921 tgacatcgtc gatctgatcg atacccgtgt gaagctgaaa aagcagggca agaatttcca
     4981 cgcgtgttgt ccattccaca acgagaaaac cccgtcattc accgttaacg gtgagaaaca
     5041 gttttaccac tgctttggat gtggcgcgca cggcaacgcg atcgacttcc tgatgaacta
     5101 cgacaagctt gagttcgtcg aaacggtcga agagctggca gcaatgcaca atcttgaagt
     5161 gccatttgaa gcaggcagcg gccccagcca gatcgagcgc catcagaggc aaacgcttta
     5221 tcagttgatg gacggtctga atacgtttta ccaacaatct ttacaacaac ctgttgccac
     5281 gtctgcgcgc cagtatctgg aaaaacgcgg attaagccac gaggttatcg ctcgctttgc
     5341 gattggtttt gcgccccccg gctgggacaa cgtcctgaag cggtttggcg gcaatccaga
     5401 aaatcgccag tcattgattg atgcggggat gttggtcact aacgatcagg gacgcagtta
     5461 cgatcgtttc cgcgagcggg tgatgttccc cattcgcgat aaacgcggtc gggtgattgg
     5521 ttttggcggg cgcgtgctgg gcgacgatac ccccaaatac ctgaactcgc cggaaacaga
     5581 cattttccat aaaggccgcc agctttacgg tctttatgaa gcgcagcagg ataacgctga
     5641 acccaatcgt ctgcttgtgg tcgaaggcta tatggacgtg gtggcgctgg cgcaatacgg
     5701 cattaattac gccgttgcgt cgttaggtac gtcaaccacc gccgatcaca tacaactgtt
     5761 gttccgcgcg accaacaatg tcatttgctg ttatgacggc gaccgtgcag gccgtgatgc
     5821 cgcatggcga gcgctggaaa cggcgctgcc ttacatgaca gacggccgtc agctacgctt
     5881 tatgtttttg ccggatggcg aagaccctga cacgctggta cgaaaagaag gtaaagaagc
     5941 gtttgaagcg cggatggagc aggcgatgcc actctccgca tttctgttta acagcctgat
     6001 gccgcaagtt gatctgagta cccctgacgg gcgcgcacgt ttgagtacgc tggcactgcc
     6061 attgatatcg caagtgccgg gcgaaacgct gcgaatatat cttcgtcagg aattaggcaa
     6121 caaattaggc atacttgatg acagccagct tgaacgatta atgccaaaag cggcagagag
     6181 cggcgtttct cgccctgttc cgcagctaaa acgcacgacc atgcgtatac ttatagggtt
     6241 gctggtgcaa aatccagaat tagcgacgtt ggtcccgccg cttgagaatc tggatgaaaa
     6301 taagctccct ggacttggct tattcagaga actggtcaac acttgtctct cccagccagg
     6361 tctgaccacc gggcaacttt tagagcacta tcgtggtaca aataatgctg ccacccttga
     6421 aaaactgtcg atgtgggacg atatagcaga taagaatatt gctgagcaaa ccttcaccga
     6481 ctcactcaac catatgtttg attcgctgct tgaactgcgc caggaagagt taatcgctcg
     6541 tgagcgcacg catggtttaa gcaacgaaga acgcctggag ctctggacat taaaccagga
     6601 gctggcgaaa aagtgattta acggcttaag tgccgaagag cgatcgggaa gcccccgaca
     6661 gccgcactga gaggcagcgg caaatatata agtacgccct cgtaattatc gttggcggta
     6721 aacaaccgtt ggatttcagc gttaacggct gaaggacatc gggtcaatcg cccaacacca
     6781 acctcatgaa ataagtgtgg ataccgtctt atggagcaaa acccgcagtc acagctgaaa
     6841 cttcttgtca cccgtggtaa ggagcaaggc tatctgacct atgccgaggt caatgaccat
     6901 ctgccggaag atatcgtcga ttcagatcag atcgaagaca tcatccaaat gatcaacgac
     6961 atgggcattc aggtgatgga agaagcaccg gatgccgatg atctgatgct ggctgaaaac
     7021 accgcggacg aagatgctgc cgaagccgcc gcgcaggtgc tttccagcgt ggaatctgaa
     7081 atcgggcgca cgactgaccc ggtacgcatg tacatgcgtg aaatgggcac cgttgaactg
     7141 ttgacccgcg aaggcgaaat tgacatcgct aagcgtattg aagacgggat caaccaggtt
     7201 caatgctccg ttgctgaata tccggaagcg atcacctatc tgctggaaca gtacgatcgt
     7261 gttgaagcag aagaagcgcg tctgtccgat ctgatcaccg gctttgttga cccgaacgca
     7321 gaagaagatc tggcacctac cgccactcac gtcggttctg agctttccca ggaagatctg
     7381 gacgatgacg aagatgaaga cgaagaagat ggcgatgacg acagcaccga tgatgacaac
     7441 agcatcgacc cggaactggc tcgcgaaaaa tttgcggaac tacgcgctca gtacgttgta
     7501 acgcgtgaca ccatcaaagc gaaaggtcgc agtcacgctg ccgctcagga agagatcctg
     7561 aaactgtctg aagtattcaa acagttccgc ctggtgccga agcagtttga ctacctggtc
     7621 aacagcatgc gcgtcatgat ggaccgcgtt cgtacgcaag aacgtctgat catgaagctc
     7681 tgcgttgagc agtgcaaaat gccgaagaaa aacttcatta ccctgtttac cggcaacgaa
     7741 accagcgata cctggttcaa cgcggcaatt gcgatgaaca agccgtggtc ggaaaaactg
     7801 cacgatgtct ctgaagaagt gcatcgcgcc ctgcagaaac tgcagcagat tgaagaagaa
     7861 accggcctga ccatcgagca ggttaaagat atcaaccgtc gtatgtccat cggtgaagcg
     7921 aaagcccgcc gtgcgaagaa agagatggtt gaagcgaact tacgtctggt tatttctatc
     7981 gccaagaaat acaccaaccg tggcttgcag ttccttgacc tgattcagga aggcaacatc
     8041 ggtctgatga aagcggttga taaattcgaa taccgccgtg gttacaagtt ctccacctac
     8101 gcaacctggt ggatccgtca ggcgatcacc cgttctatcg cggatcaggc gcgcaccatc
     8161 cgtattccgg tgcatatgat tgagactatc aacaaactca accgtatttc tcgccagatg
     8221 ctgcaagaga tgggccgtga accgacgccg gaagaactgg ctgaacgtat gctgatgccg
     8281 gaagacaaga tccgcaaagt gctgaagatc gccaaagagc caatctccat ggaaacgccg
     8341 atcggtgatg atgaagattc gcatctgggg gatttcatcg aggataccac cctcgagctg
     8401 ccgctggatt ctgcgaccac cgaaagcctg cgtgcggcaa cgcacgacgt gctggctggc
     8461 ctgaccgcgc gtgaagcgaa agttctgcgt atgcgtttcg gtatcgatat gaacaccgac
     8521 cacacgctgg aagaagtggg taaacagttc gacgttaccc gcgaacgtat ccgtcagatc
     8581 gaagcgaagg cgctgcgcaa actgcgtcac ccgagccgtt ctgaagtgtt gcgtagcttc
     8641 ctggacgatt aatcggtagg ccggatcagg cgttacgccg cacccggcac tagtccctct
     8701 gcacaaacgc caccttttc
//
LOCUS       DAJVUN010000164         8604 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.164, whole genome shotgun sequence.
ACCESSION   DAJVUN010000164 DAJVUN010000000
VERSION     DAJVUN010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8604
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.164"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            57..1009
                     /locus_tag="OQQ76_003267"
                     /pseudo
     CDS             57..1009
                     /locus_tag="OQQ76_003267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415162.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
     gene            1218..2183
                     /gene="lipA"
                     /locus_tag="OQQ76_003268"
     CDS             1218..2183
                     /gene="lipA"
                     /locus_tag="OQQ76_003268"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HCS1969655.1"
                     /translation="MSKPIVMERGVKYRDADKMALIPVKNVAIEREALLRKPEWMKIK
                     LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLTECFNHGTATFMILGAICTRRCPFCD
                     VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS
                     PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL
                     ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ
                     RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK"
     gene            complement(2284..2487)
                     /gene="tatE"
                     /locus_tag="OQQ76_003269"
     CDS             complement(2284..2487)
                     /gene="tatE"
                     /locus_tag="OQQ76_003269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatE"
                     /protein_id="HCS1969656.1"
                     /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN
                     DDDAAAKKGADVNLQAEKLSHKE"
     gene            complement(2616..3404)
                     /locus_tag="OQQ76_003270"
     CDS             complement(2616..3404)
                     /locus_tag="OQQ76_003270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deaminated glutathione amidase"
                     /protein_id="HCS1969657.1"
                     /translation="MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLA
                     RDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAG
                     NIVARYAKLYLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQA
                     LQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPF
                     GVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL"
     gene            3497..3880
                     /gene="crcB"
                     /locus_tag="OQQ76_003271"
     CDS             3497..3880
                     /gene="crcB"
                     /locus_tag="OQQ76_003271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HCS1969658.1"
                     /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIG
                     AFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN
                     VFVNLLGSFAMTALAFWLFSASTAH"
     gene            complement(3935..4144)
                     /gene="cspE"
                     /locus_tag="OQQ76_003272"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             complement(3935..4144)
                     /gene="cspE"
                     /locus_tag="OQQ76_003272"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1969659.1"
                     /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL
                     AEGQRVEFEITNGAKGPSAANVIAL"
     gene            complement(4319..4879)
                     /gene="pagP"
                     /locus_tag="OQQ76_003273"
                     /pseudo
     CDS             complement(4319..4879)
                     /gene="pagP"
                     /locus_tag="OQQ76_003273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415155.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) palmitoyltransferase PagP"
     gene            5469..6854
                     /gene="dcuC"
                     /locus_tag="OQQ76_003274"
     CDS             5469..6854
                     /gene="dcuC"
                     /locus_tag="OQQ76_003274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
                     /protein_id="HCS1969660.1"
                     /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI
                     MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV
                     VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG
                     AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW
                     QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI
                     CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ
                     SLISIATSFGSASIILMLVLAILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY
                     LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM
                     VPGTAAAVTGK"
     gene            complement(6895..7575)
                     /gene="dpiA"
                     /locus_tag="OQQ76_003275"
                     /gene_synonym="citB"
     CDS             complement(6895..7575)
                     /gene="dpiA"
                     /locus_tag="OQQ76_003275"
                     /gene_synonym="citB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator DpiA"
                     /protein_id="HCS1969661.1"
                     /translation="MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM
                     MIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF
                     DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGESKDELPTGID
                     PLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGR
                     PQRIYHSG"
     gene            complement(7544..>8604)
                     /gene="dpiB"
                     /locus_tag="OQQ76_003276"
     CDS             complement(7544..>8604)
                     /gene="dpiB"
                     /locus_tag="OQQ76_003276"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
                     /protein_id="HCS1969662.1"
                     /translation="LAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDPHGYI
                     TAINRNARKMLGLSSPGRQWLGKPIAEVVRPADFFTEQIDEKRQDVVANFNGLSVIAN
                     REAIRSGDDLLGAIISFRSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLL
                     QMKEYDRVLAMVQGESQAQQQLIDSLREAFADRQVAGLLFGKVQRARELGLKMIIVPG
                     SQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQ
                     GCGVPESLRDKIFEQGVSTRADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFS
                     IYIPKVKPNDSSINPIDR"
BASE COUNT         2193 a         2147 c         1947 g         2317 t
ORIGIN      
        1 agattattgt aattttttaa atattatttt tccatgaata aaattggagt aagtgcgtgg
       61 atagtaataa tcaaattgaa ccctgtttaa gcagaaagtc gtcagaaggt aaaccacaaa
      121 tatttacaac cttacgaaat attgctctta accttctgac tatttttgaa gctgtatatg
      181 tacataaagg gatcgttaat gcagcgaaag tgcttaatct gcccccctcg gcaatcagtc
      241 agtctattca gaaactgcgc gttatattcc ctgacccatt gtttattcgc aaaggccagg
      301 gtgtcactcc taccgcattt gcgatgcatc tacatgagta tatcagtcag ggccttgagt
      361 ccattcttgg ccgctggata tcgaaggaag ctatgataag caacgaacga taactattgc
      421 gaccactccc tcggtcggag ccctggtcct tcctgtcatc tatcgggcga ttaaaactca
      481 ctatccgcag cttttactgc gcaacccgcc catcagcgac gcggaaaacc aactcagtca
      541 gtttcaaacc gatctcatca tcgataacat gttttgcacc aatcgtacgg tgcaacatca
      601 tgttctgttc accgacaata tggtgttaat ttgccgcgag ggaaatccac tactctcttt
      661 agaagatgac agagagacta tcgacaacgc tgcgcatgta cttctgttac cggaagagca
      721 aaatttcagc ggtctgcggc agagagttca agaaatgttt ccggaccggc aaatcaattt
      781 caccagctac aacattttga caatcgctgc actggttgcc aacagtgaca tgttagcgat
      841 tattcccagc cgtttttata acctgtttag ccgctgctgg ccgctggaaa aactgccttt
      901 tccgtcctta aataaggagc aaatagattt ctctatccac tacaacaaat tcagcctgcg
      961 tgatcccatc ctgcacggag taatagatgt tatccgtaat gcattttgaa aaagtattgt
     1021 tacagccaga tcacagcgca gaacgataaa atggcacaat ccaacaacaa ttttacattt
     1081 tcgcgaccgc tttggctgct ttcaggtccg tttcaatgat atactgccag tcgttaattc
     1141 aaaaatagtt gataattaca acaatctatt gaattgaaac gctttccttc gtaattcgca
     1201 actggaacac gcacgctatg agtaaaccca ttgtgatgga acgcggtgtt aaataccgcg
     1261 atgccgataa gatggccctt atcccggtta aaaacgtggc aatagagcgc gaagccctgc
     1321 tgcgcaagcc ggaatggatg aaaatcaagc ttccagcgga ctctacacgt atccagggca
     1381 tcaaagccgc aatgcgcaaa aatggcctgc attctgtctg cgaggaagcc tcctgcccta
     1441 acctgacgga atgcttcaac cacggtacag caacgtttat gatcctcggc gctatttgta
     1501 cccgccgttg tccgttctgt gatgttgccc acggtcgccc ggtagctcct gatgccaatg
     1561 aaccagtgaa actggcgcag accattgccg atatggcgct gcgttatgtg gttatcacct
     1621 ccgttgaccg tgatgacctg cgcgatggcg gtgcccagca ctttgcggat tgcattactg
     1681 ccattcggga aaaaagcccg caaatcaaaa ttgaaactct ggtgccggat ttccgtggtc
     1741 gtatggatcg tgctctggat attctgactg caacgccacc agatgtgttc aaccataacc
     1801 tggaaaacgt accgcgtatt taccgtcagg tacggcctgg tgcagattac aactggtcgc
     1861 tgaagctgct ggaacgcttt aaagaagcgc atccggaaat cccgaccaag tctggtctga
     1921 tggtgggact gggtgaaacc aatgaagaaa ttattgaggt aatgcgcgac ctgcgccgtc
     1981 atggtgtgac gatgttaacg ctggggcaat atttgcagcc aagccgccat cacctgccgg
     2041 ttcaacgtta cgttagcccg gatgagttcg acgaaatgaa agccgaagcg ctggcgatgg
     2101 gctttaccca tgctgcatgc ggtccgtttg tccgctcttc ttaccacgcc gatttgcagg
     2161 cgaaagggat ggaagttaag taatcctgta ataattactt acatctgtct gataaaaaac
     2221 ccactttttg aagcgggttt tttgtatcga acaagatatt gagggagcgt cctgctcgcc
     2281 acgtcactct ttatgagaga gcttttcagc ctgaagatta acgtctgcgc cttttttcgc
     2341 cgccgcatca tcatcattca tcgccttctt gaacccttta atggccgctc caaggtctcc
     2401 acccagcgta cgtaacttct tagtcccaaa cagcagaacg accagcgccg caactactag
     2461 cagtttggta atactaatct cacccataga taccttcttg acatataacc ggcaacagaa
     2521 cgcgccttaa aaaccagaga atattaacgg tcattcgacg cgcgcacaca atagcaatct
     2581 gtaacaaggt gaatcaagcg ccgagtaaaa aaacatcata ataattgcgg cggcgcaaag
     2641 cgacggttgt ttaagacggg cagttgcgcg cgcacctgac gcacacgttc gggcgtcact
     2701 tccgccataa tgagtgcagg catttctgac gctgccgcaa tggtgacgcc aaagggatct
     2761 ataatccggc tttgcccgat atttttgttc ccgcactcgc ccgccgccac catataacag
     2821 gtggtatcca gcgcacgagc ggcaagcaac gttgaccagt gatgctcttt gagcggcccg
     2881 cgaacccagg cggcaggaag taccaggatt tcagctccct gtaatgcctg tgccagcgcc
     2941 agctctggaa agcgtaagtc ataacaggtc atcagaccga ccttcatccc ttccacctcc
     3001 agtaacggag cgatttcatt accagcatca acacggcgtg attcctgaat ggcaaatgca
     3061 tcatagagat acagtttggc ataacgggcg acgatgtttc ctgcctgaag tgccaccagc
     3121 atattccatg cgcgccccgg cgttgaagga acatgaatcg tcagaattgt cgtcatcatg
     3181 ttacgtttac tttctcgccg taaacgtccg aggaattcgc cttccagcag ctgtgctgat
     3241 ttaaccgata gatctgcatc atgatcatcg cgtgccagca atgcttccgg caggacaaac
     3301 agcgatacgt cgttttccgc cgcctgcgcc atcaacgagg cacaaatctc agcgttcttt
     3361 tcccacacag atgtaacagc aaactgtcct gcagcaacca gcattgtcac ctcctgtcag
     3421 agtcgtaaaa ttcgccaacg acgattattc ggcgttacac ttatcactca tacaaatcaa
     3481 atagcaggat tttgcagtgt tacaacttct tttagcagtt tttattggcg gtggtacggg
     3541 aagcgtggcg agatggctgt taagtatgcg atttaaccca ctgcatcagg cgattccgtt
     3601 ggggacgctg acagcaaacc tgattggggc attcatcata ggaatgggat tcgcatggtt
     3661 cagcaggatg acgaacattg atccagtgtg gaaagtatta atcaccaccg gattttgtgg
     3721 cggtctaaca accttctcaa cattttcggc agaagtggtg tttttgttac aagagggtcg
     3781 ctttggctgg gcattactga acgttttcgt caaccttctg gggtcttttg ccatgacagc
     3841 actggctttc tggctgtttt cggcctcaac cgcacactaa agaccaaaaa aaaaaccgct
     3901 gattaagcgg gttttgaatt cttgctgacg tatcttacag agcgattacg tttgcagcag
     3961 aagggccttt ggcaccgtta gtgatttcga actctacgcg ctgaccttca gcaagagttt
     4021 taaaaccatt agtctggatt gcagagaagt gtacgaacac gtctttgctg ccgtcttccg
     4081 gagtaatgaa accgaatcct ttggactcat taaaccactt aacgttacct ttaatcttag
     4141 acatcaaaat tacctttaca tgaaaaatag acacaaatgc tgtgtcggtt accagtacac
     4201 caattgtggt acgctttgtc cagtgcaact ttactaaaaa gtgataaaag tcgcgttatt
     4261 tttgatgtta cttattttag ctattgattt taaagaagtt actaaaactt catttgtctc
     4321 aaaactgaaa gcgcatccag gcaaagtaca cattgccatt gttgtaggta cccggaatgt
     4381 aggtcatctg aaaagtcact gggccataac ccacggaggc caatggcagt agaaccggga
     4441 gagggatgta attccagtta tcgcgtgccg ttacgccagc ggtgaatccc agacctaaat
     4501 gaaaattttc atccgccagc ggtcgccagg tactttccca tccgtatccg gcaatcggtt
     4561 cccatttgtt ccacgagtcc ttaaatgcca tggcatacag gccatgccag tttccttttt
     4621 catcccaacg cgacaggcca aaaccgccac cccacggtcg ctcgttatag cgatcggttt
     4681 tttctttgtc gtaagcgaaa cgtgcatgct aggtgatggc aggaatatat aaatcataat
     4741 gttcaggctg ttgccaggtt ggtgcaatat tttctctaaa cgttgtcatc cactcatctg
     4801 cgttagcaaa aactttacca acgctgatta actgaataaa aacaaaggaa aagatagcga
     4861 catatttact cacgttcatt tgtgaccata aaacatttat caaaaatcta ctactagcat
     4921 agcaaagcta caattaacat aaccttaata gacccaacat aaagaataat ctgaatagct
     4981 gctctattta tttccgcttg ttcaagttaa atatttccgc gcatcgatta aagatgatgc
     5041 gtcgttttct gcgatgggaa tagtcaaaaa agaaaaacca agtctttttt gatgacaaaa
     5101 tgcaatcaag gaaaaattat tttatttttt aacgagatac aacaatcatc ttaacgaagt
     5161 atataatata tatcgtcaac ccatgctcat attagattat ttttttgagc gcacagccgc
     5221 agctaacacc attgcaatta acaaatttgc atcaatccac catcaattat cacacattat
     5281 tatgtgataa ttgccaaccg ctaaatatgc gttttgttat ctatgtataa aaacagcaac
     5341 ttcaatgtct taatggcagt ttttcttgat tttaatcagc attcatcgcc aatttattgg
     5401 gcatattttt tccttaagct ttaggaattt tttattattt actttggggc ctggagacag
     5461 gaaaaattat gctgacattc attgaactcc ttattggggt tgtggttatt gtgggtgtag
     5521 ctcgctacat cattaaaggg tattccgcca ctggtgtgtt atttgtcggt ggcctgttat
     5581 tgctgattat cagtgccatt atggggcaca aagtgttacc gtccagccag gcttcaacag
     5641 gctacagcgc cacggatatc gttgaatacg ttaaaatatt actaatgagc cgcggcggcg
     5701 acctcggcat gatgattatg atgctgtgtg gatttgccgc ttacatgacc catatcggcg
     5761 cgaatgatat ggtggtcaag ctggcgtcaa aaccattgca gtatattaac tccccttacc
     5821 tgctgatgat tgccgcctat tttgtcgcct gtctgatgtc tctagccgtc tcttccgcaa
     5881 ccggtctggg tgttttgctg atggcaaccc tatttccggt gatggtaaac gttggtatca
     5941 gtcgtggcgc agctgctgcc atttgtgcct ccccggcggc gattattctc gcaccgactt
     6001 caggggatgt ggtgctggcg gcgcaagctt ccgaaatgtc gctgattgac ttcgccttca
     6061 aaacgacgct gcctatctca attgctgcaa ttatcggcat ggcgatcgcc cacttcttct
     6121 ggcaacgtta tctggataaa aaagagcaca tctctcatga aatgttagat gtcagtgaaa
     6181 tcaccaccac tgctcctgcg ttttatgcca ttttgccgtt cacgccgatc atcggtgtac
     6241 tgatttttga cggtaaatgg ggtccgcaat tacacatcat cactattctg gtgatttgta
     6301 tgctgattgc ctccattctg gagttcctcc gcagctttaa tacccagaaa gttttctctg
     6361 gtctggaagt ggcttatcgc gggatggcag atgcgtttgc taacgtggtg atgctgctgg
     6421 ttgccgctgg ggtattcgct caggggctta gcaccatcgg ctttattcaa agtctgattt
     6481 ctatcgctac ctcgtttggt tcggcgagta tcatcctgat gctggtattg gcgattctga
     6541 caatgctggc ggcagtcacg accggttcag gcaatgcgcc gttttatgcg tttgttgaga
     6601 tgatcccgaa actggcgcac tcttccggca ttaacccggc gtatttgact atcccgatgc
     6661 tgcaggcgtc aaaccttggc cgtacccttt cgcccgtttc tggcgtagtc gttgcggttg
     6721 ccgggatggc gaagatctcg ccgtttgaag tcgtaaaacg cacctcggta ccggtgcttg
     6781 ttggtttggt gattgttatc gttgctacag agctgatggt gccaggaacg gcagcagcgg
     6841 tcacaggcaa gtaaatagta atgccggagg caagtttcct ccggctttat catgtcaccc
     6901 actgtggtat atgcgttgtg gtctgccaac tttgccgtga acaatttcag caataatcag
     6961 atggcggctg gcgcaatatt caagataacg tctggcagtg gtgcggctga tggtcagtgc
     7021 ctgcgccacc gtttctgccg tatgttgcac accaggctct ttaaacagtt ttcgcaccgc
     7081 gtttagcgtc aagggatcaa tgccggtcgg cagttcgtct ttagattcac cgcgagcata
     7141 ggcattaaac atctcatcaa tttgcttctg gctggcgcta tcaatacttt ccagcatatg
     7201 tttacgctgg cggaaacggg ttagcgtttg ccccagccgt tcataggcaa tgggcttaat
     7261 gagataatca aatacaccac aacgtacggc ttcagacacc gtttccatat cgctggctgc
     7321 agtggtaaac accacgtcgc cgggataatg cgcctgcacc agttcatgca ataaattaat
     7381 ccctctgccg tcaggaagat agttatcgag caagattagc cccggcttaa aacgctcgat
     7441 catcattcgg gcctgcgcca ggtttcccgc cagtaatatc tgactgaatc cgggaatgtg
     7501 acgaatatat tccgcatgca tctctgccag cggcgtttcg tcctcaacga tcaatagggt
     7561 taatggagct gtcattaggt ttcactttcg gaatatagat tgaaaataag gtaccgcagg
     7621 gatcattatc ttcgagagtg ataacaccac cgcagcgcgt tacgtagctg gcaatcaagt
     7681 acaacccaat gccatgttca ccgggctcgt cagcacgcgt actgaccccc tgctcaaata
     7741 ttttgtctcg tagagactct ggaacgccgc agccctgatc ggcgacttca atcaccacat
     7801 catcgccttc atcgctgagg aataattcaa cgatcttgtt tccttcatcg ctacgcaggc
     7861 tggcttcgaa ggcgttatca agtaaattgc ccacaatggc tgcaaactcg gtgctatcca
     7921 gtcctggcgg cagttgcgaa agctggctac cggggacaat gatcattttt agccccagtt
     7981 cccgggcgcg ctgcacttta ccaaaaagca gccccgccac ctggcgatcg gcaaacgcct
     8041 cgcgcaggct gtcaataagc tgttgctggg cctgagactc cccctgcacc atcgccagca
     8101 cgcgatcata ctctttcatc tgcaacagac cattgagcgt cgacatccaa ttgagatgct
     8161 cgtgtcgcaa tgtacgaagg ctctcaacgt attgttttat ttgcgtcagt tgcgcattga
     8221 gggtggaaat ttcgtcttta ctgcgaaagc tgataatggc ccccagcaaa tcatcacctg
     8281 aacgaatagc ttcccgattg gcaataacgc tcagaccgtt aaagttagcc accacatcct
     8341 gacgtttttc atcaatctgt tcggtaaaga aatcggcggg cctgaccact tcagcaatgg
     8401 gtttacccaa ccattgccgt ccgggggaac tcagccccag catctttctt gcgttacgat
     8461 tgatggcggt aatgtaaccg tgcggatcca ccgcaatcag cccttcataa accgaactaa
     8521 acagcgcctc ttgctgacgg accacgcgtg cgatttgctt tggctccatg cccatcatct
     8581 gccgacggat atgcgcggcc agga
//
LOCUS       DAJVUN010000165         8600 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.165, whole genome shotgun sequence.
ACCESSION   DAJVUN010000165 DAJVUN010000000
VERSION     DAJVUN010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8600
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.165"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..184
                     /locus_tag="OQQ76_003277"
                     /pseudo
     CDS             1..184
                     /locus_tag="OQQ76_003277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312842.3"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
     gene            403..645
                     /locus_tag="OQQ76_003278"
     CDS             403..645
                     /locus_tag="OQQ76_003278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709694.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969663.1"
                     /translation="MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD
                     QYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW"
     gene            complement(975..1904)
                     /gene="fdhE"
                     /locus_tag="OQQ76_003279"
     CDS             complement(975..1904)
                     /gene="fdhE"
                     /locus_tag="OQQ76_003279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HCS1969664.1"
                     /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLREL
                     AENNPLDDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKH
                     WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFI
                     WAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC
                     ETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAV
                     ADDLASLVLDARMEQEGYARSSINPFLFPGEGE"
     gene            complement(1901..2536)
                     /gene="fdoI"
                     /locus_tag="OQQ76_003280"
     CDS             complement(1901..2536)
                     /gene="fdoI"
                     /locus_tag="OQQ76_003280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HCS1969665.1"
                     /translation="MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLM
                     QIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWVKNIRKIVVNEEVG
                     DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL
                     IVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE"
     gene            complement(2533..3435)
                     /gene="fdoH"
                     /locus_tag="OQQ76_003281"
     CDS             complement(2533..3435)
                     /gene="fdoH"
                     /locus_tag="OQQ76_003281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase O subunit beta"
                     /protein_id="HCS1969666.1"
                     /translation="MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKA
                     CQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMH
                     CSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKC
                     TLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAG
                     VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHY
                     VGVGPNRADEEENNLHEEKDEERK"
     gene            complement(3448..6498)
                     /gene="fdnG"
                     /locus_tag="OQQ76_003282"
     CDS             complement(3448..6498)
                     /gene="fdnG"
                     /locus_tag="OQQ76_003282"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5911..5913),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HCS1969667.1"
                     /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTR
                     ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFI
                     HSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLS
                     TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIR
                     SGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYD
                     KSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE
                     YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSM
                     MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNK
                     NKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENG
                     SIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNY
                     AIPHEPKSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIF
                     AGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL
                     LKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFET
                     PLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI
                     LQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIG
                     IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV"
     gene            6692..7525
                     /gene="fdhD"
                     /locus_tag="OQQ76_003283"
     CDS             6692..7525
                     /gene="fdhD"
                     /locus_tag="OQQ76_003283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HCS1969668.1"
                     /translation="MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVA
                     LVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSS
                     RRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
                     QPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSS
                     RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLS
                     N"
     gene            7679..>8600
                     /locus_tag="OQQ76_003284"
     CDS             7679..>8600
                     /locus_tag="OQQ76_003284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HCS1969669.1"
                     /translation="MKRNLLSSAIIVAIMALGLTGCDDKKAETETPPPANSQPAAPAP
                     EAPVAKAEDKPETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYVDWLKDFK
                     QGPTGEERTVYGIYGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNT
                     INEMDKYYTQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAEL
                     KNIEEREGKIFHYYSLAVMISAKQINNLISQEKFDVDAAMKKVSELETLVAQAKEADK
                     GGMNFSFINSAGQYQLEAKKYVRRIRDKVPY"
BASE COUNT         2052 a         2175 c         2272 g         2101 t
ORIGIN      
        1 agaggcaatt aaacggctga acaagcttcg gggctggcgt aaggtttcac gatctgcaat
       61 tttacgcgaa gcggttgagc aatatctgga gcggcagtaa tttccggtgc gtaaagcaaa
      121 gggaggcagg caaaaggggg aggtagttgg tgttgatgat cagtgtaagg agcataagga
      181 atgaaaaaaa tttttcattc ttgaatataa aaaaacagat gcccttattc tggtattaat
      241 acaaggctgt tttacttgaa cttataataa ctgcaactgt tacatcgtat ctggaaaacg
      301 cctcgcaaaa ataaaaaatg atgcgtaaat gagctttctt taaagattcg gcaagggtac
      361 ttttctctcc atagattcaa aaatgatatt ggcgagatat ttatgaactc tctggcaggt
      421 atagatatgg gcagaatttt actcgattta tcgaatgagg tgattaagca acttgatgat
      481 ctcgaggtgc agcgtaatct tcctcgtgcg gacctattaa gggaagcggt agatcaatac
      541 ctgataaatc aatcgcaaac agcaagaacc agtgttcctg gcatctggca agggtgtgag
      601 gaagatggtg tcgaatatca gcgtaagctg cgcgaggaat ggtaatggga aaaaatgatg
      661 tcaatcagat tgatgacaac gtgcgcgttg ttcatgccgg atgcggcgtg aacgccttat
      721 ccggcctaca aagtcatgca aattcaatat attgaagttt attggtaggc ctgataagcg
      781 cagcgcatca ggcaatcata cgcttgtcat cagtgacata cccataacct tatcgatgtg
      841 ttggagggaa gaacgaggca aacagacaat tgcggcatga tcttgaatgg gtaacgcgga
      901 atacgagaga tggtgtcgtc acaccctatg agctgtaatc cgggcgacca gcgccacccg
      961 gaaaacgtca gagattactc cccttcaccc ggaaacagga acgggttgat ggaactgcgg
     1021 gcatagcctt cttgctccat tcgcgcgtcc agtaccagag aagcgaggtc atctgccacg
     1081 gcttcaactt tcggttcttt ttcctgataa agaatcttca ggtaagtgcc gcagtcatcg
     1141 cagctttcgg ctttaatcgc ggcctgttcg tcatccagcg accagtaatg cagtttgccg
     1201 ctctgttcac agttgctgca ttttacgcgc actacgtgcc attcggtttc acacaggttg
     1261 cagtgcaggt aacgcagacc ctgagtggtg ccaatttgca ccatgctgga caccggcata
     1321 gaaccacaaa ccgggcaata ttgacgttgc tcgccgtatt cagcgcgggc tttgccgggg
     1381 atcagattgg ccatctgcgc ccagtagagc gacagtgcag cccagataaa cggcgcttta
     1441 tcgctgctga cggatgagaa atcagaggca aacagtgcgc tggccatatc ttccagctcc
     1501 tgagtcgatg ccttctccag attctcaatc actgccagcg ccgggccgct catttcaggt
     1561 ttcagctcag caatcagcgc catcagcagc ttttgccagt gcttatcacg cggcagaacg
     1621 tgaatatcca gcgggggctt gccctgtgcg ctggcttctt taatgcgcgc ggtcagatcc
     1681 atctccagcg gatggtcgta cagcaccact tcctgggcgt gggcgataag cgcagcaaag
     1741 cgcaggtaat catccagcgg attattttct gccagctcgc gcagacgctc ggcgcggcgg
     1801 ttgtataaat tcttgagccg agggaacaat aacggcggaa tcatatccgc cgtacgtttc
     1861 tcgctcgaac ccagctcatc ttgcgggatt atgcgaatac tcattcagct ttcttttccg
     1921 ttgtcttgcg gacctcacgg taccagcgcg ggtgatgttt cttcgcccag gcgctggtaa
     1981 cccatccttc caccatggcg gtaatcgtgc ctttcaccca aagggcggcg tagatatgca
     2041 ccatgataac cacaattaac gccactgcgg caaatgaatg cagcattaac gcgaatcgga
     2101 tcaccgggat tgagaaagca ggcgcaaaat aaggacgcca gataatcacg ccgctcacca
     2161 gcagcagaac caggaaaata atcgccgccc agaaaacgca tttctgaccg aagttataac
     2221 gcccggtgtc acctacttcc tcgttgacga cgatcttacg aatattcttc acccaaaaga
     2281 tatcatcccg attgattagg ttgtgatgcc agtaacggaa aaacatgatg atgaacgagg
     2341 caaacataac cacgccgaca aacgggtgca gaattcgcgc cagctgcggt gtgcccatga
     2401 tttgcatcaa ccagttgaag gacgggaaca aaaagcccag cccgctcacc gccgccagga
     2461 tgaagcagaa ggcggtgatc cagtggttga tacgttccgg cgcggtgtag cgcacgatgg
     2521 tgtcacgtcg tttcatttgc gctcctcgtc tttctcttcg tgcagattat tctcttcctc
     2581 atccgcacgg ttcggaccga cacccacgta gtggaagata ctggctgcga aggtagccgc
     2641 aaagccaaca gctgcgagcg gtttccagat gcctttccag aatttcacgg tttcgctgat
     2701 ttccgggttc tccggcaagc catgatacag atttggcttg tcagcatggt gcagcacgta
     2761 cataacgtgt gtaccaccga cgcctgccgg atcgtacagg cccgcattgt cgtaaccgcg
     2821 ggttttcagc tccgccacgc gctcgctcgc cagcgttttc atcgactctt tcgtaccgaa
     2881 gtgaatcgcg cccgttgggc aggtcttcac gcaggctggt tcttgcccaa ccaccacgcg
     2941 gtcaacgcac agcgtacatt tgtagacgcg gttgtcttcc gggttgaggc gcggaatgtc
     3001 gaacggacag cccgcaatgc aataaccgca gccaatgcac tgctcggact ggaagtcgac
     3061 gataccgttg gcatactgaa taattgcacc ttccgccggg cacgctttca gacagcctgg
     3121 atcggaacag tgcatacagc cgtctttgcg gatcagccat tccagtttgt cgttctgctc
     3181 cacttccgag aagcgcatca ccgtccacga tttggcactt aaatcattgg ggttgtcgta
     3241 caccccaatg ttattgccga cggtatcgcg aatgtcgttc cactctgaac acgccacctg
     3301 acaggcttta cagccgatac aggtggtgac gtcgatgagt ttcgccactt cttcctggaa
     3361 gtcccgcgcc tgaggcgcgg gggtcagacc gttagtcgcg gaacgacgaa tgatatcttg
     3421 agattgataa gccatatgtc gtctccgtta caccttttcc acattcacaa ggaaggactt
     3481 aaactccggc gtctgcgtgt tcgcatcacc aacgaatggc gttaaagtat tggcaataaa
     3541 gcctttttta gctacgcctt catagcccca gtgaatcgga ataccgatgg tatcgatatc
     3601 tttgccgttc gctttcagcg tgcgaatacg tttggtcacc accgctttgg ctttgatata
     3661 gccacggttg gaggagactt tcacggtatc gccctgggca atgccaagtt tattcgccag
     3721 cgactccccg atttccacaa actgctctgg ctgcaaaatc gcgttcaaca gcgcgtgttt
     3781 ggtccagtag tggaagtgct cggtcagacg ataggtggtt ccgacatacg ggaacttatc
     3841 ggctttaccc aatgcttcgg cgtcgtcttt aaagatacgt gcagccgggt tcgagataac
     3901 gtttggatgc agcgggttag ttcccagcgg cgtttcaaac ggctcgtagt gttccgggaa
     3961 cggaccttcc gccatcttat cgagggcaaa cagacgcccc atgccttcct gctgcatgat
     4021 aaacggcccg acgccgctac ccggaggcgc tgcgctgtag tccggaatat cccagccggt
     4081 ccacttagtg ccgtcccatt tcagcaactg acgcttcgga tcccacgggt taccctgcgg
     4141 atctgcggag gcgcggttat acagaatgcg gcggttaagc ggccatgccc atgcccagcc
     4201 cagcgtgtta ccgaggccag acggatcggc gttatcacga cgcgccatct ggttgccttc
     4261 cggcgtccag ctaccggcga aaatccagca gccacaggag gttgtaccgt catcgcgcaa
     4321 ttgggcgaac gagctaagtt gttggccttt cttgacgata accgcaccgg ttgccggatc
     4381 ggtaatatcg gccagcgcct taccgttgct ctccatcgct acttcttccg acttcggctc
     4441 atgcggaatg gcgtagttcc aggtcatgtt cagcacctga tccgggttcg cgccaccctg
     4501 ttcggcatac atcttgcgca agcgcaggaa gataccggag aggatctcac cgtcagtcag
     4561 cgcaatcccc ggggcgtccg cacctttcca gtgccactgc aaccagcgac ctgagttaac
     4621 gattgaaccg ttctcttctg cgaagcaggt cgatggcaga cggaacactt cggtctggat
     4681 cttcgacgag tcaacttcgt tcagctcacc gtggttctgc cagaagttag aggtttcagt
     4741 gttcagcggg tcgatggtga cgaggaactt cagtttcgac agacaaccga tcactttgtt
     4801 tttgttcggg aatgaggcaa cagggttaaa accctggcag atatagccat tgaccttgcc
     4861 ctctttcatc atctcgaagt attgcaggac gtcgtagcct ttatcccact tcggcaacca
     4921 gtcaaagccc cagctatttt ccgccgtcgc tttatcacca aagaaggcct tcatcataga
     4981 gacgaagaat ttcgggtagt tgccccagta gtttacctgg ccttccagca gcggttttgg
     5041 cgtgttggcg gtaaggtagg tttgcagatc ggtctgcttc tcgcttggca gcgtcatgta
     5101 acctggcagg ctctgcgaca gcagccccag gtccgtcagc ccctgaatat tggagtgacc
     5161 gcgcagggcg ttaacgccgc cgcctgccat ccccatattg ccgagcagca gctggatcat
     5221 cgccatcgta cgaatgtttt gcgcaccaac ggagtgttgc gtccagccga gggcatacag
     5281 gaacgaggca gttttatcgt gagcactggt ttctgcgatg tattcgcaga ctttcaggaa
     5341 cgcgtctttt ggcgtaccac agatgttttc aaccacatct ggcgtgtagc gggaaacgtg
     5401 ctgtttcagc aagttccaca cgcagcgcgg atgttgcagc gtggtatcgc gtttggcgaa
     5461 gccgttttcg tccagttcgt aagtccagga ggatttatcg tacttgcgtt tttccgcgtc
     5521 atagccggtg aacaggccat cttcaaagcc gtaatcctca cgcacgatca ggctggcgtt
     5581 ggtataggct tcggtgtatt cgcggttgaa tttttcattg ttcagcaggt acagcaatac
     5641 gcctgacagg aaagcaatgt cagtaccgga acgaataggg gcatagtagt cagctaccgc
     5701 cgccgtacgc gtaaagcgag gatcgatcac aatcagcttc gcgccgttgt gaattttggc
     5761 ttccatcgcc cagcggaacc cgaccgggtg agcttcagcg gcgttaccgc ccatcaccac
     5821 gacgaggttg gcgttcttga tgtcgaccca gtggttggtc atcgcaccgc gaccaaatgt
     5881 tggagcaaga cttgctaccg ttggtccgtg tcagacacgc gcctggttgt cgaccgcgag
     5941 catacccagc gcgcgggaga atttttgcgt taaatagccg gtttcgttac tcgacgcgga
     6001 agcacacagc atcccggtgg agagccagcg gttaacagtc acgccttcgg cgttttgcgc
     6061 aatgtagtta gcatcgcggt cttctttcat cagtttggcg atgcgatcaa acgcctcttc
     6121 ccaactgatt tgctgccatt tatcagaacc tggcgcacgg tattccggaa acttcagacg
     6181 gctttcggag tggatgaaat ccaccaggcc agcgcctttc ggacaaagtg caccgcggtt
     6241 gaccgggtga tccggatcgc cttcgatatg gaagatagat gctttggcgt tttttgctcc
     6301 gtcaccgagg ctgtacatca acagcccaca gcctacggaa caataggtgc aggtattacg
     6361 ggtttcgcgg gtgcgcagca gtttatactg ccgggtttcc gcgagtgcta cgctgggtgc
     6421 aaaacctagt gccgctgccg tggtgcctgc cataccgcca gcgcagatct taaagaactg
     6481 ccttctgctg acctgcatgg attgctcctt gtttcgacat tgtcacgtcc catttacatt
     6541 cgcttgctgc gtgtgcaggg agtgggagtt atttttcttt gcggaagggg ccgcaaaggt
     6601 ccagaattgg ctcaatttcc ctccatccag gaagggtttg taacagaata ccataatgtt
     6661 ggtgtgtgtg ttcttatctg gttaagagaa agtgaaaaaa acacagcgaa aagaaatcga
     6721 aaatgtgaca aatatcacag gtgttcgtca aattgagtta tggcggcgtg atgatttaca
     6781 acacccacgg ttagatgagg tcgcggaaga agttcccgtt gcgctggtct acaacggcat
     6841 ttcgcatgtg gtgatgatgg cgtcgcccaa agaccttgag tactttgcgc tcggtttttc
     6901 gctttccgag gggattatcg aaagtccgcg cgatatcttc ggcatggatg tcgttccttc
     6961 ctgtaatggt cttgaagtac aaattgagct ttccagccgc cgctttatgg ggttgaagga
     7021 gcgccgccgg gcgctggcgg gacgtacggg ctgtggcgta tgcggcgtgg agcaacttaa
     7081 tgacatcgga aaaccggtgc agccgctacc gttcacccag acgtttgatc tcaacaaact
     7141 ggatgatgca ttacgtcatc tcaacgattt tcagccagtg gggcaactga ctggttgtac
     7201 tcacgccgct gcctggatgt tgccatctgg cgaactggtc ggcgggcatg aagacgtggg
     7261 tcgccatgtg gcgctggaca aactgttagg ccgccggtca caagaagggg aaagctggca
     7321 gcaaggtgcg gtactggttt ccagtcgtgc cagttatgaa atggtgcaaa agtcggcgat
     7381 gtgcggcgta gagattttgt ttgcggtgtc tgccgcgacc acgcttgctg tagaagtggc
     7441 tgagcgctgt aatctgacac tggtaggttt ttgtaaaccg ggtcgggcaa cggtttatac
     7501 ccatccgcag cgtttgagca attaattaaa ataagtcctg cgatatatat taaattgcag
     7561 gacttattca tttcgtgaat tttattattt ttatttataa ataaaacgcg tgtagtggcg
     7621 ttttcttttt tcatttatta tgttcactct cttatctata tatttataag gcaattaaat
     7681 gaaaaggaat ttattatctt ccgctattat agtcgccatc atggccctcg gtctgacggg
     7741 ttgtgatgat aaaaaagccg aaacagaaac gcccccgcct gccaatagtc aacctgccgc
     7801 accagctcct gaagctcccg ttgcaaaagc agaagataaa cctgaaacac ctgcgcaacc
     7861 ggtggtcgat gaacaagcgg ttttcgacga aaaaatggat gtctatatca agtgctataa
     7921 caagttacag atccctgtac agcgcagtct ggcgcgttat gttgactggc tgaaagattt
     7981 taaacagggg cctaccggtg aagagcgtac tgtttatggc atctacggca ttagtgaatc
     8041 caacctcgct gagtgtgaaa aaggcgtaaa aagtgctgtg gcgttaacgc ctgcgctgca
     8101 accaattgat ggcgtggcgg tgagttatat cgatgctgcc gtggcgttgg gtaataccat
     8161 taacgaaatg gataaatatt acacccagga aaattataaa gacgatgcgt ttgcgaaagg
     8221 gaaaacgctg caccagacat tcttaaaaaa tctggaagcc tttgaacctg tagcagaatc
     8281 ttatcatgcg gcgattcagg aaattaacga taagcgccag cttgcggaac tgaaaaatat
     8341 tgaagaaaga gaagggaaaa tattccacta ctattctctg gcagtcatga tttcagcgaa
     8401 acaaattaat aacctgatat cgcaagagaa gtttgatgtt gatgcggcaa tgaagaaagt
     8461 gtctgaattg gaaacgctgg tggcgcaggc caaagaagcg gataaaggcg gcatgaattt
     8521 ctcgtttatt aattcggcag gccagtatca actcgaggct aaaaaatacg ttcgccgcat
     8581 cagagataaa gtcccgtact
//
LOCUS       DAJVUN010000166         8566 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.166, whole genome shotgun sequence.
ACCESSION   DAJVUN010000166 DAJVUN010000000
VERSION     DAJVUN010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8566
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.166"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(208..414)
                     /locus_tag="OQQ76_003285"
     CDS             complement(208..414)
                     /locus_tag="OQQ76_003285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfA family protein"
                     /protein_id="HCS1969670.1"
                     /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH
                     RVWSKTSDKPVWMEQAEKATGDFY"
     gene            727..816
                     /gene="kdpF"
                     /locus_tag="OQQ76_003286"
     CDS             727..816
                     /gene="kdpF"
                     /locus_tag="OQQ76_003286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HCS1969671.1"
                     /translation="MSAGVIAGVLLVFLLLGYLVYALINAEAF"
     gene            816..2489
                     /gene="kdpA"
                     /locus_tag="OQQ76_003287"
     CDS             816..2489
                     /gene="kdpA"
                     /locus_tag="OQQ76_003287"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706533.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HCS1969672.1"
                     /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTAGVER
                     ILFRLPGVSDHEMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA
                     LNTAVNFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFAFIRAFTRQSM
                     STLGNAWVDLLRITLWVLVPVALLIALFLIQQGALQNFLPYQAVNTVEGAQQLLPMGP
                     VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGD
                     RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGADSSINMEGKESRFGVLVSSL
                     FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF
                     IAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGP
                     HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV
                     SKKSQPASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS"
     gene            2512..4560
                     /gene="kdpB"
                     /locus_tag="OQQ76_003288"
     CDS             2512..4560
                     /gene="kdpB"
                     /locus_tag="OQQ76_003288"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HCS1969673.1"
                     /translation="MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSL
                     LTTCISIAMASGAMPGNALFSAAISGWLWVTVLFANFAEALAEGRSKAQANSLKGVKK
                     TAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG
                     ESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNE
                     IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV
                     AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLA
                     DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM
                     IRKGSVDAIRRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVK
                     GGIKERFAQLRKMDIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA
                     ESRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVALDSNPTKLIEVVHIGK
                     QMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNIMRLHSPDSAILSAVIFN
                     ALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV
                     "
     gene            4569..5112
                     /gene="kdpC"
                     /locus_tag="OQQ76_003289"
                     /pseudo
     CDS             4569..5112
                     /gene="kdpC"
                     /locus_tag="OQQ76_003289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308751.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
     gene            5105..7789
                     /gene="kdpD"
                     /locus_tag="OQQ76_003290"
     CDS             5105..7789
                     /gene="kdpD"
                     /locus_tag="OQQ76_003290"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdpD"
                     /protein_id="HCS1969674.1"
                     /translation="MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAE
                     AQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVLPPKRLAYRGRHICEFDLDAALARR
                     PALILMDELAHSNALGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI
                     QVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKAYIAGQAERAIEHFFRKGNLIAL
                     RELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASR
                     LGRVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE
                     HNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDSRSFK
                     DKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV
                     ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR
                     EQRTRHLYEMSKALAVGRSPQDIAATIEQFIASTFHARSQVLLPDDNGKLQPLTHPQG
                     MTPWDDTIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMI
                     PEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVL
                     FGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLT
                     LEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE
                     IGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIV
                     DVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM"
     gene            7786..8463
                     /gene="kdpE"
                     /locus_tag="OQQ76_003291"
     CDS             7786..8463
                     /gene="kdpE"
                     /locus_tag="OQQ76_003291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HCS1969675.1"
                     /translation="MTNVLIVEDEQAIRRFLRTALEGDGMRVYEDETLQRGLLEAATR
                     KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP
                     FGIGELQARLRVALRRHSATAAPDPLVKYSDVTVDLAARVIHRGEEEVHLTPIEFHLL
                     AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETS
                     IGYRFML"
BASE COUNT         1839 a         2214 c         2446 g         2067 t
ORIGIN      
        1 gctgacaggc aaaaccctac agatttataa gaaagcctta agtgagatat ccatcagata
       61 gaaacaatta ggaaaatatt tatatatttt tcctgaatat atttcagctg ggtaatacca
      121 tatctaaata tttacctgaa catcttccta ataaaaaaac cgccagcatc tccactagcg
      181 gttttcaatg tattcaaaac tcggcaatca gtaaaaatca ccggttgcct tttcggcctg
      241 ttccatccaa accggtttat cgctggtttt cgaccagacg cggtgcaggt agctgtaaaa
      301 gcgggcgcgg tctttccaga aaagcatgaa aggcagcgcc agaacgcccg ctgcaaccgc
      361 atatgtacgg cgtaaaaaga taagccatgc aggatattct ctgtagagtt ccatactttt
      421 ctcccccttt tgtatctacc cggtgaatag caccggaaaa atgaatttgt ttatctgatg
      481 aaaatagtac tgccttttgt gtaattttac tactcatccg accacttatt tttgcttatt
      541 gatggtttat ttacattcac tctgtaatta agttacacaa aagttaaatc gatgctaaac
      601 attagttaaa tcatggcttt tgccattttt atactttttt tacaccccgc ccgcagattt
      661 ttgcgaaatc tttgcagcca gaattctact cttccggtat cacttttagg ccactggagg
      721 tgcactgtga gtgcaggcgt gatagccggc gtgttgctgg tgtttttatt actgggttat
      781 ttggtttatg ccctgatcaa tgcggaggcg ttctgatggc tgcgcaaggg ttcttactga
      841 ttgccacgtt tttactggta ttaatggtgc tggcgcgtcc tttaggcagc gggctggcgc
      901 ggctgattaa tgacattcct cttccaggta cagcgggcgt tgaacgtata ctctttcgtt
      961 tacctggcgt ctctgaccat gagatgaact ggaagcaata tctttgtgcc attctcggcc
     1021 tgaacatgct ggggctggcg gtgctgtttt ttatgttgct cggtcagcac tatctgccgc
     1081 ttaatccaca gcagttgccg gggctgtcgt gggatctggc gctgaatacc gccgtcaact
     1141 ttgtcacgaa taccaactgg caatcttata gcggtgaaac cacgttgagc tatttcagcc
     1201 agatggcagg cttaacggta caaaactttc tttctgccgc cagcgggatt gcggtgattt
     1261 ttgccttcat ccgtgcgttt actcgccaga gcatgagcac actcgggaat gcctgggtcg
     1321 atctgctacg catcacgtta tgggtgctag tccctgtggc gttgttgatc gcactgtttc
     1381 ttattcaaca aggtgcgctg caaaactttc tgccctatca ggcagtgaat accgttgaag
     1441 gagcgcaaca gctgttaccc atgggaccag tagcttctca ggaagcgatc aagatgctcg
     1501 gtactaacgg cggtggcttc tttaatgcca actcgtcgca tccgtttgaa aacccaaccg
     1561 cactgaccaa cttcgtgcag atgctggcga tcttcttgat cccaacagct ctgtgctttg
     1621 cctttggtga agtgacgggc gatcgccgcc aggggcgcat gttgctgtgg gcgatgtcag
     1681 tgatttttgt catctgcgta ggcgtggtta tgtgggcaga agttcagggt aatcctcatc
     1741 tgctggcgct cggcgcagac agcagcatca atatggaagg taaagagagc cgtttcggcg
     1801 tgctggtcag tagcctgttt gcggtcgtga ctacggcggc gtcctgtggc gcggtgattg
     1861 cgatgcatga ttcgtttacc gctctcggcg gcatggtgcc gatgtggcta atgcaaattg
     1921 gtgaagtggt gttcggcggt gtcggttctg gtctttacgg catgatgctg tttgtcctgc
     1981 tggcggtgtt tattgccggg ctgatgattg gtcgtacacc ggaatatctg ggtaaaaaaa
     2041 tcgacgtacg cgagatgaaa ctgactgcac tggcgattct ggttactcca acactggtac
     2101 tgatgggcgc ggcgttggca atgatgaccg acgccggacg tagcgccatg cttaaccctg
     2161 gcccgcatgg ttttagcgaa gtgctgtacg ccgtgtcgtc cgccgctaac aacaacggca
     2221 gcgcctttgc cggattaagc gccaactctc cgttctggaa ctgtttactg gcgttctgca
     2281 tgtttgtcgg tcgcttcggg gtgattatcc cggtgatggc aattgccggt tcgctggtga
     2341 gtaaaaagag ccaacccgcc agctccggca cgctgccaac gcacggcccg ctgtttgttg
     2401 gcctgttaat cggcaccgtg ttgctggttg gcgcactgac ctttatccct gccctggcgc
     2461 ttggtccggt ggcggaatat ctctcctgat gatattgagt gagcactgaa tatgagtcgt
     2521 aaacaactgg cgctattcga accaacactt gtcgttcagg cgctgaaaga agcggtgaaa
     2581 aaattaaacc cgcaggcgca atggcgcaat ccggtgatgt ttatcgtctg gatcggcagt
     2641 ctgctgacca cctgtattag catcgcgatg gcaagcggtg cgatgcctgg caatgcgctg
     2701 tttagcgcgg caattagcgg ctggctgtgg gtcaccgtac tgttcgctaa tttcgccgag
     2761 gcgctggcag aaggccgcag taaagcgcag gccaacagtc ttaaaggggt gaaaaaaact
     2821 gcctttgccc gcaagctgcg tgagccgaaa tatggcgctg cggcggacaa agttcctgcc
     2881 gatcaactgc gtaaaggtga catcgtgctg gtagaagctg gcgatattat cccctgcgat
     2941 ggtgaagtca ttgaaggcgg cgcatcggtc gatgaaagcg ccatcaccgg ggaatcggca
     3001 ccggtgatcc gtgaatccgg cggcgatttt gcctccgtca ccggcggcac gcgtattctt
     3061 tctgactggc tggtgattga gtgtagcgtt aaccccggtg agacatttct ggatcggatg
     3121 atcgcgatgg tggaaggcgc acagcgacgc aaaacaccga acgagattgc cctgactatc
     3181 ctgctgattg ctctgaccat cgtcttttta ctggcaaccg ccacgctgtg gccgttttcc
     3241 gcgtggggcg gtaatgcagt gagtgtaacg gtactggtgg cgctgctggt ctgtctgatc
     3301 ccaaccacta ttggcggcct gttgtcagcg atcggcgtcg ccgggatgag tcggatgctg
     3361 ggcgcgaatg tgattgccac cagcggacgt gcagttgaag cggcaggtga cgttgacgtt
     3421 ctgctactgg ataaaaccgg caccatcaca ctcggtaacc gtcaggcgtc ggagtttatc
     3481 cctgcgcagg gcgtggatga aaaaacgctg gctgacgccg cacaactggc ttcgctggct
     3541 gatgaaacgc cggaaggccg cagtattgtg atcctcgcca agcaacgttt taacctgcgc
     3601 gagcgcgatg tgcagtcgct ccatgccacc tttgtaccgt ttactgcgca aagccggatg
     3661 agcgggatca acatcgacaa ccgcatgatc cgtaaaggtt ctgtcgatgc cattcgccgc
     3721 catgttgagg ctaacggcgg tcacttccct gccgatgttg atcaaaaagt cgatcaggtt
     3781 gcgcgtcagg gggccacgcc gctggtggtg gtggaaggtt cccgtgtgct gggcgttatt
     3841 gcgctgaaag atatcgtcaa aggcggtatt aaagagcgct tcgcccagct gcgcaaaatg
     3901 gacattaaaa cggtgatgat taccggcgat aaccgtctga ctgccgccgc cattgctgcg
     3961 gaagcgggcg tcgatgattt tctcgccgaa gcgacaccgg aggccaagct ggcattgatt
     4021 cgtcagtatc aggcggaaag ccgtttggtg gcgatgaccg gcgacggcac caacgatgct
     4081 ccggcgctgg cgcaagcaga tgtcgcggtg gcgatgaact ccggcaccca ggcggcgaaa
     4141 gaggcgggca atatggtcgc tctcgactct aacccgacca agttgatcga ggtggtgcat
     4201 attggcaaac agatgctgat gacccgtggc tcgctgacca ccttcagcat tgccaacgat
     4261 gtggcgaaat acttcgccat tattccggcg gcgttcgcgg caacgtatcc gcagttaaat
     4321 gcgctgaaca tcatgcgcct gcattcgccc gactccgcca ttctcagtgc agtcattttc
     4381 aacgccttga ttatcgtctt tttgattcct ctggcgttaa aaggcgtgag ttataaaccg
     4441 cttaccgctt ctgccatgtt gcgccgtaac ttatggattt acggtctggg tgggctgctg
     4501 gtgccgttta ttggtatcaa agtcattgat ttactgctga ccgtttgcgg tctggtgtga
     4561 ggtttaccat gcgtggctta cgtccggcat tatcgacatt tatctttctg ttattgatta
     4621 ctggcggcgt ttacccgctg ctgaccaccg tgctggggca atggtggttt ccctggcagg
     4681 ccaacggttc gttgattcgt gaaggtgata cggtgcgggg ttcggcatta atcgggcaga
     4741 attttaccgg caacggcaga aatgccctat aatccacagg cttctggcgg gagcaatctg
     4801 gcggtcagta accctgagct ggataaacaa atagccgcac gcgttgctgc attacgggcc
     4861 gctaacccgg atgccagtac gaacgttccg gttgaactgg tgacggcatc ggcaagcggg
     4921 ctggacaata atatcacccc gcaagcggcg gcctggcaga tcccacgcat cgcgaaagcg
     4981 cgtaatctca gcgttgaaca gctcacgcag ctgatcgcaa aatacagcca acaaccgctg
     5041 gtgaaatata tcggccagcc ggtcgtcaac attgtcgaac tcaatctggc gctggataag
     5101 cttgatgaat aacgaaccct tacgtcccga ccccgatcgt ctgctggaac aaactgccgc
     5161 gccgcatcgg gggaagctga aagttttctt cggtgcctgt gcaggcgtcg ggaagacctg
     5221 ggcgatgctg gcagaagccc agcgactgcg ggcgcaaggg ctggatattg tggttggcgt
     5281 ggtagaaacc cacgggcgaa aagataccgc cgcaatgctg gaagggctgg ctgttctgcc
     5341 gccaaaacgc ctggcgtacc gtgggcggca catctgcgag tttgacctcg atgccgccct
     5401 cgcccgccgt ccggcgctga tcttaatgga cgaactggcg cacagtaatg cgctaggttc
     5461 tcgtcaccct aaacgctggc aggacatcga agagctgctg gaagcaggca ttgatgtttt
     5521 cactaccgtc aacgttcagc atctggaaag tctgaatgat gtggtcagcg gcgtcaccgg
     5581 aattcaggta cgggaaaccg tgcccgatcc ttttttcgat gccgccgacg acgtggttct
     5641 ggtggacttg cccccggacg atctgcgcca gcggctgaaa gaaggcaaag cctatattgc
     5701 cgggcaggcg gagcgcgcca ttgaacattt tttccgcaaa ggcaatctga tcgccctgcg
     5761 cgaactggca ctgcgccgta ctgccgatcg cgttgatgaa caaatgcgcg cctggcgggg
     5821 gcatcctggc gaagagaaag tctggcacac gcgcgacgcg atccttttat gcatcggcca
     5881 taacaccggt agtgagaagc tggtccgcgc ggcggcgcgg ctggcgtcac ggctgggtag
     5941 agtctggcac gcggtgtatg ttgaaacccc tgccctgcac cgcttaccgg aaaaaaaacg
     6001 tcgggcaatt ctcagcgcct tacgtctggc gcaggagctg ggcgcggaga cggcaacact
     6061 ttctgatcca gcggaagaaa aagcagtagt gcgttatgcc cgtgaacata atctcggcaa
     6121 gattattctc ggtcgcccgg cctcgcgccg ctggtggcgt cgggaaacgt ttgctgaccg
     6181 actggcgcgc atcgcccccg atctcgatca ggtgctggtc gcgcttgatg aaccacccgc
     6241 ccgcacgatt aacaacgcgc cggatagccg ctcttttaaa gacaagtggc gggtacagat
     6301 tcagggatgc gtggttgccg ccgcgttatg cgccgttatc actttaattg ccatgcagtg
     6361 gctgatggcg tttgatgccg ccaacctggt gatgctgtat ctgcttggcg tggtggtggt
     6421 ggcgctattt tatggacgct ggccttcggt ggttgctacc gtcattaatg tggtgagttt
     6481 cgatctcttt tttatcgccc cacgcggcac gctcgccgtc tctgatgtgc aatatctgct
     6541 gaccttcgca gtgatgttaa ccgtcgggct ggtgatcggg aaccttactg ctggcgtgcg
     6601 ttatcaggcg cgggtagccc gttaccgcga gcaacgcaca cggcacttat atgaaatgtc
     6661 gaaagctctg gcggtgggcc gcagtccgca ggacatcgcc gccaccatcg aacaatttat
     6721 tgcctccacg tttcatgccc gcagtcaggt gttgttgccc gatgacaacg gtaaattgca
     6781 gccgttaaca catccgcaag gaatgacgcc atgggacgat accatcgcgc agtggagttt
     6841 tgataaaggc ctgcctgcgg gcgcgggcac cgacacgtta cccggtgtac cgtaccagat
     6901 tttgccgcta aaaagcggcg agaaaaccta cgggctggtg gtggtggagc cggggaatct
     6961 gcgccagttg atgatcccgg aacagcagcg cctgctggag acgtttacgc tgttagtcgc
     7021 caatgccctt gagcggctga cgctaaccgc cagcgaagaa caggcgcgga tggcaagcga
     7081 acgtgaacag atccgcaacg ccctgctggc agcgctttcg catgatttac gcacgccgct
     7141 cacggtgctg ttcggtcagg cagaaatctt aacgctcgat ctggcaagcg aaggatcgcc
     7201 ccacgcccgc caggccagcg agattcgtca gcatgtgctg aacactaccc gactggtgaa
     7261 taatctactg gatatggcgc gaattcagtc cggcggcttt aatttgaaga aagagtggtt
     7321 aacgctggaa gaagtggtcg gtagcgcgct gcaaatgctg gaaccgggtt tatcgtcgcc
     7381 catcaatctt tctctgccag aaccgctgac cttaatccac gttgacgggc cactctttga
     7441 acgggtgctg attaatctgc tggagaacgc ggtgaaatat gcgggtgcgc aggccgaaat
     7501 tggtatcgat gcccacgttg agggcgaaaa tctacaactg gatgtctggg ataacggccc
     7561 cggtcttccg ccaggccagg agcagacgat atttgataag tttgctcgcg ggaataaaga
     7621 gtcggcagta ccgggggtag ggcttggact ggcaatttgt cgggcgatag tggatgtaca
     7681 cgggggcact attaccgcgt tcaaccgacc ggaaggtggt gcctgttttc gtgttacact
     7741 tccccagcaa actgcccctg aacttgaaga atttcatgag gatatgtgac aaacgttctg
     7801 attgttgaag atgaacaggc tattcgtcgc tttctgcgca cggcgctgga gggcgacggg
     7861 atgcgcgtct atgaggacga aacgctgcaa cgcggcttgc tggaagcggc tacccgtaag
     7921 ccagatttga ttattctcga tctcggcctg cccgatggtg atgggattga gtttatccgc
     7981 gacctgcgcc agtggagcgc ggtgccggtg attgtgcttt ccgcacgcag cgaagagagc
     8041 gacaaaatcg ccgcgctgga tgccggagcg gatgattatc tgagtaagcc gtttggcatt
     8101 ggcgaattgc aggcccgtct gcgcgtcgct ttacgccgcc actccgccac cgccgcgccc
     8161 gatccgctgg tgaaatattc cgatgttacc gtcgatttag ccgcccgcgt gattcaccgg
     8221 ggtgaggaag aggtgcatct cacaccaatt gagttccacc tgctggcggt gctgctcaac
     8281 aatgccggaa aagtactcac ccagcgccag ctccttaacc aggtgtgggg gccaaacgcg
     8341 gtcgaacaca gtcactattt gcgtatttat atgggacatc tgcgacaaaa actggaacag
     8401 gatcccgccc gcccacgcca tttcattact gaaaccagta ttggctatcg gtttatgctt
     8461 tgaatattaa ttttaataca gcctgccttt tattaattaa agccgtaata ataaatacgg
     8521 ctttttatct taaacaacac acaaaaataa caattcaata ttttat
//
LOCUS       DAJVUN010000167         8560 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.167, whole genome shotgun sequence.
ACCESSION   DAJVUN010000167 DAJVUN010000000
VERSION     DAJVUN010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8560
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.167"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..394)
                     /locus_tag="OQQ76_003292"
                     /pseudo
     CDS             complement(1..394)
                     /locus_tag="OQQ76_003292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151035092.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
     gene            complement(580..3888)
                     /gene="icsA"
                     /locus_tag="OQQ76_003293"
                     /gene_synonym="virG"
     CDS             complement(580..3888)
                     /gene="icsA"
                     /locus_tag="OQQ76_003293"
                     /gene_synonym="virG"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane autotransporter IcsA"
                     /protein_id="HCS1969676.1"
                     /translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
                     LGGPIAFAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
                     RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
                     DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
                     GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
                     LSIINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
                     SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
                     GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
                     VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
                     ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGLTNINAGILKMGTVEAMTRTA
                     GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
                     NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEITGHASGITYVAVTNEG
                     GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
                     NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
                     SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
                     TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
                     YMDAWLQYGWFNNTVKGDGVTGEKYSSKGITGALEAGYIYPTIRWTTHNNIDNALYLN
                     PQVQITRHGVKANDYIEHNGTMVTSSGVNNIQAKLGLRTSLISQSCIDKETLRKFEPF
                     LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
                     YRDTQGILGVKYTF"
     gene            4417..5619
                     /gene="virA"
                     /locus_tag="OQQ76_003294"
     CDS             4417..5619
                     /gene="virA"
                     /locus_tag="OQQ76_003294"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858314.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-tubulin-specific protease"
                     /protein_id="HCS1969677.1"
                     /translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDVLLKIITFG
                     IYSPHETLAEKYSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
                     DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
                     CCTSIIPNDDYFPVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
                     LGINEFIDSKKELQMLSYNQVNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
                     AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
                     SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
                     FAIISPDV"
     gene            5798..6485
                     /locus_tag="OQQ76_003295"
                     /pseudo
     CDS             5798..6485
                     /locus_tag="OQQ76_003295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     misc_feature    6078..6194
                     /locus_tag="OQQ76_003295"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01497"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="AL1L pseudoknot; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /pseudo
                     /db_xref="RFAM:RF01497"
     gene            6487..6853
                     /locus_tag="OQQ76_003296"
                     /pseudo
     CDS             6487..6853
                     /locus_tag="OQQ76_003296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            6856..7254
                     /locus_tag="OQQ76_003297"
                     /pseudo
     CDS             6856..7254
                     /locus_tag="OQQ76_003297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708749.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            8092..8373
                     /locus_tag="OQQ76_003298"
     CDS             8092..8373
                     /locus_tag="OQQ76_003298"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969678.1"
                     /translation="MIFFDEEEAEVLRFDNFDDAVECCADLNIPFFVDAGNKKLVFWF
                     VRVDDEGYPEIARCTEREFATIPAGINADGMYCPECGTVHWPDGVIPPF"
     gene            8415..8560
                     /locus_tag="OQQ76_003299"
                     /pseudo
     CDS             8415..8560
                     /locus_tag="OQQ76_003299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
BASE COUNT         2493 a         1965 c         1746 g         2356 t
ORIGIN      
        1 ttcaggctgt acgcttcccc atgtgatttg cctcgccact tcaccgggct caggaccccg
       61 taggatcttc accgaaaaaa atgcatcacc agttgcttta ttatttgttt taggtagacc
      121 tgttactaat ttatacctac tctgaccaag tctggataag aaaggcacac ctgcacattt
      181 ctacttggaa atgttttctt ttaccatttt gctcaaaaat ttcaacatcc aatattcctc
      241 gtacagaact actcaagtcc tgaatagaaa aagttccagc tggtacagta gagtcatata
      301 ttactcgacc ttgttgagat acaacaacac gtgcattagt ttctgcaata ccagtaatct
      361 gaggcgcata accacgaata tttggcggta gcattcgttc atcgctttct aatgcaattc
      421 ctgtgtaacg ccaagcaaca gcgcattctg gcgcatgatc tggtaaacac gtttggcatt
      481 gatcgcaggc ataccatcat gtgcacaaaa acccaccgag cttttacacg gtgggtccca
      541 gagaaatgca ggacatcaac acgccctgca tttttattat cagaaggtat atttcacacc
      601 caaaatacct tgggtgtctc tgtaactgtt attacccaat tgctgagata cgtttcccca
      661 gatgcttagg ttatctgcaa gacgcccccc cacaccagtt ttgagttcaa tcacattacg
      721 gttgcctatc tggtgatttg acatgccatt cataattaca ccatattgct ttgagctcca
      781 tttccaattc acttccaaaa atggttcgaa cttacgaaga gtctccttat cgatacaact
      841 ctgactaatt aaggatgtac gcaatcccaa ttttgcttga atattattga ccccagagga
      901 tgtgaccata gtgccattgt gttcaatata gtcgtttgct tttaccccat gcctagttat
      961 ctggacttgt ggattgagat acaatgcgtt gtcaatatta ttatgagtag tccagcgtat
     1021 agttgggtag atatagccag cttccaaagc tcctgttatt cctttgctgg aatatttctc
     1081 accagttacc ccatctcctt tgactgtatt attaaaccaa ccgtactgca accaagcatc
     1141 catatataga cctgttcgtt ctttttcatc ctgaaaccaa gaactgtaca aaccggcagt
     1201 ataaccgctc acagttcctc gtgaactata actagtatac ttattatgag ttttgctatc
     1261 ctgatatcca taagctccca taatacccac atgcaagcca tcatgatcag tgaagtttgt
     1321 cttcaaaata tctccaccaa tctgataaac catcctgtta gctgtggttt ttaattgtct
     1381 atcagctaaa ttatgctcat tatgtccacc aacagtacga atccacatgg tggtttcgct
     1441 gagctgacct gtagtaggat caacaatagt gctaccgtgt cggtcataga gagaaggact
     1501 aaacatcgtg ttcattgcta tcaggttagc aatataactg ccagcttcag ggcgccatgt
     1561 gtgaatacta ccttcaccca aattaagtga agatacaagc tgtgaactag ctcggcgact
     1621 actcatttga gtagactctt gattgctcat ctgttttgat tcttgattat ccatctgact
     1681 agttagatac cacttattgg tattcagtcc agatacagtg ccctgtttca ggcgatagtc
     1741 ataactacca gcaacaatac ggcctttctg aataaaagca ttcttatcag aagaatctgt
     1801 cgaaataatt tgaacacctt caagagtttt atctccagag cctccctcat ttgtcactgc
     1861 aacataggta ataccagacg catggcctgt aatttccagc cggtcagttt tactgttgtc
     1921 attgccgaga accgcgccca aagataatat tccgcccttt ccatgccaat tacctttctg
     1981 aacataggtc tgaccgacat ttgacgaact attattgaga ataacatgac cgtttttctc
     2041 cagagtcatg ttacctgtga caatgacggg gtcaggcaaa aaaggggcat taatattatt
     2101 gattagcaca gtcccactat ttaataaagt gttaacagtt tggttcatgc ctgaaaaatt
     2161 caaggtagca cctttattaa caataacacc agcggtacgt gtcatagctt caactgtccc
     2221 catttttaga atgcctgcat tgatgttggt gagaccagag taggtatttt tttccgccaa
     2281 aatgagagtt ccctcccctg attttgttag ggattttccg tcccagctat ttatattatg
     2341 atggctgaga ttatctgcca gaatagtact aacagtaagt tcagcgtttt ctttcagatt
     2401 gaactctcca tgactgtcgc catctgtatc attccagctc aaaccgtaga tcaatttatt
     2461 ctggtcactg atatagcttt ttgtatagtc aatagcacca gtagtgagta acggattgat
     2521 gatagatata ttagaaacac tgaaacctgt tatcccttta tctgcactta gcagtttata
     2581 gtccttctgc gcccagttat ttataatagc ttccactttt acattgttgc caaatgacat
     2641 atttccagaa gcttccagac tactgattcc agctaaattt aaagaactgt tctcaccaaa
     2701 agaaacgtca cctgaaacag tgaatttgtt acctgatagt gaaacagttg tacaatcacc
     2761 agcacataaa tcaccttcaa tagttggtgt ggtcccagtg taatcattgt tgataatttt
     2821 cagaatggat gaattgttaa cctgtacatc accagtaatg acagaacctt catggagtat
     2881 taatgaattg tttccaccag tgatgtggat agcattacct gctacatttt gtgttccatc
     2941 atcttcttta cctgaaatta tatatccgct attagcaatg gtcatattgc taccatttat
     3001 agcatccccc caatgtccac cattaccgcc taaaatagct ccattgttga ttatagacag
     3061 gttatctcct gtgatagcat taccaccgta gccatcataa ccataaccgt aagcagcacc
     3121 tccgttgcct ccagcgaacg tgcccttatt gattacagag aggctgcttc ctgtgatggc
     3181 atcacctcca ttaccgccat caccctcacc ataattgtta cctccattac caccggaaat
     3241 agtccctttg ttgattatgg gtagattgac tcctgtgacg gcatcacctc cattcccccc
     3301 atcactatca ctataactat cgccaccatg tccacctgaa ataatttctc catttattat
     3361 aaacagattg tctcctgtaa cagcctcacc accatcaccg ttatggtcag caccgctacc
     3421 gccgctacca ccaagaatca tgccttgatt gattatagac aagtcagatc cggtaataga
     3481 gtcaccacca ttaccgccac aactattacc atcattatta tcaccagcac caccatgacc
     3541 tgcgctaatc ataatatcag agttaatccg tagcttagtt ctagatgcat gagaggggtt
     3601 ggaagaagtt atataccacg catccattcc atcttcacca gctcccaagg gagaaagtcc
     3661 atcaacaggt gttaataatt tttcataatt gtcctctgaa aaatgaagtt cttgagtacc
     3721 cgaaagagga atagcaaaag ctattggccc cccgagcaac agggatgcac caacaacaaa
     3781 aggagaaaaa gacaatttgc atgttttttc ctttaccgta ggtaattctc cggccccccc
     3841 ctgtgaacat tgggtcatat tacaaaaaaa tttgtgaatt tgattcatgc actatattat
     3901 cagtaagtgg ttgataaacc cctaaaaaga ttccgtttta tccggaataa agggacgata
     3961 tatgcaaaaa catattaaac aaagcctcaa ccaaaacatg agagctgtgt tatatatcaa
     4021 tgcaacggga gaaatttacc tgtgtcttgc tttgaaaaaa agagggggaa agctatatgt
     4081 tcgataataa attaataatt ttactatgat agtctgcttc agaccgcaac ttttcagttc
     4141 tttctgtacg cttgcccaaa gtttaaccac tttgtttttc tatacaccca atggttctat
     4201 ctgccccttg atgttaatcc ccaaagccaa taacatgaat gtattcatat cacaactttc
     4261 ctaccagact ctccaatgca ataactgcat aattgttttt agtggaaatg tatcgttttc
     4321 ttaaagagaa gaataacatt ccattttatt atgttcccaa tttaattata ttaatatata
     4381 ttggcatcaa taggaaaata catcaggaga aatcaaatgc agacatcaaa cataactaac
     4441 catgaaagaa atgactcatc atggatgtca actgtcaaat caactacaga agtaagttgg
     4501 aataaattga gtttttgtga cgttttactg aaaataataa ctttcggaat atattctcca
     4561 cacgaaactc tagccgaaaa atatagcgaa aaaaaactaa tggatagttt ctcaccatca
     4621 ctatcacaag ataaaatgga cggagagttt gcccacgcaa acatagatgg catttcaata
     4681 cggctatgcc ttaacaaagg catatgttcg gttttttatc ttgatggaga taaaatacaa
     4741 tccactcaac tttcatcaaa agaatataat aacttgttaa gttcactccc ccccaaacaa
     4801 ttcaacttag gaaaagtaca tactattaca gctccggtat cagggaattt taaaactcac
     4861 aagcctgcac cagaagttat tgaaacagcc attaattgct gtacatcgat aataccaaac
     4921 gatgattact tccccgttaa agacactgat tttaatagtg tttggcatga tatttacaga
     4981 gatattcgag catctgacag caatagtaca aaaatatatt tcaacaatat tgaaatacca
     5041 ctaaaattaa ttgcagatct aattaatgag ttagggatta atgaattcat tgatagcaaa
     5101 aaagagcttc aaatgctaag ttacaaccaa gtaaataaaa taatcaattc aaacttcccc
     5161 caacaagacc tatgttttca aacagaaaaa cttttgttta cttcactctt tcaagaccct
     5221 gcatttatat ccgcactaac atctgcattc tggcaatctc ttcacatcac gtcttcctct
     5281 gtggaacaca tatatgccca aattatgtcc gaaaacatag aaaacaggct taatttcatg
     5341 cctgaacaac gagttattaa caattgtgga catattataa aaatcaacgc agttgtccct
     5401 aaaaacgaca ctgcaatctc tgcctctggg gggagggctt acgaagttag ctcatcaata
     5461 ttaccatcgc acataacatg taatggtgtt ggtattaata aaatagaaac aagctatctc
     5521 gttcatgctg gaacacttcc aagcagtgaa gggcttcgca atgctatccc tccagaaagt
     5581 cgtcaagtat catttgccat catatctcct gatgtttaag ccaatattat attggctgcc
     5641 agactgtaaa aaaacgttct tcagaacagc tctataaact attaaaccaa agctaaaagg
     5701 atggggacca atagaatctc agcccatcct ttttatatca ttatgaaccg ccccggaaat
     5761 cctggagact aaactccctg agaaagaggt aaacaggatg actaaaaata cacgtttttc
     5821 ccctgaagtc cgtcaacggg cagttcgtat ggttctggaa agtcagggcg aatatgactc
     5881 acaatgggca gcgatttgtt ccattgctcc aaagattggc tgtatactgg agactctgcg
     5941 tgtctgggta cgccagcatg agcgggatac cgggggcggt gaggtgggct caccaccgct
     6001 gaacgtcagc gtctgaaaga gccggaacgt gaaaatcgtg aactgcgccg cagtaacaat
     6061 atccttcgcc tggcttccgc ttattttgca aaggcggagt tcgaccgcct ctggaaaaaa
     6121 taatgccact gctggataag ctgcgtgagc agtacggggt cggaccggta tgcagtgaac
     6181 tgcatattgc cccgtcaacg tattaccact gtcagcaaca gcgacatcat catgataaac
     6241 gcagtgcccg tgcgcagcgc gatgactggc tgaagaaaga gatactgcgc gtatacgatg
     6301 agaatcatca ggtatacgct gtgcgtaaag tcaggcatca gttgttacgg gaaggtatca
     6361 gagtggccag atacactgcg gcacgtctca tggcggttat ggggcttgcc ggtgttctcc
     6421 ggggtaaaaa ggtccacact accgtcagcc ggaaagccgt tgccgcaggc gaccgcgtaa
     6481 accgtcatca aggcaatgtg ccgcgtactc cgggtggccc gcagcggctg gtatacgtgg
     6541 tgtcagcggc ggacaaggat aaacacacgt cagcagttcc gtcagcactg cgacagcgtt
     6601 gtccgcaagg cttttaccca gtccagcgtt acggtgcccc acgcctgacg gatgaactgt
     6661 gtgctctggt taccacttta acgtaaaaac cgtggcagcc agtctgcgcc gtcaggaact
     6721 gagcgcaaaa gcctcccaga agttcagccc gatcagttac cgtgcacacg gcctgcctgt
     6781 atcagaaaat ctgctgacgc aggattttta cgccagtggc ccgaaccaga agtgggcggg
     6841 agacatcacg tactattaca gctcaccgac tgcggggaaa cacggggcgc cgggttattg
     6901 aaggtgacct gtccagctac ttcgacacag tacatcaccg gctgctgatg aaagccgtct
     6961 gccgcaggat cagtgatgca cgttttatga gactgctgtg gaaaacgccg tgttgatgtt
     7021 ggtctcttcc gggcggtcag tgaaagtatg ccacaggtcg gtgtgatctc gccgttgctg
     7081 tcgaacatca tactgaatga gttcgaccag tatctgaata aacgctacct gagtggaaaa
     7141 gccagaaagg atcgctggta ctggaatcac agtatccagc gaggccgaag tactgctgtc
     7201 aaagaaaact ggcaatggaa acctgccgtt gcttactgtt gctatgccga tgactgtgtg
     7261 ccacgaaggc gcgtcctggg gacgtgagtc cctgtgcagc catgcggcac aagagatgag
     7321 ggaaggcccc tcggtgtcgg cgtgcaggcg caggcaccaa accatccact gctgctgcat
     7381 ttaagagatg tggtggtgag caagatggga aaaggtcgga cgtgagccga tcaggtatgg
     7441 ttcgaagaga cgaacgaaag tgaaccgctg atgatgtgtc gaaagcatat agatgatgtc
     7501 aaaacaatgg tggagtcgtt cctgtgggat atgtttactg cctgcgcggc atccggaata
     7561 aaagcggcgt gaagtcgatt caggctcttg tggggaacgt ggacctgtca ccccgatgtg
     7621 aagggagaag cgcaagtgga agccccatga gcgccagagt accaatgcgg ggtacaggga
     7681 cggagcacca agcgattgcg cagtaaacat gcttgacaac ttaattgggg ccccctcttc
     7741 cttttatggt gtaattgttt gattgaatac ttccggggat ttcagtatga aatgaagtat
     7801 atttaatata ctttacaaaa agtttgtatt agtggaataa ggacaatagt ttatccaaac
     7861 tgccaagccc ctttattata agtaagatct ggtactaaat aagcgttcta aaccgccccg
     7921 agtaggcggc ctgacggctg cggcttgtca tggcctgtga ttaccgttat aaaaacagac
     7981 aatatcattg tctttcaggt agttatatgg cccgttcagc taaaccacgc aaacgaaaac
     8041 ctgcacctca aagaagcaaa ctcctccgct atgtcgtaaa acttcacgaa gatgattttt
     8101 tttgacgaag aagaagctga ggttctgcgc tttgataatt ttgacgatgc cgttgagtgt
     8161 tgcgcagacc tgaatattcc gttctttgtg gatgccggaa acaaaaaact ggtcttctgg
     8221 tttgtacgtg ttgatgacga agggtatccg gaaattgccc gctgcacgga gcgggaattt
     8281 gcgacaattc ctgccggtat caacgccgac ggcatgtatt gccctgaatg cggtacggtt
     8341 cactggccgg atggcgttat tccgcctttc tgatgcttcc ccgttttgcc gatatttttc
     8401 agcagggaaa ccgatggctt aactggctgg agaagcagcc ggtgcagatg agcagcctgg
     8461 aacattatgc cggtcaggat gaaattggcc tgcgttacaa cagccaccgg acaaaacgag
     8521 aagaaaacct tgtgatgagt ggcgacgagt ttatggaaag
//
LOCUS       DAJVUN010000168         8538 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.168, whole genome shotgun sequence.
ACCESSION   DAJVUN010000168 DAJVUN010000000
VERSION     DAJVUN010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8538
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.168"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..377)
                     /locus_tag="OQQ76_003300"
     CDS             complement(<1..377)
                     /locus_tag="OQQ76_003300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001764249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969679.1"
                     /translation="MRALLTPEIAPRMGIVLFRPGSELMPLFMQGRVLLEPEPERYSS
                     FASGAVPAASQPLADDPAVRAVFRHEAVIRRAGGVECLESWLLREKGCQWPHSDWHSE
                     NMTTMRHAPGAIRLCWHCDNLLR"
     gene            complement(430..687)
                     /locus_tag="OQQ76_003301"
     CDS             complement(430..687)
                     /locus_tag="OQQ76_003301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009453440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969680.1"
                     /translation="MNNRTITVSPEQLRRQAQEMLRCAEQMEKTSVAKDTLRKQLTPA
                     LRDLLQAKHRTQKAVDELVDCVAELEGQVSQFETLVKEFTA"
     gene            complement(684..2085)
                     /locus_tag="OQQ76_003302"
                     /pseudo
     CDS             complement(684..2085)
                     /locus_tag="OQQ76_003302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000203847.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
     gene            complement(2082..2960)
                     /locus_tag="OQQ76_003303"
     CDS             complement(2082..2960)
                     /locus_tag="OQQ76_003303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HCS1969681.1"
                     /translation="MMTIDQREKQTRLQARMDELRAEIAFAQKGEKPWPYRSCLMREG
                     RGYCEKHGKYRTHILVWSDRNGEDREKISCCPDCLIAEASYLTMELSSLKAEELTDNA
                     GIALRFRDCEFDNYLEVNPDAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHL
                     AVSMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADDVIEHYASLDLLIVDEV
                     GVQFGSAAEMAILQEIINARYEGILPTILISNLSPEELWAFISPRIADRITDGGRNWL
                     SFNWPSYRSRIGGVAA"
     gene            complement(2971..3963)
                     /locus_tag="OQQ76_003304"
     CDS             complement(2971..3963)
                     /locus_tag="OQQ76_003304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HCS1969682.1"
                     /translation="MSRYAPTPEVMAIGQINISGNVTPANWWKYIRLPSGRPDATAIA
                     LLSEIVYWYRPTEVRDEHTGALLGYRKRFQGDKLQRSYQAFAEQFGFGKRETADALKR
                     LRDAGFITLDLRTVEMLDGVKCSNILFVGINPQAIAAITTPSSVSPESNSNNAISDTA
                     ITLKRNTPRRHNGTGDTPNVDTNTEITTEITTETKNTIDASADASAPARSARQEYSPE
                     FEQAWQEYPKRAGGNSKSAAFKAWKARIREGIKPETMLDGVKRYAAWVRATGNTGTQF
                     VKQAATFFGPDRHFEDYWQQPAAHGGGRQRQVDVLAGLGAMSDKFGKSSNKLTF"
     gene            complement(3960..4259)
                     /locus_tag="OQQ76_003305"
     CDS             complement(3960..4259)
                     /locus_tag="OQQ76_003305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000995578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCS1969683.1"
                     /translation="MNCFQFVCGCAFDNPIQRLIMLRVLMSGSSDGEGERVIDHQVLA
                     DFCCCSKQAIFRETLALERAGYLHIRKIATLTIDAKARLQPARGYTILMPRKEVV"
     gene            complement(4256..4480)
                     /locus_tag="OQQ76_003306"
     CDS             complement(4256..4480)
                     /locus_tag="OQQ76_003306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000621226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969684.1"
                     /translation="MIRHIVNSLYHRYNRCPRVGQWFATSNGHVLRVCLVNAESQKVV
                     CELQGRSYTISYPLAVFLSGKMFKRLGGVA"
     gene            complement(4477..4671)
                     /locus_tag="OQQ76_003307"
     CDS             complement(4477..4671)
                     /locus_tag="OQQ76_003307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969685.1"
                     /translation="MISYEIIISTTEYRNDVSVRTDVSVWHRRYKSRKTAELKAAEMC
                     ETISMKGSPVKYVTTVEVRP"
     gene            complement(4668..5516)
                     /locus_tag="OQQ76_003308"
     CDS             complement(4668..5516)
                     /locus_tag="OQQ76_003308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000587265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS1969686.1"
                     /translation="MIISRPNIDSAISGRYTVSAPYKAGAGIGVLKFAHAHNRASAVF
                     LRTFPHIQIMVGRAGASKDAPGSCATGYANPVRLTTSVIGVPCGEFSKFAHEDVTMAT
                     TPTQTHPKIDVIHGKAVTSSLAVAEYFCKQHKNVIQKIQTLECSVEFTELNFQPSDYT
                     DCTGRKLPCYQITRDGFAFLAMGFTGKRAARFKEAYINAFNQMEKNLSGADAVDMSAV
                     ARNARGVYLHLREIHQIWTSQLYPMLKAVESPLASKLYDRVGDAVFGAALVDSRLNGS
                     DKEVRP"
     gene            complement(5625..6332)
                     /locus_tag="OQQ76_003309"
     CDS             complement(5625..6332)
                     /locus_tag="OQQ76_003309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001435006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HCS1969687.1"
                     /translation="MNTAIFNGKASMTSVEIAELVGSRPDSVKRTIETLAKKGIIQFP
                     QTVEIENKQSLGPRRFSSAYVFEGERGKRDSIIVVAQLCPEFTARLVDRWRELEEQIR
                     KPMSEIEMVAAMALEAVRQQKRITQVEEKVSHVAETVEQIKKGTIREGYAGYRQLKAK
                     TGLSDDKCRNLVNAYQIPTDTHEFMTPDRLLSRRAIVAVEPFMAAFYRVMEEAEPRGT
                     RWYHPKMGLFQVIGWQR"
     gene            6668..7324
                     /locus_tag="OQQ76_003310"
     CDS             6668..7324
                     /locus_tag="OQQ76_003310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015967619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1969688.1"
                     /translation="MKSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLTKSF
                     NGDTLFKVAAALRCSPQWLQNGDEKDKHWENNVKSCPQRDTAHSYPVINWVQAGLFAT
                     SGDDYNMYDQDNWRHSVKYAGERGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFS
                     GCYVIARKKSTNEATFKKYISDMGKAFLKPLNPQYPIIEMDNDCEIVGVVVDARWDIF
                     "
     gene            7427..7930
                     /locus_tag="OQQ76_003311"
     CDS             7427..7930
                     /locus_tag="OQQ76_003311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1969689.1"
                     /translation="MINKATTLDCLEELKNLGSLITLIAKATPDATLSSDIESCAGLA
                     WDMTNSISRKLSSAMLLQNKNSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWES
                     GEYEPTISMLIPLANILGCDPMWLLTGEVTPPEQPKSEEQQHHDASQQVCPLSREALL
                     RKNQYQW"
     gene            8218..8424
                     /locus_tag="OQQ76_003312"
     CDS             8218..8424
                     /locus_tag="OQQ76_003312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000141088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969690.1"
                     /translation="MTETTSQQDNYEGICLEPDSFAVNVYHLLHATQVLHMSSNHETK
                     TLGSEILSFACEYTKAAAEKELAQ"
BASE COUNT         2169 a         2227 c         1991 g         2151 t
ORIGIN      
        1 tcacggagaa gattgtcaca gtgccagcac agacggattg cgcctggcgc gtgccgcatt
       61 gtggtcatgt tctcgctgtg ccagtcggaa tgaggccact gacagccctt ttcacgaagt
      121 aaccagctct caaggcattc cacgccacca gcacgacgga tcaccgcctc atggcggaac
      181 acggcccgaa cggcaggatc atccgccagc ggttgtgatg ctgccggaac ggcaccgctg
      241 gcgaaagatg aataacgttc cggctcaggc tccagcagga cacgcccctg cataaacagg
      301 ggcatcagct ctgaaccggg cctgaacaat acaatcccca ttcgcggggc aatttcagga
      361 gtcaacaatg ctctcacggt cacctcagcg aacgatattg catgaacgca ggagaaaaaa
      421 attcagccat cacgcagtaa actccttcac cagcgtttca aactggctta cctggccttc
      481 cagttccgcc acgcaatcca ccagctcatc caccgccttt tgtgtacggt gttttgcctg
      541 cagcagatca cgaagcgccg gagtaagctg cttgcggagc gtatcttttg ccacgctcgt
      601 tttttccatc tgttcagcac aacgaagcat ctcctgcgcc tgccgacgaa gttgttccgg
      661 tgaaacagtg attgttctgt tgttcaaaat aaacgctccg ttttactgcc cgacatgcgg
      721 ttattgctgt atctgcgcgg attgcccggc gtcatgggtg tggaaagaac ccgggcactc
      781 tcctggtcca caggcagaaa atgtccgtta tgaaaacgcc ggtaaatggt cccgagcgtg
      841 ccattacgct gtttcgtgat gttgatttct gctatgcctc tggcctgagt ttccgggttg
      901 tatacctcat ccctgtaaag catcagaatg atgtcggcat ccgcctcgat ttccccggag
      961 tttttcaggt ccgagttcat tgggcgttta ttgggtctgg attccacgcc gcgggagagc
     1021 tggctcagag caatcagcgg aaaaccgccg gattttgcca ggcttttaag tccctttgag
     1081 atttccccca ccgcaaggtc gtgacgcccc gtactgcggg ttttaatcag gccgaggtaa
     1141 tcgaccacca ccagcgccgt ttccgggtgt ttcatccggt ggtgcttcgt ggttgcacat
     1201 atctcatcaa tgggtcaggt ttgcctggtc caccatccag atattacgcc ccgtcattcg
     1261 tcccacgccc tgcgagaaac gcgcccagtc ttcatcttca aaacgggcaa cagacttaag
     1321 acgggatacc ggcattccac cggcagcaga caccatacgt tcaccaatct ggatgttcgc
     1381 catctccatg gtgaacagaa gcacgccatg cccctgctca gtcaccttgt cgatgatgtc
     1441 cagcgcaagt tcggttttcc ccatcgaagg acgggcggca atgaatacca ggtctccggg
     1501 ctccataccg cccgtttttg cgtccagttc atcaataccg gtcatcagcg ccctggattt
     1561 ctccagtccc tgattgcggc attcaacacg gtcgaccact tccagaagga catcatcaat
     1621 gtgaaccggc tgaatgacgc cctttccggt cgacagtgag gccatcatgt tctgcacatc
     1681 cttcagggca tcctcggctg cttcacaggt atacgcatca cgtaaattct gtaatgcttc
     1741 agtcagtgtt ttttctgcat cgcgcagtgc ggcattgcgc cgcaacgctg cgacatagtg
     1801 ctccagtgaa gacttcaccc aggttttgcg tccggtgtcg gtaatcaccg gggcaagttc
     1861 cggcatctca ttgcacagca gtacggggtc aatgacgccg gatatgcgag cctgtctgca
     1921 aatccccgcg taaatatccc ggtactgacg cacaaaaaat acatccgccg gaagtgtggc
     1981 cagaatatcc atcacttccg gatcggcccc acgcagaaaa aacgcaccga tgacagcgcc
     2041 ttccaggtca tcgttacgcc atgccggggt gttctggctg gtcatgcggc aacacctccg
     2101 atacgagaac ggtagctggg ccagttaaac gacaaccagt tgcgcccgcc atcggtgatc
     2161 ctgtcggcaa tccggggact gatgaacgcc cacaattctt ccggtgaaag attgctgatc
     2221 aagatagttg gcaaaatacc ctcataccgg gcattgataa tttcctgcaa aatggccatt
     2281 tcagccgcac tgccaaactg aacgccgact tcgtcgacaa tcagcaaatc cagtgacgca
     2341 taatgctcaa tgacgtcatc cgctgttttt tcactgtcat tccgccagca gtttttcaca
     2401 gcccgggtaa ggcgcatcac gtcggtgatc tccacactgg ccagatagtt acggatgatg
     2461 tgttttgcca ttgataccgc cagatgattt ttcccggtac cgcaactgcc ggtcataaca
     2521 agactggtac cgttctccag catatctggc cagttctccg catagcggcg acaggccgca
     2581 agatttctgg ctgcgtcagg attaacctcc agataattat caaactcgca gtcccgaaaa
     2641 cgcagagcaa ttccggcgtt atcagtcagt tcttccgcct tgagggacga cagttccatg
     2701 gtcaaataac tggcctcagc gatcaagcag tcagggcagc atgaaatttt ttctctgtcc
     2761 tcgccattac gatcgctcca caccagtata tgcgtacgat atttaccgtg tttttcgcaa
     2821 tatccgcgac cttcacgcat caggcaggaa cgataaggcc atggcttttc gcccttctga
     2881 gcaaatgcaa tctctgcccg taactcatcc attcgcgcct gtagtcttgt ttgtttctca
     2941 cgttggtcaa tcgtcatcat cgctgtcacc tcagaatgtc aatttgttac tggatttacc
     3001 gaatttgtca gacatggctc ccaggccagc caggacatca acctgtcgct gtcgcccacc
     3061 tccgtgagcg gctggctgtt gccagtaatc ttcgaagtga cgatcgggtc caaagaacgt
     3121 cgcagcctgc ttcacgaact gtgtgccggt atttcctgta gcacgtaccc aggcggcata
     3181 ccgcttcacg ccatcaagca tggtctccgg ttttattcct tccctgatac gggctttcca
     3241 ggctttgaag gctgctgact tggaattgcc accagcacgt ttgggatatt cctgccaggc
     3301 ctgttcaaat tccggtgaat attcctgtcg ggcagaacgc gctggcgcag acgcgtcagc
     3361 ggatgcatca atagtgtttt tagtctccgt tgtaatctct gtagtaatct ctgtatttgt
     3421 atcaacattc ggcgtatccc ctgttccgtt atgacgtcgg ggggtgttcc gttttaacgt
     3481 aatagctgta tcgctgattg cattattgct gttactttct ggcgaaacag aagaaggtgt
     3541 ggtgatggcc gcaattgcct gtgggttgat cccgacaaac aaaatattgc tgcatttcac
     3601 cccatcgagc atttccaccg tgcgtaaatc cagagtaata aaccctgcat cgcgcagacg
     3661 cttcagcgca tctgcggttt cccttttccc gaaaccaaac tgctcagcaa acgcctggta
     3721 gcttctttgc agtttgtcgc cctgaaaacg cttgcgatat cccagcaacg ctccggtgtg
     3781 ctcatccctg acctctgtcg ggcggtacca gtaaacgatc tctgaaagca gagcgatagc
     3841 cgtcgcatcc ggacgcccac tgggtagtcg aatatatttc caccagttcg caggtgtaac
     3901 attgccggaa atattaattt gaccaatagc cataacttcc ggtgtggggg cgtaacggct
     3961 catacaacct ccttccgcgg catgagaatt gtgtagccac gcgcaggttg tagtctggct
     4021 tttgcatcaa tagtaagcgt tgcaattttt cggatatgaa gataaccagc tctttccagt
     4081 gccagggttt ccctgaatat cgcttgctta gaacaacagc agaaatcagc aagcacctga
     4141 tgatcaataa ctctctcgcc ttcaccgtct gaagaacccg acatcaaaac acgcaacata
     4201 atcaggcgct gaatcgggtt atcgaaagca catccgcaca caaactgaaa acagttcacg
     4261 ccacacctcc cagacgctta aacatttttc cagacagaaa taccgccaga gggtaactga
     4321 tggtgtagct acgcccctgt agttcgcaca cgactttctg gctttcagcg ttgactaggc
     4381 aaacccgcag aacgtgaccg ttgctggtgg cgaaccactg ccccacacgg gggcaacggt
     4441 tgtatcggtg atacagggaa ttaacgatgt ggcggatcat ggacgcacct ccaccgtagt
     4501 tacgtattta accgggctac ctttcattga gatggtttca cacatctctg ccgctttcag
     4561 ttccgctgtt tttctggatt tatagcgacg gtgccagaca gatacatccg tgcgaactga
     4621 tacatcgttt ctgtattccg tagtggagat gatgatttcg taactaatca tgggcgaacc
     4681 tccttgtcag aaccattcag cctggaatca acaagtgcag cgccaaaaac agcatcacca
     4741 acacggtcgt acagtttgct agccagcgga gattcaacgg ccttaagcat tggataaagc
     4801 tggcttgtcc agatttgatg gatttcacgc aaatgcaggt atacgcctct ggcgtttcgt
     4861 gcgacagctg acatatcaac cgcgtcagca ccagataaat tcttctccat ctggttaaag
     4921 gcgttgatgt atgcctcttt gaaccgggct gcacgtttgc cagtaaagcc catagcaagg
     4981 aacgcgaagc catcgcgggt gatttgatag caaggtagtt tgcggcctgt gcaatcggtg
     5041 taatcactgg gctgaaaatt cagctcagtg aattcaacag agcactcaag cgtctggatt
     5101 ttttgaataa cgtttttgtg ctgcttgcag aaatattcgg caacggccaa agaagaggta
     5161 acagccttcc catggataac atcaatttta gggtgagttt gggtaggggt ggttgccata
     5221 gtgacatcct catgtgcgaa ttttgaaaac tcaccacatg ggacgccaat cacagaggtg
     5281 gtgagacgta cagggttggc gtaaccggtc gcacatgacc ccggcgcatc tttcgatgcc
     5341 cctgcacgcc ccaccataat ttggatgtga ggaaacgtgc gcaaaaaaac cgctgaagcg
     5401 cggttatgcg catgtgcgaa tttcaggacg ccaatcccgg cacccgcttt ataaggtgcg
     5461 gagacagtgt aacgtcccga aattgcagaa tcaatatttg gtcttgaaat gatcatatag
     5521 ctgctgatat ctttagaact gttcttggat gtttcggagc cgttttatgc gaaacagctc
     5581 cccgttattg atgttgagtg agccgggtta ctcccggctt tttttcaccg ctgccaacca
     5641 ataacctgaa ataaccccat tttcgggtga taccagcgag tccctcgcgg ttctgcttcc
     5701 tccataaccc gataaaaagc agccataaac ggttccacag caacaattgc gcgacgtgac
     5761 aacaatctgt ccggcgtcat gaactcatgg gtgtctgtag gaatttgata ggcgttcacc
     5821 agattgcggc atttatcatc tgacaaaccg gtttttgctt tcagttggcg atatccggca
     5881 tagccctcac gaatagtgcc ctttttaatt tgctcgactg tttcagcaac gtggctgact
     5941 ttttcttcca cctgagtgat ccgtttctgt tggcgaacgg cttcaagagc catcgcggca
     6001 accatttcga tttcgctcat tggcttacgg atctgttctt ccagttcgcg ccagcgatct
     6061 accaggcgag ctgtgaattc aggacagagc tgtgcgacga caatgatgct gtcgcgctta
     6121 cctcgttcac cttcgaatac atacgcgcta gaaaatcggc gaggcccaag tgattgttta
     6181 ttctcaattt ccacagtctg tggaaattgg atgattccct ttttagccag tgtttcaata
     6241 gttctcttaa cactatctgg tcggcttccc accagctctg cgatctcaac gctggtcatg
     6301 gatgctttgc cgttaaaaat tgcggtgttc attgttggtc tcctgtgggc ttgtcatctt
     6361 ctgtattcgc tagccttggg tgtgtatatg gaatgctcgg atccagatga caaagaatgg
     6421 caacatcctc cggaacacct cgcgttttcc actttccaac accttgactg ccacgaggcc
     6481 ttcctttctt tgggaacctg cgaccaatag cggcattggt tttaaattga atttttaata
     6541 tttcataaag ggtcattctt tagtctcaca ccagatactt tgttattcaa cgatgttaac
     6601 cgcgggattc caaagtatca agaaattctg ttactttcgt atcaacagcc atgagaggag
     6661 aagaaaaatg aagtctttag gtgaacgtct catcaacgca cggcaaaaag ctgggttaac
     6721 acaagatgcg ttggctaaaa aagctgggat caccagagtt gcaatcagta aagccgagca
     6781 aggccttaca aaaagtttca acggtgacac cctttttaaa gttgcagctg cactgcggtg
     6841 ttcaccgcag tggcttcaga acggagatga aaaagataag cattgggaaa ataatgttaa
     6901 gagctgccca cagagagaca cagcacactc ttaccctgta attaactggg ttcaggcagg
     6961 attattcgca acttctggtg atgactacaa catgtatgat caggataatt ggaggcattc
     7021 tgtaaaatac gctggtgaga gggggttctg gctggaagtg cacggagact caatgacttc
     7081 gcccgtagga ataacatttc ctgaaggaat gtcgatcctt gtcaacccag ataaagaagt
     7141 tttttcaggg tgttacgtca tcgccagaaa aaaatccacc aatgaagcaa cattcaaaaa
     7201 atatatttct gacatgggaa aggcgtttct aaagcccctt aatccacaat atccaatcat
     7261 agaaatggac aatgattgcg aaatagtagg tgttgtggtt gatgccaggt gggatatttt
     7321 ctgaccagac acaaaacaca aaaagaaacc aaagtatcaa aatcacttgc cacaccttga
     7381 cgccttagtt accataaaac aaagttcgta actgaggtat catctcatga tcaataaagc
     7441 tacaactctt gactgtctcg aagaactgaa aaacctcggc agcctcatta cactaatagc
     7501 aaaagcaaca cctgatgcta cactctctag cgatatagag tcatgcgcag gactggcatg
     7561 ggatatgaca aatagcatat ccagaaagct atcgtcagca atgcttttac agaacaaaaa
     7621 ttctgcaatc aacaaccgtc ttcgcaccca acgcgaagcc tgcggcttaa caaccgccga
     7681 actcgccagg ctgctcgatc tcgatgaaga aattatcatc cagtgggaga gcggagagta
     7741 tgaaccaact atcagtatgc ttatcccact ggcaaatatt cttggctgcg atccgatgtg
     7801 gctgttaact ggtgaggtta ctcctccgga gcaaccaaaa agtgaggagc agcaacacca
     7861 tgacgcatct caacaagttt gccccttatc tcgcgaagct cttctgcgga agaaccaata
     7921 ccaatggtga cataatcgcc gcttcgccct tcaaggtaca tgcgaacatt tttatcaatc
     7981 attgcggaaa cagtctcaat atgaaaacac ttctgagact cgctatatag cagaacatat
     8041 aagtcagctg aggaagccat gaaaaagttc gaaaacataa ctgttctcca tgttgatgac
     8101 tttgattata caaacccgga acttctcccg gaggttgtaa aggcaataga tgttgccgat
     8161 atagtgatta gagaaaagag aattgtcaaa aacaggctcg catgcacttc aggagcaatg
     8221 acagaaacaa cctcacagca agataattac gaaggcattt gtctggagcc tgattcattt
     8281 gcggtaaatg tttatcattt attgcatgca acacaggtat tacatatgtc cagtaatcac
     8341 gaaacgaaaa cactcggcag cgaaattctg agttttgcat gtgagtatac aaaagctgct
     8401 gccgaaaaag aattagcgca ataacaacaa atatgccctg aacgtttatt gcggttttat
     8461 cgccggggat tgttacaacc ttaatccgca ggaggcttta ttgtgacttt tataaagaat
     8521 atggcatcac acaagacc
//
LOCUS       DAJVUN010000169         8508 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.169, whole genome shotgun sequence.
ACCESSION   DAJVUN010000169 DAJVUN010000000
VERSION     DAJVUN010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8508
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.169"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..259
                     /gene="csgC"
                     /locus_tag="OQQ76_003313"
     CDS             <1..259
                     /gene="csgC"
                     /locus_tag="OQQ76_003313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706954.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HCS1969691.1"
                     /translation="TIIPEVTLTQSCLCRVQILSLREGGSGQSQTKQEKTLSLPANQP
                     IALTKLSLNISPEDRVKIVVTVSDGQALHLSQQWPPSSEKS"
     gene            380..691
                     /locus_tag="OQQ76_003314"
     CDS             380..691
                     /locus_tag="OQQ76_003314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1969692.1"
                     /translation="MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDV
                     STQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEY
                     N"
     gene            787..1320
                     /gene="ymdB"
                     /locus_tag="OQQ76_003315"
     CDS             787..1320
                     /gene="ymdB"
                     /locus_tag="OQQ76_003315"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HCS1969693.1"
                     /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP
                     ALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYL
                     NSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD
                     EENAHLYERLLTQQGDE"
     gene            1262..2743
                     /gene="clsC"
                     /locus_tag="OQQ76_003316"
     CDS             1262..2743
                     /gene="clsC"
                     /locus_tag="OQQ76_003316"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsC"
                     /protein_id="HCS1969694.1"
                     /translation="MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPL
                     EKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDN
                     NTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
                     TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDV
                     PEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVDGTLPLIWAKTRLLSDDPAK
                     GEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTN
                     SLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKT
                     FSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDR
                     WGRINWVDRHAKKEMILKKEPATSFWKRVMVRLASILPVEWLL"
     gene            complement(2751..3908)
                     /gene="mdoC"
                     /locus_tag="OQQ76_003317"
     CDS             complement(2751..3908)
                     /gene="mdoC"
                     /locus_tag="OQQ76_003317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706958.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoC"
                     /protein_id="HCS1969695.1"
                     /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEP
                     SLWLTLFNDFIHSFRMLVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL
                     TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI
                     RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL
                     FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES
                     VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI
                     TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR"
     gene            4302..5837
                     /gene="mdoG"
                     /locus_tag="OQQ76_003318"
     CDS             4302..5837
                     /gene="mdoG"
                     /locus_tag="OQQ76_003318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoG"
                     /protein_id="HCS1969696.1"
                     /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPK
                     SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA
                     VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI
                     GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY
                     KFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNG
                     LSIHAGNGEWIWRPLNNPKHLAVSSFSMENSQGFGLLQRGRDFSRFEDLDDRYDLRPS
                     AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED
                     KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS
                     IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP
                     ANE"
     gene            5830..8373
                     /gene="mdoH"
                     /locus_tag="OQQ76_003319"
     CDS             5830..8373
                     /gene="mdoH"
                     /locus_tag="OQQ76_003319"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HCS1969697.1"
                     /translation="MNKTTEYIDAMPIAASEKAALPKSDIRAVHQALDAEHRTWARED
                     DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF
                     WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL
                     PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ
                     LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK
                     HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR
                     WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA
                     TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF
                     VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP
                     VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL
                     AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF
                     HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF
                     WLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVDTDRFLEMNRQ
                     RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR
                     LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ"
BASE COUNT         2149 a         2015 c         2218 g         2126 t
ORIGIN      
        1 taccattatt cctgaagtca ctcttactca atcttgtctg tgcagagtac aaatattgtc
       61 cctgcgcgaa ggcggttcag ggcaaagtca gacgaagcaa gaaaagaccc tctcattgcc
      121 tgctaatcaa cctattgctt tgacgaagtt gagtttaaat atttccccgg aagatcgggt
      181 gaaaatagtt gttactgttt ctgatggaca ggcacttcat ttatcacaac aatggccgcc
      241 ctcttcagaa aagtcttaat ttgttgaaat gtcgagcata agatgaatct ggagagaatg
      301 gtctgctgcg aatcagccaa cctgaaagta tggataacac aaccctcaag gatgactaat
      361 cattgaggaa atagaataaa tgttcagacc ttttttaaac tctcttatgc tcggcagttt
      421 gttttttcct tttattgcca tcgcaggaag caccgcgcaa gggggcgtga tccattttta
      481 tggccaaatt gtggaaccgg catgtgacgt cagcacccag tcatcacccg tagaaatgaa
      541 ctgcccacag aatggttctg ttccgggaaa aacctattcc agcaaagcgt taatgagcgg
      601 caatgtcaaa aacgcgcaag tagcctcagt aaaagtgcag tatattgata aacagaaaaa
      661 gctggctgta atgaacatcg aatataacta agtttctgaa caacgcacgt tgctgagtag
      721 aaaaatgcga tttaaccaaa aaacctgctg tacacttaag aaacaagaag gtgttaagga
      781 ggcgttatga aaacgcgtat tcatgttgtg cagggtgata ttaccaaact ggccgttgat
      841 gtgattgtga atgcggctaa tccgtcatta atgggaggcg gcggcgtcga tggggccatt
      901 catcgcgcag cgggtccggc cctgctggat gcctgtttaa aagtcaggca acagcagggc
      961 gattgcccta cggggcatgc cgttattacg cttgcaggcg atcttcccgc taaagccgta
     1021 gtacacaccg tcgggccagt ctggcgtggt ggtgaacaaa acgaagacca gcttttgcag
     1081 gatgcctatc tcaatagtct gcgactggtg gcggcaaaca gctatacgtc agtggcattt
     1141 cctgcaatca gtactggggt ttatggttac cctcgtgcgg cagcggctga aatcgcagta
     1201 aaaaccgttt cagaatttat tacccgtcac gctttacccg aacaggtata ctttgtctgt
     1261 tatgatgaag aaaacgccca cctctacgaa agactcctta cccaacaagg agatgaatga
     1321 tttgccccgg ctggcgagcg cggtgctgcc actgtgttcg caacatcccg gtcagtgtgg
     1381 tcttttccct ctggagaaaa gtctggatgc gtttgccgcc cggtatcgtc tggccgaaat
     1441 ggcagagcat acgctggatg ttcagtatta catctggcag gacgatatgt cgggtcggtt
     1501 actgttttcc gccctgttag ccgcagcaaa gcgtggcgtt cgcgtccgtt tgttgctgga
     1561 cgacaacaat acgcccggac ttgacgatat tttacgcttg cttgacagcc atccccgcat
     1621 tgaagtccgg ctttttaatc ctttctcgtt tcgcttgctg cgtccgcttg gttatatcac
     1681 tgacttttcc cgtctcaatc gccgtatgca caataaaagt ttcactgtcg atggcgtggt
     1741 taccttggtg ggaggacgaa atattggtga tgcctatttt ggggcagggg aagagccact
     1801 tttttcggat ttagatgtta tggcaatagg acccgtggta gaggacgttg ccgatgattt
     1861 cgcccgctac tggtattgca aatcggtttc acccttacag caggtgctgg atgtcccgga
     1921 aggtgaaatg gcggatcgca tcgagttacc cgcctcctgg cataacgatg ccatgacgca
     1981 tcgttactta cgccaaatgg aatccagtcc gtttataaat catctggttg atggaacgtt
     2041 gccgcttatc tgggcgaaaa cacgtttatt aagtgatgat ccggcgaaag gggagggcaa
     2101 ggcaaaacgg cattcactgt taccgcagcg cctgttcgat atcatgggct cacccagtga
     2161 acgcatcgat attatctctt cctattttgt accgacacgc gcaggtgtgg cgcaactctt
     2221 acggatggtg agaaaagggg taaagattgc gatcctaacc aattctcttg ccgctaacga
     2281 tgttgctgtc gtccatgccg gatacgcgcg ctggcgcaaa aaattgctcc gctatggcgt
     2341 ggaattatat gaactcaagc cgacgcgtga acaaagtagt acgttacacg atcgcggcat
     2401 aaccggtaat tccggtgcca gcctgcatgc taaaaccttt agcatcgatg gtaaaacggt
     2461 gtttatcggc tctttcaatt tcgatccacg ttcgacattg ctcaatactg aaatgggctt
     2521 cgtgatagag agcgaaacgc tggcacagtt aattgataaa cgctttatac agagccagta
     2581 tgatgcggcc tggcagctcc gtctggacag gtggggacgg atcaactggg ttgatcgtca
     2641 tgcaaagaaa gagatgattc tcaaaaaaga acccgccacc agtttctgga agcgggttat
     2701 ggtcagactg gcgtcgatat tgcccgtgga atggttattg taaatgtggc ttaacgggct
     2761 ggtgctttat cgttctcacg cttaacaacc ggtttaccag aaaacaaaaa cttcagtaac
     2821 gggatgcgta aatgaatttc atacagaatt atcgcaatcc ctactacgaa tatcaggcca
     2881 cagagaaaac caagccagtt ggaggtgatg tgcggtgtaa tgtatgcgcc gaaaaacagc
     2941 gttaacgggt ggtgaaccag atagataaat agcgatgcgt taacaaagta agtcacccgc
     3001 gctgactgga agttaagcaa acggtggcca aaggagaaga ccacattcac catccacaga
     3061 ccgaggacca tggtgatcac cgactcggtt tcgtacatcc aggcatcgcc actgccatag
     3121 cgttggttga gtaaataagc gacaaatgcc aatgctgctg caagggtaca gccacgagac
     3181 ggcgtggtaa acaaggcttt aagatgaggg aaaatgaaag ccagtgcacc gaggataaag
     3241 aacggcaaat aaaatagcgt ttgcatgaca ataaaattga acatgccatt actcagaatg
     3301 ggcggataca caataaaaat cgttcttctt attaccgcat agccgatgcc gaggcataaa
     3361 aaaatcaccg atagttttac catcgagaat tttttattcg ttttatcaga attttctaaa
     3421 ttatttctga tgcgtttaaa tatccatacg cacagcgtcg tcatgactac taacaccagt
     3481 aaaaaccaca ggtgtgatat taattcccag gccaacgtat tatatttgtc atacaatgac
     3541 agcccaggcc aactttccgc tttccctttg acgtattgca gcataataaa ttgcggcaat
     3601 gtcagtaagg ggatggctgt taacatcggg atacctacac gttcgacacg tactttccac
     3661 cattttttca agggatagcg taaaaaaagc atgtaggaaa agtagccgga tataacgaaa
     3721 aataccagca tgcggaacga gtggatgaag tcattaaaaa gggtcagcca caatgacggt
     3781 tcggcgctat tcacatgcca tgtatggctc gaatagatta aagaaatatg aaaagggatc
     3841 cctaacaaca tcagccaggc gcggatggag tcgaggaaat attcacgttg cgcgggtact
     3901 ggattcatat atggttaact aatctcggat ttttcgtctt atccctgtcg ggttatgcct
     3961 ttaggcttgt tgccatagcg acaccgacct gaccgcgcca ggcgcaggct tcaaggtttt
     4021 tatgcatagc atcatcgcta ccactaacca gaatggaagc gtctgtaaga cggttgataa
     4081 ataaaattgc tggcaaaccc tacacgaagt cgatgcttct gtctttagga gaagcacgga
     4141 aagtgaaaac ggttgcaatc aggtgcttaa tccatgagcc agcgtgctga acgataccgg
     4201 gattctgttg tcggaatggc tggttatcca ttaaaataga tcggatcgat ataagcacac
     4261 aaagggggaa gtgcttacta attatgaaac ataaactaca aatgatgaaa atgcgttggt
     4321 tgagtgctgc agtaatgtta accctgtata catcttcaag ctgggctttc agtattgatg
     4381 atgtcgcaaa gcaagctcaa tccttagccg ggaaaggcta tgaggcgccc aaaagcaact
     4441 tgccctccgt tttccgcgat atgaaatacg cggactatca gcagatccag tttaatcatg
     4501 acaaagcgta ctggaacaat ctgaagaccc cattcaaact cgagttctac catcagggta
     4561 tgtacttcga taccccggtc aaaataaatg aagtgactgc caccgcagtc aaacgaatca
     4621 aatacagccc ggattatttc actttcggcg atgttcagca tgacaaagac acggtaaaag
     4681 accttggttt tgccggtttt aaagtgcttt acccgatcaa cagcaaagat aaaaacgatg
     4741 aaatcgtcag catgctcggg gccagctatt tccgcgtgat tggtgcaggt caggtttatg
     4801 gcctttctgc ccgtggcctg gcaattgata ccgccttgcc atcgggtgaa gaatttccac
     4861 gcttcaaaga gttctggatc gagcgtccaa aaccgactga taaacgttta accatttatg
     4921 cattgcttga ctcgccgcgc gcgacaggtg cttacaaatt cgtggttatg ccagggcgtg
     4981 acacggttgt ggatgtgcag tcgaaaatct atctgcgcga taaagtcggc aaactggggg
     5041 ttgcaccgtt aaccagtatg ttcctgtttg ggccgaacca accgtcgcct gcaaataact
     5101 atcgtccgga gttgcacgac tctaacggtc tctctatcca tgccggtaat ggcgaatgga
     5161 tctggcgtcc gttgaataac ccgaaacatt tagcggttag cagcttctcg atggagaact
     5221 cgcaaggctt cggtctgttg cagcgcggtc gtgatttctc ccgctttgaa gatctcgatg
     5281 atcgttacga tcttcgtcca agcgcatggg tgactccgaa aggggagtgg ggtaaaggca
     5341 gcgttgagct ggtggaaatt ccaaccaacg atgaaaccaa cgataacatc gtcgcttact
     5401 ggacgccgga tcagctgccg gagccgggta aagagatgaa ctttaaatac accatcacct
     5461 tcagccgtga tgaagacaaa ctgcatgcgc cagataacgc atgggtgcaa caaacgcgtc
     5521 gttcaacggg ggatgtgaag cagtcgaacc tgattcgcca gcctgacggt actatcgcct
     5581 ttgtggtcga ttttaccggc gcagagatga aaaaactgcc agaggatacc ccggtcacag
     5641 cgcaaaccag cattggtgat aatggtgaga tagttgaaag cacggtgcgc tataacccgg
     5701 ttaccaaagg ctggcgtctg gtgatgcgtg tgaaagtgaa agatgccaag aaaaccactg
     5761 aaatgcgtgc tgcgctggtg aatgccgatc agacgttgag tgaaacctgg agctaccagt
     5821 tacctgccaa tgaataagac aactgagtac attgacgcaa tgcccatcgc cgcaagcgag
     5881 aaagcggcat tgccgaagag tgatatccgc gccgtacatc aggcgctgga tgccgaacac
     5941 cgcacctggg cgcgggagga tgattccccg caaggctcgg taaaggcgcg tctggaacaa
     6001 gcctggccag attcacttgc tgatggacag ttaattaaag acgacgaagg gcgcgatcag
     6061 ctgaaggcga tgccagaagc aaaacgctcc tcgatgtttc ccgacccgtg gcgtaccaac
     6121 ccggtaggcc gtttctggga tcgcctgcgt ggacgcgatg tcacgccgcg ctatctggct
     6181 cgtttgacca aagaagagca ggagagcgag caaaagtggc gtaccgtcgg taccatccgc
     6241 cgttacattc tgttgatcct gacgctcgcg caaactgtcg tcgcgacctg gtatatgaag
     6301 accattcttc cttatcaggg ttgggcgctg attaatccta tggatatggt tggtcaggat
     6361 ttgtgggttt cctttatgca gcttctgcct tatatgctgc aaaccggtat cctgatcctc
     6421 tttgcggtac tgttctgttg ggtgtccgcc ggattctgga cggcgttaat gggcttcctg
     6481 caactgctta ttggtcgcga taaatacagt atatctgcgt caacagttgg cgatgaacca
     6541 ttaaacccgg agcatcgcac ggcgttgatc atgcctatct gtaacgaaga cgtgaaccgt
     6601 gtttttgctg gcctgcgtgc aacgtgggaa tcagtaaaag ccaccgggaa tgccaaacac
     6661 tttgatgtct acattcttag tgacagttat aacccggata tctgcgtcgc agagcaaaaa
     6721 gcctggatgg agcttatcgc tgaagtcggt ggcgaaggtc agattttcta tcgccgccgc
     6781 cgtcgccgcg tgaagcgtaa aagcggtaat atcgatgact tctgccgtcg ctggggcagc
     6841 cagtacagct acatggtggt gctggatgct gactcggtaa tgaccggtga ttgtttgtgc
     6901 gggctggtgc gcctgatgga agccaacccg aacgccggga tcattcagtc gtcgccgaaa
     6961 gcgtccggta tggatacgct gtatgcgcgc tgtcagcagt tcgcgacccg cgtgtatggg
     7021 ccactattta cagccggttt gcacttctgg caacttggcg agtcgcacta ctggggacat
     7081 aacgcgatta tccgcgtgaa accgtttatc gagcactgcg cactggctcc gctgccgggc
     7141 gaaggttcct ttgccggttc aatcctgtca catgactttg tagaagcggc gttgatgcgc
     7201 cgtgcaggtt ggggggtctg gattgcttac gatctcccgg gttcttatga agaattaccg
     7261 cctaacttgc ttgatgagct aaaacgtgac cgccgctggt gccacggtaa cctgatgaac
     7321 ttccgtctgt tcctggtgaa gggtatgcac ccggttcacc gtgcggtgtt cctgacgggc
     7381 gtgatgtctt atctctccgc tccgctgtgg tttatgttcc tcgcgctctc tactgcattg
     7441 caggtagtac atgcgttgac cgaaccgcaa tacttcctgc aaccacggca gttgttcccg
     7501 gtgtggccgc agtggcgtcc tgagctggcg attgcacttt ttgcttcgac tatggtgctg
     7561 ttgttcctgc cgaagttatt gagcattttg cttatctggt gcaaaggaac gaaagaatac
     7621 ggcggcttct ggcgcgttac attatcgttg ctactggaag tgcttttttc cgtgctgctg
     7681 gctccggtac gcatgctgtt ccatacggtc ttcgttgtca gcgcgttcct tggctgggaa
     7741 gtggtgtgga attcaccgca gcgtgatgat gactccactt cctggggtga agcgttcaaa
     7801 cgccacggct cacagctgct gttagggtta gtgtgggctg ttgggatggc gtggctggat
     7861 ctgcgtttcc tgttctggct ggcaccgatt gtcttctcgt tgatcctgtc accgtttgtt
     7921 tcggtgattt ccagccgtgc caccgttggt ctgcgaacca aacgctggaa actgttcctg
     7981 atcccggaag agtattcacc gccgcaggtg ctggttgata ccgatcgctt ccttgagatg
     8041 aatcgtcaac gctcccttga tgatggtttt atgcacgcgg tgtttaaccc gtcatttaac
     8101 gctctggcaa ccgcaatggc gaccgcgcgt caccgcgcca gtaaggtgct ggaaatcgcc
     8161 cgtgaccgcc acgttgaaca ggcgcttaac gagacgccag agaagctgaa tcgcgatcgt
     8221 cgcctggtgc tgctaagcga tccggtgacg atggcccgtc tgcatttccg tgtctggaat
     8281 tccccggaga gatattcttc atgggtgagt tattacgaag ggataaagct caatccactg
     8341 gcattgcgta aaccggatgc ggcttcgcaa taaaaacgta gttgcctgat gcgctacgct
     8401 tatcaggccc acatcgttcc tgcaatttat tgattttgca gattttgtag gttgggtaag
     8461 gcgttcacgc cgcatccggc aaaaacaacg agccaataaa aataccgg
//
LOCUS       DAJVUN010000170         8506 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.170, whole genome shotgun sequence.
ACCESSION   DAJVUN010000170 DAJVUN010000000
VERSION     DAJVUN010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8506
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.170"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..541)
                     /locus_tag="OQQ76_003320"
     CDS             complement(<1..541)
                     /locus_tag="OQQ76_003320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1705 domain-containing protein"
                     /protein_id="HCS1969698.1"
                     /translation="MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDS
                     LHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDR
                     SMIANIIDTTPAESYALMTPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGAN
                     ILVSVLLILLVAALFYKDYA"
     gene            complement(645..1982)
                     /gene="adiC"
                     /locus_tag="OQQ76_003321"
     CDS             complement(645..1982)
                     /gene="adiC"
                     /locus_tag="OQQ76_003321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/agmatine antiporter"
                     /protein_id="HCS1969699.1"
                     /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY
                     GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
                     AMVVIGVGYLSYFFTILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
                     PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK
                     NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGA
                     IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM
                     TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT
                     IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD"
     gene            complement(2119..2880)
                     /gene="adiY"
                     /locus_tag="OQQ76_003322"
     CDS             complement(2119..2880)
                     /gene="adiY"
                     /locus_tag="OQQ76_003322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator AdiY"
                     /protein_id="HCS1969700.1"
                     /translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI
                     IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA
                     QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH
                     KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ
                     SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA"
     gene            complement(3205..5472)
                     /gene="adiA"
                     /locus_tag="OQQ76_003323"
     CDS             complement(3205..5472)
                     /gene="adiA"
                     /locus_tag="OQQ76_003323"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418541.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HCS1969701.1"
                     /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
                     FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD
                     RDLLELVDEFAWILEDTTDFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP
                     GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
                     GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR
                     NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ
                     DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPSDHNGPTVFATHSTHKLLNALS
                     QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
                     IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
                     YWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH
                     GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPD
                     TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEITPREAYNAIVDNNVELVSI
                     ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEG
                     TEIIDGIYHVMCVKA"
     gene            complement(5671..6579)
                     /gene="melR"
                     /locus_tag="OQQ76_003324"
     CDS             complement(5671..6579)
                     /gene="melR"
                     /locus_tag="OQQ76_003324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MelR"
                     /protein_id="HCS1969702.1"
                     /translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH
                     GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL
                     FLSWPLDKDLINHVTHGMMIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM
                     LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGLIAENYDQALTINDVAEHVK
                     LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS
                     TFGKYVGMSPQQYRKLSQQRRQTFPG"
     gene            6862..8217
                     /gene="melA"
                     /locus_tag="OQQ76_003325"
     CDS             6862..8217
                     /gene="melA"
                     /locus_tag="OQQ76_003325"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HCS1969703.1"
                     /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT
                     RLEESHIVVRKLMDSAGASGKITCHTQQKEALQDADFVVVAFQIGGYEPCTVTDFEVC
                     KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATLLNYVNPMAMNTWAM
                     YARYPHIKQVGLCHSVQGTAEELARDLNIDPSTLRYRCAGINHMAFYLELERKTADGS
                     YVNLYPELLAAYEAGQAPKPHIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
                     IKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA
                     IWTGEPSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN
                     INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLH
                     R"
     gene            8320..>8506
                     /locus_tag="OQQ76_003326"
     CDS             8320..>8506
                     /locus_tag="OQQ76_003326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969704.1"
                     /translation="MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
                     GTLFLVARIWDAINDPIM"
BASE COUNT         2178 a         2008 c         2203 g         2117 t
ORIGIN      
        1 aggcgtagtc tttataaaac agtgcggcga ccagcaaaat cagtagtaca gaaaccagaa
       61 tattggctcc acggaaaaga acactgcgca gacgcgaggt ggcaggtttg atttttatcc
      121 agcaggcaat cagcgcagca agcacgccgc tgaatcccag cgttaataac atttgcggtg
      181 tcatcagcgc ataactttct gccggagtgg tatcaataat attggcaatc atcgagcggt
      241 cgatgacgat gccgtaagtc attatgaaat attgtgcagc cgcgccaacc agaataaaca
      301 ggcaggccag tggtcgatta agccataaga aagagcttag tgtcaggaca atattaatca
      361 cgctgaaagc gacgaccggc atcgacaaga aaaccagtac gttatgcagc gaatccagcg
      421 gcagcgcctg caacacctgt ttaaaaaagg caatattcag gcagatagag atataaaaag
      481 cggccaacaa tagccaggcg agtaaattca aagagggtct ttttagtagg cgcttcaaca
      541 tcacggtgtt tccatcgaac aaagtgcgca tatgctcgca aagcaaaatt aagccaacct
      601 taagttctta aggttggctt ttatgtttgc tggattaagg ggaattaatc tttgcttatt
      661 ggtgcatcta agggatacgg gtttttatgt agccggttgt aattcagcgc atacatggcg
      721 gtgatgacca tcagggtgac aaatgaccac ataacctctt tcgctccgga ccccaccacg
      781 gcccagatgc agtagaggaa ggcaatggta gtaactgcca gatatgccgg gcgtgcttta
      841 ccaaagtgac cgtgtccgag cagcagtaac gccgcacagg tgtaaagata tggcaccagt
      901 gtaaagatga ccgagacgga agaaaccaga ccgaactctt tggtcgcgtt tggtgaaatg
      961 ctgctgagct ggaagatggt catcaaaata ccgacgataa tcagccccgc cactggcgta
     1021 cccgctttat ttacacgggc aaaaatcggt gggaacagtc cgtcatcggc agcggctttc
     1081 gccgtttgac ccgccagcaa cgtccagccg cccagtgaac ctaagcaacc cgcagctgcg
     1141 cagaaggaaa caatggcccc ggcggtgtca cccaacgcca tccgtgcggc atcaccgaat
     1201 ggcgaagcag aaacgcgcag tgcggcatta gggatcatcc ccataatcgc ggtggtagaa
     1261 agtacatagc aaacggcggc aatcaatacc ccaccaatgg tggcgatagg gacattgcgt
     1321 ttcgggtttt tcaccacacc tgcggcaacg gaggcacttt ccacaccgat gaacgaccac
     1381 agcgtaacgt taagggtact ttgaattgca ccgaaggtgc ccaggccgct gacgttccat
     1441 gccgccatat aggtttcacc acggaaccag aaccagccaa atacggcaat cccgacgatg
     1501 gggatcagcg ccagcacggt ggcaactgcc tgcacacggg tgatcatttt cggaccgaca
     1561 atgttcagca ggacgaagat ccacagcacc acgacgcagg tgatggttaa taccaatgga
     1621 tctttcagaa tcgtgaagaa gtaacttaaa tatcctacgc caatgaccac catggcgata
     1681 ttgccgatcc agcaggccag ccagtagagg acgttggttt gataaccgag aaacgggcca
     1741 aagcagcggc gggcgtaagc gtaagaacca ccaggacttg ggtcgaggaa cgacattttg
     1801 gcgtatacca tcgagagccc cagtgcaccg ataatcgtca ccaaccatcc ataaatggca
     1861 atcccgccag tggaggccag gtttgcaggt aacagaaaaa cacctgaccc cataatattc
     1921 cccgacacca tcagggtgac ggggattaag cccactttgt gagcatcagc atccgaagac
     1981 ataattaaac tcctgcgaag gcgagcttcg tgacaataaa ttacgtcata tcatacgcct
     2041 gcattcgata gttgaattat tatcgaccgg gttatcgctg atgccgttat taatatagct
     2101 cttcgttaag gttaaaaatc aggcgacagt gcgttctctg tgctgactaa cataatgcag
     2161 cggcgtcata ccgtagaagt ctttaaagac agaaataaag tacgacgtac tgttgtagcc
     2221 gcaggactgt gatacctgag agatattttt accgtccatc attaattcat ttacggcata
     2281 acgcatgcgg caggtggtga ttatttggct ataactggtg ttttcgcttt tcagcttttt
     2341 ctttaacaga cttgggctaa gacataaaca actggctacc atactaagat tccagtcttt
     2401 gtgaatatcg ctttcaataa tttgataaac gctgtcactt acacaattac gtaacatata
     2461 catcattaat gaaaggaatt ttttactgtc gagaaaacgg gatagcaccg tgaataataa
     2521 tgcgcgtgtt cgttcctttt ctgactcagt ttctgcgggc atcatgctgt gttgcgcggc
     2581 aacgcgaaag acgtctggcg tcaggcatgg cagggtgagt atgggcgtag cgctacgttg
     2641 ccatactggt atttgcgaga gatctttatt cagaaaccgg aggtaatctt tgatgatgtc
     2701 gtgactaata tgagcaacca aagtgttgtt aagagaggag acgtcgataa tattattttc
     2761 acaatttaat aacgccatat ggttagcttt aaggctaata ggttctttcc cattcaccct
     2821 tatccagaca tctttttcag tcaataaaac aatacaaggt tggtcgctgc aaatcctcat
     2881 acatgtactc ctgagtgcga ataaaagacc agttctcgct aaagcaaagc gataccggga
     2941 aatggttata taattgtatg acgaatataa acatacataa aaataacgag ttttactaat
     3001 attacaaatt tttatagtaa tttctcatgt acatattttt ttacagggta aataacaggc
     3061 aaaaaaaagc gcggggtggg gccgcgcaaa aagtatgaca tttttgtttg cagcaatttt
     3121 tatgaaaacg ttgccatact caaaaggcct aaggccaggc ggcgtaatgt tatttaaaca
     3181 attacgcctt cagcggaata gtggttacgc tttcacacac ataacgtggt aaataccgtc
     3241 aataatttca gtcccttcag tttcgtgttc aaatccaggg aaatggtggt cccaggattg
     3301 cagcgagcgt aaataactta cttgcggact gtttttatcg ccgaagtttt caccagacag
     3361 cagcatcggg attcctggcg gatatgggat aactgagttt gccgcgatgc gtcctggcag
     3421 attttcaatg gataccaatt cgacattgtt gtcgacaatc gcgttgtacg cttcacgcgg
     3481 ggtgatttcc gccaccggca ggccggaata ggcttcgttc aaccgtgcgc cagggttgtt
     3541 ttctttcagc caggcaaaca tggtgtcacc cagatcgtga atccccatgt tcgcgtaagt
     3601 gtcaggatat tgttcaacaa gttccggcat cacctgcgcc agcggtgtgt tggcgtcata
     3661 gtggcgtttg aaggagcaaa gggtgttaac cagagtcccc catttcccac gggttacgcc
     3721 catagagaac aggaacataa tttggaagtc agtggtgcgg gtaggcacaa tgccgtggcg
     3781 accaagccag gcagtgacca gcgccgccgg aacaccggtt tcttccagtt caccatcttc
     3841 acccattccc ggagcaagga tgctgacttt aatcgggtcg agcatactcc agttatccgg
     3901 aatatctttg aagccgtgcc agctttcgcc cggatgcatt acccagtagt cctgaacggt
     3961 ggtcagcagt ttggttggtg cgtcagcaaa gtcataggtt ttgccggttt gtgggtcggt
     4021 gacgacttct ttgttccacg gtttgaagaa ccagctaccg tcagcggtga actctttata
     4081 cagccgcgcc atcgcctgac ggaaatcaac cgcttcgtcg atcacttcct gcgtcagtga
     4141 caggccgctg ttgccgtcca tcatcgacac cgccacgtcg ttggatgcgc agatggcata
     4201 cagcggggag gtggtggcat gcatcatgta ggcctggttg aagcgggaga agttaatcgc
     4261 cccacgacct tcacgtacat gaatataaga agcctgtgaa agcgcattca gcagtttgtg
     4321 ggtggagtgg gtggcgaaaa cggtaggacc gttgtgatcg ctaggttcgc cgcgcatggc
     4381 atagtgatcg gcatagatcg ggttgaaacg tgcatagccg taccaggctt cgtcaaagtg
     4441 cagacgatcg gaggtttttt ccagcagatc ctgcgcttct ttagcgttat aacacacgcc
     4501 gtcataggtg cagttggtca ccacgcagta agacggtttt tgcccggctt tgtctttagt
     4561 cagcgggctt tcactgattt tcttctgcaa ggtttcaggt tgcatttcct gcggatagat
     4621 tggcccgata atgccgtagc ggttgcggct tggcaccatg tagaccggtt tcgcgcctgt
     4681 cagcatcaag ccttgttcga tggatttatg gcagttacgg tcaacgacca cgacatcgtt
     4741 atcggtcatg caagcctgca tgatggtgcg gttagagccg gaagtaccga cgactaccga
     4801 ccaggagcga tcggcaccaa atacgcgtgc ggcatatttt tcgctttcgc caaatgcgcc
     4861 agtatggtca agcaaagaac cgagggaagt tcgttcgatg cccatatcgg tgcggaacag
     4921 attttctcca tagtagtcat ggtagaaacg tccggcgggt gttttggtaa aaccaacgcc
     4981 gccctggtgg cctggcgctg cccaggaata ttcatggatg tcgctatatt tcatcagcgc
     5041 gctgaacagt ggcggcaaca gctgctggcg gtagcgggtc atagcggcaa cggcgcgtcc
     5101 ggcgataaag tcggtggtat cttccagaat ccaggcgaat tcatcgacaa gctccagcag
     5161 gtcgcgatcc attgcggcga gggctttttc ccgatcgccc aacaggaaga ccggcacgtt
     5221 ttgttggcgc tcatgaagct taccgatcaa ttgtctgacg ttttgatgtt cgtccggatg
     5281 ttccatttga tagctgaaca tcaggcagtc aatggcttcg tttgaagaga gaatggcaaa
     5341 accatcatca aaggaggtgg atttaatcac ggtaacattt tgctggctta aagcatctgc
     5401 cagacgctca acggcgttac cgacccaggt gtcttgatgg agaaactcgc tttcaacaat
     5461 taatactttc atcattgctt acccggttat gaaggaatct tcgttgcggg caagtatctt
     5521 ccggcctttt cgggctgtaa agcgcgtgaa aaacaaacat ttttgaaata tttattttta
     5581 taaacaatgc gttatgtgat tattttaaat tattttcact gcttgttatc gacggctaaa
     5641 ctattttttt ggctgatact gatatcgtct ttagccggga aacgtctggc ggcgctgttg
     5701 gctaagtttg cggtattgtt gcggcgacat gccgacatat ttgccgaacg tgctgtaaaa
     5761 acgactactt gaacgaaagc ctgccgtcag ggcaatatcg agaatacttt tatcggtatc
     5821 gctcagtaac gcgcgaacgt ggttgatgcg catcgcggta atgtactgtt tcatcgtcaa
     5881 ttgcatgacc cgctggaata tccccattgc atagttggcg ttaagtttga cgtgctcagc
     5941 cacatcgttg atggtcagcg cctgatcata gttttcggca atcaagccca gcatctggct
     6001 aacataaaat tgcgcatggc gcgagacgct gtttttgtgt gtgcgcgagg ttttattgac
     6061 tagaatcggt tcccagccag agaggctaaa tcgcttgagc atcaggccaa tttcatcaat
     6121 ggcgagctgg cgaatttgct cgttcggact gtttaattcc tgctgccagc ggcgcacttc
     6181 aaacgggcta agttgctgtg tggccagtga tttgatcatc atgccgtgag tgacgtggtt
     6241 aatcaggtct ttatccagcg gccaggagag aaacagatgc atcggcagat taaaaatcgc
     6301 catgctctga caggttccgg tatctgttag ttggtgcggt gtacaggccc agaacagcgt
     6361 gatatgaccc tgattgatat tcactttttc attgttgatc aggtattcca catcgccatc
     6421 gaaaggcaca ttcacttcga cctgaccatg ccagtggcta gtgggcatga tatgcggtgc
     6481 gcgaaactca atctccatcc gctggtattc cgaatacagc gacagcgggc tgcgggtctg
     6541 tttttcgtcg ctgctgcaca taaacgtatc tgtattcatg gatggctctc tttcctggaa
     6601 tatcagaatt atggcaggag tgagggagga tgactgcgag tgggagctcg gttttcaccc
     6661 tcttcccaga gaggcgaggg gagcgtccga gcatcatgag gccgaaaact ctgcttttca
     6721 ggtaacttat taccataaac tcagatttac tgctgcttca cgcaggatct gagtttatgg
     6781 gaatgctcaa cctggaagcc ggaggttttc tgcagattcg cctgccatga tgaagttatt
     6841 caagcaagcc aggagatctg catgatgact gcacccaaaa ttacatttat cggcgctggt
     6901 tcgacgattt tcgttaaaaa tattcttggt gatgtgttcc atcgagaggc gctgaaaacg
     6961 gcgcatattg ccctgatgga cattgatccc acccgcctgg aagagtcgca tattgtggtg
     7021 cgtaagctga tggattcagc aggggccagc ggcaaaatca cctgccacac ccaacagaaa
     7081 gaagccttac aggatgccga ttttgtcgtg gtggcatttc agattggcgg ttatgaacct
     7141 tgcacggtga ctgatttcga ggtctgtaag cggcatggtc tggaacaaac cattgccgat
     7201 acgttggggc cgggcggtat tatgcgcgcg ctacgtacca ttccgcatct gtggcaaatt
     7261 tgcgaggaca tgacggaagt ctgccccgat gccacattgc tcaactacgt taacccaatg
     7321 gcgatgaata cctgggcgat gtatgcccgc tatccgcata tcaaacaggt agggctgtgc
     7381 cattcggtgc agggaacggc ggaagagctg gcgcgtgacc tcaatatcga tccgtccacg
     7441 ctgcgttacc gttgcgctgg tatcaaccat atggcgtttt acctggaact ggagcgtaaa
     7501 accgccgacg gcagttacgt gaatctctac ccggaactgc tggcggctta tgaagcaggg
     7561 caggcaccga agccacatat tcatggtaat actcgctgcc agaatattgt gcgctacgaa
     7621 atgttcaaaa agctgggcta cttcgtcacg gaatcgtcag aacattttgc cgaatatacg
     7681 ccgtggttta ttaagccagg tcgtgaggat ttgattgagc gttataaagt accgctggat
     7741 gagtacccga aacgctgcgt cgagcagctg gcgaactggc ataaagagct ggaggagtat
     7801 aaaaacgcct cccggattga tattaaaccg tcacgggaat atgccagcac aatcatgaac
     7861 gctatctgga ctggcgagcc gagtgtgatt tacggcaacg tccgtaacga tggtttgatt
     7921 gataacctgc cacaaggatg ttgcgtggaa gtagcctgtc tggttgatgc taatggcatt
     7981 cagccgacca aagtcggtac gctaccttcg catctggccg ccctgatgca aaccaacatc
     8041 aacgtacaga cgctgctgac cgaagctatt cttacggaaa atcgcgaccg tgtttaccac
     8101 gccgcgatga tggacccgca tactgccgcc gtgctgggca ttgacgaaat atatgctctt
     8161 gttgacgacc tgattgccgc ccacggcgac tggctgccag gctggttgca ccgttaaaac
     8221 gcgactaaac gctactgcgc cgggggattt attccggcgc acacctctga cgataccaat
     8281 aacagaaggc gggcgttggt aacagcgacc cgatacccta tgagcatttc aatgactaca
     8341 aaactcagtt atggatttgg agcgttcggg aaggattttg cgatcggcat tgtgtatatg
     8401 tacctcatgt attactacac cgatgtcgtt gggctgtctg tgggtttggt cggtactttg
     8461 tttctggtgg cgaggatctg ggatgctatt aacgatccga ttatgg
//
LOCUS       DAJVUN010000171         8399 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.171, whole genome shotgun sequence.
ACCESSION   DAJVUN010000171 DAJVUN010000000
VERSION     DAJVUN010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8399
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.171"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..533
                     /locus_tag="OQQ76_003327"
                     /pseudo
     CDS             1..533
                     /locus_tag="OQQ76_003327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415171.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylcobalamin/alpha-ribazole phosphatase"
     gene            793..1110
                     /gene="rsfS"
                     /locus_tag="OQQ76_003328"
                     /gene_synonym="rsfA"
     CDS             793..1110
                     /gene="rsfS"
                     /locus_tag="OQQ76_003328"
                     /gene_synonym="rsfA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007373852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HCS1969705.1"
                     /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS
                     SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK
                     LWS"
     gene            1114..1581
                     /gene="rlmH"
                     /locus_tag="OQQ76_003329"
     CDS             1114..1581
                     /gene="rlmH"
                     /locus_tag="OQQ76_003329"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HCS1969706.1"
                     /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG
                     KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI
                     GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE"
     gene            1612..3513
                     /gene="mrdA"
                     /locus_tag="OQQ76_003330"
     CDS             1612..3513
                     /gene="mrdA"
                     /locus_tag="OQQ76_003330"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-transpeptidase MrdA"
                     /protein_id="HCS1969707.1"
                     /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI
                     VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL
                     DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG
                     YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL
                     HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT
                     DPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP
                     YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF
                     YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP
                     VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH
                     SGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE
                     RLRDHKLMTAFAPYNNPQVAVAIILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN
                     PAVAAAEDH"
     gene            3516..4628
                     /gene="mrdB"
                     /locus_tag="OQQ76_003331"
                     /gene_synonym="rodA"
     CDS             3516..4628
                     /gene="mrdB"
                     /locus_tag="OQQ76_003331"
                     /gene_synonym="rodA"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="rod shape-determining protein RodA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase MrdB"
                     /protein_id="HCS1969708.1"
                     /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG
                     MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW
                     LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL
                     GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE
                     SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG
                     ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV
                     PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV"
     gene            4639..5727
                     /gene="rlpA"
                     /locus_tag="OQQ76_003332"
     CDS             4639..5727
                     /gene="rlpA"
                     /locus_tag="OQQ76_003332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic peptidoglycan transglycosylase RlpA"
                     /protein_id="HCS1969709.1"
                     /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS
                     GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD
                     PTQLTAAHPTLPLPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
                     NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP
                     VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPA
                     MVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP
                     FASKAEASTLQQRLQTEAQLQSFITTAQ"
     gene            5867..7078
                     /gene="dacA"
                     /locus_tag="OQQ76_003333"
     CDS             5867..7078
                     /gene="dacA"
                     /locus_tag="OQQ76_003333"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase DacA"
                     /protein_id="HCS1969710.1"
                     /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQI
                     DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQTMKAGKFKETDLVTIGN
                     DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG
                     LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT
                     FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG
                     REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDMYLTIPRGRM
                     KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID
                     YIKLMFHHWFG"
     gene            7189..7452
                     /locus_tag="OQQ76_003334"
     CDS             7189..7452
                     /locus_tag="OQQ76_003334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HCS1969711.1"
                     /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT
                     PTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMVL"
     gene            7553..8194
                     /gene="lipB"
                     /locus_tag="OQQ76_003335"
     CDS             7553..8194
                     /gene="lipB"
                     /locus_tag="OQQ76_003335"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415163.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HCS1969712.1"
                     /translation="MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHY
                     PVFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELV
                     TLLEQTVVNTLAELGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL
                     SPFLRINPCGYAGMEMAKISQWKPEATTNNIAPRLLENILALLNNPDFEYITA"
BASE COUNT         2024 a         2154 c         2181 g         2040 t
ORIGIN      
        1 tgaccgcgcg cggtattgag caagcgcaaa atctgcatac gctgctacat ggtgttttct
       61 ttgatctggt tttatgcagt gaactggaac gggcacagca taccgcgcga ctggttctca
      121 gtgaccgcca gctccccgtg caaatcatcc ctgaactcaa cgaaatgttt tttggcgact
      181 gggagatgcg acatcatcgc gacctcatgc aagaagatgc cgaaaactat agcgcgtggt
      241 gcaatgactg gcagcatgca atccccacga acggtgaagg atttcaggca ttttcgcaac
      301 gtgtggaacg ctttatcgca aggcttagtg aatttcagca ctatcagaat attttagtcg
      361 tcagccatca gggtgtactg agtctgttaa tcgcccgttt aattggcatg cctgccgagg
      421 ctatgtggca ttttcgcgtt gactaggggt gttggagcgc cattgatatc aaccaaaaat
      481 tcgcgacgct acgcgtcctc aatagccgtg ccatcggggt cgataatgca tgacttttct
      541 gtttttttac gggtaagccg caacgaccat tgacagaccc gggcaggctg atattctccg
      601 cagccagact tttttcgcca gacacgactt tgtagaaatt gttttacaaa aatggcgatg
      661 caatctgcgg cgcggggtgg gatgatagcc cactttcgaa agccgattcg gcgacaattg
      721 tcccgaaatc gcctctggtt caggtatact gacagaccat ttttatctat ttgattcacc
      781 cagggggaaa acttgcaggg taaagcactc caggattttg ttatcgacaa aattgatgac
      841 ctcaaaggtc aggacatcat cgccttagac gttcaaggca aatccagcat caccgactgc
      901 atgatcatct gtacgggtac gtccagccgt catgttatgt ccattgctga ccacgttgtg
      961 caggagtctc gcgcagcggg cctgttaccg ctcggcgtag aaggtgaaaa cagcgccgac
     1021 tggattgtcg tggatttggg cgatgtgatt gtccatgtca tgcaggaaga gagccgtcgc
     1081 ctgtatgaac tggaaaaact ctggagttaa tgcgtgaagc tgcaacttgt cgccgtggga
     1141 acgaaaatgc cggactgggt acaaaccggt tttaccgagt acctgcgtcg ttttccgaaa
     1201 gatatgccct tcgagctgat tgaaattccg gccggaaaac gcggcaagaa tgcggacatc
     1261 aagcgcatac tcgacaaaga gggtgagcag atgttggcgg ccgcaggcaa aaaccgcatt
     1321 gtcaccctcg atattccagg caagccctgg gatacgccgc agttagccgc tgagctggaa
     1381 cgctggaagc tggatggtcg cgacgtcagt ctactgattg gcgggcctga agggttgtcg
     1441 cctgcctgta aagcggcggc ggagcagagc tggtcgctgt cggcgcttac cctcccccat
     1501 ccgctggttc gcgtgctggt cgcagagagt ctgtaccggg cgtggagcat caccaccaac
     1561 catccttatc accgtgagtg ataagggagc tttgagtaga aaacgcagcg gatgaaacta
     1621 cagaactctt ttcgcgacta tacggcagag tccgcgctgt ttgtgcgccg ggcgctggtc
     1681 gcctttttgg ggattttgct gctgaccggc gtgcttatcg ccaacctgta taatctgcaa
     1741 attgttcgct ttaccgacta ccagacccgc tctaatgaaa accgcattaa gctggtgcct
     1801 atcgcgccca gccgcggcat tatttacgac cgtaatggta tccctctggc cctcaaccgc
     1861 actatctacc agatagaaat gatgccagag aaagtcgata acgtgcagca aacgctggac
     1921 gctttgcgca gcgtggttga tctgaccgat gacgatattg ctgcattccg aaaagagcgc
     1981 gcacgttcac accgtttcac ctctattccc gtgaaaacta acctgaccga agtacaagta
     2041 gctcgctttg ccgtcaatca gtaccgtttt ccgggggttg aagttaaagg ctataaacgt
     2101 cgttactatc cttacggttc ggcgttgacc cacgtcatcg gctatgtgtc gaaaatcaac
     2161 gataaagacg tcgaacgcct gaataatgac ggcaaactgg ccaactatgc ggcaacgcat
     2221 gatatcggta agctgggcat tgagcgttac tatgaagacg tgctgcacgg tcagaccggt
     2281 tatgaagagg ttgaagttaa caaccgtggg cgtgttatcc gccagttaaa agaagtacca
     2341 ccgcaagccg gacacgatat ttacctgacg ctggatctca aactccagca atatattgaa
     2401 acgctgctgg cgggtagccg cgcagctgtg gtagtcaccg atccgcgtac aggtggggtg
     2461 ctggcgctgg tttccacgcc tagttatgac ccaaacttgt ttgttgacgg tatctccagc
     2521 aaagattatt ccgccttgtt gaacgacccg aatacaccgc tggtgaaccg cgccacacag
     2581 ggggtttatc ctcccgcgtc tacagttaaa ccctatgtgg cggtttcggc attgagcgcc
     2641 ggggtgatca cgcgcaatac gacgctgttt gacccaggct ggtggcaact gccaggttcg
     2701 gaaaaacgtt atcgtgactg gaaaaaatgg ggccacgggc gtctgaatgt cacaagatcg
     2761 ctggaagaat ctgcggatac cttcttctat caggtggcct acgatatggg gatcgatcgc
     2821 ctctccgaat ggatgggtaa attcggttat ggtcattaca ccggtatcga cctggcggaa
     2881 gaacgttccg gcaacatgcc tacccgcgaa tggaaacaga aacgctttaa aaaaccgtgg
     2941 tatcagggtg acaccattcc ggttggtatc ggtcagggtt actggacagc gaccccaatc
     3001 cagatgagta aggcactgat gatcctgatt aatgacggta tcgtgaaggt tccgcatttg
     3061 ctgatgagca ccgccgaaga cggcaaacag gtgccatggg tacaaccgca tgaaccgccc
     3121 gtcggcgata ttcattccgg ttactgggag ctggcgaaag acggtatgta cggtgttgct
     3181 aaccgcccta acggtacggc gcataaatac tttgccagcg caccgtacaa aattgcggcg
     3241 aaatctggta ccgctcaggt cttcggtctg aaagcgaacg aaacctataa tgcgcacaaa
     3301 attgccgagc gtttacgtga ccacaaactg atgaccgcct ttgcgccata caacaatccg
     3361 caagtggctg tcgccattat tctggagaac ggcggcgcgg gtccggcggt tggtacgctg
     3421 atgcgtcaga tcctcgacca cattatgctg ggtgataaca acaccgatct gcctgcggaa
     3481 aatccagcgg ttgccgcagc ggaggaccat taatcatgac ggataatccg aataaaaaaa
     3541 cattctggga taaagtccat ctcgatccca caatgctgct gatcttactg gcattgctgg
     3601 tttacagcgc cctggttatc tggagcgcca gcggtcagga tattggcatg atggagcgta
     3661 aaatcggcca aatcgcaatg ggtctggtca tcatggtggt gatggcgcaa attcctccac
     3721 gcgtttatga aggctgggcc ccctatctct atatcatctg tattattttg ctggtggcgg
     3781 tagatgcttt cggtgccatc tctaaaggtg ctcaacgctg gctggacctc ggtattgttc
     3841 gttttcagcc gtcggaaatt gccaaaatag ccgtaccact gatggttgcg cgctttatca
     3901 accgcgatgt ttgcccaccg tcgttgaaga acacaggcat cgcgctggtg ctgatattta
     3961 tgcccacgct gctggtggct gcacagcctg acctgggaac atcaatcctc gttgcgcttt
     4021 ccggtctgtt tgtactgttc ctctctggcc ttagctggcg tctgattggc gtcgcagtag
     4081 tgctggtggc ggcgttcatt cctattctgt ggttcttcct gatgcatgat taccagcgcc
     4141 agcgcgtaat gatgctcctg gacccggaat cagacccact cggcgcgggc tatcacatta
     4201 ttcagtctaa aattgctatt ggctccggcg gattacgcgg caaaggctgg ctgcatggca
     4261 ctcagtcaca acttgaattt ctacccgaac gccataccga ctttatcttc gcggtactgg
     4321 cggaagagct gggattagtg ggcattttga ttctgctcgc tctctacatt ctgctgatca
     4381 tgcgcgggct gtggatagcc gccagagcgc aaaccacctt tggtcgcgtc atggctggcg
     4441 gcttaatgct gatattattc gtttatgtct tcgtaaatat tggtatggta agcggtattc
     4501 tgccggttgt aggggttccg ctcccactgg tcagttatgg aggatcagcg ctaattgtgc
     4561 tgatggctgg gttcgggatt gtaatgtcaa tccacaccca caggaaaatg ttgtcgaaaa
     4621 gcgtgtaaga ggtgcgcaat gcgtaagcag tggctcggga tctgcatcgc ggcaggaatg
     4681 ctcgcggcat gtacaagcga tgatggtcag caacagacgg taagtgtacc gcagcctgcg
     4741 gtatgtaacg gccccatagt tgaaattagc ggggcggacc cgcgtttcga accactgaac
     4801 gcgacggcaa atcaggatta ccagcgcgac ggtaaaagct acaaaatcgt gcaggatccg
     4861 tctcgattta gccaggcggg actggcggca atctatgatg ccgaaccagg cagtaacctg
     4921 acggcctctg gcgaagcttt cgatccgaca cagctgacgg cggcccatcc aacgcttccg
     4981 ctccccagct acgccagaat cactaacctg gctaacgggc gaatgatcgt ggtgcgcatt
     5041 aatgatcgcg gcccttacgg caacgaccgc gttatttcgc tttctcgcgc ggcagctgac
     5101 cgtcttaaca cgtcaaacaa caccaaagtt cgtatcgatc cgattattgt cgcccaggat
     5161 ggttcgcttt ctggtcctgg tatggcttgt accacagtcg ccaaacagac ttacgccctg
     5221 cctgcacctc ccgatttaag cggtggcgcg ggaacaagtt cagtgtctgg cccgcagggt
     5281 gacattcttc cggtcagtaa ttcgacgcta aaaagcgaag atccgaccgg cgcgccggta
     5341 accagtagcg gtttcctcgg cgcaccaacg accttagcgc ctggtgtact ggaaggcagc
     5401 gaaccgacgc ctgcgccaca gcccgttgtt acagctccgt cgacaacgcc tgcaacctcg
     5461 cctgcaatgg tgacaccgca agccgcctcg caaagcgcca gcggcaactt tatggtgcaa
     5521 gtcggggccg ttagcgatca ggctcgtgcg caacagtacc aacagcaact gggacagaag
     5581 ttcggcgtcc ccggtcgcgt aactcaaaat ggcgcggtct ggcggatcca gcttggcccc
     5641 ttcgccagca aagccgaagc cagtaccttg cagcaacgtt tgcaaaccga agcccaatta
     5701 cagtcattta ttaccaccgc gcagtagcgt aaagcaggca tctgatgtgt caatttctgt
     5761 aaatgacgtt aacaaagtca cgcggaaagt cagatgcctg ccggtagtgc atttgctata
     5821 gtagggcact ttttttaatt ccatcacgga tgtcgtagtt cagaccatga ataccatttt
     5881 ttccgctcgt atcatgaagc gcctggcgct caccacggct ctttgcacag cctttatctc
     5941 tgctgcacat gccgatgacc tgaatatcaa aactatgatc ccgggtgtac cgcagatcga
     6001 tgcggagtcc tacatcctga ttgactataa ctccggcaaa gtgctcgccg aacagaacgc
     6061 agatgtccgc cgcgatcctg ccagcctgac caaaatgatg accagttacg ttatcggcca
     6121 aacaatgaaa gccggtaaat ttaaagaaac tgatttagtc actatcggca acgacgcatg
     6181 ggccaccggt aacccggtgt ttaaaggttc ttcgctgatg ttcctcaaac cgggcatgca
     6241 ggttccggtt tctcagctga tccgcggtat taacctgcaa tcgggtaacg atgcttgtgt
     6301 cgccatggct gattttgccg ctggtagcca ggacgctttt gttggcttga tgaacagcta
     6361 cgttaacgcc ctgggcctga aaaacaccca cttccagacg gtacatggtc tggatgctga
     6421 tggtcagtac agctccgcgc gcgatatggc gctgatcggc caggcgttga tccgtgacgt
     6481 accgaatgaa tactcgatct ataaagaaaa agaatttacg tttaacggta ttcgccagct
     6541 gaaccgtaac ggcctgttat gggataacag cctgaatgtc gacggcatca aaaccggaca
     6601 cactgacaaa gcaggttaca accttgttgc ttctgcgact gaaggccaga tgcgcttgat
     6661 ctctgcggtg atgggcggac gtacttttaa aggccgtgaa gccgaaagta aaaaactgct
     6721 gacctggggc ttccgtttct tcgaaaccgt taacccactg aaagtaggta aagagttcgc
     6781 ctctgaaccg gtttggtttg gtgattctga tcgcgcttcg ttaggggttg ataaagacat
     6841 gtacctgacc attccgcgtg gtcgcatgaa agatctgaaa gccagctatg tgctgaacag
     6901 cagtgaattg catgcgccgc tgcaaaagaa tcaggtcgtc ggaactatca acttccagct
     6961 tgatggcaaa acgatcgagc aacgcccgct ggttgtgttg caagaaatcc cggaaggtaa
     7021 cttcttcggc aaaatcattg attacattaa attaatgttc catcactggt ttggttaaaa
     7081 attgaacact tgaaagtgta atttccgtcc ccatatacta agcatcagta aaaaaactcc
     7141 cgccttctgg cgggagttgc tatttaatta cgttacgccg gagctgacat gaaaaccaaa
     7201 cttaacgaac tgcttgaatt ccctactcct tttacttaca aagttatggg gcaggcgtta
     7261 cctgagctgg ttgatcaggt ggttgaagtg gtacagcgcc atgcgccagg tgactacacc
     7321 ccaacggtaa aaccaagcag caaaggcaac taccactcgg tatctatcac tatcaacgcc
     7381 actcatatcg agcaggttga aacactgtat gaagaactgg gcaaaatcga tattgtccgc
     7441 atggttctgt aactcgcttc tccgttaccc ggctcctggt cgggtaactc ccctctcctc
     7501 gctgtgatat acttttcccc cacttttact cattctccac ggagatgccg ttttgtatca
     7561 ggataaaatt cttgtccgcc agctcggtct tcagccttac gagccaatct cccaggctat
     7621 gcatgaattc accgataccc gcgatgatag tacccttgat gaaatctggc tggtcgagca
     7681 ctatccggta ttcacccaag gtcaggcagg aaaagcggag cacattttaa tgccgggtga
     7741 tattccggtg atccagagcg atcgcggtgg gcaggtgact tatcacgggc cgggacaaca
     7801 ggtgatgtat gtgttgctta acctgaaacg ccgtaaactc ggtgtgcgtg aactggtgac
     7861 cttgcttgag caaacagtgg tgaataccct ggctgaactg ggtatagaag cgcatcctcg
     7921 ggctgacgcg cctggtgtct atgtcgggga aaagaaaatt tgctcactgg gtttacgaat
     7981 tcgacgcggt tgttcattcc acggtctggc attaaacgtc aatatggatc tttcaccatt
     8041 tttacgtatt aatccttgtg ggtatgccgg aatggaaatg gctaaaatat cacaatggaa
     8101 acccgaagcg acgactaata atattgctcc acgtttactg gaaaatattt tagcgctact
     8161 aaataatccg gacttcgaat atattaccgc ttaattccat acatcaatgg cccaatttac
     8221 actgggtcat tactcataat acctgctaat gctttacatc tccttcgcgt ttgtatattt
     8281 tctttatcac ttgcagaaat gcggtgccac gccttgctcc gtaactcagc ccattgatta
     8341 acctattgaa atagttgatt atggtgagca aaagcgttcc gttccaatta gacataaga
//
LOCUS       DAJVUN010000172         8336 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.172, whole genome shotgun sequence.
ACCESSION   DAJVUN010000172 DAJVUN010000000
VERSION     DAJVUN010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8336
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.172"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            194..1179
                     /locus_tag="OQQ76_003336"
                     /pseudo
     CDS             194..1179
                     /locus_tag="OQQ76_003336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001560258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2713 domain-containing protein"
     gene            1542..2579
                     /gene="dusA"
                     /locus_tag="OQQ76_003337"
     CDS             1542..2579
                     /gene="dusA"
                     /locus_tag="OQQ76_003337"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HCS1969713.1"
                     /translation="MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYF
                     LRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEA
                     RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDD
                     QDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF
                     PHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDAYPV
                     AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVL
                     EHALKLVADKR"
     gene            2713..2955
                     /gene="pspG"
                     /locus_tag="OQQ76_003338"
     CDS             2713..2955
                     /gene="pspG"
                     /locus_tag="OQQ76_003338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response protein PspG"
                     /protein_id="HCS1969714.1"
                     /translation="MLELLFVIGFFVMLMVTDVSLLGIITALVVATAIMFLGGMLALM
                     IKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY"
     gene            complement(3120..4103)
                     /locus_tag="OQQ76_003339"
     CDS             complement(3120..4103)
                     /locus_tag="OQQ76_003339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HCS1969715.1"
                     /translation="MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFID
                     TYIRSGLYPPPSLPSGSGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIN
                     ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQW
                     AKALGAKLIGTVGTAQKAQSALKAGAWQVINYREENLVERLKEITGGKKVRVVYDSVG
                     RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREEL
                     TEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP"
     gene            4186..5601
                     /gene="dnaB"
                     /locus_tag="OQQ76_003340"
     CDS             4186..5601
                     /gene="dnaB"
                     /locus_tag="OQQ76_003340"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HCS1969716.1"
                     /translation="MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLD
                     NERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGG
                     FAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
                     AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKT
                     AGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASL
                     SRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREH
                     GGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR
                     ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
                     LTFNGQWSRFDNYAGPQYDDE"
     gene            5654..6733
                     /gene="alr"
                     /locus_tag="OQQ76_003341"
     CDS             5654..6733
                     /gene="alr"
                     /locus_tag="OQQ76_003341"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCS1969717.1"
                     /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLE
                     TARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNE
                     EQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHF
                     ARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS
                     PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD
                     GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERI
                     AEMTKVSAYELITRLTSRVAMKYVD"
     gene            6986..8179
                     /gene="tyrB"
                     /locus_tag="OQQ76_003342"
     CDS             6986..8179
                     /gene="tyrB"
                     /locus_tag="OQQ76_003342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709866.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HCS1969718.1"
                     /translation="MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIP
                     QLKAVAEAEARLNAQPHGASLYLPMEGLNSYRHAIAPLLFGADHPVLQQQRVATIQTL
                     GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNSVRF
                     NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGF
                     SAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVLCEDAEAAGRVLGQL
                     KATVRRNYSSPPNLGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM
                     PERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKA
                     FAAVM"
BASE COUNT         2097 a         1931 c         2128 g         2180 t
ORIGIN      
        1 tgtcgtacca ttatcaacat gataataatt aataattcat ttttaaataa attgcttcaa
       61 gttaactcgc tatttattta actgggttta aacgcatacc tgtagttcag aaattatgag
      121 cgatttttga tagtgaccag atggcaaaag aattataagg aggacacggt acgacaaaaa
      181 aggtagatga atcatgttga agataatacc cggtgcaact ggatacttta ataaaacact
      241 caattcaaat caattcgata atgaagatgc aatcaaagat aaattagata atagaggttc
      301 aatcaaaggt aaattaaata atatatatgg taaatctatt gattatgcag cgctgcgtca
      361 tcgggatata attattgcaa aaatagattt gtttattcaa cgaatcacgc ataatttatg
      421 gcatgcacgt aaaaaaatgt gtttttaatt gagcaaataa atgatctcaa aatgtgggtc
      481 aataagtata ttgacgattg cactgatgag gatttaaacg atcgtgactt tattgcatca
      541 gttgttgacc gggctatttt tcatttcgcg attaatagta tatgtaatcc tggggataat
      601 aaagatgcga ctcccattga acaatgtact tttgatgtag aaactaagaa tggccttccc
      661 tccacggttc agctatttta tgaggaatct aaggataatg aacctttagc gaatatacat
      721 tttcaagcaa taggttctgg ttttttaacg tttgttaatg cctgccagga acatgatgac
      781 aacagcttaa aattatttgc ttcgctgtta atttcacttt catattctag tgcctacgca
      841 gatttatcag aaacagtgta tattaatgaa aataatgaga gctacctgaa agctcagttt
      901 gaaaaattat ctcaacgtga tatgaagaag tacctgggag agatgaagcg tctggctgat
      961 gggggagaaa tgaattttga tggctatctg gataagatgt cacatctggt gaatgaaggg
     1021 acgctcgatc ctgatatttt aagcaaaatg cgagatgctg caccacaatt aattagcttc
     1081 gcgaagtcgt ttgacccaac ctcaaaggaa gagattaaaa tacttacaga cacttctaaa
     1141 ttaatttatg atttgttcgg ggttaaatcg gagaaataat atgtgaagtt cttcgatagt
     1201 atggaaggca ttatataaaa ggacccaata tttattgggt ccttttttct ctatcaatgc
     1261 tattagcagg gagatatatc accagagttt aatgtgtgat tttttattta tcgtcgaacc
     1321 tggattgttt atcattggcc ttaacaaagt taacggctaa taagattatt tccatcactt
     1381 cgtgagagct tcatgccttg agaggatctc aattttcttt tgcaatgaga caggcgcttc
     1441 ctgttgttat ggtatagtac cccgctattg agcctcctga atagtgatgc tgaataacat
     1501 aaccccatga tatatcgata aaataatctc tacatttgaa aatgcacggt aattctgaaa
     1561 tgcaaaaaat caaccaaacc agcgcaatgc ctgaaaaaac tgacgttcac tggagtggtc
     1621 ggtttagcgt tgcaccaatg ctcgactgga cggacagaca ttgccgctat ttcttgcgtc
     1681 tgctttcccg caatacgttg ctgtataccg aaatggtgac cacaggggcg attattcacg
     1741 gtaaaggtga ttacctggcg tacagtgaag aagaacatcc ggtagcgttg caactcggcg
     1801 gtagcgatcc ggcggcgctg gcacagtgtg cgaagctggc agaagcgcgt ggatatgatg
     1861 agatcaacct gaatgtcggc tgcccgtctg accgggtgca gaacggcatg tttggtgcgt
     1921 gtctgatggg taatgcgcag ctggttgccg attgcgtgaa agcgatgcgc gatgtggtgt
     1981 cgattccggt gacggtgaaa acgcgtattg gcatcgatga ccaggacagc tatgaatttc
     2041 tctgcgattt catcaacacc gtttccggca aaggcgagtg tgggatgttc atcatccatg
     2101 cacgtaaagc ctggctttcg gggttaagcc cgaaagaaaa ccgtgaaatc ccgccgctcg
     2161 attatccgcg tgtgtatcaa ctgaagcgtg actttccgca tctgacaatg tcgattaacg
     2221 gtggtatcaa gtcgctggaa gaggccaaag cacacctgca acatatggat ggcgtgatgg
     2281 tcgggcgcga ggcgtatcag aatccgggta ttctggcggc ggtagaccgg gagatctttg
     2341 gttcctcgga taccgatgcc tatccggtgg cggtagtgcg cgccatgtat ccgtacattg
     2401 agcgtgaact cagccagggg acgtatctcg gccatattac ccggcatatg ttgggcttgt
     2461 tccagggtat tcctggcgcg cggcagtggc ggcgttattt aagtgaaaat gcccataaag
     2521 cgggtgcaga cattaatgtg ttggaacacg cgctcaaact ggtggcggat aagcgttaac
     2581 ttttcaccaa aaagtagtca aattcaccac gccctgcgca ccgtcgcggg gcgttttgct
     2641 gttaaatcaa tagattattt ttggcatgat tcttgtaatg ccagcaagag atttcatatt
     2701 tgggagagca tcatgctgga actacttttt gtgattggct tttttgtcat gctgatggtc
     2761 accgacgttt cgttgctggg cattatcacc gcgctggttg tggcgacggc cattatgttc
     2821 ctcggcggta tgctggcatt gatgattaag ttgctgccgt ggttactact ggcgattgcg
     2881 gtggtgtggg ttattaaggc gattaaagca ccaaaagtgc ctaaatatca gcgttatgac
     2941 cgctggcgtt actaagggat tgtgcggatg atcacaacct aaggttttat ccttagaaca
     3001 aaataggaat tgataatcaa atctgtcact attgcgcctc taacagattc atcgtgctgt
     3061 accctacata cagccgacta taaaaagaaa gggcttccca ggtggaagcc ctatttcttt
     3121 tatggaatca gcaggctgga accttgcgtc gcccggcttt ccagaatctc atgcgcacgc
     3181 tgcgcatcct tcagcggata tttctgctgc tcggcgacat cgaccttaat cacaccgctg
     3241 gcaatcaaag agaacagttc attactggcc tcggttaatt cctcccgcgt ggtgatatag
     3301 ccttgcaggg aagggcgtgt cacatacaac gagccttttt gattgagaat gcctaagttc
     3361 acaccggtaa ccgcacctga tgagttgcca aaactgacca ttaagccgcg gcgttgcagg
     3421 caatccagcg accgttccca ggtgtctctg cccacggaat cgtacactac gcgcactttc
     3481 ttaccgccgg tgatctcttt caatcgctcg accagattct cttcacgata gttaataacc
     3541 tgccacgcgc cggcttttag cgcgctctgc gctttttgcg cggttcctac ggtgccgata
     3601 agtttcgcgc ccagagcttt tgcccactgg caggcaatca agccaacgcc gccagccgct
     3661 gcgtggaaca ggaactgttc atcgggttta atttcatagg ttttgcgcag cagataataa
     3721 accgttaagc ctttcaggaa agatgctgca gcttgctcaa aagaaatagc cgcaggcaga
     3781 atcgccgctt tatccgcatt aatgttatgc acagagctgt aagcgcctaa cgccgactgc
     3841 gcatagacta cacgatcgcc tgccttaata tgctttacac cactgccgac tttactcacg
     3901 atgcctgccg cttcggtacc tgatccgctg ggtagtgatg gcggcgggta aaggccgctg
     3961 cggatatacg tgtcgataaa attgatgccg atggctttat tttcgacctg gatttcattc
     4021 tctgccggat cggcaggagt gaactctacg gcttgaagta cttccgggcc accgtgcttg
     4081 tgaaattcaa ttcgtgttgc catgtgtcct ccagaacgta tcgtcagggt ctgcttcata
     4141 tggtaaagtt tcgacccatt ctttatctcg gtaactccat tcactatggc aggaaataaa
     4201 cccttcaaca aacagcaggc tgaaccccgc gaacgcgatc cacaagttgc cgggctgaaa
     4261 gtgcctccgc actcgatcga agcggagcag tcggtgttgg gcggtttaat gctggataac
     4321 gaacgctggg acgatgtagc cgagcgtgtg gtggcagacg atttttacac ccgcccacac
     4381 cgccatatct ttactgaaat ggcgcgtttg caggaaagcg gtagtcctat cgatctgatt
     4441 acccttgcgg aatcgctgga acgccagggg caactcgata gcgtcggtgg ttttgcttat
     4501 ctggcagagc tgtcaaaaaa tacgccaagt gcggcgaaca tcagtgctta tgctgacatc
     4561 gtgcgtgaac gtgccgttgt ccgtgagatg atctcggttg cgaatgagat tgctgaagcc
     4621 ggttttgatc cgcaggggcg taccagcgaa gatctgctgg accttgctga atcccgcgtc
     4681 tttaaaattg ccgaaagtcg tgcaaacaaa gacgaagggc cgaagaacat cgccgatgtg
     4741 ctcgacgcaa ccgtggcgcg tattgagcag ttgtttcagc agccacacga tggcgttacc
     4801 ggagtaaaca ccggttatga cgatctcaac aaaaaaaccg ctggcttgca gccgtcggat
     4861 ttgatcatcg tcgccgcgcg tccgtcgatg ggtaaaacaa catttgcgat gaacctcgtc
     4921 gaaaacgcgg cgatgttgca ggataaacca gtacttatct tctcgctgga gatgccttca
     4981 gaacagatta tgatgcgttc tctggcgtcg ctgtcgcgcg ttgaccagac taaaatccgt
     5041 accgggcagc tcgatgatga agactgggcg cgcatttccg gcaccatggg tattttgctc
     5101 gaaaaacgca atatctatat cgatgactcc tccggcctga cgccaacgga agtgcgttcc
     5161 cgcgcacgcc gtattgcccg tgaacacggc ggcatcgggc ttatcatgat cgactacctg
     5221 caactgatgc gcgtaccggc gctttccgat aaccgtacgc tggaaattgc agaaatctct
     5281 cgctcgctga aagcactggc gaaagaactg aacgtgccgg tggtggcgct gtcccagttg
     5341 aaccgttctc tggaacaacg tgccgacaaa cgcccggtca actccgacct gcgtgaatct
     5401 ggctctatcg agcaggatgc ggacttgatc atgtttatct atcgtgatga ggtgtatcac
     5461 gaaaacagtg atttaaaagg catcgcggaa attattatcg gtaaacaacg taacggccca
     5521 atcgggacgg tacgcctgac ctttaacggt caatggtcgc gcttcgacaa ctatgcgggg
     5581 ccgcagtacg acgacgaata ataattattt tatgaattag gtaattaaag caaacactta
     5641 tcaaggaaca caaatgcaag cggcaactgt tgtgattaac cgccgcgctc tgcgacacaa
     5701 cctgcaacgt cttcgtgaac tggcccctgc cagtaaaatg gttgcggtgg tgaaagcgaa
     5761 cgcttatggt cacggtcttc ttgagaccgc gcgaacgctc cccgatgctg acgcctttgg
     5821 cgtagcccgt ctcgaagaag ctctgcgact gcgtgcgggg ggaatcacca aacctgtact
     5881 gttactcgaa ggcttttttg atgccagaga tctgccgacg atttctgcgc aacattttca
     5941 taccgccgtg cataacgaag aacagctggc tgcgctggaa gaggctagcc tggacgagcc
     6001 ggttaccgtc tggatgaaac tcgataccgg tatgcaccgt ctgggcgtaa ggccggaaca
     6061 ggctggggcg ttttatcatc gcctgacaca gtgcaaaaac gttcgtcagc cggtgaatat
     6121 cgtcagccat tttgcgcgcg cggatgaacc aaaatgtggc gcaaccgaga aacaactcgc
     6181 tatctttaat accttttgcg aaggcaaacc tggtcaacgt tccattgccg cgtcgggtgg
     6241 cattctgctg tggccacaat cgcattttga ctgggtgcgc ccgggcatca ttctttatgg
     6301 cgtctcgccg ctggaagatc gctccaccgg tgccgatttt ggctgtcagc cagtgatgtc
     6361 actaacctcc agcctgattg ccgtgcgtga gcataaagcc ggagagcctg ttggttatgg
     6421 tggaacctgg gtaagcgaac gtgatacccg tcttggcgta gtcgcgatgg gctatggcga
     6481 tggttatccg cgcgccgctc catccggtac gccagtgctg gtgaacggtc gcgaagtacc
     6541 gattgtcggg cgcgtggcga tggatatgat ctgcgtagac ttaggtccac aggcgcagga
     6601 caaagccggg gatccggtca ttttatgggg cgaaggtttg cccgtagaac gtatcgctga
     6661 aatgacaaaa gtgagcgctt acgaacttat tacgcgcctg acttcaaggg tcgcgatgaa
     6721 atacgtggat taatcgttct gtaatatttg attgtctgtg ccggatgcgg cgtgaatgcc
     6781 ttatccggcc aataaaatcc taaaaattca ataagttgat gttctttcat gctcttataa
     6841 aggtcgtgcc tctggcggat gttcgtttgt catgagtctc actctgttgc taattgccgt
     6901 tcgctcctga acatccactc gatcttcgcc ttcttccggt ttattgtgtt ttaaccacct
     6961 gcccgtaaac ctggagaacc atcgcgtgtt tcaaaaagtt gacgcctacg ctggcgaccc
     7021 gattcttacg cttatggagc gttttaaaga agaccctcgc agcgacaaag tgaatttaag
     7081 tatcggtctg tactacaacg aagacggaat tattccacaa ctgaaagccg tggcggaggc
     7141 ggaagcgcgc ctgaatgcgc agccccatgg cgcttcgctt tatttaccga tggaagggct
     7201 taacagctat cgccatgcca ttgcgccgct gctgtttggt gcggaccatc cggtactgca
     7261 acaacagcgc gtagcaacca ttcaaaccct tggcggctca ggggcattga aagtgggcgc
     7321 ggatttcctg aaacgctact tcccggaatc aggcgtctgg gtcagcgatc ctacctggga
     7381 aaaccacgta gcaatattcg ccggggctgg attcgaagtg agtacttacc cctggtatga
     7441 cgaagcgact aacagcgtgc gctttaatga cctgttggcg acgctgaaaa cattacctgc
     7501 ccgcagtatt gtgttgctgc atccatgttg ccacaaccca acaggtgccg atctcactaa
     7561 tgatcagtgg gatgcggtga ttgaaattct caaagcccgc gagcttatcc cattcctcga
     7621 tattgcctat caaggattta gtgccggtat ggaagaggat gcctacgcta ttcgcgccat
     7681 tgccagcgct ggattacccg ctctggtgag caattcgttc tcgaaaattt tctcccttta
     7741 cggcgagcgc gtcggcggac tttctgttct gtgtgaagat gccgaagccg ctggccgcgt
     7801 actggggcaa ttgaaagcaa cagttcgccg caactactcc agcccgccga atttgggtgc
     7861 gcaggtggtg gctgcagtgc tgaatgacga ggcattgaaa gccagctggc tggcggaagt
     7921 agaagagatg cgtactcgca ttctggcaat gcgtcaggaa ttggtgaagg tattaagcac
     7981 agagatgcca gaacgcaatt tcgattatct gcttaatcag cgcggcatgt tcagttatac
     8041 cggtttaagt gccgctcagg ttgaccgact acgtgaagaa tttggtgtct atctcatcgc
     8101 cagcggtcgc atgtgtgtcg ccgggttaaa tacggcaaat gtacaacgtg tggcaaaggc
     8161 gtttgctgcg gtgatgtaat gcaggaaagc aggctggagt tacccagcct gcagtgaaat
     8221 taaactgtcg tcgctttcac tatttctttg tagatgattt ttttgatgcc gttgttctac
     8281 gtgagagata ataaaacgtt gtcagttctt ttattgttaa gtttatccca attaac
//
LOCUS       DAJVUN010000173         7992 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.173, whole genome shotgun sequence.
ACCESSION   DAJVUN010000173 DAJVUN010000000
VERSION     DAJVUN010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7992
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.173"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            189..1604
                     /gene="tnaA"
                     /locus_tag="OQQ76_003343"
     CDS             189..1604
                     /gene="tnaA"
                     /locus_tag="OQQ76_003343"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709490.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HCS1969719.1"
                     /translation="MENFKHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDRE
                     DVFIDLLTDSGTGAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQG
                     RGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFD
                     TGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK
                     KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM
                     GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYR
                     IAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIR
                     AVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIK
                     GLTFTYEPKVLRHFTAKLKEV"
     gene            1695..2936
                     /gene="tnaB"
                     /locus_tag="OQQ76_003344"
     CDS             1695..2936
                     /gene="tnaB"
                     /locus_tag="OQQ76_003344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity tryptophan permease TnaB"
                     /protein_id="HCS1969720.1"
                     /translation="MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAF
                     ILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTY
                     AYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI
                     ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC
                     YGKRKDKLIKSVVFGSLLVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTK
                     QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPAL
                     LYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVIL
                     FGITVILCWFGNVFNVLPKFG"
     gene            3068..4243
                     /gene="mdtL"
                     /locus_tag="OQQ76_003345"
     CDS             3068..4243
                     /gene="mdtL"
                     /locus_tag="OQQ76_003345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtL"
                     /protein_id="HCS1969721.1"
                     /translation="MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF
                     SVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQG
                     LGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF
                     WAMAMMGIAVLMLSLFILKETRPASPAASDKPRENSESLLNRFFLSRVVITTLSVSVI
                     LTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQV
                     LFLAAGITLAVSPSHTVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIA
                     QVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA"
     gene            4218..5177
                     /gene="yidZ"
                     /locus_tag="OQQ76_003346"
     CDS             4218..5177
                     /gene="yidZ"
                     /locus_tag="OQQ76_003346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator YidZ"
                     /protein_id="HCS1969722.1"
                     /translation="MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA
                     KLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELA
                     AESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
                     ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWAL
                     DNVLQELGRERTIAMSLPEFEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPL
                     PFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA"
     gene            5334..6083
                     /locus_tag="OQQ76_003347"
     CDS             5334..6083
                     /locus_tag="OQQ76_003347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709485.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HCS1969723.1"
                     /translation="MATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRG
                     LLAELMFMLYGIGELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLD
                     MELQRATRGFHSPHAPDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLN
                     DDPRDLQLLPIAGRLKCAHVNHVEALCDAEDVLVWSVAVTPAIEKLSVWELDGKHSWK
                     SLPDIHSRANNPTSRMMRFAQLSTVKSFSPN"
     gene            6105..6671
                     /gene="yieF"
                     /locus_tag="OQQ76_003348"
                     /gene_synonym="chrR"
     CDS             6105..6671
                     /gene="yieF"
                     /locus_tag="OQQ76_003348"
                     /gene_synonym="chrR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I chromate reductase YieF"
                     /protein_id="HCS1969724.1"
                     /translation="MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA
                     DIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLP
                     DQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDRQT
                     GEVIDQGTLDHLTGQLTAFGEFIQRVKI"
     gene            complement(6751..7986)
                     /gene="adeP"
                     /locus_tag="OQQ76_003349"
     CDS             complement(6751..7986)
                     /gene="adeP"
                     /locus_tag="OQQ76_003349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001403836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine permease AdeP"
                     /protein_id="HCS1969725.1"
                     /translation="MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVY
                     IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVV
                     VQAMGLPWQIGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG
                     LKNAGVIVANSETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLG
                     WMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT
                     DKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAV
                     VVGLLFLLVIFLSPLAGMVLGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV
                     MMPFSFSITEGIALRCCLS"
BASE COUNT         1951 a         2009 c         1999 g         2033 t
ORIGIN      
        1 ccgattagat tcaatgtgaa cgattagttt gctatatctt aattttgcct tttgcaaagg
       61 ccatctctcg tttatttact tattttagta aatgatggtg cttgtatata tacatggcga
      121 attaatggat attgcagatg taatattcac agggatcact gtaattaaaa taaatgaagg
      181 attatgtaat ggaaaacttt aaacatctcc ctgaaccgtt ccgcattcgt gttattgagc
      241 cagtaaaacg tactactcgc gcttatcgtg aagaagcaat tattaaatcc ggtatgaacc
      301 cgttcctgct ggatcgcgaa gatgtgttta tcgatttact gaccgacagc ggcaccgggg
      361 cggtaaccca aagtatgcag gcagcgatga tgcgcggcga cgaagcctac agcggcagcc
      421 gcagctacta tgcgttagcc gagtcagtga aaaatatctt tggttatcaa tatactattc
      481 cgactcacca gggccgtggc gcagagcaaa tctatattcc ggtactgatt aaaaaacgcg
      541 agcaggaaaa aggcctggat cgcagcaaaa tggtggcatt ctctaactat ttctttgata
      601 ccacgcaggg ccatagccag attaacggct gtaccgtgcg taacgtctat atcaaagaag
      661 ccttcgatac gggcgtgcgt tacgacttta aaggcaactt tgacctcgaa ggattagaac
      721 gcggtattga agaagttggc ccgaataacg tgccgtatat cgttgcaacc atcaccagta
      781 actctgcagg tggtcagccg gtttcactgg caaacttaaa agcgatgtac agcatcgcga
      841 agaaatacga tattccggtg gtaatggact ccgcacgctt tgctgaaaac gcctatttca
      901 tcaagcagcg tgaagcagaa tacaaagact ggaccatcga gcagatcacc cgcgaaacct
      961 acaaatatgc cgatatgctg gcgatgtccg ccaagaaaga tgcgatggtg ccgatgggcg
     1021 gcttgctgtg catgaaagac gacagcttct ttgatgtgta caccgagtgc agaacccttt
     1081 gcgtggtgca ggaaggcttc ccgacatatg gcggcctgga aggcggcgcg atggagcgtc
     1141 tggcggtagg tctgtatgac ggcatgaatc tcgactggct ggcttatcgt atcgcgcagg
     1201 tacagtatct ggtcgatggt ctggaagaga ttggcgttgt ctgccagcag gcgggcggtc
     1261 acgcggcatt cgttgatgcc ggtaaactgc tgccgcatat cccggcagac cagttcccgg
     1321 cacaggcgct ggcgtgcgag ctgtataaag tcgccggtat ccgtgcggta gaaattggct
     1381 ctttcctgtt aggccgcgat ccgaaaaccg gtaaacaact gccatgcccg gctgaactgc
     1441 tgcgtttaac cattccgcgc gcaacatata ctcaaacaca tatggacttc attattgaag
     1501 cctttaaaca tgtgaaagag aacgcggcga atattaaagg attaaccttt acctacgaac
     1561 caaaagtatt gcgtcacttc accgcaaaac tgaaagaagt ttaattaata ctacagagtg
     1621 gctataagga tgttagccac tctcttaccc tacatcctca ataacaaaaa tagccttcct
     1681 ctaaaggtgg catcatgact gatcaagctg aaaaaaagca ctctgcattt tggggtgtta
     1741 tggttatagc aggtacagta attggtggag gtatgtttgc tttacctgtt gatcttgccg
     1801 gtgcctggtt tttctggggt gcctttatcc ttatcattgc ctggttttca atgcttcatt
     1861 ccgggttatt gttattagaa gcaaatttaa attatcctgt cggctccagt tttaacacca
     1921 tcaccaaaga tttaatcggt aacacctgga acattatcag cggtattacc gttgccttcg
     1981 ttctctatat cctcacttat gcctatatct ctgctaatgg tgcgatcatt agtgaaacga
     2041 tatcaatgaa tttgggctat cacgctaatc cacgtattgt cgggatctgc acagccattt
     2101 tcgttgccag cgtattgtgg ataagttcgt tagccgccag tcgcattacc tcattgttcc
     2161 tcgggctgaa gattatctcc tttgtgatcg tgtttggttc tttcttcttc caggtcgatt
     2221 actccatcct gcgcgatgcc accagcacca ctgcgggaac gtcttacttc ccgtatatct
     2281 ttatggcttt gccggtgtgt ctggcgtcat ttggtttcca cggcaatatt cccagcctga
     2341 ttatttgcta tggaaaacgc aaagataagt taatcaaaag cgtggtattt ggttcgctgc
     2401 tggtgattta tctcttctgg ctctattgca cgatggggaa tattccgcgc gaaagcttta
     2461 aggcgataat ctcctcaggc ggcaacgttg attcgctggt gaaatcgttc ctcggcacca
     2521 aacagcacgg cattatcgag ttttgcctgc tggtgttctc taacttagct gttgccagtt
     2581 cgttctttgg tgtcacgctg gggttgttcg attatctggc ggacctgttt aagattgata
     2641 actcccacgg cgggcgtttc aaaaccgtgc tgttaacctt cctgccacct gcgttgttgt
     2701 atctgatctt cccgaacggc tttatttacg ggatcggcgg tgccgggctg tgcgccacca
     2761 tctgggcggt cattattccc gcagtgcttg caatcaaagc tcgcaagaag tttcccaatc
     2821 agatgttcac ggtctggggc ggcaatctta ttccggcgat tgtcattctc tttggtataa
     2881 ccgtgatttt gtgctggttc ggcaacgtct ttaacgtgtt acctaaattt ggctaaatcc
     2941 ttcaagaagc cagccattcg ctggcttctt gcctctcagg aaatcactta tgtccaaatg
     3001 gcaactcgcc tgatcctcct tcaccacgta tgctttgcgt caccttacta tcaggacgct
     3061 ttagcccatg tcccgctttt tgatttgtag ttttgccctg gttttacttt atcccgccgg
     3121 gattgatatg tacctcgttg gtttaccgcg catcgccgcc gatctcaatg ccagcgaagc
     3181 gcagttgcat attgcgttct ccgtatatct ggcggggatg gcagctgcga tgttatttgc
     3241 cggtaaagtg gccgatcgtt cagggagaaa gccggtcgcc atacccggcg cggcgctatt
     3301 tattattgcc tcggtgttct gttcactggc tgaaaccagc acgttatttc ttgcaggccg
     3361 atttctacag gggttgggcg caggctgttg ttacgtagtg gcgttcgcca ttttgcgcga
     3421 cacgctggat gatcgacgtc gggctaaagt gctgtcatta ctcaacggta ttacctgcat
     3481 cattccggtg ttagcgccag tgctcggaca tctgattatg cttaaattcc cgtggcagag
     3541 tctgttctgg gcgatggcaa tgatgggcat cgcggtactg atgttgtctt tgtttatttt
     3601 aaaagaaacg cgcccagcgt cccccgctgc ttcggacaaa ccacgagaaa atagcgagtc
     3661 gctgcttaat cggtttttcc tcagccgtgt tgttatcacc accctcagcg tttcggtgat
     3721 cctcactttc gtcaatacat cgccggtatt gctgatggaa atcatgggtt ttgagcgcgg
     3781 agaatacgcc accattatgg cgttgaccgc tggcgtcagc atgaccgttt cattctccac
     3841 gccatttgcg ctgggaattt ttaagccacg tacgttgatg atcacctcgc aggtgttatt
     3901 ccttgctgcg gggatcaccc ttgccgtttc accttcccat acggtttctc tgtttggtat
     3961 cacactgatt tgcgccggtt tctcggtagg ttttggcgta gcgatgagtc aggcgttagg
     4021 accattttca ttacgcgcgg gcgtagccag ctcgacctta ggtattgcgc aggtttgcgg
     4081 ttcgtcactg tggatttggc tggcagcggt ggttggtatc ggcgcatgga atatgctgat
     4141 cgggattctg attgcctgta gcatagtgag cctgttgctg attatgttcg tcgcgcctgg
     4201 acgccccgtt gccgctcatg aagaaatcca tcaccacgct tgatctcaat ctgctgctct
     4261 gtctgcaact gctgatgcag gagcgcagcg tgaccaaagc ggcgaagcgg atgaacgtga
     4321 ccccttcagc ggtgagtaag tcgctggcaa agttaagagc gtggtttgac gacccgctct
     4381 ttgtgaactc accgctgggg ctgtcgccca caccgctaat ggtcagcatg gagcaaaatc
     4441 tggcggaatg gatgcaaatg agcaatctgc tgctggataa accgcaccac cagacaccgc
     4501 gcggcctgaa gtttgagttg gcggcggaat cgccgctgat gatgatcatg cttaatgcgc
     4561 tgtcgaaacg gatctaccaa cgttacccgc aggcgaccat caaactacgt aactgggatt
     4621 acgattcctt agatgccatt actcgtggtg aagtggatat tggtttttcc ggtcgcgaaa
     4681 gccatcctcg ctcgcgggag ctgttaagct cgctaccgtt agccattgat tatgaagtgc
     4741 tgtttagtga tgtaccctgc gtctggttac gcaaagatca tccggcactg catgaaacgt
     4801 ggaatctgga caccttttta cgttatccgc atatcagcat ttgctgggaa cagagcgaca
     4861 cctgggcgct ggacaatgtg ttacaggagc tggggcgcga acgcacgatt gctatgagcc
     4921 tgccggaatt tgagcagtca ctgtttatgg cagcgcaacc cgacaatctg ctactggcga
     4981 ccgcgccgcg ctactgtcag tactacaatc aactccatca actgccgttg gttgctcttc
     5041 ctctcccgtt tgacgaaagc cagcaaaaaa agctggaagt tccttttacc ctgctgtggc
     5101 ataaacggaa cagccataat ccgaagatcg tctggttacg ggaaaccatt aaaaaccttt
     5161 acgcgtcgat ggcataaccg aatcgtatga aacgcgaccc aatttcacaa taaaatgtaa
     5221 aaaagttgta ataagcttgt ctgaatcgaa cttttagccg ctttagtctg tccatcattc
     5281 cagtaaatga ttactcttat attcataatg gaccattaag catggagcga aaaatggcga
     5341 ctcactttgc ccgagggatt ttaacggaag gacatctgat ttctgttcgt ctcccctccc
     5401 agtgtcatca agaagcccga aacattcccc ctcatcgtca aagccgtttt ctggcgtcca
     5461 gaggtttact cgcagaactg atgttcatgc tgtatggcat tggcgaattg ccggaaatcg
     5521 tcaccctgcc gaaaggtaaa ccggttttca gtgataaaaa tttgccttcg ttttctattt
     5581 cctatgccgg gaatatggtt ggcgtggcgt taacaaccga aggtgaatgt ggcctcgata
     5641 tggaactaca gcgtgcgacg cgcgggtttc atagcccaca cgcgcccgat aaccacacct
     5701 tttccagcaa tgaatcgcta tggatcagta aacaaaacga tcctaacgaa gcgcgggcgc
     5761 agctcatcac gctgcgccga agcgtgctaa aactaaccgg tgatgttttg aatgacgatc
     5821 cgcgcgatct gcagctgctg cccattgccg gacgcctgaa atgtgctcat gtaaatcatg
     5881 tagaagcgtt atgcgacgcg gaggacgtgc tggtgtggtc cgtggcggtc acgcccgcga
     5941 ttgaaaagct cagtgtctgg gagttagatg gcaaacacag ctggaaaagc ctgccggata
     6001 ttcacagccg cgccaacaat cctaccagcc ggatgatgcg ttttgcccag ctctctaccg
     6061 tgaagtcttt ttcgccaaat tgatagacaa ccacaggagt cattatgtct gaaaaattgc
     6121 aggtggttac gttactgggg agcctgcgca aaggctcatt taatggcatg gttgcacgta
     6181 ccctgccgaa aattgctccg gcgagcatgg aagtcaatgc gttaccttcc attgccgaca
     6241 ttcccctgta tgacgctgac gtacagcagg aagaaggttt tccagcaacg gttgaagctc
     6301 tggcggaaca gatccgtcag gctgacggtg tggtgatcgt cacgccggaa tataactact
     6361 cggtaccggg tgggctgaaa aatgccatcg actggctttc ccgcctgccg gatcaaccgc
     6421 tggccggtaa accggtgttg attcagacca gctcaatggg cgtgattggc ggcgcgcgct
     6481 gtcagtatca cctgcgccag attctggttt tcctcgatgc aatggtgatg aacaagccgg
     6541 aatttatggg cggcgtgatt cagaacaaag ttgatcggca aaccggagaa gtgattgatc
     6601 agggtacgct ggaccacctg accgggcaat tgaccgcatt tggtgagttt attcagcgag
     6661 ttaagatcta aataaaaaac ccgccagtaa tcatgcatgg cgggttttta atgcgctatc
     6721 gattttaatg agcgtcgata aatacaatct tcaggataaa cagcagcgca acgcaatacc
     6781 ttcggtaatc gaaaagctga acggcatcat cacggcggta ataaacgccg gaacagattc
     6841 agtaagatcc tgccagttca cgcgagcaag acttgaggtc atcaacacgc caacgtagat
     6901 caacgcgcca gctgcagcgt agcctagcac cattcccgcc agcggcgaca gaaagataac
     6961 cagcaggaac agcagaccaa caaccactgc cgtcagaccg gtacgaccgc caaccgatac
     7021 gccggaagag gactcaatat aagccgtaac ggaagaagta ccgataaacg aaccggtcac
     7081 ggaagagata ctgtcgacat acagcgcctg cttcatgcgc gggaatttcc ccttctcatc
     7141 cgccagacct gctttatcgg tcacgccaat cagcgtaccg gaggagtcaa acaagttgac
     7201 caacatgaaa gagaaaatca cccctgccag cccgaggtta aacgacccgg ctaaatctac
     7261 atgacccaca actgtcatta cgctcggcgg cgcagaaacg atgccattgt agtgcacatc
     7321 acccagcatc cagcccagca gcgtcgtcac cacgatagaa accagcaccg ctgcgtgaat
     7381 gttgcgcgag gccagaatag caatgatgaa gaagccgagg atacccagaa gtacgctgtg
     7441 agaagtcaga ttaccgatgc tcaccagcgt ttccgagtta gcgacaatca cacctgcgtt
     7501 tttcagcccc atcatgccga taaacaggcc gataccgctg gtaataccca cacgcagact
     7561 taccggaatg ttagcaatca tccagtaacg aacgcggaaa atggtcaaaa gaagcagtcc
     7621 gacagcgccc cagaagattg cgcccatacc gatctgccac ggcagcccca ttgcctggac
     7681 aaccacaaaa gcgaaaaagg cgttaagccc catcgcagga gccagcgcca ccggaaggtt
     7741 tgcaaacaat cccatcataa tgctaccgaa agcagcaatc agacaggttg ttacgaagac
     7801 ggcactggtg tccatgccag caacgcccag aatttgtggg ttaacaaaaa cgatgtaaac
     7861 catcgtcagg aaggtggtaa aaccggcgat cacttcggtc cgtgccgtcg tgccatgttc
     7921 gcgcagttta aacacgcgtt ccagcatccc ctggccagaa gcctgggttg tgtgttgttg
     7981 actcattatc ta
//
LOCUS       DAJVUN010000174         7969 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.174, whole genome shotgun sequence.
ACCESSION   DAJVUN010000174 DAJVUN010000000
VERSION     DAJVUN010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7969
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.174"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(176..907)
                     /gene="dnaQ"
                     /locus_tag="OQQ76_003350"
     CDS             complement(176..907)
                     /gene="dnaQ"
                     /locus_tag="OQQ76_003350"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HCS1969726.1"
                     /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT
                     GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF
                     DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT
                     LHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT
                     DEELAAHEARLDLVEKKGGSCLWRA"
     gene            972..1439
                     /gene="rnhA"
                     /locus_tag="OQQ76_003351"
     CDS             972..1439
                     /gene="rnhA"
                     /locus_tag="OQQ76_003351"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HCS1969727.1"
                     /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTN
                     NRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD
                     LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV"
     gene            complement(1436..2158)
                     /locus_tag="OQQ76_003352"
                     /pseudo
     CDS             complement(1436..2158)
                     /locus_tag="OQQ76_003352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308236.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            2192..2947
                     /gene="gloB"
                     /locus_tag="OQQ76_003353"
     CDS             2192..2947
                     /gene="gloB"
                     /locus_tag="OQQ76_003353"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HCS1969728.1"
                     /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNW
                     QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF
                     SVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLNKLSALSDDTL
                     VCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR
                     TEDIDLINVINEETLLQQPEERFAWLRSKKDRF"
     gene            3019..4377
                     /gene="mltD"
                     /locus_tag="OQQ76_003354"
     CDS             3019..4377
                     /gene="mltD"
                     /locus_tag="OQQ76_003354"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase D"
                     /protein_id="HCS1969729.1"
                     /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA
                     RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM
                     YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY
                     DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF
                     WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD
                     MAGISISKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRDSLASGEIAAVQSTLVAD
                     NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQR
                     LANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMP
                     DS"
     gene            complement(4426..5022)
                     /locus_tag="OQQ76_003355"
                     /pseudo
     CDS             complement(4426..5022)
                     /locus_tag="OQQ76_003355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308233.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(5053..5853)
                     /locus_tag="OQQ76_003356"
     CDS             complement(5053..5853)
                     /locus_tag="OQQ76_003356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HCS1969730.1"
                     /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERI
                     RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
                     LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
                     SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD
                     DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK"
     gene            6094..7008
                     /locus_tag="OQQ76_003357"
     CDS             6094..7008
                     /locus_tag="OQQ76_003357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1969731.1"
                     /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
                     LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP
                     VVLHFLMPLIKPFRERYPEITLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF
                     NSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLNTWPIACSDGQLHEVKYGL
                     SSNSGETLKQLCLSGNGIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDR
                     AVSTRIRAFIDFLSEHVKTAPGGAVREA"
     gene            complement(7005..7808)
                     /gene="dkgB"
                     /locus_tag="OQQ76_003358"
     CDS             complement(7005..7808)
                     /gene="dkgB"
                     /locus_tag="OQQ76_003358"
                     /EC_number="1.1.1.346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgB"
                     /protein_id="HCS1969732.1"
                     /translation="MAIPAFGLGTFRLKDDVVISSVKTALELGYRAIDTAQIYDNEAA
                     VGQAIAESGVSRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPN
                     DEVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQ
                     NRKVVAWAKQHGIHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSV
                     IPSSTKRKNLESNLKAQNLQLDAEDKKAIAALDCNDRLVSPEGLAPEWD"
BASE COUNT         2123 a         1912 c         1936 g         1998 t
ORIGIN      
        1 ctgcgtgaca ggcaggtatt ctaaccgact gaactaccgc tccgcgttgt gttccgttgg
       61 taacgaggcg aatattacgg attgcctcac ccttcgtcaa cggtttttct catcttttga
      121 atcgtttgct gcaaaaatcg cccaagccgc tatttttagc gccttttaca ggtatttatg
      181 cccgccagag gcagcttccg cccttcttct ccaccagatc aagacgggct tcatgagctg
      241 caagctcttc atctgtcgca aaaacaacgc gtaacttact tgcctgacgt acaatgcgct
      301 gaattgttgc ttcaccttgt tgctgctgtg tctctccttc catcgcaaaa gccatcgacg
      361 tttgaccacc ggtcatcgcc agataaactt ccgcaaggat ctgtgcatcg agtaatgccc
      421 cgtgtagcgt tcgtttactg ttatctattt cgtagcgggc acataacgca tcgaggctgt
      481 tgcgcttacc aggaaacatt ttcctcgcca ccgcaaggct atcggtgacc ttacagaagg
      541 tattggtctt cggaatatcg cgcttaagca acgaaaactc gtagtccata aagccgatat
      601 cgaacgctgc gttatggatc accaactccg cgccgcggat atagtccatg aactcatcgg
      661 ctacttcggc aaacgtgggc ttatcgagca aaaattcatc ggcaatacca tgtacgccaa
      721 aggcttccgg atccaccagc cgatcgggtt tgagataaac atggaagtta ttgcccgtca
      781 ggcgacggtt caccacttca acggcaccaa tctcaatgat cttgtggcct tcatagtgcg
      841 caccaatctg gttcataccg gtggtttcgg tatcgagaac gatctggcgt gtaattgcag
      901 tgctcatagc ggtcatttat gtcagactta tcgttttaca gttcgattca attacaggaa
      961 gtctaccaga gatgcttaaa caggtagaaa ttttcaccga tggttcgtgt ctgggcaatc
     1021 caggacctgg gggttacggc gctattttac gctatcgcgg acgcgagaaa acctttagcg
     1081 caggctacac ccgcaccacc aacaaccgta tggagttgat ggccgctatt gtcgcgctgg
     1141 aggcgttaaa agaacattgc gaagtcattt tgagtaccga cagccagtat gtccgccagg
     1201 gtatcaccca gtggatccat aactggaaaa aacgtggctg gaaaaccgca gacaaaaaac
     1261 cagtaaaaaa tgtcgatctc tggcaacgtc ttgatgctgc cctagggcaa catcaaatca
     1321 aatgggaatg ggttaaaggc catgccggac acccggaaaa cgaacgctgt gatgaactgg
     1381 ctcgtgctgc ggcaatgaat cccacactgg aagatacggg ctaccaagtc gaagtttaag
     1441 cttgtggttt acgacattgc cgggtggctc caaccgcttg gcgaattcgt ggcttgtttt
     1501 tactctgttt catcgggttt agcgttaaag gaatagtccg tttccgggca acaataagtt
     1561 gtaagcaacc aagcgcagga atatgcgcat tcaatagttt tcctccgtgt ttgttccacg
     1621 ggagaacgtg gaaacggctg gcgtgcagca cttcaaaatt caacaaagag agtcagtcca
     1681 gttgccgcat cagagtaaac atccggctgt tatagggcga ggtttttcgc aataccggca
     1741 caagtttgcg taatcccatt aaactaatgg gattgaagcc actaatcacc agccagccat
     1801 catcaatcaa tacccgatcg gtttcacgca ataaacgatg cggatcggtg caccacggca
     1861 atgtatgtgc cagtagacaa acatcaacgg atttatcggc aaaaggaaga tgaagtggat
     1921 ccgcctgcac ctggacgggc attccttgcg cagaaacatt cacttgatga gaaaccgcgc
     1981 acgcttcgca attgatttct gcgcttaaat tgccaatctt aagcagatga aaaccataca
     2041 ttttagtgaa ccacgggttg agctggcgct ccagcgcctt gcgataaagc tctccccagg
     2101 gcaaatcgcc ccagcgatca ggagccacga cagtttgagg gactcttgcc ggtttcatca
     2161 caaccttccg tttcacacta agaggtaatc tatgaatctt aacagtattc ccgcctttga
     2221 tgacaattac atctgggttt tgaatgatga agcaggtcgc tgcctgattg tcgatcccgg
     2281 agacgcagag ccagtattaa acgccattgc cgccaataac tggcaaccgg aggccatatt
     2341 tctcacccac catcatcacg atcacgttgg cggcgtaaaa gaactggtgg aaaagtttcc
     2401 gcaaattgtg gtgtatggtc cacaagagac acaagataag ggaacaacac aggtagtcaa
     2461 agatggcgaa actgccttcg ttttggggca tgaatttagt gtaattgcca caccgggtca
     2521 cactttagga catatctgtt acttcagtaa accttatcta ttttgcggcg acacgctgtt
     2581 ttctggtggg tgtggtaggt tgtttgaagg gacagcatca caaatgtatc aatcacttaa
     2641 taagttaagt gcgttatctg acgatacatt ggtatgttgt gctcatgaat atacgttatc
     2701 aaatatgaag tttgctttga gtattcttcc gcacgatttg tccataaatg attattatcg
     2761 taaagttaag gagttacggg caaaaaatca aataacacta cccgtaattc tgaaaaatga
     2821 gcggcaaatt aatgtttttt taagaacgga agatattgat ttaattaatg taattaatga
     2881 agaaacatta ttgcaacaac ctgaagagcg ttttgcatgg ttaaggtcaa agaaagatag
     2941 gttctgataa aactttcttg tcatcggctc cgttcgccgt tatgatcggt cgtcttttaa
     3001 gcaactattg acacacacat gaaggcaaaa gcgatattac tcgcctctgt cctgctcgtg
     3061 ggttgccaga gtaccggcaa cgttcaacag cacgcacaga gcctttctgc agctggtcaa
     3121 ggggaagcag caaagtttac aagtcaggca cgatggatgg acgatgggac gtctatcgcg
     3181 ccagatggtg acttgtgggc tttcattggc gacgagctaa agatgggaat tccggaaaat
     3241 gaccggattc gcgaacagaa acagaaatat ttacgcaata agagctatct ccacgatgta
     3301 actttacggg cagagccgta tatgtactgg atagcagggc aagttaaaaa acgtaacatg
     3361 cctatggaac tggtactact acccatagtg gagagcgctt ttgatcctca cgcaacgtct
     3421 ggcgccaatg ccgcaggcat ctggcagatc attccgagca cggggcgcaa ttatggtttg
     3481 aaacagaccc gcaattatga cgcgcgtcgc gatgttgttg cttcaacaac tgccgcgctg
     3541 aacatgatgc agcgtctgaa caagatgttt gacggcgact ggcttctgac cgtagcggct
     3601 tataacagcg gcgaaggtcg ggtcatgaag gcaattaaaa cgaacaaagc gcgtgggaaa
     3661 tccacggact tctggtcgtt accgttgccg caggaaacga agcagtacgt gcctaaaatg
     3721 ctggcattga gtgatattct caaaaacagc aagcgttatg gcgtacgtct gccaacgacc
     3781 gatgaaagcc gtgctctggc gcgtgtgcac ctgagcagcc cggttgaaat ggcgaaggtt
     3841 gcagatatgg cggggatttc catcagcaag ctgaagacat tcaacgctgg cgtaaaaggc
     3901 tccacgctgg gcgcaagtgg cccgcagtac gtgatggtgc caaagaagca tgcagatcaa
     3961 ctgcgtgatt ctctcgcttc aggcgaaatt gctgctgtac agtcgacgct ggttgccgac
     4021 aatacgccgc ttaacagccg tgtttacacc gtacgctctg gcgacacgct ttcaagcatc
     4081 gcttcacgtc tcggcgtaag caccaaagat ttgcagcagt ggaacaaact gcgcggatct
     4141 aagctgaagc caggccaaag tttgacgatt ggtgcaggca gtagcgcaca gcggttggca
     4201 aacaacagcg atagcattac gtatcgtgtg cgcaaaggcg attcgctttc aagcattgct
     4261 aaacgccacg gcgtgaacat caaagatgtg atgcgctgga acagcgacac tgcgaatctg
     4321 caaccaggcg ataagctgac gttgtttgtg aaaaacaaca acatgccaga ttcctgacaa
     4381 accagataat aaaaaaggca ccgattcccc cggtgccttt tttatttatg ccgctttatg
     4441 tgcttctacc atgatgatat cactggtgaa agagccatca gtctgcaagg aaaaatacgt
     4501 tctcacctct gtcgatgcgc tctgttggta aatgcgaata gcgtctacta acgcttctgg
     4561 cgtacgcatt ctcacgaccc atgaagaaaa ttccagcggt aacttatctg taattaaatt
     4621 atcaactatc agattggctt cattgattaa cgtcaaccac gcaccgctgg cgtagtttcg
     4681 tacgtgagag gtatcgcgta atgcttctac cgcctgtaac cagatgtcgc gcgctgggtg
     4741 acccggagac attacatcca tcacaatcag cctaccgcca ggtttcaata tcctattcac
     4801 ttctcgcagt gctgcaccaa catcatgcca gtgatgggca gaataacggc tgataacaat
     4861 atcaaatgcg ttatcggcaa atggcagact tgcggcatat ccctggcggg tggtgatatt
     4921 tttcagttgc cgggcttcgg cagcttgtgc cacgacatcc agcatgtggg ccgataagtc
     4981 atacgccacc accgcgctca cgttttgcgc agcgccaaac gttggtctgc cctgtggcag
     5041 acctgacata ccttatttat caggcttgcc gggactgaat tcaacgagta gcggattgtg
     5101 atcggaagcg cgcgtaacca gtacagaagc ttcactgacg ttcagaccac ggtagaaaac
     5161 aaaatcgagc gggcgaccaa acgcccgacg gcgctgatca tcggtaaaac gcacctggcg
     5221 cagcgacatt tcccgcgcaa agcgatataa cgcgttcatc cttctacggc tccaggcatt
     5281 gaaatctccc gccataatga ccgggccgct gtggtgagct atctgatcac caataggaag
     5341 taactgctta ctatagacat ccacgcccag actgaagttg acggcgtgta tattaaccac
     5401 catcaacagg cgggtgtcag gtaatggata gaccgtcacc agtgccgact tcgccagacg
     5461 caaaatgggt tctcgttcac gtaacgggca gcaatacact ggatgtgccg ccgaaagggt
     5521 cattacgcca gaaggatgtt gtggcagcac gaaagcgggt acctgatcgg cggcaagata
     5581 gttagcggtc gcaaactgta ctaactctgg cgttgtctgc gcttcctgca ataacaccag
     5641 atgtgcatct ttgccgtagt tctttaatac cgacaaccat tcagcgcgtt gctgtttgta
     5701 tatgttccac accaggatcc gaatacgctc ttcggtactt aacggttccc caggtggtaa
     5761 tgcctggccg atgctcgcaa aagaccccgg cggtaagatc ctttccgcag gttgtccggc
     5821 aacatagcgc atggcatagg tgttttttcg cacttttgac tttgaaacct ctattacgtc
     5881 aacccttccg cactcgggag ggttctacta ttatagggat tttagctcac tctttcaacg
     5941 agcaattgta tattgttatg taagcaagtg cttacaccgg tcagaatttt gctcattatg
     6001 gagaacatta aatcgcatga catatcacgc atcctgatgg tttaatgaca aataaattca
     6061 aaatatctct tctattttgc aacaggagca aaaatgaaag ccacgtcgga agaactcgcc
     6121 atttttgttt cggtcgtcga aagcggcagc tttagccggg cagcggaaca attagggcaa
     6181 gcaaactcag cggtaagccg ggcggtgaaa aagctggaga tgaaacttgg cgttagcctg
     6241 cttaatcgga ccacgcgaca acttagcctg acggaagaag gcgagcgtta ttttcgtcgc
     6301 gtacagtcaa ttttgcagga gatggcagcg gcagaatcag aaattatgga gacgcgtaat
     6361 acaccgcgtg gactgttacg gatcgatgcc gcaactccag tggtgctgca ctttctgatg
     6421 ccgttaatta agcctttccg tgaacgctat ccggaaatca ctttgtcgct agtctcctcc
     6481 gaaacgatta ttaatttgat cgaaagaaaa gtggatgtcg cgatacgcgc tggtacgtta
     6541 acggattcca gcttacgtgc taggccgtta tttaacagtt atcgaaaaat tatcgcctcc
     6601 cccgattata tttcccgcta cgggaagcca gaaacgatcg acgatttaaa gcaacatgtt
     6661 tgcctgggat tcactgaacc cgcttccctc aatacctggc cgatagcctg tagtgatgga
     6721 caattacatg aggtgaaata cggtttgtca tccaatagtg gggaaacact gaaacagctt
     6781 tgcctgagtg gcaacgggat tgcgtgtttg tccgactaca tgatcgacag agaaatcgct
     6841 cgcggagaat tggtggagtt aatggcagat aaagtgttgc cagtggaaat gccattcagt
     6901 gccgtctatt acagcgaccg tgcggtaagt acgcgcatcc gggcttttat cgatttcctt
     6961 agcgagcatg taaaaacagc tcccggagga gctgtcagag aggcttaatc ccattcagga
     7021 gccagacctt ccgggctaac caggcggtcg ttgcaatcca gtgcggcgat cgctttttta
     7081 tcttcggcat caagctgtaa attttgtgcc ttaagattac tttccaggtt tttacgttta
     7141 gtagaagaag gaattactga gtaaccttcc cccatagccc acgccagaat cacttgtgcc
     7201 ggagtcgcat tgtgtttagc tgcgatacga gcaataacct catctttcag ggccttacca
     7261 tacgccagcg tcatatagga agtaatatgg atgccgtgct gtttagccca ggcaaccact
     7321 ttacggtttt gcagataagg agagagttca atctggttag tagcgatgtt ttcagcgcca
     7381 acagcagcaa tcgccttttc catcaatggg atcgtgaagt tggaaatacc gatctcacgc
     7441 gtcagccctt gttttttggc ttccagcagc gcctgcataa actcttcaac agagacttca
     7501 tcgtttggtg acggccagtg gattagcgtc agatcaacat aatcggtacg caatttttgc
     7561 aggctctctt tcagacttgg gatcaatttg tctttgctga gattttcaat ccagatttta
     7621 gtggtgatgt agagttcatg acgtgacacg ccactttctg caatcgcctg acctactgcg
     7681 gcttcgttat catagatttg tgcggtatca attgcgcgat aaccaagttc aagcgccgtt
     7741 ttcacagatg aaataacaac gtcgtctttc agacggaaag tacctaaacc aaatgcaggg
     7801 atagccataa tatgcctctt ttaatgctat tttcgttaac tgaggtgatt atgggcttca
     7861 gactgttgag gaaaaaaaag cgtaaaatgc agaggatttt tgcgattctg gcaataatag
     7921 atatacagac gaaaaaaaac ctcgagcgtt aactcgaggc ttcttaata
//
LOCUS       DAJVUN010000175         7906 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.175, whole genome shotgun sequence.
ACCESSION   DAJVUN010000175 DAJVUN010000000
VERSION     DAJVUN010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7906
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.175"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..190
                     /locus_tag="OQQ76_003359"
                     /pseudo
     CDS             1..190
                     /locus_tag="OQQ76_003359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001402762.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            413..910
                     /gene="ubiC"
                     /locus_tag="OQQ76_003360"
     CDS             413..910
                     /gene="ubiC"
                     /locus_tag="OQQ76_003360"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709881.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HCS1969733.1"
                     /translation="MSHPALTQLRALRYFKEIPALDPQLLDWLLLEDSMTKRFEQQGK
                     TVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSG
                     PELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLP
                     ASPLY"
     gene            923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ76_003361"
     CDS             923..1795
                     /gene="ubiA"
                     /locus_tag="OQQ76_003361"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HCS1969734.1"
                     /translation="MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVP
                     QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVV
                     LVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA
                     VSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGIL
                     QIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVG
                     LVLFLGLAMSYWHF"
     gene            complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ76_003362"
     CDS             complement(1950..4373)
                     /gene="plsB"
                     /locus_tag="OQQ76_003362"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HCS1969735.1"
                     /translation="MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYV
                     LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGMLLPRYVFIHGGPRVFTYYTPKEESI
                     KLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG
                     RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFN
                     KLLASRAIAKAVEDEAHSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN
                     RLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN
                     LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG
                     RLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLP
                     QMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNI
                     AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDST
                     VPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMA
                     AIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQ
                     DDELHINPSHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLS
                     VLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLT
                     IESATQGEG"
     gene            4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ76_003363"
     CDS             4544..4912
                     /gene="dgkA"
                     /locus_tag="OQQ76_003363"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HCS1969736.1"
                     /translation="MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVV
                     IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV
                     LIAIIVAVITWCILLWSHFG"
     gene            5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ76_003364"
     CDS             5022..5630
                     /gene="lexA"
                     /locus_tag="OQQ76_003364"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HCS1969737.1"
                     /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE
                     EHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDP
                     SLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
                     QGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL"
     gene            5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ76_003365"
     CDS             5703..7028
                     /gene="dinF"
                     /locus_tag="OQQ76_003365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter DinF"
                     /protein_id="HCS1969738.1"
                     /translation="MAFLTSSDKALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVY
                     LGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQALARALVQPLLLALGAGAL
                     IALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA
                     PVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKILKLRGI
                     SGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTL
                     LTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSVVYLLAGE
                     HIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATHAAEMRNSMAVAAA
                     GFALTLLTLPWLGNHALWLALTVFLALRGLSLAAIWRRHWRNGTWFAAT"
     gene            7144..7353
                     /locus_tag="OQQ76_003366"
     CDS             7144..7353
                     /locus_tag="OQQ76_003366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HCS1969739.1"
                     /translation="MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQ
                     ERYGYQKDQAEKEVVDWETRNEYRW"
     gene            complement(7395..>7906)
                     /gene="zur"
                     /locus_tag="OQQ76_003367"
     CDS             complement(7395..>7906)
                     /gene="zur"
                     /locus_tag="OQQ76_003367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc uptake transcriptional repressor Zur"
                     /protein_id="HCS1969740.1"
                     /translation="KTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYD
                     LLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQSTHTSAMFICD
                     RCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQHDH
                     SVQVKKKPR"
BASE COUNT         1782 a         1943 c         2178 g         2003 t
ORIGIN      
        1 tgatatgttg aatcctacaa aagataccaa ttggaattcc acgtgtatct ataaatcctg
       61 acataagatg ttgcctgtta atcttactca ggaaacactt ttcaactcca aatctcagga
      121 taaacatgcg cttttcccca tttttactgc gagttggcga gcttatcgta taatgaataa
      181 gggtgcttaa gtaaaggaaa acatcaccgt tcctggcatc ctgggcggtg atgcccctat
      241 ggttgccctc gccagcgcgg gcatcggcaa agcgtaaggt tcaaaagcga tttaccactt
      301 catgcgattg ttgcgttttt gttgcgcatt agatcactta atttgcttta catctcccgt
      361 aaacactttt ctgcgataca atgcctttac gttatgtaac ggagagttcg gcatgtcaca
      421 ccccgcgtta acgcaactgc gtgcgctgcg ctattttaaa gagatccctg ccctggatcc
      481 gcaactgctc gactggctgt tgctggagga ttccatgaca aaacgttttg aacagcaggg
      541 aaaaacggta agcgtgacga tgatccgcga agggtttgtc gagcagaatg aaatccccga
      601 agaactgccg ctgctgccga aagagtctcg ttactggtta cgtgaaattt tgttatgtgc
      661 cgatggtgaa ccgtggcttg ccggtcgtac cgtcgttcct gtgtcaacgt taagcgggcc
      721 ggagctggcg ttacaaaaat tgggtaaaac gccgttagga cgctatctgt tcacatcatc
      781 gacattaacc cgggacttta ttgagatagg ccgtgatgcc gggctgtggg ggcgacgttc
      841 ccgcctgcga ttaagcggta aaccgctgtt gttaacagaa ctgtttttac cggcgtcacc
      901 gttgtactaa gaggaaaaaa atatggagtg gagtctgacg cagaataagc tgctggcgtt
      961 tcatcgctta atgcgtacgg ataagccaat tggcgcgtta ctgctgctct ggccaacatt
     1021 atgggcgttg tgggtggcga caccgggcgt tcctcagctc tggatcctgg cggtatttgt
     1081 cgcgggtgtc tggctgatgc gcgctgccgg atgtgtggtg aatgattatg ctgaccgaaa
     1141 gtttgatggt catgttaagc gcacggcgaa ccgaccactt cccagcggcg cggtaacaga
     1201 gaaagaggcg cgcgcgctgt ttgtagtgct ggtactgatt tcgtttttac tggtactgac
     1261 gctgaatacg atgaccattc tgttgtcgat tgccgctctg gcgttggcgt gggtgtaccc
     1321 gtttatgaag cggtataccc atctcccgca agtggtgctg ggcgcggcgt ttggctggtc
     1381 gattccaatg gcttttgccg ctgtgagtga gtcggtgcca ttgagttgct ggttaatgtt
     1441 cctcgccaat attctctggg cggtggctta cgacacgcag tatgcgatgg ttgaccgcga
     1501 tgatgatgtg aagattggca ttaaatccac ggcaatcctg ttcggccaat acgataaatt
     1561 gattattggt attttgcaga ttggcgtact ggcactgatg gcgatcatcg gtgagttaaa
     1621 tggcttaggc tggggatatt actggtcaat tctggtggct ggcgcgctgt ttgtttatca
     1681 acaaaaactg attgccaacc gcgagcgtga agcctgcttt aaagcattta tgaataataa
     1741 ctatgttggt ctggtactat ttttagggct ggcaatgagt tactggcatt tctgatgatg
     1801 taaaaaagcc ggatgatcat ccggctttct tctgggttgc ctgatgcgcg gcgcttctca
     1861 ggcctacaca acacatcgca atttattgaa tttgcagatt atggaatgcc ggataaggcg
     1921 ttttcgccgc atccggcaat tctctctggt tacccttcgc cctgcgtcgc actctcaatc
     1981 gtcaaacgca cgtctgatgt aatcaactcc gccagcaact gataaacctt catcgtttct
     2041 gccggttcgg catcgccgct atcgctgata tacccttcat cacgcagcgt cagcaccaga
     2101 gaactgaaca ccgccttgtc gaagaactcc ggcgcgttga taccgtgcag cacggagaga
     2161 cgttgcgcga cggtgcggct ctctttctcc agcgtaccgc ggttgatcga cgggttagcg
     2221 ctcaacagcc agaaggtgat ggcataacgt tgcagcgttt cgcgcgcgcc tgcggccagc
     2281 agctgtagcg tgcgagaatg cgacgggttg atatgcaact catcatcttg cagggtaatc
     2341 agcccctgac gttgcatctc atttgccaac gcatcaataa cgtccggcaa ctcgtcgcga
     2401 tcccagcgca ggaacagctc cgctttcagc attgggtaaa gcacattgac gtgctccatc
     2461 aatacgtcgc gggagatgtg gcgatgctgg gtgacaattg ccgccatcag cgaaggcagc
     2521 accaacatat gcgcaatgtt gttgcgatag taggtcatca gcaccgcttg ctcgcgcggc
     2581 agaatgatga tgtcgccgat agtgtctttc tcaacttcaa acttgttcat ttgcagcgcg
     2641 tgatcgataa gctcgctggc gctggctgaa ggaacggtag agtccgtgga gtaaggtacg
     2701 ttgcgcatca gatccaggta gcagttgagt tgctcggtta actgctcgcg ggtaagtgag
     2761 cgctgacgtg atgccagtag cgcggtacag cagaggttca tggcgtttgc cgcgcctgcg
     2821 ttgttaatgc gtaccatcag atcggcagca atattattga ccgtcggcgt taaccatgcc
     2881 ggacgcaccg cttcgatggg atcgatagat tcacgccagt caggtacatg ctggttaagg
     2941 taggtcatca acggcattgg ttcaccgaag ttgacgtaac cctgaccgag attacgcagc
     3001 ttgcttaaac cgcgcagcat ctgcggcagg ctctctttct ctttcgtcgc accgcgcagt
     3061 tctttggcgt aagtccccac ttccatgacg tgctcataac cgatatagat cggaatcagc
     3121 gtaatcggac gcgtgccgcc acgcagcatc gcctgaatgg tcatcgacag cgtaccggtt
     3181 ttcggatcca gcaaacgccc cgtacgggaa cgaccgcctt ccacgaaata ctcgacggaa
     3241 taaccacggc tgaacagttc gccgagatac tcacggaaaa cggtggaata aagtttattg
     3301 cctttaaacg tacggcgaat aaagaacgcc cccagacggc ggaaaatcgg cccggccggc
     3361 cagaaattca ggttgatccc ggcggcgata tgcggcggca cgagcccctg gtggtacagc
     3421 acgtaagaaa gtagcaggta gtccatgtga ctgcggtggc aaggcacata caccagctca
     3481 tgaccgtcgt gggccagctg gcgaacgcgc tcggcgttat ggacgttgat gccctgataa
     3541 agtcggttcc aggtgaagcc cagaatgcgg tcagtcaggc ggatcatctc gtaagagaaa
     3601 ttcgccgcaa tctcttccat cagcgcaatc gcgttctgct gcgctttttc atgggagatt
     3661 tttttgctgt gcgcttcatc ttctaccgct ttggcaatgg cgcgggaggc gagcagctta
     3721 ttaaacagat cctgacgagc aggcagacgt gggcccacag cagccagacg ttgacgggca
     3781 aagtgcatac gcgccacgcg cgccagtttc tgtgcgatag ttttatccgt gccgtgttca
     3841 tccgccatac ggcgcagcga aactgacggc gagaaacgca caaaactgtc gcgaccgagc
     3901 cacagtacgg cgaaaaattt ctgtacgccg ttaagcatac gcagcggcgg gtttacttcg
     3961 cctttttcac gccccggcgc gcgaccaaac atcaccgata ctggcaccat ctgcacatcc
     4021 agatttgggt tgctacggtg caaatcgaga tagtcgtgga acagcttaat agactcttct
     4081 ttcggcgtgt aataggtgaa tacacgcggc ccgccgtgaa tgaacacata gcgcggcagt
     4141 agcatgccgt cgatttccag cggctctaac gggtcaggca agtcatgagc cagacactgg
     4201 gcgcgtaacg tcagcaaatc tgctttcgag ttgtacggta aaacgtacat aattggacga
     4261 gaggtatcca gccccagttc cggggcagga tctgccggaa tagacttgct ttttaccagg
     4321 atgcttaatg gtaaattcag taatttgtag taaattcgtg gccagccgga cataaacgat
     4381 gtaaagcctc tggttaataa tgcaaatgcg cggcaaggat agcagaaagt catgggaaat
     4441 tctgtggtat ccgctcatgt ttcgcgcggc gttacgcaaa cccgaatcat cggatttaac
     4501 ggtacactga tattgacgct cataatgtaa aaaggttctt tcaatggcca ataataccac
     4561 tggattcacc cgaattatca aagctgctgg ctattcctgg aaaggtttac gcgctgcatg
     4621 gatcaacgaa gcggcattcc gtcaggaagg cgtagcggta ttgttggcgg tggtcatcgc
     4681 ctgctggctg gatgtggacg caattacccg cgtgctgctt atcagctccg tgatgctggt
     4741 gatgattgtg gaaatcctca atagcgccat cgaagcagtg gttgaccgaa ttggctctga
     4801 ataccatgag ctttccggac gcgcaaaaga tatgggatcc gccgcggtgc tgattgcgat
     4861 tatcgtcgcc gtgataacct ggtgcatcct gttatggtcg cattttggat aacccttcca
     4921 gaattcgata aatctctggt ttattgtgca gtttatggtt ccaaaatcgc cttttgctgt
     4981 atatactcac agtatgactg tatatacacc cagggggcgg aatgaaagcg ttaacggcca
     5041 ggcaacaaga ggtgtttgat ctcatccgtg atcacatcag ccagacaggt atgccgccga
     5101 cgcgtgcgga aatcgcgcag cgtttggggt tccgttcccc aaacgcggct gaagaacatc
     5161 tgaaggcgct ggcacgcaaa ggagttattg aaattgtttc cggcgcatca cgcgggattc
     5221 gtctgttgca ggaagaggaa gaagggttgc cgctggtagg tcgtgtggct gccggtgaac
     5281 cgcttctggc gcagcagcat attgaaggtc attatcaggt cgatccttcc ttgttcaagc
     5341 cgaatgctga tttcctgctg cgcgtcagcg ggatgtcgat gaaagatatt ggcattatgg
     5401 atggcgactt gctggcagtg cataaaactc aggatgtacg taacggtcag gtcgttgtcg
     5461 cacgtattga tgacgaagtt accgttaagc gcctgaaaaa acagggcaat aaagtcgaac
     5521 tgttgccaga aaatagcgag tttaaaccaa ttgtcgttga ccttcgtcag cagagcttca
     5581 ccattgaagg gctggcggtt ggagttattc gcaacggcga ctggctgtaa catatctctg
     5641 agaccgcgat gccgccaggc gtcgcggttt gtttttcatc tctcttcatc aggcttgtct
     5701 gcatggcatt cctcacttca tctgataaag cactctggca tctcgcctta cccatgattt
     5761 tctccaatat caccgttccg ttgctgggac tggtcgatac ggcggtaatt ggtcatcttg
     5821 atagtccagt ttatttgggc ggcgtggcgg ttggtgcaac ggcgaccagc tttctcttta
     5881 tgctgttgct gtttttacgc atgagcacca ccgggctgac tgcgcaggct tatggtgcca
     5941 aaaatcctca ggcattagcc cgtgcgctgg tgcaaccgtt gctgttggcg ttgggggcag
     6001 gggcgttaat tgcgctgctg cgtacaccga ttatcgatct ggcactgcat attgttggcg
     6061 gtagtgaagc agtcctggaa caggcgcggc gctttcttga aatccgctgg ttaagcgcac
     6121 cggcgtcgct ggcgaatctg gtattacttg gttggttact cggcgtgcaa tatgcccgtg
     6181 cgccagtaat tttgttagtg gtcggcaata tcctcaacat tgtgctggat gtctggctgg
     6241 tgatggggct gcatatgaac gtgcagggcg cggcgctggc gacggttatt gcggaatatg
     6301 caacattgct gattggtctg ctaatggtgc gtaaaatcct caaactacgc ggaatttccg
     6361 gcgaaatgct gaaaactgcc tggcgaggaa acttccgtcg cttgctggcg cttaaccgcg
     6421 atatcatgct gcgttcgctg ttgttgcaac tctgtttcgg cgcgatcacc gtacttggtg
     6481 cgcgactggg gagtgacatt atcgctgtta acgcggttct gatgacgcta ctcaccttta
     6541 ccgcctatgc gctggatggt tttgcctacg cggttgaagc gcattccggt caggcgtacg
     6601 gtgcgcgcga cggtagccag ttgctggatg tctggcgggc agcgtgccgc cagtcgggga
     6661 tcgtagcgtt actgttttcg gtagtttatt tgctggcagg ggaacacatc attgcgttgc
     6721 tgacgtcgtt aacccagatt cagcagctgg ccgaccgcta tcttatctgg caggtgattt
     6781 tgccgttggt tggcgtctgg tgttatctgc tggacggcat gtttataggc gcaacgcacg
     6841 cagccgaaat gcgtaacagt atggcggtgg ccgccgcagg ttttgcgttg acgctcctta
     6901 cgctgccgtg gctgggtaat catgctttgt ggctggcgtt aaccgtcttt ctggcgttgc
     6961 gcgggctttc tctggcggct atctggcggc gtcactggcg caacggtacc tggtttgccg
     7021 caacgtgacg gttaaaaatt ctgaataaat aatcctaagc caaattgctg actacactta
     7081 atctcacgtt cagaagaaaa gtgaacgtac tctcattcac aacctaacga tgaggtcttg
     7141 attatgaata aagatgaagc cggcggtaac tggaaacagt ttaaaggtaa agtgaaagag
     7201 caatggggca aactgaccga tgatgatatg acgatcattg aaggtaaacg tgatcaactg
     7261 gtcggtaaaa tccaggaacg ttatggttat cagaaagatc aggcagaaaa agaggtcgtg
     7321 gattgggaaa cccgcaatga atatcgctgg taattaatcc ctcctgcccg acgtgtacaa
     7381 ggatgtacgc cctcttaacg cggtttcttt ttcacctgca cagagtgatc atgctggcac
     7441 tgttcaggat gacgacacgc ttccacttcc acgcatgccg cacagagccc atgtgcttca
     7501 atcacattat gccgcagggc aaaccccatt tttgccgcca gcgtatgcat gatgtcttcc
     7561 acgccttctg cacactcttc tttcactgcg ccgcagcgat cgcaaataaa catggctgaa
     7621 gtatgggtgg actggtcgaa cagatgacag agcacataac tgttggtgga ttccacctta
     7681 tgcacaaaac cttgctcaag cagaaaatcc agcgcgcgat aaaccgttgg cggcttggct
     7741 tgcggttcag cttcgcgcag taaatcaagc agatcataag cgctgatagc gccatcctgc
     7801 agactcatca ggcgcaacac ttccaggcgc tgtggggtca ggcgcacatt acgctgcgcg
     7861 cagatttttt cagcctgcgc taataactcc tgcgttgtgg tctttt
//
LOCUS       DAJVUN010000176         7868 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.176, whole genome shotgun sequence.
ACCESSION   DAJVUN010000176 DAJVUN010000000
VERSION     DAJVUN010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7868
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.176"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            143..1741
                     /gene="rtcR"
                     /locus_tag="OQQ76_003368"
     CDS             143..1741
                     /gene="rtcR"
                     /locus_tag="OQQ76_003368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator RtcR"
                     /protein_id="HCS1969741.1"
                     /translation="MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRL
                     ELLHDARSCSLFETLKRDIASVSPETEVVSIEIELHNPWDFEEVYACLHDFARGYKFQ
                     PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQTSPPRKKEQPRGAGEVTIIDLD
                     LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG
                     AGKSFLARRIFELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG
                     LLRSANGGMLFFDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL
                     RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHATLTGDSVRFNSE
                     ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES
                     RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA
                     DRLRKYLARFGLTWEAVQDQHSSS"
     gene            complement(1723..2481)
                     /locus_tag="OQQ76_003369"
     CDS             complement(1723..2481)
                     /locus_tag="OQQ76_003369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HCS1969742.1"
                     /translation="MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELA
                     EQNLILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTT
                     PEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFI
                     SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN
                     MGSISMVDAVYTDAPPPVSVMQVLTDHHIQLELC"
     gene            complement(2498..3328)
                     /gene="glpG"
                     /locus_tag="OQQ76_003370"
     CDS             complement(2498..3328)
                     /gene="glpG"
                     /locus_tag="OQQ76_003370"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease
                     GlpG"
                     /protein_id="HCS1969743.1"
                     /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQ
                     AERVRAELARFLENPADPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVVMI
                     ACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWY
                     LGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD
                     PQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK
                     "
     gene            complement(3373..3699)
                     /gene="glpE"
                     /locus_tag="OQQ76_003371"
     CDS             complement(3373..3699)
                     /gene="glpE"
                     /locus_tag="OQQ76_003371"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HCS1969744.1"
                     /translation="MDLFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT
                     NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA
                     EVAYGA"
     gene            3889..5394
                     /gene="glpD"
                     /locus_tag="OQQ76_003372"
     CDS             3889..5394
                     /gene="glpD"
                     /locus_tag="OQQ76_003372"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HCS1969745.1"
                     /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA
                     SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR
                     IGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV
                     RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDEGM
                     HLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYK
                     GDPKAVKIEESEINYLLKVYNAHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDY
                     TLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIE
                     GDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGAISDLGEDFGHEFYEAE
                     LKYLVDHEWVRRTDDALWRRTKQGMWLNADQQSRVSQWLVEYTQQKLSLAS"
     gene            complement(5446..6051)
                     /locus_tag="OQQ76_003373"
     CDS             complement(5446..6051)
                     /locus_tag="OQQ76_003373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969746.1"
                     /translation="MIRFRLYIPPVILGFVIVSLLVWLTVIVLAVLIFTLTFLAEIIF
                     SFPLLVVRISLQELQLELMVEYALFFSVMAGIGWQFSRRTPPELKNRLHCWLVFSPVY
                     FWLILSNFILYISPEKSALLENIRNFFLTFVWPPLNFSPFWPQPWTDFVGPISAQLGF
                     ALGYYCHWCRKNRNQRKKWGDWVTCLSLAILAQGPLFNYLQ"
     gene            complement(6054..6821)
                     /locus_tag="OQQ76_003374"
     CDS             complement(6054..6821)
                     /locus_tag="OQQ76_003374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001182130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969747.1"
                     /translation="MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALR
                     STSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRIN
                     LANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS
                     VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIEN
                     PLKQPEPMTEYQVWEDDWIIDECLCAMYDASSESPGK"
     gene            complement(6824..7534)
                     /locus_tag="OQQ76_003375"
     CDS             complement(6824..7534)
                     /locus_tag="OQQ76_003375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969748.1"
                     /translation="MELVNTLFASLAGTDPFTGVDITIANCKSAYWDEGIVQQLINQA
                     LDEGEKFVGADGLEGLLRYDVTLNIGLTSSKVWPGFSLDTATISRLCACGADFGFDPY
                     ISDVPDVQCDLNTTNDVTVQFTAMLNPDERVIIAKRPLKKCDSWIEDVYIFQVFKDAW
                     KFHNNNSLRGFRDKQAALKLYTRHYSVENCAEESCRDCNSCIRPSFSLSRSALIRLNA
                     ANARFVYQPFTRDQRARG"
     gene            complement(7550..>7868)
                     /locus_tag="OQQ76_003376"
     CDS             complement(7550..>7868)
                     /locus_tag="OQQ76_003376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001472437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
                     /protein_id="HCS1969749.1"
                     /translation="ASMMEGMIKVVAEYRNTNNAIGYTFRYYATQMNADKNIKLLAIN
                     GIAPTAENIRNGKYPYIIDAFMVTRENTTSETQKLLEWFLTPQGQSLVEDVGYVPMYK
                     TLP"
BASE COUNT         2017 a         2013 c         1956 g         1882 t
ORIGIN      
        1 tcgtgccaga aaattaaata agtaaattaa ttttttaatt cattgttttt aaaaagatta
       61 tatctttatg tccgtaaccg gagatttccc gcaaagccga tttaccgata atgaaatatc
      121 gtcttttata aggatatcta agatgcgtaa aacagtagct tttggctttg tcggaacggt
      181 gctggattat gccgggcgcg gcagtcagcg ctggtcaaaa tggcgtccga cactctgttt
      241 atgccagcaa gaatcgttgg tcatcgatcg actggaatta ttgcatgacg cccgctcgtg
      301 ctcgctattt gaaacgctta aacgcgatat cgccagcgtt tcgccagaaa cagaagtggt
      361 gagcattgag attgaactgc ataacccgtg ggatttcgaa gaggtttacg cctgcctgca
      421 tgatttcgcc cgtggttaca agtttcagcc agaaaaagaa gactatttaa ttcacatcac
      481 caccggcacc cacgtcgcgc agatttgctg gtttctgctg gcggaagcgc gttatctacc
      541 cgcccggttg atacaaactt caccaccgcg caaaaaagaa caaccgcgcg gtgccggtga
      601 agtgacgatt atcgatctcg atctaagccg ttataacgcc atcgccagcc gctttgccga
      661 ggaacgccag caaacgcttg attttcttaa gtccggcatt gccacgcgta acccccactt
      721 caaccgcatg attgagcaga ttgaaaaagt ggcgattaaa tcccgcgcac cgatcctgct
      781 taacggccca accggtgcgg gaaagtcatt tctggcgcga cgtatatttg aattaaaaca
      841 ggcgcggcat cagtttagcg gcgcgtttgt ggaagtgaac tgcgccaccc tgcgcggcga
      901 taccgccatg tcgacgctgt ttggtcatgt gaaaggcgcg tttaccgggg cgcgggaatc
      961 tcgtgaaggt ttattacgca gcgccaacgg cggaatgttg ttttttgatg agattggcga
     1021 actgggcgca gacgaacagg caatgctgct aaaagccatt gaagagaaaa ccttttaccc
     1081 gtttggcagc gatcgccagg tgagcagtga ttttcagctt atcgccggaa cggtgcgcga
     1141 tttgcgccag ctggttgccg aaggcaaatt tcgcgaagat ctgtacgcgc ggatcaatct
     1201 ctggaccttc accctgccgg gtctacgcca gcgccaggaa gatattgaac cgaaccttga
     1261 ttatgaagtg gagcgccacg ccacactcac tggcgacagc gtgcgtttta actccgaagc
     1321 gcggcgcgcc tggttggctt ttgcgacctc tccccaggca acatggcgcg gtaactttcg
     1381 cgaactttct gccagcgtca cgcggatggc cacctttgcc actagcggac gcatcactct
     1441 ggacgtggtt gaagatgaga taaaccgtct gcgctataac tggcaggaga gccgcccctc
     1501 cgcgcttacg gcgttgctgg gcgcagaggc agaaaacatc gatctcttcg accgtatgca
     1561 actggaacac gttatcgcta tctgccgcca ggcaaagtcg ctttctgcag ccggacgaca
     1621 gctttttgat gtttcgcgcc agggcaaagc cagcgtcaat gacgcggatc ggctacgcaa
     1681 atacctggcg cgttttggtc tgacgtggga agccgtgcag gatcagcaca gctccagttg
     1741 aatatgatgg tccgtcagca cctgcattac gcttactggc ggcggggcgt cggtgtagac
     1801 ggcatctacc atgctgatgc tgcccatatt gaccatcgcg ttacggccaa atttcgagtg
     1861 atcgacaacc agcataacgt ggcgcgagtt ctcaataatg gcgcgcttgg tgcgaacttc
     1921 gtggtaatcg aactccagca gcgagccgtc gctatcgatg ccgcttatcc ccagaatgcc
     1981 gaaatcaagg cggaactggg agataaaatc gagcgtcgct tcgccaatga tcccgccatc
     2041 gcggctgcgt aattcgccac cggcgagaat aatgcggaaa tcttctttta ccatcaacgt
     2101 gttagcaaca ttgagattgt tggtgacaat acgcaaattg ctgtgattaa gcagcgcgtg
     2161 cgccaccgct tccggcgtgg tgccgatatc gataaacagt gtcgagccgt tggggatttg
     2221 ctccgccact ttgcgggcaa tcctctcttt ttcttcggtc tgggtggctt tgcgatcgtg
     2281 ccacggcgtg ttaaccgaac tggaaggcag cgccgcaccg ccatggtgac gcaggatcag
     2341 gttttgctcc gccagctcat tgaggtcgcg gcgaatagtc tgcgggctga cggagaaatg
     2401 ctctaccagc tcttcagtac tgacataacc ctgctgttta accagttcga taataccgtt
     2461 gtgacgttgt gtttgtttca tttataaatc cctggaatta ttttcgtttt cgcgcattga
     2521 gcgaatcaac aaaagccatc gctaaaccca cggctaaccc ggcgatgtgt gctccgttcg
     2581 ccatcgacat cccaaacaaa tcaaaccatc cggcgacaat ccagatcagc gcaaagataa
     2641 ttaacccacg ttgcaggtaa atgccacttt gcggatcgcg ctcaccacgt agccagacgt
     2701 agcccatcag cgcatacacc acgccagaaa gcccgccaaa ccacggcccg ctgaattttt
     2761 gctgcacata gccgcttaac agggcgctaa tgagagtaat aacaattagc ttaccgctac
     2821 cgaggcgttt ttccaccgca ccgccgagat accaccacca gagcaggtta aagaggatat
     2881 gcatcagcga gaagtgcatt aacgcgtggg tgaagtaacg ccagaactca aatttcagtg
     2941 ttggatcgaa tggccaggcc agccataaca tcacttcctg atcgccgaga atttgcatgg
     3001 cgataaacac caccacgcag gcgatcatca ccacccaggt taccggacct gcgcgttcac
     3061 gcaaggcagc aaagaaagga taacggcgat aatgcagacc actgccggta tggcccgcct
     3121 gccagctggc cgccagataa cgcggatctg ccgggttttc gagaaaacgc gccagctccg
     3181 cccgcacgcg ctcggcctgg gactcatccg ccagccagac atcgctttgg ttatgttgtt
     3241 gaatcgtaag gataacaccc tgcgtcgcca tgtaatcaac aaacgcctgc gccacgcggg
     3301 ggttagcaaa agaggtaatc atcaacatcg ttgctgtcgc ttattccaca caaaagggga
     3361 cagtataaag cgttacgcgc cgtacgccac ctctgcggga aactgacgct gccaggcttc
     3421 aaaaccgccg tcaatgctat agaccacatc gtagccctgt tgcagcagat actgcgccgc
     3481 gcctttgcta ctattgccgt gataacacat caccatcacc ggagtgtcaa agtcgttatc
     3541 acgcataaac gcgcccagcg tgtcgttggt taaatggaaa gcctgcaccg catgtcccat
     3601 tgcgaaactc tgtggatcgc gaatatcgac cagcaccgcc tctttttcct gcaacttctg
     3661 gtgcgcgtcg gcaacgttaa tacattcgaa cagatccatg cgtctctctt tctttacaaa
     3721 caagtgggca aatttaccgc acagtttacg tcgaagcggc agataaacgc cataatgtta
     3781 tacatatcac tctaaaatgt tttttcaatg ttacctaaag cgcgattctt tgctaatatg
     3841 ttcgataacg aacatttatg agctttaacg aaagtgaatg agggcagcat ggaaaccaaa
     3901 gatctgattg tgataggtgg cggcatcaat ggtgctggta tcgcggcaga cgccgctgga
     3961 cgcggtttat ccgtgctgat gctggaggcg caggatctcg cttgcgcgac ctcttccgcc
     4021 agttcaaaac tcattcacgg tggcctgcgc taccttgagc actatgaatt ccgcctggtc
     4081 agcgaggcgc tggctgaacg tgaagtgctg ctgaaaatgg ctccgcatat cgccttccca
     4141 atgcgttttc gcctgccaca tcgtccgcat ctgcgcccgg cgtggatgat tcggattggt
     4201 ctgtttatgt acgatcatct gggtaaacgc accagcctgc cgggatcaac cggtttgcgt
     4261 tttggcgcaa actcagtgtt aaaaccggaa attaagcgcg gattcgaata ttctgactgt
     4321 tgggtagacg acgcccgtct ggtactcgcc aacgcccaga tggtggtgcg taaaggcggc
     4381 gaagtgctta ctcggactcg cgccacctct gctcgccgcg aaaacggcct gtggattgtg
     4441 gaagcggaag atatcgatac cggcaaaaaa tatagctggc aagcgcgcgg cctggttaac
     4501 gccaccggcc cgtgggtgaa acagttcttc gacgagggga tgcatctgcc ttcgccttat
     4561 ggcattcgcc tgatcaaagg cagccatatt gtggtgccgc gtgtgcatac ccagaagcag
     4621 gcctacattc tgcaaaacga agataaacgt attgtgttcg tgatcccgtg gatggacgaa
     4681 ttttccatca tcggcaccac cgacgtagag tataaaggcg atccgaaagc ggtgaagatt
     4741 gaagagagtg aaatcaacta tctgctgaaa gtgtataacg cgcactttaa aaaacagctt
     4801 agccgtgacg atatcgtctg gacctactcc ggtgtgcgtc cgctgtgtga tgatgagtcc
     4861 gactcgccgc aggctattac ccgtgattac acccttgata tccatgatga aaacggcaaa
     4921 gcaccgctgc tgtcggtatt cggcggtaag ctgaccacct accgaaaact ggcagaacat
     4981 gcgctggaaa aactgacgcc gtattatcag ggtattggcc cggcgtggac gaaagagagc
     5041 gtgctgccgg gtggtgccat tgaaggcgac cgcgacgatt acgcagctcg tctgcgccgt
     5101 cgctatccat tcctgactga atcgctggcg cgtcattacg cacgcactta cggcagcaac
     5161 agcgagctgc tgctcggcaa tgcgggggcg ataagcgacc tcggggagga tttcggtcat
     5221 gagttctacg aagcggaact gaaatacctg gtggatcacg aatgggtccg ccgcaccgac
     5281 gatgcccttt ggcgtcgcac aaaacaaggc atgtggctga atgcggatca acaatctcgt
     5341 gtgagtcagt ggctggtgga atatacgcag cagaagttgt cgctggcgtc gtaaggatga
     5401 tgcccggttg aagtgcaacc gggctatttg gattccttag actattcatt gtaaataatt
     5461 gaataacggc ccctgagcta aaatcgccaa acttaagcac gttacccaat cgccccactt
     5521 cttcctctgg tttctatttt ttctgcacca atggcaataa tatcccaatg caaaaccaag
     5581 ctgtgcacta atcgggccga caaaatcagt ccaaggctgc ggccaaaaag gggaaaaatt
     5641 caggggaggc cagacaaacg tcagaaagaa atttcggata ttttccagca acgctgattt
     5701 ctctggagaa atataaagaa tgaaattcga gagaattaac cagaaataga ccggcgaaaa
     5761 gaccagccag caatgcagtc tgttttttaa ttcaggaggc gttctgcggg agaattgcca
     5821 accgatgcca gccattacac tgaaaaaaag tgcatattca accattaact caagttgtaa
     5881 ttcctgaaga gaaatacgca caaccaggag cggaaaggag aatattattt ctgccagaaa
     5941 agttaacgtg aatataagta cggctaagac aataaccgtc agccatacca ataatgacac
     6001 gataacaaaa ccgagaatta cagggggaat ataaagccgg aatctaatca tttttatttt
     6061 cctggtgatt cggatgatgc gtcatacatc gcgcataaac actcatcaat tatccagtca
     6121 tcttcccaga cctgatattc tgtcattggt tcgggctgtt ttagcgggtt ctcaatcgct
     6181 tgccgcgctc tttctttcag taaaggatga ttatttctag cccaggcatt gatttgggtg
     6241 gtaatgacgt tatcgatatc gtcctggtta tctctgatat aatcctcaca atatctgttc
     6301 aataaacagg caagagaaac ggtcgaccaa aagccgggaa ctgaattaat ggcatccagc
     6361 aatggcgcaa gagcgatatc ggcacggaaa aacatttcca gcatatactg taattcgaca
     6421 gcttcatcgc cggataccca atcagtcata tactggcagg caaatcgctg taaaattgcc
     6481 cgttcatccg cacgccagtt ttctttgttg gcaaggttga tacggcgcag agaaaaaact
     6541 acgtgaatat tgtcaaaatg cccctgtgca acaaattcca gtaaacgcgg cagaaaatag
     6601 cggacctcat cgctattttg cggatcaggc cctgggctac tattccaggc attgattaag
     6661 gaatacggga tcgctcgtaa cgatgtactc cgtaatgcct tttgttcctg ctgactcagg
     6721 caatattcac aacaaaccac aaatttctgc ggcacccgat aacgacgaaa ggtgtgataa
     6781 atctgctcaa ttaatgcctg catggcgggg ctgggttgca tagttacccc ctcgcccgct
     6841 gatcgcgtgt aaacggttga tagacaaaac gagcattcgc cgcgttcagg cgaataaggg
     6901 cgctacgcga aagggaaaag ctggggcgaa tgcaactatt gcagtctcga cagctttcct
     6961 ctgcgcaatt ttccactgag taatgacgcg tgtagagttt cagtgcggcc tgcttatcgc
     7021 gaaatccgcg taaactgtta ttgttatgaa atttccaggc atctttaaag acctgaaaga
     7081 tatagacatc ctcaatccag gagtcacatt ttttaagcgg gcgctttgct attatcaccc
     7141 gctcatccgg atttagcatc gccgtaaatt gtacggtgac gtcatttgtc gtgttcaggt
     7201 cacattgaac atctggtaca tcactgatat aggggtcaaa tccaaaatca gcaccacagg
     7261 cacaaagacg gctaatggtg gcggtatcga gggaaaatcc cggccatact ttgctggagg
     7321 ttaagccaat atttaatgtg acatcatatc gaagcaatcc ctcaagaccg tcagcaccga
     7381 cgaacttttc cccttcatcc agggcctggt taataagttg ctgaacaatg ccttcatccc
     7441 agtatgccga tttgcagttg gcaatcgtaa tatccacgcc tgtgaaggga tcagtaccgg
     7501 caaggcttgc aaataatgta ttaactaatt ccatttttat tatccagctt taaggtagcg
     7561 tcttatacat cgggacataa cctacatctt ccaccaaact ctgtccctgc ggcgttaaaa
     7621 accactccaa caatttttgt gtctctgacg tcgtattttc ccgcgttacc ataaaggcat
     7681 cgatgatata gggatatttg ccgttgcgaa tgttttcggc agtcggtgca ataccgttaa
     7741 tcgctagcag ttttatattt ttatcggcgt tcatttgtgt tgcgtaataa cggaaggtgt
     7801 aacctattgc gttgtttgta ttacggtatt cggcaacgac tttaatcatt ccctccatca
     7861 tacttgcc
//
LOCUS       DAJVUN010000177         7863 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.177, whole genome shotgun sequence.
ACCESSION   DAJVUN010000177 DAJVUN010000000
VERSION     DAJVUN010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7863
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.177"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(130..4032)
                     /gene="hrpA"
                     /locus_tag="OQQ76_003377"
     CDS             complement(130..4032)
                     /gene="hrpA"
                     /locus_tag="OQQ76_003377"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HCS1969750.1"
                     /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ
                     DIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET
                     GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF
                     SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP
                     RRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ
                     AIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR
                     VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
                     ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
                     FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE
                     AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG
                     EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI
                     ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR
                     IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI
                     DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF
                     YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN
                     LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV
                     RRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKIT
                     FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE
                     QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK
                     LPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELN
                     DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK
                     RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK
                     EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG"
     gene            4233..4838
                     /gene="azoR"
                     /locus_tag="OQQ76_003378"
     CDS             4233..4838
                     /gene="azoR"
                     /locus_tag="OQQ76_003378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HCS1969751.1"
                     /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA
                     ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS
                     TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF
                     LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVAA"
     gene            complement(4889..6205)
                     /locus_tag="OQQ76_003379"
     CDS             complement(4889..6205)
                     /locus_tag="OQQ76_003379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310040.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2/dual specificity phosphatase
                     family protein"
                     /protein_id="HCS1969752.1"
                     /translation="MITERRNVLLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDI
                     PSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCG
                     FLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAER
                     WRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIK
                     IALPYVVGAGSCIVLMELMVMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQG
                     KLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGEFPRHIPAQNAVLDVTF
                     EFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSA
                     LVVAAWLLCYGHCKTVDEAISYIRARRSHIVLKEDHKAMLKLWENR"
     gene            complement(6195..7863)
                     /locus_tag="OQQ76_003380"
                     /pseudo
     CDS             complement(6195..7863)
                     /locus_tag="OQQ76_003380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415928.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional alpha/beta hydrolase/class I
                     SAM-dependent methyltransferase"
BASE COUNT         1932 a         2177 c         1873 g         1881 t
ORIGIN      
        1 tattcatctt gcagcagaga attgtatttt tctgaattcc tgaattttta cccttaccgt
       61 tttagaatta ataaaaaacc cggcgctaaa tgcttaccgg gttttagatt tattaggcaa
      121 atagcagggt taaccgctaa tctgctccat cgcctgcaaa atacgcttat ctgaaatcgg
      181 ataaggcgta ccaagttgtt gagcgaagta actaacacgc agctcttcta tcatccaacg
      241 gatctctttc acgtcttcat cctcacgacg tgcaggcggc agtttgttga tccattgctg
      301 ccatgcctgc tggacgtttt cgactttcag catctgtgca cgatcgcgat gtggatcaac
      361 cgccagtttt tccagtcgtt tttcaatcgc ctgcaaatat cgcagcgtgt cgcccagccg
      421 tttgaagccg ttaccagtga caaaaccgcg atataccaac ccgcccatct gcgctttaat
      481 gtcagaaagc cccagtgcca tggtcatatc cacccgccct ttcagacgtt tgttgatatt
      541 gaacactgcc gtaagaattt gctcgacctg cttcgcaata tctaccaccg tgtcgttcag
      601 ttcggcacgc actttctcat gcagcgcagc aaagccttct tccgtccaga ccgggccacc
      661 attggcgtcg atcagttgat ccacaccgca ggagatacag tcgtcgatca gctccagcac
      721 tttgccatac gggttgaagt acagtcccag cttggctttg ttcggtaact tttcatgtaa
      781 atacttgatc ggcgagggaa tatttagcag cagtagacgg cgaagaccat tccacattgc
      841 ctgtttttgc tccagcgggt tatcaaacag tttgatcgcc acgctgtcgc gttcatccac
      901 cagcgccggc cacgccttca ctttatagtt gccacgcttc tgttcgtaac tttccggcag
      961 ctgaccaaaa ctccagatat gtaagccgct ctgctcgata ccgtcatccg ccaccgcgga
     1021 cagcgtttcc tgcactttgc ctttcagcgc atctttcaga tcttgtagcg agcgcccttc
     1081 ttttagcttc ttgtttttgt catccaccac gcggaaggtg attttcaggt gatcgggcac
     1141 ctgatcccag tgccagtctt cgcggtcaac ggtaacgccg gtcatccgcc gtaactcgcg
     1201 ctcaaggctg tcgagcaacg gtaactccag cggtgtgacg cggcctaaaa acgcttcggc
     1261 gtagtttggt gcaggcacaa aattacggcg taccggtttc ggcaacgatt taatcagagc
     1321 aatcaccaat tcgcggcgca gaccggggat ctgccattca aacccgcttt cctcaacctg
     1381 gttaagtaac ggcagcggaa tatgtacggt cacaccgtcc gcgtctgcgc ctggctcaaa
     1441 ctgatagctc aaacgcagct tgagattgcc ctgatgccag aagttcgggt aatccagctt
     1501 gctgattttt tccgcccctt ctttgatcaa catgctcttt tcaaagttga gcaaatcagg
     1561 cgtttcgcgg ctgacttttt tccaccagct atcgaagtga cgagcggaga ttacatcgtg
     1621 gctgatgcgc tggtcgtaga actcaaacag cgtttcgtca tcaaccagaa tatcgcggcg
     1681 acgtgatttg tgttccagct cttccacttc ggcccgcagt ttcaggtttt cacggaagaa
     1741 tgcgtgacgc gtctgccagt caccttccac cagcgcatgg cgaataaaga gttcacgaca
     1801 taacgccgga tcgatctggc tgtagttgac cttgcgcgcg gcaacaatcg gcaaaccata
     1861 aacagtgact ttttccgttg ccatcaccgc gccctgcgcc cgttcccagt gcggttcgct
     1921 gtaggtacgt ttaatcaaat gctgagcgac aggctccacc cattccgggt cgatacgcgc
     1981 agcaatgcgc ccccacaggc ggctggtttc taccagttcc gccaccatta cccatttcgg
     2041 cggttttttg aataaaccag aaccggggaa gatggagaaa cgcgcgttac gtgcgccggt
     2101 atattcttgt ttatcggcat ctttcatgcc gatatgggaa agtaaacccg tcagcaacgc
     2161 aatgtgaatt tcgcgatact ccgccggttc gctgttaacc ggaatgccaa gttctttcac
     2221 cacctgacgc aactgggtgt agatatcctg ccattcgcgc acgcgcagat agttgagata
     2281 atcggtacga cacaggcgac ggaaggcgtt tgaagaaagc gccttttgct gctcgccaag
     2341 ataattccac agatttacaa acgcgaggaa gtcggattct ttgtcgtgga agcgacgatg
     2401 tttttcgtcc gatgcctgct gtttgtccat cggccgctca cgcgggtcct gaatggagag
     2461 cgcggacgtg ataatcatcg cctcacgcac gcagccatgt ttctgcgctt ccagcaccat
     2521 acgcgccaga cgaggatcga ccggcagttg cgagagctgg cgaccgagcg gcgtcagttt
     2581 ataggcgctg gcctgttcat ccgtggtgat cgcgcccagt tcttcgagca gacgcacgcc
     2641 atcctggata ttgcgtttat ccggtgcttc gacaaacggg aacgcagcga tatcgcccag
     2701 ccccagcgcg gtcatctgca aaataaccga ggccaggttg gtacgcagaa tctccggatc
     2761 ggtaaactcc gggcgcgaga ggaaatcgtc ttcggaatag agacgaatac agatcccttc
     2821 ggacacacga ccacaacggc ctttacgctg attggcagac gcctgtgaaa tgggttcaat
     2881 cggcaaacgc tgcactttgg tgcgatagct gtagcggctg atacgcgccg taccggggtc
     2941 gataacgtat ttaatccccg gtacagtcag cgaggtttcc gcgacgttgg tcgccagcac
     3001 aatgcgtcgc ccgctgtgcg actggaacac gcggttctgt tcgctattcg aaagccgcgc
     3061 ataaagcggc aagatttcgg tatggcgtaa gttcagcttg ttcagcgcat cggcggtatc
     3121 gcgaatttcc cgctcgccgc tcataaagat cagaatgtcg ccagggcttt cctggctcag
     3181 ttcgtctacg gcgtcaaaaa tcgcctgcaa ctgatcgcgc tcggtgtcat cggcttcttc
     3241 aacaatcggg cgatagcgca cttccaccgg ataggtccga ccggagactt cgataatcgg
     3301 cgcattatta aagtggcgag aaaagcgttc cgggtcgata gtcgcggaag tgataatgat
     3361 ttttaggtca ggacgccgcg gcagcaactc tttcaaatag ccgagcagaa aatcgatatt
     3421 caggctgcgt tcgtgtgctt cgtcaataat gatggtgtcg tactgcatca gcaggcggtc
     3481 ttgctggatc tccgccagca ggataccgtc ggtcatcagc ttgaccatcg tgttatcact
     3541 tacgtgatcg ctgaaacgca ctttgtaacc gatgcaaccg cctggctccg ttttcagctc
     3601 ttccgcaata cggttcgcca ccgttcttgc agccagacga cgcggctggg tatggccgat
     3661 cagtccttta atcccgcgcc ccagctccat acagattttc ggtagctggg tcgttttacc
     3721 ggaaccggtt tccccggcga cgatcaccac ctggtgatca cgaatcgctt cgagaatatc
     3781 ctgttttttc tgactaactg gcaaattgtc cggataagtg atttccggtc gtgccgcttc
     3841 acgcagcagg actttccctg ccgcctggtc aatctctttc gccatctcct ggaaaatgtc
     3901 ctgttgtgca tcaggatttt taaccttctt aacaccatgc agacggcgag aaaaacgcag
     3961 tctgtcgcgc agcatcaacg aatccagccg ctgctgcaaa gcagtaaagg tcaatttttg
     4021 ttgttctgtc ataacgttag tgggcagtag tctgcctgat taattttctt ttaaatgata
     4081 gatatagagt accacatcgc ggctttctat gcgttgttca ataaattcga acataggctt
     4141 cgatttattg cgctatctct gtggcaggat tgtgaataaa gtgtcagcaa gcaacggggc
     4201 atcgccaatt caaacatcta taaggaaaca ccatgagcaa ggtattagtt cttaaatcca
     4261 gcatcctggc agggtactct cagtctaatc agttgtccga ttattttgtt gaacaatggc
     4321 gcgaaaagca ctccgctgat gaaatcaccg ttcgcgacct ggctgcaaat ccgattccgg
     4381 tactggatgg cgaactggtt ggcgctctgc gtccgagcga tgcgccgctg actccgcgtc
     4441 agcaggaagc tctggcgctt tccgatgagc tgattgccga gctgaaagcc cacgacgtta
     4501 tcgttattgc ggcaccgatg tataacttca acatctcaac tcagttgaaa aactattttg
     4561 acctggttgc acgcgcaggc gttactttcc gctataccga gaacggtccg gaaggtctgg
     4621 taacgggtaa aaaagccatc gttattacca gccgcggtgg gatccacaaa gatggaccaa
     4681 cggacctggt gacgccgtat ctgtccacgt tcctcggctt tatcggcatt accgatgtga
     4741 aatttgtctt cgccgaaggg atcgcatacg gtccggaaat ggcagcgaaa gcgcagtctg
     4801 acgcgaaagc ggccatcgac agcattgttg ctgcataacc ggacacgatc ttgatgtgga
     4861 ctgtagttca gtccacatct caatccactt acctgttttc ccataatttc agcatcgctt
     4921 tgtgatcttc cttaagcaca atatgcgaac gtctggctcg aatataacta atcgcttcat
     4981 caacggtttt acagtgtccg taacataaca accatgccgc cactaccagc gcactgcgcg
     5041 ataatcccaa cgcgcaatgg accagaacgc tgccttgctc ttcgcgtaat gtttccagca
     5101 tcgccacggc ctgtcggagc tccccctctt ccggaaccac cagatccagc atcggtacac
     5161 agaaatagag tcgatctttt gtcgctcgtc cccgagggaa ttcaaaggtg acgtccagaa
     5221 ccgcattctg tgccggaata tgtcgtggaa actcccctaa ataaacacca gcagtaattt
     5281 tgctcaccgg ctccaggcga cgacaaaacc aacgcataga cagccacatc ccgatgcgcc
     5341 agggcaatgt cagccagtaa acggcgggcg ggagtttccc ctgactatct ttccctgttg
     5401 ttatcgcgcc aagcccaccg tacccacggc caataatgag tagcgataat actggccaac
     5461 ataaccagac tgaccaccat aactgaatca tcaccattag ctccatcaac acaatgcacg
     5521 agcccgcgcc tacgacatat ggcagtgcta ttttgattcg acgttgatca ggtttctgat
     5581 aattccaacg acgatcgacg ggcaccatcc agtcaatcaa catacctacc gccagccctg
     5641 tgatgacatc aataaaatga tgctgccagg tcgtcagagt agaaatagcg atgagtaaaa
     5701 accatccgcc acagacttta cgccacctct cagccagatg ctgacgaaag tgacgccaaa
     5761 gtagccagca gagaataata tgcagcgaag gagactggtt ataaggcaga tcaaacagtt
     5821 caagttgcga aaatagccat cccgtcaccc cactcacttc aggacggata aaactaaact
     5881 tcagcggata gagcaaaaaa ccgcagcagg ccattaccgt tgccagaata agccggtgga
     5941 caagtcggcg ctgttcgaat gtcgtgctac aaacgaacag cgaaaatcca tataaaagat
     6001 ccagactcca gtaaggaaca atagtccagg gaagaaaagg gatcgccgtt tcccaaccga
     6061 atacctgact ggggatatca tggctgttaa ggtcctgaac cgcggtgaac tgattaagag
     6121 atccataggt gaagaaaaaa aacggggcca gcaacaataa ccagccagcg ccttgtagca
     6181 atacgttccg acgttcagtt atcacgacgc accgccatcg aaaccgtaaa aataccccac
     6241 tcatcaatcc gttgtgtgca tttatcaaat ccggcatcac gcacgagtga atccatctcc
     6301 ccttgcgaac gcacgcgcat tacccacggt ttaccatctt tatgactggt taacaccccg
     6361 gcaatcatct ccagttgagg gtgccacggc tgcccggtgt agatgagaat gccgaccggt
     6421 tcgatggcat tggcaagacc tgcgagtgag ttttttacct gctcattttc gggaaaaagc
     6481 tcatacagtc cagagacaat tgccagcgta ggccgcggag ttaacgcgct gagttcctcc
     6541 gggttaaacg catcgccctg ttcaaaacgc acccgcccag acattccccg ttgggcaatc
     6601 atctcttgcc cctgtgcaac atttaactcg ctgtaatcac gtaacaaaat atcgcttacg
     6661 gcaggctcgt ttgccagcgc atccagtaca tagcgcccat gccctgcggc aatgtcaacc
     6721 acgcggacgg ctaaaccttt ggcgtggaga tcggcaacgg cttgtttaat cagtatttgt
     6781 aaatgggttt tgcgctggcg aataccgcgc cagccaacac tgttcaggta gattttgtcg
     6841 attaagcgcc cgaatgcgtt actaccttgc ggttgatttt gatagacata atccagcgaa
     6901 ctgcctgaat caaagccggt gctcattccg agatgcaggc ccgcagagtg cgtcccgaac
     6961 aatttcatcg cctttcgcat aaagcgatac gctaaatcaa ccggcgataa tggcacgagt
     7021 ccaccagaaa gtagccgcca ttgatccgct gatggtcctg tgcagtcttc atgctgataa
     7081 tcaaattttt gcgatttgtt agcatataaa cgactaataa agctttgcat tttttcaaat
     7141 gccagcgccc tgttctcttc acccaacgtg tcgtgataaa agcctggcag cagatgcagc
     7201 tctttcagag ggctacgtaa tctctgataa aaatcaatct gcggttggcg atgcaccaca
     7261 tagtcatcgc ctgatatcag aagttgcgtg gggagcgtaa tcgccgccgc atctctaata
     7321 atacgttcag acgttttata gagatcgagc aagatattga cggcaatcgc ccgtgtgatc
     7381 agcggatcat tattgaaact cgccacccgt tgccgatcgt gggtcaaata gcgtcctttc
     7441 acataggaat taataaaaaa cagaccacgc agacgatgcc ataacgccag cgcaggacgt
     7501 gccagcggca catacaattt aaccttaaag gccggagaag ccagcaccag cccgcgaatt
     7561 gcaggcgcat aatcatgaac ctatgtggca accagcactg cgccgacgct ttgcgcgatc
     7621 acaaccacct cttccagtcc aacctagctg tcgctggcag caaaacggac aaattcatcg
     7681 acatcctgca ctgaacgcgc aagagatggg ctataaccac gcggccccga agtttttcca
     7741 tgcccccggg catcccatgc ataaaaagca gtatctggca tcgccagttc atcaacgata
     7801 tgttgtagac gaccagaatg ttcatggcca cgatgaaata agacaatgac ctttttcgcc
     7861 cct
//
LOCUS       DAJVUN010000178         7848 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.178, whole genome shotgun sequence.
ACCESSION   DAJVUN010000178 DAJVUN010000000
VERSION     DAJVUN010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7848
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.178"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            67..132
                     /gene="yobI"
                     /locus_tag="OQQ76_003381"
     CDS             67..132
                     /gene="yobI"
                     /locus_tag="OQQ76_003381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response small protein YobI"
                     /protein_id="HCS1969753.1"
                     /translation="MYIFITHFFTEYVIFKYLLPI"
     gene            271..882
                     /gene="ruvA"
                     /locus_tag="OQQ76_003382"
     CDS             271..882
                     /gene="ruvA"
                     /locus_tag="OQQ76_003382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HCS1969754.1"
                     /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE
                     AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV
                     EREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
                     QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL"
     gene            891..1901
                     /gene="ruvB"
                     /locus_tag="OQQ76_003383"
     CDS             891..1901
                     /gene="ruvB"
                     /locus_tag="OQQ76_003383"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HCS1969755.1"
                     /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF
                     IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT
                     NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIIIGEGPAARSIKIDLPPFTLIGA
                     TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARG
                     TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF
                     FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE
                     MP"
     gene            complement(1951..2736)
                     /gene="znuB"
                     /locus_tag="OQQ76_003384"
     CDS             complement(1951..2736)
                     /gene="znuB"
                     /locus_tag="OQQ76_003384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HCS1969756.1"
                     /translation="MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL
                     GVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVS
                     LMSNIRVDLMAYLFGDLLAVTPEDLIAIAIGVVIVVAILFWQWRNLLSMTISPDLAFV
                     DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV
                     LVGMVAVTGGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS"
     gene            complement(2733..3488)
                     /gene="znuC"
                     /locus_tag="OQQ76_003385"
     CDS             complement(2733..3488)
                     /gene="znuC"
                     /locus_tag="OQQ76_003385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HCS1969757.1"
                     /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS
                     TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL
                     PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVPLY
                     DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG
                     PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS"
     gene            3567..4499
                     /gene="znuA"
                     /locus_tag="OQQ76_003386"
     CDS             3567..4499
                     /gene="znuA"
                     /locus_tag="OQQ76_003386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HCS1969758.1"
                     /translation="MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIAD
                     GVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLLGAKQV
                     TIAQLEDVKLLLMKSIHGDDDDHDHAEKSEEDHHHGDFNMHLWLSPEIARATAVAIHG
                     KLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFG
                     LTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG
                     TLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD"
     gene            4515..5837
                     /gene="mepM"
                     /locus_tag="OQQ76_003387"
     CDS             4515..5837
                     /gene="mepM"
                     /locus_tag="OQQ76_003387"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HCS1969759.1"
                     /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD
                     ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST
                     GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQHLTWEVSRRE
                     TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ
                     WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN
                     GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE
                     VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP
                     HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD"
     gene            5957..6928
                     /gene="lpxM"
                     /locus_tag="OQQ76_003388"
                     /gene_synonym="msbB"
     CDS             5957..6928
                     /gene="lpxM"
                     /locus_tag="OQQ76_003388"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416369.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS1969760.1"
                     /translation="MEMKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMVGIALTPPKFR
                     DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE
                     LAIRGPEKIQPRVDWQGLQIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM
                     FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE
                     FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT
                     IARRMNEEVEIFVGPRPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK"
     gene            complement(7017..>7848)
                     /locus_tag="OQQ76_003389"
     CDS             complement(7017..>7848)
                     /locus_tag="OQQ76_003389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HCS1969761.1"
                     /translation="TMTLIYHYNSSYLRFAFTLTQDSPRVDVQTFIDWHEPNVSLKVK
                     FPVSVQTSLAQCQIQFGVIDRPTHSDDSFAFAKDEIPAHHWVDLSDRETGIALIAKNK
                     YGYRVKDQTLELTLLRSQHKPGEVVKTDNYDNFLINNFADIGKQKFIFSLFPHHGDYR
                     VGGVINQAYIMNHPLQVVPVKPHPGELPPSLSFFAIDTNSVIIETIKLAEDGDGIIVR
                     LYESHGLEISAMLSWVCNYHYVQYVDLQENKLDDSFYCNQYCNLEFKPFEIITLRLTQ
                     "
BASE COUNT         2101 a         1853 c         1977 g         1917 t
ORIGIN      
        1 tcattccatt gaaatagata cgaatatacg taatagcata aaaaaattat tttttcagga
       61 ggcgcaatgt atatttttat tacgcatttc ttcactgaat acgtaatatt taaatatttg
      121 cttccaatat aacctgtaga ataaatcata ctgcgccatt tttcagttca tcgagacacc
      181 tcgcaagttt tcttcatcct tcgctggata tctatccagc atttttttat catacagcat
      241 tatctttgat tcattacgca ggagcgtcat gtgataggca gactcagagg catcatcatt
      301 gaaaaacaac ccccgctggt gttaattgaa gtgggcggcg taggctatga agtgcatatg
      361 ccgatgacct gtttttatga actccctgaa gcgggtcagg aagcgatcgt tttcacccac
      421 tttgtggtgc gtgaagacgc gcaactgctg tacggtttta acaataaaca agagcgcaca
      481 ttgttcaaag agttgatcaa aaccaacggc gtcggcccga agttggcgct ggcgatcctc
      541 tccggaatgt cagcgcagca gttcgttaat gccgttgaac gtgaagaagt gggggcactg
      601 gtgaaactgc cgggtattgg caaaaaaacc gccgaacgct tgattgttga aatgaaagac
      661 cgatttaaag gtttgcatgg cgatctgttt accccggccg ccgacctggt actcacatca
      721 cctgccagcc cggcgaccga cgatgctgaa caggaagcgg ttgccgcgct ggtggcgctg
      781 ggctataaac cacaagaagc aagccgcatg gtgagcaaaa tcgctcgccc tgacgccagc
      841 agtgaaacat taattcgcga agccctacgc gccgcgttat gaggtaaagg atgattgaag
      901 cagaccgtct gatttctgcc ggtaccactt tgccggaaga tgtagcagat cgcgccattc
      961 gccctaaatt actggaagag tatgttggtc agccgcaggt tcgttcacag atggagattt
     1021 tcatcaaagc agcgaaactg cgcggcgatg ccctcgatca tttgttgatt tttggtcctc
     1081 cggggttggg taaaactacg cttgccaaca ttgtcgccaa tgaaatgggc gttaatttac
     1141 gcacgacttc tggtccggtg ctggaaaagg cgggcgatct ggcagcgatg ctcactaacc
     1201 ttgaaccgca tgacgtgctg tttattgatg agatccaccg tttatcgcca gttgttgaag
     1261 aagtgctgta tccggcaatg gaagactacc aactggatat cattattggt gaaggtccgg
     1321 cggcacgctc cattaaaatt gatttgccgc cgtttaccct gattggcgca accacgcgcg
     1381 caggttcgct gacatcaccg ttgcgcgacc gttttggtat tgtgcaacgt ctggagtttt
     1441 atcaggtgcc ggatctgcaa tatatcgtta gtcgcagtgc acgctttatg gggcttgaga
     1501 tgagtgatga cggcgcgctg gaagttgctc gtcgcgctcg cggtacgcca cgtattgcca
     1561 accgtctgct gcgtcgagtg cgtgatttcg ccgaagtgaa gcacgatggc accatctcgg
     1621 cagatatcgc tgctcaggcg ctggacatgt tgaatgtcga tgctgaaggt ttcgattata
     1681 tggaccgcaa attgttgctg gcggtaatcg ataagttctt tggtgggccg gtaggtctgg
     1741 ataacctggc ggcggctatt ggcgaagaac gtgaaaccat tgaggatgtg ctggaacctt
     1801 atttgattca gcaaggcttt ttgcagcgta caccgcgtgg gcgtatggcg acgacgcggg
     1861 cgtggaatca ctttggcata acgccgccag aaatgccgta agtcggattg gtcgctcgcg
     1921 ccgcatccga caaatgtgtt cagcgataga ttagctggcc tgctttttca tcatactgat
     1981 aataaataac agtgctgcac atagcaccac cgacggaccc gccggcgtat cgtaaaatgc
     2041 ggaaaaggtt aaaccgcccg ttacggcaac catccccacc aacacagcga cacctgccat
     2101 ctgttccggc gtgcgggcaa agcgacgtgc agtagcagca ggaataatca gcagtgaagt
     2161 aataatcaac gcgccaacaa atttcatcgc tacaccaatc gtcaatgccg tcaccagcat
     2221 caacaacaat ttcacgcgct gtaatttcac accatcaaca aacgccagat ccgggctaat
     2281 cgtcatcgac agcaaattgc gccattgcca gaacaaaata gccaccacga tgaccacgcc
     2341 aatcgcaata gcgatgagat cttctggcgt cactgccagc aaatcaccga acaggtaagc
     2401 catcaaatca acacgaatgt tagacatcag actaacgacc accaggccca gcgacagggc
     2461 actgtgcgcc ataatcccta ataacgtgtc aatcgccagc tgtggacgct tctccagcca
     2521 taccagaccg cccgccagga gcagcgtaac ggcaattacc gcatagaatg gattcacgtc
     2581 cagcaacaaa ccaaacgcga cgccaagtaa tgaggcatga gccagcgtat caccgaaata
     2641 agacatacga cgccagacta caaacgaacc cagcggaccc gcggcacagg cgagcatgat
     2701 cccggctaac caaccgggaa ataataattc aatcatgagc gatcatttcc ccgacgcaaa
     2761 acaattcgtc cctgtaaatc gtgacgatga ttatgatgat ggcgatagat acccagttgt
     2821 tcagcaccac gaggaccaaa catagaaata aactccggat gtagggaaac aacttccggt
     2881 gtgccggaac aacaaatgtg gtgattcaga cacagcactt catcggtttt tgccattacc
     2941 agatgcagat cgtgagagac cattaaaacg ccacaatcca gttcgcgacg caactggtca
     3001 ataaggtcat ataacggcac ctggccattt acatccacgc cttgagtggg ttcatccagc
     3061 actaataatt gcggtcgatt taacaatgct cgcgctaaca gtacacgctg tgtttcgcca
     3121 ccagagagct tttgcatcgg tgcgttaatc agatgcccgg cctggacacg tttcagtgca
     3181 ggcaaaatat cttctttatg tgtgccaggg cgtaagcgta aaaaacggtt tacggtcagt
     3241 ggcaacgtgg tgtcgagata cagcttctgc ggtacatagc cgatgcgtag ttttccgttg
     3301 cgcttgataa ccccttcatc gggtgttacc agcccgagca ctacccgtac cagtgtcgac
     3361 ttacctgcgc catttggccc aagtaaagtc aaaatttttc caggtttaag ttccagtgac
     3421 acatcagaga ggacgcggcg ttggccaaaa gaaaccgaga cattttccag ggaaaccaga
     3481 cttgtcatgt taattttagt cttgcagtag tcatgaaatg ttataatatc acacttctca
     3541 tattcattac gatgattggt cgcattatgt tacataaaaa aacgcttctt ttcgcagcat
     3601 tatccgccgc tctctgggga ggtgcaacac aggccgcaga tgccgccgtt gtcgcttcgc
     3661 ttaaacccgt tgggttcatc gcttctgcca ttgctgatgg tgtaacagaa acggaggttt
     3721 tactgcctga cggcgcttca gaacatgatt attcactgcg tccatcggat gtaaaacgct
     3781 tacagaacgc ggacttagtc gtttgggttg gcccggagat ggaagcgttt atgcaaaaac
     3841 cggtaagcaa attactagga gcgaagcagg taacgattgc gcagcttgaa gatgtgaaac
     3901 tgctactgat gaaaagtatt cacggcgatg atgatgatca cgaccacgcg gaaaaaagtg
     3961 aagaagatca ccatcacggc gatttcaaca tgcatctttg gctttcccca gagatagcgc
     4021 gggctacagc ggttgcaatc catggaaaat tagtggaact tatgccgcaa agtcgagcca
     4081 aacttgacgc caacctgaag gattttgagg cacaattagc ctcaaccgaa acgcaggttg
     4141 gtaacgagct cgcgccgctc aaggggaaag gttatttcgt ttttcacgat gcttacggct
     4201 atttcgaaaa acagttcgga ctgacaccgc ttggtcattt taccgttaac cctgagattc
     4261 aacctggcgc gcagcgttta catgaaataa gaacacagtt ggttgagcaa aaagcaacct
     4321 gcgtttttgc tgagccacag ttcaggccag cggtcgttga gagcgtcgca cgagggacat
     4381 ccgttcgtat gggaacgttg gatcccttgg ggacgaatat caaactgggt aaaacaagct
     4441 attcagaatt cctgagtcaa ttagccaacc agtatgcgag ctgcctgaaa ggagattaat
     4501 gaggaagtga ttacgtgcaa cagatagccc gctctgtcgc cctggcgttt aataatttac
     4561 cgcgaccaca ccgcgttatg ttggggtcgc tcaccgttct tactctggcc gtcgctgtct
     4621 ggcggcccta tgtttatcac cgcgatgcca cgccaattgt caaaaccatt gagctggaac
     4681 agaacgaaat tcgttcgctc ttacctgaag ccagtgagcc gattgatcaa gctgcacaag
     4741 aagatgaagc cattccccag gacgaactgg atgacaaaat cgccggtgaa gcgggtgtgc
     4801 atgaatatgt tgtttccact ggcgatacgc taagcagcat tctcaatcag tatggtattg
     4861 atatgggtga tatcacccaa ctggctgcgg ccgacaaaga attgcgtaac ctgaaaatcg
     4921 gtcaacaact ctcctggaca ttaaccgcgg acggcgaact gcagcacctc acctgggaag
     4981 tgtctcgtcg tgaaacccga acctatgacc gtactgccgc taacggtttt aaaatgacca
     5041 gcgaaatgca gcaaggagag tgggttaaca atctgctgaa aggtaccgtc ggagggagct
     5101 ttgttgccag cgccagaaac gccggtttaa ccagcgccga agtgagcgca gtgattaaag
     5161 ccatgcagtg gcaaatggat ttccgcaaac tgaaaaaagg cgatgaattt gcggtgttaa
     5221 tgtctcgaga gatgcttgat ggtaaacgtg agcaaagcca gctgctgggc gtacgtttgc
     5281 gttcagaagg taaagattat tacgcaatcc gcgctgagga tggcaaattc tacgaccgta
     5341 acggtactgg tctggcgaaa ggattcttgc gattcccgac ggcgaaacag ttccgtatct
     5401 cgtctaactt taacccgcgt cgtactaatc cggtgaccgg tcgcgttgca ccacacagag
     5461 gtgttgattt cgccatgccg cagggtacgc cagtgctttc agtgggtgac ggtgaagtgg
     5521 tggttgccaa acgcagtggc gcagcaggtt attatgtggc tattcgtcat ggtcgcagct
     5581 acaccacgcg ttatatgcac ttgcgcaaga ttctggtgaa accgggacag aaggtgaaac
     5641 gtggcgaccg tatcgcgctt tccggtaata ccggacgttc aaccgggccg catctgcact
     5701 atgaagtatg gataaaccag caggccgtaa acccgctgac ggcaaaactg ccgcgtaccg
     5761 aagggctgac cggctccgat cgtcgcgaat tcctggcgca ggccaaagag attgtgccgc
     5821 agctacggtt tgattaatta acatccattc gcagccggta cgcagtcagt accggctttt
     5881 tttatttggt gcggggcaag ttgcgccgct acactatcac cagattgatt tttgccttat
     5941 ccgaaactgg aaaagcatgg aaatgaaaaa aaataatagc gaatacattc ctgagtttga
     6001 taaatccttt cgccacccgc gctactgggg agcatggctg ggcgtagcag cgatggtggg
     6061 tatcgcttta acgccgccaa agttccgtga tcccattctg gcacggctgg gacgttttgc
     6121 cggacgactg ggaaaaagct cacgccgtcg tgcgttaatc aatctgtcgc tctgctttcc
     6181 agaacgtagt gaagctgaac gcgaagcgat tgttgatgag atgtttgcca ccgcgccgca
     6241 agcgatggca atgatggctg agttggcaat acgcggaccg gagaaaattc agccgcgcgt
     6301 tgactggcaa gggctgcaga tcatcgaaga gatgaggcgt aataacgaga aagttatctt
     6361 tctggtgccg cacggttggg ccgtcgatat tcctgccatg ctgatggcct cgcaagggca
     6421 gaaaatggca gcgatgttcc ataatcaggg caacccggtt tttgattatg tctggaacac
     6481 ggtgcgtcgt cgctttggcg gtcgtctgca tgcgagaaat gacggtatta aaccattcat
     6541 ccagtcggta cgtcaggggt actggggata ttatttaccc gatcaggatc atggcccaga
     6601 gcacagcgaa tttgtggatt tctttgccac ctataaagcg acgttgcccg cgattggtcg
     6661 tttgatgaaa gtgtgccgtg cgcgcgttgt accgctgttt ccgatttatg atggcaagac
     6721 gcatcgtctg acgattcagg tgcgcccacc gatggatgat ctgttagagg cggatgatca
     6781 tacgattgcg cggcggatga atgaagaagt cgagattttt gttggtccgc gaccagaaca
     6841 atacacctgg atactaaaat tgctgaaaac tcgcaaaccg ggcgaaatcc aaccgtataa
     6901 gcgtaaagat ctttatccta tcaaataaaa aaaagcctct caaattattg agaggctgta
     6961 ctcgataaaa aatctcaatg agtgttccca ctattttgag tttttaggtt agtacgctat
     7021 tgagttaatc gtagcgtgat aatttcaaaa ggtttgaact caagattgca atattgattg
     7081 caataaaaac tgtcatctaa cttattttct tgaagatcga catattgaac gtagtgataa
     7141 ttacataccc acgaaagcat ggctgaaatt tctaatccat gactctcata taatcttacg
     7201 attataccgt cgccgtcttc agctaatttt attgtttcga tgataacgct gttagtatcg
     7261 atagcaaaaa atgatagtga agggggtaat tcacccgggt gcggtttgac agggacgacc
     7321 tgtaagggat gattcattat ataggcttga ttaataacac cacccacacg gtaatctcca
     7381 tgatgaggaa ataaggagaa tatgaatttt tgtttaccaa tatctgcaaa attattaatc
     7441 aggaaattat cataattgtc tgtcttaaca acttccccag gtttatgctg cgaacgcagc
     7501 aaagttaatt caagcgtctg gtctttgaca cggtagccat atttgttttt tgctattaaa
     7561 gctatgccag tttctcgatc agaaaggtcg acccagtgat gtgctggtat ttcatctttg
     7621 gcaaaagcga acgaatcatc gctatgcgtt ggtctgtcaa ttacaccgaa ctgaatttga
     7681 cattgtgcaa gagatgtttg tactgacacc gggaatttga ctttgagaga aacattaggt
     7741 tcgtgccaat caataaaagt ttggacatca acgcgtggac tgtcctgtgt cagggtaaat
     7801 gcgaagcgaa gataagagga attgtagtga taaatcagcg tcatcgta
//
LOCUS       DAJVUN010000179         7771 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.179, whole genome shotgun sequence.
ACCESSION   DAJVUN010000179 DAJVUN010000000
VERSION     DAJVUN010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7771
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.179"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            7..174
                     /locus_tag="OQQ76_003390"
     CDS             7..174
                     /locus_tag="OQQ76_003390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfL family protein"
                     /protein_id="HCS1969762.1"
                     /translation="MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAIYIS
                     KIIGGCGPTAQ"
     gene            419..1807
                     /gene="frlA"
                     /locus_tag="OQQ76_003391"
     CDS             419..1807
                     /gene="frlA"
                     /locus_tag="OQQ76_003391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine/psicoselysine transporter"
                     /protein_id="HCS1969763.1"
                     /translation="MTANSPLQRVGQEKGIAMGSQELQRKLGFWAVLAIAVGTTVGSG
                     IFVSVGEVAKAAGTPWLTVLTFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS
                     RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLPGKFIAAGLIIAFMLLHL
                     RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGI
                     SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISDLMPFDKL
                     ANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF
                     KCFGHVHPKYNTPDVSIILQGALGLFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC
                     RKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAF
                     WAKRSRQLNALS"
     gene            1828..2850
                     /gene="frlB"
                     /locus_tag="OQQ76_003392"
                     /pseudo
     CDS             1828..2850
                     /gene="frlB"
                     /locus_tag="OQQ76_003392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417830.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-phosphate deglycase"
     gene            2900..3730
                     /gene="frlC"
                     /locus_tag="OQQ76_003393"
     CDS             2900..3730
                     /gene="frlC"
                     /locus_tag="OQQ76_003393"
                     /EC_number="5.1.3.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 3-epimerase"
                     /protein_id="HCS1969764.1"
                     /translation="MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL
                     KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEM
                     NAGYTLISAAHAGYLTPPNVIWGRLAENLSELYEYAENIGMDLILEPLTPYESNVVCN
                     ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTH
                     YIPGEGKMPLRELMRDIIERGYEGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
                     "
     gene            3727..4512
                     /gene="frlD"
                     /locus_tag="OQQ76_003394"
     CDS             3727..4512
                     /gene="frlD"
                     /locus_tag="OQQ76_003394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-kinase"
                     /protein_id="HCS1969765.1"
                     /translation="MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCI
                     TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADF
                     ALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHL
                     DFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVID
                     TMGAGDSFIAGFLCGWSAGMTLPQAMAQGTACAAKTIQYHGAW"
     gene            4612..5343
                     /gene="phoB"
                     /locus_tag="OQQ76_003395"
     CDS             4612..5343
                     /gene="phoB"
                     /locus_tag="OQQ76_003395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417834.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PhoB"
                     /protein_id="HCS1969766.1"
                     /translation="MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQ
                     YNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATK
                     EKVIEQERVSAAPFCEKLNIPGNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEI
                     YVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQN
                     DKPVHVSELFCRANRITLTIDNKRH"
     gene            complement(5495..6580)
                     /locus_tag="OQQ76_003396"
     CDS             complement(5495..6580)
                     /locus_tag="OQQ76_003396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HCS1969767.1"
                     /translation="MKTFPLQSLTLIEAQQKQFALVDTICRHFPGAEFLTSGDLGLTP
                     GLNQPRITQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYP
                     TTRVIVEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATL
                     RAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRA
                     TLYSGGSQIQGAQALEVLRCLVFAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANA
                     QSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSE
                     HCAIRINPNRSGEETVLRILRESIASI"
     gene            complement(6592..7677)
                     /locus_tag="OQQ76_003397"
                     /pseudo
     CDS             complement(6592..7677)
                     /locus_tag="OQQ76_003397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709150.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YhfT family protein"
BASE COUNT         1821 a         2165 c         2020 g         1765 t
ORIGIN      
        1 atgtaaatga acaaatttat taaagttgca ctggtaggtg cagtactggc tacgttaact
       61 gcatgtactg gtcatattga aaaccgtgat aagaactgct cttacgacta cctgctgcac
      121 ccggcaattt atatttctaa aatcattggc ggttgcggtc ctactgcaca gtaagtctct
      181 gacagaaatc ggctaacacc ggtttaattg cccgacgccc tctggatttt ccgagggcgt
      241 atttgtttct atatccttct tgctccccac ccgtaaaaat attttcactt taatttcaat
      301 tggataacta cattcattag ccacagcgcg atcctgtgcg aaattttgtg atcttcctcc
      361 gcattacata acatcatatg ttattatatt catcatgcat tgtcatgtta ccttttaaat
      421 gactgcaaac tctcccctac aacgtgttgg acaagaaaaa ggtatcgcta tgggaagcca
      481 ggaactccaa cgcaagctcg gattttgggc cgttcttgca atcgccgtcg ggacaaccgt
      541 cggctccggt atttttgtat ctgtgggtga agtggcaaaa gcagcgggca cgccgtggct
      601 tacggtgctc acgtttgtca ttggcgggtt aattgtgatc ccgcaaatgt gcgtctatgc
      661 ggaactatcc accgcttatc cggaaaatgg cgcagattat gtttatctga aaaatgccgg
      721 aagccgaccg ctggctttcc tctccggctg ggccagcttc tgggccaacg atgcgccgtc
      781 attgtcgatt atggcgctgg cgattgtcag caatcttggc tttttaacgc ctatcgatcc
      841 gttgcccggt aaatttatcg ccgccggatt aattatcgcc tttatgttgc tacacctgcg
      901 ctccgttgaa ggcggcgcag cgtttcagac gctaattacc atcgccaaaa ttatcccgtt
      961 cactatcgtc attggccttg ggatcttctg gtttaaagcg gagaattttg ccgcccctac
     1021 caccactgcg attggcgcaa cgggcagctt tatggcgctg ctggcgggga tctctgccac
     1081 cagttggtcg tataccggca tggcctctat ctgttatatg accggcgaaa ttaaaaaccc
     1141 cggaaaaacc atgccacgag cgctgattgg ttcctgtctg ctggttctgg tgctctacac
     1201 cctgctggcg ctggtgattt ccgacctgat gcccttcgac aaactcgcca attctgaaac
     1261 gccgatttcc gacgccctga cctggatccc cgcactcggc agcaccgctg ggatctttgt
     1321 tgccatcacg gcgatgatcg tcattcttgg ttcgctttcc agctgcgtga tgtaccagcc
     1381 gcggctggaa tacgcgatgg cgaaagacaa cctgttcttt aaatgcttcg gccatgtgca
     1441 tccgaaatac aacacgccgg atgtctccat catcctgcaa ggggcgctgg ggctcttctt
     1501 catcttcgtt tccgatctca ccagcctgct gggttatttc accctggtga tgtgtttcaa
     1561 aaataccctc accttcggct ccatcatctg gtgtcgtaaa cgcgacgatt acaaaccgct
     1621 gtggcgtact ccggctttcg ggctgatgac caccctcgcc attgcgtcaa gcctcattct
     1681 ggtcgcctca acctttgtct gggcaccgat tcccggcctt atctgcgccg tcatcgttat
     1741 tgctactggt ctgcctgctt acgccttctg ggcgaagcgt agccgccagc tcaacgcttt
     1801 gtcgtaatgt tatctggaga aaataaaatg ttggatattg ataaaagcac cgtggacttt
     1861 ctggtcaccg aaaatatggt tcaggaagtg gaaaaagttc tcagccatga cgttccgctg
     1921 gtgcacgcca tcgtggaaga gatggtgacg cgcgacattg atcgtattta tttcgttgcc
     1981 tgcggctcgc cactcaacgc ggcgcaagcg gcgaaacatc tggcggatcg cttttccgat
     2041 cttcaggtct acgccatttc cggctgggag ttctgcgata acaccccgta tcgcctcgac
     2101 gatcgttgcg cggtgattgg cgtttctgac tacggtaaaa cggaagaggt aatcaaagcg
     2161 ctggagctgg gccgggcctg cggcgcactc actgcggcgt tcaccaaacg cgcggacagc
     2221 ccgattacct cggcggcgga atttagcatt gattatcagg ccgactgtat ctgggaaatt
     2281 cacctgctgc tctgctacag cgtggtgctg gagatgatca cccgcctcgc gccgaacgcg
     2341 gaaatcggca agatcaaaaa cgatctcaag cagttgccga atgcgctcgg tcatctggta
     2401 cgtacctagg aagaaaaagg ccgccagctt ggtgaactgg ccagccagtg gccgatgatt
     2461 tataccgttg ctgcgggtcc gctgcgtccg ctgggttaca aagaaggcat tgtaacgctg
     2521 atggaattta cctggacgca cggctgcgtg attgagagcg gagagttccg ccatggcccg
     2581 ctggagattg tcgaaccggg cgttccgttc ctgttcctgc tcggcaatga tgaaagtcgc
     2641 cacaccaccg aacgcgccat taactttgtt aaacagcgta ctgacaacgt gatcgtcatc
     2701 gattacgccg aaatttcgca agggctgcac ccgtggctgg caccgttcct gatgttcgtg
     2761 ccaatggagt ggctctgcta ctacctgtct atttacaaag atcacaaccc ggatgaacgc
     2821 cgctattacg gtggtctggt ggaatattaa tccctcgccc ggcccggcaa cgggccggat
     2881 ttacgcaagg agttacccga tgaaaacagg tatgtttacc tgcggccacc agcggctgcc
     2941 tattgaacac gcatttcgtg atgcaagcga gctgggttac gacggcatcg aaatttgggg
     3001 cggtcgcccg cacgcgttcg cgccggactt aaaagcgggc ggcatcaaac aaatcaaggc
     3061 gctggcgcag acgtatcaga tgccgattat cggctatacg ccagaaacca acggctatcc
     3121 gtataacatg atgctgggcg atgaacatat gcgtcgcgaa agcctcgaca tgatcaagct
     3181 ggcgatggat atggcaaaag agatgaacgc gggttatacg ctgatttccg cggcccacgc
     3241 gggctatctc acgccaccta atgttatctg gggacggctg gcagagaacc taagcgaact
     3301 gtatgagtac gcggaaaaca tcggcatgga tctaatcctc gaaccgttaa cgccgtatga
     3361 atcgaacgtc gtgtgtaatg ctaatgatgt gcttcatgcg ctggcgctgg tgccttcgcc
     3421 gcgcctgttc agcatggtcg acatttgcgc gccgtatgtc caggcggaac cggtgatgag
     3481 ttatttcgac aaactgggcg ataaattacg tcatctgcat attgtcgaca gcgacggggc
     3541 cagcgacacg cattacattc ctggagaagg caaaatgccg ctgcgggaac tgatgcgcga
     3601 tattattgag cggggctatg agggttactg tacggtggag ctggtgacga tgtatatgaa
     3661 cgagcccaga ctctatgccc gccaggcgct ggaacgcttt cgcgcgctgc tgccggagga
     3721 tgagagatga aaaccctggc gacaatcggc gataactgcg tcgatatcta cccgcaactg
     3781 aataaagcgt tttctggcgg taatgcggtc aatgtggcgg tgtactgcac tcgctacggc
     3841 atacagccgg gatgcattac ctgggtgggt gacgatgact acggcacaaa gctgaagcag
     3901 gatctcgccc gcatgggcgt cgatatcagc catgtccata cgaaacacgg cgttaccgca
     3961 caaactcagg tggaactgca cgacaatgat cgcgtttttg gcgactacac cgaaggcgtg
     4021 atggccgact ttgccctgag tgaagaggat tacgcctggc tggcgcagta tgacattgtg
     4081 cacgcggcaa tctggggaca tgcggaagac gcattcccac agctgcacgc tgcgggcaaa
     4141 cttaccgctt tcgacttctc cgacaagtgg gacagcccgc tctggcagac actggtgccg
     4201 catctcgatt ttgcctttgc ctccgcaccg caagaagacg aaacgctgcg tctgaagatg
     4261 aaagcgattg ttgcccgtgg cgcaggaaca gtgattgtca cgctgggtga aaacggcagc
     4321 attgcctggg atggcgcgca gttctggcgt caggctcctg aaccggtgac ggttatcgac
     4381 accatgggtg ccggagattc gttcattgcc ggattccttt gcggctggtc tgcggggatg
     4441 acattaccgc aggcgatggc gcagggaacg gcgtgcgcgg cgaaaaccat tcagtaccac
     4501 ggtgcctggt aggtataacg ttggcgtgag catcttcacg ccaacgtgct gttacttgct
     4561 ggaaaacgac cctataatcc gagtaattca ttctttattt cagggtcgat tatgtcagct
     4621 acggaccgct actctcatca actcctctac gctaccgtcc gccagcgact gctggatgat
     4681 atcgcgcagg gggtttacca ggccgggcaa cagatcccta ccgaaaacga gctttgtaca
     4741 caatataacg tcagccgcat taccattcgc aaagccatca gcgacttagt ggcggacggc
     4801 gtactgatcc gctggcaggg aaaaggcacc tttgtacaaa gccagaaagt tgaaaacgcc
     4861 ctgcttactg tcagtggttt taccgatttt ggcgtctcac aaggcaaggc gacgaaagag
     4921 aaagtgatcg aacaggaacg ggtcagcgcc gcgccgtttt gcgaaaagct gaacatcccc
     4981 ggaaacagcg aagtgttcca tctctgccgg gtgatgtatc tcgataaaga gccgctgttt
     5041 attgatagtt catggatccc gctgtcgcgt tatcctgact ttgatgagat ttacgtcgaa
     5101 ggaagctcca cctatcagtt atttcaggag cgttttgaca cgcgagtggt cagcgacaaa
     5161 aagaccatcg atatctttgc cgccacccgc ccgcaggcaa aatggctgaa atgcgaactg
     5221 ggcgaaccgt tgtttcgcat cagcaaaatc gcctttgatc agaatgacaa accggtgcac
     5281 gtctccgaac tcttctgccg cgccaatcgc atcaccttaa ctattgataa taaaagacat
     5341 taaccgtagg ccggataaga tgcgccagca tcgcatccgg cgatgctggc gcgttgaatt
     5401 ttacatcccg tacgttcccc tcaccctaac cctctcccca aaggggcgag gggaccgttc
     5461 agtacggaat ttagcttgac ggtgctatcc agcattaaat actggcaata ctctcacgca
     5521 aaatccgcag caccgtctct tcaccgctgc gattcgggtt aatgcgaatc gcacaatgtt
     5581 ctgattgtgg attcgcctgg cgaaacgttc cggaaaggcg ataaaagagc ggcgggattt
     5641 catatttcga ctctgcaccc accgggtaag gcaaggcacc gcgcttttgc gcctcttcca
     5701 gcactctggc ggcaatcggc tgatgaaact cgacaatcaa caccttcgac tgcgcattag
     5761 caatcaccgc gcttttcact tccggcaccg caccaccgtt aagcaaagcc agcaaccgtt
     5821 cagatacccc tgcctgcacc gcgtgcatca ctggcgcaaa caccagacaa cgcaatactt
     5881 ccagcgcctg tgcgccctgg atctggctac cgccggagta aagcgtggcg cgaatacggt
     5941 tgataacatc agcatcgccg accactgcac caacaccctc tggcccaaat agcttgaagc
     6001 aggaaaatgt cgagacattc gcgccgcatt cacagccgat tcgcgccacc ttcatcaccg
     6061 catagttgtc atcggttaac gctggaacac ctgccgcgcg caacgttgcc agcacatctg
     6121 ccagcacgta gctgtcctgc ggctgctggc gcgtatgctg caccagcgcc gcatccggtt
     6181 gttgctcgtc gacgacctgc ttcagtgccg acaggtcatt gaaatcaaca gtaataagcg
     6241 tcagccccat ctgctcaaca ataacccgtg tcgtcgggta aacaggcgcg tcatgcacca
     6301 gaagacgctg ccccggtttg agcaaagctg ccagcccggc gcgaatcgcg ccagtccccg
     6361 cgccctgcac cagcgccgca gcctgtgcgt gaaatgcatc agccagcacc tgctccaccc
     6421 gttgggtaat acgcggttga ttcagccccg gcgttaagcc caaatcaccg ctggttagaa
     6481 actccgcgcc gggaaagtga cggcaaatcg tgtccaccag cgcaaactgc ttttgctgcg
     6541 cctcaataag cgtcaggctt tgcagaggaa acgtcttcat aggtgccttc cttaagccgg
     6601 aacgaacagg ccaagccagt aaagaacatt cagcagaata ccggtgatca ttactgccac
     6661 gaccggtgcc gccattttct gtaccggacg gcccagggat tcgttgagga agtaaatggc
     6721 aaccgcgata gagaatccgg tataacccgc catcttaatt gctgcgaaaa tcgaaccgac
     6781 cagcagcgcc acttccatca gcatattcat ggcgttacgg atgttatccg actcattacg
     6841 caccgacggg tagcgtccca gccatttgcc gatagaacga agcagcaaga cttccgccga
     6901 aataaccact gcgcctaata ccgctgcaac catcggattc ggcgagagat agcccaccgc
     6961 ataaacaaag gtaaagcccg caactgcata cacacccgtt gctaaggcgg tggtggcaat
     7021 caacggtaca aaacccagcc cgcgcataaa ttctgccagt gccgcctggt tgatcagcgt
     7081 ttgcgattgt tccggcgtta cgcctgcgga gtacgctttc tccagagtga agatcgacac
     7141 ttcactgccg gcgaaaatct tcatgctggc aacggcggca atcaatgctc ccacgatggc
     7201 gatatagggt aagtttttga taatccgcga cgtgcgttct tcaaacaccg aaagcccgct
     7261 ggcatcaata tcattttcat cacgatgacg caggtcgtga gttatcgcga tccccagcag
     7321 catcaccatg ccaataaaga tttcgatgga ttcaaggtta agatgtggga aatagcgcac
     7381 gactaccaca cgggtcatca gaacaaccac ggcggcgacc agactttgct tccagccaaa
     7441 ctggtagaaa atcgccacca gcggaaacag tgcaaaagca gaaactaccg gcgagcttaa
     7501 ttccccgagg ctacctaata catccaccgg cagcgcggtc agcagctggt ttactggcaa
     7561 caggcaagta aggatcaaca cgccccagat agcgccaaga ccaaacgcca tcaggctgtt
     7621 tatcgccagt acgccgagga tatcggtagg aagaaagagt aaccatgcgt tgagcagcct
     7681 aatgccagtc agttaagcaa ctgactggct ctttttcggg gctgtggggt atttccaggg
     7741 cctctccttt accactctcg ggaaggccct t
//
LOCUS       DAJVUN010000180         7756 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.180, whole genome shotgun sequence.
ACCESSION   DAJVUN010000180 DAJVUN010000000
VERSION     DAJVUN010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7756
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.180"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            595..4008
                     /locus_tag="OQQ76_003398"
     CDS             595..4008
                     /locus_tag="OQQ76_003398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000438152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HCS1969768.1"
                     /translation="MEQSLNFEMLRSQWPELAELACMAERYVHSDPESCLVKLRNYTE
                     LMVRWLYRQERLPEGIKANLYDLMNADVFTSMMPEAIIMKMDALRIHGNRAAHGGRIK
                     AKDTYWLLKEAYLLGIWLYVRYAHGNVDDCPKFTLPPLTQSSGRADEKRLQDAIKAQD
                     ESRERELALQRALQQEQEKAEHLTQRLNEARARNKHVADILSIDEAETRRRLIDSRLL
                     AADWNVGEELKNTDQVTQEHPVKEQPTTSGDGYADYVLWDEAHKPLAVVEAKKTSVNA
                     EQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDHKTHGYPPRRVFGFYSKESLQ
                     YLIQQRETRLPLNRVPHVKDNEGKAVAGRLYQLETIARVSERFTNKYRQSLIVQATGT
                     GKTRVAIALSKLMIDARWVKRVLFLCDRKELRKQAANAFNQFTNEPLYVVGKSKKADR
                     QNARIYIATYPGMMKIMDHFDVGYFDLIIADESHRSIYNVYGDLFKYFDALQIGLTAT
                     PIDMVSKTTFGLFGCEGRIPTANYSLEDAIADNNLVPYEVVTHTTEFLREGIKREKLS
                     DAQIRELEEQGIDPNTLEFDGKALDEAIYNKDTNRYILRNLMENGLKDRDGQLPGKTI
                     IFARNHKHALLLNELFDDMYPQFAGRFCQVIDNYDPRAEQLIDDFKGLDESTNKELTI
                     AISVDMLDTGIDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGYDDNGKPLDKQ
                     KFRIFDHWGNFEYHELHTEEAEVTATKSLAQKRFEAWVMLGAAAQRKFDKQAVDLVAH
                     QLREQINALDEKSIAVQEKWQQKAQYSDEKVLRQLSPKTQQDLLSVLAPLMQWLDVRG
                     QSDAIRFDMDILAAQTARYTNPEELDVLWPIIVEKVERLPPHLAQVQQQGQRINQLRD
                     LSWWKQASLEELEDIRIHLRGIMHLMEKDATPKFGSIQVDITEDANLIQTETRKTNIR
                     SIDFKLYRQQVQGALEPLFQQNPVLKKIRNGEPVTQNELDELAKLVLIQNPNVDIRAL
                     KEFYPQATASLDKLLRTIIGMDSDAVEVRFAQFAADNSLTSQQLRFLSLLKNHIRDYG
                     TIEMRQLFEQPFTHIHNEGVTGVFPDIAQIARLQKIVEELGVVTDAATV"
     gene            4072..5706
                     /locus_tag="OQQ76_003399"
     CDS             4072..5706
                     /locus_tag="OQQ76_003399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HCS1969769.1"
                     /translation="MITGDLKSKIDGLWEDFWVGGITNPLTVIEQITYLMYSRMLDTQ
                     EQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQAD
                     ASKVTLLGNFMKDARLEIVKPSLLTKAVEVIKNLPLDRGDTKGDLYEYLLSKLTTAGI
                     NGQFRTPRHIIRTMVEMMEPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT
                     EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDAP
                     DIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLSAMVKTKKTELL
                     FLARILQMLKVGGRSATIVPQGVLFGSSKAHQSLRKTLVEDNQLEAVINLPSGVFKPY
                     AGVATAILIFTKGGQTDEVWFYDLQNDGYSLDDKRNPIKDNDLPHLLASWKHYRTLRG
                     LPVDNFMGKKLASLLKQQYPEGINAGVDFKDRTQAAFVVPKADIAAQKYDLSINRYKE
                     VVYQAEEYEDPKVILKRLKDLEKEILADLDELEGML"
     gene            5715..6785
                     /locus_tag="OQQ76_003400"
     CDS             5715..6785
                     /locus_tag="OQQ76_003400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001438891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HCS1969770.1"
                     /translation="MVKLGDVINVHYGKALKADQRVSNGSVHVFGSSGIVGNHDKTLC
                     SYPTIIIGRKGSVGAITWAPSGGWIIDTAYYVEIKDNNKLDLRYLFYILSGIDLTKKT
                     ITTSIPGLNRDDLYDTFIKLPPFEEQKRIVDLLDKAEGIRQKREQSIKLADDFLRATF
                     ATMYGNPITNPKKWPVHLMGDIIEFKGGNQPPKSDFIFEPKQGYIRLVQIRDFKSDKY
                     ATYIPQEKAKRIFEVDDVMIARYGPPVFQILRGLSGSYNVALMKASPKENIRKGFIFY
                     LLQLPEYHDVVVKNSERTAGQTGVNLELLNKFNVPLPPIYYQDEILDRLARIEKFKEK
                     IEISLNHLEIQFLSLQKRLMGF"
     gene            complement(6905..7621)
                     /locus_tag="OQQ76_003401"
     CDS             complement(6905..7621)
                     /locus_tag="OQQ76_003401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969771.1"
                     /translation="MLSETKKRIPAHLFRMIKDELYELVLTDDPKGKLYVRDSEKIEE
                     GVSTTEFVVGYGAISMVKKSESMATKGLVGLERVDLIREVVFENGYYDWGCVVNDVLP
                     NICKGNVRIPIFHFLNHAKLINPDGSIINETELSGGVLSRLNITPISFQSQGWDKRRS
                     ETVPEVKVGVNELYLAYDFSFFLRMMPYMEPGLIKRDMGELLKILKKHIDEAMNTQVL
                     SSNFCKLVCIYDYIKNSHRY"
BASE COUNT         2259 a         1765 c         1804 g         1928 t
ORIGIN      
        1 tgtccgttaa actcaggcta cctcagacag tcctgttctc ccaaatatca tggtattgat
       61 acgggagatt atgccgtaca ggtacgacac gttatgtcgt gccaaagggg agtggataga
      121 aaaaatggcg aagatgcgaa aagttgatta atgcattgaa aaaaaatgaa ttaataatga
      181 acttgggtaa aagcgccatc aaaatacgac acgacctgtc gtattttgtg ttagccggga
      241 aaagatatct gctacttact aaaatgattt agtgctgaaa atatttataa gccaataaat
      301 agacaggtat tacggagtaa cgcccaggct attttaacga gcctgctgtt ttattggctc
      361 aaaaaacata tcccatagat gatcagccat acccgcgtta gtgagcaagg tatcccttga
      421 gtagccaggg ctgaagacgc ccattgatgg gcgaaaacca aggttctggc cgttaaagcg
      481 gctatgtcgt taaacacatc accaccatat gccatccggc tcacttcgtc ggccaaatta
      541 gtgtgatatt ctttccagaa tttctgttgt atccacaaca taaggcgatg attgatggag
      601 cagtctctca attttgaaat gttgcgcagc cagtggccgg aactggcaga actcgcatgt
      661 atggcagagc gctatgttca ctccgatccg gaaagctgcc tggttaagct gcgcaactac
      721 accgaattga tggtgcgctg gttgtatcgt caggagcggt tgccggaagg tattaaggct
      781 aatctttacg atttaatgaa cgctgatgtc tttaccagca tgatgccgga agccatcatc
      841 atgaaaatgg atgctctgcg tatccatggc aaccgtgccg cgcacggcgg acgtatcaaa
      901 gctaaagata cttactggct gctcaaagaa gcgtatttgt tgggaatttg gctgtatgtt
      961 cgctacgccc acggtaatgt tgatgactgc cccaaattta cactccctcc attaacacaa
     1021 tcttcaggtc gtgcagatga aaaacgtctg caagatgcaa tcaaggctca ggatgaaagc
     1081 cgtgagcgcg aactggcgct acaacgcgca ctacagcaag aacaggaaaa ggccgaacac
     1141 ctcactcaac gcctgaatga agccagagcg cgtaacaagc atgttgccga tattctctct
     1201 attgatgaag cggaaacccg ccgtcgcctg attgactctc gcttacttgc agccgactgg
     1261 aatgtagggg aagaacttaa aaacacggat caagtcacac aagaacatcc agtcaaagag
     1321 caacccacca cctctggtga cggttatgca gactatgtct tgtgggatga ggcacacaaa
     1381 ccgttggcgg tggtggaagc aaaaaaaacc agcgtcaatg ccgagcaagg acgaattcag
     1441 gcccggctgt atgcagactg gctggaaaaa gaatacggtc agcgtccggt catcttctac
     1501 accaacggct atgatatctg gctgtgggat gaccataaaa ctcatggtta tcccccgcgt
     1561 cgggtgtttg gcttctacag caaggaaagc ctgcaatatc ttattcagca gcgtgaaacc
     1621 cgtctgccgc tgaacagagt gccacacgta aaagataacg aaggtaaggc cgttgccgga
     1681 cgtttgtacc agctcgaaac cattgcccgc gtcagtgaac ggtttaccaa caagtaccga
     1741 caatcgttaa ttgttcaggc tacgggtaca ggcaaaaccc gcgtggcaat tgcactaagc
     1801 aaactgatga ttgatgcccg ctgggtaaaa cgcgtcctgt ttctttgcga ccgtaaagaa
     1861 ctgcgtaaac aggcggcaaa tgcctttaat caattcacca atgagccgct gtatgtggtc
     1921 gggaaatcga aaaaagcaga caggcagaat gccagaatct acatcgctac ctatcccggt
     1981 atgatgaaaa tcatggacca tttcgatgtc ggttatttcg atttgatcat cgccgatgaa
     2041 tcccaccgct ctatctacaa cgtctacggc gatctgttta agtattttga tgccctccag
     2101 attggcctga cggccacgcc aattgacatg gtgagtaaaa ccactttcgg cctgtttggt
     2161 tgtgaaggac gtattcctac cgccaactac agcctggaag atgccatcgc cgataacaat
     2221 ctggttccct atgaggttgt cacacacaca acagaattcc tgcgcgaagg tatcaaacgg
     2281 gagaaattaa gcgacgcaca aatccgcgag ctggaagaac aaggcataga tcccaatacg
     2341 ctggagtttg atggcaaggc gctggatgag gcgatctaca acaaagacac caaccgctat
     2401 atcctgcgta acctgatgga aaatggcctg aaagatcggg acggccagtt gcctggtaaa
     2461 accatcattt tcgcccgtaa ccacaaacac gcgctgctgt tgaatgaatt gttcgacgat
     2521 atgtacccac agtttgccgg gcgcttctgc caggtcatcg acaactacga tccccgcgcc
     2581 gagcaactga ttgatgattt taaagggctg gatgaaagca ccaacaaaga gctgaccatc
     2641 gctatctccg ttgacatgct cgataccggt attgatgtcc cggaaattgt gaatctggtc
     2701 tttgccaaac cggtcaaatc aaaagtgaag ttctggcaga tgattggccg tggtacgcgc
     2761 ctctgtccgg ggttgtacgg ttacgacgat aacggcaaac cgctggataa acagaaattc
     2821 cgcattttcg atcactgggg caattttgag tatcacgagc tgcataccga agaggcggaa
     2881 gtcacagcga caaaatcgct tgcgcaaaaa cgcttcgaag cgtgggttat gctgggggcc
     2941 gctgcgcagc gtaaattcga caaacaggcg gtggatttag ttgctcacca gcttcgcgag
     3001 caaatcaacg cactggatga aaagtcgatt gccgtacagg aaaaatggca gcagaaagcg
     3061 cagtacagtg atgaaaaggt gctgcgccag ctttctccga aaacacagca ggatctgcta
     3121 tctgttctgg ccccgttgat gcagtggctg gacgtgcgcg ggcaaagcga tgccatacgc
     3181 tttgatatgg atattctggc ggcgcaaact gcccgttata ccaacccgga agagctggat
     3241 gttctctggc cgatcatcgt cgaaaaagtg gagcgcctgc cgccgcattt ggcgcaggtg
     3301 cagcaacagg gacaacgaat caatcagctt cgtgatttaa gctggtggaa gcaggccagc
     3361 ctggaagagc tggaggatat tcgcattcat ttgcgcggta tcatgcacct gatggaaaaa
     3421 gacgcgacgc ctaaatttgg ttcgatacag gtggatatta ccgaagatgc gaacctgatc
     3481 cagacggaga cccgcaaaac taatatccgc tcgattgatt tcaaactcta tcgccagcag
     3541 gttcaggggg cgctggagcc gctgttccag caaaacccgg ttctgaagaa aatccgcaac
     3601 ggcgagccag tcacgcaaaa cgagctggat gagctggcga agctggtgct gatccagaac
     3661 cccaacgttg atattcgtgc gttgaaagag ttttatccgc aggcaaccgc cagcctggat
     3721 aaacttttgc gtaccatcat cgggatggac agcgacgcgg tggaagtgcg ttttgcccag
     3781 ttcgccgctg ataacagcct gaccagccaa caactgcgct tcctgtcatt gctgaaaaac
     3841 cacattcgcg attacggcac cattgaaatg cggcagctct ttgaacagcc ttttacgcat
     3901 atccacaacg aaggcgttac cggtgtgttc cctgatatag cgcaaatcgc ccgcctgcaa
     3961 aagatagtcg aagagctggg tgttgtgacc gacgcagcga cggtataata cacgcatgac
     4021 aagccccggc agcggggctt ttgtatttaa aacaggatat aaacgctaac aatgattact
     4081 ggcgacttaa aaagtaaaat cgacggacta tgggaagatt tctgggtggg tggtatcacc
     4141 aacccgctga ccgtaatcga acagatcacc tatctgatgt attcccggat gctggatacc
     4201 caggaacaac gcgacgaaaa gcgtaaacaa atcgcgggta ttgattttaa accgcgtttt
     4261 gcgccagaac agcaggagtt ccgtttcagt cactatagca accttggctc ggatgagatg
     4321 atggaagtgg tgcgcgatgg cgtattccag catttccgtc agctcggcca ggccgatgct
     4381 tcgaaggtga cgctgctggg caactttatg aaagatgctc gtctggagat tgttaagccg
     4441 tcattgctga ccaaagcggt tgaggtaatc aaaaacctgc cattggatcg cggcgacacc
     4501 aaaggcgacc tttacgaata cctgttaagc aagctgacaa ctgccggaat caacggacag
     4561 ttccgcacac cgcgccacat tatccgcacg atggttgaaa tgatggagcc gaacccggcc
     4621 cgcggcgaga cgatttgcga tcccgcctgt ggcaccggtg gttttctggc aaccagctat
     4681 gaatatctgc tggagaagta cagctcgctg gaatccattc atactgagat tggcaccaac
     4741 gaacgtggcg agctggaaga gcaaaaaatc tttaccggcg atctgctgac accgtggcgt
     4801 aaccatgtgg ataacaacat gttccacggt tacgactttg acaccacaat gctacgtatc
     4861 gccgccatga acctgattat gcacggcgtg gatgcgcctg atatccacta tcaggacaca
     4921 atgagccaga gtttcagcac aaacttcccg caggccagta aaaacgcctt caacctgatt
     4981 ctggcgaacc cgccgtttac cggttcactg gacgaggaag atatcgactc cacgctgtcg
     5041 gcaatggtga aaaccaaaaa aaccgaacta ctgttcctgg cgcgtattct gcaaatgctg
     5101 aaagtgggcg ggcgcagtgc cactatcgtg ccgcagggcg tgctgtttgg ctctagcaag
     5161 gcgcaccagt cacttcgcaa aacgctggtg gaagataacc aactggaagc ggtgatcaat
     5221 ctgccttctg gtgtatttaa accttacgct ggcgtggcga cggcgatctt gatctttacc
     5281 aaaggcggtc aaacggatga ggtctggttc tacgatctac aaaatgacgg ctacagcctg
     5341 gatgataagc gcaacccgat aaaagacaac gatctgccgc atctgctggc aagctggaag
     5401 cattaccgta ctttacgcgg gctaccggtt gataacttta tgggtaagaa gttagcctcg
     5461 ttgcttaaac agcagtaccc ggaagggatt aatgctggcg ttgattttaa agatcgcacg
     5521 caggcggcgt ttgttgtacc gaaagcggat attgctgcgc agaaatacga tctatccatc
     5581 aaccgttata aagaagtcgt gtatcaggcg gaggaatatg aagatccgaa ggtgatattg
     5641 aagcggttaa aggatctgga aaaagagatt ctggcggatt tggatgagct ggaggggatg
     5701 ctgtgagttc ggcaatggtg aagttagggg atgttattaa tgttcactac ggaaaagcat
     5761 taaaagctga tcagcgtgta tcgaatggaa gtgtccatgt ttttggtagt tcaggaattg
     5821 tcggcaacca cgataaaacg ctttgcagct atcccacgat aattattggc cgcaaaggca
     5881 gcgttggtgc tattacctgg gctccaagcg gaggctggat cattgatact gcttattacg
     5941 ttgagatcaa agataataat aagttagatc tccgatactt gttttatatt ctgagcggaa
     6001 ttgatctcac taagaaaacg attaccacaa gtattcctgg attaaataga gacgatctct
     6061 atgatacatt tattaaatta ccaccttttg aagagcagaa acgaattgtg gatcttctcg
     6121 ataaagctga gggtatacgc caaaaacgtg agcaatccat caaactggct gatgattttt
     6181 tgcgtgctac gtttgctaca atgtatggga atcctattac aaaccccaaa aaatggcctg
     6241 tccatcttat gggagacatt attgaattta aaggtggaaa tcaaccacct aaaagtgatt
     6301 ttatttttga acctaaacag ggttatatta gattagtaca aattagagat tttaaatccg
     6361 ataaatatgc gacgtacatt ccgcaagaaa aagcaaaacg tattttcgaa gttgatgatg
     6421 ttatgattgc tcgttatggg ccacctgtgt ttcaaatact tagaggttta tccggcagct
     6481 acaatgtagc tttaatgaaa gcttcaccca aagaaaatat taggaagggg tttatattct
     6541 atcttctaca acttccggaa tatcatgatg ttgttgtaaa aaactctgaa agaacagcag
     6601 gacaaaccgg tgtaaatctt gaactattaa acaaattcaa tgttcccctc ccacctatat
     6661 actatcaaga tgagatatta gatagattag ctagaattga aaaatttaaa gaaaaaatag
     6721 aaatatcatt aaatcattta gaaatacaat ttttatcact acagaagaga ttaatgggtt
     6781 tttaaatcct tagtatcgaa ataaacatta atttattata ttaagatatt ttaggaaatt
     6841 aaggcgtcac tcttaggtaa cgcctttttt tactatctcg ccccctaaga aggttatatc
     6901 ttacttaata cctgtgacta tttttgatat aatcataaat acacactaat ttgcaaaaat
     6961 tacttgacaa tacctgagta ttcatagctt catctatatg ttttttcaat attttgagaa
     7021 gctctcccat atcgcgcttg attaatccag gctccatata aggcatcatt cttaaaaaga
     7081 aactgaaatc ataagcaaga tataactcat tgacccccac cttgacctca ggaacggttt
     7141 cagagcgtcg tttatcccat ccttgagact gaaaactaat aggagtgata tttaatcgtg
     7201 ataaaacgcc acctgagagt tctgtttcat taattatact cccatcagga ttaattaatt
     7261 tagcgtgatt taagaagtga aaaataggaa tgcgcacatt gcctttgcat atatttggca
     7321 aaacatcatt aacaacacat ccccaatcat aatatccatt ttcaaataca acctctcgga
     7381 tgagatctac acgctccagt ccaaccaatc ctttagttgc catcgattcc gattttttta
     7441 ccatcgaaat agcaccatat cccacaacaa actcagttgt actgacccct tcttcaattt
     7501 tctctgaatc cctcacatat aattttcctt tcggatcatc agttaagacc aactcataaa
     7561 gttcatcttt tatcattcgg aataaatgtg ctggaatcct ttttttagtt tcactcagca
     7621 cctcaaatat ttctttatag gatggtgcct gaacatattt taccgggatt tttttatgaa
     7681 tcacagaatc actaatatca gcctcttcaa gttcaggttt ccattcaaca aacaataatt
     7741 tattctgtaa aaaatc
//
LOCUS       DAJVUN010000181         7711 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.181, whole genome shotgun sequence.
ACCESSION   DAJVUN010000181 DAJVUN010000000
VERSION     DAJVUN010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.181"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            162..305
                     /locus_tag="OQQ76_003402"
     CDS             162..305
                     /locus_tag="OQQ76_003402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobF family protein"
                     /protein_id="HCS1969772.1"
                     /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK
                     KTI"
     gene            318..527
                     /gene="cspE"
                     /locus_tag="OQQ76_003403"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             318..527
                     /gene="cspE"
                     /locus_tag="OQQ76_003403"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HCS1969773.1"
                     /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL
                     AEGQNVEFEIQDGQKGPAAVNVTAI"
     gene            693..1502
                     /gene="rlmA"
                     /locus_tag="OQQ76_003404"
     CDS             693..1502
                     /gene="rlmA"
                     /locus_tag="OQQ76_003404"
                     /EC_number="2.1.1.187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(745)-N(1))-methyltransferase"
                     /protein_id="HCS1969774.1"
                     /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR
                     SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHA
                     FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK
                     AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY
                     PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY"
     gene            complement(1499..2065)
                     /gene="mntP"
                     /locus_tag="OQQ76_003405"
     CDS             complement(1499..2065)
                     /gene="mntP"
                     /locus_tag="OQQ76_003405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP"
                     /protein_id="HCS1969775.1"
                     /translation="MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG
                     AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRR
                     HGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS
                     IIGKKAEILGGLVLIGIGVQILWTHFHG"
     gene            complement(2493..2951)
                     /locus_tag="OQQ76_003406"
     CDS             complement(2493..2951)
                     /locus_tag="OQQ76_003406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HCS1969776.1"
                     /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR
                     IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFA
                     NVWIEYSLIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLEKIYKFIVSTQ"
     gene            complement(3006..3857)
                     /gene="manZ"
                     /locus_tag="OQQ76_003407"
     CDS             complement(3006..3857)
                     /gene="manZ"
                     /locus_tag="OQQ76_003407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020804907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HCS1969777.1"
                     /translation="MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCF
                     SMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDG
                     AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA
                     TRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSR
                     ITDQTGKEHVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY
                     ACGLLGL"
     gene            complement(3870..4670)
                     /gene="manY"
                     /locus_tag="OQQ76_003408"
     CDS             complement(3870..4670)
                     /gene="manY"
                     /locus_tag="OQQ76_003408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIC"
                     /protein_id="HCS1969778.1"
                     /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG
                     DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL
                     AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL
                     SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA
                     FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD"
     gene            complement(4733..5704)
                     /gene="manX"
                     /locus_tag="OQQ76_003409"
     CDS             complement(4733..5704)
                     /gene="manX"
                     /locus_tag="OQQ76_003409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HCS1969779.1"
                     /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET
                     LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL
                     MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND
                     YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA
                     HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ
                     VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK"
     gene            6167..>7711
                     /gene="yoaE"
                     /locus_tag="OQQ76_003410"
     CDS             6167..>7711
                     /gene="yoaE"
                     /locus_tag="OQQ76_003410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family cation transport protein YoaE"
                     /protein_id="HCS1969780.1"
                     /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD
                     KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT
                     TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA
                     VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI
                     GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPIPE
                     GAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPV
                     CRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGS
                     FVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQQA
                     LDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIVKE
                     QPAHDED"
BASE COUNT         1954 a         1889 c         1920 g         1948 t
ORIGIN      
        1 caatgatata tcggcgcgta ttccgttgca taagtgtgca aaaaaagtgg aagacgtatc
       61 gagatttgtg cgtctgatcg agacatgttt aaaaatggct tgccataatt aacgttgtat
      121 gtgataacag atttcgggtt aaacgaggta cagttctgtt tatgtgtggc attttcagta
      181 aagaagtcct gagtaaacac gttgatgttg aataccgctt ctctgccgag ccttatattg
      241 gtgcctcatg cagtaatgtg tcagttttat ctatgttatg cctgcgggcg aagaaaacaa
      301 tctaaggaat ttttcaaatg gcaaagatta aaggtcaggt taagtggttc aacgagtcta
      361 aaggttttgg cttcattact ccggctgatg gcagcaaaga cgtgttcgta cacttctccg
      421 ctatccaggg taatggcttc aaaactctgg ctgaaggtca gaacgttgag ttcgaaattc
      481 aggacggcca gaaaggtccg gcagctgtta acgtaacagc tatctgatcg aatccactga
      541 tctgaagtgt gaatacgctt caatctcgct ataaagcctc gtcgaatgcg aggcttttta
      601 ctatgcttta tcttcgctcc tggcgttcgg atatttgccc gccgcgtgat tcgcgttaca
      661 cttgcggcct ttagtatcct gccggagttg tcatgtcttt ttcctgtcca ctttgccatc
      721 agcctctttc gcgtgaaaaa aacagctata tctgtcccca gcgacatcag tttgatatgg
      781 cgaaagaagg gtatgtcaat ctgctgcccg ttcagcataa acggtctcgt gatccgggcg
      841 acagcgcgga aatgatgcaa gcacgccgcg cattcttaga tgccggacat tatcagccgc
      901 tgcgtgatgc aattgtcgcc caactgaggg aacggcttga tgataaggcc acggcggtgc
      961 tggatattgg ctgtggtgaa gggtattaca cacacgcatt tgccgatgcg ttgcccgaaa
     1021 tcaccacgtt tggtctggat gtttcgaagg tagcgataaa agcggcggcg aaacgctatc
     1081 cgcaggtcac tttttgtgtc gcttccagcc accgtttgcc gttttccgat accagtatgg
     1141 acgccataat acgtatttac gcgccgtgta aagcagaaga attagcacga gtagtgaagc
     1201 ccggcggctg ggtcattact gccacgccgg gaccgcgaca tttgatggag ctgaaggggc
     1261 tgatttacaa tgaagtacat cttcatgcac ctcatgcaga acaactggaa ggttttacat
     1321 tacagcagag tgcggagttg tgttatccga tgcgtcttcg cggtgatgaa gccgtcgcat
     1381 tattgcagat gacgccgttt gcctggcgtg cgaagccaga agtctggcaa acactggcag
     1441 caaaagaagt gttcgactgc cagacggact ttaatattca cctctggcag cgttcttatt
     1501 aaccgtggaa gtgcgtccag aggatctgga cgccgatgcc gatcagtacc agcccgccga
     1561 gaatttccgc ttttttccca ataattgagc cgataaagcg accaaccatc atccctaatg
     1621 ttgacataat caaggttgca caaccaatgg ccaatgcggt cgcgataatg ttgacctgca
     1681 ggaaagcaag accaacaccc acagccatgg catccaggct ggtggcaatc gcggtggtta
     1741 ccagtagcca gaaaccgtgt cgacggcgcg gctcttcatc ttcatcatct gcgccacgaa
     1801 aaccctcaat aatcattcgc ccgccgagga atatcagcag cacaaacgca atccagtggt
     1861 tccattcaag gacaaaccgg ctggctaaca tgcccattcc ccagccgatc agcggcgtca
     1921 gggtttcgac ggcaccaaaa ataaggccgg ttcgcaatgc ttcagaaaat ttcggtttat
     1981 ggagggtggc acctttaccg attgatgcag caaatgcatc catcgacata ccaaacgcaa
     2041 gaagaacagt agcagtgata ttcatgacaa tgtcctgacc ggggtatcca taaaacacat
     2101 catcgccccc agcaaacatg catacatgaa caacaagccg tgatggtttt cgcgttcatg
     2161 caggcatagc gattgatgtg catatggtct cgcctgactg aaagtattca gtccgtacgt
     2221 gccacgtttt gcaacgagta tgttgacacg tacatttccg gaatctggaa atcggctact
     2281 ccccaaatga gggcgcaacc ttaacatatt ttgagaatat aaaacaactg ttggaatata
     2341 ttatttcatt gctttattga taacgaattc atttagattt atatatcaat gaaacgttaa
     2401 aataaataac aaataaggga agaggtaata tagcctaagc tatgtctgat tattaaaaat
     2461 acactaaaca tagctttggc taaattcata acttattgag ttgaaacgat aaacttataa
     2521 attttttcca gattgtcgat atttcgaacg cggattaaca gccgacgctg ttctaattgc
     2581 atcaccaaca cgccatcttc cgacaagttc atcgctttga ttaggctata ttcaatccag
     2641 acattggcga agaaaaaacc tttttgttta aagatgatct tcggaacgcg gatccagaat
     2701 atataaaaac ccatcagagc cagtgcgctt aataaccatg tcgttattaa cgcaccatga
     2761 ttcgtgacgt tgttatagat aagaatgaca atcaatccga cgaagataac gctatcgatg
     2821 cgaccacgcc ggagcaaagg aattgccagc agggtggggc cgttacggcg gggcatgatg
     2881 aactgatcgt agatcgcgaa ggccaggagt gcggcgatga aaagaatcag taccaggtcc
     2941 gtgattgtca ttaatcctcc agataaaaaa acggggccaa aaggccccgg tagtgtacaa
     3001 cagtcttaca gtcccagcag gccgcaagcg taaccagcga taccgatgac gaagaagcca
     3061 acgatgatcc acagcgggtt aacttttttg cgcagtagcc acatacaagc aaaggtcagc
     3121 agcagtggta ccaggcctgg cattaactgg tccagaatag tctggacagt agtaacgtgt
     3181 tctttgcccg tctggtcagt aatgcgagag acaaccagcg ggatgttgac atgtgtccac
     3241 ttgttaacca atgcccccat gacaaacagg ccgaggatag acgccccttc cgtcagtttt
     3301 tgcaggaagc caccacccat atctttaacg atatcgatac ctttggagta accatacgct
     3361 acgccgtagt aacgggttgc cagacgcacc aggttaaaca ggatgaagaa cagcagcgga
     3421 cctaacaggc tgccgctcat cgcgataccg gcacccagtg ctgcaaatac cggacgtacg
     3481 gttccccaga agatcgggtc gcctacacca gccagcggcc ccatcaaacc gactttgata
     3541 ccgttgatag caccgtcgtc gatctctgcg ccattagcac gctgttcttc cagcgccagg
     3601 gttacgccga gaatcggcgc agccacgaac ggctgggtgt taaagaactc caggtgacgg
     3661 cgaatagctt gtttacgagc ttcgttgttc tcagggtaga ggcgacgaat tgccggtacc
     3721 atagagaagc agaaacccag tgcctgcata cgttcgaagt tccatgaacc ctggaagagg
     3781 ttagaacgca ggaagacgcc acgaatatca ctttgagtga gttttttctc ggtggtagtt
     3841 tgagttgtat caaccatttc gctcacctgt tagtccagtt cattatcgag atcgttgtta
     3901 ccagcagcct gagcaggcgc accggctacg cggttgtatt tcgggctaag ttggatgtag
     3961 agcactgcca taacagtacc gatcacaccc agagcaacca ggttaaagtt ggtgaatgct
     4021 gcggttacga agccgaggta gaagaacggc atcaggtagc cagcacgcat catgttgata
     4081 accatcgcat aaccaaccac cacgatcatg ccaccggcga tattcagacc attggtcacc
     4141 acttccggaa tcgcattcag catgttctgt acttcgctgg taccaacaga cagcgcaacg
     4201 atgacggccg gaatagccac acgcattgct tgcaggaaca gagaagaaac gtggatccag
     4261 gaaatcgctg tcaggttgcc gttatcagca gccttatccg cagcgtgctg gaaagcaacg
     4321 gtaatagtac gaacgatgat ggtcagtacc tggcccgcag cggccagagg gattgccagt
     4381 gcgatacctg caccaatgct ctgatgacct gcgataacca gaatggtaga aatgatagaa
     4441 gccagagcgg cgtcaggcgc aactgcagca ccgatgttca tccagcccag cgcgatcatt
     4501 tccagcgtac caccgataat aataccggtt ttcatatccc caagaacgat acccaccagg
     4561 gtacacgcga ttagcggacg gtgaaactga aattcatcga ggattgatcc catacctgcg
     4621 atacaggcta cgataaatac cagcacaatt tgaagagtgg taatctccat tgtacttctc
     4681 ctgtttacgt aagacttaag tgtgaaaact gagtgataat caacacaata cgttacttat
     4741 cgattttgct gatcagatcc atcattttca gtttcggatc ggtggaaacc ttacggactt
     4801 ccagctcaat accgcgcgca ttcagtttct tgaacgcctc gatatctttt tcatcaaccg
     4861 aaaccgcgtt attcacctgg gttttacctt gacggaatgc cataccaccg acgttaacag
     4921 aggtgatttt cacgccgcct tcaacgagac gctctacatc tgttgggttg gtaaataaca
     4981 gcattacgcg ttcgccagca tatttcgggt tgttgtagac gcgaatcatt ttggcaacat
     5041 caactacgtg tgctgttacg cccggaggtg caacctgggt gagcagtgtc ttacgaacgg
     5101 tatccgcagc cacttcatca ctaacaacaa taatacggga gacattggtt tctttggtcc
     5161 agcgggtggc gacctgaccg tgaatcagac ggtcgtcgat acgcgcaagg ccaataacca
     5221 tgtagtcgtt tggccccatt ggttttgccg gagttggagc cgcttttggt gctgcggcag
     5281 cgggtgctgg cgcggctttt tcaaccggtt tggctttcag tgctttcacg ccttcacggc
     5341 ctgtttctac tgccagcgca accagttcat caaagcttgg gtcatcatca cgagccatta
     5401 acgtttccac gagcattgga atgttaacgc ctgcaatgac ttcataatgc tctttgtcga
     5461 cgacaatgcg gctggcagca ttgaacgggc tgcctcccca tgtatcaacg agaaacagca
     5521 cgcctttagt ggtgtcgagt tttgccaact gagcgttgta cttttcaatc agcgtttcgg
     5581 cattttcacc tggaacgaaa tcgatccagc cgacgttttc ctgctcgcct aacagcattt
     5641 ctgccgtttt aagcaactgc tctgcagccc aaccatgtgt gcctataaca atagcaatgg
     5701 tcacttgcta cctcctttat tatcgttaac acctcaacgt gccagatgta tttttgaatc
     5761 gtcgtccaca atcgaatcga ttcagataag ggctacaacc aaaaacccct gcgtttcgcg
     5821 atttatttta gatatcgaaa aaattatttt atgtgatgaa gatccgtaat ttaactttcg
     5881 attagcagaa atttcgaaag gtaaaatatc cttgtcacat tcgtttgcaa aggaaggtaa
     5941 atctttgcca aatcagaggc gtctctgata tgtttaactc ccgtttaaca accatggagt
     6001 atagggcagt agcccgcagt atggatcgtc accgacgtca tttcagcatc aggcctttta
     6061 acgcctgcct ttctggcact ctatgccgca cctttcgttt gcattttgtc gttacgcctg
     6121 cattatttct ggcgtcgaat agctattcct taagcaggag cttgtcatgg aattcttaat
     6181 ggacccctca atttgggcgg ggctactcac gcttgttgtt ctcgaaattg tgctgggtat
     6241 cgataacctg gtcttcatcg ccattcttgc tgacaaactg ccgccaaaac aacgcgataa
     6301 agcgcgtttg ctggggttat cactggcgct gattatgcgt ctggggctgc tgtcgctgat
     6361 ttcatggatg gtcacgctga ccaaaccgct atttaccgtc atggatttct ccttctccgg
     6421 acgcgacctg attatgttgt tcggggggat attcttgctg ttcaaagcaa caaccgaact
     6481 gcatgaacgg ctggaaaacc gcgatcatga ttccggccac ggtaaaggct acgccagttt
     6541 ctgggtggtc gtcacacaga ttgtcatcct tgacgccgtc ttctcgttgg atgcggtaat
     6601 tactgcagta gggatggtta accatctgcc ggtgatgatg gcggcggtag tgattgcgat
     6661 ggcggttatg ttgctggcat ccaaaccgct gacgcgattc gttaaccagc accccacggt
     6721 ggtggtgctc tgtctgagct tcctgttaat gattggtctg agtctggtgg cagaaggttt
     6781 cggtttccac attccgaaag gttacctgta tgccgcgatt ggcttctcga tcatcatcga
     6841 agtgtttaac cagattgcgc gtcgcaactt tattcgccac cagtcgactt tgccgctgcg
     6901 agcgcgtact gccgatgcca tcctgcgttt gatgggcggg aaacgtcagg ccaatgttca
     6961 gcacgatgcc gataacccga tgccgatccc ggaaggtgca tttgccgaag aagaacgtta
     7021 catgattaac ggcgtactga cgctggcgtc gcgttctctg cgcgggatca tgacgccgcg
     7081 cggtgaaata agctgggttg acgctaatct cggggtcgat gaaatccgcg agcaactgct
     7141 ctcttcaccg cacagtctgt tcccggtatg tcgcggtgaa ctggatgaaa tcatcggtat
     7201 tgtacgtgct aaagaactgc tggtggcgct ggaagagggc gttgatgtgg cggcgattgc
     7261 ttcggcgtct ccggcgatta tcgtcccgga aaccctcgat ccgatcaacc tgttgggcgt
     7321 gctgcgtcgt gctcgcggga gctttgttat cgtgaccaac gagtttggtg tggtacaagg
     7381 tctggtcacg ccgctggatg tgctggaagc cattgcgggt gaattcccgg acgctgacga
     7441 aacgccggaa atcattactg atggtgacgg ctggctggta aaaggcggta cagatttgca
     7501 tgccttgcag caggcgcttg atgttgagca ccttgccgat gacgatgata tcgcgacggt
     7561 cgcgggcctc gtgatctcgg caaatggtca cattccccgt gtgggcgatg tgattgatgt
     7621 agggccactg catatcacca tcattgaagc caatgattat cgtgttgatc tggttcgcat
     7681 tgttaaagag caaccggcgc acgatgaaga t
//
LOCUS       DAJVUN010000182         7668 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.182, whole genome shotgun sequence.
ACCESSION   DAJVUN010000182 DAJVUN010000000
VERSION     DAJVUN010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7668
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.182"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            629..1399
                     /locus_tag="OQQ76_003411"
     CDS             629..1399
                     /locus_tag="OQQ76_003411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HCS1969781.1"
                     /translation="MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMD
                     SVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINIHVVTEVQHIVILAEHHLLDYKGV
                     EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAVITFFASTAAMYIRQLLAQ
                     RHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMF
                     KGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV"
     gene            1390..1863
                     /locus_tag="OQQ76_003412"
     CDS             1390..1863
                     /locus_tag="OQQ76_003412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418783.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HCS1969782.1"
                     /translation="MGVIEFLFALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGAI
                     GHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA
                     YTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV"
     gene            1971..2510
                     /gene="dnaT"
                     /locus_tag="OQQ76_003413"
     CDS             1971..2510
                     /gene="dnaT"
                     /locus_tag="OQQ76_003413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaT"
                     /protein_id="HCS1969783.1"
                     /translation="MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYA
                     VTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFI
                     RLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK
                     RDVNTVSEPDSQIPPGFRG"
     gene            2513..3250
                     /gene="dnaC"
                     /locus_tag="OQQ76_003414"
     CDS             2513..3250
                     /gene="dnaC"
                     /locus_tag="OQQ76_003414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein DnaC"
                     /protein_id="HCS1969784.1"
                     /translation="MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAAL
                     ERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASF
                     IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL
                     SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM
                     DRMRLGNSLWVIFNWDSYRSRVTGKEY"
     gene            3299..3793
                     /locus_tag="OQQ76_003415"
     CDS             3299..3793
                     /locus_tag="OQQ76_003415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2501 domain-containing protein"
                     /protein_id="HCS1969785.1"
                     /translation="MMKTVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNS
                     TTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLE
                     KLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGL
                     NFIS"
     gene            4047..6338
                     /gene="opgB"
                     /locus_tag="OQQ76_003416"
     CDS             4047..6338
                     /gene="opgB"
                     /locus_tag="OQQ76_003416"
                     /EC_number="2.7.8.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol--membrane-oligosaccharide
                     glycerophosphotransferase"
                     /protein_id="HCS1969786.1"
                     /translation="MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNIT
                     LFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRHRR
                     HHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDP
                     KLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVAS
                     QCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKS
                     HGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVD
                     THHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIAAFINKIKASPWFKDTVIVVS
                     SDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNY
                     LGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGS
                     HFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELA
                     LSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRY
                     KADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITA
                     KAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGN
                     ILGHSPRKLGIGMVEIKVVEREG"
     gene            complement(6477..7499)
                     /gene="lgoD"
                     /locus_tag="OQQ76_003417"
     CDS             complement(6477..7499)
                     /gene="lgoD"
                     /locus_tag="OQQ76_003417"
                     /EC_number="1.1.1.414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-galactonate oxidoreductase"
                     /protein_id="HCS1969787.1"
                     /translation="MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDI
                     HAWGGNQPFFSYPRVLGHEICGEIVRLGKNIADLKNGQQVAVIPYVACQQCPACKSGR
                     TNCCEKISVIGVHQDGGFSEYLGVPVANILPADGIDPQAAALIEPFAISAHAVRRAAI
                     APGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDF
                     DAQLQAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHK
                     KETTMMGSRNATPEDFAKVGRLMAEGKITADMMLTHRYPFATLAETYERDVINNRELI
                     KGVITF"
BASE COUNT         1970 a         1970 c         1855 g         1873 t
ORIGIN      
        1 ctggcaacat atttcctcca catccactgt ctaaaaatca tgatggttta ttcaggatat
       61 tcattcctta aatgtttcca gcaaattaat agattaagcg aataaattat ccttagcatt
      121 cactttcata tcagcatact cctgctgcac aacaactcca ctgcatgtgt cagaaggtta
      181 gcatcaaatg ataacctggt gaaatagcct ggagacattt aaaatatcta cattaagttg
      241 ttaggaatac ttaatgaaaa acagaaatca cattcattta atttataatt aaatgatatc
      301 ccttcccgca gaatgaaaaa tcacacaacc aatatttatt caatgaaatc tgatggtttt
      361 aacttgttaa cattaaaaaa cgtgcccggt tatctattat cctgattcgt aaaggccaaa
      421 caataaattc attatagtga taatattcat gtgatagttt gtttgcggcg agagataatt
      481 cgctttttat caccgagctt gtcccgataa ccaggattaa tcagcgcaat tttgatctta
      541 acctaccgca aaacaaccgt gcttcatgat acaaatggat tctcattatc tgaacaatac
      601 gcagcacgtc tatgacaaag ggcgagttat gcaaactgag caacagcgag ccgtaacacg
      661 gctttgtatc cagtgtggat tatttctttt gcaacatggt gcggaaagcg cgttggttga
      721 tgagctttcc tcacgactgg gtcgggcgtt ggggatggac agcgtcgaaa gttctatctc
      781 ttcgaacgcc atagtgctga caaccattaa agatgggcaa tgcctgacat cgacacgtaa
      841 aaatcacgat cgcggcatta atatacatgt ggtgactgaa gtccagcaca ttgtgattct
      901 ggcggagcac catctgctgg attacaaagg cgtagagaaa cgatttagcc aaattcagcc
      961 attacgttac ccaagatggc tggtagcctt aatggttggc ctttcttgcg cctgtttctg
     1021 caaactcaat aaaggtggct gggatggtgc cgtcatcacc ttctttgcca gtacggccgc
     1081 gatgtatatc cgccagctgc tggcacaacg tcatcttcat ccgcagatca acttttgcct
     1141 caccgctttc gccgccacca ccatttccgg attgcttttg caacttccca ctttcagcaa
     1201 tacacccact atcgcgatgg ccgccagcgt tctgctgctg gtgccgggat ttccgttgat
     1261 taatgccgtc gccgatatgt ttaaaggcca catcaatacc ggactggcac gctgggcgat
     1321 cgccagtctg ctgacactgg ctacctgcgt cggcgtggtg atggcactga cgatttgggg
     1381 gctacgcgga tgggtgtgat cgagtttctg tttgcattgg cgcaggatat gatcctcgcc
     1441 gccattccag cggtcggctt tgcgatggtg ttcaacgttc ccgttcgggc attacgctgg
     1501 tgtgcgctgc ttggcgcgat tggtcatggt tcacgaatga tcttaatgac cagcgggctg
     1561 aatattgagt ggtcaacctt tatggcctcc atgctggtcg gcaccattgg tattcaatgg
     1621 tcgcgctggt atctggcgca tccgaaagtg tttaccgtgg cggctgttat ccctatgttc
     1681 ccgggcatat cggcttatac cgcaatgatt tcggcggtaa aaatcagcca gttaggttac
     1741 agcgaaccgt tgatgattac cctgttaacc aactttctta cagcttcatc gattgttggt
     1801 gcgttatcca tcggtctttc cattcctgga ttatggttgt accgcaagcg ccctcgcgta
     1861 taaaattgcc tcgcttaaag cacacggatg agagacagcc tcctctcctc cgtgtgttac
     1921 tataaaagtt atctcccttc tcgttcatcg ttccatattt gagaaacagt atgtcttcca
     1981 gagttttgac cccggacgtc gttggtattg acgccctggt acacgatcac caaaccgttc
     2041 tggcaaaagc tgaaggcggt gtggttgccg tatttgctaa caatgccccg gcgttttatg
     2101 ccgtcacgcc tgcacgcctg gctgaactgc tggcgctgga agaaaagctg gcgcgtccgg
     2161 gaagcgatgt cgctctggac gatcaactct atcaggaacc gcaagccgct cccgttgctg
     2221 tacccatggg gaaattcgcc atgtatccgg actggcaacc cgatgccgat tttatccgcc
     2281 tggcggcgct atggggtgtg gcactaagag agccggtgac caccgaagaa ctggcctcat
     2341 tcattgccta ctggcaggcg gaaggtaaag tctttcacca tgtgcagtgg caacaaaaac
     2401 tggcgcgcag cctgcaaatc ggtcgtgcca gcaacggcgg actgccgaaa cgagatgtga
     2461 atacggtcag cgaacctgac agtcaaattc caccaggatt cagagggtaa cgatgaaaaa
     2521 cgttggcgac ctgatgcaac gcctgcaaaa aatgatgcct gcccatatca aacctgcatt
     2581 caaaacgggt gaagaactac tggcctggca gaaagaacaa ggagcgatcc gctccgccgc
     2641 tctcgaacgt gaaaatcggg cgatgaaaat gcagcgcacc tttaaccgct ccggtattcg
     2701 gccactgcat cagaactgct cctttgagaa ctatcgcgtt gagtgtgaag ggcagatgaa
     2761 tgcgttaagc aaagcgcgcc agtacgtcga agagtttgac ggcaacatcg ccagcttcat
     2821 cttttctggt aagccaggaa ccggcaaaaa ccatctggcg gcggcaatct gcaacgagct
     2881 gctgctacgc ggtaaatccg tattgatcat caccgtggcc gatattatgt cggcgatgaa
     2941 agataccttc aggaatagcg gtaccagtga agaacaactg cttaacgatc tgagcaacgt
     3001 tgatctgctg gtgatcgatg agatcggcgt gcagaccgaa tcgaaatacg aaaaagtgat
     3061 catcaaccag atcgtcgatc gccgctcttc ttccaaacgc ccaaccggga tgctgaccaa
     3121 cagtaatatg gaagagatga ccaagttgct gggcgaacgc gtgatggacc gtatgcgcct
     3181 gggtaacagt ttgtgggtga tcttcaactg ggatagctac cgtagccggg taacaggtaa
     3241 agagtattaa tccccgtttc tggcggtata ctgcgacaca attccacctt gagtaatgat
     3301 gatgaaaact gttaaacatc ttctgtgctg tgccattgcc gccagcgcat taatttccac
     3361 cggggtgcat gctgcgtcct ggaaagatgc gctctccagc gccgccagcg aacttggcaa
     3421 ccaaaacagc acgacacagg aaggcggttg gtcgctcgcg tcattaacta acttgcttag
     3481 cagcgggaac caggccttaa gcgcagataa catgaacaac gccgcaggca ttctgcaata
     3541 ctgcgcgaag caaaagctgg cgtcggtaac cgatgccgaa aacatcaaga accaggtgct
     3601 ggaaaagctg ggcctgaaca gtgaagagca aaaagaagac accaactatc tggatggcat
     3661 tcagggtttg ctgaaaacca aagatggtca gcaactcaat ctggataaca tcggaacgac
     3721 tccgctggca gaaaaggtga aaaccaaagc ctgcgatctg gtgttaaagc aggggctgaa
     3781 cttcatttcc tgaaccgcga aacgccgcgt tttagctgtt acccggctga cgcggctctc
     3841 tcctgccctt ttccctgctt ctggacgatt ttccccctgt tacacgggaa gcgaccgcga
     3901 tcaaaaaagt ctgtttataa actaattcct aacaacatcg catttttttg acactagaat
     3961 tgcagcaata tggcgacgcc attacattgt tcttctcaaa aagcttaaac gttggctaaa
     4021 cggcccggtt tagtgaggat cgcccgttgt cagaactact ctctttcgcc ctttttctcg
     4081 cctctgtgct gatttacgca tggaaagcgg gacgtaacac ctggtggttt gcagccacat
     4141 taacggtgct ggggctattt gtcgttttaa atatcaccct gtttgccagc gactatttta
     4201 ctggcgatgg tattaacgac gcggttctct ataccttaac caacagcctg accggtgctg
     4261 gcgtcagcaa atacatcctg ccgggtatcg gcattgtgct ggggctgaca gcggtgttcg
     4321 gtgcgctggg ctggatcctg cgccatcgtc gccatcatcc gcaccatttt ggttacagcc
     4381 tgctggcgct cttactggcg ctgggttcgg tggacgccag cccggcattt cgtcagataa
     4441 cggaactggt gaaatcccag tcacgcgatg gcgacccgga ctttgcggct tattataaag
     4501 agccgtcgaa aactatccct gacccgaaac tcaacctggt ttatatctac ggcgaaagtc
     4561 tcgagcggac ctattttgat aacgaagctt tcccggatct cacgcctgaa ctgggcgcgt
     4621 tgaaaaatga aggcctggat ttcagccaca cgcagcagct gccaggaacg gattacacga
     4681 ttgcgggcat ggtggcttct cagtgcggca taccgctgtt tgcccccttt gaaggcaacg
     4741 cctccgcctc tgtctccagc ttcttcccgc agaacatctg tctgggcgat atcctgaaaa
     4801 actcgggtta tcagaactat ttcgtgcagg gcgcgaatct gcgttttgcc ggtaaagatg
     4861 tgttcctgaa gtcgcatggc ttcgaccact tatacggctc agaagagctg aaaagcgtgg
     4921 tggccgaccc gcactatcgc aacgactggg gattctacga cgataccgtt ctcgatgaag
     4981 cgtggaaaaa gtttgaagag ctttcccgct caggtcagcg attctcactg tttaccctga
     5041 cagtcgatac ccatcacccg gatggtttta tctcgcgtac ctgtaaccgc aaaaaatatg
     5101 attttgacgg taagccaaac cagtcattca gcgcggtaag ttgcagccag gagaatatcg
     5161 cggcgtttat caacaaaatc aaagcgtcac cgtggtttaa agataccgtc atcgtcgtct
     5221 cttctgacca tttagcgatg aacaacacgg cgtggaaata cctcaataag caggatcgca
     5281 ataacctgtt ttttgtcatt cgtggcgaca agccgcagca agagacgctg gcagtgaagc
     5341 gtaacacgat ggataacggc gcgacggtgc tggacattct cggtggcgat aactatctcg
     5401 gacttggtcg tagcagttta tccgggcagt cgatgtcgga aatcttcctc aatatcaaag
     5461 agaaaacatt ggcgtggaag ccggatatca tccgcctgtg gaaattccct aaagagatga
     5521 aagagttcac catcgaccag cagaaaaaca tgattgcctt ctcgggtagc catttccgtt
     5581 tgccgctgct gttgcgggtt tcagacaaac gcgtggaacc gctgccggaa agcgaatact
     5641 cagcaccgct gcgtttccag ctggccgatt tcgctccacg cgacaatttc gtctgggttg
     5701 accgttgcta taagatggca caactctggg ctccggaact ggcactctcc accgactggt
     5761 gtgtctcgca agggcagctt ggcggtcagc aaattgttca gcatgttgac aaaacaacat
     5821 ggcagggcaa aacggcattt aaagatacgg tcatcgacat ggcgcgttat aaaggcaatg
     5881 tcgatacgct gaaaattgtt gataacgata ttcgctacaa agccgacagt ttcatcttca
     5941 acgtcgccgg tgcgccagaa gaggtgaaac agtttagtgg gatttcccgt ccagagtcgt
     6001 ggggccgctg gtccaacgcg cagctgggcg atgaagtaaa aatcgagtac aagcatccgc
     6061 tgccaaagaa atttgacctg gtgattaccg ccaaagcata cggcaataac gccagccgtc
     6121 ctattccggt acgcgtaggc aatgaagaac aaacccttgt gctgggcaat gaagtgacca
     6181 ccaccacact gcatttcgat aacccaaccg atgccgacac actggtaatt gtgccgccgg
     6241 aacctgtctc aaccaacgaa gggaatatcc tcggacactc gccgcgtaag ctcgggatcg
     6301 gcatggtgga aattaaagtg gtggaacgtg aaggataatt cctgactgat gtgtaggtcg
     6361 cataaggtgc gacctacaca ccttctgcgg cctacaaaac atcattgaga aacagaaaaa
     6421 aacagcgccc aacacttccc cggacgctgc atggcaactt taataatctc gccttatcag
     6481 aaagtaatta cacccttaat caactcacga ttgttaatca catcgcgctc gtaggtttct
     6541 gccagcgtgg cgaacggata gcgatgggtt aacatcatgt cagcagtgat ttttccttcc
     6601 gccatcagtc gaccgacttt agcaaaatct tccggcgtgg cgttgcggct acccatcatc
     6661 gtcgtttctt ttttatggaa ttccggatcg gagaactgca actcaccttt aaacaggccg
     6721 acaaatacca ccgtgccgcc gtgacgaatc aaattcacgg tgttattcat cgcatgttga
     6781 ttacctgtcg cgtcgatcac tttctgcgcc agcgaaccac caaactgcgc ctgtagctgc
     6841 gcgtcaaaat cttcggctga cgggtccagt aaaggtaatt ccagacgcgt tgccacatgt
     6901 tcacggcgcg ccggactggt atccgccacc accacctgtg cgccatcggc tttagcgatt
     6961 gccgccgcgc ccagaccgat tggccccgcc ccgaccacca gcacctgctc gccgggagca
     7021 atggctgcgc gacgcaccgc atgagcgcta atagcgaaag gttcaatcaa tgctgccgcc
     7081 tgcgggtcaa taccgtctgc gggcaaaatg ttcgccaccg gcacgcccaa atactcacta
     7141 aaaccgccat cctgatgcac gccaatgact gaaatttttt cacagcaatt ggtacgcccg
     7201 cttttacacg ccgggcattg ctgacaggca acataaggga tcacagcaac ttgctgacca
     7261 tttttaagat cagcaatatt tttacccagc ctaacaatct ccccacatat ttcatggcct
     7321 aaaacacgtg gataactaaa aaatggttga tttccacccc aggcatgaat atcggtaccg
     7381 caaatcccga cagacttaat ttttattaat gcttcattgt cacccggaat aggtatctcg
     7441 cgttgtttcc agactaattc tttcggctgc tggcaaatta aaacattcat cgtagacatg
     7501 attcggctct ccattttttg ttgccttaga tatcaatgaa aatgaaaaat ggcggcggaa
     7561 cggaaaatct gttttgtgaa aacacacgca taaaaatgtt ttaaatcggg ttttaatgga
     7621 ctcacaagga ggaaaatatg agtcgttcac aaaatttacg ccacaatg
//
LOCUS       DAJVUN010000183         7648 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.183, whole genome shotgun sequence.
ACCESSION   DAJVUN010000183 DAJVUN010000000
VERSION     DAJVUN010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7648
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.183"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..139)
                     /locus_tag="OQQ76_003418"
     CDS             complement(<1..139)
                     /locus_tag="OQQ76_003418"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969788.1"
                     /translation="MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGEVT
                     SG"
     gene            367..975
                     /locus_tag="OQQ76_003419"
     CDS             367..975
                     /locus_tag="OQQ76_003419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HCS1969789.1"
                     /translation="MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFN
                     PLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMD
                     AGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
                     AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA"
     gene            1073..2464
                     /gene="selA"
                     /locus_tag="OQQ76_003420"
     CDS             1073..2464
                     /gene="selA"
                     /locus_tag="OQQ76_003420"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HCS1969790.1"
                     /translation="MTTETRSLYSQLPAIDRLLRDSSFLSLRDTYGHTRVVELLRQML
                     DEAREVIRDSQTLPAWCENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAE
                     AAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLM
                     LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNEN
                     TALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEP
                     MPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEIIARLQSHPLKRALRADKMTLAAL
                     EATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLS
                     QIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRC
                     LEDEQRFLEMLLK"
     gene            2461..4305
                     /gene="selB"
                     /locus_tag="OQQ76_003421"
     CDS             2461..4305
                     /gene="selB"
                     /locus_tag="OQQ76_003421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HCS1969791.1"
                     /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY
                     WPQPDGRVPGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT
                     GNPMLTVALTKADRVDEARVDEVERQVKDVLREYGFAEAKLFITAATEGRGIDALREH
                     LLQLPGREHASQHSFRLAIDRPFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRV
                     RALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQTHT
                     PLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVLRDISARNTLAG
                     ARVVMLNPPRRGKRKPEYLQWLASLARAQNDSEALAVHLQRGAVNLPDFAWARQLNGE
                     GMRELLQQPGYIQAGYSLLNAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMAL
                     PMEDEALVLLLIEKMRESGDILSHHGWLHLPDHKAGFSEEQQAIWQKAEPLFGDEPWW
                     VRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS
                     TCAADFRDRLGVGRKLAIQILEYFNRIGFTRRRGNDHLLRDALLFPEK"
     gene            4495..5646
                     /gene="yiaY"
                     /locus_tag="OQQ76_003422"
     CDS             4495..5646
                     /gene="yiaY"
                     /locus_tag="OQQ76_003422"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine dehydrogenase"
                     /protein_id="HCS1969792.1"
                     /translation="MASSTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDSMLTK
                     LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHD
                     CAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIK
                     MAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALK
                     AVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAYQLGGFYNLP
                     HGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKV
                     DIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVAIYRAAM"
     gene            5811..7349
                     /gene="aldB"
                     /locus_tag="OQQ76_003423"
     CDS             5811..7349
                     /gene="aldB"
                     /locus_tag="OQQ76_003423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase AldB"
                     /protein_id="HCS1969793.1"
                     /translation="MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQN
                     LTPVTGQLLCEVASSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLE
                     LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP
                     LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIVGDLLPPGV
                     VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI
                     FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI
                     RSGNPLDSVTQMGAQVSHGQLETILNYIDIGKKEGADVLTGGRRKLLEGELKDGYYLE
                     PTILFGQNNMRVFQEEIFGPVLAVTTFKTMEEALELANDTQYGLGAGVWSRNGNLAYK
                     MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP
                     LGLF"
BASE COUNT         1810 a         1916 c         2131 g         1791 t
ORIGIN      
        1 ggccggacgt cacttcgccg gggcacaccg aacaggccac gccggtgggg gcaccaatgc
       61 gcactccggc tgaaccctga acaatgctac cgccatactg cgtcatgtcg ccctgacgcg
      121 ctgccggttt tccgctcatt tctcatcctt gttttatcgg gttatttgtc tgctgacagg
      181 caaaacccta cagatttata agaaagcctg aagtgagata tccatcagag tgaaataatt
      241 aggaaaatat ttatatcacc atgataaata tgtgatttat ttggaagtaa caaaccatca
      301 acattttctg ccctttttcc catcaccagg ccatactgat atttttcctc gcacaaagga
      361 ctcggcatga aactcgtcgg tagctacacc agcccgtttg tacgcaaact ttctattctg
      421 ttgttagaaa agggcataac tttcgaattt attaatgaac tgccctataa cgcggacaac
      481 ggcgtggcgc aatttaaccc gttaggaaaa gtgccggtgc tggtgaccga agagggcgaa
      541 tgctggtttg attcgccgat catcgctgaa tatattgagt taatgaatgt cgctccggcg
      601 atgttgccgc gcgatccgct ggagtcgttg cgggtgcgca aaattgaggc gctggcggat
      661 ggcattatgg atgccgggct ggtatcggtg cgtgaacagg cgcgtccagc ggcgcagcag
      721 tctgaagatg aattgttacg ccagcgggag aaaatcaacc gcagtctgga tgtgctggaa
      781 ggatatctgg tcgatggcac actcaaaacc gatacggtca atctggcgac tatcgccatt
      841 gcctgtgctg tcggatatct caatttccgc cgcgttgcgc caggttggtg tgtcgaccgc
      901 ccacacttag tcaaactggt cgaaaacctg tttagccgcg aaagttttgc tcgcaccgaa
      961 ccgccaaagg cttgatgcgc gatatgtcct cctgacccat ctcacgttac aatccgtggt
     1021 tatgttaaac gcccttctcc gtgtgagagg gccttgatta gccaggtttc ctatgacaac
     1081 cgaaacgcgt tccctctata gtcaacttcc ggctattgat cgcttattgc gcgatagctc
     1141 cttcctttct ttgcgtgata cttatggtca cacccgcgtg gtggaattgt tgcgtcagat
     1201 gctcgacgaa gcgcgagaag tgattcgtga cagccagacg cttcctgcgt ggtgtgaaaa
     1261 ctgggcgcaa gaagtcgatg cccggttgac gaaagaggcg cagagcgcgc tgcgtccggt
     1321 gatcaacctg acgggaaccg tgctgcatac caaccttgga cgagctttac aggcggaagc
     1381 cgcggtggaa gccgttgcgc aggctatgcg ttcgccagtg accctcgagt acgatctgga
     1441 cgacgctgga cgcggacatc gcgatcgggc gctggcgcaa ctgctgtgcc gtattacggg
     1501 ggcggaagat gcctgtatcg tcaataacaa tgcggcggcg gtgttattga tgttggcggc
     1561 cactgccagc gggaaagagg tggtagtatc tcgcggcgaa ttggtggaga ttggcggcgc
     1621 gtttcgtatt cccgatgtta tgcgtcaggc aggctgcacc ctacacgaag tagggaccac
     1681 caaccgtacg cacgcgaatg attatcgtca ggcggtgaat gaaaataccg cactgttgat
     1741 gaaagtacat accagtaact acagcattca ggggttcacc aaagcgatag atgaagcgga
     1801 actggtggcg ctcggcaaag agctggatgt tcccgtagtg actgatttag gcagtggctc
     1861 gctggtcgat cttagccagt acggtttgcc gaaagagcca atgccgcagg agttgattgc
     1921 ggcgggcgtc agtctggtga gcttctccgg cgacaagttg ttaggcgggc cgcaggcagg
     1981 gattatcgtt ggtaaaaaag agataatcgc ccgcctgcaa agccacccgc tgaagcgtgc
     2041 attacgcgcg gataaaatga ccctcgcggc gctggaagcc acgttgcgtc tttatttaca
     2101 ccctgaagct ctgagtgaaa aattaccgac cctgcgcctg cttacccgca gcgcagaggt
     2161 cattcaaatc caggcacaac gtttacaggc tccccttgcc gcacattacg gcgcggagtt
     2221 tgcggtacag gttatgccat gtctttcgca gattggcagt ggttcgctgc cggttgatcg
     2281 cctgccgagc gcggcattaa cgtttacacc ccatgatgga cgcggtagcc accttgagtc
     2341 attagccgcc cgctggcgtg aattgccagt gccggtgatt ggtcgtattt atgacggacg
     2401 attgtggctg gatttacgct gccttgaaga tgagcaacgg tttttggaga tgttgttgaa
     2461 atgattattg cgactgccgg acacgttgac cacggcaaaa caaccttatt gcaggcgatt
     2521 actggcgtaa atgctgaccg tctgccggaa gaaaaaaagc gcggcatgac catcgatctc
     2581 ggctatgcct actggccgca gccggatggt cgcgtgcctg gttttatcga cgtacccggt
     2641 catgaaaagt ttctttccaa catgctggcg ggcgttggtg gtattgatca cgcgctgttg
     2701 gtggtggcgt gcgatgacgg cgtgatggcg cagacccgtg agcatctggc gattttgcag
     2761 ctgaccggta acccgatgct gacagtggcg ctgaccaagg ccgatcgcgt ggacgaagcg
     2821 cgtgttgatg aggttgaacg ccaggtaaag gatgtgctgc gggaatacgg ttttgctgag
     2881 gcaaaactgt ttatcaccgc agcaaccgaa ggtcggggaa ttgatgccct gcgcgagcat
     2941 ctgcttcagt taccaggacg tgaacacgcc agccaacata gtttccgcct cgcgatcgac
     3001 cgcccattta ccgtaaaagg tgccgggctg gtcgtcaccg gtacggcgtt aagcggggaa
     3061 gtgaaggtag gcgattcact ctggctgact ggtgtaaata aaccgatgcg tgtacgtgcg
     3121 ctgcatgcac aaaaccagcc aacagaaacc gcccatgccg ggcagcgtat cgcgcttaac
     3181 atcgcgggtg atgcggaaaa agagcagatt aaccgtggcg actggctgct tgccgatgcg
     3241 ccgccagagc cgttcacacg ggtgattgtc gagcttcaaa cccatacacc gctgacccag
     3301 tggcagccgc tgcatattca ccacgccgcc agccacgtca cgggacgcgt ttcactgctg
     3361 gaagataacc ttgctgaact ggtcttcgac accccgttat ggctggcaga taacgaccgc
     3421 ctggtattgc gcgatatctc tgcccgcaac acgctggccg gagcgcgcgt cgtgatgctt
     3481 aacccgccgc gtcgcggtaa acgtaaacca gagtatctgc aatggctggc ttccctcgcc
     3541 agggcacaga atgatagcga agcgttagcc gttcacctgc aacgcggcgc ggttaatctt
     3601 cctgatttcg cctgggcgcg ccagctcaac ggcgaaggga tgcgcgaact gctgcaacag
     3661 cctggctata ttcaggctgg ttatagcttg ttgaatgcgc cggttgccgc tcgctggcaa
     3721 cggaaaattc tcgacacatt agcgacttat catgagcaac atcgcgatga acctgggcct
     3781 gggcgcgaac gtctgcgacg tatggcgttg ccaatggaag atgaagcgct agtactgttg
     3841 ctgattgaaa agatgcgcga aagcggcgac atcctcagtc atcacggttg gctgcatctg
     3901 ccggatcaca aagcgggctt cagcgaagag cagcaggcca tctggcaaaa agcagagccg
     3961 ctgtttggtg acgagccgtg gtgggtgcgt gatctggcaa aagagacggg taccgacgag
     4021 caggcaatgc gcctgacgct acgccaggcg gcgcagcaag gaataattac cgcgatcgtc
     4081 aaagatcgtt attaccgtaa cgatcggatt gtcgaatttg ccaatatgat ccgcgatctc
     4141 gatcaggagt gtggttcaac ctgcgcggcg gatttccgcg atcgcttagg cgtaggccga
     4201 aagctggcaa ttcagattct ggaatatttt aaccgcattg gctttacgcg tcgtcgtgga
     4261 aatgatcatt tattgcgcga cgcattatta tttccggaaa aataaggaaa tgattaatta
     4321 atttttaaaa taaattaata caaatttctt atgattttaa aaaaagcaca ttgtttaatg
     4381 aatacaatgt gctttttatt agattaattt tgataattaa taataatgat catgttttcg
     4441 aatgaaaatc ctcagtaagc ttcccaccct tttttacact ttcaggagtg tgttatggca
     4501 tcttcaactt tctttattcc ttctgtgaat gtcatcggcg ctgattcatt gactgatgca
     4561 atgaatatga tggcagatta tggatttacc cgtaccttaa ttgtcactga cagtatgtta
     4621 acgaaattag gtatggcggg cgatgtgcaa aaagcactgg aagaacgcaa tatttttagc
     4681 gttatttatg atggcaccca acctaacccc accacggaaa acgtcgccgc aggtttgaaa
     4741 ttacttaaag agaataattg cgatagcgtg atctccttag gcggtggttc tccacacgac
     4801 tgcgcaaaag gtattgcgct ggtggcagcc aatggcggcg atattcgcga ttacgaaggc
     4861 gttgaccgct ctgcaaaacc gcagctgccg atgatcgcca tcaacaccac tgcgggtacg
     4921 gcctctgaaa tgacccgttt ctgcatcatc actgacgaag cgcgtcatat caaaatggcg
     4981 attgttgata aacatgtcac tccgctgctt tctgtcaatg actcctctct gatgattggt
     5041 atgccgaagt cactgaccgc cgcaacgggt atggatgcct taacgcacgc tatcgaagca
     5101 tatgtttcta ttgccgccac gccgatcact gacgcttgtg cactgaaagc cgtgaccatg
     5161 attgccgaaa acctgccgtt agccgttgaa gatggcagta atgcgaaagc gcgtgaagca
     5221 atggcttatg cccagttcct tgccggtatg gcgttcaata atgcttctct gggttatgtt
     5281 catgcgatgg cgtaccagct gggcggtttc tacaacctgc cacacggtgt atgtaacgcc
     5341 gttctgctgc cccatgttca ggtattcaac agcaaagtcg ccgctgcacg tctgcgtgac
     5401 tgtgccgctg caatgggcgt gaacgtgaca ggtaaaaacg acgcggaagg tgctgaagcc
     5461 tgcattaacg ccatccgtga actggcgaag aaagtggata tcccggcagg cctacgcgac
     5521 ctgaacgtga aagaagaaga tttcgcggtt ctggcgacta atgccctgaa agatgcctgt
     5581 ggttttacta acccgatcca ggcaactcac gaagaaattg tggcgattta tcgcgcagcg
     5641 atgtaatcat catttccaca acggctggca aattgtcagc cgctttttca actatctctg
     5701 taacccttgc ccgtaaattc gtgatagccg tcgtaaagct gttaccgact ggcgaagatt
     5761 tcgccagtca cgtctaccct tgttatacct cacaccgcaa ggagacgatc atgaccaata
     5821 atcccccttc agcacagatt aagcccggcg agtatggttt ccccctcaag ttaaaagccc
     5881 gctatgacaa ctttattggc ggcgaatggg tagcccctgc cgatggtgag tattaccaga
     5941 acctgacgcc ggtgactggg cagctgctgt gcgaagtggc gtcttcgggc aaacgagaca
     6001 tcgatctggc gctagatgct gcgcacaaag tgaaagataa atgggcgcac acctcggtgc
     6061 aggatcgcgc ggcgattctg tttaagattg ccgatcgaat ggaacaaaac ctcgagctgt
     6121 tagcgacagc tgaaacctgg gataacggca aacccattcg cgaaaccagt gctgccgacg
     6181 tgccgctggc gattgatcat tttcgctatt tcgcctcgtg tattcgggcg caggaaggtg
     6241 ggatcagtga agttgatagc gaaaccgtgg cctatcattt ccatgaaccg ttaggcgtgg
     6301 tggggcagat tatcccgtgg aacttcccgc tgctgatggc gagctggaaa atggctcccg
     6361 cgctggcggc gggcaactgt gtggtgctga aacccgcacg tcttaccccg ctttctgtac
     6421 tgctgctaat ggaaattgtc ggtgatttac tgccgccggg cgtggtgaac gtggtcaatg
     6481 gcgcaggtgg ggaaattggc gaatatctgg cgacctcgaa acgcatcgcc aaagtggcgt
     6541 ttaccggctc aacggaagtg ggccaacaaa ttatgcaata cgcaacgcaa aacattattc
     6601 cggtgacgct ggagttgggc ggtaagtcgc caaatatctt ctttgctgat gtgatggatg
     6661 aagaagatgc ctttttcgat aaagcgctgg aaggctttgc actgtttgcc tttaaccagg
     6721 gcgaagtttg cacctgtccg agtcgtgctt tagtgcagga atctatctac gaacgcttta
     6781 tggaacgcgc catccgccgt gtcgaaagca ttcgtagcgg taacccgctc gacagcgtga
     6841 cgcaaatggg cgcgcaggtt tctcacgggc aactggaaac catcctcaac tacattgata
     6901 tcggtaaaaa agagggcgct gacgtgctca caggcgggcg gcgcaagctg ctggaaggtg
     6961 aactgaaaga cggctactac ctcgaaccga cgattctgtt tggtcagaac aatatgcggg
     7021 tgttccagga ggagattttt ggcccggtgc tggcggtgac caccttcaaa acgatggaag
     7081 aagcgctgga gctggcgaac gatacgcaat atggcctagg cgcgggcgtc tggagccgca
     7141 acggtaatct ggcctataag atggggcgcg gcatacaggc tgggcgcgtg tggaccaact
     7201 gttatcacgc ttacccggca catgcggcgt ttggtggcta caaacaatca ggtatcggtc
     7261 gcgaaaccca caagatgatg ctggagcatt accagcaaac caagtgcctg ctggtgagct
     7321 actcggataa accgttgggg ctgttctgat ataagaagct ggtcgcattg ggtattcatt
     7381 gcctgatgtg acgcttacgc gtcttatcat gcctacggga acctgaccgt aggccggata
     7441 aggcgtacac gccgcatccg gcataaacaa agcgcacgtt gttacaattt acgttttaaa
     7501 cctacgtgcg caataatcca gactacgcca acagaagtgc gtttctgggg cgtgttttgt
     7561 caggagttta atctcgcgtt tcgatggtga gcaggcgaac taggccgtaa atcaccattg
     7621 gtgatccgag gccaatcagc aataaacg
//
LOCUS       DAJVUN010000184         7608 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.184, whole genome shotgun sequence.
ACCESSION   DAJVUN010000184 DAJVUN010000000
VERSION     DAJVUN010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7608
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.184"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(217..439)
                     /locus_tag="OQQ76_003424"
                     /pseudo
     CDS             complement(217..439)
                     /locus_tag="OQQ76_003424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165333.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            841..1554
                     /gene="aphA"
                     /locus_tag="OQQ76_003425"
     CDS             841..1554
                     /gene="aphA"
                     /locus_tag="OQQ76_003425"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HCS1969794.1"
                     /translation="MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQA
                     PIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKNFSPESEDYLKNPVFW
                     EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPAT
                     NMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY
                     KPLPQAGAFGEEVIVNSEY"
     gene            1665..2081
                     /locus_tag="OQQ76_003426"
     CDS             1665..2081
                     /locus_tag="OQQ76_003426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HCS1969795.1"
                     /translation="MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQH
                     TSASLTLNENCDPTVRHDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMQGTSLVL
                     PLHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE"
     gene            2085..2441
                     /locus_tag="OQQ76_003427"
     CDS             2085..2441
                     /locus_tag="OQQ76_003427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HCS1969796.1"
                     /translation="MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVEN
                     RPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQ
                     AVNLLPEEKRKLLVQL"
     gene            complement(2476..5298)
                     /gene="uvrA"
                     /locus_tag="OQQ76_003428"
     CDS             complement(2476..5298)
                     /gene="uvrA"
                     /locus_tag="OQQ76_003428"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HCS1969797.1"
                     /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG
                     EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLA
                     ESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
                     CPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEA
                     PWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSA
                     VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG
                     QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV
                     MYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
                     HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLK
                     DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF
                     DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRC
                     EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE
                     FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL
                     DEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
                     ILVSGTPETVAECEASHTARFLKPML"
     gene            5552..6067
                     /gene="ssb1"
                     /locus_tag="OQQ76_003429"
     CDS             5552..6067
                     /gene="ssb1"
                     /locus_tag="OQQ76_003429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein SSB1"
                     /protein_id="HCS1969798.1"
                     /translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK
                     ATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV
                     VVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNE
                     PPMDFDDDIPF"
     gene            complement(6166..6447)
                     /locus_tag="OQQ76_003430"
     CDS             complement(6166..6447)
                     /locus_tag="OQQ76_003430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjcB family protein"
                     /protein_id="HCS1969799.1"
                     /translation="MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISS
                     GLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPMILT"
     gene            6877..>7608
                     /gene="pdeC"
                     /locus_tag="OQQ76_003431"
     CDS             6877..>7608
                     /gene="pdeC"
                     /locus_tag="OQQ76_003431"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HCS1969800.1"
                     /translation="MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRT
                     FAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDN
                     HFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPL
                     FWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVY
                     STKRPIAAIVATSYQRLITHFYNHLI"
BASE COUNT         1932 a         1866 c         1848 g         1962 t
ORIGIN      
        1 tattgcctgt gactttctga gattcaatta tagtatcgtt aaattctaat gttaaagaga
       61 actctttttt tccgctttgt gtaagtttaa ccttatattg attaccaata tcaaataaaa
      121 aggtcctgta atgagaataa tcacctttaa cctcctcggc aaaacagcaa agcgtgcaaa
      181 tatacataaa gtctttctta cccctgattt tgttaactaa atcaataaat gcgtgaaaaa
      241 ctttacttgc aatagaactt gatacttctt ctccaggtct acaaaaatct tttgcaattt
      301 ttaactgtgt ttctatgtat aaaaagaaat ctttgacata agaaaaatct ttggcataag
      361 agatatcttt attatttagt gcatctagct caacaggtaa agatgtcgtt ttgttgctat
      421 tcatatatga tatattcata tcatcatctc catcgcgagt aataaaatta atcaccattg
      481 taggataggg ttctggtcaa tcaggaatca tctttataaa cttcgattgt ttttgtaatg
      541 ctgtatcatt aagttcatta aatcgtacag cagataaatg ttctatcaaa tttcgctcat
      601 ttgcagagga ttcatcataa taaacgtaaa attaatgtat ccttacatcg agtaataaac
      661 attttttata caaaaaaaga caggaacgta tttactgggt taaatataat catcctgctt
      721 ttcatcacaa aaaccgcaga taatccttcc ttttccctgc agctggcgtt atggtcagat
      781 ggtttttgca acaaatctca caataaaaag tttcaacata ctgactattt agggaaaaat
      841 atgcgcaaga tcacacaggc aatcagtgcc gtttgcttat tgttcgctct aaacagttcc
      901 gctgttgccc tggcctcatc tccttcaccg cttaaccctg gtactaacgt tgccaggctt
      961 gctgaacagg caccaattca ttgggtttcg gtcgcacaaa ttgaaaatag cctcgcaggg
     1021 cgtccgccaa tggcggtggg gtttgatatc gatgacacgg tacttttttc cagcccgggc
     1081 ttctggcgcg gcaaaaaaaa cttctcgcca gaaagcgaag attatctgaa aaatcctgtg
     1141 ttctgggaaa aaatgaacaa tggctgggat gaattcagca ttccaaaaga ggtcgctcgc
     1201 cagctgattg atatgcatgt acgccgcggt gacgcgatct tctttgtgac tggtcgtagt
     1261 ccgacgaaaa cagaaacggt ttcaaaaacg ctggcggata attttcatat tcctgccacc
     1321 aacatgaatc cggtgatctt tgcgggcgat aaaccagggc aaaatacaaa atcgcaatgg
     1381 ctgcaggata aaaatatccg aattttttat ggcgattctg ataatgatat taccgccgca
     1441 cgcgatgtcg gcgctcgtgg tatccgcatt ctgcgcgcct ccaactctac ctacaaaccc
     1501 ttgccacaag cgggtgcgtt tggtgaagag gtgatcgtca attcagaata ctgacagagc
     1561 gggagagcgt gatgctctcc cgaatgctgt ttttttaatc acacctttat cctttcgctg
     1621 tcttgctgca aactgattaa gagagtttta tcaaggagca gcacatgtgg tatcaaaaga
     1681 cgctcacgct tagcgccaaa tctcgtgggt ttcatctggt aacggatgaa attctgaatc
     1741 agctggctga tatgccgcgc gttaacatcg gcttactgca tctgttgctg caacatacct
     1801 ccgcctctct gacacttaat gagaactgcg atcccaccgt acgccacgac atggagcgtt
     1861 ttttcctccg caccgttccc gacaacggaa attatgagca tgactatgag ggagcagacg
     1921 atatgccttc tcatatcaaa tcctcaatgc agggaacatc gcttgtattg ccgttacata
     1981 aagggcgtat tcagaccggc acctggcaag gcatctggct gggggaacat cgcatccacg
     2041 gcggatcgcg tcgcatcatc gcgacactac aaggggagta aaaaatgacc atttcggagt
     2101 tgctacaata ttgcatggca aaaccaggcg cagaacagag cgtgcataac gactggaaag
     2161 cgacgcagat caaagtggaa gatgtgctgt ttgcgatggt gaaagaagta gaaaatcgcc
     2221 cagctgtttc gctgaaaacc agcccggagc tggcggagct gctacgtcag cagcacagcg
     2281 atgtgcgtcc tagccgccat ctgaataaag cgcactggag caccgtgtat ctcgacggtt
     2341 cgctgccgga ttcgcaaatc tattatctgg tggatgcgtc ttatcagcag gcagtgaatt
     2401 tactaccgga agaaaagcgt aaattgctgg tacaactctg aaaggaaaag gccgctcaga
     2461 aagcggcctt aacgattaca gcatcggctt gaggaagcgt gccgtatgcg aagcttcgca
     2521 ctccgcgacg gtttctggcg taccggagac gaggatttcg ccgccgccac tgccgccttc
     2581 tggtcccagg tcgacaatcc agtcagcggt tttgatcacg tcgagattgt gctcaatcac
     2641 cacaatggta ttgccctgat cgcgcagttt atgcagcacg tcgaggagtt gctgaatatc
     2701 ggcgaagtgc agaccggtgg tcggctcgtc gagaatatac agcgtctgcc cggtgccacg
     2761 ttttgacagc tcacgcgcca gcttcacgcg ctgggcttca ccaccagaaa gtgtggttgc
     2821 ggactgcccc aggcgaatgt acgtcagacc aacgtccatc aacgtttgca gcttacgcgc
     2881 cagagctggc accgcatcaa agaactcacg cgcctcttcg atggtcatat ccagcacttc
     2941 gtggatggtt ttgcctttgt acttaatttc cagtgtttca cggttatagc gtttaccttt
     3001 gcactgatcg cacggcacgt agatatccgg caggaagtgc atctccactt tgatcacacc
     3061 gtcgccctga caggcttcgc agcgcccgcc acggacgtta aagctgaaac gtcctggcgt
     3121 ataaccacgc gcacgggatt ccggtacgcc cgcaaacagt tcgcgcacag gtgtaaacac
     3181 gccggtatag gtcgccgggt tagaacgtgg agtacgacca attgggcttt ggtcgatatc
     3241 gatcacttta tcgaaatgct ccagcccctg aatatcgcga tacggtgccg gttcggcgat
     3301 ggtcgcacca ttcaactggc gttgggcaat cgggaacagt gtgtcgttaa tcagcgtcga
     3361 tttaccggaa cctgaaaccc ctgtgatgca ggtaaacaga ccgactggca gcgtgagcgt
     3421 cacgtccttc aggttgttgc cgcgtgcacc tgtcagcttc agcacttttt ctggattcgc
     3481 cggaacgcgt ttcttcggca cttcaatctt gcgtttaccg ctcatgtact gcccggtcaa
     3541 cgattcaggc accgccatga tcgcttccag cggaccttct gcgaccactt caccgccgtg
     3601 aacacccgca ccaggaccga tatcgatcac atggtcagcg gcgcgaattg cgtcttcgtc
     3661 atgctccacc acaatcacgg tattaccgag atcgcgcaga tggataagcg tacccaacag
     3721 gcgctcgtta tcgcgctggt gcaggccgat agacggctcg tccagtacat acataacgcc
     3781 aaccaggccc gcaccaatct ggctcgccag acggatacgc tgggcttcac cgccggaaag
     3841 tgtttctgcc gagcgggaaa gtgtcaggta attcaggccg acgttaacga ggaatttcag
     3901 acgatcgccg atctctttaa ggattttttc tgcaatcttc gcccgctgac cagctagttt
     3961 gagattgttg aagaattcca tcgcatgacc gatgctcatg tcggagatag caggcagcgg
     4021 cgtattctcg acataaacgt ggcgcgcttc ccgacgcaga cgcgtccctt cgcagctggc
     4081 gcatgggcga ttgctgataa acttggctaa ttcttcacgt accgcactgg attctgtctc
     4141 tttataacgg cgctccatat tgtgcagcac gccttcgaac ggatgacgac ggatggaggt
     4201 atcgccacga tcgttcatgt atttgaattc aatgttttct ttgccagaac cgtacaacac
     4261 cactttatgc acgttcgcgc tcaggctgcc ccacggcgct tcgacgtcga acttatagtg
     4321 atctgccagc gatttcagca tctggaagta atagaagttg cggcgatccc agccacggat
     4381 cgcaccgcca gccagtgaca gctcggggtt ttggatcacg cggtcaggat cgaaatattg
     4441 ctgtacgcca aggccgtcac aggttgggca ggcacctgcc gggttgttaa acgaaaacag
     4501 tcgtggctcc agttcacgca tactgtagcc gcaaattggg caggcgaagt tggcggagaa
     4561 cagcagctct tccgctttcg ggtcgtccat atccgccact accgctgtac caccggaaag
     4621 ctccagcgcg gtttcaaacg actccgcaag acgttgggta agatcgtcac gcaccttgaa
     4681 gcgatcaacc accacttcaa tagtgtgttt cttttgcagt tccagtttcg gcggatcgga
     4741 aagatcgcag acttcgccat caatacgagc acggatgtaa ccctggcttg ctaggttctc
     4801 cagcgttttg gtgtgttcgc ctttgcgctc tttaatgatt ggcgcgagta gcatcagacg
     4861 cttgccttcc ggctgcgaca gcacgttatc caccatctgg ctgacggttt gcgccgccag
     4921 cgggacgtcg tggtccggac agcgcggttc gccgacgcgg gcgaacaaca aacgcaaata
     4981 gtcgtggatt tcggtgattg tccccaccgt agaacgcggg ttatgagacg tcgatttctg
     5041 ctcaattgag atggcaggag aaagcccctc aatatgatcg acgtccggct tttccatcag
     5101 tgacagaaac tgccgcgcgt aggcggaaag ggattcaacg taacggcgct gcccttcggc
     5161 atataaggtg tcgaaagcga gcgaggattt gccagaaccc gaaagcccgg tcacgacaat
     5221 gagcttgtcg cgggggataa cgaggttgat gtttttgaga ttatgggtgc gggcgccccg
     5281 aacttcgatc ttatccattc acctttcccg gattaaacgc ttttttgccc ggtggcatgg
     5341 tgctaccggc gatcacaaac ggttaattat gacacaaatt gacctgaatg aatatacagt
     5401 attggaatgc attatccgga gtgttgtgta acaatgtctg gccaggtttg tttcccggaa
     5461 ccgaggtcac aacatagtaa aagcgctatt ggtaatggta caatcgcgcg tttacactta
     5521 ttcagaacga tttttttcag gagacacgaa catggccagc agaggcgtaa acaaggttat
     5581 tctcgttggt aatctgggtc aggacccgga agtacgctac atgccaaatg gtggcgcagt
     5641 tgccaacatt acgctggcta cttccgaatc ctggcgtgat aaagcgaccg gcgagatgaa
     5701 agaacagact gaatggcacc gcgttgtgct gttcggcaaa ctggcagaag tggccagcga
     5761 atatctgcgt aaaggttctc aggtttatat cgaaggtcag ctgcgtaccc gtaaatggac
     5821 cgatcaatcc ggtcaggatc gctacaccac agaagtcgtg gtgaacgttg gcggcaccat
     5881 gcagatgctg ggtggtcgtc agggtggtgg cgctccggca ggtggtaata tcggtggtgg
     5941 tcagcctcag cagccgcagg gtggcaatca gttcagcggc ggcgcgcagt ctcgcccgca
     6001 gcagtccgct ccggcagcgc cgtctaacga gccgccgatg gactttgatg atgacattcc
     6061 gttctgattt gtcattaaaa caataggtta tattgtttta aggtggatga ttaaagcatc
     6121 tgccagccat aaaaaagaag cctccgttat ggaggcttct acgtatcagg tcaaaatcat
     6181 tggccattgt ggcggtgtct gattcatctc ttctatcatc accgactcga tgttgtgcca
     6241 gatagcggtg atgtccgcca ttgtgatgcc aagcaacccc attgcgaacc aacaggcgga
     6301 aacaacgccc agaccgctgc tgatcaccgc aagcccgaca taatcagacc gacgaaaacg
     6361 gatgttgagt gtgctggcca gaaacatcat tacggcacta agaagttgcc agcgaagaag
     6421 aaccacgcca gtggtgaggg tagccatcaa acaattcctc tgaaaagagc cgatgccctg
     6481 gacagcgcgg cgttgttcac gggaggcgtg gtacactctg gctatcgcgg ggcttgcaga
     6541 acacaaaaat gaaacactct gtttgtttca ttaattttgt gaaatatatc acaattgatt
     6601 gtttgttagc catattaggc cgtgactttt attgctgtac agattatgtg gtttttcagt
     6661 ggcattaagg gcatatcttc ccgccgcctc tgcattcctg taggaaatta attttgaata
     6721 tcaatgaatt attttcatcc aggtgacgat tagaaaggta tcaatttcaa atcaggcaaa
     6781 agtgctattt ataccgtaag atttatctaa agacgtcggt acccagggtt ttcaccttac
     6841 aatggccggg tataaacagg caggaaattg atagcaatga gtcatcgtgc acgacaccaa
     6901 ttactggcgt tgccgggcat tatcttttta gttctctttc ccatcattct ttcgctatgg
     6961 attgccttcc tttgggcaaa atcagaagtg aataatcagc tccgaacctt tgctcaactg
     7021 gcactggata aatccgagct ggtcattcgc caggcagatt tagtgagcga tgcagctgaa
     7081 cgctatcagg ggcaagtttg cactccagcc catcaaaagc gaatgttgaa tattattcgt
     7141 ggctatcttt atattaatga attgatctat gcccgtgata accatttttt atgctcatcg
     7201 ctgatagcgc ctgtaaacgg ctatacgatt gcaccggccg attataagcg tgaacctaac
     7261 gtttctatct attattaccg cgatacgcct tttttctctg gctataaaat gacctatatg
     7321 cagcggggaa attatgtggc ggttatcaac cctctcttct ggagtgaagt gatgtctgat
     7381 gatccgacat tgcaatgggg tgtgtatgat acggtgacga aaaccttttt ctcgttaagc
     7441 aaagaggcct cggcagcaac gttttctccg ctgattcatt tgaaggattt aaccgtacaa
     7501 agaaatggct atttatatgc gacagtttat tcgacaaaac gcccaattgc agccattgtt
     7561 gcgacttcat atcaacgtct tataacccat ttttataatc atcttatt
//
LOCUS       DAJVUN010000185         7540 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.185, whole genome shotgun sequence.
ACCESSION   DAJVUN010000185 DAJVUN010000000
VERSION     DAJVUN010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7540
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.185"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..246)
                     /locus_tag="OQQ76_003432"
                     /pseudo
     CDS             complement(1..246)
                     /locus_tag="OQQ76_003432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(586..1126)
                     /locus_tag="OQQ76_003433"
                     /pseudo
     CDS             complement(586..1126)
                     /locus_tag="OQQ76_003433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            1269..1391
                     /locus_tag="OQQ76_003434"
                     /pseudo
     CDS             1269..1391
                     /locus_tag="OQQ76_003434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1653..2219)
                     /gene="ipgB2"
                     /locus_tag="OQQ76_003435"
     CDS             complement(1653..2219)
                     /gene="ipgB2"
                     /locus_tag="OQQ76_003435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion effector IpgB2"
                     /protein_id="HCS1969801.1"
                     /translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
                     TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
                     EKDYHISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
                     FEKNVQYIDLKKLRGNMSDYITNLESPF"
     gene            complement(2501..2815)
                     /locus_tag="OQQ76_003436"
     CDS             complement(2501..2815)
                     /locus_tag="OQQ76_003436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969802.1"
                     /translation="MLQRQRGKVGFAQLPVDFVAIEPDSVQGVGKRANLTNRCFIIRI
                     NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
                     RP"
     gene            complement(2893..3003)
                     /locus_tag="OQQ76_003437"
                     /pseudo
     CDS             complement(2893..3003)
                     /locus_tag="OQQ76_003437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(3327..4004)
                     /gene="ospD1"
                     /locus_tag="OQQ76_003438"
     CDS             complement(3327..4004)
                     /gene="ospD1"
                     /locus_tag="OQQ76_003438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector/anti-activator
                     OspD1"
                     /protein_id="HCS1969803.1"
                     /translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKRNIINVTNTAIS
                     HAINEEKSGGGYSGVSFRKLAKIQSISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
                     SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
                     LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
                     DKIQELF"
     gene            complement(4375..4512)
                     /locus_tag="OQQ76_003439"
                     /pseudo
     CDS             complement(4375..4512)
                     /locus_tag="OQQ76_003439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011787828.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(4594..4892)
                     /locus_tag="OQQ76_003440"
                     /pseudo
     CDS             complement(4594..4892)
                     /locus_tag="OQQ76_003440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343747.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(5481..5640)
                     /locus_tag="OQQ76_003441"
                     /pseudo
     CDS             complement(5481..5640)
                     /locus_tag="OQQ76_003441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(5644..6798)
                     /locus_tag="OQQ76_003442"
                     /pseudo
     CDS             complement(5644..6798)
                     /locus_tag="OQQ76_003442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6818..7165)
                     /gene="tnpB"
                     /locus_tag="OQQ76_003443"
                     /pseudo
     CDS             complement(6818..7165)
                     /gene="tnpB"
                     /locus_tag="OQQ76_003443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858152.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
     gene            complement(7165..>7540)
                     /locus_tag="OQQ76_003444"
     CDS             complement(7165..>7540)
                     /locus_tag="OQQ76_003444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1969804.1"
                     /translation="RRPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWRHQ
                     YRKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLR
                     LKGKLTPALLQILIREIKGSSH"
BASE COUNT         1945 a         1749 c         1638 g         2208 t
ORIGIN      
        1 tcattaccat gacggtattg atgccgattt tcagcgtacg ggcagtatcg cgaactccgg
       61 caccgttgaa gccatttcag tgatttggtt tttaactccc ggtttacggg cctcgtaaca
      121 gtaagtgagc tgaaacaccc ggtgacagtc acggcaacgg aatcgatcat gtccttttgg
      181 gttctgcccg tgacggtaaa cctgaacgga ctggcaacgg gggcaatgaa agttaactgt
      241 gaccatgaaa gaaccttaaa agcgggtatt ataaccccta attcaactaa ttggaggcat
      301 tgtcattttt aatctatgga tacacttaaa aatcctctca ccttacgtta aaaaccttct
      361 catgtttaga gttttttatt atgtttatca taatgatatg acgatctgag tttttaaaat
      421 caagaagaaa agataagttt tttaaatgca cagtgcctgt ggataacttt gcgtaaatcc
      481 ggaggacaga tcactctgaa gcaagacaac agcatctgaa aacaatatgc tcacgtttca
      541 accacagggc gtaagtgatc ctacccacgt aatatggaca caggcctaag cgaggttctg
      601 gttttcaaat tgttccggac tgaggccgcc acaccaactg tgccgtcgcc agcgattgta
      661 atcacattcg atataattaa acactgttgc ccgcattatt tcccggctga taaagtgttc
      721 tccgtggaga cattccactt tcagcgaatg aaagaagctt tccacgcagg cattatcgta
      781 gcagcagccc tttgcgctca tactgccacg cagattatgc cacttcagca gcgcctgata
      841 atctgctgaa cagtactgac ttcctcggtc cgagtgaacg ataacgttcc ggggtctctt
      901 acgccgccac agcgccatct gcagggcatc gcaggccagt tgcgccgtca ggcgtggtga
      961 catggaccag ccaataacgg cacgtgacca cagccagata cagccagcct tcatctgtac
     1021 gtaagtacgt gatgtctccc gcccacttct ggttcggacc actggcgtaa aaatcctgct
     1081 ccagcagatt ttctgacaca ggcaggccat gtgcgcggta actgaccgta ttgctgggta
     1141 agatcaattt gctcactggt atttactacg tgcatcgaat gagtgatcaa gagccgtatg
     1201 acgcgagagt gtcacgtacg gttccgtgag cagccggaga gtgaaactct ctccggctga
     1261 ctcgactcgc aggttccgac agcggtgacg aacatgcagc ggtgttgttc tcgctgatcg
     1321 gcacatgccg tctgaacaat gtggagccag aaaaatggct gcgttacgtt attgaacata
     1381 tccaggactg accggcaaac cgggtacgcg atctgttgcc ttggaaagtt gatctgactt
     1441 ctcagtaaat atcaatatga ttctgacgag ccgcttacct ttgagcagag aaaggggaga
     1501 gggatcccac atccatgagc taggaaaata caaaaactgg ctatacaaca attcaatata
     1561 ttaggactta cttgcgagga gaaatatagc accgctcagg caattcctgg gtatttactt
     1621 ttcttagttt ctttactcgg gatgttctgt catcagaaag gcgattctaa atttgtaata
     1681 tagtcactca tattcccacg taatttcttt agatcaatat attgcacatt tttctcaaaa
     1741 aactgatcgg aaataagatt tgcaacattg cttgttgtat catttttaac gcttctattc
     1801 atcccttcac aaagttcgtc cattttcttt ttgaaataac tgcttcctga tacaagatga
     1861 tttatggaac tttgtgcagc attgatgtct agagaaatgt gataatcttt ctcaacctgt
     1921 ttaaatatct gtttacggag attatcgccg atttttcggc tgtgttctgc acaaaactta
     1981 tcaatacatt ggtttaccac ccgggatacg tagacttttt tttcatcatt tttccaatct
     2041 gtaatatttt caccgatttg ttctgaaaca gagctcaaaa tactagtatt tattttggtt
     2101 gatgatattt ttactatcct tttccccatt gtacagcgga taatctcatc aacctttcct
     2161 gaaaaatatc ttttgtgaga taaactgatt ccaaaattat taaaagatgt tccaagcatt
     2221 ataatcactt tgtcatgtaa aatagtaaca ttgtcattat tttagctgat tcaaacaatt
     2281 ctgtaaatgc tttgagttct ttactccctt ggctcaatga tggaccgtct ggaatcccag
     2341 agactaaact ctctgagaaa gagagtatga aaaaacttgg ggcagtccct aaatgaaggg
     2401 accaacagcg gtaaaataac cggcatcatt cataatgatg ccctgttagt tgtagttatg
     2461 aagatttacg tcattaaaat tgctgttcgt agtgtcagtc ctatggtctg gcatcagctg
     2521 aggatcgtag ccgatacatc actggcttca cgacattcgt gttgaggcta ttcatgaaaa
     2581 ctccacgctg aaaacgccgt tttgtataaa cggtcacggt atgcccggag ccactgttgc
     2641 tgatgaattc gataaaacct tggcgtttct tgaagctatc gttaatgcgg ataatgaaac
     2701 aacgattggt gagattcgct cttttgccga caccctggac gctgtccggt tcaatcgcaa
     2761 caaaatcaac cggcagctga gcaaacccaa ccttgcctct ctgacgctgg agcatgaagt
     2821 gatttagctg ggacgtagcc actgacagct tctataaaag tatgatccta cccacgtaat
     2881 atgaacacag gcttaagtga ggttctggtt ttcaaattgt tcaggactga gacctccaca
     2941 ccaactgtgc cgtcgtcagc gattgtaatc gcacttgata taattaaaca ctgtatattt
     3001 catttgtgga gtctccagtc tgagggggct ttatgcattc cgtattgggc actatgatgc
     3061 cagaaatctg caaggctcca caccttcctg tatttccctt cctctatcac agtgcacttt
     3121 acttaatagg gtgggatgtg ttcattacat ttattgtgtt ttttatgatt gtttttgcgt
     3181 ccagtgtcgt tcgtcatggg aaactggttc tatgggtagt atcgctcagt ctagttaact
     3241 gtttgtttct ttttagaaat taagcagatc acacaattcg gggagagatc cttctaagtg
     3301 caattctttg cagctattta gcacacttaa aacaactctt gtattttgtc agaaataata
     3361 ttaaacatgt cttgttcatt attgttaagt ctgtctgcta tttctgtaag ttttatccca
     3421 ctatgatggc atatatttat atatgccatc atagcctcga tattcccttt ccctgcggcc
     3481 agaaataatc ctggtaaccc ctcattatct cttacatcca atagtttaat cgtttctttt
     3541 ggtgataaat caaaagtttt aataaaatct ccataagctt gaatcgcagc ggaatgacct
     3601 tcttgaagag ctatgaacaa agcagattcc ccagcattat ttcgtgctgc aagaacttct
     3661 agtttttcct ctttgggtat ttcggctgcc aacagcgatt caccgtattt acgcgctgca
     3721 tcggcatttc catgccaaat caatgaaaac aaattatggc ggttatactc cttattattc
     3781 tttgtcggaa tggatatgct ctgtattttg gccaattttc tgaaagaaac accactatat
     3841 cccccccctg atttttcttc attgatggcg tgggatatag cggtatttgt cacgttaatg
     3901 atattacgtt tcattccttt attttcatta gcagtattgc tgcctattat taggtgcata
     3961 tttttgttgt ttgctggatg taatccatag ttatttattg acatttttgt tcatcctttt
     4021 tgctaaaaaa aacaataacc tatttttgta atgtaataga tattagtcta ttgctaatct
     4081 aaaaaaacca ttgccacatt gaatggctat attcaccaat aaattctttc gatttcgtat
     4141 attgacatat cgtagatata tcttatccct aagattcaat aatcgagtcc gtttaccatt
     4201 ctgtgcaagc gccttcactc agaagtgacc gtcaaggcga tcaccaaact tgataataaa
     4261 gcagctcatt gccatacgcc agtccttaag gggcgttgtc catttctgtg atgctgccta
     4321 gatttaactg ccagctccgg cttatctaca tctaaatatg tgagcctaat accgctacac
     4381 tttggccaga ctatgttttt ctccgggaag tgggctaacc gtctccataa agtgacgaac
     4441 ttttttcaac agtggccata ttgaacggca ctgatgatta cgggttattg tctcatgaag
     4501 agccggccac atcactgaca gcagtgactt caggccttca gcaccagaca gcctgaacca
     4561 gttaatccat cgcccgacag atttagtaat ctagggctgg tttttcttca gctgttgcgg
     4621 ttcgaaagtg ccattacgat cacgcagagt acggatttcc agaggttcat ctccagtagt
     4681 gataatcttc gttaagcaac cattgcggga attgctgcca gatctaagct gatttttctc
     4741 gcacccaaga tgatgagtca tattagcatt gagtacggtt tcattttcag catccaatca
     4801 aactgactga gatcttcagg atttttgaga cttttggcta gttcattagc taaagcccgc
     4861 aacttattag atgtcaactg tttttcattc ataaattcac cttcatttga tatcaaatta
     4921 aatagttcaa catcagagaa ttatacaaac ttatgtacag gctcctatga tcttcgaatc
     4981 ctgaagatta tagtgaaaat aagttttcac gttgaaatcc cacatagtta gtatatgata
     5041 aataatcatg gatgacctga ttaacctctt ggggtagtgc ttttatagaa gaataaatat
     5101 tctactaatt taatacatca cctaaaatag tattgttttt tatggttggt tgaaggtcgt
     5161 ggtgatgatg ttagtccttt tgagaatatt ccagtgccag atcttactta taataaaggg
     5221 gcttggcagt ttggataaac tattgttctt attccactaa tacaaacttt ttgtaaagta
     5281 tattaaatat acttcatttc atactgaaat ccccggaagt attcaatcaa acaattacac
     5341 cataaaagga agagggggcc ctaattaagt tgtcaagcat gtttatgata cctgcagggt
     5401 ataaattttc tggctgcaag cagacacata taaaacgtct ttattgatcc tacccacata
     5461 atatggacac agtcgtaagt gaggctctgg ttttcaaatt gttccggact gagaccacca
     5521 caccaacggt gccgtcgcca gcgattgtaa tcgcactcga tataactaaa cactgttgcc
     5581 cgcactattt cccgatggat aatagtgttc tccgtggaga cattccattt tcagcgaatg
     5641 aattttcatc tgttgctgta tccagtcata caatgactgc atcagtggcg cggctctggc
     5701 ttttcttgcc gccagacgct gttctgctga acatccccgg acttctgcct cgatggcata
     5761 cagttcaccg atacgcagca gggcttccgt tattctgccg gattcgtaca acgcccggta
     5821 accaccgtaa gcatcggcct gaagcactcc gctgtaaccg gccagatgat tctgtggatg
     5881 gatacctttc cggtccggtg agtacgcgaa ccagaccgcc ggaggcattt ccgaaccggc
     5941 gttacggtca tcacgaacgt agacccacag ccgggcagtc cttgttttac cgctgcccgg
     6001 ctcctggacc ggaacgggga tatcatcggc atggacttta ccgggcatca gcacatactg
     6061 gcgcaggatg tcatacagcg gttccagcag ttcagcaaca gcacctgtcc agcgccccag
     6121 tgtggcacgg ctcagctcca cgccctgacg acggtatatt tctgactggc ggtataacgg
     6181 cagatagtct gcatattttc cagcgacaac atgggccaga agccccgctc cggcataact
     6241 gcgtgcaatg ggttttgaag gcaccggtgc ttgcacgata tggtcgctcc ggcgacaggc
     6301 cagtttaggg cgttgttttt cgataacctt aaaggcgctg ctgataagct ccagctgctc
     6361 tgacacatca catcccagtg gactgagttc accaccacag gccggacagc attcctcttc
     6421 cggccggatg acccgggggg cacggggaag tgaggctggt aacggtttac gggctgaaga
     6481 ctggcgcagg gaagatggca gtaccgggtc atattgctca cccagtgttt ccgccatttc
     6541 ctcctgaagt gcgctgattc gctcctgtgc ttcctgtatc cgccgttcgg tttttgcgcg
     6601 aagtttttct gagcttttac cgaactgcat gcgctgcagt ttcgcaacca gcgccttcag
     6661 ccggttgatt tcggaagcat aagccgccac ccgctgtgag agcaggcggt tgtatttcgc
     6721 catctggcgg atggtgtcct gttgcgtctg caacagtgcc cgcaggcggg cattctcatg
     6781 agcaagtgag gtgtccatat cctcacttta caacgggtta tatgcggatg ccagcgcgtt
     6841 ccgttcgttt cgggtgtttc cagtcgatgc cctcaagaag catggataac tgggccggag
     6901 taaggtgcac cttgccgtca cgggtgaccg gtcagacgaa gcggccccgc tccaggcgtc
     6961 tggtaaagag gcacagtccg tcactgtcag cccacaacac ttttatctgg tcaccccggc
     7021 gtccgcggaa gatgaacaga tgcccggaga acgggtcatc cttcaggacg ttctgaactt
     7081 ttgaggccag accgttaaag ccatttcgca tatcggtgat acctgcaacc agccagatac
     7141 gcgaacctgc agggaaagat atcatcagtg gctgctccct tttatttcgc ggataagtat
     7201 ctgtaataac gccggcgtca gtttaccttt aagcctgaga gttccggccg gcagaaccag
     7261 ctcacagcac agactgtcgg acggtgtatt tatctgctct ggttcctgtg ccggagccgg
     7321 gattttatta tccggctccg gcgttaacgt cacgggaagc agtgcaggca tattttttcc
     7381 ggaaggcagc aggccacctt tccggtattg atggcgccag ttgaagagca ggttatcgtt
     7441 gattccgttt tcacgggcga tctgcgccac acaggctccg ggctgcagtg actgctccac
     7501 taaggcgatt ttaaattcat aaggaaaatt aggccgccgg
//
LOCUS       DAJVUN010000186         7506 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.186, whole genome shotgun sequence.
ACCESSION   DAJVUN010000186 DAJVUN010000000
VERSION     DAJVUN010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7506
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.186"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..102)
                     /locus_tag="OQQ76_003445"
     CDS             complement(<1..102)
                     /locus_tag="OQQ76_003445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HCS1969805.1"
                     /translation="MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVEF"
     gene            complement(115..1896)
                     /gene="gcl"
                     /locus_tag="OQQ76_003446"
     CDS             complement(115..1896)
                     /gene="gcl"
                     /locus_tag="OQQ76_003446"
                     /EC_number="4.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate carboligase"
                     /protein_id="HCS1969806.1"
                     /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR
                     HILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG
                     QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV
                     DLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINAD
                     AAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFG
                     IGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ
                     EMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT
                     IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ
                     FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG
                     VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE
                     LDNVMEFEDIADNAVDAPTETCFMHYE"
     gene            complement(1986..2801)
                     /gene="allR"
                     /locus_tag="OQQ76_003447"
     CDS             complement(1986..2801)
                     /gene="allR"
                     /locus_tag="OQQ76_003447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor AllR"
                     /protein_id="HCS1969807.1"
                     /translation="MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVS
                     DISLNLDLPLSTTFRLLKVLQAADFVYQESQLGWWHIGLGVFNVGAAYIHNRDVLSVA
                     GPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKAL
                     LYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCI
                     ASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP"
     gene            complement(2879..3361)
                     /gene="allA"
                     /locus_tag="OQQ76_003448"
     CDS             complement(2879..3361)
                     /gene="allA"
                     /locus_tag="OQQ76_003448"
                     /EC_number="4.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HCS1969808.1"
                     /translation="MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALV
                     EILEQDRTLISINRAQPANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDL
                     STLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA
                     "
     gene            3591..4526
                     /gene="allS"
                     /locus_tag="OQQ76_003449"
     CDS             3591..4526
                     /gene="allS"
                     /locus_tag="OQQ76_003449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HCS1969809.1"
                     /translation="MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENT
                     GVALFFRTTRSVTLTAAGEHLLSQARDWLSWLSWLESMPSELQQVNDGVERQVNIVIN
                     NLLYNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALAN
                     TFSLDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLP
                     GQKEIIVPDMETKIAAHLAGVGIGFLPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAW
                     RKFGSGKAVEDIVTLFTQRRPEISGFLEIFGNPRS"
     gene            4595..5689
                     /gene="mnmH"
                     /locus_tag="OQQ76_003450"
     CDS             4595..5689
                     /gene="mnmH"
                     /locus_tag="OQQ76_003450"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HCS1969810.1"
                     /translation="MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMN
                     NDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRIDAWRAACLQNPQGILCCARGGQ
                     RSHIVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQ
                     QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDES
                     RMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQ
                     EYCEYLHHGLSAIKRRLGLQRYNELAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYD
                     PMYRYQLEKKAEKVVFRGEWAEVAEWVKAR"
     gene            5805..6170
                     /locus_tag="OQQ76_003451"
                     /pseudo
     CDS             5805..6170
                     /locus_tag="OQQ76_003451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014543172.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(6936..7182)
                     /locus_tag="OQQ76_003452"
                     /pseudo
     CDS             complement(6936..7182)
                     /locus_tag="OQQ76_003452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308588.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7163..>7506)
                     /locus_tag="OQQ76_003453"
     CDS             complement(7163..>7506)
                     /locus_tag="OQQ76_003453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308587.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HCS1969811.1"
                     /translation="MKRLNLGGTDQFFHCMAFCRVSKLNDAGVSRSAKGLGYEKEIRD
                     YGLNLFGMYGRKVKLSHSEMIEDNKKDLAVNDHGLTCPSTTDCSDRCSDYINPEHKKT
                     IKALQDAGYLK"
BASE COUNT         1953 a         1912 c         1758 g         1883 t
ORIGIN      
        1 aaattcaacg ccgcgaaaac cacactgcgc agctttctca aaacgggcga gaaaatcata
       61 ttcaccaaat aacatcgata aattagcaga gaaacgtaac ataatttacc tcccttattc
      121 atagtgcatg aagcaggttt cagtcggtgc gtccactgcg ttatcggcga tatcttcaaa
      181 ttccatgacg ttatccagtt cgctgcccat cgaaatattg gtcacacgct cgagaataac
      241 ttccacgact accggtaccc gatattgcgc cattaaggct ttcgcctgtt caaaggctgg
      301 cgcaatatct tccggtttga agacgcgaat cgctttacaa cctaaacctt ccgctacttt
      361 tacgtggtcg acgccgtaac cgttcacttc gctggagttg atattctcga aagcgagttg
      421 cacgcagtag tccatgtcaa aggcgcgttg tgactgacga atcaggccga gataggcgtt
      481 attcaccagc acatggatgt acggaatgtt gaactgcgcg ccaacggcta actcttcaat
      541 caggaactgg aagtcaaagt cgccagaaat cgccaccaca ttgcgtttcg gatcagcggc
      601 acaaacccct agcgcagccg gaatcgtcca gcctaacgga ccagcctgac cacagttgat
      661 ccagtggcgg tctttaaaga catgcagcat ttgtgccgca gcgatttgtg acagaccgat
      721 ggtggtgaca taacaaacat cgcgaccaaa ggctttgttc atctcttcat acacgcgctg
      781 cggtttcacc ggcacgttgt cgaagtgggt tttgcgcagc aaagtgcgtt tgcgctgctg
      841 gcagtcggcg acccattctt tacgacacgg cagacgaccc gctttttgca tctcctgcgc
      901 cacttcaacc agcagtgtca gcgccgcttt agcatcagag acaatgccga gatccggaca
      961 cagcacgcga ccaatttgcg tcggctcaat atcgatatga acgattttgc gcccttcggt
     1021 gtatttctct accgaaccgg tatgacggtt agcaaaacgg ttaccgatac caaacaccat
     1081 gtcggacgcc agcaacgttg cgttaccgta acgatgcgcg gtttgcaggc cgaccatccc
     1141 ggccatcagt tcatgatcgt ccgggataca gccccagccc atcagcgttg ggatcaccgg
     1201 aacgctggtc agttcagcaa actgttgtaa cagtgcagct gcgtcagcat tgattacccc
     1261 gcccccggca acaatcaccg gacgttcggc ctggattaac atttctacag ctttttcgat
     1321 ctgcatacgg ctggcagcag gtttgtagac cggcagcggt tcgtacatgt caggatcaaa
     1381 ctcgatttcc gcaacctgaa cgtcgaacgg taaatccacc agtaccggac ccggacgacc
     1441 agaacgcatc aggtgaaatg cctgttgcag cacgcgaggc accagcgccg cttcacgaac
     1501 tgtaaccgcc attttgctga ccggtttagc aattgcttca atatctacgg cctgaaaatc
     1561 ttctttatgc agacgggcgc gcggtgcctg gccggtaatg cacagaatag gaatggaatc
     1621 agcagaagcg gaatagagcg cggtgatcat gtccgtgccc gcaggaccgg aagtccccag
     1681 acatacgccg atattccctg ccgttgcgcg ggtataacct tccgccatgt gcgaagcacc
     1741 ttccacatga cgcgccagaa tgtgacgaat accgccgtgc ttacgcatcg ctgagtagaa
     1801 cggattgatt gcagctcccg gaacaccgaa ggcggtggtg ataccttctt tctccagcac
     1861 atacattgcc gcgtcaacgg ctctcatttt tgccatttta ttcctacctc tatttattgg
     1921 aaaatttttc caactttcaa attttgtcaa aaaaacccgc tccgcagagc gggatgcgac
     1981 agacattatg gatgtgcttt cagtcccaac gccgtgctga tatcgcgggc ggtgtctctg
     2041 accagctcac cctgactgac aaaacgatct tctgtcagtc ttgatgaagg cccggagatg
     2101 gagatagcgg caacaacgct accgacatca tcgtaaattg ctgaagctat gcaattcaga
     2161 cctacaacat gctcttcttt atctacggta tagcccagtt cacgcgcttg ttccaggtcc
     2221 ttcagcaagg tgggcatatc cacaagcgta gttggcgtaa actgctgcaa accggtttgc
     2281 agaatgatgc tcatcaactc ctcttccgcc agcggataaa gcagcgcttt gcccgcaccg
     2341 gaagcatgca gcggcagacg actgcccagt ggcgcacaca tcctgaccat tgatttacac
     2401 tctaactgac caattaatac tgcttcattg ccgttacgga tcgcgacatt gaccgtttcg
     2461 ccggaaagta acatcaggcg gcgcataaac ggcccggcga cggagaggac atcgcggtta
     2521 tggatgtacg ccgcaccgac gttaaagaca cctaatccta tatgccacca gcctaattga
     2581 ctttcctgat agacaaaatc cgctgcttgt aaaaccttca gcaagcgaaa ggtcgtggag
     2641 agcggcaaat ccagattgag agaaatatcg ctaaccgacg aacttccccc acttttttcc
     2701 agatattgca gaatcgcaat tccccgctct aacgcctgtg cgcccttctg tgccacaggc
     2761 tccgcctgtc ctggcctgcc gcgccgtcta acttccgtca tacctacgtt aactccgacc
     2821 tacaagtgag cataaacaat gaacaattag tttatcttat gcaagtcggt tgcaggcgtc
     2881 acgcaaaaca gagttcctgt tcaggaatac tttcaacatc acagttgtca ctgccgccgc
     2941 gatcgatggt cagaaaatcg gtgacgcgct gccaggcgaa aagtgggtga tgccagacgt
     3001 tacgatggta attcactccc tgttcgccgt tggtgataaa cgcccgcagc gttgacaggt
     3061 ctggtttgtc gtcgcctaac gccacgacca ccacaaacac ttcacctttc atcgggataa
     3121 aggcctgagt gcccagcgga tgacgttcga gttcgtgaat ggtcagcggc agattcgccg
     3181 gttgcgcgcg gttaatgcta ataagcgtac ggtcttgctc aagaatctca accagcgcca
     3241 aatcgtggta acgctccacc aggccattgt taatatggaa aaaatcccgt tgctgagttt
     3301 cgattacgtc gccataagca ctaaaggctt cctgacttaa cggtaatacc tgaagtttca
     3361 tctttttgtc cttgtaacat aattccgttc aaccaccgcc gaccggtcag cttggtttca
     3421 ataacaggca atctaaaacc ttaagagaac aacatcaata caaaagttgg aatatttttc
     3481 caaaaccaga tttagtccac aaattgaaca gggttatcat gtaaaaatac tgataaatca
     3541 gaggataaga aaatcacgca acttgcggat ttaaaagggg atacctgaag atgttcgatc
     3601 cagaaacctt gcggactttc attgcggttg ctgaaacagg aagtttttca aaagcggcag
     3661 aacgattatg taaaaccacg gcgacgatca gttatcgcat taaacttctg gaagagaata
     3721 ccggagtagc gctgtttttc cgtacgactc gtagcgtaac gttgacagcg gctggcgagc
     3781 atctactttc ccaggccaga gactggctga gctggctgag ctggctggaa agtatgccca
     3841 gcgagctgca acaggtgaat gatggcgtgg aacgccaggt gaatattgtc atcaacaacc
     3901 tgctctataa cccccaggcc gtcgcccagt tgctagcgtg gctgaatgaa cgttacccct
     3961 ttacccagtt tcacatctcc cgacaaatct atatgggcgt ctgggactcg ctattgtacg
     4021 aaggtttttc gctggctatc ggcgtcacgg gaactgaggc gctggcaaat acctttagtc
     4081 ttgatccctt aggatcggtg caatggcgat ttgtcatggc ggcggatcat ccgctggcga
     4141 acgttgaaga gccgctaaca gaagcgcagt tgcgtcgctt tccggcggtc aatattgaag
     4201 acagcgcccg caccttaacc aaacgcgtcg cctggcgatt gccagggcaa aaagagatta
     4261 ttgttcctga tatggaaacg aaaatcgccg cccatctggc gggcgttggc attggttttt
     4321 tgccaaaatc gctttgccag tcaatgatcg ataatcaaca actggtcagc cgggtaatcc
     4381 caacgatgcg ccctccttcg ccattgagtc tggcatggcg caaatttggc agcggcaaag
     4441 cggtagaaga tattgtgacc ttgtttaccc agcgcaggcc ggaaatcagc ggatttttag
     4501 aaattttcgg caacccacgc agttaaaaat caagtttcct tgcgcgttgg cgcgtaaaat
     4561 agcgcgcaag ctgatttgag gttcactttt aactatgcaa gagagacaca cggaacagga
     4621 ctatcgtgcc ctgctgattg ctgatacgcc cattattgat gttcgcgccc ctatcgagtt
     4681 tgagcaaggc gcaatgcccg ccgctatcaa tctgccgtta atgaataacg atgaacgcgc
     4741 cgccgttggc acctgctata aacagcaagg gtcagacgcg gcgctggcgc tggggcataa
     4801 actggtggcg ggtgaaattc gtcagcagcg catagacgcc tggcgggcag cgtgcctgca
     4861 aaatccgcaa ggtattctct gctgtgcccg tggcggtcaa cgctcacata ttgtgcaaag
     4921 ctggttgcat gcagcgggga ttgattatcc gctggtggaa ggcggttata aggcactgcg
     4981 ccagaccgcg attcaggcga ctattgaact ggcacaaaaa ccgatagtgc tgattggcgg
     5041 ttgtaccggc agcggtaaaa cgctgttagt gcagcaacag ccgaacggtg tcgatctgga
     5101 agggctggcg cgtcatcgcg gttcggcgtt tggtcgcacg ttacaaccac aacttagcca
     5161 ggcgagtttt gaaaatctgc tggctgccga aatgctaaaa accgacgccc gtcaggattt
     5221 gcgcctgtgg gtgctggaag atgaaagccg gatgatcggt tcgaatcacc tgccggaatg
     5281 tctgcgcgag cgaatgactc aggcggcgat tgcggtggta gaagatccgt ttgagatccg
     5341 tcttgaacgc ctgaacgaag agtatttctt gcgtatgcat catgatttta cccacgcgta
     5401 cggcgacgaa cagggctggc aggaatattg cgaatacctg catcacggac tttcggctat
     5461 taagcgtcgg ctggggttac agcgctataa cgaactcgct gcccagctgg atacggcgct
     5521 gacaacgcaa ctcaccaccg gcagcaccga cggtcatctg gcctggctgg tgccgttact
     5581 taaagaatat tacgacccaa tgtatcgcta tcagcttgag aaaaaagcgg aaaaagttgt
     5641 ctttcgcggt gagtgggcgg aagtggcgga atgggttaag gcgcggtaat gagggacgta
     5701 tttgtattag tcgcgacttg atctgacaca tggccttgaa aggttgagag ttaccggttt
     5761 tgatatgagt gtcgaatcct tatccaaaac aagaggtaac tctcatgctt catactgcca
     5821 atcccgtcat caaacacaaa gccggtttgc tcaatctggc tgaagaactc agcaacgtat
     5881 caaaagcctg taaaatcatg ggcgtttcgc gtgatacgtt ttatcgttac cgcgaactgg
     5941 tcgctgaagg cggtgtggat gcgcagatta atcgtagtcg ccgcgctcct aaccttaaga
     6001 accgtaccga tgaggcaact gaacaggctg ttgttgatta cgccgtcgct ttcccgacac
     6061 atggtcagca ccgggccagc aacgagctgc gtaaacaggg gggttttatc tccgacagtg
     6121 gtgtccgttc tgtctggtta ctccataacc ttgagaatct caaaagacga tactgaacaa
     6181 attttatcag gtgacgttcc gtaaaaagtt gtatggagtt ctcgatgcag tcggcgcgac
     6241 tatcagtacc cccgctgaac cctggactat cgggccgccg tactggggca tgtcaccctg
     6301 gcgtgccgct ggttttccgc taatggttta tttcctcttt ctttcccggc aagaatttat
     6361 tttaatccgg aaggattatt tattttcaga tagggactca cattaaacac gtaacatttt
     6421 aattaatgca tggctgaata tgtattacac aatgtcagat atcgtaaaag accagtgcaa
     6481 ttctatgtaa actctctgac tgttcatttt atttgttgtt tcagggtcgg aactcaccct
     6541 caataaacaa ctgaatacga gtagatattc atcgtctgag ctatatggct ttacacaata
     6601 gccgacatgt cttttctcag tcaggaattt tacttttcct cactacgaag ttgacgactt
     6661 cgatatggga tagactctta attcaagcaa ttactctgca caagcatcag gcaatccagc
     6721 tccaatattt gttataaaat aatgcgtaac attaatttca ccaacaaaaa aaggtttaca
     6781 ccatcccctt gccctggtat cttaccatat ttacaccaca ctttttttgt atctggatca
     6841 ttctttgata cgattttcgc cacttgttcc ctggccctca ctgtcaatgt tttcttaaac
     6901 ctacccccat catcatttgt tagggaaaaa taagaaaaaa aataatcatc ttctacattt
     6961 gtgtatattg atatatccac cgctacgtgc gaaaaaaaaa tctgggagcc atgtaaaaac
     7021 tccatcattt tctggtattg ccatatagtt tatgtaatgt ttacttacaa gagattcatc
     7081 tttgtataaa taaagataag taattacgca taaaacaaca atgattataa tagcaaaaat
     7141 aaatattatc atctttgata gattacttga gatagccagc atcttgtaaa gcctttatcg
     7201 tttttttatg ctctggatta atataatcac tacatctatc tgagcaatct gttgttgatg
     7261 gacatgtcaa cccatggtca tttacagcca agtctttttt attatcttca atcatttcag
     7321 aatgggatag ctttactttt ctgccgtaca taccgaacag atttaacccg taatctctaa
     7381 tctctttttc ataacccagc cctttcgccg atcggctaac accagcgtca tttaatttag
     7441 acactcgaca aaatgccata caatggaaaa attgatcagt cccacctaaa tttaatctct
     7501 tcataa
//
LOCUS       DAJVUN010000187         7456 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.187, whole genome shotgun sequence.
ACCESSION   DAJVUN010000187 DAJVUN010000000
VERSION     DAJVUN010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7456
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.187"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..586)
                     /locus_tag="OQQ76_003454"
     CDS             complement(<1..586)
                     /locus_tag="OQQ76_003454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HCS1969812.1"
                     /translation="MDMGSQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS
                     WGIDDRDDLLRTIHRMIENGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV
                     ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQ
                     YFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDS"
     gene            749..1726
                     /locus_tag="OQQ76_003455"
     CDS             749..1726
                     /locus_tag="OQQ76_003455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HCS1969813.1"
                     /translation="MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSP
                     DDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEHAIFWLKKTALQGHTFASN
                     ALGWILDRGEDPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYK
                     QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQSNRHAQFQIAWDYNAGE
                     GVGQDYKQAMYWYLKAAAQESVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDA
                     TAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL"
     gene            complement(1796..2278)
                     /locus_tag="OQQ76_003456"
     CDS             complement(1796..2278)
                     /locus_tag="OQQ76_003456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon-containing protein"
                     /protein_id="HCS1969814.1"
                     /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELT
                     RTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR
                     EVFPDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP
                     "
     gene            2513..5095
                     /gene="leuS"
                     /locus_tag="OQQ76_003457"
     CDS             2513..5095
                     /gene="leuS"
                     /locus_tag="OQQ76_003457"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008456064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HCS1969815.1"
                     /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP
                     SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY
                     DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP
                     NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKS
                     MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP
                     ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA
                     VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH
                     EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL
                     PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPEY
                     KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ
                     GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
                     NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA
                     KGDVAALNVDALTEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP
                     TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED
                     STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN
                     LVVG"
     gene            5110..5691
                     /gene="lptE"
                     /locus_tag="OQQ76_003458"
     CDS             5110..5691
                     /gene="lptE"
                     /locus_tag="OQQ76_003458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HCS1969816.1"
                     /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN
                     GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIM
                     TVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
                     SIRAADIRSDEEQTSTTTDTPATPARVSTTLGN"
     gene            5691..6722
                     /gene="holA"
                     /locus_tag="OQQ76_003459"
     CDS             5691..6722
                     /gene="holA"
                     /locus_tag="OQQ76_003459"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HCS1969817.1"
                     /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA
                     QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG
                     LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL
                     ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV
                     DALLMGKSKRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH
                     RVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQLVWAELEGLSLLLCHK
                     PLADVFIDG"
     gene            6724..7365
                     /gene="nadD"
                     /locus_tag="OQQ76_003460"
     CDS             6724..7365
                     /gene="nadD"
                     /locus_tag="OQQ76_003460"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HCS1969818.1"
                     /translation="MKSLQALFGGTFDPVHYGHLNPVETLANLIGLTRVTIIPNNVPP
                     HRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL
                     AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNQED
                     LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR"
     gene            7389..>7456
                     /locus_tag="OQQ76_003461"
     CDS             7389..>7456
                     /locus_tag="OQQ76_003461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HCS1969819.1"
                     /translation="MRLWLIRHGETQANIDGLYSGHA"
BASE COUNT         1951 a         1836 c         1907 g         1762 t
ORIGIN      
        1 cggaatcgtc gtattcttta cgcgctaaga attcgcgtaa taaaggcaga tgatcatctt
       61 cgggagactg ccaatattgc cgaccaaagg tataaccggc aaagtattgc cgccagttac
      121 tataataacg tagagcccgt agatgaatac gcgactggat ccatagactt tcttcttcac
      181 tcaaccagtt attaagtacg cccattcgac ttaaaaaacc catccggaca taatcccatg
      241 ctttaattcc tccctcacca cagcattcgg ctgtgctggc gacaaattgc gcataagcct
      301 gaccttgctc atttaattca gcaagatagt cacgccattc acatggagaa taacgaaacc
      361 agcggtgata aaaccctgcc aaccgagcgg catgaccgtt ctcgatcatt cggtgaattg
      421 tgcgtagcag gtcatcacgg tcatcaattc cccatgagga agaaaggtca aaaaagcatg
      481 tacctaaata cattttgggg gatgaatgcg aaggtaaaca gcattcattg cgtatttcca
      541 tcggagtgga aagtgcaaac aatatttttt gcgaccccat gtccatataa tttatcctta
      601 aacattcatt taatgaatgt aaactacatt tcgagactca gttatttata cttttctgac
      661 gcgacataat acgcataaaa taaggcttac gcaaaaatgg aacacataaa atataatatg
      721 ttttatctac aaccataagg aaatgataat gatttttacg tcaagttgct gcgataattt
      781 atcaatagat gagattatcg aacgtgctga aaaaggcgat tgcgaggctc aatatattgt
      841 tgggttttat tataatcgcg atagcgcaat tgactctccg gacgacgaaa aggcctttta
      901 ctggctgaag ctggccgccg agcaaggtca ttgtgaagca caatattcct taggacaaaa
      961 gtatactgag gataaaagcc gtcataaaga taatgagcat gccatctttt ggctgaaaaa
     1021 aactgcccta caaggccata ctttcgcttc caacgccctt ggctggatac tggatcgtgg
     1081 agaagacccc aattataaag aagcggttgt ctggtatcag atagccgcgg agagcggaat
     1141 gtcttatgcg caaaataatc ttgggtggat gtacagaaat ggcaacggag tcgcaaaaga
     1201 ctatgcgctg gcatttttct ggtacaaaca agctgcatta caaggccata gtgacgcgca
     1261 aaacaatctg gccgatcttt atgaagacgg aaaaggcgtt gctcaaaaca agacactcgc
     1321 cgcattctgg tatttgaaaa gcgcacagca gagtaatcgg cacgcccagt ttcaaattgc
     1381 atgggattat aacgctggcg aaggggtggg ccaggactat aagcaagcga tgtactggta
     1441 tctgaaggct gccgctcagg aaagcgtcgg cgcttacgtc aacatcggtt atatgtataa
     1501 acacggacaa ggcgttgaga aagattatca ggctgccttt gaatggttta cgaaagccgc
     1561 tgaatgcaat gacgccactg cctggtataa cctggccatt atgtatcact acggagaagg
     1621 aagacctgtc gatctccgac aggctctcga cctgtatcgt aaagttcagt catccggaac
     1681 cagagatgtc agtcaggaaa ttcgtgagac tgaagattta ctgtagagat aaaaacaagg
     1741 gccggggaat ttcattcggc ccatattctc tttattgctg tgcgaaatca gactattacg
     1801 gctcaaacgg gcgtctctgg aactggtcat gaccacattt cgggcatagc gtcagcactt
     1861 ccggtgtgta gatcgggaga tggaagtgac atttctcgca gaccagattt cccagcccga
     1921 ccacttctcc gctgtgataa accccatgat gattgaggtc cgggaaaact tcgcgccatt
     1981 caagctgcgt tttatcggtg atatctgcca gctcctgcca taagctttct ttaatcaccc
     2041 gcataaagac gctgtcagat tcttctttca ggctctcttc atagctcatg gcgaactctt
     2101 ccaggtcacg tcttacagct cgcgtcagct catcgacctc ggttcgcgtt aactcccctg
     2161 tttttattac gcgctcgcgc gcctgttcca ccagtgcgtc gatatcacgt tcgccattgc
     2221 gcaggcgttc gctcagtgac gcgaccagtt cacggtaata ttgagcaacc ttgttcatcg
     2281 tttcatctcc cgggtcgtta actgactata ataatagacg ttctttgttc cttgctttgc
     2341 taatacgccc acaaactctg taaattaatg tatgaataat ccgggcatca tttcaacgtc
     2401 gagtgcgcga aaggctgttt tgacgcggac gtttgggcta tgctatgcgg atctgaaaaa
     2461 ccacctcaac gctacatttg tagccgtatt gaaaacagga ccactggctg ccatgcaaga
     2521 gcaataccgc ccggaagaga tagaatccaa agtacagctt cattgggatg agaagcgcac
     2581 atttgaagta accgaagacg agagcaaaga gaagtattac tgcctgtcta tgcttcccta
     2641 tccttctggt cgactacaca tgggccacgt acgtaactac accatcggtg acgtgatcgc
     2701 ccgctaccag cgtatgctgg gcaaaaacgt cctgcagccg atcggctggg acgcgtttgg
     2761 tctgcctgcg gaaggcgcgg cggtgaaaaa caacaccgct ccggcaccgt ggacgtacga
     2821 caacatcgcg tatatgaaaa accagctcaa aatgctgggc tttggttatg actggagccg
     2881 cgagctggca acctgtacgc cggaatacta ccgttgggaa cagaaattct tcaccgagct
     2941 gtataaaaaa ggcctggtat ataagaagac ttctgcggtc aactggtgcc cgaacgacca
     3001 gaccgtactg gcgaacgaac aagttatcga cggctgctgc tggcgctgcg ataccaaagt
     3061 tgaacgtaaa gagatcccgc agtggtttat caaaatcact gcttacgctg acgagctgct
     3121 caacgatctg gataaactgg atcactggcc agacaccgtt aaaagcatgc agcgtaactg
     3181 gatcggtcgt tccgaaggag tggagatcac cttcaacgtt aacgactatg acaacacgct
     3241 gaccgtttac actacccgcc cggacacctt tatgggttgt acctacttgg cggtagctgc
     3301 gggtcatccg ctggcgcaga aagcggcgga aaataatcct gaactggcgg cctttattga
     3361 cgaatgccgt aacaccaaag ttgccgaagc tgaaatggcg acgatggaga aaaaaggcgt
     3421 cgatactggc tttaaagctg ttcacccatt aacgggcgaa gaaattcccg tttgggcagc
     3481 aaacttcgta ttgatggagt acggcacggg cgcagttatg gcggttccgg gtcacgacca
     3541 gcgcgactac gagtttgcct ctaaatacgg cctgaacatc aaaccagtta tcctggctgc
     3601 tgacggctct gagccagatc tttctcagca agccctgact gaaaaaggcg tgctgttcaa
     3661 ctctggcgaa ttcaacggtc ttgaccatga agcggccttc aacgccatcg ccgataaact
     3721 gactgcgatg ggcgttggcg agcgtaaagt gaactaccgc ctgcgcgact ggggtgtttc
     3781 tcgtcagcgt tactggggcg cgccgattcc gatggtgacg ctggaagacg gtaccgtaat
     3841 gccgaccccg gacgaccagc tgccggtgat cctgccggaa gatgtggtga tggacggcat
     3901 taccagcccg attaaagcag atccggagtg ggcaaaaact accgttaacg gtatgccagc
     3961 gctgcgtgaa accgacactt tcgacacctt tatggagtcc tcctggtact atgcgcgcta
     4021 cacttgccca gagtacaaag aaggtatgct ggattccgaa gcggctaact actggctgcc
     4081 ggtggatatc tacattggtg gtatcgaaca cgccattatg cacctgctct acttccgctt
     4141 cttccacaaa ctgatgcgtg atgcaggcat ggtgaactct gacgaaccag cgaaacagtt
     4201 gctgtgtcag ggtatggtgc tggcagatgc cttctactat gttggcgaaa acggcgaacg
     4261 taactgggtt tccccggttg atgctatcgt tgaacgtgac gagaaaggcc gtatcgtgaa
     4321 agcgaaagat gcggcaggcc atgaactggt ttataccggc atgagcaaaa tgtccaagtc
     4381 gaagaacaac ggtatcgacc cacaggtgat ggttgaacgt tacggcgcgg acaccgttcg
     4441 tctgtttatg atgtttgctt ctccggctga tatgactcta gaatggcagg aatccggtgt
     4501 ggaaggggct aaccgcttcc tgaaacgtgt ctggaaactg gtttacgagc acacagcaaa
     4561 aggtgatgtt gcggcactga acgttgatgc gctgactgaa gatcagaaag cgctgcgtcg
     4621 cgatgtgcat aaaacgatcg ctaaagtgac cgatgatatc ggccgtcgtc agaccttcaa
     4681 caccgcaatt gcggcgatta tggagctgat gaacaaactg gcgaaagcac caaccgatgg
     4741 cgagcaggat cgcgctctga tgcaggaagc gctgctggcc gttgtccgta tgcttaaccc
     4801 gttcaccccg cacatctgct tcacgctgtg gcaggaactg aaaggcgaag gcgatatcga
     4861 caacgcgccg tggccggttg ctgacgaaaa agcgatggtg gaagactcca cgctggtcgt
     4921 ggtgcaggtt aacggtaaag tccgtgccaa aatcaccgtt ccggtggacg caacggaaga
     4981 acaggttcgc gaacgtgctg gccaggaaca tctggtagca aaatatcttg atggcgttac
     5041 cgtgcgtaaa gtgatttacg taccaggtaa actcctcaat ctggtcgttg gctaagcgcg
     5101 ggaggaagcg tgcgatatct ggcaacattg ttgttatctc tggcggtgtt aatcaccgcc
     5161 gggtgtggct ggcatctgcg tgataccacg caggttcctt ccactatgaa ggtcatgatc
     5221 ctggactcag gcgatccgaa cgggccatta agccgtgcgg tgcgtaacca gttacgtctg
     5281 aatggtgtcg agttgcttga taaagaaacc acgcgtaagg acgttccatc cctgcgtttg
     5341 ggtaaagtga gcatcgcgaa agataccgca tcggtattcc gtaacggtca aacagcagag
     5401 tatcagatga tcatgacggt gaatgcgacc gtgttgatcc ccggccgtga tatctacccg
     5461 attagcgcca aagtcttccg ttcgttcttt gataacccgc aaatggcgtt agcgaaagat
     5521 aacgaacaag acatgatcgt aaaagagatg tacgaccgtg ctgccgaaca gctgattcgt
     5581 aagctgccaa gcatccgtgc tgcggatatt cgttccgacg aagaacagac gtcgaccaca
     5641 acggatactc cggcaacgcc tgcacgcgtc tccaccacgc tgggtaactg atgattcggt
     5701 tgtacccgga acaactccgc gcgcagctca atgaagggct gcgcgcggcg tatcttttac
     5761 ttggtaacga tcctctgtta ttgcaggaaa gccaggacgc tgttcgtcag gtagctgcgg
     5821 cacaaggatt cgaagaacac cacacttttt ccattgatcc caacactgac tggaatgcga
     5881 tcttttcgtt atgccaggct atgagtctgt ttgccagtcg acaaacgcta ttgctgttgt
     5941 taccagaaaa cggaccgaat gcggcgatca atgaacaact tctcacactc accggacttc
     6001 tgcatgacga cctgctgttg atcgtccgcg gtaataaatt aagcaaagcg caagaaaatg
     6061 ccgcctggtt tactgcgctt gcgaatcgca gcgtgcaggt gacctgtcag acaccggagc
     6121 aggctcagct tccccgctgg gttgctgcgc gcgcaaaaca gctcaactta gaactggatg
     6181 acgcggcaaa tcaggtgctc tgctactgtt atgaaggtaa cctgctggcg ctggctcagg
     6241 cactggagcg tttatcgctg ctctggccag acggcaaatt gacattaccg cgcgttgaac
     6301 aggcggtgaa tgatgccgcg catttcaccc cttttcattg ggttgatgct ttgttgatgg
     6361 gaaaaagtaa gcgcacattg catattcttc agcaactgcg tctggaaggc agcgaaccgg
     6421 ttattttgtt gcgcacatta caacgtgaac tgttgttact ggttaacctg aaacgccagt
     6481 ctgcccatac gccactgcgt gcgttgtttg ataagcatcg ggtatggcag aaccgccggg
     6541 gcatgatggg cgaggcgtta aatcgcttaa gtcagacgca gttacgtcag gccgtgcaac
     6601 tcctgacacg aacggaactc accctcaaac aagattacgg tcagttagtg tgggcagagc
     6661 tggaagggtt atctcttctg ttgtgccata aacccctggc ggacgtattt atcgacggtt
     6721 gatatgaaat ctttacaggc tctgtttggc ggcacctttg atccggtgca ctatggtcat
     6781 ctaaaccccg tggaaacgct ggcgaatttg attggtctga cgcgggtcac aatcatccct
     6841 aataatgttc ctccgcatcg tccccagccg gaagcgaaca gcgtgcagcg taaacacatg
     6901 cttgaactgg cgattgccga caagccatta tttactcttg atgaacgcga gctaaagcgc
     6961 aatgccccct cttacactgc gcaaacactg aaagagtggc ggcaggaaca aggaccggac
     7021 gtgccgctgg cgtttattat tggtcaggat tcactgctga cctttccgac ctggtacgaa
     7081 tacgaaacga tactcgacaa tgcacatttg atcgtctgtc ggcgtccagg ttacccactt
     7141 gaaatggcgc aaccgcaata ccagcaatgg ctggaagatc atttgacaca taaccaggaa
     7201 gatcttcacc ttcagcctgc cggtaaaatt tatctggctg aaacgccgtg gtttaacatc
     7261 tcggcgacca tcatccgcga acgtttgcaa aacggtgaat cgtgtgagga tttattgccg
     7321 gaaccggtac tgacttacat taaccaacaa ggcttgtatc gctgatacct gtcgttacgg
     7381 agggcatgat gcgactgtgg ttaattcgtc atggtgaaac gcaagcgaat atcgatggtc
     7441 tttacagcgg tcatgc
//
LOCUS       DAJVUN010000188         7444 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.188, whole genome shotgun sequence.
ACCESSION   DAJVUN010000188 DAJVUN010000000
VERSION     DAJVUN010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.188"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(194..556)
                     /locus_tag="OQQ76_003462"
     CDS             complement(194..556)
                     /locus_tag="OQQ76_003462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibL family ribosome-associated protein"
                     /protein_id="HCS1969820.1"
                     /translation="MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT
                     LEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTA
                     LGREMGLQEMTGFSKTAF"
     gene            841..1050
                     /locus_tag="OQQ76_003463"
     CDS             841..1050
                     /locus_tag="OQQ76_003463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969821.1"
                     /translation="MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPD
                     ESVPLYLQRLEYYRRLYRPKQVEGQ"
     gene            complement(1062..1649)
                     /gene="mtlR"
                     /locus_tag="OQQ76_003464"
     CDS             complement(1062..1649)
                     /gene="mtlR"
                     /locus_tag="OQQ76_003464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol operon repressor MtlR"
                     /protein_id="HCS1969822.1"
                     /translation="MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRS
                     FLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI
                     NRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSL
                     YAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK"
     gene            complement(1649..2797)
                     /gene="mtlD"
                     /locus_tag="OQQ76_003465"
     CDS             complement(1649..2797)
                     /gene="mtlD"
                     /locus_tag="OQQ76_003465"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709374.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HCS1969823.1"
                     /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH
                     SYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKG
                     LVKRKEQGNESPLNIIACENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRI
                     VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPSMELTDNLMAFVERKLFTLNT
                     GHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK
                     ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHF
                     RSEDDPQAQELAALIADKGPQAALAQISGLDANSEVVSEAVTAYKAMQ"
     gene            complement(3027..4940)
                     /gene="mtlA"
                     /locus_tag="OQQ76_003466"
     CDS             complement(3027..4940)
                     /gene="mtlA"
                     /locus_tag="OQQ76_003466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HCS1969824.1"
                     /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLP
                     NETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMI
                     AGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKM
                     LAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIE
                     ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG
                     GMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILL
                     KTSKVKEEDDIEAATRRMQDMKAESKGTSPLSAGDVTNDLSHVRKIIVACDAGMGSSA
                     MGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT
                     NFLDSGLYTSLTERLVAAQRHTENEVKVKDSLKDSFDDSSANLFKLGAENIFLGRKAA
                     TKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT
                     GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT
                     SVDEVLELLAGRK"
     gene            5477..5839
                     /locus_tag="OQQ76_003467"
     CDS             5477..5839
                     /locus_tag="OQQ76_003467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3302 domain-containing protein"
                     /protein_id="HCS1969825.1"
                     /translation="MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAI
                     HTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIASLSDRISRL
                     EHQLAAEKKTDYSTFPEI"
     gene            5842..6978
                     /locus_tag="OQQ76_003468"
     CDS             5842..6978
                     /locus_tag="OQQ76_003468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1969826.1"
                     /translation="MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAGLGGVFLVSGLI
                     LLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQAR
                     VDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
                     ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLE
                     QTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGD
                     DAEVVFNALPRQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPGTDGVLGTIELDPND
                     DIDALLDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH"
BASE COUNT         1813 a         1858 c         1850 g         1923 t
ORIGIN      
        1 ttctatatat ttttattgtt tataggtggc tatttcggta aaaatgcatt ttcagaatat
       61 caaccagcgg taaatcgacg taaagggagt gaattgtttg gtaattaggc gagtagacag
      121 gagagtcccc gcattgacca gctaaggcaa gccagatgcg ggttgatatg atcgaaccag
      181 tcgtctgagg cgcttaaaac gcagtcttag agaatccagt catctcctgc aggcccattt
      241 cacggcccag cgcggtcatt gggtgcacaa ccaccagtcc gcgaacactt ttcttcagct
      301 tgcccatatc agcctgctct tttttggtaa ttgcgcgctg aaacggcatc ttcatcagct
      361 tctgtgcttc tttactcagt ttttggctat gaacctcacg caggcgagca atttctgctt
      421 ccagcgtggc tttctctttt tccagctcgg catatttgtc tgcggcttca accagcgaca
      481 gatcggcctg ctggtggcgg atggcgtcca ggcgatcgct gagacgtttg atttcgtttt
      541 tttcgacttc tttcatgtga tggcttctga taaagataaa tttatagccc ctagtatgcg
      601 cgaccaggtg ctttgttcac aactgatgac attgtaatag ttctgcaacg taatcattaa
      661 catgctcaaa aactacgcaa ttcgttgatt aattaagaaa tctatagaaa aaagataata
      721 aacagcagcg gatgattatt gaggattcag cacgttttcc ttaatgtcat ctttaccggg
      781 aacctaaact aaaattggtg gccgcgcatt cccggcgcgg ggtaatacgg agatatcatc
      841 atgggcaaat taggtgaaaa cgttccgctt cttatcgata aagccgtaga tttcatggca
      901 tcaagccagg cgttccggga gtatctgaaa aaacttcctc cccgtaacgc gattccgtcc
      961 ggaatacccg atgaaagcgt gccgttatat ctacaacgtc tggagtatta tcgtcggctt
     1021 tatcggccga agcaggtaga ggggcagtaa gcagacgttg cttacttttg aaaggctttt
     1081 tttaagctga ttttggaaat cagctcagtc agtgaaagga ccattgttga tcgcacagcc
     1141 tgttgatagc gctgaatttg cattgcatac aaactggagt ctgctggttc aaactgtggc
     1201 ggcggtggta acgccgccac gcagtgcagt tcaccaaagg gtccaaggat ttcgtcgtcg
     1261 gtaaaggcgt actcgttgcc gtcgtgattt agctcttcac gcaatgccat cagcagttcc
     1321 gcatcttcgt attcctggcg gttaatgacg cccaacccgt aaatgagttt taaacgcaca
     1381 gaaagatcgc ccagcggacc gtcgccgtcg agtaacggtt ctacagcata cttcaccgcg
     1441 taatcgtctt tgcggaatac ctgaagcacc agaagattta ccgcctcggt caaaagctcg
     1501 acggcggtga tcagaaagct tcgcacggtt ttgccagcat tcagacgctc aagcacacgg
     1561 ttttcaaagg cctgggtttg ttccattgtt gcctgcatat ctgacaatct gttattcggg
     1621 cgcagggtgt cctgcgcctg gtccaccatt attgcattgc tttataagcg gttaccgcct
     1681 cggatacaac ctcactgttg gcatcaagac cggaaatctg tgccagcgcc gcctgcggac
     1741 ctttgtcagc gatcagtgct gccagttcct gagcctgcgg atcatcttca ctgcggaagt
     1801 gcattgcacc agcaattccc tgaatcagat tcttgtgcgg aaggctgtat tccagcgtac
     1861 cgagcagtgg cttgatcaga cggtcgccag cactcagttt acgtagcggc tgacggccta
     1921 cgcgctctac atcatctttc agatacgggt tctcaaaacg accgaggatt ttctggatgt
     1981 acgccgcatg tttgtctgcg tcaaagccgt agcgcttgat cagtaccgca ccactttctt
     2041 ccatcgcacc ttttaccacc gcgcggattt tctcgtcgag aatagcgtca cgaatggtct
     2101 gatgaccggc cagttttccg aggtacgcgg ttatagcatg acccgtgttc agggtgaaga
     2161 gtttacgttc gacaaatgcc atcaggttgt cggttaactc catgcttggg atgttcggca
     2221 gtgcgccttt gaactgcgtt ttatcgacaa tccattcgct gaaagtttct accgtcactt
     2281 ccagcggatc gttagttgcc gaagccgaag gcggtacgat gcggtcaacg gcggaatcga
     2341 caaagccaac gtgttcttct acccacgctt tggcgtcttc cggcagggcg ttcatcacat
     2401 ggcctttcag ctgcgtggta ccgcgtacca tgttttcaca ggcgatgatg ttcagcgggg
     2461 attcattacc ttgttctttg cgtttcacca gccctttggc gatagccgga gcaatacgtt
     2521 ccagcacaac cgggccaacg gcggtagtga ctaaatcgac ctgagcaatc agatcaacga
     2581 catcatcacc aatgctgctg acagcattga cgccggaaac ggtatctacc tgctcggttt
     2641 caccaaccac atgaacctga tagctatgac gggcattcag ggcatcaagt accacctgat
     2701 tgacatcggc aaacgtcagt tggatacccg cgtctgccag cagtttaccg ataaagccac
     2761 gaccgatatt acctgcgcca aaatgtaatg ctttcatagt attaaccttc atcaatgttt
     2821 ttacccgaga gggctggggt gaggcttttc cctcacccaa accctctccg tgaggagagg
     2881 ggcagcgccg gatgcggcgt aagcgcctta tccggcctac aagaacgtgc aaattcaaca
     2941 aatcgtgatg catcctgtag gcctgataag cgtagcgcat caggcaatta accccacctt
     3001 ctccatgtgg agagggtggg attggattac ttacgacctg ccaacagttc cagcacttca
     3061 tccacgctgg tggtgtgtgc cagacgctcg atgacggact catcatccag tgcattggtc
     3121 aggctggtga taacctgaat gtgctcgttg ttacgggctg caataccaat caccagacgg
     3181 gcaatgtcat cttcctcttc accgaagcgc acgccttccg ggtactggca gaacaccacg
     3241 cccgttttca gtacgcgatc tttcgcttca accgtaccgt gtggcaccgc gatagactca
     3301 cccagataag tcggggtcag tttttcacga tccagcatcg cctgaacgta ttccggctca
     3361 acgtaaccgc ctttcaccag ctgctcgcca gcaaaacgaa tcgcttcttc tttggttgct
     3421 gctttgcgac cgaggaagat gttctccgcg cccagtttga acaggttagc actggaatcg
     3481 tcaaagctgt ctttcagact gtctttcact ttcacttcgt tttcagtatg gcgctgggca
     3541 gcaaccagac gttcggttag gctggtgtac aggccgctgt cgaggaagtt ggtcagcgaa
     3601 atatgctgtg cctgcggaac ctggcgcata gcgcgttcgg tcaggtcacg gtgagtgatg
     3661 acgaggtcca catctggcgg caggttgttg atcgcgctgt tagtgaccga aatctgcgac
     3721 agacctgcat cctgaatttt cttacgcagc acgcctgcgc ccatcgcact tgaacccata
     3781 ccggcgtcac aggcaacgat gattttacgt acgtggctca ggtcgttagt cacatcgccc
     3841 gcagacagcg gagatgtgcc tttagactca gctttcatgt cctgcatacg acgagttgct
     3901 gcttcaatat catcttcttc tttcactttg ctggttttca gcaaaatagc agagacaacg
     3961 aaggagacag ccatcgccgc acacacaccc gcgatgttag cgaaataagc accttttggt
     4021 gtcatcgcca gtacagcaag gatagaaccc ggagatgccg gagaaaccag accaccgccc
     4081 aggatagtca gcgtgaacac gccagtcata ccgccgagga tgactgcgag gatcagacgc
     4141 ggattcatca gcacatacgg gaagtagatt tcgtggatac cacccaggaa gtggatgatt
     4201 gccgcaccgc ccgcagactg tttagcgcta ccacgaccaa agaacatgta cgccagcagc
     4261 acgcccatac ctggacctgg gttagcttca atcaggaaga agattgattt acccagttca
     4321 tgggactgct gaatacccag cggcgagaag ataccgtggt taatggcgtt gttgaggaac
     4381 aggattttcg ccggttcaac aaagatagac gccagcggca gcatgtcatg gacaaccatg
     4441 aagttaacgc ccgcagccag cattttggac agggcttcaa caatcgggcc aatgccgagg
     4501 aatgccagaa tagcgaggat catcccgatg atgcctgcgg agaagttatt caccagcatc
     4561 tcaaaaccgg atttgatctt accgtctacc cagcggtcga agtgcttaat gcaccagccg
     4621 cccagcggac ctgcaatcat agaaccgagg aacatcggca tgtctgcgcc gacgataacg
     4681 cccatggtgg tgatggcacc gactacgccg ccacgttcgc cgcctaccag cttaccaccg
     4741 gtataaccga tcagcagcgg caggagataa gtgatcatcg gcccgaccag cttcgccagc
     4801 gtctcgttcg gtaaccaccc tgttggaata aataacgcgg tgatgatacc ccacgcgata
     4861 aacgcgccga tatttggcat caccatgttg ctgaggaaac gaccaaagct ttgcactttg
     4921 atcttaatat cggatgacat aaaaacaccc cttcttatgt ttgctgtcgc gcaggctgga
     4981 agcccgaggt tttttgttaa tgtggcggca gaggtagccg gaccttgtag atactgcgaa
     5041 atctggcact gaatcggtta actgtccagt cgacggcctt ttgtgtgata ttaatcacat
     5101 aaatataggg ggtagagagg taattgacgt gacgttcatc acaaaacgct tgtgtaaaaa
     5161 agcaacaagg cggcgatttt cgctaaaaat ggcatttaaa tgtgagtagt gtcacatttt
     5221 tgttttgatg gtttgttgaa tctttgtgat ctgaatcaca agatattttc ttacggcgtt
     5281 cacctgatgt gatctacagc atgttatgcc ttcgtcatac aatcgttatg taactaagca
     5341 actcatcacc tctaaaaatt attctttggt gttatggcga gaatcgcgaa cccggattat
     5401 tgtcaaaata tcagcctgac tcccttctgg ctgccagccc aaaaacaaca ctgataaacg
     5461 tgaatccgag gcagatatgt ttctaaacta tttcgcgttg ggagtgctga tcttcgtctt
     5521 tctggtgatt ttttatggaa tcatcgcgat acatgacatc ccttatctga ttgccaaaaa
     5581 gcgcaatcac ccccatgccg acgctattca tacggcgggc tgggtgagcc tgtttactct
     5641 gcatgttatc tggccgtttc tgtggatctg ggcgacgctc tatcaaccgg agcgtggctg
     5701 gggtatgcag tcacatgttg cgtcgcagga gaaagcgact gacccggaaa tcgcctcact
     5761 ttctgaccga atttcccggc tggagcatca actcgccgcc gagaaaaaga ctgactattc
     5821 cacgttcccg gagatctaat tatggatcta ttgattgttt taacttatgt ggcgctggcg
     5881 tgggcggtct ttaaaatctt ccgcattccg gtaaatcagt ggacgctggc gacggcgggg
     5941 ctgggaggcg tgtttctggt gagtggtttg attttgttga tgaactacaa ccacccttac
     6001 acttttaccg cgcaaaaggc agtgatagcg atccctatca cgccacaggt gacgggaatt
     6061 gttactgaag tcactgacaa gaataatcag cttattcaaa agggcgaggt gctttttaag
     6121 ctcgacccgg ttcgttacca ggcgcgagtt gacagacttc aggctgacct gatgacggcg
     6181 acgcataata taaagacgct gcgtgcgcag ctcactgaag cgcaggccaa caccacccag
     6241 gtttcagcgg agcgcgaccg tctgtttaaa aattatcaac gttacttgaa aggcagccag
     6301 gcggcggtga atccgttctc ggaacgtgac atcgacgatg cgcggcaaaa tttcctcgcg
     6361 caggatgcgc tggtgaaagg ctcggtggcg gagcaggcgc agatccagag ccagctcgac
     6421 agtatggtta acggcgagca atcgcagatt gtgagcttaa gagcgcaact tactgaagca
     6481 aaatataacc ttgagcagac tgtcattcgc gcgccgagca atggctacgt tactcaggta
     6541 ctgatccgcc caggtacata cgcagctgcc ttgccgctgc gtccggtgat ggtcttcatc
     6601 cccgagcaaa aacggcaaat tgtcgcccaa tttcggcaaa actcgctgtt acgtctgaaa
     6661 cccggcgatg atgcggaagt ggtgtttaac gcgctaccta ggcaggtgtt tcacggcaaa
     6721 ctgactagta ttttacctgt cgtgccaggc ggttcttatc aggcgcaggg gggattgcaa
     6781 tcattaacgg tcgtgcccgg cacggacggt gtgctgggaa ccattgaact ggaccctaac
     6841 gatgatatcg atgccttact cgacggcatc tacgcccagg tggcggttta ctccgaccat
     6901 ttcagccatg tttcggtgat gcggaaagtg ctgctaagaa tgaccagctg gatgcattat
     6961 ctttatttgg atcattgagg gggagggggg agattatgga actttgctcc ttgtaaggac
     7021 taattatttt tgcatattac ttcattagct gcgatgattt ttctttaata ttcattatgt
     7081 taataagttc tggatgagtg tgctctcatt ggatttttta tccgtcttgt tctgccgcag
     7141 gatgagacta tacatcgtcg agatcgcaat gatgatatga gttgttcctc ctgcgacggc
     7201 tctaatcaaa aaagagcagg agtgcttttc catctattgc gatgatggct ttattatctg
     7261 aaggatgaca gtcacattta aaaaatattt aatctataga tcacaatgta gggtcatgga
     7321 atatatgtat acaactattt tcttcttcac ttttaattat cgtattcatt ataaaactaa
     7381 gttaaaaaaa ctcctggaga gtgagttact aatatatttt taaataaaat taagttatca
     7441 ttca
//
LOCUS       DAJVUN010000189         7439 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.189, whole genome shotgun sequence.
ACCESSION   DAJVUN010000189 DAJVUN010000000
VERSION     DAJVUN010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.189"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            169..276
                     /locus_tag="OQQ76_003469"
     CDS             169..276
                     /locus_tag="OQQ76_003469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588455.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969827.1"
                     /translation="MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG"
     gene            complement(329..1087)
                     /locus_tag="OQQ76_003470"
     CDS             complement(329..1087)
                     /locus_tag="OQQ76_003470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiY family protein"
                     /protein_id="HCS1969828.1"
                     /translation="MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFE
                     GNLNAGYLAQSGNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAAGG
                     RSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRY
                     DKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHF
                     GLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM"
     gene            1374..2303
                     /gene="pfkB"
                     /locus_tag="OQQ76_003471"
     CDS             1374..2303
                     /gene="pfkB"
                     /locus_tag="OQQ76_003471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416237.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase II"
                     /protein_id="HCS1969829.1"
                     /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV
                     ARAIAHLGGSATAIFPAGGATGEHLISLLADENVPVATVEAKDWTRQNLHVHVEASGE
                     QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISASQKQG
                     IRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA
                     KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV
                     RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR"
     gene            2404..2694
                     /gene="ghoS"
                     /locus_tag="OQQ76_003472"
     CDS             2404..2694
                     /gene="ghoS"
                     /locus_tag="OQQ76_003472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HCS1969830.1"
                     /translation="MASGDLVRYVITVMLHEDTLTEINELNNYLTHDGFLLTMTDDEG
                     NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK"
     gene            2800..3660
                     /locus_tag="OQQ76_003473"
     CDS             2800..3660
                     /locus_tag="OQQ76_003473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HCS1969831.1"
                     /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV
                     KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS
                     AFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAA
                     EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR
                     ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA
                     QQSLDRLLAA"
     gene            complement(3701..4237)
                     /locus_tag="OQQ76_003474"
     CDS             complement(3701..4237)
                     /locus_tag="OQQ76_003474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YniB family protein"
                     /protein_id="HCS1969832.1"
                     /translation="MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENQE
                     GINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ
                     DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL
                     PVICIAAGYVFFSLLGFI"
     gene            4384..5052
                     /gene="hxpB"
                     /locus_tag="OQQ76_003475"
     CDS             4384..5052
                     /gene="hxpB"
                     /locus_tag="OQQ76_003475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HCS1969833.1"
                     /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN
                     ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA
                     LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK
                     LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK
                     DLLG"
     gene            5215..5805
                     /locus_tag="OQQ76_003476"
     CDS             5215..5805
                     /locus_tag="OQQ76_003476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707386.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCS1969834.1"
                     /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL
                     PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA
                     LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV
                     WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY"
     gene            5938..7329
                     /gene="tcyP"
                     /locus_tag="OQQ76_003477"
     CDS             5938..7329
                     /gene="tcyP"
                     /locus_tag="OQQ76_003477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine/sulfocysteine:cation symporter"
                     /protein_id="HCS1969835.1"
                     /translation="MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFG
                     LALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG
                     KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVFD
                     LSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAA
                     IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFA
                     VHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA
                     ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGG
                     ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKA
                     ILDSEDDAELAHR"
BASE COUNT         1871 a         1812 c         1836 g         1920 t
ORIGIN      
        1 ctattttcga tatatatgtt gatgcataat attatttttt cataaaacgc agaaacagtg
       61 accaggtgta caacgccacc caacggctgt aataacaaaa aatcccttga tgcccgtccc
      121 ttttgttaca ctccgttatc acgcacaaga gatatgcagg acactggtat gccgactaaa
      181 cgctttgata aaaaacactg gaagatggtg gtggtgctac tggcaatctg tggcgctatg
      241 ttgttgctac gttgggcagc aatgatttgg ggctgagcag tgacaaacga agacagccag
      301 accgcataac acggtccggc agataatttt acatgctgta gcccagcgat aaggttgtcc
      361 gacggtcggt atgttccggt gcagactctg gaggttcaga gttccatgta acgttgtaag
      421 ccaccttcag tccaaaatgt tcattaatag caacatttaa tgcgctttcg gagttcagcg
      481 ttgtgtcttc cgcgccaaag accgaaacac cctgcgtaaa tttagcgttg tcagtcaact
      541 gccatgcata agccccggag gcatagccca gcggctgagt ttcactggca ttgtcggtat
      601 atttgtcgta acgcacacct ggaccgaatt caaagcggaa actgtgtacc gggccattca
      661 aaaactgacg accataaccc gcggtcaaca catcgcgctc tcgatagccg ttataacggt
      721 ctgtcagcca gcttgcctga ccaaataaat agtcataatc agttaaatta aagcggctac
      781 gcccgcccgc cgcatatttt tctgaagaac gctcatcatt agaagaagta ttactggcgt
      841 tcccccacag cgaccaggca gtggtttgtc cataccaggt catggtggtg tcagccgtaa
      901 gtgaggagct tttcgtattg cctgattgtg caagatatcc tgcgttcaga ttaccttcga
      961 aaggtttttt agcgctggca ggatcgtcca tgacagtaaa aacggaatca tcggcagctg
     1021 cattcagtga cgcaaacatg ccccccgcca acataacgat ggcaggaact gtcttcaaaa
     1081 gcttcattta tcaagagtcc gtacaacaaa aaaagagacc atcgcggtcc cggaaacttt
     1141 cttaaggatc aaagattagc gtccctggaa aggtaacgaa ttataaaaag gcgcgaataa
     1201 cttagcaatg tattcttatt tcattttttg aataagcatg tggcgaaaac agatttttat
     1261 ttatatatat ttatctgcaa aattttaaat aaagctccaa taaatcatat tgttaatttc
     1321 ttcactttcc gctgattcgg tgccagactg aaatcagcct ataggaggaa atgatggtac
     1381 gtatctatac gttgacactt gcgccctctc tcgatagcgc aacaattacc ccgcaaattt
     1441 atcccgaagg aaaactgcgc tgtaccgcac cggtgttcga acccgggggc ggcggcatca
     1501 acgtcgcccg cgccattgcc catcttggag gcagtgccac agcgatcttc ccggcgggtg
     1561 gcgcgaccgg cgaacacctg atttcactgt tggcggatga aaatgtcccc gtcgctactg
     1621 tagaagccaa agactggacc cggcagaatt tacatgtaca tgtggaagca agcggtgagc
     1681 agtatcgttt tgttatgcca ggcgcggcat taaatgaaga tgagtttcgc cagcttgaag
     1741 agcaagttct ggaaattgaa tccggggcca tcctagtcat aagcggaagc ctgccgccag
     1801 gtgtgaagct ggaaaaatta acccaactga tttccgcttc gcaaaaacaa gggatccgct
     1861 gcatcgtcga cagttctggc gaagcgttaa gtgcagcact ggcaattggt aacatcgagt
     1921 tggttaagcc taaccaaaaa gaactcagtg cgctggtgaa tcgcgaactc acccagccgg
     1981 acgatgtccg caaagccgcg caggaaatcg ttaatagcgg caaggccaaa cgggttgtcg
     2041 tttcccttgg tccacaagga gcgctgggtg ttgatagtga aaactgcatt caggtggtgc
     2101 caccaccggt gaaaagccag agtaccgttg gcgctggtga cagcatggtc ggcgcgatga
     2161 cactgaaact ggcagaaaat gcctctcttg aagagatggt ccgttttggc gtagctgcgg
     2221 ggagtgcagc cacactcaat cagggaacac gtctgtgctc ccatgacgat acgcaaaaaa
     2281 tttacgctta cctttcccgc taacaaaaac attcccccag cattggggga atcaccacca
     2341 acctgtcggc aacgcgtttc tccgactatg ctcaaaagtc atgtgataac aaaggggtga
     2401 actatggcca gtggcgatct tgtccgttat gtcataaccg tcatgttgca tgaggataca
     2461 ttgactgaaa ttaacgagtt gaataattac ctgactcacg acggtttttt gctcaccatg
     2521 acggatgatg agggaaatat ccatgagctg gggactaaca cttttggact tatcagtacc
     2581 caaagtgaag aagaaattag agaactggtt tcggggctta cccaaagtgc aaccggcaaa
     2641 gatcctgaaa tcaccatcac gacctgggag gaatggaata gcaacagaaa ataaatggtt
     2701 tttgggcaat aatcagtctg tggtgtgcgt tagctcgtgt ttttacaccg cattcttgcg
     2761 ctaaccttat gatctggcag acaacatggg agagacatca tgtggcaggc aatcagtcgt
     2821 cttttgagcg agcagttagg tgaaggcgaa atcgaactgc gtaatgaact gcctggcgga
     2881 gaagtccatg ccgcatggca tttgcgctat gcaggacatg actttttcgt caaatgtgat
     2941 gaaagggaac tgcttcccgg ttttaccgcc gaagccgacc aactggagtt actgtcgcgt
     3001 agtaaaaccg tcaccgtgcc taaggtttgg gcagtaggcg ctgaccgtga ctacagtttt
     3061 ctggtgatgg attatctccc acctcgtccg ctggatgcgc atagcgcatt tattcttggt
     3121 cagcaaattg cgcgtttaca tcaatggagt gaccaaccac aatttggcct cgattttgat
     3181 aactcgctct ccacaactcc acagcccaac acctggcaac gtcgctggtc aacgtttttt
     3241 gctgaacaac ggattggctg gcagttggaa ctggcagcag agaaagggat cgctttcggc
     3301 aatatcgacg ccatcgtcga gcatattcag cagcgtctgg cctcgcatca accgcagcct
     3361 tctctgttgc acggcgattt atggtccggc aactgtgcgc tgggtccgga tggcccgtac
     3421 attttcgacc ctgcctgcta ctggggtgac cgagagtgcg acctggcgat gttaccgctg
     3481 catactgaac agccgccaca aatctatgac ggctatcagt cagtatcccc gctacctgcc
     3541 gatttccttg aacgtcaacc ggtttaccaa ctctacacgc tgttaaatcg tgcaaggtta
     3601 tttggcggtc agcatttggt tattgctcag cagtcactgg atagattatt agcagcatga
     3661 tatgggttga agataatggc cgctctgtgc ggccttttga ttaaataaac ccaagcagag
     3721 aaaagaacac ataacctgca gcaatacaaa taaccggcag gatatacagt gagaaaaact
     3781 gcaggaaaat agtatggtgc ggaacaacaa tacgggactc aatttgttca cgcgttagcc
     3841 cctcttcccc tttggctttt tccagaatga gttgatcttc aacaccttcc cgcaagaagc
     3901 gcgcctggcg actcattcgg gcaccggaat cctgcaacgc cagtccgaca aaaatcagga
     3961 tgaaaatcac ccagaacata acgttcacgc caccattaaa attgggcgtc ggggagttat
     4021 accagaacag attcaaaaaa ggcgtattcg cctgcatcat atcgatcatg acatgagtaa
     4081 agtcgagcat gaccgcatta atgccttcct ggttttcctg ccgggtattc ataaatttca
     4141 gcaaagaaat caatgtagag atcaatgcag gtataaaaat cacccaaccc aaaatccttt
     4201 tcaaaacagc aatgcgtcca gcttgttgat acgtcatgag ttctccttga ttaagacgcg
     4261 tcgtttcact tagtttacct gtagatatct gttttcgccc attctttaaa ggcgatatga
     4321 taggcgctta atcataagca cggcttaata ccttacacat aatgctctaa aggagaggtt
     4381 gtaatgtcaa ccccgcgtca gattcttgct gcaatttttg atatggatgg attacttatc
     4441 gactcagaac ctttatggga tcgagccgaa ctggatgtga tggcaagcct gggggtggat
     4501 atctcccgtc gtaacgagct gccggacacc ttaggtttac gcatcgatat ggtggtcgat
     4561 ctttggtacg cccggcaacc gtggaatggg ccaagccgtc aggaagtagt agaacgggtt
     4621 attgcccgtg ccatttcact ggttgaagag acacgtccat tattaccagg cgtgcgcgaa
     4681 gctgttgcgt tatgcaaaga acaaggttta ttggtgggac tggcctccgc gtcaccacta
     4741 catatgctgg aaaaagtgtt gaccatgttt gacttacgcg acagtttcga tgccctcgcc
     4801 tcggctgaaa aactgcctta cagcaagccg catccgcaag tatatctcga ctgcgcagca
     4861 aaactgggcg ttgacccact gacctgcgtg gcgctggaag actcggtaaa tggcatgatc
     4921 gcttctaaag cagcccgcat gcgttccatc gtcgttcctg cgccagaagc gcaaaatgat
     4981 ccacgttttg tattagcaaa cgtcaaactc tcatcgctga cagaactcac cgcaaaagac
     5041 cttctcggtt aatgaccagg ggcagtgatc acgctgcccc tggttcttta tctgaatttg
     5101 cattcaactg acggattaat cgtcaattta agagaaagag ttacaccgtc accacttccg
     5161 tgcactgtat aaaaatccta tactgtacgt atcgacagtt tagtgagttt tatcatgacg
     5221 gcggaaggtc accttctctt ttctattgct tgtgcggtat ttgccaaaaa tgccgagctg
     5281 acgcccgtgc tggcacaggg tgactggtgg catattgtcc cttccgcaat cctgacgtgt
     5341 ttgttaccgg acatcgatca cccaaagtcg tttcttgggc agcgattaaa atggatatca
     5401 aaaccgatcg cccgcgcttt tgggcatcgt ggttttaccc acagtctgct ggcggtattt
     5461 gcgctgctgg caacctttta ccttaaggtt ccggaaggct ggttcattcc ggctgatgcg
     5521 ctacaaggaa tggtgctggg ttatttgagc cacatacttg ccgatatgct gacacccgcc
     5581 ggtgttcccc tgctctggcc atgccgctgg cgtttccgct tgccgatcct agttccccaa
     5641 aagggcaacc aactggaacg ttttatctgc atggcattat ttgtctggtc ggtatggatg
     5701 ccccattcat tacccgagaa cagcgctgtt cgttggtcat cgcaaataat caataccttg
     5761 cagatccagt ttcatcggct tattaagcat caggttgaat actaaaaaga caaaaatcac
     5821 ctttctggaa taagcaattt catttgaata taagagccag ctcacagttc tgttaatctt
     5881 gcgccaacac tatgactgct acgcagtgat agaaataata agatcaggag aacggggatg
     5941 aactttccat taattgcgaa catcgtggtg ttcgttgtac tgctgtttgc gctggctcag
     6001 acccgccata aacagtggag tctggcgaaa aaagtgctgg tgggtctggt gatgggtgtg
     6061 gtttttggcc ttgccctgca taccatttat ggttctgaca gccaggtact taaagattct
     6121 gtacagtggt ttaacatcgt tggtaacggc tatgttcaac tgctgcaaat gatcgttatg
     6181 ccgttagtct tcgcctctat tctgagcgcg gttgcccgtc tgcataacgc atctcagtta
     6241 ggcaaaatca gttttctgac catcggtacg cttttgttta ccacgctgat tgcggcgctg
     6301 gtcggtgtgc tggtcaccaa cctgtttggt ttgacggctg aaggtctggt tcagggtggt
     6361 gcagaaactg cacgtctgaa cgccattgaa agtaactatg ttggtaaagt ctttgatctg
     6421 agcgttccgc agctggtctt gtcctttatc ccgaaaaacc cgtttgccga tcttaccgga
     6481 gccaatccga cgtcaattat cagcgtggta atttttgccg cattcctcgg cgtagctgca
     6541 ttgaaactgc tgaaggatga tgcgccgaaa ggtgaacgcg tcttagccgc tatcgatacc
     6601 ctacaaagct gggtgatgaa actggttcgc cttgtcatgc agttgacccc ttacggcgtt
     6661 ctggctctaa tgaccaaagt ggttgcaggt tctaacttgc aagacatcat caaactggga
     6721 agtttcgttg tcgcgtccta cctcggtctg ctgattatgt ttgcagtgca tggcattctg
     6781 ctgggcatta atggcgtgag tccgctgaag tacttccgta aggtatggcc tgtgctgacg
     6841 tttgccttta ccagccgttc cagtgctgcg tctatcccac tgaatgtgga agcacaaacg
     6901 cgtcgtctgg gcgttcctga atcaatcgcc agtttcgccg cctctttcgg tgcaaccatt
     6961 ggtcagaacg gctgcgccgg tttgtatccg gcaatgctgg cggtgatggt tgcgcctacg
     7021 gttggcatta acccgctgga cccgatgtgg attgcgacgc tggtcggtat tgttaccgtt
     7081 agttccgcag gcgttgccgg tgtcggtggt ggtgcaactt tcgccgcact gattgtgctg
     7141 cctgcgatgg gcctgccagt aaccctggtg gcgctgttaa tctccgttga accgcttatc
     7201 gacatgggcc gtacggcgct aaacgttagt ggctcgatga cagctggcac gctgaccagc
     7261 cagtggctga agcaaaccga taaagccatt ctggatagcg aagacgacgc cgaactggca
     7321 caccgttaat tcttatgctg gcaacggtcc gttttgtata ggggccgttg ctttactttt
     7381 taaatgttcc atcgcggcga tgcatactga ctcatattta aacagatcgt cagcgaaaa
//
LOCUS       DAJVUN010000190         7435 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.190, whole genome shotgun sequence.
ACCESSION   DAJVUN010000190 DAJVUN010000000
VERSION     DAJVUN010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7435
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.190"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            25..150
                     /locus_tag="OQQ76_003478"
     CDS             25..150
                     /locus_tag="OQQ76_003478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001397278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCS1969836.1"
                     /translation="MIGLISALKMPEVKDRDLSALEDAAEDQQRVVRAAQPSRSL"
     gene            239..1699
                     /locus_tag="OQQ76_003479"
     CDS             239..1699
                     /locus_tag="OQQ76_003479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HCS1969837.1"
                     /translation="MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADIL
                     ATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQM
                     DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATG
                     VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAKAVDVKLAQWIEDNVTFP
                     STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE
                     LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAP
                     TLKVQGVDLQDYANRLIERYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF
                     DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF
                     GDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK"
     gene            complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="OQQ76_003480"
     CDS             complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="OQQ76_003480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium delivery protein YdfZ"
                     /protein_id="HCS1969838.1"
                     /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG
                     KTVVVEGCKEKLAPLDLIRLGMN"
     gene            complement(2116..2802)
                     /gene="ydfH"
                     /locus_tag="OQQ76_003481"
                     /pseudo
     CDS             complement(2116..2802)
                     /gene="ydfH"
                     /locus_tag="OQQ76_003481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310176.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YdfH"
     gene            complement(2891..3637)
                     /gene="ydfG"
                     /locus_tag="OQQ76_003482"
     CDS             complement(2891..3637)
                     /gene="ydfG"
                     /locus_tag="OQQ76_003482"
                     /EC_number="1.1.1.298"
                     /EC_number="1.1.1.381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional NADP-dependent 3-hydroxy acid
                     dehydrogenase/3-hydroxypropionate dehydrogenase YdfG"
                     /protein_id="HCS1969839.1"
                     /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL
                     GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM
                     IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN
                     LRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW
                     VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ"
     gene            3774..5819
                     /gene="dcp"
                     /locus_tag="OQQ76_003483"
     CDS             3774..5819
                     /gene="dcp"
                     /locus_tag="OQQ76_003483"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707439.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HCS1969840.1"
                     /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA
                     AIALNPQTPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL
                     ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV
                     LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL
                     IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLL
                     DFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP
                     WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH
                     PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQ
                     KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW
                     ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE
                     NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD
                     GYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLYRQWRGKAPQIMPMLQHRGLNI"
     gene            complement(5864..6382)
                     /locus_tag="OQQ76_003484"
     CDS             complement(5864..6382)
                     /locus_tag="OQQ76_003484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HCS1969841.1"
                     /translation="MNINKDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGG
                     KLASALCAAEDTPKFYGAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAI
                     ERADADVSIAITGYGGLEGGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAV
                     RFALVQLLQLLL"
     gene            6658..7050
                     /gene="ydeI"
                     /locus_tag="OQQ76_003485"
     CDS             6658..7050
                     /gene="ydeI"
                     /locus_tag="OQQ76_003485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI family stress tolerance OB fold protein"
                     /protein_id="HCS1969842.1"
                     /translation="MKFQAIVLASFLVMPYVLADDQGGLKQDAAPPPPHAIEDGYRGT
                     DDAKKMTVDFAKNMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREV
                     QPDQMINISGSLDKKSAPAVVRVTHLQK"
BASE COUNT         1914 a         1709 c         1860 g         1952 t
ORIGIN      
        1 gccattatga tcatggcata ttcagtgatt ggtttaatct ctgcgctgaa aatgccagag
       61 gtgaaagacc gtgatttaag tgcgctggaa gacgctgcgg aagatcaaca gcgtgttgta
      121 agagctgcgc aaccttccag aagtctgtaa accctcaatc ccttctctta ccggagaggg
      181 gatttttatt catataacaa aacatatagc ttgccatatt taaatttaag gaattgttat
      241 gggaaataat ttgttatcag caaaagcgac actccctgtt tatgatcgta ataacctggc
      301 cccaagaatt gttcatttag gctttggtgc atttcaccgt gcgcatcagg gcgtgtatgc
      361 cgatattctt gctacagaac atttcagtga ctggggatat tatgaggtca acttaatcgg
      421 cggcgaacag caaattgccg atttacaaca gcaagataat ctttataccg ttgcggaaat
      481 gtcggccgat gcgtggacgg ctcgcgtcgt tggcgtcgtt aaaaaagcct tgcacgtaca
      541 gatggatggc ttagaaaccg tgttggctgc gatgtgtgaa ccgcaaatcg cgattgtctc
      601 tctgacaatc accgaaaaag ggtatttcca ctctccggcg accggacagt taatgctcga
      661 tcacccgatg gtcgctgccg acgtgcaaaa tccccaccag ccgaaaacag caacaggggt
      721 gattgttgag gcgctggccc gccgtaaagc ggcaggactt cccgcattta ccgtcatgtc
      781 atgtgacaac atgccagaaa acggtcatgt tatgcgtgac gttgtcactt catacgcgaa
      841 agctgttgat gtaaaactgg cacaatggat cgaagataac gtgactttcc catcaacaat
      901 ggtggaccgt attgtgcccg cagtgacaga ggatacgctg gcgaaaatcg aacaacttac
      961 cggtgtgcgc gatcctgcgg gcgttgcctg tgaacctttc cgccagtggg taatagaaga
     1021 taactttgtt gccggacgtc cagaatggga aaaagcggga gccgaactgg ttagtgatgt
     1081 gctgccttat gaagagatga agttgcgcat gctcaacggc agtcattcat tcctggcgta
     1141 tttgggttat cttgccggat atcagcacat taatgactgc atggaagatg aacattatcg
     1201 ttatgcggcg tatggcttga tgttgcagga acaagcgccg acgctgaaag tgcagggcgt
     1261 tgatttgcaa gattacgcta accgattaat tgaacgctat agcaatccgg cgttacgtca
     1321 tcgaacctgg cagattgcga tggatggtag ccagaaattg ccacagcgga tgttggattc
     1381 tgttcgctgg catctggcgc atgacagcaa gttcgatctg ctggcgctgg gcgtcgcggg
     1441 ttggatgcgt tatgtcggtg gtgttgatga acagggaaat ccgatagaaa tcagtgaccc
     1501 actgttacct gttattcaga aggctgtaca aagtagtgcc gaagggaaag cgcgcgtcca
     1561 gtcattgctg gcgattaagg caatctttgg tgatgatttg ccagacaata gcttgtttac
     1621 tgcaaaagtg acggaagcgt acttgtcttt attagcgcat ggcgcgaaag cgaccgtggc
     1681 gaaatattcc gtgaagtaaa aaaagcaatg ccgccatcgg cggcattcac acacttagtt
     1741 catgccgaga cgaatcaggt ccagaggtgc cagtttctct ttacaacctt caacaactac
     1801 ggtttttccg cggcggattt gctcagcggt cagaccttca gtatcaatcg acaggatctt
     1861 gccagtgtga ccggtgccgc taaccataac acggctgcca gtggtgattg cgttacggtt
     1921 acgatcgtag gtcgtcatag gtgttttctc ctttctgatt tacagtcgaa gcccacgtaa
     1981 cgggcgcaat ataaatactc ctgtcgagtg aaatattttt tgtttttgat caagctcaca
     2041 tcttttttga tgcatgcatg agccgtaagg cggggggaaa agcctctcat cccggatggg
     2101 atgagagtaa atgaattact cttcgctaaa ccagtcgctg ttttcctggc ggatctggcg
     2161 cacggattcg ctgatttcct gcaaatgttg cgtcattgca cgttctaccg catcgccatc
     2221 acgtttttgc agggcagaga aaatatcaag atgctggcgt aacagcattt ctggtggaga
     2281 aacatggtcg aaactcatat agtgcacgcg atcaacggtc gctttcaggt tctcaatggt
     2341 atcccacgcc agttgacagt cggcaatctg cgtcaggagt tgatggaagt tgtcatcaag
     2401 ttcaaaaaaa tcatccagtt gcttgcgctc aatggcaatg cgttgctggt gaagattttg
     2461 ttccagttgg tagcactggc tttcggtaat catgctcgcc gcccgacgcg ccaccgcgca
     2521 ctcaatggcc taacggataa aactgccgtt gcgcacctgg gccatggaaa ttttgttgac
     2581 gtagctgcca cgctgtggac gaatttgaat caggccgttt tccgccagtt taataaaggc
     2641 ttcacgaacc ggctggcgtg acacattgaa acgaacagaa acttcttttt ccgacaacgg
     2701 tgtgcctgga gcaatcaggc aatggacaat gtcgcgacga aggatacgat aaatttgctg
     2761 attgacaggc tgtgtgggat taagttgcgt ttcgacggtc attcgttctt gcttgtgagt
     2821 gagttaactg catgagtcta ccactttttt gtgacaagca ataacccggc agttacgccg
     2881 ggtataaaaa ttactgacgg tggacattca gtccggcata gctttgggta accggcatca
     2941 tttccagggt attgatattg acgtgagcag gcagcgttga cacccaccaa acggcttcgc
     3001 tgacatcttc tggcgtcaat gcaacggtat tttgataggt tttttccgct ttaccgtcat
     3061 cgcctttaaa gcggacattg gaaaactcgg tgccacccac cagacccggt tcgatgtcgg
     3121 tgacgcgcac cgccgtacca tgcaggtccg tacgcagatt caggctaaac tgacgaacaa
     3181 acgctttcgt cgcaccgtaa acgttaccac cggcataagg ccagctacct gccgttgagc
     3241 caatgttaat aatatgacca tgattacgtt caaccatacc cggtaagacg gcgcgcgtca
     3301 tatataccag gcctttgttg ttggtatcaa tcatcgtttc ccagtcttca acgctggctt
     3361 tatgcgcagg ctccatgccc aacgccaggc cggcattatt taccaggata tcaatattgc
     3421 accactcggc aggaagcgat gccagcatct cttcaatagc ggcgcggttg cgaacgtcca
     3481 gttgggcgat gtacagatta tctcccagtt cgtcttttaa ctcctgcaac cgttcctggc
     3541 gacggccagt ggcgataact ttatgccctt gttgaataaa acgacgagta atgcattcac
     3601 caaaacctgc cgttgctcca gttactaaaa cgatcatctc actgttcctc aacgcttttg
     3661 tgtgtcaata acatagcacg tgatgcttaa gagcgggtaa tactggtttg taagattgca
     3721 ctccgttatc agtaagccta cgctatggaa cacctcgcgt tcaggagaag aaaatgacaa
     3781 caatgaatcc tttccttgtg caaagcacac taccgtatct ggctccccat tttgatcaaa
     3841 ttgccaatca tcactatcgc ccggcattcg atgagggaat gcagcaaaag cgggcagaaa
     3901 ttgctgccat cgcgcttaac ccgcaaacgc ctgatttcaa caatactatt ctggcactgg
     3961 aacaaagcgg agaattactt acccgcgtta ccagcgtctt ttttgcgatg actgcggcgc
     4021 ataccaatga tgaattacag cgtcttgatg aacagttttc cgctgaactg gcggaactgg
     4081 ctaatgatat ctatctgaac ggtgaattat tcgcgcgggt agatgctgtc tggcagcgcc
     4141 gtgaatccct ggggcttgat agtgaatcca tccgcctggt ggaggtgatt catcaacgtt
     4201 ttgtccttgc cggagccaaa cttgcgcaag ctgataaagc aaaattaaaa gtactgaata
     4261 cagaagctgc gaccctgacc agccagttta accagcgatt actggcagca aataaatccg
     4321 gcggtctggt tgtgaacgat atcgcgcagc tggcaggaat gagtgagcaa gagattgcgc
     4381 tggcggcaga ggcggctcgc gagaaaggtc tggataacaa atggctgatt ccgctgctga
     4441 ataccaccca acaaccggcg cttgccgaga tgcgcgatcg tgcgacgcgt gaaaaactgt
     4501 ttattgcggg ctggacgcga gcggaaaaaa atgatgccaa tgatacccgc gctatcattc
     4561 aacgtctggt agagattcgc gcacagcagg cgaaactgct tgattttcct cattatgccg
     4621 catggaaaat cgccgatcag atggcaaaaa cgccagaagc agcactcaac tttatgcggg
     4681 aaattgttcc agcggcgcgt caacgtgcta gcgatgaatt agcctccata caggcggtta
     4741 tcgataagca gcaaggcggg tttagcgcgc agccgtggga ctgggcattt tatgccgaac
     4801 aggtacggcg ggagaaattt gatcttgatg aggcgcagct caagccatat tttgaattaa
     4861 acacggtgtt gaatgaaggt gtattctgga ccgcgaatca gctcttcggt attaagtttg
     4921 tcgaacgttt tgatattcct gtctaccatc ctgacgttcg tgtgtgggaa atttttgatc
     4981 ataatggcgt gggactggcg ttattttacg gtgatttctt cgcccgtgat tcaaaaagcg
     5041 gcggtgcatg gatgggcaat tttgttgagc aatcaacgct taatgaaacg catccggtaa
     5101 tttataacgt ttgcaattat cagaaacccg ctgccggtga gcctgcgttg ttactctggg
     5161 atgatgtcat aaccttattc catgaatttg gtcatacgct gcacggcctt tttgcccgcc
     5221 agcgttatgc cacgctttcc ggcaccaaca cgccgcgtga ttttgtcgaa tttccgtcgc
     5281 aaatcaacga acactgggca acgcatccgc aggtattcgc tcgctacgcc cggcattatc
     5341 agagcggggc agcaatgcct gacgaactgc aacagaaaat gcgtaatgcc agcctgttca
     5401 acaaagggta tgagatgagc gaactgctta gcgccgcact tctcgatatg cgctggcatt
     5461 gcctggaaga aaacgaagca atgcaggatg tcgatgattt tgaattgcgg gcgctggtgg
     5521 cggaaaatat ggatcttcct gctataccgc cacgctatcg cagcagttat ttcgcccata
     5581 tttttggtgg cggatatgct gcaggttatt acgcttatct gtggacgcaa atgttggccg
     5641 atgatggtta ccagtggttt gttgagcagg gcggattaac gcgtgaaaat gggcagcgtt
     5701 ttcgcgaggc gatcctttcc agaggtaaca gcgaagatct ggaacgcctg tatcgacaat
     5761 ggcgcggtaa ggctcctcag attatgccga tgctgcaaca tcgtggcttg aatatataaa
     5821 caccaccaat ggctggcctg gagatatcgc caggccagcc tggttatagc agtaattgca
     5881 gcagctggac gagggcaaac ctcaccgcta aagctaatac cgtttcgcag tcgccagcaa
     5941 aatgcataac cgcagtgtag gtctggcctt taatatgcca cgcgaaccag acggtacccg
     6001 ctggcgtacc atcttcaccg ccctccagtc cgccgtagcc ggtaatggca atactgacat
     6061 cagcatccgc acgctctatg gcacctgttg ccatttctgc tgccactttc tcactcaccg
     6121 cagaatatcg ttcaagagat tgctggctta cgctgaggat tttcatcttt gcctgatcgg
     6181 tgaaagtaac aaagcctgca ccgtaaaatt tgggtgtatc ttcagctgca cacagggcgc
     6241 tagccaactt accgccggtg catgattcgg cggtagttaa gcgtaattga tccgcgataa
     6301 gtctttgact caacgcggat gtcaggtttt caatagtgtc ggtatctgcg agttgtacaa
     6361 ttttatcttt attaatgttc actgtttttt gtccacgcta ttatatgtaa aggtgatttg
     6421 ctttttctgt atgctcgtcc aatataataa ttttcaaaca tataaatccg attattctga
     6481 aaatatgttt aagactcttc aatcttctta actttagtga gttaaattct ctgaatattt
     6541 gacagctagt gggctgattt taaatgcctt ataacaattg gcagtattct tatttggcaa
     6601 ttataaaaat agcaaccaga cttaataagt caaaccaaac gcaattaagg agttagtatg
     6661 aaatttcagg ccattgtatt agcaagtttt cttgtcatgc cttatgtgtt ggcagatgac
     6721 cagggcggtt taaaacagga tgcagcgcca ccgccgcctc atgcaataga agatggctat
     6781 cgcggaaccg atgatgcaaa aaaaatgacc gttgatttcg caaaaaacat gcacgatggc
     6841 gcttcggttt cactacgcgg taatttgatt tctcacaaag gagaggaccg ttacgttttt
     6901 cgcgataaga gcggtgaaat taatgtcgtt attcctgcgg ccgtctttga tggacgagaa
     6961 gttcagccgg accagatgat caacattagc ggtagtctgg ataagaaaag cgcgccggcc
     7021 gtcgttcggg tcactcattt gcagaaataa aaataaatta gcctgatggc ctgaactact
     7081 gggccattag ggtattgggt tatgctattt gtcatccttt tatttacgat aatgcagagg
     7141 tgatttacag aattaaacac ttttttatcc gctgattttg ttttaaatca caatgttatc
     7201 tcagagatga ctcataactt cggatttcta tgaaaatatt gacgtaattt tgcttttctc
     7261 tcgttagaat agcgcgcaca aggaactgtg aaaaaggagt ggcaatgatc aagaagacaa
     7321 cggaaattga tgccatcttg ttaaatctca ataaggctat cgatgcccac taccagtggc
     7381 tggtgagtat gtttcacagc gtggtcgcga gagatgccag taagccagaa ataac
//
LOCUS       DAJVUN010000191         7207 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.191, whole genome shotgun sequence.
ACCESSION   DAJVUN010000191 DAJVUN010000000
VERSION     DAJVUN010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.191"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..227)
                     /locus_tag="OQQ76_003486"
     CDS             complement(<1..227)
                     /locus_tag="OQQ76_003486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HCS1969843.1"
                     /translation="MKSVFTISASLAISLMLCCTAQANDHKLLGVIAMPRNETNDLAL
                     KLPVCRIVKRIQLSADHGDLQLSGASVYFKAA"
     gene            604..2520
                     /gene="dnaK"
                     /locus_tag="OQQ76_003487"
     CDS             604..2520
                     /gene="dnaK"
                     /locus_tag="OQQ76_003487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HCS1969844.1"
                     /translation="MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ
                     DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW
                     VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
                     LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
                     DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
                     DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
                     NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
                     EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
                     SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD
                     DVVDAEFEEVKDKK"
     gene            2609..3739
                     /gene="dnaJ"
                     /locus_tag="OQQ76_003488"
     CDS             2609..3739
                     /gene="dnaJ"
                     /locus_tag="OQQ76_003488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HCS1969845.1"
                     /translation="MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
                     AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF
                     GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT
                     CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA
                     GVDTGDRIRLAGEGEAGQHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL
                     GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN
                     EKQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR"
     gene            complement(3843..3995)
                     /gene="mokC"
                     /locus_tag="OQQ76_003489"
     CDS             complement(3843..3995)
                     /gene="mokC"
                     /locus_tag="OQQ76_003489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin MokC"
                     /protein_id="HCS1969846.1"
                     /translation="MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF
                     TAYESE"
     gene            4581..5747
                     /gene="nhaA"
                     /locus_tag="OQQ76_003490"
     CDS             4581..5747
                     /gene="nhaA"
                     /locus_tag="OQQ76_003490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HCS1969847.1"
                     /translation="MKHLHRFFSSDASGGIILIIAAILAMMMANSGATSGWYHDFLET
                     PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI
                     GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
                     IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTA
                     VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
                     QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMAVGIL
                     CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV"
     gene            5813..6712
                     /gene="nhaR"
                     /locus_tag="OQQ76_003491"
     CDS             5813..6712
                     /gene="nhaR"
                     /locus_tag="OQQ76_003491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705976.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HCS1969848.1"
                     /translation="MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEE
                     RLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADA
                     LSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL
                     FSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEI
                     LGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERM
                     IQHPAVQRICNTDYSALFSPAAR"
     gene            complement(6750..>7207)
                     /locus_tag="OQQ76_003492"
     CDS             complement(6750..>7207)
                     /locus_tag="OQQ76_003492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000871680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial family protein"
                     /protein_id="HCS1969849.1"
                     /translation="NLNTILLVNLMTCGFEDQSIDTGRFVLSRINNENYQFHHIRFDC
                     IQGEQGELVFEPSDVEYYFEPVTIQESGTSILKNELENSEDGAGQVGFQLSNDGTNEI
                     QYGKSNYYSFQHPHEGSNQIPLFIRPRTYGNNVSSGQIMSRVKIVVMYN"
BASE COUNT         1844 a         1683 c         1852 g         1828 t
ORIGIN      
        1 gcggctttga aataaaccga tgcaccgctt aactgtaaat cgccatggtc ggcagagagt
       61 tgtatgcgtt tcacaatgcg acaaacagga agtttcagcg ccagatcgtt ggtttcgtta
      121 cgcggcattg caatgacgcc gaggagttta tggtcgtttg cctgcgccgt gcagcacagc
      181 atcaggctaa tcgccaggct ggcggaaatc gtaaaaacgg attttataag gattctctta
      241 gtgggaagag gtagagggat gaatacccac tagtttactg ctgataaaga gaagattcag
      301 gtacgtaatc ttttcttttt attacaattt tttgatgaat gccttggctg cgattcattc
      361 tttatatgaa taaaattgct gtcaatttta cgtcttgtcc tgccatatcg cgaaatttct
      421 gcgcaaaagc acaaaaaatt tttgcatctc ccccttgatg acgtgggtta cgaccccatt
      481 tagtagtcaa ccgcagtgag tgagtctgca aaaaaatgaa attgggcagt tgaaaccaga
      541 catttcgccc ctattacaga ctcacaacca catgatgacc gaatatatag tggagacgtt
      601 tagatgggta aaataattgg tatcgacctg ggtactacca actcttgtgt agcgattatg
      661 gatggcacca ctcctcgcgt gctggagaac gccgaaggcg atcgcaccac gccttctatt
      721 attgcctata cccaggatgg tgaaactctg gttggtcagc cggctaaacg tcaggcagtg
      781 acgaacccgc aaaacaccct gtttgcgatt aaacgcctga ttggccgccg cttccaggac
      841 gaagaagtac agcgtgatgt ttccatcatg ccgttcaaaa ttattgctgc tgataacggc
      901 gacgcatggg tcgaagttaa aggccagaaa atggcaccgc cgcagatttc tgctgaagtg
      961 ctgaaaaaaa tgaagaaaac cgctgaagat tacttgggtg aaccggtaac tgaagctgtt
     1021 atcaccgtac cggcatactt taacgatgct cagcgtcagg caaccaaaga cgcaggccgt
     1081 atcgctggtc tggaagtaaa acgtatcatc aacgaaccga ccgcagctgc gctggcttac
     1141 ggtctggaca aaggtactgg caaccgtact atcgcggttt atgacctggg tggtggtact
     1201 ttcgatattt ctattatcga aatcgacgaa gttgatggcg aaaaaacctt cgaagttctg
     1261 gctaccaacg gtgataccca cctgggtggt gaagacttcg acagccgtct gatcaactac
     1321 ctggttgaag aattcaagaa agatcagggc attgacctgc gcaacgatcc gctggcaatg
     1381 cagcgcctga aagaagcggc agaaaaagcg aaaatcgaac tgtcttccgc tcagcagacc
     1441 gacgttaacc tgccgtacat cactgcagat gcgaccggtc cgaaacacat gaacatcaaa
     1501 gtgactcgtg cgaaactgga aagcctggtt gaagatctgg taaaccgttc cattgagccg
     1561 ctgaaagttg cactgcagga cgctggcctg tccgtatctg atatcgacga cgttatcctc
     1621 gttggtggtc agactcgtat gccaatggtt cagaagaaag ttgctgagtt ctttggtaaa
     1681 gagccgcgta aagacgttaa cccggacgaa gctgtagcaa tcggtgctgc tgttcagggt
     1741 ggtgttctga ctggtgacgt gaaagacgta ctgctgctgg acgttacccc gctgtctctg
     1801 ggtatcgaaa ccatgggcgg tgtgatgacg acgctgatcg cgaaaaacac cactatcccg
     1861 accaagcaca gccaggtgtt ctctaccgct gaagacaacc agtctgcggt aaccatccat
     1921 gtgctgcagg gtgaacgtaa acgtgcggct gataacaaat ctctgggtca gttcaacctg
     1981 gatggtatca acccggcacc gcgcggcatg ccgcagatcg aagttacctt cgatatcgat
     2041 gctgacggta tcctgcacgt ttccgcgaaa gataaaaaca gcggtaaaga gcagaagatc
     2101 accatcaagg cttcttctgg tctgaacgaa gatgaaatcc agaaaatggt acgcgacgca
     2161 gaagctaacg ccgaagctga ccgtaagttt gaagagctgg tacagactcg caaccagggc
     2221 gaccatctgc tgcacagcac ccgtaagcag gttgaagaag caggcgacaa actgccggct
     2281 gacgacaaaa ctgctatcga gtctgcactg actgcactgg aaactgctct gaaaggtgaa
     2341 gacaaagccg ctatcgaagc gaaaatgcag gagctggcac aggtttccca gaaactgatg
     2401 gaaatcgccc agcagcaaca tgcccagcag cagactgccg gtgctgatgc ttctgcaaac
     2461 aacgcgaaag atgacgatgt tgtcgacgct gaatttgaag aagtcaaaga caaaaaataa
     2521 tcgccctata aacgggtaat tatactgaca cgggcgaagg ggaatttcct ctccgcccgt
     2581 gcattcatct aggggcaatt taaaaaagat ggctaagcaa gattattacg agattttagg
     2641 cgtttccaaa acagcggaag agcgtgaaat caaaaaggcc tacaaacgcc tggccatgaa
     2701 ataccacccg gaccgtaacc agggtgacaa agaggccgag gcgaaattta aagagatcaa
     2761 ggaagcttat gaagttctga ccgactcgca aaaacgtgcg gcatacgatc agtatggtca
     2821 tgctgcgttt gagcaaggcg gcatgggcgg cggcggtttt ggcggcggcg cagacttcag
     2881 cgatattttt ggtgacgttt tcggcgatat ttttggcggc ggacgtggtc gtcaacgtgc
     2941 ggcgcgcggt gctgatttac gctataacat ggagctcacc ctcgaagaag ctgtacgtgg
     3001 cgtgaccaaa gagatccgca ttccgactct ggaagagtgt gacgtttgcc acggtagcgg
     3061 tgcaaaacca ggtacacagc cgcagacctg tccgacctgt catggttctg gtcaggtgca
     3121 gatgcgtcag ggtttctttg ccgtgcagca gacctgtcca cactgtcagg gccgcggtac
     3181 gctgatcaaa gatccgtgca acaaatgtca tggtcatggt cgtgttgagc gcagcaaaac
     3241 gctgtccgtt aaaatcccgg caggggtgga cactggagac cgcatccgtc ttgcgggcga
     3301 aggtgaagcg ggccagcatg gcgcaccggc aggcgatctg tacgttcagg ttcaggttaa
     3361 acagcacccg attttcgagc gtgaaggcaa caacctgtat tgcgaagtcc cgatcaactt
     3421 cgctatggcg gcgctgggtg gcgaaatcga agtaccgacc cttgatggtc gcgtcaaact
     3481 gaaagtgcct ggcgaaaccc agaccggtaa gcttttccgt atgcgcggta aaggcgtcaa
     3541 gtctgtccgc ggtggcgcac agggtgattt gctgtgccgc gttgtcgtcg aaacaccggt
     3601 aggcctgaac gagaagcaga aacagctgct gcaagagctg caagaaagct tcggtggccc
     3661 aaccggcgag cacaacagcc cgcgctcaaa gagcttcttt gatggtgtga agaagttttt
     3721 tgacgacctg acccgctaac ctccccaaaa gcctgcccgt gggcaggcct aggtaaaaat
     3781 agggtgcgtt gaagatatgc gagcacctgt aaagtggcgg ggatcactcc ccgccgttgc
     3841 tcttactcgg attcgtaagc cgtgaaaaca gcaacctccg tctggccagt tcggatgtga
     3901 acctcacaga ggtcttttct cgttaccagc gccgccacaa cggcggtgat acagatgacg
     3961 atcagggcga caatcatcgc cttatgctgc ttcattgctc tcttctcctt gaccttacgg
     4021 tcagtaagag gcactctaca tgtgttcagc atataggggg cctcgggttg atggtaaaat
     4081 atcactcggg gcttttctct atctgccgtt cagctaatgc ctgagacaga cagcctcaag
     4141 cacccgccgc tattatatcg ctctctttaa cccattttgt tttatcgatt ctaatcctga
     4201 agacgcctcg catttttgtg gcgtaatttt ttaatgattt aattatttaa ctttaattta
     4261 tctctttatc gcaattattg acgacaagct ggattatttt tgaaatattg tcctaacaaa
     4321 taacgccgac tgacaagaaa ttaattatta cttttcctaa ttaatccctc agaaatcctc
     4381 accttaagct atgattatct gagcttaggg tcactcgtca gcgcttacag ccgtcaaaaa
     4441 ctcatctcac cgctgatggc gcaaattcta caaaggctcg taaaaaacga attattccta
     4501 cactataatc tgattttaac gatgattcgt gcggggtaaa atagtaaaaa cgatctattc
     4561 acctgaaaga gaaataaaaa gtgaaacatc tgcatcgatt ctttagcagt gatgcctcgg
     4621 gaggcattat tcttatcatt gccgctatcc tggcgatgat gatggccaac agcggcgcaa
     4681 ccagtggatg gtatcacgac tttctggaga cgccggttca gctccgggtt ggttcactcg
     4741 aaatcaacaa aaacatgctg ttatggataa atgacgcgct gatggcggta tttttcctgt
     4801 tagtcggtct ggaagttaaa cgtgaactga tgcaaggatc gctagccagc ttacgccagg
     4861 ccgcatttcc agttatcgcc gctattggtg ggatgattgt gccggcatta ctctatctgg
     4921 cctttaacta tgccgatccg attacccgcg aagggtgggc gatcccggcg gctactgaca
     4981 ttgcctttgc acttggtgtg ctggcgctgt tgggaagtcg tgttccgtta gcactgaaga
     5041 tctttttgat ggctctggct attatcgacg atcttggggc catcattatc atcgcattgt
     5101 tctacactaa tgacttatcg atggcctctc ttggcgtcgc ggctgtagca attgcggtac
     5161 tcgcggtatt gaatctgtgt ggtgtacgcc gcacgggcgt ctatattctg gttggcgtag
     5221 tgttgtggac tgcggtgttg aaatcggggg ttcacgcaac cttggcgggg gtaattgtcg
     5281 gcttctttat tcctttgaaa gagaagcatg ggcgttctcc agcgaagcga ctggagcatg
     5341 tgttacaccc gtgggtggcg tatctgattt tgccgctgtt tgcatttgct aatgctggcg
     5401 tttcactgca aggcgtcacg ctggatggct tgacctccat tctgccattg gggatcatcg
     5461 ctggcttgct gattggcaaa ccgctgggga ttagtctgtt ctgctggttg gcgctgcgtt
     5521 tgaaactggc acatctgcct gagggaacga cttatcagca aattatggcg gtggggatcc
     5581 tgtgcggtat cggttttact atgtctatct ttattgccag cttggccttt ggtagcgtag
     5641 atccagaact gattaactgg gcgaaactcg gtatcctggt cggttctatc tcttcggcgg
     5701 taattggata cagctggtta cgcgttcgtt tgcgtccatc agtgtgacag gacggtttac
     5761 cggggagcca taaacggctc ccttttcatt gttatcaggg agagaaatga gcatgtctca
     5821 tatcaattac aaccacttgt attacttctg gcatgtctat aaagaaggtt ccgtggttgg
     5881 cgcagcggag gcgctttatt taactccaca aaccattacc ggacagatcc gggctctgga
     5941 agagcgcctg caaggcaaat tatttaagcg caagggacgt ggtctcgaac ccagcgagct
     6001 gggagaactg gtctatcgct atgccgataa aatgttcacc ttaagccagg aaatgctgga
     6061 tattgtgaac tatcgcaaag aatccaattt attgtttgac gttggcgtgg ctgatgcact
     6121 ttccaaacgc ctggtcagta gcgtgctgaa tgctgcagtg gtagaaggcg agccgattca
     6181 tcttcgctgc ttcgaatcca cccacgaaat gctactggag caattaagcc agcataaact
     6241 ggatatgatc atttccgact gtccgataga ctctacgcag caggaaggcc tgttctccgt
     6301 gagaattggc gaatgtggcg tgagtttctg gtgtacaaat ccaccaccag aaaaaccgtt
     6361 cccggcttgt ctggaagaac ggcgactttt gattcctggg cgacgttcaa tgttagggcg
     6421 caaattgctt aactggttta actcccaggg attaaacgta gaaatcctcg gcgagtttga
     6481 tgatgccgcg ttgatgaaag cttttggtgc aatgcacaat gcaatcttcg ttgccccaac
     6541 gctttatgca tatgactttt atgccgataa aactgtcgta gaaattggtc gcgtcgagaa
     6601 tgtgatggaa gagtaccatg ctatttttgc tgagcggatg attcagcacc cggcggtaca
     6661 gcgaatctgc aatacggatt attctgcgct ttttagtcca gcggcgcgtt aatcggcagc
     6721 tcccccaaag ttaaagtgga ggagatagat tagttgtaca taaccacgat tttgactcgg
     6781 ctcattattt gcccgcttga gacattattt ccatatgtac gcgggcgaat aaatagagga
     6841 atctgattac ttccttcatg gggatgctga aaagagtagt aattgctttt accatactgg
     6901 atttcattcg taccatcatt ggagagttga aagcctactt gacccgcacc gtcctcactg
     6961 ttttctaact cattttttaa tatgctggtt cctgactcct gtatcgtcac tggttcaaag
     7021 taatattcaa catcactggg ttcaaaaact aattcacctt gctcgccctg gatgcagtca
     7081 aatcttatat gatgaaactg ataattttca ttattgatac gagacagtac aaatcgtcca
     7141 gtgtcgatgg attgatcttc aaaaccacag gtcattaaat ttaccagtaa aatagtattt
     7201 aaattat
//
LOCUS       DAJVUN010000192         7194 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.192, whole genome shotgun sequence.
ACCESSION   DAJVUN010000192 DAJVUN010000000
VERSION     DAJVUN010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7194
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.192"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(931..2193)
                     /locus_tag="OQQ76_003493"
     CDS             complement(931..2193)
                     /locus_tag="OQQ76_003493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HCS1969850.1"
                     /translation="MFLNDSKIRKLKPSSRPVKLSDAHSLYLLVNPGGSRIWYLKYRF
                     NGKESRVSLGAYPLVSLAEARQQRDGIRKLLAQNINPAQQRMAEKSACSPEKCFKAVA
                     LAWHKTNKKWSADYAARILASMENHIFPAVGHLPVAALKTQDFTALLRVIENKGFLEV
                     ASRTRQQLSNIMRYAVQQGLTDSNPAQHLEGVTASPVKNHYPALPLERLPELLDRIGD
                     YRQGRELTRLAVVLTLHLFIRSSELRFARWSEIDFRHKIWTIPATREAIDKVRFSGRG
                     AKMRTPHIVPLSRQAIAILKQIQELSGHLDLVFPGDHNPYKPMSENTTNRALRLMGYD
                     TKTEICGHGLRAMACSALVESDLWSRDTVERQMSHQERNSVRAAYVHKAEHLEARKAM
                     MQWWSDYLDVCREGYVAPYIYARQHEAA"
     gene            complement(2355..2430)
                     /locus_tag="OQQ76_003494"
     tRNA            complement(2355..2430)
                     /locus_tag="OQQ76_003494"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2395..2397),aa:Asn,seq:gtt)
     gene            2435..4078
                     /gene="yeeO"
                     /locus_tag="OQQ76_003495"
                     /pseudo
     CDS             2435..4078
                     /gene="yeeO"
                     /locus_tag="OQQ76_003495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416491.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="toxic metabolite efflux MATE transporter YeeO"
     gene            4179..4254
                     /locus_tag="OQQ76_003496"
     tRNA            4179..4254
                     /locus_tag="OQQ76_003496"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4212..4214,aa:Asn,seq:gtt)
     gene            complement(4710..5426)
                     /locus_tag="OQQ76_003497"
     CDS             complement(4710..5426)
                     /locus_tag="OQQ76_003497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1969851.1"
                     /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN
                     TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN
                     VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGSDPDHIFEILLEAEVDVRD
                     VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL
                     VDALEDDDDVQKVYHNVANL"
     gene            complement(5769..>7194)
                     /gene="amn"
                     /locus_tag="OQQ76_003498"
     CDS             complement(5769..>7194)
                     /gene="amn"
                     /locus_tag="OQQ76_003498"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HCS1969852.1"
                     /translation="AQALDKLDALYEQSVVALRNAIGNYITSGELPDENARKQGLFIY
                     PSLTVTWDGSTTNPPKTRAFGRFTHAGSYTTTITRPTLFRSYLNEQLTLLYQDYGAHI
                     SVQPSQHEIPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETADGIYHPTEFSP
                     LSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPDSPY
                     IALSCAGGNWITAETEAPEEAISDLAWKKHQMPAWHLITADGQGITLVNIGIGPSNAK
                     TICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPIPSI
                     AEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAI
                     DMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAI
                     DLLRAEGDRLHSRKLRTFNEPPFR"
BASE COUNT         1824 a         1571 c         1751 g         2048 t
ORIGIN      
        1 tgctacatat agattaacaa tcttcggtgc ttcatgttat tttttgcact ctgtgaccgt
       61 tatcctgtgg tgaaaataca atctggtgca gactgtcatg gtacatttcc gaataaactg
      121 gttgcgccag aaagggaaag ggtcataaag gttaaggggg cgataagggt aacagcgcct
      181 ggcctgaaag ggccgaaaac caaagggcca ggaactggcg cagtcctgaa caggtagagc
      241 ggcgggacgc tggcgcagat aaccgattta caggggctgg tgcagattat tttgtctctg
      301 tatagctggt gcagtgataa tgtgtatcag gaaagattgc ccggtatttt attgcgcact
      361 tttttggaag tattaagtgg taattccgtg gaaatatcga taattgatag cttttcacct
      421 tccgtgatta acatgttaat cacggaaggt ggctgcctgt tgaaaacaga tgcattgata
      481 ggtttctcct gaaattattg gaagcaaaat aatttcaggc ttatatctgt ctggtctctg
      541 aatatctgat gcagttctta caggtcccag agtatagggt caggagatat tctggagtat
      601 taattggcat ttccgtgaaa atatcacgta ttgatagctt ttcatcttct gtgatttgcg
      661 ggcaaatcac agaaggtagt tatctatcaa taatgtattt attaataggc aatcgcctga
      721 aaatattcta ctggaataat ttctggtact tacctatcga taagtagttc attgattggt
      781 tttcacccaa aattatttgg ggccaaatat ttatagatgt tttccgattg ataataacaa
      841 aaaaacggca atatctatca acaaaaaaaa gcagatcccg gtcaatcagg atctgctttt
      901 ccagttttaa tgatttacgc tatttctgat tcaggctgcc tcatgctgcc gcgcataaat
      961 gtacggcgcg acatacccct cgcggcacac atccagataa tccgaccacc actgcatcat
     1021 ggcctttcgg gcctccagat gctccgcctt atgcacatat gccgcacgca cgctgttgcg
     1081 ctcctggtgg ctcatttgcc gctccactgt atcgcgtgac cacagatccg actccaccag
     1141 ggcgctacag gccattgccc tgagtccatg cccgcagatt tcagttttcg tatcataccc
     1201 catcagacgc agcgcccggt tggtggtgtt ttcgctcatt ggcttgtacg gattatggtc
     1261 gccgggaaac accagatcca gatggccgga aagctcctgt atctgtttca gaatggcaat
     1321 cgcctggcgg gagagcggta cgatatgcgg ggtgcgcatt tttgcgccac gccccgaaaa
     1381 ccgtacttta tcaatggcct cgcgggttgc ggggatggtc cagattttgt gcctgaaatc
     1441 aatctcactc cagcgggcga aacgcagttc gctggaacgg atgaacaggt gcaacgtcag
     1501 caccaccgcc agccgggtta actcccggcc ctgccggtag tcgccaatgc ggtcaagcag
     1561 ttcaggcaat cgctccagcg gtaaagcggg atagtgattc ttgacggggg aggcagttac
     1621 accttccaga tgctgcgccg gattactgtc ggtaagtccc tgctgaacgg catagcgcat
     1681 gatgttgctg agttgctgcc gggttcggga cgcgacttcc agaaagcctt tattctcgat
     1741 aacccgcaac aaagccgtga aatcctgcgt tttaagcgca gcaacgggca ggtgaccaac
     1801 cgccgggaag atatggtttt ccatactggc gagaatacgg gcggcataat cagccgacca
     1861 ttttttgttg gttttgtgcc aggccagcgc caccgcctta aaacactttt caggggagca
     1921 ggcggatttc tctgccatgc gctgttgcgc cgggttgata ttctgcgcca gtagcttgcg
     1981 gataccgtcg cgctgttgcc tggcttctgc cagtgagacc agcgggtatg cgccaagact
     2041 gactctggat tcttttccgt tgaaacgata tttgagatac cagatgcgtg aaccgcccgg
     2101 attgacgagc agatacagac tgtgagcgtc ggagagtttt accggacggg aagaaggttt
     2161 taacttgcgg attttagaat cgtttaaaaa catttggggg tcactccaga atcgaaccaa
     2221 actgacccca gatctgacca ccaaattatc ccgatgcgga gagaaaacca gatacgcacc
     2281 gggaaggatt ttcacgccaa cttactgaat cgtaaacaaa tagagacgta cagataagca
     2341 tgaaaacttg aatttggctc ctctgactgg actcgaacca gtgacatacg gattaacagt
     2401 ccgccgttct accgactgaa ctacagagga atcgctgttg aggcacatct taacggcgaa
     2461 aaatcttttg tcaaacccga tttttaaatt ccccaactgt ttgccgtttc tatcaacagt
     2521 ttgttgcatt tgcagacaat ttgttggcga aaatctttgc agctttgctg attctccctc
     2581 attatttgaa atgtggtttc actttctgca attaaggtcg gctttgaata tctcctctgc
     2641 tttacgccag gttgttcacg gcactcgctg gcacgctaaa cgcaagagct acaaagtgtt
     2701 gttctggcgc gagataaccc cacttgctgt tcctatcttc atggagaatg cctgtgtcct
     2761 gttgatgggg gttctgagca cttttctggt cagctggctg ggaaaagatg cgatggccgg
     2821 cgtgggattg gcggacagct tcaatatggt cattatggct ttttttgctg ctatcgatct
     2881 tggtactact gtcgttgtgg catttagtct cggtaagcgg gatcgacgac gagcgagggt
     2941 ggcgacgcgg cagtcattgg tgatcatgac gttgtttgcc gtactgttgg caacgcttat
     3001 tcatcatttt ggcgaacaaa ttattgattt cgtcgcgggt gatgccacga cagaagttaa
     3061 agcactggcg ttgacttatc tggagctgac ggtactcagt tatccagcag ctgccatcac
     3121 tcttattggt agcggggcac ttcgtggtgc agggaatacg aaaataccgc tattgattaa
     3181 cggtagcctg aatattctta atattattat tagcggcata ttgatttacg gccttttctc
     3241 ttggccggga ctgggatttg tcggggcagg gctgggttta accatttctc gttatattgg
     3301 cgcagttgca attttgtggg tgctggcgat tggttttaat cctgcgctaa ggatttcgtt
     3361 aaagagctat tttaaaccgc tgaattttag cattatctgg gaagtcatgg ggattggtat
     3421 tcccgcgagt gtcgaatcag tgttatttac cagtggtcgg ttattaaccc aaatgttcgt
     3481 tgccgggatg gggaccagtg ttattgccgg aaattttatc gcgttttcaa ttgcggctct
     3541 tatcaactta cccggaagtg cgctcggctc tgcttctacg atcattacag gccgaaggtt
     3601 gggggtaggg cagatagcgc aagcagagat tcagttgcgg catgtgttct ggctttccac
     3661 tcttggatta acggccatcg cctggctaac ggctcccttt gccggggtta tggcatcgtt
     3721 ttacacctag gatccacagg ttaaacatgt cgttgtgatt ctgatttggc taaatgcttt
     3781 atttatgcct atttggtccg cctcatgggt gctacccgct ggatttaaag gtgctcgtga
     3841 tgcccgttac gccatgtggg tttcgatgtt gagcatgtgg ggttgtcggg ttgtagtcgg
     3901 ttatgtgctg ggaatcatgc ttggctgggg tgtggttggt gtctgaatgg gaatgtttgc
     3961 cgactgggct gtgcgggccg tgctgtttta ctggcgaatg gttactggac gttggctatg
     4021 gaaataccct cgacccgagc cgcaaaagtg tgaaaaaaag ccagttgtgt cggaataaac
     4081 gacaaaatgc agattatttc agcaaacgat ttcaaattta aaaaacaggc tttgacattg
     4141 tgggtgggca tcgctaatat tcgcctcgtt ctcacgattc ctctgtagtt cagtcggtag
     4201 aacggcggac tgttaatccg tatgtcactg gttcgagtcc agtcagagga gccaaatttt
     4261 agttttgaga catctctatg agtctcaaaa cagttaaaaa ataaaaatta tttttacccg
     4321 gttaccttgt aaaaaagtga ccgttttttt gatttctgtg tttcgtgcgc ttaatcgagt
     4381 ctcacgcttt agtgagcaag ttgccccccc cccaacagac atcacgattc gcaaggtcaa
     4441 aaactctgtt ccatgaagta ccgtacaaag ataaagagaa aaatgcctta tgcgggatgt
     4501 cgctatcgcg tctttatcgg gaaactatgc gtaattgcca ctttgccttc tgtaatcaga
     4561 aaaagaagaa ctggaatttt aataaatatt atttctctgg gaacggggat tttttataat
     4621 caatatgacg agttgaacat tatatttttt ataagggtta tatgagatta aagaaatctg
     4681 ccgtaaagac agatttcttt aaaatataat tagagatttg cgacgttatg ataaactttt
     4741 tgtacatcgt cgtcatcttc aagggcatca acaagccctt caaagatttc taaatcttct
     4801 ggggaaagct caacttcaga ttgcgcaatc atttctaatt ctgttgttga gaactcagtg
     4861 attccagctg cttttagagc cgcgattcct ttatgaaggt cagtaggttc ggtataaata
     4921 acaatgttac cttcttcttc agtcacatca cgaacatcaa cttcagcttc aagtaaaatt
     4981 tcaaaaatat ggtcagggtc tgatccttta aatacaatca cacccgtatt gtcaaacata
     5041 tagctgacag aacctgccgc tccgatattg ccgccttttt tattgaaaat tgtgcgaacg
     5101 ttagcaatcg tacggttaac atttgaagtc aatgtctcgg cgataatcat tgagccatta
     5161 ggaccaaagc cttcataacg gccctgcacg aacgtttcat ctccgccgcc tttggcttta
     5221 tcaattgctt tatcaataac gtgctttgga acttgtgcct gctttgcacg ttcaataacg
     5281 aattttaaag atgtgtttaa ttctggatcg ggttcacctt gtttagcagc agcatagatt
     5341 tctacaccga attttgcata aattttagac gttgcaccgt ctttagccgt ttttttagca
     5401 acaatattgg cccatttacg tcccactgga atgatctcct cgaaaattta tttacattac
     5461 tggtaaatcg ttaacatgtg ttaaatcagc atattatatc ataacaggaa aaatctcgtc
     5521 tattagaaat aaaaatattc taaagccata atcttatatt ttgttttata aaaactaatg
     5581 ttgttggcgg gattttttat aattatattt tgaaagcata catgctttta atatgcggaa
     5641 atcattaaga cgataatgaa actcgcatct gcccaaggaa gcaaacagcc cgcgttgatt
     5701 gcaggctatt tgccagatgt cttacttaat ccttcacatc tatttctgat gagaaggttc
     5761 agaacttatt atcggaacgg cggctcatta aaggttcgta atttacgtga atgcagtcgg
     5821 tcgccttctg cgcgcagcaa atcgatcgcc cgaatgccaa tttgtaggtg ttcggaaata
     5881 gcgccttcat aaaaacggtt agcctgaccg ggaagtttaa tctcgccatg caacggttta
     5941 tctgaaacac acagtagtgt cccgtatggc acgcggaaac gatatccttg cgcggcaatg
     6001 gttgcacttt ccatatcaat tgctacggcc cggcttaagt taaaacgaag tgcagaagct
     6061 gagtaacgta attcccagtt cctgtcatct gtggttacca cagtaccagt acgtagccgc
     6121 tgtttgactt cctcaccggg cctgccactc accagcttgg tggcgtcata aagcgcacgt
     6181 tgcacttcag caatgctcgg aataggaata tcgggcggca gaaccgcatc aagaacgtgg
     6241 tcatcgcgta aataagcgtg tgcaagtaca taatcgccaa tggcctgact ttcacgtaac
     6301 ccgccacagt gaccaatcat caaccagaca tccgggcgta gcactgccag atgatcgcag
     6361 atggttttag catttgacgg tcctatgcca atattcacca gagtaatacc ctgaccatcg
     6421 gcggtaatta aatgccatgc tggcatctga tgttttttcc atgcaaggtc ggaaatggct
     6481 tcttctggcg cttcggtttc ggcggtgatc cagttcccgc cagcacaaga aagggcaatg
     6541 tagggactat caggatcgag gatctggctg catccccaac gaacgaattc atccacataa
     6601 cgtgtgtagt tggtaaacaa gacgaacggc tgaaaatgtt caactggcgt accggtataa
     6661 tggcgcaacc gtgcgaggga aaaatcgacg cggcgcgcat caaaatgcga tagcggggag
     6721 aattcagttg gatgataaat gccgtctgca gtttcatcgc caatttgcgc cagttctgtt
     6781 gtcggaaagt agcgagttaa cccagcgctc attgagcgat caagtgtcaa ttcagagcca
     6841 tcgatgacat aaggataagg gatttcatgc tgcgagggtt gcactgagat atgcgcacca
     6901 taatcctgat acagcaacgt aagttgttca ttaagatacg aacgaaagag agtagggcga
     6961 gtaatcgtgg tggtgtagct gcctgcgtgg gtaaagcgac caaatgcgcg cgttttgggg
     7021 ggattggttg tgctaccgtc ccaggttacg gtcagtgatg gatagataaa aagaccttgt
     7081 ttgcgggcgt tttcatcagg taattcgcca cttgtaatat agttgccaat ggcgttgcgt
     7141 aatgcgacta cagattgctc atacagcgcg tcgagtttat ccagtgcctg agct
//
LOCUS       DAJVUN010000193         7050 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.193, whole genome shotgun sequence.
ACCESSION   DAJVUN010000193 DAJVUN010000000
VERSION     DAJVUN010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7050)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7050)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7050
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.193"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..1324)
                     /gene="astB"
                     /locus_tag="OQQ76_003499"
     CDS             complement(<1..1324)
                     /gene="astB"
                     /locus_tag="OQQ76_003499"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HCS1969853.1"
                     /translation="MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQ
                     GLLKMKTLADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSS
                     ASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFS
                     VHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREAS
                     EAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLAN
                     LRARVNGFMAIEVPATQVSVSDAVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGY
                     LNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFN
                     ALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQR"
     gene            complement(1321..2799)
                     /gene="astD"
                     /locus_tag="OQQ76_003500"
     CDS             complement(1321..2799)
                     /gene="astD"
                     /locus_tag="OQQ76_003500"
                     /EC_number="1.2.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
                     /protein_id="HCS1969854.1"
                     /translation="MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACR
                     AARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKPRWEAATEVTAMI
                     NKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPSHLPNGHIVPALL
                     AGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLF
                     TGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQR
                     CTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAW
                     QQLEAMGGRTLLAPRLLQSETSLLTPGIIEMTGVAGVPDEEVFGPLLRVWRYDSFEEA
                     ILMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGN
                     HRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR"
     gene            complement(2796..3830)
                     /gene="astA"
                     /locus_tag="OQQ76_003501"
     CDS             complement(2796..3830)
                     /gene="astA"
                     /locus_tag="OQQ76_003501"
                     /EC_number="2.3.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HCS1969855.1"
                     /translation="MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAI
                     KTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWHNYRVGTLVHASKELN
                     VYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV
                     AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS
                     QEAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVE
                     VAEGQPAQGDFPACLVANENYHHFRVVLARTDPATERLILTAAQLDALKCHAGERVRL
                     VRLCAVEKTA"
     gene            complement(3827..5047)
                     /gene="astC"
                     /locus_tag="OQQ76_003502"
     CDS             complement(3827..5047)
                     /gene="astC"
                     /locus_tag="OQQ76_003502"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylornithine/acetylornithine transaminase"
                     /protein_id="HCS1969856.1"
                     /translation="MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDF
                     AGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFC
                     NSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAP
                     LPPDIRHAAYNDINSASALIDDATCAVIVEPIQGEGGVVPASNAFLQGLRELCDRHNA
                     LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGDFPVGALLTTEECASVMTVG
                     THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRG
                     LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR
                     FAAACEHFVSRGSS"
     gene            5493..6299
                     /gene="xthA"
                     /locus_tag="OQQ76_003503"
     CDS             5493..6299
                     /gene="xthA"
                     /locus_tag="OQQ76_003503"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HCS1969857.1"
                     /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL
                     EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN
                     VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
                     IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK
                     GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR"
     gene            6466..7041
                     /locus_tag="OQQ76_003504"
                     /pseudo
     CDS             6466..7041
                     /locus_tag="OQQ76_003504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310483.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
BASE COUNT         1655 a         2016 c         1772 g         1607 t
ORIGIN      
        1 cgcgctggaa cggataaacc gaaccgagat tcagtaattg gctcaataca tccagtgctt
       61 cccgcccttc gcgcagcaat tgcgggtcgg ccagatcggc agcagtaaga cgatcgcggt
      121 agtaacgatc cacccagtca ttgagcgcat taaacaaggt atcgttcatc atcaccgccg
      181 gattcaccgc ccggcgttct tcttctgtca ataccacccg caaccgcagg cacgccgggc
      241 cgccgccatt cgccatgctt tcacgtaagt caaagacttt tagttcgcta atcgggttgt
      301 cagcggcaag gagttcattg agataacccc atactccggc gtgttcccga cactcctgag
      361 gcagcaccaa catcatggaa ccatcatcgc ggctcaacag ttggctgtta aacagatagg
      421 tagacaccgc atccgacacg gaaacctgag ttgccggaac ttctatcgcc ataaaaccgt
      481 tcacccgcgc ccgcaggttt gccagtaact gtgactggcg agcgaacgcc tgttggtggc
      541 aaaacagcac ctggcggtta cttacggcaa tcacgtcatt atgaaaaaca ccctggtcga
      601 taacgtccgg gttttgctgg gcgaaaatca cctgttgggg attcacctga ttaagccttg
      661 ccaccgcctc gctggcttcg cgagtctgtc gcgccggata acgggaaggc cgggtatcat
      721 tgccttcttc tcgcccgtag acaaaaagtt gcatacccgg ctcaccgtaa tgaccgccga
      781 gacgattgtg gtttgccgcc ccctcatcac cgagcaacgc tacctgcggc aacgccgaat
      841 ggacgctaaa tttctcttcg tcgttaaaaa tagcttttaa cagcgattca gtgacgggcg
      901 cttccagcga acggtgaaat ttattgttca ggttggcaac ggtgagatgc actttgccat
      961 ccagcgtatc ggcagatggc gcgatcgttg ccgcattggc tacccacatt ggcgaagcgg
     1021 agctgacgct ggaaagccag tgcggtgcct ggcgtgcaac tttttccagt acctgctcat
     1081 cgctaccact gaatcccaac tgacgcagca ccggaataaa cggacgctcg tgcggcggga
     1141 tcacggcctg ggggaatccc gcatcggcaa gggttttcat tttcagtaag ccctgtttcg
     1201 ccgccagtcg cgggttagac acctgaaaac ggtgacgggt agaggcttca ttaccaaacg
     1261 acaggccagc gtaatgatgc gtcagcccta ccagcccgtc gaaattaact tcccaggcgt
     1321 tcatcgcacc acctcatcgg aaaaatccag cccggggtta agcgttgcgg gcaaagttaa
     1381 cgagtccgac tccaggctcg ccataggcca tgcgcagtaa tctgcggcat accaggcgct
     1441 ggggcgatgg ttaccggatg caccaatgcc gccgaatggc gcggtactgg cagcaccagt
     1501 aagcggtttg ttccagttaa caatccccgc ccgcgcctcc agcaacagtt gatcgaattt
     1561 ttcccgctcg ggggaaacca gaccgcaaga gagtccgaag cgagtgttat tcgccattag
     1621 aatcgcttcc tcgaaagaat cataacgcca gacgcgcaat aacggtccga acacctcttc
     1681 atctggtacg ccagcaacgc ctgtcatttc aatgatcccc ggcgtcagca acgatgtctc
     1741 tgattgtaat aagcgcggcg caagcagggt tcgtccgccc atcgcttcca gttgctgcca
     1801 ggcagtaacc acctgctgtg cggcctgttc agaaatcagc ccgccaataa acggctgcgg
     1861 ttcgtcatcc cagttgcccg gcgttaatcg ctggctgacg gcaaccagac gagcaagaaa
     1921 cgcatcgccc tgcgctccgc ttttgagcaa taaacggcgg gcgcaggtgc agcgttgccc
     1981 ggctgtgaca aacgccgact gaatggtcag atggacagcc gcgtcgatat ccgccacctc
     2041 atcgataatt agcggattat taccgcccat ctcaagggcg agaattttct ccggctgacc
     2101 ggagagctgg cgatgcagct ggtagccggt attggcgcga ccggtaaaca gcaaaccgtc
     2161 gagatcctcc agcgcactca gcgcctgacc cgtttcacgc ccgccctgca ccaggttcag
     2221 cacgcccggc ggcaagccag cctgctgcca taaacgcatt accgcttcgc cactccacgg
     2281 tgtcagttcg ctgggtttaa agataatggt gttacctgcc agcaatgccg gaacgatatg
     2341 tccgttcggc aaatgactag ggaaattata cggcccaaac accgccagca cgccgtgcgg
     2401 gcgatgtcgc aggctcgccg caccgtccgg catttcacta cgctgctcgc cggtacgaac
     2461 gtgatacgcc ttaattgata tcgcgatttt attgatcatc gccgtcactt cggttgccgc
     2521 ttcccagcgc ggcttacccg tttctctggc aataatcgcg gttaattcgg ctttattgct
     2581 ttccagcaat ccggcaaagc gttcgacaac gacctgacgt tcagccaatg agagccgcgc
     2641 ccagcgcgga aacgccgcac gggctgcccg acaagcctgt tcgacctgag cggcatcggc
     2701 atcattgcct tgccataaca cctcgcccga taccggatta cgcttcacac gcgatgcgcc
     2761 ctggcccgtt atccagtcac cgttaatcca taaagtcatg ctgttttctc cactgcgcac
     2821 aggcgcacca gacgaacgcg ctcccctgcg tggcatttga gggcatccag ttgtgcggcg
     2881 gttaaaatca aacgctcggt tgccggatcg gtacgcgcca gcaccacgcg gaaatggtga
     2941 taattttcat tggcgaccag gcaggccgga aaatcgccct gcgcaggctg cccttctgcc
     3001 acttccacca gccgactttt acggatggcg cgcacgcggt cgatgtcaca ctcaagcgtt
     3061 ggcccgccgt cgaagatgtc gatatagttg cggtaacgaa aaccttcttt ctccagcacc
     3121 gcgcgggcag gcgcggtttg cggatgtacc tgaccgatga cgtcctgggc ttcctgggat
     3181 aaaaagtggg tatagatcgg atgtttcggc atcagttctg caataaatgc cttttgcccg
     3241 gtgccgcaga gaaaatcggc gcggctaaaa tccatcgaaa agaagcgttt accgaggctt
     3301 tgccagaacg gtgaatagcc gtgttcgtca atcaccccgc gcatttcagc aaccactttg
     3361 tcattaaact tgtcgcgaaa agccgccata aacataaagc gcgatttcga cagcaaatag
     3421 ccgttgccct ctttgcgcca gtccgggtcg agaaacagcg tgcacagctc gctgctgccg
     3481 gtgtgatcgt tactaagaaa cagcgtcggc aatgcgttat agacattcag ctcttttgag
     3541 gcgtgaacca acgtgccgac ccgatagttg tgccagggat cgttcagccc aaccgccacc
     3601 tcaatggcgc aaatccccgc cacggtgcct gtctcgctat cttccagcac gaacacatag
     3661 ccctgctcgc ttttgggcag ttcgccttgc caggttttga ttgccctttc gatacgcgcg
     3721 gaaagcgtgg cttcattagc gggaagcgac gtcaggccgc cgcccgtttt gctggcaagc
     3781 tgcatcagcg ccgagacatc tgagcgctca acgggacgga tgaccatcat gatgaacctc
     3841 ggctaacaaa gtgttcgcaa gcagctgcaa agcgatccag tccggtcgtc acctcttctt
     3901 cgctgacatt gagcgcaggc gcaaaacgca ccacgttgcc acccgcaatc agtaccataa
     3961 cgcctgcttt cgccgcctcc tgagagatct gtttcgcttg tccggcgtaa tcggcattca
     4021 gtacacagcc aatcaacaaa cctaagccgc gaacttcact gaacaaaccg tagcggtgat
     4081 taatggtatt aagacgctca acaaaccagt cgtgacgctg tttaacgcca ttaagcatct
     4141 ctggtgtgtt gatgagctcc agcactttgc ccgccaccgc cgaggccagc ggattgccgc
     4201 cataggtggt gccatgagtg ccaacggtca tcacgctggc gcactcttcg gttgttaaca
     4261 acgcaccgac cgggaaatcg ccgcccagcg ctttggcggt agttaacaga tcaggtgtca
     4321 cgccgtagtg catataggca tacagttccc cggtgcgccc gacgccggtt tgtacttcat
     4381 caaaaatcaa cagcgcattg tggcggtcac acaattcacg cagaccttgt aaaaacgcgt
     4441 tgctggctgg caccacaccg ccttccccct ggatgggttc gacaatcacc gcacaggtgg
     4501 cgtcgtcaat cagcgcgctg gcagagttaa tatcgttata tgcagcatga cggatatctg
     4561 gtggcagtgg cgcaaaatcc tgtgaatagg ctggctgccc acccgcactg acagtaaaca
     4621 gcgtgcgacc atgaaacgca tttttaaacg ccatgatacc gctcttatgg ctgccgtagc
     4681 ggtcgtgagc gaatttacgc gccagtttta gcgccgcttc gttggcttcc gcaccggagt
     4741 tacaaaagaa gacgcgatcg gcaaacgtgg cgtcgatcaa ttttttcgcc agtcgcagta
     4801 ccggctcgtt ggtgtaaccg ttgccggtat gccagaactt actcgcctgt tcgttcagcg
     4861 cttcacgcag ttccggatgc gcatggccca gcgcgttcac cgcaatgcca cccgcgaagt
     4921 cgatatactc tttcccctgc tgatcccaca agcgcgaacc ttcgccacgt accggtataa
     4981 agggtgccgg agcgtaaaca ggtatcatcc attcatcaaa gttttcacgc gtaattggct
     5041 gagacatagc gacctctaca gtaaataatt cgttatttat atgttgacaa taagtaatgt
     5101 ttgcgctgta aatgtagatt gcagggttcg tgccagccag tgataaaagt gcataaacgg
     5161 cggaggctaa ctggaaatca aggagttata accaaaccat atgcatttaa agtgcatata
     5221 aagtgaatac gtttgcgatg tgggtgaata aaaagaataa aaaacgcaat gttatgcaga
     5281 agtaaaatat aattctggaa ttgtgatcat tgacgaaatt tactggaaat tactgcgcca
     5341 ttctgacgca gcgcgcacca aaagcgggca ttttttgcgc catcgttgac atcattaaca
     5401 accatcgatc aaatcactta acaacaggcg gtaagcaacg cgaaattctg ctaccatcca
     5461 cgcactcttt atctgaataa atggcagcga ctatgaaatt tgtctctttt aatatcaacg
     5521 gcctgcgcgc cagacctcac cagcttgaag ccatcgtcga aaagcaccaa ccggatgtga
     5581 ttggcctgca ggagacaaaa gttcatgacg atatgtttcc gctcgaagag gtggcgaagc
     5641 tcggctacaa cgtgttttat cacgggcaga aaggccatta tggcgtggcg ctgctgacca
     5701 aagagacgcc gattgccgtg cgtcgcggct ttcccggtga cgacgaagag gcgcagcggc
     5761 ggattattat ggcggaaatc ccctcactgc tgggtaatgt caccgtgatc aacggttact
     5821 tcccgcaggg tgaaagccgc gaccatccga taaaattccc ggcaaaagcg cagttttatc
     5881 agaatctgca aaactacctg gaaaccgaac tcaaacgtga taatccggta ctgattatgg
     5941 gcgatatgaa tatcagccct acagatctgg atatcggcat tggcgaagaa aaccgtaagc
     6001 gctggctgcg taccggtaaa tgctctttcc tgccggaaga gcgcgaatgg atggacaggc
     6061 tgatgagctg ggggttggtc gataccttcc gccatgctaa tccgcaaaca gcagatcgtt
     6121 tctcatggtt tgattaccgc tcaaaaggtt ttgacgataa ccgtggtctg cgcatcgacc
     6181 tgctgctcgc cagccaaccg ctggcagaat gttgcgtaga aaccggcatc gactatgaaa
     6241 ttcgcagcat ggaaaaaccg tccgatcacg cccccgtctg ggcgaccttc cgccgctaat
     6301 ttagcagctc tcctggctca aactgggtca ggagaattaa ccttgagaaa aatcaacaaa
     6361 ctgtcagtaa tgatttgttg cctgccgtcc tttgttatac cgtcactgcg tttttagttg
     6421 tctgaccact tctctattat caagtttgat ataggaaact ccacgatgaa tgctgagcgt
     6481 aaatttcttt tcgcctgtct tatttttgcg ctggtcattt acgctatcca cgctttcggt
     6541 ttattcgatc tgctcaccga tttaccccac ttacagacac tcattcgcca gagcggattg
     6601 ttcggttata gcctctatat tctgttattc atcattgcca ccctctttct gttaccagga
     6661 agcatactgg tgatcgctgg aggaatagtt tttggcccgc tcttagggac actactctca
     6721 ttaattgccg ccacgctggc ctcctcgtgc tcattcctgc tggcgcggtg gctgggacgt
     6781 gatttactgc tgaaatacgt gggccatagc cataccttcc aggccattga aaaaggcatt
     6841 gcgcgtaacg gtattgattt tcttattctg acccgcttaa tcccgttgtt tccttacaat
     6901 attcaaaatt acgcttacgg attaaccacc atcgccttct ggccttatac ccttatttcg
     6961 gcactcacga ccctgcccgg tattgttatt tataccgtga tggcaagcga tctcgccaat
     7021 gaaggcatta cgctgcgctg gtaatgctgc
//
LOCUS       DAJVUN010000194         6973 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.194, whole genome shotgun sequence.
ACCESSION   DAJVUN010000194 DAJVUN010000000
VERSION     DAJVUN010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6973
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.194"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            631..1809
                     /gene="ltrA"
                     /locus_tag="OQQ76_003505"
     CDS             631..1809
                     /gene="ltrA"
                     /locus_tag="OQQ76_003505"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005017045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HCS1969858.1"
                     /translation="MCVATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPV
                     LEKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDPIFHADSYGYRPGKSAHDAL
                     KQCAIRCWRYSWILEVDISAFFDHVKHDLVLKALEHHGMPKWVILYCRRWMEAPMQSC
                     ENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRM
                     SDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNF
                     KGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNAIVRGWIEYYGKF
                     WSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
                     "
     gene            1892..2071
                     /locus_tag="OQQ76_003506"
                     /pseudo
     CDS             1892..2071
                     /locus_tag="OQQ76_003506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(2101..2583)
                     /locus_tag="OQQ76_003507"
                     /pseudo
     CDS             complement(2101..2583)
                     /locus_tag="OQQ76_003507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016154415.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(2839..3819)
                     /locus_tag="OQQ76_003508"
     CDS             complement(2839..3819)
                     /locus_tag="OQQ76_003508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HCS1969859.1"
                     /translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
                     IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
                     DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
                     GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
                     GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
                     LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
     gene            complement(3819..5018)
                     /locus_tag="OQQ76_003509"
     CDS             complement(3819..5018)
                     /locus_tag="OQQ76_003509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCS1969860.1"
                     /translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
                     AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
                     DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
                     LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
                     LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
                     AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
                     GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
                     EFIRANY"
     gene            complement(5340..5677)
                     /locus_tag="OQQ76_003510"
                     /pseudo
     CDS             complement(5340..5677)
                     /locus_tag="OQQ76_003510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(5744..6526)
                     /gene="istB"
                     /locus_tag="OQQ76_003511"
     CDS             complement(5744..6526)
                     /gene="istB"
                     /locus_tag="OQQ76_003511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element IS100kyp family helper ATPase
                     IstB"
                     /protein_id="HCS1969861.1"
                     /translation="MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFL
                     EHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSLIER
                     NENIVLLGPSGVGKTHLAIAMGYEAVRAGIQVRFTTAADLLLQLSTAQRQGRYKTTLQ
                     RGVMAPRLLIIDEIGYLPFSQKEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGD
                     AALTSAMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
     gene            complement(6523..>6973)
                     /locus_tag="OQQ76_003512"
     CDS             complement(6523..>6973)
                     /locus_tag="OQQ76_003512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1969862.1"
                     /translation="LQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVER
                     MVQYTRNSFYIPLMTRLRPMGSTVDVETANRHGLRWLHDVANQRKHETIQARPCDRWL
                     EEQQSMLALPPEKKEYDVHPGENLVSFDNPPQHHPLSIYDSFCRGVA"
BASE COUNT         1833 a         1627 c         1697 g         1816 t
ORIGIN      
        1 accgatgata tccccgttcc ggtccaggag ccgggcagcg gtaaaacaag gactgcccgg
       61 ctgtgggtct acgttcgtga tgaccgtaac gccggttcgg aaattgcagc ataagttatc
      121 catgctctga ggtgggtgga ggtgggccct ccggtcaggg tttacaggag cactgaccaa
      181 acgacccggt gctgcttcat tctaaggaat gaggtggtga gcgactcggg aaaaggcaga
      241 gatctactgt cacgtggggt tcgggaagct gaacgaaagt aaactgtccg atgaaacatc
      301 gaaatcttag atgatgtcaa aatggggccg tacagccgtc ccctgataag cgcagaagac
      361 acctgcttac tgactgcgcg gcatccggtg tgaaggcagc aggatcccgg gccagaccat
      421 ctcagggaac gtgagaacct gtttccggca cgtatcggga aacaggggcg gccccattcg
      481 tagtagtgat gaaagatctg taatgggtct ggagcgaagg gatggggatc acattcattg
      541 cagaagacac aacccaaaag gggatgacgt aactgatgca acgaaaatca tttgaaatac
      601 caaaagcact ggtctgggca tcatatctgg atgtgcgtcg caacaaggga gccccccgga
      661 tgcgacgggc agactttgaa aatgttcgac cagcaacgtg atggcaatct atacaagatc
      721 tggaaccggc tatgttcggg aacatggttt ccgccaccag tgctggaaaa acggatcccg
      781 aagtcgaatg gcaaggaacg cattctgggg atcccaacag tatccgatcg aattgctcag
      841 ggagcgataa aacttttcat ggaagaaaag cttgacccga ttttccatgc tgattcatat
      901 ggttaccgac caggcaaatc agctcatgac gctctgaaac aatgtgccat ccggtgctgg
      961 cgttatagct ggatactgga agtggacatc agtgcgtttt tcgaccatgt gaaacatgat
     1021 ctggtgctca aagctctgga acaccacggg atgcctaaat gggtcatcct gtactgtcga
     1081 cgctggatgg aagcgccaat gcagagttgt gaaaatggag aattaataac ccgaacacga
     1141 ggcactccgc agggcggggt cattagtccg ctacttgcta acttgttcct tcactatgca
     1201 tttgatttgt ggatggaaag agaatatcgg ggggtaccgt ttgagaggta cgctgacgat
     1261 attgtagtac attgttcacg aatgagtgat gcaacaaggc taaagaacag gttatcggag
     1321 cgcttctcgg aagtcgggct ggtcctgaat gcagggaaaa cgaatatcgc ctacattgac
     1381 acgtttaaaa ggagaaacgt cgcaacgagt ttcacctttc tcggatatga cttcaaagtg
     1441 cgtacgctga agaatttcaa aggcgaacgg taccgaaaat gcatgccggg tgcgtcaaat
     1501 gcagcaatgc gcaaaataac agaaacaatc aagaagtggc gtatacatcg ctcaacagct
     1561 gagagtttgc tggattttgc gaggcgctac aatgcgatag tgagaggctg gatcgagtac
     1621 tacggaaagt tctggtccag aaatttcaac tatcgactgt ggagtgcaat gcagtcacgt
     1681 ctgctcaagt ggatgcagtc taaatacaga ctttcgaacc ggaaggctca gcgaaagctg
     1741 acgctggtaa ggaaggagta tccgaagcta tttgttcact ggtatttact acgtgcatca
     1801 aatgagtgat caagagccgt atgacgcgag agtgtcacgt acggttccgt gagcagccgg
     1861 ggagtgaaat tctctccggc tgactcgact cgcgggttcc gacagcgatg acgaacatgc
     1921 ggcggtgttg tactcgctga tcggcacatg ccgtctgaac aatgtggaac cagaaaaatg
     1981 gctgcgttac gtcattgagc atatccagga ctggccggca aaccgggtac gtgatctgtt
     2041 gccctggaaa gttgatctga gctctcagta aatatcaata cggttctgac gagccgctta
     2101 cttttggcgt aattctgctg cgcctttact gaacacaatg ccgtattcag caagaagtcc
     2161 acgaatgtga tttatcagtt gtgtcctttc cattgaaacc aaccgacgca tattcaaaaa
     2221 agtctggacg tcctgttgct ccagagtttt tattggtacg ggtcgtatag ttccatgttg
     2281 gcaggcctca gctattgcct gtgcgtcgtt ataatcattt ttctggcacc gctgataagc
     2341 tttaacatgt tgtgccggaa gcaatattac atcatggtcg agtttcctga tttcccgggc
     2401 ccagtaatga gatgccccgc cagcctccat cgcaacagtc attttaggct gttgcaccag
     2461 ccagttaagc agttgattgc gagaaagttt ggtctttcct gcgggtttgc catgagcatt
     2521 gatactgaaa agataaaagt tcgttttagc cagatcaatg ccggtgattt tctgttcaga
     2581 catggtattc cgcttacttt tgtggttaaa gtttatccat catggcgcaa ttgaaggctg
     2641 ccgtgaaaga gggggaagac tatctcatcg gttactgtta aacggctaag agaaactatc
     2701 tttttcaagc aaagaagata cggtgaaaca ggcgatttca ccgtgaaata ctgttcaaaa
     2761 aaaacgctaa taaaagcaaa atttctttta aaacagccaa ttaaaaactg gtgagttgct
     2821 ggcgaaaaac ttgaattttc acagcgaatt cagattatct tttagtacaa gagcaatcat
     2881 acgatctaac ttatcctgaa cttccaacgg taatctgccg aattcatatg agaacgtacg
     2941 tccctttact cgttttcgag caaatttatc tttactatca aatttccata acaaagttac
     3001 aaccgcttta tcctttactc ctgaatcaag caatgaagac atttccttgg ttataagccg
     3061 cataatactg tttttaacct cgtcttcaga aagattgtca tcagcagtaa taagctcaat
     3121 actcggcgag atattcttca caacttcatc aatagatata tcacccagcc tcagtcgttc
     3181 acttaattca gccagttgcc tgtaatcggc gtatgtcagc tcagactgaa caggaaaaag
     3241 agacacaaaa tctttaggta cggacgctgc ttggagggca cgagtcacct tagctgccga
     3301 caatccctct ctttccgcaa tttgcttctg gttcataccg gcctctttga gacgtactaa
     3361 acgcaaccca atttcacgaa tattatgttc aagtgacgtc tgcaaatctt tcgccagatg
     3421 ctgagcttca gaaacagtaa gctcatcatc cgttacaagt acacgtaatc caaccttgca
     3481 tagcaaagct gctgcccgac gacgggaacc atccaaaatc tcaataagat cgccagtccg
     3541 aatcccaata catggataga attgttgtaa acgtatagtt ctggtgatgt cttttagtga
     3601 gtccggcgtc agggctgtct gttcgcggcc attcacctct tcaaccacaa aagtttgagt
     3661 gtccactttg tcatgatcaa ccttgatctc agtaaatttt gcctttcggc cagtattgag
     3721 ggtaaataca tgaactggag ccgatatttc ttcagtatta ttcaggatat ttgtattcag
     3781 cgtacggcca atagtcggtc ggtgctttct gttttccatc agtagttggc ccttataaat
     3841 tcaatacgat caaaaactgc tttagcgaaa tcttctgctg ccatacgtgc atttttcaaa
     3901 gcttcaccac tgccaacata agtaacagga ttcgcagata tcacggtatc aaacgactcg
     3961 ccgcttctct caaaaccatc aagacgtggc attgaaacat caagcatgtc accaccgaaa
     4021 atctcttttg tcaggctatg gcagtattta tgatctgact tattcgccag tttcgacatg
     4081 aagccaatat ttgcctgcaa acggcatgaa catccatcct gttcaataat ctgtacaagt
     4141 tcaggtaaac gagccaaata tttaagcgtg gaatggaaat caacttgtgc tggcggcacc
     4201 ggtgtaaaca tgatatctgc ggcagcaatg gcatttttca aaaatgcgtc cagatgcggg
     4261 cctgtatcaa taaggatgaa gtcgaaatca tgcttcagct tatcaataat attctcacgc
     4321 aatatcgcgt gtttgttttg tcctaataga tgctcctcgc acagagtatc ccagtttgat
     4381 gcaataaagg cgtcgtcaat agaagccggc ataacataaa cgccagggat aactgacgga
     4441 acgataaaat cttccagtaa ttcctcacga ctcacgttct gcaacatagc ctgcggtgcg
     4501 gttgtatcaa ccagccccac cgcatgcaag tagttcagaa acatagtggc tgatgactgg
     4561 ggatctaaat caaggagcag aatacgtaaa tcttctgaca gcaggtgagg atgagcacgc
     4621 agggcgtgag ctacggaaac actactcacg gttttagaca caccgccttt tagactaccg
     4681 atgaatatgg aatatgcctc actataacga tcgcgatatt taggaatgcc acgatgtgca
     4741 tagatatcga taatgttctg gatggttaat gcatattttg tcgcggttcc tgctgggcgt
     4801 ttttcaaact gatagccctg agcctccatc tcaccgactg caccatccac gcttgcgcgc
     4861 gttaattttg gaagcttagc tacagcagac tttgaataga cttgataaaa aacatcagcc
     4921 tgaaactcct gcttttgctc ctgaatctgt tttgttaggg cgagcaacat tttatctgca
     4981 cgctgcgcaa ccttacttaa ctgctcaaaa ctagtcattc cccctccgtg ctatgtagga
     5041 ttttaactta ttacaaaaaa aactgcatta gcagggtaat gcatgcaagt gcatattgta
     5101 catgcttata ttaaaaatgc gcgcattgct gatttattaa tcatcggaat gaatattact
     5161 gtaagatagt atgcctttcc gggagaaaga cgctgatttc ccccgaataa tccagttcac
     5221 caccacactc cggacaacag ctttcttcag gctccagatg gtgtatttcg cgggaaacat
     5281 gttccggtaa cggacggcga tgacgtgact gtcgcaacag gcgggggtag tgcttccaat
     5341 cagtagaaca tgtgcttttc aatgaaggag ccgatgactt tttcgtggat ttccacggaa
     5401 cgcgagaagc agattgtttt acgtgccagc cgcttgatgc gggtgcggag ggtccggttg
     5461 ttacgttcaa tacgttgcgt gaagattttg ccggtcaggt gtttctcctt cggcacttct
     5521 ctggcgtagc tgccccagtc atcgcggtca ccatgccgat acagaacgga gtcaacaggg
     5581 ctaacagttc ccgacaggtc tcatcattcc gtggcccgaa agtgtaagcc aacacaccgc
     5641 cagttttagt gttgtacgca taccagagcc agtgttgtgt caacgacgga tgaaaagtga
     5701 tccacttata tctccaccaa cggcccaata ttgatccacc gttttactca ggattagctt
     5761 ctgctataac cccggccttt cgtttctgtc tgagtcgata gctttctcct ttgatttgaa
     5821 cgacatgtga gtggtgtaag atacggccca gcatcgctga ggtcagtgct gcatcaccgg
     5881 cgaacgtttg atcccactgc ccgaacggta gattggatgt caggatcatt gcgctctttt
     5941 cataacgttt agcgatgacc tggaagaaca gttttgcttc tttctgactg aacggcagat
     6001 agcctatttc atcaatgatg agcaggcggg gggccattac tccacgctga agcgtcgttt
     6061 tataacggcc ctgacgttgt gccgtagata actgaagtaa cagatctgct gctgttgtga
     6121 agcgaacttg gatacctgca cggactgctt catagcccat cgctattgcc agatgggttt
     6181 tccccacacc tgatggcccc agtaatacga tattttcatt acgttctatg aggctgagtg
     6241 agcgtaacga ctggagttgc ttctgcggtg ctccggtggc gaatgtgaag tcatactctt
     6301 cgaacgtttt caccgccggg aaggctgcca ttcgggtata catcgcctgt ttacgttgat
     6361 gacgtgccag tttttcttca tgaagcagat gctccaggaa gtccatataa ctccattcct
     6421 ggtctactgc ctgttgtgac agcgcaggcg ctgcgcttat aaggctttcc agttgcaact
     6481 gcccggcgag cgccatcagt cgttgatgtt gcagttccat catcacgcca ctcctctgca
     6541 gaatgagtcg tagatggaga gtggatgatg ctgggggggg ttgtcgaagc tcaccagatt
     6601 ttcaccagga tgcacgtcat actctttttt ctccggaggc agtgccagca tggactgctg
     6661 ctcttcgagc cagcgatcac agggacgggc ctggattgtt tcatgctttc gttggttagc
     6721 gacatcgtgc agccagcgca gaccgtggcg gttggctgtt tcaacatcga cagtgctccc
     6781 catcgggcgc aggcgagtca ttagtgggat gtaaaaactg ttacgggtgt actgcaccat
     6841 ccgttccacc ttacctttag tctgtgccct gaaggggcga cacagtcggg gagagaagcc
     6901 catctccttg ccgaactgcc acagcgaagg atggaaccgg tgctgaccgg tctgatatgc
     6961 gtcacgttgc aga
//
LOCUS       DAJVUN010000195         6939 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.195, whole genome shotgun sequence.
ACCESSION   DAJVUN010000195 DAJVUN010000000
VERSION     DAJVUN010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6939
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.195"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(68..515)
                     /locus_tag="OQQ76_003513"
                     /pseudo
     CDS             complement(68..515)
                     /locus_tag="OQQ76_003513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312957.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            672..1601
                     /gene="metA"
                     /locus_tag="OQQ76_003514"
     CDS             672..1601
                     /gene="metA"
                     /locus_tag="OQQ76_003514"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HCS1969863.1"
                     /translation="MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM
                     PKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQEQNFDG
                     LIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTR
                     TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD
                     AYLFASKDKRIAFVTGHPEYDAQTLAQEYFRDVEAGLDPEVPYNYFPHNDPQNTPRAS
                     WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD"
     gene            1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ76_003515"
     CDS             1870..3471
                     /gene="aceB"
                     /locus_tag="OQQ76_003515"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HCS1969864.1"
                     /translation="MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQR
                     NKLLAARIQQQQDIDNGTLPDFISETASICDADWKIRGIPADLEDRRVEITGPVERKM
                     VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNP
                     AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQS
                     WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR
                     WDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFI
                     PSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNDILGSRKNQLEV
                     MREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAAT
                     AEISRTSIWQWIHHQKMLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFDDAA
                     RLMEQITTSDELIDFLTLPGYCLLA"
     gene            3501..4805
                     /gene="aceA"
                     /locus_tag="OQQ76_003516"
     CDS             3501..4805
                     /gene="aceA"
                     /locus_tag="OQQ76_003516"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HCS1969865.1"
                     /translation="MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECT
                     LAQLGAARMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLA
                     ASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEA
                     GFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARL
                     AADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRG
                     LAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIA
                     SFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKD
                     GYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF"
     gene            4988..6724
                     /gene="aceK"
                     /locus_tag="OQQ76_003517"
     CDS             4988..6724
                     /gene="aceK"
                     /locus_tag="OQQ76_003517"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HCS1969866.1"
                     /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ
                     LAMKNRIHLYDHHVGLVVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESF
                     FNSVYCRLFDHRSLTPERLFIFSSQPERSFRTIPRPLAKDFHPDHGWESLLMRVISDL
                     PLRLRWQNKSRDIHYIIRHLTETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSG
                     TLPFLLPIHQTDDGELFIDTCLTTTAEASIVFGFARSYFMVYAPLPAALVEWLREILP
                     GKTTAELYMAIGCQKHAKTESYREYLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRV
                     FKVIKDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLEKRHISPALMEL
                     LLQEAAEKITDLGEQIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAA
                     ANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELASEPWYSV
                     SPGDVFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQNRIREGHVEDVYAYRRR
                     QRFSVRYGEMLF"
     gene            complement(6693..>6939)
                     /locus_tag="OQQ76_003518"
     CDS             complement(6693..>6939)
                     /locus_tag="OQQ76_003518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969867.1"
                     /translation="HARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILN
                     TLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR"
BASE COUNT         1693 a         1797 c         1785 g         1664 t
ORIGIN      
        1 gtgaaaaaaa tgccgggtgc gacgctggcg cgtcttctcc agcctgggca ggcacggcag
       61 gggcggctta ttcccccaca tacgccagat tcagcaacgg atacggtttc cccaaatcgt
      121 ccacctcaga gcgtcccgta accttaaaac ccaccttctt atagaaccca accgcctgct
      181 cattttgctc attaacgttg gttgtcagtt ccggtgccat cgagagcgca tgctccacca
      241 gcatccgacc cacgccgcag ccgcacacat caggatcgat aaacagcgca tccatatgct
      301 gcccacttaa caacataaac ccaaccggct gatcccgttc attaaccgcg acccacaacg
      361 gcgcttccgg caggaaggaa cgaactagct agcacctcca gctcggcccg atactctgct
      421 gataaaaaat cgtgtgtggc atcgacagat cgacaccaaa tcgcaacgag ttcctcccct
      481 tcctcatgcc gtgagcggcg aatactaata accattttct ctccttttag tcattcttat
      541 attctaacgt agtcttttcc ttgaaacttt ctcaccttca acatgcaggc tcgacattgg
      601 caaattttct ggttatcttc agctatctgg atgtctaaac gtataagtgt atgtagtgag
      661 gtaatcaggt tatgccgatt cgtgtgccgg acgagctacc cgccgtcaat ttcttgcgtg
      721 aagaaaacgt ctttgtgatg acaacttctc gtgcgtctgg tcaggaaatt cgtccactta
      781 aggttctgat ccttaacctg atgccgaaga agattgaaac tgaaaatcag tttctgcgcc
      841 tgctttcaaa ctcacctttg caggtcgata ttcagctgtt gcgcatcgat tcccgtgaat
      901 cgcgcaacac gcccgcagag catctgaaca acttctactg taactttgaa gatattcagg
      961 aacagaactt tgacggtctg attgtaaccg gtgcgccgct gggcctggtg gagtttaatg
     1021 atgtcgctta ctggccgcag atcaaacagg tgctggagtg gtcgaaagat cacgtcacct
     1081 cgacgctgtt tgtctgctgg gcggtacagg ccgcgctcaa tatcctctac ggcattccta
     1141 agcaaactcg caccgacaaa ctctctggcg tttacgagca tcatattctc catcctcatg
     1201 cgcttctgac gcgtggcttt gatgattcat tcctggcacc acattcgcgc tatgctgact
     1261 ttccggcagc gttgattcgt gattacaccg atctggaaat tctggcagag acggaagaag
     1321 gggatgcata tctgtttgcc agcaaagata agcgcattgc ctttgtgacg ggccatcccg
     1381 aatatgatgc gcaaacgctg gcgcaggaat atttccgcga tgtggaagcc ggactagacc
     1441 cggaagtacc gtataactat ttcccgcaca atgatccgca aaatacaccg cgagcgagct
     1501 ggcgtagtca cggtaatttg ctgtttacca actggctcaa ctattacgtc tatcagatca
     1561 cgccatacga tctacggcac atgaatccaa cgctggatta atcttctgtg atagtcgagc
     1621 gttaagcgat tcagcacctt acctcaggca ccttcgggtg ccttttttat ttccgaaacg
     1681 cacctcagga ggtgaataaa ttttattcac attgttatca ataagttatc aaatattttt
     1741 aattaaaatg gaaattgttt ttgattttgc attttaaatg agtggtctta gttgtgctga
     1801 acgaaaagcg cacaacgatc cttcgttcac agtggggaag ttttcggatc catgacgagg
     1861 agctgcacga tgactgaaca ggcaacaaca accgatgaac tggctttcac aaggccgtat
     1921 ggcgagcagg agaagcaaat tcttactgcc gaagcggtag aatttctgac tgagctggtg
     1981 acgcatttta cgccacaacg aaataaactt ctggcagcgc gcattcagca gcagcaagat
     2041 attgataacg gaacgttgcc tgattttatt tcggaaacag cttccatttg cgatgctgat
     2101 tggaaaattc gcgggattcc tgcggactta gaagaccgcc gcgtagagat aactggcccg
     2161 gtagagcgca agatggtgat caacgcgctc aacgccaatg tgaaagtctt tatggccgat
     2221 ttcgaagatt cactggcccc ggactggaac aaagtgatcg acgggcaaat taacctgcgt
     2281 gatgcagtta acggtaccat cagctatacc aatgaagcag gcaaaattta ccagctcaag
     2341 cccaatccag cggttttgat ttgtcgggta cgcggtctgc acttgccgga aaaacatgtc
     2401 acctggcgtg gtgaggcaat ccccggcagc ctgtttgatt ttgcgctcta tttcttccac
     2461 aactatcagg ctctgttggc aaagggcagt ggtccctatt tctatctgcc gaaaacccag
     2521 tcctggcagg aagcggcctg gtggagcgaa gtcttcagct atgcagaaga tcgctttaat
     2581 ctgccgcgcg gcaccatcaa ggcgacgttg ctgattgaaa cgctgcccgc cgtgttccag
     2641 atggatgaaa tccttcacgc gctgcgtgac catattgttg gtctgaactg cggtcgttgg
     2701 gattacatct tcagctatat caaaacgttg aaaaactatc ccgatcgcgt cctgccagac
     2761 agacaggcag tgacgatgga taaaccattc ctgaatgctt actcacgcct gttgattaaa
     2821 acctgccata aacgcggtgc ttttgcgatg ggcggcatgg cggcgtttat tccgagcaaa
     2881 gatgaagagc acaataacca ggtgctcaac aaagtaaaag cggataaatc gctggaagcc
     2941 aataacggtc acgatggcac atggatcgct cacccaggcc ttgcggatac ggcaatggcg
     3001 gtattcaacg acattctcgg ctcccgtaaa aatcagcttg aagtgatgcg cgaacaagac
     3061 gcgccgatta ctgccgatca gctactggca ccttgtgacg gtgaacgcac cgaagaaggt
     3121 atgcgtgcaa atattcgcgt agccgtgcag tacatcgaag cgtggatctc tggcaacggc
     3181 tgtgtgccga tttatggcct gatggaagat gcggcgacgg ctgaaatttc ccgtacctca
     3241 atctggcagt ggatccatca tcaaaaaatg ttgagcaatg gcaaaccggt aactaaagcc
     3301 ttgttccgcc agatgctggg cgaagagatg aaagtcattg ccagcgaact gggcgaagaa
     3361 cgtttctccc aggggcgttt tgacgatgcc gcacgcttga tggaacagat caccacttcc
     3421 gatgagttaa ttgatttcct gaccctgcca ggctactgcc tgttagcgta aaccaccaca
     3481 taactatgga gcatctgcac atgaaaaccc gtacacaaca aattgaagaa ttacagaaag
     3541 agtggactca accgcgttgg gaaggcatta ctcgcccata cagcgcggaa gatgtggtga
     3601 aattacgcgg ttcagtcaat cctgaatgca ccctggcgca actgggcgcg gcgagaatgt
     3661 ggcgtctgct gcatggcgag tcgaaaaaag gctacatcaa cagcctcggt gcactgactg
     3721 gcggtcaggc gctgcaacag gcgaaagcgg gtattgaagc agtctatctg tcgggatggc
     3781 aggtagcggc ggacgctaac ctggcggcca gcatgtatcc ggatcagtcg ctctatccgg
     3841 caaactcggt gccagctgtg gtggagcgga tcaacaatac tttccgccgt gcggatcaga
     3901 tccaatggtc cgcgggcatt gagccgggcg atccgcgcta tgtcgattac ttcctgccga
     3961 tcgttgccga tgcggaagcc ggttttggcg gtgtcctgaa tgcctttgaa ctgatgaaag
     4021 cgatgattga agccggtgca gcggcagttc acttcgaaga tcagctggcg tcagtgaaga
     4081 aatgcggtca catgggcggc aaagttttgg tgccaactca agaagctatt cagaaactgg
     4141 tcgcggcgcg tctggcagct gacgtgacgg gcgttccaac cctactggtt gctcgtaccg
     4201 atgccgatgc agcggatctg atcacctccg attgcgaccc gtatgacagc gaatttatta
     4261 ccggcgagcg taccagtgaa ggcttcttcc gtactcatgc gggcattgag caagcgatca
     4321 gccgtggcct ggcgtatgcg ccatatgctg acctggtctg gtgtgaaacc tccacgccgg
     4381 atctggaact ggcgcgtcgc tttgcacaag ctatccacgc gaaatatccg ggcaaactgc
     4441 tggcttataa ctgctcgccg tcgttcaact ggcagaaaaa cctcgacgac aaaactattg
     4501 ccagcttcca gcagcagctg tcggatatgg gctacaagtt ccagttcatc accctggcag
     4561 gtatccacag catgtggttc aacatgtttg acctggcaaa cgcctatgcc cagggcgagg
     4621 gtatgaagca ctacgttgag aaagtgcagc agccggaatt tgccgccgcg aaagatggct
     4681 ataccttcgt atctcaccag caggaagtgg gtacaggtta cttcgataaa gtgacgacta
     4741 ttattcaggg cggcacgtct tcagtcaccg cgctgaccgg ctccactgaa gaatcgcagt
     4801 tctaagcaac aacaaccgtt gctgactgta ggccggataa ggcgttcacg ccgcatccgg
     4861 caatcggtgc acgatgcctg atgcgacgct tgcgcgtctt atcatgccta cagccgttgc
     4921 cgaacgtagg ccggataagg catttacgcc gcatccggca attctctgct cctgatgagg
     4981 gcgctaaatg ccgcgtggcc tggaattact gattgctcaa accattttgc aaggcttcga
     5041 cgctcagtat ggtcgattcc tcgaagtgac ttccggggcg cagcagcgtt tcgaacaggc
     5101 cgactggcat gctgtccagc tggcgatgaa aaaccgtatc catctttacg atcatcacgt
     5161 tggtctggtc gtggagcaac tgcgctgcat tactaacggc caaagtacgg acgcggcatt
     5221 tttactgcgc gttaaagagc attacacgcg gctgttgccg gattacccgc gcttcgagat
     5281 tgcggagagc ttttttaact ccgtgtactg tcggttattt gaccaccgct cgcttactcc
     5341 cgagcggctt tttatcttta gctctcagcc agagcgcagc tttcgtacca ttccccgccc
     5401 gctggcgaaa gactttcacc ccgatcacgg ctgggaatct ctactgatgc gcgttatcag
     5461 cgacctgccg ctgcgcctgc gctggcagaa taaaagccgt gacattcatt acatcattcg
     5521 ccatctgacg gaaacgctgg ggacagacaa cctcgcggaa agtcatttac aggtggcgaa
     5581 cgaactgttt taccgcaata aagccgcctg gctggtgggc aaactgatca cgccttccgg
     5641 cacgttgccc ttcttactgc cgatccacca gacggacgac ggcgagttat ttattgatac
     5701 ctgcctgacg acgaccgccg aagcgagcat tgtttttggc tttgcgcgtt cttattttat
     5761 ggtttatgca ccgctgcccg cagcgctggt cgagtggcta cgggaaattc tgccaggtaa
     5821 aaccactgct gaattgtata tggctatcgg ctgccagaag cacgccaaaa ccgaaagcta
     5881 ccgcgaatat ctcgtttatc tacagggctg taatgagcag ttcattgaag cgccgggtat
     5941 tcgtggaatg gtgatgttgg tgtttacgct gccgggcttt gatcgggtat tcaaagtcat
     6001 caaagacaag ttcgcgccgc agaaagagat gtctgccgct cacgttcgtg cctgctatca
     6061 actggtgaaa gagcacgacc gtgtgggccg aatggcggac acccaggagt ttgaaaactt
     6121 tgtgctggag aagcggcata tttccccggc attaatggaa ttactgctcc aggaagcagc
     6181 ggaaaaaatc accgatcttg gtgagcagat tgtaattcgc catctctata tcgagcggcg
     6241 gatggtgccg ctcaatatct ggctggaaca agtggaaggt cagcagttgc gcgacgccat
     6301 tgaagaatac ggtaacgcta ttcgccagct tgccgctgct aacatttttc ctggcgacat
     6361 gctgtttaaa aacttcggtg tcacccgtca cgggcgtgtg gttttttatg attacgatga
     6421 aatttgctac atgacggaag tgaatttccg cgacatcccg ccgccgcgct atccggaaga
     6481 cgaacttgcc agcgaaccgt ggtacagcgt ctcgccgggc gatgttttcc cggaagagtt
     6541 tcgccactgg ctatgcgccg acccgcgtat tggtccgctg tttgaagaga tgcacgccga
     6601 cctgttccgc gctgattact ggcgcgcact acaaaaccgc atacgtgaag ggcatgtgga
     6661 agatgtttat gcgtatcggc gcaggcaaag atttagcgta cggtatgggg agatgctttt
     6721 ttgagtaaag cttccatata atttttctcc gcaatgtatc gagggttatc cgtaaagcca
     6781 aagctttcag ccatcttatt taatgtatta aggattaatt cagcaataac ccggtgacca
     6841 aattcaaaag ccaactcaaa ggcagagtat ttttgtggcg ctttgtgttg ccaaaaatcc
     6901 ataatatctt cagcggtaaa tccaaacagg cgtgcatgg
//
LOCUS       DAJVUN010000196         6886 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.196, whole genome shotgun sequence.
ACCESSION   DAJVUN010000196 DAJVUN010000000
VERSION     DAJVUN010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6886
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.196"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(164..814)
                     /gene="zinT"
                     /locus_tag="OQQ76_003519"
     CDS             complement(164..814)
                     /gene="zinT"
                     /locus_tag="OQQ76_003519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein ZinT"
                     /protein_id="HCS1969868.1"
                     /translation="MAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV
                     FDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYA
                     TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK
                     YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH"
     gene            complement(1071..1706)
                     /gene="msrQ"
                     /locus_tag="OQQ76_003520"
     CDS             complement(1071..1706)
                     /gene="msrQ"
                     /locus_tag="OQQ76_003520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HCS1969869.1"
                     /translation="MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQ
                     HFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV
                     NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL
                     APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV"
     gene            complement(1707..2711)
                     /gene="msrP"
                     /locus_tag="OQQ76_003521"
     CDS             complement(1707..2711)
                     /gene="msrP"
                     /locus_tag="OQQ76_003521"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HCS1969870.1"
                     /translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISAAALSLPHAAHA
                     DLLSWFKGNDRPPAPAGKPLEFSKPAAWQNNLPLTPVDKVSGYNNFYEFGLDKADPAA
                     NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP
                     LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT
                     LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG
                     FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYADQVASLYRGLDLRENF
                     "
     gene            complement(2820..3233)
                     /gene="hiuH"
                     /locus_tag="OQQ76_003522"
     CDS             complement(2820..3233)
                     /gene="hiuH"
                     /locus_tag="OQQ76_003522"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HCS1969871.1"
                     /translation="MLKRYLVLSVATAAFSLPSLVYAAQQNILSVHILNQQIGKPAAD
                     VTVTLEKKSDNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLES
                     FFPEIPVEFHINKVNEHYHVPLLLSQYGYSTYRGS"
     gene            3366..4037
                     /gene="hprR"
                     /locus_tag="OQQ76_003523"
     CDS             3366..4037
                     /gene="hprR"
                     /locus_tag="OQQ76_003523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707854.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor HprR"
                     /protein_id="HCS1969872.1"
                     /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
                     YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF
                     SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
                     SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF
                     VAVKK"
     gene            4037..5395
                     /gene="hprS"
                     /locus_tag="OQQ76_003524"
     CDS             4037..5395
                     /gene="hprS"
                     /locus_tag="OQQ76_003524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     HprS"
                     /protein_id="HCS1969873.1"
                     /translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT
                     LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKIVNRTNVSDGMLN
                     NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN
                     SIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSVLPRELKPL
                     GQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA
                     GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF
                     KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNGYLNIDVASPGTK
                     IHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRIMLPQ
                     RN"
     gene            complement(5503..6354)
                     /gene="hchA"
                     /locus_tag="OQQ76_003525"
     CDS             complement(5503..6354)
                     /gene="hchA"
                     /locus_tag="OQQ76_003525"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase HchA"
                     /protein_id="HCS1969874.1"
                     /translation="MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKP
                     YRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMT
                     KFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG
                     LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTP
                     EIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKVLTGDSPFAANALGKLAAQE
                     MLAAYAG"
BASE COUNT         1894 a         1416 c         1632 g         1944 t
ORIGIN      
        1 tccgttattg gttaactcaa tgcgggttag cttattaata tacagacacg tcatagtgat
       61 gagcgtgtct gtagctagct tgcgttcagt ggcgtttgtg gatggaccag tggcagttat
      121 gatgacttac taaagcggca tcgaggcgtt atcatgagaa tactcaatga gacatcattt
      181 cctcgaccac ttcttcgcta ctcaactgat atggataata cgttggccag ttttccattt
      241 catttaataa agattgctgt gaatcattac ccataaaaat gtgaaaatga gatgattttc
      301 gtggtgcaat tatatgatcg ctaaattgta tatatttagg ggctttgctt tcaggatctt
      361 tacattcgaa taagtaacga acgcctttct tgcctgattt ataggtgagt attttgtatc
      421 catcgtaatc atatttacag gatgttgttt cattatttct atggaattca acaatgccgt
      481 cctcaatgcc aatcatctcg atatctgttg cataaccttt gtgataataa tctttaattt
      541 cagcaaatgt tttagtttta tctgcatccg ctttcttctg aaagacgggg tcaagtttgc
      601 cactttgcag taaaggataa acggattgcc agactccatc ccagtcactg agcgttcggt
      661 tttgtacatt ggcatcatca aaaacaccat tagcagcttt ttgttcgacc tctgttaagg
      721 gtttgccgtg tgagtgatga ccatgcgaaa aggcaggagc gctaacaata aagacaccta
      781 acgcaacagc cagtttgtga agacgaatcg ccaaaacagt ttcctccaga gtcattgtat
      841 atgatgtgta atgttatatt gtaacatatg gcaaaatgca acaactctta ggagatgaga
      901 gcatagtttt ctcaggtgta cttatctatc ttattgaaat aaaatgaatt atattgataa
      961 tttgaggttg atgacaaacg aaacataatc tgatgtgatc tgcgtaggcc ggatagggcg
     1021 ctcgcgccgc atccggcagg gataacgcgt actttgtcgg caatatgaag ttatacagat
     1081 aatttgttgt gaacctgctt gcgtaaccgg ttaaaaaggg aacgcaactt cttataccgt
     1141 aaggctaaaa gcagtacagc cagcccagcg tagatgagcg gctgcggtga aataatcttc
     1201 actgaccaca gataatgtat tggggccagg atcgcgacaa gatagacgaa attatgcaac
     1261 tgttgccagt gcttgccgag ttttcgctgc atcgcctggg ttgaagtaaa cgctaaagca
     1321 agcaaaataa cccagctgat aattcctaac gttaaataag gccgggtaat taactccttg
     1381 cctaataacg ccagattatt cacgcccagc tccagcaatg cgtaactggt taaatgcagt
     1441 gtcgcccagg caaagcacca taagcctaac aggcggcgag tgcgtatcaa taacggctgt
     1501 tttgcgtagc gtgccagagg tgtgattaac aaggtcgcca gcaaaaattt cagtgcagtg
     1561 cgaccggtaa aatgctgaat atctttcacc ggatcggcac ccagtccacc gtgattgatc
     1621 gcccagacca gccagagaaa cggcaacaat ccggcaagat gcaggctaac tttcagccat
     1681 gtcacctgtt ttgctgtcag acgcattcag aaattctccc gcaaatccag gccacgatac
     1741 agcgatgcca cctggtcggc gtaaccatta aacagtagcg ttggctggcg ctgaacatcg
     1801 aggatgccgc ctgaaccaat aaatcgttcg gtagcctgtg accagcgcgg gtgatcaaca
     1861 tgcggattaa cgttggcgta aaaaccgtat tcgtcaggcg ctgccagatt ccaggtggtt
     1921 ggcggacgct cgcgggtcag cttaatactg actatcgatt taatcccttt aaagccatat
     1981 ttccacggca caatcagtcg taccggcgcg ccattttgtg gcggtaacgc cttgccataa
     2041 acacccacgg tcatcagtgt gagcggatgc attgcttcgt cgagacgcaa tccttcgaca
     2101 taaggatatt tcagcccgcc gccgataaag cggtcctgct ggcctggcat ttgttccggt
     2161 gcataaattg tttcgaaagc gacatacttc gcattgctgg tgggttcggc aagcgccagc
     2221 aatttgtgca gcggaaaacc aatccacggc accaccatcg accatgcctc cacgcagcgc
     2281 atacgataaa tacgctcttc cagcgggaag cgacgggtta aatcatcgtg atcgagggtc
     2341 aatggttttg ccacttcgcc gctgattttc agtgtccatg gatcggtttt caggctacca
     2401 gcattagcgg cgggatcggc tttatccagc ccgaattcat agaagttgtt ataaccggag
     2461 actttatcta ctggcgtcag tggcaggtta ttttgccagg cggcaggctt gctgaactcc
     2521 agcggttttc cggcgggggc gggcgggcga tcgttccctt taaaccagct aagcagatcg
     2581 gcatgcgcag cgtgaggcaa agaaagtgca gctgcactga tgcccagtgc ttttaacacc
     2641 tgccgacgct tcataaagaa taccgactcg gccgtaacat ctgattcttt taaaaattga
     2701 ttctttttca taagccatca cacttttttg tcgttagcca gcaagagccg tttactgtta
     2761 atctgtcagg gagtgtcctc cctaacagta gcagagatct gcttttacat atttatgcat
     2821 taactgccac gataggttga atacccatat tggctaagta ataaaggcac atgataatgc
     2881 tcgttcactt tattaatatg aaattcaacg gggatctcag ggaagaaact ttcaagattt
     2941 tgtttcttga aatagtcccc ggttttaaat acgacacggt aatcgcccgt agttgcagtt
     3001 tgctcgggcc acagtgcctt aattcgtcca tccttatctg ttttggcggt attaagttgt
     3061 aaccagccgt tgtccgattt cttttcaaga gtgactgtca cgtcggcagc gggttttcct
     3121 atttgctggt tcaaaatgtg cacgctaaga atgttttgtt gtgcggcata aaccaaagaa
     3181 ggtaatgaaa atgctgccgt tgctaccgag agtactaaat aacgctttaa catgtttata
     3241 tccttgtcat gtgaatgagt tttgaggata gcgaaaaaat gtccagggta accttacagc
     3301 agcattacaa ttttgtaatg aaccaggctg tttctataac atatgattta tggcatatta
     3361 ttttcatgaa gattttactt attgaagata atcaaaggac ccaggaatgg gtaacacaag
     3421 ggctttccga agcgggttat gtcattgatg ccgtttctga tggcagagat gggctttatc
     3481 ttgcgctgaa ggatgattat gcattgatca ttctggatat tatgcttccg ggtatggatg
     3541 gctggcagat cttacaaacg ttaagaacag caaagcaaac ccctgttatt tgccttactg
     3601 caagggattc tgtcgatgac agagtcagag ggctggacag tggagcaaat gattatctgg
     3661 taaaaccttt ttcattttct gagttgctgg caagggttcg ggcacaatta aggcaacatc
     3721 acgctttgaa ttcaacatta gaaatcagtg gcttaagaat ggactctgta agtcaaagtg
     3781 tgagcaggga caatatcagt attacactga cgcgcaagga gtttcagtta ctttggctac
     3841 tggcctccag agctggcgaa attataccca gaacggttat tgcgagtgaa atttggggaa
     3901 tcaactttga tagtgatacc aatacggtgg atgtcgccat tcgcaggctc cgcgcaaaag
     3961 ttgatgatcc ttttcctgaa aagctaatcg ccacaatacg ggggatgggc tattcattcg
     4021 tagcggtaaa aaaataatga aaagattgtc tataaccgtc cgtttaacct tgctttttat
     4081 attgctgctg tctgttgctg gcgctggaat tgtatggact ctctataatg gcctggcaag
     4141 tgagttgaaa tggcgcgatg atacaacact cattaaccgg acagcgcaga tcaagcagtt
     4201 gttaattgat ggggtaaatc cagatacgtt acctgtgtac tttaaccgga tgatggatgt
     4261 tagtcaggat atcttgatca ttcatggtga tggtatcaat aaaattgtta accggacaaa
     4321 tgtcagtgat ggcatgttaa ataacatacc tgctagtgag acaatcagcg cagctggcat
     4381 ttacagaagc attattaatg acactgagat tgatgcttta cgaattaata ttgatgaagt
     4441 ttcgccatca ttaacggtta ctgtggctaa attggcttca gccagacata acatgcttga
     4501 acagtataaa attaatagca ttataatttg cattgtcgcc attgtacttt gctcagtatt
     4561 aagtccgctg ttaatcagaa cgggattacg agagatcaaa aagttgagtg gtgtaacgga
     4621 agcgctgaat tataacgata gccgggagcc tgttgaggtt agcgtattac cgagagaact
     4681 aaaacctctt gggcaggcgt tgaataaaat gcatcaagcc ttagtcaaag attttgaacg
     4741 cctaagtcaa tttgctgacg atctcgctca tgaacttaga acgcccatta atgcattact
     4801 gggtcagaat caggttacgc tcagtcaaac cagaagtatc gctgaatatc aaaaaacaat
     4861 tgccggtaac attgaagagc tggaaaatat ttcgcggtta acagagaaca tactgtttct
     4921 tgcccgggca gataaaaaca atgttttggt gaaactggac tcgctttctc tcaataagga
     4981 agtcgaaaat ttgttggatt atcttgaata cctttcagac gagaaagaga tttgctttaa
     5041 ggtcgagtgc aatcagcaaa tctttgcgga taaaatttta ctgcaacgaa tgttatcgaa
     5101 tcttattgtt aatgccatta gatattcacc agaaaaatcg cgtattcata taaccagttt
     5161 tcttgatacc aacggctatc ttaatattga tgtcgccagt cctggaacga aaattcatga
     5221 gcctgaaaaa ctcttccgta gattttggcg gggagataat tcgcgtcatt ccgtaggtca
     5281 gggacttggt ctttctttag tcaaagcgat tgccgaatta catgggggaa gtgctacgta
     5341 tcactatctc aataaacata atgtgttccg gattatgtta ccgcaaagaa attaacatag
     5401 ggcttcagta cgccataaat caaccatgaa aaaacgcagc cacgtcgtga gtattaacgt
     5461 ggctgcgatt gattatgcgc ttacattcat acgtaacagg gattaacccg cataagctgc
     5521 cagcatttcc tgcgccgcca gtttacccaa cgcattcgct gcgaaaggac tgtcgccggt
     5581 gagaacttta cggtccttat gtactcgccc ggtgatgtcg tcattaataa tgttcatgcc
     5641 cattttcttc agctcttcgc cgaagtacca ggtgagatga cccggcatat agcctatctc
     5701 tggcgtttgt ttgtctgcgg cgtctgggaa tgcgcaaatg gaataaccat tcagtgggtt
     5761 atcgccgtgg cgaagcgcca gaaaagccgc cgggccgtgg caaagggaga taacaaaacg
     5821 gtcatttttg attgcccact gtaaagcggc agctacgtcc tggctttcag gtaaaccaat
     5881 aagtgcgcca tgaccaccag gaacaaagat tgctgcatat tcgctatcag cgttgaggct
     5941 ggcgacaaca tccgcgagtt tcttcggatt gcggaacaac gatttatgct gctcaaagaa
     6001 tggcattact ttttcatctt tgtgcggcat agcccagtat tcaaacttgg tcatcagacc
     6061 ggaaatggtc gccacttcga attcgaaacc tgcagcatgg agatgataca acggcagcaa
     6121 cgtttcaatc ggatggttac cggtcgagaa cagttttccg ttatcggttg gcaaataacg
     6181 ttcgtccgcg gcgatcacca gaattttatg cttaccgcga tacggttttg gatagtccac
     6241 gccatcaaga tcagagacgg gactggtata ttggctaagc gaatattctg aagggaagaa
     6301 cgcattatct tcagcaatat cgacctgcgg atttttactt gtttgaacag tcatagtgta
     6361 ttccttattg ttgcttagtt agggtagtca ctatatttgc gactgagctg gtcgctattt
     6421 ttaaccaggc tggaaaattg agtcaatata tcgaaagcgg tagtcggcgg gtgtaagtat
     6481 gtaatgatga tgctgcactg gtgttgaata ttattcacgc caaattttcc ttattgagca
     6541 acgtcgtcgc aagtggcctc aatgatttta gaccattatc agagatgcgg ggcggtgggg
     6601 agagatttag tgatgtggaa tattgtggtg ctgatgaata tttatatcgc ggattggtag
     6661 agaaaaagct tatttcatgc actatttttg caaagatttc tatttgggaa gcgtgtttgt
     6721 tacggggtaa ttcatcagaa tgtgcatttg gggtgttggc tggaagagtc gctggtagat
     6781 gttattgtgg caggaggggc agggtaaggt gctgtatcga tatgctttgg caattgcgtg
     6841 tgccgcagat ggagatgaaa tgccaataaa aaagcctgag ttcgat
//
LOCUS       DAJVUN010000197         6821 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.197, whole genome shotgun sequence.
ACCESSION   DAJVUN010000197 DAJVUN010000000
VERSION     DAJVUN010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6821
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.197"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            153..518
                     /locus_tag="OQQ76_003526"
     CDS             153..518
                     /locus_tag="OQQ76_003526"
                     /inference="COORDINATES: protein motif:HMM:TIGR02601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969875.1"
                     /translation="MDENNSAAGYGDGPSTAAGGFMYLGLSEVTFDIADGKTLVIGNT
                     ENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTH
                     CQDDPQDCYGLTIGSIDKY"
     gene            561..2552
                     /locus_tag="OQQ76_003527"
     CDS             561..2552
                     /locus_tag="OQQ76_003527"
                     /inference="COORDINATES: protein motif:HMM:NF007285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1969876.1"
                     /translation="MHSLTGFQNGTLNIDAGGNVTVNQGSFAGTIEGAGQLTIAQNGS
                     YVLSGAQSMALTGDIVVDDGAVLSLEGDAADLAALQDDPQSIVLNGGVLDLSDFSTWQ
                     SGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLAN
                     NNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITANVDTRTTTTEH
                     GRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTFTKTGAGTLELTASGTTQS
                     AVRVEEGTLKGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISDGTVL
                     RLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLADVTVNGDLTN
                     TSGAVSLQNGVAGDTLTVNGDYTGGGTLLFDSELNGDDSVSDQLVMNGNTAGNTTVVV
                     NSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYL
                     RSQEVTPPSPPDPDPDPTPDPDPTPDPIPAYQPVLNAKVGGYLNNLRAANQAFMMERR
                     DHAGGDGQTLNLRVIGGRYHYTVAGQLAQQEDTSTVQLSGGLFSGRWGTDGEWMLGAV
                     GGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGN"
     gene            2568..3080
                     /locus_tag="OQQ76_003528"
     CDS             2568..3080
                     /locus_tag="OQQ76_003528"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HCS1969877.1"
                     /translation="MDSWLQYAWFNNDVSEHEDGVDRYHSSGIIASLEAGYQWLPGRG
                     VVIEPQAQVIYQDVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVGVTPTLDLN
                     YYHDPHATEIEEDGSTISDDAVKRRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQT
                     AGFLSMTVKW"
     gene            complement(3208..3930)
                     /locus_tag="OQQ76_003529"
     CDS             complement(3208..3930)
                     /locus_tag="OQQ76_003529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-demethylubiquinone
                     3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol
                     methylase"
                     /protein_id="HCS1969878.1"
                     /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR
                     LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG
                     IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTL
                     NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP
                     LTNTFKLGPGVDVNYMLHTQNK"
     gene            4077..6704
                     /gene="gyrA"
                     /locus_tag="OQQ76_003530"
     CDS             4077..6704
                     /gene="gyrA"
                     /locus_tag="OQQ76_003530"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HCS1969879.1"
                     /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP
                     TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK
                     IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM
                     VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP
                     IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL
                     TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL
                     VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG
                     KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP
                     LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL
                     IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG
                     DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI
                     TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA
                     EGDDEIAPEVDVDDEPEEE"
BASE COUNT         1644 a         1681 c         1959 g         1537 t
ORIGIN      
        1 attatctgaa cataaaacac tatcagtaag ttggagtcat taccaacact gccgaaggtt
       61 atggcggggc gatatatacc aatagcgcga cggctcccta tcttattgat atttctgttg
      121 atgacagcta cagccagaac ggcggcgtgt tagtggatga gaacaacagc gcagcaggct
      181 atggagatgg tccttccact gcggcgggtg gctttatgta tctcggctta agtgaagtta
      241 cctttgatat tgccgacgga aaaacgctgg ttatcggcaa tacagagaat gacggagctg
      301 ttgactctat tgctggtacc gggttgatca ccaaaacagg ttccggcgat ctggtactta
      361 atgcagataa caatgacttt actggcgaga tgcagattga aaacggtgaa gttaccctgg
      421 gccgcagcaa ctccctgatg aatgtcggcg atacgcattg ccaggacgat ccgcaagact
      481 gctacggtct gacgataggg agtattgata agtactagaa tcaggcagag ctaaacgttg
      541 gctccaccca acaaaccttt gtgcactcat tgacgggctt tcagaatggc actttaaata
      601 tcgatgctgg tggcaatgtt actgttaatc aaggtagttt tgctggcacc atcgaaggtg
      661 ctggtcagct caccattgcg caaaacggca gctacgtgct gtcgggggcg cagtcgatgg
      721 cgctaaccgg cgatatagtc gttgatgatg gtgcggtgct ttcgctggaa ggcgacgcgg
      781 cagatctcgc cgctctccag gacgatccgc agtcgatcgt gttaaacggc ggtgtgctcg
      841 atctctctga tttctccacc tggcagagcg gcacatcata caatgatggc cttgaagtca
      901 gtggcagcag cggaacggtt atcggcagtc aggatgtggt agatcttgca ggtggcgaca
      961 atttgcatat cggcggcgac gggaaagatg gcgtctacgt ggtggtcgat gcgagcgacg
     1021 ggcaggtaag tctggcaaac aataatagtt atttgggcac aacacaaatc gcctccggta
     1081 cgctgatggt gagcgacaac tcgcagcttg gagataccca ctataaccgc caggttatct
     1141 ttaccgataa gcaacaagaa agcgtgatgg agattactgc caatgtcgat actcgcacta
     1201 cgacgactga gcatgggcgt gatattgaaa tgcgcgccga cggtgaagtg gcagttgatg
     1261 cgggggtaga cacgcagtgg ggcgcactga tggctgacag cagcgggcag catcaggatg
     1321 agggtagcac atttactaaa acgggggcgg gtacgctgga gctgaccgcc agcggtacaa
     1381 cgcagtcggc agtacgtgtc gaagaaggca ccctgaaagg cgatgttgcg gatatctttc
     1441 cttatgcttc gtcactgtgg gtcggtgatg gggcgacgtt cgttactggc gcggatcagg
     1501 atattcagtc tatcgatgct acttccagcg gcactatcga tatcagcgat ggtacggttt
     1561 tgcgtctgac cgggcaggat acttccgtcg cccttaatgc ctcattgttt aacggcgatg
     1621 ggacgctggt gaatgctacc gatggcgtga cgttgacagg tgagcttaat accaaccttg
     1681 aaactgacag cctgacctat cttgccgacg tgacggttaa tggtgatctg accaatacgt
     1741 ccggtgcggt tagcctgcaa aatggcgtcg ctggcgatac gctaacggta aacggtgatt
     1801 ataccggcgg cggtacgcta ctgttcgaca gcgaattaaa cggcgatgac tcggtaagcg
     1861 atcaattggt gatgaacggt aatactgctg gcaacacaac tgtggtggtt aactccatta
     1921 cagggattgg tgagccgaca tcgacaggca ttaaagtggt tgatttcgca gctgatccca
     1981 cgcagtttca aaacaatgca cagttcagtc tggctggcag tggctacgtc aacatgggag
     2041 cgtatgacta cacgctagtg gaagataaca acgactggta tctgcgatcg caagaagtaa
     2101 cgccgccatc gccacctgat ccagacccgg acccaacacc cgatcctgac ccaacacccg
     2161 atccaatccc cgcttaccag ccggtgctga atgccaaagt tggcggttat ctcaataacc
     2221 tgcgggcggc aaatcaggcg tttatgatgg agcgacgcga tcacgctggt ggcgatggtc
     2281 agacgctgaa tttacgtgtt atcggcggac gttatcatta cacggtggca gggcaactgg
     2341 ctcagcagga agacacttct acggtgcagc ttagcggcgg cttgtttagc gggcgctggg
     2401 gcacggatgg cgagtggatg cttggggcgg ttggtggcta cagtgataat cagggcgaca
     2461 gccgctcgaa tatgaccgga actcgcgccg ataaccagaa ccacggttat gccgttgggc
     2521 tgacctcaag ctggtatcag cacggtaatt agaagcaggg ggcctggctg gatagctggc
     2581 tgcaatacgc gtggtttaac aatgatgttt ccgaacatga agatggcgtg gatcgttacc
     2641 attcgtcggg gattatcgcc tcgctggaag ccgggtatca gtggttaccg gggcgtggtg
     2701 tggtgattga accgcaggcg caggtgattt atcaggacgt gcagcaggat gattttaccg
     2761 ccgctaacca tgcgcgcgtg tcacaatcgc agggggatga tattcagacg cggctgggtt
     2821 tacacagcga atggcgtacc gcggttggtg tcacaccaac attagatctg aattattatc
     2881 acgatcccca tgcgacggaa attgaagaag atggcagcac tatcagtgac gatgcggtga
     2941 agcgacgggg tgaaataaaa gtgggagtca cgggcaatat cagtcagcga gtgtccctgc
     3001 gcggcagcgt ggcgtggcag aaagggagtg atgattttgc ccagacggca gggtttttgt
     3061 cgatgacggt gaaatggtaa tcactgtcta gtcggcacgg ttgccggatg cggcgtaaac
     3121 gccttatccg gcctacgggg agcatttgta ggcctgataa gacgcggcaa gcgtcgcatc
     3181 aggcattggc tcggccaaac aacaacctca cttattctgc gtgtgcagca tatagttcac
     3241 atccacgccg gggccgagtt taaaagtatt agtgagcggg ttgtaatgta gcccggttat
     3301 atgtcgctct ttaaggcttg tctgatctac ccagccaagc agttctgccg gtttaataaa
     3361 cttcttcaca tcatgcgtgc ctttgggcac catgcgcaaa atatattccg cgccaaccac
     3421 cgccatcagc catgacttgc cgttgcggtt aagcgtcgag aaaaagacat cgccgcctgg
     3481 tttcaccagt tgcgcacagg ctctgaccac tgactgcgga tcggggacgt gctccagcat
     3541 ctccatgcag gtcaccacat catactgccc ggcatgtttt gccgcgtgct cttccacggt
     3601 ttcctgcaca taatccacct gaatgccgct ttccagcgcg tgcagttttg ccacctgcaa
     3661 tggctcaaag cccatatcca gaccggtcac cgtcgcgcct tcgcgcgcca tactctcggc
     3721 cagaatgccg ccgccacaac cgacatcgag cacctttttg ccaaataaac cgccagcacg
     3781 ctcggcaata tagcccagac gcagcgggtt aatgcggtgc aacggtttga actcaccttc
     3841 aagatcccac cagcgggagg cgacggcttc aaatttagcg atctcttcgt ggtctacgtt
     3901 atggttttcc ggcgattttt cggcattcat tggcacttct actccgtaat tggcaagaca
     3961 aacgagtata tcaggcattg gatgtgaata aagcgtatag gtttacctca aactgcgcgg
     4021 ctgtgttata atttgcgacc tttgaatccg ggatacagta gagggatagc ggttagatga
     4081 gcgaccttgc gagagaaatt acaccggtca acattgagga agagctgaag agctcctatc
     4141 tggattatgc gatgtcggtc attgttggcc gtgcgctgcc agatgtccga gatggcctga
     4201 agccggtaca ccgtcgcgta ctttacgcca tgaacgtact aggcaatgac tggaacaaag
     4261 cctataaaaa atctgcccgt gtcgttggtg acgtaatcgg taaataccat ccccatggtg
     4321 actcggcggt ttatgacacg atcgtccgta tggcgcagcc attctcgctg cgttacatgc
     4381 tggtagacgg tcagggtaac ttcggttcca tcgacggcga ctctgcggcg gcaatgcgtt
     4441 atacggaaat ccgtctggcg aaaattgccc atgaactgat ggccgatctc gaaaaagaga
     4501 cggtcgattt cgttgataac tatgacggca cggaaaaaat tcccgacgtc atgccaacca
     4561 aaattcctaa cctgctggtg aacggttctt ccggtatcgc cgtaggtatg gcaaccaaca
     4621 tcccgccgca caacctgacg gaagtcatca acggttgtct ggcgtatatc gatgatgaag
     4681 acatcagcat tgaagggctg atggaacaca tcccggggcc ggacttcccg acggcggcaa
     4741 tcattaacgg tcgtcgcggt attgaagaag cttaccgtac cggtcgcggc aaggtgtata
     4801 tccgcgctcg cgcagaagtg gaagttgacg ccaaaaccgg tcgtgaaacc attatcgtcc
     4861 acgaaattcc gtatcaggta aacaaagcgc gcctgatcga gaagattgcg gaactggtaa
     4921 aagaaaaacg cgtggaaggc atcagcgcgc tgcgtgacga gtctgacaaa gacggtatgc
     4981 gcatcgtgat tgaagtgaaa cgcgatgcgg tcggtgaagt tgtgctcaac aacctctact
     5041 cccagaccca gttgcaggtt tctttcggta tcaacatggt ggcattgcac catggtcagc
     5101 cgaagatcat gaacctgaaa gacatcatcg cggcgtttgt tcgtcaccgc cgtgaagtgg
     5161 tgacccgtcg tactattttc gaactgcgta aagctcgcga tcgtgctcat atccttgaag
     5221 cattagccgt ggcgctggcg aacatcgacc cgatcatcga actgatccgt catgcgccga
     5281 cgcctgcaga agcgaaaact gcgctggttg ctaatccgtg gcagctgggc aacgttgccg
     5341 cgatgctcga acgtgctggc gacgatgctg cgcgtccgga atggctggag ccagagttcg
     5401 gcgtgcgtga tggtctgtac tacctgaccg aacagcaagc tcaggcgatt ctggatctgc
     5461 gtttgcagaa actgaccggc cttgagcacg aaaaactgct cgacgaatac aaagagctgc
     5521 tggatcagat cgcggaactg ttgcgtattc ttggtagcgc cgatcgtttg atggaagtga
     5581 tccgtgaaga gctggagctg gttcgtgaac agttcggtga caaacgtcgt actgaaatca
     5641 ccgccaacag cgcagacatc aacctggaag atctgatcac tcaggaagat gtggtagtga
     5701 cgctctctca ccagggctac gttaagtatc agccgctttc tgaatacgaa gcgcagcgtc
     5761 gtggcgggaa aggtaaatct gccgcacgta ttaaagaaga agactttatc gaccgactgc
     5821 tggtggcgaa cactcacgac catattctgt gcttctccag ccgtggtcgc gtctattcga
     5881 tgaaagttta tcagttgccg gaagccactc gtggcgcgcg cggtcgtccg atcgtcaacc
     5941 tgctgccgct ggagcaggac gaacgtatca ctgcgatcct gccagtgacc gagtttgaag
     6001 aaggcgtgaa agtcttcatg gcgaccgcta acggtaccgt gaagaaaact gtcctcaccg
     6061 agttcaaccg tctgcgtacc gccggtaaag tggcgatcaa actggttgac ggcgatgagc
     6121 tgatcggcgt tgacctgacc agcggcgaag acgaagtaat gctgttctcc gctgaaggta
     6181 aagtggtgcg ctttaaagag tcttctgtcc gtgcgatggg ctgcaacacc accggtgttc
     6241 gcggtattcg cttaggtgaa ggcgataaag tcgtctctct gatcgtgcct cgtggcgatg
     6301 gcgcaatcct caccgcaacg caaaacggtt acggtaaacg taccgcagtg gcggaatacc
     6361 caaccaagtc gcgtgcgacg aaaggggtta tctccatcaa ggttaccgaa cgtaacggtt
     6421 tagttgttgg cgcggtacag gtagatgact gcgaccagat catgatgatc accgatgccg
     6481 gtacgctggt acgtactcgc gtttcagaaa tcagcatcgt gggccgtaac acccagggcg
     6541 tgatcctcat ccgtactgcg gaagatgaaa acgtagtggg tctgcaacgt gttgctgaac
     6601 cggttgacga ggaagatctc gataccatcg acggcagtgc cgcggaaggg gacgatgaaa
     6661 tcgctccgga agtggacgtt gacgacgagc cagaagaaga ataattttac ttcttcatgc
     6721 caaaagggag ctatctccct tgtttgaatt gaaaagtcca ggctgcaaag tctgggcttt
     6781 tgtcgtatta gggtacggta aagtttggct gtgcccgtaa a
//
LOCUS       DAJVUN010000198         6711 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.198, whole genome shotgun sequence.
ACCESSION   DAJVUN010000198 DAJVUN010000000
VERSION     DAJVUN010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.198"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            528..1304
                     /gene="exuR"
                     /locus_tag="OQQ76_003531"
     CDS             528..1304
                     /gene="exuR"
                     /locus_tag="OQQ76_003531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ExuR"
                     /protein_id="HCS1969880.1"
                     /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV
                     SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ
                     LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA
                     AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL
                     ENTKIMLFNETSEDFEFNADRYLFAENPVVHLDTATSGSK"
     gene            1648..2310
                     /locus_tag="OQQ76_003532"
     CDS             1648..2310
                     /locus_tag="OQQ76_003532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HCS1969881.1"
                     /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP
                     AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW
                     LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
                     GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN
                     RG"
     gene            2314..2697
                     /gene="mzrA"
                     /locus_tag="OQQ76_003533"
     CDS             2314..2697
                     /gene="mzrA"
                     /locus_tag="OQQ76_003533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EnvZ/OmpR regulon moderator MzrA"
                     /protein_id="HCS1969882.1"
                     /translation="MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVH
                     QGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYI
                     IAQQDNNSQAMQWLTRLRDNSHRFG"
     gene            2844..3212
                     /locus_tag="OQQ76_003534"
     CDS             2844..3212
                     /locus_tag="OQQ76_003534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HCS1969883.1"
                     /translation="MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQ
                     NRIDGLNKALSEVRANCSDSQLRADHHKKIAKQKDEVAERQQDLAEAKQKGDADKIAK
                     RERKLAEAQEELKKLEARDY"
     gene            3250..3555
                     /locus_tag="OQQ76_003535"
     CDS             3250..3555
                     /locus_tag="OQQ76_003535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HCS1969884.1"
                     /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE
                     QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR"
     gene            3558..3962
                     /locus_tag="OQQ76_003536"
     CDS             3558..3962
                     /locus_tag="OQQ76_003536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HCS1969885.1"
                     /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK
                     ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW
                     TLRKSRKSTLLRHTRHELANDRQLLEEESREQ"
     gene            3952..4251
                     /locus_tag="OQQ76_003537"
     CDS             3952..4251
                     /locus_tag="OQQ76_003537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqjK-like family protein"
                     /protein_id="HCS1969886.1"
                     /translation="MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWN
                     MLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG"
     gene            4437..4829
                     /locus_tag="OQQ76_003538"
     CDS             4437..4829
                     /locus_tag="OQQ76_003538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008503138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCS1969887.1"
                     /translation="MKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVP
                     GFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSKFAEGVNSLMFMKN
                     LTISGGFLLLAITGPGAYSIDRLLNKKW"
     gene            4899..5885
                     /gene="yqjG"
                     /locus_tag="OQQ76_003539"
     CDS             4899..5885
                     /gene="yqjG"
                     /locus_tag="OQQ76_003539"
                     /EC_number="1.8.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionyl-hydroquinone reductase YqjG"
                     /protein_id="HCS1969888.1"
                     /translation="MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTG
                     TGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSF
                     PGATGDTLYQNEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAF
                     DALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLA
                     RLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRD
                     IYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG"
     gene            6178..6543
                     /locus_tag="OQQ76_003540"
     CDS             6178..6543
                     /locus_tag="OQQ76_003540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HCS1969889.1"
                     /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML
                     GWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN
                     CQAGTPGENRFGPDPKLEP"
BASE COUNT         1739 a         1594 c         1635 g         1743 t
ORIGIN      
        1 atttaatctc aacttcattt tcctgaggcg tagatggatt atcgatacgg aatactgtcg
       61 ccttgatgta ctgaacttca ttacttttag atattacgcg aacgttgcct tcatcctgac
      121 tattaatgga aacagccata ggataaacag tcatatttga ctgtgccaaa aaaggagcga
      181 acacgaataa aagcggcgta agccgtgata agagattaat tttcgccacc atataaattt
      241 gatcttacaa tattgtttcc aaaaagttgg tgtattagag atgtagattt attgtaagtc
      301 aatataaaaa agcattttta gttaatatta aatttaaagg ctggggatta acttactgaa
      361 atttagtagc tttcacaatg acgatactta ttttttagga atttataaat attcacaata
      421 ttaattcaat acattaattc aatcaccaaa tttatatatg accaatggca tacccatgaa
      481 taaagtggta tgataacttc gtccgcattc cactccggga gacgcatatg gaaatcactg
      541 aaccacgccg tttgtatcaa caacttgccg ctgacctgaa agagcgcatt gaacagggcg
      601 tctatctggt gggtgataaa ctgcctgccg aacgctttat tgccgatgaa aagaacgtca
      661 gccgaacggt agttcgtgaa gccatcatca tgctggaagt tgaaggctat gtggaggtgc
      721 gtaaaggttc aggtattcat gtggtttcca accagccgcg ccatcagcag gcggctgaca
      781 ataatatgga attcgccaat tacggtccgt ttgagttgct tcaggctcgc cagctcatcg
      841 aaagtaatat tgccgagttc gcggcaactc aggtaacgaa acaagacatc atgaaactga
      901 tggccattca ggaacaggcg cgcggcgaac aatgcttccg tgattccgag tgggatttac
      961 agttccacat tcaggtagcc ctggcgacgc agaactccgc cctggcggcc atcgttgaaa
     1021 aaatgtggac ccagcgtagc cataacccgt actggaaaaa actacacgaa cacattgatt
     1081 cccgtaccgt tgataactgg tgtgatgacc acgatcaaat tctcaaggcg ttaattcgca
     1141 aagatcccca tgctgctaag ctggcaatgt ggcagcatct ggaaaacacc aaaatcatgt
     1201 tatttaacga aaccagcgag gatttcgagt tcaatgccga ccgctatcta ttcgccgaaa
     1261 acccggtagt gcatctcgat acggccacca gtggcagtaa atgaaactcc tgtccgacag
     1321 gcgctgcgcg cgcctgttcg cttcgtcggt aagcgaaaag tataaagtgt cagcctgtgt
     1381 aaatcctctc gccaccctcc cctgcattca gcaaaatcag actccacgga catgtaattt
     1441 tgataacgaa caacgttgac ctttgttaca attagattca atttgaattt atgtttttga
     1501 atgctttctt atctcacgat ttaacaggga atagttcagg ctgtgttgat gtatcaaacc
     1561 cgcagaacat accaaaacag caataacatt gcggtagtgc atcttttaaa accagcgtgg
     1621 cgttaaccga ttcaccagga ataatgaatg gaacttttga cccaattgct gcaagccctg
     1681 tgggcgcagg attttgaaac cctggccaat ccatcgatga ttggcatgtt gtattttgtc
     1741 ttgtttgtaa ttttgttcct tgaaaacggc ttgcttccag cggccttttt accgggcgac
     1801 agtttactgg tattggtcgg cgtgttgatt gcgaaaggcg cgatgggtta cccgcaaacg
     1861 attctgctgc tgaccgttgc cgccagcctc ggctgctggg tcagctatat tcaggggcga
     1921 tggctgggca atacccgcac cgtacaaaac tggctatctc atttacccgc gcattatcat
     1981 caacgcgcac accatctttt tcataaacac ggtttatcgg cgctgttaat tggtcgcttt
     2041 attgcgtttg tcagaacact gctgccgacg attgccgggt tatcagggct gaataacgcg
     2101 cgctttcagt ttttcaactg gatgagcggt ctgctgtggg tattgatcct gacaactctg
     2161 ggttacatgc tcggcaaaac gccggtattt ttaaagtacg aggaccagct gatgtcatgc
     2221 ctgatgctgc tcccggtggt gctgctggtg tttggcctgg caggttctct ggtcgtgtta
     2281 tggaaaaaga aatatggaaa tcgggggtaa gggatgcaaa tacctcgcat gtcgcttcgc
     2341 cagctagcct ggtccggcac tgttttactt ctggtcggca cgctgttgct ggcctggtcc
     2401 gcggttcgcc agcaagagtc tacgctggcg attcgtgccg ttcatcaagg cacaacgatg
     2461 ccagacggtt tttcgatctg gcatcacctt gacgctcatg gcattccttt caaaagtatc
     2521 acccccaaaa acgacactct gttaattaca tttgactcca gcgaccagag cgccgccgca
     2581 aaagcggtcc tcgacagaac attgccccat ggctacatca ttgcgcagca ggacaataac
     2641 agtcaggcta tgcagtggct gacccggtta cgggataact ctcatcgctt cggataactt
     2701 cctgttatcc gaaacatatc actcactttg gtgatttcac cgtaactgtc tatgattaat
     2761 gaggcggtgg ttaacactac cgcttcgttg tctggacaat cgttcctttg taataggtcc
     2821 gaatcacaat ggaaggttca agaatgaaat accgcatcgc tttagctgtt tctctctttg
     2881 ctcttagtgc cggtagttat gccactaccc tgtgtcagga aaaggagcaa aatatcctta
     2941 aggagatcag ctatgccgaa aaacaccaaa accagaatcg tattgacggt ctgaataaag
     3001 ccctgagtga agtccgggcc aactgttcag atagccagct gcgtgccgat catcacaaga
     3061 aaatcgcaaa gcagaaagat gaggtggcgg aacgccagca agatttagcc gaggcgaagc
     3121 aaaaaggcga tgccgataag attgccaaac gcgaacggaa actggcagaa gcgcaggaag
     3181 agctgaaaaa gctggaagcg cgcgactact aactcacaat agtcactact tactcacctg
     3241 gagaaaacta tgtcgaaaga acacactacg gaacatctgc gtgctgagtt gaaatccctt
     3301 tccgatacgc tggaagaggt gcttagctca tctggcgaga agtcgaaaga agagttgagt
     3361 aagattcgta gcaaagcgga gcaggcactg aaacagagcc gttatcgcct gggtgaaacc
     3421 ggtgatgcca tcgccaaaca aacccgtgtc gcggcggcgc gtgctgatga gtatgtgcgt
     3481 gaaaatccgt ggaccggcgt gggaattggc gctgcaatcg gtgtagtgct cggcgttctg
     3541 ctgtcgcgtc gttaattatg gcggacactc atcacgcgca agggcccggt aaaagcgttc
     3601 tgggcatcgg gcagcgaatt gtttccatca tggttgaaat ggtggaaaca cgtctgcggc
     3661 tggcggtggt ggagctggaa gaggaaaaag ctaatctctt tcaactttta ctgatgctgg
     3721 gcctgacgat gcttttcgct gcatttggtc ttatgagcct gatggtgcta attatttggg
     3781 cggttgatcc gcaatatcgc ctgaatgcga tgattgccac caccgtggtg ttgctgctac
     3841 tggcactgat tggcggtatc tggacgttac gtaaatcgcg taaatccacc ttgctgcgcc
     3901 atacacgcca tgagctggca aacgatcggc aactgctcga ggaggagtcc cgtgagcagt
     3961 aaagtcgaac gtgaacgacg taaggcgcaa ctgcttagcc agatccagca acaacggctg
     4021 gatctttccg ccagtcgtcg tgaatggctg gaggcaacag gcgcttacga tcgtcgctgg
     4081 aatatgctgc taagtctgcg ctcctgggcg ctggttggca gtagcgtgat ggcgatctgg
     4141 acgattcgcc atcctaatat gctggtccgc tgggccagac gcggttttgg cgtatggagc
     4201 gcctggcgtc tggttaaaac gaccctcaag cagcaacagc ttcgcggtta acttccctct
     4261 ggccggagcc attccggcct tatccctcaa attttttgaa gatttttgac agttttcctt
     4321 gctaacaatc atcattcacc acgtttatga ttctctccat cgacagcaac gacgctaata
     4381 ccgcgccctt gcacaaaaaa acaatcagca gcctgagtgg cgcagtggag agtatgatga
     4441 aaaaattaga agatgttggt gtactggtag cgcgcatttt aatgccgatt ctgtttatta
     4501 ccgcaggctg gggaaaaatc accgcttact ctggtaccca acaatatatg gaagcaatgg
     4561 gtgtcccggg ttttatgctg ccgctggtga ttctgcttga gttcggtggt ggtctggcta
     4621 tcctgttcgg tttcctgact cgcaccacag ccctgtttac tgcgggcttt acgctgctga
     4681 cggcattttt atttcacagc aagtttgctg aaggcgtcaa ctcgctgatg ttcatgaaaa
     4741 acctgacaat ttctggcgga ttcctgctgc tggcaattac cggtccgggc gcgtatagca
     4801 tcgaccgcct gctgaataaa aagtggtaag cacgcgctat acttaacgat aaaaaacgag
     4861 gaggaagctc ctcgtttttg ctattggagg agagaaaaat ggggcaactg attgacggcg
     4921 tctggcatga cacctggtac gataccaaat ctaccggcgg taaatttcaa cgttcagctt
     4981 ccgcatttcg taactggctc actgccgatg gcgcacctgg ccccactggc acaggcggtt
     5041 ttatcgcaga gaaagatcgt tatcatctct atgtttcact cgcctgcccg tgggcgcacc
     5101 gcacgctgat catgcgcaaa ctcaaaggac tggaaccgtt tatttccgtt tccgtagtga
     5161 acccgctgat gctggaaaac ggctggacct ttgatgacag ttttccggga gcaaccggag
     5221 atacgctcta tcaaaatgaa tttctgtatc agctttatct ccacgccgat ccacactaca
     5281 gcggacgagt tactgttccc gtgctgtggg acaaaaagaa ccacaccatt gtcagcaacg
     5341 aatcagcaga aatcatccgc atgttcaata ccgcgtttga tgcgctgggc gcaaaagcgg
     5401 gtgattacta cccaccagcc ctgcaaacga aaattgacga acttaacggc tggatttatg
     5461 acaccgttaa caacggcgtg tataaagctg gttttgccac cagccagcaa gcctacgacg
     5521 aggcggtggc gaaagtgttt gaatcgctgg cgcgactgga gcagatttta ggccagcatc
     5581 gttacctgac cggcaaccag ctaaccgaag ccgatattcg cctgtggact acgctggtgc
     5641 gttttgatcc agtgtatgtg acccacttca agtgtgataa gcaccgcatc agcgattacc
     5701 tgaatctgta tggcttcctg cgcgatatct accagatgcc ggggatcgcc gaaactgtca
     5761 atttcgatca catccgtaat cattacttcc gcagccataa gaccatcaac cctacgggga
     5821 ttatttcaat tggtccgtgg caggatctcg atgaaccgca tggacgagat gttcgcttcg
     5881 gttaaaaaaa ggcaccttac gaggtacctc tgataattag ctaagtgcat gttgttcatg
     5941 tcggatgcgg cgtgaacgcc ttatcaaacc tacacaacgt ttatattcaa tatgttaaaa
     6001 tgaccgcgta ggccagataa gcgtagcgca tctggcgatt ttgcgcttgt catcagtctt
     6061 agcgcacctt cacggcactt tattaattcc ttgaacgaat atttactgcc atttcattca
     6121 cgtctattct taatttgctg ctttaaaaac aagtgattga gcaaaattga ggcaaaaatg
     6181 gactggtatc tgaaagtact aaaaaattat gtcggtttcc ggggtcgtgc gcggcgcaaa
     6241 gagtactgga tgtttattct ggtcaacatc atctttacgt tcgtgctggg gctgctggat
     6301 aaaatgttag gctggcaacg cgccggtggc gaaggcatcc tgacgacaat ctacggtatt
     6361 ctggtgtttt taccgtggtg ggcggttcag ttccgccgcc tgcacgacac cgaccgctcg
     6421 gcgtggtggg cactgttgtt cttaatcccg tttatcggct ggcttattat catcgtcttt
     6481 aactgccagg cgggtacgcc aggcgaaaac cgctttggac cagatccgaa actggaacct
     6541 taaaacaaat ctgctcgccg gatgtctgac tcatccggct tttatcatca tgttgatgaa
     6601 tgaataattt actaatgttt atttaaaata tttcaatgtc gttatataaa ttacctataa
     6661 aaaacaacca tgtatttatc ttaaatatca aaacctttat aacatccgaa a
//
LOCUS       DAJVUN010000199         6684 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.199, whole genome shotgun sequence.
ACCESSION   DAJVUN010000199 DAJVUN010000000
VERSION     DAJVUN010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6684
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.199"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            198..938
                     /locus_tag="OQQ76_003541"
     CDS             198..938
                     /locus_tag="OQQ76_003541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HCS1969890.1"
                     /translation="MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPV
                     YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ
                     LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG
                     ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVN
                     GRYVVSKPLSHEVVQPQLASNYTLPEAK"
     gene            complement(909..1676)
                     /locus_tag="OQQ76_003542"
     CDS             complement(909..1676)
                     /locus_tag="OQQ76_003542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HCS1969891.1"
                     /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
                     GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN
                     WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA
                     SLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT
                     PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV"
     gene            complement(1882..2460)
                     /gene="lpcA"
                     /locus_tag="OQQ76_003543"
     CDS             complement(1882..2460)
                     /gene="lpcA"
                     /locus_tag="OQQ76_003543"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HCS1969892.1"
                     /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
                     GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS
                     RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
                     RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
     gene            2700..5144
                     /gene="fadE"
                     /locus_tag="OQQ76_003544"
     CDS             2700..5144
                     /gene="fadE"
                     /locus_tag="OQQ76_003544"
                     /EC_number="1.3.8.7"
                     /EC_number="1.3.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase FadE"
                     /protein_id="HCS1969893.1"
                     /translation="MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWS
                     AWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL
                     FQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK
                     EHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGT
                     DEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWN
                     KRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVP
                     FQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALA
                     TGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAI
                     VKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMI
                     FGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSST
                     PTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAV
                     LKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNHVVAGLLNVVIFPTGRH
                     YLAPSDKLDHKVAKILQVPNATRSRIGRGQYLMPSEHNPVGLLEEALVDVIAADPIHQ
                     RICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLRSINVDDFDPEELA
                     TKPVKLPEKVRKVEAA"
     gene            complement(5187..5633)
                     /gene="ivy"
                     /locus_tag="OQQ76_003545"
     CDS             complement(5187..5633)
                     /gene="ivy"
                     /locus_tag="OQQ76_003545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ivy family C-type lysozyme inhibitor"
                     /protein_id="HCS1969894.1"
                     /translation="MFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQG
                     HKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFS
                     TIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK"
     gene            5814..6584
                     /gene="yafV"
                     /locus_tag="OQQ76_003546"
     CDS             5814..6584
                     /gene="yafV"
                     /locus_tag="OQQ76_003546"
                     /EC_number="3.5.1.111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutaramate amidase"
                     /protein_id="HCS1969895.1"
                     /translation="MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMF
                     TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV
                     HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAI
                     YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA
                     TADAHQATRIDAELSMMALREYREKFPAWQDADEFRLR"
BASE COUNT         1543 a         1704 c         1820 g         1617 t
ORIGIN      
        1 tcttaggaaa taaatgatac atgcgctttt cggactattg aaaactgccc ctgtgctaaa
       61 tttgtaaacc ctgcgccgac aggcttgcgt aaaactcttt tggtgataat gtgagccttc
      121 caaatccaga ctattccgat ttgggatcca ttttgccgtc ctggcgtgtg taaccgtttt
      181 atcaaggaat aagcagtatg cgtaaaatcg cattaattct tgcgatgttg ttgatcccgt
      241 gcgtttcgtt tgccggtttg ctgggcagca gtagctcgac cacgccagtg agcaaagagt
      301 ataagcagca gttgatggga tcccctgtct acatccagat cttcaaggaa gaacgtacgc
      361 tcgatctcta cgtcaaaatg ggcgagcaat atcagctgct cgacagttat aaaatctgta
      421 aatattccgg cggcttaggg ccaaaacagc gtcagggcga tttcaaaagc ccggaagggt
      481 tttatagcgt ccagcgtaat cagttaaaac cagacagccg ttactacaaa gcgattaata
      541 ttggtttccc caatgcctat gaccgtgcgc atggttatga agggaaatac ctgatgatcc
      601 acggcgattg tgtttccatc ggctgctacg caatgaccaa tcagggtatt gatgagatct
      661 tccagttcgt tactggtgcg ctggtgtttg gtcagccgag cgtgcaagtg agtatttacc
      721 cgttccgcat gaccgacgcc aatatgaagc gccataaata ttccaacttt aaggacttct
      781 gggagcaact gaagccgggt tacgactact ttgagcaaac ccgtaagcca ccgaccgttt
      841 ctgtggtcaa tggtcgttac gtggtcagca agccgttaag ccacgaagtt gtgcagccac
      901 aactggcatc aaactacacg ctccccgagg caaaataagc gccattcgcc tggcataatc
      961 ttttgccagg tttcattgcc cgtcagcggc tgtgtcgcaa tcaccgtgac cacatcattc
     1021 ggtgtggtct gcgagctgaa gtcgatttct acatcctgat ccagcagcgt tgccacgcca
     1081 aacggtgcgc ggcgggtgat ccagtgcaga ttcgtcgagc aatacgccat tacatagcgc
     1141 ccatccgaaa gcagcatgtt gaaaacgccc ttctgccgca gttcgtccgc cagtgaagcg
     1201 atatatttaa acactgctgc catgttgccc ggcgtgcgcg ggtaacgctg cgttaattta
     1261 tgcagcagcc agcagaaggc tttttcgctg tcggtttcgc ctaccgggcg gaagttgccg
     1321 gtttccagtg atttgtagcc cgtcagttgt ccgttatggg cataagtcca gttacgcccc
     1381 cataactcgc gggtaaatgg gtgagtattt tccaacgcca cctcgccccg attagcctgg
     1441 cgaatatgag ccaccaccga acaagatttt atcgggtagt cctggacaag tttggcgatg
     1501 ggggaattaa agctgggttg tggatcttta aatgtgcgac agcctttacc ttcgtaaaag
     1561 gtaatgcccc agccatcttt atgtggcccg gttccaccac cacgctgtac aagtccggtg
     1621 aaactaaagc agatatcggt agggacgttg gcgctcatcc cgagcaattc gcacatgggt
     1681 aacctccaca acagcgggag cgcatggccc ccggcgaaga ttgatttaag aattttcagg
     1741 tcggatgcgg cgtaaacgaa ttattcggcc tacggttcgc gtacagattt gtaggcatga
     1801 taagacgcgt cagcatcgca tcaggcatca gcgcacaagt gccggatgcg gcgtaaacgc
     1861 cttatccggc ctacgccaga cttacttaac catctctttt tcaattaact ggatcaggat
     1921 atggatcact ttaatgtgaa tctcctgaat gcggtcggca taaccaaagt gcggtacgcg
     1981 aatttcgata tccgccgtgc cagccatttt gccgccgtct ttaccggtca gggtgatcac
     2041 tttcatcccc ttctcacgcg ccgctgcgat cgctttgatc acgtttgcag agttaccgga
     2101 ggtggagatc cccagcagta catcgccttc gcgacctacc gcttcaacgt agcgggagaa
     2161 aatatcattg aaaccgaaat cattaccgac gcaggaaata tgactaacgt cagaaatagc
     2221 aatcgccggg tagcccggac ggttttcacg gtagcgaccg gtcaactctt cggcaaagtg
     2281 catagcgtcg caatgggaac cgccgttgcc gcaggaaagc actttgccac cggctttaaa
     2341 gctgtctgct aacaggaccg ccgcgcgctg aatggcgtga atattggcgt catcttttaa
     2401 aaagttagcc agcgtttccg ccgcttcgtt cagttcgtta cgaataagat cctggtacat
     2461 gaggatatcc ttcagcataa atgtaataga caaaatgcag tgtaccggat accgccaaaa
     2521 gcgagaagta cgggcaggtg ctatgactag gactttttga cctgaagtgc ggataaaaac
     2581 agcaacaatg tgagctttgt tgtaattata ttgtaaacac attgctaaat gtatttacat
     2641 ccactacaac catatcatca caagtggtca gacctcctac aagtaagggg cttttcgtta
     2701 tgatgatttt gagtattctc gctacggttg tcctgctcgg cgcgttgttc tatcaccgcg
     2761 tgagcttatt tatcagcagt ctgattttgc tcgcctggac agccgccctc ggcgttgctg
     2821 gtctgtggtc ggcgtgggta ctggtgcctc tggccattat cctcgtgcca tttaactttg
     2881 cgcctatgcg taagtcgatg atttccgcgc cggtatttcg aggtttccgt aaggtgatgc
     2941 cgccgatgtc gcgcactgag aaagaagcga ttgatgcggg caccacctgg tgggagggcg
     3001 acttgttcca gggcaagccg gactggaaaa agctgcataa ctatccgcag ccgcgcctga
     3061 ccgccgaaga gcaagcgttt ctcgacggcc cggtagaaga agcctgccgg atggcgaatg
     3121 atttccagat tactcatgag ctggcggatc tgccgccgga gttgtgggcg taccttaaag
     3181 agcatcgctt cttcgcgatg attatcaaaa aagagtacgg cggactggag ttctcagctt
     3241 atgcccagtc tcgcgtgctg caaaaactct ccggcgtgag cgggatcctg gcgattaccg
     3301 tcggcgtgcc gaactcatta ggcccgggcg agctgctgca acattacggc actgacgagc
     3361 agaaagatca ctatctgccg cgtctggcgc gtggtcagga gatcccttgc tttgcactga
     3421 caagcccgga agcgggttcc gatgcgggcg cgattccgga caccgggatt gtctgcatgg
     3481 gcgaatggca gggccagcag gtgctgggga tgcgtctgac ctggaacaaa cgctatatta
     3541 cgctggcacc gattgcgact gtgcttgggc tggcgtttaa actctccgac ccggaaaagc
     3601 tgctgggtgg cgcagaagat ttaggtatta cctgtgcgct gatcccgacc accacgccgg
     3661 gcgtggaaat tggtcgtcgc cacttcccgc tgaacgtacc gttccagaac ggaccgacgc
     3721 gcggtaaaga tgtcttcgta ccgatcgatt acatcatcgg tgggccgaaa atggccgggc
     3781 aaggctggcg gatgctggtg gagtgcctct cggtaggccg cggcatcacc ctgccttcca
     3841 actcaaccgg cggcgtgaaa tcggtagcgc tggcaacggg cgcgtatgct cacattcgcc
     3901 gtcagttcaa aatctctatc ggtaagatgg aagggattga agagccgctg gcgcgtattg
     3961 ccggtaatgc ctacgtgatg gatgctgcgg catcgctgat tacctacggc attatgctcg
     4021 gcgaaaaacc tgccgtgctg tcggctatcg ttaagtatca ctgtacccac cgcgggcagc
     4081 agtcgattat tgatgcgatg gatatcactg gtggcaaagg cattatgctc gggcaaagca
     4141 acttcctggc gcgtgcttac cagggcgcac cgattgccat caccgttgaa ggggctaaca
     4201 ttctgacccg cagcatgatg atcttcggac aaggagcgat tcgttgccat ccgtacgtgc
     4261 tggaagagat ggaagcggcg aagaacaatg acgtcaacgc gttcgataaa ctgttgttca
     4321 aacatatcgg tcacgtcggt agcaacaaag ttcgcagctt ctggctgggc ctgacgcgcg
     4381 gtttaaccag cagcacgcca accggcgatg ccactaaacg ctactatcag cacctgaacc
     4441 gcctgagcgc caacctcgcc ctgctttctg atgtctcgat ggcagtgctg ggcggcagcc
     4501 tgaaacgtcg cgagcgcatc tcggcccgtc tgggggatat tttaagccag ctctacctcg
     4561 cctctgccgt gctgaagcgt tatgacgacg aaggccgtaa tgaagccgac ctgccgctgg
     4621 tgcactgggg cgtacaagat gcgctgtatc aggctgaaca ggcgatggat gatttactgc
     4681 aaaacttccc gaaccacgtg gttgccgggc tgctgaatgt ggtgatcttc ccgaccggac
     4741 gtcattatct ggcaccttct gacaagctgg atcataaagt ggcgaagatt ttacaagtgc
     4801 cgaacgccac ccgttcccgc attggtcgcg gtcagtacct gatgccgagc gagcataatc
     4861 cggttggctt gctggaagag gcgctggtgg atgtgattgc cgccgaccca attcatcagc
     4921 ggatctgtaa agagctgggt aaaaacctgc cgtttacccg tctggatgaa ctggcgcaca
     4981 acgcgctggc gaaggggctg attgataaag atgaagccgc tattctggtg aaagctgaag
     5041 aaagccgtct gcgcagtatt aacgttgatg actttgatcc ggaagagctg gcgacgaagc
     5101 cggtaaagtt gccggagaaa gtgcggaaag ttgaagccgc gtaattgaat aacggagccg
     5161 aaaggctccg tttctttatc cgctaattat ttaaaattaa agccatccgg atggttttcc
     5221 aggctgccgg tcaacgccgc gaacagcacc gttttaccat caatcgaaag cgcatcgttc
     5281 acattcagcc aggtgagttt ctcttgcgac gttttctcat caatagtcga gaacagcccc
     5341 gtcatctgat tagatttctc ggaccacatc acagcgatac gttgcgagcc acagtcatgc
     5401 ggtttgcacg cgctcatcac ctgatacgtc tcatctccca acgttacggt ttgtgcggga
     5461 gtataagtac cgcctttcat cacccaggca ggcagcttat gcccttgtac catctgatta
     5521 aatgcagctt tggtggtttc gccctttgca aggctgctaa tggttaaatc atcctgcgcc
     5581 attgcactgg tggcgatgac cagagcggcg actgtcgtta ttgccttaaa catcattcct
     5641 cccgagctta tcctgcccat gttattaacc ttctaaagcc tagcgataac acgataattt
     5701 gcaaatcaga tatttccaat atcagcattt gttatcaatt tattctgcgc taaggcaact
     5761 gcctgataag gtgttaaagt tataaaaccc ttcgcataaa ggagttgtac accgtgcctg
     5821 gtttgaagat tacgcttttg cagcaaccac tggtgtggat ggatggccct gccaacctgc
     5881 gtcattttga tcgtcaactg gaaggtatta ccgggcgcga tgtgatcgtt ctaccggaga
     5941 tgtttaccag cggctttgcc atggaagcgg cagcttcgtc gctagcacaa gatgacgtag
     6001 tgaactggat gacagctaag gcgcagcagt gcaatgcgct gattgcaggc agtgttgcat
     6061 tacaaacgga gtctggttcg gttaaccgct ttttgctggt tgagccgggc ggcacggtac
     6121 atttttatga taagcgtcat ctgttccgca tggcagatga gcatctacat tataaagcgg
     6181 gcaatgcgcg agtgattgtg gaatggcgcg gctggcgtat tttgccgttg gtgtgctacg
     6241 acttacgttt tccggtgtgg tcgcgcaatc tcaacgatta tgacctcgcc atctacgttg
     6301 ccaactggcc tgctccgcgc tctctgcact ggcaggcatt gctgacggcc cgcgcgattg
     6361 agaatcaggc gtatgtggcg ggatgcaatc gcgtcggcag cgatggcaac ggctgccatt
     6421 atcgcggtga cagccgggtg attaatccac aaggcgagat tatcgctact gccgacgcgc
     6481 atcaggcaac gcgcattgat gcggagctgt cgatgatggc attgcgggaa tatagagaaa
     6541 agtttccggc atggcaggat gcggatgagt ttaggttgcg gtgagtgggg gttgtgttta
     6601 aggctggggg agagtcgggg taagactacg aaagcccgct ctccgcaagg actgacgcca
     6661 gatagtttct gtccatagct gctt
//
LOCUS       DAJVUN010000200         6639 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.200, whole genome shotgun sequence.
ACCESSION   DAJVUN010000200 DAJVUN010000000
VERSION     DAJVUN010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6639
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.200"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..788
                     /locus_tag="OQQ76_003547"
     CDS             <1..788
                     /locus_tag="OQQ76_003547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HCS1969896.1"
                     /translation="TLQIIAIFLFSCIAGMGSVLDEFQTHRPLIACTVIGLILGDLKT
                     GIILGGTLELIALGWMNVGAAQSPDSALASIISAILVIVGQQSIATGIAIALPVAAAG
                     QVLTVFARTITVVFQHAADKAAEEARFRTLDILHVSAFGVQALRVAIPALIVSLFVSA
                     DMVSNMLSAIPEFVTRGLQIAGGFIVVVGYAMVLRMMGVKYLMPFFFLGFLAGGYLDL
                     SLLAFGGVGVIMALVYIQLNPQWRKAEPQLQATASTALDQLDD"
     gene            799..1620
                     /locus_tag="OQQ76_003548"
                     /pseudo
     CDS             799..1620
                     /locus_tag="OQQ76_003548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709807.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
     gene            1675..2904
                     /gene="sorE"
                     /locus_tag="OQQ76_003549"
     CDS             1675..2904
                     /gene="sorE"
                     /locus_tag="OQQ76_003549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-sorbose 1-phosphate reductase"
                     /protein_id="HCS1969897.1"
                     /translation="MKTTALRLYGKRDLRLETFDLPEMQEDEILATVVTDSLCLSSWK
                     EANLGENHKKVPDDVATPPIIIGHEFCGDILAVGKKWQHKFQPGQRYVIQANLQLPDR
                     PDCPGYSFPWVGGEATHVVIPNEVMEQDCLLAYDGETYFEGSLVEPLSCVIGAFNANY
                     HLQEGSYNHTMGIRPQGRMLILGGTGPMGLLAIDYALHGPVNPSQLVITDTDNDKLSY
                     ARKHYPSEPQTLIHYLNAADAAFDTLMALSGGHGFDDIFVFVPNEGLVTLASSLLATD
                     GCLNFFAGPQDKHFSAPINFYDVHYAFTHYVGTSGGNTDDMRAAVKLIEEKKVQAAKV
                     VTHILGLNAAGETTLELPAVGGGKKLVYTGKYLPLTSLTQIQDQALAAILARHQGIWS
                     GEAEQYLLTHAEAISHD"
     gene            3287..3976
                     /gene="pepE"
                     /locus_tag="OQQ76_003550"
     CDS             3287..3976
                     /gene="pepE"
                     /locus_tag="OQQ76_003550"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HCS1969898.1"
                     /translation="MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQ
                     TWDDYTAKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGL
                     LAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTN
                     ALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGE
                     EAVPLEAGHRF"
     gene            complement(4067..5698)
                     /locus_tag="OQQ76_003551"
     CDS             complement(4067..5698)
                     /locus_tag="OQQ76_003551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HCS1969899.1"
                     /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK
                     PLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTF
                     DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV
                     QVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANL
                     GSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVI
                     YFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALAN
                     AARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEE
                     LAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARWAFSLDGLKELDALYEQ
                     LLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRSYSHAHVDRLHQQNVQSIETSSL
                     HLGLLGDMQRLNSLFCSVAYSVLEQSDEDEGWDEY"
     gene            complement(5918..>6639)
                     /gene="metH"
                     /locus_tag="OQQ76_003552"
     CDS             complement(5918..>6639)
                     /gene="metH"
                     /locus_tag="OQQ76_003552"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312964.1"
                     /note="one of two methionine synthases in Escherichia
                     coli; MetH catalyzes a methyl transfer reaction from
                     methyltetrahydrofolate to homocysteine to create
                     methionine; requires zinc for activity; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HCS1969900.1"
                     /translation="AEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQ
                     TEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKA
                     LADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHTEK
                     ATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARR
                     KGMSVSDVERWLAPNLGYDAD"
BASE COUNT         1497 a         1796 c         1782 g         1564 t
ORIGIN      
        1 gtaccctaca aatcattgct atatttcttt tttcctgtat tgccggaatg ggcagcgtgc
       61 tggatgaatt tcagactcat cgcccgttaa ttgcctgtac ggtgattggt ttaattctcg
      121 gtgatttaaa aaccggaata atactcggtg gtacgctgga attgatagct ctcggctgga
      181 tgaacgtcgg cgcggcgcaa tctccggatt ctgcactcgc cagcataatc tccgccattc
      241 tggttatcgt tggtcagcaa agcatcgcca ccggaatcgc catcgcgttg cctgtggctg
      301 cggcaggcca ggtgctgact gtgtttgccc gtaccatcac cgtagtgttc cagcacgcgg
      361 cggataaagc agcggaagaa gcacggtttc gcactctcga tattctgcat gtctccgcgt
      421 ttggcgtgca ggcgctgcgc gttgctattc cggcactgat tgtctcactg ttcgtcagcg
      481 ccgatatggt gagcaatatg ctgagcgcga taccggaatt cgtgacgcgc ggtctgcaaa
      541 ttgctggcgg ttttatcgtg gtggtcggtt acgccatggt gctacgtatg atgggcgtga
      601 aatatttgat gcctttcttt ttcctcggtt tcctcgcagg tggctacctc gatctcagtc
      661 tgctggcgtt cggtggcgtc ggcgtgatca tggccctggt ctacatccag ctaaatccac
      721 agtggcgtaa agctgaacct caactccagg ccaccgcctc caccgccctt gaccaacttg
      781 acgattaacg gagccatcat ggaacagaga aaaattacac gcagcgatct ggtgagcatg
      841 tttctgcgct ccaacctgca acaggcgtcc tttaactttg aacgtattca cgggctgggt
      901 ttttgctacg acatgatccc cgccatcaaa cgactttacc cattaaaaga ggatcaggtt
      961 gcggcgctca ggcgacacct ggtgttcttc aataccacgc cagccgtatg tggcccggtc
     1021 atcggcgtca ctgccgccat ggaagaggcg cgggccaacg gcgcggaaat tgatgacggt
     1081 accattaacg gcatcaaagt cggtctgatg ggaccattgg caggagttgg cgatccactg
     1141 gtctggggaa cgctgcgccc gattaccacc gcgctcggcg catctctggc actttcgggc
     1201 aacattctcg gcccgctgct gttcttcttt attttcaatg cggtgcgtct ggcgatgaag
     1261 tggtatggcc tacagctcgg ctttcgcaaa ggggtgaata tcgtcagcga tatgggcggg
     1321 aatgtgctgc aaaaactcac cgaaggcgcg tcgattctcg ggctgtttgt gatgggcgtg
     1381 ctggtcacca aatggacgtc aatcaacgta ccgttggtgg tttcacaaac gcatgccgcc
     1441 gatggctcca ccgtcaccat gaccgtgcag aacattctcg accaactttg ccctggtttg
     1501 ctggcgctcg gtctgacgct gcttatggtt cgtctgctca acaaaaaaat taacccggta
     1561 tggctgattt tcgccctgtt tggcttaggg attatcggta atgcgctggg cttcctgtcc
     1621 agattcttcg ccccggcacg actgccgggg ccatcgctca acatgaggtg gtttatgaaa
     1681 acaacagctc tgcgtcttta tggtaaacgt gatttacgcc tggaaacctt tgaccttcct
     1741 gaaatgcagg aggatgaaat cctcgcgacg gtggtcactg acagcctgtg cctctcttcc
     1801 tggaaagagg ccaatctggg tgaaaaccat aaaaaagtac ccgacgatgt ggcgaccccc
     1861 cccatcatca tcggccacga gttttgcggc gatattctgg ccgtgggtaa aaagtggcag
     1921 cacaaattcc agccgggtca gcgttatgtg attcaggcca acctgcaact ccccgaccgc
     1981 ccggactgcc ccggctactc cttcccgtgg gtgggcggcg aagccacgca tgtggttatt
     2041 cccaacgagg tcatggaaca agattgcctg ctggcatacg acggcgaaac ctattttgaa
     2101 ggctcactgg ttgaaccgct ttcctgcgtg attggcgcgt tcaacgccaa ctatcatctt
     2161 caggaaggta gttataacca cacgatgggg attcgcccgc aagggcgcat gctgatcctc
     2221 ggcggcaccg gaccaatggg actgttggcg attgattatg cgctacatgg acccgttaac
     2281 ccgtcgcagc tcgtcattac cgataccgac aacgataaat tgagttatgc gcgcaagcac
     2341 tatccatcag aaccgcaaac actgattcat tatctcaatg ccgccgatgc agcatttgat
     2401 acgctaatgg cgctgagtgg cggtcacggc ttcgatgata ttttcgtctt tgtgcctaat
     2461 gaaggactgg tgactctcgc ctcttccttg ctggcgacag atggttgcct gaatttcttc
     2521 gccggaccgc aggataaaca tttcagcgcg ccaattaatt tctacgatgt gcattatgca
     2581 tttacccact acgtgggcac gtcaggcggc aataccgacg acatgcgcgc ggcggtcaaa
     2641 ctgattgaag agaaaaaagt gcaggccgca aaagtggtaa cacatattct tgggctgaat
     2701 gccgcgggcg aaaccacgct tgaattgcct gccgtcggcg gcggcaaaaa gctggtgtat
     2761 accgggaaat acctgccgct gacgtcactc acgcagattc aggatcaagc actggcggcg
     2821 attctggcgc gtcatcaggg gatctggtcc ggtgaggcgg agcaatatct gctcactcat
     2881 gcagaggcaa tttcccatga ttaatcgcgc tacttaactc tgcatgtcgc tggctggtcg
     2941 ccgcggcaac ttcgcgacct gatgtgcggc tgattgctga agcggcccaa tgtgcacgag
     3001 aaggataaaa aaacatcagc gccttaaggg gcgctcaaat tggtggcaaa gtacacattg
     3061 tttatgccgg atgcggaata aagctttatt cggcctacat aatctcgaaa attcaatata
     3121 ttgcagttat ctggtaggtc tggtaagcgt agcgcatcag gcaatgctgt gtttgtcatc
     3181 agtctcagct cccgatgcaa tacgggacat cgtgagccat gtcagtaagt ggttaaattc
     3241 gcagtggtag catgccttcc gtgatttctt actaaccgga gaagtaatgg aactgctttt
     3301 attgagtaac tcgacgctgc cgggtaaagc ctggctggaa catgcactgc cgctaattgc
     3361 tgaacagttg cagggtcgcc gctcagcggt gtttatccct ttcgctggcg taacgcagac
     3421 ctgggatgat tacacagcga aaacggctgc ggttctcgct ccgctgggtg tttctgtcac
     3481 cggtattcat agcgttgtcg atcccgttgc cgcgattgaa aatgctgaga tcgtgattgt
     3541 cggcggcggg aatactttcc agttgctgaa acagtgccgc gagcgcgggc tgctggcacc
     3601 aattactgac gtggttaaac gtggtgcgct gtatattggc tggagcgcag gcgctaacct
     3661 tgcttgccca accattcgta ccaccaacga tatgccgatt gtcgatccgc aaggtttcga
     3721 tgcgctaaat ctgttcccgt tgcaaatcaa cccgcacttc accaacgcgc tgccggaagg
     3781 ccataaaggt gaaacccgtg agcagcgtat tcgcgaactg ctggtcgtcg cgccagaact
     3841 gacgattatt ggtctaccgg aaggtaactg gatcacagtg agtaaaggtc acgctacgct
     3901 gggtggcccg aacaccacct atgtgtttaa ggccggtgaa gaagcggttc cgctggaagc
     3961 tggtcaccgt ttttaagtga attgccggat gcatgatccg gcatcttgtt catagtgcct
     4021 gatgcgacgc ttgacgcgtc ttatcaggcc tacaggattc acaatattaa tactcgtccc
     4081 atccttcatc ttcatccgac tgttccagca cactgtaagc caccgaacaa aacagcgagt
     4141 tcaggcgctg catatctccc agtaagccta aatgtagcga actggtttca atgctctgca
     4201 cgttttgctg atgcaggcga tcgacgtggg cgtgggaata gctgcgatta agaatgcgaa
     4261 agcgatgctt actacggcgc aaacgacgag cgctggtgac atcgccagag aagaacaccg
     4321 acattgccag ctttaaatta ctgagcaatt gctcatagag cgcatccagt tccttcaacc
     4381 catcaagcga aaatgcccac cgtgctgcca gtgatttgtc agcaatttcg ctgcccatgc
     4441 gctcgacgat atcggaggcc tgttcaaggt tgagcgacat ttcaataatc tccgcccagc
     4501 ggcgcgactc ttcctccgcc agctcttctt ttggcatccg cgccagatac agcttaatgg
     4561 cggtgtagag aacgttgata tcatctgcca gcttacgcag ctctttctcc tgccgtggct
     4621 caccgtgcat cactttattc aacccttcca tcatctgttc catggcgtcg ccaatgcgca
     4681 gggtttcgcg cgcggcgttc gccagagcaa gcgtgggcgt atccagcgcg ctgacatcca
     4741 gatgtttagg ccgtagctgg gtatccagtt ccggttcatc gcgaataatc gttttgcaaa
     4801 accgtgccat cgggtcaaca aatggcagca tgaccaggca acgtacaagg ttgtagaaga
     4861 cgtggaaata gatcaccagt tccgcttttg gcaatgacag cttccccatt gtctctgcca
     4921 gcaaatggac aaacggcagg ataatcaggc tacccaccag cttaaacagc agactaccca
     4981 gcgcgacacg gcgggctgcg gcattggcgg cactgttgtt gagcatcgcc agcaggccgg
     5041 aaccgaggtt agcaccaatc accagacaga gcgccacggg gaaggagata atgcctgcgg
     5101 cggtcagagt cgcggtcagc agtacagcag caaggctgga gtagctgata atggcgaaca
     5161 tcgcgccaat cagcgcatcc agcagaatat cgccggtcag cgaggcaaag atcacctgaa
     5221 cgccgtttgc ctgggtgatc ggcgttacgg cctgcacaat caactccagc gccagcaaaa
     5281 tcagcccaag accaataccg acgcggccca gttgcccggc gcgtgactgt ttgcgtccga
     5341 ggaaaaaaat cacgccgata aaaataagta acggtgacag ccaggataag tcgaaggtga
     5401 gaatacgcgc cattagcgcc gtcccgacat ctgcccccag cacaatgacc agagccggtg
     5461 cgagggctac cagatcctga gcgacgaacg aggtcaccag catggtggtg gcattactgc
     5521 tctgtaccag tgcggtaacg ccgatccccg cgcaaaaggc gagcggcttt ttttcgacgc
     5581 tccggctaag gacagtacgc aaacgcgcgc cgaagacgcg cattacgccg gttcgaacaa
     5641 tatgagtccc ccagaccagc agggcgacgg cagaaagcag gtgaagcagc gttaacacga
     5701 gttcaggttc tccttatcgt tatatgttcc tgaagcaatt gaatgaccaa agaaccggaa
     5761 acacgctgac tggcatcttt actgtgcctt ttgacattcg tttttccggc taagattatt
     5821 ccagcctgat tccagtataa gtgtttcata ttaataaaga gacagggcac tcattgagcg
     5881 ccctgtttgt tgtaaggaaa agtgacagat ttgtgaatca gtccgcgtca taccccagat
     5941 tcggtgccag ccagcgctca acatctgaga cgctcatacc tttacggcgg gcatagtctt
     6001 caacctgatc gcgctgaatt tgcgccacgg cgtagtactt gctgtccggg tggctgaaat
     6061 accaacccga aaccgatgca ccgggccaca tggcgaaaga ttctgtgagt ttcatgccgg
     6121 tatgtttttc cacttccagc agctcccaga tggtggcttt ttccgtatgt tccgggcagg
     6181 ccgggtagcc cggtgccgga cggatgccct ggtagttttc gcggatcagt tcttcgttgc
     6241 tgaggttctc gttcggcgca tagccccagt agactttacg cacacgctca tggagatact
     6301 ccgcaaaggc ttcggctaaa cggtcggcaa gcgctttcac catgattttg ttgtaatcat
     6361 cgtgctgcgc ttcaaaggca tcagccagtg cgtcctcttc cagcccgcca gtcacggcaa
     6421 atgcgccgat gtaatctgct ttaccagaaa gcttcggcgc aacgaagtca gcgagacagt
     6481 agttagcgaa tcccgttttt tcggtctgtt gacgcagatg gtggctgaca ttgatcacat
     6541 gggtgcgcgt ttcgtcacgg tagatttcaa tgtcatcgcc cacacggttt gccgggaaca
     6601 ggcccaccac gccacgcgga ttcagcgttt tctcggcgc
//
LOCUS       DAJVUN010000201         6620 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.201, whole genome shotgun sequence.
ACCESSION   DAJVUN010000201 DAJVUN010000000
VERSION     DAJVUN010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6620
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.201"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..722)
                     /locus_tag="OQQ76_003553"
     CDS             complement(<1..722)
                     /locus_tag="OQQ76_003553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HCS1969901.1"
                     /translation="MTLSFVTRWRDELPETYTALSPTPLNNARLVWHNTELANTLSIP
                     SSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTM
                     DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
                     TAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLEDDEDKYRLW
                     FSDVVARTASLIAQWQTVGFAHG"
     gene            complement(785..1498)
                     /gene="ydiV"
                     /locus_tag="OQQ76_003554"
     CDS             complement(785..1498)
                     /gene="ydiV"
                     /locus_tag="OQQ76_003554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-FlhDC factor"
                     /protein_id="HCS1969902.1"
                     /translation="MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIP
                     TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAG
                     ELLKYPFIELLINEYYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFT
                     RVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHAL
                     QGCLWPAVPINQITTLVQR"
     gene            complement(1745..2209)
                     /locus_tag="OQQ76_003555"
     CDS             complement(1745..2209)
                     /locus_tag="OQQ76_003555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1969903.1"
                     /translation="MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS
                     WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDL
                     VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI"
     gene            complement(2287..3036)
                     /gene="btuD"
                     /locus_tag="OQQ76_003556"
     CDS             complement(2287..3036)
                     /gene="btuD"
                     /locus_tag="OQQ76_003556"
                     /EC_number="7.6.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter ATP-binding protein
                     BtuD"
                     /protein_id="HCS1969904.1"
                     /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA
                     RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKT
                     RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP
                     MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE
                     EVLTPPNLAQAYGMNFRRLDIEGHRMLILTI"
     gene            complement(3036..3587)
                     /gene="btuE"
                     /locus_tag="OQQ76_003557"
     CDS             complement(3036..3587)
                     /gene="btuE"
                     /locus_tag="OQQ76_003557"
                     /EC_number="1.11.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional thioredoxin/glutathione peroxidase"
                     /protein_id="HCS1969905.1"
                     /translation="MQDSILTTVVKDIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYE
                     QLENIQKAWADRGFVVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGE
                     GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGLVIQ
                     RFSPDMTPEDPIVMESIKLALAK"
     gene            complement(3650..4630)
                     /gene="btuC"
                     /locus_tag="OQQ76_003558"
     CDS             complement(3650..4630)
                     /gene="btuC"
                     /locus_tag="OQQ76_003558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter permease BtuC"
                     /protein_id="HCS1969906.1"
                     /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISLGDWF
                     TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI
                     AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM
                     TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE
                     ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL
                     PGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKARR"
     gene            complement(4839..5168)
                     /locus_tag="OQQ76_003559"
     CDS             complement(4839..5168)
                     /locus_tag="OQQ76_003559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000997174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969907.1"
                     /translation="MNDDLERRVSCLESDVTEIKNNLITLTTRSESFATKSDVLEIRE
                     GLRLEMAESRQSLKSEMADLRQSLKVEMAEHRTELQKSFANQTWLLTGIVLSAMAVLV
                     AVVTVIK"
     gene            complement(5276..5638)
                     /locus_tag="OQQ76_003560"
     CDS             complement(5276..5638)
                     /locus_tag="OQQ76_003560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969908.1"
                     /translation="MKFHLDELKRMATLDNFARFLNESSTNEKCLSCGDTDMYMYLTN
                     IVEVGPEPKTAEECDLGTFVMLDYIGPFTGYPGYEGHDRENIHNYEFRLTCNRCGFVH
                     RYSARAFMNWVGKQGDEK"
     gene            complement(5641..6579)
                     /locus_tag="OQQ76_003561"
     CDS             complement(5641..6579)
                     /locus_tag="OQQ76_003561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1969909.1"
                     /translation="MCPEGRKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDR
                     RPLSVLIDLWWKYHGQLMKSGHNTRLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQ
                     GIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVKEREMGYLSKSECVQLL
                     DALAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESL
                     FEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILT
                     LQKILGHAKIQTTMIYAHLAPDYLQDAVRFNPLGGA"
BASE COUNT         1758 a         1760 c         1479 g         1623 t
ORIGIN      
        1 ccatgtgcaa agccgaccgt ctgccattgg gcaattaacg acgcggtacg tgcgacaaca
       61 tcgctaaacc agagacggta tttgtcctca tcatcttcaa gatgtgacca gtaatgacga
      121 atagcaaagt cagctaactg acgaaccttt tccgactcgc ggcggtagta aaaatgttcg
      181 aaatgaccaa agcgcagatg acttggtgcc acacgcatca gcatcgcgcc tggctccgcc
      241 gtttcccgat acactggcga atcgctggtg acgatactta acgcgcgggt cgtcggaatg
      301 cccagataat gcatcgcctc actggcgaga ctttctcgta tcgtcgaacg taaaaccgcc
      361 cgtccatcac ccattcgcga ataaggcgtc aggccagcac ctttcagatg ccagtccatt
      421 gtagtgccat cagcaagcag ttgttcgccg agtaaaatgc cgcgcccatc acccagttgg
      481 cccgcccaga cgccgaactg atgaccactg taaacctgcg ccagtggtga cataccaggc
      541 agtagggctt cgccgcccca gacacctgcg ccatttttaa acagcgacga tggaatactc
      601 agcgtgttag ccagttcggt attatgccaa accagccggg cattatttaa aggcgtaggg
      661 gaaagtgctg tataggtttc tggcaattca tcgcgccagc gggtaacaaa agacagggtc
      721 atagatcctc ctgtttgata gtgtagacgg ttactctcgt cttaaacacc agcaaacaga
      781 agggttatcg ctgaaccaac gtcgttatct gatttatggg aacggcaggc cacaggcatc
      841 cctggagagc atggaaatcg aagggggtaa tctgtgccaa tatttctgcc gtatcaatgc
      901 ctcccgcaat gatgcaattg caacaagggg aaatttgcgc ctggatcgca cgaataaacg
      961 gttcgaagga gcggtgcgtg atttgttgct gaataaaact tttatccagc atgacgcggg
     1021 tgaaaagacc atcaaaaacc gctttcattg tgctattgcc tgctcccaaa ttacctaaca
     1081 caaggggata cacttgcgat aaggataaaa gaccgcggtt atcttttcct tcattgagat
     1141 gcgggtaata ctcattaatc aacagttcaa taaacggata ttttaatagt tcgcctgcgt
     1201 aattatccct ctctaataat aatgtagcca cttgtggcgt taaattaagc caggcaaaga
     1261 gtttatgttg aataaaaaaa tgttggcatg attttagtaa ttccaactgc tctgaaaata
     1321 attgccaatg ttgctcctcg gtaagttgcg ctataacccg actcgtcggg atacgcaccg
     1381 tgccatcttc actggagaaa tgggtaatta actcaacgcc gacaaggact tgctggttat
     1441 ctcttatcgg caggaaatag caatcagaat gataaagatt ctccaaaaaa atcttcatgg
     1501 taaccgtccc tctcgaagga tgtttttcag tatccggcta aaagggatga ggccataaga
     1561 cataacaatt acagaaggag taactttcat ttgttccatg ttaaccactt tttcaggggt
     1621 ccttttttta gattatcctg attataaacg aataatccat ttacggaatt tttgtctgca
     1681 aaatactact gtattcagga gtaaatggac ggcgatgtat catcgccgtc catttttcga
     1741 catactagat tcgtctcgcc tgccagaaat ttttctgcca atagacatta tcaagtgagg
     1801 aacgcatcac tcccttgctg gtagaggcgt ggataaattg gttgttggta tcgtaaatac
     1861 ctacatgcaa accattttgt ccggaccccg ttttgaaaaa gaccaggtca cctggcagca
     1921 acttgtcttt atcaatttgc gtgccaatag aggcttgttg tttggtttca cggggcagct
     1981 gcaaatcgaa acgatcgcgc atcgtcacaa ccacaaatcc cgaacagtcc acaccgcgcc
     2041 gcgtcatgcc accataacga tacggcgtgc catgccagct ttgtagctgg tcgttcaaac
     2101 cggcaataac ggtaatcgaa tcagaaagtc tggcatttgg cggcggtgct ttatggtggc
     2161 tacacccggc cagaaacagt gctgtgatca aaataaggca gaaacgcatt ccgtacggtt
     2221 cctctgtttt ttattcttgc attaatttag cgtcgtaatt acccgatttt caagatacta
     2281 atgaaatcag atggtcaaaa tcagcattct gtgaccttcg atatccagac ggcgaaaatt
     2341 catcccatag gcctgcgcca gatttggcgg cgtgagcacc tcttctctgc gtccactggc
     2401 cagcattttt ccacctttta gcaaccacgc ccgatgcgca tgacgcaacg tgtggttgag
     2461 atcgtgactg ctcatcacaa tcgccagtcc ttgctgacac agcgcgctca gaattttgtc
     2521 taacgcactt tgttgcgcaa catcaagact gttcatcggc tcatcaagaa gcagcaattg
     2581 gcctgcggga ttggcttgtg gtgtgatttg caacaccacc gcagcaagac gtacgcgttg
     2641 ccattcaccg ccggaaagtt gattggtgct acgaccgagt ttgtcatcaa gagccagcgc
     2701 ccctgcgaca tcattcagta gttcggtacg cgttttatcg tgctgatgca gtgtcaggta
     2761 gtgccagacc ggcattgcaa acggcggcgt ctgctgttgt gaaagatagg cgcgatgcag
     2821 cgcgagtttt gttgcggacc atgcttccag gggttgcccc gcgaactgaa tgcttccctt
     2881 accgctggtc attccggcca ttcgtgcaag caaggtactc ttacccgcgc cattcggccc
     2941 caccaggtgc aggatctccc cagcccgaac ctcgccagaa agtggcccca ggcgggtaga
     3001 ttccgcaaca tcctgtaact gcatcacaat agacattatt ttgccaacgc cagtttaatg
     3061 ctttccatca caatggggtc ttccggcgtc atatccgggg aaaaacgctg gatgaccaat
     3121 ccgtccctgc caactaaaaa tttctcaaaa ttccataaaa tatcatcagg gtacagcggt
     3181 gcacgacctt tgctgaccat acgggcatag aatccgctct cttccggcgc gactgcggtc
     3241 ggcgctgcgg caatcaattt ttgatacagc ggatggcgtc cttcgccgtt aacttcaatc
     3301 ttactgaaca tcgggaacgt caccccccat gtggtggtac agtaagtttt aatctcttca
     3361 tcgctgcccg gttcttgttc cagaaactgg ttgcacggga atcccagcac cacaaaacct
     3421 cgatcggccc aggctttctg aatattctcc aactgctcat attgcggcgt taagccacac
     3481 tttgaggcga cattgacaat caacagcaca ttaccggcgt acttctccag cgtggtcact
     3541 tcaccgtcga tatctttcac tacggtcgtc agaatggaat cttgcatcgt ttctcctggg
     3601 tgtggtcagt aaaaatctta gcttttaatc atagaccgtc tttttgcggc taacgtcttg
     3661 cttttaacaa taaccagata aacaccggcg cacccaacgt tgcggtgacc acgccaatag
     3721 gcagctctgc ggcagctaat gccaggcgcg ctacaatatc ggccagcagc aatgcgctcg
     3781 cccctgccag cgcgcagccg ggaagtaata cgcgatgatc ggttaaacca cacaaccgaa
     3841 gaatatgtgg gatcaccaga ccaataaagc cgatagcacc cgccagcgcc acactgacgc
     3901 caaccatcca gccggtcgcg gccaccagca cattgcgcca gaaccacagg ggtaaaccca
     3961 gttgccgcgc cgagatctcg ccaagtgcta acatattcat cggcctggac tgacaacaga
     4021 tccacaacaa cacggggatc aatgccagca tcagccagct ttgccgccag tctacgccgc
     4081 caaaaccgcc catcatccag tacatcagct gacgtaaatc aacagaggtg gaaaagtaga
     4141 tagcccacgt cattagtgcg ctacagataa tccctaatgc aacgccagcc agcaataacc
     4201 gactggtcga aagatgacga cgggcgaaac gtaagagtat taaagtgatg ataagcgcgc
     4261 cagcaatcgc acacagccct agcgcccagt tggggagttg cccttgccca agcaataccg
     4321 cggcgataag ccccacgcct gcgccgttag agaccccaag tagtccaggt tctgccagag
     4381 gattttcaaa caacgcctgc attacagcgc cggatatagc cagcgccgca ccaaccagca
     4441 atacagccag cgtacgtggc aggcgaattt gccagacgaa cagttcgcca cgaggagtaa
     4501 accagtcacc tagcgagatc cattgttcac cggcgcaaag gcttaagaga agcgccagca
     4561 gcatcaaaac tgacaggcat aataaccagc gaatattttg tcgctgttgt tggcgggcaa
     4621 gtgtcagcat ggtatccgtt ctgctgaagt gtcatggcgt tgattttacg gtgactcttc
     4681 gacagtgaaa agaaaaaagg ccgcagagcg gccataaaca caagtaaaaa tcaacaagtt
     4741 agataattat caaagactta cagacacaca aaaacacagc caaccacaac aaataacagg
     4801 gatgtggtca ctttgtggat catatcgccg ccataaattt acttaataac agtaaccaca
     4861 gccacaagca cggccatcgc agacaggaca atacctgtga gtaaccaagt ctgatttgca
     4921 aatgatttct gaagttcagt acgatgctca gccatctcaa ctttcagaga ctggcgtaaa
     4981 tcagccatct cagacttcag ggattggcgc gattctgcca tctcaagcct caacccttcg
     5041 cgaatctcca gtacatcaga tttggtagca aaggattcgc ttcttgtagt gagagtaatc
     5101 aggttgtttt tgatttcagt cacatcactt tccaggcaac tgacccgccg ttcaaggtcg
     5161 tcattcatgc catcacctcc atcattacca cttcctgtta cttggttgtt ggatacatta
     5221 taggcattct ctttcttttt tctgaaccgc gaaatatgtg caacattctc tgccatcact
     5281 tctcatcacc ctgcttgcct acccagttca taaaggcccg ggccgagtaa cgatgaacaa
     5341 acccacatct gttacaggta agtcggaatt catagttatg gatattttcc cgatcatgtc
     5401 cctcatatcc cggataccca gtaaatggac cgatgtaatc aagcataaca aaagtgccta
     5461 aatcacactc ctcagcagtt ttcggctcag gccccacctc aacaatattc gtcaaataca
     5521 tgtacatatc cgtatcgcca cacgacaaac atttttcatt cgtagacgac tcattgagaa
     5581 aacgcgcaaa attatcgagc gttgccattc ttttaagttc atctaaatga aacttcactc
     5641 ttaagcacct cctagtggat taaacctcac cgcatcctgc aggtaatccg gcgcaagatg
     5701 ggcataaatc atcgttgtct gaatctttgc gtgccccaga attttctgga gcgtcagaat
     5761 attgccgccg ttcatcatga aatgactggc gaaggtgtgg tgcagcgcat gaacagcctg
     5821 gccgtcagga acatcaggtg cgaccgtttt gatgacatcg cgaaccaatg aataatccag
     5881 cgtcggaaac accagtttcc cgccccgttt tttgatcttt tcaaacaggc tttcagaaat
     5941 aggaacggta cggtttttgc tgttcttcgt ttttgaaaaa gtgattcgac aatgaagaac
     6001 acggcgctgc tccagtgccg ctacctcgcc ccatcgcgcc ccggtcgaca gaaggatttc
     6061 gacagccagt cgttcatcgg gattttcagc cagtgcatcc agcaactgaa cacattcaga
     6121 cttactcaga tatcccattt cgcgctcctt aaccttcatt cctttaaggc cttgaacggg
     6181 gttatcgtta agaaaatggc cggatgagat gagtgcggta aacatcgcgc ttaacgcccc
     6241 aatctctcga tttatggtgc tgggctgtat cccctgctct atcctggaca cacgtagctc
     6301 ggtgagcatc gttgtattaa gtttatgcac gcacgggtca tccattgctt cactcaagcg
     6361 cagcaattta aggcgcgtgt tatgccctga cttcattagc tggccgtggt atttccacca
     6421 caagtcaata agcactgaca gaggacggcg atcaatagag tttcctttcc actcattgtt
     6481 atgctgttgc gccagcaccc accgctcata taaaactgca tccgatttcg ttttaaattt
     6541 tttgcgaatg cgtttgcctt tacgcccctc agggcacatg tcaagaagat accctcccag
     6601 aattgatttt atgctcattc
//
LOCUS       DAJVUN010000202         6564 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.202, whole genome shotgun sequence.
ACCESSION   DAJVUN010000202 DAJVUN010000000
VERSION     DAJVUN010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6564
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.202"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..1066)
                     /gene="ynjE"
                     /locus_tag="OQQ76_003562"
     CDS             complement(<1..1066)
                     /gene="ynjE"
                     /locus_tag="OQQ76_003562"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310490.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YnjE"
                     /protein_id="HCS1969910.1"
                     /translation="MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAID
                     TRPSAFYNGWPQTLNGPSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKADAPVALY
                     GNDKDVDAVKTRLQKAGFTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEV
                     TAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKH
                     GIRHDTTVILYGRDVYAGARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKV
                     KAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGE
                     IAGARWGHAGSDSTHMEDFHN"
     gene            complement(1133..1786)
                     /locus_tag="OQQ76_003563"
     CDS             complement(1133..1786)
                     /locus_tag="OQQ76_003563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1969911.1"
                     /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF
                     SWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALP
                     STLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
                     FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR"
     gene            complement(1786..3321)
                     /locus_tag="OQQ76_003564"
     CDS             complement(1786..3321)
                     /locus_tag="OQQ76_003564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1969912.1"
                     /translation="MVTPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQAL
                     FADPQLPHALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVA
                     FATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKRL
                     LQQVIVLDSLGYSRWQCLNWLLLPSVAPSLAMAMLAIVAWSLSVVDVAIILGPGNPPT
                     LAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGIRKP
                     ATPLLPGTTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLL
                     LWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWML
                     FILQPAWQCIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFSVSIAQYMP
                     TLWLGAGRFPTLTTEAVALSSGGSNGILAAHALWQLLLPLIIFALTALVAKWVGYVRQ
                     GLR"
     gene            complement(3294..4460)
                     /locus_tag="OQQ76_003565"
     CDS             complement(3294..4460)
                     /locus_tag="OQQ76_003565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCS1969913.1"
                     /translation="MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWSNAWGGDT
                     AINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGE
                     NFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRD
                     VTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDA
                     TFARVTAPLWQYLDALHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKI
                     ASCDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPVV
                     WGDPSVLDPQKLPDGQREILQSRMPQDLPPVLAEPHAGWVNALEQEWLRRYGTH"
     gene            complement(4470..5018)
                     /locus_tag="OQQ76_003566"
     CDS             complement(4470..5018)
                     /locus_tag="OQQ76_003566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HCS1969914.1"
                     /translation="MGLPPLSKIPFILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLV
                     SMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSTDKLLAVAD
                     WRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLS
                     ARFNSAMDIPAQGLCRIPEKRS"
     gene            complement(5018..5725)
                     /locus_tag="OQQ76_003567"
     CDS             complement(5018..5725)
                     /locus_tag="OQQ76_003567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1969915.1"
                     /translation="MMKMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAF
                     AAVDQQGIERFIQSYGALAAVVSFLLMTLQAIAAPLPAFLITFANASLFGAFWGGLLS
                     WTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPF
                     DPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTV
                     VIFMAKKIWLERQKRND"
     gene            complement(5740..6417)
                     /gene="ydjY"
                     /locus_tag="OQQ76_003568"
                     /pseudo
     CDS             complement(5740..6417)
                     /gene="ydjY"
                     /locus_tag="OQQ76_003568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416265.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein YdjY"
     gene            complement(6422..>6564)
                     /locus_tag="OQQ76_003569"
     CDS             complement(6422..>6564)
                     /locus_tag="OQQ76_003569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HCS1969916.1"
                     /translation="RFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKN
                     EG"
BASE COUNT         1589 a         1833 c         1714 g         1428 t
ORIGIN      
        1 ggttatgaaa atcttccata tgcgtcgagt cgctaccagc gtgtccccaa cgtgctccgg
       61 ctatttcacc ttttggttta atatagctgt aaccgctggt cgtaccgata aattctggcc
      121 acgaacgaat gctcaccagc gatgcatcct ggcgatgcag cagtccacgg gcctgttcca
      181 tatcgagcat caactgcggt tgtgccggga tcttcacgcc gaaatccggt tccgctttca
      241 ctttcggtgg cgttcctcgc tcaacaggca gtcccgcgtc ggaccaggtt tgccagccgc
      301 catccagcag acgcacatct ttcacgcctg cgtagagcat aatttgcgcc acacgcgctc
      361 cagcgtatac gtcacgcccg tacagaatga ccgtggtgtc atggcgaatg ccgtgttttg
      421 ccagcatcgc ttttagttgt tcatcagaaa ctttgttcca cagcggttcg ctttccactt
      481 cgttggtatc gatgtagtca gcaccgggaa tatggctgat aaggtaaagc ttaggagcgc
      541 cccaggccgc ttcaatgact ttccagtcac cggcaggttt cgccgtaacc tctttacctt
      601 gttgcaggtc gtgcagccat tgcggataaa ccagctgctc aaagtgcggc agtttttgta
      661 gacgggaagg ttcgcttagc gcgtcactca gaatggagat atgcgtaaaa cctgcttttt
      721 gcagtcgcgt tttgacggcg tcgacatctt tgtcattacc gtacagcgcc accggggcat
      781 cggctttcag gttatgttgc ttgatccacg cgttgagctg ttcggtgctc attttgtcga
      841 gccagctggc agagaggttt aaggcggcag gttcatgacc agaagggcca tttaaggttt
      901 gtggccagcc gttataaaac gcgctggggc gagtatctat cgctttgcca ttttgttgtt
      961 gaagctggtc aagtgtaaga ggcttcgcca gttcagcggc ccacgaagaa gcgcaagcca
     1021 gccctaaagc cattgccagc gcggtcattt gagaaacacg tttcatcgaa aatcccgaca
     1081 ttgtagtttt gagtgcgcca ttctgaactg acgcattgag aaaaactttg cgttatcgca
     1141 gtttgttgta attttctgac cactgcgcca tatccagaac agaactatca gcaggaacat
     1201 cctggagatc gtgcgttacc tgaacgacgg ggatcgccag ttcgcgaact tcgctgaaca
     1261 cccactggcg aaaattatcg cgcagagcca catcaagacg gctgaatggc tcatccagga
     1321 gtaacgcttt tggctgagcg agaagggcgc gcagcagggc cacccgcgct cgctgaccgc
     1381 ctgataatgt cgcagggtcc tggtgataag tttcagccag tcccgctcga tcaagcgcgt
     1441 ctttcacggc attgcgcctg gcagtcccct tgagcgtcga cggtagcgcc agcagtaaat
     1501 tttgcccgac gctgaactgg tcaaataaca gtgcatcctg gaaaagaatg ccaatctgac
     1561 gctgtgcggt gggtagcatg tcaatccgtt gctcattgag ccatagctca cctgtacaag
     1621 aaaactgtcc agccagtgca ccaatcatcc atgaaaacag agtggatttt ccacagccag
     1681 acggccccat taacgtgacg atgtcacctt tatcaaccgt aaagttaacg tttgtcagca
     1741 agcggctttc tggtaaacgt agcgaaacat ttttcacgca gagcattagc ggagtccttg
     1801 tctgacataa cctacccatt ttgcgactaa cgcggtcagg gcaaaaataa taagcggtaa
     1861 caacagttgc cataaagcgt gggcggcgag aataccgttg ctgccgccgc tgcttaatgc
     1921 caccgcctca gtggtgagcg tcggaaaacg ccccgcgccc agccacagcg tcggcatata
     1981 ctgcgcaata ctgactgaaa atcccaccgc gaaggcaatc agcacagggc gcaacatgag
     2041 tgggcatttc acgtaaaaga agattttggc ccgcgaccag cccagtgttt gcgcaatcaa
     2101 aattaaccgt gaatcaatgc actgccaggc gggttgcagg ataaacagca tccacggcat
     2161 tacccacagc agatgccccc agaccaccgc cgtccagctt ccatccaggt tcagccatag
     2221 cgccagcgtg tactggcccg ccaccagtgg cagagcgggc aatagaatgg gcaaccatag
     2281 ccacaactgg cgacgctgtg gcccccattc cagccacagc agtaacagga gcaaagcgat
     2341 gaatgttgct accagcccca ttgtcagact gttgatgagt gcttcactat tgatcgtcga
     2401 ctgatccgcg aggatcgcca gcagaaccac acacagcaca ccggttaagg gtaaaaaact
     2461 cgccagcgta gtgcctggta ataaaggtgt ggcaggcttg cgaatgccat ctacgcgggg
     2521 aatagtgcgc cgccagctgc gccatagcag atagctcagc aaaacgtagg cggcgagtaa
     2581 cagcatcagc agcagactgg cgagtgcgcc tttcgtttgt tgatccgcgt cgccctgagt
     2641 taaccactgc cagctaatta ctgccagcgt cggtggatta cctggcccaa gaataatcgc
     2701 cacatccacg accgaaagcg accaggcaac aatcgccagc atcgccattg ccagcgaagg
     2761 cgcgacggag ggcaacagca gccagttcag gcattgccag cggctgtagc ccagcgaatc
     2821 cagcacaatg acctgctgca acagccgttt ttcgctcaat actgccgcta agatccacag
     2881 cagaaatgcg ctttctttca ctgcaagggt gaggcccaga ccgatgccaa atcggtccat
     2941 tggcggagtg aaatacggga aatagtcata tagcagccct ccgtcagcaa agagcagcag
     3001 ggcgctggtg gcaaaagcca catggggaat ggcgagcagc cacggcagac gggcgcacat
     3061 acgctgccat ttcggcccag gccatagcgc cacaatcacc agcagggcaa tcaacaatgc
     3121 cccgaccgcc gcgatggttg tcgacaccag cgttgccagt aatgcatgcg gtaactgtgg
     3181 atcggcaaat aacgcctgcc agtgtgtcaa cgacaacgca ggcgatatca gcgtgagagc
     3241 tgccgggatc agcggtgcat aaatcaccgc caccatcgcc cacagcaaaa agattaatgc
     3301 gtaccgtaac ggcgtaacca ttcttgttcc agtgcattca cccatcctgc gtgcggttca
     3361 gccagtaccg gcggcagatc ctgcggcatt cttgattgca atatttcgcg ctgcccgtca
     3421 ggcagttttt gcggatcgag aacagaagga tcgccccaga caacgggatc tgctttacgc
     3481 agttgcgcat cgggtgagag cagaaaattg gcaactacct tcgccgcagc actggcattc
     3541 gcgttggctg gaatggtgac gaaatgcacg ttgccaatca tcccctcgcg aaagccaaaa
     3601 ctgtaactgc ttgccggcaa atcgcagctg gcgatttttt gctgcgcatg cgcggggtta
     3661 aaggtcagcg acaggcgcaa tgtgccggct ttcagcagag catccatccg cgcgggcgaa
     3721 ggcgggaaat cctttccttc gcgccacaaa tacggatgca gtgcatcaag atattgccac
     3781 aagggcgcag tgacacgggc gaaagtcgca tcgtccggcg cttcttttaa tgcggcggga
     3841 tctggcgtca gcataatcag caactgttca agaaacgccg tgccggtaaa gtccggtggg
     3901 cgcggataag taaccgtgcc gggattggct ttagcaaact ccagtaaggc ttgcggcgtt
     3961 tgtggtggct gtggcgtaac atcgcggcgg gcgataaacg tcagttgtgc gccgccccag
     4021 ggcgattccg caccttgtgt cggcactgaa aaatcttccc gcaccggcag ctgtgtgtcg
     4081 acatagcgcc agttgggcag agtctccgcc cagcccgttt gtaataaatt ggcctctttt
     4141 aaggtgcgga agttttcgcc gttcacccag agcagatcca ccgagccgcc cgttttacga
     4201 ccggcagcag cttcggtctg aatgcgcttc accgcgtctg cggcatccgc gagacgaaca
     4261 atcttcaggt ttatagcgta atgggttttc atctcgccgc taacccagtc gagatagcgg
     4321 ttaattgcgg tatcgccgcc ccaggcgtta gaccagacgg tttgcccttt ggcctcattt
     4381 ttaatttcct gccagtcact ggcatgtgtt gccaaagaaa acagcgataa caatcccagc
     4441 aaccacccac aatggcgcat cttctctcct taagaacgtt tttccggaat acggcacagc
     4501 ccctgagcgg gaatgtccat ggcagaatta aaacgagccg acaggttttg caggccgatc
     4561 aatgccgtca gttcggtgag cgcctgagcg tcaaaatgcg cagccagtcg ggtacgcagg
     4621 gcatcatcga ctgttggcgg tgtgacgctt gcggcttcgg cgtactccag cgccagccgt
     4681 tcttcatcgc taaagagcgg gctttgccgc cagtcagcca ctgccagcag tttatcggtg
     4741 ctgccggtac gctcggcgac tttcatactg gtgatatcca cacaaaactc acacaggcac
     4801 atttgcgcaa tgcgcgcgct gacaagcgat cgcactaccg gatcgagcgg tgagcgtttg
     4861 cgctccagcc acccaacaaa cattgacacc aaataaaaga taaacgggat ccgcccccac
     4921 cagcgaatcg ggcttagcac ctcgccgtaa tggcgacgat gcagccacgc ctgcggacgt
     4981 aaaatgaaag gaattttgct aagcggcggt aaacccatca gtcattcctc ttctggcgct
     5041 caagccatat tttcttcgcc ataaaaatca ccacggtcag ggcaaacaga ataaacagtc
     5101 cggtgacaaa ccagaaagta ccgcctgtta acatgctgcc cgcccaggaa taaacaatag
     5161 tcgccggtaa ttgaccaagc ccggtggcga taaaaaacga gcgaaaacgt attgaagtca
     5221 gaccggcagc atagctgatt ggatcgaaag ggacaaaagg caataaccga cagaccagga
     5281 tggtgtgttt gccgtagcga gtgaaaaagc cgtccatact gtcaagcacg gttttgccgg
     5341 ttaatttttc caccacttcg cggcccatca ctctggcgat aaaaaagcac agcgccgcgc
     5401 cggccatcga actggtccac gacagcaagc cgccccagaa cgcgccaaac agcgacgcat
     5461 tggcaaaggt gatcaaaaac gcaggtagcg gtgcagcaat ggcctgtaaa gtcatcaaca
     5521 agaacgagac aactgccgcc agtgcgccgt aagactgaat aaagcgttct ataccctgtt
     5581 ggtccacggc ggcaaacgcc gcaacgctgc gattgataaa ctcatggacg ccgggaagca
     5641 gcgcccatgc gagcagcata gcgaacaaca ggatgatgag ggttatacgg tagtaccaga
     5701 ttttacgcga ttgcatcttc atcatccttt atcctggctt tattcggtga ttttaaaggt
     5761 aaccgttgcc agcgtgttat ccgccgggag aactgaggca ttgcctttga atttcacttc
     5821 gccgcgtttt tccaccgcac cataagtgta tgttgcattg ctgacgatgc cgaccgggca
     5881 gctatccaga cacaccagtc aacccgtttt cttctcttct gctgccgtta aattaccgcc
     5941 aaagcgcatg tccagtttct tgccattact gtcaacaatc acttcatcga aggaatacgc
     6001 ttttgccgcc ccttgccagt tgaccgaaat atccagtttg ctgcctgtga catgagtcgt
     6061 ttctttatta tccatcgtca tgttttcgcc cggcgtacca cctgcctctt tcagggcttc
     6121 ataaaatgct ttcggggtcg cataagccat aaacagcgat ttatgtccgt tggagccatc
     6181 tttaaacaca ataccgtgac gagtgtcgtc ggtgaggaaa cgaccattaa tttgcaccag
     6241 catggttacc gtatggttat tggcatcgac gcgcagcggt tggctgttcg aaagtccgtc
     6301 gtattccact tttgccgccg cattctcttt ttgatcgcag ccgctaagcc cggcaacagc
     6361 cagtaagcag agtgcagcca gtcctttttt ccatgacact gaataatgtt gcgacatcgt
     6421 tctatccttc attttttggg tgagtaagcg ggctgcggcg cgaagcagac agatccacat
     6481 gtttgtgtcg ggcgtagagt tttgcgagct ggacgagaat aaacagcgcc aggcccgcca
     6541 gacagagttg taaaataaag cgca
//
LOCUS       DAJVUN010000203         6325 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.203, whole genome shotgun sequence.
ACCESSION   DAJVUN010000203 DAJVUN010000000
VERSION     DAJVUN010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6325
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.203"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..3206)
                     /locus_tag="OQQ76_003570"
     CDS             complement(<1..3206)
                     /locus_tag="OQQ76_003570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415890.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1969917.1"
                     /translation="MTVKISGVLKDGTGKPVQNCTIVLKARRTSSTVVVNTVASENPD
                     EAGRYSMDVEHGQYSVTLLVEGFPPSHAGTITVYEGSRPGTLNDFLGAMTEDDVRPEA
                     LRRFEQMVEEVSRNASAVAQNTAAAKKSASDASASASEAATHATDAAASARAASTSAG
                     QAASSAQSASSSAGTASTKATEALKSAAAAESSKSAAATSAGAAKTSETNAAASQQSA
                     ATSASTATTKASEAATSARDASASKEAAKTSETNARSSETAAEQSASAAAGSKTAAAS
                     SASAASTSAGQASASATAAGKSAESSTSSASTATTKAGEATEQASAAARSASAAKTSE
                     TNAKASETSAESSKTAAASSASSAASSASSASASKDEATRQASAAKGSATTASTKATE
                     AAGSATAAAQSKSTAESAATRAETAAKRAEDIASAVALEDASTTKKGIVQLSSATNST
                     SETLAATPKAVKSAYDNAEKRLQKDQNGADIPDKGRFLNNINAVSKTDFADKRGMRYV
                     RVNAPAGATSGKYYPVVVMRSAGSVSELASRVIITTATRTAGDPMNNCEFNGFVMPGG
                     WTDRGRYAYGMFWQYQNNERAIHSIMMSNKGDDLRSVFYVDGAAFPVFAFIEDGLSIS
                     APGADLVVNDTTYKFGATNPATECIAADVILDFKSGRGFYESHSLIVNDNLSCKKLFA
                     TDEIVARGGNQIRMIGGEYGALWRNDGAKTYLLLTNQGDVYGGWNTLRPFAIDNATGE
                     LVIGTKLSASLNGNALTATKLQTPRRVSGVEFDGSKDITLTAAHVAAFARRATDTYAD
                     ADGGVPWNAESGAYNVTRSGDSYILVNFYTGVGSCRTLQMKAHYRNGGLFYRSSRDGY
                     GFEEDWAEVYTSKNLPPESYPVGAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAAAYP
                     SGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTHSASASSTDLGTKTTSSFDYGTKS
                     TNNTGAHTHSVSGTAASAGAHTHSMTFVSGGSSGAPGSGSPDYSKYSVNTSSAGAHTH
                     SVSGTAASAGAHAHTVGIGAHTHSVAIGSHGHTITVNAA"
     gene            complement(3358..3957)
                     /locus_tag="OQQ76_003571"
     CDS             complement(3358..3957)
                     /locus_tag="OQQ76_003571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
                     /protein_id="HCS1969918.1"
                     /translation="MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPG
                     SDDLNGINVKYRYEFTDALGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAVDLAYEGSGSGDWRTDAFIVGIGYRF"
     gene            complement(4025..>6325)
                     /locus_tag="OQQ76_003572"
     CDS             complement(4025..>6325)
                     /locus_tag="OQQ76_003572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_305676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1969919.1"
                     /translation="LKDRHTAVEVNYTDPQNGWQTSTELVEDPEAILRYGRNLLKMDA
                     FGCTSRGQAHRAGLWVIKTELLETQTVDFTLGSQGLRHTPGDIIEICDNDYAGTLTGG
                     RVLSIDAATRTLTLDREVTLPETGTSAVNLINGSGKPVSVDITAHPAPDRIQVSTLPD
                     GVETYGVWGLSLPSLRRRLFRCVSVRENTDGTFAITAVQHVPEKEAIVDNGARFEPQS
                     GSLNSVIPPAVQHLTVEVSAADGQYLAQAKWDTPRVVKGVRFSLRLTSGSGEDSRLVT
                     TAITADTEHRFSGLPLGEYTLTVRAINSYGQQGEPATTTFRIAAPAAPSRIELTPGYF
                     QITATPHLAVYDPTVQFEFWFSEKRIADIRQVETAARYLGSALYWIAASINIKPGHDY
                     YFYIRSVNTVGKSAFVEAVGRASDDVEGYLDFFKGEIGKTHLAQELWTQIDNGQLAPD
                     LAEIRTSITNVSNEITQTVNKKPENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMQDG
                     RLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNEVFLK
                     YLTAPTITSGGNPPAFSLTPDGRLTAKNADISGNVNANSGTLNNVTINENCRVLGKLS
                     ANQIEGDLVKTVGKAFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFSGAKHE
                     KEHTDIYSSCRLIVRKNGAEIYNRTALDNTLIYSGVIDMPAGHGHMTLEFSVSAWLVN
                     NWYPTASISDLLVVVMKKATAGITIS"
BASE COUNT         1348 a         1812 c         1596 g         1569 t
ORIGIN      
        1 gcagcgttaa cggtgatggt gtgtccatgt gaaccaatcg caaccgagtg cgtatgcgca
       61 ccaataccta cagtatgtgc gtgtgcacct gcgcttgcag ctgtacccga tacagagtgc
      121 gtatgagcgc ctgcagaaga agtgttaaca ctgtatttag aataatcagg tgatccactt
      181 cccggagcac cactggaacc acctgaaaca aatgtcatcg aatgggtatg tgcaccggct
      241 gaagcagccg taccgctaac actatgggta tgcgcaccag tgttattcgt ggatttagtg
      301 ccgtaatcaa acgacgatgt ggttttcgtc cccaaatcag tactggatgc gctggcgctg
      361 tgggtatgcg attttatgcc gtcctgttcc tgagacaata cggcacgacc actggcgggc
      421 ttgcccttaa tcgtccagcc acgcatatca gggatcacgc ctgacggata agcggctgca
      481 agtttcgggt aggcagattt gtcaaaagtc tgcccctgca tcagggcata accagacgga
      541 acggtatctg atggccacgg gattggtgcg ccgactgggt agctttctgg tggaagattt
      601 ttcgaggtat aaacttctgc ccagtcttcc tcaaaaccat aaccgtctct tgaagaacgg
      661 tagaacagac caccatttct gtaatgcgcc ttcatctgca aggtccggca acttccgact
      721 ccggtataga agttaaccag aatatagctg tcgccagagc gggtgacatt ataagcgcct
      781 gattcggcat tccagggaac gcccccatcc gcatcggcat atgtatccgt tgcccttctg
      841 gcaaaagcag ccacatgcgc ggcggttaaa gtaatatctt tggaaccatc aaactcaaca
      901 ccagaaaccc gtcttggcgt ttgcagcttt gttgctgtta atgcattacc gttcagactt
      961 gcggacagtt tggttccaat aaccagttcg ccggttgcgt tatcaatagc aaacggtctt
     1021 aatgtattcc agccaccata aacatcacct tgattggtaa gcagcaggta agttttagcg
     1081 ccatcattac gccataatgc cccatactcc ccacctatca ttcgaatctg attaccacca
     1141 cgcgctacaa tttcgtctgt ggcaaaaagt tttttgcacg acaagttatc gttaacgatt
     1201 aacgaatgag actcataaaa accacgccca ctcttaaaat caaggataac gtccgccgcg
     1261 atacattcag tcgccggatt tgttgcccca aacttatagg tcgtatcatt aacaacgaga
     1321 tcagcaccag gtgcggatat tgacaggcca tcttcgataa acgcaaaaac agggaaagca
     1381 gcgccatcaa catagaacac agagcgcaaa tcatcgccct tattactcat cattattgag
     1441 tggatggctc gttcattgtt ttgatattgc cagaacattc cataagcata acgccccctg
     1501 tcagtccagc caccaggcat aacaaatccg ttaaactcgc agttattcat cggatcgcct
     1561 gcggttcgcg ttgccgtggt gataatgacc cttgatgcca gttcgcttac tgagccagca
     1621 gaacgcataa caacaacagg gtaatatttt ccagatgttg cacctgcagg agcgttaacc
     1681 cgcacataac gcataccacg cttatcagca aagtctgttt tactgaccgc gttaatgttg
     1741 ttcaggaagc gtcccttatc gggtatatca gcgccgttct ggtctttctg cagacgtttc
     1801 tctgcattgt cataggctga ttttactgcc tttggcgttg ccgccagcgt ttcagacgta
     1861 ctgttggtcg cactgctgag ctgtactatc ccctttttcg tcgtacttgc atcctcaagc
     1921 gccacggcgg atgcaatatc ctctgcccgt tttgccgctg tctcggcgcg cgttgccgcg
     1981 gattccgccg tacttttgct ctgtgctgcc gccgtcgcac tgccagctgc ctctgtcgcc
     2041 ttcgtggatg ctgtcgtggc gctgcccttc gctgcggacg cttgtctggt cgcctcatct
     2101 tttgaagcag acgccgatga tgccgatgac gccgccgaac tggcggacga tgcggcagcc
     2161 gtttttgagg attctgcgct ggtttccgac gctttcgcgt tcgtttcgga tgtcttcgct
     2221 gcggaagcag acctcgctgc tgcgctggcc tgttcagtgg cttcgccagc cttcgttgtg
     2281 gctgttgaag cagacgatgt ggagctttct gccgattttc cggcggcggt ggcactggct
     2341 gaggcctgcc cggcacttgt tgacgctgca ctggcagacg acgcagccgc tgtttttgag
     2401 cctgccgcag ctgaggcact ctgttccgct gccgtttcag aagacctggc gtttgtctca
     2461 gacgtttttg ccgcctcttt tgaagccgac gcatcccgtg ctgaagtggc tgcttctgac
     2521 gctttcgtgg tcgcggtgga tgcagaagtg gctgctgatt gttgtgacgc tgccgcattc
     2581 gtttctgacg ttttcgccgc accggcactg gtagccgccg cgctttttga ggactctgca
     2641 gcggcagcac tttttaatgc ttcagtggcc tttgttgatg ccgttcctgc gctggaagac
     2701 gctgactgag ccgacgacgc ggcctgtccg gctgacgtgc tggcggcacg tgctgaggct
     2761 gcagcatcgg ttgcatgagt tgccgcctcg ctggctgatg cactggcatc gctggctgat
     2821 tttttcgcgg ctgccgtatt ctgtgcaacc gcggaggcgt tacgtgacac ctcttccacc
     2881 atctgctcaa agcggcgcag tgcctccggt cggacatcat cctccgtcat ggcaccgaga
     2941 aaatcattca gcgtacctgg tctggaacct tcatagacgg taatggtccc ggcatgtgaa
     3001 ggcggaaaac cttcaaccag cagggtgacg ctgtactgac catgctcaac atccatgctg
     3061 taacgtccgg cttcatccgg attttcagag gccaccgtgt tcaccaccac cgtgctgctg
     3121 gttcgtctgg ccttcagcac aatggtgcag ttctgtactg gttttcctgt gccatcttta
     3181 agcacgccag aaatttttac tgtcatactt ttccaccaat aaaaaaagcc cgcagcagtg
     3241 acgccacggg cttcaggaca gtgtaacttt acgtttcctc aaacgcagtt caccccataa
     3301 agtggatgaa cctgcgtatc ataacaatat ttacagaaga taaatcggcg tctgttgtca
     3361 gaaacggtat ccgataccaa caataaatgc atccgttcgc cagtcgccac taccggaacc
     3421 ttcataagca aggtcaacgg ccacggattc ggtcgggtta aactgcacgc cagcccccca
     3481 cgccagagag gtattgctgt ggcgaccgtc atcacttccg gtcagcacgt cgtgcgtttt
     3541 ccccttgttg tcagttacgc ggagataatc cccggagaaa gtcgacacac ggctgtaagc
     3601 cacacccgcc atcgcatacg cgctgaacca ttcattcacg cgtacagacg gccccgccat
     3661 cacgctgaac cagcggttac gcacggaatc ttcatgccag cgggtatcgc tgtagcgcgt
     3721 tttttgctca tcctcagcat tggcataact gaaggacgta atcagcccca gcgcgtccgt
     3781 aaactcataa cggtatttca cgttaatccc gttcagatca tcactaccgg gaacgttcgt
     3841 cgaggcatgg agataccccg cgctcagcgt ggactgatgt tctgctgcac tcgctggcgt
     3901 agcagcggcg acctgccaga ctactgcgga caaaataaca gcacataatt tacgcataat
     3961 tacctctcgc ttttctgcaa taaaaaaggc gccatttctg gcgcccgtat ctgggttata
     4021 aaattcagct aatcgtgatg cctgcagtgg ctttcttcat caccacaacc agcaaatcgc
     4081 tgatacttgc tgtgggatac cagttattta ccagccatgc tgacaccgaa aactccagtg
     4141 tcatgtgacc gtgaccggca ggcatatcaa taacaccact gtaaatcagc gtattatcca
     4201 gcgcggtacg gttataaatt tcagcaccgt ttttccgcac tatcagacgg catgaggagt
     4261 aaatatcagt atgctctttc tcatgtttag cgccgctgaa tgccaccgcc ggaataacaa
     4321 tctgccggtc aaacggctga tcgtcataaa ccctgacggt aatggttcct gatggccacc
     4381 gctctggtgc acgggagtcc cgggggaaag ctttgcccac tgttttaacg agatcgcctt
     4441 caatctggtt cgcggacaat tttcccagaa cccgacagtt ctcgttaata gtgacgttgt
     4501 tgagcgtccc ggagttcgca ttcacgttac cgctgatatc ggcatttttc gccgtcagcc
     4561 gcccgtccgg tgtcagggaa aatgccggag gattaccgcc gctggtaatg gtgggagccg
     4621 tcagatattt caggaacact tcattcataa atatctgatc gccctgacca acaaacatcg
     4681 gctttgtgtt gccattcgca ggattaatca tcgcaatcct gtctgccgcc agcagcacct
     4741 gactctgcat tcctgctggc gtattctcaa taccggcacc gatacccgca atataaaggc
     4801 gtccgtcctg catctgctgc agtttcacgg cccacatgct gttcaggtta ttatttgtat
     4861 caacctgaac tttctgtatc tgctggattg ccgcactctg attttccggt tttttattga
     4921 cggtctgcgt gatttcattg ctgacattcg taatggacgt cctgatttca gccaggtccg
     4981 gcgcaagctg accgttatca atctgcgtcc acagctcctg ggccagatgt gttttcccga
     5041 tttctccttt gaaaaaatcc aggtaacctt ccacatcatc gctcgcccga ccgacagcct
     5101 ccacgaatgc cgatttgcca acagtattca cactgcggat ataaaaataa taatcatggc
     5161 ccggtttgat attgatactg gcagctatcc agtacagcgc cgagccaaga tagcgggctg
     5221 cggtttcaac ctgcctgata tccgcaatcc gcttttccga gaaccagaac tcaaactgta
     5281 ccgtcgggtc ataaacggca agatgtggcg ttgcggttat ctgaaaatag cccggcgtca
     5341 gctcaatccg cgacggtgct gccggtgcgg caatccggaa ggtggtggtg gccggttcgc
     5401 cctgctggcc ataactgtta attgccctga ctgtcagggt gtattccccg agcggcagac
     5461 cactgaaacg atgctctgta tccgcagtga tagcggtggt caccagacgg ctgtcttctc
     5521 cgcttccgct ggtcagtcgc agactgaagc gcaccccctt caccacccgc ggcgtgtccc
     5581 atttcgcctg tgccagatac tggccgtcag ctgcgctcac ctccaccgtc aggtgctgca
     5641 ctgccggtgg gatgacgctg ttcagggagc ctgactgcgg ctcaaagcgg gcaccgttat
     5701 ccacgatggc ttctttttcc ggtacgtgct gcaccgccgt gatggcaaag gtgccgtccg
     5761 tgttttcccg gactgagaca cagcggaaca ggcgacggcg cagtgacggc agggagagtc
     5821 cccacacccc gtatgtctcc acaccatcag gcagggtact gacctgtatc cggtccggcg
     5881 cggggtgtgc ggtgatgtcc acactcaccg gcttaccgct gccgttaatc aggttcaccg
     5941 ccgatgtacc tgtctccggc agggtaacct cacggtccag cgtcagggtg cgggtggcag
     6001 catcaatgga caggacacgt ccgccggtca gggtcccggc atagtcatta tcacagattt
     6061 caataatgtc accgggtgtg tgccgcagcc cctgagaccc gagcgtgaag tccaccgtct
     6121 gcgtttccag cagttcggtc tttatcaccc acagtccggc acggtgggcc tgaccgcggc
     6181 tggtacagcc gaacgcgtcc atcttcagca gattgcgccc gtagcgcagt atggcttccg
     6241 ggtcttccac cagttccgtg gaggtctgcc agccgttctg cgggtcggtg taattcacct
     6301 ccaccgccgt gtgccggtcc ttcag
//
LOCUS       DAJVUN010000204         6276 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.205, whole genome shotgun sequence.
ACCESSION   DAJVUN010000204 DAJVUN010000000
VERSION     DAJVUN010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6276
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.205"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..65
                     /locus_tag="OQQ76_003573"
     CDS             <1..65
                     /locus_tag="OQQ76_003573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311167.1"
                     /note="catalyzes the of heptose(II) of the outer membrane
                     lipopolysaccharide core; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HCS1969920.1"
                     /translation="GLVMHVEKGKVYLDGEFVNH"
     gene            complement(104..529)
                     /gene="nudI"
                     /locus_tag="OQQ76_003574"
     CDS             complement(104..529)
                     /gene="nudI"
                     /locus_tag="OQQ76_003574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase NudI"
                     /protein_id="HCS1969921.1"
                     /translation="MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEYGE
                     RIEEALRREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSAN
                     REVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRLKGLL"
     gene            808..1350
                     /locus_tag="OQQ76_003575"
     CDS             808..1350
                     /locus_tag="OQQ76_003575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969922.1"
                     /translation="MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTEST
                     GLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGG
                     LQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGK
                     DGNRDNAVADGPYVGVNASF"
     gene            1450..2652
                     /locus_tag="OQQ76_003576"
     CDS             1450..2652
                     /locus_tag="OQQ76_003576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide deamidase-related
                     protein YfaY"
                     /protein_id="HCS1969923.1"
                     /translation="MLKVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRSNTVG
                     DNLDDLVTILRERSQHADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMER
                     YFHERGRVMAPSNRKQAELPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVM
                     VEHEILPRLRERFSLPQPPVCLRLTTFGRSESDLAQSLDTLQLPPGVTMGYRSSMPII
                     ELKLTGPASEQQAMEKLWLDVKRVAGQSVIFEGTEGLPAQISRELQNRQFSLTLSEQF
                     TGGLLALQLSRAGAPLLACEVVPSQEENLAQTAHWITERRANHFAGLALAVSGFENEH
                     LNFALATPDGTFALRVRFSTTRYSLAIRQEVCAMMALNMLRRWLNGQDIASEHGWIEV
                     IESMTLSV"
     gene            2872..3654
                     /locus_tag="OQQ76_003577"
     CDS             2872..3654
                     /locus_tag="OQQ76_003577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HCS1969924.1"
                     /translation="MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYL
                     LLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCH
                     LGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGL
                     VWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYPDVRCVAAPVFNANNELTAAIS
                     VVGTRLQINEEYRDYLAGKAIACARDISRLLGWKSPFDLQAS"
     gene            3669..4874
                     /gene="rhmD"
                     /locus_tag="OQQ76_003578"
     CDS             3669..4874
                     /gene="rhmD"
                     /locus_tag="OQQ76_003578"
                     /EC_number="4.2.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311162.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnonate dehydratase"
                     /protein_id="HCS1969925.1"
                     /translation="MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATP
                     MSKYRDYEQSRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEG
                     KCVSDIKLIHDQMLNATLYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV
                     RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFW
                     LMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYEGYRELKRNAPVGMMVTSGE
                     HHGTLQSFRTLSETGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHA
                     VITFTNTPFSEFLMTSPDCSTMRSQFDPILLNEPVPVNGRIHKSVLDKPGFGVELNRD
                     CNLKRPYSH"
     gene            4931..6220
                     /locus_tag="OQQ76_003579"
     CDS             4931..6220
                     /locus_tag="OQQ76_003579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969926.1"
                     /translation="MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQI
                     DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWAD
                     TEAKFLIVRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS
                     GALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQ
                     LASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT
                     ASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVA
                     LCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA
                     SDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH"
BASE COUNT         1455 a         1499 c         1684 g         1638 t
ORIGIN      
        1 atggtttagt catgcatgtg gaaaaaggca aagtttatct ggatggggaa ttcgttaacc
       61 actaaatttt caatctgaca gccagtgatg gctgtcatca ttgttaaaga agacctttca
      121 aacgtaacgt ttttcgggtg gcaacattca aatcataatg caccagatct tcaggtttta
      181 cccacgcgta gtcctgaaac tcttcgttta ttttcacttc tcggttggca gaaacgcagt
      241 caaaaatcag gtaaatcata taaatctctt ccttgcgacc atctgcatac gttttggtgc
      301 gaatatcatc gctgaaggtc cacggcgtga tttctgtcaa aagcagctgt tctcccagtt
      361 cttcgcgaat ttcgcggcgt agtgcctctt caattcgttc gccatactcc acgccgccac
      421 ccgaaagcgc ccattgaccg gggaaaacgc cgcgatcgtc ggccattttg cacagcagat
      481 aagcaccatc attttgaatc aaagggcata caatagtccg ttgtcgcaca ggggtattcc
      541 ttataaataa aaagaaacca tgagaatacg gtaactcaga aatatgtgaa agtgacagta
      601 atctcttttg cgatgataac tgcacttatt attatttttg tgtgtatcgg taaagtgtgt
      661 ttattttttc ggcgtttaat tatttaagaa gtatttagtt acaataagtg actagatccc
      721 ttttttcgct cattgaatcc tctgtgccag gcagtacaat cccgcagctt tgggaatttt
      781 gattaattgc ttgtgggaaa ggggataatg aaaaaaattg cgctagcagg tctggccgga
      841 atgctgttgg tttctgcatc ggtcaatgca atgagcatca gcggtcaggc gggtaaagaa
      901 tacaccaata ttggtgtcgg ttttgggact gaatcgacgg gcctggcgtt aagcggtaac
      961 tggacacata acgacgacga cggtgacgtc gctggcgtgg ggctggggtt gaatctgcct
     1021 ctagggccgt taatggcgac cgttggcgga aaaggcgttt acaccaaccc gaattacggc
     1081 gatgaaggtt atgccgcagc ggtaggaggt ggtttgcagt ggaaaattgg caacagcttc
     1141 cgtttgtttg gcgagtatta ctactctccg gattcactct ccagcggtat tcaaagttat
     1201 gaggaagcga atgctggcgc gcgttacacc attatgcgtc cagtcagtat tgaggcgggt
     1261 tatcgctacc tgaatttgtc gggtaaagat ggtaaccgcg acaacgccgt ggctgacggc
     1321 ccgtatgttg gggttaacgc cagtttctga tcccttccgg cgcggcattc tgtcgcgcca
     1381 ttcagtttct tactacgcct tatctccctt tgcgttatag tgattcgata acaaaagcag
     1441 gagataacca tgttaaaagt ggaaatgtta tccaccgggg atgaagtgtt acacgggcaa
     1501 atcgttgaca ctaacgctgc ctggctggcc gattttttct ttcatcaggg gctgccatta
     1561 tctcgcagca atacggtggg ggataacctt gatgacttag tcaccattct tcgcgaacgt
     1621 agtcagcacg ccgatgtgct gatcgttaac ggcgggctgg gaccgaccag cgatgattta
     1681 agcgcactcg ccgctgcgac agcaaaaggt gaaggcctgg tgctgcatga agcctggctc
     1741 aaagagatgg aacgctattt ccacgaacgt ggacgagtaa tggcaccgag caaccgtaaa
     1801 caagcggagc tgcctgccag tgctgaattt atcaataacc cggtaggcac cgcctgtggt
     1861 tttgccgtgc agcttaatcg ttgcctgatg ttctttactc ccggcgtacc gtcagaattt
     1921 aaggtgatgg tcgagcacga aatcctgccg cgcctgcgcg agcgtttttc tttaccacag
     1981 ccgccggttt gtctgcgttt aactaccttt ggtcgttcgg aaagcgatct ggcacaaagc
     2041 ctggacactc tacaactgcc gccgggcgta acaatgggct atcgctcttc aatgccgatt
     2101 atcgaactga aactcaccgg accggcaagc gagcaacagg cgatggaaaa actgtggctg
     2161 gacgttaaac gtgttgccgg acagagcgtg attttcgaag gcaccgaagg actgcccgcg
     2221 cagatcagtc gcgaattgca aaaccgccag ttcagcctga cgttgagcga gcaattcacc
     2281 ggtggtttat tggctttgca actttctcgc gcaggtgctc cattgctggc gtgtgaagtg
     2341 gttccttcac aggaagaaaa cctggcgcaa actgcgcact ggattacaga acggcgggcc
     2401 aaccattttg ccgggctggc actggctgtt tcgggtttcg agaacgaaca tctcaacttt
     2461 gcgctagcca caccagacgg cactttcgct ctgcgtgtgc gtttcagcac tacgcgctac
     2521 agcctggcta tccgtcagga agtgtgcgca atgatggcac tgaatatgct gcgccgttgg
     2581 ttaaacggcc aggatatcgc cagtgagcat ggctggattg aggttattga gtccatgacc
     2641 ttatctgtct gattccgcca ctctgtgccg gtttactgca ccggcacatt ccccctccgg
     2701 caaaacttgt ccaacctgtt gcactcaata agaaaaaatc cgtgcactga ttcacaaatt
     2761 tgtgcgtaat ttctccagtc cgctggacga ggagcgggat ttgatgcgct tcacaatttt
     2821 actccccctg agcaacgaga ctgattccag tatctaagac tggagtccag tatgttggaa
     2881 tcaagcaaag ttcccgccct gacacgggct attgatattc tcaatttgat tgcccgcatt
     2941 ggcccctgta gtgctgcgac gatcattgac acattgggaa tccctaaaag cacggcctat
     3001 ttgctgctta atgaactcag gcgtcagcgt tttcttagcc ttgatcacca ggaaaatttt
     3061 tgtttgtgga ccaggctggt ggagctttct ggtcatgcgt taagcaagat ggatctccgg
     3121 gaactggctc gaccgcgttt gacgcaactg atggatacca ccgggctgtt atgtcatctg
     3181 gggattattg ataacggcag cgcttattac attttaaaag tggagtcatc agccactatc
     3241 agcgtgcgtt cccatgaagg aaaaagcctt tcgctttatc gctccggaat aggtaaatgc
     3301 ctgcttgcct ggcaacctgc agcggtacag caaagtatta tcgaagggct ggtctgggag
     3361 caggcgacac ccacaacgat tactcatcca cagcaacttc acgaagaact ggcgcgtatt
     3421 cgccgtcagg gctggagcta tgacaacggc gaagattacc ccgatgtccg ttgtgtcgct
     3481 gcgccggtgt ttaacgccaa taacgagctt accgctgcga tctcggtggt cggtacccgc
     3541 ttacaaatca atgaagaata ccgtgattat ctggcgggca aggccattgc ctgcgccagg
     3601 gatatttcac gtctgttggg atggaaaagt ccctttgact tacaagcctc ataacaatgg
     3661 agaacatcat gaccctacca aaaattaaac aggttcgcgc ctggtttact ggcggtgcga
     3721 cagcagaaaa aggcgctggc ggcggtgatt atcacgacca gggggcgaat cactggatag
     3781 acgatcatat tgccaccccg atgagtaaat accgcgatta cgagcagtca cgccagtcat
     3841 ttggcattaa cgttcttggc acgttggttg ttgaagtcga agcagaaaac ggccagaccg
     3901 gattcgctgt ttcgacagcc ggtgaaatgg gctgttttat cgtcgaaaaa caccttaacc
     3961 gtttcattga gggtaaatgt gtcagtgata tcaaactgat ccacgatcaa atgctcaatg
     4021 ccaccctgta ttactccggc tctggtggct tggtgatgaa tacgatttcc tgtgtcgatc
     4081 tggctctgtg ggatctgttc ggcaaagtgg tcgggcttcc ggtttataaa cttttaggcg
     4141 gcgctgttcg tgatgagatt cagttctacg ccacaggtgc gcgtccggat ctggcaaaag
     4201 agatgggctt tatcggtggc aaaatgccga cgcactgggg gccacatgat ggcgatgcgg
     4261 ggatccgcaa agatgccgct atggtcgcgg atatgcgtga aaaatgcggt gaagatttct
     4321 ggttaatgct cgactgctgg atgagtcagg acgtgaacta tgcgaccaaa ctagcccacg
     4381 cttgcgcgcc ctataacctg aaatggatcg aagagtgcct gccgccacag cagtatgaag
     4441 gttatcgcga actgaaacgc aacgcgccag tcggaatgat ggtcaccagc ggtgagcacc
     4501 acggcacact gcaatctttt cgtacgcttt cagaaactgg tatcgacatt atgcagccgg
     4561 atgttggctg gtgcggtggt ttaaccacgc tggtggaaat tgccgcaatc gccaaatcca
     4621 gggggcaact ggtggtgccg cacggttcgt ctgtttactc tcaccatgcg gtgatcacct
     4681 tcaccaatac gccattcagc gaattcctga tgaccagccc ggattgttca acgatgcgtt
     4741 cgcagtttga cccgattctg ctcaatgagc cggttccggt gaatggtcgt attcataaat
     4801 cagtgcttga taaacccggt tttggcgtcg aactcaatcg tgactgcaat ttgaaacgcc
     4861 cctacagcca ctaatcactc cgggcgttgc tgtgacaacg gtaacgccca catattctaa
     4921 ggagcttttt atgagcaccg ctttgcttga cgccgtggtg aagaaaaacc gtgtgcgttt
     4981 aattccgttt atgttggcgc tgtatgtgct ggcgtttctc gaccgttcga atatcggttt
     5041 tgccaaacag acctaccaga ttgataccgg gttgagtaat gaagcttatg cgctgggagc
     5101 aggcattttc tttgtggtat atgcgtttct gggtgttccg gcgaatcttt tgatgcgcaa
     5161 actgggggcc agaacctgga ttggtacgac aacactgctg tggggatttc tttcggcagc
     5221 catggcatgg gccgatactg aagcgaaatt tctgatagtt cgcactctgc ttggtgctgc
     5281 ggaggccgga tttttccctg gtatgattta tctcacctcg caatggtttc cgcagcgtaa
     5341 tcgcgccagc attatggggc tgttctatat gggcgcaccg ctggcgttaa cactgggatc
     5401 accgctttcc ggcgcgctgt tggagatgca tggatttatg gggcatcccg gctggttctg
     5461 gatgtttgtg attgaaggat tgttggcagt cggtgctggg gtattcacat tcttttggct
     5521 tgatgacaca ccggagcagg cacgttttct gagtaaacaa gaaaaaacgt tgcttatcaa
     5581 tcaactggca agtgaagaac aacagaaagt gacttctcgg ctgagcgatg cgctgcgtaa
     5641 tggccgagtc tggcaactag cgattatcta cctgaccatt caggtggcgg tttacggatt
     5701 aattttcttc ctgccgaccc aggttgcggc attgctggga acaaaagtgg gctttacagc
     5761 gtcggtggtc accgccattc cgtgggttgc ggccttgttt gggacctggc ttattccgcg
     5821 ctattccgat aaaaccggcg aacggcgtaa tgtcgcagcg ctgacattac tggcggcggg
     5881 cattggtatt ggtctgtccg ggctgctttc tccagtaatg gcgatcgtag cgctgtgtgt
     5941 tgcagctatc gggtttattg ccgtgcagcc ggtgttctgg acgatgccga cacaactgct
     6001 ttccggtacg gcgctggctg cggggattgg ttttgtaaac ctgtttggtg cagtgggcgg
     6061 gtttattgcc ccgatcctgc gcgtgaaagc agaaacgtta tttgccagcg atgcggcagg
     6121 attactgaca ctggcagcgg tggcggtcat cggttcgctg attattttca ctctgcgtgt
     6181 aaatcgtact gttgcgcaga ccgacgtggc acatcattaa ataggttaag gaacacgatg
     6241 aacgcattat taaccaatcc ctttaaagaa cgttta
//
LOCUS       DAJVUN010000205         6275 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.206, whole genome shotgun sequence.
ACCESSION   DAJVUN010000205 DAJVUN010000000
VERSION     DAJVUN010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6275
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.206"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            244..585
                     /gene="raiA"
                     /locus_tag="OQQ76_003580"
     CDS             244..585
                     /gene="raiA"
                     /locus_tag="OQQ76_003580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HCS1969927.1"
                     /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE
                     PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK
                     DANFVEEVEEE"
     misc_feature    688..813
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01859"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Phe leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01859"
     gene            689..736
                     /gene="pheL"
                     /locus_tag="OQQ76_003581"
     CDS             689..736
                     /gene="pheL"
                     /locus_tag="OQQ76_003581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pheA operon leader peptide PheL"
                     /protein_id="HCS1969928.1"
                     /translation="MKHTPFFFAFFFTFP"
     gene            836..1996
                     /gene="pheA"
                     /locus_tag="OQQ76_003582"
     CDS             836..1996
                     /gene="pheA"
                     /locus_tag="OQQ76_003582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydratase"
                     /protein_id="HCS1969929.1"
                     /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR
                     PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH
                     SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN
                     TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK
                     FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQQQN
                     FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH
                     GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT"
     gene            complement(2039..3160)
                     /gene="tyrA"
                     /locus_tag="OQQ76_003583"
     CDS             complement(2039..3160)
                     /gene="tyrA"
                     /locus_tag="OQQ76_003583"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HCS1969930.1"
                     /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPI
                     YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV
                     IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG
                     KLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR
                     KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ
                     LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLEQG
                     DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ"
     gene            complement(3171..4241)
                     /gene="aroF"
                     /locus_tag="OQQ76_003584"
     CDS             complement(3171..4241)
                     /gene="aroF"
                     /locus_tag="OQQ76_003584"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroF"
                     /protein_id="HCS1969931.1"
                     /translation="MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKTI
                     SDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT
                     VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW
                     SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ
                     VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY
                     RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE
                     MTDALLREIHQDLNGQLTARVA"
     gene            4449..4814
                     /locus_tag="OQQ76_003585"
     CDS             4449..4814
                     /locus_tag="OQQ76_003585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2799 domain-containing protein"
                     /protein_id="HCS1969932.1"
                     /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG
                     SAIKDDDAFGDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVESASQ
                     LHEVWQKGADENASTIRLN"
     gene            4964..5482
                     /locus_tag="OQQ76_003586"
     CDS             4964..5482
                     /locus_tag="OQQ76_003586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HCS1969933.1"
                     /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR
                     WPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESP
                     TFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVTP
                     DVLMLARKKNDG"
     gene            5472..>6275
                     /gene="dgcN"
                     /locus_tag="OQQ76_003587"
     CDS             5472..>6275
                     /gene="dgcN"
                     /locus_tag="OQQ76_003587"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcN"
                     /protein_id="HCS1969934.1"
                     /translation="MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLT
                     LKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNIL
                     ASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSL
                     AVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFH
                     RFALDFNSLLDEMEEWQLRLQAKNTQLLRTALHDPLTGLANRAAFRSGIN"
BASE COUNT         1702 a         1604 c         1412 g         1557 t
ORIGIN      
        1 ccttgagctg ccgttttttt attctgttag ttgtgaaact gaagcgattt agtcactatc
       61 gatctcatca aatatggctc gctttgagat attcctcaag taaaaaaaca cctcttcctg
      121 cgatttctca caaaaaagat tcgttgacaa aaagtgacaa aattatgaga ttcccatcac
      181 acattttgac atcaggaacg gtatgctgaa ttcaccaaga cgggaagaca agaggtaaaa
      241 tttatgacaa tgaacattac cagcaaacaa atggaaatta ctccggccat ccgccaacat
      301 gtcgcagacc gtctcgccaa actggaaaaa tggcaaacac atctgattaa tccacatatc
      361 attctgtcca aagagccaca agggtttgtt gctgacgcca caatcaatac acctaacggc
      421 gttctggttg ccagtggtaa acatgaagat atgtacactg caattaacga attgatcaac
      481 aagctggaac ggcagctcaa taaactgcag cacaaaggcg aagcacgtcg tgccgcaaca
      541 tcggtgaaag acgccaactt cgtcgaagaa gttgaagaag agtagtcctt tatattgagt
      601 gtatcgccaa cgcgccttcg ggcgcgtttt ttgttgacag cgtgaaaaca gtacgggtac
      661 tgtactaaag tcacttaagg aaacaaacat gaaacacaca ccgtttttct tcgcattctt
      721 ttttaccttc ccctgaatgg gaggcgtttc gtcgtgtgaa acagaatgcg aagacgaaca
      781 ataaggcctc ccaaaccggg gggccttttt tattgataac aaaaaaggca acactatgac
      841 atcggaaaat ccattactgg cgctgcgaga gaaaatcagc gcgctggatg aaaaattatt
      901 agcattactg gcagagcggc gcgaactggc cgtcgaggtg ggaaaagcca aactgctctc
      961 gcatcgcccg gtacgagata ttgatcgtga acgcgattta ctggaaagat taattacgct
     1021 cggtaaagcg caccatctgg acgcccatta cattactcgc ctgttccagc tcatcattga
     1081 agattccgta ttaactcagc aggctttgct ccagcaacat ctcaataaaa ttaatccgca
     1141 ctcagcacgc atcgcttttc tcggccccaa aggttcttat tcccatcttg cggcgcgcca
     1201 gtatgctgcc cgtcactttg agcaattcat tgaaagtggc tgcgccaaat ttgccgatat
     1261 ttttaatcag gtggaaaccg gccaggccga ctatgccgtc gtaccgattg aaaataccag
     1321 ctccggtgcc ataaacgacg tttacgatct gctgcaacat accagcttgt cgattgttgg
     1381 cgagatgacg ttaactatcg accattgttt gttggtctcc ggcacgactg atttatccac
     1441 cattaatacg gtctacagcc atccgcagcc attccagcaa tgcagcaaat tccttaatcg
     1501 ttatcctcac tggaagattg aatataccga aagtacgtct gcggcaatgg aaaaggttgc
     1561 acaggcaaaa tcaccgcatg ttgctgcgtt gggaagcgaa gctggcggca ctttgtacgg
     1621 tttgcaggta ctggagcgta ttgaagcgaa tcagcaacaa aacttcaccc gatttgtggt
     1681 gttggcacgt aaagccatta acgtgtctga ccaggttccg gcgaaaacga cgttgttaat
     1741 ggcgaccggg caacaagccg gtgcgctggt tgaagcgttg ctggtgctgc gcaaccacaa
     1801 tctgattatg acccgtctgg aatcacgccc gattcacggt aatccatggg aagagatgtt
     1861 ttatctggat attcaggcca atcttgaatc agcggaaatg caaaaagcat tgaaagagtt
     1921 aggggaaatt acccgttcaa tgaaggtatt gggctgttac ccaagtgaga acgtagtgcc
     1981 tgttgatcca acctgatgaa aaggtgccgg atgatgtgaa tcatccggca ctggattatt
     2041 actggcggtt gtcattcgcc tgacgcaata acacgcggct ttcactctga aaacgctgtg
     2101 cgtaatcgcc gaaccagtgc tccaccttgc ggaaactgtc aataaacgcc tgcttatcgc
     2161 cctgctccag caactcaatc gcctcgccga aacgcttata gtaacgtttg attaacgcca
     2221 gattacgctc tgacgacata ataatgtcgg cataaagctg cggatcctga gcaaacagtc
     2281 gcccgaccat cgccagctca aggcggtaaa tcggcgaaga gagcgccaga agttgctcaa
     2341 gctgaacatt ttcttctgcc agatgcagcc cataagcaaa agtagcaaag tggcgcagag
     2401 cctgaataaa cgccatattc tgatcgtgct cgacagcgct aatacgatgc agccgagcgc
     2461 cccagacctg aatttgctcc agaaaccatt ggtatgcttc cggcttacgt ccatcacacc
     2521 agaccacaac ttgctttgcc aggctaccgc tgtccgggcc gaacatcggg tgtaacccca
     2581 ataccgggcc atcgtgcgcc gccagcatgg cctgtaatgg tccatttttc actgatgcca
     2641 gatcaaccag aatacaatct ttcggtaaag gcggtaattt gccgataact tgctcagtaa
     2701 cgtggattgg cacactaaca atcaccattc cggcatcggc aacaatatca gccgctcgat
     2761 cccagtcatg ttgctccaga atccgcacct gataacccga gagtgtcagc atcttctcga
     2821 acaggcgtcc catctgaccg ccaccgccga cgataaccac cggacgcagt gacggacaaa
     2881 gtgttttaaa tcctttgtcg ttttcactgg agtaagattc acgcatcacc cgacgcaaaa
     2941 catcctcaat cagatctggc ggtacaccca gagcttccgc ctctgcacga cgcgaggcca
     3001 acatagatgc ctcgcgctcc ggaacataaa taggcagtcc aaagcggctt ttcacctcgc
     3061 ccacttcagc aaccagttcc agacgcttcg ctaataaatt cagcagcgct ttatcgactt
     3121 catcaatttg atcgcgtaat gcggtcaatt cagcaaccat aataaacctc ttaagccacg
     3181 cgagccgtca gctgcccgtt cagatcctga tgaatttcac gcagcaaggc atcggtcatt
     3241 tcccagctaa tgcaggcatc ggttacggat acaccgtatt tcatttcact gcgcggttgc
     3301 tcagaagact gattgccctc gtggatatta ctttcgatca tcagaccaat aattgagcga
     3361 ttgccatctt tgatttgagc aaccacggat tctgccaccg caggctgacg gcgataatct
     3421 ttattggaat taccgtggct gcaatctacc atcagagacg ggcgcagtcc cgcctgttcc
     3481 atctcttttt cacattgcgc aacatccgca gggctatagt tcggcgcttt accaccgcgc
     3541 aggatgacat gcccgtccgg attcccctga gtttgtagca acgcaacctg ccctgcctgg
     3601 ttaatgccaa caaaacggtg cggctgggcg gcggcgcgca tagcgttaat tgctgttgcc
     3661 agactgccgt cggtgccgtt tttaaaacca accggcatgg aaagcccgga ggccatttca
     3721 cggtgagttt gcgattccgt tgtacgagca ccaattgctg accagctaaa cagatcgccc
     3781 aggtattgcg ggctattcgg atctaacgct tccgtcgcca gtggcagtcc catattcacc
     3841 agctcaagca gcaatttacg cgcgatctgc agcccggctt ctacatcaaa agagccatcc
     3901 atatggggat cgttaattaa ccctttccag ccgacagtgg tacggggttt ttcaaaatag
     3961 acgcgcatta ccagatagag gctatcgctg acctctgcgg caagggcttt aaatcgacga
     4021 gcatattcca gagcagtttc cggatcatga atggaacaag gaccacaaac taccagcaga
     4081 cgaggatcgc gcccggcgat aatatctgaa atggttttac gcgagtcagc aatctgggct
     4141 tcttgttgca ggctcaatgg aaaagcggcc ttcagttgtt ccggagtcat taaaacctgt
     4201 tcgtcggtaa tatgtacgtt attcagcgcg tctttttgca tgatggcgat cctgtttatg
     4261 ctcgtttgcg atagttgatc ctcagcgagg atgacgtaac gataacacac aaagtaaagt
     4321 tttcaatcca tatttcgtac gcttttcttt acacgaacaa tttactcgcg ctttgatgct
     4381 tatttcgtac aaataaattt acacctcctt taaaaacaat ccgctatgct ttgaaaaagg
     4441 agaaagaaat gatgaaaaag tttatcgccc ccttattggc tttactggtt agcggatgtc
     4501 agattgatcc ttatactcac gcgccaacct tgaccagcac cgactggtat gatgtcggta
     4561 tggaagatgc gatatcgggc agcgccataa aagatgacga tgcatttggc gattcacagg
     4621 cggatcgcgg tctatacctt aaaggatatg ccgaaggaca aaagaaaact tgccagaccg
     4681 attttactta tgcccgggga ctttccggta aaagctttcc tgccagctgt aacaatgttg
     4741 aaagtgccag ccaactgcat gaagtatggc aaaaaggggc tgatgaaaat gccagcacaa
     4801 tacgattaaa ttaattaaaa ccccacaaat aaattaaaca taagatttta ctcattgtgt
     4861 tttatttctc acattgatga cgatcgcatg aaaaaatgat attttaatga gcattctgaa
     4921 aaaatatcga tgcatttcga gcgaagaagg tggggatccc tgaatgcgtt tttctcaccg
     4981 actgttctta cttctgattc tcctgctgac gggagcacca atactcgctc aggagccttc
     5041 tgacgttgcg aaaaacgtgc gtatgatggt ttccggtatt gtcagttaca cccgctggcc
     5101 tgcgctatca gggccaccaa agttatgtat cttttcatct tcacgtttta gtaccgccct
     5161 acaagagaat gccgcgacat ctttgcctta tctgcctgtc atcattcaca ctcaacaaga
     5221 ggcgatgatt tcaggctgca atggttttta ttttggcaac gagtcaccga cattccagat
     5281 ggaattaacc gaacaatatc cgtcaaaggc gttattatta attgccgaac aaaataccga
     5341 gtgcattatt ggtagcgcct tttgtctgat catccacaat aatgacgtca gatttgccgt
     5401 aaacctggat gccttatcgc gtagcggtgt aaaggtcacc ccggatgtct taatgctcgc
     5461 acggaagaaa aatgatggat aacgataatt ctcttaataa gcgccccacg tttaaaagag
     5521 cattacgcaa catcagtatg accagcatat ttatcactat gatgctgatc tggttgctgc
     5581 tttccgtgac ctcggtgctg accctgaaac agtacgcgca aaaaaacctg gcactgacag
     5641 cagcaacaat gacttacagt ctggaagcag ctgtcgtttt tgccgatggc cctgcagcaa
     5701 ctgaaacact ggcagcgctg ggccagcaag ggcaattttc aactgcagaa gtacgtgata
     5761 agcagcaaaa tattctggcg tcctggcatt acacccgtaa ggatccaggc gatactttca
     5821 gcaatttcat aagccactgg ctcttccccg cccccatcat tcagccgatt cgtcacaatg
     5881 gtgaaaccat tggcgaagta cgcttaaccg ctcgcgacag ttcaatcagc cattttatct
     5941 ggttttcgct cgccgtactg accggttgta ttctgctggc atcaggcatc gcaattaccc
     6001 tcacccgcca tttgcacaat ggcctggtgg aagcgctgaa aaatatcacc gatgtcgtac
     6061 atgatgtgcg ttccaaccgc aatttttccc gacgagtttc tgaagaacgt atcgctgagt
     6121 ttcaccgctt cgctctcgac ttcaacagtc tgctggatga aatggaagag tggcagcttc
     6181 gtttacaggc caaaaatacg cagcttctgc gtaccgcgct acatgaccca ttaaccgggc
     6241 tggctaaccg cgcagcgttt cgtagcggca tcaat
//
LOCUS       DAJVUN010000206         6147 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.207, whole genome shotgun sequence.
ACCESSION   DAJVUN010000206 DAJVUN010000000
VERSION     DAJVUN010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6147
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.207"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(623..2332)
                     /locus_tag="OQQ76_003588"
     CDS             complement(623..2332)
                     /locus_tag="OQQ76_003588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858142.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
                     /protein_id="HCS1969935.1"
                     /translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
                     IQFKNKTAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
                     STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
                     LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
                     YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
                     YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGCSDIIQVYGKILNMCNLSQETILTL
                     LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
                     ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
                     LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
                     TNKDGIPGVFASVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
                     HFL"
     gene            complement(2764..3483)
                     /locus_tag="OQQ76_003589"
     CDS             complement(2764..3483)
                     /locus_tag="OQQ76_003589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector
                     phosphothreonine lyase"
                     /protein_id="HCS1969936.1"
                     /translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
                     QYPAYYFKVASNVPTYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
                     FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
                     QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
                     DGSERQEQMLREEPFYRLMIE"
     gene            complement(3608..4171)
                     /locus_tag="OQQ76_003590"
                     /pseudo
     CDS             complement(3608..4171)
                     /locus_tag="OQQ76_003590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            4155..4413
                     /locus_tag="OQQ76_003591"
                     /pseudo
     CDS             4155..4413
                     /locus_tag="OQQ76_003591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(4522..5100)
                     /locus_tag="OQQ76_003592"
     CDS             complement(4522..5100)
                     /locus_tag="OQQ76_003592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969937.1"
                     /translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNAC
                     HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
                     VSFVNREGKICHTAYVKSSDNSMAYYHANYSSIDKYITDMCGLICMRHIESTCIIFYM
                     LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
     gene            complement(5521..5758)
                     /locus_tag="OQQ76_003593"
                     /pseudo
     CDS             complement(5521..5758)
                     /locus_tag="OQQ76_003593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000544830.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            complement(5945..6147)
                     /locus_tag="OQQ76_003594"
                     /pseudo
     CDS             complement(5945..6147)
                     /locus_tag="OQQ76_003594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858395.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS91 family transposase"
BASE COUNT         1700 a         1374 c         1108 g         1965 t
ORIGIN      
        1 aagcttgata caactggtct ggtatataca gtttctttga gtgcggttac gtccacagag
       61 gtaacggtaa aagtaacccc ttgtcgggac cactccgacc gcgcacagag gcattttcat
      121 cgctgacagg ccgcattgcc tcgcagggct ggaggaggat cggtgatatc cggacgaccg
      181 taccggctta cgccgggctt cggcggtttt actcctctgc catgtgcaac aacggagtgc
      241 cgccttacat gccgctggcg cggcatgtcc tggtaacatt tttgttgata ccaccttccg
      301 gccttatcct gaccagtggg ctttcctggc atcgatgata ccgatgaacg cgcatgatat
      361 tgagccgacg atattacggg caactggaaa tactcaccct ctggatgtga cctttatcca
      421 tgaagaagat ttggccatac catggaaacc tgaacaatca tcagtttacg cccatgtaaa
      481 cccctacggg atatttgaac tcgatatgga aacaaggttg ccaatcgagg tggttgcctg
      541 aaagttggca gttacccggt cactacacct tgttggagtg aacatatcaa aaacaggtaa
      601 ttacacaatt taaattacag tctcataaaa aatgattaaa tctatttatt atttcaataa
      661 acgttttttt catcttcttt gaaaattgtt ctgctatagt atccggttcc agattgttct
      721 cttttattat tctacaatac tctaatattg tttctttgtc tctatttact acagatgcaa
      781 atacaccagg aataccatct ttattagttg cggacagcat ttcgaccaat cgtcttgtgg
      841 taaaactata gttttttaga atattacaaa aggcacgtat tgtttcggta tggccattat
      901 aaaatgccat aaaaagtcct gatgtaccgt tgggattttt tatccataat aattcatcta
      961 tatattcctg gtgagggggg agtattttta gtatatctcc atacgccata atggcctttg
     1021 tgtgcccatt ttgaagtgcc ataaacaacc catgctttac tttcaataat tctttaattt
     1081 gttcactact aagcattttc ttattaagca gacttccgaa catacgaata ctatctgcat
     1141 gtccattctg caatgcaaaa aataacccag gtaaatcatg gctgtctttc gcagctaata
     1201 gatataatct cttatcggaa gttaacgggg ttttaaagac tatttcccca taggctttta
     1261 ttgtgtctac atgtccgttc ataaaagaca tgcataaacc cggcacattg tttgccccta
     1321 ccgcagcaag caatgtaagt attgtttctt gactaagatt gcacatattt aatatcttac
     1381 catatacttg aataatgtct gaacatccgt tttgaagtgc tatataaaat gcaggagtac
     1441 catcagagct tctcgtggcc agaaggttca ccagtttaga ttgagaaatt tcaccatttt
     1501 tgtatttttc catcagtata aataatactt ctgtcagatt ctttgttatc gcatgatata
     1561 taactctgga attgatcaat tcatctggta aaagtttcac tgtgtttgtt agaggggaat
     1621 tatgcctatc ttcaaatatt acctgcccgg gttgctccag accataaatt ttccaataaa
     1681 aatcatcaaa aaaatcctta gcggataatt gactcagttc gaaatggcta tcacaagtaa
     1741 atacagtacg tttatgagta acagttcgat taggatcgaa aaactgaaca acccattttt
     1801 cactttcttg tacgcgcttt attttcaacc ctaacgccat ttggtggttt aatgtgcatg
     1861 ctgataatgt tctgacaaag tctccatttt ttttcatgtt ataaaaaaaa ttagtaataa
     1921 ctgttcccca ctttttattt tccacaaaat aaatataagc tggtgatttt gaaaaatctt
     1981 ccgttttttc caaacataca ttttttgcaa tagcatcagg ggtgctaaga agctgatagt
     2041 ttaccttccc atttgtttcc ataaaattca tttcccaata ggaagctagg tgacggcaaa
     2101 ctatttgtct tccatatata tcttttgcca ctccatttat atttaccttc acatttctct
     2161 tttctgaaaa ataaggtgct gttttattct taaactgaat tagttcactg gagtttgaga
     2221 ccctcataat agaacttgtt attgttctat tatctctgtt aacagacata tctgttgata
     2281 acgaattttt tgttgaaaat atactagatg aaaatgtttt atttaacggc atagaagaca
     2341 accatagaga tgttataata ctattagatt gcagttacta atagtaaaag cctccttaca
     2401 aggaggtagc ttattcagaa tgctcctata agatagcgag ctcgtcaacg atacagatga
     2461 tctgattata ttgtgcaaaa ggagaacagg aaaataggca ctggaaaaga tgaaggcctg
     2521 atgggagcat taactaatgc aaaatccgac aggttaatat cccgaaaagc aatcaaacga
     2581 ctcaaacagg agatgcacgc tgaagtggtg gacaactgtt cggatttcag atgagtagct
     2641 cagcagttta tgagccgaat gctctgtcac ggtcaggaat caggctgcat acgctgtgcc
     2701 aaatctaatc gtagttattc taaccagttt tcaagctaca aggtggtgta gctggcatct
     2761 tctctactct atcatcaaac gataaaatgg ttcctctcgt aacatttgct cttgcctttc
     2821 acttccatct cgatcgcttc gtagttcatt acgatagctg acatatttcc agtcttcagg
     2881 tctaacatct gacgccggat actccccggg agcgattttg cttcttaata gattagactc
     2941 gagacacatt ataaattgtc gtattttatg aagtaataaa gcactatatt gcgagcattc
     3001 ctgatctgat tttacatata gcgtaaactg agctcctatc cccacacgag attgctgaga
     3061 aactcgattc atatcagtta tcttccattt atctatagga ctgtcctctg aaaataataa
     3121 accagacaaa atttggaatg ccagaggaac ttgctcccta gctatactaa tatgaaactt
     3181 gtccccaaca aaatccccct tactctgagg attttcacga catgcatgaa taaacacatc
     3241 tccactatgg ttcacaatct ggaatccttg gtacatgaca gaaaaaaatt gacatatatc
     3301 agagtaagtt ggcacgttcg atgctacttt gaaatagtac gctgggtatt gccgtatttg
     3361 gttgtacaat atattgaagt tatttttcaa tctttcattc gcagaaagca tctgcggtat
     3421 ttcagacctc acaacattca aagaatctaa atttagtttt agacagggct tttttatggg
     3481 catagaaaac gtcctctata aaatagatat attatcttat attgattgtt tatcatcttt
     3541 tataaaacga tacattatat gtaatgtatg taagcgtaag ggtcttctcc gatcatggtg
     3601 ggaaggctta gaacgccata ttcagtttcc catagtggaa catcactccc agcttaaagc
     3661 gctcccggtt gcggtagccc ttggctttta ttctcagcag cctgatcttg ctgttcagtg
     3721 cttccgcatt tccgtttgat acgccatggc gcatggcgtt caggataccg tacaaccttt
     3781 tccctatcgt tttagccaca ttcttcatca tggggacgtc actgttggcc gccagcgaca
     3841 gccatctctg cctgtcgttg cgtctttcct cgctccatgg tctgctccag atatcctttg
     3901 ccagttcttt cagcgcccag cacaggctcg tcagcttcat ctgcgcacgc agccatatca
     3961 gcttttcctg cctggattcg gtcatccatt tatcgctgtg ctgccacagg aagcgagttc
     4021 cctttgcctg acgacgactt tcaacaggaa gatgcggatg ttcattctgg cgggttttat
     4081 ccaccacctc acccggttgt ttcgccacat gaaagcgatc gaaggctatt ttctcaaccg
     4141 cattgggtaa gtggatgcgc gctgctctta gtttgctgag ccagtttagc attgccttct
     4201 acatgaccga tgcctgagcc ggtataccga actttattgt cctcaaccag tcatgttata
     4261 agcaagaaat gcactcagcg gatagagcga cataatctga acctgcggac acatcttaag
     4321 cggcttaccc gcaaaaccat atgcttctca aagtctgatg atatgcacta caagatcatc
     4381 ggctggtatc tgacaatcaa ccaccaccac taaatctgcg tcacgacctg caactgagtc
     4441 tggttgaaca ggctgaggcc ctgctgaagc aacgcgaacc tctcgactct tgttggattt
     4501 taccaaatag tttttctaaa attaaacaca tttatataag ttctttgctg aacaaaacgc
     4561 agcccgccat cctttttcat tcataaattc agcaatggca gataaaactt tttcatcaag
     4621 catataaaaa ataatgcaag tagactcaat atgcctcata caaataaggc cgcacatatc
     4681 cgtaatatat ttgtcaatgc tgctataatt tgcatggtaa tatgccatgc tattatctga
     4741 tgattttaca tatgcagtat gacatatttt tccttcacga ttaacaaaac tgacaaaacc
     4801 actttcacca ggagtaatat ataaagatga atttaacgtg cgctcactaa tattcattaa
     4861 ttgttgaaat tcaatggaat agttttcagt taatgtatct attatcttgg ctttgtcttt
     4921 ctttgttatc tcattgtctt tttcggcaag aaaaattgcc actttatgac atgcattcag
     4981 ctcgttaatt ttacctgata aaactgcttt tcttaccaca tcgttgaact catcgatagt
     5041 gtgtttttta ttatatatat catgaaaaat atagcctaaa gacttaaacg agactttcat
     5101 tttatattct ccttaaatat taacaggata tatatatcac attttcctct atattttcag
     5161 aaaccagcta tcattttccc cattactggt acgtcgcttc agatatttcc gcagcaagcg
     5221 ataaccctgc gcactatgag gatgccattc attataatgt ttgaacacct tcgcgagact
     5281 actttactgc tgttaacacg tcaggttcga acataacact gatttaatca tatttcatcg
     5341 ttttgacgaa gttttctgcc attccatttt gcaccgccgt gtgtttgggg gcaaggccga
     5401 ccatctgtgt ttcattcgcc agatataagt gatgagatgg cattctccct ccttcacggc
     5461 agaagcattt tgaccgttta ggggatgcgg acgattttca tgcctgctaa gatactttcg
     5521 ttactgatgc tgtccgtttt ccaccatttc atcatcactg attggcgttg tgtttttggt
     5581 cagcactcca gctttacgtt tctcttttaa ccggtaactc tctcctttga tattcagcgt
     5641 gtagcagccg atctaggatc gctgttgcca gcacgtgatc tccgaacatt tctccccagt
     5701 ctgcgacccc tttgtttgac gtcagtatga tgctcgcttt ttcatatcga cagttcatcg
     5761 ataggaattt aaatccccaa aagattaaaa aagcaccgaa gaatgcgcgt ttattcaaca
     5821 caacctgatc atcaagtaat cggtatagac acttaatatt gcttacattg attgattcaa
     5881 tgtatctctg atggtttttt gctccgttcc cctcaacatg gacgcaactt cccctctgcg
     5941 actctcagcc gcaccaccgt attcgagcca gcggctcatg catcataacc tgctctgcca
     6001 gacggtaacc cctcttcagc cccgtaaacc gcatctgacc tccgcacagc tcgcacttca
     6061 gcgggtcaac cttcagtcac tgctgataca tccctctcct tgtgatttgc ctcgccgttt
     6121 ttctcactgt ctccgttatg gcgtaca
//
LOCUS       DAJVUN010000207         6128 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.208, whole genome shotgun sequence.
ACCESSION   DAJVUN010000207 DAJVUN010000000
VERSION     DAJVUN010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6128)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6128)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6128
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.208"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(61..678)
                     /locus_tag="OQQ76_003595"
                     /pseudo
     CDS             complement(61..678)
                     /locus_tag="OQQ76_003595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310943.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
     gene            complement(766..1308)
                     /locus_tag="OQQ76_003596"
     CDS             complement(766..1308)
                     /locus_tag="OQQ76_003596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1969938.1"
                     /translation="MKHSIIVVAVLSSVFMSAGIFAAEVDTGTLTIKGNIAESPCTFV
                     AGGDSVSINMPTVPTTVFDGKAKYSTYDGVVGVTSSMLKITCPKTIDGVKLSLITNEK
                     ILGNDKAISSSNDTVGYYLYLGDSSDVLDISAPFNIESYKTADGQYAIPFKAKYLKLI
                     DSGVASGTVNSSLVMRVAQD"
     gene            complement(1607..1888)
                     /locus_tag="OQQ76_003597"
     CDS             complement(1607..1888)
                     /locus_tag="OQQ76_003597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2574 family protein"
                     /protein_id="HCS1969939.1"
                     /translation="MNKYWLSGIIFLAYGLASPAFSSETATLTINGRISSPTCSMDVV
                     NNHLQQRCGQLLQRVETNYRASSTAKGVTTEVVTVGNNDKRKIVLNRYD"
     gene            complement(2151..3260)
                     /gene="apbC"
                     /locus_tag="OQQ76_003598"
     CDS             complement(2151..3260)
                     /gene="apbC"
                     /locus_tag="OQQ76_003598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HCS1969940.1"
                     /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW
                     MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG
                     INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ
                     RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY
                     LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE
                     NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRP
                     ESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRSV"
     gene            3392..5425
                     /gene="metG"
                     /locus_tag="OQQ76_003599"
     CDS             3392..5425
                     /gene="metG"
                     /locus_tag="OQQ76_003599"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HCS1969941.1"
                     /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH
                     EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE
                     NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE
                     VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK
                     MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV
                     SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKM
                     SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN
                     LASRNAGFINKRFDGVLASELADPQLYRTFTDAAEVIGEAWESREFGKAVREIMALAD
                     LANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN
                     TELTWDGIQQPLLGHKVNPFKALYNRIDMKQVEALVEASKEEVKAAAAPVTGPLADDP
                     IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ
                     ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDAGAKPGHQVK"
     gene            5566..>6128
                     /locus_tag="OQQ76_003600"
     CDS             5566..>6128
                     /locus_tag="OQQ76_003600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001615297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HCS1969942.1"
                     /translation="MRHFIYQDEKSHKFWAVEQQGNELHINWGKVGTNGQSQIKSFAD
                     AAAAAKAELKLIAEKTKKGYVENASANVHIPPITKATPEVETSPESKNQRPWLADDAV
                     IRLTDDINRFAFPHRSRPREINYLHKDGQIWQLIANNTRAYDPANNYRSYPENWQQAF
                     AELQMRVQGNQQTGSAQSDAALLWSFW"
BASE COUNT         1673 a         1458 c         1389 g         1608 t
ORIGIN      
        1 gtcatcgggc attatctgaa cataaaacac tatcaataag ttggagtcat taccccagtt
       61 gtttgcatta ttacttttga cattaacact ctgactttct aagggggcaa tcataatagt
      121 ttcataattg actttgacat tattagcttt gacatccgaa atcgtcaccc aattagctga
      181 gtcatttttt atcaccaatc cattgccact gcgatttatc agtaactttt taaaggtcgc
      241 tttattcacc ggagcaatac ccgccggccg gtaaaacaat ttgattctgt tttgcatcgc
      301 aaacttcagt gcattcttac cttcttgttc tggactattc ggtggaatat ccagaacatt
      361 aagataaaaa atactttcct tattactggg taatttatta ggcatgattt taatttttat
      421 ttgttgccca gaattggccg ctactttcac tactggtggc gttaacatga aaggaacctg
      481 aatcttttct ggcggcagag acgtgtcgcc atcatcaatc cacgcctgca tcagcgaaga
      541 gcggtttccc tgattcatca gttgtaccat gacctctttc tgctctgccg ggtaaatgat
      601 acgggtcccg aaaataacca ttccggcatg cacggggaat atcatagaag agatgagtaa
      661 agataataac cctttcatct taatgcctct tatatttatg ctggccgcca tgaatatggc
      721 ggccatttta acttactgaa aaaacaagat gattatttta aatatttaat cctgggcaac
      781 acgcataacc aatgaagagt taacagtacc agatgcaaca ccactgtcaa tcaacttcag
      841 atattttgcc ttaaacggta ttgcatattg tccatcagca gttttataac tttcaatatt
      901 aaatggtgcg gaaatatcca gtacgtcact gctatctccc aaatagagat agtatccaac
      961 tgtgtcatta ctactggata ttgccttatc attaccaaga attttctcgt tggtgatcaa
     1021 cgaaagtttt acgccatcaa tagtcttcgg acaagtaatt ttcagcatac tgctggttac
     1081 accaaccacg ccatcataag ttgaatattt cgctttacca tcaaatacag tggtgggtac
     1141 agtcggcata ttaatactga ctgaatcacc gccagcgaca aatgtacatg gtgattcagc
     1201 aatattacct ttaatggtta aagttccggt atctacttca gcagcgaaaa taccagcact
     1261 cataaataca gaagataaga cagcgacaac aataattgaa tgtttcatga tgcattcctt
     1321 aataagttta ttttgttttg ttaagagtct gtatctcttg gaaacaaatt tctcacatca
     1381 aaaaagttgc cgcaatgtaa acatattgtt ttgttgattt aaaacaaatt aactaatgcg
     1441 atataaatac aacaaataat tcgctataac aaacattttt gaaactgatt aattaccgta
     1501 aattaccgta aataacattc atgaggtgaa taaaaaagcc aaaatcattc ataggaatga
     1561 ttttggcttt ttaaatatgc ttaatgctta aaacggtgtt ggcaaattaa tcgtagcgat
     1621 ttaacacgat tttgcgtttg tcgttattac ccacagttac cacttctgtc gtaacgcctt
     1681 ttgcagtaga agaagcacga tagttggttt caactcgttg taacaactgc ccacaacgtt
     1741 gctgaagatg attattaaca acatccatac tgcatgtagg ggaactaatt ctgccattga
     1801 tggttaatgt tgcagtctct gaagagaacg cgggagaagc caatccatag gcaagaaaaa
     1861 taattcctga cagccaatac ttattcattg aacgttatcc ctgtagtaaa ggttatgcct
     1921 ggatagaatg agtgcataac aaactatagc tgtacatcca ctacacagcc acgaaggatg
     1981 ataatgaagc attgcctgta cgatcaatcg actttgtaga gtttcggacg aaggtccgca
     2041 gaatattcgc agtattaaat aagtgttcat taatgcggca aaaacaaata caccgcatca
     2101 atataacatc tctgcggtgt atgaagaata accagaatgg ttaataggca ttagaccgag
     2161 cggaaggaaa tctcgcctgg aatgacttca ccctgccagt agagctgagc tgcaacgcgg
     2221 tcagccagct ggcggtagat agcggtaaat tcgctctccg gacggctgat aaccgttggc
     2281 gtgcctttat cgagatcctc acgtaaggag atgtgtaacg gcatctgccc cagcagctgt
     2341 gtatggtatt tttcagccag tttctctgca ccaccggtac cgaaaatcgg ttcatggtga
     2401 ccacagttac tgcaaatatg cacactcatg ttctcgacaa taccgagcac cggaacctcg
     2461 actttctcga acatcacaat gccttttttc gcatcgatca acgcgatgtc ctgcggggtg
     2521 gtgaccacga ctgcaccagt tactggaatg ttttgcgcca gcgtcaattg aatgtcaccg
     2581 gtgcctggcg gcatatcaag caccagatag tcgagatccg gccacaaggt ttcctgcagc
     2641 atctgcatta acgccttgct cgccatcggt ccacgccaca ccatcgcatt gtcgtcagtg
     2701 accagataac caattgaatt ggttgccagg ccatgagaca taatcggtgc catatgggta
     2761 ccgtccggcg aagttggacg ctgattttct gcgcccagca tggtgggaat tgatgggccg
     2821 tagatatcgg cgtccagaat gccgactttc gccccttccg ccgccagtgc cagcgccagg
     2881 tttaccgccg tggaggattt acccacgccg cctttaccgg aactgaccgc aatgatgttc
     2941 ttcacgccat taatacccgg ctgattcttc acgcgtttta aggtggcgat attgtgcgac
     3001 agtttccagt cgatagcttt cgccccggtg atacgcagca gttcggcgct acattgctct
     3061 tttaactctt caaacgcgct atgccagacg aatggcataa ccagttccac atgcaacgtg
     3121 tcgtccatcc aggcgacatg gtgcaacgct ttcagcgtgg tgaggttatg cttcagggtt
     3181 gggtgctgaa aattggccag tgtcccggcg accattgcgc gcaaggcttc tggtgatttg
     3241 gcctgggatt gttcgttcat cccgactcct tttttgtata gataaaccat cagctgatag
     3301 tttacctgaa gaatatagag aagtacttac ttaacatttt cccatttggt actatctaac
     3361 cccttttcac tattaagaag taatgcctac tatgactcaa gtcgcgaaga aaattctggt
     3421 gacgtgcgca ctgccgtacg ctaacggctc aatccacctc ggccatatgc tggagcacat
     3481 ccaggctgat gtctgggtcc gttaccagcg aatgcgcggc cacgaggtca acttcatctg
     3541 cgccgacgat gcccacggta caccgattat gctgaaagct cagcagcttg gtatcacccc
     3601 ggagcagatg attggcgaaa tgagtcagga gcatcagact gatttcgcag gctttaacat
     3661 cagctatgac aactatcact cgacgcacag cgaagagaac cgccagttgt cagaacttat
     3721 ctactctcgc ctgaaagaaa acggttttat taaaaaccgc accatctctc agctgtacga
     3781 tccggaaaaa ggcatgttcc tgccggaccg ttttgtaaaa ggcacctgcc cgaaatgtaa
     3841 atccccggat caatacggcg ataactgcga agtctgcggc gcgacctaca gcccgactga
     3901 attgatcgag ccgaaatcgg tggtttctgg cgctacgccg gtaatgcgtg attctgaaca
     3961 cttcttcttt gatctgccct ctttcagcga aatgttgcag gcatggaccc gcagcggtgc
     4021 gttgcaggag caggtggcaa ataaaatgca ggagtggttt gaatctggcc tgcaacagtg
     4081 ggatatctcc cgcgacgcgc cgtacttcgg ttttgaaatt ccgaacgcgc cgggtaaata
     4141 tttctacgtc tggctagatg caccgattgg ctatatgggt tctttcaaga atctgtgcga
     4201 caagcgcggc gacagcgtaa gcttcgatga atactggaag aaagactcca ccgccgagct
     4261 gtaccacttc atcggtaaag atattgttta cttccacagt ctgttctggc cagcaatgct
     4321 ggaaggcagc aacttccgca agccgaccaa cctgtttgtt catggctatg tgacggtgaa
     4381 cggcgcgaag atgtctaagt ctcgcggtac ctttattaaa gccagcacct ggctgaatca
     4441 ttttgacgcc gacagcctgc gttactacta cactgcgaaa ctctcttcgc gcattgatga
     4501 tatcgatctc aatctggaag atttcgttca gcgcgtgaat gccgatatcg tgaacaaagt
     4561 ggttaacctg gcctcccgca acgcgggctt tatcaacaag cgttttgacg gcgtgctggc
     4621 aagcgaactg gctgacccgc agttgtacag aaccttcact gatgccgctg aagtgattgg
     4681 tgaagcgtgg gaaagccgcg aatttggtaa agcagtgcgc gaaatcatgg cgctggctga
     4741 tctggctaac cgctatgtcg atgaacaggc tccgtgggtg gtagcgaaac aggaaggccg
     4801 cgatgccgac ctgcaggcaa tttgctcaat gggcataaac ctgttccgcg tgctgatgac
     4861 ttacctgaag ccggtactgc cgaaactgac cgagcgcgca gaagcattcc ttaatacgga
     4921 actgacctgg gatggtatcc agcaaccgct gctgggccat aaagtgaatc cgttcaaggc
     4981 gctgtataac cgcatagata tgaagcaggt tgaagcactg gtggaagcgt ctaaagaaga
     5041 agtgaaagca gctgccgcgc cggtaactgg cccgctggca gatgatccga ttcaggaaac
     5101 catcaccttt gacgacttcg ccaaagttga cctgcgcgtg gcgctgattg aaaacgcaga
     5161 gtttgttgaa ggttctgaca aactgctacg cctgactctg gatctcggcg gcgaaaagcg
     5221 taatgtcttc tccggcattc gttctgctta cccggatccg caggcactga ttggtcgtca
     5281 caccattatg gtggctaacc tggcaccacg taaaatgcgc ttcggtatct ccgaaggcat
     5341 ggtgatggct gccggtcctg gcgggaaaga tattttcctg ctaagcccgg atgctggtgc
     5401 taaaccgggt catcaggtga aataatcccc cttcaaggcg ctgcatcgac agcgcctttt
     5461 ctttataaat tcctaaagtt gttttcttac gattttgtct ctctctaacc cgcataaata
     5521 ctggtagcat ctgcattcaa ctggataaaa ttacagggat gcagaatgag acactttatc
     5581 tatcaggacg aaaaatcaca taaattctgg gcggttgagc agcagggaaa cgagctgcat
     5641 atcaactggg gcaaagtcgg cactaacggg caaagccaga taaaaagttt tgcggatgct
     5701 gcggcagcgg caaaagcgga gcttaagctg atcgcagaga aaacgaaaaa aggctatgtg
     5761 gaaaatgctt cagcaaacgt gcatatcccc cccattacca aagccactcc tgaagttgaa
     5821 acttcccctg agagtaaaaa ccaacgcccc tggctggctg atgatgcggt cattcggcta
     5881 actgacgata ttaatcgatt tgcttttcct catcgctctc gccccagaga gatcaattat
     5941 ctgcacaaag atggtcaaat atggcagctc atcgcgaata acaccagggc atatgatccc
     6001 gccaacaatt accgttctta tccagaaaac tggcagcagg cttttgctga gttacaaatg
     6061 cgagttcagg gtaatcaaca gacagggagt gcacaatctg atgcagcatt gctctggagt
     6121 ttctggaa
//
LOCUS       DAJVUN010000208         6086 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.209, whole genome shotgun sequence.
ACCESSION   DAJVUN010000208 DAJVUN010000000
VERSION     DAJVUN010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6086
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.209"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(250..585)
                     /gene="iraM"
                     /locus_tag="OQQ76_003601"
     CDS             complement(250..585)
                     /gene="iraM"
                     /locus_tag="OQQ76_003601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HCS1969943.1"
                     /translation="MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFT
                     LTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECLNNRCTLQIC
                     PYGLKQQSP"
     gene            846..2711
                     /locus_tag="OQQ76_003602"
     CDS             846..2711
                     /locus_tag="OQQ76_003602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HCS1969944.1"
                     /translation="MAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGAVISATSNPEYYFVVVLAGQSNGMSYGEGLPLPGTYDRPDPRIKQLARRST
                     VTPGGAACKYNDIIPADHCLHDVQDMSRLNHPKADLSKGQYGTVGQGLHIAKKLLPFI
                     PANAGILLVPCCRGGSAFTTGADGTYSDASGASENSTRWGVDKPLYKDLIGRTKAALE
                     KNPKNVLFAVVWMQGEFDFGGTPANHAAQFGALVDKFRADLADMAGQCVGGSAGGVPW
                     ICGDTTYFWKQKNESTYQTVYGSYKNKTEKNIHFVPFMTDENGVNVPTNKPEEDPDIP
                     GIGYYGSKWRDSSATWTSQDRASHFSSWARRGIISDRLATAILSCAGKSSAFVNGTAG
                     VVVPDRPVTTSESVIFYDAKKATDNQLKPYGWDGMYGRRTLVDDSGNKALRIEKNNSA
                     KSWSMYCDIAADKAKLLLEKGGEIAVRFKIPENVNLETTRNKYAFGLYWRIAEWPGEG
                     GEGHLSSFFVQTDKASINVAYHHTVNQQKELGTFGAFDHDWHTLAFKFKGSNSINVTP
                     VLDGVDGQAFDLVKWANTANGLNRFVITDITGSAETYPVLIDTVEVKANKAGAAA"
     gene            2850..3032
                     /locus_tag="OQQ76_003603"
     CDS             2850..3032
                     /locus_tag="OQQ76_003603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001304601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HCS1969945.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWCRQIDKRAAEKI
                     SASQSAGSKPEEPVTP"
     gene            2956..3303
                     /locus_tag="OQQ76_003604"
     CDS             2956..3303
                     /locus_tag="OQQ76_003604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HCS1969946.1"
                     /translation="MIKGPLRKSAPVSQPEANPKNPLLLNNPFQRENPMSEITSLVTA
                     EAVKEVLRSEEVRSALKQKLRQNLESRLDAEVDAILDELLGVAAVPEPEGIAGDGSAS
                     DGGEPTPDSDMMM"
     gene            3380..3595
                     /locus_tag="OQQ76_003605"
     CDS             3380..3595
                     /locus_tag="OQQ76_003605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II holin family protein"
                     /protein_id="HCS1969947.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            3600..3944
                     /locus_tag="OQQ76_003606"
     CDS             3600..3944
                     /locus_tag="OQQ76_003606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HCS1969948.1"
                     /translation="MKKKYELVVKGINNYPNKITVTVALEIGGYPSLLLPDVAISLDR
                     TEDATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLPEKRPVILEAQDVLITYRGKLPG
                     IITGSLKTPPLA"
     gene            3995..4528
                     /locus_tag="OQQ76_003607"
     CDS             3995..4528
                     /locus_tag="OQQ76_003607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1969949.1"
                     /translation="MNTKIKYGLSAAVLALIAAGAPAPEILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDSKPVVPGMKLSKEKCDQVNAIERYKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYRRINAGDRRGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VSRRDQESALACWDIDR"
     gene            4685..4867
                     /locus_tag="OQQ76_003608"
     CDS             4685..4867
                     /locus_tag="OQQ76_003608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310767.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969950.1"
                     /translation="MAKYKRILLRLTMKNGLELKAPVTDDISRALAFAIKWVAVGVAV
                     SPMLYGLAKLVIALKS"
     gene            5016..5483
                     /locus_tag="OQQ76_003609"
     CDS             5016..5483
                     /locus_tag="OQQ76_003609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001082570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HCS1969951.1"
                     /translation="MNRMLSAFTVILLVVCGALWLATDHYRDNAITYKAQRDKKAREL
                     ELANATITDMQQRQRDVAALDARYSRELADARAENETLRADVAAGRKRLRINATCSGT
                     VREATGTSGMDNATGPRLADTAERDYFTLRERLMTMQKQLEGAQEYIRTQCIN"
     gene            5507..5731
                     /locus_tag="OQQ76_003610"
     CDS             5507..5731
                     /locus_tag="OQQ76_003610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969952.1"
                     /translation="MKKLLVTVKPFQGTIPFRILQRGRVLVEGSFSGKCTQLHSRTFQ
                     VNATNEELTVECTMNAAKCRMVSAALQPVC"
BASE COUNT         1564 a         1291 c         1700 g         1531 t
ORIGIN      
        1 atgtctcaca attcaggcgg ttgactgttg tctggtttgc ggggagtttg ttaaaagaaa
       61 ctggcatggt gaatccccct gtgcggaggg gcaatcagcg agtaggtata tgggataatc
      121 gcagattcag gtgctggtac tgaattcacc gggaggcacc cggcaccatg caatggcaca
      181 tagcgccact ctccagcccc tctccggagg ggctgtttat attgattttg tcagatgtga
      241 gtaaactcct tatggacttt gttgttttag cccataagga catatttgca gagtgcaacg
      301 gttattaagg cattcattca atacgttatc tgtatttgta gggcattcct ggctgttttt
      361 gattaaattc cagaatgttt tattgaatgg tactacgttg taaatggtta caggtagcac
      421 tttgttattg agcatgatgc ctgtgtgagt cagtgtaaat atactttcag gaggtaagaa
      481 agcatccgat tgataccaga ttattaattt tattttactc catatgactg aaaaagatat
      541 tccgcatgat ggctggataa ctgtatcaat cacaatccac ttcatttggt ttccttgttt
      601 atgcattgct ggtgatgttc tgaaaagtat aaatgatatt tttgaatgta aaccatagag
      661 cagaattatt tttctgatgt tgtttattgt ttatttaaat gcagggtggt ttatatctcg
      721 tcttgtagtt tatccatgca tatctgcttg atgatgaggt ttttatttaa ggtatggttt
      781 tgtgtttttt ctgtattaca tgtcaggtat tttaaagaat catttttcag atggtggaaa
      841 gaaccatggc atttaaacac tatgatgttg tcagggcggc gtcgccgtca gatcttgcgg
      901 aaaagctgac acataaactg aaagagggct ggcagccgtt tggtagtccg gtggccataa
      961 ccccttatac tctgatgcag gcgattgcag cagaaggtgc agtaatcagc gccaccagca
     1021 acccggagta ttactttgtt gtggttctgg cagggcagtc aaacggcatg tcgtatggtg
     1081 aaggccttcc gctgccgggg acatatgacc gtccggaccc gcgtattaag caactggcgc
     1141 gtcgcagtac ggtgacaccg ggcggtgcag catgcaaata taacgacatc attccggcgg
     1201 accattgtct gcatgatgtg caggacatga gccgtcttaa ccatccgaaa gcggacctgt
     1261 caaaggggca gtacggaacc gtggggcagg ggctgcatat cgccaaaaaa ctgctgccgt
     1321 ttataccggc gaatgcgggc attctgctgg ttccgtgctg tcgtggtggt tcagcgttca
     1381 ccaccggagc tgatggcaca tacagtgacg cgagtggtgc ctcggagaat tcaacccgct
     1441 ggggtgtgga caagccgctg tataaggacc ttatcggtcg aacaaaagcg gcactggaga
     1501 agaacccgaa aaatgtgctg tttgccgtgg tgtggatgca gggggaattt gattttggcg
     1561 gtacgccggc aaatcatgcc gcacagtttg gtgcgctggt tgataaattc cgtgcagacc
     1621 tggcggatat ggcaggccag tgcgtcggtg gctctgctgg cggtgttccc tggatatgcg
     1681 gggacacgac gtatttctgg aagcagaaga acgaatccac gtaccagacg gtgtacggca
     1741 gctataaaaa taaaacggaa aagaatatcc atttcgtacc gttcatgacc gatgagaacg
     1801 gggtgaatgt gccgacgaac aaaccggaag aagacccgga cattccgggt atcggttatt
     1861 acggttcgaa atggcgtgac agctcagcca cctggacgtc acaggacagg gcgagccatt
     1921 tcagttcatg ggctcgccgt gggattattt ccgaccgtct ggcaacggcg attctgagct
     1981 gcgcgggtaa gtcttctgcg tttgttaatg gtactgccgg ggtggttgtt ccagacaggc
     2041 cggttaccac ctcagagtct gtaatttttt acgatgccaa aaaagctaca gacaatcagc
     2101 tgaaacctta tggctgggac ggtatgtatg gcagacgcac actggttgat gacagcggca
     2161 ataaagctct gcgaattgag aaaaataaca gcgcgaaatc ctggtcaatg tactgtgata
     2221 ttgctgcaga caaggcaaaa cttttactgg aaaaaggcgg ggaaattgct gtccggttta
     2281 aaatccccga aaacgtcaat cttgagacaa ccagaaacaa gtatgccttt ggtttgtact
     2341 ggcgaatagc ggaatggccg ggtgagggtg gtgaaggcca tctgagttct ttctttgtcc
     2401 agacagataa agccagtatt aatgttgcat accatcatac agttaatcaa caaaaagaac
     2461 ttggcacgtt tggcgcattc gaccatgact ggcatacgct tgcatttaaa tttaagggca
     2521 gtaacagcat taatgttact ccggtgcttg atggtgtgga tggacaggcg tttgacctgg
     2581 tgaaatgggc caatactgct aatggactca acaggtttgt cattacggat attacaggta
     2641 gtgcagaaac ctaccctgta cttattgata cggtggaagt taaagcaaac aaagctggag
     2701 cagccgcata attgctaaaa aaagccgcca gcggcaggaa tggaagctgg cggaggtaat
     2761 cccaatggag aatgtaaaga aaagatgctt tcgtacattg gtttttaaat gaaaacaatt
     2821 ctcattgtca accataacgg taagaaatta tgacatttat tcatcaggtg atgctgtact
     2881 tctgtacggc ggtctgtgtg ctgtatcttc tttcgggtgg gtacagggct gtgcgcgatt
     2941 tctggtgcag gcagattgat aaaagggccg ctgagaaaat cagcgccagt cagtcagccg
     3001 gaagcaaacc cgaagaaccc gttactcctt aacaacccct ttcagcgaga aaatcccatg
     3061 tcagaaatca catccctggt cactgcagag gcagtgaagg aagtcctgcg ctctgaagaa
     3121 gtccggagcg cactgaaaca gaaacttcgc cagaatcttg agtcgcgtct tgatgcagaa
     3181 gtggatgcca ttctggatga gctgctgggc gtagcagcgg ttcctgagcc ggaaggtatc
     3241 gcgggtgacg ggagtgcttc agatggcggt gaacctacac ctgacagcga catgatgatg
     3301 taagcatgcg caagggacca tcggtgtgtg ccggtggtct ttatattgtt gtgagcttcc
     3361 ggattgcggg agacggggta tgtaccagat ggaaaaaatc acaacaggtg tgtcatacac
     3421 cacgtcagcg gtgggaacgg gctactggtt cctgcagttg ctggacaggg tttccccgtc
     3481 tcagtgggcg gcaataggcg tgctggggag tctgttgttt gggctgctga catatctgac
     3541 taacctgtat ttcaaaatca gagaggaccg tcgtaaggcg gcgcggggag agtaaagcga
     3601 tgaagaaaaa atacgaactg gttgttaaag ggataaataa ttacccgaat aagattactg
     3661 ttactgtggc actggaaatt ggtgggtatc cgtcactgtt gttgccagat gtggcgatta
     3721 gtcttgaccg tactgaagat gccacgctgg agttttacga agctgaggcg aaaaagcagg
     3781 cgaagcagtt tttcatggat gttgctgccg ggttatgtga aggggatggt ccgttgccgg
     3841 aaaagcgccc cgtaatttta gaggcgcagg atgtgttgat aacctacaga ggaaaactac
     3901 cgggaataat tacgggttct ctgaagactc caccgctggc ctgaagactt aacatatcca
     3961 gggatttgaa atcgataaac cctgataaat atccatgaac accaaaatca aatacggcct
     4021 gtcggctgcc gttctggcgc tgattgccgc aggtgcgcct gcgcctgaaa tcctcgacca
     4081 gtttctggat gaaaaggaag gtaaccacac cacggcatac cgtgatggcg cgggtatctg
     4141 gaccatctgc cgcggtgcca tcctggtgga tagtaaacct gtcgtcccgg gcatgaagtt
     4201 gtcgaaggaa aaatgcgacc aggtcaacgc cattgagcgt tataaggcgc tggcatgggt
     4261 ggagcgcaat attaaagtgc cgctgaccga accccagaaa gcgggtatcg cgtcattttg
     4321 tccctataac attggccccg gtaagtgttt cccgtcgacg ttttacagac ggattaatgc
     4381 tggtgaccgc aggggagcat gcgaagcgat tcgctggtgg attaaggacg gtggcagaga
     4441 ctgccgtatc cgctcaaata attgctacgg tcaggtatcc cggcgagacc aggaaagtgc
     4501 gctggcgtgc tgggacatcg acagataagc agaatatttt gctgaaaaat aaggcatgag
     4561 cacgcggacg gataacacga aatcctgcga actggcgaaa cgtaagtgaa taaaagtaaa
     4621 aaccccgttt gttggcacca agcggggttt tgtgtttctg accttgagta aggcaaggga
     4681 gaacatggcg aagtataaac gaattctgtt gaggttgacc atgaaaaacg gccttgaact
     4741 gaaagcgcct gtaactgatg acatcagcag agcactggct tttgccatta agtgggtggc
     4801 ggtcggtgtt gctgtgtccc cgatgctgta tgggctggca aaactggtca ttgcgttgaa
     4861 atcgtgaagg gaggattaag catgtcagac aaactcataa cgctggcgaa gatcctctgt
     4921 gtaattgtcg gcatttcatt ttcactaatg ctggttgctc tttttctttc catggcctgg
     4981 atgatgttgt cttcgtcggg gctgctgggg tgaacataaa ccgaatgctt tccgcgttta
     5041 ccgttattct gctggtggtc tgtggtgcgc tgtggctggc aacagaccat taccgtgata
     5101 acgccatcac ctacaaagcg cagcgcgata aaaaagccag agagctggag ctggcaaacg
     5161 caaccattac tgacatgcag cagcgccagc gtgatgttgc tgcgcttgat gccagatact
     5221 caagggaatt agccgatgcg agagctgaaa atgaaactct gcgtgctgat gttgccgctg
     5281 gtcgtaagcg cctgcggatc aacgccacct gctccggtac cgtgcgtgaa gccaccggca
     5341 cctccggaat ggataatgca accggccccc gactggcaga caccgctgaa cgggattatt
     5401 tcaccctcag agagcggttg atgacaatgc agaagcaact ggaaggggcg caggaatata
     5461 tccgcactca gtgtattaac tagtattttt gttatccgga gaatgcatga agaaattact
     5521 ggtaaccgta aagccttttc agggaacaat tccgttccgt attttgcagc gtggtcgtgt
     5581 tcttgttgaa ggttcgttca gtggtaaatg tacgcaatta cactcccgga cctttcaggt
     5641 gaatgccacg aatgaagagc taaccgttga gtgtacgatg aatgccgcta aatgccgcat
     5701 ggtatccgct gcattacagc cagtgtgttg agcgacctta ttaaccatgc gcggtattgt
     5761 cgccgtatcc ccgcattaac agagaccgca gcccgaccgg gagactcctc tgcgcgagtg
     5821 tgcggggata atcaaaaacg atacacaccg gggtttaccg cgttaacgga gcgcggcgtt
     5881 gtcccctcat ggtcgctggt ccggtgcgat ggtggaagaa accggacgat gtgttacctc
     5941 gcaagctctg ttatgtcatg tgtctgattt gtgatttaag tcggataatt gtcgttgcca
     6001 ttaagcagag gattgatgac cgacagggtg gcattgttag aataagactt attcttatct
     6061 gtgccgggaa tgaaaatgaa aagaaa
//
LOCUS       DAJVUN010000209         6053 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.210, whole genome shotgun sequence.
ACCESSION   DAJVUN010000209 DAJVUN010000000
VERSION     DAJVUN010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6053
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.210"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(24..392)
                     /locus_tag="OQQ76_003611"
     CDS             complement(24..392)
                     /locus_tag="OQQ76_003611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969953.1"
                     /translation="MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYIC
                     VNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVD
                     GKRSGKINQITTKMLFMCRE"
     gene            912..1607
                     /gene="minC"
                     /locus_tag="OQQ76_003612"
     CDS             912..1607
                     /gene="minC"
                     /locus_tag="OQQ76_003612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HCS1969954.1"
                     /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLK
                     HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK
                     EKAPRPAPAPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD
                     GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL
                     QLVENALTVQPLN"
     gene            1631..2443
                     /gene="minD"
                     /locus_tag="OQQ76_003613"
     CDS             1631..2443
                     /gene="minD"
                     /locus_tag="OQQ76_003613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HCS1969955.1"
                     /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR
                     NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV
                     AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL
                     ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL
                     RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG"
     gene            2447..2713
                     /gene="minE"
                     /locus_tag="OQQ76_003614"
     CDS             2447..2713
                     /gene="minE"
                     /locus_tag="OQQ76_003614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HCS1969956.1"
                     /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK
                     DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK"
     gene            complement(3192..3311)
                     /locus_tag="OQQ76_003615"
     CDS             complement(3192..3311)
                     /locus_tag="OQQ76_003615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001131457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HCS1969957.1"
                     /translation="MPLSYAGYHHFIMMSLVSGEHNTPALSLQDESPGLVPAG"
     gene            complement(3272..3457)
                     /locus_tag="OQQ76_003616"
     CDS             complement(3272..3457)
                     /locus_tag="OQQ76_003616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969958.1"
                     /translation="MSRRYSSATITLVILFCRRPHCRKISVRQYYLKRVIFYPTTLQR
                     TAFKKCLFLMRDIIISS"
     gene            3558..3731
                     /locus_tag="OQQ76_003617"
     CDS             3558..3731
                     /locus_tag="OQQ76_003617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969959.1"
                     /translation="MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIED
                     EIIVCATYLIPDI"
     gene            3733..4077
                     /locus_tag="OQQ76_003618"
     CDS             3733..4077
                     /locus_tag="OQQ76_003618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415690.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HCS1969960.1"
                     /translation="MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNG
                     VNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVI
                     GGTGGAILGKMK"
     gene            4081..4416
                     /locus_tag="OQQ76_003619"
     CDS             4081..4416
                     /locus_tag="OQQ76_003619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmgD family protein"
                     /protein_id="HCS1969961.1"
                     /translation="MMMKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEM
                     AKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAID
                     DTMRAIGKK"
     gene            complement(4473..6053)
                     /locus_tag="OQQ76_003620"
                     /pseudo
     CDS             complement(4473..6053)
                     /locus_tag="OQQ76_003620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707067.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1663 a         1395 c         1384 g         1611 t
ORIGIN      
        1 tagaacataa tgtaaacaag gcatcactca cgacacataa ataacatctt tgtggtgatt
       61 tgattgattt ttccactccg cttaccatcc acaccaaaat aacgatcatc acgacataat
      121 ttttctttaa catcgcaaaa tacaccgtta gcgaatgtaa attcgctggg atcgtagcct
      181 tgtaatgatt gtaagttttc agcggctttt tcgccgagat atttccttgt taactctggg
      241 gaaatgccat ctgagttcac acaaatatac gggtcgcaaa caacgccgca cgccggagat
      301 tgaagtccgc cagcgtcatg tccagacgcc attgatgaga acatcatccc cacacctgac
      361 aatccgatat aaaaaatacg catcatattc atagcacatc ctgataatcc aaccgtacaa
      421 cacttatgct catttcatca tcaatccgta atcaaaaccg ctgacctgga cgagttacga
      481 tgacctgaca gaagtatcag acgtcttctg cggtttctat gatagagcaa ttctgtggcg
      541 gatattaaga taacgggtat ctgttcttta atgatgctgc aaaaaatgga aagttaagaa
      601 agcctggcgt ggtgaaaaaa tacacttgcc tcaatactgg atatttaaac aggtctggag
      661 atgctgtcac gattagggtg cggaaaaagg aagcgtaaat aagaacaatc aaaagtacga
      721 cggcaatggg ttgattgaca agggtatttt ttaagctatg aatcagcgcc atttatcaca
      781 gaatagactt ttactctgaa taaatgggag ggtgacttgc ctcaatataa tccagactat
      841 aacatgcctt atagtcttcg gaacatcatc gcgggctggc gatgattaat agctaattga
      901 gtaaggccag gatgtcaaac acgccaatcg agcttaaagg cagtagcttc actttatctg
      961 tggttcatct gcatgaggca gaacctaagg ttatccatca ggcgctggaa gacaaaatcg
     1021 ctcaggcccc cgcattttta aaacatgccc ccgttgtact caacgtcagt gcactggaag
     1081 acccggtaaa ctggtcagcg atgcataagg cggtgtcggc aaccggtttg cgggttattg
     1141 gcgtaagtgg ctgcaaagat gcgcaactta aagccgaaat tgaaaagatg gggctgccta
     1201 tcctgacgga aggaaaggaa aaagcgccgc gtccagctcc cgcaccacag gctccagcgc
     1261 aaaatacaac gccggtcaca aaaacgcgtt taatagatac cccggtgcgt tccggtcagc
     1321 gtatttatgc tccacaatgt gatctgattg ttacaagcca cgttagcgct ggggccgaat
     1381 tgattgccga tgggaacatt catgtctatg gcatgatgcg tggtcgtgcg cttgcagggg
     1441 caagtggtga ccgggaaacg caaatatttt gtacgaacct gatggcggaa ctggtgtcca
     1501 tcgcaggtga atactggctg agtgatcaaa tcccagcaga attttatggc aaagcggcgc
     1561 gactgcagtt agtcgaaaac gctttgaccg ttcaaccgtt aaattgatcc ctttttaaca
     1621 aggaatttct atggcacgca ttattgttgt tacttcgggc aaagggggtg ttggtaagac
     1681 aacctccagc gcggccatcg ccactggttt ggcccagaag ggaaagaaaa ctgtcgtgat
     1741 agattttgat atcggcctgc gtaatctcga cctgattatg ggttgtgaac gccgggtcgt
     1801 ttacgatttc gtcaacgtca ttcagggcga tgcaacgcta aatcaggcgt taattaaaga
     1861 taagcgtact gaaaatctct atattcttcc ggcatcgcaa acacgcgata aagatgccct
     1921 cacccgtgaa ggggtcgcca aagttcttga tgatctgaaa gcgatggatt ttgaatttat
     1981 cgtttgtgac tccccggcag ggattgaaac cggtgcgtta atggcactct attttgcaga
     2041 cgaagccatt attaccacca acccggaagt ctcctcagta cgcgactctg accgtatttt
     2101 aggcattctg gcgtcgaaat cacgccgcgc agaaaatggc gaagagccta ttaaagagca
     2161 cctgctgtta acgcgctata acccaggccg cgtaagcaga ggtgacatgc tgagcatgga
     2221 agatgtgctg gagatcctgc gcatcaaact cgtcggcgtg atcccagagg atcaatcagt
     2281 attgcgcgcc tctaaccagg gtgaaccggt cattctcgac attaacgccg atgcgggtaa
     2341 agcctacgca gataccgtag aacgtctgtt gggagaagaa cgtcctttcc gcttcattga
     2401 agaagagaag aaaggcttcc tcaaacgctt gttcggagga taagttatgg cattactcga
     2461 tttctttctc tcgcggaaga aaaacacagc caacattgca aaagaacggc tgcagattat
     2521 tgttgctgaa cgccgtcgca gcgatgcaga accgcattat ctgccgcagt tgcgtaaaga
     2581 tattcttgag gtcatttgta aatacgtaca aattgatcct gagatggtaa ccgtacagct
     2641 tgagcaaaaa gatggcgata tttctattct tgagctgaac gtgaccttac cggaagcaga
     2701 agagctgaaa taagcccgct gtaaaaacgc atttatcttc aaggcagagt catttctgcc
     2761 ttgagttttt catccctctc atccacgttg tggtaaagcg gcgagtattc ttgctgatac
     2821 tcctcattgc tatttccacc tcccccttta caccttaagg ctgttcccac gcacagaaca
     2881 aaatgtttat gcctggttga gtaaataacc tcattgttag tgtgtataca ctgggggatg
     2941 ataaccccgc aatttcatta ttcattgttc tcccatagga tgaggtttcc cgccgtaact
     3001 ggcgggcttt ttttgcccca gaattttccc ttttagcccc ctgtaaacga aaactgcgcc
     3061 gaagcgcagt ttaatcgttg atggtcagaa cgaccagttc acgatatata ctgcgggtat
     3121 cgactgattt cgattccatg ccattggata aatgatagta gcgtctaagt gacctaagct
     3181 ctgctgcaac atcagcccgc aggcaccaga ccaggggatt catcctgaag agacagcgca
     3241 ggtgtattgt gttcaccact caccaaagac atcatgatga aatgatgata tcccgcataa
     3301 gaaagaggca ttttttaaac gcagtgcgct gaagtgtagt tggataaaaa atcactcttt
     3361 tcagataata ctgtcgtacg cttatctttc gacaatgagg ccgtcggcaa aataaaatga
     3421 ctaatgtaat cgttgctgat gaatatcttc tgctcacata aaaatcacac aataatattg
     3481 ataaatcaga ttatcttacc tttacaacat tgcgttaaca gtcaatgaca cttcttgaat
     3541 aaaaatattg ccaatcaatg agttattcct catttaagat tattctcatt cacgtaaaaa
     3601 acataattcc tatcatcaca gccacgctca ttttgaatta tctgaataat agcgagcgtt
     3661 ctttagttaa gcagatctta attgaagacg aaattattgt gtgtgcaact tacttaatac
     3721 cggacatcta agttgaagaa aaaaatactt gccttcgggc ttatctcagc attgttctgc
     3781 tccacgccag cgatggcgga tatgaatcgc accacgaaag gtgcattgct aggcgcaggc
     3841 gttggtttac ttactggcaa tggtgttaat ggcgtactga aaggtgcagc tgttggcgct
     3901 ggtgttggtg cagtaacaga aaaaggccgc gacggtaaaa atgcgcgtaa aggtgcaaaa
     3961 gtaggtgccg ccgttggtgc tgtcactggc gttctgaccg gcaatggcct cgaaggggcg
     4021 attaaaggtg ccgtgattgg cggtacgggt ggtgcaattc tgggtaaaat gaaataagga
     4081 atgatgatga aaaaatttgc tttactggcg ggcctgtttg ttttcgcacc aatgacctgg
     4141 gcgcaggact acaatattaa aaacggttta ccgtcagaaa cctatattac ttgcgcagaa
     4201 gccaacgaaa tggcaaaaac tgacagcgca caggttgcag aaattgttgc ggtaatgggt
     4261 aatgccagcg ttgccagccg tgatttaaaa attgagcaat ctccggaact gagcgccaaa
     4321 gtggtagaaa aactgaatca ggtttgcgct aaagacccgc aaatgctgtt gatcacggca
     4381 attgatgaca ccatgcgtgc tatcggcaaa aaataatatt tcatatgtac cgcgtcgatg
     4441 aatacgacgc ggttttttag ctaacggcgg gatcagaact tatatttcag gcccaccatc
     4501 actgcggtgt cattgtagcc attatcaccc agctgcacgc ccacattccc ccagacgctg
     4561 gccgctggat tcaggttgcc atttacgcca agtttaattt cccccaaatt actcgcccca
     4621 tcttgttcga ctttcacacc gttcattgag acagcaaaat ctttactgtt atggatccag
     4681 ttcatttcaa caaaaggttc aaagtcgtca ccgtgcggac cgctgttttt ctcctgagta
     4741 cgaataaagg tgcggaaacc aagtcgggtc tggatgttgt tatttgcgtc attctcaata
     4801 cgtgagccat tggcttcggt gtgcgcatta tgatcgacgc ccatccagat agcctgtgcc
     4861 tgtggctgga atatccacgt gtatttcgcc gcttccagac caaaggattt attcagggca
     4921 aagccgtaac ccgcttccag cgagacggtt gcgcctttcg cactatagga ttcataggct
     4981 aattcatccc ctttcaccga gtttttaaac cagctatatt gcgcccaggc gtcaatgtat
     5041 gcgccttttt tactgatgtc atcggcaaac caagtggcat acagccctgc gcaatagcct
     5101 ctgacactcc ctttcgaacg ataatccgac acgctggaat gagttgagtt gtagtcgcgg
     5161 gcataaccag ccatcactcc caaacgctaa ctgtcactgt cggtaaaacc accggttaac
     5221 agatcggccc ctaactgcga gacgtagcga tgcgaggtcg ttctcaactg tccgttgctg
     5281 tcacgccagg cattatgccc gccaatttga cgtagccaaa gtcggcttga acgctcctgt
     5341 tcagttacag gatcgatgta gcgcatttca cccgcacggt cgttcagacg cataacaaaa
     5401 agagtgttag cggctgccag gttggcgacg taacttccag cttcggggcg caggacgggg
     5461 gtaggcgttt ctgttggttc tgaatttccc tctgagctgt tatcctccta attcactgac
     5521 tgataacttg tcaaatacca gtttttgcct tgttgtttta gttgatattc gaaagctcca
     5581 gctgcaatcc ttgcatcacc ttgtctgaag gcttctgctg gagattcatc gccattcaca
     5641 gttatgagtt cgatcccgtt tagcgtggcc gcgccgcttc ctccagcatt tttcacatag
     5701 acggtagttg aacccgaagt attaccctca acaataagtc tgtccgtagc cgatttatca
     5761 tcacctaata cggtgcggat attaagctga ccattattac cgacataatt accttttacg
     5821 gttaatgttt ttccttgggt aaatgtttga ccatcatcat acgaaagatt gataatactg
     5881 tctgaattag tcagatgggt aacaacggag tcatctttca tattccagat tgtattttct
     5941 gaaagcttca gcgtggttgt gccgctaacg agtttagtcg ctccatttag aatagagtcg
     6001 gacgaaatta tgtttaagtc acctccagta ttattaacca gaacattatt acc
//
LOCUS       DAJVUN010000210         5981 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.211, whole genome shotgun sequence.
ACCESSION   DAJVUN010000210 DAJVUN010000000
VERSION     DAJVUN010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.211"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            255..617
                     /gene="queD"
                     /locus_tag="OQQ76_003621"
     CDS             255..617
                     /gene="queD"
                     /locus_tag="OQQ76_003621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708563.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HCS1969962.1"
                     /translation="MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV
                     DPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLL
                     SAVMVKETCTAGCIYRGE"
     gene            695..1963
                     /locus_tag="OQQ76_003622"
     CDS             695..1963
                     /locus_tag="OQQ76_003622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCS1969963.1"
                     /translation="MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNL
                     SGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRA
                     RFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
                     AERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGA
                     FLYTNQQTPSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVP
                     EGGLHSMPVQYAGNGWQLVGDALRSCVNTGISVRGMDMALTGAQAAQTLISACQHREP
                     QNLFGLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPV
                     PPLRQLFWRHLRRHGLWHLAGDVIRSLRCL"
     gene            1954..2214
                     /locus_tag="OQQ76_003623"
     CDS             1954..2214
                     /locus_tag="OQQ76_003623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HCS1969964.1"
                     /translation="MSVAHNLWRVADAPHIVPADSVERHMVQWLINACPAGLFSLTPE
                     GDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG"
     gene            2231..2806
                     /locus_tag="OQQ76_003624"
     CDS             2231..2806
                     /locus_tag="OQQ76_003624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HCS1969965.1"
                     /translation="MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTIS
                     NIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGF
                     FCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVC
                     DEEDACNAINAGVVALSTTNTGVWTLAKKLL"
     gene            complement(2954..3814)
                     /locus_tag="OQQ76_003625"
                     /pseudo
     CDS             complement(2954..3814)
                     /locus_tag="OQQ76_003625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417249.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
     gene            complement(3811..4590)
                     /locus_tag="OQQ76_003626"
     CDS             complement(3811..4590)
                     /locus_tag="OQQ76_003626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HCS1969966.1"
                     /translation="MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADE
                     QAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPE
                     FVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWTCFTQVERFTLDALFI
                     TLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIICKTVAAEMPA
                     MQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP"
     gene            complement(4568..5977)
                     /locus_tag="OQQ76_003627"
     CDS             complement(4568..5977)
                     /locus_tag="OQQ76_003627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1969967.1"
                     /translation="MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRI
                     AALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWIS
                     DHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFS
                     PRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWG
                     TPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHLKTLFSSRYWRRTAFN
                     SVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHR
                     KFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIR
                     SLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKA
                     LPLVAAGNVGGANEHSVSV"
BASE COUNT         1460 a         1624 c         1524 g         1373 t
ORIGIN      
        1 gaagataagg ttaacggggt gaacggtgtg gattaaagac gggatagcga taactaataa
       61 ccaaatcgac taacctgttt tagcaatagt ctttaacaac aaaatagatt aaccaaccca
      121 atgaaaaaca aatgaattta gccaatcatt aagataaatc agcgattttg cgcaacaaag
      181 tcgttttaga taatgcgaaa aaacagcctt tccggtactc tacggcggtt ttatcgtcct
      241 gtagagaaat tatgatgtcc accacgttat ttaaagattt caccttcgaa gccgctcacc
      301 gcttaccaca cgtcccggaa gggcataaat gtggtcgcct gcacgggcat tcctttatgg
      361 tgcgactgga aattaccggg gaagtcgatc cgcatacggg ctggattatc gatttcgctg
      421 aactaaaagc ggcgtttaag ccaacttatg agcgcctcga tcaccattat ctcaatgata
      481 ttccaggtct ggaaaaccca actagcgaag ttttagcaaa atggatttgg gatcaggtta
      541 aacccgttgt gccgctgtta agtgcggtga tggtaaaaga aacctgcacc gctggttgta
      601 tctatcgcgg cgaatgataa gagtgtgtcg gcggtcaatt tcccttaagt aacgctatgt
      661 tagggtattg tgttcaggat atctggggca tgacatggaa gacgactgcg acattattat
      721 tattggtgcc ggtattgcag gcaccgcttg cgcgttacgc tgcgcgcgag cgggtttatc
      781 cgttttgtta ctggaacgcg ctgaaatccc cggcagcaaa aatctttccg gcggacggtt
      841 atatacccat gcactcgcgg aactcctccc tcagtttcat ctgaccgcgc ctcttgaacg
      901 acgcatcact cacgaaagcc tttccctgtt aacgcccgat ggcgtaacga cgttttccag
      961 cttacagccc ggcggtgaat cctggagtgt attacgtgca cggttcgatc cgtggctggt
     1021 tgccgaagcc gaaaaagaag gtgtcgaatg tatccccgga gcgacggtgg atgcactgta
     1081 tgaagaaaac ggcagagtct gtggcgttat ttgtggtgac gatattctcc gcgcccgtta
     1141 tgtggtgctg gcagaaggtg ccaacagcgt cctggctgaa cgtcacgggt tagtgactcg
     1201 tcctgctggc gaagcgatgg cgttggggat caaagaagtg ctgtcgctgg aaacatccgc
     1261 tattgaagaa cgttttcatc tggagaataa cgaaggcgca gcgttgctgt tcagcggcgg
     1321 aatctgtgat gacttacccg gcggcgcatt tctttatact aatcaacaaa cgccctcgtt
     1381 agggattgtt tgcccgctct cttcccttac gcaaagtcgt gttccggcaa gcgagctgct
     1441 gactcgcttt aaagcgcatc cggcagtgcg cccgcttatc aaaaacacgg aatcactgga
     1501 gtatggtgcg catctggtgc cagaaggtgg cttgcacagt atgccggtgc aatacgccgg
     1561 taacggctgg cagctggtgg gcgatgcgtt gcgcagttgc gtcaataccg gaatttccgt
     1621 gcgcggcatg gatatggcgc tgactggcgc gcaggcggca caaacgctga taagcgcctg
     1681 ccagcaccgc gagccgcaaa atctgtttgg gctttatcat cacaacgtag agcgcagcct
     1741 gctatgggat gttctacaac gttatcagca tgttccggcg cttttgcaac gccctggctg
     1801 gtatcgggcg tggcctgcgt taatgcagga tatttcccgc gatttatggg atcagggtga
     1861 taaacctgtt ccaccgctgc gccagttatt ctggcgtcat ttacgtcgtc atggcctgtg
     1921 gcatctggcg ggcgatgtta tcaggagtct gcgatgtctg tagcccataa tctctggcgc
     1981 gttgctgatg cgccgcacat tgttccggct gactccgttg agcgtcatat ggtacaatgg
     2041 ttgattaacg cctgtccggc aggtcttttt tcgctcacac cggaaggtga cttacgcgtt
     2101 gattatcacg gctgcctgga gtgtggcacc tgccgtttgc tgtgcgacga atccacacta
     2161 caacagtggc gctatccgcc ttccggattc ggcatcacct accgctttgg ataaataata
     2221 aggataattt atgcccctct tacacctgct ccgccagaat ccggtgattg ctgccgttaa
     2281 agataatgcc agcctgcaac tggcaatcga ctctgaatgc cagtttattt ccgtgttgta
     2341 cggcaatatc tgcaccatca gtaatatcgt taaaaagatt aagaacgccg ggaaatatgc
     2401 ttttattcat gttgatttgc tggaaggcgc gtcaaataaa gaagtcgtga ttcagttttt
     2461 gaaactggtg accgaggcgg acggcattat cagtaccaaa gcctcaatgt tgaaagcggc
     2521 aagagcggaa ggttttttct gtattcatcg cctgtttatt gttgattcaa tttcgtttca
     2581 caacattgat aagcaagttg cgcaatcgaa tccggattgt attgagatcc tgccaggctg
     2641 tatgcccaaa gtgctgggct gggtgacaga gaaaatccgc caaccgctga ttgccggtgg
     2701 gctggtgtgc gatgaagaag atgcgtgtaa tgcgattaac gcgggtgtcg tggcgctttc
     2761 caccacgaat accggggtct ggacgttagc gaaaaaatta ctttgacggg ataatcgtaa
     2821 ccaattgaat ttggtttgat ttgtaggccg cacgccacat ccgacattca gcgcctgatg
     2881 cgacgcttga cgcgtcttat caggcctaca agtcccctgg ccagaaccgt aggcaggatc
     2941 atccggcaac acattattgg caatctgcgt gaatgtttgt caccagtgcc tccagcacca
     3001 ctttccagtc atcaaccacg ccaacatctg cctgtgaaaa taccgcagcg ctggcgtcat
     3061 gattaatcgc caccacaaac ttgctattgc gtacgcccgc cattaacgct gctgcgccgg
     3121 aagcgccaac aacaatacac acctcaggtg ccagcaaatg tccggaaata ccaatcactt
     3181 tttcagcatc aacgccaccg ttcatcactc gcgcccgact gtagcccact tcggctccca
     3241 gcttttctgc cagcatagcg atttcctggt tatctgcctc tccgccctgc cccaccacca
     3301 gcacccgtct ggcctcagct aatgggtcgc gagtaacatt tttcagatcc tctgtgctaa
     3361 ccagccagtc gggaagcgca cccgggacaa tgttcagttg ttgtattcca gagggcaacg
     3421 tggcgttttt cgctgctccc gcctgacgcg ccagggaaag gcatagcggg cgtttttctg
     3481 tttgcagcgt cgccgttagc gcatttcccc agtgggattt gcgcacgctt acggttggaa
     3541 tatctaacga agtcacctgg cagatgcttg caccatgtaa acgccaggcc agccgggtcg
     3601 acagttcatc gccaaacgtt cccggcggaa agagaacaac gtccgcaggc gttcgctgcc
     3661 actattccac caacgcatcc agcacctgtt ccgccactac aggctgaggt tcaatctgcc
     3721 agtgcgccag ggtacaacca ctgaaatcct gcgccgccag ccagcttgct attgcggcat
     3781 tctcctgatt tattgtcaca attgcgatat tcatggctgc atcctttggc gtaaatagtc
     3841 ctgccatagc ttttgagctt tttctgctac cgtttgccca tcaatcagcg tcgctccgcg
     3901 tcgttgctct gctcttgcca gttgcagaca ctgcatcgct ggcatttcgg cagcaacagt
     3961 tttacagata atttctgctt tccccgcagc cattcgctgg cgcattcccg gtactggcaa
     4021 ggccacttca ccgcactgac gcacggcaat caccgcaggc aagcgaaccc ggcaacaacg
     4081 caacccatgt tcagtacgct gttcgagggt gataaacagc gcgtcgagag tgaaacgctc
     4141 cacctgggtg aagcaggtcc agcccagcat ttccgccagc aaaaatggcg tttgcccatt
     4201 ctgcccttcg ctgctttggc agccggtaat tatcagatcc agcggattct gatgctgcca
     4261 ttcggcaata tggcgagcga caaattccgg cgcaaagcgc agatctgccg ccgtctccag
     4321 caatacagct tcctcaaacc caagagccat gagatagcgc agccagtgca atgcccgttc
     4381 atcccccatg ctcaacgcgg ttaaagacat cggcgtaccg ttttttctct gcgccaacag
     4441 cagcgcggca gcggcctgtt catcagcacc gagtaaactt cgcagtagcg aaatatccgg
     4501 tccgctttta ccctgagccg ccgcctgcca ctctttttcc gccagcattc cggcatccgg
     4561 ttcggcttta aacgctaaca gaatgttcat tcgcacctcc tacatttccc gccgccacca
     4621 gcgggagggc tttagtttct ggtgcccata gccaggtcac aacaaaacca accaacaaca
     4681 ctgtcgccag gagcaataag gtgacttgca ttccccactg cgccagcacc cacggcagca
     4741 ggccagtact taccgccgcg ccaagtcgac tcatggcggt ggcaaaaccg acgcccagcg
     4801 agcgaatgtc agtaggaaaa ctttccgcag gcaaaatgcc caccagatta ctgactgccg
     4861 aaatggtggt gctgaagaga acaaaaagca gcagcgttaa tgaactgccg gaaggcaaac
     4921 aggccattac taccagcgtt gccgccagca gcaaaaaact tcccagcaaa aatttgcgat
     4981 gtgccagcag gtgcgtcaga actaatccca gcagcgcgcc cacaattaac aacgcattaa
     5041 gcatcaggct ggcagtcagc gcatcttcca gaccaatagt ctgggcgata gttggcagcc
     5101 aggtataaat cacaaaccat gggattacga ggcagacaaa gaagacgctg ttaaacgccg
     5161 tgcgccgcca gtaacgcgaa gagaacaagg ttttgaggtg tttatgggtc gccgttacca
     5221 cttcatcgcc cagtaaaaca tggggaccaa aatagcgatg cacgatagcg tgagcttctg
     5281 caaaacgccc ctggcgcagt agccagcgtg gtgattctgg cgttccccag cgtaataacg
     5341 taatcaacaa cgcgggcaga gctgccgatg ccagtagcca gcgccaggcc tccgggtttt
     5401 cggaaataaa gtgatgtccg gcaatacttg ccagcacata gcctacggtc cacaccacgc
     5461 tgaatgcgcc cagcaaaata ccgcgatggc ggcgcgggga aaattcagcc agcaaggtgt
     5521 gacctactga ataatcgcct cccagaccaa tgccaatcaa aatgcgcagt ccaataagat
     5581 gctctggcgt ggtggcaaaa aattgtaaaa acgaagcaag cgtaatcagc aaaaagctga
     5641 aggtgaagat tttttgccga ccaatatggt cggagatcca cccaagaacc aggctgccaa
     5701 ggaacaaacc aaggagcgcc gagccgccga tcattcccgc cataaacggc gtcagttgca
     5761 tggcgggcgt aagctgaata atggcgtaac caatgacgcc gagaacataa ccgtcggtca
     5821 ggtgtgcgcc gaaagtgagc gcagcaatgc ggcagtgaaa acggttaagc ggtaaatcat
     5881 ccattcgcac cggtgaagtg ttcatcttta ccccttcatt gtccggtaat aagaacggct
     5941 tctcgcctga gaagccgaaa aggcaacgcc ccgtcatcgc g
//
LOCUS       DAJVUN010000211         5978 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.212, whole genome shotgun sequence.
ACCESSION   DAJVUN010000211 DAJVUN010000000
VERSION     DAJVUN010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5978
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.212"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            135..2195
                     /gene="ptrB"
                     /locus_tag="OQQ76_003628"
     CDS             135..2195
                     /gene="ptrB"
                     /locus_tag="OQQ76_003628"
                     /EC_number="3.4.21.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
                     /protein_id="HCS1969968.1"
                     /translation="MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQEN
                     SYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQS
                     AFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNL
                     ETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYE
                     EKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLD
                     HYQHRFYLRSNRHGKNFGLYRTRLRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQ
                     RGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLRYGYSSMTTPDTLFELD
                     MDTGERRVLKQTEVPGFDAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVY
                     GYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDY
                     LDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTML
                     DESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWE
                     PAKWVAKLRELKTDNHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPA
                     TPAD"
     gene            complement(2192..2854)
                     /gene="exoX"
                     /locus_tag="OQQ76_003629"
     CDS             complement(2192..2854)
                     /gene="exoX"
                     /locus_tag="OQQ76_003629"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HCS1969969.1"
                     /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPIS
                     PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL
                     ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ
                     MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWSFNNLDSMSPELRLTLKHYLE
                     KT"
     gene            complement(2878..3534)
                     /locus_tag="OQQ76_003630"
     CDS             complement(2878..3534)
                     /locus_tag="OQQ76_003630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HCS1969970.1"
                     /translation="MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPS
                     LSLLGCDYSRRALPAPPDLSLLDLLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPW
                     RKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
                     LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
                     "
     gene            complement(3636..3866)
                     /gene="holE"
                     /locus_tag="OQQ76_003631"
     CDS             complement(3636..3866)
                     /gene="holE"
                     /locus_tag="OQQ76_003631"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit theta"
                     /protein_id="HCS1969971.1"
                     /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ
                     PEHLRSWFRERLIAHRLASVKLSRLPYEPKLK"
     gene            4005..4379
                     /gene="yobA"
                     /locus_tag="OQQ76_003632"
     CDS             4005..4379
                     /gene="yobA"
                     /locus_tag="OQQ76_003632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopC domain-containing protein YobA"
                     /protein_id="HCS1969972.1"
                     /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA
                     PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT
                     VDWHVVSVDGHKTKGHYTFSVK"
     gene            4383..5255
                     /gene="copD"
                     /locus_tag="OQQ76_003633"
                     /pseudo
     CDS             4383..5255
                     /gene="copD"
                     /locus_tag="OQQ76_003633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416354.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis membrane protein CopD"
     gene            5268..5609
                     /locus_tag="OQQ76_003634"
     CDS             5268..5609
                     /locus_tag="OQQ76_003634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebY family protein"
                     /protein_id="HCS1969973.1"
                     /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV
                     MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGKKMSL
                     APFIERAEKLC"
BASE COUNT         1497 a         1462 c         1487 g         1532 t
ORIGIN      
        1 tttctctgtc tgcataacat tcgatatccg cgccattacc tgtcatcatc taagcaatga
       61 ctcccctgtt tcgcttgcat ccccggtgag ttttgccacc cttataagat gtttcaacca
      121 gaaagaacaa taacatgcta ccaaaagccg cccgcattcc ccacgccatg acgcttcatg
      181 gcgatacgcg catcgataat tactactggc tgcgggacga tacgcgttct cagccagaag
      241 tcctggacta cctgcaacaa gaaaatagtt acggtcatcg ggtgatggcc tcacaacaag
      301 ccttgcagga tcgcatctta aaggaaatca tcgaccgcat tccgcaacga gaagtttctg
      361 cgccctacat caaaaatggc taccgctatc ggcatattta tgaaccaggc tgtgaatatg
      421 ctatctacca gcgtcaatcg gcattcagtg aagagtggga tgagtgggaa acattgctcg
      481 atgccaataa gcgcgcagct catagtgagt tttattcgat gggcggaatg gcgattacgc
      541 ccgataacac cattatggcg ctggcagaag attttctttc ccgacgccag tacggcattc
      601 gttttcgtaa tctggaaact ggtaactggt acccggaact gctggataac gttgaaccca
      661 gctttgtctg ggcaaatgac tcctggactt tctactatgt tcgcaagcat ccggtgacgc
      721 tgctgcctta tcaggtctgg cgtcacgcca tcggtacgcc agcatcgcaa gataaactga
      781 tctacgaaga aaaagacgat acctattacg tcagcctgca taaaacgacc tcgaagcact
      841 atgtagtcat tcatttggcc agcgccacca ccagtgaagt tcgcctgctg gacgcggaaa
      901 tggccgatgc cgagccgttt gtttttctgc cgcgccgcaa agatcacgaa tacagccttg
      961 atcactacca gcatcggttt tatctgcgtt ccaaccgcca cggcaaaaac tttggcttat
     1021 accgtacccg cctgcgtgat gagcaacagt gggaagagtt aattccgcca cgcgaaaaca
     1081 tcatgctgga agggtttacg ctgtttaccg actggctggt ggttgaagag cgtcagcgcg
     1141 ggttaaccag tttgcgccaa attaaccgca agacccggga agtcattggt attgcctttg
     1201 atgatccagc ctatgtgacc tggattgcct acaatccaga acctgaaacc gcgcgattgc
     1261 gttatggtta ttcttccatg accacaccag acactttgtt tgaactggat atggataccg
     1321 gtgagcgtcg tgtattaaaa caaacggaag ttcctggttt tgatgcggcg aattaccgca
     1381 gtgaacacct gtggatagtc gcccgtgatg gcgtcgaagt tccggtttcg ttggtctacc
     1441 atcgcaaaca ttttcgcaaa ggacacaacc cgttgctggt gtatggctat ggttcttacg
     1501 gcgcaagtat tgatgccgat ttcagtttta gccgcttgag tttgttagat cgtggctttg
     1561 tctacgccat tgtccatgtt cgcggcggtg gtgagctggg gcaacaatgg tacgaagacg
     1621 gaaaatttct gaagaagaaa aatacgttta atgattatct tgatgcctgc gatgcattgt
     1681 taaaactggg ctatggctct ccttcgcttt gttatgcgat gggcgggagt gcggggggca
     1741 tgttgatggg cgttgcaatt aatcaacgcc cggaattatt ccacggcgtt atcgcccagg
     1801 taccgtttgt tgatgttgta acaacgatgc ttgatgaatc aattcctctt accactggtg
     1861 agtttgaaga gtggggtaac ccgcaggatc cgcaatatta cgagtacatg aaaagctaca
     1921 gcccgtatga caacgtcacc gcacaggctt atccgcattt actggtaacg accggtttac
     1981 acgattctca ggtgcaatat tgggaaccgg caaaatgggt cgctaaattg cgcgagctga
     2041 aaaccgataa ccatctttta ttgctctgta ccgacatgga ctcaggccat ggcggtaaat
     2101 ctggccgctt taaatcgtac gaaggcgtag cgatggaata tgcttttctg gtcgcgctgg
     2161 cgcagggaac attacccgct acgcctgcgg attaagtctt ttccagataa tgtttcagtg
     2221 ttaaacgcag ctccgggctc atgctgtcca ggttattaaa tgaccagcgc agatagcccg
     2281 gatcgcgttc ggcaacgtcg gaaaccgctt tgccacggta tttgccaaag gtgaaggtcg
     2341 tcatcaacga cggacgtccg gtgatatcgg ccatctgttc tgccgtccag ccggaggtgt
     2401 tcataatatc gataagcaac gcggcggtga tataacagtc atacaacgcg cggtgatgat
     2461 gcaggcccgg cggcgtctgt acattgagct tccgtgtttt atataacgcc atattgctgt
     2521 acttgatccc tggccacaaa cgacgggcca gtttcatagt gcaaatccac tcaccgggca
     2581 tctcaggcag tacgcggcgg tcaaagctgg cgttgtgcgc gacataccat tcactaccgt
     2641 aatagtgtgg gatcacatct tcaatccacg gtttatcggc gaccatggct tcggtgatgc
     2701 gatgaatcgc catcgcttgt ggactaatag gacgatcggg gcgcaccagg tggctcatgg
     2761 ggttgacgat ttttccgtca atgacatcaa cagaggcaat ctcaacgatc cctccctgca
     2821 aaccgcaggt ttctgtatcg ataatgcgca acatggcatg ctccaggccg aaaaagccta
     2881 gcgtaatgga atgatatcgc cttgccaacc ctgtgatgaa cgctgaccga ctaacaataa
     2941 tgaaccacga tcggcgcgaa cgatgagacg accatattca tcccatagtg cactgttacc
     3001 acgggcattt gccatcagca cggcaatcga gtactgatgt gaaaaaaatt gtaagcgacg
     3061 ggccgacgcc agcaggtcgg gttctcccag acattgccct gtagtaaaca gtgaacaggt
     3121 cgggtccata tccatacctt gcggttgttc atcgaccacc gtgatggttc tggaacgacg
     3181 gcccagacat gcaccatgac tctgatggta gatcccaggc gtttttcgcc acggtgcgaa
     3241 caccgcaatt ccacgaataa agcgatcgtt atattcaacg ggaaggccgg caatgatggt
     3301 cattcgccag gtcgttgcgg cataacaaag caggtctaac agtgagagat cgggtggggc
     3361 aggaagggca cgtcgcgaat aatcacaccc cagtaaagaa agcgatggaa aaactaacag
     3421 ctgacattgt tgcctggcgg cggccctcac aaactccaga tgatgagcta cctgttcggt
     3481 gagtgaggtt ttacgaggct catattgcgc tgctgcaact ttccagaacg acataatgac
     3541 ttccttttca aaatgactgc aaattatggg tgcggtttag aaaatactca taatttagca
     3601 ggcgttatgt aagaaagtgt aactctgtat aagttttatt taagtttggg ctcgtaaggt
     3661 aaacgtgaca gtttgaccga agccaaacgg tgggcaataa gcctctcgcg aaaccagctg
     3721 cgcaaatgtt caggctgttc acgttcaacc gcttcagcga tcaccggcat attgtagcgt
     3781 tctttaaatg ccaccccggc cgccgccaaa tcgacattca ctttatccat ttctgtttga
     3841 tccagtttag ccagattctt cagcattctt aatctcctca tcattcgcgg gcaaaagtta
     3901 ctaagagtga gccaggatgg caagccggaa ttgatgatcc tcgactcaga cattagacaa
     3961 ggttatgctc tgtaaaaaag ttattacaaa aaggaataga taatatggct tcaactgcac
     4021 gctcccttcg ctacgcgctg gcaatcctga ccacttcgtt ggtgacacct tccgtctggg
     4081 cacatgcgca tttaacgcat cagtatcctg cggcaaacgc gcaagtgaca gctgcaccgc
     4141 aggcaatcac tttaaacttc tcggaaggtg ttgaaacagg attcagtggt gcaaaaatca
     4201 cggggccaaa aaacgaaaat attaaaacat taccggcgaa gcgaaatgag caggaccaaa
     4261 agcaactgat tgttccactg gccgattcgc tgaaacccgg aacctacacc gttgactggc
     4321 atgttgtttc ggtggacggg cataaaacga aaggacacta cacctttagc gtgaaataaa
     4381 tcatgctggc gtttacctgg atcgcgctgc gatttatcca tttcacctcg ctgatgctgg
     4441 tttttggctt cgcaatgtac ggtgcctggc tggccccctt gacgattcgt cgcttgctgg
     4501 cgaagcgttt tctgcgttta caacagcacg ctgccgtctg gagtttgatc agtgccactg
     4561 caatgctcgc cgttcagggc gggttgatgg gaacgggatg gacagatgta ttttcgccaa
     4621 acatttggca ggctgttttg caaacgcagt ttggtggcgt ctggttatgg caaattgttc
     4681 tcgccctcgt aacgttgatc gtcgccctta tgcaaccgcg gaatatgcca cgtttgctgt
     4741 ttatgctcac taccgcgcaa tttattctgc tggcgggagt ggggcatgcg acgctgaatg
     4801 aaggggtaac ggcgaaaatc catcagacta atcacgcgat tcacctgatt tgtgcggcgg
     4861 cgtggtttgg gggattactg ccggtgctct ggtgtatgca actcatcaaa ggccgttggc
     4921 gacaccaggc tattcaggcg ctgatgcgtt tttcatggtg cgggcatttt gcggtgatcg
     4981 gcgtactggc aagcggcgtg cttagtgcat tgttgattac cggatttccc cccacgctta
     5041 cgacttactg gggccaactc ttattgctca aagccatcct ggtgatgatt atggtggtca
     5101 ttgcgctggc taatcgttat gttcttgtac cgcgcatgag gcaggatgaa gatcgtgcgg
     5161 caccctagtt tgtgtggatg actaaactcg aatgggcgat aggtgcggta gtgctggtga
     5221 tcatcagcct gcttgcgact ctcgaacctt tttgatggat tacgaaaatg atgaaaaaaa
     5281 gtattctggc gtttctgtta ctcaccagtt ctgcagcggc gctggctgca ccgcaggtga
     5341 ttaccgtcag tcgttttgaa gtgggtaaag acaaatgggc gtttaatcgc gaagaggtga
     5401 tgctgacttg ccgaccgggt aatgctttgt atgttattaa tccgagtacc ctcgtgcagt
     5461 atcctttaaa cgatatcgca caaaaggaag ttgccagtgg gaagaccaat gcccaaccca
     5521 tttcggtgat tcagattgat gatcctaaca atcccggcaa aaaaatgagt ctggcaccgt
     5581 ttatagaacg agctgaaaaa ctctgttaat tacctaaaat agccttttga tttccaataa
     5641 aaaaaccgcc tcagttcttt caccagaacg ggcggttttt aacatttcag ctgatgacca
     5701 ccacgctttt tattgaccat tttgcacgca aactggaaaa cctggcgtcg tcatctattc
     5761 ttaaagggca aggcaactaa gcctgcatta atgccaactt ttagcgcacg gctctctccc
     5821 aagagccatt tccctggacc gaatacagga atcgtattcg gtcttttttt aattgcattt
     5881 gaaatcaatt agttgcaaat atctccccga aattccccga aatttactcg aatttctgta
     5941 ttccggtctt ttttggttat atcacaacca aaatacat
//
LOCUS       DAJVUN010000212         5950 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.213, whole genome shotgun sequence.
ACCESSION   DAJVUN010000212 DAJVUN010000000
VERSION     DAJVUN010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5950
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.213"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(561..866)
                     /locus_tag="OQQ76_003635"
     CDS             complement(561..866)
                     /locus_tag="OQQ76_003635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008325193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1969974.1"
                     /translation="MGSKIAGVVFLYFAVWGMASVIELQYWRNADTYPVWLTKHLRIS
                     PENNDKSLIRIEMETFDKVCGDKRGLLAVTQKQNGMFMRCDDSPGFFSWFSGVYKVN"
     gene            complement(920..1171)
                     /locus_tag="OQQ76_003636"
     CDS             complement(920..1171)
                     /locus_tag="OQQ76_003636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004182043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HCS1969975.1"
                     /translation="MTNIILCDVTASVSELKNDPVATASARGGYPVEIIDRNRPVFYC
                     VPAALYEQMLDELDEKDLVQTITERQNQPLREVDLNQYL"
     gene            complement(1250..2521)
                     /locus_tag="OQQ76_003637"
     CDS             complement(1250..2521)
                     /locus_tag="OQQ76_003637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HCS1969976.1"
                     /translation="MFALADVNSFYASCEKVFRPDLRGKPVVVLSNNDGCVIARSAEA
                     KRLGIKMGTPWFQLKEAQFPEKLYVFSSNYELYASLSNRVVALLEELSPRVEQYSIDE
                     CFLDARGISHCMDLEDFGRQLRGHVLSGTGLTIGVGFGATKTLAKSAQWASKEWPQFS
                     GVLALSPENPRRTAKLLSLQPVEEIWGVGNRIAKKLHVMGITTALQLSLTNPTFIRKN
                     FNVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGQRITTYGEMRQAVCQYAERAA
                     EKLRGERQYCRHISTFIKTSPFAVNEPYYGNVATEKLNTPTRDTRDIIAAAVRSLDRI
                     WLDGHRYAKAGIMLNDFSPNGVAQLNLFDDVQPRPHSDALMKVLDGINHSGLGKVWFA
                     GRGIAPDWQMKREMLSPAYTTRWKELPVARF"
     gene            complement(2521..2946)
                     /gene="umuD"
                     /locus_tag="OQQ76_003638"
     CDS             complement(2521..2946)
                     /gene="umuD"
                     /locus_tag="OQQ76_003638"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HCS1969977.1"
                     /translation="MKFIPAVSEASIVKIPLFTERCPAGFPSPAANYTESELDLNEYC
                     IHRRHSTYFVRAIGNSMTDIGLYSGDLMVVDKAEQPRHGDIVIAEIEGEFTVKRLLLT
                     PRPALQAMNPDFPSLYPDPETLQIFGVVTAFIHKTRRAD"
     gene            3047..4267
                     /locus_tag="OQQ76_003639"
                     /pseudo
     CDS             3047..4267
                     /locus_tag="OQQ76_003639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3-like element ISKox3 family transposase"
     gene            4722..5687
                     /locus_tag="OQQ76_003640"
     CDS             4722..5687
                     /locus_tag="OQQ76_003640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HCS1969978.1"
                     /translation="MTMNLHTQTTAPKASQATSVSPLEQSGSSKTKFSRGKSKARAGA
                     VKTDLYQTVTDSIIAALESGVKPWVCPWVRNGAAVGLPANFSTGTAYSGINIMLLWCS
                     AAKQGFQDERWLTYKQAQELGGQVRKGEHGTTAIFYKTLEKEDEDGEIEKIPMLKAFT
                     VFNVEQIDGLSIESVPQPVAGFDPLPQAEALMIRSGAKITEQGVKAFYRPATDEIVLP
                     ERFRFADAANFYATGLHELVHWTGAASRLNREKGNKFGSEAYAFEELIAELGSAFLLA
                     DLGITGEVQHESYIASWLKALKGDKRYIFKAAAAASKAHRWLMDC"
BASE COUNT         1420 a         1576 c         1624 g         1330 t
ORIGIN      
        1 gtctgggacc acggtgccac ctgtatcgcc ggtcaggtta tctgcctggg accacggtcc
       61 cacctgcatc gtcggcacat tattagttag ggacaacggt tcaatcaatg cctgtcacga
      121 acaggtattg gcttgtcgcc agcaacccgt tgagcggagt aatcacgcag caggacggct
      181 gttacaggcg atggtgaaag ctctgttggg atctgaacga agcatgttga gtgaaatttg
      241 caaaatttcg cagagtatgc ggcttcatct ttaaatttcc gccagcattt ttaaagccag
      301 ctaccgacgc tgcgcgttgg ccggcccttc gtccggcggg taaccagtac cggccgatct
      361 tacgaccctg gatgaacatc atcccgtcag cagcgtctcc actgtgatgt cgtttttcac
      421 actgtccgat cacaaaatag aacgggcagg gacaacatat ggtaggaaaa gcagctgcca
      481 gagacacaat atattgatta cccacagtaa cgggggataa ccatgtgggt aacatattga
      541 aagtgcaaca cgttatctga ttaattgact ttgtaaacgc cgctgaacca tgaaaaaaaa
      601 ccgggggaat catcacagcg cataaacata ccgttttgtt tttgggtgac ggcaaggagg
      661 ccccttttat caccacatac cttgtcaaag gtttccattt ctatccttat caggctcttg
      721 tcgttatttt caggagagat ccggagatgt tttgtcagcc agacaggata ggtatcagcg
      781 ttacgccagt actgcaattc aatcactgaa gccattcccc agacagcgaa gtataagaaa
      841 accacacctg cgattttgct acccatattg ttccttaaca ttggcttaat acattccttg
      901 ctcctcgcac cggagcacat cacagatact gattgagatc cacttcacgc agcggctggt
      961 tttgacgttc tgttatcgtt tgcaccaggt ctttttcgtc cagctcatcg agcatttgtt
     1021 catacaaagc cgcgggcaca caataaaaaa cagggcggtt acggtcaatt atctcgaccg
     1081 ggtagccgcc gcgggcactg gcggtggcca ccggatcgtt tttaagttcg ctgacgctgg
     1141 cagtcacatc acacagaatg atatttgtca tggttccccc ctgagacaag tcacctgtat
     1201 gatcggtaaa gtaagctctg gcggcaagtc ccttctgtca tttcaacggt cagaaacggg
     1261 caaccggcag ctccttccag cgtgtggtat atgccggtga cagcatctcc cgtttcatct
     1321 gccagtccgg cgcaataccc cgtccggcaa accagacttt cccgagtccg gaatgattaa
     1381 tgccgtcgag taccttcatc agcgcatcgc tgtgcggccg tggctgcacg tcatcgaaca
     1441 gattcagctg cgcgacgccg ttcggactga aatcattgag cattatcccc gcttttgcgt
     1501 agcggtggcc atcgagccat atcctgtcca gagacctgac cgctgccgcg ataatgtccc
     1561 gggtgtcacg ggtaggggtg ttcagttttt ccgtggccac gttaccgtaa tacggctcat
     1621 taaccgcaaa aggggatgtc ttgatgaagg tgctgatatg ccggcagtac tgtcgctcac
     1681 cgcgcaactt ttccgccgcg cgctcggcat actggcagac ggcctggcgc atttctccgt
     1741 aggtggtgat ccgctgcccg aagctgcgac tgcagacaat ctgctgtttc ggcggcggcg
     1801 cttcctccag cgaaatgcaa ctctcgccgt tcagctcacg taccgtgcgc tccagcacta
     1861 cgttgaagtt tttccggata aatgtagggt tcgtcagcga cagctgcagg gcggtggtga
     1921 tccccataac gtgcagcttt ttcgctatcc ggttccccac gccccagatt tcttccaccg
     1981 gctgcaggct gagtaatttt gccgttctgc gtggattttc gggcgacagc gccagcaccc
     2041 cactgaattg tggccattcc tttgacgccc actgcgccga tttggccagt gtttttgtgg
     2101 cgccgaagcc gacaccgatc gtcagtccgg ttccactgag aacatgccca cgcagctgcc
     2161 tgccaaaatc ctccagatcc atacagtggc taattccccg ggcatccagg aaacattcgt
     2221 caattgagta ttgttcgacg cggggcgaca gctcttccag cagggcgacc acacggttac
     2281 tcaggctcgc gtagagctcg tagttgctgg aaaaaacgta cagtttttca ggaaactgcg
     2341 cctctttgag ctggaaccag ggggttccca tctttatacc cagccgtttg gcttcagcac
     2401 tccgggcaat aacgcagcca tcgttgttac tgagaacgac gacaggtttg ccgcgcaaat
     2461 ccggcctgaa aaccttctcg caactggcgt agaaggagtt gacgtctgcc agggcgaaca
     2521 tcagtctgcc ctccgggttt tatgaatgaa ggccgtcacc acgccgaaaa tttgcagagt
     2581 ttccggatcc gggtacaggg aagggaagtc cgggttcatc gcctgcaggg ctggccgcgg
     2641 cgtcagaagc aggcgtttta ccgtaaattc accctcaatt tccgcgataa caatatcccc
     2701 gtgccgcggc tgttctgctt tatccacgac catcagatcg ccggaataga ggccaatatc
     2761 agtcattgag ttgccaatcg ctctgacaaa ataggtggag tggcgccggt gaatgcagta
     2821 ctcattcaga tccagttcag actcagtata gtttgctgcc ggtgacggaa aacccgcagg
     2881 gcatcgctct gtgaacaaag gaatttttac tatgctggct tctgatactg caggaatgaa
     2941 cttcatcgtt ttttccctcg cttaaaactg tatatgcatg ggtcttccct tgttgtggtg
     3001 gctgaaggca tgataatggt gtatttaatc gccagaggtc accgccatgg acgaaaagtc
     3061 cctctacgct catattctca acctgtccga tccgtggcag gtaaagtccc tttctctcga
     3121 tgaaaatgcc ggttctgtta ctgtcactat tgagatcgct gaaaacaccc ggctagcctg
     3181 tccgacctgc ggtaaatcct gttctgttca cgatcaccgt catcgtaaat ggcgccatct
     3241 tgatacctgc cagttcacca ctattgttga agccgatgtt ccacgaatta tgtgtccgga
     3301 gcatggctgc ctgacgttgc ctgttccgtg ggctggcccc ggaagccggt atacgttgct
     3361 attcgaatcg ttcgttctct catggctgaa aatcagcacc gttgatgctg tcaggaagca
     3421 acttaagctc agttggaatg cggttgacgg cattatgacc cgggcagtta agcgaggtct
     3481 tgcccggata aaaaagccat tatccgcccg tcatatgaat gtggatgagg tcgcctttaa
     3541 aaaaggacat cgttacataa cggtgatctc cgatcgcgat ggtcgggcgc tggccttaac
     3601 ggatgatcgc ggcacagaga gtcttgccgg ctatcttcgc acgctcactg atgggcagtt
     3661 gctggctatc aaaacgctct caatggacat gaacgcgggc tatataagag cagcgcgtat
     3721 ccacttaccc agtgcggttg agaaaatcgc ctttgaccgc ttccatgtgg cgaagcaact
     3781 gggcgaggta gttgataaaa cccgtcagaa tgaacatccg cacctccctg ttgaaagccg
     3841 acaccaggca aaaggaaccc gcttcctgtg gcagtacagc gataagtgga tgaccgaatc
     3901 ccggcaggaa aagctgatgt ggctgcgtgc acagatgaag ctgacgagcc agtgctgggc
     3961 gctgaaagag ctggcaaagg atatctggaa caggccatgg agcgaggaaa gacggagtga
     4021 ctggcagaga tggttggcgc tggcggctaa cagtgacgtt cccatgatga aaaatgccgc
     4081 gaaaacgata ggaaaaaggc tgtaggggat cctgaatgcg atgcgacaca gtgtctcaaa
     4141 cggaaatgcg gaggcactta acagcaagat caggctgctg aggataaaag ccaggggata
     4201 ccgaaaccgg gagcgcttta aactgggggt gatgttccac tacgaaaagc tgaatatggc
     4261 gttctgagcc ttcccaccat gatcggggaa gacccatatg catacagtat aaggggcggt
     4321 gaaatttctg caagtgatgg ggggatagcc ggtcagaacg tccccgaaaa caaaccgccc
     4381 ccggtttcag gaagggcgaa ctgaccggca gaggcagtgt aacaccgcat gtcacaaagg
     4441 cagcactgac gtcgtcagtg ctttttttac ccgtcctccc ggacgctgaa gggcagtttc
     4501 acccgtgcag ctaaaggggc ggtaagtccg ggtgtgcaca tcgtcatttt ctcctgtgat
     4561 gcctttctcc tgcgtatcag cttccggtaa tcgtcccccg tcacaacctg gacagcaagg
     4621 gtaaatggca cgctgcgcgc ccttgctgac cagaacgact ccgggcaggc cgaaccgtca
     4681 ggcgatacga agacgaaatt cacactgacg gagaaacagc catgacgatg aacctgcaca
     4741 ctcagacaac cgcccctaaa gcttcacagg cgaccagcgt atccccgctg gagcagtcag
     4801 gctcctcaaa aacgaaattt tccaggggca aaagcaaagc ccgtgctggc gcagtcaaaa
     4861 cagaccttta ccagacagta acggacagca tcattgcagc cctggaaagc ggcgttaagc
     4921 cgtgggtgtg tccgtgggtt cgcaacggcg cagcggtggg attaccggcc aacttcagca
     4981 ccggcacggc atacagcgga attaatatca tgctgctgtg gtgtagtgcg gcaaaacagg
     5041 gttttcagga cgagcgctgg ctgacctaca aacaggcgca ggagctgggc ggccaggttc
     5101 gtaaaggtga acacggcacg acggccatct tttacaagac gctggagaaa gaggacgagg
     5161 acggggaaat cgaaaaaatc ccgatgctga aagcctttac cgtgtttaac gtggagcaaa
     5221 tcgacggcct gagcatcgag agcgtgccgc agccggttgc cggtttcgat ccgctgccgc
     5281 aggcggaagc actcatgatc cggagcgggg caaaaatcac cgagcagggc gtaaaggcgt
     5341 tctatcgtcc ggccaccgat gaaatcgtcc tgccggagcg gttccgcttc gcggacgcgg
     5401 cgaacttcta cgccaccggc ctgcatgagc tggttcactg gacgggtgca gcgtcccgcc
     5461 tcaatcgtga aaaaggcaat aagtttggct ctgaggcgta tgcgtttgag gaactgatcg
     5521 ccgagctggg cagcgcgttt ctgttggcgg atttggggat tacgggagag gtgcagcatg
     5581 aaagctatat cgcgtcctgg ctgaaagcgc tgaagggaga caagcgctac atctttaaag
     5641 cggcggcagc ggcctcaaaa gcgcaccgct ggctgatgga ctgctgacag ctggagccct
     5701 gcggtgcagg gcttcagaat ttttgaaaga gagagaatca gggagggaat tatataagtc
     5761 actgtttttt agaattctgt aacgcggccg gcctcagctg caggacgtcc tgcagctgag
     5821 gccggcacgg aaaaataaac cggacagatt caaaaaaaat gaaccctttt tcaggcggta
     5881 gccgttacgt atccgggata cgtaacggcg cgatgtctta cgtaaaaaat gacgtaacgg
     5941 ctttcgccgc
//
LOCUS       DAJVUN010000213         5948 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.214, whole genome shotgun sequence.
ACCESSION   DAJVUN010000213 DAJVUN010000000
VERSION     DAJVUN010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5948
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.214"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(16..522)
                     /gene="mug"
                     /locus_tag="OQQ76_003641"
     CDS             complement(16..522)
                     /gene="mug"
                     /locus_tag="OQQ76_003641"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HCS1969979.1"
                     /translation="MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQA
                     GFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQ
                     ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
                     QALVVRGR"
     gene            647..722
                     /locus_tag="OQQ76_003642"
     tRNA            647..722
                     /locus_tag="OQQ76_003642"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:680..682,aa:Ile,seq:cat)
     gene            complement(776..1540)
                     /gene="nfeF"
                     /locus_tag="OQQ76_003643"
     CDS             complement(776..1540)
                     /gene="nfeF"
                     /locus_tag="OQQ76_003643"
                     /EC_number="1.16.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent ferric chelate reductase"
                     /protein_id="HCS1969980.1"
                     /translation="MNNSPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDG
                     FTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAID
                     FFIHDGGVASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLET
                     LSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYF
                     IWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK"
     gene            1828..2451
                     /gene="nfeR"
                     /locus_tag="OQQ76_003644"
                     /gene_synonym="yqjI"
     CDS             1828..2451
                     /gene="nfeR"
                     /locus_tag="OQQ76_003644"
                     /gene_synonym="yqjI"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NfeR"
                     /protein_id="HCS1969981.1"
                     /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG
                     DRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP
                     TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ
                     NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD"
     gene            complement(2605..4125)
                     /gene="aer"
                     /locus_tag="OQQ76_003645"
     CDS             complement(2605..4125)
                     /gene="aer"
                     /locus_tag="OQQ76_003645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerotaxis sensor receptor Aer"
                     /protein_id="HCS1969982.1"
                     /translation="MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFT
                     LQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPM
                     VREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLP
                     LRWRARGVMTLMFILLAAMLWFVAAPVVTYFLCVLVVLLASACFEWQIVRPIENVARQ
                     ALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAK
                     GTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAM
                     TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
                     VRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS
                     HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH"
     gene            4542..5921
                     /gene="ygjG"
                     /locus_tag="OQQ76_003646"
                     /pseudo
     CDS             4542..5921
                     /gene="ygjG"
                     /locus_tag="OQQ76_003646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417544.5"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine aminotransferase"
BASE COUNT         1429 a         1620 c         1515 g         1384 t
ORIGIN      
        1 tttcggtggc gttttttatc gcccacgcac taccagcgcc tggtccagct cgcgatacgc
       61 ttcaaccagt ttctctagtg aaacgcgact taaaccgctg ggatttggca gcacccaaat
      121 ctgcgtcgaa ccaatggtga gcgtttgttt cccccactgt gcaccgcgct ggctgaatcc
      181 ctgttcatat gcttgtttgc ccagaatcgc caacgcctgc ggctgataat cttcaatttt
      241 ttcaatcagc ttacgcccac ctgcgtgcag ctcctgcttt gaaacttcat tggcttgcac
      301 cgttggacgg tctaccagtt tggtgacgcc acaacgataa tccagcagat gctgtgcctc
      361 ctgcggcttc aactgacggt cggtaaaccc ggcctgatat atcaccttcc agaagcgatt
      421 tgctggatga gcaaagggaa aaccagtccc ggcggatgaa agcccagggt tgataccgca
      481 aaacacgacc cgtaaccctg gagccaaaat atcctcaacc atatttactc ctttctaaca
      541 tcaccaggaa aagtataacg gattgaaaat acattgttta taaaaacagc aggcgcacgg
      601 taatggctgg attgcgacac ggagttactt tataatccgc taccatggcc ccttagctca
      661 gtggttagag caggcgactc ataatcgctt ggtcgctggt tcaagtccag caggggccac
      721 cagatatagc aaaggctgac gagaaatcgt cagccttttt ctttttatat atcagttact
      781 ttgcgtgcca gtaagccgct gcacgtaccc gctgtgggtc atactgttcc gcttcaaagc
      841 ggcggcttaa attcttaacg actttacctt cgccggttat ccagatgaag taatcatcgg
      901 cagggatttg catctgcgcc agacgcgcat ctaccgcctg ctcatcatgt gccagccatt
      961 cgatattaaa accatcaagg tgcgcgagat aatcctgaca ggcgttatcc cgcacgctaa
     1021 ccagcgcact aacttgcggt ttaacggcaa gtttgctcaa cgtttccagg cggcggcgca
     1081 gtgcgggcat tccggattca tcgcagacat acagctgata cgcgtaatct tccggcacca
     1141 ccagcgaacc gcgcggacca gccaccgtaa gtttatcgcc cggttgcgcc tgcatcgccc
     1201 agccgctggc gaccccaccg tcgtgaataa agaaatcgat cgccagttca tggcgtagtt
     1261 cgtcatacag cggcgtatag tcacgcgacg gtgggcgtgg tccttccggc cagacgatgc
     1321 cctcttccgt taccgttggc ggcacaaagt gagcgtcagg ttgaggaaag aagagtttgc
     1381 tgtgatcgtc aaagccgcgc gatgtaaaac cgtccagcgc ctcgccgccg aggacaatgc
     1441 gctgaaaacc ggcgctgatg cgctcaacgc gtaacacagt cagttcacgg aagcgcagat
     1501 cattgcgaac gcgctgcggg tagcgggggg agttattcat tgttatcgcc ttcgtgatgg
     1561 taatcagata tatctaaata attttcgtaa atgataatga ttgttaatca tgataaatgc
     1621 aagcgattag tagaactgat atgtctatag tctgataaga cgaaccgcct cttctcaggc
     1681 atcattactc aacgccggat gcggcgtgaa cgccttatcc ggcctacgtg tgagatgagt
     1741 ccacatttaa aaatcatttt tattcttgca agagtgctca tatcagatat aaattagata
     1801 tatctaatta agcaaaagga ggctgatatg agccatcatc acgaagggtg ttgtaaacat
     1861 gaaggccagc cacgccatga gggctgctgc aaaggtgaga agtcagaaca cgagcactgc
     1921 ggacacggtc accagcatga acacggtcaa tgctgcggtg atcgccacgg tcgcggcggc
     1981 ggtcgtcggc aacgtttctt tggtcacggt gaattgcgtc tggtgattct ggatattctc
     2041 tcgcgcgatg acagccacgg ttacgaattg attaaagcga ttgagaatct aacccaaggg
     2101 aattacaccc caagcccggg cgtcatctac ccaacgctgg attttctgca ggagcagtcg
     2161 ctgattacca tccgcgaaga ggaaggtggt aagaagcaga ttgcgctgac cgaacaaggc
     2221 gcgcagtggc tggaagaaaa ccgcgaacag gtggagatga ttgaagaacg catcaaagcg
     2281 cgttgcgttg gcgcggcact gcgccagaac ccgcaaatga agcgggcgct ggataatttt
     2341 aaagcggtgc tggatttacg cgtcaaccag agcgatatca gtgatgcaca aataaaaaag
     2401 atcattgcgg tgatcgaccg cgccgctttt gatattacgc aactggatta atcgccgcat
     2461 ccgccagtgg cgcggtgcaa ttgccggatg cgacgcttga cgcgccttat ccggcctaca
     2521 cccgctacac accccgcagg cctgataaga tgcgccagca tcgcatcagg cattgtgctc
     2581 caaccgccgg atccggcata ccgattaatg cagcaccgtc accgcgtctt ccagtcggct
     2641 ggcgcggtgt ttcaccatcg ccgacacctg cgcactctct tccaccagct cagcattttt
     2701 ctgggtgatc aggttaagct catccactgc acgggtcagg ctggaaagcc catcggcctg
     2761 ttccagcgtt gaatggctaa tctgggcgat caactgggtg acgtttttca cctgtgccac
     2821 aatatcttcc atcgtccgtc cggcggcgtg tacctgctgc gaaccggatt gcaccttatc
     2881 agcactggca tcaatcagct tgcgaatatc gttggcagca ttagcgctgc ggctggctaa
     2941 atgacgcact tcccctgcca ccactgcaaa acctttgccc tgttcgccgg cacgcgccgc
     3001 ttccaccgcc gcattcaggg ccagaatatt ggtctgaaac gcaatatcgt taatcagcga
     3061 agtaatggtg ccaatgcgct gggtactgtc ggcgatatcg tccattgtct tgatcaccgt
     3121 ggtcatcgcc tccccaccct gcactgccgc attactggcg gtgatagaaa gtttatcggc
     3181 agccgacgcc gtggcagagt tctgtttcac cgacgccgcc atttggttca tggtcgccac
     3241 cgtttgctga acgttatcaa ctgtctgctg ggtatgttcg ttcagttcat cggtgccttt
     3301 cgccagcgtc tcactgccat ttctgacact ggacacctgg cttgagacat cgttaattag
     3361 ccaacggcac atcaggccaa gctgccctac cgcgcgtaat gtcagcccca gctcatcgct
     3421 gcgattcagg tgctcaacac tattacgctc tccggtcgcc accttcagtg cctgacgggc
     3481 aacattttct atcgggcgca caatctgcca ttcaaaacaa gcgcttgcca acaataccac
     3541 taacacacag aggaaatacg tcaccaccgg ggcagcaaca aaccaaagca tggccgccag
     3601 caagataaac atcagggtca taactccacg cgcccgccag cgaagcggta atgaaggcag
     3661 tttacccagc cagcctttac gcaccaccag gcctttatga atacgcttac tggtacgtcc
     3721 ggcgttcagc gctttgtaca gcggctccac cgccgcaatc tcttcatccg tcgcccgggt
     3781 acgaatcgac atatagccac tgatttttcc ctcgcgcacc atcggtaccg cattggcccg
     3841 cacccaataa tggtcgccat ttttgcggcg atttttcacg atgccgctcc agggctcccc
     3901 ttttttcagg gtgaaccaca tatccgcaaa cgccgctttt ggcatatccg ggtgacgcac
     3961 catgttgtgc ggctgccctt gtaactcttg caaggtaaag ccgctcacct gcacaaaagt
     4021 gtcattagca tgagtgatat agctttgcag atcggtagtg gacatcagag tggtatcgtc
     4081 cgccagcggg gtattttgct gggtgacata cggatgagaa gacatgttcg cgtcctatgc
     4141 aggttatatg gttgttaact tcttgtcaga gtttatgtcg gccccgctgc ggttatcttt
     4201 aaccgattaa tttgatttag atcgcaattt gcgattaaag cacaaatcta attccttgat
     4261 ttaaaatact ttcactctgt tactatacga aaacgttaat tatcttgccc aaaatcaagc
     4321 aattatcgcc ctgaaaacgt gcatttgcac agcaatcatc aaatccatac ccgacaaaaa
     4381 ccgtgcaaaa taacaacgaa tgttaacaaa tagcattaaa tactgcgcaa atgataacca
     4441 catttgtgtt tatcccgatt ttcgcgatcg cagccggagt ggcgcaatcc ctgcaatact
     4501 taaatcgata tcatgtgata cgcgagcctc cggagcatat tttgaacagg ttaccttcga
     4561 gcgcatcggc tttagcgtgc agcgcccacg ccctgaatct cattgagaag cgaacgctgg
     4621 atcatgagga gatgaaagca cttaaccgag aggtgattga atacttcaaa gagcatgtca
     4681 atccggggtt tttagagtat cgcaaatctg ttaccgccgg cggggattac ggagccgtag
     4741 agtggcaagc gggaagttta aatacgcttg tcgacaccca gggacaggag tttatcgact
     4801 gcctgggagg ttttggaatt ttcaacgtgg ggcaccgtaa tccagttgtg gtttccgccg
     4861 tacagaatca acttgcgaaa caaccgctgc acagccagga gctgctcgat ccgttacggg
     4921 cgatgttggc gaaaaccctt gctgcgctaa cgcccggtaa actgaaatac agcttcttct
     4981 gtaatagcgg caccgagtcc gttgaagcag cgctgaagct ggcgaaagct taccagtcac
     5041 cgcgcggcaa gtttactttt attgccacca gcggcgcgtt ccacggtaaa tcacttggcg
     5101 cgctgtcggc cacggcgaaa tcgaccttcc gcaaaccgtt tatgccgtta ctgccgggct
     5161 tccgtcatgt gccgtttggc aatatcgaag ccatgcgcac ggctcttaac gagtgcaaaa
     5221 aaaccggtga tgatgtggct gcggtgatcc tcgaaccgat tcagggtgaa ggtggcgtaa
     5281 ttctgccgcc gccgggctat ctcaccgccg tacgtaagct atgcgatgag ttcggcgcac
     5341 tgatgatcct cgatgaagta caaacgggca tggggcgcac gggcaagatg ttcgcctgcg
     5401 ggcatgagaa cgtacagccg gatatcctct gccttgccaa agcgctcggc ggcggcgtga
     5461 tgccgattgg cgcgaccatc gccactgaag aggtgttttc agttctgttc gacaacccat
     5521 tcctgcatac caccaccttt ggcggcaacc cgctggcctg tgcggcggcg ctggcgacca
     5581 tcaatgtgtt gctggagcag aacttaccgg ctcaggctga gcaaaaaggc gatatgttgc
     5641 tggacggttt ccgtcaactg gcgcgggaat atcccgatct ggtacaggaa gcgcgtggta
     5701 aagggatgtt gatggcaatt gagtttgttg ataacgaaat cggctataac tttgccagcg
     5761 agatgttccg ctagcgcgta ctggtggccg gaacgctcaa taacgccaaa acgatccgca
     5821 ttgaaccgcc actgacactg accattgaac agtgtgaact ggtgatcaaa gcggcgcgta
     5881 aggcgctggc ggccatgcga gtaagtgtcg aagaagcgta atatcaaatc ggatggcgat
     5941 acgacgtc
//
LOCUS       DAJVUN010000214         5846 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.215, whole genome shotgun sequence.
ACCESSION   DAJVUN010000214 DAJVUN010000000
VERSION     DAJVUN010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5846
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.215"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            150..266
                     /locus_tag="OQQ76_003647"
     CDS             150..266
                     /locus_tag="OQQ76_003647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004996477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1969983.1"
                     /translation="MPGIPPEIRWNNQKNALQLWNKEGGVVRREGDPLEMAQ"
     gene            682..1473
                     /locus_tag="OQQ76_003648"
     CDS             682..1473
                     /locus_tag="OQQ76_003648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014714129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HCS1969984.1"
                     /translation="MYHHVSHCPGLVTLSPVTFRKQMKWLAENNWKTLSSDELEFFYR
                     GGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLITGFIGNGPVRHSPGKEYS
                     HRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTHTRWDKKFSSREEQCKHL
                     RQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELGFYYLYTTERRMNAPAKG
                     TTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPRLPDD"
     gene            1476..2564
                     /gene="capU"
                     /locus_tag="OQQ76_003649"
     CDS             1476..2564
                     /gene="capU"
                     /locus_tag="OQQ76_003649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hexosyltransferase CapU"
                     /protein_id="HCS1969985.1"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTW
                     KHPFRIIRQKTYLTRKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
                     QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
                     ARQAKQDIEERFDINKTALKILTLAKHK"
     gene            2569..3519
                     /gene="virK"
                     /locus_tag="OQQ76_003650"
     CDS             2569..3519
                     /gene="virK"
                     /locus_tag="OQQ76_003650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor VirK"
                     /protein_id="HCS1969986.1"
                     /translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
                     VVSIRYYYELRSLPCIEDILAIHPTLPARIHRPYLHKGGRAWTRGQYILEHYRFVQNL
                     PEKYSKFLFPQKSVSLVQFIGKDGENFDIQCSPSGFDREGELMLSLFYNKTVITRLTF
                     SVILTQNGHIAFIGGLQGAPKNTGPDVIRCATRACYGIFPKRIIFEAFCALMKACNIS
                     ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYRLPTQVIRKPLSD
                     IASKKRSEYRKRYALLDYIHETTIRSLDAYPVHSEHQDLN"
     gene            3584..4528
                     /gene="lpxM"
                     /locus_tag="OQQ76_003651"
                     /gene_synonym="msbB"
     CDS             3584..4528
                     /gene="lpxM"
                     /locus_tag="OQQ76_003651"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858371.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HCS1969987.1"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWSTWFLLGMIAGISMFPPSFRDP
                     VLAKIGRWAGRLSKKARRRATINLSLCFPEKSDTEREIIVDKMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRYNNKNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
                     ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
     gene            complement(4682..5713)
                     /locus_tag="OQQ76_003652"
     CDS             complement(4682..5713)
                     /locus_tag="OQQ76_003652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HCS1969988.1"
                     /translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
                     DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
                     FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIRDPHKDEK
                     MAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKYYLAGA
                     LHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWLK
                     ENPKFRVIYQPVYSPWVNHAERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPFP
                     GGKHGLAKV"
BASE COUNT         1580 a         1191 c         1372 g         1703 t
ORIGIN      
        1 gttatcggtg gcaatagcct gtgcaaattt tttataaccc gggatcgtgt caggattcag
       61 agtatgataa agacagattt tcatggctgc cggtttccgt cgtgcaaaaa acatgctgat
      121 tttacgaagg aatgccttac tgaacaacct tgcccggaat accccccgaa atcagatgga
      181 acaatcagaa aaatgctctg cagttatgga ataaagaagg tggggtggta cgccgggagg
      241 gcgatccgct ggaaatggcg cagtagctgc aggcctgtca tgatgccgga atagaagttc
      301 gtgtacaggt taatgaaagc gtcaccccgt aaataaactc tgcgctgaaa ttcctttttt
      361 tcattggagc acctgtgttg ttctgaggtg aacatatcac ctctgttcag gtagccaaat
      421 tcagtgtgcc acctcaaggt tcttagtgag tcgtttttaa aagatatgat aatatatcat
      481 tgtttatgaa ttgttgatgt ttaatttagt aaaatatatc aagtatgcca tgggtttgct
      541 atgttattca tccagtatct ggaaataaaa tgcaccagct ttattgggtt ttccttttgt
      601 ctctgcttac tgggtgccag aaactttaaa tgttaaacga aggggggcat tttgttcaaa
      661 gccaatcatg ttccggtatt aatgtatcat catgtcagtc attgccccgg actggttaca
      721 ctttctcccg tgacattccg gaagcaaatg aaatggttgg ctgaaaacaa ctggaaaaca
      781 ctgtcatcag atgaactgga gtttttttat cggggcggaa aactcccccg gaaaagcgtt
      841 atgttgacat ttgatgatgg ataccttgac aactggtttc aggtatatcc tttattaaaa
      901 gagtttaatc tcaaagcaca tattttttta attaccggtt ttattgggaa tggtccggtt
      961 cgtcactctc ctggaaagga atattctcat cgcgattgcg aacatcaaat agcgacaggg
     1021 aatgctgata atgttatgct tcgctggtct gaagtaaacg aaatgttgca atctggtctg
     1081 gtcgaatttc atgttcatac gcatactcat acacgctggg ataaaaagtt cagttcacga
     1141 gaagaacagt gtaaacatct tcggcaggac ttgttgagcg ggagagaata tttgaaagaa
     1201 atgacaggaa aatgcagtaa acatttgtgt tggccggaag gttattataa caaggattat
     1261 attcaggtcg ctgaagaact tggattctat tatttatata caacagaaag aagaatgaat
     1321 gctcctgcta aaggaactac acggatagga agaataagca ccaaagaacg ggaaagttgc
     1381 gcatggctga aaagacgact tttttattat acaacaccgt ttttttcatc gttgctggcc
     1441 tttcataagg ggccaagatt accggatgat taataatgaa tatactattt acggaatcat
     1501 caccgaatat aggtggtcag gaattacagg ctgttgctca aatgaaggcc ctgaagaaaa
     1561 tggggcattc agttctgctt gtctgcaggg aaaacagcaa aattgctttt gaagccagta
     1621 aattgggaat tgatatcaca ttcgcgttat ttcgaaacag tcttcacatc cctactgcat
     1681 ggagattact cggaatagtt catggttttc agcccaatgc aatcgtttgt cacagtgggc
     1741 atgatagcaa tattgttggt ttagtacggt tattcacttg gaaacatcca ttcagaatta
     1801 tcaggcaaaa gacatatttg acacgaaaaa caaaagtttt ttcaataaat catttttgcg
     1861 atgaggtgat tgttcccgga acaagtatga agacacatct ggagcaggaa ggatgtcgaa
     1921 cccgggttac tgttgtgcct ccaggctttg atttccagaa attatacgtt gattcccgaa
     1981 acagtttgcc tccaaatgtt ctttcttggc tggcgtcccg aaggggatgc cccgttattg
     2041 ctcaggtagg aatgttgcgc ccggaaaaag ggcacgaatt tatgttgaat ttactgttcc
     2101 atttaaaaat gaatggacga cagttctgtt ggttgattgt ggggtctggt tcgcctgaac
     2161 tgcgggagca tttacagtat cagattgaca gtatgggcat gcatgatgat gtttttattg
     2221 ctgacaatgt ttttcctgcc gcccccgtat atcgggttgc cagtctggtg gttctgcctt
     2281 cagaaaacga atcgtttggt atggtactgg cagaagcatc ggcattttct gtgcctgtac
     2341 tggccagtca gattggtgga atccctgatg ttattcagaa caaccagacc gggacattgt
     2401 taccagcagg taataagcac gcatggatgt gcgccctgaa tgattttttt aatgaccctg
     2461 ggcgttttta tcagatggct cgccaggcaa aacaggatat agaagagcgg tttgatatta
     2521 ataaaactgc gttaaaaata ctcacattag cgaagcacaa gtaacaatat gttttctgta
     2581 agtaacttat catttatcgg tttccttaaa aggattgttt tttcctcaga ttcactcccg
     2641 gggaagtggg aacacagaaa attccggttc atgtacattt tgcgatgtgc tataaatccg
     2701 gttgtcagta ttcgatatta ttacgaactg cgttccttgc cgtgcattga ggatattctg
     2761 gcaatacacc ccacgttgcc agcaagaatt catcgccctt atttgcataa aggggggcgc
     2821 gcctggaccc gtggacaata tattcttgag cattatcgct ttgtgcaaaa tttgccagaa
     2881 aaatattcta aatttttgtt tccacaaaaa tcggtatcat tagtccaatt catcgggaaa
     2941 gatggagaga attttgatat ccagtgttct cccagtggtt ttgaccggga aggagagttg
     3001 atgttgtcat tgttttacaa taaaacagtt attacccggt taacattttc agtcattctg
     3061 actcaaaatg gacacattgc ttttattggc ggattacagg gagcccctaa aaataccgga
     3121 cctgatgtta ttcggtgcgc aacccgggcc tgttatggga ttttcccaaa acggattatt
     3181 tttgaagcat tttgtgcgtt gatgaaagct tgcaatatct ctgagtgtct ggcagtcagt
     3241 gagcacagtc atgttttccg gcaattgaga tactggtatc agaaacgcaa aacctttgtt
     3301 gcggtctata gtgatttctg ggagtctgta gcaggaaaaa cctgtggtga ctggtacaga
     3361 ttaccaaccc aggtgattcg aaagccgcta agcgatatag ccagtaaaaa acgctctgag
     3421 taccgaaaac gatacgcttt gctggattat atccatgaaa ctactatccg ctctttggat
     3481 gcatatcctg tacactcaga acatcaggat ttaaattaag gtttgatgta ttctctgaat
     3541 aaaacagtaa tgataatttt ggtagaggca ttcgcactaa ataatgaaaa aatataaatc
     3601 tgagtttatt cctgaattta agaaaaatta tctttcccct gtttactggt ctacatggtt
     3661 ccttttggga atgattgcag gtatttcaat gtttccccct tcattcagag atcctgtctt
     3721 ggcaaaaata gggcgttggg cgggcagatt gagcaaaaaa gctcgtcgca gggcgacgat
     3781 taatttatcg ctttgtttcc cagaaaagag tgatacagaa cgggaaataa ttgtcgacaa
     3841 aatgtttgcc acagcattgc aatccatagt gatgatggca gaactggcaa ttcgtggtcc
     3901 ggaaaagttc cagaaacgag tgttctggaa aggcctcgaa attcttgagg aaattcgata
     3961 caataacaaa aatgtgattt ttctggttcc ccatggctgg agcgtggata ttcctgcaat
     4021 gttgctggca gctcaggggg aaaaaatggc cgccatgttt catcagcaac gaaatccagt
     4081 gattgattat gtctggaatt ctgtacggcg taaattcggg gggcgcttac attcccggga
     4141 ggatgggata aaaccattta ttcagtcagt acgccaggga tactgggggt attaccttcc
     4201 agatcaggat catggtcctg aatacagtga atttgctgat ttttttgcga cctataaagc
     4261 gacattacca attattggac gtctgatgaa catcagtcag gctatgatta taccgctttt
     4321 cccggtttat gatgaaaaaa aacatttcct gactattgaa gttcggccac caatggatgc
     4381 atgcattgcc agcgcggaca ataaaatgat tgcccgacaa atgaacaaaa cagtggaaat
     4441 tttggtgggg tcacatccgg aacagtatat ctgggtttta aaattgttaa aaacgcgcaa
     4501 atcaaacgaa gcggacccgt acccttgaaa ttataaagta caggtatttc cactagttgt
     4561 ttcttacagg ttaccaatcg aaacacatcc cccttccgtg tgttgcccgt ttggcacgga
     4621 ggactgtgta gatgcagttc gttaaattta atttatgcct aaatagctgc gcttaatacc
     4681 gctacacttt tgccagtcca tgtttgcctc cggggaatgg gctgacggtt tccataaaat
     4741 ggcgaacttt tttcaacagt tgccacattg agcggcactg atgattacgc gttattgtgt
     4801 cgtgaagtgc ctgccatagc cgttcagcat gattcaccca tggcgagtaa accggctgat
     4861 aaatgaccct gaacttcggg ttctccttca gccagctctg tgtttcccgg cttttgtgga
     4921 taatgtagtt gtccacgatc agcgtgatgg ttttcgcccg acggtatgtc gctttaagcc
     4981 gcttcagcag gctgatgaac agcgccgaac ttttgctgtt gccgcccaca tagctgactt
     5041 tacctgtccc gctgtgcagc gctccggcca gataatattt ttcattctgt cccggcgtga
     5101 ccacccgttt ttgctgtccg cgcagttgcc agtccgcacc gattttggga tgaagatgga
     5161 tatccacttc atcttcataa aagaccggat gctctgcgct gcattcgtcc agtgctttat
     5221 ggattgctgc catcttttca tctttatgcg ggtcacggat acgcagagtt ggcgcagccc
     5281 ttcgccacac aatccccgca gacggcaacc agcggcgaac ggttccggca tttaactggc
     5341 aaccggttat ctcattgatt tttattgcca gcagttctgt actccagcgt gaacgctggt
     5401 agccaaagtc gccgggagaa tgttttacca gctcacgtaa cagtgtgcag atatgctcaa
     5461 acggccagcg acgggcacgc ccggcaggta atgatttcag tccctcaaca cccgactgcg
     5521 tgaaccagtt aatccagcgt ccaacagagg aacgggcgca gcagagcgtt ctggcaacgt
     5581 cgctgacacg gtcgccccgg tgcagcatca gcatggcagt cagtctgcgg gcataatttt
     5641 tatcgtgtgt tttatggatg gctttctgca tcaggcgtcg ttcgtcacgg gaaattggtg
     5701 ctatgatcgg cattgctcag tccggttggt gatttgtttt gatttggcga ttgatcagat
     5761 cgcacaatcc gggctaagtt ccctcaaagg gatctactat tccgcgcagc tatttaggct
     5821 gtgtccctta attacgtaag cgttga
//
LOCUS       DAJVUN010000215         5818 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.216, whole genome shotgun sequence.
ACCESSION   DAJVUN010000215 DAJVUN010000000
VERSION     DAJVUN010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5818
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.216"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..857
                     /gene="pdeC"
                     /locus_tag="OQQ76_003653"
     CDS             <1..857
                     /gene="pdeC"
                     /locus_tag="OQQ76_003653"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HCS1969989.1"
                     /translation="FALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYY
                     QPIIDIKTEKCIGAEALLRWPGEQEQVMNPAEFIPLAEKEGMIEQVTDYVIDNVFRDL
                     GDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVEK
                     MTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIA
                     EHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLP
                     ARELTRGQ"
     gene            complement(860..1183)
                     /gene="soxS"
                     /locus_tag="OQQ76_003654"
     CDS             complement(860..1183)
                     /gene="soxS"
                     /locus_tag="OQQ76_003654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide response transcriptional regulator
                     SoxS"
                     /protein_id="HCS1969990.1"
                     /translation="MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRT
                     VTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSD
                     YRHRL"
     gene            1269..1733
                     /gene="soxR"
                     /locus_tag="OQQ76_003655"
     CDS             1269..1733
                     /gene="soxR"
                     /locus_tag="OQQ76_003655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HCS1969991.1"
                     /translation="MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG
                     NQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREEL
                     DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN"
     gene            2279..3628
                     /gene="ghxP"
                     /locus_tag="OQQ76_003656"
                     /gene_synonym="yjcD"
     CDS             2279..3628
                     /gene="ghxP"
                     /locus_tag="OQQ76_003656"
                     /gene_synonym="yjcD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanine/hypoxanthine transporter GhxP"
                     /protein_id="HCS1969992.1"
                     /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI
                     VVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG
                     QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANG
                     VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGL
                     IFDPNVHFSGVFGMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI
                     RAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTG
                     LTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL
                     VTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI"
     gene            3780..5429
                     /locus_tag="OQQ76_003657"
     CDS             3780..5429
                     /locus_tag="OQQ76_003657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HCS1969993.1"
                     /translation="MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWP
                     TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGF
                     LIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL
                     VSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP
                     ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA
                     MLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGW
                     LWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFP
                     ARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAI
                     QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAA
                     LRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ"
     gene            complement(5583..>5818)
                     /locus_tag="OQQ76_003658"
     CDS             complement(5583..>5818)
                     /locus_tag="OQQ76_003658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HCS1969994.1"
                     /translation="MFNTRLYRVNFDEASVQGMGISILRGEENIPIDSDTLVTLQKFF
                     EEDCTSHTGMSQTEDNINAVAMKITADIMQYAD"
BASE COUNT         1257 a         1376 c         1604 g         1581 t
ORIGIN      
        1 tttttgcgtt gcccgccggt attttgggga gtcttgttct gctattactc tggctacgta
       61 ttcgacaaaa ctatttgtct cccaaacgca aattgcaacg cgctctagaa aaacatcaac
      121 tttgtcttta ttaccagcca ataatcgata tcaaaacaga aaaatgtatc ggcgctgaag
      181 cgttgttacg ttggcctggt gagcaggagc aagtaatgaa tccggcagag tttattccgc
      241 tggcagaaaa ggaggggatg atagaacagg taactgatta tgttattgat aatgtcttcc
      301 gcgatctggg cgattacctg gcaacacatg cagatcgcta tgtttctatt aacctgtcgg
      361 cctccgattt tcatacgtca cggttgatag cgcgaatcaa tcagaaaaca gagcaatacg
      421 cggtgcgtcc gcagcaaatt aaatttgaag tgactgagca tgcatttctt gatgtcgaaa
      481 aaatgacgcc gattattctg gctttccgcc aggctggtta cgaagtggca attgatgatt
      541 ttggtattgg ctactctaac ttgcataacc ttaaatcatt gaatgtcgat attttgaaaa
      601 tcgataaatc gtttgttgaa acgctgacca cccacaaaac cagtcatttg attgcggaac
      661 acatcatcga gctggcgcac agcctggggt taaaaacgat cgctgaaggc gtcgaaactg
      721 aggagcaggt taactggctg cgcaaacgcg gcgtgcgcta ttgccaggga tggttttttg
      781 cgaaggcgat gccgccgcag gtgtttatgc aatggatgga gcaattaccc gcgcgggagt
      841 taacgcgcgg gcaataaaac tacaggcggt ggcgataatc gctgggagtg cgatcaaact
      901 gccgacggaa aacgcgggag aaggtctgct gcgagacata acccaggtcc attgcgatat
      961 caaaaatcgg acgctcggtg gtgcgcaact caacggcggc cagtaacagg cgacgttggc
     1021 gaatgtaatc gccaagcgtc tgatgcgtca ccgtgcggaa cattcgttgc aagtaccact
     1081 ttgaatagcc tgattttttt gcgactacat caatgttaag cggctggtca atatgctcgt
     1141 caatccatgc gataagatcc tgaataattt tctgatggga cataaatctg cctcttttca
     1201 gtgttcagtt cgttaattca tctgttgggg agtataattc ctcaagttaa cttgaggtaa
     1261 agcgatttat ggaaaagaaa ttaccccgca ttaaagcgct gctaaccccc ggcgaagtgg
     1321 cgaaacgcag cggtgtggcg gtatcggcgc tgcatttcta tgaaagtaaa gggttgatta
     1381 ccagtatccg taacagcggc aatcagcggc gatataaacg tgatgtgttg cgatatgttg
     1441 caattatcaa aattgctcag cgtattggca ttccgctggc gaccattggt gaagcgtttg
     1501 gcgtgttgcc agaagggcat acgttaagtg cgaaagagtg gaaacagctt tcgtcccaat
     1561 ggcgagaaga gttggatcgg cgcattcata ccttagtggc gctgcgtgac gaactggacg
     1621 gatgtattgg ttgtggctgc ctttcgcgca gtgattgccc gttgcgtaac ccgggcgacc
     1681 gcttaggaga agaaggtacc ggcgcacgtt tgctggaaga tgaacaaaac taaagcgcca
     1741 caagggcgct ttagtttgtt ttccggtctt tgtctttctc tctatcccgc tggtacacag
     1801 gagggtttcc cccgacgtca acacacctca ttcgagcacg tggtggaggt tccggttggt
     1861 gttgatgctt taattgtatg tcaccgacgt ttcttcgcca gtgtaaaagt atacttttta
     1921 accgcaatat ttttgtcatc tcagacgatt ttttatcgca atcctgaacg gtatacggct
     1981 cgatagcgct gcaatcttgc gcaccgacga taacgtttgc gcatcaattg cctgtttttt
     2041 catcgtcaag acaataaaag agaaaaaagc agcaaacttc ggttgaaaaa gccgctatga
     2101 tcgccggata atcgtttgct ttttttacca cccgttttgt atgcgcggag ctaaacgttt
     2161 gcttttttgc gacgcagtaa attgtcgcaa acctggagca ggaagataac gtttcgctgg
     2221 caggggattg tccgccacgc atcttgacga aaattaaact ctcaggggat gttttcttat
     2281 gtctacgcca tcagcgcgta ccggcggttc actcgacgcc tggtttaaaa tttcacaacg
     2341 tggaagcact gtccgtcagg aagtggttgc cgggttaaca acgtttctgg cgatggtcta
     2401 ctcggtcatc gtcgttccag gtatgttggg taaagcaggc ttcccgcctg cggcagtttt
     2461 cgttgcaacc tgtctggttg ccggactcgg ttctatcgtg atgggtctgt gggctaatct
     2521 gccgttggcg attggttgcg ccatctccct gacggcgttt accgcattca gcctggtgct
     2581 ggggcaacat attagcgtac ctgtcgcgct gggtgccgtg ttcctgatgg gtgtgctgtt
     2641 tacggtaatt tctgccacgg gtatccgtag ctggattttg cgcaacttgc cgcacggtgt
     2701 ggcgcacggc acggggatcg gtatcggtct gttcctgctg ctcattgccg ctaatggtgt
     2761 tggtctggtg attaaaaacc cgcttgatgg tttgcccgtt gcgctgggtg atttcgcgac
     2821 cttcccggtg attatgtcac tggtaggtct ggcggtgatc atcggcctgg aaaaactgaa
     2881 agtccctggt ggcattctgc tgaccattat cggtatctca attgtcggtt tgatcttcga
     2941 tcctaacgtc catttctccg gcgttttcgg catgccttca ttgagcgatg aaaacggcaa
     3001 ttcactgatt ggcagcctgg acattatggg cgcgctgaat cctgtagtcc tgccaagcgt
     3061 tctggcgctg gtgatgacgg cagtatttga tgccaccgga actatccgtg ccgtcgccgg
     3121 ccaggcgaac ctgctggata aagatgggca gatcatcgac ggtgggaaag cactgaccac
     3181 tgactccatg agcagcgttt tctctggcct ggtgggtgct gctccggcag cggtatacat
     3241 cgagtctgcg gcgggtacgg cggcgggcgg taaaaccggt ttgacggcta tcaccgttgg
     3301 cgtgctgttc ctgctgattc tgttcctctc tccgctctct tacctcgttc cggggtatgc
     3361 aacggctccg gcgctgatgt acgttggcct gctgatgctg agcaacgtgg cgaaaatcga
     3421 ctttgctgat tttgttgatg cgatggcggg tctggttacg gcggtattca tcgtgctgac
     3481 ctgtaacatc gtaacaggca tcatgatcgg cttcgcgact ctggtgattg gtcgtctggt
     3541 ttccggcgaa tggcgcaagt tgaacatcgg tacggtcgtt atcgccgtgg cgctggtgac
     3601 cttctatgcg ggtggctggg ctatctaatc tttcatcgga ttctgaaaac gggtggcaat
     3661 ggctgcccgt ttttattttc tccgcacatt gtgtgagctt ttgcgatatt ctgaaaaaat
     3721 gagaattcag gcataacgcc tttctcagat cataaaaaaa catcgcaaac agggaacgca
     3781 tggaaatctt cttcaccata ctgataatga ccctcgtggt ctcgctgtcc ggggtggtca
     3841 ctcgtgtcat gccctttcag atcccgcttc cgcttatgca aatcgccatc ggtgcgctac
     3901 tggcgtggcc gacgtttggt ttgcatgtgg agtttgatcc tgaactcttt ttagtcttgt
     3961 ttatcccgcc gttgctgttc gctgatggct ggaaaacgcc gacccgtgaa tttctcgaac
     4021 atggtcgaga gattttcggc ctcgcgctgg cgctggtggt ggtcaccgtg gtcggcattg
     4081 gcttccttat ttactgggtg gtgccgggca ttccgctgat ccccgccttt gcgctggcgg
     4141 cggtactttc tccgaccgat gctgtggcgc tctccgggat tgttggcgaa gggcgcatcc
     4201 cgaaaaaaat catgggcatt ttgcagggcg aagcgttgat gaatgacgcc tccggcctgg
     4261 tgtcgttgaa gtttgccgtg gcagtggcga tggggacgat gatcttcacc gtcggcggtg
     4321 cgacggtcga atttatgaaa gtagccattg gtggtattct tgccggtttt gtggtgagct
     4381 ggctgtatgg tcgctcgctg cgattcctca gccgctgggg cggtgatgaa cccgcgacgc
     4441 agatcgttct gctgttcttg ctgccattcg cttcttatct gattgccgaa catattggcg
     4501 tttccggcat cctcgctgcg gttgccgccg ggatgaccat cacccgctcc ggtgtgatgc
     4561 gccgtgcgcc gctggcaatg cgcctgcgcg caaacagcac ctgggcgatg ctggaatttg
     4621 tctttaacgg catggtgttc ctgctgttag gtctgcagct gccgggtatt ctggagacgt
     4681 cgctgatggc ggcagaaatc gaccctaacg tcgaaatctg gatgctgttt accgatatta
     4741 ttctgatata tgcggcgctg atgctggtcc gtttcggctg gctgtggacg atgaaaaagt
     4801 tcagcaaccg cttcctgaag aagaagccga tggagtttgg ttcgtggacc acacgagaaa
     4861 tcctgatcgc gtctttcgcc ggggtgcgtg gggcgatcac tctggccggt gtgctctcta
     4921 tcccgctgct cttgccggat ggtaacgtct tcccggcgcg ctatgagctg gtgttcctgg
     4981 cggctggcgt cattctcttc tcgctgtttg tcggcgtggt gatgttgcct attctgctac
     5041 aacacattga agtcgcggat cattcgcaac aattgaaaga ggaacgtatt gcgcgagcgg
     5101 caacggcaga agtggcgatt gtggcgatcc agaaaatgga ggagcgtctg gcggcggata
     5161 ccgaagagaa tatcgataac cagctgctta cggaggtcag ttctcgcgtc attggtaacc
     5221 tgcgtcgtcg cgccgatgga cgtaacgacg ttgaaagttc cgtgcaggaa gagaaccttg
     5281 agcgtcgctt ccgtctggcg gcattgcgtt ctgaacgtgc tgaactgtac cacctgcgcg
     5341 ccacgcggga gatcagcaac gaaacgctgc aaaaattact gcacgatctc gatttgcttg
     5401 aagcgttgct aattgaggaa aatcagtaag ccgaaagcga cgtaaccagg cccgaggtaa
     5461 tctgaaaaag gtgcaatctt ttgcaccttt aacaggttag ctcgggctaa cattcatgat
     5521 tctaaaacaa ataagttatc tctcttgtaa agtcaattca ttggctgttc ttcgacttaa
     5581 cctcaatctg cgtattgcat aatatctgca gtaatcttca tagcgactgc attaatatta
     5641 tcctcagttt gtgacatgcc agtatgagag gtacaatctt cttcaaagaa tttctgtagt
     5701 gttaccaggg tatcactatc aatggggata ttttcctctc cacggagtat ggaaatgccc
     5761 attccctgga cgctagcctc atcaaaatta acccgataga gacgggtatt aaacatac
//
LOCUS       DAJVUN010000216         5811 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.217, whole genome shotgun sequence.
ACCESSION   DAJVUN010000216 DAJVUN010000000
VERSION     DAJVUN010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5811
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.217"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            120..287
                     /gene="rmf"
                     /locus_tag="OQQ76_003659"
     CDS             120..287
                     /gene="rmf"
                     /locus_tag="OQQ76_003659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HCS1969995.1"
                     /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGW
                     REAMADRVVMA"
     gene            complement(357..875)
                     /gene="fabA"
                     /locus_tag="OQQ76_003660"
     CDS             complement(357..875)
                     /gene="fabA"
                     /locus_tag="OQQ76_003660"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014915875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HCS1969996.1"
                     /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT
                     ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG
                     KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD
                     LKVGLFQDTSAF"
     gene            complement(944..2704)
                     /locus_tag="OQQ76_003661"
     CDS             complement(944..2704)
                     /locus_tag="OQQ76_003661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon protease family protein"
                     /protein_id="HCS1969997.1"
                     /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF
                     ALEQLLHTRASSSFMLAKAPEESEYLNLIADAARTLQSDAGQLVGDHYEVSGHSIRLR
                     HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
                     LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE
                     MEPELSEQAIYSEFEDTLQIVDAESVSQWCRWVTFTARHNHLPAPGADAWPVLIREAA
                     RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE
                     ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE
                     LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA
                     LADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR
                     HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ
                     QEGRHRFPWPLRWLNWFIPN"
     gene            2890..3342
                     /gene="matP"
                     /locus_tag="OQQ76_003662"
     CDS             2890..3342
                     /gene="matP"
                     /locus_tag="OQQ76_003662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HCS1969998.1"
                     /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL
                     LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ
                     RLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKLDLQALLGKE"
     gene            complement(3418..4458)
                     /gene="ompA"
                     /locus_tag="OQQ76_003663"
     CDS             complement(3418..4458)
                     /gene="ompA"
                     /locus_tag="OQQ76_003663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HCS1969999.1"
                     /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF
                     INNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA
                     KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL
                     EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLK
                     SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER
                     RAQSVVDYLISKGIPVDKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV
                     KGIKDVVTQPQA"
     gene            complement(4815..5324)
                     /gene="sulA"
                     /locus_tag="OQQ76_003664"
     CDS             complement(4815..5324)
                     /gene="sulA"
                     /locus_tag="OQQ76_003664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SulA"
                     /protein_id="HCS1970000.1"
                     /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM
                     MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES
                     MVRALRTGNYSVVIGWLADDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSG
                     LKIHSNLYH"
     gene            5543..>5811
                     /gene="sxy"
                     /locus_tag="OQQ76_003665"
     CDS             5543..>5811
                     /gene="sxy"
                     /locus_tag="OQQ76_003665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HCS1970001.1"
                     /translation="MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVS
                     DGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWR"
BASE COUNT         1513 a         1433 c         1430 g         1435 t
ORIGIN      
        1 gtggcgtgaa ttttgcgcat tgacggcagt tatgattcgc ggtattgctt aactgtgatt
       61 gcacatttag taatcactgt tttcttttcc accagaaacc agtatgaggg aaacgaggca
      121 tgaagagaca aaaacgagat cgcctggaac gggcacatca acgtggttat caggccggca
      181 tcgccggacg ctcaaaagaa atgtgtccct atcagacgct gaatcaaagg tcacaatggc
      241 tgggaggctg gcgagaagcc atggcggaca gggtagtaat ggcctgattc tgtctcttta
      301 aaaagaaacc tccgcattgc ggaggtttcg ccttttgata ctctgtctga tgataatcag
      361 aaggcagacg tatcctggaa cagaccgact ttcaggtcgc tggcggtata gatcagacga
      421 ccatcaacca gcacttcgcc atctgccaga cccataatca gacgacgatt aacaatgcgt
      481 ttaaagtgaa tacggtaggt cacttttttc gctgtcggca gtacctgacc agtgaatttc
      541 acttcgccaa cgcccagcgc gcggccttta ccttcgccgc ccagccagcc gaggtagaac
      601 cctactagct gccacattgc gtccaggccc aggcatcccg gcataaccgg atcgccaatg
      661 aagtggcatc cgaagaacca cagatccgga ttgatatcca gttctgcttc aacataccct
      721 ttgtcgaagt taccacccgt ttcggtcatt ttgaccacac ggtccatcat cagcatgttc
      781 ggtgctggca attgcgggcc tttagcgcca aacagttcac cgcgaccaga ggcaagaagg
      841 tcttcttttg tataggattc gcgtttatct accatgttct ctgtaagcct tattttattg
      901 aagcacgcag gatagctaac acgtgtacgc tgaacaagtc cgatcagttc ggaataaacc
      961 agttcagcca acgtaatggc catggaaaac ggtgacgtcc ttcctgttgc gatgcttgcg
     1021 cgatacgttc ctggatggtt tgcatcagcg tcgtttggcc ttcgccatcc cacaccagat
     1081 ttaataataa cggcagtgcg tcagtcacat cgtctactgc ccagatggtg aatttgcctt
     1141 cttctaccgc tttcaccagt tcactgtgaa gacttaaatg gcgaacgtta gctgtgggga
     1201 taatgacacc ttgtttcccg gttaactcac gttgctggca aatagcaaag aagccttcga
     1261 ttttctcatt taaaccaccg accggctggg cgcgaccgaa ctgatcgact gaacctgtga
     1321 tagcgatact ctgattcacc ggcacatcgg cgagggcgct tatcagggcg cagagttcag
     1381 ccatcgaggc actatctcca tcaacttcac tgtatgactg ctcaaatgtc agcgatgctg
     1441 agaaggggat ctgttgctca agctgtagtt ccgacatcag gaacgcttgc atgatcatca
     1501 tccctttcgc atggatattg ccgccaagtt ccgctttgcg ttcgatgtcg gtgaattcac
     1561 catcgccaat atgcacaacg cagctaatgc gagaaggttc gccaaaagcg cgtggatgac
     1621 ccggaaattc aatgaccgaa agggcgttaa tttgcccgat gcgttcgcct tcggtttcaa
     1681 tcaggatttg ctcctgaagg atctcatcct gcatacgttc agcgaggaaa ccttcgcgcc
     1741 attcacgctg ctgcagcatt aagtttagct gctcgccgga gaaggtgtcg ccatcacaca
     1801 gggaggcgac ctctttacac tggcggagga tccactgcgg gctaagcgga agtgtttctt
     1861 gttcaccggt gtagcgtgct gcttcgcgga taagtaccgg ccaggcatcc gctcccgggg
     1921 caggtaagtg attatgtctg gcggtaaatg tcacccagcg acaccactgg cttactgact
     1981 ccgcatcgac aatctgcaga gtatcttcaa attcgctata aatagcctgc tctgaaagct
     2041 ctggctccat ctcctggaaa tcagccaatg attcgcgttc gcctaccaga atgactttca
     2101 gcttcaatgg catcgaaggc acagagacgg ggagagggcg cgactcatca aacgcaaccc
     2161 agtcaaaacg ctcgcggtta acgatatttt tcagccgcat ccacagcaga ggttgcgcca
     2221 gcagtgtacg caaagagatg atgagaatac cgccatttgc ctgatgcacc agaccaggct
     2281 gcagggtaat gtcgccatta aactggcgca ggcagccaaa gagttgctcc gcttctaccc
     2341 agtcggcagc gacaacttgc gttaaagtcg caaaattatc atctgcactc actgcgtgac
     2401 gtaagcggat ggagtggccg gaaacctcat agtgatcgcc caccagttgg cctgcatcgc
     2461 tttgtagcgt acgcgcggca tcggcaataa gattcagata ctcagactct tccggggcct
     2521 tagccagcat aaaagaggag gatgctcgcg tatgcagcaa ctgctccagc gcaaattgca
     2581 gccgcggttg agtatcactg aataaaggat cgttttcgtc aatcaaatgt ggctgagcaa
     2641 atatttcctg atagctatcg gtatcaggaa ccaggtcacg ccatgcaagt ttcgtaatgg
     2701 tcaaagttga tgttttttag tctgttgtca aagccgcgat tataccgtaa ccggcactac
     2761 agcacacgta gaaagcaccg acaatactcc tggcatgggc gttaaagctc acaggatgga
     2821 gattcttttc ttcactggcc taaaaagctg atattctgta aagagttaca cggtaacatt
     2881 gagatcgcta tgaaatatca acaacttgaa aatcttgaaa gcggttggaa atggaagtat
     2941 ctggtgaaga agcatcgcga aggggagtta attacccgtt acatagaagc cagtgccgcc
     3001 caggaagccg tcgatgtgtt gctctcgctg gaaaatgaac ccgtgctggt aaatggctgg
     3061 attgacaagc atatgaatcc ggaactggtc aatcgcatga agcaaaccat tcgtgccaga
     3121 cggaagcgcc attttaatgc ggaacaccag catacgcgca aaaagtcgat cgatctggaa
     3181 tttattgtct ggcaacgtct ggctggtctt gcgcagcgtc gcggtaaaac gctttctgaa
     3241 acgattgttc agctgattga agatgcggaa aacaaagaga aatacgcgaa taaaatgtct
     3301 tctctgaagc tggatctgca ggcattgctg ggtaaggaat aactgacgaa agtcagttca
     3361 atttactaaa ggcaaaaaaa accccgcagc agcggggttt ttctaccaga cgataactta
     3421 agcctgcggc tgagttacaa cgtctttgat acctttaact tcgatctcta cgcgacgatc
     3481 cggagccagg cagtcgatca gtgcagcacg ctgtttcacg ttgtcacagg tgttgccagt
     3541 aaccgggttg gattcgccca taccacgtgc ggagatcttg tctaccggga tacctttgga
     3601 gatcaggtaa tcaacaacag actgagcacg gcgctcggac agaccctggt tgtaagcgtc
     3661 agaaccgatg cggtcggtgt aacccagaac aactacggaa ccgtctttcg gatccaagtt
     3721 gctcagctgg ctgtacagct gatccagagc agcctgacct tccggtttca gggttgcttt
     3781 gttgaagttg aacagaacgt cagacttcag agtgaagtgc ttggtctgta cttccggtgc
     3841 cggagctgga gccggagcaa ctactggagc tgcttcgccc tgaccgaaac ggtaggaaac
     3901 acccaggctc agcatgccgt tgtccggacg agtgccgatg gtgtgtgcgt caccgatgtt
     3961 gttggtccac tggtattcca gacgggtagc gatttcagga gtgatcgcgt actcaacacc
     4021 gccagcgaag accggagaaa cgccggtgtc gtggttttta ccataaacgt tggatttagt
     4081 gtctgcacgc cataccatac cacccagacg agtgtagatg tccagatcgt cagtgattgg
     4141 gtaacccagt ttagcggtca gttgaacgcc ctgagctttg tatgcaccgt tttcaacgct
     4201 gcctttgtac ggcatacgac ctaaccagtc gtaacccatt tcaaagccaa catacgggtt
     4261 aacctggtaa ccaccaaaag caccagcgcc cagttggttt tcatgggtcg ggccattgtt
     4321 gttgatgaaa ccagtgtcat ggtactggga ccagcccagt ttagcaccag tgtaccaggt
     4381 gttatctttc ggagcggcct gcgctacggt agcgaaacca gccagtgcca ctgcaatcgc
     4441 gatagctgtc tttttcattt tttgcgcctc gttatcatcc aaaatacgcc atgaatatct
     4501 ccaacgagat aacacggtta aatccttcac cgggggatct gctcaatatt aactctaccg
     4561 atatcttcgg cttatgccga gcacccctag cgatgtaaag tctacaacgt agttgaaaac
     4621 ttacaagtgt gaactccgtc aggcatatga aaaaaaagtc ttgtataagg tatgtttaat
     4681 cttttttgtc agcgacaatt tacagaagaa aatcgcggaa accgcttcag acaagcctcc
     4741 gcaaggaaaa ttagtcacga ctgaaagcat tggctgggcg acaaaaaaag ttccgggatt
     4801 aatcctaaat ttacttaatg atacaaatta gagtgaattt ttagcccgga aagttgtctc
     4861 gtggcgtgag aggatgcgct taccggacgc ataataaacc ccatagcgtt accttcattt
     4921 gccgcatcaa caagttcagc atgctcttct tcagtcaaat catctgccaa ccaaccgatc
     4981 accacactgt aattgcccgt gcgtaaagcg cgaaccattg actccacagt gtggcaaggg
     5041 gagagctggc taatctgcat tactttcgtt aagggtagcc cagatgcctg aacccattcc
     5101 cgactcagtt tttgttgcgg tgttaaccag agttgccagc gcgattgctg accgagttgc
     5161 tgtaacaatg gcaacagtag aagttgcgtc atcatgggct gatcttcgcg atagacaact
     5221 tcactgataa gcccggctgt agtgttttcc gtagagacac gcgcaatttt acttgctgcg
     5281 gatgagaacg acgaagaacg atgtgcatag cctgaagtgt acataatcaa tccagcccct
     5341 gtaagctact gtatggatgt acagtacatc cagtgacaac aaagatcaac cctattttcg
     5401 gaaagagcct cgcaaatttt gtcgttggtg acgggaaaac ataaattaat cttgcccctt
     5461 aagaataagt tgcctatttt cgtagttaac ggatccgtta atgtgaatca ttcttttatg
     5521 ttatgatttt aaaaggaatt ttatgaaaag cctctcctat aagcggatct ataaatcaca
     5581 agaatacctg gcaacgttgg gcacaattga ataccgatca ttgtttggca gttacagcct
     5641 gaccgttgac gacacggtgt ttgcgatggt ttctgatggt gagttgtatc ttcgggcttg
     5701 tgagcaaagt gcacagtact gtgtaaaaca tccgcctgtc tggctgacat ataaaaagtg
     5761 tggccgatcc gttaccctca attactatcg ggttgatgaa agtctatggc g
//
LOCUS       DAJVUN010000217         5804 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.218, whole genome shotgun sequence.
ACCESSION   DAJVUN010000217 DAJVUN010000000
VERSION     DAJVUN010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5804
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.218"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1004
                     /locus_tag="OQQ76_003666"
     CDS             <1..1004
                     /locus_tag="OQQ76_003666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003557916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HCS1970002.1"
                     /translation="ILLPSVGAQLSNPDNITDNADRISDEWKAFDRAIESNHGVPEAA
                     ARLKEHLRDFRNTHAAAQLGVSAVAALPGDRLSAALMVKSHGTVSVDGKVSDADLTYL
                     EEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWSLGFLPKFQRVDL
                     FNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTDLDDNWTLGLVAQNLIPRSIETK
                     EVNGITETFRIRPQVTAGVSWHNAMFTTAFDVDLTPASGFTSDSNRQFAAIGAEFNAW
                     KWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTDNTYGAVAQFQFTF"
     gene            1365..5222
                     /gene="sigA"
                     /locus_tag="OQQ76_003667"
     CDS             1365..5222
                     /gene="sigA"
                     /locus_tag="OQQ76_003667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease autotransporter toxin SigA"
                     /protein_id="HCS1970003.1"
                     /translation="MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSI
                     YGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVP
                     DFSAVSNKGATTSIGGAYSVTATHNGTQHHAIKTQSWDQTAYKASNRVSSGDFSVHRL
                     NKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF
                     GQNYNPDLLSASLFNLDWKNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHG
                     VTSTVGFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVS
                     GGGELTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGD
                     NLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSES
                     GNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGN
                     VSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN
                     NNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNL
                     ENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSA
                     GESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIE
                     LAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILF
                     GVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS
                     LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGR
                     NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH
                     TTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARI
                     MSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSV
                     GAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHV
                     TEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDW
                     KVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLE
                     FEKSAFGKYNVDNAINANFRYSF"
BASE COUNT         1791 a         1288 c         1295 g         1430 t
ORIGIN      
        1 gcatcctgct tccgtccgtc ggcgcgcagc tctccaatcc ggataatatc accgacaacg
       61 ccgaccggat cagtgatgag tggaaggcct tcgaccgcgc catcgaaagt aaccacggtg
      121 ttcctgaggc tgccgcacgc ctgaaagaac acctccggga cttccgtaac acacatgccg
      181 ccgcacagct gggcgtttct gctgtggcgg cccttcccgg tgatcgcctc tctgccgcac
      241 tgatggttaa atcacacggc accgtcagtg tcgacggtaa agtctctgat gctgacctca
      301 cttacctgga agaggtggca aacagcaccg ggcaggaggt ggacaaaagc cgcctgacat
      361 cacaggcctt tgcccgcgcg gcactgatca ctgatgtggg tattgctctg gctacggaac
      421 tggaaacggc cgggcagaaa tggtctctgg gcttcctccc caaattccag cgcgtcgacc
      481 tgttcaacta caacgtgctg gtcagaaatt atgacagcag cgccttcaaa ggcgaccgct
      541 accacaacac gaaaaatggc atcaacgccg acatcggtgc cagtacggac ctggatgaca
      601 actggacgct gggactggtc gcacagaacc tgatcccccg tagtattgag acaaaagaag
      661 tgaacggtat cacggaaacc ttcaggatcc gcccgcaggt gacggccggt gtctcctggc
      721 acaacgcgat gttcaccacc gcatttgatg tggatctgac cccggccagc ggtttcacct
      781 ccgacagcaa ccgtcagttt gccgccattg gcgcagaatt taatgcctgg aaatgggcac
      841 agctgcgcgc cggttaccgt cagaatctgg ccggtaacga cggcagtgca ttcacggccg
      901 gggtggggat ctcaccgttt gatgtggttc accttgatgt tgcaggcctg atcggcacgg
      961 acaacactta cggtgcggtc gcacagttcc agttcacctt ctgagttcca cctgtaaaac
     1021 agcatgcaca ttatcgctgc atgttgtttc catcatcaaa agtctgtcgg acatcgacag
     1081 acttaactcc cccggataat acagaaaacc tgtaaaggat tgaccggaaa caacaaagat
     1141 caaattttga tcgcaaagtt caaaatacaa acaccaagtg gtcaatatct gaccaatcaa
     1201 tcacttgtgc ttatcttttt tttcattttg ttacatctgt catacaaata taactgacag
     1261 tggttatcat tataccctta tcagttacgt accatgactg atagttcccc gttgtaatta
     1321 aatgctatcc cataaccaca actcagaaat atcggagttc acgtatgaat aaaatttatt
     1381 cactgaaata tagtcatatt acaggtggat tagttgctgt ttctgaactg acccggaaag
     1441 ttagtgtcgg tacatcaaga aagaaagtta tcctcggtat tattttatcc tcaatatatg
     1501 gaagttatgg cgaaacagca tttgcagcaa tgctggatat aaataatata tggacccgcg
     1561 attatcttga ccttgctcaa aacagaggag agttcagacc gggtgcaaca aatgttcaat
     1621 taatgatgaa agatggaaag atatttcatt ttccagaact acctgtacct gatttttctg
     1681 ctgtttccaa caaaggtgca acaacatcaa ttggaggtgc gtacagtgtt actgcgactc
     1741 ataacggtac acagcatcat gcaataaaaa cacagtcatg ggatcagaca gcatataaag
     1801 caagtaacag agtatcatct ggcgactttt cggttcatcg tctgaataaa ttcgtcgtgg
     1861 aaacaacagg ggttacggag agtgccgact tctcactttc tcccgaagat gcgatgaaaa
     1921 gatatggcgt aaactacaac ggtaaggaac aaataattgg cttcagagca ggtgccggaa
     1981 caacctcaac gatattaaac ggcaaacaat atctgtttgg acaaaactat aatcccgact
     2041 tgttaagcgc aagtcttttt aatctggact ggaaaaacaa gagttacatt tataccaaca
     2101 gaaccccttt taaaaactca ccaatttttg gcgatagtgg ttctggttct tatctatatg
     2161 ataaagaaca acaaaaatgg gttttccatg gtgttaccag tacagttggt tttatcagta
     2221 gtaccaatat agcctggaca aactactcgt tatttaataa tattctggta aacaatttaa
     2281 aaaagaattt cacaaacact atgcagctgg atggtaaaaa acaagagtta tcatcgatta
     2341 taaaagataa ggacctgtct gtctcaggag gaggggaatt aacgctcaag caggataccg
     2401 atcttggcat tggcgggctt atattcgata agaaccagac atataaagtg tacggaaaag
     2461 ataagtctta taaaggtgcc gggatagata ttgataataa taccaccgtt gaatggaatg
     2521 ttaagggcgt tgccggagat aatctgcata aaataggtag tggtactctg gatgtaaaaa
     2581 tagcacaggg aaataacctt aaaataggta atgggactgt catccttagt gctgaaaaag
     2641 ccttcaataa aatttacatg gccggaggta aaggtacggt aaaaataaat gccaaagacg
     2701 ctttaagcga aagcggtaat ggcgaaatct attttaccag aaatggcgga acactggatc
     2761 taaacggcta tgaccagtca tttcagaaaa tcgcagcaac agatgcggga acaaccgtaa
     2821 cgaactcaaa cgtgaagcaa tcaacattat cacttactaa tactgatgca tatatgtacc
     2881 atgggaatgt atcaggtaat ataagcataa atcatattat caatactacc cagcaacata
     2941 acaataatgc caatctgatc tttgatggct cagtcgatat caaaaacgat atctctgtcc
     3001 ggaatgcaca gttaacatta caaggacatg cgacagaaca tgccatattt aaagaaggca
     3061 ataacaactg tccaattcct tttttatgtc aaaaagatta ttctgctgcc ataaaggacc
     3121 aggaaagcac tgtaaataaa cgttacaata cggaatataa gtccaacaat cagatagcct
     3181 ctttttccca gcccgactgg gaaagtcgta aatttaattt ccggaaatta aatttagaaa
     3241 acgcaaccct gagtataggc cgggatgcta atgtaaaagg acacatagag gctaaaaact
     3301 ctcaaattgt tctgggaaat aaaactgcat acattgacat gttctcagga agaaacatta
     3361 ctggcgaagg ttttggattc agacaacagc ttcgctccgg ggattcagca ggcgaaagta
     3421 gtttcaacgg cagtctgagt gctcaaaaca gcaaaataac tgttggtgat aaatcaactg
     3481 ttactatgac tggtgcatta tccttaatta atacagacct gattatcaac aaaggagcta
     3541 ctgttaccgc ccagggaaaa atgtatgtag ataaagctat tgaactggcc ggaaccctga
     3601 cattaacagg cacccctaca gaaaataata aatacagccc ggcaatctat atgtcagatg
     3661 gatataatat gacagaagat ggtgccacgt taaaggctca aaattatgcc tgggtcaatg
     3721 gtaatataaa atcagacaaa aaagcatcta ttctgtttgg tgttgaccag tataaagaag
     3781 ataacctgga caaaaccaca cacacaccgc tggctacagg tttgctgggt ggctttgata
     3841 cttcttatac cggaggtatt gatgctcctg ctgcctcagc cagcatgtat aacaccttat
     3901 ggagagtaaa cggacagtca gccctgcaat cattaaaaac ccgcgacagt cttttgttgt
     3961 ttagtaacat agagaattcg ggtttccata ctgtgactgt aaacacactg gatgccacta
     4021 atactgctgt gattatgcgg gctgatctga gccagtctgt aaatcaatcg gataaactca
     4081 ttgttaaaaa tcagttaacc ggacgcaata acagtctgtc ggtcgatata cagaaagtgg
     4141 gaaataataa ctcaggatta aacgttgacc tgataacagc cccaaaagga agcaataaag
     4201 agatatttaa agccagtact caggccatag gtttcagcaa catatctcct gtgatcagca
     4261 cgaaagagga tcaggaacat accacgtgga ccctgaccgg atataaggtg gctgaaaata
     4321 cagcatcttc cagtgcagca aaatcgtata tgtccggtaa ttacaaagcc ttcctgacag
     4381 aagtcaacaa cctgaataaa cgaatggggg atctgcgtga caccaatggc gaggccggtg
     4441 catgggcccg catcatgagc ggagcaggtt cagcttctgg tggatacagt gacaactaca
     4501 cccatgtgca gattggtgtg gataaaaaac atgagctgga tggacttgac cttttcactg
     4561 gtctgactat gacgtatacc gacagtcatg ccagcagtaa tgcattcagt ggcaagacga
     4621 agtccgtcgg ggcaggtctg tatgcttccg ctatatttga ctctggtgcc tatatcgacc
     4681 tgattagtaa gtatgttcac catgataatg agtactcggc gacctttgct gggctcggaa
     4741 caaaagacta cagttctcat tccttgtatg tgggtgctga agcaggctac cgctatcatg
     4801 taacagaaga ctcctggatt gagccgcagg cagaactggt ttatggggcc gtatcaggta
     4861 aacggttcga ctggcaggat cgcggaatga gcgtgaccat gaaggataag gactttaatc
     4921 cgctgattgg gcgtaccggt gttgatgtgg gtaaatcctt ctccggtaag gactggaaag
     4981 tcacagcccg cgccggcctt ggctaccagt ttgacctgtt tgccaacggt gaaaccgtac
     5041 tgcgtgatgc gtccggtgag aaacgtatca aaggtgaaaa agacggtcgt attctcatga
     5101 atgttggtct caacgccgaa attcgcgata atcttcgctt cggtcttgag tttgagaaat
     5161 cggcatttgg taaatacaac gtggataacg cgatcaacgc caacttccgt tactctttct
     5221 gataacagcc cgggccgcgt ttgcggccct tcttctaccg gagagaatat gtattaccct
     5281 gtgacagact atatcgctct tgctctcatt attagctttc tttttctgac attatttatc
     5341 tgcctgttat gccttaaaca tgagcgaata aaaaaaagaa actatcaggc aaaaaaatgc
     5401 acatattctg gagcatggct ggaatgcaac tgagttctca tggttccgat acggacagta
     5461 taacgaaacg ggtatttaca tctcgatcga gaagaccatt atcattacaa tcaccgtttc
     5521 tggtgggtgc tttaaaaaag aatacagcat tgtctcccac atgctggtca ctgacaccat
     5581 aacagaggcc accctgtacg aaaacgggct gtatacgcgc cacatcagac tcagtcgccc
     5641 agtatctgac agcaaatacc ccttgccacc cggatctcag ctcattaaaa atatgacctt
     5701 acgactgcgc ctgcaggatc agcaggaaga aacatccgtg acattatttc agggaaaaat
     5761 gagtaccgac ggaaataact attacatcat caaaggtaaa gtaa
//
LOCUS       DAJVUN010000218         5798 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.219, whole genome shotgun sequence.
ACCESSION   DAJVUN010000218 DAJVUN010000000
VERSION     DAJVUN010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5798
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.219"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..3522
                     /locus_tag="OQQ76_003668"
                     /pseudo
     CDS             1..3522
                     /locus_tag="OQQ76_003668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000536590.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
     gene            3523..5173
                     /locus_tag="OQQ76_003669"
                     /pseudo
     CDS             3523..5173
                     /locus_tag="OQQ76_003669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416730.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YfaQ family protein"
     gene            5178..>5798
                     /locus_tag="OQQ76_003670"
     CDS             5178..>5798
                     /locus_tag="OQQ76_003670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970004.1"
                     /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF
                     SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKIQQGRLVVNGASMPQRVESDGSF
                     ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV
                     VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVY"
BASE COUNT         1385 a         1472 c         1658 g         1283 t
ORIGIN      
        1 acattctggg taaggatgct gaaggcggcg tttttgtctc cgagaacttc ttctacgaaa
       61 gcgaaatcta caacacccgc ttgtatattt ttaccgatcg cccgctatat cgcgcaggcg
      121 atcgtgtcga tgttaaagtg atgggccgcg agttccacga tccgttgcat tcatccccca
      181 tcgtcagcgc cccggcgaag ctttcggtgc tggacgctaa cggcagtctg ttgcaaaccg
      241 tcgatgtcac gctggatgcg cgcaatggcg ggcagggaag tttccgcctg ccagaaaatg
      301 ccgttgccgg aggttatgag ttacgtcttg cttaccgcaa tcaggtctat agcagcagtt
      361 ttcgcgtggc aaactacatc aagccacatt tcgagattgg tttagctctc gacaaaaaag
      421 agttcaaaac tggcgaagcg gtcagcggca aactgcaact gctctacccg gatggcgagc
      481 cggtaaaaaa tgcccgcgtg cagttaagtt tgcgcgctca gcaattatca atggtcggta
      541 acgatttgcg ttatgccgga cgtttccccg tgtcgctgga aggcagcgaa acggtgtccg
      601 acgccagcgg tcatgtggcg ttaaatctcc ccgccgccga taaaccgagc cgttatttgt
      661 taaccgtctc cgccagtgac ggcgcggcgt atcgtgtcac caccaccaaa gagatcctca
      721 ttgaacgcgg tctggcgcat tactcattaa gtactgccgc acaatacagt aatagcggcg
      781 agtcggttgt gttccgttat gccgcgctgg aatcttcaaa acaggttcct gttacgtatg
      841 aatggttgcg tctcgaagac cgcacgagcc atagcggaga gctaccgtca ggcggcaaat
      901 cctttaccgt caatttcgct aaacctggca actacaatct gacattacgc gataaagacg
      961 gcttaattct cgctgggtta agttatgccg tcagcggtaa gggcagcacg gcgcatacgg
     1021 gtacggtaga tatcgtggcg gataaaacgc tgtaccagcc aggcgaaacc gcgaagatgc
     1081 tgattacctt tccggagcca attgatgaag cattattgac gctggaacgc gatcgcgtgg
     1141 aacagcagtc gctgctttcg catccggcaa actggctaac gctacaacgt ttaaacgata
     1201 cccagtatga agctcgggtt ccagtgagca attcctttgc gcctaacatc actttttcgg
     1261 tgctgtatac ccgtaatggt cagtacagtt ttcagaacgc cgggatcaaa gttgccgttc
     1321 ctcagcttga tatccgggtg aaaacggaca aaacccatta ccagcttggt gaactggtca
     1381 atgtcgaatt aacctcgtcg ctgaaaggta aacctgtttc tgcgcagcta acggtaggcg
     1441 tggtcgatga aatgatctac gcgctgcaac cagaaatcgc gccgaatatc ggcaaatttt
     1501 tctatccgct ggggcgtaac aatgtgcgta ccagctccag tctgtcgttt atcagctacg
     1561 accaggcgct ctccagcgag ccggttgcgc ctggcgcaac taaccgcagc gagcggcgag
     1621 taaaaatgct tgaacgtcca cggcgtgaag aggtggatac cgcggcatgg atgccgtcac
     1681 tcacaaccga taaacaaggc aaagcgtatt tcacgttcct gatgcctgat tcgttaaccc
     1741 gctggcgtat caccgcgcgt gggatgaacg gcgacgggct ggtcgggcag gggcgtgctt
     1801 atctgcgttc ggaaaaaaat ctctacatga agtggagtat gccaacggtg tatcgcgtgg
     1861 gcgacaaacc ggcggcagga ctgtttatct tcagtcagca ggataacgaa ccggtggcgc
     1921 tggtgactaa atttgcaggc gctgagatgc gccagacgct gacgctgcac aaaggggcga
     1981 attatatttc gctggcgcag aatattcagc aatctggctt gttaagtgca gaactgcaac
     2041 aaaatgggca agtgcaggac agcattagca caaaactgtc ttttgtggac aacagcaggc
     2101 ccgttgaaca gcagaaaaat gtcatgctcg gcggtggcga gaacgcgctg atgttgcccg
     2161 ctcagtctcg cctggcgttc gcttgccgat catcaaagtg ccgccgctaa cgacattcgt
     2221 cagatgattc aggataaccg tctgcggctg atgcaactgg cggggcccgg agcgcgcttt
     2281 acctggtggg gtgaagatgg caatggtgac gccttcctta cggcatggta cgccgactgg
     2341 caggccagct aggcgctcgg cgtaacgcaa caaccggaat actggcagca tatgctcgac
     2401 agttatgccg agcaggcgga taacatgccg ttattgcatc gggcgctggt gctggcgtgg
     2461 gcacaggaga tgaatctgcc gtgcaaaacg ttgttgaaag ggttggatga agctatcgcc
     2521 cggcgcggaa ctaaagatga agatttctct gaggaagaca tccgcgatat caatgacagc
     2581 ctgatcctcg atacaccgga atctccactg gcagatgcgg tggcaaacgt cttaaccatg
     2641 acgttgctga aaaaagcgca gttgaagtcc acggtgatgc cacaggttca gcaatatgcg
     2701 tgggataaag cggcaaacag caatcagccg ctggcgcaca cggttgtgct gctcaatagc
     2761 ggtggtgacg ctacccagac ggccgctatt ttaagtggtt tgaccgctga gcaatccact
     2821 attgagcgag cgctggccat gaactggctg gcgaaatata tggcgacaat gcctccagtt
     2881 gttttgcctg cgcctgcggg cgcatgggct aaacataagt taactggagg gggcgaatac
     2941 tggcgttggg ttggtcaggg cgtgccggac attctctctt ttggtgacga attatcgccg
     3001 caaaatgtgc aggtccgctg gcgtgagccg gcaaaaatgg ctcaacaaag taacattccg
     3061 gtgaccgttg aacgccagtt gtatcggctt atccctagtg aagaagagat gagctttatt
     3121 ctgcaaccgg tgaccagcaa tgagattgac agcgatgcgc tgtatctcga tgaaatcacg
     3181 cttaccagcg agcaggatgc agttctgcgc tacggtcagg tggaagtacc gctgccaccg
     3241 ggagccgacg ttgagcgcac aacatggggc atttcggtca ataaacccaa cgccgcgaaa
     3301 cagcaggggc aattgctgga aaaagcgcga aatgaaatgg gcgaactggc ctatatggtg
     3361 ccggtgaaag aactgacggg aacggtcact ttccgccatt tgctgcgctt ctcgcaaaaa
     3421 gggcaattcg ttctgcctcc tgctcgttat gtgcgttcct atgcacctgc acagcaaagt
     3481 gttgcggcag ggagtgaatg gaccgggatg caggtgaaat aagtgaactg gcgcagaatc
     3541 gtctggctat tggcgttggt tactcagcca acgcttgcgg aggagacgcc gttacaactg
     3601 gcactgcgtg gtgcgcagca cgatcaactg tatcagctgt cgtcatcagg cgtgaccaca
     3661 gtctcagcat tacctgactc gctcaccacg ccgttaggga gtttgtggaa actgtatgtt
     3721 tacgcctggc tggaggatac ccatcaaccg gagcagccct accagtgtcg cggaaactcc
     3781 ccggaagagg tttattgttg tcaggctggg gagagcataa cgcgcgatac cgcgctggta
     3841 cgttcctgtg ggctctattt tgcgccgcag cggttgcata ttggcgcaga tgtgtggggg
     3901 caatactggc aacagcgtca ggcgcctgcg tggttagcgt ctcttactac gctgaagcca
     3961 gaaacctcgg taacggttaa atcgctgctt gattcattag cgacgttacc tgcgcaaaac
     4021 aaagctcagg aagtcttact ggatgtggtg ctggacgagg cgaaaatcgg tgtcgcatcc
     4081 atgctcggta gtcgggtacg ggtgaaaacc tggagctggt ttgccgatga taaacaggaa
     4141 atccgtcagg gtggttttgc cggctggtta accgatggta caccgctgtg ggttactggc
     4201 agtggcacca gcaaaacggt actaacccgt tatgcgacgg tgcttaatcg ggttttgcca
     4261 gtgccgacgc aggttgccag tgggcaatgt gtagaggtgg agctgtttgc ccgctatccg
     4321 ctgaagaaaa tcacagcgga aaagagtacg acggcagtaa aacccggcgt acttaatggg
     4381 cgctatcgtg tgacgtttac taatggtaac cacattacgt ttgtcagcca cggtgagacg
     4441 accttactga gcgaaaaggg caaactgaaa ttgcagtcgc atctcgatcg tgaagagtac
     4501 gttgccagag ttctggatcg cgaggcgaaa agtacgcccc cctgaggcag cgaaagccat
     4561 gaccgtggcg attcgcactt ttttacagca aaacgccaat cgggaaggcg attgcctgac
     4621 catccccgac agcagcgcca cgcagcgtgt ttctgcttcg ccagcgacca cgggggcgcg
     4681 aacgatgacc gcctggacgc aggatctcat ctatgcaggc gatccggttc attatcatgg
     4741 cagtcgagct accgaaggga cactttcctg gcggcaagcc acggcccagg cggggcaggg
     4801 agagcgttac gaccagatac tcgcgtttgc ttatcccgac aacagcctta gccgctgggg
     4861 agcgccacgc tcaacctgcc agttattacc caaagcgaaa gcctggctgg cgaaaaaaat
     4921 gccgcagtgg cggcgtatat tacaaggcga gacggggtac aacgaaccag acgtgtttgc
     4981 ggtctgtcgt ttagtctcag gtttccccta taccgatcgg cagcagaaac ggctgtttat
     5041 tcgtaacttc tttacgcttc aggatcggct ggatttaacc catgagtatc tgcacctggc
     5101 ctttgatggt tatcccaccg ggcttgatga gaactatatc gaaacgctga cccgacaatt
     5161 attaatggac taatgctatg cgaaagattt ttcttccgtt gttactggtg gcactttcgc
     5221 ctgtcgctca cagtgaaggt gtgcaggaag tcgagattga cgcaccgctc tctggctggc
     5281 atccggcaga gggcgaagat gccagttttt cacaatcgat caattacccg gcgtcgtccg
     5341 tcaacatggc agatgatcaa aatatctcag cgcagatccg cggcaaaata aagaattatg
     5401 ctgcggcggg taaaattcag cagggccggc tggtggtcaa cggtgccagt atgccgcaga
     5461 gagttgaatc cgatggttca tttgcacgcc cttatatttt cactgaaggc agcaacagcg
     5521 tgcaggtcat cagcccggat gggcaaagcc gacaaaaaat gcagttttac tcaacgccgg
     5581 gtacaggaac gattcgtgca cgtttacggc tggttctctc gtgggatacg gacaataccg
     5641 atctcgatct ccatgttgtc acgcccgatg gcgaacacgc ctggtacggt aacaccgtgc
     5701 tgaaaaacag tggtgcactg gatatggatg tcacgacggg gtacggaccc gagattttcg
     5761 ccatgccagc gccagttcac ggacgctatc aggtgtat
//
LOCUS       DAJVUN010000219         5775 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.220, whole genome shotgun sequence.
ACCESSION   DAJVUN010000219 DAJVUN010000000
VERSION     DAJVUN010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5775
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.220"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..342
                     /locus_tag="OQQ76_003671"
     CDS             <1..342
                     /locus_tag="OQQ76_003671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005116031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
                     /protein_id="HCS1970005.1"
                     /translation="DPVELAEIINKKHHAVINGKKFKNSRAISCRSFNRYFSVSTDYR
                     PKLEALLACSQMLGINQVVAHNGNGGRECIGETGTVLGLNARDSKHAGRMFSMHNCQI
                     NPGAGPEITTP"
     gene            783..1850
                     /locus_tag="OQQ76_003672"
     CDS             783..1850
                     /locus_tag="OQQ76_003672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HCS1970006.1"
                     /translation="MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIE
                     ATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVA
                     AAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA
                     ESARAALESAKAQVSASKAAIEAAHTNIIQAQTRVEAAQATERRIAADIDDSELKAPR
                     DGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAP
                     DLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGV
                     AWVRVNEELPWPDDLVVRLPQ"
     gene            1847..4582
                     /gene="rbbA"
                     /locus_tag="OQQ76_003673"
     CDS             1847..4582
                     /gene="rbbA"
                     /locus_tag="OQQ76_003673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated ATPase/putative transporter
                     RbbA"
                     /protein_id="HCS1970007.1"
                     /translation="MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLI
                     GPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYH
                     TLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCC
                     ALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWL
                     VAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIA
                     IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW
                     LFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS
                     ERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM
                     VDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI
                     AYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSLRRLFSYSRREALELRRDPVRSTLALM
                     GTVILMLVMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYDEL
                     DRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL
                     QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSTLSVVR
                     EKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTL
                     TLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR
                     WIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQEG"
     gene            4582..5706
                     /locus_tag="OQQ76_003674"
     CDS             4582..5706
                     /locus_tag="OQQ76_003674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709253.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCS1970008.1"
                     /translation="MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTP
                     GSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIP
                     PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVS
                     LETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPF
                     EIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF
                     MGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAI
                     LYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA"
BASE COUNT         1291 a         1479 c         1676 g         1329 t
ORIGIN      
        1 gatccggtcg aattagcgga aattattaat aaaaagcacc atgctgtaat taatggcaaa
       61 aagtttaaaa atagccgggc tatctcttgt cgatccttta atcgttattt ttctgtttcg
      121 acagattaca gacctaaact tgaagcacta ttagcatgct cacaaatgtt aggtataaat
      181 caagttgttg cacataacgg taatggtgga agagaatgta taggtgaaac ggggacagtt
      241 ttaggtctta acgcccgtga cagtaaacat gctggaagaa tgttcagcat gcataattgc
      301 caaattaacc ctggtgcagg gcctgagata accactccct agaagtctta ccagcatgaa
      361 aaaaacagaa atggatttat gcctttgatt agaaggcgca caatgttaca gctctgaacc
      421 atagacaaca tgaatattaa tgttactatc tggttgagac tgttgataaa acgtaaaaag
      481 gaatgctctg ttcctgcaac tgaacaggcg tgaaacgcga tccaacagga tggataccgt
      541 tttgtcagcc agttttatag atcacactta tgagtatgcg tgtttcattt acggccagga
      601 atgctgatga tgacaacatt actacccgtt ttcactaagc cttccccgtt ggcgctcaat
      661 gctctgcgcg ctggtcgtat ttgtcgtttc cttcttatcc cggatggaag aatccgctga
      721 acgtcgttcg gcggcagttg taacacgcgt cgtttgctta cagggattat ggcgggccga
      781 ttatggataa gagtaagcgc catctggcgt ggtgggttgt cggggcactg gcggtggctg
      841 ccgtcgtggc gtggtggctg ttgcgcccgg cgggtgtgcc ggaaggcttt gctgtcagca
      901 atgggcgcat tgaagcgacg gaagtggata tcgccagcaa aattgccggg cgtatcgaca
      961 ccattctggt gaaagaaggc cagtttgttc gcgaaggtga agtgctggcg aagatggata
     1021 ctcgcgtgtt gcaggaacag cgactggaag ccatcgcgca aatcaaagag gcacaaagcg
     1081 ccgttgccgc cgcgcaggct ttgctggagc aacgacaaag cgaaactcgc gccgcgcagt
     1141 cgctggttaa tcaacgccag gcagaactgg actccgtagc aaaacgtcat atgcgttccc
     1201 gttcactggc ccaacgaggg gctatttctg cgcaacagct ggatgacgac cgcgccgccg
     1261 ctgagagcgc ccgagctgcg ctggaatcgg caaaagctca ggtttctgct tctaaagccg
     1321 ctatagaggc ggcacatacc aatatcattc aggcgcaaac ccgcgtcgaa gcggcacaag
     1381 ccactgaacg gcgcattgcc gcagatatcg atgacagcga actgaaagcc ccgcgtgacg
     1441 gacgcgtgca gtatcgggtt gccgagccag gggaagtgct ggcggcaggc ggtcgggtgc
     1501 tgaatatggt cgatctcagc gacgtctata tgactttctt cctgccaacc gaacaggcgg
     1561 gcacgctaaa actgggcggt gaagcacggc tgatcctcga tgccgcgcca gatctgcgta
     1621 ttccggcgac catcagtttt gtcgccagcg tcgcccagtt cacgccaaaa accgtcgaaa
     1681 ccagcgatga acggctgaaa ctgatgttcc gcgtcaaagc gcgtatccca ccggaattac
     1741 tccagcagca tctggaatat gtcaaaacgg gcttgccggg cgtagcatgg gtgcgggtga
     1801 atgaagaact tccgtggcct gacgacctgg tggtgaggtt gccgcaatga cgcatctgga
     1861 actggttccc gtcccgcctg tcgcgcaact ggcgggcgtg agccagcatt atggaaaaac
     1921 cgttgcgctg aacaatatca ctctcgatat tccggcccgc tgtatggtcg ggctgattgg
     1981 cccggacggc gtcgggaagt cgagtttgtt gtcgttgatt tccggtgctc gtgtcattga
     2041 gcagggcaat gtgatggtgc tgggcggcga tatgcgcgac ccgaagcatc gccgcgacgt
     2101 ctgcccgcgc atcgcctgga tgccgcaggg gctgggcaaa aacctctacc acaccttgtc
     2161 ggtgtatgaa aacgtcgatt ttttcgcccg cctgttcggt cacgacaaag cggagcggga
     2221 agtgcgaatt aatgagctgc tgaccagcac ggggttagca ccgtttcgcg atcgtccggc
     2281 agggaaactc tccggcggga tgaagcaaaa acttgggctg tgctgcgcgt taatccacga
     2341 cccggaactg ttgatccttg atgagccaac aacgggggtt gacccgctct cccgtgccca
     2401 gttctgggat ctgatcgaca gtattcgcca gcggcagagc aatatgagcg tgctggtcgc
     2461 caccgcctat atggaagagg ccgaacgctt cgactggctg gtagcgatga atgccggaga
     2521 agtgctggca accggcagcg ccgaagagct gcggcagcaa acgcaaagcg ccacgctgga
     2581 agaagcattt attaatctgt taccgcaagc gcaacgccag gcgcatcagg cggtagtgat
     2641 cccaccgtat caacctgaaa acgcagagat tgccatcgaa gcgcgcgatc tgaccatgcg
     2701 ttttggttcc ttcgttgccg ttgatcacgt caatttccgc attccacgcg gggagatttt
     2761 tggattcctt ggttcgaacg gctgcggtaa atccaccacc atgaaaatgc ttaccggact
     2821 gctgcccgcc agcgaaggtg aggcgtggct atttgggcaa ccggttgatc caaaagatat
     2881 cgatacccgc cgtcgtgtgg gctatatgtc gcaggcgttt tcgctctata acgaactcac
     2941 cgtgcggcaa aacctggagt tacatgcccg tttgtttcac atcccggaag cggaaattcc
     3001 cgcgcgagtg gctgaaatga gcgagcgttt taagctcaac gacgttgaag atgttctgcc
     3061 ggagtcattg ccgctcggca ttcgccagcg gctttcgctg gcggtggcgg tgattcatcg
     3121 cccggagatg ttaatcctcg atgagcctac ttctggtgtc gatccggtgg cgagggatat
     3181 gttctggcag ttgatggtcg atctctcgcg ccaggacaaa gtgactatct tcatctccac
     3241 ccactttatg aacgaagcgg aacgttgcga ccgcatctca ctgatgcacg ccggaaaagt
     3301 gcttgccagc ggtacaccgc aggaactggt tgagaaacgc ggagccgcca gtctggaaga
     3361 ggcatttatc gcctatttgc aggaagcggc agggcagagc aacgaagccg aagcgccacc
     3421 cgtggtacac gacaccaccc acgcgccgcg tcagggattt agcctgcgcc gtctgtttag
     3481 ctacagccgc cgcgaagcgc tggaactgcg acgcgatcca gtacgttcga cgctggcgct
     3541 gatgggaacg gtgatcctga tgctggtaat gggttacggc atcagtatgg atgtggaaaa
     3601 cctgcgcttt gcggtgctcg accgcgacca gaccgtcagt agccaggcgt ggacactcaa
     3661 cctctccggt tcccgttact ttatcgaaca gccgccgctc accagttatg acgagcttga
     3721 tcgtcggatg cgtgcgggcg atatcacggt ggcgattgag atcccgccca atttcgggcg
     3781 cgatatcgcg cgtggtacgc ctgtggaact cggcgtctgg atcgacggag cgatgcccag
     3841 tcgtgccgaa acggtaaaag gttacgtgca ggcaatgcac cagagttggc ttcaggatgt
     3901 ggcgagccga caatcgacac ccgccagcca aagcgggctg atgaacattg agacgcgtta
     3961 tcgctataac ccggacgtaa aaagcctgcc agcaattgtt ccggcggtga tcccgcttct
     4021 gctgatgatg atcccgtcaa tgctaagcac ccttagcgtg gtgcgggaaa aagagcttgg
     4081 gtcgattatc aacctttacg tgacccccac cacgcgtagt gaatttttgc ttggtaaaca
     4141 gttgccatac atcgcgctgg ggatgctgaa ctttttcctg ctctgcggcc tgtcggtgtt
     4201 tgtgtttggc gtaccgcata aaggcagttt cctgacgctc accctggcgg cgctgctgta
     4261 tatcatcatt gccaccggaa tggggctgct gatctccacc tttatgaaaa gccagattgc
     4321 cgccattttc ggaacggcga ttatcacgtt gatcccggcg acacagtttt ccgggatgat
     4381 cgatccggta gcttcgctgg aagggcctgg acgttggatc ggcgaggttt acccgaccag
     4441 tcattttctg actatcgccc gcgggacgtt ctcgaaagcg ctggatctga ctgatttgtg
     4501 gcaacttttt atcccgttgc tgatagccat cccgctggtg atgggcttaa gtatcctgct
     4561 gctgaaaaaa caggagggat gatgcgccat ttacgcaata tttttaatct gggtatcaaa
     4621 gagttgcgca gtctgctcgg tgataaagcg atgctgacgc tgattgtctt ctcgtttacg
     4681 gtgtcggtgt attcgtcagc gaccgttacg ccaggatcgt tgaacctcgc gccgatcgcc
     4741 attgccgata tggatcaatc gcagttatcg aaccggatcg ttaacagctt ctatcgtccg
     4801 tggtttttgc caccggagat gatcaccgcc gatgagatgg atgccggact ggacgccgga
     4861 cgctatacct tcgcgataaa tattccgcct aattttcagc gtgatgtcct cgccggacgc
     4921 cagccggata ttcaggtgaa cgtcgatgcc acgcgcatga gccaggcatt taccggcaat
     4981 gggtatatcc agaatattat caacggtgaa gtgaacagct ttgtcgcgcg ctaccgtgat
     5041 aacagcgaac cgttggtatc gctggaaacc cggatgcgct ttaacccgaa ccttgatccc
     5101 gcgtggtttg gcggggtgat ggcgatcatc aacaacatta ccatgctggc gattgtattg
     5161 accggatcgg cgctgatccg cgagcgtgaa cacggcacgg tggaacactt actggtgatg
     5221 ccgataacgc cgtttgagat catgatggcg aagatctggt cgatggggct ggtggtgctg
     5281 gtggtatcgg gattatcgct ggtgctgatg gtgaaaggtg tactgggcgt accgattgaa
     5341 ggctcgatcc cgctgtttat gctgggcgtg gcgctcagtc tgtttgccac cacgtcaatc
     5401 ggcattttta tggggacgat agcgcgttca atgccgcaac tggggctgct ggtgattctg
     5461 gtgctgctgc cgctgcaaat gctttccggt ggatccacgc cgcgcgaaag tatgccgcag
     5521 atggtgcagg acattatgct gaccatgccg acgacacact ttgttagcct cgcgcaggcc
     5581 attctctacc ggggtgccgg attcgaaatc gtctggccgc agttcctgac gctgatggca
     5641 attggcggcg cgtttttcac cattgcgctg ctgcgattca ggaagacgat tgggacaatg
     5701 gcgtaaggaa gggaaacttg acttcatact gtgatgtcat actattgatg tcataaagtg
     5761 aagtcataag gacat
//
LOCUS       DAJVUN010000220         5756 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.221, whole genome shotgun sequence.
ACCESSION   DAJVUN010000220 DAJVUN010000000
VERSION     DAJVUN010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5756
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.221"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(7..2109)
                     /locus_tag="OQQ76_003675"
     CDS             complement(7..2109)
                     /locus_tag="OQQ76_003675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCS1970009.1"
                     /translation="MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTP
                     AAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIR
                     GIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
                     QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQK
                     NLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTI
                     KQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQ
                     GIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERN
                     LMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPA
                     GSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNFGLKPSTNDTIEIGSKTR
                     IGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNA
                     SWAWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMA
                     DDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYE
                     PSPGRNYGVGMNIAWRFE"
     gene            2351..3412
                     /locus_tag="OQQ76_003676"
     CDS             2351..3412
                     /locus_tag="OQQ76_003676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HCS1970010.1"
                     /translation="MHLRHLFSSRLRGSLLLGSLLVASSFSTQAAEEMLRKAVGKGAY
                     EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT
                     LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI
                     GKESVIWVVDGENIKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELITIDTADNKI
                     LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA
                     VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ
                     KSTKQQEATQPDDVIRIAL"
     gene            complement(3525..5024)
                     /gene="ansP"
                     /locus_tag="OQQ76_003677"
     CDS             complement(3525..5024)
                     /gene="ansP"
                     /locus_tag="OQQ76_003677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparagine permease"
                     /protein_id="HCS1970011.1"
                     /translation="MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI
                     GTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL
                     GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM
                     IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG
                     LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV
                     MLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA
                     MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS
                     WAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT
                     IAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS"
     gene            5291..>5756
                     /locus_tag="OQQ76_003678"
     CDS             5291..>5756
                     /locus_tag="OQQ76_003678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HCS1970012.1"
                     /translation="MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGTSRELL
                     KTLNPLCQIPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQQFQRLLVWLVA
                     NVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQL"
BASE COUNT         1519 a         1488 c         1380 g         1369 t
ORIGIN      
        1 aggtaattac tcaaatctcc acgcaatatt catgccgaca ccataatttc gtccgggcga
       61 aggttcgtaa tatcgcccgt ttgactcatt gacaatgaca gaaccaacgt attctttatc
      121 gaataaatta tcgacacgac caaataaatc cacagttaaa ttgtggtaat tgtatttata
      181 cccggtgaat aagccgacga gagtataaga cggcgctttt gccgtatttt catcatctgc
      241 cataatatcg cccatataac gcgcttccgt gcctgcatac caaccatctt ccggtacata
      301 acctatcgac gcaaagccca tattacgggc gatccctggc atccgattac cgttacaatc
      361 ctgttcattg caaacattgc tgcgataggt cgcatcaagc caggcccagg acgcgtttac
      421 gcgaaaatct cctgcgaaac gttgatccca tgccagttca gcgccttgac gacgggtctt
      481 tccggcattt ttgtaagtcg tacgcccacc gctactgcta tcgacaacaa tttcatcatc
      541 agtgtcggtc tgaaacaatg cgagactaag cagcccatca ccaatacgcg ttttactgcc
      601 gatctcaatt gtatcgttgg tggatggttt taaaccaaag ttcataccgc tttgcccatc
      661 agcacgataa gacagctcat taatcgtcgg cgtttcaaaa cctcgcccgg ctgccagata
      721 gatattccag gcatcggtca ttgcatattt taacgaaccg gcaggtagcc atttatgata
      781 actggcatca ccgctgtcat cgccgttacc cggagtaacg taatggtcgt tggaatcaaa
      841 ccacacggag ctgtagcgca cgccagcatc cagcgacagt ttttcgctca gctgccactg
      901 cgtctgtaaa tagggatcga tgttccacat cagattgcgt tcgtcgcgac gcaactcacc
      961 tttttgcccg tactccggca tgccgctatt caggcggaag ttattgtagc ccttgcggtt
     1021 ttcactcatg ttttcgtagt tcaggccggt agtgaacgtg accggaacgc ccagttcacc
     1081 acggtgtgtc cagcggctgt ctatcccctg gtaatggcgt tgcagggtaa tcacgccgcc
     1141 cgcatgtgac gggttaagtt gtggtgccat gggtattgac tggtactggg tcgtttctcg
     1201 ctctccggca tacatcatca cactcatatc atcttgcgcg ctcaggctac gctcatagcg
     1261 caacccagcc tgagtttgct tgatggtttt tcgcgtgtcg tactgttctg cacgaggcgc
     1321 ttgttgtgga ttagccttcc attctgcttt ggttagccca cctgggtcat ctgctttgat
     1381 atccacacta ttgaaaatca gacttaattt gctggcttca tcaatgcgta cgcccagttt
     1441 ggcattggct aaatttttct gtgcgccact atggtcacga tagccgtggg tcgtaaaacg
     1501 cgtggttgag acggtgtaat cgacatcgcc aggctgtgtg ccgtctcccg ttgcgcccgt
     1561 tgctttcagc ccatagcgcc agctgccaaa actgccgtag taactactgg cttcaatggt
     1621 tggtggctgt tgtccggtct gggtggtgac attcattacc ccaccagacg cgttgccata
     1681 cagggcagag aaggggccac gcagcacttc cacattttgc acactgctta aatcgatgtt
     1741 ggatgtttgc ccttgcccgt cgggcatggt ggcgggaata ccgtccacat acaggcgaat
     1801 accgcgaata ccgtaagtgg agcgggagcc aaatccgcga atcgacagct gtaaatcttg
     1861 cgcatagttc tgccggtttt gtacctgcaa accaggcacg ccggtcagtg attcggacaa
     1921 gttaatgcgc ggtgttgcca ggcgcatctc ctcgccatcc accacgctta ctgctgctgg
     1981 ggtatccagt tctgaaacca cctgcggtgc ggcactgaca atcatagtct gttcatcagc
     2041 ggcaaaaaca acgggggaaa ggacaagcag tgcgggcaaa acggtctgtc ggacggaaaa
     2101 aatcttcatg aaaaaagcca ggttaagaat gggaaaacgc tgtcatggta ataaaattgt
     2161 aaacttatgg aaaacgaaac ggcacgatac gttaattaat tgagaaaatt gtagtcgtaa
     2221 cggcaagaaa tgctccacat ttgagaaaat aatgattacc attcccattt ataacaagag
     2281 cgtgacgatg attacgctta gcgaagcatt gtgaagcagc aaaaatattg gttcatcaaa
     2341 gggagtcgtc atgcatttac gtcatctgtt ttcatcgcgc ctgcgtggtt cattactgtt
     2401 aggttcattg cttgttgctt catcattcag tacgcaggcc gcagaagaaa tgctgcgtaa
     2461 agcggtaggt aaaggtgcct acgaaatggc ttatagccag caagaaaacg cgctgtggct
     2521 cgccacttcg caaagccgca aactggataa aggtggcgtg gtttatcgtc ttgatccggt
     2581 cactctggaa gtgacgcagg cgatccataa cgatctcaag ccgtttggtg ccaccatcaa
     2641 taacacgact cagacgttgt ggtttggtaa caccgtaaac agcgcagtca cggcgataga
     2701 tgccaaaacg ggcgaagtga aaggccgtct ggtgctggat gatcgtaagc gcacggaaga
     2761 ggtgcgcccg ctgcaaccgc gtgagctggt agctgatgat gccacgaaca ccgtttacat
     2821 cagtggtatt ggtaaagaga gcgtgatttg ggtcgttgat ggcgagaata tcaaactgaa
     2881 aaccgccatc cagaacaccg gtaaaatgag taccggtctg gcgcttgata gcaaaggcaa
     2941 acgtctttac accactaacg ctgacggcga attgattacc atcgacaccg ccgacaataa
     3001 aatcctcagc cgtaaaaagc tgctggatga cggcaaagag cacttcttta tcaacatcag
     3061 ccttgatacc gccaggcagc gtgcatttat caccgattct aaagcggcag aagtgttagt
     3121 ggtcgatacc cgtaatggca atattctggc gaaggttgcg gcaccggaat cactggctgt
     3181 gctgtttaac cccgcgcgta atgaagccta cgtaacgcat cgtcaggcag gtaaagtcag
     3241 tgtgattgac gcgaaaagct ataaagtggt gaaaacgttc gatacgccga ctcatccaaa
     3301 cagcctggcg ctgtctgccg atggcaaaac gctgtatgtc agtgtgaaac aaaaatccac
     3361 taaacagcag gaagctaccc agccagacga tgtgattcgt attgcgctgt aatagatatg
     3421 gcgagggtga aaacggtgag acttgcctgc cttttatcac ggcgtatccg gcactttcgt
     3481 cagtaatctg aatttgcccg gcacgtagcc gggcaatttt gcaattaact cgccgtttca
     3541 ggcttaaaca caatttcctg tttttcttca tcttcctcga cgactggcgc agtgctgtga
     3601 atttcagcaa cgcgtttgcg cacaccaaac cagcctataa ccagcagaat accgataatc
     3661 ggcagcgccg cgatagtata agtcccgttc gggtaatcga acgccatcag cacaaggaca
     3721 ctcagtaaaa acagtaatgt cagccaggaa gtgaagggcg cgccaggcag tttaaaactg
     3781 acatccgctg ctttgccttc tttaatcgct ttacgcaggc gcatctggca cacgatgata
     3841 aacgcccatg aagcgatgat tcccagcgac gcgaagttca acacaatctc aaatacgcgc
     3901 gacggcacca gatagttgag gaatacgccg acgacataca caaccagtgt cgctagaatc
     3961 ccggcatacg gcacatgctg acgactcatt ttcgccataa aactcggtgc ggaaccgccc
     4021 atcgccattg agcgcagaat acgtccggtg cagtacagac ctgagttcag gctggagagg
     4081 gcagcggtca gcaccacaat gttcataatg ctgccgatat atggcacacc cagtttagag
     4141 aaaaacgtca cgaacggact ttgccccgcc tgatacgcgc tccacggcaa taacataacc
     4201 agcaacacca cggagccgac gtaaaacagg ccaatacgcc aaatcacact gttaatggct
     4261 ttaggcacca tggtctgcgg atctttacat tctccggcag ctgtacccac catttcaatg
     4321 gaggcaaaag caaacactac gccctgaatc aacaccagcg caggcagcaa accgtggggg
     4381 aagaagccgc cattatcggt gattaaatga aagccagtgg tgttgccatc cagcggctga
     4441 ccactaccga ggaacactgt acccacgacc aaaaaggtca caatggcgag cactttaata
     4501 agcgcaaacc agaactccat ctccgcaaac catttcacac cgatcatatt catggtgcca
     4561 acgatggtaa gtgcagcgag cgcaaagacc cactgcggca cgccgccaaa cgcaccccag
     4621 taatgcatat acagagcgac ggcggtaata tcaacaatcc ccgtcatcgc ccagttgatg
     4681 aagtacatcc agccagcaac ataagcggct ttctcaccca aaaactcacg ggcataagag
     4741 acaaaactgc cactggaagg gcggtgtagc accagctcac ccaatgcacg cagaataaaa
     4801 aacgaaaaca agccacaaat taaataaacc agtgccagtg ctggacccgc catttgcagt
     4861 cgggctcctg cacctaaaaa caagccggtg ccaatcgcgc cgccaatggc gatcatctgt
     4921 acctggcgat tgcccatcgc tttgtgatac ccctcttcgt gggcattaag ccagcggcgt
     4981 ttcgcggcgt gttgatctga agtgtcggtg tcgtgtttac tcattgctct ccctgattgc
     5041 tttaatgaaa aagtcatata agttgccatg aacaatgttt atttatcctg gcgatgatag
     5101 ttatcaccat tattctttat gggtataaaa ctatcggcgc agcatcctac ccgttatcga
     5161 tatacgatgc aaaacatccc cttacaatcc tgaaggggat tcatacaact gacgaaaaaa
     5221 tgacaaatac ttttgctggt taacctgtgt actgtcctac acttaatcct taaaagattg
     5281 tgaggggcat atgattaagg tgtatggcgt acccggatgg ggctctacaa tcagtgagct
     5341 gatgctaaca ctggctgata ttccttatca gttcgttgat gtcagtggtt ttgaccacga
     5401 gggaacttca cgcgagttat tgaaaaccct gaacccgttg tgtcagattc cgacactggc
     5461 gctggaaaat gacgagatta tgacggagac agcggcgatt gcattgatgg ttctcgatcg
     5521 tcgcccggac cttgcgccac cggttgggcg cgccgaacgt cagcagtttc aacggctatt
     5581 ggtctggctg gttgctaatg tctatccaac attcactttc gccgattacc ctgagcgttg
     5641 ggctcctgac gcacctgaac agttaaagaa gaatgttatt gaatatcgta aatcgcttta
     5701 tatctggctg aattcacaat tgaccgctga accttatgcg tttggtgagc aactaa
//
LOCUS       DAJVUN010000221         5744 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.222, whole genome shotgun sequence.
ACCESSION   DAJVUN010000221 DAJVUN010000000
VERSION     DAJVUN010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5744
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.222"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ76_003679"
     CDS             complement(35..772)
                     /gene="bamD"
                     /locus_tag="OQQ76_003679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HCS1970013.1"
                     /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ
                     DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH
                     PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
                     TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM
                     ENAYRQMQMNAQAEKVAKIIAANSSNT"
     gene            907..1887
                     /gene="rluD"
                     /locus_tag="OQQ76_003680"
     CDS             907..1887
                     /gene="rluD"
                     /locus_tag="OQQ76_003680"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017383977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HCS1970014.1"
                     /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR
                     VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDL
                     VVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE
                     SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF
                     RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR
                     QALHATMLRLYHPISGIEMEWHAPIPEDMVELIEVMRADFEEHKDEVDWL"
     gene            1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ76_003681"
     CDS             1884..2615
                     /gene="pgeF"
                     /locus_tag="OQQ76_003681"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HCS1970015.1"
                     /translation="MSKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP
                     EHVEENRKQLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV
                     MTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPR
                     AFEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY
                     TENETFFSYRRDKTTGRMASFIWLI"
     gene            2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ76_003682"
     CDS             2745..5318
                     /gene="clpB"
                     /locus_tag="OQQ76_003682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HCS1970016.1"
                     /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG
                     SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG
                     DNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA
                     LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF
                     IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ
                     KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID
                     LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD
                     KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE
                     LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL
                     HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD
                     SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL
                     VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERSYEIYISDE
                     ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV
                     Q"
BASE COUNT         1446 a         1364 c         1544 g         1390 t
ORIGIN      
        1 ctcaagggct gccgttttgt gtttcaggtt tctgttatgt attgctgctg tttgcggcga
       61 tgattttcgc tactttttca gcttgcgcat tcatctgcat ctgacggtat gcattttcca
      121 tcagtggcag cgcatcacgc gtagcctggg tatccgggta gtcgcgcaac atgccttcta
      181 cgcggttaac gacggcaacc catgcaccac gttctgtata gtactcggca acggagtatt
      241 catatttcgc cagacgatct ttcaggaata ccagacgttt ggttgcatcg gtagtgtact
      301 gactgttcgg atagccgcgc accagtttgg aaaagtcact aaacgcagct cgtgcatgtt
      361 gaggatcgcg atcgctacgg tcaacgccaa agaacccttg cagcgcactg tcatccagcg
      421 ccatattggt caggccacgc atgtacatga cataatcgat attcggatgg gtcgggttaa
      481 ggcgaataaa acgatcgatg gcagcctgtg ctaacggcaa atcggcgttt ttatagtagg
      541 cgtagatgag atccagctgc acctgctgcg aatacggacc aaacggatag cgattatcta
      601 atgcttccag ttgcgttatt gcctgtctcc agttaccgtc ctgcagcttt tgttgtgcag
      661 tcgcgtaaat ttcatttggt ggattatcag gtacttcttc ctttgacccc gagcaacccg
      721 ccaaaaacag gcttagtgtg gcggctgcca ccagatattt catgcgcgtc atgacgtttt
      781 gactttcctc aaaatgtaat acgggagatt ctctgttcct gctcccggtt aagaccagct
      841 acaatagcac actatattaa acggcaaagc cgtaaaaccc caacgataaa cgaagaagca
      901 gtatatatgg cacaacgagt acagctcact gcaacggtgt ccgaaaacca actcggtcaa
      961 cgcttagatc aggctttggc cgaaatgttc ccggattatt cacgttcgcg aataaaagaa
     1021 tggatcctcg accagcgcgt gctggtaaac ggcaaagttt gtgataagcc gaaagaaaaa
     1081 gtattgggtg gcgagcaggt tgccatcaac gctgagattg aagaagaagc gcgttttgaa
     1141 ccgcaggata tcccgctgga tattgtctat gaagatgaag atatcatcgt cattaataaa
     1201 ccgcgcgacc tggtggtaca tcctggcgcg ggtaacctgg atggcacggt actgaatgcg
     1261 ttgcttcatt attatccgcc cattgccgat gtaccgcgtg cgggcatcgt ccatcgtctg
     1321 gataaagaca ccactggcct gatggttgtg gcaaaaaccg ttccggctca gacgcgttta
     1381 gtcgaatctt tgcaaaggcg tgaaattact cgtgagtatg aagcggtggc aattggtcat
     1441 atgaccgctg gcggtacagt agatgaacca atcagccgcc acccgaccaa acgtactcac
     1501 atggcggtgc atcccatggg caaaccggcg gtcactcact atcgcatcat ggaacacttc
     1561 cgtgtgcaca cgcgtctgcg gttgcgtctg gaaaccggac gtacgcacca gatccgcgtg
     1621 catatggcgc atattaccca tccgctggtg ggcgatccgg tttatggtgg ccgtccgcgt
     1681 ccgccaaaag gtgcttcgga agcgtttatc tccacgctgc gtaagtttga ccgccaggcg
     1741 cttcatgcaa ctatgctgcg tctttatcac ccgatctccg gcatcgaaat ggaatggcat
     1801 gcgcctattc cagaagatat ggtggagttg attgaggtta tgcgcgccga tttcgaagag
     1861 cataaggatg aagtggactg gttatgagta agctgattgt cccgcagtgg ccgctgccaa
     1921 aaggtgttgc ggcctgtagc tctacccgta tcggcggcgt gagcttgcca ccttacgact
     1981 ctctcaacct tggcgctcat tgtggtgata acccggagca cgtagaggag aatcgcaagc
     2041 aactttttgc tgcgggaaat ttgccttcaa aaccggtctg gcttgagcag gtacacggca
     2101 aagatgtgct taagctcact ggcgaacctt atgcctcaaa acgggcggat gcctcttata
     2161 gcaatacgcc cggcacggtt tgcgcagtga tgactgccga ctgcctccct gtgctgtttt
     2221 gcaatcgagc gggaacggaa gtcgccgccg ttcatgctgg ctggcgtgga ctgtgcgcag
     2281 gcgtgctgga agagacggtt tcctgttttg ctgataaacc tgaaaacatt ctcgcctggt
     2341 tagggccggc aattggtcca cgcgcgttcg aagtgggggc ggaggttcgc gaggcgttta
     2401 tggcagtaga cgctaaagca agtgcagctt tcattcagca tggtgataag tatctggcgg
     2461 atatttatca gcttgcccgg cagcgtctgg cgaacgtggg tgttgagcaa attttcggcg
     2521 gcgaccgttg tacatatacg gaaaatgaga ctttcttctc ttatcgtcgc gacaagacca
     2581 ccggtcgtat ggcaagtttc atttggctga tataacctaa agaatcaaga cgattcggta
     2641 cgcgtgattt tcttttcaca ttaatctggt caataacctt gaataattga gggatgacct
     2701 catttaatct ccagtagcaa ctttgatccg ttatgggagg agttatgcgt ctcgatcgtc
     2761 ttactaataa attccagctt gctcttgccg atgcccaatc acttgcactc gggcacgaca
     2821 accaattcat cgaaccactt catttaatga gcgccctgct gaatcaggaa gggggttcgg
     2881 ttagtccttt attaacatcc gctggcataa atgctggcca gttgcgcaca gatatcaatc
     2941 aggcattaaa tcgtttaccg caggttgaag gtactggtgg tgatgtccag ccatcacagg
     3001 atctggtgcg cgttcttaat ctttgcgaca agctggcgca aaaacgaggt gataacttta
     3061 tctcgtcaga actgttcgtt ctggcggcac ttgagtctcg cggcacgctg gccgacatcc
     3121 tgaaagcagc aggggcgacc accgccaaca ttactcaagc gattgaacaa atgcgtggag
     3181 gtgaaagcgt gaacgatcaa ggtgctgaag accaacgtca ggctttgaaa aaatatacca
     3241 tcgaccttac cgaacgagcc gaacagggca aactcgatcc ggtgattggt cgtgatgaag
     3301 aaattcgccg taccattcag gtgctgcaac gtcgtactaa aaataacccg gtactgattg
     3361 gtgaacccgg cgtcggtaaa actgccatcg ttgaaggtct ggcgcagcgt attatcaacg
     3421 gcgaagtgcc ggaaggattg aaaggccgcc gcgtactggc gctggatatg ggcgcgctgg
     3481 tggctggggc gaaatatcgc ggtgagtttg aagaacgttt aaaaggcgtg cttaacgatc
     3541 ttgccaaaca ggaaggcaac gtcatcctgt ttatcgacga attacatacc atggtcggcg
     3601 cgggtaaagc cgatggcgca atggacgccg gaaacatgct gaaaccggcg ctggcgcgtg
     3661 gtgaattgca ctgcgtaggt gccacgacgc ttgacgaata tcgccagtac atcgaaaaag
     3721 atgctgcgct ggaacgtcgt ttccagaaag tgtttgttgc cgagccttct gttgaagata
     3781 ccattgcgat tctgcgtggc ctgaaagaac gttacgaatt gcaccaccat gtgcaaatta
     3841 ctgacccggc aattgttgca gcagcgacgt tgtctcatcg ctacattgct gaccgtcagc
     3901 tgccggataa agccatcgac ctgatcgatg aagcagcatc cagcattcgt atgcagattg
     3961 actcaaaacc agaagaactc gaccgactcg atcgtcgtat catccagctc aaactggaac
     4021 aacaggcgtt aatgaaagag tctgatgaag ccagtaaaaa acgcctggat atgctcaacg
     4081 aagaactgag cgacaaagaa cgtcagtact ccgagttaga agaagagtgg aaagcagaga
     4141 aggcatcgct ttctggtacg cagaccatta aagcggaact ggaacaggcg aaaatcgcta
     4201 ttgaacaggc tcgccgtgtg ggggacctgg cgcggatgtc tgaactgcaa tacggcaaaa
     4261 tcccggaact ggaaaagcaa ctggaagccg caacgcagct cgaaggcaaa actatgcgtc
     4321 tgttgcgtaa taaagtgacc gacgccgaaa ttgctgaagt gctggcgcgt tggacgggga
     4381 ttccggtttc tcgcatgatg gaaagcgagc gcgaaaaact gctgcgtatg gagcaagaac
     4441 tgcaccatcg cgtcattggt cagaacgaag cggttgatgc ggtatctaac gctattcgcc
     4501 gtagccgtgc ggggttggcg gatccaaatc gcccgattgg ttcattcctg ttcctcggcc
     4561 caacgggtgt ggggaaaact gagctttgta aggcgctggc gaactttatg tttgatagcg
     4621 acgaggcgat ggtccgtatc gatatgtccg agtttatgga gaaacactcg gtgtctcgtc
     4681 tggttggtgc gcctccggga tatgtcggtt atgaagaagg tggctacctg accgaagctg
     4741 tgcgtcgtcg tccgtattcc gtcatcctgc tggatgaagt ggaaaaagcg catccggatg
     4801 tcttcaacat tctgttgcag gtactggatg atggtcgtct gactgacggg caggggagaa
     4861 cggtcgactt ccgtaatacg gttgtcatta tgacctctaa cctcggttcc gatttgattc
     4921 aggaacgctt cggtgaactg gattatgcgc acatgaaaga gctggtgctc ggtgtggtaa
     4981 gccataactt ccgtccggaa ttcattaacc gtattgatga agtggtggtc ttccatccgc
     5041 tgggtgaaca gcacattgcc tcgattgcgc agattcagtt gaaacgtctg tacaaacgtc
     5101 tggaagaacg tagttatgaa atctacattt ctgacgaggc gctgaaactg ctgagcgaga
     5161 acggttacga tccagtctat ggtgcacgtc ctttgaaacg tgctatccag cagcagatcg
     5221 aaaacccgct ggcacagcaa atactgtctg gtgaattggt tccgggtaaa gtgattcgcc
     5281 tggaagttaa tgaagaccgg attgtcgctg tccagtaatg ataaaacgag cccttcgggg
     5341 ctcgtttttg tctataagtt agacggaaaa gactatattt aagatgtttt gcctgaaaaa
     5401 tgagcgaacg ataaagtttt tatatttttc gcttgtcagg ccggaataac tccctataat
     5461 gcgccaccac tgacacggaa caacggcaaa cacgccgccg ggtcagcggg gttctcctga
     5521 gaatctcaac agagaaaagc aaaaaaatgc ttgactctgt agcgggaaag cgtattatgt
     5581 acaccccagc gctgctgaga aaaaacgaag cggcactgct ctttaacaat ttatcagaca
     5641 atctgtgtgg gcactcgaag atacggattc ttaacgtcgc aagacgaaaa atgaatacca
     5701 agtctcaaga gtgaacacgt aattcattac gaagtttaat tctt
//
LOCUS       DAJVUN010000222         5566 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.223, whole genome shotgun sequence.
ACCESSION   DAJVUN010000222 DAJVUN010000000
VERSION     DAJVUN010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5566
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.223"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            309..644
                     /locus_tag="OQQ76_003683"
     CDS             309..644
                     /locus_tag="OQQ76_003683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phnA family protein"
                     /protein_id="HCS1970017.1"
                     /translation="MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIV
                     KDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK
                     LKSEFVKKN"
     gene            804..1247
                     /gene="yjdN"
                     /locus_tag="OQQ76_003684"
     CDS             804..1247
                     /gene="yjdN"
                     /locus_tag="OQQ76_003684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family metalloprotein YjdN"
                     /protein_id="HCS1970018.1"
                     /translation="MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDS
                     AENCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKASYSGFTLVLDSQQVEEGKRW
                     FDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQQPTQ"
     gene            1380..2167
                     /gene="phnC"
                     /locus_tag="OQQ76_003685"
                     /pseudo
     CDS             1380..2167
                     /gene="phnC"
                     /locus_tag="OQQ76_003685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709835.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
     gene            2192..3208
                     /gene="phnD"
                     /locus_tag="OQQ76_003686"
     CDS             2192..3208
                     /gene="phnD"
                     /locus_tag="OQQ76_003686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter substrate-binding
                     protein"
                     /protein_id="HCS1970019.1"
                     /translation="MNAKIIASLAFTSMFSLSTLLSPAHAEEQEKALNFGIISTESQQ
                     NLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRA
                     NGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVP
                     GYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKE
                     LKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRASS
                     DLQLVPIRQLALFKEMQGVKSNKGLNEQDKLAKTTEIQAQLDDLDRLNNALSAMSSVS
                     KAVQ"
     gene            3328..4107
                     /gene="phnE"
                     /locus_tag="OQQ76_003687"
     CDS             3328..4107
                     /gene="phnE"
                     /locus_tag="OQQ76_003687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HCS1970020.1"
                     /translation="MQTITIAPPKRSWFSLLSCAVVLAVLVVSWQGAEMAPLTLIKDG
                     GNMATFVADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWW
                     VYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLALFIHTTGVLSKLLSEAVEAI
                     EPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIG
                     VTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKHFI"
     gene            4128..4853
                     /gene="phnF"
                     /locus_tag="OQQ76_003688"
     CDS             4128..4853
                     /gene="phnF"
                     /locus_tag="OQQ76_003688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism transcriptional regulator
                     PhnF"
                     /protein_id="HCS1970021.1"
                     /translation="MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAAR
                     FEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPT
                     SEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGIALCLIDHYFADLTLWPTLQ
                     RFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDG
                     ESSPAEYSVSLTRADMIEFTMEH"
     gene            4854..5306
                     /gene="phnG"
                     /locus_tag="OQQ76_003689"
     CDS             4854..5306
                     /gene="phnG"
                     /locus_tag="OQQ76_003689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnG"
                     /protein_id="HCS1970022.1"
                     /translation="MHADIATRQHWMSVLAHSQPAELAARLNALNITANYEVIRTAET
                     GLVQIQARMGGTGERFFAGDATLTRAAVRLTDGTLGYSWVLGRDKQHAERCALIDALM
                     QQSRHFQNLSETLIAPLDADRMARIAARQAEVNASRVDFFTMVRGDNA"
     gene            5303..>5566
                     /locus_tag="OQQ76_003690"
     CDS             5303..>5566
                     /locus_tag="OQQ76_003690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnH"
                     /protein_id="HCS1970023.1"
                     /translation="MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPL
                     NIATTSVLLTLADNDTPVWLSAPLSNDIVSQSLRFHTNAPLVNQ"
BASE COUNT         1312 a         1641 c         1453 g         1160 t
ORIGIN      
        1 aattttatat ttagtgtgtt gttttttatc agaataaata acgtcttctg atgcgtttaa
       61 aacgtcagaa agataaaaat atcatgtgaa taaaaaaaag aacaagtaaa gcattaacat
      121 tatcttaaat aataaataga ggcaaaaaga ttattttctt tttgcgtttc ctttcaaatg
      181 aaaacgatcg tcgtctaaaa tcagcagtac ccccgacaaa ctcagggatt ttgtgtataa
      241 ttgcggcctt tttcggcaat ctgccgtttt ttggcgcttt tgccctgctg acttttgagg
      301 aaatccacat gtcattacca cactgcccaa aatgcaactc cgaatacact tacgaagata
      361 acggcatgta catctgcccg gaatgtgcct acgaatggaa cgacgcagaa cctgcacagg
      421 aaagcgacga gctgatcgtt aaagatgcta acggcaatct gctggctgac ggcgacagcg
      481 ttaccatcat taaagatctg aaggtgaaag gtagctcttc gatgctgaaa attggcacca
      541 aagtgaaaaa catccgcctg gttgaaggcg accataacat cgattgcaaa atcgacggtt
      601 ttggtccgat gaaactgaaa tctgagtttg tgaaaaagaa ctgattgtat tgtgatcggt
      661 aagccggata aggcgctcgc gccacatccg gcaacgatgc cgactgcctg atgcgacgct
      721 gaccgcgcct tatcaggctt ccctctcatc tgtataaatt tcgaactaca cttaactggc
      781 ttctcttaac tgaggtcacc atcatgccgt taagtcccta cctctctttt gccggtaact
      841 gttccgacgc gattgcctat tatcaacgta cgttgggcgc ggaactgctc tataaaatca
      901 gcttcggcga aatgccaaaa tcagcgcagg acagcgccga gaactgccct tccggaatgc
      961 aatttcccga taccgccatc gcccacgcca acgtgcgcat tgccggaagc gacatcatga
     1021 tgagcgatgc tataccgtca ggaaaagcca gctactccgg ctttacgctg gtgctcgatt
     1081 cgcaacaggt cgaagaagga aaacgctggt ttgataacct tgccgctaac ggaaaaattg
     1141 aaatggcctg gcaggaaact ttctgggcgc atggcttcgg caaagtcacc gataaatttg
     1201 gcgtaccgtg gatgattaat gtcgtcaaac aacaaccaac gcaataaccc gccgggaggc
     1261 ccgccctccc gcactgtcat cgaattcccg ttaactcttc atctgttagt cacttttaat
     1321 taaccaaatc gtcacaataa tccgccacga tggagccact tttttaggga ggctgcatca
     1381 tgcaaacgat tatccgtgtc gagaagctcg ccaaaacctt caatcagcat caagcgctgc
     1441 atgcggttga tctgaacatt catcacagtg aaatggtggc tctgcttggg ccgtcgggtt
     1501 ccggcaaatc cacactttta cgtcacttaa gcggtttgat taccggcgat aaatccgccg
     1561 gcagccatat cgagctgctg ggccgacagt ccagcgcgaa ggccgtctgg cgcgcgatat
     1621 ccgcaaaagc cgcgcccata ccggctacat cttccaacaa ttcaacctgg tgaatcgcct
     1681 gagcgtactg gagaacgtgc tgattggcgc gctcggcagc acgccgttct ggcgcacctg
     1741 ttttagctgg ttcacccgcg agcagaaaca acgcgcgtta caggcgctga cccgcgttgg
     1801 catggtgcat tttgcccatc aacgcgtttc caccctctcc ggcggacagc agcagcgtgt
     1861 ggcgattgcc cgcgcgctga tgcagcaggc gaaggtgatt ctggccgatg aacccatcgc
     1921 ctcgctggac ccggaatccg cccgcatcgt gatggacacc ctgcgcgaca tcaatcagaa
     1981 cgacggcatc accgtagtcg tcacgctgca tcaggtggat tacgccctgc gctactgcta
     2041 acgcatcgtc gccctgcgcc aggggcacgt tttctacgac ggcagcagcc aacagtttga
     2101 taacgaacgt tttgaccatc tctaccgcag cattaatcgc atcgaagaga acgcgaaagc
     2161 tgcctgacat ccccatcatt gaggaaaacg aatgaacgct aagataattg cctcgctggc
     2221 cttcaccagc atgttcagcc tcagcaccct gttaagcccg gcacacgccg aagagcagga
     2281 aaaggcgctg aatttcggca ttatttcaac ggaatcacag caaaacctga aaccgcaatg
     2341 gacgccattc ttacaggata tggagaagaa gctgggcgtg aaggtgaacg ccttctttgc
     2401 cccagactac gcaggcatta tccagggaat gcgcttcaat aaagtggata tcgcctggta
     2461 cggcaacctg tcggcaatgg aagcggtgga tcgcgccaac ggccaggtct tcgcccagac
     2521 ggtcgcggcg gatggatcgc caggttactg gagcgtgttg atcgtcaaca aagatagtcc
     2581 gatcaacaac ctgaacgatc tgctggcgaa gcggaaagat ctcaccttcg gcaatggcga
     2641 tcctaactcc acctctggct tcctcgtccc cggttactac gtctttgcca aaaacaatat
     2701 ctccgccagc gactttaagc gcaccgtcaa cgctgggcat gaaaccaacg cgctggccgt
     2761 cgccaacaag caggtggatg ttgccaccaa caacaccgaa aacctcgaca agctgaaaac
     2821 ctccgcgcca gagaagctga aagaactgaa ggtgatctgg aagtcgccgc tgatcccagg
     2881 cgatccgatc gtctggcgca agaatctctc cgaaaccacc aaagacaaga tctacgactt
     2941 ctttatgaac tacggaaaaa cgccggaaga gaaagcggtg ctggaacgcc tgggctgggc
     3001 cccgttccgc gcctccagcg acctgcaact ggtgccgatt cgccagctcg cactgtttaa
     3061 agagatgcag ggcgtaaaaa gcaataaagg actgaatgag caggacaagc tggcgaaaac
     3121 caccgagatt caggcgcagc tggatgacct ggaccgcctg aacaacgcgt taagcgcgat
     3181 gagttcggtg agtaaagcgg tgcagtaatg tgctcgatcg gtcccctatc ccttgaggga
     3241 gagggttagg gtgaggggga aatgcgcacg ctgatgccct catcccggcc ctctcccaca
     3301 gggagaaaac attaaacgga gccaaacatg caaaccatca ccatcgcccc acccaagcgt
     3361 agctggttct cgcttctgag ctgtgccgtt gttctcgccg tgctggtcgt ctcgtggcag
     3421 ggcgcggaaa tggccccgct tacgctgatt aaagacggcg gcaacatggc aaccttcgtt
     3481 gccgacttct tcccgcccga tttcagccag tggcaggatt acctcaccga aatggccgtc
     3541 acgctgcaaa tcgccgtctg gggcaccgcg ctggcagtgg ttctctccat ccccttcggt
     3601 ctgatgagcg ccgaaaacct ggtgccgtgg tgggtttacc agcccgttcg ccgcctgatg
     3661 gatgcctgcc gcgccattaa cgaaatggtc ttcgccatgc tgttcgtggt cgccgtcggt
     3721 ctcggcccgt tcgctggcgt gctggcgcta tttatccaca ccaccggcgt gctctccaag
     3781 ctgctttccg aagcggtgga agcgatcgaa cccggcccgg tagaaggcat tcgcgccacc
     3841 ggcgccaaca agctggaaga gatcctttac ggcgtgctgc cacaggtaat gccgctgctg
     3901 atctcctact ccctctatcg cttcgaatcc aacgtccgct cggcgaccgt cgtcggcatg
     3961 gtcggtgcag gcgggatcgg cgtcaccctg tgggaagcga ttcgcggttt tcagttccaa
     4021 caaacctgcg ccctgatggt gcttatcatc gtcacggtca gcctgctgga tttcctctct
     4081 caacggttgc gtaagcactt tatctgataa gcgaggcatt gatatctatg cacttgtcta
     4141 cacatccgac cagctaccca acacgctatc aggagatagc cgcaaaactt gagcaggagc
     4201 ttcgtcaaca ctatcgctgc ggcgactatc ttcccgccga gcagcagctg gcggcgcgct
     4261 ttgaggtaaa tcgccacacc ctgcgccgcg ccatcgacca actggtggaa aaaggctggg
     4321 tacagcgccg tcagggcgtc ggcgtgctgg tgctgatgcg cccgttcgat tacccgctca
     4381 acgcccaggc gcgttttagc cagaacctgc tggatcaggg cagccatccc accagcgaaa
     4441 aactgctgtc ggtgctgcgc ccggcatctg gtcacgtcgc tgacgcgctg gggataaccg
     4501 agggggagaa cgtcatccac ctgcgcaccc tgcgccgggt caacggcatc gcgctctgtt
     4561 taatcgacca ctactttgcg gacctcaccc tttggccgac gctgcaacgc ttcgacagcg
     4621 gctcgctgca cgattttctg cgcgagcaaa ccgggattgc gctgcgccgc agccagacgc
     4681 ggatcagcgc ccgccgcgcc caggccaaag agtgccagcg tcttgaaatc ccgaatatgt
     4741 cgccgctgct gtgcgtgcgc acccttaacc accgtgacgg tgaaagcagc ccggcggagt
     4801 actccgtcag cctgacgcgc gccgacatga ttgaattcac tatggagcac tgaatgcacg
     4861 cagatatcgc gacccgccag cactggatgt ccgtgctggc gcacagccaa ccggctgaac
     4921 tggcagcccg cctgaacgcg ctgaacatca ccgccaacta tgaagtgatc cgcaccgccg
     4981 aaaccggcct ggtacagatt caggcgcgaa tgggcggtac cggcgaacgc ttttttgccg
     5041 gcgacgccac gctgacccgc gccgccgtac gcctgactga cggcaccctc ggctacagct
     5101 gggtgctggg gcgcgacaaa cagcacgccg aacgctgcgc gctgattgac gcgttgatgc
     5161 agcaatctcg ccattttcaa aacttatcag aaacccttat tgccccactg gacgctgacc
     5221 gtatggcacg cattgccgca cgccaggccg aagtgaacgc cagccgggtc gacttcttta
     5281 cgatggttcg cggagacaac gcatgaccct ggaaaccgct tttatgcttc ctgtgcagga
     5341 tgcccagcac agttttcgtc gcctgttaaa ggccatgagc gagccgggcg tgattgtcgc
     5401 cctgcatcag ctcaaacgcg gctggcagcc gctgaatatc gccaccacca gcgtgctgct
     5461 gacgctggct gataacgaca cgccggtgtg gctttccgcg ccattaagta acgatatcgt
     5521 cagccagagc ctgcgttttc ataccaacgc gccgctggtc aatcag
//
LOCUS       DAJVUN010000223         5535 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.224, whole genome shotgun sequence.
ACCESSION   DAJVUN010000223 DAJVUN010000000
VERSION     DAJVUN010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5535
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.224"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..1046)
                     /locus_tag="OQQ76_003691"
     CDS             complement(<1..1046)
                     /locus_tag="OQQ76_003691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HCS1970024.1"
                     /translation="MREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQR
                     TEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKEL
                     IARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK
                     KLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQEN
                     IIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQ
                     FRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVS
                     TQWTSFSTEENSRA"
     gene            1537..1647
                     /locus_tag="OQQ76_003692"
     CDS             1537..1647
                     /locus_tag="OQQ76_003692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA invertase"
                     /protein_id="HCS1970025.1"
                     /translation="MLIGYVRVSTNDQNTDLRRNALNCAGYELIVERMGA"
     gene            1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ76_003693"
     CDS             1927..2922
                     /gene="pgl"
                     /locus_tag="OQQ76_003693"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HCS1970026.1"
                     /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS
                     PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYN
                     AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG
                     HLVAQDPAEVTTIEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL
                     DIMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ
                     PRGFNVDHSGKYLIAAGQKSHLISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH"
     gene            complement(2963..3916)
                     /locus_tag="OQQ76_003694"
     CDS             complement(2963..3916)
                     /locus_tag="OQQ76_003694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308823.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1970027.1"
                     /translation="MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEED
                     LHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPT
                     AVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFT
                     PLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLD
                     WFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD
                     AVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG"
     gene            4100..5152
                     /locus_tag="OQQ76_003695"
     CDS             4100..5152
                     /locus_tag="OQQ76_003695"
                     /EC_number="5.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalomesaconate tautomerase"
                     /protein_id="HCS1970028.1"
                     /translation="MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGND
                     LEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGA
                     FAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTLNGVVEYEGSARIDGVPGTAAPVA
                     LTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELD
                     ADKALLACIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRA
                     LAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRAS
                     VIRTTRKIFSGEVYLP"
     gene            5228..>5535
                     /locus_tag="OQQ76_003696"
     CDS             5228..>5535
                     /locus_tag="OQQ76_003696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HCS1970029.1"
                     /translation="MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIV
                     GLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSALVMTPT
                     "
BASE COUNT         1457 a         1145 c         1326 g         1607 t
ORIGIN      
        1 aatgcccggg aattctcctc ggtggaaaaa gaagtccatt gtgtagaaac ctcccgacga
       61 tctgcttcag gaaaccaggc tgccacagtt tcgggaagag gggggatctg aaagttctgc
      121 cccccttcag tgatgactct gatatggcgc gaatgtaaat tttgcggcaa catctggcgt
      181 aaaaacagtc tgttttggtc tgacagggaa atacgaaact gaggcccgtt aaaatttgga
      241 accgaagttt gctgtattaa gaatagcaga gtttgatctg ataaggggtt atttgcaatc
      301 tcaatagtta tatgaggatc taaacgaaaa agatttgtcg ggattgtagt tatttggttg
      361 ttttcaaaat aaaaaaatct tctcatgata atattttctt ggatgtttgg taagttgctt
      421 aatctattgc tatatgcaaa aagaagttgc agtctcctag gtaaaggggg cagttcagta
      481 agatggttgt gcgcaacctt aagtatctta agattagaag gcagagatgg aagagtttgc
      541 agttcgttgt tcctaacctc aagttttttt aaattcaagg gtaatgaagg cagtgtggat
      601 aacctattat actctgcgct tagtgatttg atggtgtctg gtaataacgg cagattctct
      661 aattgatttt cggacacatc caaagttatt agataatgtg gtaatgcaga tatatgtgtt
      721 aagaaattat ctcttgcaat aagttcttta atattttcag gtagatcagt aaggatggtt
      781 aatttattac agctcacatc aagcttttta atgcaagcag ggagtacagg taacgaggaa
      841 agcgccaagg ctcgcaggtc cagtttatgc cccttagagg taagacatgc acgaagtctt
      901 cttaccgcct cagtacgctg ttcttccggt aacccctgtt tctcccaatc atcccattcg
      961 gacaaataat ggttggggga tgtaattgtg ctgatatgtg gaaataaaca ggatgaaata
     1021 tttctgagca tattaatttc tcgcatatgg atatggaatt agattgtgaa taaattgtat
     1081 ttaatgtatc tctcctaatg aggagggtgt ttcagaatat tcgccataag ggaatgagtg
     1141 ttatatcatg ctttctatcc tggtaagtat atttgctttt ttcgtatatt tggttcatct
     1201 ttttttgatg ttttacatat tcacaatgca gaggatttat accagaagac attagtcttg
     1261 agtaagatac tacaacatct ccaactattt tagccagcct gactacttga cttggtaata
     1321 tttgttgcta ataatcatgt ataaaataag cttatataca tagtaacttc agcaaaggat
     1381 ttagtaatga tccaaatcat atatcaatgt actgtttttt tctttaaaaa aacagtacat
     1441 tctattttat aatgactgtg tattcccatg gaaggagatc acccaattct cccccccgac
     1501 ttttgacgca gtgtcttgtt aacaggggga tttaccatgc ttattggcta tgtacgcgta
     1561 tcaacaaatg accagaacac cgatctacga cgtaatgcgt tgaactgtgc aggatatgag
     1621 ctgattgttg agcgaatggg agcttgattg gaagttgtta gggtatggtg tttacggtcg
     1681 ttgatatggc gaacaaacgc ggggagcgtc acgctcccta aatggtcgcg aaaatacctg
     1741 tggcattgtc aaatttgtga cggtgactaa tattttaatg atatgccatt cgaaatggtg
     1801 tgctaacgta ttgatttaat tgtgacgcga tgttgtattt tatcgcgttt tgttgtctgt
     1861 ttttcattcg cttgatgttg ctatttacat gaaaaataaa gaatttattg tttttgaggt
     1921 gtgtttatga agcaaacagt ttatatcgcc agccctgaga gccagcaaat tcacgtctgg
     1981 aacctgaatc atgaaggcgc actgacgctg acacaggttg tcgatgtgcc ggggcaggtg
     2041 cagccgatgg tggtcagccc ggacaaacgt tatctctatg ttggtgttcg ccctgagttt
     2101 cgcgtcctgg cgtatcgtat tgccccggac gatggcgcac tgacctttgc cgcagagtct
     2161 gcgctgccgg gtagtccgac gcatatttcc accgatcacc aggggcagtt tgtctttgta
     2221 ggttcttaca atgcgggtaa cgtgagcgta acgcgtctgg aagatggcct gccagtgggc
     2281 gtcgtcgatg tggtcgaggg gctggacggt tgccattccg ccaatatctc accggacaac
     2341 cgtacgctgt gggttccggc attaaagcag gatcgcattt gcctgtttac ggtcagcgat
     2401 gatggtcatc tggtggcgca ggaccctgcg gaagtgacta ccattgaagg ggccggcccg
     2461 cgtcatatgg tattccatcc aaacgaacaa tatgcgtatt gcgtcaatga gttaaacagc
     2521 tcagtggatg tctgggaact gaaagatccg cacggtaata tcgaatgtgt ccagacgctg
     2581 gatataatgc cggaaaactt ctccgacacc cgttgggcgg ctgatattca tatcaccccg
     2641 gatggtcgcc atttatacgc ctgcgaccgt accgccagcc tgattaccgt tttcagcgtt
     2701 tcggaagatg gcagcgtgtt gagtaaagaa ggcttccagc caacggaaac ccagccgcgc
     2761 ggcttcaatg ttgatcacag cggcaagtat ctgattgccg ccgggcaaaa atctcacctc
     2821 atctcggtat acgaaattgt tggcgagcag ggactactgc atgaaaaagg ccgttatgcg
     2881 gtcgggcagg gaccaatgtg ggtggtggtt aacgcacact aaccgctgat ttaaccggcg
     2941 cagtctctcc tgcgccggtg tattaaccta tctcctgtaa cgcatgtctc tggcgttcga
     3001 cgatattggt ccacaaattg tctttatcgt cagtccacaa attaatcagc aaggcaaaaa
     3061 agcgttcagc tgccggagaa agcacggcat ctttgcggcg aataatcccc aatgtccgac
     3121 gtataacggg ttccaccagt gggataccaa taatcgaaga atagggcgca tggggcattg
     3181 ccagaccagg aagcgccgaa atccccagtc ctgcctccac tagtcctaat gacgtcgaaa
     3241 gatgacgcac ttcgtaaaac cagtccagct tccagggctt gtcggccagc tgttgttcta
     3301 tcaacagtcg gttgccgctg gaggagcgta cgccaatcat tttgtaaccc actaactcct
     3361 gccattctac aagctgcttt ttggccaatg gatggtcacg ccgacaggcc agcacgaacg
     3421 gctcgttgac cagtggggta aaatcaatgg atgaatttgt gacgttgttc atgtttatgc
     3481 caaagtctga ttcgttacac agcaccgatt ccatgcaatt attcgtgcct tgttccagaa
     3541 tccgcacttt aatattggga tacagctcat taaatttacc gattgccagc ggtaaaaaat
     3601 aaaatactgc ggtcggaata cacgctaacg tcaccatacc acgatgataa gcattcatat
     3661 cacgaatatt aaaaagcgtt tcatcgaatt tctttattaa ttcccgcgcc tccgggagca
     3721 acctttttcc tgcttttgtt aacgtaacct tgcgagttgt acgctcaaat agttgaatat
     3781 gtaaatcttc ctccatcttt tttattcttc gcgttaatgc aggttgcgta atattgagta
     3841 atttagcggc attgttaaac gaactggact ctgccagtat gacaaatgcc ttcatacttg
     3901 ataattcatg cttcattatt actccggaaa atggaagcga cgattttggg tggctggccg
     3961 ttaaaaattt taactgcatt tagccaactt aaattaatga aaaaatgtta ttaatcgttg
     4021 agctaaagtc attagagatg ctttgccctt aatgtaacca tatcgcaata agttatgttt
     4081 ttaaattgag ggcattatta tgaaaaaaat accctgcgtg atgatgcgag gtggaacctc
     4141 gaggggcgcg ttcctgttag cggaacattt acccgaagat caaacgcagc gcgataaaat
     4201 attgatggca attatgggtt ccggtaacga tctggaaatt gacggtattg gcggcggtaa
     4261 tccactgacc agtaaagtcg ccattattag ccgttccagc gatccgcgtg ctgatgtcga
     4321 ttatctgttt gcgcaggtaa tcgttcatga gcaacgtgtc gataccacgc ctaactgtgg
     4381 caatatgctg tctggtgttg gggcattcgc cattgaaaat ggtttgattg cagcgacttc
     4441 gccagttact cgcgtacgta tccgcaacgt caatacgggt acgttcatcg aagctgatgt
     4501 gcaaacgcta aatggtgttg tcgagtacga gggtagtgcc agaatagacg gcgtaccggg
     4561 tactgccgca ccggttgcgc tcactttcct gaatgccgct ggaaccaaaa ccggaaaagt
     4621 tttcccgact gataatcaga ttgattattt tgacgatgtc ccggtgacct gtatcgatat
     4681 ggcgatgcca gtcgtcatta ttccggctga atatctggga aaaacaggtt atgaattacc
     4741 ggcggaactg gatgccgaca aagcattatt agcctgcatt gaatctatcc gtctacaagc
     4801 gggtaaagca atgggcttag gtgatgtcag taatatggtt atccctaaac ctgtgcttat
     4861 ttctccagcg cagaaaggcg gggcaattaa tgtgcgttat tttatgccgc attcttgcca
     4921 tcgcgcgctg gcgataaccg gtgctattgc tatttccagt agttgtgcat tggaaggcac
     4981 cgtcacccga caaatcgtcc cttctgtagg atatggcaat atcaatattg aacaccccag
     5041 tggtgcgctc gacgttcatt taagtaatga aggtcaggat gccacgacgt tacgcgcatc
     5101 tgttattcgg acaaccagaa aaatattttc cggtgaagtt tatcttccct gaaaaaattc
     5161 gttgtcagga taaggataat caataaagga cttctgtatg agtcatacag aaagaacagg
     5221 attttaaatg aataagaaat cgttatggaa gctaattctg atattagcga tcccatgtat
     5281 tattggtttt atgccagctc cggcaggatt aagcgaactg gcgtgggtgc tttttggtat
     5341 ttacctggcg gccattgtgg gtctggttat caagcctttc ccggaacctg tcgtactgtt
     5401 aattgccgtt gctgcctcaa tggtggtggt cggtaactta tccgacggtg cgtttaagac
     5461 caccgccgta ttaagcggtt actcttcagg tactacctgg ctggtgttct cggcgttggt
     5521 aatgactcca actta
//
LOCUS       DAJVUN010000224         5528 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.225, whole genome shotgun sequence.
ACCESSION   DAJVUN010000224 DAJVUN010000000
VERSION     DAJVUN010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5528
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.225"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..870)
                     /locus_tag="OQQ76_003697"
     CDS             complement(<1..870)
                     /locus_tag="OQQ76_003697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310054.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1970030.1"
                     /translation="MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSK
                     TLNELEQLTGTRLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDV
                     VRIGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
                     PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDAL
                     VQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGA
                     GEPIGILTRVDAMF"
     gene            1087..2430
                     /locus_tag="OQQ76_003698"
     CDS             1087..2430
                     /locus_tag="OQQ76_003698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HCS1970031.1"
                     /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL
                     ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA
                     GVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR
                     QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFP
                     GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF
                     AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP
                     DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHLGDDPQPLIERGWVVAQPITYEDFLPVS
                     AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL"
     gene            2655..4310
                     /gene="opgD"
                     /locus_tag="OQQ76_003699"
                     /gene_synonym="mdoD"
     CDS             2655..4310
                     /gene="opgD"
                     /locus_tag="OQQ76_003699"
                     /gene_synonym="mdoD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein OpgD"
                     /protein_id="HCS1970032.1"
                     /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR
                     FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD
                     AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG
                     FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW
                     FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP
                     MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP
                     KGFGLLQLDRDFSHYQDIMGWYNKRPSLWLEPRNKWGKGTIGLMEIPTTGETLDNIVC
                     FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFPEGWAPGEHYPEK
                     WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD
                     STDPVDMRMYLRCQGDAISETWLYQYFPPASDKRQYVDDRVMS"
     gene            4450..4674
                     /locus_tag="OQQ76_003700"
     CDS             4450..4674
                     /locus_tag="OQQ76_003700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415943.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HCS1970033.1"
                     /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGFDGRGY
                     NAEVVRMKKQKLQLKDEMLKILQQESVKGV"
     gene            4737..5273
                     /gene="rimL"
                     /locus_tag="OQQ76_003701"
     CDS             4737..5273
                     /gene="rimL"
                     /locus_tag="OQQ76_003701"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12-serine
                     acetyltransferase"
                     /protein_id="HCS1970034.1"
                     /translation="MTETIKVSESLELHAVAESHVTPLYQLICKNKTWLQQSLNWPQF
                     VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE
                     SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE
                     FLNDAYDDVNLYARIIDS"
     gene            complement(5268..>5528)
                     /locus_tag="OQQ76_003702"
     CDS             complement(5268..>5528)
                     /locus_tag="OQQ76_003702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970035.1"
                     /translation="EGNCVLKHHVLIGGNAVVRGEPILLDEHVVIQGESRISGAVIIE
                     NHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL"
BASE COUNT         1419 a         1320 c         1400 g         1389 t
ORIGIN      
        1 gaacatcgca tctacgcggg tcagtattcc aatcggttcg cctgcaccat gtcccggaac
       61 aggcagggcc accagcgtgg catgacgcag gtcgtctttt accgcgccag aagggacaaa
      121 ccacacgtag tcgtattcaa ccgtaagttg acgagatagc gaagcagaca gcgtttcgat
      181 acaacccgaa ggaattttac atccctggct ctgtactaat gcatctgaat gctggcgtgg
      241 cgcagtgcct tctggtgata caacgaccgg ccattccagc actcggctta gcgttacgtt
      301 ctcctgaagt agcgggtgat tagggcggac aaccagcttc agcgattcaa gaaacagcag
      361 ttcgtaatta agcccggtca tcagttcagg atctgacatc cgaccaatgc cgatatcgat
      421 ttccccggtt ttcaaacccg ccagaatcat agggttactc attgtcgcaa cttgcaaggt
      481 cgtctctttt tgttgctgat gaaactgacc tataaccgaa ggtaatatcc ccagtgccgc
      541 agtaggtagt gcaccaatcc tgacgacatc attattaaga ccttctttac gatgaagcga
      601 ctgtccggca gtgttgatgg cgtcaagaac tctgactgca tgcgttaaaa attgttcgcc
      661 gggtaaggta agttgcgccc cctgacgacc acgctcaaac aagcgagtgc ccgtcagctg
      721 ctccagttca ttcaatgtct tagagagcgc aggttgactc aaattaaggg tttcagccgc
      781 gcgccccaaa gttccttgtt gtgcgacagc tacgaatgta tgaaggtggc gcaaacggat
      841 gcgctgacta aacagactat ttttttccat aagcgatgtt aaaaacgaag cggtgtcgct
      901 gacaagtgaa gttgtttgat tatgataact tgattgcaaa atataattaa caattaaagc
      961 aattgtgtta cagcaaaatg gataatattg atgttttcgc ggcgagatca cagtttgtaa
     1021 attcttcccg ccagagtgaa tgcggttacc tacactccag attactgacc actggaggca
     1081 gacactatgg cgaacagcat cacggcggat gagattcggg aacagttttc gcaggcaatg
     1141 tcagccatgt accagcaaga agttccgcag tacggcacgc tgctggaact ggtagctgat
     1201 gtgaatctgg ctgtgctgga aaacaatcct caactgcacg aaaaaatggt aaatgcagac
     1261 gagctggcgc gactgaatgt tgaacgtcat ggggcgattc gcgttgggac tgcacaagag
     1321 cttgctactc ttcggcggat gtttgccatt atggggatgt acccggtgag ctattacgat
     1381 ctctcgcagg caggggtgcc ggtacattcg acagcatttc ggcccattga tgatgcttct
     1441 ctggcgcgta atcccttccg cgtttttacc tccttactcc gccttgagct tatcgagaac
     1501 gaaattttgc gccagaaagc ggcggagatt ctgcgtcagc gcgatatctt caccccacgt
     1561 tgtcgacaac tgttagagga atatgagcag cagggcggtt ttaacgaaac acaggcacag
     1621 gaatttgtgc aagaggccct ggaaacgttt cgctggcacc agtcagcaac ggtagatgaa
     1681 gaaacctatc gcgccttgca caacgaacat cggttgattg ctgatgtggt ctgttttcct
     1741 ggatgccata tcaaccacct gacgccacgt acgctggata ttgaccgggt gcagtcgatg
     1801 atgcctgaat gcggaattga acccaaaatt ctcatcgagg ggccgccgcg ccgcgaggta
     1861 ccgattttac tacgccagac cagctttaaa gcactggaag agacggtgtt gtttgcgggg
     1921 cagaaacagg gcacgcatac cgcgcgcttt ggtgaaattg agcagcgtgg cgtggcatta
     1981 acgccgaaag ggcgacaact gtatgatgat cttctgcgta acgctggaac cgggcaggat
     2041 aatctcactc accaaatgca tttacaggaa accttccgca cttttcctga cagtgagttt
     2101 ttaatgcgtc agcaagggtt ggcatggttc cggtaccgtc tgacgccttc gggtgaggcg
     2161 catcgtcagg cgattcatct tggagacgat ccacagcctt taattgaacg tggttgggta
     2221 gtggcgcaac ccatcaccta tgaagatttc ttgcccgtta gcgcggcggg gatcttccag
     2281 tcaaatctgg gtaatgaaac gcagacacgc agtcacggta atgccagtcg cgaagcattt
     2341 gagcaggcgt tgggttgtcc ggttttggat gagttccagc tttaccagga agcggaagaa
     2401 cgcagtaaac gtcgctgtgg tttgctttaa attctgacca tccgcctttg caaaaatttg
     2461 cctgatttta caaacgaatc aggctcatcc catcgacata aaaaaaatgc cgatttatgc
     2521 atattctctc agttcaacaa ttggattatt aataaatatt gtctagagtg agcggtcata
     2581 aataagcact ttcttgccgc tgaaaacgac cagcgcggga ccattcacaa caccagaagg
     2641 actcactttc aggtatggat cgtagacgat ttattaaagg ttcaatggct atggccgccg
     2701 tgtgcggtac cagcggcatt gcttctcttt tttctcaggc ggcattcgcg gcagattctg
     2761 atattgccga cgggcaaacc cagcgttttg acttctccat tctacagtca atggcgcacg
     2821 acttagcgca aacagcgtgg cgtggtgcgc ctcgtccgtt acctgacacg ctggcgacaa
     2881 tgacgccgca ggcttataac agtattcaat acgacgccga aaaatcgctc tggcataacg
     2941 ttgagaaccg tcaactggac gctcagttct tccatatggg aatgggattc cgtcgccgcg
     3001 ttcgtatgtt ttctgtagat ccagcaacac atctggcgcg tgaaattcac tttcgcccgg
     3061 agttgttcaa atacaacgat gcgggtgttg atacaaaaca attagaaggg caaagcgatc
     3121 tcggctttgc cggttttcgc gtgtttaaag cccccgaact ggcgcgccgt gatgtagtat
     3181 catttctcgg cgcgagttat ttccgcgccg ttgatgatac atatcaatac ggtttgtcgg
     3241 cccgcggcct ggcgatcgac acttacaccg acagtaaaga agagttcccc gactttaccg
     3301 ccttctggtt tgatacggta aaaccggggg caactacctt taccgtttat gcgttgctcg
     3361 atagcgccag cattactggt gcctataagt tcactatcca ttgtgagaaa agtcaggtga
     3421 ttatggatgt ggaaaatcac ctgtatgcgc gcaaagacat taaacagctg ggcattgcgc
     3481 cgatgaccag tatgttcagc tgcggtacta atgaacgtcg gatgtgcgat acaattcatc
     3541 cgcaaattca tgactctgat cgtctgtcca tgtggcgggg caacggcgag tggatttgcc
     3601 gtccgctgaa taatccgcaa aaattgcagt tcaatgctta caccgacaac aacccgaaag
     3661 ggtttggttt attgcaactg gatcgtgact tctcccatta tcaggacatt atgggctggt
     3721 ataacaaacg cccaagtctg tggctggaac cgcgtaacaa gtggggtaag ggcaccatcg
     3781 gcctgatgga aatcccaaca acgggcgaaa cgctggataa cattgtctgt ttctggcagc
     3841 cagaaaaagc tgtaaaagca ggtgatgagt ttgcattcca gtatcgtctg tactggagtg
     3901 cgcaaccgcc tgttcattgc ccattagcgc gcgttatggc gacgcgtacc ggcatgggcg
     3961 gtttcccgga aggttgggcg ccaggtgaac actatcccga aaaatgggcg cgtcgttttg
     4021 ccgtcgattt cgttggtggt gatctgaaag ctgccgcgcc aaaaggcatt gagccggtga
     4081 ttacgctttc cagtggggaa gcgaagcaaa tcgaaattct ctatattgaa cccatcgatg
     4141 gttatcgtat tcagtttgac tggtatccga cttcggactc cactgatccg gtcgatatgc
     4201 ggatgtatct acgttgtcag ggggacgcta tcagtgaaac atggctgtat cagtatttcc
     4261 cgccagcgtc ggataaacgt cagtatgttg acgaccgcgt gatgagttaa tcgttttttc
     4321 ttcggcacct tcttcgggag gtgccgtctg gttaaacacg atcccgctcg catttttccc
     4381 taagttaaat gagtaatctg atggtgtgta tttcagatac accttgtcag ccactaacag
     4441 ggagtgcgta tgtttccaga ataccgagat ttaatatccc gtctgaaaaa cgaaaatcct
     4501 cgctttatgt ccttgttcga taaacacaat aaacttgatc atgaaattgc cagaaaggaa
     4561 ggtttcgacg gtcgagggta caatgcggaa gtggtccgca tgaaaaaaca aaagctacag
     4621 ttaaaagatg agatgctcaa aatcctgcag caggagagcg tcaaaggggt gtaaactttc
     4681 ctaagccgcc agccaggcgg cttttttaac aacagcatgg attgactgga gataagatga
     4741 ctgaaacgat aaaagtaagc gaatcacttg aattacatgc tgttgcggaa agtcacgtca
     4801 cacctcttta tcagttaatc tgtaaaaata aaacctggtt acagcagtcg ctaaactggc
     4861 cgcagttcgt tcagagtgaa gaggacacgc gaaaaacggt gcagggtaat gtgatgttgc
     4921 atcaacgcgg ctatgccaaa atgttcatga ttttcaaaga agatgaactt atcggcgtta
     4981 tctcgtttaa tcgtattgaa ccactgaata aaactgctga aatcggctac tggctggacg
     5041 aatctcatca ggggcagggg atcatttctc aggcgctgca ggcattgatt catcattacg
     5101 ctcagtctgg tgaacttaga cgcttcgtga tcaaatgtcg ggtggacaat ccgcaaagca
     5161 accaggtcgc tttgcgcaat ggttttatcc ttgaaggttg cctgaaacag gctgagttcc
     5221 tgaatgatgc ctatgatgat gtgaacttat acgcgcgtat tatcgattca taataaccct
     5281 gccagcggcg ttcgcgtaat gcgctcctcg ccgttaatga cttttggacc acggacatga
     5341 accgtgtcgc catcaaaggc ttcaacgacg gcgtggtcgg ttaactccac atggttttca
     5401 attatcaccg cacctgaaat acggctctca ccttgtatta caacgtgctc gtcgagcaga
     5461 atcggttcac cacgtaccac ggcatttccg ccaatcaaga catgatgttt taacacacaa
     5521 ttaccttc
//
LOCUS       DAJVUN010000225         5478 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.226, whole genome shotgun sequence.
ACCESSION   DAJVUN010000225 DAJVUN010000000
VERSION     DAJVUN010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5478
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.226"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(24..596)
                     /locus_tag="OQQ76_003703"
                     /pseudo
     CDS             complement(24..596)
                     /locus_tag="OQQ76_003703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706347.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YbaY family lipoprotein"
     gene            814..1674
                     /gene="tesB"
                     /locus_tag="OQQ76_003704"
     CDS             814..1674
                     /gene="tesB"
                     /locus_tag="OQQ76_003704"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HCS1970036.1"
                     /translation="MSQALKNLLALLNLEKIEAGLFRGQSEDLGLRQVFGGQVVGQAL
                     YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF
                     YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV
                     RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIG
                     FLEPGIQIATIDHSMWFHRSFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST
                     VQEGVMRNHN"
     gene            complement(1723..3009)
                     /gene="amtB"
                     /locus_tag="OQQ76_003705"
     CDS             complement(1723..3009)
                     /gene="amtB"
                     /locus_tag="OQQ76_003705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter AmtB"
                     /protein_id="HCS1970037.1"
                     /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF
                     MTIPGIALFYGGLIRGKNVLSMLMQVTVTFALVCILWVVYGYSLAFGEGNNFFGNVNW
                     LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL
                     SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH
                     NLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRG
                     KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC
                     DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA
                     FIGYKLADLTVGLRVPEEQELEGLDVNSHGENAYNA"
     gene            complement(3039..3377)
                     /gene="glnK"
                     /locus_tag="OQQ76_003706"
     CDS             complement(3039..3377)
                     /gene="glnK"
                     /locus_tag="OQQ76_003706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HCS1970038.1"
                     /translation="MKLVTVIIKPFKLEDVREALSSISIQGLTVTEVKGFGRQKGHAE
                     LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI
                     RTGEADEAAL"
     gene            complement(3558..5332)
                     /locus_tag="OQQ76_003707"
                     /pseudo
     CDS             complement(3558..5332)
                     /locus_tag="OQQ76_003707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308530.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SmdB family multidrug efflux ABC transporter
                     permease/ATP-binding protein"
     gene            complement(5325..5471)
                     /locus_tag="OQQ76_003708"
     CDS             complement(5325..5471)
                     /locus_tag="OQQ76_003708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001163619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter"
                     /protein_id="HCS1970039.1"
                     /translation="MQHGHIAQRGNHDELAQQSGWYRDMYRYQQLEAALDDAPEIREE
                     AVDA"
BASE COUNT         1332 a         1592 c         1362 g         1192 t
ORIGIN      
        1 cgggcggaga gggttaacgt cgcttaatat tgcgtaggag ctggaactgc cgaagacgga
       61 ttcacctgag ttggtgaagt cgaaggtacg gtagtcgttg caccaccgct ggcctgaacc
      121 ggcacggcgg tttgctacac cggcaccaat gtcaggtcgg ctttagttcc gcccttgttg
      181 atcaccggct gaacggtatc ggtaataaat accagtttgt cattcacggt aatcgccgca
      241 ctcaacagaa tacgcgcgtt cggctgaaca tctgccgggt taaatggcag aacaaagctg
      301 aatggtgact gtttaccttc ggtacgcacc gctttctgcg ccagcacttt tgacggtgca
      361 tcggctaacg acgcgtcaga aagtgtcacg gtcagcacag catcaggcgg cagtgcgact
      421 ttctgccgga tccagacggt accggagaca ttcggttgct ggatagcagg ttgttgtgtt
      481 gctgaaatag acgtatttgc agccggggct ggcgtctgaa tatccgcgct tttatctgcg
      541 caagccgcca acgcaatcgc aaccgctaaa ccactggcca tgtgcacgag tttcattcat
      601 ttctccttat tatcaatgca ccagcgggct aactttcctc gccggaagag tggttaacaa
      661 aatagtaacg tcaataagtg tggcacacat cacgcatttc tgcctgtaat cagcccgtaa
      721 ttcagattat tgcacccatc ggaccagtgg caaatttgcg ttatactcaa ctcactttgg
      781 cttgctgcgg cagctttgtt actggagagt tatatgagtc aggcgctaaa aaatttactg
      841 gcattgttaa atctggaaaa aattgaggca ggactctttc gcggccagag tgaagattta
      901 ggtttacgcc aggtgtttgg cggccaggtc gtgggtcagg ccttgtatgc tgcaaaagag
      961 accgtcccgg aagagcggct ggtacattcg tttcacagct actttcttcg cccaggcgat
     1021 agtaagaaac cgattattta tgatgtcgaa acgctgcgtg atggtaacag cttcagcgcc
     1081 cgccgggttg ctgctattca aaacggcaaa ccgatttttt atatgacggc ctctttccag
     1141 gcaccagaag cgggtttcga acatcaaaaa acaatgccgt ccgcgccagc gcctgatggc
     1201 ctgccttcgg aaacgcaaat cgcccaatcg ctggcgcacc tgctgccgcc agtgcttaaa
     1261 gataaattca tctgcgatcg tccgctggaa gtccgtccgg tggagtttca taacccactg
     1321 aaaggtcacg tcgcagaacc acatcgtcag gtgtggatcc gcgcaaatgg tagcgtgccg
     1381 gatgacctgc gcgttcatca gtatctgctc ggttacgctt ctgatcttaa cttcctgccg
     1441 gtagctctac agccgcacgg catcggtttt ctcgaaccgg ggattcagat tgccaccatt
     1501 gaccattcca tgtggttcca tcgctcgttt aatttgaatg aatggctgct gtatagcgtg
     1561 gagagcacct cggcgtccag cgcacgtggc tttgtgcgcg gtgagtttta tacccaggac
     1621 ggcgtactgg ttgcctcgac cgttcaggaa ggggtgatgc gtaatcacaa ttaaaaaaat
     1681 agccggaggt gaaaaccgtc cggctgtttt ttgcagtgct tgttacgcgt tataggcatt
     1741 ctcgccgtga ctgttgacat ccagcccttc tagctcctgc tcttccggta cacgcagacc
     1801 aaccgtcaga tccgccaatt tgtagccaat aaatgccacc acaccggacc agacgatcgt
     1861 aatggcgatg ctttccagct gtaccagcaa ctgatgaccc atcgtcacac cttcagcgaa
     1921 gcccacgccg cccagcgagc tggcggcaaa aatcccggtc atgatacagc cgacaatgcc
     1981 acaaacgccg tgcacaccga agacatcgca gggatcatcc acccgcagca agcgtttgag
     2041 catggtaacg ccccacaagc ccgccagacc agctaccacg ccgataatca acgcgccgcc
     2101 aaccccaatg tagccgcacg ctggcgtcac gccgaccaga ccggcaatcg cgccagaaca
     2161 cgcccccagc agtgaaggct taccacgcag cgcccattca ccgaagatcc agccaagaat
     2221 tgccgccgcc gttgcgacca cagtattcac aaatgccagt gccgcgattt cattcgccgt
     2281 gcccgctgac ccggcgttaa agccaaacca accgatatag agaatggcag tcccggtgaa
     2341 gaccatcggc aggttgtgcg gtttaaacgc ctctttaccg aagcccacgc gtttgcctat
     2401 cagatacgcg cccaccagac cggcgattgc ggcgttaatg tgcaccactg tgccacccgc
     2461 gaaatccagt gcaccgtgag aagccagcaa accgccgccc cacaccatat gcgcaatcgg
     2521 aatgtaagag agcgtcagcc ataccaccac gaaaatcaac acagctgaga agcggattcg
     2581 ttccgccagc gccccaacta tcaagcctac ggtaatgcag gcaaacgatc cctgaaacgc
     2641 tacgtggata tactgataaa tgctgcccat caccgccgtc agttcgatgt ttttcagcat
     2701 caaccagtta acgttgccga agaagttgtt accctcacca aacgccagcg agtaaccgta
     2761 aaccacccag agaatacaga ccagtgcaaa cgtcaccgtc acctgcatca gcatcgacag
     2821 cacgtttttg ccgcgaatca acccaccgta aaacagggca atccccggaa tagtcataaa
     2881 cagcaccagc gcagtacaaa tcatcataaa cgcattgtcg gctttatcgg ccaccgcagg
     2941 tgcagccatt accagtcccg gcagcatcgc cagtgaagca agcccagttt ttatcgtcgc
     3001 tatcttcatt tttcgttcct gttgctgtgt gccagagatt acagcgccgc ttcgtcggct
     3061 tcgccggtac gaatacgaat gacgcgttgc aattcagcga cgaagatttt gccgtcgcca
     3121 atttttccgg tgtaagccgc cttactgacg atatcgatca cttcatcgag ttggtcatca
     3181 gcaattgcca catcaatttt tacttttggc aggaagttga cgctgtattc cgccccccgg
     3241 tacagctcgg catgcccttt ctgacgcccg aaacctttca cttcggtgac ggtcaggccc
     3301 tgaatactaa tggaagataa cgcttcacga acgtcttcca gcttgaatgg tttgattatc
     3361 acggtcacca gcttcataga tcccctccgg tcagaattcg gtaatggttc tgctacacga
     3421 agaaggtatt gcaagcggtg tgccagaaat gaaaaacgag aaagagagca ggaagttaag
     3481 aagattgaaa atgaaaacgc actatgacag tgcacagtgc gttacatttt tgcaccaacg
     3541 atgaaatatt gcgctattca ggcgctcaat gattcttctt cacgcacgct ggctgccagc
     3601 tcttcgcccg caagttgcag ttgatacatc tgccagtagc gtccctgggc cgccagcagt
     3661 tgctggtgag tgccctgctc cacggcttgc ccacgatgaa gcaccagaat ggtgtcggca
     3721 tcaacaatgg tcgataagcg gtgagcaatc accaccagcg tggtatgttc acgcacagcc
     3781 gccagagcat gttgaatcgc ctgttcagta ccggagtcaa tgctggcggt tgcctcatca
     3841 aggatcagga tttgcggcgt ctccaccaac acgcgtgcca gtgccagcag ttgcttttgc
     3901 ccgacggaga gattattccc ctgctcgccc agcggcgtat aaataccatc actcatgctg
     3961 cgcgccagct ccgccagttg cacggtttcc agcgcctgcc agacgcgttc ttcggagata
     4021 tcacgcccca gcgtcacgtt ggcgaggaag gtatccgcca gcaccaccgg atcttgctgc
     4081 accattgcca cgccctggcg cagcgcgctg tgacttagcg aacttaatgg acgaccatca
     4141 aggcgaatct caccttccgt tagcgggtaa tagcccatca ataaactggc gagggtgctt
     4201 ttgccactgc cggtatgccc gaccagtgcc acaaagttac gcgaaggcac agagagatta
     4261 atgttcttta gcaccagatt gtcatcgcga taagcaaatg acacgttatc gacttcgatg
     4321 gtgccactct gtaacgggcg atcatcattg ccatattgct ggcgcggtcc gtccatcagt
     4381 tcaaacacgc gctcaccagc aacaacagcc tgttgcagca tcgcctgttg cgtggtcagt
     4441 tcgattaagg gttcattaag tcgcccaaga tagctgataa acgcatacag cacgcctact
     4501 tcaatggtgc cgctagcgga gaagccaaac agcatcaaca agccacaaag aatgagcgat
     4561 gaaaacagac tcagcagcgg acgcagcaga aaaccgtcga ggcgcagggt ttgcatcctg
     4621 gccatatagt gtgaacgact ggcctccccc atacgttcgc taaatcgcgc ctgctgacgg
     4681 aactgctgga taacgctcat gccattgatg atttcgttaa agccgtcgtt gatatccgcc
     4741 agataggcgc gcacacgacg gacaatcggc gtgctgtaac gctggtatat caccattacc
     4801 accagcacca ccgggaaaat cattatcgcc accagcgcca gtcgaggctg aacatcgcca
     4861 ccagcatcgc gcccaccagt gcggcgctac gcaggacagt tgccactacg gtaacgtaga
     4921 gatcgcggat cacttcagtg tcattagtga cgcgggaaat cacctgcccg acgggttggg
     4981 tatcaaactc gcttaatggc tggcgcaatg cggcatccat cacgtcggta cgcaactgtt
     5041 gcactacgcc tactgccgcc cgattaaaca gcagcgactg cgcgtaatgt agcccggcgg
     5101 caaacagttg tagcccaaca tacgccgcag ccagccctgc aaccattttc aacggcaggt
     5161 tatttttcgc taccatattg tcgataaaat agctgataag cagcggccca ctgacttctg
     5221 ccgctgccgc aacccacatc atcaggaccg caatccccag cggtttacgc cacggcgaac
     5281 cgtacgctaa cagacgcttg agagtcggcc acagttggct aaaactacgc atcgacggcc
     5341 tcctcgcgaa tttccggagc gtcgtcgagc gccgcctcca gttgttgata gcgatacata
     5401 tcgcgatacc agccgctttg ttgcgccagc tcatcatgat tgccacgctg ggcgatatgt
     5461 ccgtgctgca tcacaata
//
LOCUS       DAJVUN010000226         5358 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.227, whole genome shotgun sequence.
ACCESSION   DAJVUN010000226 DAJVUN010000000
VERSION     DAJVUN010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5358
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.227"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..453)
                     /gene="bglG"
                     /locus_tag="OQQ76_003709"
     CDS             complement(<1..453)
                     /gene="bglG"
                     /locus_tag="OQQ76_003709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator BglG"
                     /protein_id="HCS1970040.1"
                     /translation="MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKRAGERINSS
                     GIEKEYALSSHELNGRLSELLSHIPLEVMATCDRIISLAQERLGKLQDSIYISLTDHC
                     QFAIKRFQQNVLLPNPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLPK"
     gene            complement(739..1464)
                     /gene="phoU"
                     /locus_tag="OQQ76_003710"
     CDS             complement(739..1464)
                     /gene="phoU"
                     /locus_tag="OQQ76_003710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HCS1970041.1"
                     /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH
                     NQDSDLAKRVIEGDKNVNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERI
                     GDVADKICRTALEKFSQQHQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYRE
                     DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVK
                     GQDFRHVGGDELDKLLAGKDSDK"
     gene            complement(1479..2252)
                     /gene="pstB"
                     /locus_tag="OQQ76_003711"
     CDS             complement(1479..2252)
                     /gene="pstB"
                     /locus_tag="OQQ76_003711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HCS1970042.1"
                     /translation="MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGP
                     SGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP
                     FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ
                     RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC
                     SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG"
     gene            complement(2343..3233)
                     /gene="pstA"
                     /locus_tag="OQQ76_003712"
     CDS             complement(2343..3233)
                     /gene="pstA"
                     /locus_tag="OQQ76_003712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HCS1970043.1"
                     /translation="MAMVEIQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFW
                     LIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGI
                     MAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIAL
                     ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAI
                     ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT
                     LCVLLLNILARVVFAKNKHG"
     gene            complement(3233..4192)
                     /gene="pstC"
                     /locus_tag="OQQ76_003713"
     CDS             complement(3233..4192)
                     /gene="pstC"
                     /locus_tag="OQQ76_003713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008806729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstC"
                     /protein_id="HCS1970044.1"
                     /translation="MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIIS
                     SWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE
                     LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL
                     FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI
                     VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA
                     EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR"
     gene            complement(4279..5319)
                     /gene="pstS"
                     /locus_tag="OQQ76_003714"
     CDS             complement(4279..5319)
                     /gene="pstS"
                     /locus_tag="OQQ76_003714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HCS1970045.1"
                     /translation="MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKW
                     ADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIG
                     GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRR
                     ADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGY
                     VEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP
                     ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWK
                     TNIKDSSGKPLY"
BASE COUNT         1313 a         1448 c         1301 g         1296 t
ORIGIN      
        1 tttcggtaac tgcacgccca accgtttatc aataatggtt aacgcttctt cccctagctg
       61 gaactctttc gggtaaagcc gctggatatc ccacagcaac gggttgggca gcaacacgtt
      121 ttgctgaaag cgtttaatcg caaactggca atggtcagtt agcgagatat aaatactgtc
      181 ctgtaatttt cccaagcgct cctgcgctaa agagataata cgatcacagg ttgccatcac
      241 ctcaagagga atatgactta agagttcgct taatcgcccg ttcagttcat gactgctcaa
      301 ggcatactct ttttctattc cacttgagtt aattctttcg ccagcgcgtt tttgaaagcc
      361 aattcctcgc cccatgacga ctttttcccg ctgttgatca tcaataacca ccacaacatt
      421 attgttgaga attttggtga tttgcatgtt catagcaagg acctttttta taaacaaaaa
      481 aaaccgactt caccagtatt ctctggttat gtcaggtttt gcctgcgaat gcagtaacaa
      541 tccagtcatt tattaatggt ttttataacg aacatccagg ttcggaaatt aatttaattg
      601 cgtgcagaga aaatagcaat gcgctattga taaaaatatg accatgctcg cagttattaa
      661 ctttgtgtaa ttttaggaat ttataaagtt atatataaca aatcccaata attaagttat
      721 tgggatttgt ctggtgaatt atttgtcgct atcttttccc gccagcagtt tatccagctc
      781 atcaccgcct acatgacgga aatcctgccc cttcacgtag tagaagataa actcacaaat
      841 attctggcag cggtcgccaa tacgttcgat agaacgcgcg cagaacagcg cagtaagtac
      901 gctcggaatg gtacgcgaat cttccatcat gtaggtcatc agttgacgaa caataccttc
      961 gtattcctga tcgacttttt tatcttcacg ataaatacgt accgcttcgt caatgtccat
     1021 ccgcgcgaac gcgtccagca cgtcgtgcag catctggatg gtatgacggc ccagcgactc
     1081 cagacttacc agcaacggct gatgctgctg ggagaatttc tccagcgcag tacggcagat
     1141 tttgtccgcc acgtcgccaa tacgctccag ctcggcaatg gttttactga tcaccataac
     1201 cagtcgcagg tcgctcgccg tcggctgacg tttggcgata atgcgcacgc aggcttcatc
     1261 gatcgccact tccatcatgt tgacgttctt gtcgccttcg atcacgcgct tcgccagatc
     1321 gctgtcctgg ttatgcatcg cggtgattgc atcagaaagc tgctgctcca ccatgccgcc
     1381 catggtcatc acctgcgtgc ggatactttc cagttcggcg ttgaactggc cggaaatatg
     1441 tttattaaga ttgagactgt ccataacgca ctcctgaatc aaccgtaacg accggtgatg
     1501 tagtcttctg tttgtttctt cgctggcttg gtgaacagat cgtccgtgtt gctgaactca
     1561 atcaattcgc ccaggtacat aaacgccgtg tggtcggaac aacgcgcagc ctgctgcatg
     1621 ttgtgggtga cgatcaccac ggtgtaatcc tgcttcagtt cggtgatcag ctcttcaata
     1681 cgcccggtag agatagggtc gagcgccgaa cacggttcgt cgagcagcag cacttccggg
     1741 cgaatggcga taccacgcgc aatacacaga cgctgttgct gaccaccaga gagagagtaa
     1801 ccgctctggt gcaatttatc tttggtttcg ttccacaatg cggctttggt caatgcccac
     1861 tgcacgcgct cgtccatgtc ggcacgggag agcttctcaa acagacgaac gccaaaagcg
     1921 atgttgtcgt agatggacat cggaaacggc gtcggtttct ggaacaccat gcccactttc
     1981 gcacgcagca gtgcgatatc ctgagagttg gtcaggatgt tgtcgccatc aagcagaatt
     2041 tcaccttccg cacgctgctc cgggtacagt tcaaacattt tgttgaaggt acgcagcagc
     2101 gtcgatttac cgcagccgga cggcccgata aacgccgtaa cctggttttt agcgatatcc
     2161 aggttgatgt ttttcagggc atggaatttg ccgtagtaga agttcaaatt acgaacctga
     2221 attttactcg gggcagtttc aaccatactc attgcaatct tttcctcatc gtgcctgatg
     2281 cacttcgcta atcaggctta ccgtaggccg gataaggcgt tcacgccgca tccggcaaag
     2341 tgttaaccgt gtttattctt cgcaaaaaca acgcgcgcta gaatgttcag cagcagtacg
     2401 cacagggtaa taatcaatac cccggcccag gccagttgtt gccattccgc aaacgggctc
     2461 atcgcaaact taaagatcgt caccggcagg ttggcgatcg gctgcatcat gtccgtgctc
     2521 cagaactggt tggagagcgc ggtaaacagc agcggcgcgg tttcaccagc aatacgggca
     2581 atcgccagca ggataccggt catgatcccg gacaccgacg ctttcagcgt aatcgcagag
     2641 atcatcttcc acttcggtgt acccagcgca taagccgctt cacgcaggct gtccggcacc
     2701 agtttcagca tgttctcggt ggtgcggata acaatcggca cctgcaacag cgccagggca
     2761 atcacgcccg cccagccaga gaagtgctcc atctgcgcca ccacgatggt gtaaacaaac
     2821 agaccaacca caatcgacgg cgcggagagc agaatgtcgt taatgaagcg aatcacttct
     2881 gccagccagg atttacgacc atattccgcc agataaatcc ccgccataat gcccagcggc
     2941 gtaccgaata ccgtggccca caaaattaac agcccgctac ccgccagggc gttcgccaga
     3001 ccaccacctt ccgtattggg cggcggcgtc atttcagtga acagcgccag cgacataccg
     3061 tcgataccgc gagtgatggt ggacattaaa atccagatca gccagaacag gccgaaggcc
     3121 atcgtcgcca tcgagagcgt cagcgcaata cggtttttga ggcggcgacg cgcctgcatt
     3181 ttgcggcgag attcagccag cgccgcagtg gtttggattt caaccatagc cattagcgtg
     3241 ccccctcatt cttagccagg cgcataatca taaacttcga tgcggcgagg acgatgaagg
     3301 taatcacaaa caggatcagg cccagttcca tcagtgcggc aacgtgcaga ccggattccg
     3361 cttccgcaaa ttcgttcgcc aacgcagagg tgatactatt gcccggcatg tacagcgagg
     3421 cgctgtcgag ctggtaggtg ttaccgatga taaaggtcac cgccatggtt tcaccgagcg
     3481 cgcggcccag ccccagcatg atgccgccga taacaccatt tttggtgaac ggaagaacga
     3541 tacgccagat aacttcccag gtggtgcagc caataccgta ggccgactct ttcatcatca
     3601 ccggggtttg ttcgaacaca tcacgcatta ccgccgcaat gtacggaata atcatgatgg
     3661 cgaggatcac gcctgccgcg aggataccga taccaaatgc ggggccagag aacagcgcgc
     3721 caacaatcgg gatattcgac atgatattgc cgaccggctc ctgaaagtaa acggcgaaca
     3781 gcggcgcaaa gataaacagg ccccacatgc cgtaaacgat acttggaatg gctgccagca
     3841 gctcaatggc gatacccagc gggcgtttca gccagccagg cgcaagctca gtcaggaaca
     3901 gggcgatacc gaaactcacc gggacggcga tcagcagcgc gataaacgaa gtcaccaacg
     3961 taccgtagat cggcaccagc gccccgtaga tatcgttcgg tgcatcccac tctttggtcc
     4021 ataggaaagc cagaccaaat ttctgaatgc tcggccagga ggagatgatc agagagacaa
     4081 taatgccacc caacatcaat agcacaatca gcgccgccag ttttaccagc acgctgaaaa
     4141 ttatgtcgcc ctttttaccc ggtgggttaa aagcaggctt ggttgcagcc ataagttact
     4201 cttcagttaa acgcgtttac aaagtcattt tgtaatgccg gatgcggcgt aaaacaccgt
     4261 acccggcctg gagttttatt agtacagcgg cttaccgcta ctgtctttaa tattggtctt
     4321 ccacgcagcg cgaacctgtt caactacact atccggcagg ctggcgtaat ccaggtcgtt
     4381 cgcctgttta gccccggttt tgtacgccca gtcgaagaat ttcagcactt ctgtgccttg
     4441 ttctggtttc ttctgatctt tgtggatcag aatgaacgtg gtagaggtaa taggccatgc
     4501 atcttcgcct ttctggttgg tcagatcctg agcgaaggtt ttgctccagt ctgcaccttt
     4561 tgctgcatta gcgaagtttt cttcggtcgg actaaccggt ttaccatcag cggagatcag
     4621 tttggtgtac gccaggttgt tctgcttcgc gtaagcatat tcaacataac caattgcacc
     4681 cggcagacgc tgaacgaacg cggcgatacc gtcgttacct ttaccgccca aaccgatcgg
     4741 ccattttacg gtagagccag taccaacgtt gtttttccac tcttcgttca ctttcgccag
     4801 gtagctggtg aagacgaagg aagtcccgga gccatctgcg cggcgtacta cagcaatgtt
     4861 ttgtgaaggc agtttcagac ccggattcag tttggcgatg gcttcatcat cccacttctt
     4921 gattttgccc aggtagatgt cgccgagggt tttaccatcc agcaccagtt cgccagactt
     4981 cagccctgga atgttaaccg ccagcaccac gccgccaatc acggtcggga actggaacag
     5041 accttcctga gccagttttt cgtcagacag cggcgcgtca gaggcaccaa aatcaacggt
     5101 attagcgata atctgtttta cgccaccgga agaaccgata ccctggtagt taactttatt
     5161 accggtttct ttctggtaag tgtcagccca tttggcatac accggcgcag ggaaggttgc
     5221 acctgcacct gtcaggcttg cttctgcaaa cacagagaaa gcgctcatcg ataaggtcgc
     5281 ggcgacaaca gttgcgacgg tggtacgcat aactttcata atgtctcctg ggaggattca
     5341 taaagcattg tttgttgg
//
LOCUS       DAJVUN010000227         5348 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.228, whole genome shotgun sequence.
ACCESSION   DAJVUN010000227 DAJVUN010000000
VERSION     DAJVUN010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5348
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.228"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            75..1346
                     /locus_tag="OQQ76_003715"
     CDS             75..1346
                     /locus_tag="OQQ76_003715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001415629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HCS1970046.1"
                     /translation="MYDPTVQFELWFSEAKIADTSQVETSARYLGTGSQWSVSGPHIK
                     PGKDFWFYVRSVNLVGKSAFVEASGRASNDAEGYLGLFREKIGKLHLAQGLWELIDNS
                     QLADEMAEMKTTITETRNEITQTVSKTLEEQSATIQQIQRVQKDTNDDLAALYMLKVQ
                     KTKNGIPYVAGIGAGIEDTDGQPLSNILLLADRIAMINPEDGNTTPLFVAQGNQLFMN
                     DVFLKRLFAVSITSSGNPPTFSLTPEGRLTARNADISGNVNANSGTLNNVTINENCRV
                     LGKLSANQIEGDLVKTVGKAFPRDSRAPERWPSGTVTVRIYDDQPFDRQIVIPAVAFS
                     GAKHEREHTDIYSSCRLIVRKNGAEIYNRTALDNTLIYSGVIDMPAGHGHMTLEFSVS
                     AWLVNNWYPTASISDLLVVVMKKATAGISIS"
     gene            1414..2002
                     /locus_tag="OQQ76_003716"
                     /pseudo
     CDS             1414..2002
                     /locus_tag="OQQ76_003716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
     gene            2067..3302
                     /locus_tag="OQQ76_003717"
     CDS             2067..3302
                     /locus_tag="OQQ76_003717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1970047.1"
                     /translation="MTVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPD
                     EAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYEDSQPGTLNDFLGAMTEDDARPEA
                     LRRFELMVEEVVRNAEEAKKNAGEAETSARNAGISASQAEESAANADTSAGDASESAR
                     QAAESAASAKQSEEASSSSASAAAQKASESLQSATDAELSKKTAESAAGNAVRDATTA
                     TEKARESTESAQSAEQSRIAAEEAVNRIPTVVGPPGPKGEPGPAGPQGPKGDTGAPGQ
                     GTELLTTANTWTQAQTFNGGINGNLTVTGNGSFNDIQIRSDKRNKRNLVKLDNALDRL
                     EALTGYLYEIQYSADGWQTSVGLIAQDAQKALPELVTEDADVISGEKRLRLNYNGIIA
                     LLVEGLKTLRHEIKELREK"
     gene            3388..3900
                     /locus_tag="OQQ76_003718"
     CDS             3388..3900
                     /locus_tag="OQQ76_003718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970048.1"
                     /translation="MGVTSGWVGSSAKSETGEQWMGAAGTKLGLSKPFMMSQMVGRTM
                     GCKIATEYYKWKSSDKVDNWGAVGADWPLEEKSKGTITNAASCGSGRLVGAVVTLSHF
                     LTNSTPTAAVYLAGGKAGNITVNVGGATQTMIYQGVVSGFQYYWSGSVSSAFVEAMKK
                     TGVPQDLKIS"
     gene            3976..4188
                     /locus_tag="OQQ76_003719"
     CDS             3976..4188
                     /locus_tag="OQQ76_003719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001114260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS1970049.1"
                     /translation="MPEKFFRTDADNNDVPMTAASWMALSEATEQAMFAKGVEINTRQ
                     LQMKAEVEALTDLKAIRSYVVGWPAG"
     gene            complement(4330..4654)
                     /locus_tag="OQQ76_003720"
                     /pseudo
     CDS             complement(4330..4654)
                     /locus_tag="OQQ76_003720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414822.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            complement(4790..5038)
                     /locus_tag="OQQ76_003721"
     CDS             complement(4790..5038)
                     /locus_tag="OQQ76_003721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1970050.1"
                     /translation="MRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
BASE COUNT         1415 a         1169 c         1500 g         1264 t
ORIGIN      
        1 acgcgccagc aaaacccgcc accattgaac tgacgccggg gtattttcag ataacagcgg
       61 taccgcgtct tgcggtgtat gacccgacgg tacagtttga gctctggttt tcggaggcaa
      121 aaatcgcaga cacatctcag gtggaaacct ctgcccgtta tctggggacc ggcagtcagt
      181 ggagtgtatc cggcccgcac attaagcccg ggaaggattt ctggttttac gtgcgcagcg
      241 tcaacctggt ggggaaatct gcttttgtgg aggccagtgg acgggccagc aatgatgcag
      301 aagggtatct ggggctgttt cgggaaaaaa taggaaaact gcatctggct caggggctgt
      361 gggagctgat agacaacagc cagcttgcgg atgagatggc ggagatgaag accaccatca
      421 ccgaaacccg caatgaaatc acacagacgg tcagtaaaac gctggaggag cagagcgcca
      481 ccatacagca gatacagcgc gtgcagaagg acacaaatga tgaccttgct gcactttaca
      541 tgctgaaggt acagaaaaca aaaaatggca taccctatgt tgccggtatt ggagcgggga
      601 ttgaggatac tgatggccag cccctgagca acatactgct gctggctgac cgtattgcga
      661 tgattaaccc ggaggacggc aacaccacgc cgttatttgt ggcgcagggg aatcagttgt
      721 tcatgaacga tgtgttcctg aagcggctgt ttgcggtgag tatcacctcg tccggcaatc
      781 ccccgacgtt ttccctgacg ccggagggca ggctgaccgc aagaaatgct gatatcagcg
      841 gtaacgtgaa tgcgaactcc gggacgctca acaacgtcac gattaacgag aactgccggg
      901 ttctgggaaa actgtccgcg aaccagattg aaggcgatct cgttaaaaca gtgggtaagg
      961 cttttccgcg ggactcccgg gcaccggagc ggtggccatc agggaccgtt accgtcagga
     1021 tttatgacga tcagcctttt gaccggcaaa ttgttattcc ggcggtggca ttcagcggcg
     1081 ctaagcatga gagagagcat actgatattt actcctcatg ccgtctgata gtgcggaaaa
     1141 acggtgctga aatttataac cgtaccgcgc tggataatac gctgatttac agtggcgtta
     1201 ttgatatgcc tgccggtcac ggtcacatga cgctggagtt ttcggtatca gcatggctgg
     1261 tgaataactg gtatcccaca gcaagtatca gcgatttgct ggttgtggtg atgaagaaag
     1321 ccaccgcagg catcagtatc agctgaattt tataacccat atacgggcgc cagaaatggc
     1381 gcctttttta ttgcagaaaa gcgagaggta attatgcgta aagtttgtgc agccattttg
     1441 tccgcagcca tctgtctgtc cgtatccggt gcgcctgcat gggcgtctga acatcagtcc
     1501 acactgagcg cggggtatct tcatgcccgt acgaacgctc ccggcagcga taatctgaac
     1561 gggattaacg tgaaataccg ttatgagttt acggacgcgc tggggctgat tacgtccttc
     1621 agttatgcca atgctgaaga tgagaaaaaa acgcactaca gcgatacccg ctggcatgaa
     1681 gattccgttc gtaaccgctg gttcagcgta atggcggggc cgtgaatgaa tggttcagcg
     1741 cgtatgcgat ggcgggtgtg gcttacagcc gtgtgtcgac tttctccggg gattatctcc
     1801 gcgtaactga caacaagggg aaaacgcacg acgtgctgac cggaagtgat gacggtcgcc
     1861 acagcaacac gtctctggcg tgggggctgg cgtgcagttt aacccgaccg aatccgtggc
     1921 cattgatatt gcttatgaag gttccggtag tggcgactgg cgcactgacg gtttcatcgt
     1981 gggtgtcggc tataaattct gattagccag gtaacacagt gtcatgacag cccgccggtt
     2041 caggcgggct tttttgtggg gtgaatatga cagtaaagat ttctggtgta ctgaaagacg
     2101 gcacaggaaa accggtacag aactgcacaa tccagctgaa agcaaaacgt aacagtacca
     2161 cggtggtggt gaacacgctg gcctcagaaa atccggatga agccgggcgt tacagtatgg
     2221 acgttgagta tggtcagtac agcgttattc tgttggtgga gggattcccg ccgtcacatg
     2281 ccgggactat caccgtgtat gaagattctc aacccggtac gctgaatgat tttctcggtg
     2341 ccatgacgga ggatgatgcc cgtccggagg cactgcgtcg ctttgaactg atggtggaag
     2401 aggtggtgcg taacgcagag gaggcgaaga agaatgccgg agaggcggag acgtcagcga
     2461 ggaatgccgg catatcagcc agtcaggcag aagagagcgc tgcaaatgct gacacttcag
     2521 caggggatgc atcggagtca gcccggcagg cggcagaaag tgcagcctca gcaaagcagt
     2581 cagaggaggc gtcctcgtcc tcggcctctg cggccgctca aaaagccagt gagtcattac
     2641 aaagtgcaac agatgctgag ttgtcaaaaa agacggcaga aagtgcagcc ggtaatgcag
     2701 tcagggatgc aacgaccgca acagaaaaag cccgggagtc aacagaaagc gcacagtcag
     2761 cggaacaaag caggatagcg gcggaagagg ccgtaaaccg aatccccacc gtggtgggac
     2821 ctcccgggcc aaagggggaa ccggggcccg cgggtcctca ggggccgaag ggagacacag
     2881 gagcccccgg gcaaggaaca gaactgctta ctactgccaa tacatggact caggcacaaa
     2941 cttttaatgg tggtattaat ggcaatttga cggtgaccgg aaacggctca tttaacgata
     3001 ttcagatccg ttcggataaa cgcaacaagc gaaatctggt aaaactggat aatgcgttag
     3061 atcgtctgga ggcacttact ggttatcttt acgagataca gtactctgcc gacggttggc
     3121 aaacgtcggt tggtttaatt gctcaggatg cacaaaaagc attgcctgaa ctggtaactg
     3181 aagacgcaga cgttatatct ggtgaaaaac gtctgcgtct taactacaac ggcataattg
     3241 cattgttagt cgagggcttg aaaacacttc gtcatgagat taaagaactc cgggagaagt
     3301 aaacgacagc tgttgtagtt tctggtttct actgaattta aattgtgggg tgacactcac
     3361 cccacgcatt cagaaggggg agatgagatg ggggtaacat cgggatgggt aggctcttcg
     3421 gctaagagcg aaacaggtga gcagtggatg ggagccgccg gaaccaaact gggactgagt
     3481 aaacctttta tgatgagcca aatggttggg cgaactatgg gctgtaaaat tgcaactgag
     3541 tactataaat ggaaatcctc tgacaaggtt gataactggg gcgcagttgg cgctgactgg
     3601 cctttagaag aaaaaagtaa aggtacaatt acaaacgccg caagctgcgg atcagggagg
     3661 ctggtagggg ctgtcgttac actttctcac tttttgacga actctacacc gacagctgct
     3721 gtttatttag ccggtggtaa agcaggtaat atcaccgtaa acgtaggtgg tgctacacaa
     3781 accatgattt atcagggcgt tgttagtggg ttccagtatt actggtcagg ttctgttagt
     3841 tccgctttcg tggaggcaat gaaaaagacg ggagtacccc aggatctaaa aattagttaa
     3901 atggtaaata aataatttta aaaacttcac gttctacata ccggagacgc cggatatata
     3961 ggatattgtt ttaagttgcc agagaaattt ttccggacgg atgctgataa taatgatgtg
     4021 ccaatgacgg cagcatcatg gatggcactg agtgaagcga cagagcaggc gatgtttgcg
     4081 aagggagtgg agattaatac acggcagttg cagatgaaag ccgaggttga ggcgctgaca
     4141 gacctgaagg cgatccgcag ttatgttgtc ggatggcctg ctggctgaat aaaaaaacgg
     4201 gaccacgacc agtcccggaa ccatgagttt tagggtatta gtttgttatc atagttagcg
     4261 tgctaagtat gccatgtcag gttgattagt gaagtgatgt tgttcgcatt tttgcactgc
     4321 ggagaatatt cagatttttg gaaatccata tttttcccgt gcgcgattac atgcttcatt
     4381 tacgatgcta ttttcgccgg acattgcgaa ttccctgcat gtggacggtt tttgtaaaca
     4441 gagcaatatg cgttttctcc gggggggccg gcaagagcgc cacatcgggg atttttctga
     4501 ttggtgccgc gcatacagcg atgaaaagga gatatttgct cagtgagact gaccgaaacc
     4561 tttccgccag catcgtcagc ttctgcccag taaaaagaga cgcggaaaat gcacaacagg
     4621 caccacacgt catgcatgga ttcagattgc tcataattca ccagtacagc tataaatcgt
     4681 aaagagaaca gcggtacatc gtatgtaaga acgtaccgcg gctggctggt gaacttccga
     4741 tagtgcgagt attgaatgat ttccagccgt tacagatttt acgtgctaat tagtgaacaa
     4801 accactcgtc agcagactcc caggtatctt tcagagtttc ctgaacaaaa gttttagctg
     4861 aatctttatc ggcggtgcgc gtaacagaaa ggccatcgtt gctggtagct tttacgatca
     4921 cctctacatc gtcataacgt ttactgatgc gtcgggttaa ttcttccttt aacgcatcca
     4981 cagcaccggt tggcatttta gtcatttttt ctttggctat gcagatttca atacgcataa
     5041 aagtccctct acactgtgtt tgtatacagt atcattttta actgtatgga taaacagtat
     5101 caagggtgaa ggaaagtgat tttttggggc atgcatgggg caaaaatatt tgttgtgggg
     5161 cattttgggg catgattggg acactttgtt acatatgaac tttgccgatt tttatatgac
     5221 atggaaatac aacgctttga ttcttctaaa taaaaaacat gctcttgggc gttctttagt
     5281 gatttttaaa aattccgtat cacgcagtta aagtggcggg catactcttc aaggctggtg
     5341 atccccaa
//
LOCUS       DAJVUN010000228         5338 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.229, whole genome shotgun sequence.
ACCESSION   DAJVUN010000228 DAJVUN010000000
VERSION     DAJVUN010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5338
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.229"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(890..1831)
                     /gene="fabY"
                     /locus_tag="OQQ76_003722"
                     /gene_synonym="yiiD"
     CDS             complement(890..1831)
                     /gene="fabY"
                     /locus_tag="OQQ76_003722"
                     /gene_synonym="yiiD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid biosynthesis protein FabY"
                     /protein_id="HCS1970051.1"
                     /translation="MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAH
                     HQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGV
                     KRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQ
                     LQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNLHHTLFAGSLFSLATLTGWG
                     LIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQM
                     QVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE"
     gene            complement(1876..2313)
                     /gene="dtd"
                     /locus_tag="OQQ76_003723"
     CDS             complement(1876..2313)
                     /gene="dtd"
                     /locus_tag="OQQ76_003723"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000560980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HCS1970052.1"
                     /translation="MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANR
                     LCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRA
                     EALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV"
     gene            complement(2310..3182)
                     /locus_tag="OQQ76_003724"
     CDS             complement(2310..3182)
                     /locus_tag="OQQ76_003724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HCS1970053.1"
                     /translation="MLKTIQDKARHRTRPLWAWLKLLWQRIDEDNMTTLAGNLAYVSL
                     LSLVPLVAVVFALFAAFPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMT
                     AVGACGLIVTALLLMYSIDSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAI
                     SSYLLSLRWASDLNTVIDNVLRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAA
                     LLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYR
                     KLKQAAEQEEDDEP"
     gene            complement(3176..3775)
                     /gene="yihX"
                     /locus_tag="OQQ76_003725"
     CDS             complement(3176..3775)
                     /gene="yihX"
                     /locus_tag="OQQ76_003725"
                     /EC_number="3.1.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphatase"
                     /protein_id="HCS1970054.1"
                     /translation="MLYIFDLGNVIVDIDFNRVLGAWSDLTRVPLATLKKSFHMGEAF
                     HQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHR
                     VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSD
                     TVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC"
     gene            complement(3916..4803)
                     /locus_tag="OQQ76_003726"
     CDS             complement(3916..4803)
                     /locus_tag="OQQ76_003726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HCS1970055.1"
                     /translation="MKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHD
                     GARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNAMLNAGGQCYSLPANKP
                     PHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHS
                     YADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQAGSWD
                     DCFGFYNGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPEL
                     VTPDRPLVIETRWQFTPES"
     gene            complement(4793..>5338)
                     /locus_tag="OQQ76_003727"
     CDS             complement(4793..>5338)
                     /locus_tag="OQQ76_003727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1970056.1"
                     /translation="FGIVYISSQLALSRDIPLTGMLIASAIGIFSCPLVGWLSDRIGQ
                     KSLYLSGAGFCVLFAFPFFLLLDSKSTLIIWCSMILGYNLGPTMMFAVQPTLFTRMFG
                     TKVRYTGLSFAYQFSAILGGLSPLIASSLLALGGGKPWYVALFLFAVSVLSFVCVWLI
                     EPTDEQETASYRYIREQSHEN"
BASE COUNT         1446 a         1345 c         1250 g         1297 t
ORIGIN      
        1 gataaatgaa gaaaaaccgt attcatcgcc attaccacca ccttacctat attactcatt
       61 aatgtatgtg cgaaaattac gccggaaaat cattaaaaaa aaagcggatt tttgcatgtt
      121 gttttgtttt tgcgaggcgt tttccagaaa taataagagt gttgcagttg tttcatttat
      181 tactcaaaaa tggtttagtt atcgcccagg atgaattatg ggtgctatga atatattata
      241 ttcagagata tttatttgca taatctgaat ggtgtagccg aaaaacgtca gcatcctaac
      301 agcaccagga tttaaggtga aattaatctt tcatcacaga ccggtcagta ctgccaccaa
      361 ccggtcttta cttgctcatc gttataattt tgttggtaac agttcgggaa cgttgttttt
      421 ctaaattaac aacagaataa ctttcttgtt taatgagatt aatattggca accattatag
      481 cctccttccc acggtttaag agcaaacata caacataatg attcataaca tacagagcag
      541 taaatgaatg atactgacaa tgatgccagc ccattatctt tgcataatgt ttgtgagcta
      601 tagattttaa aaatatttat gaggaaagta tggcaccaga ggaggttttg actatcaaaa
      661 atcgctcaaa cctgaactaa gatgatgagt taagcattat ctgcgataat tgccactcag
      721 ctctacaaat aatatttaaa tgctcctgaa cagtgatgta gcaagacacg tatggtgcca
      781 acgaagaata aaaatttata gagttcttat tcaatattac cggcatagac agggaatgat
      841 gtaaatgacc ggaataaatg agagaggcag caccgcccct ctccataagc tactcttctt
      901 cgttcccgcc ctcttcatac gggccaaatg gcttcgcggg cagaacgata tacgtgcctt
      961 caaacactgc acccggcgtc tcgtcgccaa agatttcaac ttgcatctgc acccgtgctt
     1021 ttcgtccgcg cgccagacgg tcgagatcgc cgcttaaggc accaaggtcg gctaccgcat
     1081 gaggtttacc gctaatcggc ttgctgtagc ggatatgcgc atcggccaga ataatcgttc
     1141 cgccgaggtg gcgttcgcgc agcatcagcc agataagccc ccaaccggtg agcgttgcca
     1201 gcgagaataa actcccggca aacagcgtat ggtgcagatt ctgattaccg gtttccggca
     1261 tggtggtgat aaatttttgc ccggtatatt gctgaatgcg cacgcccatt ttttcactaa
     1321 gcgggatgtg ttcgtaccac gcctgttgca gctgcgcgca ccagtcgccg cgatgcaaaa
     1381 tatcatccag agtggcaaca ggtttaatca tcaaaaaatg gcgaatcggc gtggtggttg
     1441 gtgtggtgat ttctccctga ttaacaaacc ccagcttggc gaaaaactcc accgcgtctt
     1501 cacgggcgct acaggtcacg cgcttaacgc cttcctgacg cgccaccgac tccagggtca
     1561 tcgccatcaa cgtccccagc cctttgtcct gcacgtcggg atgaacggcc ataaagcgaa
     1621 tggacgcttc attgtcggca ttaatataca gtcggcctac cgccaccaga ttcccctgct
     1681 cgtcgacgac catctgatga tgcgccatcg catcccacgc gtcgcgttcc gaaccttttg
     1741 gttgatgcag gggcttacgc aacatttccc agcgaaactg atagtaacgc tctaactctt
     1801 cttctgtttg tggaacccga aggtgataca tagcgatact ctctcttgtt tcccgtgaca
     1861 accctggaag ctggctcata cctgcaacca gaatgtcacg gggccatcat tgaccagcga
     1921 tacctgcata tcggcagcga agcgtcctgt ttgcgtgttc atctcttgct ggcggcagcg
     1981 ttcgacgaaa tagtcatata acgcctctgc gcgatccggt gatgcgcctt tggagaaact
     2041 tgggcgcatc ccccgttcgg tatctgcggc gagggtaaac tgggaaacca ccagtacact
     2101 gccgcccgcc tgttgcacgt tgagattcat cttgccttcg gcatcgctaa agatgcggta
     2161 gccgagcaca cgctcgcaca gacggtttgc tttctgttcg tcgtcatcct tttcgacacc
     2221 caataacacc aaaagtcccg cgccaatttc gcccgtcact tctccctcca cggtgacgct
     2281 ggcacgggtt acgcgttgaa ttaatgcaat catggttcgt cgtcttcttc ttgttcagct
     2341 gcttgtttta gtttgcggta ttccccgaga gtgacagtaa tttccgcgcc aagcaagacg
     2401 atacaccatg tccagtagac ccaaacaaag agaatgggga tcaccgccag cacaccgtaa
     2461 atgagctgat atgacgggaa catggtgata taaagcgcga aacctttctt tcctgcttcg
     2521 aacaggagtg cggcgacaaa cgcgccgaca atcgcgtcgc ggttaggtac gcggatggta
     2581 ggaacaatgc tgtacagcaa ccagaaggag atccacgaca acagcaacgg aaaaatacgc
     2641 agcacgttgt cgatgacagt attgagatcg ctcgcccagc gcagggagag caaataggaa
     2701 ctgatcgcca gactggcccc tgccagcagc ggccccagcg ttaaaatcat ccagtacacg
     2761 gcgaacgagt aaatttttgg tcgcgctcgt ttactgcgcc agatggtatt caacgcgcta
     2821 tcgatggagt acatcaacaa taacgcggtg acgatcagcc cgcacgcccc aacggcggtc
     2881 atcttgttgg aattggcaac aaattgttcg atataccgct gaataacatc gccagtagca
     2941 ggcagaaagt tggcaaaaat aaagtgacgt aactgaatgc tgacgtcgga aaacatggga
     3001 aaagcggcga aaagcgcaaa aacaacggca accagcggca ctaatgagag caacgacaca
     3061 taggcaaggt tacctgccag ggttgtcatg ttgtcctcat caatacgttg ccagagtagt
     3121 tttagccagg cccatagtgg acgggtacgg tgcctggctt tgtcctgaat ggtttttagc
     3181 ataacacctt cgcgaaatag tccgggatgg tggttttatc tttcaccaga atactggtaa
     3241 tgcccagctg attggctcct tctatattat cggcgttatc gtcgaaaaag accgtatcgc
     3301 tgggtgaaaa accttccgcc tgcaaaacat gctggtaaat tcgtgcttca ggtttgcgca
     3361 tccccagatc ttgcgacaga tagatatggt cagcagcatc acgaatttcc gggtattctt
     3421 ccggccagaa ggtggtatgc aggcggttgg tattggaaag caccaccacg cgatgcccct
     3481 gctcacgcag tttatgcatg atggcgatca cttccgggcg cagcgcaaca aacaccgcct
     3541 gccagccgtg agagaactgc tcgtagctta gcggtagagc catctcatga cacagcgcct
     3601 ctgcgaacgc ttcgtcgcta atttccccac gctcatgctg atgaaacgcc tcccccatat
     3661 gaaaactctt cttaagcgta gccagtggaa cacgcgttaa atcgctccag gctcccagca
     3721 cacggttaaa gtcgatatcg acaatcacat tacctaaatc aaagatatag agcatttttg
     3781 cctcctttcg cgccacaaga aattaactgt agcgggaaag gatgggtttg gctatgtggc
     3841 aataagggta atcttgtgat gctgattgcg aaaaagcaga gtaatttcac tggctttttc
     3901 gcaatagatg aatggttaag attcaggtgt aaattgccaa cgagtttcga tgaccagcgg
     3961 cctatctggt gtcaccaatt ccggcgttag atttattgcg ttaggtgcct gagtcagcgg
     4021 gttaatacag gtggcatcgg gctgtttatc aaataccacc agactgtttg cagaagagat
     4081 catggtcatc gcgagtttac caggccacag taacttaacc ttcaccccgt tataaaaacc
     4141 aaaacagtca tcccaggaac cggcttgagg agagatacga tttccagttg gcagttcatc
     4201 actacccgct tcttcttgcc agtccgcatc aaaaagcacc tgcaacgatt ctgtattttg
     4261 cggagtcagc tttttcgcaa accacggatg ccagccagcg gaggccggga atgtatcggc
     4321 atatgaatgg acttccagtt gcaaaaccag cgcatcgttc tccagcaaaa aagtctgaat
     4381 cacttcccct tgccagggcc acggtgaagc caggggcata cgtaaagtca gggaatctgc
     4441 tgttttgtcg atgatttccc acgttgagta acaagccata ccatgcaacg catgtggtgg
     4501 tttattggcg ggtaaagaat aacattgccc accagcattc agcatcgcat tccccagtcg
     4561 ccctgcccac ggcaccattg ggaaacagcc atactgaaaa gctctgcgct gcggctgcca
     4621 ttggcgtaat acttcagaac caaatgcctt taacgaggtt atcctggcac catcatgcgg
     4681 ataaatctgc aggtgaatat tgcctttttc cagcgtcact aactctccta caggcccagg
     4741 ccatggcgcg tcaaacgcct gttgtagcgc caggtaatgc tcgttttttc gttcagtttt
     4801 catgagattg ttccctgatg tagcggtaag aagcggtttc ttgttcatcg gtcggctcaa
     4861 tcagccagac gcaaacaaag gaaagaactg agacagcaaa taaaaacaga gcgacatacc
     4921 acggttttcc tccccctagc gccagcaaac ttgaggcgat aagggggctt agtccgccaa
     4981 gaatcgcgga aaattgataa gcaaaagaaa ggccggtata tcgtactttg gtaccgaaca
     5041 tgcgggtgaa aagtgttggc tgcacggcaa acatcatcgt cggacctaag ttgtagccga
     5101 ggatcatact gcaccagatg atgagcgtac ttttgctatc cagtaataag aagaaaggaa
     5161 acgcgaacag gacacaaaat cctgctcccg acaaatacag acttttttga cctatacgat
     5221 ctgataacca tccaaccaat ggacaactga aaataccgat cgccgaggca atcaacatac
     5281 ccgtcagggg aatatctcgc gacaatgcta attggctgga aatatagaca ataccaaa
//
LOCUS       DAJVUN010000229         5295 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.230, whole genome shotgun sequence.
ACCESSION   DAJVUN010000229 DAJVUN010000000
VERSION     DAJVUN010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5295
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.230"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            60..710
                     /gene="inaA"
                     /locus_tag="OQQ76_003728"
                     /pseudo
     CDS             60..710
                     /gene="inaA"
                     /locus_tag="OQQ76_003728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416740.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA"
     gene            complement(764..1018)
                     /gene="yfaE"
                     /locus_tag="OQQ76_003729"
     CDS             complement(764..1018)
                     /gene="yfaE"
                     /locus_tag="OQQ76_003729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like diferric-tyrosyl radical
                     cofactor maintenance protein YfaE"
                     /protein_id="HCS1970057.1"
                     /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS
                     CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM"
     gene            complement(1018..2148)
                     /gene="nrdB"
                     /locus_tag="OQQ76_003730"
     CDS             complement(1018..2148)
                     /gene="nrdB"
                     /locus_tag="OQQ76_003730"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HCS1970058.1"
                     /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ
                     LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI
                     PELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE
                     LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFA
                     FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDL
                     FVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP
                     WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL"
     gene            complement(2295..4580)
                     /gene="nrdA"
                     /locus_tag="OQQ76_003731"
     CDS             complement(2295..4580)
                     /gene="nrdA"
                     /locus_tag="OQQ76_003731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HCS1970059.1"
                     /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR
                     SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL
                     YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR
                     VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP
                     TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD
                     YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR
                     VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLN
                     DVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAM
                     GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP
                     WFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET
                     SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV
                     GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED
                     AQDDLVPSIQDDGCESGACKI"
BASE COUNT         1302 a         1257 c         1378 g         1358 t
ORIGIN      
        1 ttttcctcag gtaaccacct atagtcattg tcgttaataa aaacgacagg cgatagggta
       61 tggcagtttc agcaaagtac gacgaattta atcactggtg ggcaacagag ggcgactggg
      121 ttgaagagcc taactatcgc cgtaatggta tgagcggggt gcaatgcgtc gagcgcaacg
      181 gcaaaaagct gtatgtaaag cgcatgacgc atcatctgtt tcattctgta cgttatccgt
      241 tcggccgacc aacgattgtc cgtgaggttg cggtaattaa ataactggaa cgggccggtg
      301 tcatcgtgcc taagatcgtt tttggtgaag cggtgaaaat tgagggtgaa tggcgagcgt
      361 tgctggtgac tgaagatatg gcggggttca tcagcattgc tgactggtat gcccagcatg
      421 cagtatcgcc ttattctgac gaagtacggc aagccatgtt gaaagcagtg gcgctggcgt
      481 ttaagaaaat gcatagcatt aatcgtcagc atggctgttg ttatgttcgc catatctatg
      541 tgaaaacaga aggtaaggca gaagctggtt ttcttgacct ggagaaaagt cgtcgccgct
      601 tgcgtcgcga taaagcgatt aatcatgact tccgtcagct ggaaaaatat ctggagccaa
      661 tccccaaagc ggactgggag caggtgaaag cgtattacta cgccatgtaa tcgttgtagg
      721 ccagataaga cgcataagcg ttgtatctgg cactacaacc aattcacatc tcgatttcaa
      781 tatcgccttt tgcccggcaa caacagggca aaatttcccc cggctgaata aaggctaacg
      841 gttcggcaat ccagtcaact tgacctgcaa ccaggcgtgt gcgacaggag ccgcagtaac
      901 cttcgcgaca ctggtactca accgccacat tgtgggattc cagcgctgcc agaagggaag
      961 ggtgttcatc ctggcacagc agttgtgtgc cagtgatgcg cagggtaacg cgggccatca
     1021 gagctggaag ttactcaaat cgtcggtgtc cacttccgag tcaatctgcc cgaccagata
     1081 agaactgact tccacttcct gcggagcaac ctgcacgtta tcagacacca gccaagtgtt
     1141 gatccacggg atcgggttgg agcgcgtctg gaacggcaga tccaaaccga ctgcctgcat
     1201 acggatattg gtgatgtatt caacgtactg gcagagaatg tctttattca gaccaatcat
     1261 cgaaccgtcg cggaacagat aatccgccca gtctttctcc tgttgagctg cctgaacaaa
     1321 caggtcatag cactcctgct tacactcttc ggcaatttcc gccatctcag gatcgtccgc
     1381 gccgctgcgc agcagattca gcatatgctg ggtgccggtc aggtgcaggg cttcgtcgcg
     1441 ggcaatcagg cgaataattt tggcgttgcc ttccatcaat tcgcgttctg caaaggcaaa
     1501 ggaacaagca aagctgacgt agaagcggat cgcttccagc gcgttaacgc tcatcaggca
     1561 aagatacagt tttttcttca gctcgcgcag gctaacggtt acggttttac cgttaacggt
     1621 gtgggtgcct tcgcccagaa ggtgccagta gctggtcatt tcgatcagtt catcgtaata
     1681 gctggagatc ccttccgcac gtttctggat ctgctcgttg gtgacgatat cgtcaaacac
     1741 aacagacgga tcgttaacga tattacgaat gatatgagta taggaacggg aatgaatcgt
     1801 ttctgagaac gcccaggttt cgacccaggt ttccagttcc ggaatagaaa taagcggcaa
     1861 tagcgccacg ttcggactac gaccctgaat ggaatccagc agcgtctgat atttcaggtt
     1921 gctgataaaa atgtgttttt cgtgctccgg cagcgcctgg taatcgatac ggtcgcggga
     1981 gacgtcaact tcttccggac gccagaagaa agagagctgc ttttcgatca gcttttcgaa
     2041 gatgtcatat ttttgctgat cgtagcgggc cacgttgacc ggctgaccaa agaacatcgg
     2101 ttctttgagc tgatcatttt tcgtctgtga aaaggtggta tatgccatga gtgtgtcctg
     2161 ttgggagttt aatgccggat aaggcatttt acgccgcatc ctgtgcctga tgcgacgctg
     2221 gcgcgtctta tcaggcctac aaatccgagc cgtaggccgg ataaggcgtt cacgctgcat
     2281 ccggcatctc aatatcagat cttacatgcg ccgctttcgc agccatcgtc ctggattgac
     2341 ggtaccagat cgtcctgcgc gtcttcagcg ccgtcacggg tgttctgata atacagcgtt
     2401 ttgaccccga atttgtaggc ggtgagcagg tctttcagca actgctgcat cggcactttt
     2461 cctgacggga aacgtgacgg atcgtagttg gtgttagcag agatcgactg atcgataaat
     2521 ttctgcatga tacctaccag ttgcaggtag ccatcgttac ccggcatttc ccacagcagc
     2581 tcataggcgt cgtgcaggtg ctcgtagtcc ggcaccacct ggcgcaaaat accgtctttc
     2641 gacgctttga tgctgacgta accgcgcggc ggttcaatac cgttagtggc gttagagatc
     2701 tgcgaagagg tctcggacgg catcagggca gaaagcgtgg agttacgcag gccgtgcgtt
     2761 ttgattgatt cacgcaatgc ttcccagtcg taatgcagcg gctcattagc gatggcatcc
     2821 agatctttct tataggtatc gatcggcagg atccctttcg cgtaagtggt ttcgttaaac
     2881 cacgggcacg cgccttgctc tttagccagc tcattagacg ctttcagcag gtaatactga
     2941 atcgcttcga aggttttatg cgtcaggttg ttggcgctgc cgtcggagta gcgtttaccg
     3001 tgcttcgcca ggtagtaagc gaagttgatc acaccaatac ccagcgtacg acgacccatc
     3061 gctccacgtt tggcggccgg gatcgggtaa tcctgataat ccagcagcgc gtcaagtgca
     3121 cgaaccgcca gaattgccag ctcttccagt tcatccaggt tattaattgc gcccaagttg
     3181 aaagcagaca gcgtacacag cgcgatttca ccgttctcgt cgttgacgtc gttcagcggt
     3241 ttggtcggca gggctatctc caggcacagg ttagactgac gcactggcgc gatggccgga
     3301 tcaaacgggc tatgggtatt acagtggtca acgttctgaa tatagatacg accggtagac
     3361 gcacgttcct gcatcatcag cgagaacagc tcaacggctt tcacacgctg cttgcggatg
     3421 ctgtcgtctt tctcatattt ggtatacaga cgttcaaact cttcctgatc ggcgaagaac
     3481 gcgtcgtaca gccccggtac gtcggacggg ctgaacaggg tgatatcttc acctttcagc
     3541 agacgggtat acatcagttt gttgatttgt accccgtagt ccatatgacg cacgcggttg
     3601 ccttccacac cacggttgtt tttcaacacc agcaggcttt ccacttccag atgccacatc
     3661 gggtagaaca gcgttgccgc accgccgcgc acaccgccct gagagcagga tttcaccgct
     3721 gtctggaaat gtttgtagaa cggaatgcag ccggtatgga acgcttcacc accgcgaatc
     3781 gggctaccca gcgcacgaat acgcccggcg ttgatgccga tcccggcacg ctgggaaacg
     3841 tatttaacaa tcgcgctgga ggtggcgttg atggaatcca ggctgtcacc gcactcgatc
     3901 agtacgcagg agctgaactg acgagtcggg gtacgcacgc cggacatgat tggcgtcggc
     3961 agcgaaattt taaatgtgga aaccgcgtcg taaaaacgct tcacatattg caggcgcgtt
     4021 tcacgcgggt agttcgagaa caggcacgcg gcaaccagaa tataaaggaa ctgggcgctc
     4081 tcatagattt cgccggtcac gcggttctgt accagatatt tgccttccag ctgcttaacg
     4141 gcagcataag agaaggtcat atcacggtcg tgatcgataa acgtgtccat ctgcttgaac
     4201 tcttcttccg tgtagtcttc cagcagatga ttatcgtatt tgcccatctc gaccattttc
     4261 accacgtggt cgtacagcgc aggcggctca aactggccgt aggctttttt acgcaggtgg
     4321 aagatcgcca ggcgcgcggc gagatactga taatccggcg catcacggga gatcaggtct
     4381 gcggcagcct tgataatggt ttcgtggatg tcagaggtct tgataccgtc ataaaactga
     4441 atgtgggagc gcagctcgac ctgggaaatc gaaacgttat gcagtccttc tgccgcccaa
     4501 tccagaacgc gatggatttt gtcgagattg atgcgctctg tgctaccgtc gcgctttgtc
     4561 accagcagat tctgattcat gtatgtcgta cctgtttttg gaattctttc cgcaatagtt
     4621 tcatgcagac tacctgtagt acgggaagct gcttagaaca ctatatatag ggggtatgtt
     4681 tgggattcac tgcaagatag tgtgaaaatg gccctcttgc aagtgcataa ctttgtggat
     4741 aactcaggaa ggaaaaagtg gctttcgcgc accttaggtc agacaaggtg tccgggaaag
     4801 tcaatgggaa gagaaaaatt tgttaaaaat aactgttcgg cgatttcttg aacggcagaa
     4861 taggttggat aaattgatat agatggttta ttaatctttt tgctaatgat tgcaaaaatt
     4921 gatctaagca cgagtcatca cataatctga tgtatcagtt gtggtcaata tataagcgaa
     4981 tgtaagcgat tgttgatgtc gaaatggttg ttttctattc ggttattgtt aaatgcgaag
     5041 ccattttgtt aatttacctt atattataaa aaaattattc attactttaa tttagtttaa
     5101 atataactgg tatcccttaa ggttattaac ttgaattatg acgcactgat attattcatc
     5161 aaataataac aaaatagcca ttgcatcggg ttggacaatt tacaaaagaa agataaccca
     5221 tattgtataa tgcgtttaaa tatgccgtct tatataaaat gatggtcaga ttaatatgcg
     5281 gattatcttt ctacg
//
LOCUS       DAJVUN010000230         5268 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.231, whole genome shotgun sequence.
ACCESSION   DAJVUN010000230 DAJVUN010000000
VERSION     DAJVUN010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5268
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.231"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            244..2241
                     /gene="betT"
                     /locus_tag="OQQ76_003732"
     CDS             244..2241
                     /gene="betT"
                     /locus_tag="OQQ76_003732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004119118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline BCCT transporter BetT"
                     /protein_id="HCS1970060.1"
                     /translation="MSENDTTPKKSTSQVNKAVFFTSALLIFLLVAFAAVFPDVADKN
                     FKLLQQQIFTNASWFYILAVALILLSVTFLGLSRYGDIKLGPDHAQPDFSYHSWFAML
                     FSAGMGIGLMFFGVAEPVMHYLSPPVGTPETVAAAKEAMRLTFFHWGLHAWAIYAIVA
                     LILAFFSYRHGLPLTLRSALYPIIGDRIYGPIGHAVDIFAVIGTVFGVATSLGYGVLQ
                     VNAGLNHLFGVPINETVQVILIVVITGLATISVVSGLDKGIRILSELNLGLAVLLLAL
                     VLCLGPTVLLLKSFVENTGGYLSELVSKTFNLYAYEPKSSNWLGGWTLLYWGWWLSWS
                     PFVGMFIARVSRGRTIREFVTGVLFVPAGFTLMWMTVFGNSAIYLIMNQGATDLANTV
                     QQDVALALFNFLEHFPFSSVLSFIAMAMVIVFFVTSADSGAMVVDTLASGGVANTPVW
                     QRIFWALLMGVVAIALLIAGGLSALQTVTIASALPFSVILLISIYGLLKALRRDLTKR
                     ESLSMATIAPTAARNPIPWQRRLRNIAYLPKRSLVKRFMDDIIQPAMTLVQEELNKQG
                     TISHISDAAEDRIRLEVDLGNELNYIYEVRLRGYNSPTFALAALDNDEQQSEQHRYYR
                     AEVYLKEGGQNYDVMGWNQEQLINDILDQYEKHLHFLHLVR"
     gene            2305..3582
                     /locus_tag="OQQ76_003733"
     CDS             2305..3582
                     /locus_tag="OQQ76_003733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2254 domain-containing protein"
                     /protein_id="HCS1970061.1"
                     /translation="MISRWKWMLKQTFKKLWFRATLFAIVAIITALLSILFKSMIPES
                     VSVKVGAEAVDNILNILASSMLAVTTFSLSIMVTAYGSATTNVTPRATRLVVEDVTTQ
                     NVLATFIGSFLFSLVGIIALNMGAYGERGRVILFIVTLVVIALILITLLRWIQHLTSL
                     GRVGETTAKVEQAAIETFIARARNPCLGGYPWLENNEQPKGTVAVYPKKIGYVEYVDM
                     VKLSKLLTNDPRHVYLVAQPGSFIHPSTPVLYLSQGQESSISTDLLETIIVSDVRSFA
                     QDPRFCLSVMAEIACRALSPAVNDPGTAIDVIGRGVRILSAYAQNKSDEIEVKYPSVH
                     VAPLQNNDLLEDFFSPVARDGASMREIQIRVLKGLSMLSKGWPGIFAEAAQTLAFETL
                     EHATRADHIDSDRYLIKSIYYNLFSGEDSNKKP"
     gene            4199..>5268
                     /locus_tag="OQQ76_003734"
     CDS             4199..>5268
                     /locus_tag="OQQ76_003734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004714530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970062.1"
                     /translation="MSSELIAKPGTGVLSTDTTKFEGYLSYLGLPTENIIASLPERQI
                     IEKNLPTFIDSLPAEVKRDARYLSKFVAGAAIGLFDASLNYVWNEVVLNLREKVVVYG
                     LDMFFDAAVGGGRRELYSTEEDLSGLKDNTLINTCRKLELISDVVYTKLNHILTMRND
                     IGASHPNSYSINAFELLGWLQTCVQDILNDKPSASAIQIKSFLENLKRSTDVLDEATI
                     HSMERPLNDLSLQNTDNLLNSIFGIYTADSTGNVVRKNIALFAPHIWNKSSDNVKYKL
                     GVTLDGYKNNLHNEKHALGIEFFTFCDGNRYQSLDSRIISLDGHADDLLEARYAWDNF
                     YNEPPHMRKILSYLKTENDIPL"
BASE COUNT         1380 a         1156 c         1236 g         1496 t
ORIGIN      
        1 taattcgtgc ctaatatact tcacttaact tatatcccag ctttgataca gatcatacaa
       61 attaaatgcc ccagtaattg gcaggctgag taacttaaaa ctccttagaa tataggatga
      121 tttgtatcgg cactcattcc accatgcatt ccgattaatc ccgcatagcc agttgaactt
      181 tgctactctg tgagaggtag taccttctat ccagtgcgga tttaattaat ggaataaatg
      241 attatgagtg aaaatgatac aaccccaaag aagtctacaa gccaggttaa caaagcggta
      301 ttctttacat ctgctttgct aattttcctt cttgtcgcct ttgccgccgt attcccggat
      361 gtcgccgaca aaaattttaa actacttcag caacaaatct tcacgaatgc cagctggttc
      421 tacatacttg ctgtggccct gattttactg agcgtcacgt tccttggact ctcacgttac
      481 ggtgatataa agctgggccc agaccatgcg cagcctgatt tcagctacca ctcctggttc
      541 gcgatgcttt tttcggcagg gatggggatc ggcctgatgt tctttggcgt tgccgaacct
      601 gtgatgcatt atctttcgcc acctgtcggc actccagaga ccgttgcggc agcgaaggaa
      661 gccatgcgcc tgacgttctt ccactggggt ctgcacgcat gggcaattta tgccatcgtg
      721 gcgctgattc tggccttttt cagttaccgt cacggtctgc ctttaacgct gcgttctgcg
      781 ctctatccca ttatcggcga tcgcatttac gggcctatag gccacgcggt tgatatcttc
      841 gccgtgatag gcactgtctt tggcgttgca acatcgctgg gttacggtgt attgcaggtg
      901 aatgccggtt tgaaccatct tttcggcgtg cccatcaatg aaacggtaca ggtcattttg
      961 atcgtggtca tcacggggtt agcgacgatt tcggtggtgt ccggcctgga caagggaata
     1021 cgcatcctgt ctgagcttaa tctgggcctg gcggtgttgc tcctggcgct ggtcttgtgc
     1081 ctgggtccca ctgtgcttct gctgaagtca tttgtggaaa atacgggtgg ttatctgtcg
     1141 gaactggtga gtaaaacgtt caacctttac gcgtatgaac ccaagtcgag caactggctg
     1201 gggggctgga cattattata ctggggatgg tggctttcat ggtcgccgtt tgtaggtatg
     1261 ttcattgcac gcgtttcccg cggcaggaca attcgtgagt tcgtgactgg cgtgttgttt
     1321 gttcccgccg gctttacgct catgtggatg acggtgtttg gaaacagcgc catctatctc
     1381 atcatgaacc agggcgccac tgacctcgcc aataccgttc agcaggatgt tgcgcttgcc
     1441 ctgtttaatt tcctggagca tttcccgttc tcttccgtgc tgtcattcat tgcaatggcg
     1501 atggtcatcg tcttctttgt aacgtctgct gattcggggg caatggttgt ggatactctg
     1561 gcatcaggtg gggtggcaaa cacgcccgtc tggcagcgaa ttttctgggc attgctcatg
     1621 ggcgttgttg ctattgccct gctgatcgca ggggggctga gtgcgttgca aaccgtaacg
     1681 atagcgagtg cattgccctt ctcagttatc ttattaatat ccatatacgg actgttaaaa
     1741 gccctgcgtc gggatttgac caagcgtgaa agccttagca tggcgactat tgctcctacg
     1801 gctgcacgta acccaattcc ctggcagaga aggttacgca atatcgcgta tttgccgaag
     1861 cgctctcttg tgaaacgttt tatggacgac attatccaac ccgccatgac gctggttcag
     1921 gaggaactta acaagcaggg aacgataagc cacatcagtg acgccgccga ggatcgtatt
     1981 cgccttgaag tcgatttggg caacgagctg aattatatat atgaagtgag gcttcgcggg
     2041 tataactcac cgaccttcgc gctcgctgcg ctggataatg atgagcagca gagtgaacaa
     2101 catcgatatt atcgcgctga agtctatctc aaagagggcg gccaaaatta tgatgtaatg
     2161 ggctggaatc aggaacagct gattaatgac atactggacc agtacgaaaa acacctgcac
     2221 ttcctgcatc tggttcgtta acagcaacat gccgccacag aggcggcatt tatttatccc
     2281 ggctgcaata tgagggaatg cagaatgatt tcacgctgga aatggatgct gaagcagaca
     2341 tttaaaaaac tatggttcag ggcaacgtta ttcgcaattg tcgcaataat aacggccctt
     2401 ttatcaattc tttttaaatc aatgatacct gagtcggttt ccgtgaaggt tggtgcggaa
     2461 gcagtcgata acattctgaa catactggca tcgagtatgc tggcagtgac cacattttcg
     2521 ctgagcatca tggtcacagc ctacggttca gccactacta atgtgactcc cagagctact
     2581 cgtttagttg ttgaagacgt caccacacaa aatgtactgg ccaccttcat cggttctttt
     2641 ctcttcagtc tggtagggat tattgccctc aatatgggag cttatggaga aagggggaga
     2701 gtcattttat tcattgtaac actggttgtc attgccttaa tcctcatcac attgcttcgc
     2761 tggatacagc atttgacctc tctggggagg gttggtgaga caacggcaaa agtagaacag
     2821 gcggccatcg aaacatttat tgcgagagca agaaatccct gtctcggcgg atatccatgg
     2881 cttgagaaca atgaacagcc gaaaggaacg gttgcagttt atccgaaaaa gattggctat
     2941 gttgaatatg ttgatatggt gaaactcagc aagctgctga ccaatgatcc ccgtcatgta
     3001 tacctcgtgg cgcagccggg cagtttcata catccgtcca cgccagtttt gtacctgagt
     3061 cagggccagg agtcatcaat cagcaccgat ttacttgaga cgattattgt ctcggatgta
     3121 cgttcatttg ctcaggaccc ccgattttgt cttagcgtca tggccgaaat agcctgccga
     3181 gccctttccc ccgcagtgaa cgatcctgga accgccattg atgtcattgg cagaggtgta
     3241 cgtatacttt ccgcttacgc gcagaataaa tctgatgaaa tagaagtgaa atatccttct
     3301 gtacatgttg caccacttca gaataacgat ctacttgaag actttttctc acctgttgcg
     3361 cgcgatggtg ccagtatgag ggaaattcag ataagggtcc ttaaaggact gtcgatgctg
     3421 agtaagggtt ggcctggaat ttttgctgaa gccgcacaaa ccctagcatt tgaaacatta
     3481 gagcatgcta ctcgtgctga ccatatagat tctgacagat atctaataaa atcaatttat
     3541 tataatttat ttagtggcga agattctaat aaaaaaccat agttgcggag caagcgatac
     3601 ggttgttggc aagtcaaggg caaagcattc gcgtgagagt gggcgtctgc tttgtgccaa
     3661 aagcgggcat tgggcgttgt ggtaaatgcc tgataatttc ttcttttact agcacaagcc
     3721 gctggataat tcccatgtgt ccagcttaag taaatcaaga acaactcgcg tactggctgt
     3781 ataaagtttg ccggacgcaa atttattgat ttcagaaaaa cctgttgaaa tagaggtata
     3841 tcagcgttag tttgatgtga gtaaagatca ggaaagaagg cagaaaaatg ttccacttgc
     3901 gggcaaaaaa gccttctatt aaattgttaa ggctttatga agatcgtaca ttacgaatcg
     3961 aattcaccat gggtagggaa catgaaatgt ccaaacccta agtgcgggag aaatgactcc
     4021 tgcttgattc gggataggtt gtactcgcat gaagtatgta ttggatctaa acccaaatac
     4081 tggtggcgtt tgctcacaaa taccttaaca agtttaggta tgggacgctc ctaacgtcgc
     4141 gcccctgcta aaagcgttag ctgttctcta gccttcaacc agataaggaa ataatcgtat
     4201 gagttcagaa ttgattgcaa aacctggaac aggggtactt tccacagata caacaaaatt
     4261 tgaaggatat ttatcctatc ttggtttgcc gaccgaaaat ataattgcct ctctccctga
     4321 gcgccaaatt attgaaaaaa acctccccac attcatagat tctttacctg ctgaggtaaa
     4381 aagagatgct cgatatttat caaagttcgt tgctggtgcg gctataggac tatttgatgc
     4441 atcgttaaat tatgtttgga atgaagttgt actgaattta agggaaaaag tagtagttta
     4501 tggcctcgat atgttctttg atgctgcagt tggaggagga cgtagagagc tttattctac
     4561 cgaagaagat ctttctggtt taaaagacaa cacccttatt aatacttgcc gaaaacttga
     4621 attaatatct gacgttgttt acaccaagct caatcatata ttgactatga ggaatgacat
     4681 tggtgcttcg cacccaaatt catactccat aaatgctttt gaacttcttg gctggctcca
     4741 aacatgcgtt caagatattt tgaacgacaa accgtccgcg tctgccatac aaataaaatc
     4801 attccttgag aatctaaaaa gatccactga tgttcttgat gaagccacaa ttcatagcat
     4861 ggaaagacct ttgaatgatc tgtcgcttca gaatactgac aatctactca atagtatttt
     4921 cggcatatat acagctgatt caacaggaaa tgttgtcaga aaaaatatcg ctctttttgc
     4981 tccgcatatc tggaataaaa gcagtgataa cgtaaaatac aagctcggcg tgacgctaga
     5041 cggatacaag aacaatcttc acaacgagaa acatgcttta ggtattgagt tttttacgtt
     5101 ttgtgatggt aatcgttatc aatcattaga ctctagaatt atatcactgg acggccatgc
     5161 cgacgatctc ttagaggcta ggtatgcttg ggataacttt tataatgaac cccctcatat
     5221 gcggaagatt ctttcgtatt taaagactga aaatgacata cctttaga
//
LOCUS       DAJVUN010000231         5217 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.232, whole genome shotgun sequence.
ACCESSION   DAJVUN010000231 DAJVUN010000000
VERSION     DAJVUN010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5217
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.232"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..576)
                     /locus_tag="OQQ76_003735"
     CDS             complement(<1..576)
                     /locus_tag="OQQ76_003735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HCS1970063.1"
                     /translation="MKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIW
                     SNTDDNNSENEDTSYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKTRLTFA
                     GLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYRNSD
                     FFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYA"
     gene            1143..1508
                     /locus_tag="OQQ76_003736"
     CDS             1143..1508
                     /locus_tag="OQQ76_003736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCS1970064.1"
                     /translation="MEKCDFYHIIVLSLNFPGYLKMEYGSTKMEERLSRSPGGKLALW
                     AFYTWCGYFVWAMARYIWVMSLIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGAL
                     LGSIAWYTRPRPARSRRYE"
     gene            1548..2243
                     /locus_tag="OQQ76_003737"
     CDS             1548..2243
                     /locus_tag="OQQ76_003737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HCS1970065.1"
                     /translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD
                     DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH
                     VIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ
                     HRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEG
                     VDHKVIDAFSPAG"
     gene            2310..3728
                     /gene="dcm"
                     /locus_tag="OQQ76_003738"
     CDS             2310..3728
                     /gene="dcm"
                     /locus_tag="OQQ76_003738"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-cytosine methyltransferase"
                     /protein_id="HCS1970066.1"
                     /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH
                     WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG
                     FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH
                     IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP
                     AMFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR
                     ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR
                     YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMAKGEKDFDDP
                     LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL
                     EPKIKQAVALRQQEAQHGRRSR"
     gene            3709..4179
                     /gene="vsr"
                     /locus_tag="OQQ76_003739"
     CDS             3709..4179
                     /gene="vsr"
                     /locus_tag="OQQ76_003739"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VSPR family DNA mismatch endonuclease"
                     /protein_id="HCS1970067.1"
                     /translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA
                     SLPGSPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS
                     RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA"
     gene            complement(4168..5088)
                     /gene="yedA"
                     /locus_tag="OQQ76_003740"
     CDS             complement(4168..5088)
                     /gene="yedA"
                     /locus_tag="OQQ76_003740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HCS1970068.1"
                     /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
                     LAAGILLMAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV
                     VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI
                     SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL
                     ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI
                     VFAVVLVTLGKYLFPAKPVVAPVIQDASSE"
BASE COUNT         1403 a         1244 c         1329 g         1241 t
ORIGIN      
        1 cgcatagcca tcaccgtttt gtttagtaac gccacgattg ctgttcttac cttgatattg
       61 cacagcaaaa ttcagaccat caaccagacc aaagaaatca gagttacggt aggttgcaac
      121 accgttggta cgaccgttca tgaagttgtc agcggaagcc caggaatcac caccccattc
      181 aactaacata tcggtataag ctgcggcatc ataagcaaca ccgtagttac gaccatagtc
      241 gaaagatcct aactcgttat atttcaaacc tgcgaaggtt aaacgggttt tttcctgatt
      301 agagccttcg ggcttgctgg cgtcgaggtt gtattcaaac tgaccaaaac cagtcagttc
      361 gctggtgatt tgggtttcac ctttaacacc gaaacgagca taggaggtat cttcgttttc
      421 gctgttatta tcatcagtat ttgaccagat gcgttcgcca accatcttgc cgtagaaatc
      481 aactttattg ccatctttat tgtaaatttc agccgcattt gctgcgccag caactaataa
      541 cgccgggacc agcattgcca gaacttttct tttcattatg tattcccttg tgattataat
      601 cttcatgaat atatcaataa gtgccgttat ccaaaaaaaa gcacatttgg atactattct
      661 atgaagttca ttttatttta agtgttacat gcaacaaatg tatttaaaag atttcaaaat
      721 gtttctaatc tatttaatgt aattcagaat tatgaattct aaatataaat attcatgaaa
      781 attataaatg catatcaata tgttatgagt tgagcggaaa catagggggt atcaatgatt
      841 gttgcgccaa acggctggtg tgatcaggcg cacattaatg aaggcataaa aaaaagccgg
      901 catcatgccg gcccaaaaaa tataaacaag acgataaaag gctaataacg gaagcatcat
      961 gacacagaat aataaaaagg tataattgta atcagtgcta atatattgat taaatgaatt
     1021 aataaagccg atatcaaaga taaataaaat cgctcaaaac gatttttcct gtattcactg
     1081 ccgttgcgca aaatttatct atttgttcaa aaaatgattg agtcttgact ggctcatcca
     1141 atgtggaaaa atgtgacttt tatcacataa tagtactaag tctgaatttt ccgggttatc
     1201 tcaaaatgga atacggttcg acaaagatgg aagagagact ctctcgcagc cctggcggca
     1261 aactggcttt gtgggctttc tatacatggt gtggctattt cgtctgggca atggcgcgtt
     1321 acatctgggt gatgagcctg atccccgatg cccccgtgtc gggatttgaa agcgatttag
     1381 gctctaccgc gggaaagtgg ttaggggcac tggtcggatt tttatttatg gctctggtcg
     1441 gggcattgtt aggcagcatt gcctggtaca cccgacctcg tcccgcacgt agcagacgct
     1501 atgaataaaa actgctaagg tggcgactct ttggcaacgg agcgcgtatg gacttacaac
     1561 actggcaggc acagttcgaa aactggttga aaaaccatca tcagcaccag gacgcggccc
     1621 atgacgtgtg tcattttcgc cgcgtctggg ctacggcaca gaagctggcg gcagatgacg
     1681 atgtcgatat gctggtgatt ttaaccgcct gttattttca cgatattgtg agcctggcga
     1741 aaaatcatcc gcaaaggcag cgttcttcaa tcctggcggc agaagagacg cgtcgcctgc
     1801 tccgtgaaga gttcgagcaa tttccggcgg agaaaatcga ggccgtttgt catgtcattg
     1861 ccgctcacag tttcagcgcg caaatcgccc ccttaacaac ggaagctaaa atcgtccagg
     1921 atgcggatcg gctggaagcc ctgggggcga ttggcctggc gcgcgtgttt gccgtttcag
     1981 gggcattggg cgtggcgctg tttgatggtg aagatccgtt cgcacagcat cgcccgcttg
     2041 atgataaacg ctacgcgctg gatcatttcc agactaagtt gctgaagcta ccgcaaacca
     2101 tgcaaaccgc aagaggcaag cagctggcgc agcacaacgc gcatttttta gtcgagttta
     2161 tggcgaagct cagtgccgaa ctggcggggg agaatgaagg tgtcgatcac aaggtgatag
     2221 atgcgttttc acccgcggga taagcgcgtg gccctaaatg gctgtaatta tgttaacctg
     2281 tcggccatct cagatggccg gttaaatcta tgcaggaaaa tatatcagta accgattcat
     2341 acagcaccgg gaatgccgca caggcaatgc tggagaaact gctgcaaatt tatgatgtta
     2401 aaacgctggt ggcgcagctt aatggtgtgg gtgagaatca ctggagcgcg gcaattttaa
     2461 aacgtgcgct ggcgaatgac tcggcatggc accgtttaag tgagaaagag ttcgcccatc
     2521 tgcaaacgtt gttacccaaa ccaccggcac atcatccgca ttatgcgttt cgctttatcg
     2581 atctatttgc cggaattggc ggcatccgtc gcggttttga atcgattggc ggacaatgcg
     2641 tgtttaccag cgaatggaac aaacatgcgg tacgcactta taaagccaac cattattgcg
     2701 atccggcgac gcatcatttt aatgaagata tccgcgatat caccctcagc cataaagaag
     2761 gcgtgagtga tgaggcggcg gcggaacata ttcgtcaaca cattcctgaa cacgatgttt
     2821 tactggccgg tttcccttgt cagccatttt cgctggctgg cgtatcgaaa aagaactcgc
     2881 tcgggcgggc gcacggtttt gcctgcgata cccagggcac gctgtttttt gatgtggtac
     2941 gcattatcga cgcgcgtcgt ccggcgatgt ttgtgctcga aaacgtcaaa aacctgaaaa
     3001 gtcacgacca gggtaaaacg ttccgcatca tcatgcagac gctggacgaa ctgggctatg
     3061 acgtggctga tgcagaagat aacgggccgg acgatccgaa aatcatcgat ggtaaacatt
     3121 ttctgccgca gcaccgtgaa cgcatcgtgc tggtgggttt tcgtcgcgat cttaatctga
     3181 aagccgattt tactctgcgt gatatcagcg aatgtttccc tgcacagcga gtgacgctgg
     3241 cgcagctgtt ggacccgatg gtcgaggcga aatatatcct gacgccggtg ctgtggaagt
     3301 acctctatcg atatgcgaaa aaacatcagg cgcgcggtaa cggcttcggt tatggaatgg
     3361 tttatccgaa caatccgcaa agcgtcacgc gtacgctgtc tgcgcgttat tacaaagatg
     3421 gcgcggaaat tttaatcgat cgcggctggg atatggccaa aggtgagaaa gactttgacg
     3481 atccgctgaa tcagcaacat cgtccacgtc ggttaacgcc tcgggaatgc gcgcgcttaa
     3541 tgggttttga agcgccggga gaagcgaaat tccgcattcc ggtttcggac actcaggcct
     3601 atcgccagtt cggtaactcg gtggtcgtgc cggtctttgc cgcggtggca aaactgcttg
     3661 agccaaaaat caaacaggcg gtggcgttgc gtcagcaaga ggcacaacat ggccgacgtt
     3721 cacgataagg ccactcgcag caaaaatatg cgcgcgattg ccacgcgtga tacggcgatt
     3781 gagaagcgcc tcgccagtct gttaaccggg cagggcctag cgtttcgcgt tcaggacgcc
     3841 agtctgcccg gaagcccgga ttttgtcgtt gatgaatatc gctgcgtgat atttacccat
     3901 ggctgcttct ggcatcatca tcactgctat ctgtttaaag tacctgcgac tcgaaccgag
     3961 ttctggctgg agaagatagg taaaaatgtt gaacgcgatc gccgcgatat cagtcgtttg
     4021 caggaactcg gctggcgcgt actgattgtc tgggagtgtg cattacgtgg gcgcgagaag
     4081 ctgacggatg aagcgcttac cgagcgtctg gaagagtgga tctgcggcga aggtgccagc
     4141 gcgcagatcg acacgcaggg gattcattta ctcgcttgat gcgtcctgaa taactggcgc
     4201 aactacgggt tttgccggga agagatattt tcccaacgtg accagtacca ccgcgaagac
     4261 aattacgccg agcgccagcc attcaatctt cgacagcgtc tctccgccca gtcccgtacc
     4321 cagcaagacc gcgaccaccg ggttaacgta ggcgtagctg gtggcgagag ccggactgac
     4381 attacggatt aaatacatat aagcgttgat ggcgataatc gaaccaaaca gcgccagata
     4441 gccgaccgca aggaagcctg aaagggaagg gagcgccgtc agtttttcac ctgcaatcat
     4501 cgacgcgatc attaacacca cgcctgccgc cagcatctca atcgcacccg ccatcatccc
     4561 tacaggtaag gtaatgcgcg agccataaac cgagccaaac gcccagctaa tcgagccgat
     4621 taaaatcaga atcgcgcccc acggattgcc gcttaaattt ccaccgctat tgagcatgat
     4681 gattccggca agcccaatgg cgatacccac ccattccaat ttgcgcgttt taatgccaaa
     4741 caggcggctg aagcacaggg taaagagggg cacggttgca accacaacgg cggcgatgcc
     4801 ggaaggaaca ttttgatgct cggcaaccgt caccatgcca ttaccgacag ccagcaataa
     4861 caggccaatc agcgcggcat tgagcagcgg acgtagcggg gggagcttgt gtccgcgcag
     4921 tagcaaaaat gccatcaata aaataccggc tgccaggaat cgaacgcctg ccatcattaa
     4981 cggaggccag ctttccacgc caatccgaat gacaaaatag gttgagcccc aaatgatata
     5041 caacgcaaac agcgcgccaa aaagcggtaa caactggcgg aaacgcataa tccctcacgg
     5101 tggaaataaa aaggtggttc atagtaaacg tgaaaatcat tctgctggcg agagatataa
     5161 ttgcacttaa ttgttaaaaa aatgttgacc tgtgaagcaa gtatcagagc tgccgtt
//
LOCUS       DAJVUN010000232         5126 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.233, whole genome shotgun sequence.
ACCESSION   DAJVUN010000232 DAJVUN010000000
VERSION     DAJVUN010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5126
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.233"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..4051)
                     /locus_tag="OQQ76_003741"
     CDS             complement(<1..4051)
                     /locus_tag="OQQ76_003741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS1970069.1"
                     /translation="MNKIFKVIWNPATGNYTVTSETAKSRGKKSGRSKLLISALVAGG
                     MLSSFGALANAGNDNGQGVDYGSGSAGDGWVAIGKGAKANTFMNTSGSSTAVGYDAIA
                     EGQYSSAIGSKTHAIGGASMAFGVSAISEGDRSIALGASSYSLGQYSMALGRYSKALG
                     KLSIAMGDSSKAEGANAIALGNATKATEIMSIALGDTANASKAYSMALGASSVASEEN
                     AIALGRSSVASGTDSLTFGRQSLASAANAIAIGAETEAAENATAIGNNAKAKGTNSMA
                     MGFGSLADKVNTIALGNGSQALADNAIAIGQGNKADGVDAIALGNGSQSRGLNTIALG
                     TASNATGDKSLALGSNSSANGINSVALGADSIADLDNTVSVGNSSLKRKIVNVKNGAI
                     KSDSYDAINGSQLYAISDSVAKRLGGGAAVDVDDGTVTAPTYNLKNGSKNNVGAALAV
                     LDENTLQWDQTKGKYSAAHGTSSPTASVITDVADGTISASSKDAVNGSQLKATNDDVE
                     ANTANIATNTSNIATNTANIATNTTNITNLTDSVGDLQADALLWNETKKAFSAAHGQD
                     TTSKITNVKDADLTADSTDAVNGSQLKTTNDAVATNTTNIANNTSNIATNTTNISNLT
                     ETVTNLGEDALKWDKDNGVFTAAHGTETTSKITNVKDGDLTTGSTDAVNGSQLKTTND
                     AVATNTTNIATNTTNISNLTETVTNLGEDALKWDKDNGVFTAAHGNNTASKITNILDG
                     TVTATSSDAINGSQLYDLSSNIATYFGGNASVNTDGVFTGPTYKIGETNYYNVGDALA
                     AINSSFSTSLGDALLWDATAGKFSAKHGTNGDASVITDVADGEISDSSSDAVNGSQLH
                     GVSSYVVDALGGGAEVNADGTITAPTYTIANADYDNVGDALNAIDTTLDDALLWDADA
                     GENGAFSAAHGKDKTASVITNVANGAISAASSDAINGSQLYTTNKYIADALDGDAEVN
                     ADGTITAPTYTIANAEYNNVGDALDALDDNALLWDETANGGAGAYNASHDGKASIITN
                     VANGSISEDSTDAVNGSQLNATNMMIEQNTQIINQLAGNTDATYIQENGAGINYVRTN
                     DDGLAFNDASAQGVGATAIGYNSVAKGDSSVAIGQGSYSDVDTGIALGSSSVSSRVIA
                     KGSRDTSITENGVVIGYDTTDGELLGALSIGDDGKYRQIINVADGSEAHDAVTVRQLQ
                     NAIGAVATTPTKYFHANSTEEDSLAVGTDSLAMGAKTIVNGDKGIGIGYGAYVDANAL
                     NGIAIGSNAQVIHVNSIAIGNGSTTTRGAQTNYTAYNMDAPQNSVGEFSVGSADGQRQ
                     ITNVAAGSADTDAVNVGQLKVTDERVAQNT"
     gene            complement(4095..4778)
                     /locus_tag="OQQ76_003742"
                     /pseudo
     CDS             complement(4095..4778)
                     /locus_tag="OQQ76_003742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001049551.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
BASE COUNT         1209 a         1217 c         1183 g         1517 t
ORIGIN      
        1 gggtattttg cgctacgcgc tcatcagtga ctttcaactg acccacgtta accgcatcgg
       61 tatccgctga accagctgcg acgtttgtga tctgacgttg accatccgca ctaccgactg
      121 agaattcacc gacagagttc tgcggtgcgt ccatgttgta ggcggtataa ttggtttgag
      181 cgccacgagt ggtcgtagaa ccattaccta tcgcaatact gttgacatga atgacttgcg
      241 cattgctacc aatggcaatg ccgttaagtg cattcgcgtc cacgtaggca ccataaccga
      301 taccaatacc tttatcgcca ttcacgatgg ttttcgcacc cattgccagc gagtcagttc
      361 ccactgccag tgaatcttct tccgttgaat tagcgtggaa gtatttagtc ggcgtggttg
      421 cgaccgcacc aatcgcattc tgcaattgac gaaccgtaac ggcgtcatgg gcttcggaac
      481 catcggctac gttgatgatt tgacgatatt taccgtcatc accgatagac aatgcaccga
      541 gcagttcgcc atccgtggtg tcgtaaccaa taacaacgcc attttccgtt atgctggtgt
      601 cacgggagcc tttggcaatc actcggctgg aaacagagct gctacctagg gcgatacccg
      661 tatcaacgtc gctgtagctg ccctgaccaa tagctacgct gctatcgcct ttggcgacag
      721 agttataacc tatagctgta gcgccaacac cctgtgcgct ggcgtcgttg aacgctaagc
      781 cgtcgtcgtt agtacgcaca tagttaatac ccgcaccgtt ttcttggata taggttgcgt
      841 cggtgttacc agcgagctga ttgataattt gggtgttctg ctcaatcatc atattcgtcg
      901 cattcaactg agaaccgttc actgcatcgg tactgtcctc actaatactg ccattagcga
      961 cattagtgat gatgctggct ttaccgtcat ggctggcatt gtaggctcca gcaccgccat
     1021 tggcagtctc atcccacagc agggcgttat catcaagcgc atccagggcg tcaccaacgt
     1081 tgttgtactc ggcgttcgca atggtgtaag tcggtgcggt gatggtgccg tcagcgttga
     1141 cttctgcgtc accatccagc gcatcagcga tgtacttatt ggtggtatag agttgtgagc
     1201 cgttaatcgc gtcgctgctg gcagcagaga ttgcaccgtt agcgacgtta gtgattacac
     1261 tggcagtttt atcttttcca tgagcggcgc taaatgcacc attttcaccg gcgtccgcat
     1321 cccagagcag agcgtcgtca agagtggtat cgatagcatt cagggcatca ccgacattat
     1381 cgtaatcagc attagcaatg gtgtacgtcg gcgcagtgat ggtgccgtct gcattgactt
     1441 cggcaccacc ccccagcgca tcaacaacat aactgctcac gccgtggagt tgtgagccgt
     1501 ttactgcgtc agaactggag tctgaaattt caccatctgc gacatcagtg atcacgcttg
     1561 cgtcaccatt agtaccgtgt ttggcactga atttacctgc ggtggcatcc caaagcagag
     1621 catcgccgag agacgtgcta aatgaggagt taatcgcagc cagtgcatcg ccgacgttat
     1681 aataatttgt ttcaccgatt ttgtaggttg gaccggtaaa cacaccgtca gtattcacag
     1741 aagcattgcc gccgaagtag gtggcgatat tgctgcttaa gtcataaagc tggctaccgt
     1801 taatggcatc ggaactggtt gcagtgactg tgccgtccag gatattggtg attttgctgg
     1861 cggtattgtt gccatgagct gcagtgaaga caccattgtc cttatcccat ttcagcgcat
     1921 cctcaccaag attagtcacc gtctcagtca gattagagat gttggtggtg ttagtggcga
     1981 tattggtggt attcgtcgcc acggcatcgt tggtggtttt cagctgagag ccgttaacgg
     2041 catcggtgct gccagtcgtc aggtcgccat ctttaacgtt ggtgattttg ctggtggtct
     2101 cggtgccatg agctgccgtg aatacaccat tgtccttatc ccatttcagc gcatcctcac
     2161 caagattagt caccgtctca gtcagattag agatgttggt ggtgttagtg gcaatattgg
     2221 aagtgttatt ggcgatattg gtggtattcg tcgccacagc atcgttggtg gttttcagct
     2281 gagagccgtt aacagcatca gtgctgtcag ccgtcaggtc ggcatcttta acgttggtga
     2341 ttttgctggt ggtatcctgg ccgtgagctg cactgaatgc ctttttagtt tcgttccaga
     2401 gcagggcatc agcctgaagg tcaccaacgg aatccgtcag gttggtgata ttggtggtat
     2461 tggtggcaat atttgccgta ttcgtggcaa tgttgctggt attagtagcg atattggcgg
     2521 tgttggcttc gacatcgtca ttggtagctt tcagttggga accgttaacc gcatccttac
     2581 tggaggctga aatcgtgcca tccgcaacat cggtgattac gctggcagtt gggctactag
     2641 taccatgagc agcgctgtat ttgcctttgg tttggtccca ttgcagggtg ttttcatcaa
     2701 gtacagcgag cgcagcccct acgttatttt tgctaccatt ttttaaattg taggttggtg
     2761 ctgtaacagt accgtcatca acatctactg cagcccctcc tccaagcctt tttgctaccg
     2821 agtcgctaat ggcataaagc tgtgaaccat taatggcatc gtaactgtca gacttgatcg
     2881 cgccattttt cacattaacg atcttgcgtt ttaatgaact attgccgaca gagacggtat
     2941 tgtctaaatc cgcaatggaa tctgcgccca gcgcgacaga gttaataccg ttggcactgc
     3001 tattactacc aagcgcaaga ctcttatcac cagttgcatt actggctgtg cctaaggcaa
     3061 tggtgtttaa gcctctcgac tggctaccat tacccagagc gatggcatcc acgccatcag
     3121 ctttgttgcc ctggcctatg gcgattgcat tatctgccag agcctggctg ccatttccta
     3181 atgcgatagt attgacttta tcggcaaggc ttccgaaccc cattgccatg ctattagtcc
     3241 cttttgcctt cgcattattg ccaatagcag ttgcattttc agcggcttcg gtctcagcac
     3301 ctatcgcaat agcgttcgct gcgctggcaa gtgattgtct gccaaatgtg aggctgtcag
     3361 taccgctagc tacactgcta cgccccaggg caattgcgtt ttcttcagat gcgacgctac
     3421 ttgctcccag cgccattgaa tacgcttttg acgcattggc ggtgtcgcca agagcaatac
     3481 tcataatctc agtagcttta gtggcatttc ccagggcaat ggcgtttgct ccttccgctt
     3541 tggaagagtc ccccatagca atagacaatt tacccaatgc ttttgaataa cggccgaggg
     3601 ccattgagta ttggcccaat gaatacgaag aggcacccag tgctatactt ctatcgcctt
     3661 ctgatattgc actaacccca aaggccattg atgcaccacc aatcgcatgg gtttttgacc
     3721 cgatggcaga gctatattgg ccttcagcta tagcgtcata acccacagca gtactggaac
     3781 cactggtgtt cataaaagta tttgctttcg cccctttgcc tatagcaacc cagccgtcgc
     3841 cagctgatcc actaccgtaa tcaacaccct gaccgttgtc attcccggca ttcgccaatg
     3901 ccccaaacga cgacaacatt ccacccgcaa ccagcgcaga aattaacagc ttactgcgcc
     3961 cagatttctt gccacggctt tttgccgttt cgctggtaac agtataattc cctgtcgcag
     4021 ggttccagat aactttaaat attttgttca ttaatgatgc tcgctattcc ttgttataag
     4081 cgtactaact gcatttattt tttgcttctt ttctgccgat tttcagcaga gggaagattg
     4141 tcgaactgaa tattttccat gttgatggct aacttcagat atcccaggtt attgggcgat
     4201 acacccttca gggtcaaatt aatgtcttgc cattgacctg gtaataattt caatgtggat
     4261 ttcattgatg tgttgaaaag taattgttgc caccgggcaa actctttggc atcgacaggt
     4321 ttttcaccac cccatgtcgc attaaaacca atatttgaga taggtgtact taataagttg
     4381 accagtgaaa tatgaataac actgccattc tctgtggcgt caatggataa cactcgaccc
     4441 gctaaagcca ccgaaccatt gttcaggatg aaatacttcg tttttgctgg gttaaactcg
     4501 gtaaaaataa aagtgttttg ttgatcttta acggatttaa ttacgtgagt taaagtcttt
     4561 gtactgctta ttatgccagt ttgttgtttt tgaatagttt ccagttgact ctttagctat
     4621 gcttgttgtt tttcaagtag atcaatttta ttgttatgtt cttcttgttg tttcaataaa
     4681 ctactttctg gcttgccttc ttcaatgtag tcacatcccg ttaatgcgca gagaactgaa
     4741 acagtgacag cactgaaaaa aatcttcttc aagttcatgt gaaaatcctt atttcctccg
     4801 accagcgatc aatgccggta gagttgtcca ttgtattatt ggtgatttat gttgctttac
     4861 attaatgaca gtgatgtgtg tcgattaaat attgttttaa gcattcatca taaaaatgta
     4921 tcattcgttt caaaagatgt ctgtgtttgt atgaatatat tatttttgtg gattctaatg
     4981 atgattatta ataaatgtca aatatgaaag aaaccatgtc tgggaaaaaa tttacagata
     5041 atttattgta tgaatatgat gattaaaata tcacaattaa atccgaaaaa aagagacgta
     5101 actgcttgtt aattaataaa tgatat
//
LOCUS       DAJVUN010000233         4869 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.235, whole genome shotgun sequence.
ACCESSION   DAJVUN010000233 DAJVUN010000000
VERSION     DAJVUN010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4869
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.235"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            62..1861
                     /gene="cysJ"
                     /locus_tag="OQQ76_003743"
     CDS             62..1861
                     /gene="cysJ"
                     /locus_tag="OQQ76_003743"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent assimilatory sulfite reductase
                     flavoprotein subunit"
                     /protein_id="HCS1970070.1"
                     /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL
                     NQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK
                     FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF
                     FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSV
                     ATGAVNEIHASPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
                     GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT
                     LTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAT
                     SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN
                     PETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKD
                     GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL
                     LEVIAEFGGMDTEAADEFLSELRVERRYQRDVY"
     gene            1861..3573
                     /gene="cysI"
                     /locus_tag="OQQ76_003744"
     CDS             1861..3573
                     /gene="cysI"
                     /locus_tag="OQQ76_003744"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HCS1970071.1"
                     /translation="MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGF
                     KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKF
                     AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN
                     PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT
                     TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY
                     LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI
                     RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRI
                     TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF
                     LPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN
                     RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR
                     DLWD"
     gene            3648..4382
                     /gene="cysH"
                     /locus_tag="OQQ76_003745"
     CDS             3648..4382
                     /gene="cysH"
                     /locus_tag="OQQ76_003745"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS1970072.1"
                     /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL
                     PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK
                     VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ
                     SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT
                     RKWEPGMSEEETRFFGLKRECGLHEG"
     gene            4647..4799
                     /locus_tag="OQQ76_003746"
     CDS             4647..4799
                     /locus_tag="OQQ76_003746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HCS1970073.1"
                     /translation="MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVL
                     AYESKK"
BASE COUNT         1195 a         1259 c         1390 g         1025 t
ORIGIN      
        1 tctgttttat gggcgctgac agggcgcaga aacagctttg cttactggaa cataacgacg
       61 catgacgaca caggtcccac cttccgcgtt gcttccgttg aacccggagc aactggcacg
      121 ccttcaggcg gccacgaccg atttaacgcc tacccagctt gcctgggttt ctggctattt
      181 ctggggcgta ctcaatcagc agcctgctgc gcttgcagcg acgccagcgc cagccgcaga
      241 aatgccgggt ataactatta tctccgcctc gcaaaccggc aatgcgcgcc gggttgctga
      301 agcattacgc gatgatttat tagcagcaaa actgaacgtt aagctggtga acgcgggcga
      361 ctataaattc aaacaaatcg ccagcgaaaa actgctcatc gtagtgacgt caacgcaagg
      421 ggaaggggaa ccgccggaag aagccgtcgc gctgcataag ttcctgttct ccaaaaaagc
      481 gccaaagctg gaaaacaccg cgtttgccgt gtttagcctc ggcgatagct cttatgaatt
      541 tttctgccag tccgggaaag atttcgacag caagctggcg gaactgggtg gtgaacgcct
      601 gctcgaccgt gtcgatgccg atgttgaata ccaggctgct gccagcgagt ggcgcgcccg
      661 cgtggttgat gcgcttaaat cgcgtgcgcc tgtcgcggca ccttcgcaat ccgtcgctac
      721 tggcgcggta aatgaaatcc acgccagccc gtacagcaaa gacgcgccgc tggtggctag
      781 cctctctgtt aaccagaaaa ttaccgggcg taactctgaa aaagacgttc gccatatcga
      841 aattgactta ggtgactcgg gcctgcgtta ccagccgggt gacgcgctgg gcgtctggta
      901 tcagaacgat ccggcactgg tgaaagaact tgtcgaactg ctgtggctga aaggcgatga
      961 acctgtcacc gtcgagggca aaacgttgcc tctgaacgaa gcgctacagt ggcacttcga
     1021 actgaccgtc aacaccgcca acattgttga gaattacgcc acgcttaccc gcagcgaaac
     1081 actgctgccg ctggtgggcg ataaagcgaa gttacagcat tacgccgcga cgacgccgat
     1141 tgtcgacatg gtgcgtttct ctccggcgca actggatgcc gaagcgctga ttaatctgct
     1201 gcgcccgctg accccgcgcc tgtattccat cgccacctcg caggcggaag tcgagaacga
     1261 agtacacgtc accgttggtg tggtgcgtta cgacgtggaa ggccgagccc gtgccggtgg
     1321 tgcctccagc ttcctcgcgg atcgcgtgga agaagagggc gaagtccgcg tatttatcga
     1381 acataacgat aactttcgcc tgcccgctaa cccggaaacc ccggtgatta tgattggccc
     1441 aggcaccggt attgcgccgt tccgcgcctt tatgcagcaa cgcgccgccg acgaagcgcc
     1501 aggtaaaaac tggctgttct ttggtaatcc gcactttacg gaagacttcc tgtaccaggt
     1561 ggagtggcag cgctacgtca aagatggcgt gctgacacgt atcgatcttg cctggtcgcg
     1621 cgaccaaaaa gaaaaagttt acgtacaaga caaactgcgc gaacagggcg cggagctgtg
     1681 gcgctggatc aatgatggtg cccacattta tgtctgcggc gacgctaatc gcatggcgaa
     1741 agacgttgag caggcacttc tggaagtgat tgccgaattt ggtggcatgg acaccgaagc
     1801 ggcggatgaa tttttaagtg agctgcgcgt agagcgccgt tatcagcgag atgtctacta
     1861 atgagcgaaa aacatccagg gcctttagtg gtcgaaggaa aactgacaga cgccgagcgc
     1921 atgaagcttg aaagcaacta cctgcgcggc accattgcgg aagatttaaa cgacggtctg
     1981 accggcggct ttaagggcga caacttcctg ctgatccgct tccacggcat gtatcagcag
     2041 gatgaccgcg acatccgcgc cgaacgtgct gaacagaagc tggagccgcg ccacgcgatg
     2101 ctgcttcgct gtcgtctgcc gggtggggtg attaccacta aacagtggca ggcgatcgac
     2161 aaatttgccg gtgaaaacac catctatggc agcattcgcc tgaccaaccg ccagacattc
     2221 cagttccacg gcattctgaa aaagaacgtc aaaccggtgc accagatgct gcactcggtc
     2281 ggtcttgatg cgctggcgac agctaacgac atgaaccgta acgtactctg cacctcgaac
     2341 ccttacgagt cgcagctgca cgcggaagcg tacgagtggg cgaagaagat ttctgagcat
     2401 ctgttgcctc gtacccgcgc gtatgcggag atctggctcg accaggaaaa agtcgccact
     2461 actgatgaag aaccgatcct tggtcagacc tacctgccgc gtaagttcaa aaccacggta
     2521 gtgatcccgc cgcagaacga tatcgatctg catgccaacg acatgaactt cgtggcaatc
     2581 gccgaaaacg gcaagctggt aggcttcaac ctgctggtgg gcggtgggct ttctatcgaa
     2641 cacggcaaca agaaaaccta cgcccgcacg gcgagcgagt ttggctatct gccgctggag
     2701 catacgctgg cggtggccga agccgtcgtg acaactcagc gtgactgggg taaccgaacc
     2761 gatcgtaaaa atgccaaaac caaatacacg ctggagcgcg tgggggttga gacgtttaaa
     2821 gcggaagtgg agcgtcgcgc ggggatcaaa tttgaaccga tccgtccata tgagttcacc
     2881 ggacgaggcg atcgtattgg ctgggttaag ggcattgatg ataactggca cctgacgctg
     2941 tttatcgaaa atggtcgcat ccttgattat cccgggcgtc cgctgaaaac cggcctgctg
     3001 gagatcgcga agatccacaa aggcgatttc cgcattacgg cgaaccagaa tctgatcatc
     3061 gccggtgtac cggaaagcga gaaagcgaag atcgagaaga tcgccaaaga gagcgggtta
     3121 atgaatgccg tcacgccgca gcgtgaaaac tcgatggcct gcgtgtcatt cccgacttgc
     3181 ccgctggcga tggcggaagc agagcgtttc ctgccgtctt ttatcgacaa catcgataat
     3241 ttaatggcga aacatggtgt cagcgatgag catatcgtga tgcgtgtaac aggctgcccg
     3301 aacggttgtg gtcgcgcgat gctggcggaa gtgggcctgg tgggtaaagc gccgggtcgc
     3361 tacaacctgc atcttggcgg caaccgcatt gggacacgta tcccacggat gtataaagaa
     3421 aacatcaccg agccggaaat cctggcgtcg cttgatgaac tgatagggcg ctgggcgaaa
     3481 gagcgcgaag cgggtgaagg cttcggcgac tttacggtgc gtgcgggcat cattcgcccg
     3541 gtgctcgatc cggcgcgcga tttgtgggat taaccatcag cccggtcttg taggcctgat
     3601 aagaacgcgt gagcgtcgca tcaggcaagg caaacagtga ggaatctatg tccaaactcg
     3661 atctaaacgc cctgaacgaa ctgccgaagg tagatcgcat tctggcgctg gcggaaacta
     3721 acgccgaact ggaaaaactg gacgctgaag gccgcgtagc ctgggcgctg gataatctgc
     3781 ccggtgaata tgtactttct tccagctttg gcattcaggc ggcggtgagc ctgcatctgg
     3841 tgaatcaaat tcgcccggat attccggtga tcctcaccga tacgggttac ttgttcccgg
     3901 aaacctaccg ctttattgac gagttaacgg acaaactcaa gctcaacctg aaagtgtacc
     3961 gtgctaccga aagcgcagcc tggcaggaag cacgctacgg aaaactgtgg gagcagggcg
     4021 ttgaaggcat tgaaaagtac aatgacatca acaaagtcga accgatgaac cgggctctga
     4081 aagaacttaa cgcgcaaacc tggtttgctg gcctgcgccg tgaacaatcc ggcagtcgcg
     4141 ccaatttacc ggtgctggca attcagcgtg gcgtatttaa agtgctgccg attatcgact
     4201 gggataaccg aactatttat cagtacctgc aaaaacatgg cctgaaatat cacccattat
     4261 gggatgaagg atatttatcg gtcggtgata cccatacaac ccgtaaatgg gaacctggca
     4321 tgtcggaaga agaaacacgt ttctttggct taaaaaggga atgtggattg cacgaagggt
     4381 aaatattgcc ggataaatta aacgcctctg tcagaaatga tgggggcgtt tttattttgc
     4441 gagcagtatt cctgatttta aacgtgaacg ccgctggaag aattatcagg tatagaatgg
     4501 cgtcgggtgc ttgaggctgt ctggcgttaa gcattcgcga ggttccagat ggacaaaagc
     4561 cccaggcgat atttctatca acctgaggcc agcgttcgaa cccaaacaat tcgaatgtta
     4621 gtctcttctt tgcagggagg caagacatgc tgacaaaata tgcccttgtg gcaatcatag
     4681 tgctgtgttt tacagtactg ggattcacgc tgatggtagg cgactcgttg tgtgagttga
     4741 gtatcagaga acgtggtatg gagtttaagg cagttctcgc ttacgaatcg aagaagtagc
     4801 caccacgcgg gggtaaaacc ccgcgtactg aattgtgatg gtttggtctc ctgcaccctt
     4861 ttttaattt
//
LOCUS       DAJVUN010000234         4852 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.236, whole genome shotgun sequence.
ACCESSION   DAJVUN010000234 DAJVUN010000000
VERSION     DAJVUN010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.236"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(75..263)
                     /gene="dsrB"
                     /locus_tag="OQQ76_003747"
     CDS             complement(75..263)
                     /gene="dsrB"
                     /locus_tag="OQQ76_003747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein DsrB"
                     /protein_id="HCS1970074.1"
                     /translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGI
                     WFFNEAGHQDGIFVEKAE"
     gene            426..653
                     /gene="yodD"
                     /locus_tag="OQQ76_003748"
     CDS             426..653
                     /gene="yodD"
                     /locus_tag="OQQ76_003748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid resistance protein YodD"
                     /protein_id="HCS1970075.1"
                     /translation="MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHV
                     SVDGREYHTWRELADAFELDIHDFSVSEVNR"
     gene            951..1766
                     /locus_tag="OQQ76_003749"
     CDS             951..1766
                     /locus_tag="OQQ76_003749"
                     /EC_number="3.1.3.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate phosphatase-related
                     protein"
                     /protein_id="HCS1970076.1"
                     /translation="MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLSRLREANVPVI
                     LCSSKTSAEMLYLQKTLGLQGVPLIAENGAVIQLAEQWQDIDGFPRIISGISHGEISQ
                     VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ
                     FTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND
                     APLLEVIDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR"
     gene            complement(1763..3457)
                     /gene="yedQ"
                     /locus_tag="OQQ76_003750"
                     /pseudo
     CDS             complement(1763..3457)
                     /gene="yedQ"
                     /locus_tag="OQQ76_003750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310721.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis regulator YedQ"
     gene            complement(3628..3810)
                     /locus_tag="OQQ76_003751"
     CDS             complement(3628..3810)
                     /locus_tag="OQQ76_003751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2158 domain-containing protein"
                     /protein_id="HCS1970077.1"
                     /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH
                     ETELVPGEGSRSAEEV"
     gene            complement(3889..4806)
                     /locus_tag="OQQ76_003752"
     CDS             complement(3889..4806)
                     /locus_tag="OQQ76_003752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HCS1970078.1"
                     /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN
                     AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF
                     EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVA
                     ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG
                     KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT
                     VLNLILGFIIGGIVVLGVKAVAKIRGQAH"
BASE COUNT         1239 a         1304 c         1157 g         1152 t
ORIGIN      
        1 gactaatggt atttttgtca acatgcgcta acacattctg actggtggtt tcccaccagt
       61 caggctgaat aagattactc tgctttctcc acaaagatac cgtcctgatg ccctgcttca
      121 ttaaagaacc agatgccgag cgggtagtct tccagcgaaa ccaggtacat tgtgccttca
      181 ctaaactcct caactgctag taccacgcca ggacgacgcg gaccgccatc cgttttgact
      241 gttacccgat cattcacctt catcgttttc ctcctgtggc tttgtgccag tgtagaacaa
      301 tttcgttttt ctggcagcgc caggcgcgcg cgagtgctga ttttctcgac ggtctatact
      361 taagagatgc caggcggact taacgactgg cggcaacaac agagtaacgg ttgcgaggaa
      421 agatgatgaa aaccgcaaaa gagtacagcg ataccgcaaa acgtgaggtc agcgtcgatg
      481 tcgatgccct gctggcggcg atcaatgaaa ttagcgaaag cgaagttcat cgcagccaga
      541 acgattctga acacgttagc gtcgatggac gtgaatatca tacatggcgt gaattggcgg
      601 atgccttcga actggatatt catgacttca gcgtctctga agtgaatcgt tgaatgcaca
      661 ataaaaaaat cccgaccctg agggggtcgg gatgaaactt gcttaagcaa gaagcactta
      721 aaaaattcgt tacaccagga aatctgatgt gttcatcacc ttatccgcaa tttttttcgc
      781 tgacaagaaa atattcgcga tatgaatgat taacgctact tatgaataga aatgtgacgt
      841 gcgtcacccc ttggtggctc tggcgtcaac gggatcgctc ccgaaaaaat catctttgat
      901 tatttgtgct gttttgagaa tcatcctggt aaggggagaa ctgcgcgacc atgttttcaa
      961 ttcaacaacc actactggtt tttagcgatc ttgatggcac cctgctggac agtcatagtt
     1021 atgactggca accggctgcc ccctggctca gccgtttacg cgaagcgaat gttcccgtca
     1081 ttctctgtag cagtaaaact tcagcggaaa tgctgtactt gcaaaaaacg ttggggttac
     1141 aaggggtacc actgattgcc gaaaatggcg cagtgatcca gcttgctgaa caatggcagg
     1201 atatagacgg ttttccacgc atcatctcag gtattagcca tggcgaaatc agccaggttt
     1261 taaatacgct acgcgagaaa gaacatttta aattcacgac tttcgatgat gtcgacgatg
     1321 caaccatcgc cgaatggacg ggattaagcc gtagccaggc ggcgctgacg cagctgcatg
     1381 aggcgtcggt aacgctaatc tggcgcgaca gtgacgagcg tatggcacaa tttaccgctc
     1441 gtctgaacga actgggctta cagtttatgc agggtgcgcg cttctggcac gtcctggatg
     1501 cctctgccgg aaaagatcag gccgccaact ggattatcgc gacctatcaa caattatcag
     1561 gcaaacgccc aaccacactt ggcctgggcg atgggccaaa cgatgcgccc ttactggagg
     1621 taatagatta cgcggtgatt gtgaaagggc taaaccgtga aggggtgcat ctgcatgatg
     1681 aggatccggc ccgcgtctgg cgaacgcagc gtgaaggacc ggaaggatgg cgtgaagggc
     1741 tggaccattt tttctccgct cgttaagcgt tatcgctcgc gcatacccga ttacgcccgg
     1801 cctgtttagc gagataaagc cgacggtcag ccagtgactg gagttgttca aaatcataat
     1861 caccggtttc ctcgctgcta cttaccccca acgaggcact gatgcgtatc gtcgtactct
     1921 tagcaatcaa catctctttt tcatttaact tcaggcgaat acgttctgcg acttccgcag
     1981 cctccgtcag actcgcgcct ggcagaatca cacaaaactc ctcaccaccg acccgcccgg
     2041 caacgtcctg cgcacgcaag gaactgctaa ttaatccggc agcatgagaa agaacacggt
     2101 cgcccgcctg atgactaaag cggtcattaa tcgctttaaa atggtcaagg tcgacctgaa
     2161 tgacagaaaa aggatgttgg tgcgtctgac acaatttcgc gagcggacgg gctttttcaa
     2221 acagtgcgcc acgattatat aaacgggtta aggtgtcgtg ccacgcctgc cactgcaacg
     2281 agctttgcag aacatacatg ttgctaacca tccggcgaat cacataccag gagatgagta
     2341 acatggtggt aaagagcgcc cacagcaggg ttaatgcaat gctgatactg ccgaaatcgc
     2401 cgcgcacgcc ttcgcttagc gtatggacgc gcaccagcac accgtcgaaa tggtccagac
     2461 gttcccagct aacatagcga ctgtccatac gaatgccgcc ccgcgtgtca tgttccatcg
     2521 cctgcgccag caaggccagt tcacgaggat caaaaatatt ccctgttgga tggtcaggat
     2581 tggaagaggt caaaaatctc agcttactgt catagagctg atactcacca tcgaggtttt
     2641 tatcgatggc gtttcttaaa aattgctgca tggtacgcac gggaatactc atccccagca
     2701 cgccatacca gtagttatta ctgtctaccg gaacactgac ggtaacctgc ggttcagtat
     2761 tgctggcgtg tttcggttgc gaagtaaacc agcgtaccgc gcggtgacga ttttctcgtt
     2821 gcgaatggcc gataaactag ggttgggtga catagccgta ataacgcgtt ggtacattgc
     2881 gcgtaaacaa ggtcggctgc gtcgaaacgt aaaatccggc acgcgagaca tacatcgcct
     2941 gttcaaccat cgacgaggtg ttgtgcgcca gtcgcagcaa gtaaccaact tccagtgcag
     3001 cggtaatttc attgtcgagg ctttcatttt cgcgagacag gagattcccc tcgctgacta
     3061 atgcatccga tacgccattg actgacaggg tgcgtcgtcg gttgagttca atttgccagg
     3121 cgtgctcgtc gcgatgctgt tcgaactcgg ttacagcatt acgcagtgaa gtgaaatcca
     3181 gtggcgctac gagagcttcg cgcatgccat tacgcaaaaa gatcagtttg tcgacgttat
     3241 actgcaaatg cttatcgagc gcgttggcta cgttttccag atgattacgc gggctggaga
     3301 tataggcatc ttccagcact accacttcac gccaggtcag caaggtggaa aaaagcaata
     3361 ccacgataaa gcagagatta acgacatgac caggccccag gcggcgtgcg atttttttca
     3421 accagctctg gttttccatt tttgtctcgt gctgcaccct gacgactccc aacctgcttt
     3481 tttatgattc tggcataacc tggcgatagc gtaccgcaaa acagcgataa ttttataatg
     3541 gtggcatgat aaaacgcgac tatcattcat tgcaggcatt ggcacaccag gccggaagtg
     3601 atccggcctg gtgttaatga taccctttca aacttcttcc gcagaacgac tcccctcccc
     3661 cggaacaagc tcggtttcat gaaaagcttc ccgcttgacc ccgtaaccgt cataccaacg
     3721 acactcaacc ataccgctgg agtatccggt gacaatcatc cgcgggccgc cctctttaac
     3781 cgtaacttcc tcactaacca taaagctcat actagcctcc ttttttcgag tgaaacttgt
     3841 tcaccttagt tgaagatggc gaattttgca taatagcctg tgcgagtatt aatgtgcctg
     3901 accgcgtatt ttcgctacgg ctttcactcc cagcaccact atgccgccga tgataaatcc
     3961 aagaatcaga tttaaaacag tcggtaatat catcgccacc actgcacttt gctgcccggc
     4021 gaaatgttca atggcgtgat gcagcggcgc aataccatgt accacaatcc cgccgccgac
     4081 aaggaacatc gccagcgtgc cgacaatcga taacgctttc atcagccagg gcgcaatgat
     4141 caataaccct ttacctaatg cctgcatcag cgcgctggat ttttccgcca gccaataccc
     4201 caggtcatca atcttaacga taacccctac cagaccgtag acgcccacgg tcactaccag
     4261 cgcgatgcct gaaagcacca gcacctgatt aagcaacggc gcttcggcca caatccccag
     4321 cgtgatggcg acgatttcgg cagacaatat aaaatcggta cgaatcgccc cttttatttt
     4381 gtccttttca aacttcagcg gatcctgcgc cgccagcttc tccagacgct gctggctctg
     4441 cgccggatct tctttatgtt tacgcgcctc cagcatatgc agcactttct ctactccttc
     4501 aaagcagaga aacgcgccac caatcatcaa cagaggcgta atcgcccacg ggataaacgc
     4561 actgatgatc agcgccagcg gcaccagaat cactttatta atcagcgatc ctttcgccac
     4621 gccccagacc acgggaagtt cccggttggc ccgtacgcct gaaacttgtt gcgcattgag
     4681 cgataagtca tcccctaata caccggcggt tttcttcgcc gccagtttgc ccatcacgga
     4741 gatatcgtcc agtagtgtgg cgatatcatc gagcaacgtc agtaaactac tcccggccaa
     4801 aagcattccc tctcattttt attgttgaag ggtgtaagta tgaagcaaaa ac
//
LOCUS       DAJVUN010000235         4842 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.237, whole genome shotgun sequence.
ACCESSION   DAJVUN010000235 DAJVUN010000000
VERSION     DAJVUN010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4842
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.237"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..275
                     /gene="csgE"
                     /locus_tag="OQQ76_003753"
     CDS             <1..275
                     /gene="csgE"
                     /locus_tag="OQQ76_003753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgE"
                     /protein_id="HCS1970079.1"
                     /translation="GHDFYRAFSDKWESDYTGNLTINERPSARWGSWITITVNQDVIF
                     QTFLFPLKRDFEKTVVFALIQTEEALNRRQINQALLSTGDLAHDEF"
     gene            300..716
                     /gene="csgF"
                     /locus_tag="OQQ76_003754"
     CDS             300..716
                     /gene="csgF"
                     /locus_tag="OQQ76_003754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgF"
                     /protein_id="HCS1970080.1"
                     /translation="MRVKHAVVLLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNS
                     AQAQNSYKDPSYNDDFGIETPSALDNFTQAIQSQILGGLLSNINTGKPGRMVTNNYIV
                     DIANRDGQLQLNVTDRKTGQTSTIQVSGLQNNSTDF"
     gene            743..1576
                     /gene="csgG"
                     /locus_tag="OQQ76_003755"
                     /pseudo
     CDS             743..1576
                     /gene="csgG"
                     /locus_tag="OQQ76_003755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309441.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgG"
     gene            complement(1640..2131)
                     /locus_tag="OQQ76_003756"
     CDS             complement(1640..2131)
                     /locus_tag="OQQ76_003756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 domain-containing protein"
                     /protein_id="HCS1970081.1"
                     /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ
                     GGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLS
                     FVPGTFIGACATFAGQGDWKLVLPSLALGLVFGYAMKNSGLWLAARSAKTAHREQEIK
                     NKA"
     gene            complement(2233..2787)
                     /gene="ycdY"
                     /locus_tag="OQQ76_003757"
     CDS             complement(2233..2787)
                     /gene="ycdY"
                     /locus_tag="OQQ76_003757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone YcdY"
                     /protein_id="HCS1970082.1"
                     /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ
                     DELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPL
                     ADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
                     RTMAPLTRDAISAMWDELEEDSEE"
     gene            complement(2811..3548)
                     /gene="ycdX"
                     /locus_tag="OQQ76_003758"
     CDS             complement(2811..3548)
                     /gene="ycdX"
                     /locus_tag="OQQ76_003758"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding phosphatase"
                     /protein_id="HCS1970083.1"
                     /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM
                     EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE
                     PVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS
                     SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPER
                     ILNVSPRRLLNFLESRGMAPIAEFADL"
     gene            complement(3603..4541)
                     /gene="ghrA"
                     /locus_tag="OQQ76_003759"
     CDS             complement(3603..4541)
                     /gene="ghrA"
                     /locus_tag="OQQ76_003759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415551.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrA"
                     /protein_id="HCS1970084.1"
                     /translation="MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALV
                     WHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEY
                     AVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHWEDFTIGILGAGVLGSKVAQSLQTWRF
                     PLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPD
                     GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHV
                     AAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY"
BASE COUNT         1299 a         1219 c         1135 g         1189 t
ORIGIN      
        1 ttggccatga tttttaccga gcctttagtg ataaatggga aagtgactat acgggtaact
       61 taacgattaa tgaaaggccc agtgcacgat ggggaagctg gatcactata acggtcaatc
      121 aggacgttat tttccagact tttttatttc cgttgaaaag agacttcgag aaaactgtcg
      181 tctttgcact gattcaaact gaagaagcac taaatcgtcg ccagataaat caggcgttat
      241 taagtacggg cgatttggcg catgatgaat tctaaataaa aaattgttcg gaggctgcaa
      301 tgcgtgtcaa acatgcagta gttctactca tgcttatttc gccattaagt tgggctggaa
      361 ccatgacttt ccagttccgt aatccaaact ttggtggtaa cccaaataat ggcgcttttt
      421 tattaaatag cgctcaggct caaaactctt ataaagatcc gagctataac gatgactttg
      481 gtattgaaac accctcagcg ttagataact ttactcaggc catccagtca caaattttag
      541 gtgggctact gtcgaatatt aataccggta aaccgggccg catggtgacc aacaattata
      601 ttgtcgatat tgccaaccgc gatggtcaat tgcagttgaa cgtgacagat cgtaaaaccg
      661 gacaaacctc gaccatccag gtttcgggtt tacaaaataa ctcaaccgat ttttaagccc
      721 cagcttcata aggaaaataa tcatgcagcg cttatttctt ttggttgccg tcatgttact
      781 gagcggatgc ttaaccgccc cgcctaaaga agccgccaga ccgacattaa tgcctcgtgc
      841 tcagagctac aaagatttga cccatctgcc agcgccgacg ggtaaaatct ttgtttcggt
      901 atacaacatt caggacgaaa ccgggcaatt taaaccctac ccggcaagta acttctccac
      961 tgctgttccg caaagcgcca cggcaatgct ggtcacggca ttgaaagatt ctcgctggtt
     1021 tataccgctg gagcgctagg gcttacaaaa cctgcttaac gagcgcaaga ttattcgtgc
     1081 ggcacaagaa aacggcacgg ttgccattaa taaccgaatc ccgctgcaat ctttaacggc
     1141 ggcaaatatt atggttgaag gttcgattat cggttatgaa agcaacgtta aatcgggcgg
     1201 tgttggggca agatattttg ggatcggtgc agacacgcaa taccagctcg atcagattgc
     1261 cgtgaacctg cgtgtcgtca atgtgagtac cggtgagatc ctctcctcgg tgaacaccag
     1321 taagacgata ctttcctatg aagttcaggc cggggttttc cgctttattg actaccagcg
     1381 cttgctggaa ggggaagtgg gttacacctc aaacgaaccc gttatgctgt gtctgatgtc
     1441 ggctatcgaa acaggggtca ttttcctgat taatgatggt atcgaccgtg gtctgtggga
     1501 tttgcaaaat aaagcagaac ggcagaatga cattctggtg aaataccgcc atatgtcggt
     1561 tccaccggaa tcctgacaga taaaaaagca ggaattatca tccggcattt tactgtttaa
     1621 gcgaaagcgt gagtgcccct cacgctttat ttttgatttc ctgctcacgg tgagccgtct
     1681 ttgcactacg agccgccagc cacaggccgc tgtttttcat tgcgtaacca aataccagcc
     1741 caagcgccag cgaaggtaac accagtttcc agtcaccctg cccggcaaac gtcgcgcatg
     1801 cgcctataaa cgtccccgga acaaatgaaa gcagcagctg tttggcctga atacacatca
     1861 gaaacgccac aataccggtt atgacataac cgagaatttc cagatgtggt gccagtgcac
     1921 taccgtaaat aatgaccatc gcccacacca cgccactaag cagggttgca gcggagatcg
     1981 ccagcccttt cagcccacct tgcgggcagg caaagtaggc cgtacagccc aggaagcccg
     2041 cccagcttag taagcccagg gaaacagcca cccatcccca gataccggag agaatgcctg
     2101 ttgtgattgc aatagagaga agtatgttca tgccgcgcat gatagcagaa aacgcggcca
     2161 tgaatgagat cgagcacaca ttttatgcaa caacaaatta tctgttgcag ttatgagtga
     2221 cgatgatcac atttactctt cagaatcttc ttccagctcg tcccacattg cactaatggc
     2281 atcacgggtt agcggtgcca tggtgcgcca gaaaggcgtg gttgcatggg cctccacttt
     2341 gccgaggaac gcaccacacc agggtaacag atactcactg aacagtgttt ccagtgcttc
     2401 gctctcatct tccgttgact gatcttccag ccaggaagcc gcaagcagca atgtgccgat
     2461 gtgatcggct ggcgtatccg ccagtggcat ccctcgttcg gaaagaaaag cgcgcacttc
     2521 cgcttccgtt gcgtcctcaa cccatgcgct acgatatggc ggcacggcac attcatcgcc
     2581 gataaacaac gcattgtaat cggcagagac ttgcgccata tcacagcttt tctgtaaacg
     2641 cgtcagtaac tcatcctgct ccagtggcca gttcgcagcc agtttcccct cacgaatcag
     2701 ggtaaacagc ggcaccagta aaggatcttg cggttggcgg taatagagcg aacccagcac
     2761 acgacagagg atagaaaact cgttcattaa tatatttcca ttactagtaa ttaaaggtct
     2821 gcaaattccg caatcggtgc cataccgcga gattcaagga agttcagtaa gcggcgcgga
     2881 gaaacattca aaatgcgctc tggcggaaaa tctaccgcgt cgaggatttt aagacactct
     2941 tcaaattccc ccatggtaaa cgcggtgtga gaatccgagc ctaatgccac ccaacctcca
     3001 gcatcacgta ccgctgcggc taccgcacga cagttgtctt cactgccctt acgtgagtgt
     3061 aaaaatgaag aattattgat ttccagcgcc acctgatgtt tcgcggctgc ttcagcaacg
     3121 gctttcacat ctatttcata tttgggattt ccgggatggc ttattatatg cacattgccg
     3181 ctggcgatag tggcgatcat cgcttgtgta ttggtcgctt tgtcatgtgg tgcaaaaacc
     3241 ggctcatgaa aaccggcaat aatcagatcc agcgagtcaa acattttacc gctgcaatca
     3301 atttcaccat caacattttt aatgttagct tcgatgccgc gcaggatccc taccccatca
     3361 accactcgcg gccagatacg catgttaatg aagtgccagt gatgcggagc atcttccata
     3421 tccgggccat gatcggtgat cgcaaaaagt ttaatgccct tttgtttggc ctgggcaatg
     3481 taatcactca atgtgctata tgcatgtgtg ctggcaacgg tatgcatatg aaggtcgacg
     3541 ggatacataa ctctctcctg tattcaattc ccgccaagga tagcaggaat cctgatgctt
     3601 tattagtagc cgcgtgcgcg gtcgacttgc ccgcagaccc tctccccttt ttcgagctgg
     3661 gcaatggtgc gagaaatgta ctccacagct tcagcgggac gggtaatcgc ggcgacatgt
     3721 ggtgttatcg tcacgcgtgg atgttgccag agcggacttt caggcggtaa gggttcacga
     3781 ttaaaaacat ccaacattgc gcctttaact ttgccgctat ccagcgccgc gagcaggtca
     3841 tcttccacaa catgaacacc acgcgccagg ttgaggagat acgcgccatc cggtaatttt
     3901 tcgagtaatt gttgattaat aatgccgacg gtttcagggg tattcggtaa caaattaatc
     3961 aatacccgac attggctcag aaatgcagac agttcttccc gtccggcaaa gctttgcacg
     4021 ccaggccacg atttacgggt tcgactccag caacgcagcg gaaagcgcca ggtttgcaga
     4081 ctctgagcaa ctttactgcc cagtacgcct gcgcccaaaa tgccgatggt aaaatcttcc
     4141 caatgatatt caggcagcgg ttgccaatgc gaactatttt gctggatgcg ataatcgtca
     4201 aaacgtcgaa accaatgcag cacctgactg acagcatatt cctgcatttg ctcgcccata
     4261 ccagtatctt ccaggcgaaa aagtggaaca gaagggttca gcatttcagg gtgtgcctgt
     4321 agcttgctca aaatagaatc aacaccggcc ccgagtgcga acaccgcttt aagatcgcgc
     4381 cctgccagca tttcaacagg aggatgccag actaaagcat aatcagcaga gtcattatct
     4441 ccgcttttcc atgctctgac tcttgcctga ggaatagctt tgcgcagtgc ctcaatccac
     4501 cattgggtat cgaacgttgg gtgataaaag atgatatcca tactgactcc cgaaaagcgt
     4561 tgtgcgaaat ttattcgcac ttatcgttat gatctacaaa ggccaccagc ataacaaatc
     4621 cgtggtcggt ggcaaaaaaa gcagatttcg cttattaaaa ccacacattg attgaagttt
     4681 gaataaacgc gcgatttttt caaaaagttt gttgacctca ggtcatgatt tccctaaatt
     4741 agcgcccgtt ccagcaagac aggaacaaca atttggtgag gtgtccgagc ggttgaagga
     4801 gcacgcctgg aaagtgtgta tacggcaacg tatcgggggt tc
//
LOCUS       DAJVUN010000236         4793 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.239, whole genome shotgun sequence.
ACCESSION   DAJVUN010000236 DAJVUN010000000
VERSION     DAJVUN010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4793
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.239"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..800
                     /locus_tag="OQQ76_003760"
     CDS             <1..800
                     /locus_tag="OQQ76_003760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YadA family autotransporter adhesin"
                     /protein_id="HCS1970085.1"
                     /translation="SITNLNNQVTNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGVDA
                     NAQGKDSVAIGSGSIAAADNSVALGTGSVAEEENTISVGSSTNQRRITNVAAGVNATD
                     AVNVSQLKSSEAGGVRYDTKADGSIDYSNITLGGGNGSTTRISNVSAGVNNNDAVNYA
                     QLKQSVQETKQYTDQRMVEMDNKLSKTESKLSGGIASAMAMTGLPQAYTPGASMASIG
                     GGTYNGESAVALGVSMVSANGRWVYKLQGSTNSQGEYSAALGAGIQW"
     gene            1168..2823
                     /gene="lldP"
                     /locus_tag="OQQ76_003761"
     CDS             1168..2823
                     /gene="lldP"
                     /locus_tag="OQQ76_003761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HCS1970086.1"
                     /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS
                     WTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI
                     IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLC
                     LIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWR
                     GIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFR
                     FGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEW
                     VINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPS
                     DAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLG
                     WLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIAC
                     AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP"
     gene            2823..3599
                     /gene="lldR"
                     /locus_tag="OQQ76_003762"
     CDS             2823..3599
                     /gene="lldR"
                     /locus_tag="OQQ76_003762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LldR"
                     /protein_id="HCS1970087.1"
                     /translation="MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVS
                     RNSLREALAKLVSEGVLLSRRGGGTFIRWRHDTWPEQNIVQPLKTLMADDPDYSFDIL
                     EARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHN
                     IVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAM
                     MAHLSFVHTTMKRFDEDQARHARITRLPGEHNEHSREKNA"
     gene            3596..4786
                     /gene="lldD"
                     /locus_tag="OQQ76_003763"
     CDS             3596..4786
                     /gene="lldD"
                     /locus_tag="OQQ76_003763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent L-lactate dehydrogenase"
                     /protein_id="HCS1970088.1"
                     /translation="MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSE
                     VALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIP
                     FTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE
                     DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG
                     GRQLDGVLSSARALPAIAEAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLY
                     ALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAK
                     GNAA"
BASE COUNT         1054 a         1271 c         1302 g         1166 t
ORIGIN      
        1 agagcattac taacctgaac aatcaggtca ctaatctgga tactcgcgtt actaatatcg
       61 aaaacggtat tggcgacatt gtcaccaccg gtagcaccaa gtacttcaag accaacaccg
      121 atggcgtaga tgccaacgcc cagggtaaag atagcgttgc tattggttct ggttccattg
      181 ctgccgctga caacagcgtc gcactgggta ccggttccgt tgcagaggaa gaaaatacaa
      241 tctctgtagg ttcttctact aaccaacgcc gtatcaccaa cgtagctgcc ggtgttaatg
      301 ccaccgatgc ggttaacgtg tcgcagctga aatcttctga agcaggcggc gtgcgctacg
      361 acaccaaagc tgatggttct atcgactata gcaatatcac cctcggtggt ggcaacggca
      421 gtacgactcg tatcagcaac gtctccgctg gcgtcaacaa caacgacgcg gtgaactacg
      481 cgcagttgaa gcaaagcgtg caggaaacga agcaatacac cgatcagcgg atggttgaga
      541 tggataacaa actgtctaaa actgaaagca agttgagcgg tggtatcgct tctgcaatgg
      601 caatgaccgg tctgccgcag gcttatacac cgggtgccag catggcttct attggtggcg
      661 gtacttacaa cggtgaatcg gcagttgctt taggtgtatc gatggtgagc gccaatggtc
      721 gttgggtcta caaattacaa ggtagtacca atagccaggg tgaatactcc gccgcactcg
      781 gtgccggtat tcagtggtaa tgatccatta agttagtgtg actaagggca aacgccaaat
      841 tgcctgatgc gttacgcgca tcaggcaaga taaggcgctc cgggtcaaca atctaagggc
      901 aattctctga tgaggattgc ccttttcttt accagacatc tccccccaca agaattggcc
      961 ctaccaattc ttcgcttatc tgacctctgg ttcacaattc cccaattaaa actcacatca
     1021 atattgccaa tacataacat ttagttaacc attcattgtc attatcccta cacaacacaa
     1081 ttggcagtgc cacttttaca caacgtgtga caaggagatg agcaacagac tcattacacg
     1141 atgtgcgtgg actccaggag acctgcaatg aatctctggc aacaaaacta cgatcccgcc
     1201 gggaatatct ggctttccag tctgatagca tcgcttccca tcctgttttt cttctttgcg
     1261 ctgattaagc tcaaactgaa aggatacgtc gccgcctcat ggacggtagc aatcgccctt
     1321 gccgtggctt tgctgttcta taaaatgccg gtcgctaacg cgctggcctc ggtggtttat
     1381 ggcttcttct atggtttgtg gcccatcgcg tggatcatta ttgcagcagt gttcgtctat
     1441 aagatctcgg tgaaaaccgg gcagtttgac atcattcgct cgtctattct ttcgataacc
     1501 cctgaccagc gtctgcaaat gctgatcgtc ggtttctgtt tcggcgcttt ccttgaagga
     1561 gccgcaggct ttggcgcacc ggtagcaatt accgccgcat tgctggtcgg cctgggtttt
     1621 aaaccgctgt acgccgccgg actgtgcctg attgttaaca ccgcgccagt ggcatttggc
     1681 gcgatgggca ttccaatcct ggttgccgga caagtaacag gcatcgacag ttttgagatt
     1741 ggccagatgg tggggcgtca gctaccgttt atgaccatta tcgtgctgtt ctggatcatg
     1801 gcgattatgg acggctggcg cggtatcaaa gagacgtggc ctgcggtcgt ggttgcgggc
     1861 ggctcgtttg ccatcgctca gtaccttagc tccaacttca ttgggccgga gctgccggac
     1921 attatctctt cgctggtatc actgctctgc ctgacgctgt tcctcaaacg ctggcaacca
     1981 gttcgcgtat tccgcttcgg tgacttgggg gcgtcacagg ttgatatgac gctggcccac
     2041 accggttaca ccgcgggtca ggtgttacgt gcctggacac cgttcctgtt cctgaccgct
     2101 accgtaacac tgtggagcat cccgccgttt aaagccctgt tcgcatcggg tggtgcgctg
     2161 tatgagtggg tgatcaacat tccggtgccg tacctcgata aactggttgc ccgtatgcca
     2221 ccagtggtca gcgaggctac agcctatgcc gccgtgttta agtttgactg gttctctgcc
     2281 accggcaccg ccattctgtt tgctgcactg ctctcgattg tctggctgaa gatgaaaccg
     2341 tctgacgcta tcagcacctt cggcagcacg ctgaaagaac tggctctacc catctactcc
     2401 atcggcatgg tgctggcgtt cgcctttatc tcgaactatt ccggactgtc atcaacactg
     2461 gcactggcac tggcgcacac cggtcatgca ttcaccttct tctcgccgtt cctcggctgg
     2521 ctgggggtat tcctgaccgg gtcggatacc tcatctaacg ccctgttcgc cgcgctgcaa
     2581 gccaccgcag cacaacaaat tggcgtctct gatctgttgc tggttgccgc caataccacc
     2641 ggtggcgtca ccggtaagat gatctccccg caatctatcg ctatcgcctg tgcggcggta
     2701 ggcctggtgg gcaaagagtc tgatttgttc cgctttactg tcaaacacag cctgatcttc
     2761 acctgtatgg tgggcgtgat caccacgctt caggcttatg tcttaacgtg gatgattcct
     2821 taatgattgt tttacccaga cgcctgtcag acgaggttgc cgatcgtgtg cgggcgctga
     2881 ttgatgaaaa aaacctggaa gcgggcatga agttgcccgc tgagcgccaa ctggcgatgc
     2941 aactcggcgt atcacgtaat tcactacgcg aggcgctggc aaaactagtg agcgaaggcg
     3001 tgctgctcag tcgacgcggc ggcgggacgt ttattcgctg gcgtcatgac acatggccgg
     3061 agcaaaacat cgtccagccg ctaaaaacgc tgatggccga tgatccggat tacagtttcg
     3121 atattctgga agcccgctac gccattgaag ccagcaccgc atggcatgcg gcaatgcgcg
     3181 ccacacctgg cgacaaagaa aagattcagc tttgctttga agcaacgcta agtgaagacc
     3241 cggatatcgc ctcacaagcg gacgttcgtt ttcatctggc gattgccgaa gcctcacata
     3301 acatcgtgct gctgcaaacc atgcgcggtt tcttcgatgt cctgcaatcc tcagtgaagc
     3361 atagccgtca gcggatgtat ctggtgccac cggttttttc acaactgacc gaacaacatc
     3421 aggctgtcat tgacgccatt tttgctggtg atgccgacgg ggcgcgtaaa gcaatgatgg
     3481 cgcaccttag ttttgttcac accaccatga aacgattcga tgaagatcag gctcgccacg
     3541 cacggattac ccgcctgccc ggtgagcata atgagcattc gagggagaaa aacgcatgat
     3601 tatttccgca gccagcgatt atcgcgccgc agcgcaacgc attctgccgc cgttcctgtt
     3661 ccactatatg gatggtggtg catattctga atacacgctg cgccgcaacg tggaagattt
     3721 gtcagaagtg gcactgcgcc agcgtattct gaaaaacatg tccgacttaa gcctggaaac
     3781 gacgctgttt aatgagaaat tgtcgatgcc ggtagcactg gcaccggtgg gtttgtgtgg
     3841 catgtatgcg cgtcgtggcg aagttcaggc agccaaagcg gcggacgcgc atggcattcc
     3901 gtttactctc tcgacggttt ccgtttgccc gattgaagaa gtcgcgccag ccatcaagcg
     3961 cccaatgtgg ttccagcttt atgtactgcg cgatcgcggc tttatgcgta acgcgctgga
     4021 gcgagcaaaa gcagcgggtt gttcgacgct ggttttcacc gtggatatgc cgacaccggg
     4081 cgcacgctac cgtgatgcgc attcaggtat gagcggccca aatgcggcaa tgcgccgcta
     4141 cttgcaggcg gtgacgcatc cgcaatgggc gtgggatgtg ggcctgaacg gtcgtccaca
     4201 tgatttaggt aatatctcag cttatctcgg caaaccaacc ggactggaag attacatcgg
     4261 ctggctgggg aataacttcg atccgtccat ctcatggaaa gaccttgagt ggatccgcga
     4321 tttctgggat ggcccgatgg tgatcaaagg gatcctcgat ccggaagatg cgcgcgatgc
     4381 agtacgtttt ggtgctgatg gaattgtggt ttctaaccac ggtggccgcc agctggacgg
     4441 tgtactctct tccgctcgtg cgttgcccgc tattgcagag gcggtgaaag gtgatatcgc
     4501 cattctggcg gatagcggaa ttcgtaacgg gcttgatgtc gtgcgtatga ttgcgctcgg
     4561 tgccgacacc gtactgctgg gtcgtgcttt cctgtatgcg ctggcaacag cgggccaggc
     4621 gggtgtagct aacctgctaa atctgatcga aaaagagatg aaagtggcga tgacgctgac
     4681 tggcgcgaaa tcgatcagtg aaattacgca agattcgctg gtgcaagggc tgggtaaaga
     4741 gttgcctgcg gcactggctc ccatggcgaa agggaatgcg gcatagtcgt ttg
//
LOCUS       DAJVUN010000237         4749 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.240, whole genome shotgun sequence.
ACCESSION   DAJVUN010000237 DAJVUN010000000
VERSION     DAJVUN010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4749
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.240"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(55..950)
                     /gene="yhaJ"
                     /locus_tag="OQQ76_003764"
                     /pseudo
     CDS             complement(55..950)
                     /gene="yhaJ"
                     /locus_tag="OQQ76_003764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312014.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator YhaJ"
     gene            1055..1756
                     /locus_tag="OQQ76_003765"
     CDS             1055..1756
                     /locus_tag="OQQ76_003765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HCS1970089.1"
                     /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN
                     QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS
                     EHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVW
                     LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL
                     VADSPLRALLIDLPV"
     gene            1779..1943
                     /locus_tag="OQQ76_003766"
     CDS             1779..1943
                     /locus_tag="OQQ76_003766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312016.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970090.1"
                     /translation="MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAE
                     TRLAEDEATA"
     gene            complement(2077..3387)
                     /locus_tag="OQQ76_003767"
                     /pseudo
     CDS             complement(2077..3387)
                     /locus_tag="OQQ76_003767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312017.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
     gene            complement(3415..4746)
                     /locus_tag="OQQ76_003768"
     CDS             complement(3415..4746)
                     /locus_tag="OQQ76_003768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026203.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HCS1970091.1"
                     /translation="MEIASNKGVIADASTPAGRAGMSESEWREAIKFDRTDTGWVIMS
                     IGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSV
                     ISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGL
                     VLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLV
                     KNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFF
                     YAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFG
                     VYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTS
                     ICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS"
BASE COUNT         1204 a         1375 c         1132 g         1038 t
ORIGIN      
        1 ttaatcttag aattggggcg atatttcgcc cctttttatt aacaataata aatattattt
       61 tccgctaaaa agtttgggaa tttcccgcag acaccaggat ttcgcttccc ccatactgtc
      121 acgacgccag gccataataa tatcgatctc gctggtcgat tccgggctga cgacacgcaa
      181 ccgcccttcc gcaatatctt tttcgaccat cggatacggc atcgtcgcca cgccaagccc
      241 cgccagtaat gcctgacgtt tatcttcaat cgtgctcacc gttaagcgcg gctgtttgtc
      301 cagcagctgt acggtcaaca ccgggcgctc acgagcggta tccgctaccg caattccacg
      361 atatttcacg cgcgtcactt cagataacgg ttccggctcc tgatgaatcg ggtgatcagg
      421 cgcggcaacg tagacgttca ttaaggtata gagcttgcgc gagttgatct ccgacgagga
      481 acgaaaatgc atatccggcg cgataacgat atccgccccc cctgctccag tcgttcccac
      541 gcccccgcca gcacttcggt gatgattgcc agttgggtat tggcttttgc cgccagtttg
      601 tcgattaacg ggaaaaaggc aggtgtcggt accagtgcct cggtcacaat ggtgagatgc
      661 gtttcccaac cgcgcgcgag ggcttccgca tcggtagtca gtttatctgc tgcttccagc
      721 aaaacgcgcc ctcgctccag caacatcctc ccgacattgg tgaatttggt gcgatggccc
      781 gagcggtcaa acagcaccac atccagctct tcttccagtt tttgcatggt gtagctaagt
      841 gcggaaggca cgcgtcccag ctcatccgcc gccgccgcaa aactgccccg gcgatcgatc
      901 gcatccataa cccgtagtgc ttccagcgtt aatgcccttt ctttggccat ttcgttctca
      961 ttcaggaaat ttgaacatac cgggcagaat atctggctaa caatgtagcg tccagcccct
     1021 taccataaaa ggaagtaaag agaggtcaag aattatgatt actacccgaa ctgccaggca
     1081 gtgtggacaa gcagactacg gatggttgca ggcccggtat actttttcct ttggacacta
     1141 cttcgacccg aaattgttag gctatgcctc cctgcgtgtg cttaaccagg aagtgctggc
     1201 cccaggtgcc gcctttcagc cgcgaaccta tcccaaagtc gatattttaa atgtgattct
     1261 ggatggagaa gcagagtatc gcgacagcga aggcaatcat gttcaggcca gcgccggtga
     1321 ggcgttgctg ctctctaccc agccgggtgt cagctacagc gaacacaatc tcagcaaaga
     1381 caaaccgtta acacgaatgc agctttggct ggacgcctgc ccgcagcgag agaatccgct
     1441 gattcaaaaa ctggcgctta atatgggcaa gcagcaatta atcgcctcgc cagagggtac
     1501 gatgggaagc ctgcaattac gccagcaagt gtggctgcac catatcgtgc tcgacaaagg
     1561 cgaaagtgcg aatttccagt tgcatgggcc acgcgcgtat ttgcaatcga ttcacgggaa
     1621 atttcatgcg cttacgcatc atgaagagaa agcggcgctg acctgcggtg atggggcgtt
     1681 tattcgtgac gaggctaaca ttacgctggt tgccgattcc ccactgcgcg ctttgctgat
     1741 agatttgcct gtctagttgt ttttacaggg agatgatgat gagtaaaaaa tcggccaaaa
     1801 agcgccagcc agtgaagccc gtggtggcga aagaacctgc tcgcaccgcc aaaaattttg
     1861 gctatgaaga gatgttgagc gagctggaag ccatcgtcgc ggatgctgaa acgcgtttag
     1921 ccgaggatga agctaccgcg taaagacagg ttgccggatg cggcgaaaac gccttatccg
     1981 gcctacaaaa tccaacaaca ttaacgaatt aaacaacccg taggccggat aaggtgcgcc
     2041 agcatcgcat ccggcacaat actcaaaacc tggcgtttat ctggccttgc tcgccataat
     2101 ctcgataatc tgccgatccg tttgctgcat cgaatggctt gctaacgcac acaggttggc
     2161 aatctactgc tcaacatcat gcgccacgat cccttcattg ccggtcacgg cggtatcatc
     2221 cagcgccatt aacaccgctt tccacgcagc cgaagcactg gtcgaaacct tcatcgcgca
     2281 gctgttcgac gcaccatcgc aaatcatgcc gctgacatcg ccgatcatac tgctgatcgc
     2341 catcgagata gtttcataac gcccatccac cagccatgcc atcccggcgg cggcccccat
     2401 tgctgcggtc gttgcggcac aaagtgcaga caaacgcggt aactggttat ggatgtaaat
     2461 tgcgctcaaa tgagaaagca tcagcgcacg cgccagtcgt tcatcatccg ctccgaagtg
     2521 ttctgctaca accaccacag acattgttgc ggtgatcccc tggttacccg agccggagtt
     2581 actcatagcc ggaagcgtag cgccgcccat acgcgcatcg gatgccgcgc tggtacgaat
     2641 cacaatggat gaagagagat ctttcgccag caaaccgcgc tcgcactgtt tttccagcgt
     2701 cgcgccaata tgcagccccc acttaccgct caaaccttcc tgcgataacg cacaatttag
     2761 cttcgcggaa tcgagaataa agcggatcgc cgcaaacggg acttcattga cgaacttcag
     2821 gatctcagcc agcgtcgttc tggaaagcac cgtcagcgga gactcttgct cgccctctgc
     2881 cacacacgcc tgctgggtaa acaccacact attgtgcgtc tcaatatgca caatgttggt
     2941 atgcccgccg acgatggtga cacacgccca cttctcaccg ttccagactt tggcgcgtga
     3001 gaagaggatt tcattgcaag gttcctggat cttaacggag actttccccg ccgccagcag
     3061 tgctttggca tcggcaattg cctgcgcagt tgcgtctttc agcacttcca gcccggcgtt
     3121 ggcatttcca cctaacgccc ccagcgccgc cgcaatcggc agccccacca ttcccgtgcc
     3181 gggaacggtg acgcccagac cgttcttcat cagatttggc gaaacccagg cttctacacg
     3241 ttcaaccgga ccttccagtt ctgccgcagc aaccgccgcc gccagcgcca gtgaaatcgg
     3301 ttcagtacat cccagcgccg gttttacttc ctcctgaacg gcgaggatgt aacgctgcca
     3361 taacggattt aaagtcgaat caaacatatt aaaaacctta aaatttcagg taaatcaaga
     3421 aaatgccagg aacggagaaa cacaaagcaa caaaccagtg acgataatca ggtacagaga
     3481 catccctttg tatttgtgca atgccggtac tttgtaaacc agccacgccg ggatcaggca
     3541 ccctaccatg ccgaaaatcg ggctacagat agaggtgaag ctcaacaccg gtgcgttcag
     3601 tacgatggcg ctccaggcca gcaaaatggc gaaaatcatg atgccgcgct gaacaagatt
     3661 ttcgttaatc ttctcggcag gcatcttgcg acgcaggatg ttcattacga tcccttgcgt
     3721 tgcttcgcga aagcctaaat agacgccaaa gaatgcagtc atgacagcaa agatattgag
     3781 aatgacgctg accactttca cccacgctgc gccgtcaccg ctaataaact gtgcggcaat
     3841 cgccagcgcg gaaatattct gctcgtaggc ttttaccgct tcgtcatgtc ccatcgccag
     3901 cgtgaacgac acggcgtaga aaaagacggt gacaaataaa atgccaaacg cgatattcat
     3961 tgcccgcaat gctttatgcc gcgccacttc aattgatttt tcccgcgagc gataagagat
     4021 caccataggg cttaacgtct ggataaacag aatcgacgtc agggtaaacg gcagcgtaat
     4081 aatggcgttt ttcaccagca gccccagcgg cggtagcgaa ccgacgttat acagatgcca
     4141 cattcccacc atcgacacgc ccagcgcagc gactaccagc agcttggtca gcaccatgcc
     4201 ggtcgaaatt ttgaataaca atttctcgcc gcgtgaagag atcgccacca gaatgcaaat
     4261 cagtaccaga ccataaaagg gactgtctga cagcaaccct tccgtcacgc cgaaggtatg
     4321 cagataggaa gcactatcgt tggtgatggc ggtggaatag acgaacatcc aaatcaccag
     4381 cattacgaaa tagagcgcac ctaacaggat gccccagttt ttacctaaat aaccgctaat
     4441 gacactcggg taatctttac attctggtga ttctgccagc gtattaataa acaaccgctg
     4501 aaacagatac attgccgggt aaccaatcac cgatgagagc aaaaataccc acaatcccat
     4561 caaaccgacc tgcaccggga gaaaaacaat ccccgcgcca atcgccatcc cgatactcat
     4621 aatcacccag ccggtgtcag ttctgtcgaa tttgatcgct tctcgccact cgctctcact
     4681 cattccagca cgacccgccg gggtcgaagc gtctgcaatg acgcctttat tcgatgcaat
     4741 ttccataat
//
LOCUS       DAJVUN010000238         4656 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.241, whole genome shotgun sequence.
ACCESSION   DAJVUN010000238 DAJVUN010000000
VERSION     DAJVUN010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.241"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..743)
                     /locus_tag="OQQ76_003769"
     CDS             complement(<1..743)
                     /locus_tag="OQQ76_003769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CSS-motif domain-containing protein"
                     /protein_id="HCS1970092.1"
                     /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ
                     RVVQFANHAVEELDKVLLPLQAGSEVLLPLIALPCSVAHLPLRKQAAKLQTVRSIGLV
                     QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN
                     AGVMEMINIDLLTAMLLEPQLQQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS
                     SQRFPFTINVNGPGATALAWHYLPTQLPLA"
     gene            complement(874..2238)
                     /gene="sdaA"
                     /locus_tag="OQQ76_003770"
     CDS             complement(874..2238)
                     /gene="sdaA"
                     /locus_tag="OQQ76_003770"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCS1970093.1"
                     /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR
                     VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEEHERLLLAQGR
                     HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD
                     AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA
                     CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK
                     VQCD"
     gene            complement(2422..3000)
                     /locus_tag="OQQ76_003771"
     CDS             complement(2422..3000)
                     /locus_tag="OQQ76_003771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HCS1970094.1"
                     /translation="MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQP
                     GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASVIAAALREAEEEVAIPPSAVEVIGVLP
                     PVDSVTGYQVTPVVGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS
                     HRVWLSWYEQYFVWGMTAGIIRELALQIGVKP"
     gene            complement(3004..4365)
                     /gene="pabB"
                     /locus_tag="OQQ76_003772"
     CDS             complement(3004..4365)
                     /gene="pabB"
                     /locus_tag="OQQ76_003772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 1"
                     /protein_id="HCS1970095.1"
                     /translation="MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS
                     RFDIVVAEPICTLTTFGKETIVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF
                     QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV
                     NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRF
                     HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT
                     LPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF
                     PAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG
                     SIGYLSFCGNMDTSITIRTLTAINGQIYCSAGGGIVADSQEEAEYQETFDKVTKILRQ
                     LEK"
     gene            4439..4618
                     /locus_tag="OQQ76_003773"
     CDS             4439..4618
                     /locus_tag="OQQ76_003773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HCS1970096.1"
                     /translation="MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN
                     HSGERIVARFEDEDE"
BASE COUNT         1167 a         1189 c         1213 g         1087 t
ORIGIN      
        1 gccagcggta attgtgttgg aagatagtgc catgccagcg ccgtagcccc cggaccatta
       61 acgttaatgg taaaaggaaa gcgttgcgaa gaaacctgat agttttcatt gtcttcaggt
      121 tgcggaaggg aatctaccag cccattacca tagagcaaat gccgtttgtc caccgtcagg
      181 ctggcgctac tgatttgctg cagttgtggc tcaaggagca ttgccgtcag taagtcgatg
      241 ttaatcatct ccatgacccc agcattgcta ctgcccgctg caggcgtcca ttgaatcaaa
      301 accggactgc ctttaatcag ggcacggtcg atcgtcaggc gtaaaagtgg ttgcggtgca
      361 ggaagttcag ccagaatgtc cacgacgggc acattgcgat aaccaaaaat gctggagcaa
      421 tagagtgtgc cgtcttgcac caggccaatg gatcgcacag tttggagttt tgccgcctgt
      481 ttacgtaatg gcaaatgggc gacagagcag ggcagggcaa tcagcggaag caagacttcg
      541 ctacctgcct gtaggggaag cagtacttta tctaattcct ctacagcgtg attggcgaat
      601 tgtactaccc gttgttgatt taagttacgc tgtgaaataa atcgcacgct cagggtcgaa
      661 gcgagcgtaa cgagtgcgca aatcgtacaa acaatcattc gattacgtcg ataggtttta
      721 atgatccgtt gtgctttttg catgcgggcc accctgtaag cgtatggcga caaacgcctg
      781 acgcaacagt agatgtgtag tggggaatat tacagcagac gagaaagcgg gtataaattc
      841 gcccatccgt tgcagatggg cgagtaagaa gtattagtca cactggactt tgattgccag
      901 accaccgcgt gaggtttcgc ggtatttggc gttcatgtcc ttaccggttt cgtacatcgt
      961 ttcgatgacc ttatccagcg agacgcgcgg tgcactggtg cggcgcagag ccatccgtgc
     1021 ggcgttaatc gccttcacag aggcaatggc attacgctca atgcacggca cctgaacctg
     1081 ccctgcaacc gggtcgcagg ttaaaccaag gttgtgttcc atgccaattt ccgccgccac
     1141 gcaaacctgt tccgggctac cgcccagcag ttctgcaaga cccgcagcag ccattgaaca
     1201 ggcaacaccc acttcgccct ggcaaccaac ttccgcaccg gaaatagagg cgttcatttt
     1261 atacaatgca ccaatcgcgc ccgctgccat aaagtaacgg gtatagatgt ccgggctgac
     1321 cgattcaata aagtggtcat agtaagccag cactgccgga acgataccgc aggcaccgtt
     1381 ggttggcgca gttaccacac gaccaccggc ggcgttttct tcgttaactg ccagcgcaaa
     1441 catgtttacc cagtcaatga cattcatcgg atcgttagac agtttatcgc tggaaaccag
     1501 catccggcgc agggcagacg cacgacgtgg cacgcgcagc gggcctggca gtacaccttc
     1561 ggtgttcatc ccgcgatcga tacatgcctg catggtttgc cagacatgcg cgaaatactc
     1621 gtcgatctct ttcttgctgt gcagcgccag ttcgttctgc atagcgagac ctgacagcga
     1681 atagccggtt tcattacagt acgcgagcag ttcggtggca gatttgaacg gatacggcac
     1741 gcttacttcg ttggcagcat cctgaccaaa gtgttcttca tcgacgataa aaccgccgcc
     1801 gatggaataa taagttttgc tgtagacgac ttcatcgccg ttataggcgt ggatttgcat
     1861 accgttttca tgcagcggca ggttgccgtt atgaaaacgc atcccgttgt cgcgcgggaa
     1921 atccacttca tgccgtccct gtgccagcag cagacgttcg tgctcttcta cgtcgcgaat
     1981 aaaaccggga atactgtcga tatccacggt ggcaggttcg ttacctgcaa gacccataat
     2041 aatggcgata tcggtgtggt ggcctttacc cgtcagcgac agtgaaccat aaacgtccac
     2101 ggcaacgcga gtaacgctat ccagtaagcc tttttcgacc agatcatcga cgaactgttt
     2161 acccgccttc ataggcccta cggtatggga agatgaggga ccaatcccca ccttaaacat
     2221 gtcgaataga ctaatcacga taatactcct gacaaggtga ctggacttcc agtaacgaac
     2281 taataacagc gcatagtgta agagggaacg cggcgactgg cttaactatt cacatgaatt
     2341 aaactaatca aaaaccgcga tttaactaat attgcgatga ttgtctcaag tagtgttttg
     2401 tagatgtaaa gataagtata gtcagggttt cacaccaatt tgcagcgcca gctcacgaat
     2461 tatgcctgcg gtcattcccc atacaaaata ctgttcgtac caggacagcc atacccgatg
     2521 tgaatcgcca cggcggtaga tatctaaagg gtgataacga cccagatgta atgcctgggc
     2581 gagcggcatt tcaaacaccg ccgagacttc atcttcactg gcgcgatacg gcagatcggg
     2641 tgggataatg ccgaccactg gggttacctg atagccagtt acgctatcga cgggcggcag
     2701 cacgccgata acttcaacgg cggaaggcgg tatagcgacc tcttcttcag cttcgcgcag
     2761 cgcggcggcg ataactgatg cgtccgtgtc atcgactgca cctccaggga atgccacttg
     2821 tccagcgtgt ttacgcagat gaattgaacg ctgagtcagc aacaaccccg gttgcggtcg
     2881 acggacgatg gggattaaca cggcagcctg acgatgattt agggtttccc ggttaatttg
     2941 cgggcgcaaa agttgaaagc gagataaaaa atcatcaagc gtcaggctac ggtattccac
     3001 gtcttacttc tccagttggc gtaatatctt agtaacttta tcaaaagttt cctgatattc
     3061 cgcttcttcc tggctatcgg cgacaattcc accgcccgca gagcagtata tttgtccgtt
     3121 aatggcagtc agcgtgcgga tagtaatgct ggtatccatg ttgccgcaaa agctcaaata
     3181 gccaatgctg ccgcaccagg cattacgtcg ctgcggttcc agttcgtcga taatttccat
     3241 agcccgtact ttcggagccc cggttattga gccaccagga aaagctgcgc gcagcagatc
     3301 gctggcgtgt aactgttctg gtagtcgcgc cgttatagtg ctgaccagat gatgcacggc
     3361 agggaagggt tccaccacga agagctctgg tacttttacc gaaccggcta cggcaacacg
     3421 accgatatca ttacgcatta aatcgacaat catcagattt tcggcacgat ctttcgctga
     3481 gttcgccagt ttttctgctt gtttgctatc ttcctgagga tcgggcaggc gtggtagcgt
     3541 gcctttaatc gggcgggtct ggatttcact attatcacaa agaataaacc gctctggcga
     3601 aaggcttaaa attgcaccct gttcaagacg taaaaaagcg ctaaatggcg cgcggttggc
     3661 ctgattaagc tgaaggaatg cctgccattc atcgccagaa taggtcgcat gaaaacgctg
     3721 ggcgagattc acctgatagc aatcaccgct gtgcagatat tcctgtacct ggcgaaattt
     3781 ttcgccgtac tgctcgcggg tcatattgga ttgccagtcg gaagtgagcg tgaaatcttc
     3841 ctgcggcgag aattgctggc tttccagcca ggcccgacgg gcattgacat cattatgact
     3901 cagcaaagaa actgtatgac gctggtggtc gacaatgagc gcccaatcgt agatacccac
     3961 tgccatatcc ggcagaacga tatcttgttc cgcaatttct ggcagtgact caaaacggcg
     4021 gcccagatcg tagccaaaca accccagtgc gccgccctga aatggtaaat cttcgttatg
     4081 cgttgggcga atgtctgcgc gatccagcac ctgctggagc acctgtagcg ggtcatcagt
     4141 ggtcgttgtg cgtttttcgc tttcactaac aatggtttct ttaccgaaag tggttaaagt
     4201 gcaaatcggc tcggcgacca caatatcaaa gcggctatac ggatgatcgg catagccgga
     4261 gtgtaaaagc atcgcccacg gcaggtggct taagcgggag aaataaaatt cagcggcgtc
     4321 ctgacgccag ggtaaagtaa tcacagcggg agataacgtc ttcatcagtc ctgactctac
     4381 tggctatgtg ccgggtagca tgaaataatt agcgctaaca atttagcagg agttaacaat
     4441 gtttgcaggt ttaccttcac tcacccatga acagcagcaa aaagctgtcg agcggatcca
     4501 ggaactgatg gcacaaggga tgagcagcgg ccaggcaatc gcgctggtgg cagaagagct
     4561 gcgtgccaac cactccggtg agcgaatcgt ggcgcgtttt gaggatgaag acgagtaaca
     4621 cactaatccg tatcgatttc gttatagaag ccgatg
//
LOCUS       DAJVUN010000239         4643 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.242, whole genome shotgun sequence.
ACCESSION   DAJVUN010000239 DAJVUN010000000
VERSION     DAJVUN010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4643
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.242"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..917
                     /locus_tag="OQQ76_003774"
     CDS             <1..917
                     /locus_tag="OQQ76_003774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001370218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970097.1"
                     /translation="FLRLDFLGYNAQIIQRSDNTCELTINEPLKNQEISTGNINVNCP
                     LKDIYNEIRRLNVIFSCGTGDIVDLSSLDLRNVDLDYYDFTDKHMANTILNPFKLDST
                     NFTNANMFQVNFVSSTQNATISWDYLLKITPVLISISDMYSEEKIKFVESCLNELGDI
                     TEEQLKIMRFAIIKSIPRATLTDKLENELTKEIYKSSSKINNCLNRIKLPKMKEFSSK
                     KIYDYIDIIIEDYENIKENAYLVVPQINYTMDLNIEDSSSEELIPSRKTKILRTMALK
                     SKNITHMKHITQGIYILPERNIRMITTF"
     gene            complement(1316..1692)
                     /gene="rnpB"
                     /locus_tag="OQQ76_003775"
     ncRNA           complement(1316..1692)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="OQQ76_003775"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1725..2870)
                     /gene="garK"
                     /locus_tag="OQQ76_003776"
     CDS             complement(1725..2870)
                     /gene="garK"
                     /locus_tag="OQQ76_003776"
                     /EC_number="2.7.1.165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 2-kinase"
                     /protein_id="HCS1970098.1"
                     /translation="MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG
                     GEGTVEAMIAATQGSERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAE
                     KRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNE
                     IGFGGGSLNTLNDIDISGLNPRLKDCVIRVACDVTNPLVGDNGASRIFGSQKGASEAM
                     IVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTAL
                     NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVH
                     QHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG"
     gene            complement(2967..3857)
                     /gene="garR"
                     /locus_tag="OQQ76_003777"
     CDS             complement(2967..3857)
                     /gene="garR"
                     /locus_tag="OQQ76_003777"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HCS1970099.1"
                     /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAA
                     GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGSVLIDMSSIAPLA
                     SREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV
                     HTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD
                     AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGT
                     ADHSALACYYEKLAKVEVTR"
     gene            complement(3887..>4643)
                     /gene="garL"
                     /locus_tag="OQQ76_003778"
     CDS             complement(3887..>4643)
                     /gene="garL"
                     /locus_tag="OQQ76_003778"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HCS1970100.1"
                     /translation="FPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGE
                     HAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAE
                     QAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIA
                     ATEGVDCIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADA
                     RRYLEWGATFVAVGSDLGVFRSATQKLADTFKK"
BASE COUNT         1200 a         1247 c         1017 g         1179 t
ORIGIN      
        1 cgtttcttcg tctggatttt ttaggttata acgcccaaat tattcaacga tcggacaata
       61 cctgcgaact taccattaat gaaccgttaa aaaaccagga aatatctaca ggcaatatca
      121 atgttaattg tccattaaaa gatatttaca atgaaatcag gaggttgaac gtaatcttta
      181 gttgtgggac tggagatata gttgatctat cctctctgga cttacgtaat gtcgatttag
      241 attattatga tttcacagat aaacatatgg ctaatactat tctaaatcct tttaaattgg
      301 attcaacaaa ttttactaat gccaacatgt ttcaggttaa ttttgttagt tcaacacaaa
      361 acgccacaat ctcctgggat tatttactaa aaataacgcc tgttttaata agtattagcg
      421 atatgtattc tgaagaaaaa atcaagtttg tcgaaagttg tttaaatgag cttggggaca
      481 ttaccgaaga acaattaaaa attatgagat ttgcaattat aaaatctata ccaagggcaa
      541 ctcttacaga taaattagaa aatgaattaa caaaagaaat atataaaagc tcatcgaaaa
      601 tcaacaattg cttgaacaga attaaattac caaagatgaa agaattctca tcaaaaaaaa
      661 tatatgatta catcgatata atcattgaag attatgaaaa tatcaaagaa aatgcttatc
      721 tggtcgtccc ccaaattaat tatactatgg atttaaacat agaagactcc agctcagaag
      781 agttaatacc ctcgagaaag acgaaaattc ttcggacaat ggctttgaag tcgaagaata
      841 taacgcatat gaagcatata actcagggaa tctatatttt accagagagg aatatacgta
      901 tgattacgac cttttaaatg caatatagac ttaataactt cttacaaaat ctataattaa
      961 taccgtagat attcattcat cttaccctgt gcaccaaaag caaaaactca ctgacgcggg
     1021 tttgaaactg atggcaaccg caaaaatgcc tgatgcgcta cgcttatcag gcctacgcca
     1081 tctctgcaat atattgaatt tgcgtgcttt tgtaggcagg ataaggcgtt cacgccgcat
     1141 ccggcatgaa taaagcgcac tcaacaatct gaaacccgcc ggaacggttt attacgtaca
     1201 tcaggtgaaa ctgaccgata agccgctttc ttttgggtat agtgtcgtgg acagtcattc
     1261 atctttctgc ccctccaaaa gcaaaaaacc gccgaagcgg gtttttacgt aaatcaggtg
     1321 aaactgaccg ataagccggg ttctgtcgtg gacagtcatt catctaggcc agcaatcgct
     1381 cactggctca agcagcctac ccgggttcag tacgggccgt accttatgaa cccctatttg
     1441 gccttgctcc gggtggagtt taccgtgcca cggactgtta ccagccgcgc ggtgcgctct
     1501 taccgcaccc tttcaccctt acctgatccc gcttgcgcgg gccatcggcg gtttgctctc
     1561 tgttgcactg gtcgtgggtt tcccccccag gcgttacctg gcaccctgcc ctatggagcc
     1621 cggactttcc tcccctccgc ccgtctcccc cgaagaggac gacgacgaag cggcgactgt
     1681 ctggtcagct tcggcgcgca gtatagaggg tttgcgcgcc cttgtcaccc cgcgttgcgc
     1741 attccaatcg ccagtgtcgc ggcgatatta cgtgaagcac ggcagatatt gtcataagcc
     1801 ccgcggaatg cttcgtccaa cgtacctatg ctggtcaata cgctgaagac cgcatcaatg
     1861 ccatgctgat gtacaacgcc aacatcatcg gtcaggctac ccgcaatgcc aatcaccggt
     1921 ttatggtact tcttcgccac gtttgcgaca ccaatcggta ccttgccgtg aatactctgg
     1981 ctgtcaatac gcccttcacc ggtgatcacc agcgtacaat cgtgaatatg ttcttccaga
     2041 ttcagcgccg tagtgacgat ttcaatacca cttttcagtt ccgcaccaag aaacgccatc
     2101 agcgccgcgc ccataccgcc cgcagctcct gcgccgggga catctttcac atcaacatgc
     2161 agcgcttttt taatgacctc ggcatagtga gagaggttat tgtccagctc aacaatcatc
     2221 gcttcactgg ctcccttttg tgagccaaag atgcgcgatg cgccgttatc gcccaccagc
     2281 ggattggtga catcacaagc gacgcgaatg acgcaatctt ttaagcgcgg attgaggccg
     2341 gaaatatcaa tatcattcag agtattaaga ctaccgccgc caaaaccaat ttcattgccg
     2401 ttggcgtcgc ataatttcgc ccccagcgcc tgtaccatgc ctgcgccgcc atcatttgta
     2461 gcgctgccgc caatgccgat aataatgttt gtcgcaccgc tctccagcgc ctgcaggatt
     2521 aactcgcctg tgccgcgtga agtggtcacg agtggatcgc gtttttccgc aggtaccagc
     2581 tccagcccac tggccgccgc catttcaata aacgcggttt tgccatcgcc ggagatcccc
     2641 caactggcat tcactttctc gcccaacggc cctgtaaccc aggcgtgacg ttcggaaccc
     2701 tgggtggctg caatcatcgc ttccaccgtt ccttcgccac cgtcggcaac cggaacagaa
     2761 acgtactgtg catcaggaaa aatttcccga aatccttttt ctatcgcctg cgcaacctcg
     2821 ctggcagata aactttcttt ataagagtct ggggcgatta cgattttcat acctatgcct
     2881 gttaccacat gacgccggag ggcgtttctc ttattcggcg tggattccag gcccggattg
     2941 caatacgcca tccgggcacg acgtcattaa cgagtaactt cgactttcgc cagtttttcg
     3001 tagtagcacg ccagagcgct atgatccgcc gttcctaaac catctgcacg cagtgcctgc
     3061 atcatctcca taaccgcagc tgtgagcggc agttgcgcgc cgacgccgtg agaagtatcc
     3121 agcgcattcg ccagatcctt aatatgcaga tcaatgcgga agcccggctt gaagttgcgg
     3181 tccatcacca tcggcgcttt ggcatccagc acggtactgc ccgccagccc accgcgaatt
     3241 gcctgataaa ccaggtccgg gttaacgccc gctttagttg ccagcgttaa cgcttctgac
     3301 atcgcagcaa tattcagcgc cacaatgacc tgatttgcca gtttggtgac gttacctgca
     3361 ccgatttccc cggtatgcac cacggaaccc gccatcgctt tcatcaaatc atagtatttg
     3421 tcgaaaatag ccttgtcgcc gcccaccatc actgacagcg taccgtcgat ggctttcggt
     3481 tcaccgccgc tcaccggagc atccagcata tcaatgcctt tcgctttcag cgcttcgctg
     3541 atttcacggc ttgccagcgg tgcgatagaa ctcatatcga tcaataccga acctggcttc
     3601 gcgccttcaa taatgccatt ctcacccagc gccacctctt tcacatgagg ggagtttggc
     3661 agcatggtta tgatgacgtc gcactgttca gcgatcgctt tagccgtaga cgctgtttct
     3721 gcacctgcag caatcacgtc agcaatagct tctgggttac ggtcagcaac caccagcgag
     3781 taacctgctt tcagaaggtt tttactcatt ggtttaccca taatccccag gccaataaaa
     3841 ccaactttca tagtcatatc aatcatctct cttgttgcgg tggtggttat tttttaaagg
     3901 tatcagccag tttctgagtg gcagagcgga agacgccaag atcgctgccg acagccacaa
     3961 acgtcgcgcc ccattccaga taacgacgcg catcggcttc gaccggcgcg agaataccgc
     4021 tgggtttgcc gtgcgcactg gcacggttaa aaatatgctg aattgctttt tgtacatccg
     4081 gatgcgaggc attgccgaga tggcccaatg ccgcagccag atcgctgggg ccgacgaaga
     4141 tacagtctac accttcggta gcggcaatag catcgacgtt atctacgccc tgctgacttt
     4201 ctatctggac cagaatagtg atgttcttgt tcgactgagc gaaataatcc gccacggtgc
     4261 caaacatatt ggcgcggtga gaaacggaga cgccgcgaat gccttccggc gggtaacgag
     4321 ttgatgccac cgcctgctct gcttcctctt ttgtttctac aaaaggaatc aggaagttat
     4381 agaaaccgat atccagaaga cgcttaataa ttaccggctc gttggtcggc actcgcacta
     4441 ctggcgcgct ggcgctgcct ttcagggcca ttaactgcgg aataaacgtg gaaatatcgt
     4501 ttggcgcatg ttcgccatcc agcaccagcc agtcaaaccc agccaaacca agaacttcag
     4561 tgctaatcgg gttagagagt gctgaccagc aaccaatttg tacctgtttc gcagccagtg
     4621 cggctttgaa tttattcggg aaa
//
LOCUS       DAJVUN010000240         4640 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.243, whole genome shotgun sequence.
ACCESSION   DAJVUN010000240 DAJVUN010000000
VERSION     DAJVUN010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4640
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.243"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..429
                     /gene="speG"
                     /locus_tag="OQQ76_003779"
     CDS             <1..429
                     /gene="speG"
                     /locus_tag="OQQ76_003779"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HCS1970101.1"
                     /translation="FLLTTSHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQI
                     IISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFTVEGEL
                     MHEFFINGQYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ"
     gene            complement(432..1142)
                     /locus_tag="OQQ76_003780"
     CDS             complement(432..1142)
                     /locus_tag="OQQ76_003780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416102.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfC family lipoprotein"
                     /protein_id="HCS1970102.1"
                     /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRG
                     PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET
                     LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
                     NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG
                     VKPAVERVYTIKNTIDYY"
     gene            1250..1555
                     /locus_tag="OQQ76_003781"
     CDS             1250..1555
                     /locus_tag="OQQ76_003781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
                     /protein_id="HCS1970103.1"
                     /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE
                     SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSANVSAPAQSTQDGAPAEPQ"
     gene            1754..4180
                     /locus_tag="OQQ76_003782"
     CDS             1754..4180
                     /locus_tag="OQQ76_003782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HCS1970104.1"
                     /translation="MSKNDRMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRSAAATV
                     QQASEKVIWGACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSI
                     RRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYS
                     SGIVGGNMTRSSPSASAVKRLMNCYGCSLNQYGSYSTEQISCAMPYTYGSNDGNSTTD
                     IENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWL
                     PIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGE
                     GDDNTAKTPQWASQITGIPVDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIA
                     MLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSISCFSWTDAIDHGPQMTA
                     IRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTS
                     SAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKR
                     LGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYK
                     AFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPER
                     RTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINPIDAQKRGIANGDMVRVFNHR
                     GEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGCVNTLTTLRPSPLAKGNPQ
                     HTNLVEIEKI"
     gene            4241..>4640
                     /locus_tag="OQQ76_003783"
     CDS             4241..>4640
                     /locus_tag="OQQ76_003783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416105.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HCS1970105.1"
                     /translation="MKIHTTEALMKAEISRRSLALGSLALASSAFILPFSQMVRAAEA
                     PVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRGRSIR
                     RRMNHPDRLKYPMKRVGKCGEGKFERISWDE"
BASE COUNT         1256 a         1145 c         1102 g         1137 t
ORIGIN      
        1 tttttgttga ccacttcaca tattcacgat cagagcgaac gacgctttgt ggtggaatgt
       61 gacggcgaaa aagccggtct ggtggagctg gtggaaatta accatgtaca tcgccgggca
      121 gaatttcaga taattatctc cccggagtat caggggaaag gtctggcaac ccgtgccgcc
      181 aaattagcaa tggactatgg cttcaccgtt ctcaatctct ataagctgta tctgatcgtc
      241 gataaagaga atgaaaaagc gattcacatt taccgcaagc ttggctttac ggttgaaggt
      301 gaattgatgc atgagttttt tattaatggt caatatcgta atgccattcg catgtgtata
      361 ttccagcatc agtatctggc agagcacaaa acaccaggtc agactctcct gaagccgacc
      421 gcacaatagc attaataata atcgatcgta tttttgatgg tgtaaacccg ttcgacggcg
      481 ggttttactc cttcatcaac aatgatcagc tgacagtcca ccggattggc gtgactgtca
      541 tattcacagc tctgttttac attaccaact cgttgattat tcagtaaagt aaccgctgtg
      601 taatctaatt ttttgatcgg gtccgttgat ggcgtggcgc tgacagataa tgttttgtcg
      661 ttacttttcg tggttttacc cagtggataa ccctgatcat catagcgata ttccatctgc
      721 atttgtttgc tgctggcttt aatcacgaag ccattatcat cggtttccca actcaccccg
      781 gcagaaggta attctgctag ctggcatttt ccctgtaaac gtactctctt ctccagcgtc
      841 tcggcatcac ggtaataatt ggcgtccagt accagagcga ccacggtatt attttccaga
      901 tccagtaatt cgagtgaatc aaaacagcct tcttccgaca aagtcccaga aacacgtttc
      961 gtcacttcac cttgctcatc cattaatgtc tgagtgaaat cttttaccgg accacgcagc
     1021 ggatcaaaat cgaattcatt agagaaactg gccatctcag gggtaaatga aagtgttacc
     1081 tctgtgcggt cacatcctgt gaggaatatc gcgagtaagc atggtagtaa tttgtatttc
     1141 acaacagtca ccagagagta gagatgattc tcaatcatag tagcaaatac agtactttac
     1201 acgttaaatg ctatgcttaa agaagttatc ttcgcgtaag gagcttatga tgaaactctc
     1261 aacctgctgt gccgcgcttc tgctcgccct cgcctcaccc gcggtactcg ccgcgccggg
     1321 atcctgtgag cgcatacaga gcgatatatc acagcgcatt atcaataatg gcgtacccga
     1381 aagcagcttc acattaagta ttgtacccaa tgaccaggtt gatcagcctg attcccaggt
     1441 cgtcgggcat tgtgctaatg atacgcataa aattctctac acccgcacca ccagcgctaa
     1501 cgtctctgct cccgcgcagt ctacccagga tggcgcgcct gccgaaccgc agtaatacat
     1561 tatcgactga acgccggata tgacacatcc ggcgatttga acatacaaca taatcccacc
     1621 ttattactca tacccttcta ttgatgtgga ttaataattc ttaacccaaa atgggtagac
     1681 cccctctatt gttagcgcgc taaatattca atacataaac atttatataa cgataaagaa
     1741 cagggagtga gttatgtcca aaaatgaccg aatggtgggc atcagccgca gaacactcgt
     1801 taaatcaacc gcgataggtt ctctggcgct ggctgcaggc ggtttttctt taccgttcac
     1861 cctgcgcagt gcagcggcaa cggtacaaca ggccagcgaa aaagtgatct ggggtgcctg
     1921 ttccgtcaac tgtggtagcc gctgtgcact tcgtctacat gttaaagata atgaagtgac
     1981 ctgggtggaa actgacaata ccggcagcga tgagtacggc aaccatcagg tacgcgcctg
     2041 tttgcgcggt cgctccatcc gccggcgtat taatcatccc gatcgcttga attacccaat
     2101 gaaacgcgtg ggtaaacgcg gtgaaggcaa attcgaacgg attagctggg atgaagccct
     2161 ggatactatc gccagtagcc tgaaaaaaac cgtcgaacaa tatggcaatg aggctgtata
     2221 tattcagtac tcttcgggga ttgttggcgg caatatgacc cgctcttcgc catcagcctc
     2281 ggcggtcaaa cgcctgatga actgctacgg ctgttcactc aatcagtatg gctcctacag
     2341 caccgagcaa atttcctgtg ccatgcccta cacctacggc agtaatgatg gcaacagcac
     2401 cacggatatt gaaaacagca agctggtcgt gatgtttggt aacaacccgg cagaaacccg
     2461 catgagcggc ggtggcatca cttatcttct tgaaaaagcg cgcgagaaat cgaacgccaa
     2521 aatgattgtt atcgatccgc gatataccga tacggctgct ggtcgtgaag atgaatggct
     2581 tcctattcgc ccgggcaccg atgccgcgct ggttgcgggt attgcctggg tattgattaa
     2641 cgaaaatctc gttgatcaac cttttctcga taaatactgc gtcggctatg acgaaaaaac
     2701 cttacccgca gatgcaccaa aaaatggtca ctataaagcc tatattcttg gtgaaggtga
     2761 tgataataca gcgaaaacgc cgcagtgggc ttcgcaaatt accggtatcc cggtggaccg
     2821 tatcatcaaa ctggcgcgtg aaattggcac agcaaaaccc gcttatatct gccagggctg
     2881 ggggccgcaa cgccaggcaa acggcgaact gactgcacgc gctattgcta tgttgcctat
     2941 tttgacgggc aatgtcggca tcagcggcgg aaatagtggc gcgcgtgaat cgacctatac
     3001 cattaccata gaacgcctgc cggtgctgga taatccggtc aaaacgtcaa tctcctgctt
     3061 cagctggaca gatgctatcg atcatggtcc gcaaatgacg gcaatccgcg acggcgtccg
     3121 cggcaaagat aaactggatg tgcccattaa gttcatctgg aactacgcgg gaaataccct
     3181 cgttaatcag cattctgaca tcaacaaaac gcatgaaatt ctgcaggacg aatcgaaatg
     3241 cgaaatgatt gtggtcatcg aaaactttat gacctcatcg gcaaaatatg ccgacattct
     3301 gctgccagac ctgatgaccg ttgagcagga agatattatt cctaacgact acgccggtaa
     3361 catgggatat ctcattttcc tccagcctgt caccagcgaa aaattcgaac gcaaaccgat
     3421 ttactggatc ctgagtgaag tcgcgaaacg tcttggacct gacgtctatc aaaagttcac
     3481 agaaggtcgc acgcaggaac aatggttaca acatctgtac gccaaaatgc ttgccaaaga
     3541 tccggcgtta ccgtcttacg acgaactgaa aaaaatgggt atctataagc gtaaagatcc
     3601 caatggccat tttgtcgcct acaaagcatt tcgtgacgac cccgaggcaa atccacttaa
     3661 aacgccttcc ggtaagattg aaatttattc cagcaggctg gcggaaattg cccgtacctg
     3721 ggaactggaa aaagatgaag tgataagccc attgccagtt tatgcctcaa cctttgaagg
     3781 ctggaactcc cctgaacgta gaaccttccc actgcaactg tttggtttcc attacaaatc
     3841 ccgtactcac tcgacctacg gcaatattga tctcctgaag gctgcctgcc gtcaggaggt
     3901 gtggatcaac cctatagatg cgcagaaacg tgggattgcc aacggcgata tggtgcgggt
     3961 gtttaaccat cgtggcgaag ttcggctacc agccaaagta acaccacgta ttctccctgg
     4021 agttagcgct atgggccagg gagcctggca cgaggccaat atgtctggcg ataaaatcga
     4081 ccatggcggc tgtgtgaata cgctaaccac tctgcgccct tcaccactgg cgaagggaaa
     4141 cccgcagcac actaatctgg tcgagatcga aaaaatataa cccacgacaa ccataaattc
     4201 tggcatgaca ttttgtttga aaagcaataa gtgagtaatg atgaaaatcc ataccacaga
     4261 ggcgctcatg aaggctgaaa tcagccgtag aagtctggca cttggcagtc ttgcgctggc
     4321 aagcagtgct ttcattttgc cattttccca aatggtccgg gcggcagagg ctccggtaga
     4381 agagaaagcg gtctggagtt cctgcaccgt taactgcggg agccgctgtc tgttacgttt
     4441 gcatgtgaaa gatgacaccg tgtactgggt ggagtctgat acgacaggtg acgacgtcta
     4501 cggtaatcat caggttcgag cgtgtttacg cgggcgctct atccgccgac ggatgaatca
     4561 tcctgatagg ttgaaatatc ccatgaagcg cgtcggcaag tgcggtgaag gtaaatttga
     4621 acggataagt tgggacgaag
//
LOCUS       DAJVUN010000241         4633 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.244, whole genome shotgun sequence.
ACCESSION   DAJVUN010000241 DAJVUN010000000
VERSION     DAJVUN010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4633
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.244"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..527
                     /gene="hdhA"
                     /locus_tag="OQQ76_003784"
     CDS             <1..527
                     /gene="hdhA"
                     /locus_tag="OQQ76_003784"
                     /EC_number="1.1.1.159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="7-alpha-hydroxysteroid dehydrogenase"
                     /protein_id="HCS1970106.1"
                     /translation="AISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHL
                     SQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIR
                     VNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSG
                     QILTVSGGGVQELN"
     gene            756..1346
                     /gene="uidR"
                     /locus_tag="OQQ76_003785"
     CDS             756..1346
                     /gene="uidR"
                     /locus_tag="OQQ76_003785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator UidR"
                     /protein_id="HCS1970107.1"
                     /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS
                     PGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQR
                     ALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLL
                     DLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS"
     gene            1733..3544
                     /gene="uidA"
                     /locus_tag="OQQ76_003786"
     CDS             1733..3544
                     /gene="uidA"
                     /locus_tag="OQQ76_003786"
                     /EC_number="3.2.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
                     /protein_id="HCS1970108.1"
                     /translation="MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRA
                     IAVPGSFNDQFADADIRNYVGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQ
                     EVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSY
                     FHDFFNYAGIHRSVMVYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRD
                     ADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAG
                     KDEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYA
                     EEMLEWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAI
                     KELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCD
                     AHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVD
                     TLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGN
                     KKGIFTRDRKPKSAAFLLQKRWTGMNFGEKPQQGGKQ"
     gene            3541..>4633
                     /gene="uidB"
                     /locus_tag="OQQ76_003787"
     CDS             3541..>4633
                     /gene="uidB"
                     /locus_tag="OQQ76_003787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001075873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide transporter"
                     /protein_id="HCS1970109.1"
                     /translation="MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAA
                     AAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD
                     WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV
                     CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLK
                     ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYERYVLNDTGLFTVLVLVQNLVG
                     TVASAPLVPGMVARSGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG
                     VTMTVMWALEADTVEYGEYLTGVRIEGLTY"
BASE COUNT         1125 a         1093 c         1239 g         1176 t
ORIGIN      
        1 ttgctatcag taagctgggt aaagttgata ttctggttaa caacgccggt ggcggtggac
       61 ctaaaccgtt tgatatgcca atggcggatt ttcgccgtgc ttatgaactg aatgtgtttt
      121 cttttttcca tctgtcacaa cttgttgcgc cagaaatgga aaaaaatggc ggtggcgtta
      181 ttctgaccat cacttctatg gcggcagaaa ataaaaatat aaacatgact tcctatgcat
      241 catctaaagc tgcggccagt catctggtca gaaatatggc atttgacctg ggtgaaaaaa
      301 atattcgggt gaatggcatt gcgccggggg caatattaac cgatgccctg aaatccgtta
      361 ttacaccaga aattgaacaa aaaatgttac agcacacgcc gatcagacgt ctgggtcaac
      421 cgcaagatat tgctaacgcg gcgctgttcc tttgctcgcc tgcagccagc tgggtaagcg
      481 gacaaattct caccgtctcc ggtggtgggg tacaggagct caattaatac actaacgaac
      541 cggtaaacag ccgtatgtgt tgtttaccgg gatagcgtgt gcaattcatc aacgtctctg
      601 ctaaacaact ggcagccaaa tcacggctat tggttaacca atagctggat gaaaagcata
      661 cgaatagagt gtgccttcgc actattcaac agcaatgata ggcgctcacc tgacaacgcg
      721 gtaaactagt tattcacgct aactataata gtttaatgat ggataacatg cagactgaag
      781 cacaaccgac acggacccgg atcctcaatg ctgccagaga gattttttca gaaaatggat
      841 ttcacagtgc ctcgatgaaa gccatctgta aatcctgcgc cattagtccc gggacgcttt
      901 atcaccattt catctccaaa gaagccttga ttcaggcgat tatcttacag gaccaggaga
      961 gggcgctggc ccgtttccgg gaaccgattg aagggattca ttttgttgac tatatggtcg
     1021 agtctattgt ctctctcacc catgaagcct ttgggcaacg ggcgctggtg gtcgaaatta
     1081 tggcggaagg gatgcgtaac ccacaggtcg ccgccatgct taaaaataag catatgacga
     1141 tcactgaatt tgttgcccag cggatgcgtg atgcccagca aaaaggcgag ataagcccag
     1201 acatcaacac gtcaatgact tcacgtttac tgctggatct gacctacggt gtactggccg
     1261 atatcgaagc ggaagatctg gcgcgtgaag cgtcgtttgc tcagggatta cgcgcgatga
     1321 ttggcggtat cttaaccgca tcctgatcct ctcatttcgc gggctggtga taactgtgcc
     1381 cgcgtttcat actttaattt ccctgtacaa aatacaatct agccgggatc ggagaattcc
     1441 cccaaaaata ttcaccgtag ccatatgtca tgagagttta tcgttctcaa gatgcccgaa
     1501 cgaacgtttg attgcttatt ttatggcttc tgtcaacgct gttttaaaga ttaatgcgat
     1561 ctatatcacg ctgtgcgtat tgcagatttt ggttttttga tcgcggtgtc agttcttttt
     1621 atttccattt ctcttccatg ggtttctcac agataactgt gtgcaacaca gaattggtta
     1681 actaatcaga ttaaaggttg accagtattt ttatttgaat gaggagtccc ttatgttacg
     1741 tcctgtagaa accccaaccc gtgaaatcaa aaaactcgac ggcctgtggg cattcagtct
     1801 ggatcgcgaa aactgtggaa ttgatcagcg ttggtgggaa agcgcgttac aagaaagccg
     1861 ggcaattgct gtgccaggca gttttaacga tcagttcgcc gatgcagata ttcgtaatta
     1921 tgtgggcaac gtctggtatc agcgcgaagt ctttataccg aaaggttggg caggccagcg
     1981 tatcgtgctg cgtttcgatg cggtcactca ttacggcaaa gtgtgggtca ataatcagga
     2041 agtgatggag catcagggcg gctatacgcc atttgaagcc gatgttacgc cgtatgttat
     2101 tgccgggaaa agtgtacgta tcaccgtttg tgtgaacaac gaactgaact ggcagactat
     2161 cccgccggga atggtgatta ccgatgaaaa cggcaagaaa aagcagtctt acttccatga
     2221 tttctttaac tatgccggga tccatcgcag cgtaatggtc tacaccacgc cgaacacctg
     2281 ggtggacgat atcaccgtgg tgacgcatgt tgcgcaagac tgtaaccacg cgtctgttga
     2341 ctggcaggtg gtagcaaatg gtgatgtcag cgttgaactg cgtgatgcgg atcagcaggt
     2401 ggttgcaact ggacaaggta ccagcgggac tttgcaagtg gtgaatcccc acctctggca
     2461 accgggtgaa ggttatctct atgaactgtg cgtcacagcc aaaagccaga cagagtgtga
     2521 tatctacccg ctgcgcgtcg gcatccggtc agtggcaggg aaggacgaac agttcctgat
     2581 taaccacaaa ccgttctact ttactggctt tggtcgtcat gaagatgcgg atttgcgagg
     2641 caaaggattc gataacgtgc tgatggtgca cgatcacgca ttaatggact ggattggggc
     2701 caactcctac cgaacctcgc attaccctta cgctgaagag atgctcgagt gggcagatga
     2761 acatggcatc gtggtgattg atgaaactgc agctgtcggc tttaacctct ctttaggcat
     2821 tggtttcgaa gcgggcaaca agccgaaaga actgtacagc gaagaggctg tcaacgggga
     2881 aactcagcag gcgcacttac aggcgattaa agagctgata gcgcgtgaca aaaaccaccc
     2941 aagcgtggtg atgtggagta ttgccaacga accggatacc cgtccgcaag gtgcacgaga
     3001 atatttcgcg ccactggcgg aagcaacgcg taaactcgac ccgacgcgtc cgatcacctg
     3061 cgtcaatgta atgttctgcg acgctcacac cgataccatc agcgatctct ttgatgtgct
     3121 gtgcctgaac cgttattacg gatggtatgt ccaaagcggc gatttggaaa cggcagagaa
     3181 ggtactggaa aaagaacttc tggcctggca ggagaaactg catcagccga ttatcatcac
     3241 cgaatacggc gtggatacgt tagccgggct gcactcaatg tacaccgaca tgtggagtga
     3301 agagtatcag tgtgcatggc tggatatgta tcaccgcgtc tttgatcgcg tcagcgccgt
     3361 cgtcggtgaa caggtatgga atttcgccga ttttgcgacc tcgcaaggca tattgcgcgt
     3421 tggcggtaac aagaagggga tcttcacccg cgaccgcaaa ccgaagtcgg cggcttttct
     3481 gctgcaaaaa cgctggactg gcatgaactt cggtgaaaaa ccgcagcagg gaggcaaaca
     3541 atgaatcaac aactctcctg gcgcaccatc gtcggctaca gcctcggtga cgtcgccaat
     3601 aacttcgcct tcgcaatggg ggcgctcttc ctgttgagtt actacactga cgtcgctggc
     3661 gtcggtgccg ctgcggcggg caccatgctg ttactggtgc gggtattcga tgccttcgcc
     3721 gacgtctttg ccggacgagt ggtggacagt gtgaataccc gctggggaaa attccgcccg
     3781 tttttactct tcggtactgc gccgttaatg atcttcagcg tgctggtatt ctgggtaccg
     3841 accgactgga gccatagcag caaagtagtg tatgcatatt tgacctacat gggcctcggg
     3901 ctttgctata gcctggtgaa tattccttat ggttcacttg ctaccgcgat gacccaacaa
     3961 ccacaatccc gcgcccgtct gggcgcggct cgtgggattg ccgcttcatt gacctttgtc
     4021 tgcctggcat ttctgatagg gccgagcatt aagaactcca gcccggaaga gatggtgtcg
     4081 gtataccatt tctggacgat tgtgctggcg attgccggaa tggtgcttta cttcatctgc
     4141 ttcaaatcga cgcgtgagaa tgtggtacgt atcgttgcgc agccgtcatt gaagatcagt
     4201 ctgcaaaccc tgaaacggaa tcgcccgctg tttatgttgt gcatcggtgc gctgtgtgtg
     4261 ctgatttcga cctttgcggt cagcgcctcg tcgttgttct acgagcgcta tgtgttaaat
     4321 gataccgggc tgttcactgt gctggtactg gtgcaaaact tggttggtac tgtggcatcg
     4381 gcaccgctgg tgccggggat ggtcgcgagg agcggtaaaa agaatacctt cctgattggc
     4441 gctttgctgg gaacctgcgg ttatctgcta ttcttctggg tttccgtctg gtcactgccg
     4501 gtggcgttgg ttgcgttggc catcgcttca attggtcagg gcgttactat gactgtgatg
     4561 tgggcactgg aagctgatac cgtagaatac ggtgaatacc tgaccggcgt gcgaattgaa
     4621 gggctcacct att
//
LOCUS       DAJVUN010000242         4538 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.245, whole genome shotgun sequence.
ACCESSION   DAJVUN010000242 DAJVUN010000000
VERSION     DAJVUN010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4538
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.245"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..138
                     /locus_tag="OQQ76_003788"
     CDS             <1..138
                     /locus_tag="OQQ76_003788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HCS1970110.1"
                     /translation="PDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDY
                     K"
     gene            189..2648
                     /locus_tag="OQQ76_003789"
     CDS             189..2648
                     /locus_tag="OQQ76_003789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706516.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HCS1970111.1"
                     /translation="MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISL
                     LKEKGVIAPGEYFVSVAVNNNQISNGQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQ
                     SLPLINQCVDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWPPPSTWKEGVAGVL
                     MDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNQTDSDDNHKQSGEIS
                     RTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGI
                     AQTNATVTISQSGRVIYQKKVLPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAA
                     STPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLLLSGDD
                     YHSAAMGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLA
                     AYRFSDRHFHSYANYLDHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWN
                     ADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDHDNQIYLSISLPFGNGGRVG
                     YDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDI
                     SGTYAANDYSSVSSSWSGSFTATQYGAAFHRHSSTNEPRLMVSTDGVADIPVQGNLDY
                     TNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSLASRSGK
                     DVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQKFTVVWGDNQH
                     CSLHLPEHMEDTANRLILPCH"
     gene            2663..3394
                     /locus_tag="OQQ76_003790"
     CDS             2663..3394
                     /locus_tag="OQQ76_003790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706517.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HCS1970112.1"
                     /translation="MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDN
                     RSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTTKLPGDRE
                     TLFFYNMREIPPAPEKNSDHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQG
                     NQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMD
                     DYGALRMTTLNCSGQCHLQAVEAKK"
     gene            3391..4451
                     /locus_tag="OQQ76_003791"
                     /pseudo
     CDS             3391..4451
                     /locus_tag="OQQ76_003791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415244.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
BASE COUNT         1231 a         1119 c         1052 g         1136 t
ORIGIN      
        1 ccagatatcg acctggctcc gacctccagc gaacaaacgc tgaatttctt tgcctggatg
       61 gaacaaattg atcaggctac acctgtaacg ccaggcgcag ttacggcgaa tgcaacctac
      121 gtgctggatt ataaataagt attactttgg cggcgctatc gccgcctttc ataaaatatt
      181 tatcaggtat ggacaccgtg aatatttatc gactctcttt tgtatcctgc ctggtcgtgg
      241 cgatgccttg cgcattggcg gtcgaattca accttaatgt tctcgataaa tcgatgcgcg
      301 accgcattga tatttcatta ttaaaggaaa aaggagtcat tgctcccggt gagtattttg
      361 ttagcgttgc ggtaaataat aaccaaatca gtaacgggca aaagattaac tggcacaaaa
      421 atgacgataa aaccattccg tgcatcaatg atttactggt cgataaattt ggcttaaaac
      481 ctgaagtccg tcagtcgtta ccattgataa atcagtgcgt cgattttagc tcccgacctg
      541 aaatgctctt caatttcgat caagccaatc agcaactgaa tattagtatt ccgcaagcct
      601 ggctggcgtg gcactcagaa aactggcccc caccctccac atggaaagaa ggtgtcgccg
      661 gtgtcctgat ggattacaac ttgtttgcca gcagctaccg cccacaggat ggcagcagca
      721 gcactaatct taacgcctat ggaacagccg gaatcaacac gggggcatgg cgcttacgca
      781 gtgattatca gttgaatcag actgatagcg atgataacca taaacagtca ggcgaaatat
      841 cacgtaccta tctttttcgc ccgttaccgc aattaggttc aaaattaacc ctcggcgaaa
      901 cggattttag ttccaatatt ttcgacggtt tttcttatac cggtgcggca ctggcaagtg
      961 acgatcgaat gttgccatgg gaactacgcg gctacgcccc acaaattagc ggtattgcac
     1021 agaccaatgc cacggtgacg atcagtcaat caggccgcgt catttaccag aaaaaagtcc
     1081 taccaggccc atttatcatt gacgacctta atcagtctgt tcagggcaca ctggatgtca
     1141 aagtgacgga agaagatggt cgggtgaaca atttccaggt ttcggcagca tcgacgccct
     1201 tcctgactcg tcagggacag gttcgctata aactggccgc gggtcagcca cggccctcca
     1261 tgtcacatca aactgaaaat gaaacctttt ttagcaatga agtttcctgg gggatgctgt
     1321 caaacacctc gctgtacggc ggcctgctgc tttctggtga tgactaccat tctgccgcaa
     1381 tgggtattgg gcaaaatatg ctgtggcttg gtgcgctgtc gtttgatgtc acgtgggcca
     1441 gtagccattt tgatactcag caggacgagc ggggcttaag ctaccgtttt aattacagca
     1501 aacaagtgga tgccactaac agcacgattt ccctcgccgc ttatcgtttc tccgatcgtc
     1561 attttcacag ctacgccaac tatctggatc acaaatacaa cgacagcgat gcgcaggacg
     1621 aaaaacagac gatcagctta tctgtgggcc aaccgattac cccactaaac ctcaatcttt
     1681 acgccaacct gctacatcaa acctggtgga atgcagacgc ctccacgacc gccaacatca
     1741 cggcaggttt taatgttgat attggtgact ggagagatat ctctatttcg acgtcattca
     1801 atacaaccca ttacgaagat aaagatcacg acaaccagat ttacctgtcg atttcgctcc
     1861 ccttcggtaa cggtggtcgg gttggctatg acatgcaaaa cagtagccac agcaccacac
     1921 accgcatgtc gtggaacgat acgctggatg aacgtaatag ctggggcatg tctgccggac
     1981 tgcaatccga ccgtcctgac aatggagccc aggtgagcgg caactatcag cacctgagtt
     2041 cagcgggtga gtgggatatt tctggtacct atgccgccaa tgattacagt tccgtcagca
     2101 gcagctggag cggttctttc accgcaaccc aatatggtgc agcgtttcat cgccacagct
     2161 ccaccaatga accacgcctg atggtcagca ccgatggcgt ggcagatatt ccggttcagg
     2221 gcaatctcga ctacaccaac cattttggca ttgcggtggt accgttgatt tccagttacc
     2281 agccttccac cgtggcggtg aacatgaatg acttacccga cggcgtaaca gttgcagaaa
     2341 acgttatcaa agaaacgtgg attgaaggcg cgataggtta caaatcactg gcttcccgtt
     2401 ccggtaaaga cgttaacgtc atcattcgca acgccagcgg tcagtttcct cccctcggag
     2461 cggatatccg ccaggatgac agcggcatta gcgtggggat ggttggcgag gaaggacatg
     2521 cctggttaag cggagtcgct gaaaatcaaa agtttaccgt ggtctggggt gataaccagc
     2581 attgctcgct ccatcttcct gaacatatgg aagacaccgc aaatcgcctg attttacctt
     2641 gtcattaatt aaggaaatga aaatgacatt tatgaaagga ctaccccttt tgttgttggt
     2701 tgccagtctg tgcagccacg ctgcactaca acccgatcgc actcgtattg tgtttaacgc
     2761 taatgataaa gctaccagtc tgcgggtgga taatcgtagc gataaactcc cctacctcgc
     2821 ttattcctgg ctcgaaaatg aaaaagggga gaaaagcgat gatcttctgg tcgccctgcc
     2881 gccgatacaa cgtctggaac cgaaagcaac aacgcaggta cggatagtaa agcaagcctc
     2941 gaccacaaaa ttaccgggcg atcgcgaaac gctatttttc tacaatatgc gtgaaattcc
     3001 tcccgccccg gaaaaaaaca gcgaccatgc cgttctgcaa gtcgccattc agagtcgtat
     3061 caaggtgttc tggcgaccgg ctgcattacg caagaaagca ggagaaaagg tcgaactgca
     3121 gttacaggtc agccagcagg gcaaccaact gacactgaaa aatcctaccg cgtattatct
     3181 gaccattgcc tacttgggac gaaatgaaaa aggcgttctc cccggcttca aaaccgtgat
     3241 ggttgcgcct tttagtacgg tcaacacaaa caccggaaat tatagcggca gccagtttta
     3301 tctcggttat atggatgatt acggcgcgtt acgcatgacg acgctcaact gcagcggaca
     3361 atgccattta caagccgtgg aggcgaagaa atgagtgctg gcaagggagt gttgctcgtc
     3421 atctgtctgt tatttctgcc gttgaagtct gcgcttgccc tgaactgcta ctttggttca
     3481 tccggtggct cggtagaaaa atcagaagcg attcaacctt ttgctgtacc aggcaatgcc
     3541 aaactcggcg ataagatttg ggaatctgac gatattaaaa ttcccgtcta ttgtgacaac
     3601 aataccaacg gcaattttga aagtgagcat gtttatgcct gggtaaaccc ctacccgggg
     3661 gtgcaggatc gctattatca actcggcgta acttacaatg gcgttgatta tgacgccaac
     3721 cagggaaaaa gccgcatcga cactaaccag tgtattgaca gtaagaacat tgacatttat
     3781 acccctgagc agattatcgc gatgggatgg cagaacaaaa tttgctcggg tgatcccgct
     3841 aatattcaca tgtcgcgtac ctttctcgct cgcatgcggt tatacgtcaa aatacgagaa
     3901 atgccgccgc atgattatca aagtacgctt agcgactata tcgtcgtgca atttgacggt
     3961 gccggtagcg ttaacgaaga ccctactgcc caaaacctga aatatcatat tactggtctg
     4021 gaaaacattc gcgtgctgga ttgcagcgtc aatttttcca tttcaccgga aacacaggtg
     4081 attgattttg gtaaatttaa tttgctggat attcgtcgcc acacaatgtc gaaaacattc
     4141 agtattaaga cgacaaaatc acaaaatgac caatgcaccg acggatttaa agtcagttcc
     4201 tccttttata ccgaagaaac gttggttgaa gaagataaag cattgttgat tggtaatggt
     4261 ctgaagctac gtttgctgga tgaaaacgcc tcgccttata ccttcaataa atatgctgaa
     4321 tacgccgatt tcaccagcga catgttggtc tacgaaaaaa cctatacagc tgaactttcg
     4381 tccattgcag gtaccccatc gaggctgggc ccttcgatac agtggtgctt tttaaaatta
     4441 actataactg atttgccatg atgccctttg cagccggaaa gggcatctct ttcagaaaat
     4501 tgctgatttt cctcttttcc ttgattactg ttattttt
//
LOCUS       DAJVUN010000243         4511 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.246, whole genome shotgun sequence.
ACCESSION   DAJVUN010000243 DAJVUN010000000
VERSION     DAJVUN010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4511
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.246"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            80..351
                     /locus_tag="OQQ76_003792"
                     /pseudo
     CDS             80..351
                     /locus_tag="OQQ76_003792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3811 domain-containing protein"
     gene            complement(484..1356)
                     /gene="rluF"
                     /locus_tag="OQQ76_003793"
     CDS             complement(484..1356)
                     /gene="rluF"
                     /locus_tag="OQQ76_003793"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HCS1970113.1"
                     /translation="MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD
                     QVKPGDIVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP
                     IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL
                     GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL
                     GEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN
                     GKRFTSPGRKKKGR"
     gene            1704..2651
                     /locus_tag="OQQ76_003794"
     CDS             1704..2651
                     /locus_tag="OQQ76_003794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HCS1970114.1"
                     /translation="MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR
                     GRDQGIVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQL
                     LDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
                     YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGIGSPAIR
                     DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQAR
                     YSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK"
     gene            2721..3527
                     /locus_tag="OQQ76_003795"
     CDS             2721..3527
                     /locus_tag="OQQ76_003795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HCS1970115.1"
                     /translation="MQTWLNLQDKIIIVTGGASGIGLTIVEELLAQGANVQMVDIHGG
                     DGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAP
                     AGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC
                     YAATKAALNSFTRSWSKELGKHGIRVVGIAPGILEKTGLRTPEYEEALAWTRNITVEQ
                     LREGYTKNAIPIGRAGRLAEVADFVCYLLSERASYITGVTTNIAGGKTRG"
     gene            3537..3944
                     /locus_tag="OQQ76_003796"
     CDS             3537..3944
                     /locus_tag="OQQ76_003796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sorbose transporter subunit IIA"
                     /protein_id="HCS1970116.1"
                     /translation="MVNAIFCAHVKLACAMLESVQMVYGDARVEAVEFVPGENAGDIV
                     AKLGRLVSIHNQDEWLIAVDLQCGSPWNAAAMLAMRNPRLRVISGLSLPLALELVDNQ
                     DSMNVDEVCEHLTQIAKQTCVVWKQLATAEEDF"
     gene            3944..4438
                     /locus_tag="OQQ76_003797"
     CDS             3944..4438
                     /locus_tag="OQQ76_003797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HCS1970117.1"
                     /translation="MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRR
                     TLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVHQGVKIDTL
                     NIGGMVWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ
                     LIAN"
BASE COUNT         1204 a         1068 c         1159 g         1080 t
ORIGIN      
        1 aggcaaaatg aatattatca gttctgctcg caaacgaatt cccgtacact gaactctctg
       61 gctcactgag ggcaccatca tggcactccc ccgtattacc caaaaagaga tgactgaacg
      121 cgagcagcgt gaacttaaaa cactgctgga tcgggcgcgg attgcgcatg gtcgcgtact
      181 gaccaactcc gaaaccaaca gcattaagaa agagtacatc gataaattaa tggtcgagcg
      241 tgaggctgaa gcgaaaaagc ccgccaattg aagaaaaagc aggcttataa accggatcct
      301 gaagcgtcat ttagctggtc agcaaatacg tcgacgcgcg gcaggcgcta atgaacaatc
      361 aacgcctgag attttcactc gtctgtgtgg acacaatctt cccctcaccc taaccctctc
      421 cccgaagggg cgaggggact gtccgagctc tttttggacg ttttcatcag tctgaggcgt
      481 taatcagcgt cccttctttt tacgccccgg cgaggtaaaa cgcttaccgt tggacgccgg
      541 gcgaccgcct ttttccgccg ttttttccat cttaacgact ggacgtttga tgcccgctgt
      601 tttcggtttg gccttcgctt taggttttgc ctcggaagag gaattttcga tgagcttaaa
      661 gaggtcgatt aactcatcgt cggttaaatc gcgccactcc cccagcggaa tgccgcttaa
      721 gctgacgttc ataatgcgcg tacgttccag ctttttcact tcatagccga aatgctcgca
      781 catgcgccgg atctgacggt tcagcccctg caccagggta atgcggaaga caaacggcgc
      841 ttcttttttg actttgcact ttttcgtcac cgtcccgagg atcggcaccc ccgcccccat
      901 accacgaata aattcatcgg taatcggttt atcgaccgtc accagatact ctttctcatg
      961 atcgttaccc gcacggagga tcttattcac cagatcgccg tgattggtga ggaaaatcag
     1021 cccctgggag tctttatcca ggcggccaat cgggaacacg cgtttgctgt ggttaacgaa
     1081 atcgacaatg ttatcgcgct cgccatcttc ggtggtgctg acaataccga cgggcttgtt
     1141 cagggcgata agtaccaaat cttcggcttc ccgaggctca atcaactgac cgtttacttt
     1201 cacaatgtcg ccgggtttca cctgatcgcc aatggtggct cgcttgccat taaggaacac
     1261 attgccttgc tcgatatagc gatccgcttc gcggcgtgag caaattccgc tttcgctgat
     1321 gtatttattt aaacggactg atgagtcggg cagcataaat tctcctgtaa aacgcggaat
     1381 ataccgtacc tcttagcggg gaaaaacagg gttatgcggc aacgtcgaaa ttaaatgtga
     1441 tctgccacgc cttttatcac aaaagtgtct ccggaagtac gatgcaaatt tgcctggcaa
     1501 aataaggata atcaacatat tacgaatcgc tgcacacctg tgctgatgac tactacgcag
     1561 agaaacaaat gtgcaagaga aagcgctata tctccccatg caaagagtga aaaatcgctt
     1621 tgaaaggccc tcatgatggg gttatatcag atcaagcggt gagaaagcgt atttgcacaa
     1681 atgtgcagaa ccaggaggcg gcaatggaaa acagtgacga tatccgtttg attgtgaaga
     1741 ttgcccaact ctattacgaa caggatatga cgcaggcgca aatcgcgcgc gaactgggta
     1801 tttaccgcac caccatcagc cgcttgctta aacgaggccg cgatcaggga attgtcacca
     1861 tcgccatcaa ctatgactac aacgaaaatc tctggctgga gcagcaactg aagcaaaagt
     1921 ttggcctgaa agacgttgtg gtggtgtcgg gaaatgatga ggatgaagag actcaactgg
     1981 cgatgatggg gttacacggc gcgcaactgc tggatcgctt gctggagcct ggcgatattg
     2041 tcggtttttc ctggggtcgc gcggtgagcg cactggttga aaacttgccg caggcggggc
     2101 aatcgcggca gttaatctgc gtaccaatta ttggcggacc gtccggtaaa ctcgaaagcc
     2161 gctatcatgt aaacacatta acctacagcg cggcagcgaa gctgaaaggg gaatcgcatc
     2221 tcgcggattt tccggctctg ctggataacc cattaattcg taatgggatc atgcagtctc
     2281 agcactttaa aaccatctct gcctactggg ataatctgga tgtcgccctg gtgggaattg
     2341 gctcaccggc cattcgcgac ggcgctaact ggcatgcgtt ttatggtggt gaagagagtg
     2401 acgacctgaa tgcccgccag gttgctggcg atatttgctc gcgctttttt gatattcacg
     2461 gcgcaatggt tgaaacgaat atgagcgaaa aaacactctc tatcgaaatg aataaattaa
     2521 agcaagcacg atattccatt ggcattgcca tgagtgaaga aaaatacagc ggaattgttg
     2581 gtgcactgcg tggaaaatat attaattgtc tggtaacgaa tagcagcaca gctgaactat
     2641 tactgaaata aaaatcttcc cgatgtttag cgtaataaaa attacggcgg ggccctatta
     2701 tctaaaatca ggagtctgtt atgcaaacgt ggttaaattt gcaggataaa atcattattg
     2761 tcaccggcgg cgcatccggt attggtctga cgattgtaga ggaattatta gcacaaggcg
     2821 caaacgtaca gatggtagat attcacggtg gcgatggtca atatgaaggt cataaaggct
     2881 atcagttttg gccgaccgat atttccagcg ccaaagaggt aaatcatacg gtagcggaaa
     2941 ttatccagcg ttttggtcgc atcgacggtc tggtcaataa cgccggggtc aatttcccgc
     3001 gtctgctggt cgatgagaaa gcgcctgccg ggcagtatga actcaacgaa gctgcattcg
     3061 aaaaaatggt caatatcaac cagaaaggcg tttttctgat gtcgcaggcg gtggcgcgac
     3121 agatggtcaa acaacatgat ggcgtgattg tgaatgtttc ctcagaaagt ggactggaag
     3181 gctcagaagg ccaaagctgt tacgccgcta ccaaagccgc gcttaatagc ttcacgcgat
     3241 cctggtcgaa agaattgggt aaacacggta tccgtgtggt cggtatcgcg ccggggattc
     3301 tggaaaaaac aggactgcgc acgccggaat atgaagaagc gctggcgtgg acgcgcaata
     3361 tcaccgtcga gcagctgcgt gaaggctata ccaaaaacgc cattcctatt gggcgcgccg
     3421 gaagattagc agaagtcgct gattttgttt gttatctgct gtctgaacgc gccagctata
     3481 tcaccggagt aaccactaac attgcgggcg gcaaaacgcg cggctaagga ggctttatgg
     3541 tcaatgccat tttttgcgcc cacgtcaaat tagcttgcgc catgctggaa tcggttcaga
     3601 tggtgtacgg cgacgccagg gtcgaggcag ttgaatttgt gcccggcgag aacgccggag
     3661 acatcgtagc aaagctggga aggttagtaa gcattcacaa tcaagatgag tggctgattg
     3721 ccgtggattt acagtgcggc agcccgtgga atgcggcagc gatgcttgcg atgcgcaatc
     3781 ctcgtctgcg ggtaatcagc ggcctttctc tgccgctggc gctcgaactg gttgataacc
     3841 aggacagcat gaatgttgat gaagtgtgtg aacacctgac gcaaatcgca aagcaaacct
     3901 gcgttgtctg gaaacaactg gcaacggcag aggaggattt ctgatgaaca ttacgctcgc
     3961 ccgcattgat gaccgcctga tccacggtca ggtcactacc gtctggtcga aagtggctaa
     4021 cgcccagcgc attattatct gcaatgacga agtttataac gatgaagttc gccggacatt
     4081 attgcgtcag gctgcgccac cgggaatgaa ggttaacgtg gtcaatattg aaaaagccgt
     4141 cgctgtttat cacaacccgc aatatcagga cgaaaccgtt ttttatcttt tcactcgccc
     4201 acaggatgcc ttagcgatgg ttcaccaagg ggtaaaaata gacaccctaa atattggcgg
     4261 catggtctgg cggcccggta aaaaacagtt aaccaaagcg gtttcattag atgatgatga
     4321 tattaacgca tttcatgagt taaataatct tggcgtcata ctggatttac gcgtcgtagc
     4381 gtcagatccc tcaatcaata ttatcgacaa aataaacgaa cagttaatcg caaattaaat
     4441 aatagcgctt gtgtacatat gctttaacag gcagggatga cgacacttaa aaggtgaaaa
     4501 atcatggaaa t
//
LOCUS       DAJVUN010000244         4509 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.247, whole genome shotgun sequence.
ACCESSION   DAJVUN010000244 DAJVUN010000000
VERSION     DAJVUN010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4509
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.247"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(52..387)
                     /gene="arnE"
                     /locus_tag="OQQ76_003798"
     CDS             complement(52..387)
                     /gene="arnE"
                     /locus_tag="OQQ76_003798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnE"
                     /protein_id="HCS1970118.1"
                     /translation="MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLAL
                     ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG
                     GIVILGSTV"
     gene            complement(384..2036)
                     /gene="arnT"
                     /locus_tag="OQQ76_003799"
     CDS             complement(384..2036)
                     /gene="arnT"
                     /locus_tag="OQQ76_003799"
                     /EC_number="2.4.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A)
                     4-amino-4-deoxy-L-arabinosyltransferase"
                     /protein_id="HCS1970119.1"
                     /translation="MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLA
                     SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT
                     LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG
                     KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT
                     VLPWGLAIAQREPDFWHYFFWIEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP
                     GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA
                     AKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLW
                     AFFGWYTLTNVEKTWSFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR
                     YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR
                     QEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK"
     gene            complement(2036..2926)
                     /locus_tag="OQQ76_003800"
     CDS             complement(2036..2926)
                     /locus_tag="OQQ76_003800"
                     /EC_number="3.5.1.n3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HCS1970120.1"
                     /translation="MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDN
                     MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE
                     VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE
                     AKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKTEDFNGWLL
                     NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV
                     RGNIAGREGWLGCQQIAGSR"
     gene            complement(2923..>4509)
                     /gene="arnA"
                     /locus_tag="OQQ76_003801"
     CDS             complement(2923..>4509)
                     /gene="arnA"
                     /locus_tag="OQQ76_003801"
                     /EC_number="1.1.1.305"
                     /EC_number="2.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-amino-4-deoxy-L-arabinose
                     formyltransferase/UDP-glucuronic acid oxidase ArnA"
                     /protein_id="HCS1970121.1"
                     /translation="HRMVKRADAGAIVAQLRVAIAPDDIAITLHHQLCHAARQLLEQT
                     LPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPSAFSY
                     VGNQKFTVWSSRVHPHASKAQPGSVISIAPLLIACGDGALEIVTGQAGDGITMQGSQL
                     AQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS
                     DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL
                     DFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVS
                     KQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP
                     IKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGKMLL
                     ASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE
                     TIDETLDFFLRTVDLTDKPS"
BASE COUNT         1161 a         1214 c         1112 g         1022 t
ORIGIN      
        1 attgcgcaac tgaggcaata atgacgctga ataatcccca tatcaggccc attacaccgt
       61 actcccgagg atcacaatgc caccaataat gaacgccacc ccacaccagt gacgcggcga
      121 taccggttcg tgccacagtt ttactgcagc cagcgtcacc cagacaaaat tcagacttaa
      181 catcgggtag gcaatgccta ccggtacgtt ctgcaagacc agcagccaga gcaccatggc
      241 aagaccaaga caagccagcg ccagtcccag ccacagcacg atatgtttgc gccgtttgtt
      301 tatcgccaca aagcaggttg cctgtttctg acacaactgc ccggcaacgc taagcaagct
      361 ggcaaagact aatgttagcc agatcatttg ggacgatact gaatcagcac cagacgctcc
      421 tgacgatcga tggcatctgc gggcggaatg gcgagactgt tgatatcttc atcgcggtca
      481 accgaaagca cgagtgtaat aatcccctcc tgacgatgtt gattaagcca gtttgcgaac
      541 tcatcaccgc tgacaaatct ccctttcgca tccggataat taaggccgta tttcaactca
      601 cctgtctggc gatacatgat gatgtcatcg cgttgtaggc tccatgccag acctgcggca
      661 acaccgacgc tatcagtaag aatatagcgg cttggttgaa gtgattcttg tgtcatctcg
      721 acaaaaaatt gcggatgttt tccttccatg actctgtcag gaattgaaaa tcctaccagc
      781 aacgccagcc ccagcgggca aagcgcggcg aaagaccagg tcttttcgac gtttgttaag
      841 gtgtaccagc cgaaaaatgc ccatagcgaa aaaatcgacc aggcacaaaa gactttatag
      901 ctctcgaagg tttgccacac cggcgtgttc attggtcccc acggggagac cacaaatgtg
      961 gcaataatgc cagtgacgcc aaaagcgatg ttaatccagc cattaatccg cagcgccaga
     1021 ggattatttt ttgctgccag caaagcgtaa tgcgccatca gcattgccag agatgcaaag
     1081 caggaaagaa tataggtggg caatttacct ttagcgacgg agaaaaacag cagcggcatt
     1141 atcgtccagc tcaacaaata gacggttgcg gaatgcttgc ggtttttcca gcctgtgtac
     1201 agtgcaccgg ggagtaatcc cagccacggc aggctaccgg caatgatgac cggcacgtag
     1261 taccagaacg gagctctatg ttgggcatca tccagtgcaa agcgttgaat atgctcaatc
     1321 cagaaaaaat agtgccagaa gtcaggctcc cgctgcgcta tcgccagtcc ccaagggaga
     1381 accgtcagta cgcaactgat aaccgccagc cagccgtaaa taaagagatc tttccagcgt
     1441 ttttgcgtcg ctacccatgg cagcacgctt aataccggca cggcaagggc gagaaaacct
     1501 ttggtcatca cccccatgcc gcaggtgatt cccagcagta aaaatcctgc gcttttgcct
     1561 ttccacgtct gtgcctgcat tgccagccag aagctgcaca ttcccgccac cagccagaat
     1621 gcaataaacg gatcgagcac ggcataagtg ccgatggcat agacaataaa caatgagaga
     1681 taaattactg tggcgagtag agccagacgt ttatcgcgcc ataagcgcag agtaaaccag
     1741 gtcaccagcg cggcagttaa cagggtcgca aagataacgc ctgcccgcac accaaagtta
     1801 ttcgcgccaa atagccattg cccaatgctg ttaatccagt atccggcaat gggtttttcg
     1861 aaataacgta gccctaacag atggggcaca atccagtcgc cggatgccag catttctcga
     1921 ctgatttccg cataacgcgt ttcatcgggt tgccagagca gacgcgtgct gatcggtaac
     1981 aggtaatagc aggcaataaa cgcgaagagg ccgataaggt aacgtaccga tttcatcagc
     2041 gactacccgc aatttgttgg caacccagcc agccttcacg tccggcaata tttccgcgaa
     2101 caacttgtcc gagcggcaac gtctctgata acagttcgct taaagggcaa aatgtcacgc
     2161 cttcctgagc tgcgcgtttg aggagatcca caaaattatg ctgataagcg cagccttcaa
     2221 cttctgcatg aatggtataa accggcgtgc ctttatctcg caggatgcgg ttgagtaacc
     2281 aaccgttaaa atcttctgtt ttcacatccc gaccaatcac ttcatcccag gtgggtaagg
     2341 tcaccggaat ttgcgcagtg ccagggtttc ctgattcgag caatggacgg aacggcatgg
     2401 ccccacgaca atcgctgttg tagcgcaaat ggaacgcttc ttttgcttcg atcaccttct
     2461 ggtcggcacg ccagcccgca gcggcagaac aggttaccgg ttgaccgata atctcttcca
     2521 gagtgcgaag accgcgtgca atatcgtcga tcattgtttg ccgatcccag ttaccgctac
     2581 gggcttgcca ggcatggtga tcccaggcgt gcaggccgac ttcgtgatgt ttagccgctt
     2641 cacgaatgat atcggcattg gcatgaccaa tctctttacc tggccaggcc gtacctgcca
     2701 gtaaaatatc ccagccataa agcgatgccg cgtttgagcg cagcatcttc cacaaaaact
     2761 gtggcttcac cagtcgccag agatggcggc ccatattgtc cgggccgacg ctgaaaaaaa
     2821 tgctggcctg aatattatgc ttactcaaga tttccagcag acgcggcacg ccttcacggg
     2881 tgccacgaaa ggtatcgaca tcaatgcgta agcctacttt ggtcatgatg gtttatccgt
     2941 aagatcaacg gtgcgcagga agaaatccag cgtttcgtcg atggtttcct gcatatcaat
     3001 tttcggctcc cagtccaggc agcggtgggc attgcggatg ctcggtttac gatgctctac
     3061 gtcctgatat cctttgccgt agtagctgct actttcgaca acgcgaaagc ccgcaaacgg
     3121 tgggaaatga tggcgcagcg gatgtttttc gaagctcgcc agcagcatct tgcccagttc
     3181 ctcaatgctc gcttcgttct caggattgcc aatgttgata atttcaccgt cgcagcgatt
     3241 tcccgcattt tcgataatgc ggtataacgc ctcgatacca tcgcgaatat cagtaaagca
     3301 gcgtttttgt tttccgccat caatcagctt aatcggtgaa ccttctacca gattgagaat
     3361 gagttgcgta atagcgcggg agctgccgat tcgtgccgca ttaaggttat ccagtcgtgg
     3421 tcccatccag ttaaacgggc ggaagagggt gaactgtaaa ccctcttttt cgccataggc
     3481 ccagatcacc cgatcaagta attgttttga taccgaataa atccagcgtg gtttattcac
     3541 cgggccgacg attaaattag aatggtcctc atcgaagtat ttatcgctac acatcccata
     3601 aacttctgaa gttgacggga agatgattcg cttacggtac ttcacgcagt agcggataat
     3661 gcgcagattc tcttcaaaat cgagttcaaa tacgcgcagc gggttgcggg tatattcaat
     3721 cggcgtggct atcgccacca gcggcaagac gacatcacat tttttgacat gatactcaat
     3781 ccattcggaa tgaatactga tatcgccttc aacaaagtga aaatgcggat gattcagaaa
     3841 acggcttatc gcatcgctgc caatatccag accgtaaact tcataatgat cttcgcgcag
     3901 caggcgttct gtcagatggt tgccaataaa gccattcacc ccgaggatga gtacccgggt
     3961 acggcgtcgg gcggtgcagg caggctggct attcaagcgt gaaccttgca ccaggcccag
     4021 cgtctgcgct aattgcgagc cctgcatagt aatgccgtcg cctgcctgtc cggtgacgat
     4081 ttccagcgcg ccatcgccac aggcaatcaa cagcggtgca atagaaatca cgctccccgg
     4141 ctgtgctttg ctggcatgag gatgaacacg cgacgaccag acagtgaatt tctgattgcc
     4201 aacatagctg aaggcactcg gccacggatc ggcaacggca cgtaccatgt tgtgcagtac
     4261 ggatgccggt ttatgccatt caaggaaact gtcatccggc gttctgcgac caaaacaggt
     4321 ggcttcgttt tcgcgctggg cgatttccag aatattaccg tgtttaatgg cgggtaatgt
     4381 ctgttccagt agctggcgcg cggcatggca caattgatga tgcagcgtaa tagcgatatc
     4441 gtctggcgca atggcaacgc gcagttgcgc cacaatggcc ccagcatcgg cacgttttac
     4501 cattcggtg
//
LOCUS       DAJVUN010000245         4432 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.248, whole genome shotgun sequence.
ACCESSION   DAJVUN010000245 DAJVUN010000000
VERSION     DAJVUN010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4432
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.248"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..255
                     /locus_tag="OQQ76_003802"
     CDS             <1..255
                     /locus_tag="OQQ76_003802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCS1970122.1"
                     /translation="NEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLS
                     SGHKTEGQVLIYDRKVKVSPTLDVPLPENIPSNSTCDFCH"
     gene            complement(283..372)
                     /locus_tag="OQQ76_003803"
     tRNA            complement(283..372)
                     /locus_tag="OQQ76_003803"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(336..338),aa:Ser,seq:cga)
     gene            466..1263
                     /gene="mtfA"
                     /locus_tag="OQQ76_003804"
     CDS             466..1263
                     /gene="mtfA"
                     /locus_tag="OQQ76_003804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgsA anti-repressor MtfA"
                     /protein_id="HCS1970123.1"
                     /translation="MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAE
                     RFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDE
                     WEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGD
                     RASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSE
                     YFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH"
     gene            1364..1439
                     /locus_tag="OQQ76_003805"
     tRNA            1364..1439
                     /locus_tag="OQQ76_003805"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1397..1399,aa:Asn,seq:gtt)
     gene            1753..4432
                     /gene="yeeJ"
                     /locus_tag="OQQ76_003806"
                     /pseudo
     CDS             1753..4432
                     /gene="yeeJ"
                     /locus_tag="OQQ76_003806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416485.4"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter adhesin YeeJ"
BASE COUNT         1209 a         1062 c         1061 g         1100 t
ORIGIN      
        1 aacgaaatgt gggtagaagc aagaaatcgc gcaggcaaaa tttcaggtat tttaaccgac
       61 ttcacctttc atgatctgaa ggcgaaagga atttcagact atgaaggaag cagtcgggat
      121 aagcaacttt cctctggtca caaaaccgag gggcaagtgc taatctatga caggaaggtt
      181 aaagtttcac cgacacttga tgtcccgtta cctgaaaata ttccaagtaa ttccacgtgt
      241 gatttttgtc actgacttaa tgatgtataa gtgattgaat tttggcggag agagggggat
      301 ttgaaccccc ggtggagttg cccccactcc ggttttcgag accggtccgt tcagccgctc
      361 cggcatctct ccgttcagat ggttgccatg atgccaggaa atttggcatt ttaacagtcc
      421 ctgtccgtgc aattttgttc aagtgacgag tttgcgagca aaacgatgat taagtggccc
      481 tggaaagtac aagaatcagc acatcaaact gcccttccct ggcaggaagc actatcgatc
      541 ccccttttaa cgtgtctgac ggaacaggaa caaagcaaat tagtcactct tgccgaacgt
      601 tttttacagc aaaagcggct tgttccttta cagggctttg aactggattc attaagaagc
      661 tgccggatag cacttctatt ttgcctaccc gttctggagt taggactgga atggctggat
      721 ggttttcatg aagtcttaat ttatcctgcg ccatttgtgg tcgatgatga atgggaagac
      781 gatatcggtc tggtgcataa ccaacgtatt gttcagtcag gtcagagctg gcagcaaggg
      841 cctatcgttt tgaactggtt ggatatacaa gattcttttg atgcttctgg ttttaacctg
      901 attattcatg aagtcgctca taagctggac acccgtaacg gcgatcgcgc cagcggagtt
      961 ccctttattc cgttgcgtga ggttgctggc tgggaacacg atcttcatgc tgcaatgaac
     1021 aacattcagg aagaaatcga attggttggc gagaatgcgg cgagcattga tgcttatgca
     1081 gccagcgatc ctgctgaatg ttttgccgta ctttctgaat atttctttag cgccccagaa
     1141 ctttttgctc ctcgtttccc ttcattgtgg caacgtttct gccaatttta tcaacaagat
     1201 cctttgcaga gactgcatca cgctaatgat acagactcgt tttcggcgac gaatgttcat
     1261 taattaacaa ctttgcagat taattaacca attgaaatga cttatgaaat ttagtgttga
     1321 cagacaaggt accgctaagt aatatgcacc ccgttcacac gattcctctg tagttcagtc
     1381 ggtagaacgg cggactgtta atccgtatgt cactggttcg agtccagtca gaggagccaa
     1441 attctaaaaa ttcgcttttt tagcgcaatg tcactgacct tagttgaaca ttgtttttta
     1501 acggatagcg ggtttttaac atcttaagcg ccctcgacct ttatggttga tggcgttttg
     1561 ctatgaacgc catcaccatt ttcccctcga ttataaaact tgagttattc agtagtctcc
     1621 cctcttgcaa ctcacaccca aaactgccta acgaaaagtt attaattttc aatcatattg
     1681 ctatcagtat ttacattttt tcgctgtgct agaaagggcg catttatgtt agctcgttca
     1741 gggaaggtaa gcatggctac gaagaagaga agtggagaag aaataaatga ccgacaaata
     1801 ttatgcggga tgggaattaa actacgccgc ttaactgcgg gtatctgtct gataactcaa
     1861 cttgcgttcc ctatggctgc ggcagcacaa ggtgtggtaa acgccgcaac ccaacaacca
     1921 gttcctgcac aaattgccat tgcaaatgcc aatacggtgc cctacaccct tggagcgctg
     1981 gaatcggccc aaagcgttac cgaacgtttc ggtatttcgg tggctgagtt acgcaaactc
     2041 aaccagtttc gtacgtttgc tcgaggtttt aataatgtcc gccagggtga tgaactggat
     2101 gtcccggcac aagttagtga aaaaaaatta accccgccgc cgggtaatag cagtgacaac
     2161 ctcgagcaac agatagccag tacttcacag caaatcgggt ctctgctcgc cgaagatatg
     2221 aacagcgagc aagcggcaaa tatggcgcgt ggatgggcct cttctcaggc ttcaggcgca
     2281 atgacagact ggttaagccg cttcggtacc gcaagaatca cgctgggcgt ggatgaagat
     2341 tttagcctga agaactccca gttcgatttt ctccatccgt ggtatgaaac gcctgataat
     2401 ctctttttca gtcagcatac tctccatcgt actgacgagc gtacgcagat taacaacggc
     2461 ttaggttggc gtcatttcac tcccacatgg atgtcaggca tcaacttctt tttcgaccac
     2521 gatcttagcc gttaccactc ccgcgccggc attggcgcgg agtactggcg cgactatcta
     2581 aaattaagca gtaacggcta tttgcgactg accaactggc gcagcgcacc tgaactggac
     2641 aacgattatg aagcacgccc ggccaatggc tgggatgtac gcgcagaaag ctggctaccc
     2701 gcctggccgc accttggcgg taaactggtc tatgaacagt attatggcga tgaagtggcc
     2761 ctgttcgata aagacgatcg gcaaagtaat cctcatgcca taaccgctgg acttaactat
     2821 acccccttcc cgctgatgac cttcagcgcg gagcaacgcc agggtaaaca gggcgaaaat
     2881 gacacccgtt ttgccgtcga ttttacctgg caacctggca gcgcaatgca gaaacagctt
     2941 gacccgaatg aagtcgctgc acggcgtagc cttgcaggca gccgttatga tctggtggat
     3001 cgcaacaaca atatcgttct ggaatatcgc aaaaaagaac tggttcgcct gaccctgaca
     3061 gaccccgtga cagggaagtc aggagaagtg aaatcactgg tttcgtcgct acaaaccaaa
     3121 tatgccctga aaggctataa cgtcgaagcc accgcactgg aagctgccgg tggcaaagtg
     3181 gtcacaacgg gtaaagatat tctggttacc ctgccggctt accggttcac cagtacgcca
     3241 gaaaccgata acacctggcc gattgaagtc accgctgaag atgtcaaagg caatttgttc
     3301 gaatcgtgaa cagagcatgg tagccgttca ggcacctacg ttaagccaga aagattcctc
     3361 ggtatcgtta agtacccaga cgttgagcgc ggattcccat tcaaccgcca cactgacttt
     3421 tattgcgcat gatgcagcag gtaatcctgt tatcgggctg gtgctctcga cgcgtcacga
     3481 aggtgttcag gacatcaccc tttctgactg gaaagataat ggtgacggaa gctataccca
     3541 gatcctgacc acaggtgcga tgtctggcac gctgacgctt atgccacagc tgaacggtgt
     3601 ggatgcggct aaagcccccg ccgtggtgaa tatcatttct gtttcgtcat ctcggactca
     3661 ctcgtcaatt aagattgata aggaccgtta tctctccggc aatcctatcg aggtaacggt
     3721 agaactgaga gatgaaaatg acaaacctgt taaggagcaa aaacagcaac tgaataccgc
     3781 agtcagcatc gacaatgtga aacctggtgt cactacagac tggaaagaaa ccgcagatgg
     3841 cgtctataag gcaacctata ccgcctatac caaaggcagt gggcttactg cgaagctatt
     3901 aatgcaaaac tggaatgaag atttacatac cgctggattt atcatcgacg ccaacccgca
     3961 gtcagcgaaa attgcgacat tatctgccag caataatggt gtgctcgcca atgagaatgc
     4021 agcaaacacc gtctcggtca atgtcgctga tgaaggaagc aacccaatca atgatcatac
     4081 cgtcacgttt gcggtattaa gcggatcggc aacttccttt aacaatcaaa acaccgcaaa
     4141 aacggatgtt aatggcctgg cgactattga tctgaaaagt agtaagcagg aagacaacac
     4201 ggttgaagtc acccttgaaa atggcgtgaa acaaacgtta atcgtcagtt ttgtcggcga
     4261 ctcgagtacc gcacaggttg atctgcagaa gtcgaaaaat gaagtggtcg ctgacggcaa
     4321 tgacagcgcc acaatgaccg cgacagttcg ggatgcaaaa ggcaacctgc tcaatgacgt
     4381 caaggtcacc ttcaatgtta attcagcagc agcgaaactg agccaaaccg aa
//
LOCUS       DAJVUN010000246         4378 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.249, whole genome shotgun sequence.
ACCESSION   DAJVUN010000246 DAJVUN010000000
VERSION     DAJVUN010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4378
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.249"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(4..324)
                     /gene="chbB"
                     /locus_tag="OQQ76_003807"
     CDS             complement(4..324)
                     /gene="chbB"
                     /locus_tag="OQQ76_003807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIB"
                     /protein_id="HCS1970124.1"
                     /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA
                     GEKGLNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK
                     AAAN"
     gene            complement(622..960)
                     /gene="osmE"
                     /locus_tag="OQQ76_003808"
     CDS             complement(622..960)
                     /gene="osmE"
                     /locus_tag="OQQ76_003808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmE"
                     /protein_id="HCS1970125.1"
                     /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMS
                     RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA
                     EYDTDPQAAK"
     gene            1162..1989
                     /gene="nadE"
                     /locus_tag="OQQ76_003809"
     CDS             1162..1989
                     /gene="nadE"
                     /locus_tag="OQQ76_003809"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HCS1970126.1"
                     /translation="MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV
                     LGISGGQDSTLAGKLCQMAINELRQETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ
                     PDRVLTVNIKGAVLASEQALREADIELSDFVRGNEKARERMKAQYSIAGMTSGIVVGT
                     DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDR
                     PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK"
     gene            2219..3106
                     /gene="cho"
                     /locus_tag="OQQ76_003810"
     CDS             2219..3106
                     /gene="cho"
                     /locus_tag="OQQ76_003810"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease Cho"
                     /protein_id="HCS1970127.1"
                     /translation="MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGES
                     DTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ
                     QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIA
                     DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW
                     PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGYKILCKPL
                     LSGNYEITELDPANDQRAS"
     gene            complement(3066..3641)
                     /gene="ves"
                     /locus_tag="OQQ76_003811"
     CDS             complement(3066..3641)
                     /gene="ves"
                     /locus_tag="OQQ76_003811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="environmental stress-induced protein Ves"
                     /protein_id="HCS1970128.1"
                     /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA
                     ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPLQPFAFAADQVVKAKLTEGQM
                     SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFD
                     GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ"
     gene            complement(3844..4314)
                     /gene="spy"
                     /locus_tag="OQQ76_003812"
     CDS             complement(3844..4314)
                     /gene="spy"
                     /locus_tag="OQQ76_003812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-independent periplasmic protein-refolding
                     chaperone"
                     /protein_id="HCS1970129.1"
                     /translation="MRKLTALFVASTLALGAANLAHAAAPADAKPMMHHKGKFGPHQD
                     MMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIVSDTFDKAKAEAQIAK
                     MEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE"
BASE COUNT         1071 a         1087 c         1051 g         1169 t
ORIGIN      
        1 aaattaattt gctgcggctt ttttaatcgc tgcaaccgca gccttaagca cgcctaaacc
       61 atcgactttg ccataaagca gcgagtcaat tacttcaacc ggtttgttgg gtaacaaacg
      121 ctggatttcg ggcaacatat aagcaatctg cggccctaat aacacgacat cggcattcag
      181 acctttttca ccagccagtg tttccggaaa tgcttcaata atgaccggaa cttcatattt
      241 ttctgcctgt gcgcgcattt ttgataccag taaagaggta gacatgcccg cagaacaaaa
      301 cagataaatg tgtttctttt ccataaaact gccctcatcg acgattatct gtcagccaga
      361 cactccgcaa gccttaacct gcttccatgc tctgggtaac ttgcgaaacc aacatgactt
      421 tttttgtggc tgaaaggagt atacggtata gacctgagca atagtatttc tttgacctta
      481 taaattgtct ctccttgacc tgcggttatg accctcttca catttcgggc aaataattcg
      541 cgaagataat taagaactca ggccaaaaaa accggcgcaa tggccggttt ccgttgttac
      601 tcaagctttc aaacgaagtg attacttcgc agcctgtgga tcagtgtcgt attcagcaca
      661 ggtctgataa ccggagttga tgacatgtcc ggtatcatct aacgcgacaa agtaggtttc
      721 tgctttacca tcacgttgac ccaggatgta ggtctggcaa gtaccacgag catggatcat
      781 gctcacttca gacgaaggtt tacccgcaat ttgtgcaacc tgcgcccggc tcatgccttt
      841 tttgacgtct ttcaccacag gctgtacaaa ctggtctttg gtacgatcat aagccgtaca
      901 acccgccagc atggttaata ccgccgctgc actcagaatt cctgccatat tcttgttcat
      961 attccgtcct cttgtttatc agcgtgttag ataagcctgg aatacattgg gcgctttttc
     1021 aagcccgtga acgaaacggc tccgctttca gaggattcct gtatgacgtt ttatccacca
     1081 ttcaacccgc tgtcgcttgt cgtttcagta gcgacgggtt agctttaagg aagttttgtc
     1141 ttttctgtct ggaggggttc aatgacattg caacaacaaa taataaaggc gctgggcgca
     1201 aaaccgcaga ttaatgctga agaggaaatt cgtcgtagtg tcgattttct gaaaagctac
     1261 ctgcaaactt atccgttcat taaatcactg gtgctcggga tcagcggcgg tcaggactcc
     1321 acgcttgccg gtaagctgtg ccagatggcg attaatgagc tgcgccagga gaccggcaac
     1381 gaatcactgc aatttattgc cgtacgcctg ccctatggtg ttcaggccga cgaacaagat
     1441 tgccaggatg ccattgcctt tattcaaccg gatcgcgtat taaccgttaa tatcaagggc
     1501 gcggtattgg ccagcgaaca ggcgctgcgc gaagcggaca ttgaactgag cgattttgtc
     1561 cgtggcaatg aaaaagcgcg tgagcggatg aaagcacaat atagcattgc gggtatgacc
     1621 agcggtatcg tggtgggcac cgatcatgca gcagaagcta ttaccggatt cttcactaaa
     1681 tatggtgacg gcggtacgga cattaatccg ctgtatcgtc tcaacaaacg tcagggtaaa
     1741 cagttactgg cggcattagc ttgcccggaa cacctttata agaaagcgcc aacggccgat
     1801 ctggaagatg atcgcccttc tctgccagat gaagtggctc tcggcgtgac ctatgacaat
     1861 atcgacgact atctggaagg gaaaaacgta cctcaacagg tcgccagaac aatagagaac
     1921 tggtatctga aaaccgaaca taaacgccgt ccgccaatta ccgttttcga tgatttctgg
     1981 aaaaagtaat aatttgcaca tattggattg tgcgaaaaag agtaatttgt tcacgccgga
     2041 tgcggcgtga acgccttatt cgacctataa aactatgcaa attcaataca ttgcaggagt
     2101 cgaataggcc tgacaggcgt agcacgtcag acagtgtaac ctttgtcatc gacccgcctc
     2161 ttttttaatc gcttcccgcc tgttacactg gatagataac cagcattcgg agtcaacagt
     2221 ggtacggcgt ttaacttctc cgcggctcga atttgaagct gcggcaattt atgaatatcc
     2281 cgaacattta cgttcattcc ttaatgactt acccacccga ccaggggtgt atctgtttca
     2341 tggtgaaagt gacaccatgc cgctctatat cggcaaaagc gttaacatcc gcagccgcgt
     2401 cctttctcat ttacgtaccc cggatgaagc cgccatgcta cggcaatccc gacggatcag
     2461 ctggatatgt accgccggtg aaatcggcgc tctgctcctt gaagcgcgat taatcaaaga
     2521 acaacagccg ctgtttaata aacggttgcg ccgcaatcgc cagctctgtg ccctgcaatt
     2581 aaatgaaaag cgcgtcgatg tggtgtatgc caaagaggtg gatttttcac gagcccccaa
     2641 cctgtttggc ctgtttgcca ataggcgcgc agctttgcaa gcattgcaga ccatcgctga
     2701 tgaacaaaaa ctttgttatg gcctgctggg actggaaccg ttaagtcgcg gtcgtgcatg
     2761 ttttcgttca gcgctaaaac gttgcgccgg agcatgctgc ggtaaagaga gccatgagga
     2821 acatgcgcta cgcttgcgcc agtctctgga gcgtttgcgg gtggtgtgtt ggccttggca
     2881 aggagcggtg gcgctgaaag aacagcaccc ggaaatgact caatatcata ttattcaaaa
     2941 ctggctgtgg ctgggggcgg ttaattcgct ggaagacgcg acaacgttaa ttcggacacc
     3001 cgccgggttt gatcacgacg gttataaaat tctttgtaag ccgctgcttt ccggtaacta
     3061 tgaaattact gaacttgatc cggcgaatga ccagcgagcc agttgatttc actgaacaac
     3121 agtttacctt gcggttgtaa aagccgcagg gtgtgcctgc catcgaacca gcacgcgccc
     3181 tggtcggtag tgagcaattt atcgcccagt tgccacgccc cgttaatcac aaacaccacc
     3241 ccgccgcgtg agccaaaggt agtaaacgta cgttcggcaa ttctgacttt cgccttacag
     3301 acatccaggc gtgtcatgat gttgaaatcc atcgacatct gcccttccgt cagtttcgct
     3361 tttaccacct ggtccgctgc aaaggcaaaa ggctgtaacg gttttaaggt atggttaaag
     3421 cggtctgcgc tttcaaggag catctcgccg ccttccagca acgtcactat cctttccatg
     3481 ccgggaaaca aagaaaactc cccattcgcc gcgatggatg caatgctggc acgccagtaa
     3541 aaatcacgtt ttgccggtgg gaaagtgcaa atttcgcgcg tttcaccggc agcatttcgc
     3601 cacagattca ccgacatttt acgcatatca aagtattcca tactcgctcc cggcccgttc
     3661 ttttcattgt tatcgttcag gtaaccgtgg atggttatcg gcaactcggg tgatttacgt
     3721 tagttgtgat caggcttttt ttacaactgt ttgagaagag aaaagaaaac cgccgatcct
     3781 gtccaccgca ttactgcaag gtagtggaca agaccggcgg tcttaagttt tttggctgaa
     3841 agattattca gcagttgcag gcattttacc ttttgccgct ggacgttctg tcagacgctt
     3901 ctcaaaatta gcattaaatt gctttttctg ttccggcgtc aggatgttgt aaattttgtt
     3961 ctgggtttcc atgtgcgcca gcatgttagc tttgcgctgt tcttccattt ttgcgatctg
     4021 cgcttcagct tttgctttat cgaaggtatc gctgacaatg atgtcatgca ttgcgcggcg
     4081 ttcttccagc ggcggacgtt tcatctggtc acgctggcct ttcatgattt cgcggatctg
     4141 ctgtttctgc gcgtcggtca ggttcaggtc tttgaacatc atgtcctgat gcggaccgaa
     4201 cttgcctttg tggtgcatca tcggcttcgc gtcagccggt gctgcggcat gggccaggtt
     4261 agccgcgcca agagccaggg tagaggcaac aaacagtgca gttaatttac gcatattcta
     4321 tatccttcct ttcagttatt tattacggct ttcttaagta gcgtgccgtg ttgacgag
//
LOCUS       DAJVUN010000247         4323 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.250, whole genome shotgun sequence.
ACCESSION   DAJVUN010000247 DAJVUN010000000
VERSION     DAJVUN010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4323
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.250"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..212)
                     /locus_tag="OQQ76_003813"
     CDS             complement(<1..212)
                     /locus_tag="OQQ76_003813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HCS1970130.1"
                     /translation="MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKF
                     RASGQPVFLVRVGWSADYAEALKQPV"
     gene            522..2294
                     /gene="aspS"
                     /locus_tag="OQQ76_003814"
     CDS             522..2294
                     /gene="aspS"
                     /locus_tag="OQQ76_003814"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HCS1970131.1"
                     /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI
                     VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII
                     NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
                     ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD
                     EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE
                     RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI
                     DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMI
                     FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP
                     FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE
                     EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE
                     APSFANPTALAELSIQVVKKAENN"
     gene            2412..2864
                     /gene="nudB"
                     /locus_tag="OQQ76_003815"
     CDS             2412..2864
                     /gene="nudB"
                     /locus_tag="OQQ76_003815"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HCS1970132.1"
                     /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE
                     EGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESW
                     FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA"
     gene            2893..3633
                     /locus_tag="OQQ76_003816"
     CDS             2893..3633
                     /locus_tag="OQQ76_003816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCS1970133.1"
                     /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD
                     ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL
                     SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAE
                     DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR
                     LIDMLEDCDDVQEVYHNGEISDEIAATL"
     gene            3668..4189
                     /gene="ruvC"
                     /locus_tag="OQQ76_003817"
     CDS             3668..4189
                     /gene="ruvC"
                     /locus_tag="OQQ76_003817"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005068993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HCS1970134.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR
                     LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY
                     AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM
                     SESRLNLARGRLR"
BASE COUNT         1069 a         1074 c         1213 g          967 t
ORIGIN      
        1 tcaaccggct gttttaatgc ttcggcgtaa tcggcagacc agccaactcg caccagaaac
       61 acgggctgac cgctggcgcg aaatttcgcc gccagcttcc cggcgcgatt aactacctca
      121 tcggcagtat gtggaccacc ggcaaaaggt aagatgcctt cttgtaaatc gatcaccacc
      181 aacgcagtgg ttttagcatt aagttcaagc atgctgactc ctgaaaaaac aaaatcgtgc
      241 ctcatacctt aatgcgatta gccgatggcg gaacgacaaa ttttgttaat gtttatgagt
      301 tcgggcaaca cctttatagc aaactggcgt agagtctgat ttcaggcccg atataaagtg
      361 gtaacgaggc gttccagcgc gggccaggct cttacggtgc ggcagaattt ccagtataat
      421 agccgccttt tttcattcag ttgtgacata cagctaacgc tgcgacttgg tcacctgcgc
      481 agcagggggc atccgccggc agctaagtta agggatatct catgcgtaca gaatattgtg
      541 gacagctccg tttgtcccac gtggggcagc aggtgactct gtgtggttgg gtcaaccgtc
      601 gtcgtgatct tggtagcctg atcttcatcg atatgcgcga ccgcgaaggt atcgtgcagg
      661 tatttttcga tccggatcgt gcggacgcgt taaagctggc ctctgaactg cgtaatgagt
      721 tctgcattca ggtcacgggc accgtacgtg cgcgtgacga aaaaaatatt aaccgcgata
      781 tggcgaccgg cgaaatcgaa gtgctggcgt cctcgctgac tatcatcaac cgcgcagatg
      841 ttctgccgct tgactctaac cacgtcaaca ccgaagaagc gcgtctgaaa taccgctacc
      901 tcgacctgcg tcgtccggaa atggctcagc gcctgaaaac ccgcgctaaa atcaccagcc
      961 tggtgcgccg ttttatggat gaccacggct tcctcgacat cgaaactccg atgctgacca
     1021 aagccacgcc ggaaggcgcg cgtgactacc tggtgccttc tcgtgtgcac aaaggtaaat
     1081 tctacgcact gccgcaatcc ccacagttat tcaaacagct gctgatgatg tccggttttg
     1141 accgttacta tcagatcgtt aaatgcttcc gtgacgaaga cctgcgcgct gatcgtcagc
     1201 ctgagtttac tcagatcgat gtggaaactt ctttcatgac cgcgccgcaa gtgcgtgaag
     1261 tgatggaagc gctggtgcgt catttgtggc tggaagtgaa gggcgtggat ctgggcgatt
     1321 tcccggtaat gacctttgcg gaagcagaac gccgttatgg ttctgataaa ccggatctgc
     1381 gtaacccgat ggaactgacc gacgttgccg atctgctgaa atctgttgag tttgcagtat
     1441 ttgcggggcc ggcgaacgat ccgaaaggcc gtgttgccgc tctacgtgtt ccgggtggcg
     1501 catcgctgac ccgtaagcag atcgacgaat acggtaactt cgttaaaatc tacggcgcga
     1561 aaggtctggc ttacatcaaa gttaacgaac gcgcgaaagg tctggaaggt atcaacagcc
     1621 cggtagcgaa gttccttaat gcagaaatca tcgaagccat cctggatcgt actgccgcgc
     1681 aagatggcga tatgattttc ttcggtgccg acaacaagaa aattgttgcc gacgcgatgg
     1741 gcgcactgcg cctgaaagtg ggtaaagacc ttggtctgac cgacgaaagc aaatgggcac
     1801 cgctgtgggt tatcgacttc ccgatgtttg aagacgacgg tgaaggcggc ctgacggcaa
     1861 tgcaccatcc gttcacctca ccgaaagaca tgactgctgc agaactgaaa gctgcaccgg
     1921 aaaatgcggt ggcgaacgct tacgatatgg tcatcaatgg ttacgaagtg ggcggtggtt
     1981 cagtacgtat ccataatggt gatatgcagc agacggtgtt tggtattctg ggtatcaacg
     2041 aagaggaaca gcgcgagaaa ttcggcttcc tgctcgacgc cctgaaatac ggtactccgc
     2101 cgcacgcagg tctggcattc ggtcttgacc gtctgaccat gctgctgact ggcaccgaca
     2161 atatccgtga cgttatcgcc ttcccgaaaa ccacggcggc agcgtgtctg atgactgaag
     2221 caccgagctt tgctaacccg actgcactgg ctgagctgag cattcaggtt gtgaagaagg
     2281 cagagaataa ctgatatgac tcaaatacac gaaatcattc gcgttgcatc aaggcggcaa
     2341 ttgagtgaac tcccatgagc atagataact atgtgaatgg gatgagcgaa ggcagtcaac
     2401 gaagaggcag cgtgaaggat aaagtgtata agcgtcccgt ttcgatctta gtggtcatct
     2461 atgcacaaga tacgaaacgg gtgctgatgt tgcagcggcg tgacgatccc gatttctggc
     2521 agtcggtaac cggcagcgtg gaagagggtg aaaccgcgcc gcaagctgcc atgcgcgaag
     2581 taaaggaaga ggtcaccatt gatgttgtcg ctgaacaact gaccttaatt gactgtcagc
     2641 gcacggtaga gtttgaaatt ttttcacatt tacgtcatcg ctatgcgccg ggcgtgacgc
     2701 gtaatacgga atcatggttc tgtcttgcgc ttccgcatga gcggcagatc gttttcactg
     2761 aacatctggc ttacaagtgg cttgatgcgc ctgctgcggc ggcgctcact aagtcctgga
     2821 gcaaccggca ggcgattgaa cagtttgtaa ttaacgctgc ctgaacaggc agggctatct
     2881 ggagatattt ttatggcagg tcatagtaaa tgggccaaca ccagacatcg taaagctgcg
     2941 caggatgcta agcgcggtaa aatcttcact aaaatcattc gtgagctggt aaccgcggct
     3001 aagctgggcg gtggcgatcc ggacgctaac ccgcgtctgc gtgcggcggt ggataaagca
     3061 ctgtctaaca acatgacccg tgacacactg aaccgcgcaa ttgcacgtgg tgtgggcggt
     3121 gatgatgatg caaacatgga aaccatcatc tacgaaggtt acggtcctgg cggcacggca
     3181 atcatgattg aatgtctgtc tgacaaccgc aaccgtaccg ttgctgaagt gcgtcatgca
     3241 ttcagcaaat gtggcggtaa cctcggtaca gatggttccg tagcctatct gttcagcaaa
     3301 aaaggcgtga tctccttcga gaaaggcgat gaagacacca tcatggaagc agctctggaa
     3361 gcaggtgctg aagacgttgt gacctatgat gacggcgcga ttgatgtcta cactgcatgg
     3421 gaagaaatgg gtaaagtgcg cgacgctctg gaagcggcag gtctgaaagc agacagcgcg
     3481 gaagtttcca tgatcccgtc caccaaagct gatatggatg cagaaaccgc accgaaactg
     3541 atgcgtctga tcgatatgct ggaagattgc gacgacgtgc aggaagttta ccataacggt
     3601 gaaatctctg atgagattgc agcgactctc tgatgaggcc tgctaaacag caaaacggag
     3661 acgcgtgatg gctattattc tcggcattga cccgggttcg cgcgtgaccg gctatggcgt
     3721 catccgccag gtaggcaggc aactgtccta cctgggtagc ggatgcatac gcaccaaggt
     3781 ggatgattta ccgtctcgtc tgaagctcat ctatgcgggt gtgacggaaa tcatcaccca
     3841 gttccagcca gattatttcg ccattgaaca agtctttatg gccaaaaatg ccgactcggc
     3901 tctgaaactg gggcaggcgc gcggcgtggc gattgtggcg gcggtgaatc aggaattgcc
     3961 ggtatttgaa tatgcggcac gtcaggtaaa gcaaacggtg gtaggtattg gtagtgccga
     4021 aaaaagtcag gtgcagcata tggtccgcac cttgctgaaa ctgcccgcta atccacaggc
     4081 ggatgccgcc gatgcgttag ctatcgcgat tacccattgt cacgtcagcc agaatgcaat
     4141 gcagatgagc gaatcgcggc tgaacctggc gagagggcga ctgcgttaag ttataccgcc
     4201 tcggtcagtt caggctgagg cgtttcaact ccctccgcgt gaatcaacac caaacccgga
     4261 tgatgccaca aactggctgg cgtgacggtt ttacgctccc acggaataga acctaagaac
     4321 cag
//
LOCUS       DAJVUN010000248         4322 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.251, whole genome shotgun sequence.
ACCESSION   DAJVUN010000248 DAJVUN010000000
VERSION     DAJVUN010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4322
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.251"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..113)
                     /locus_tag="OQQ76_003818"
                     /pseudo
     CDS             complement(1..113)
                     /locus_tag="OQQ76_003818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080164.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            185..367
                     /locus_tag="OQQ76_003819"
     CDS             185..367
                     /locus_tag="OQQ76_003819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001296208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein"
                     /protein_id="HCS1970135.1"
                     /translation="MNHPVIGVVTKADLASMEQISLVKSWLREAGAHNVLVTSAVNNN
                     GVTELFALLHTEEGCC"
     gene            complement(468..797)
                     /locus_tag="OQQ76_003820"
     CDS             complement(468..797)
                     /locus_tag="OQQ76_003820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310836.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HCS1970136.1"
                     /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLL
                     LDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGE
                     MKNGEAK"
     gene            complement(969..1487)
                     /locus_tag="OQQ76_003821"
                     /pseudo
     CDS             complement(969..1487)
                     /locus_tag="OQQ76_003821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416512.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1582..2562)
                     /locus_tag="OQQ76_003822"
     CDS             complement(1582..2562)
                     /locus_tag="OQQ76_003822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element IS621 family transposase"
                     /protein_id="HCS1970137.1"
                     /translation="MEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELV
                     SWLKGHKIDHAHICIEATGTYMKPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTD
                     TVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQR
                     PSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGL
                     KDRFAHARQFAAFAGLTPRRYESGSSVKGASRMSKAGHVSLRRALYMPAMVATSKTEW
                     GRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA"
     gene            complement(2626..3306)
                     /locus_tag="OQQ76_003823"
     CDS             complement(2626..3306)
                     /locus_tag="OQQ76_003823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001200880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HCS1970138.1"
                     /translation="MRADKSLSPFEIRVYRHYRIVHGTRVALAFLLTFLIIRLFTIPE
                     STWPLVTMVVIMGPISFWGNVVPRAFERIGGTVLGSILGLIALQLELISLPLMLVWCA
                     AAMFLCGWLALGKKPYQGLLIGVTLAIVVGSPTGEIDTALWRSGDVILGSLLAMLFTG
                     IWPQRAFIHWRIQLAKSLTEYNRVLYYPSSAEKIGQFSLPAVRMPYRALGSNLLRRFM
                     QRTAFLPK"
     gene            complement(3504..3977)
                     /gene="sbmC"
                     /locus_tag="OQQ76_003824"
     CDS             complement(3504..3977)
                     /gene="sbmC"
                     /locus_tag="OQQ76_003824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor SbmC"
                     /protein_id="HCS1970139.1"
                     /translation="MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP
                     KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV
                     GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH"
     gene            complement(4096..>4322)
                     /locus_tag="OQQ76_003825"
     CDS             complement(4096..>4322)
                     /locus_tag="OQQ76_003825"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416514.4"
                     /note="removes C-terminal D-alanyl residues from
                     sugar-peptide cell wall precursors; penicillin-binding
                     protein 6B; one of four, DD-carboxypeptidase low-molecular
                     weight penicillin-binding proteins that remove terminal
                     D-alanine from pentapeptide side chains; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase DacD"
                     /protein_id="HCS1970140.1"
                     /translation="FWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDK
                     QVAHWPLVTLESVGEGSMFSRLSDYFHHKA"
BASE COUNT         1076 a         1129 c         1027 g         1090 t
ORIGIN      
        1 actacgttcc atggcaggag ttcgtcaaca cggttggagg gccattccgg cagtatgctc
       61 agaatatggc gcagatacgc ttccggatcg atatcgttca gacggcaggt gcctgctttt
      121 ctggcaacaa gcaggaatct cagcgctgaa gcaggaatta gaggtaaaaa cgccctaccg
      181 ggccatgaat cacccggtca ttggagtagt aaccaaagca gatttagcca gcatggaaca
      241 aatatctttg gtgaaaagtt ggttacggga agctggagcg cacaacgtgt tagtaaccag
      301 tgcagttaat aacaatggag ttacagaact ttttgccttg ctgcatacag aagaaggctg
      361 ttgttaattt cgattggttc tcggatgaga atgatgacgg tgatacacag ataagaatca
      421 atgagcaatg agggttgccg ggcaaccctc attgaataaa acgggaatta cttcgcttcg
      481 ccgtttttca tttcgcccat agctttcagc tttttggaga tatcgcggcg ttctttggag
      541 agctcggcat ttttgatgat gtaatcgtca acgcgatctt catagtcacc tttcatgctg
      601 gcgatgatgc cctggattgc ttcaacgctc atccccggct tgatgtaatc gctcaggttg
      661 tccagcagca ggacgcgctt ctggttgtca cggatctttt tctcaacgtc ctgaatttca
      721 cgttgcagtt tgttcttacg acggaacaga cgaacaaatt ccagtacgtc ctggaatgaa
      781 ggcttggtag tttccatttt tatacccctg ataatgtgag agtcggattc gtttaagcaa
      841 ccgctattcg ttagggccaa cattactcat agctgccgca gatgacaatg cttttatccc
      901 ttttcactat catacccttt atccttgctg aatcgaagca gcagcaagat gattctgaag
      961 ttcaggaatt atttgcgcaa ggcccggcaa atcagattcg atagcaactc aagctgatgc
     1021 gccgtttcca tgttcagcca cacataacca tagattggtg tttccacaac cttcaggtca
     1081 tggtggttat tgagcaactg acgcagctct tccacagcat cgttcaattt ttccgtattg
     1141 gcaaaaaccg gctgcggatt accttcgtac agcgcatgaa caaggctcag cagtatttgc
     1201 tgcatcatgt gctgggtatc acgaagtttt tgcgcgttca ataacacgaa atggctgggg
     1261 cgcgtggccc agtatgcatt gatttgcaac tccagcatac aaaccagatt gcggttaatg
     1321 gtctggatac cttcatatat cgattttgga atacgggttt ctttgctggc gggcgcaatc
     1381 agtccacgca ttttcacggc atcggtcagg agtttttgta gatggctttc cagacgtggg
     1441 cgttcgagta agttcggtga gaatgcagat tgatagatac tgttatggcc tgcaagtttt
     1501 ttcctggtcc ggtttcccgg attgtaggca tgccagacac agcgccgtca ggcgctgttt
     1561 ttttcatccc ttccgcgatt tttacgccgc taccggatta tgccgtgacg catcgaacgg
     1621 cacgcctgac ttcagcactc catacgccac ctgtgccagc ttgcgcatca tcgcgccgag
     1681 aatcaccttt cctttcttgc cattagccgc cagacggtcg cggaacgccc gtccccactc
     1741 agtcttactg gtggctacca ttgcgggcat atacaacgcc ctgcgaagcg acacatgtcc
     1801 ggccttactc atccggctcg cccctttcac actgctacct gattcataac gccgtggtgt
     1861 cagacccgca aaagcggcga actgtctggc atgggcgaag cggtccttca gaccgatata
     1921 agccagcaat accgcagatg ttttctctcc gatacccggg atgctttcca gcagtttcct
     1981 gcggtgtttc atatccggat catcgtctgt caggtctttt atctgcttct caagacgctt
     2041 cagctctgct tcaagccaca gaaggtgagc atcaatgctc ggtctctgga cttcccgcgc
     2101 cgtttcagtg cgattcagtt cctgcgtgtg catatctgtc agcgcctggt ggcggactac
     2161 cagggcacgc aacgcgcgtt caagcgggtg aggcgcttcc caggctgcag ggcgcttctg
     2221 acgacagaac tctgccagca tgcgcgcatc cacggtatca gtcttgttac gcagtccttc
     2281 actctgagcg aaagctttac ccagcgcagg attaatgact gacactatgt agccagcatc
     2341 gtaaaggcac tcagcgacag gtttcatata ggtgccggtc gcttcgatgc agatatgcgc
     2401 atggtcaatc ttgtgacctt tcagccagct caccagctca tcgtgccctt tagtggtgtt
     2461 agcgaatttt ttggtgcgat gacgaccatc aggacgcaac acatcgacat ccagtttctc
     2521 tttagcggtg tcgataccga tataatgaag ttcatgttcc atagtgaaac caaccttgca
     2581 aatacggatt accgggaaaa ccggtccatg atactgtccg gtttatcatt ttgggagaaa
     2641 ggcagtccgc tgcataaatc tacgcaacag gttagaaccc aaggcccgat acggcatgcg
     2701 gactgcaggc agagaaaact ggccgatttt ctctgcactg gagggataat acaagacccg
     2761 attatactcg gtcagacttt tcgccagttg aatgcgccag tggatgaacg cccgttgtgg
     2821 ccagataccg gtaaacaaca ttgccagtaa agagccgagg atcacatcgc cgcttcgcca
     2881 taacgccgta tcaatttcac ctgtcgggga acccacaaca attgccagcg tcaccccaat
     2941 caataaacct tgatacggtt tcttgcccag cgccagccaa ccgcaaagga acatggccgc
     3001 cgcgcaccag actaacatca gcggtaacga gattaactcc agttgcagag cgataagacc
     3061 taaaatcgaa cccaacaccg taccgccaat acgctcaaag gcgcgaggga caacgttacc
     3121 ccagaacgag attggcccca taatcaccac catggtgacc agcggccagg tgctttccgg
     3181 gatagtaaac aggcggataa tgagaaaagt gagcaggaat gccagcgcga cccgagtacc
     3241 atgcacaatg cggtaatggc ggtatacccg gatttcaaac gggcttaatg acttatcggc
     3301 acgcacgcag aaactccgta atgagattaa aagcgctcat aactcatctg tcggccagaa
     3361 ggcgcgcctc tgaattatcc gacggacaaa ccgggaacag tgtaatttcc cggcaggagc
     3421 gaaaaaattg aaaggcgcat cttactcttt tcgctttcaa aaaaaagagt ggtcatcgcg
     3481 ttaacacacc gccctgagat gaattagtga tgttttggct gcaccgcaac atacatttcg
     3541 atatcccagt acccatcttc cgcgccattg ttcaaataaa cctcgaagca gggctttggt
     3601 aacatttcat aagcactgtc ctgcaagaga ctattaaaga actgatacca gggtttagca
     3661 aaatcatcac cgactacacg agctaccgcc accgcatact gaccacctgt aatttctgtc
     3721 agaatgacgc cctcactgtt ttcgggaagc gtaaagtaac ccggcaccgt cacgacggtg
     3781 tcgcagcgta atttttcggc gggtgtttca tctggattgt cgtaatagac agcaacccac
     3841 tccttcggca caatattttt gctatctacc cacatcatca actgctcaaa gcctttcttt
     3901 accgtctgtt cccacgggcc aacgagatgg aaacctgcaa cggtacgttt ctcttcctgc
     3961 ttaatctcgt agttcatgac gcctccattg atactgtttt tatatacagt atagttgcaa
     4021 aattaaaacc acaaggaatg agtgttgatt atgcgagcag actcgcactc ctgccagtct
     4081 gctgcaaaag aaaggtcagg ccttatggtg gaaataatca ctcaggcgag aaaacatgct
     4141 gccttccccg acagattcca gggtaaccag cggccagtgc gccacctgtt tatcacggtc
     4201 gtaaagttca atttccccta cccgctgatg ggcgctaatt ggcgcggtga gttctttacc
     4261 atcaagggta tatttggctt tgatatgtgg aatttcggct ttcggtagca ccatccagaa
     4321 ct
//
LOCUS       DAJVUN010000249         4295 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.252, whole genome shotgun sequence.
ACCESSION   DAJVUN010000249 DAJVUN010000000
VERSION     DAJVUN010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4295
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.252"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            46..2208
                     /gene="ybiO"
                     /locus_tag="OQQ76_003826"
     CDS             46..2208
                     /gene="ybiO"
                     /locus_tag="OQQ76_003826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001267224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel protein"
                     /protein_id="HCS1970141.1"
                     /translation="MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQ
                     KKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEV
                     SRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCAL
                     PLYRKMGLWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRT
                     IAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIHDETARYWSRRLSWLSSLIG
                     YGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLA
                     FFSLFIRAFALVWRWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSG
                     MFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFD
                     FWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRT
                     LLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV
                     FIQFENGMNTGDLVTIGPLTGTVKRMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGI
                     GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTL
                     RVSFTTLPLKQWTVRFALDSQVKKHFDLVGVRAPVQTY"
     gene            complement(2268..3194)
                     /gene="rlmF"
                     /locus_tag="OQQ76_003827"
     CDS             complement(2268..3194)
                     /gene="rlmF"
                     /locus_tag="OQQ76_003827"
                     /EC_number="2.1.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
                     /protein_id="HCS1970142.1"
                     /translation="MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSV
                     DFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP
                     ANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLR
                     RQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGG
                     QQQELWCEGGEVAFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVV
                     KKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR"
     gene            3470..3730
                     /locus_tag="OQQ76_003828"
     CDS             3470..3730
                     /locus_tag="OQQ76_003828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415327.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1970143.1"
                     /translation="MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATG
                     ASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK"
     gene            3995..>4295
                     /locus_tag="OQQ76_003829"
     CDS             3995..>4295
                     /locus_tag="OQQ76_003829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HCS1970144.1"
                     /translation="MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTL
                     VVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPG"
BASE COUNT          997 a         1131 c         1078 g         1089 t
ORIGIN      
        1 gcatctatac ttatcttttt gctctgtttt ctcacaggag gagtcatgcg gtggatcctg
       61 ttcatcctct tctgcctgct gggcgcacct gcccacgcgg tatccatacc cggcgttaca
      121 accacaacga caacggactc aacgactgaa ccggccccgg aaccggatat cgaacaaaaa
      181 aaagcggcct atggcgcact ggcggatgtg ctggataacg acacctcgcg taaagaattg
      241 atcgaccagt tgcgtactgt cgccgcgacg ccccctgcgg aaccggtccc gaagatcgtg
      301 ccgccgacgc tggttgaaga gcaaaccgtg ctgcaaaagg tcaccgaagt cagccgccat
      361 tatggtgaag ccctttccgc ccgcttcggg caactttatc gcaatattac cggctccccg
      421 cataagccgt ttaatccaca aacattcagc aatgcgctga cccatttttc aatgttagcg
      481 gtattagtgt ttggttttta ctggctgatt cgcctgtgcg cactgccgct gtatcgcaaa
      541 atgggcctgt gggcgcggca aaaaaatcgt gagcgcagta actggttgca gcttccggcg
      601 atgattatcg gggcgtttat tatcgaccta ctgttactgg cactgacatt atttgtcggc
      661 caggtattaa gcgacaacct gaatgcaggc agtcgcacca tcgctttcca acaaagtttg
      721 tttctcaacg cctttgccct gattgaattt ttcaaagctg tactacgcct gattttttgc
      781 ccaaacgtgg ctgaactgcg cccgttcacg attcatgacg agaccgcccg ttactggagt
      841 cgtcgcctga gctggttaag cagtttgata ggttatggcc tgattgtggc cgtgccgatt
      901 atctctaatc aggtgaatgt acagataggt gcgctggcga acgtcatcat tatgctgtgc
      961 atgaccgtct gggcgttgta cctgatcttt cgcaataaaa aagagattac ccaacatttg
     1021 ctcaactttg cggagcattc gctggccttt ttcagcctgt ttatccgcgc ctttgcgctg
     1081 gtgtggcgct ggctggcaag cgcctatttt atcgtgctgt ttttcttttc gttgttcgat
     1141 ccgggcaaca gcctgaaatt tatgatgggt gcaacggtgc gcagcctggc gattattggt
     1201 atcgcagcgt ttgtttccgg tatgttttcc cgctggctgg cgaaaaccat caccctctcg
     1261 ccacatactc agcgtaacta tccggagttg caaaaacggc tgaatggctg gctttcggcg
     1321 gcgctgaaaa cggcgcgtat tctgaccgtc tgcgtggcgg taatgttgct gttgagcgca
     1381 tggggattgt tcgatttctg gaactggctg caaaacggtg cggggcagaa aaccgtagat
     1441 atcctgatcc gtatcgcact tattcttttt ttctcggcgg ttggctggac ggtgctcgcc
     1501 agtttgatcg aaaaccggct ggcttcggat attcatggcc gcccgctacc cagcgcccgt
     1561 acgcgtaccc tgctgacgct gtttcgtaac gcgctggcgg tgattatcag taccatcacc
     1621 atcatgattg tgttgtcgga aatcggcgtc aatatcgcgc cattgctggc aggtgccggg
     1681 gcattaggtc tggctatctc gtttggttcg caaacgctgg tgaaagatat cattaccggg
     1741 gtgtttattc agtttgaaaa cggcatgaac actggagatt tggtgactat cgggccgttg
     1801 accggcacag tgaaacggat gtcgattcgc tccgtgggcg tgcgccagga taccggggcg
     1861 tatcacatca ttccgtggtc ttcgataacc acctttgcta acttcgtccg cggtattggt
     1921 tcggtagtgg caaactacga tgttgatcgc catgaagatg ctgataaagc caatcaggca
     1981 ctgaaagatg cggtagcgga attgatggaa aacgaagaaa ttcgcgggct gattattggt
     2041 gaaccgaatt ttgccgggat tgtcggctta agcaataccg cgtttacact gcgtgtttcg
     2101 ttcaccacgc tgccactcaa acagtggacg gtacgctttg ccctcgacag ccaggtgaaa
     2161 aaacatttcg acctggtggg cgttcgcgcg ccagtgcaga cttattaggt gctgcctact
     2221 ccgggcgcga ccccggctga accgttaccg ccgggggagc caacgcttta acgctggcga
     2281 ttgacaaaac ggcggcgctg ctcgtcgttc ataaaggtcc aggcaataaa gcgactctgc
     2341 ttttgcccct gggccatctc tttttttacc accttcaccg cgcccacgtc ggtcagagca
     2401 cgatacaacg gcggtaagtt ttcaccacga gataccagcg aggtaaacca catcacctgc
     2461 ttcgcgaagc ctttgctctc ttcaatcatc tttttgataa aggcgacttc accaccttca
     2521 caccacaact cctgttgctg accaccaaag ttcagtgcat cgtctttgtt cagccccagg
     2581 ttacggcgtt tacgctcact acctgcccgc gctgcagcgg cggaatcgtg gaatggcggg
     2641 ttacacaagg tcgcgtcgta ttgctcgttt ttatggatga tgccgttaaa aattgcccca
     2701 ctttcttttt gccgacgcag acgaatggcg cggttaagcc ccggattagc actgataatc
     2761 gcctgcgcac tgcttaacgc ctggctgctg gtttcactac cggtaaaacg ccagccatat
     2821 tcatgtacgc caatcagcgg ataaatacag ttcgcaccaa cgccgatatc cagaatgctg
     2881 gcattcgctg gaattgttcc gcttgcttca gccagtaaat cggcaaggtg atgaatataa
     2941 tccgcccggc ccggtactgg tgggcagaga aaaccgtcgg ggatatccca gttcgctacg
     3001 gcgtaaaaat gggccagcaa cgccttattg agcgccttca ccgccagcgg attggcaaag
     3061 tctacgcttt gctccccggc gggtgtaagc gtgaggaatt gcctgagttc aggattgacc
     3121 tgacaaagcg tggcgagatc gtagcggctg tgatgacggt tgcgcggatg caaccccggt
     3181 ttctgggcgg acatagcatt ctcctttaag cagcggcgta agatacccgc ataacgcgac
     3241 agggtaaata tctggctgcg tttatcattc cccaaaacct taacatggct atggtttatg
     3301 gcaattcatc ataaaaatca gcattatgca tgtcattgat ttgtcttatt ttgtaaaaat
     3361 atatcgttca aaaaataagc acacctctgt caattttttg cgtcatttgc atcgcgcagg
     3421 cgacctacac ttatcaggca ctacccgttg tatttatgag gatgtcatta tgaaaaagtg
     3481 cctcacacta ctgattgcca ccgtcctgag cggaatctct ctcacggctt atgccgcgca
     3541 accgatgagt aacctggaca gcggtcagct acggcccgcc ggtaccgttt cggcaactgg
     3601 cgcatcaaac ctaagcgatc tggaggataa actggcagaa aaagcgcgcg aacaaggcgc
     3661 gaaaggttat gtcattaatt ccgcaggcgg aaatgaccag atgttcggta ctgcaaccat
     3721 ctacaaataa ccccaccaac gtaactgcat tcgcctctgg atgcagtttt cgcctgtttt
     3781 gtaatcaaaa aacatcaaat atgaactcaa tgtaaataaa tgtatttctt tttcgcgcaa
     3841 tgggtgatag aaaatcgcgc caagtgataa tgattatcaa aattattatc acttgcacga
     3901 acactatcac gggattaaca gtggcatcgc atccgcagag atgctttctc gtggcagtga
     3961 aaatttcaac atataagaaa aagtcacctg caaaatggaa aacaatcgca atttccctgc
     4021 cagacaattt cattcgctca cgttctttgc cggtctttgt attggcatca cgcctgtggc
     4081 tcaggcactc gccgccgaag ggcaaactaa cgcggatgac acgctggttg tcgaagcatc
     4141 aacgccttcg ctttatgcgc cacaacaatc tgccgatccg aaattctcgc gtccggtagc
     4201 ggatactacc cgcacgatga cggtgatttc tgaacaagtg attaaagatc agggcgcaac
     4261 caaccttacc gacgcgctca aaaacgtccc cggcg
//
LOCUS       DAJVUN010000250         4283 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.253, whole genome shotgun sequence.
ACCESSION   DAJVUN010000250 DAJVUN010000000
VERSION     DAJVUN010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4283
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.253"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..309)
                     /gene="tuf"
                     /locus_tag="OQQ76_003830"
     CDS             complement(<1..309)
                     /gene="tuf"
                     /locus_tag="OQQ76_003830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HCS1970145.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA
                     I"
     gene            complement(424..499)
                     /locus_tag="OQQ76_003831"
     tRNA            complement(424..499)
                     /locus_tag="OQQ76_003831"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(464..466),aa:Thr,seq:ggt)
     gene            complement(506..580)
                     /locus_tag="OQQ76_003832"
     tRNA            complement(506..580)
                     /locus_tag="OQQ76_003832"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(545..547),aa:Gly,seq:tcc)
     gene            complement(697..781)
                     /locus_tag="OQQ76_003833"
     tRNA            complement(697..781)
                     /locus_tag="OQQ76_003833"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(745..747),aa:Tyr,seq:gta)
     gene            complement(790..865)
                     /locus_tag="OQQ76_003834"
     tRNA            complement(790..865)
                     /locus_tag="OQQ76_003834"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(830..832),aa:Thr,seq:tgt)
     gene            1227..2177
                     /gene="coaA"
                     /locus_tag="OQQ76_003835"
                     /gene_synonym="panK"
     CDS             1227..2177
                     /gene="coaA"
                     /locus_tag="OQQ76_003835"
                     /gene_synonym="panK"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HCS1970146.1"
                     /translation="MSIKEQTLMTPYLQFDRNQWAAQRDSVPMTLSEDEIARLKGINE
                     DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS
                     TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV
                     SDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVF
                     VSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMT
                     LWKEINWLNLKQNILPTRERASLILTKSANHAVEEVRLRK"
     gene            complement(2206..3171)
                     /gene="birA"
                     /locus_tag="OQQ76_003836"
     CDS             complement(2206..3171)
                     /gene="birA"
                     /locus_tag="OQQ76_003836"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HCS1970147.1"
                     /translation="MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR
                     DWGVDVFTVPGKGYSLPEPIQLLNAEQILGQLDGGSVAVLPVIDSTNQYLLDRIGELK
                     SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEV
                     LRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESV
                     VNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPV
                     KLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK"
     gene            complement(3168..4196)
                     /gene="murB"
                     /locus_tag="OQQ76_003837"
     CDS             complement(3168..4196)
                     /gene="murB"
                     /locus_tag="OQQ76_003837"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HCS1970148.1"
                     /translation="MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVL
                     ILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMP
                     GLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDCVELATGKQVRLTAKECRFGYRD
                     SIFKHEYQDRFAIVAVGLRLLKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKL
                     PDPKVNGNAGSFFKNPVVSAETAKALLAQFPTAPNYPQAGGSVKLAAGWLIDQCQLKG
                     MQMGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGE
                     VSAVETIS"
BASE COUNT         1094 a         1067 c          967 g         1155 t
ORIGIN      
        1 gatcgcgccg tccatctgag cagcaccggt gatcatgttt ttaacatagt cggcgtgccc
       61 cgggcagtct acgtgtgcgt agtgacgggt cggggtgtcg tattcaacgt gagaagtgtt
      121 gatggtgata ccacgagctt tttcttccgg cgcgttatcg atctggtcga atgcgcgagc
      181 agcaccgccg taggttttag ccagtacggt agtgattgca gcggtcagcg ttgttttacc
      241 atggtcaacg tggccgatag taccgacgtt aacgtgcggt tttgtacgtt caaacttttc
      301 tttagacatc gattgtccct ctaagacacg gataaatcgg tgatatcacc acatcaacca
      361 ggcaacatgc ccgacttgtt gaatgcaata aacagaagga aaaaacaggg aggagaaaag
      421 aagtggtgct gataggcaga ttcgaactgc cgacctcacc cttaccaagg gtgcgctcta
      481 ccaactgagc tatatcagca catcttggag cgggcagcgg gaatcgaacc cgcatcatca
      541 gcttggaagg ctgaggtaat agccattata cgatgcccgc atcctggaac tcggctacct
      601 gattttcatt ctgcactgaa tatcgagaga agctctcttt attcgagccg gtaagcgaac
      661 ttatcgtctc gggctacgcc atcgcgtggc cgaaattggt ggtgggggaa ggattcgaac
      721 cttcgaagtc tgtgacggca gatttacagt ctgctccctt tggccgctcg ggaaccccac
      781 cggacttgat ggtgccgact accggaatcg aactggtgac ctactgatta caagtcagtt
      841 gctctaccta ctgagctaag tcggcatcaa gtagcgcgca ttctatggag acatgcgagt
      901 tcatgcaact aaaaaattgc ataatttgtt ttattggtca cattttatgc aacacgatga
      961 agaaacagcc gaatggaggg cagattagca cactttttca acatcattgt gctcaacaat
     1021 gcgctcctgc taaaccataa ttcttcttat cagatggaat atctgtcaca ttgcttttca
     1081 acgatagctt cctgggagag attttttctt attattcctc cccatctggt gttaccctcc
     1141 tgcccattaa cccattcaac agaactgtga cgcgccatgg caaatatcgc tttgccgata
     1201 gagctatgac cgccagaaac atgcttatga gtataaaaga gcaaacgtta atgacgcctt
     1261 acctacagtt tgaccgcaac cagtgggcag ctcagcgtga ttccgtacct atgacgttat
     1321 cggaagatga gatcgcccgt ctcaaaggta ttaatgaaga tctctcgtta gaagaagttg
     1381 ccgagatcta tttacctctg tcacgtttgc tgaacttcta tataagctcg aatctgcgcc
     1441 gtcaggcagt tctggaacag tttcttggta ccaacgggca acgcattcct tacattatca
     1501 gtattgctgg tagtgtcgcg gtggggaaaa gtacaaccgc ccgtgtattg caggcgctat
     1561 taagccgttg gccggaacat cgtcgtgttg aactgatcac tacagatggc ttccttcacc
     1621 ctaatcaggt tctgaaagaa cgtggtctga tgaagaagaa aggcttcccg gaatcgtatg
     1681 atatgcatcg cctggtgaag tttgtttccg atctcaagtc cggcgtgcca aacgttacag
     1741 cccctgttta ctcgcatctt atttatgatg tgatcccgga tggagataaa actgttgttc
     1801 agcctgatat tttaattctt gaagggttaa atgtcttaca gagcggaatg gattatccac
     1861 acgatccaca tcatgtattt gtttctgatt ttgtcgattt ttcgatatat gttgatgcac
     1921 cggaagactt acttcagacg tggtatatca accgtttcct gaaattccgc gaaggggctt
     1981 ttaccgaccc ggattcctat tttcataact acgcgaaatt aactaaagaa gaagcgatta
     2041 agactgccat gacattgtgg aaagagatca actggctgaa cttaaagcaa aatattctac
     2101 ctactcgtga gcgcgccagt ttaatcctga cgaaaagtgc taatcatgcg gtagaagagg
     2161 tcagactacg caaataattt gcaggggagc gaatactccc ctttcttatt tttctgcact
     2221 acgcagggat atttcaccgc ccatccaggg ttttattatt ccatcctgct caagtaataa
     2281 agccccctgt ttgtctattc cgcgtgaaat gccaaatatt tctttatcac caatgataag
     2341 tttcactggg cgattaataa aattatccag cttttcccag cgcgacagat aaggtgccaa
     2401 tccttcttgt tcgaagagtt ccaacgcagc acgtaattca cgtattagca tggccgccaa
     2461 cgtattacga tcgagattga tccccgcttc ctgcagcgtg atccacccct gattaacgac
     2521 actctcttca acacggcgca ttgccatgtt gatcccggct ccaatgacta tttgcgccgc
     2581 atcgccagtt ttgccagtca gctccacaag aatgcctgcc agcttgcgat cctgcagata
     2641 gaggtcatta ggccatttga cacgaacttt atctgctccc agcttgcgta atacttccgc
     2701 catcacgata ccgataacca gacttaaacc aatcgccgcc gccgggcctt gttccagacg
     2761 ccagaacatc gacaaatata agtttgcgcc aaaaggcgaa aaccatttcc gcccccggcg
     2821 accacggcca gcctgctggt attctgcaac acaggcatcg cccgatttaa gctctccgat
     2881 acgatcaaga aggtactgat tcgtggagtc aataactggc agcacggcta cactaccgcc
     2941 atccagctga cccaatatct gttcagcatt aagtaactgg atgggctcag gcaggctgta
     3001 tcctttaccc ggaacggtaa agacatcaac gccccagtca cgcagtgtct gaatgtgttt
     3061 attaatagcc gcccggctca ttcccagcgt ttcacccaac tgctcgccag agtgaaattc
     3121 accgttcgct aacagggcaa tcaatttcag tggcacggtg ttatccttca tgaaattgtc
     3181 tccactgcgc tcacttcacc tgatgcacca ataaagcgga cttcaggctc aagccagaca
     3241 ttaaattttt cacccacttt ttgtcttaca tggtgtgcca gttgcaccac atcttcgctt
     3301 tttgcattgt cttcattaat gagaactaac gcctgttgac ggtgcaccgc agccccaccc
     3361 atttgcatcc cttttagctg gcactgatca ataagccaac ctgctgccag ttttactgaa
     3421 ccacccgcct gggggtaatt tggtgctgtt ggaaattgcg ccagtaatgc tttagccgtt
     3481 tcggcagata caacagggtt tttgaagaaa ctaccggcat tgccattcac ttttggatca
     3541 gggagtttgg tggtgcgcat atgacacacc gcattaaata cttgctgtgg cgttactgtt
     3601 gtaggatcca gacgagttaa gtcaccatac gttagtacag gttgccactc ttttagcaga
     3661 cgcagaccta cggctacaat ggcgaagcga tcctggtatt catgtttaaa aatactgtcg
     3721 cgatagccaa aacggcactc tttggcagtt aagcgcactt gcttacctgt cgccagttca
     3781 acacaatcaa cataagcgca aactcgctgt aattctacgc cataagcacc aatattctgg
     3841 ataggtgatg agccgacaca accaggaatt aatgccagat tttccagacc aggcatacct
     3901 tcctgcaaag tgtattttac caggcgatgc cagttttctc cggctcctac atgtaaatac
     3961 cacgcatcag gttcatcatg aatttcgata cctttgatcc ggttgatgat caccgtgccg
     4021 cgatagtctt ccagaaaaag tacattactt ccttcaccca gaataagaac gggttgtcct
     4081 tctgcggttg catactgcca ggcattgagt aattgttgtt cgtcttcggc acatacaatg
     4141 tgctgagcat tatgatcaat gccaaatgtg ttccagggtt ttaaggagtg gttcatagct
     4201 gctttcctga tgcaaaaacg aggctagttt accgtatctg tggggggatg gcttgtagtt
     4261 atgacgacag ggagagtttg tag
//
LOCUS       DAJVUN010000251         4203 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.254, whole genome shotgun sequence.
ACCESSION   DAJVUN010000251 DAJVUN010000000
VERSION     DAJVUN010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.254"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            112..615
                     /gene="yeaK"
                     /locus_tag="OQQ76_003838"
     CDS             112..615
                     /gene="yeaK"
                     /locus_tag="OQQ76_003838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mischarged aminoacyl-tRNA deacylase"
                     /protein_id="HCS1970149.1"
                     /translation="MTEMAKGSVTHQRLIALLSQEGANFRVVTHEAVGKCEAVSEIRG
                     TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL
                     TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTTDYLRIAQPEL
                     VNFRRTA"
     gene            complement(616..720)
                     /locus_tag="OQQ76_003839"
     CDS             complement(616..720)
                     /locus_tag="OQQ76_003839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416302.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970150.1"
                     /translation="MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG"
     gene            889..1335
                     /locus_tag="OQQ76_003840"
     CDS             889..1335
                     /locus_tag="OQQ76_003840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HCS1970151.1"
                     /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFP
                     WIEQQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG
                     VTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ"
     gene            complement(1292..2113)
                     /gene="nimR"
                     /locus_tag="OQQ76_003841"
                     /pseudo
     CDS             complement(1292..2113)
                     /gene="nimR"
                     /locus_tag="OQQ76_003841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416304.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NimR"
     gene            2210..3406
                     /gene="nimT"
                     /locus_tag="OQQ76_003842"
     CDS             2210..3406
                     /gene="nimT"
                     /locus_tag="OQQ76_003842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005117270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-nitroimidazole transporter"
                     /protein_id="HCS1970152.1"
                     /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY
                     SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY
                     LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVMPLA
                     LNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL
                     FLGSNSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQ
                     RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAA
                     ALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEI
                     RSYPVL"
     gene            3446..3793
                     /locus_tag="OQQ76_003843"
     CDS             3446..3793
                     /locus_tag="OQQ76_003843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HCS1970153.1"
                     /translation="MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEI
                     TPSTELRKAFHGEVVDFTTFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQ
                     NHALVLADWLRSL"
     gene            complement(3815..4069)
                     /gene="yoaF"
                     /locus_tag="OQQ76_003844"
     CDS             complement(3815..4069)
                     /gene="yoaF"
                     /locus_tag="OQQ76_003844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing lipoprotein YoaF"
                     /protein_id="HCS1970154.1"
                     /translation="MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQK
                     GGTLIPVSTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK"
BASE COUNT          967 a         1066 c         1040 g         1130 t
ORIGIN      
        1 catgatgcgt ataaagcttc cgatgagcgt ttatatgtca ataagcagaa caaaaacagc
       61 cgttcatgat aaccttctgt ggttgtttgc ttgtaatctc aggagcgtga aatgactgaa
      121 atggctaaag gaagcgtgac gcatcagcgg ttaatcgctt tattatcaca agaaggtgct
      181 aacttccgcg tcgttaccca tgaagcggta ggtaaatgtg aagcggtgtc agaaattcgt
      241 ggcaccgctt taggccaggg agctaaggca ctggtatgta aagtcaaagg caatggcgta
      301 aatcaacatg ttctggcgat cctcgctgcc gatcaacagg ccgatctgag ccaacttgcc
      361 agccatatag gcggattacg cgcttcgtta gccagccctg ctgaagtcga tgaactcaca
      421 ggctgtgtct tcggcgcgat cccccctttc agcttccatc caaaactcaa actggttgcc
      481 gaccctctac tcttcgaacg atttgatgaa atcgccttca atgcagggat gctggataaa
      541 tccgttattt tgaaaaccac ggattatttg cgcattgcgc aaccagaact ggtcaatttc
      601 cgccgcactg cgtaactagc ctgtccgttc aataagcaga acggacaaaa ccagcacaac
      661 agcaatggca aaaaacgatg acgtgataat cagtgtctcg acgaacattt gatcgttcat
      721 agcatgcccc cgggagatag ctgttttcac gttattgtta gcgtgcacaa atggcagttt
      781 gatgacagtt cgcctgattt ttatgcaaaa aacgtaaaga ttttctactt ccttcctgca
      841 gcaagcgtaa agtaagcagg cttattattt tttggcaagg aaaccacgat gtttgatgtc
      901 actttgctga tcctgctcgg gttagctgcg ctgggcttta tcagtcataa caccactgtc
      961 gccgtttcaa ttctggtgtt gatcattgtc cgcgtcacac cgttaagcac ctttttcccg
     1021 tggattgaac aacaggggct aagtatcggg ataatcattc tgacgattgg cgttatggcc
     1081 cccatcgcca gcgggacgct accgccctca accttgattc actcgtttct gaactggaaa
     1141 tcgctggtag caattgcagt cggcgtgatt gtctcctggc tgggtgggcg cggcgtgacc
     1201 ttaatgggca gccagccgca actggtcgcc gggctgctgg taggcactgt tttaggcgtg
     1261 gcgctgtttc gcggcgtacc ggtcggcccg cttattgccg cgggtctggt ttcgctgatt
     1321 gtggggaaac agtagttaat cccgcaatat atcggcctgg cgtttgcccc aggcctttct
     1381 taaacatagt aataaaggcc gttgttgaat cataccccag cgtatgagca actttctgta
     1441 cagtatcgcc tttcactaat ccctgaagtg ccataatcag ctgtaactgc tgacgtcact
     1501 ggcgaaaact caaccccgtc tcttttacta tcagtcgcgc aagattgcgt tcactcatcg
     1561 caaaaaagcc agcccattgc cctaatgacc cccactcgac gggccctttc gccatcatct
     1621 ccaccatcgt gcggatttta ggatgagaag aaacgggcag gtgcagctgt tgttgtggct
     1681 gctgagggag ttcatcaaac aggacctgta ttaatctgcg ggtcatcggc tcagcacgct
     1741 gagtcgtcgt cctgtttgcc agggttaaaa tcaattcccg gcataagggc gatattttca
     1801 atgtgcaaca tgttgtcggc attgtcactg cgctgggttc gataaacaga aaacagagtt
     1861 cagcgttagc tgtcacttga ttgctatgtt ccaccccgcc cggtatccaa accgcatatt
     1921 gcggcggcac catccacaaa gcattttcca ccgtacaggt aattgcacca tgtaatgcta
     1981 gtatcagctg tcctttgcgg tgctgatgta caggactggt taactcatcc gttccggcgt
     2041 gaatacaaaa tgcgaccgcg gcttcatggt gtcggtcggg ttcatagcca ttgagattca
     2101 acctgtgcat cattttgtcc gaatttagcg ataatttgtc attttagctt gattcaacat
     2161 aacaataaaa acggtaaggt acagcctcgt ttgtaacaat gagaagcata tgacctgttc
     2221 aacttcatta agcggcaaaa acaggattgt ccttatcgct ggcattctga tgattgccac
     2281 aacattacgc gtcaccttta ccggcgcagc accgttactg gatacgattc gttccgctta
     2341 ctcgctgacg acagcgcaaa ccggcttatt gaccaccctg ccattattgg cctttgcgct
     2401 aatctcacct ttggccgccc cggtagcgcg acgttttggt atggaacgta gcctgtttgc
     2461 cgcgttactt ttgatctgtg ctggtatcgc aattcgctct ctcccttcgc cttacttatt
     2521 atttggcggt acagcggtca ttggcggtgg gattgcatta ggcaatgtct tactgccagg
     2581 attaattaaa cgcgatttcc ctcattccgt cgccagactt accggcgcat attccctgac
     2641 aatgggagct gcggcggcac ttggatcggc tatggtaatg ccgctggctt tgaacggttt
     2701 tggctggcaa ggcgcgttgc tcatgctgat gtgttttcct ctgctggctc tttttttatg
     2761 gctgccacag tggcgaagcc aacaacatgc aaatttgagt acctcgcgcg ccttacatac
     2821 tcggggtatc tggcgttcgc cgcttgcctg gcaggtcaca ttgtttcttg ggagcaactc
     2881 actggtctat tacgtgatta ttggctggct tccggcgatc ctcatcagtc acggctatag
     2941 cgaagcacag gcgggttcac tgcatggttt gctgcaacta gccacagcag ctcccggttt
     3001 gctgatccct cttttcttac atcatgtgaa agaccagcgt ggtattgcag cgttcgttgc
     3061 cttgatgtgc gcagtgggcg ctgttgggct ctgctttatg ccagcgcacg cgatcacctg
     3121 gactctgctt ttcggttttg gttccggcgc aacaatgata ctggggttga cgttcattgg
     3181 tcttcgggca agttctgcgc atcaggcggc ggcactctcg gggatggcac aatccgtcgg
     3241 gtatttgctg gcagcctgtg ggccgccgct aatgggtaaa atacacgatg ctaacggtaa
     3301 ctggtccgta ccactgatgg gtgttgcaat actttcacta ctgatggcga ttttcggact
     3361 ttgcgccggg agagacaaag aaattcgctc atatccggtg ctatagtgac gtgacaaatc
     3421 atgcgtgaaa gggagaacaa acacgatgaa tattcagtgc aaacgcgttt atgatccggc
     3481 tgaacagagc gatggttatc gcgtactggt cgaccgcctc tggccgcgcg gtatcaaaaa
     3541 aaccgattta gcccttgatg agtgggataa agaaatcacg ccgtcaacgg aactgcgcaa
     3601 agcctttcac ggcgaagtcg tcgattttac aacctttcgc gagcaatatc ttgcagaact
     3661 ggcgcaacac gagcaagaag gaaagcggct ggcggacatc gccaaaaaac agccgctgac
     3721 cctgctctac gcagcaaaaa acaccacgca gaaccatgcg ctggtgctgg ccgactggct
     3781 acgtagcttg tgattttagt acagcatccg gcggttattt ttcaccagcc ggatggtccc
     3841 gtcgccacaa tgcccattca tcaatcgttt caccgcccgg taatttgcaa ttgttgctga
     3901 ccccttgcgc tgtcgacact ggaatgagcg tcccgccctt ctgctggcaa tagaccgacg
     3961 ccggatttgc cataccaatc tgcggcggtt taggtgcttc tggctgagaa ggggttgaac
     4021 aaccagccag gaccagcaag caaggcagaa caaaactgat aattttcatt tattgatctc
     4081 acatatttat ccagacttag agtatcgcgg tatcgttttg ttttgcagca ctatttttat
     4141 tacattcact caaaacatat tacgtcttgt ttcatctttg ttgatgatgt tttatcatgc
     4201 ctg
//
LOCUS       DAJVUN010000252         4191 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.255, whole genome shotgun sequence.
ACCESSION   DAJVUN010000252 DAJVUN010000000
VERSION     DAJVUN010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.255"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(575..1615)
                     /locus_tag="OQQ76_003845"
                     /pseudo
     CDS             complement(575..1615)
                     /locus_tag="OQQ76_003845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
     gene            1578..1820
                     /locus_tag="OQQ76_003846"
                     /pseudo
     CDS             1578..1820
                     /locus_tag="OQQ76_003846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
     gene            complement(2014..2949)
                     /locus_tag="OQQ76_003847"
     CDS             complement(2014..2949)
                     /locus_tag="OQQ76_003847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009440807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HCS1970155.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQ
                     PHAQFWLVFDVDRVGAAIDWSDRNAPAPNITVKNPENGHAHLLYALNLAVRTAPDASV
                     KALKYAAAIERALCEKLDADVNYSGLICKNPFHLEWQVMEWREEAYALDELADYLDLR
                     ASERRSVDKHYGLGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPV
                     PLSPPECRAIGKSIAKYTHRNFTPESFAQYVADTHTPEIQAKRGRKGGIAKGEAYDDK
                     RFMALCMLENGYSQKAIAAMLNVHRNTIRNWAMHK"
     gene            3461..>4191
                     /locus_tag="OQQ76_003848"
     CDS             3461..>4191
                     /locus_tag="OQQ76_003848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970156.1"
                     /translation="MGKMNINFKHILPLLSSFFISGCDSDGISKVKSFVYYDIDDSMT
                     VGKAFDTRSDCINGTWSEKEDNRGRTIVTYTCDISESGLKIINSAIMQEPEDKAEYSI
                     TQNNNSIKSTNESLEEYKQKTPLVEKTKEVIIDHIRKLNSAFNEDPMIYSKLTISPYL
                     DRMLYLKDHNDNALNEICGGYEYIQSADSYSWRDVSEEYAKESCEKHIYKVYQSFKKN
                     ASPLITKNFPGFYERVPPCENADEC"
BASE COUNT         1179 a         1015 c          904 g         1093 t
ORIGIN      
        1 aaaaaaaaca aatatatact ttgatgataa ctttctaaat atctacaaaa gaagccaaga
       61 tagagcacct caaataattt ctaatttaaa aaaacacaat atagaaatag gtgaaaagtt
      121 aaatgattgt ataaaaaaac taaatatctc agatgtcaaa ttaacctatt actggtttgt
      181 aacagacacc ggaggtgttg attatttaga tggggtgttg acatataatt ttcagggaaa
      241 gaatagggct gaaaactttc ataaacaact attgcaatat gcatacatta actacagcaa
      301 aaatcaaata cctcgggact ttgtaacatc aataaaaaat agtatttatt ataaaataga
      361 agattgcact aagttttagt ccttccctta caggtggtta cacatataac cacctgcaaa
      421 tatttaacac ctgttaactt cattaatctg aactgtgagt aaatcaaaac gacaattttt
      481 ctcattcaga aaacggtgaa cgggacgcgg aattttttcg cgttccgtga aacgttggcg
      541 gggttcgggg cgcagtcccg atattgctac attttcaacg ctccatatct tgatcacgtt
      601 cgttactacg tgatgccccc ctggaccagg atcgctgtat acgcagtgct ttttcctcct
      661 gttgctgccg ttcctgcgcc atttctgcca gtaactcatg tcgcatttga gctttttcat
      721 ctccagatat actgagttca ggctccagag ataacatctg gctacgggca acggatacct
      781 cttcagcaac cttttgccta gtgttctcta aagatgccgc cgccagaatc tcgcgttctc
      841 tgtacctgtc cagctcccca acgtacttat atccctcggt acgcttaaaa gcagcgtttt
      901 ctttgtccca ctcggattcg gcttgctgta gcttgttcct gaattcattc ctttcatgtt
      961 cagcggtttc cagcacactt ttttgctcca gaatacgcgc atcaatctcc cttttgtcag
     1021 ccccccgaaa caggccacga atcccattca aagcattgcg ttgttcctgt agctcccgca
     1081 gctccctttg tgcggaaaca atattacgcc ccagtttgtc taaataccgt gctccttcat
     1141 atattcgtct actccattcg gaaagagagt cttttttagc tttcgcattc tgaagcagct
     1201 tatgttcttt gagcgcattg ggattggcat cccctaaacg agcaagcctt acctctccct
     1261 gaatgaccgt tttcataacc ttgcggtact gaagcaataa ctccggtgaa cgggctgaac
     1321 gaacaggctc aactgccttg attttttgct tttgctcctg ttcctgctga atggcatttg
     1381 cgccatctct ggcggtcttg agttcccgct cggcattcct ccgttcctgg attgcaacaa
     1441 tctgctcccc attcagactg gcggcctgaa cggggccaag atgaacttcc ggcgtgcgat
     1501 tgataccctg ttctttcaga gaacgatgat ctacgcgcga ctcgtgaccg tgtcgcgcaa
     1561 ggtgctcatt ctgcacatct gcccagcggg aacgcagcgc aacaagggcg gaacgaaagg
     1621 cgcgggatca tgaactctac aaggccgcag gcctcatgat tgtggcagga ctggtggaca
     1681 gcaaaaccgg aaagccaaag tttagtgctg ccgaactggt aggcgcactc gcaggaatcg
     1741 cagagctacc gcacaaccat ccaaaatggc aggaatggga aaaacgcggg aaagagctac
     1801 tcaccaaaaa cagtgcgtaa gagcctccgt tcacgttccg gttccctggt gcttcctcgc
     1861 tcattcgctc gctacgctcg gtcatgagac tgcggcgagc acgaccacct caatcatacg
     1921 gtaagccgca ccattgctgg gctgaaagga gaaaaccgcc ggaaagcccg ctgctcaaaa
     1981 agacgccgaa aaggcgctgt tatctgatat aggctatttg tgcattgccc aattacggat
     2041 cgtattacga tgtacattca gcatcgccgc aatagctttc tgagaatatc cattctccag
     2101 catacatagc gccatgaaac gcttgtcatc gtaggcttcg cctttagcga tgccaccttt
     2161 ccggcctctc ttggcctgta tttctggtgt gtgcgtatca gccacatact gtgcgaaact
     2221 ttccggcgtg aagttcctgt gcgtgtattt cgcaatgctc ttgccaatag cccgacattc
     2281 aggcggagaa agcggaacgg gaagcgatgc gttgtacatt tcgacacgct gaatcacagc
     2341 atcaagccac tgtgagaatg ctggccagcc ctgacgaatc gccctgtaag cccatttgcg
     2401 cgtcatttcg aacagatggc agtttcgccc cagcccgtaa tgtttatcga cgctacgacg
     2461 ctctgaggct ctcaaatcga gataatcagc cagttcatcg agggcgtagg cttcctcgcg
     2521 ccactccatc acctgccatt ccaggtggaa cggatttttg caaatcagtc cgctgtagtt
     2581 cacatctgcg tcaagtttct cacacagcgc acgttcaatt gcagcggcgt atttcagcgc
     2641 cttaaccgac gcatcaggcg cggttctcac ggcaagattg agcgcgtaga gcaggtgagc
     2701 gtgcccgttc tcgggatttt ttacggtgat gttcggcgcg ggggcgttcc ggtcgctcca
     2761 gtcaatcgca gctcctactc ggtcaacgtc aaaaaccagc cagaactgcg catgaggctg
     2821 attttgctgg atgtagcgag caagcagcgc acgccctttg ccggagatac gaagaccgaa
     2881 agcgagatca tccgtgtgat agggacggtg gggtaaattt tcttcgaagt attgaagcgc
     2941 ggcgctcatg tgttacgatt ccttctaggt tatcgaccga catcgcccct gtattttcgt
     3001 gaaagtcttg gcggatagac acgaatttca ggggcgtttg tttttcagtc gcttacacta
     3061 cccccaacga caaaacctgt cgagccttcc cgcaaaatcg atccatttac cataactccc
     3121 gttgtgcgcc ccccttaaaa cgccctcagt cgctttctgg cgcaaaaaac gtaaaaagac
     3181 agggaaacaa caggccagac caaaaaaacg cgccagaatt gttttcaggg ggctgcataa
     3241 ctatgcacga aagcgattca tgtccggttt cactcgtttt gaacagcgaa caggtcaaaa
     3301 cagcaaactt tctcatccag aaaaaggtga actggtgcga aatcttttcg aactgcgtaa
     3361 gacgttgagc acaaacatag taagtcggtt tatcggtatg tatggattcc attaacatat
     3421 cgcctgtatt aatatttcct cgttattgtt agaaataaaa atgggaaaaa tgaatattaa
     3481 ctttaaacat atccttcctt tattgtcgtc attttttatt tcaggatgcg actctgatgg
     3541 aataagcaaa gtaaagtctt tcgtatatta cgacattgac gactcaatga ctgttggtaa
     3601 agccttcgat acaaggagtg attgcatcaa tggcacatgg agtgaaaaag aggataatcg
     3661 aggcagaacc atcgtcacat atacctgtga tattagtgaa agtggcctaa aaataataaa
     3721 ttcagccatt atgcaagaac ctgaagataa ggctgaatat tctataacac aaaataacaa
     3781 cagcataaaa tcaaccaatg aatcactaga ggaatacaaa cagaaaacgc ctctagtgga
     3841 aaaaacaaaa gaggtcataa tagatcatat aagaaagcta aacagtgctt ttaatgaaga
     3901 tccaatgata tatagcaaac tcacaattag cccttattta gacagaatgc tatatctaaa
     3961 ggaccataat gacaatgcgc taaatgaaat ttgtggtggg tacgaataca ttcaatctgc
     4021 cgatagttac agttggcgtg atgtaagtga agagtatgca aaagaatcat gcgaaaagca
     4081 tatatataaa gtatatcaat cgtttaagaa aaatgcatca ccattaataa ctaaaaactt
     4141 ccccggtttc tacgaacgtg tccccccctg tgagaacgca gatgaatgca t
//
LOCUS       DAJVUN010000253         4109 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.256, whole genome shotgun sequence.
ACCESSION   DAJVUN010000253 DAJVUN010000000
VERSION     DAJVUN010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4109
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.256"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(953..1144)
                     /locus_tag="OQQ76_003849"
     CDS             complement(953..1144)
                     /locus_tag="OQQ76_003849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1970157.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLYDH
                     ADELYRSCLARFGDDGENL"
     gene            1209..1532
                     /locus_tag="OQQ76_003850"
     CDS             1209..1532
                     /locus_tag="OQQ76_003850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HCS1970158.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGRLPT
                     LAPPLLRQLAAIGNNLNQAARKVNSGQWSSGNRVQVVAALMAIGDELRRLRLAVREQG
                     TRDDS"
     gene            1474..2232
                     /locus_tag="OQQ76_003851"
                     /pseudo
     CDS             1474..2232
                     /locus_tag="OQQ76_003851"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2210..2740
                     /locus_tag="OQQ76_003852"
     CDS             2210..2740
                     /locus_tag="OQQ76_003852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="HCS1970159.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLGESVSEAVTSN
                     ETKIKGAIAQFTASTEESLKKHREGVKEAMMQHRKDMLKLAGSSGMRLLGIVFLLFTA
                     SGGTLWYLGGRIQTNLEEIRVQEETLRKLNAKTWGVRYHEGSNGRFLVLPEGMKAETN
                     WTMENGKQNAVRLLQE"
     gene            2747..2980
                     /locus_tag="OQQ76_003853"
     CDS             2747..2980
                     /locus_tag="OQQ76_003853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HCS1970160.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDN
                     AMLNERVMQLSQQVQHLSEQTERLSQLYSENRR"
     gene            complement(3526..3993)
                     /locus_tag="OQQ76_003854"
     CDS             complement(3526..3993)
                     /locus_tag="OQQ76_003854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970161.1"
                     /translation="MRIDISHQTRHTPPNMLPREQNCVAMALSACFRQQLNPVVNSLL
                     KERIIHSPKELEHDNAVIRALQKLQIQEVCNSTLWETAKQQLLQKSDGRYFAINSKHL
                     AFPGPGESHAFCCIKYKNAIGINGNNAETQSTHYQPYPYDKVSIWGPFPHNLT"
BASE COUNT          969 a          941 c         1230 g          969 t
ORIGIN      
        1 aaaaaaacca ccgctaccaa cggtggtttg tttgccggaa tctagagcta ccaactcttt
       61 cttccgaagg taactggctt ggtggagcgc agataccaaa tactgtcctt ctagtgtagc
      121 cgcagttagg ccaccacttc aagaactctt aatatctcaa tccaccttgt ccagttacca
      181 atggctgctg ccagtggcgt taagtcgtgt cttaccgggt tggactcaag acgatagtta
      241 ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag
      301 cgaacgacct acaccgaact gagataccta cagcgtgagc tatgagaaag cgccacgctt
      361 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc
      421 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac
      481 ctctgacttg agcgtcggtt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac
      541 gccagcggcg tggccttttt ccggttcctg gtcttttgct cacatgttct ttccggcgtt
      601 atcccctgat tctgtggata acagcatttc gtttttgagt gagtagatac cgctcgccgc
      661 agtcgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaaaagcg cctggacgtg
      721 cattttctcc ttacgcatct gtgcggcatt tcacacccgg tatggcgcac ttttcataca
      781 atccgcactg atgccgcatg gttaagcctg tatacactcc gctatcgcga cgtgactggg
      841 tcatggctgc gccccgacac ccgctaacac ccgctgacgc gccctgacgg gcttgtctgc
      901 tcccggcatc cgctcacaga taagctttga ccgtctccgg gagctgcatg cgtcagaggt
      961 tttcaccgtc atccccgaag cgagcgaggc aactgcggta aagctcatcg gcgtggtcgt
     1021 aaagcgattc acagatgtct gcctgttcat ccgcgtccag ttcgttgagc ttctccagca
     1081 gcgttaatgt ctggcttctg ataaagcggg ccatgttaag ggcggttttt tcctgtttgg
     1141 tcactgatgc ctccgtgtaa gggggatttc tgttcatggg ggtaatgata ccgatgaaac
     1201 gcgagaggat gctcacgata cgggttactg atgatgaaca tgcccggtta ctggaacgct
     1261 gtgagggtaa acagctggcg gtatggatgc ggcgggtctg cctgggtgag ccggttgccc
     1321 gttccgggag gctgccgaca ctggcaccgc cgttactgcg tcagctggcc gccatcggga
     1381 ataacctgaa tcaggcagcg aggaaggtga acagcgggca gtggtcttcc ggtaaccggg
     1441 ttcaggtggt ggccgcactg atggccatcg gggatgagct gcgccggctg cgtctggccg
     1501 tcagggaaca ggggacgcgg gatgatagtt aagtttcatg cccggggaaa aggcggtggc
     1561 agtggtccgg ttgattacct gctgggaagg gagcgtaacc gggaaggggc aacggtgctt
     1621 cagggtaatc cggaagaagt ccgggaactc atcgatgcca cgccatttgc gaagaaatac
     1681 acgtccggtg ttctctcgtt cgcggagaag gcgctgccag cgggaggacg tgaaaaagtg
     1741 atggcgagtt ttgagcgtgt actgatgccc ggtctcgaaa aaaatcagta cagcatcctg
     1801 tgggtggagc accaggacaa gggacggctt gagctgaatt ttgttattcc gaacatggag
     1861 ctacagaccg gaaaacgcct tcagccgtac tacgaccggg cagacaggcc gagaattgat
     1921 gcctggcaga cgctggtgaa tcaccattac gggctgcatg acccgaacgc cccggagaat
     1981 cgccggacgc tgacactccc tgataacctg ccggaaacga aacaggtact tgctgagggc
     2041 gttactcgtg ggatagacgc actttaccat gccggagaga taaaaggccg tcaggatgtg
     2101 attcaggcgc tcacagaggc ggggcttgaa gtggtcaggg tgacgcgaag cagtatcagc
     2161 attgcagacc cgaacggcgg gaggaacatc agactgaaag gagcgtttta tgagcaatct
     2221 tttacagacg ggcgcggagt tcgagaaaaa gctgaaagag agagccgaat ctacagagaa
     2281 aatgctgaac gacgaattca ggaagctcgg cgaatctgta agcgaggctg tgacctcaaa
     2341 cgagacgaaa atcaaaggcg ctatagccca gtttacggcc tcgacggagg aatcgctgaa
     2401 aaaacaccgg gaaggggtga aagaggcgat gatgcagcac cggaaggaca tgttaaagct
     2461 ggcagggagt tcgggtatga ggttgctggg gatagtcttt ctcctgttta ccgcgagtgg
     2521 tgggacgctc tggtatctcg gcgggaggat acagacgaac ctggaagaaa tcagggtaca
     2581 ggaagagaca ttgcggaaac tgaacgcgaa gacatggggc gtgcgttatc acgaggggag
     2641 caacggacgt tttctggttt tgcccgaggg gatgaaagcc gaaacgaact ggacgatgga
     2701 aaacgggaaa cagaatgccg taaggctgct acaggagtaa cagagcatga cggagctgga
     2761 aagacatttg ctgaacgcat tagagcaact gcaacaggac tatatgcagc ggctgaacga
     2821 atgggagagc gccttcgtgg aattgcagaa aatgttttcg cttacgcaac gggacaacgc
     2881 gatgctgaat gagcgggtca tgcagttgag tcagcaggtg cagcacttga gcgagcagac
     2941 agaacgcttg agccagttat acagcgagaa caggagataa gggacgaacg gctgatacag
     3001 gaacgcgaac atgcgttatc cctggagcgt gagcgccagc tggaaataca ggaacggaca
     3061 ctggatggcc cttcgctggg atggtaatca gagacaggct aaaatgttgt cagcgcgttt
     3121 ccggtgcatt ttttgggata atggttggtt cgggggcacc gggaacgcgc ttcagtcaga
     3181 ccttgctgaa aacacaggaa cgcgttaaaa cgcatacggg cgcgattctg gtgtgtcttt
     3241 tgttgctgtg ttttgcctct attgccagat cgcgctcatt cccctgaact tctgttttcc
     3301 cgctcagatc cccgtcttct tcgcttccga aagcatgaaa aaaatccgtt tcagctgtct
     3361 ctggctggca attcctgcgt gattcacatg gctgcatagc tatgcatgtg gttaaaattt
     3421 accgggtgcg atcgcggcag tttttcgggt ggtttgttgc catttttacc tgtctgctgc
     3481 cgtgatcgcg ccgaacgcgt ttcagcggtg cgtacaatta agatattacg ttaaattgtg
     3541 agggaatggt ccccatatac tgactttatc atagggatag ggttggtagt gggtcgattg
     3601 ggtttcggca ttgtttccgt taatgccaat tgcatttttg tatttgatgc aacagaaggc
     3661 gtgagattct cctgggcctg gaaaggctaa gtgtttagaa ttgatggcaa aatatcttcc
     3721 gtccgatttt tgaagtagtt gttgtttggc tgtctcccaa agggtgctgt tacaaacttc
     3781 ttgaatttgt agtttttgca gggctcttat tactgcgttg tcatgttcca attctttagg
     3841 ggagtgtatt attctctctt ttaataagct gtttaccaca gggtttagtt gttgtctaaa
     3901 gcacgcagat aatgccattg ctacacaatt ttgttcccga ggaagcatgt ttggtggggt
     3961 atgccgtgtt tgatgtgata tgtctattct catagaaggt ctctggctta tagcatcaac
     4021 aaatacggct ataaaacaaa attttcatag agtgattcaa gatcttcttg agatcctttt
     4081 ttgcggcgcg taatctgctg cctgcaaac
//
LOCUS       DAJVUN010000254         4107 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.257, whole genome shotgun sequence.
ACCESSION   DAJVUN010000254 DAJVUN010000000
VERSION     DAJVUN010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4107
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.257"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(70..906)
                     /gene="kduI"
                     /locus_tag="OQQ76_003855"
     CDS             complement(70..906)
                     /gene="kduI"
                     /locus_tag="OQQ76_003855"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HCS1970162.1"
                     /translation="MDVRQSIHSAHAKTLDTQGLHNEFLVEKVFVADEYTMVYSHIDR
                     IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD
                     ALYVGKGAKEVVFASIDTATPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNR
                     RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFH
                     MMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD
                     LR"
     gene            complement(1193..2374)
                     /locus_tag="OQQ76_003856"
     CDS             complement(1193..2374)
                     /locus_tag="OQQ76_003856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708633.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HCS1970163.1"
                     /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP
                     AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI
                     QCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVT
                     AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMIQSNGQTLVVDTDEQ
                     PCTDASAEGLARLNPSFDSLGSVTAGNASSINDGAAAVMMMSEAKARALNLPVLARIR
                     AFASVGVDPALMGIAPVYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDE
                     RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD
                     E"
     gene            2629..3858
                     /locus_tag="OQQ76_003857"
     CDS             2629..3858
                     /locus_tag="OQQ76_003857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HCS1970164.1"
                     /translation="MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITA
                     LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVL
                     IYAVAITNSLTEQLAKHMVIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPL
                     IAYFLFLSIYLVGSWQPDLLTTQVEFNQNPLHQIWISIPVMVFAFSHTPIISTFAIDR
                     REKYGEHAMDKCKKIMKVAYLIICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALS
                     MLPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRA
                     LSIMLVSLITFIVCCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPWRSIGN
                     LITLIVGILCVSVMFFS"
BASE COUNT         1089 a         1009 c          882 g         1127 t
ORIGIN      
        1 ccgcaacttt accttcgaga gaaaatgcac ttaaaatcat aacaatacct tattcgttta
       61 tgcccacaac tagcgcaaat ctttaacggc cacatggtcc atatcatcaa agacctggtt
      121 ttcaccaacc atgccccaga taaaggtata agctttggtt ccgacgccgg aatgaatcga
      181 ccagctcggg gagatcaccg cctgctcgtt atgcatcaca atgtgacgcg tttcttgcgg
      241 ttgccccatc atgtggaaaa cgcaggcgtc atcatccata ttgaaataga aataaacttc
      301 catccggcgc tcgtgggtgt gacacggcat ggtgttccac aagttacctg gagccagctc
      361 cgtcagcccc atactcaatt ggcaggtttc cagcacatcc gggacaaaat atttgttaat
      421 agtgcgacgg ttactggtga ggttatcgcc taacgtgact ggagatactt cgtccggggt
      481 gacttttttg gtgggatacg tcgtatgcgc gggggcgcaa ttgtaataaa actttgccgg
      541 agtggcggta tcaatactgg caaagacaac ttcttttgca cctttaccaa catacagggc
      601 gtcgcggtga ccgatttcat agcattggcc atcgacagta atcgtaccgg caccgccaat
      661 attgataaca cctaactcgc gacgttcaag gaaatagctt acgccgagtt gtttaccaac
      721 ttccccgcca acggaaaccg ttttagttat cggcataatg ccgccaacaa taattcggtc
      781 aatgtggctg taaaccatgg tgtactcatc ggcgacaaat accttttcaa ccaaaaattc
      841 attgtgcagc ccttgggtat ccagcgtttt tgcgtgcgca ctgtggatgc tctgtcttac
      901 gtccacatca acctccgata atcagtgaag cgtgaaaata gaaaacgata gtgaaacact
      961 gtttcgtttt ctctataaag ggatgatatg cccatgggcc agggttttca attaaaaata
     1021 aaataatgtt ttatttttaa gttaaggatt aaaaaaagtg cagtgtcgat cacgaatatg
     1081 tcatgagaat ggaaaaatga gggagcccag aaaatgtatg tcgacttgcc agccatcatt
     1141 attcaacaga ttaatgacgg cagatattta tcggtaagga ggaaatgcag agctactcgt
     1201 cacgttcaat ggtcaatgcc acgccctggc ccccgccgat acaaagcgtt gccagccctt
     1261 tgcgggcatt acgtttcacc atttcatgaa ccagagaaac caggattcgg caaccggaag
     1321 cgcctatcgg gtgaccgagt gcgatcgcgc caccattgac attgacccga cgctcatccc
     1381 actcaagcat cttgccaacc gaaagcgcct gtgcagcaaa cgcttcatta gcctcgataa
     1441 gatcgacatc agccaactgc cagcctacac gctccaggca acggcgggtc gcatacaccg
     1501 gcgcaattcc catcaatgcc ggatctacac caacgctggc aaatgcgcgg atgcgggcca
     1561 gcacgggtaa attcaacgct cgtgctttgg cttcgctcat catcattacc gcagctgcgc
     1621 catcgtttat ggatgatgca ttccccgcgg tcacagaacc gagactatca aatgaaggat
     1681 ttaaacgggc taaaccttct gcactggcgt cagtgcatgg ctgttcatcg gtatcaacaa
     1741 ccaacgtctg accgttactt tggatcatta ccgggacgat ctcatcttta aatcgtccgg
     1801 cgtcaatcgc cgctcgcgct ttttgttgcg agctaagtgc gtaagcatcc tgcaactgac
     1861 ggctgatgcc atattcgcga gccagatttt cggcggtgac accaatatga taatcattga
     1921 aggcatccca caacccatca tgcaccagac tgtcaaccaa ctggctattg ccaagctgtg
     1981 caccggtgcg gctatcagtc agaacatgtg gtgcgcggct catgttttcc tggccaccgg
     2041 cgatgacaat atcagcctcg ccacactgta tcgcctgagt agccagatgc agtgctttaa
     2101 gcccagaacc gcaaacgtca ttaatagtga ttgcagaaac gctattagga agaccacctt
     2161 taatagccga ttgccttgcc ggattctgcc ctgcccctgc agtcaacacc tgaccaagaa
     2221 ttacttcatc caccgcatat gcaggaacgc cggtacgttc tattaacgct ttcacgacca
     2281 aactaccaag ttccacggcg gaatgacccg ctaacgcacc acgaaagcag ccgataggtg
     2341 tccgtaacgc cccgacaatc acaacgtctt tcatcacaac ctcgcaccaa ttaacagtgc
     2401 aatagtaaat gattgttaat tacagttatc ttaattgttt aaaaaaagtg atttttatca
     2461 caaaggaaat atgcctgagc agcagtcaga gacataactg gcacgtaagg tttgcaacca
     2521 ctaacccacc aatagagggg tagatagggc gttaatctcc catacttaac ctggtttatg
     2581 gtaaattgcc ctccattttg tttaatttgt agatgatatg ttcagataat gtctaatatt
     2641 tggtctaaag aagaaactct gtggagtttc gcgctctacg gcacagccgt tggtgcaggc
     2701 acgctcttcc ttcctattca gttaggttcg gcaggggctg tggtcctgtt tattactgct
     2761 ctggtcgcct ggcctttaac atattggcca cataaagctt tatgccagtt catcctctca
     2821 tcgaaaacat cagcaggtga agggataacg ggcgcggtaa cacactacta tggcaagaag
     2881 attggtaatc tgattaccac gctgtacttc atcgcctttt ttgtcgtcgt gttgatatat
     2941 gcagtggcaa ttaccaactc acttacagaa cagctggcaa agcatatggt tattgatctt
     3001 cgcatccgta tgttggtgag tctgggtgtt gtattaatcc tgaatctcat ttttctgatg
     3061 ggacgccatg caaccattcg ggtaatgggt tttttggtat tcccattgat tgcctatttc
     3121 ttatttcttt ccatttacct tgtcggtagt tggcaacctg atctattaac gacccaggta
     3181 gagttcaatc agaatcccct tcaccagata tggatatcga ttcccgtgat ggttttcgcc
     3241 tttagccata cgcccattat ttctacgttt gccatagaca gacgtgaaaa atatggcgaa
     3301 cacgctatgg ataaatgcaa aaaaattatg aaagtcgctt atctcatcat ctgcataagt
     3361 gtactgttct ttgtctttag ctgcctgctt tctattccac cttcgtatat tgaagcggct
     3421 aaagaagaag gggtcaccat tttatcggcg ctttctatgc tgccgaacgc cccagcatgg
     3481 ttgtcaattt ccgggattat tgtcgcagta gttgcgatgt cgaaatcatt cctgggtacg
     3541 tactttggcg ttattgaagg tgccacggag gtcgtcaaaa caacactaca gcaggttggt
     3601 gtaaagaaaa gtcgtgcatt taaccgcgca ctatcaatta tgttggtatc gctgattacc
     3661 ttcattgttt gttgcattaa cccgaacgcg atttcgatga tttatgcgat cagcggcccg
     3721 ctcattgcca tgatactttt catcatgcct acgttgtcaa cgtatctgat cccggcgctt
     3781 aaaccctggc gctccatcgg aaatctgatt acgctgatcg tgggtatcct gtgcgtatcg
     3841 gtaatgttct ttagctaata tccgttgtgg atggttcaaa attgctacaa ttttgaacca
     3901 ttccattttt cataatattc atttgttatt attccgccct atcacttctc tcgttatatc
     3961 ctagaattat cagttagtta aacacacaaa gagatctgaa catcttaaat aagactattt
     4021 aagatgcata acttagattc gcaagatatc ttctggtcat tcaaaaacaa tttgcgatat
     4081 agatattctc ataccatgag atagtta
//
LOCUS       DAJVUN010000255         4079 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.258, whole genome shotgun sequence.
ACCESSION   DAJVUN010000255 DAJVUN010000000
VERSION     DAJVUN010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4079
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.258"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            41..940
                     /gene="pgrR"
                     /locus_tag="OQQ76_003858"
     CDS             41..940
                     /gene="pgrR"
                     /locus_tag="OQQ76_003858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator PgrR"
                     /protein_id="HCS1970165.1"
                     /translation="MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEE
                     RLGLRLLTRTTRSVVPTEAGEHFLSVLGPMLHDIDSALASLSELQNRPSGTIRITTVE
                     HAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRI
                     GPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVR
                     MEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYY
                     PHRRHAGSAFSLFIDRLKYKGAV"
     gene            1277..2890
                     /gene="mppA"
                     /locus_tag="OQQ76_003859"
     CDS             1277..2890
                     /gene="mppA"
                     /locus_tag="OQQ76_003859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415845.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide ABC transporter
                     substrate-binding protein MppA"
                     /protein_id="HCS1970166.1"
                     /translation="MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDE
                     PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNA
                     KWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTA
                     VDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERV
                     VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL
                     LKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPA
                     WHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQ
                     KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLL
                     TSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNG
                     RLIKPWLKGYPINNPEDVAYSRIMYIVKH"
     gene            complement(2941..3972)
                     /gene="ynaI"
                     /locus_tag="OQQ76_003860"
     CDS             complement(2941..3972)
                     /gene="ynaI"
                     /locus_tag="OQQ76_003860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low conductance mechanosensitive channel YnaI"
                     /protein_id="HCS1970167.1"
                     /translation="MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHA
                     VQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFE
                     KQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAG
                     KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPN
                     SLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLV
                     YFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD
                     NITPPEQGR"
BASE COUNT         1141 a          894 c          961 g         1083 t
ORIGIN      
        1 ctatcattta aatgattaat agattgcatg gagatactga atgaagcgtg aagaaatcgc
       61 tgatctgatg gcgtttgtcg tcgttgcaga ggagcgtagc ttcactcgtg cagcagcccg
      121 cctgagcatg gcgcagtcag ctttaagcca gatagtgcgt cgtatagaag aacgattggg
      181 attgcggctt ctgacgcgaa ccacgcgcag cgttgttcca actgaagcgg gcgagcattt
      241 tttgtctgtt cttggcccta tgttgcatga catagattca gccctggcat ccctgagcga
      301 gctgcagaac cgcccatccg ggacaatacg tattactact gtagaacatg cagcaaaaac
      361 gatattgtta ccagcaatgc gcacattcct gaaatcgcat cctgaaattg atattcagct
      421 caccattgat tatggtttga ccgatgtcgt ttctgaacgt tttgatgcag gcgtccgtct
      481 gggtggggag atggataaag atatgatcgc cattcgaatc gggccagata taccaatggc
      541 tattgttggc tcaccggatt atttttctcg ccgaagtgtt ccaacgtcag tgtcacaatt
      601 aatagatcat caggcaatta atttgtatct tcccacatcg ggtacagcaa atcgctggag
      661 attaatacgc ggtggacgtg aagttcgtgt tcgcatggaa ggtcagcttt tactgaatac
      721 gatagacctg atcattgatg ctgcaattga tgggcatgga ttggcgtatc taccttatga
      781 tcaggttgag cgggctatta aagaaaaaaa actgatacgt gttttggata aattcacacc
      841 agatttaccc ggttatcacc tgtactatcc acaccgtcga catgctggct cggcattctc
      901 attatttata gataggctga agtataaagg tgctgtttag cactacttgc tgatacatta
      961 atttaatttc tctcttaacg tattctcagt tcctttcaac gttttggtta ttttttattc
     1021 ttcgtacaat ggcgacagat gctgattttg ataccgaaaa ctggtttgaa cgtgcgaagc
     1081 ctgaacgtag tgttcggtgt tctatgtgct ttgccgcatt ttggcgtcga ttgtttacac
     1141 taaatctgat ttaatatatt gatacataaa atattttatg cttcctgtgt cacttttttg
     1201 atggaagttg tttgcatttc tttaaggcga aacaaataat tacgcatcaa ttttaatgtc
     1261 ggttagaggg aaacttatga agcactctgt ttcagtcacg tgttgtgcgc tgttggtcag
     1321 cagcatttct ctttcgtatg ctgcagaagt tccgagcggc acagtactgg cagagaagca
     1381 ggagctggtg cgccacatta aagatgagcc tgcgtcgctg gatcccgcta aagccgtggg
     1441 cctgccagag attcaggtca ttcgcgatct gtttgaagga ctggtgaatc agaacgagaa
     1501 aggggagatt gtccccggcg ttgcgactca gtggaaaagt aatgacaacc gtatctggac
     1561 ttttaccctg cgcgataacg caaaatgggc ggatggcaca ccggtaacgg cgcaagattt
     1621 tgtctacagc tggcagcgtc tggtggaccc gaaaacgcta tcgccatttg catggtttgc
     1681 cgcgctggcg ggaatcaaca acgcacaggc gattattgat ggtaaagcta cgcctgacca
     1741 gcttggcgtc accgcagttg atgcccatac cttgaaaatt cagcttgata aaccgttgcc
     1801 gtggtttgtg aatttaaccg ctaactttgc cttcttcccg gtgcaaaaag ccaacgtaga
     1861 aagcggtaaa gagtggacga aacccggaaa tctgatcggc aatggcgctt atgttcttaa
     1921 agaacgcgta gtcaatgaaa aactggtcgt ggtaccgaat acccattatt gggataacgc
     1981 caaaacggta ctgcaaaaag tgaccttcct gccaattaat caggaatccg cagccactaa
     2041 gcgttacctc gcgggggata ttgatatcac cgaatccttc ccgaaaaata tgtatcagaa
     2101 gctgttgaag gatattccgg ggcaggttta tacgccgccg cagctcggga cctattatta
     2161 tgcgtttaac acgcaaaaag ggccgacggc agatcagcgc gttcgcctgg cattaagtat
     2221 gacgatagat cgccgcctga tgaccgaaaa agtgttggga acgggcgaaa agccagcgtg
     2281 gcattttaca ccagatgtta ccgccggatt tacgccggaa ccttcgccgt ttgaacaaat
     2341 gagtcaggaa gaactgaatg cgcaggcaaa aactttgttg agcgcagctg gttatggtcc
     2401 gcaaaaaccg ctgaagctga cgcttttgta taacacttca gaaaaccatc aaaaaattgc
     2461 gattgctgta gcatcgatgt ggaaaaagaa ccttggcgta gatgttaaat tgcaaaatca
     2521 ggaatggaaa acctatatcg atagccgtaa caccggcaat tttgatgtta tccgcgcctc
     2581 atgggtgggg gattataatg aaccctccac tttcctgaca ttattaacgt caacgcattc
     2641 aggaaatatt tcacgcttta acaatccggc atacgacaaa gttctggccc aggcatcgac
     2701 ggaaaatacc gttaaagcgc gtaatgccga ttacaacgcg gcagaaaaaa tcctcatgga
     2761 gcaagcaccg attgcaccaa tttatcaata taccaatgga cgattaatca agccgtggct
     2821 gaaaggttat cccattaata acccggaaga tgtggcgtac agccggatta tgtatattgt
     2881 gaagcattga tgtgatggga actggcgtta cccttgtgga taacgccagt gatgtctgat
     2941 ttagcgcccc tgttccggcg gtgtaatgtt atccatatac agcgtctggc tggggaaggc
     3001 aaagtccgcg ccgtgtgact gcacaatatc gataatcttc aaataaacgt cttgttgtgc
     3061 agcaagccat tcagcccata ccgtggtttt ggtaaagcaa taaaccataa tattcaatga
     3121 cgagtcggca aactggttga aataaaccag taaggtttgt cgctggtcga tggccgggtg
     3181 atttttcagc atctcacgta cggcttcgac aataacgccc acttttgccg catcctcata
     3241 acgtaaacca atggtcgtgg taatgcggcg gttggtcatt cgtcctgggt tttctacgct
     3301 gatcgacgaa aacagcgagt tcggtacgta caatggacga ttatcaaagg tcgtaatttt
     3361 ggtaattcgc cagccaattt ccgctactgt accttcgata tttctgtccg gtgaacggat
     3421 ccagtcgcca atactgaaag gacggtcgaa atagagcatg atcccggaaa agaaattact
     3481 cagaatatct ttaccggcca taccgacagc cagaccacca ataccaccaa aggtcagcaa
     3541 gccagaaagg ctcatgccga aatgttcgcc ataaagcaga acaagcacca caataatggt
     3601 gattttgata atgcgcgaca taatccgcgc actggtgata tcgcgacctt ttttaatctg
     3661 ctgtttttca aactgattaa tcagcaaaaa tagcttaatc gtcagaataa ccgcaatcag
     3721 ggacgtacag ataaaatcga taacgcctgg ggtgataaat ttgagtttat agttttctat
     3781 aacataatta ataatgctac caacagcact gataattatg gtgtagatta aaaattgcac
     3841 cgcatggaat aaaaaacctt ttcttttacg atttccgcgg cgaaaccaaa agctcatcag
     3901 aatcaatgct gcgcagctac cgaaaataat gaccagatta agcgcattat ttgtaaacag
     3961 ttcagcgatc attgttttat caggctcctc cagataattg tcgtcatgcc ggaaccccct
     4021 ggcggggcta ttttaccgcg acaattcatt cagatcatca atagtcaggg aaggaagta
//
LOCUS       DAJVUN010000256         3822 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.259, whole genome shotgun sequence.
ACCESSION   DAJVUN010000256 DAJVUN010000000
VERSION     DAJVUN010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3822
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.259"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..351
                     /locus_tag="OQQ76_003861"
     CDS             <1..351
                     /locus_tag="OQQ76_003861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliM/FliN family flagellar motor switch protein"
                     /protein_id="HCS1970168.1"
                     /translation="LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV
                     TNFADISLRLSQILKLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL
                     INPILNSLNEEQPK"
     gene            348..761
                     /gene="fliN"
                     /locus_tag="OQQ76_003862"
     CDS             348..761
                     /gene="fliN"
                     /locus_tag="OQQ76_003862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HCS1970169.1"
                     /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGG
                     GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
                     GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR"
     gene            764..1129
                     /gene="fliO"
                     /locus_tag="OQQ76_003863"
     CDS             764..1129
                     /gene="fliO"
                     /locus_tag="OQQ76_003863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliO"
                     /protein_id="HCS1970170.1"
                     /translation="MNNHATVQSSTPVSAAPLLQVSGALIAIIALILAAAWQVKRLGF
                     APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI
                     PQTDFQSVMKNLLKRSGRS"
     gene            1129..1866
                     /gene="fliP"
                     /locus_tag="OQQ76_003864"
     CDS             1129..1866
                     /gene="fliP"
                     /locus_tag="OQQ76_003864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310714.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HCS1970171.1"
                     /translation="MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQT
                     LVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS
                     PVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQ
                     GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA
                     LPFKLMLFVLVDGWQLLVGSLAQSFYS"
     gene            1876..2145
                     /gene="fliQ"
                     /locus_tag="OQQ76_003865"
     CDS             1876..2145
                     /gene="fliQ"
                     /locus_tag="OQQ76_003865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HCS1970172.1"
                     /translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI
                     NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG"
     gene            2154..2939
                     /gene="fliR"
                     /locus_tag="OQQ76_003866"
     CDS             2154..2939
                     /gene="fliR"
                     /locus_tag="OQQ76_003866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HCS1970173.1"
                     /translation="MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL
                     GLAMMITFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
                     GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG
                     GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLPLNLALGLLNRMAPQLSIFVIGF
                     PLTLTVGISLMAALMPLIAPFCEHLFSEMFNLLADIISELPLI"
     gene            3229..>3822
                     /gene="rcsA"
                     /locus_tag="OQQ76_003867"
     CDS             3229..>3822
                     /gene="rcsA"
                     /locus_tag="OQQ76_003867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HCS1970174.1"
                     /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD
                     SQRPSVVFINEDCFIHDASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLARKNLL
                     ISSKSIKPESLDNILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD
                     QMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNV"
BASE COUNT          905 a          919 c          950 g         1048 t
ORIGIN      
        1 ctgccattca gcatgatcga gccgctacgg gaattgttgg ttaacccgcc gctggaaaac
       61 tcgcgtaatg aagatcagaa ctggcgcgat aacctggtgc gccaggtgca gcattcacag
      121 ctggagctgg tcaccaactt tgccgatatc tcgctacgcc tgtcgcagat tttaaaactg
      181 aaacccggcg acgtcctgcc gatagaaaaa cctgatcgca tcatcgccca tgttgacggc
      241 gtcccggtgc tgaccagtca gtacggcact ctcaacggtc agtatgcgtt acggatagaa
      301 catttgatta acccgatttt aaattctctg aacgaggaac agcccaaatg agtgacatga
      361 ataatccggc cgatgacaac aacggcgcaa tggacgatct gtgggctgaa gcgttgagcg
      421 aacaaaaatc aaccagcagc aaaagcgctg ccgacgcggt gttccagcaa tttggcggtg
      481 gtgatgtcag cggaacgttg caggatatcg acctgataat ggatattccg gtcaagctga
      541 ccgtcgagct gggccgtacg cggatgacca tcaaagagct gttgcgtctg acgcaagggt
      601 ccgtcgtggc gctggacggt ctggcgggcg aaccactgga tattctgatc aacggttatt
      661 taatcgccca gggcgaagtg gtggtcgttg ccgataaata tggcgtgcgg atcaccgata
      721 tcattactcc gtctgagcga atgcgtcgcc tgagccgtta gtgatgaata accacgctac
      781 tgtgcaatct tccacgccgg tttctgctgc gccactgctg caggtcagcg gcgcactcat
      841 cgccattatt gccctgatcc tcgctgctgc ctggcaggta aaacggttgg gatttgcccc
      901 gaaacgcact ggcgttaacg gtctgaaaat tagcgccagt gcttcgctgg gcgcgcgtga
      961 acgggttgtg gtggtcgatg tggaagatgc acggctggtg ctcggcgtta ccgcagggca
     1021 aatcaatctg ctgcataaac ttcccccttc agcaccaaca gaagagatac cgcagaccga
     1081 ttttcagtcg gtcatgaaaa atttgcttaa gcgtagtggg agatcctgat gcgtcgtttg
     1141 ttgtctgtcg cacctgtcct tctctggctg gttacgcccc tcgccttcgc gcaactgccg
     1201 ggtatcacca gccagccgct gcctggcggt ggacaaagct ggtcgctccc ggtgcagacg
     1261 ctggtgttca tcacctcgtt gacgtttatt ccggcaattt tactgatgat gaccagtttc
     1321 acccgcatca tcattgtttt tggtttattg cgtaacgcgc tgggaacgcc ctccgcgcca
     1381 cctaaccagg tattgctggg gctggcacta tttttgacct tttttattat gtcaccggtg
     1441 atcgacaaaa tttatgtcga tgcgtaccag ccattcagcg aagagaaaat atcaatgcag
     1501 gaggcgctgg aaaaaggggc gcagccgcta cgtgagttta tgctgcgtca gacccgtgag
     1561 gcagatttag ggttgtttgc cagactagcg aataccggcc cgttgcaggg acctgaagcc
     1621 gtgccgatgc gcattttgct cccggcctac gtgaccagcg agttgaaaac cgcatttcag
     1681 ataggcttca cgattttcat tccttttttg attatcgacc tggtgattgc cagcgtgttg
     1741 atggcattgg ggatgatgat ggtccccccc gccaccattg ctctgccctt taaactgatg
     1801 ctgtttgtac tggtggatgg ctggcaattg ctggtcggtt cgctggcgca gagcttttac
     1861 agctagagag gcaaaatgac acctgaatcg gtcatgatga tggggactga agcgatgaaa
     1921 gtcgcgctgg cactggctgc cccgctgttg ctggtggcgc tggtcacggg ccttatcatc
     1981 agtattttgc aggccgccac gcagatcaac gaaatgacgc tgtcgtttat tccaaaaatc
     2041 atcgccgtat ttattgccat tattattgcc ggaccgtgga tgctcaatct gttgctggat
     2101 tacgtccgca ccttgttcac taacctgccg tatatcatcg ggtaggccgt acaatgatgc
     2161 aggtgacaag cgatcaatgg ctttcctggt taagcctgta cttctggccg ttactgcgcg
     2221 tgctggcgct catttctacc gcaccaattc tgagcgaacg cagcgtgccg aaacgggtaa
     2281 aactggggct ggcaatgatg atcacgttcg tcattgcccc atcattacct gccaacgatg
     2341 ttcctgtttt ttcgttcttt gctctgtggc tggccgtgca gcagatcctg atcggcattg
     2401 cgcttggttt taccatgcaa tttgcctttg ccgctgtgcg aaccgctggc gaaattatcg
     2461 gtctgcaaat ggggctgtca tttgcgacgt ttgtcgatcc ggccagccat ctcaatatgc
     2521 ccgttttagc gcgtatcatg gatatgctgg cgttactgct gttcctgaca tttaacggtc
     2581 atttatggtt gatttcactg ctggtcgata cctttcacac cctgccaatt ggtggcgaac
     2641 cgttgaacag caatgcgttt ctggcactca ccaaagcggg gagtttgatt ttccttaacg
     2701 ggctgatgct ggcgttaccg ctcattactc tgctgctgcc cctgaatctg gcattaggtt
     2761 tactgaatcg tatggccccg caattatcca tttttgttat tggatttcca ttaactctga
     2821 ctgtcggtat ctctttaatg gcggcattaa tgccgttaat tgcacctttt tgcgaacatt
     2881 tattcagtga gatgtttaat ttgctggctg atattattag tgaattgcca ttaatataat
     2941 tccgtaacgt ttatcatgtt atcctaagga ttatccgaaa aataatacct acgaacatct
     3001 tccaggatac tcctgcggcg aaatatttgt tttaagctca ctcacatatc gcaacattta
     3061 ctttacttta agacaattcc aggcaaatta tacaacactt tacgggatag taagtccgcc
     3121 tgaaaaatcg cgagagtggc gcattaggtg acccatgttg ttccgtttag tcatgatgaa
     3181 atattcaggt aaggggaatt atcgttacgc attgagtgag ggtatgccat gtcaacgatt
     3241 attatggatt tatgtagtta cacccgacta ggtttaaccg ggtatctgtt gagtagaggg
     3301 gttaaaaaaa gagaaatcaa cgacattgaa accgttgatg accttgccat agcttgtgat
     3361 tcacagcgcc cttcagtggt gtttattaat gaggactgtt tcatccatga tgcttctaac
     3421 agtcagcaca tcaagcacat cattaatcaa catcccaata cgttatttat cgtttttatg
     3481 gcaattgcca atgttcattt tgatgaatat ctattggcca gaaaaaattt attgataagt
     3541 tctaaatcga ttaaaccgga atctctcgac aatatccttg gcgatattct gaaaaaagag
     3601 acaacgataa cctctttttt aaatatgccg acgttatcat tgagccgaac cgaatcgagt
     3661 atgttgcgaa tgtggatggc aggtcaggga accattcaaa tctctgacca aatgaatatc
     3721 aaagccaaga ccgtttcatc gcataaaggt aatattaaac gtaagatcaa aacgcataat
     3781 aaacaggtta tctaccatgt cgtccgactg acggataatg tg
//
LOCUS       DAJVUN010000257         3813 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.260, whole genome shotgun sequence.
ACCESSION   DAJVUN010000257 DAJVUN010000000
VERSION     DAJVUN010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3813
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.260"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1089
                     /gene="nadB"
                     /locus_tag="OQQ76_003868"
     CDS             <1..1089
                     /gene="nadB"
                     /locus_tag="OQQ76_003868"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HCS1970175.1"
                     /translation="VVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSG
                     DGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPD
                     FDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGID
                     LTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECL
                     VYGWSAAEDITRRMPDAHGVSTLPPWDESRVENPDERVVIQHNWHELRLFMWDYVGIV
                     RTTKRLERALRRINMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRG
                     LHFTLDYPELLTHSGPSILSPGNHYINR"
     gene            complement(1074..1811)
                     /gene="trmN"
                     /locus_tag="OQQ76_003869"
     CDS             complement(1074..1811)
                     /gene="trmN"
                     /locus_tag="OQQ76_003869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417070.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(1)(Val)
                     (adenine(37)-N(6))-methyltransferase TrmN"
                     /protein_id="HCS1970176.1"
                     /translation="MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAG
                     VKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHT
                     ADIQQWLIQQTVRFDLIISNPPYYQQGVECAIPQREQARYTTTLDHPSLLTCAAECIT
                     EEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS
                     DRLVIRGPDQNYSEAYTALTQAFYLFM"
     gene            1943..3277
                     /gene="srmB"
                     /locus_tag="OQQ76_003870"
     CDS             1943..3277
                     /gene="srmB"
                     /locus_tag="OQQ76_003870"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HCS1970177.1"
                     /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV
                     LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH
                     THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD
                     RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE
                     RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC
                     YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH
                     RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPSEKQTG
                     KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE"
     gene            complement(3486..>3813)
                     /locus_tag="OQQ76_003871"
     CDS             complement(3486..>3813)
                     /locus_tag="OQQ76_003871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HCS1970178.1"
                     /translation="LSGDSGGQSNVFRQIFESTLRQRRITVENTIELLSIERIKRCVA
                     ANIGVSYLPRFAVEKELESGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQCIE
                     ECFLPG"
BASE COUNT          952 a         1043 c          995 g          823 t
ORIGIN      
        1 gttgtaggcg cgtgggtatg gaaccgaaat aaagaaacgg tggaaacctg ccacgcaaaa
       61 gcagtggtac tggcaaccgg cggtgcgtcg aaggtgtatc agtacaccac caatccggat
      121 atttcttctg gcgatggcat tgctatggcg tggcgcgcgg gctgtcgggt tgccaatctc
      181 gaatttaatc agttccaccc taccgcactg tatcacccac aggcacgcaa tttcctgtta
      241 acggaagcac tgcgcggcga aggcgcttat ctcaagcgcc cggatggcac gcgttttatg
      301 cccgattttg atgagcgcgg cgaactggcc ccgcgcgata ttgtcgcccg cgccattgac
      361 catgaaatga aacgcctcgg cgcagattgt atgttcctcg acatcagcca taagcccgcc
      421 gattttattc gccagcattt cccgatgatt tatgaaaaat tgctcgggct ggggattgat
      481 ctcacacaag aaccggtacc gattgtgcct gctgcacact atacctgcgg tggtgtaatg
      541 gttgatgatc atgggcgtac ggacgtcgag ggcttgtatg ccattggcga ggtgagttat
      601 accggcttac acggcgctaa ccgcatggcc tcgaattcat tgctggagtg tctggtctat
      661 ggctggtcgg cggcagaaga tatcaccaga cgtatgcctg atgcccacgg cgtcagtacg
      721 ttaccaccgt gggatgaaag ccgcgttgag aaccctgacg aacgggtagt aattcagcat
      781 aactggcacg agctacggct gtttatgtgg gattacgtcg gcattgtgcg cacaacaaaa
      841 cgtcttgagc gcgccctgcg gcgtatcaat atgttgcaac aggaaataga cgaatattac
      901 gcccacttcc gcgtgtcgaa taatttgctg gagctgcgta atctggtgca ggttgcggaa
      961 ttgattgttc gctgtgccat gatgcgcaag gagagtcgtg gcctgcattt cacactggat
     1021 tatccggaac tgctcaccca ttccggtccg tcgatccttt cccccggcaa tcattacata
     1081 aacagataaa aagcctgggt cagcgccgta tacgcttcgg aatagttctg gtctggccca
     1141 cgaatgacta agcgatcgct aaagcattct cccgcctgcg gggagaatgc cagcagcacc
     1201 cgatgcggca gtcgcgcttc gttttccgcc acatccgtcc gcaaacgtaa atgccagccc
     1261 atgcttaatg ccagctccgt aaaaccatta ccaatctgct ctggcagcac tacgcagaaa
     1321 aatccctctt cggtaatgca ctccgccgca caggtcagca gcgatgggtg atcaagcgta
     1381 gtggtatagc gagcctgttc ccgttgaggg atcgcgcact ctactccctg ctgatagtaa
     1441 ggtgggttac tgatgattaa atcgaagcgt actgtctgct gtatgagcca ctgctgaata
     1501 tccgccgtat ggacgttaat ccgctctgcc cacggggact ggttgatatt ttcctgcgcc
     1561 tgcgcggcag cttcactttc cagctcaacg gcatcaatta tcacgctgtc actggttcgc
     1621 tgcgccagca tcagtgccag caacccgcta cccgcgccga tatcaaggca acgtttcacc
     1681 ccagccaccg gtgcccatgc gcccagcaaa atgccatccg ttcccacttt catcgcacag
     1741 cgatcgtgag caacaaaaaa ctgtttaaaa gtaaatccat tacgacgaag cacggatgta
     1801 gactgtgaca tgaaaataaa accttgcagg aaaaacggcg atagcaccgg gtgagaacaa
     1861 tacccgagaa gcgatatcca tacaaacaga tgaagattgc agccgtaacg tctataatca
     1921 gcgccccaca cagaggtaga acatgactgt aacgactttt tccgaacttg aactcgacga
     1981 aagcctgctg gaagccctcc aggataaagg tttcactcgc ccgaccgcca ttcaggctgc
     2041 cgccattccg cctgcgctcg atggccgtga tgtactcggt tctgcgccga caggcaccgg
     2101 taaaacggcg gcgtatctgc tgccagcgtt gcagcacctg ctcgatttcc cgcgtaagaa
     2161 atccggtccg ccgcgtattt tgatcctcac cccaactcgc gagctggcga tgcaggtggc
     2221 cgatcatgcc cgcgaactgg cgaaacatac gcatctggat atcgccacca ttaccggcgg
     2281 cgtagcctat atgaaccacg cggaagtgtt cagcgaaaat caggacatcg tggtcgccac
     2341 gaccggacgt ctgctgcaat acataaaaga agagaacttc gattgccgcg cggttgaaac
     2401 gctgatcctc gacgaagcag accgtatgct ggatatgggc ttcgctcagg atatcgaaca
     2461 tattgctggc gaaacgcgct ggcgtaaaca gaccctgctc ttttcggcaa cgctggaagg
     2521 cgatgcgatt caggactttg ccgagcgtct gctggaagat ccggtggagg tttctgccaa
     2581 tccgtccacc cgtgagcgca aaaaaattca tcagtggtat taccgcgccg atgacctgga
     2641 acataaaacc gcattgctgg tgcatctgtt aaaacagccg gaagcgaccc gctcaattgt
     2701 gtttgtgcgt aagcgtgaac gtgtgcatga gctggcaaac tggctgcgcg aagcgggcat
     2761 caacaactgc tatctcgaag gtgagatggt acagggcaag cgtaatgaag cgattaaacg
     2821 cctgaccgaa ggccgcgtaa acgtactggt agcaaccgat gttgccgcgc gcggtatcga
     2881 cattccagac gtcagccacg tctttaactt cgatatgccg cgcagtggtg atacttattt
     2941 gcaccgtatc ggacgtaccg cgcgcgccgg tcgtaaaggc accgcgattt cgctggtgga
     3001 agcccatgac catctgctgc ttggcaaagt tggccgttat attgaagagc cgataaaagc
     3061 tcgcgtcatt gaggaactac gcccgaaaac gcgtacgcca agcgagaagc agaccggcaa
     3121 gccatcgaag aaagtactgg caaaacgcgc cgagaagaaa aaagctaaag agaaagagaa
     3181 gccgcgggtg aaaaaacgcc atcgcgacac caaaaatatt ggtaagcgcc gtaaaccgag
     3241 cggaacgggc gtgccaccgc aaacgacaga agagtaatct taattccggg tttaagcccg
     3301 gaattaaaag tgctggcaaa cgcaaaactg cctgatgcgc tacgcttatc aggcctacat
     3361 ggctcatgca atatattgaa tttgcacgat cttgtaggcc ggataaggcg ttcacgccgc
     3421 atccggcatg aacaaaacgc acttcgtcga caagttgggt gccgggttta agcccggcat
     3481 tatttttatc ccggcaaaaa acactcttca atacactgaa taaaagtgtg catcgccggg
     3541 ctaaccgctt ttccagcatg gtgtgcgcac atggccgtaa tggtctgcga ctgttcgcca
     3601 aaaggcaatt caattaattc tccgctctca agctcttttt ccaccgcaaa gcggggcaag
     3661 taactgacac cgatattcgc cgcgacacaa cgtttgattc tttcaatgct taacagctca
     3721 atggtgtttt ccaccgtgat ccgccgctga cgcagcgtgc tctcaaatat ctgccggaag
     3781 acattagact ggccccctga atctccagac aac
//
LOCUS       DAJVUN010000258         3758 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.261, whole genome shotgun sequence.
ACCESSION   DAJVUN010000258 DAJVUN010000000
VERSION     DAJVUN010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.261"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(75..293)
                     /gene="osmB"
                     /locus_tag="OQQ76_003872"
     CDS             complement(75..293)
                     /gene="osmB"
                     /locus_tag="OQQ76_003872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmB"
                     /protein_id="HCS1970179.1"
                     /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG
                     GAVLTDGSTLGTLGGAAVGGVIGHQVGK"
     gene            complement(562..1311)
                     /locus_tag="OQQ76_003873"
     CDS             complement(562..1311)
                     /locus_tag="OQQ76_003873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HCS1970180.1"
                     /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL
                     SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA
                     RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
                     SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVE
                     RFNRVITDSKIRASDLMHLEHSKLTVHVVDI"
     gene            complement(1401..1574)
                     /locus_tag="OQQ76_003874"
     CDS             complement(1401..1574)
                     /locus_tag="OQQ76_003874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970181.1"
                     /translation="MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVA
                     ESTPDIPKAPWEI"
     gene            complement(1721..3706)
                     /gene="pdeR"
                     /locus_tag="OQQ76_003875"
     CDS             complement(1721..3706)
                     /gene="pdeR"
                     /locus_tag="OQQ76_003875"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HCS1970182.1"
                     /translation="MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTL
                     QLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINNREWAGNASAWHDTPAV
                     ARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLF
                     MSRREAAASRRNNRVFFRSGNAYKVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLIC
                     SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDN
                     FKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMA
                     SRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF
                     CVFTPEMNQQVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPER
                     GLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQT
                     IFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGPGY
                     SSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKE
                     DAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA"
BASE COUNT         1020 a          905 c          855 g          978 t
ORIGIN      
        1 ttattcagtt atttcgtact gaacaaaatc aagcgtatta taattgcgag tcgataatcg
       61 acatttattt acgattattt accgacctgg tgaccaataa caccaccgac agctgcacca
      121 cctaatgtac ccaacgtact gccatcggtc agtactgcac cgcctaatgc ccctgcaccc
      181 gcgccgattg cggtgttgcg gtcccgttta gaccagttag aacaggcact cagagacatt
      241 gccaaagtaa ttgccagaac agccgcggtc atttttttgc tcgttacaaa cataatactc
      301 tctcctgaat ttatgattca cggaagtaag ctctctataa ctataatagc taagaataag
      361 cctggtgaaa ttattccgtg aaatctgctc gcgcgcaggg ttatatcacg caggtgataa
      421 tgacttcctg ttatatcgct gataataatt ttatatctta agcgtgttaa taacaggtaa
      481 atagtcttaa ttatcaacca ggaatcatct tagagcggat gatttgccaa actgcaaatc
      541 atccgtagag aagggaaatg gttaaatgtc aacgacgtga acggtgagtt tactgtgctc
      601 aagatgcatc agatcgctgg cgcgtatttt cgaatcggta atcacgcgat tgaatcgctc
      661 aacgggaccg atggagtatg aatgtacagc accaaatttc gagctgtcag tcaggactat
      721 cacttcgcac tctttttcca gcacggcatt gaccacatcg gtacgcatca tatcgcgacc
      781 ggtgaatcca gtttcaggtt gccagccatc aataccaata aatgctttgc tgaaatgcac
      841 ctgctggatg cactggcgtg tcaacgggcc aaccatactt tcgctttttt tctggtacac
      901 gccaccgagc aaaatgactt cacaaggcgc gtctttcagc aaatgcgcga tgtagctgct
      961 gaccgtgatg atagtgacat ttttcttctg ctcccccaga gtccgggcga gcagggcatt
     1021 gctgctgcca ttttcgataa agatggtttc gcccggttga accagtgacg cggcaaactc
     1081 ggcgagttca cgcttcagcg tatagttgct catcatacgg gtttcgacgt catcactatc
     1141 aagcgaaact gcaaagccat gtgcacggcg gaggtaactc agtttttcga gggtgttgag
     1201 atcctggcga atggtaactt cagaaactcc agtggctttt gccagatcgg ttacgctaac
     1261 ctgaccctgg tcaatgacca tctgtagaat agtttgttgt cgggaattca tcgctgtaat
     1321 tcttataacg ttataatact aaataaaaaa atactgacgc gccgggcatc ctcaaatagg
     1381 aaaacctgaa ggcacgattg ttaaatctcc cacggtgcct tcgggatgtc tggcgtagat
     1441 tcagcaacct ggcgcaagag ttctgcttta agtatctcga gattatggat cgcagagtgg
     1501 taatcgcctg ccacaaggat atctaacaca atatcaatac gttcggcaac gcgctgggca
     1561 tcaaattcag acatcaagga catccttata gcaaaagtgg aaaatgaata atgcaaaaat
     1621 tgccgctaaa agagaagtgt ttaacagcaa cggctaatta tcatctagga atacgatata
     1681 taatgacggg atatagcgct aagtatatat attcatctac ttatgcgcgc ttcagatagc
     1741 gtttatacca gcgttcgaag gcgacggcgg gcatcggttt ggcaaacaaa aatccttgcc
     1801 gctcattgat cccgttcttg gttaaaaaag catcttcctt tgcactctct acaccttcgg
     1861 cgatcacctg aagattcaat gcctgggcca cagcgacgat cgcccggacc agtgactgcg
     1921 agacaggttg tttgtgaata tctcgaacaa aaacctggtc aagtttgatg gcatcgatcg
     1981 gaaagcgcgc cagttgcgaa agtgaagagt agccgggacc aaaatcatcc agatgcactt
     2041 gcgcacctag ttggctaaat tgttgaataa cagacagtgc cagttcatca ttctcaatca
     2101 gacaactctc tgtcagttca acatctatag ggcagtattc aaaattgagt tcctggagaa
     2161 cctgtttcag ggcggtgaaa atggtttgat cggcgagctg acgtgcagaa atatttaccg
     2221 ccactcgcag gtttatgcct ttatcccgcc actttgccac ctggcgtacg acatcgagaa
     2281 tcacccaacg gcctaaaggc acaattagcc ctgactcttc ggcgtaggaa atgaagtcca
     2341 acggtggaat caacccacgt tcaggtgact gccaacgtac tagtgcttcc agactgcgca
     2401 cttcgccacg ccaggtgatt ttcggttgat agtgaataac caactgatcg ttttccagtg
     2461 ctttacgcaa gttggtatcc agccagagat attcaaatac ctgttgattc atttctgggg
     2521 taaaaacgca aaattgtcct cgtccgcctt ccttcgctgt gtacattgct gtgtcggcgt
     2581 gacgaataat agccgtgctg tctgaaccat gttcgggaga gagtgcaata cctactgaac
     2641 agctggtata aacttcaatt aaaccaatgc gaaaggggag ccgtaagcgg gtcaaaattc
     2701 gtgatgccat tgcttccagc gcgctttgtg aggtgttgga tgccagtacc agaaactcat
     2761 ccccacctgg acgcgccaac acctggtcat gttcgagaca gcttaaaata gccaatgaca
     2821 cgtcgcgtaa taactggtca ccaaacaaat gcccataggc gtcgttgacc tttttgaaat
     2881 tatccaaatc aagatacaca accccaactt tattgttatc tgcatgatta atagcgtgat
     2941 cgattaaatc ctgcattgcg ttacgattcg gcagtccggt gatactgtcg gtatttgcca
     3001 gaatacgcag tcgctcctga gcgcggcgct cttcggtaat gtcggtgccg gaacagatta
     3061 aaaaaatctc gtttttgcca ctgccgctgt ggacaaattt attgcgaaac agaaacagcc
     3121 gctggccttt acatgttggt atccacagtt cgactttata tgcattgccg cttcgaaaaa
     3181 atacacggtt attgcgcctg gatgccgcag cttcacgacg gctcataaac agtttaaaca
     3241 cgctttggcc aatgacgtcg tgttctttca acccagtgta atcttcacat aaccgattga
     3301 agcgttggat attcccccgg ctgtcgagaa tcactattgc ggaatgtgct tcagaaacta
     3361 cctgctcagc aaaggaaagc ccgtgtgata aatcacgagc aactgccggt gtgtcatgcc
     3421 atgcagacgc gttgccagcc cattcccggt tattgatttt tcgtcctacc agatgcacag
     3481 aaagatcgct ctcatcgacg gtcagactca tcatcaggct ggaggtgatg accgtcattt
     3541 ccctgatgcg agcagcctgt tcggcagata actgcaaagt acgatcaggt tctgtggttt
     3601 cggtggtaga aaagcgcaaa acatcgctgc tttccgtcaa ccgccagtat ggattgtgcg
     3661 atccgagaaa gttgtacaac gttgtggact ccctaacggt tttcatgatg catatcctcc
     3721 ggttaacagc ggagtccgcg gttaaataaa aggaacaa
//
LOCUS       DAJVUN010000259         3752 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.262, whole genome shotgun sequence.
ACCESSION   DAJVUN010000259 DAJVUN010000000
VERSION     DAJVUN010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.262"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..77)
                     /locus_tag="OQQ76_003876"
     CDS             complement(<1..77)
                     /locus_tag="OQQ76_003876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1970183.1"
                     /translation="MQDIREERLNESVKSEQSPRVVLWE"
     gene            complement(77..406)
                     /locus_tag="OQQ76_003877"
     CDS             complement(77..406)
                     /locus_tag="OQQ76_003877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970184.1"
                     /translation="MKTFRWKVKPDMEVNSRPSVREVRFGDGYSQRMAAGLSADLKTY
                     RVTLSVTREEARHLEEFLAEHGGWKAFLWTPPYAYRQIKVTCAGWSARVGMLRVEFSA
                     EFKQVVN"
     gene            complement(403..3015)
                     /locus_tag="OQQ76_003878"
     CDS             complement(403..3015)
                     /locus_tag="OQQ76_003878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1970185.1"
                     /translation="MSQPAGDLVIDLSLDAARFDEQMARVRRHFSSLEADARKTASTV
                     EQGLSRQALAAQKAGISVGQYKAAMRTLPAQFTDIVTQLAGGQNPFLIMLQQGGQISD
                     SFGEPLSLLTLLKEELLGIRDASESSEESLSDTANALAENARNAGELGRFMSVVRVAA
                     GGGVAVLAVLAAAAWQAEQADRALLRSLILTGGAAATTTAELWKMAGVISDEAGGGIR
                     QAAENLARLAESGKYTAGQLRIMGETSQRWLQTVGDDAGKVEKAFEGIAADPVKALAS
                     LNQQYNFLSVSQLRHIDELERTKGKQAAVTEAMSLFADVMNARLEQLDKAATPVEKIW
                     DDVKTWTSDAWAWIGDHTLGALSLITDVVAGTVEQVKLLLVQGDLALAEFIQSAWETT
                     KNVPGVGALFGELAEENRVFIEKTKRDELALRKSIAERDARIRQGEMGYINRSRATGV
                     SKGLGQQEAVSRLAEELTGKKHTSPKTRSAGEREEEQAREALLALEAELRTLEKHSGA
                     NEKISRQRRDLWKAESQYAVLKEAATKRQLSWQEKSLLAHEKETLEYKRQLAELGDKI
                     EHQKRLNELAQQAARFEQQQSAKQAAISAKARGLTDRQAQRESEEQRLREVYGDNPAA
                     LAKATSALKNTWSAEEQLRGSWMAGMKSGWGEWAESATDSFSQVKSVATQTFDGIAQN
                     MAAMLTGSEQNWRGFTRSVLSMLTEIFLKQAMVGIVGRIGSAIGGAFGGGASASTGTA
                     IQAAAANFHFATGGFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYAEG
                     GYVGGAGSPAQMRRAEGINFNQNNHVVIQNDGPNGQAGPQLMKAVYEMARKGAQDELR
                     LQLRDGGLLSGSGR"
     gene            complement(2996..3409)
                     /locus_tag="OQQ76_003879"
     CDS             complement(2996..3409)
                     /locus_tag="OQQ76_003879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
                     /protein_id="HCS1970186.1"
                     /translation="MGRPDWRAMLAGMTSTEYADWRRFYCTHYFQDTQLDAHFSGLMY
                     AVLSLFFGDPDMHPADFSLLAPACEEEQTEMPDEEEMLMQKATGVAGGVRFGGDGGRD
                     ISPSANVVDVSEDDVALMMASAGISGGVRYVPASG"
     gene            complement(3432..3743)
                     /locus_tag="OQQ76_003880"
                     /pseudo
     CDS             complement(3432..3743)
                     /locus_tag="OQQ76_003880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001447581.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
BASE COUNT          745 a         1270 c          873 g          864 t
ORIGIN      
        1 atttcccaga gtaccacccg cggtgactgc tctgacttaa ccgactcgtt cagcctttct
       61 tcgcgaatat cctgcatcag ttcaccacct gcttaaactc cgcgctgaac tcaacgcgca
      121 acatcccgac ccgcgcagac cacccggcac aggtcacctt tatctgccgg tatgcataag
      181 gcggtgtcca cagaaacgcc ttccagccac cgtgctctgc caggaattcc tccagatgcc
      241 gggcttcctc ccgggtcacg gaaagcgtca cccggtatgt tttcaggtca gcactcagcc
      301 ctgccgccat acgctgcgaa tagccgtcac caaaacgcac ttcacgcacc gatggccgcg
      361 agttcacctc catatccggt ttcactttcc agcgaaaggt tttcatcgcc cgctccccga
      421 taacagaccg ccatcacgca actgcagccg gagctcatcc tgcgcacctt tacgggccat
      481 ctcatacacc gctttcatca gctgcggccc tgcctgcccg ttggggccgt cgttctgaat
      541 caccacgtga ttgttctgat taaaattaat gccttcggcc cgccgcatct gcgccggact
      601 tccggcaccg ccgacataac caccttccgc atacccgcgc atcagacgat acaggttgcc
      661 gacaccaatc cggctggtcg cctccttcgt gaagacaaac tccccgcgat ggacaatccc
      721 cgcaggctca tatttgccgc ccgtccccgt aaatcctccg gtcgcgaaat ggaagttcgc
      781 cgccgcagcc tgaatggccg tccccgtgga agcggatgcg ccaccaccga aagcaccacc
      841 aatggcgctg ccgatacgcc cgacaatccc caccatcgcc tgcttcagaa aaatctctgt
      901 cagcatggag agcacggaac gggtgaaacc acgccagttc tgttcgctgc cggtcagcat
      961 cgccgccata ttctgtgcaa taccgtcaaa ggtctgcgtg gccacacttt ttacctgcga
     1021 aaaactgtcc gtcgcacttt ccgcccactc gccccagccg gacttcatcc cggccatcca
     1081 gcttccacga agctgctcct ccgcagacca ggtgttcttc agtgcagatg tggccttcgc
     1141 cagcgcagcc ggattatcac cgtacacctc acgaaggcgc tgctcttccg actcccgctg
     1201 cgcctgacgg tcggtgagtc cgcgggcttt tgcgctgatt gccgcctgct tcgcgctctg
     1261 ctgctgttca aaccgcgccg cctgctgtgc cagctcattc agccgcttct ggtgttcaat
     1321 cttgtctccc agctcagcca gctggcgttt gtactccagc gtctctttct catgagccag
     1381 cagggatttt tcctgccagg ataactgccg tttcgtggca gcctctttca ggaccgcata
     1441 ctgactttcc gccttccata aatcacggcg ctgccggctg attttctcat tcgcaccgct
     1501 gtgtttttcc agcgtcctga gctcagcttc aagggcaagc agagcctctc ttgcctgctc
     1561 ctcttccctc tccccggcag agcgcgtttt cggtgatgta tgctttttac ctgtcagctc
     1621 ttcagccaga cggctgacgg cttcctgctg cccaagacct ttgctgacgc ctgttgcacg
     1681 cgagcggttg atgtacccca tttccccctg gcgtatacgc gcatcccgtt ccgcaatgga
     1741 ttttctcagc gccagttcat cgcgttttgt tttctcaata aatacgcggt tctcttctgc
     1801 cagttcacca aacaacgcac caacgccggg cacattcttt gtcgtttccc aggctgactg
     1861 aataaattca gccagtgcca gatccccctg cacaagcagc agcttcacct gttcaacggt
     1921 tccggccacc acgtcagtga tcagactgag tgcccccagt gtatgatcac ctatccatgc
     1981 ccatgcgtca gaagtccagg ttttaacatc gtcccagatt ttttccaccg gcgtggccgc
     2041 tttatcaagt tgctccagac gtgcattcat gacatccgca aacagggaca tcgcctccgt
     2101 caccgcagcc tgtttacctt tcgtgcgctc aagctcatca atatggcgta actgggaaac
     2161 gctcaggaag ttatactgct gattcaggga ggccagcgcc ttcaccggat ctgctgcaat
     2221 cccttcaaag gctttttcca ccttcccggc atcgtccccc accgtctgca gccatctctg
     2281 agaggtttcc cccatgatcc gtagctgccc ggcggtatat ttcccgcttt ctgccagacg
     2341 ggccagattt tctgccgcct gtctgatacc accaccggct tcatcgctga tcaccccggc
     2401 cattttccac aattctgccg ttgtggtggc agccgcccct ccggtcagga tcagtgaacg
     2461 caataaggcc cggtcagcct gctctgcctg ccaggcggcg gcagcaagca cggccagtac
     2521 ggcaaccccg ccacctgccg ccacacggac caccgacata aatcgtccca gctcaccggc
     2581 attccgggca ttttcagcca gtgcatttgc cgtatctgac agcgactcct ctgatgattc
     2641 agaggcatcc ctgatcccga gaagttcctc cttcagcagg gtaagcaggc tgagcggttc
     2701 accgaatgaa tcgctgatct gccccccctg ctgcagcatg ataaggaagg gattctgacc
     2761 accggcaagc tgagtgacaa tatccgtgaa ctgtgcgggc agtgtgcgca tggcagcctt
     2821 atactgtccg actgatatcc cggctttttg tgcagccagc gcctgtcggc tcagcccctg
     2881 ttcaacagta ctggcggttt ttctggcatc cgcctccaga ctggaaaaat gacggcgtac
     2941 ccgggccatc tgttcatcaa accgggccgc atccagactc aaatcaataa ccagatcacc
     3001 cgctggctgg gacatatctc acacctccgg aaatccccgc tgaagccatc attaatgcaa
     3061 catcatcctc gctgacatcc accacattcg cagaaggtga aatatcgcgc cctccgtccc
     3121 ctccgaaccg gacgcctccg gcaactcctg tcgctttctg catcagcatt tcttcctcgt
     3181 ccggcatctc cgtctgctct tcctcacacg ctggagcaag cagactgaaa tccgccggat
     3241 gcatatccgg atcgccaaaa aacaggctga gtacggcgta catcagcccg gaaaaatgag
     3301 cgtccagttg ggtatcctga aaataatgcg tgcagtaaaa acgtcgccag tcggcatatt
     3361 cggtggatgt catcccggca agcatggcgc gccagtcggg tctccccatc tctcgcgcca
     3421 gtttcaggac aagttaccgg ctcagtcgct tctgctttcc cggtttgttc aggatcggca
     3481 tcgtgccggt tatccagcat acctgaaaga taaagcaccc ggttcgttgc ctgattcagt
     3541 gcatcagcag gccatcccag catcacttca cggcggatct gctgcatctc tgtctccgga
     3601 gaggccagag tgcctttgag ggaatgggta tgccatagcg acatcgccac aagcagggat
     3661 gccgtttcca gatatcgctg gttaatgtgc acgacatcat gcttcgttgt ctcctgttgt
     3721 tctgcgtctg aaacaaactt tatataatca aa
//
LOCUS       DAJVUN010000260         3725 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.263, whole genome shotgun sequence.
ACCESSION   DAJVUN010000260 DAJVUN010000000
VERSION     DAJVUN010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3725
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.263"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            37..264
                     /locus_tag="OQQ76_003881"
     CDS             37..264
                     /locus_tag="OQQ76_003881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HCS1970187.1"
                     /translation="MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDS
                     AWRYVTILDLPFSLVFDTLLLPIDIHHGPYE"
     gene            complement(265..639)
                     /locus_tag="OQQ76_003882"
     CDS             complement(265..639)
                     /locus_tag="OQQ76_003882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309456.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secY/secA suppressor protein"
                     /protein_id="HCS1970188.1"
                     /translation="MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQD
                     GDIMWQVEFFADEGKEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE
                     FQLEPPLDTEEGRAAADEWDER"
     gene            complement(722..1946)
                     /gene="mdtG"
                     /locus_tag="OQQ76_003883"
                     /pseudo
     CDS             complement(722..1946)
                     /gene="mdtG"
                     /locus_tag="OQQ76_003883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtG"
     gene            complement(2117..3037)
                     /gene="lpxL"
                     /locus_tag="OQQ76_003884"
     CDS             complement(2117..3037)
                     /gene="lpxL"
                     /locus_tag="OQQ76_003884"
                     /EC_number="2.3.1.241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) lauroyltransferase"
                     /protein_id="HCS1970189.1"
                     /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGL
                     GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR
                     RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL
                     IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ
                     AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV
                     VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY"
     gene            3262..>3725
                     /locus_tag="OQQ76_003885"
     CDS             3262..>3725
                     /locus_tag="OQQ76_003885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HCS1970190.1"
                     /translation="MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDA
                     LYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDD
                     GKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFID"
BASE COUNT          917 a          952 c          944 g          912 t
ORIGIN      
        1 cgttatgccg gtattttttt acggaagagg tatcaaatgc gtttaattgt ggtgagcatc
       61 atggtgacct tgctgagtgg ctgtggcagc attattagtc gcactatacc ggggcagggg
      121 catggcaacc aatattatcc cggtgtgcaa tgggatgtgc gtgactccgc ctggcgttat
      181 gtcacaatcc ttgatctgcc attctccctg gtttttgata ctttactgct gccgatcgac
      241 attcatcatg gcccgtatga gtgattaacg ttcatcccac tcatcagctg ctgcgcgtcc
      301 ttcctcggta tccagcggtg gctcaagctg aaattccccc tcgtcccatt catgtaatgt
      361 attctcttcc tgccactcct ggcgtatctc tatctcatca tagtcgccat caaaaacact
      421 ttgcgcggct tcaccgctaa gcataggtaa acattcacct tctttccctt cgtcggcaaa
      481 aaactcaact tgccacatga tgtcgccgtc ctgcaaaacg tatttttggg cattgaactg
      541 ttgcacattc gcatcttcgg cgtcgatgcc ggggttgtct gcaagaaatt cttcgcgtgc
      601 agcgtcaatg gcttcttcaa gcgttgcgta catggtcatc acgattctcc ctttgagttg
      661 atgaggtttc agggaaaagg atagctgatt ctccgctttt gcaagtatga aaggcgaaaa
      721 atcagttcga tacctggggt attcgacgac gacgtagact gttccatgaa tagactgcgt
      781 tgaataacac tacgccagcg gtgacgagaa ataccgctct gaaaccgtag ttcgctgaaa
      841 tcgctgctcc catcaatggt ccggtaacgt tgccaatatc acgaaacgat tggttatagc
      901 tgaagatacg cccggcgatc tggttgctcg agttgtaaac caacaatgtc tgtacggcgg
      961 ggagtagtgc accatcggcg gcaccgagca aaaaacgtaa aatcccaagt tgcaatggcg
     1021 tctgaacgta agacattggg atcaacagca gtacagaaaa gatcagcgct gtaatcagaa
     1081 tcttttcggg tccgattcga tcgccaagtt tgccgagtcg tggtgcactt agcagagccg
     1141 ccacgcctgg caccgaggcg atcatgccac tgataaaggc gacgttactg acgttacccg
     1201 ccagttcgcg gacatacagc gtcagaatgg gggcaattga gcccgtcgcc acctggatga
     1261 ttaacgtagt gacaaacagg ctgagtacca gtttcgggtt tttaagtgat gtcaccactt
     1321 cccgcatgtg cagcatctct tttttgctga ccggctggaa tttttctctg atgcaaaaca
     1381 gggtgacgaa aaagcagagt atgagcacac tggcggtaat aaagaatacc ggacgtaagc
     1441 cgtagctatc ggcgagcagg ccgccagcca ttgggccgag caacgcacca ccaacgccgc
     1501 ctgtggagag cgtacccagc gcccagccgc ttttattacg cggtacttgt gtggcgataa
     1561 gagcattagc gttggggaca aatccgccaa gtaacccaag aagcgcccgc aggatcaaaa
     1621 actgccagat attttgtgcc agccccatca acaccatcac gatgcccatg ccgagggcag
     1681 agcgtaatag catgagtttt cggcctttac ggtcggcgag tccaccccaa aacggtgagg
     1741 cgatggccga aaataaaaat gtaatgctga agacaatacc ggaccatatt cagggcggag
     1801 tgaccggtaa cgccaagctg ctcaacgtag aggggtaaga agggcattac cagactgaag
     1861 gcggcaccgg taagaaaaca gcctagccag gcgacgatca ggtttcgttt ccagtttata
     1921 ggggtgtcat tttcacaggg tgacatagca atccgctgtt ggtgcgccag gcgcggtgaa
     1981 cataagaaga aaagataagc acactaatta tgcgcccgac tcccaggggc gcaatccaga
     2041 gagcttttat cgctaaatca gggggatttg ctgtggtaat gccggatgcc attctgaagc
     2101 atccggcagg ggagatttaa tagcgtgaag gaacgccttc cgggcgtgtt ttaaagcgac
     2161 ggtgtaacca catatactgc tctggtgcca tcatgatgca tttttcgacc actttgttca
     2221 tccacgcggc ggtagtttcg gcatcatcca gtggcggaga acactctggc ggcagcataa
     2281 tcaattgata ccctttgcca tctggcttac ggcgtggaac gaagggcacc agacatgcgc
     2341 cggacatccg tgccagcatc caggttccgg tcgtggtcgc agcctgctca acggcaaata
     2401 acgggacgaa aacgcttgag cgcgggccgt aatcatgatc cggtgcgtac cagaccactt
     2461 cgcctttttt cagggcttta atcatgcctt ttaaatcttt gcggtcgagc atcgatttat
     2521 ttgagcgcaa acggccccag gtttgtagcc agtcaatcag tggattatcg ttcgggcggt
     2581 aaacgccaat ccccggttcc tgcataccaa actgccgcgc acccagctcc agtgtcagaa
     2641 aatggatgcc aactaacagg atgccgcgtt tttgcgcctg cacgtcacga atgtgttcca
     2701 tgccgatcac ttccgtccag cgggcgattc ggcggtccgg ccagaaccac gccatgccgg
     2761 tttccatcag gcccatgcca acggattcga aattcttcac caccatttta cggcgttctt
     2821 gttcgctcat ttccgggaag cacagttcca ggttgcgatg cacaattttt gcgcgtcgtt
     2881 tcataaaacg taacgccagt tttcctaatc cacaaccgag gcggtagata accgggtagg
     2941 gcaattgcac gactaaccaa agtacgccaa tacccaacca ggttaaccaa taacgcggat
     3001 gaagcagtgc ggtggagaac ttgggtagat tcgtcatatc aatcctgttt ttcaacctat
     3061 tcgggcaatt gtatgtattg tcgcattttt tcgcccgcaa ccaaaatttg tggctgaaga
     3121 ctgggcgaaa ttgccgcgct tgtaaataac aaataatttt taatgcgcaa atgtagcgta
     3181 aaatgtgtgg atgttaatta tcgataattg ctatatcatg ccgcggattt ttactttccc
     3241 atctcgcagg aaccgtacac catgccagtg ttacacaacc gcatttccaa cgacgcgcta
     3301 aaagccaaaa tgttggctga gagcgaaccg cgaaccacca tttcgtttta caagtatttc
     3361 cacatcgccg atcctaaggc gacccgtgac gctttatatc agctgtttac cgcgctgaat
     3421 gtttttgggc gagtgtatct ggcgcatgag ggcattaacg cgcaaatcag cgtacctgcg
     3481 agcaatgttg aaacatttcg cgcgcagctc tatgccttcg acccggcttt agagggttta
     3541 cgcctgaata tcgcgttgga tgatgacggg aaatccttct gggtactgcg catgaaggta
     3601 cgtgatcgca ttgttgccga cggtattgac gatcctcact ttgatgccag caatgttggt
     3661 gagtatctgc aagcggcgga agtgaacgcc atgcttgacg atcccgatgc actatttatc
     3721 gacat
//
LOCUS       DAJVUN010000261         3681 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.264, whole genome shotgun sequence.
ACCESSION   DAJVUN010000261 DAJVUN010000000
VERSION     DAJVUN010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.264"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(120..2189)
                     /gene="glyS"
                     /locus_tag="OQQ76_003886"
     CDS             complement(120..2189)
                     /gene="glyS"
                     /locus_tag="OQQ76_003886"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HCS1970191.1"
                     /translation="MSEKTFLVEIGTEELPPKALRSLAESFAANFTVELDNAGLAHGT
                     VQWFAAPRRLTLKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV
                     DQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP
                     VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD
                     YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA
                     LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF
                     NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC
                     ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV
                     RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA
                     VSHFRTLDAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDK
                     LEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRV
                     ADISLLQ"
     gene            complement(2199..3110)
                     /gene="glyQ"
                     /locus_tag="OQQ76_003887"
     CDS             complement(2199..3110)
                     /gene="glyQ"
                     /locus_tag="OQQ76_003887"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HCS1970192.1"
                     /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL
                     KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
                     GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF
                     LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI
                     RTLTKAVAEAYYASREALGFPMCNKDK"
     gene            complement(3205..3504)
                     /locus_tag="OQQ76_003888"
     CDS             complement(3205..3504)
                     /locus_tag="OQQ76_003888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsaB family lipoprotein"
                     /protein_id="HCS1970193.1"
                     /translation="MMMNAFFPAMALMVLVGCSTPSPVQKAQRVKVDPLRSLNMEALC
                     KDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR"
BASE COUNT          849 a         1000 c          949 g          883 t
ORIGIN      
        1 ctcataaaat taatatatga gataatcttt attcagcaga agattattaa aggttgctgt
       61 attatttagc gataataaaa aaagcctgcc agatggcagg ctttttaata acggcgttat
      121 tactgcaaca gcgaaatatc cgcaacgcgc aggaacagtt cgcgcagttt ctccagcatg
      181 gtcagacggt tgagacgcaa ttctttgtca tcaaccatga ccatcacttt atcgaagaaa
      241 gcatcaaccg gctcacgcag ctctgccagt tcgaccagcg catcctggta acgaccttcc
      301 gcaaagtacg gctccagctt gtcacgtagc accacaacct gcatcgccag tttaatttct
      361 tccggctctt tcagggtaga ggcattcacg cggtcgctca gcacttcgtc agatttcgcc
      421 agaatgttag atacacgttt gttcgccgcc gccagtgcag cagctgcatc cagggtacgg
      481 aaatgcgata ccgctttcat acgggcatcg aaatcagccg gacgagtcgg acgacgcgcc
      541 agtaccgcct ggatggtgtc aacggtgtaa ccttcgtcct gataccaggc gcggaagcga
      601 ccgagcataa agtcgataac atcatcaacc acgttggcgt tagtcagctt atcgccatac
      661 agacgcactg cttcttcggt cagcgtttgc agatcaaggt tgaggttctt ctcaacgata
      721 attcgcagca cgccaagtgc ggcacgacgc agcgcaaacg ggtctttgtc gcctttcgga
      781 tgctgaccga taccgaagat acccgccaga gtatccatct tatcagcaat cgccagcgca
      841 caagctaccg ggttggacgg caggtcatca ccggcaaagc gcggctgata ctgctcattc
      901 agcgcgacgg ctacgtcttc cgcttcgcca tcgtgacgcg cgtagtgcat ccccataacg
      961 ccttgggtgt cggtgaactc gaagaccatg ttggtcatca ggtcacactt agacagcagg
     1021 cccgcacggg ttgcgtggtt aacgtcagcg ccaatctgtt cagcaatcca gccagccagc
     1081 gcctggatgc ggtcagtttt gtcacgcagc gtacccagct gttgctggaa cagcacggtt
     1141 tgcaggcgcg gcaggttatc ttccagacgt tttttacggt cggtattgaa gaagaactcg
     1201 gcatccgcca gacgtggacg aacgactttc tcgttaccag agataatttg ctgcggatct
     1261 ttcgattcga tgttggcaac gaagatgaag ttcggcagca gtttgccatc gttcgcatac
     1321 accgggaagt atttctggtc acctttcatg gtgtaaacca gggcttcagc cggcaccgcg
     1381 aggaatttct cttcgaattt tgcggtcaga acgaccggcc actccaccag cgaagccact
     1441 tcttccagca ggctttcgct taagtcagcg ttaccgccaa tcttacgcgc tgcttcttcg
     1501 gcatcggctt taatcttcgc tttacgttct tcgtaatcgg cgatgacttt cccgcgctca
     1561 cgcagaattt ccggatactg atcggcgttg tcgatggtga attccggttc gcccataaag
     1621 cggtggccgc gaatcacgcg atcggactga atgcccagaa tagttgccgg aatgactttg
     1681 tcgcccagca gcagggtcac ggtgtgcacc ggacgcacga agtgcacgtc gcttgcgccc
     1741 caacgcatca gtttcgggat cggcagtttc gccagagaag tcgcaaccat attcggcagc
     1801 agtgcttcgg tgctttcgcc cttcacatgg gcgcgataca gcagccattc gcctttatcg
     1861 gtagtcagac gctcagcctg gtcaacggta ataccgcaac cacgcgccca accttctgcc
     1921 gctttgctcg gtttgccttc agcgtcgaac gcctgggcaa tcgccgggcc gcgtttttcg
     1981 atttcacgat ccggttgcgc ttccgccagg ttagctactt tcagcgtcag acgacgcgga
     2041 gcagcaaacc attgaacggt gccgtgtgcg aggccagcgt tatccagctc cacagtaaaa
     2101 ttcgcagcaa aggactcagc caggctgcgc agtgcttttg gtggcagctc ttcagtgccg
     2161 atttccacca gaaaagtttt ctcagacata gccgcctctt acttatcttt gttgcacatc
     2221 gggaagccga gggcttcacg ggaagcgtag tatgcttctg ccactgcttt ggtcagggtg
     2281 cgaatgcgca gaatgtagcg ctgacgctcg gtgacggaga tggctttacg cgcatccagc
     2341 aggttgaagc tgtgggcggc tttcagaata cgctcgtagg ctggcagcgg cagcggattt
     2401 tccagcgcca gcagctgctg cgcttctttc tcgtactgct caaagcaggt gaacaggaag
     2461 tccacatccg cgtattcgaa gttgtaagtg gactgctcca cttcgttctg atggaacacg
     2521 tcgccgtagg tggttttacc cagcgggccg tcgctccaga ccaggtcgta aacgctgtct
     2581 acgccctgaa tgtacatggc cagacgttcc agaccgtagg tgatctcgcc ggtaaccggt
     2641 ttacactcca gaccaccaac ctgctggaag taagtgaact gcgtcacttc catgccgttt
     2701 agccacactt cccagcccag tccccaggca cccagagtcg ggttttccca gttatcttcc
     2761 acgaaacgga tgtcgtgaat agtcgggtcc atgcccagct ctttcagaga accgaggtac
     2821 agctcctgaa tattgtccgg cgatggctta atgaccacct ggaactgata gtagtgctgt
     2881 aaacggttgg ggttttcgcc gtagcgacca tcggtcgggc gacgagaagg ctgaacataa
     2941 gcagccgcca tcggttctgg ccccagcgcg cgcagacagg tcattgggtg agaggttccc
     3001 gcgccgactt ccatgtccaa tggttgaaca atggtgcagc cctggcgagc ccagtaatcc
     3061 tgtaaggtca ggatcaagcc ctggaaggtc ctggtatcaa acttttgcat attatttcgt
     3121 gctggatacg tgtggattta aaggaaggga tcagtatacc cgctggatgg aagatataca
     3181 gtacgaaacg ggaaaaagca gggcttaacg catggaaaga tgcaaaaaat ggccatctgc
     3241 gtcaaaagaa cagacaaact gctctttacg gaaggtataa ccgcgcattt catagcttcc
     3301 ctggaactgt tcgaaggcgg tgacgtcgat tttttgctcg ccggtgttat aacgttttgc
     3361 cgcctgatcc ttgcataacg cttccatatt caacgaacgc agaggatcaa cctttacccg
     3421 ttgtgctttc tgcacgggtg acggtgtaga acaacccact agcaccataa gcgccattgc
     3481 cggaaagaaa gcgttcatca tcattaaatt accgtctggt ttgcaggtga gtcttattat
     3541 ttatatcggt atagtggctg atatcttacg aatttcctta agcctctata agctgtagtg
     3601 ataaaactca gattattcca gtgcgccaac caaatgattt atcggtcaga ctttttttaa
     3661 ccagatacag agacacagat g
//
LOCUS       DAJVUN010000262         3676 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.265, whole genome shotgun sequence.
ACCESSION   DAJVUN010000262 DAJVUN010000000
VERSION     DAJVUN010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3676
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.265"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..267)
                     /gene="mcbR"
                     /locus_tag="OQQ76_003889"
     CDS             complement(<1..267)
                     /gene="mcbR"
                     /locus_tag="OQQ76_003889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415967.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid/biofilm transcriptional regulator
                     McbR"
                     /protein_id="HCS1970194.1"
                     /translation="MPGMGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQL
                     GMSITPVREALLRLVSVNALSVAPAQAFTVPEVGKRQLDEINRIR"
     gene            complement(465..1502)
                     /gene="curA"
                     /locus_tag="OQQ76_003890"
     CDS             complement(465..1502)
                     /gene="curA"
                     /locus_tag="OQQ76_003890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415966.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent curcumin/dihydrocurcumin
                     reductase"
                     /protein_id="HCS1970195.1"
                     /translation="MGQQKQRNRRWVLASRPHGAPVPENFRLEEYDVATPGEGQVLLR
                     TVYLSLDPYMRGRMSDEPSYSPPVDIGGVMIGGTVSHVVESNHPDYQPGDWVLGYSGW
                     QDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
                     PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKG
                     IDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKR
                     IRLQGFIIAQDYGHRIHEFQKEMGQWVKEDKIHYHEDITDGLENAPQTFIGLLKGKNF
                     GKVVIRVAGDD"
     gene            1683..2201
                     /gene="mddA"
                     /locus_tag="OQQ76_003891"
     CDS             1683..2201
                     /gene="mddA"
                     /locus_tag="OQQ76_003891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine sulfoximine/L-methionine sulfone
                     acetyltransferase"
                     /protein_id="HCS1970196.1"
                     /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE
                     ARTIAGYPVLVSEEDGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS
                     RLIDEARDSGKHVMVAGIESQNQASLHLHHSLGFVVTAQMPQVGTKFGRWLDLTFMQL
                     QLDERTEPDAIG"
     gene            2198..2647
                     /locus_tag="OQQ76_003892"
     CDS             2198..2647
                     /locus_tag="OQQ76_003892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1970197.1"
                     /translation="MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLV
                     GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV
                     LVASQLIGGLMLDIFRSHGVPLRALFSPICGAILLVVGAWLVARRSF"
     gene            complement(2648..2881)
                     /locus_tag="OQQ76_003893"
     CDS             complement(2648..2881)
                     /locus_tag="OQQ76_003893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcY family protein"
                     /protein_id="HCS1970198.1"
                     /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ
                     QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL"
     gene            complement(2967..3101)
                     /locus_tag="OQQ76_003894"
     CDS             complement(2967..3101)
                     /locus_tag="OQQ76_003894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GhoT/OrtT family toxin"
                     /protein_id="HCS1970199.1"
                     /translation="MAAIAFLITWFLSHDKKRIRFLSAFLVGATWPMSFPVALLFSLF
                     "
     gene            3336..3431
                     /gene="yncL"
                     /locus_tag="OQQ76_003895"
     CDS             3336..3431
                     /gene="yncL"
                     /locus_tag="OQQ76_003895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response membrane protein YncL"
                     /protein_id="HCS1970200.1"
                     /translation="MNVSSRTVVLINVFAAVGLFTLISMRFGWFI"
BASE COUNT          901 a          930 c          841 g         1004 t
ORIGIN      
        1 gcggatccga ttgatttcgt ctaattgacg tttccccact tccggaactg taaatgcttg
       61 tgcaggtgcg acagaaagcg cattcaccga aaccagacgt aataatgctt cacgcacagg
      121 tgtaatactc atacctaatt gctccgccag atttttagta atcaggcgtg cgccaggttt
      181 taatgcgcca atactaagct gatgtttcag gtcgttctca acctgcagag tcaaactgac
      241 atgtttcatt tttcccattc caggcatttt aattccttcg cgtgttttct gtccaaccct
      301 gcctgcacgg cagaaggagt tcacctggtg tattaaagtg aataatcata aaccacccac
      361 ctttgttgtt attagcagca gaacaatgac gtggttagtt aattaaagct gaaaataagc
      421 tttttgcctg gatttttatg gcggcttacg ccgccgttga aactttaatc atcacccgcg
      481 acgcggatca ccactttgcc gaagttttta cccttcagca ggccgataaa cgtctgtggc
      541 gcattctcta aaccatcagt aatatcttcg tggtagtgga ttttatcctc tttcacccat
      601 tgccccatct ccttctgaaa ctcatggatg cggtgaccat aatcctgagc gataataaac
      661 ccttgcaagc gaatacgttt tttcagcacc gttgccatca acaggggtaa acgatccgga
      721 ccgggtggta gctctgtagc gttatagctg ctcactaagc cacaaacggg aatgcgcgca
      781 gatgtattaa gtaatggtag cactgcatca aataccttac cgcccacgtt ttcataatag
      841 atatcaatac cttttgggca cgctttcacc agttgttcgg caaaatcacc cgcgtggtga
      901 tcaagacaaa catcgaagcc cagcacctcg atagcatggc ggcatttttc cgcgccaccg
      961 gcacccccca ccaccctgca acctttaagt ttgccgattt gccccaccgt tgctcccaca
     1021 ggacctgtcg ccgcagctac caccaacgtt tcgccctctt taggctgacc gatatccagc
     1081 agccccatat aagcggtaaa gcctggcatc cccagcacac ccagcgacca cgatggattt
     1141 tgcggatgat cgccaagttt caccagatca tcaccactgg atatgtcata gtcctgccat
     1201 ccactgtagc ccagcaccca gtcgccaggc tgataatcag gatgattcga ctccacaaca
     1261 tggctcaccg tgccgccgat catcacgccg ccaatatcaa caggcggtga ataagatggc
     1321 tcatcgctca tacgtccacg catatacggg tccagggaca aataaactgt gcgcagtaac
     1381 acctgtcctt cacccggtgt ggcgacatca tattcttcaa gacggaaatt ctccggaacc
     1441 ggtgcgccat gtggacgcga ggccagaacc caacgtcgat tacgctgctt ttgttgcccc
     1501 ataatgctct cctgtgcttt tggcatgaat ccatcaatag tagcaggctc acgggattgg
     1561 ttttgtttgc agccgtcaca tcccctctgc aacacgcaat aatttcatcg aggaatccgt
     1621 tgcttcgggc tgttttcgat agtattgata acatcatcat cattatttta tcgaggccag
     1681 acatgtccat ccgttttgcc cgcaaagccg attgtgctgc cattgcggaa atttataacc
     1741 acgccgtgtt gtatacggcg gctatctgga atgaccaaac ggttgatgca gataaccgca
     1801 ttgcctggtt tgaagcgcgg accatagcag gttatccggt gctggtaagt gaagaagatg
     1861 gcgtagtgac gggatatgcc tcgtttggcg actggcgtag tttcgatggt tttcgccata
     1921 ccgtggaaca ttcggtttat gtccatcccg atcatcaggg caaaggtctg gggcgtaaat
     1981 tgttaagccg attgattgat gaagcgcggg atagcgggaa gcatgtcatg gtcgccggga
     2041 tcgaatcgca aaatcaggcc tcgctgcatc tgcaccattc gctgggattt gtcgtcaccg
     2101 cacaaatgcc gcaggtgggc actaaatttg ggcgctggct ggatctgaca tttatgcagt
     2161 tgcaactcga cgaacgcact gaaccggacg cgattggatg aatcagtcgc tcacccttgc
     2221 ttttttgatt gccgccggaa ttggtctggt agtccagaac acgctgatgg tgcgcatcac
     2281 ccagacctcc tctaccattc tcatcgccat gttgctgaac tcactggtgg ggattgtgct
     2341 ctttgtttct attttatggt ttaaacaagg catggcgggg tttggcgaac tggtgtccag
     2401 cgtgcgctgg tggacactta tacccggctt gctgggatcg ttttttgtct tcgccagtat
     2461 cagcggatat cagaatgtgg gagcggcgac aactattgca gtactggtcg ccagccagct
     2521 aattggcggt ctgatgctgg atatcttccg cagtcatggc gtaccactac gggcgttgtt
     2581 cagcccaatt tgtggcgcaa ttttacttgt ggttggcgcc tggttggtag ccagacgctc
     2641 attttaatca gaggatggtg ccgcctttgg ttaactgttc gtggcgcgct tccatatctt
     2701 ctttatgctt gcgaccgtga tgagcaatag cggtgcgcaa acgctgctgc tgggtgtagc
     2761 gatcttcccg acttaactcc gcgtcatcgc tcagggcgat taataattcg ttcatatggg
     2821 caatgacgct ctcttcaatc gcggcatcca cgcgcgcgat gacttcatcc agatgcgaca
     2881 tactttctcc ttaaccactt gtgaaattta tcgattcatc caaatgatat aagtctgcgt
     2941 ggtgccgtca agccagtgag taagatttaa aacagtgaaa acaacagcgc caccgggaaa
     3001 ctcatcggcc atgttgcccc caccagaaag gcgcttaaga aacggatgcg tttcttatcg
     3061 tgagaaagaa accaggtgat aagaaatgcg attgctgcca taaccgcata aaaaaacaag
     3121 catatgttga tagagagaca tgtacgggcg tccagccaga tgaataaaac gcgcgcaaat
     3181 atgcgtcatt ttttgacgtg catcaagttt tttcaccagt ttgagaaaaa atcatcaaac
     3241 agcaacttgc ccttatccat cttcagaatg agtattattg cggattttct taatccgtac
     3301 tatacccata ggggcaatga taaaaggtgg caaaaatgaa tgtttccagt agaactgtag
     3361 tactgataaa tgtctttgct gctgttggtt tgtttactct tatctctatg agatttggct
     3421 ggtttatttg atgtagtgat tttgcacgca gcacgtactg tcagagaaat caactctctg
     3481 acagtacgca agatcttctc atactctcca ggtttacaac attatcctta atatttactt
     3541 ctttttgctg gcatctacat tgaaatgagt agaaaacatc cccctactgt cgtctataca
     3601 aacagcttac tgattcaaac ggaatcttgt tttcacattt ttctatcatg aatactttat
     3661 acgcgcgaga gtctat
//
LOCUS       DAJVUN010000263         3624 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.266, whole genome shotgun sequence.
ACCESSION   DAJVUN010000263 DAJVUN010000000
VERSION     DAJVUN010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3624
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.266"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..809
                     /locus_tag="OQQ76_003896"
     CDS             <1..809
                     /locus_tag="OQQ76_003896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HCS1970201.1"
                     /translation="RFGYAANQIRRDRPLTHEELIRHVPSIFGEDRHTSRSERYAYIP
                     TITVLENLQREGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIILLNSH
                     DGTSSYQMLPGYFRFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFDRIEE
                     KRDAMQSLVLPPPARQALAQAALTYRNGDEHQPVTTADILTPRRREDYGKDLWSAYQT
                     IQENMLKGGISGRSAKGKRIHTRAIHSIDTDIKLNRALWVMAETMLESLR"
     gene            891..1370
                     /locus_tag="OQQ76_003897"
     CDS             891..1370
                     /locus_tag="OQQ76_003897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein"
                     /protein_id="HCS1970202.1"
                     /translation="MKTVSQNTLTIYSATTPENNPPQLVASLVPDEQRINFWPQHFGL
                     IPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMN
                     GNRAEMSPEAAGIAACLMTYSHHACRTENYAMTVHYYRLRDYALQHPECSAIMRIID"
     gene            1386..1862
                     /locus_tag="OQQ76_003898"
     CDS             1386..1862
                     /locus_tag="OQQ76_003898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RadC family protein"
                     /protein_id="HCS1970203.1"
                     /translation="MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVTFTSTRAAR
                     EWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPWEVIKRALYHNAAA
                     VVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL"
     gene            1925..2146
                     /locus_tag="OQQ76_003899"
     CDS             1925..2146
                     /locus_tag="OQQ76_003899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF987 domain-containing protein"
                     /protein_id="HCS1970204.1"
                     /translation="MKIITRGEAMRIHQQHPTSRLFPFCTGKYRWHGSAEAYTGREVQ
                     DIPGVLAVFAERRKDSFGPYVRLMSVTLN"
     gene            2220..2588
                     /gene="cbtA"
                     /locus_tag="OQQ76_003900"
     CDS             2220..2588
                     /gene="cbtA"
                     /locus_tag="OQQ76_003900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system toxin CbtA"
                     /protein_id="HCS1970205.1"
                     /translation="MSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYL
                     ADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKAD
                     TLSSCGYVYLAVYPTPEMKN"
     gene            2677..3051
                     /gene="cbtA"
                     /locus_tag="OQQ76_003901"
     CDS             2677..3051
                     /gene="cbtA"
                     /locus_tag="OQQ76_003901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system toxin CbtA"
                     /protein_id="HCS1970206.1"
                     /translation="MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFA
                     DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSACTRSQLINSIDILRARRATG
                     LMTRDNYRTVNNITLGKYPEAK"
     gene            3048..3242
                     /locus_tag="OQQ76_003902"
     CDS             3048..3242
                     /locus_tag="OQQ76_003902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310834.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970207.1"
                     /translation="MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRV
                     VDDRDSTETPATYASPHQLL"
     gene            3255..3368
                     /locus_tag="OQQ76_003903"
     CDS             3255..3368
                     /locus_tag="OQQ76_003903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001161660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF957 domain-containing protein"
                     /protein_id="HCS1970208.1"
                     /translation="MQGIVPLTTETALLSCIKQAREDVLTLRHLQLLHQNR"
BASE COUNT          883 a          989 c          928 g          824 t
ORIGIN      
        1 gtcgttttgg ttatgctgca aaccagatac gccgtgaccg tccgctgaca catgaagaac
       61 tgatacgcca tgtacccagt atttttgggg aagaccggca cacctcccgc agtgaacggt
      121 atgcgtacat tcccaccatt accgtcctgg aaaatctgca gcgggaaggc tttcagccgt
      181 tcttcgcctg ccagacccgt gtgcgcgacc cgggccgccg gggatacaca aaacacatgc
      241 tgcgtctgcg gcgggccgga gagataaacg gagaacatgt ccctgaaatt attctgctca
      301 actctcatga cggtacctcc agctaccaga tgctgccggg ttacttcagg ttcgtctgcc
      361 agaacgggtg cgtctgtggc cagtctctgg gggaagtgcg tgttccacac cggggaaatg
      421 tagtggagaa agttatcgaa ggggcttacg aggtggtggg cgtgtttgac cggatagagg
      481 agaagcgtga tgccatgcag tcgctggtcc tgccgccacc ggcacgccag gcgctggcac
      541 aggcggcact gacttaccgt aatggtgacg aacatcagcc cgtcaccacc gccgacattc
      601 tgacgccgcg acgccgggag gattacggta aggacctgtg gagcgcatat cagaccatcc
      661 aggagaatat gctgaaaggc gggatttccg gtcgcagtgc aaaaggaaaa cgtatccata
      721 cccgggccat tcacagcatt gataccgaca ttaagctcaa tcgcgcattg tgggtgatgg
      781 cagaaacgat gctggagagc ctgcgctgat gccgtttccc tgagtgaggg aatcattcag
      841 ctttcgttcc tgaaaaacac acatttattt gttatttaag gagttatctc atgaaaaccg
      901 tttctcagaa taccctcaca atttattcag ctacaacacc agagaataat ccgcctcagt
      961 tggttgccag cctcgtccct gatgaacagc gcatcaactt ctggccgcag cattttggcc
     1021 tcattccaca gtgggtgacc ctggagcccc gtgtcttcgg ctggatggac cgtctgtgcg
     1081 aagactactg cggtggtatc tggaatctgt acaccctgaa caacggcggg gcatttatgg
     1141 cacccgaacc ggatgacgat gatgacgaaa catgggtact gttcaatgcc atgaacggta
     1201 accgcgcaga aatgagcccg gaagccgccg gtattgccgc ctgtctgatg acgtacagtc
     1261 atcatgcctg tcgtacggag aattatgcca tgacggtcca ttattaccgg ttgcgggatt
     1321 acgccctgca gcatccggaa tgcagcgcca ttatgcgcat catcgactga atggagagaa
     1381 gcacaatgca acaactttcc tttctgcccg gagagatgac tcccggcgag cgcagcctca
     1441 ttcaacgggc cctgaaaacc ctggaccgcc atcttcatga acccggcgtg accttcacct
     1501 ccacccgtgc agcacgggaa tggctgattc tgaacatggc gggactggag cgtgaagaat
     1561 tccgggtgct gtatctgaac aaccagaatc agctgattgc cggtgaaacc ctcttcaccg
     1621 gcaccatcaa ccgcacggaa gtccatccct gggaagtgat taaacgcgcc ctgtaccaca
     1681 atgccgctgc cgtggtactg gcacacaatc acccgtccgg tgaagtcaca cccagtaagg
     1741 cagaccggct tatcaccgaa cgtctggtac aggcactggg cctggtggat atccgggtgc
     1801 cggaccatct gatagtcggt ggcaaccagg ttttctcctt tgccgaacat ggtctgcttt
     1861 aacccttcac aaccacatca cacctgtttt cacttttatc ttctgtcttc agaggtatcc
     1921 cattatgaaa attatcaccc gtggtgaagc catgcgtatt caccaacaac atccgacatc
     1981 ccgtcttttt ccgttctgta ccggtaaata ccgctggcac ggcagtgctg aagcgtatac
     2041 cggtcgtgaa gtgcaggata ttcccggtgt gctggccgtg tttgctgaac gccgtaagga
     2101 cagttttggt ccgtatgtcc ggctgatgag cgtcaccctg aactgagtgg gaattctgat
     2161 gagcagaatt atcgccacta ccggaccatt cttagccgat tttctgtaag gattttatcg
     2221 tgtcagacac actccccggg acaacacttc ccgacgacaa tcacgaccgc ccctggtggg
     2281 ggctgccctg caccgtgacg ccctgtttcg gggcacgtct ggtgcaggag ggtaaccggt
     2341 tgcattacct tgccgaccgc gccggtatca gaggcctgtt cagcgatgca gatgcgtacc
     2401 acctggacca ggcctttccg ctgctgatga aacaactgga actcatgctc accagcggtg
     2461 aactgaatcc ccgccatcag cataccgtca cgctgtatgc aaaagggctg acctgcaaag
     2521 ccgataccct cagcagttgt ggttacgttt atctggctgt ttatccgacg cccgaaatga
     2581 aaaattaact ctccagaata gccttctgct acggcctggt gttttcacca cgccactttt
     2641 ccatttttat atctgcatat caggaaaatc ttcagtatga aaacattacc tgtattaccc
     2701 gggcaggcgg ccagttctcg cccgtctcct gttgaaatct ggcagatact gctgtcccga
     2761 ctgctggacc agcactatgg cctcacactg aatgacacac cttttgccga tgaacgtgtg
     2821 attgagcagc atattgaggc aggcatttca ctgtgtgatg cggtgaactt tctcgtggaa
     2881 aaatacgcgc tggtgcgtac cgaccagccg ggattcagcg cctgtacccg ctctcagtta
     2941 ataaacagca tcgatatcct ccgggctcgc agggcgaccg gcctgatgac ccgcgacaat
     3001 tacagaacgg taaataacat taccctgggt aagtatccgg aggcgaaatg atgacactgg
     3061 aagccgacag cgttaacgta caggcgctgg atatgggaca cattgtcgtt gacattgatg
     3121 gtgttaatat cactgaactg attaataagg ccgctgaaaa cggttattca ctccgcgtgg
     3181 tggatgaccg tgactctacc gaaacaccgg caacttatgc cagccctcac cagttgctgt
     3241 aagacaatgc agtgatacag ggtatagtgc cattaaccac agaaacagca ctgttgtcct
     3301 gtattaagca ggcaagagaa gatgtcctta ccctgcgcca tctgcagctt ctgcaccaga
     3361 accggtgaat ctcactcaac aggcttcatt tctcctgacg ccagcctgaa tacagctggc
     3421 gttttcattt ataaacagaa aggaaaaccg ataataatgg aatggacgcc ccgaccatga
     3481 agcaacggta ggatattact gataaacctt ccagtggagg tgcgttatgg ccgttttaac
     3541 gattagcatt gacctgacaa aaaatgaatt ccaaatccac ggtctgggta ggaacagaaa
     3601 aatctaagct cagaaaacgg atta
//
LOCUS       DAJVUN010000264         3623 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.267, whole genome shotgun sequence.
ACCESSION   DAJVUN010000264 DAJVUN010000000
VERSION     DAJVUN010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.267"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            54..644
                     /locus_tag="OQQ76_003904"
     CDS             54..644
                     /locus_tag="OQQ76_003904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HCS1970209.1"
                     /translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
                     AERILSSGEYWQRQKTLLTEREVSFMKGLFRIVDMKRWYLCPQVRVADIVQLNGNIRP
                     RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
                     AGIPLLRSHDARKLLQMTGEWLNTTGADQQSPEHRS"
     gene            884..1144
                     /gene="repA"
                     /locus_tag="OQQ76_003905"
     CDS             884..1144
                     /gene="repA"
                     /locus_tag="OQQ76_003905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication regulatory protein RepA"
                     /protein_id="HCS1970210.1"
                     /translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
                     KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
     gene            1368..1442
                     /gene="tap"
                     /locus_tag="OQQ76_003906"
     CDS             1368..1442
                     /gene="tap"
                     /locus_tag="OQQ76_003906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001370046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA leader peptide Tap"
                     /protein_id="HCS1970211.1"
                     /translation="MPGKVQDFFLCSLLLRIVSAGWCD"
     gene            1435..2292
                     /gene="repA"
                     /locus_tag="OQQ76_003907"
     CDS             1435..2292
                     /gene="repA"
                     /locus_tag="OQQ76_003907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="incFII family plasmid replication initiator
                     RepA"
                     /protein_id="HCS1970212.1"
                     /translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
                     FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
                     LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
                     SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
                     RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
                     YSRLATASP"
     gene            complement(3276..>3623)
                     /locus_tag="OQQ76_003908"
     CDS             complement(3276..>3623)
                     /locus_tag="OQQ76_003908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000487120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HCS1970213.1"
                     /translation="LVFQFPIREQAAAFLGVVPVEKYSGTSVRGCPKLSKIGPPEIRA
                     KLYLASLCGLRFNPLMKAMYERLCLRGKAKMCAIGALMRKLVHWCYGVLKTQKPFDVG
                     YLSSYARSACKAA"
BASE COUNT          955 a          931 c          895 g          842 t
ORIGIN      
        1 aaatatgtaa ggtaataatt cagcaataat taattgccag gagcagataa ataatgaagt
       61 tgattatttt tattctcatt gttctgatta ttgcagcgct acttatccgg attatcctca
      121 gaagtgtaaa tcagcattct cctttgctga tgcaattgca tgcggcaggt atacggaccg
      181 gtgatgcaga gcgaatactg tccagcggtg aatactggca acgtcagaag acgctgctga
      241 cagaaaggga agtcagtttt atgaaaggac tgttcagaat tgtggatatg aagcggtggt
      301 atctgtgtcc gcaggtacgg gtcgcggata tcgtccagct gaacgggaat atccggccac
      361 gatcacgcca gtggtggcag ttattcagga tggtgtctca gtggcatgtt gatgtggtta
      421 tcgttgagct gcgttcgttc agtattgttg cagcagtaga gctggatgat gccagccatt
      481 tacgaccgga acgcagacgc cgggatattc ttctggaaga ggttctgagg caggctggta
      541 ttccgttgct cagaagccac gatgccagaa aactgctgca gatgaccgga gaatggctga
      601 atacaacagg ggctgatcag cagtcaccgg aacatcgtag ctgacgcctt cgcgttgctc
      661 agttgtccaa ccccggaaac gggaaaaagc aagttttcct cgctccctgc gtttccataa
      721 ctgaaaacca tactatttca cagtttaaat cacattaaac gacagtaatc cccgttgatt
      781 tgtgcgccaa cacagatctt cgccacaatt ctcaagtcgc tgatttcaaa aaactgtagt
      841 atcctctgcg aaacgatccc tgtttgagta ttgaggaggc gagatgtcgc agacagaaaa
      901 tgcagtgact tcctcattga gtcaaaagcg gtttgtgcgc agaggtaagc ctatgactga
      961 ctctgagaaa caaatggccg ctgttgcaag aaaacgtctt acacacaaag agataaaagt
     1021 ttttgtcaaa aatcctctga aagatctcat ggttgagtac tgcgagagag aggggataac
     1081 acaggctcag ttcgttgaga aaatcatcaa agatgaactg cagagactgg atatactaaa
     1141 gtaaagactt tactttgtgg cgtagcatgc tagattactg atcgtttaag gaattttatg
     1201 gctggccacg ccataaggtg gcagggaact ggttctgatg tagatgtaca ggagccagaa
     1261 aagcaaaaac cccgataatc ttctttaact ttggcgagtc agaaagatta ccggggccca
     1321 cttaaaccgt atagccaaca atcaagctat gcggggagta tagttatatg cccggaaaag
     1381 ttcaagactt ctttctgtgc tcgctccttc tgcgcattgt aagtgcagga tggtgtgact
     1441 gatcttcaac aaacttatta ccgccaggta aagaacccga atccggtgtt cacaccccgt
     1501 gaaggtgccc ggacgcttcc gttctgcggg aaactgatgg aaaaggcggt gggcttcacc
     1561 tcccgttttg atttcgccat tcatgtggca catgcccgtt cgcttggtct gcgtcggcgc
     1621 atgccaccgg tactacgtcg ccgggccatt gatgcgctgc tgcaggggct gtgttttcac
     1681 tatgacccac tggccaaccg cgtccagtgt tccatcacca cgctggccat tgagtgcgga
     1741 ctggcgacgg agtctgctgc cggaaaactc tccatcaccc gggccacccg ggccctgacg
     1801 ttccttgcag agctgggact gattacctac cagacggaat atgacccgct tatcgggtgc
     1861 tacattccga ccgatatcac gttcacatct gcactgtttg ctgccctcga tgtatcagag
     1921 gaggcagtgg ccgccgcgcg ccgcagtcgt gtggaatggg aaaacagaca gcgcaaaaag
     1981 caggggctgg ataccctggg tatggatgaa ctgatggcga aagcctggcg ttttgttcgt
     2041 gagcgtttcc gcagttacca gacagagctt aagtcccgtg gaatgaagcg tgcccgtgcg
     2101 cgtcgtgatg cggacaggca gcgtcaggat attgtcaccc tggtgaaacg gcaactgacg
     2161 cgtgaaatct cggaagggcg cttcactgcc agtcgtgagg cggtaaaacg tgaagtggag
     2221 cgtcgtgtga aggagcgcat gattctgtca cgtaaccgta attacagccg gctggccaca
     2281 gcttccccct gaaagtgacc tcctcagaat aatccggcac gcgccggagg cattcgcacg
     2341 cctgaagccc gccagtgcac aaaaaatcag cgctacatac aaaaaacaac ctcatcatcc
     2401 accttctggt gcatccggtc ccccctgttt ttgatacaaa acacgcctca cagacgggga
     2461 attttgctta tccacattaa actgcaaggg acttcaccat aaggttacaa ccgttcacgt
     2521 cataaagcgc cagccgtcag tcctacaggg tgcaatgtat cttttaaaca cctgtttata
     2581 tctcctttaa actacttaat tacattcatt taaaaagaaa acctgttcac tgcctgtcct
     2641 gtggacagac agatatgcac ctcccaccgc aagcggcggg ccccaaccga agccggttta
     2701 gttacaacat gcaaacataa acccctaaaa aacccaagtc cgacgcagaa ctgaaaccac
     2761 aaagcccctc cctcataact gaaaagcggc cccgccccgg ccctaagggc cggaacagag
     2821 tcgcttttaa ccatgaatgt tgtaactaca ttatcatcgc tgtcagtcct ctggctggac
     2881 gtatcgagta cacgctcata agcggccctc acggcccgct aacgcgaaga tacgccccga
     2941 ctgcggataa acccttatcg ggctccgacc gcgcacagaa gctctgtcat ggctaaaaac
     3001 gggtatggct tggaagctac cgtgttctgt caagaaaaat cgcttgaact ccgacataca
     3061 gccccctaag tactgccagc aagctgtcag cactaagtcc ccgatacagc gcggcgtagc
     3121 cgcgctaacg gggttaaaag ggcttaccta tacttcatca tcgctgaaag cccgcatggc
     3181 ctcgcagggc agggatggga taggtgaaac ctatcaatac gtaccggctt acgccgggct
     3241 tcggcggtgt tactcctgta ccatatgtaa ctacatcatg ccgccttaca tgcgctacgc
     3301 gcatatgaag acaaatagcc cacatcaaac ggtttttggg tcttcagtac gccatagcac
     3361 cagtgcacga gttttctcat cagcgcacca atggcacaca ttttggcctt acctctcagg
     3421 cataatcgct catacatcgc tttcatcaat gggttaaatc tcagaccaca caacgaagcc
     3481 agatacagtt tcgcccggat ttccggcgga ccaatttttg acagtttcgg acaccctctg
     3541 accgaggtgc cggaatattt ttcaacggga acgacaccta aaaatgcagc cgcctgttca
     3601 cgtatgggaa attgaaaaac taa
//
LOCUS       DAJVUN010000265         3619 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.268, whole genome shotgun sequence.
ACCESSION   DAJVUN010000265 DAJVUN010000000
VERSION     DAJVUN010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.268"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            124..381
                     /locus_tag="OQQ76_003909"
     CDS             124..381
                     /locus_tag="OQQ76_003909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2534 family protein"
                     /protein_id="HCS1970214.1"
                     /translation="MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIP
                     LSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ"
     gene            complement(443..1381)
                     /gene="uspE"
                     /locus_tag="OQQ76_003910"
     CDS             complement(443..1381)
                     /gene="uspE"
                     /locus_tag="OQQ76_003910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspE"
                     /protein_id="HCS1970215.1"
                     /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF
                     SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQ
                     EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV
                     NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYN
                     DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI
                     SAAFLGNTAEQVIDHLRCDLLVIKPDQYQTPVELDD"
     gene            complement(1533..2285)
                     /gene="fnr"
                     /locus_tag="OQQ76_003911"
     CDS             complement(1533..2285)
                     /gene="fnr"
                     /locus_tag="OQQ76_003911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate/nitrate reduction transcriptional
                     regulator Fnr"
                     /protein_id="HCS1970216.1"
                     /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN
                     IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD
                     AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL
                     LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF
                     QKSGMLAVKGKYITIENNDALAQLAGHTRNVA"
     gene            complement(2480..2995)
                     /gene="ogt"
                     /locus_tag="OQQ76_003912"
     CDS             complement(2480..2995)
                     /gene="ogt"
                     /locus_tag="OQQ76_003912"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HCS1970217.1"
                     /translation="MLRLLEEKIATQLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI
                     HYRKEGYERISATNPGGLSDKLSDYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC
                     GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE
                     WLLRHEGYLLL"
     gene            complement(3006..>3619)
                     /locus_tag="OQQ76_003913"
     CDS             complement(3006..>3619)
                     /locus_tag="OQQ76_003913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AbgT family transporter"
                     /protein_id="HCS1970218.1"
                     /translation="PLIILFFFVVSLAYGIATRTIRHQADLPHLMIEPMKEMAGFIVM
                     VFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGSA
                     IWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPVSPFVPLFPGFLQRYKPDA
                     KLGTYYSLVLPYPLIFLVVWLLMLLAWYLVGLPIGPGIYPRLS"
BASE COUNT          965 a          861 c          880 g          913 t
ORIGIN      
        1 actaatcaat gcgttgattg taaatccagc taagaggtga ggttttcaga gcagacaacg
       61 gtgaaatgtc atggtattgt tacgtttagg taacgagaaa tttgtctgca caaggattac
      121 atcatgatta tggcgaaact gaagtcagcg aaagggaaga aatttctctt tggtttgttg
      181 gcggttttca ttattgcggc gtcggttgtg actcgcgcga ctatcggcgg cgttatagaa
      241 cagtacaata ttccgctgtc tgagtggacg acatcaatgt atgtgattca gtcatcgatg
      301 atttttgttt atagcctggt ctttactgtg ttgctggcaa tcccgttggg aatttatttc
      361 cttggcggcg aagagcagta agtaaaaaat aggcccgata actcgggcct tgtcagttat
      421 tgaagagtcg ttaatcgtct tcttagtcat ccagttcaac gggtgtctga tactggtcag
      481 gtttaatgac caacagatcg cagcgaagat gatcaatcac ctgttccgcc gtgttgccga
      541 ggaatgctgc tgaaataccg gtgcgtccta ccgtgcccag aaccacaatc cccgcctgta
      601 agtgctccgc caaatcagga ataacctctt cgggcagacc tttttctacg tgcgtcatgt
      661 tttcattaat gccgaatttc tgccgcaggg ctttcattgc cagcaaatgt tgcccacgaa
      721 tggcatcgtt ataaacgctc ggatcaaatt ccggcagttc aatcgcgata ttaattggcg
      781 ttactgggta agcgccaacc agatgaactt cggtatggtt gacttgttct gccagttcga
      841 tcgtctcttt gaccagtttt tcattgagcg cattatgata cggctcttca ctggcgagat
      901 tcaccgccac cagcgcctta cctccttccg gccacggctg gtctttcacc atccacaccg
      961 ggcttgggca tttgcgtaac agatgccagt ccgttggagt aaaaatcacc gcttccagac
     1021 ggtcatgttg gtgcgccatt tttagcacca aatcgtgccc gccgctgatc acttcctgaa
     1081 tgatggcttc gaaaggacgg ttatgccaga ccactttaat ttcaatggga acgccagcat
     1141 tgagataata ttttgcctgc tcgtggatcc aggctgtacg ctggctgatg acgccctgac
     1201 gcatagcggt acgttcgtcc ggggagagca gggtggtcat ttcgtatgag aagtcataga
     1261 tcggcaaaaa ggctttaatt ttgccaccaa tccgttgatg taaataaaca gctcgccgca
     1321 atgctggttg gtcgtcctgg ttaggatcga taacaacgag catgttctga tacatagcca
     1381 tacagggtct ccttacaaca actgtcaacg cagtttgtaa ttaaaagatt aacccatatc
     1441 tggtgaatga aacagtgatg aaccttctgc cagatcaata aatcagaaaa atttaatgat
     1501 atgacagaag gatagtgagt tatgcggaaa aatcaggcaa cattacgcgt atgaccagca
     1561 agctgggcca gcgcatcgtt attttcgatg gtgatgtatt tacctttgac tgccagcata
     1621 ccgcttttct ggaagcgacc tagcagacgg ctgatggttt ctaccgtcag gcccagatag
     1681 ttaccgatat cgccacgagt catcgtcagg cggaattcac gaggggagaa gccgcgttgg
     1741 gcaaaacgac gggacaggtt gtagatgaat gcagccagac gttcctcggc atttttcttc
     1801 gacaacagca ggatcatgtc ctgatcgcct ttgatttcac cgctcatcag acgcatcatc
     1861 tgctgacgca gattcggcat tttaccggac aaatcgtcca gcgtttcgaa cgggatttca
     1921 cataccatcg aggtttccag cgcctgagcg aagctcgggt gatggccgct gccgatggcg
     1981 tcaaatccca ccaggtcgcc agctaaatgg aaaccagtga tttgctcgtc gccttgctca
     2041 gtgatggtat aacttttaat cgtaccggag cggatggcat aaagcgattt aagttcatca
     2101 ccagccttaa acagcgtctg gcctttctga ataggcttct tccgctcaat gatattatca
     2161 agctgatcaa gctcatgttc gttgagtgtg aacgggatgc aaagctggct gatgctgcaa
     2221 tcctggcaat ggatagcaca accgccagac tgaatgcgcc gtataattcg cttttccggg
     2281 atcataggtc tgctcaagcc gtaattgata tttgtcaatt ttaacatctt tttagggagc
     2341 aagtaagtct aagcaaacct taacagcaga gaattccgat attagatgta aatatatgtc
     2401 tatctatttg aaaaccatta agttgttaag ggtaacttta cataaaagtg tgaacaagct
     2461 ggcacaaatt gtttaatgtt tacagcaaaa gataaccttc gtggcgcaat aaccactctt
     2521 ttcgctgaac tccgcctgca tatccggtca tggtgccgtt tcggccaata acccgatggc
     2581 aaggtacgac gatgctgatg ggattcgagc cgtttgccgc accaacggca cgcgccgcgc
     2641 cagggcggcc caattgttca gccagttggc cgtaatgcat tacctgcccg caggggatag
     2701 tgcgtagagt tttccagact tcgcgctgaa atggcgtccc ccctgtggca gtgggaagcg
     2761 tatcaataat gctaagatta ccggcaaaat aatcactaag cttgtcgctt aaaccgcctg
     2821 ggttggtggc agaaatgcgc tcatagcctt ctttgcgata atggatgtcc agcagctgca
     2881 ccatgcgttc gctgtactct tcccattcaa ccgcccgcag gcgaaattgc tcatcgcaaa
     2941 tcacccacag tggacccagt tgcgtggcaa ttttttcttc aagtaatctc agcatccgtt
     3001 ctctcttaag acaaacgtgg gtaaatcccc ggacctatcg gcagaccaac aagataccac
     3061 gccagcaaca tcagcagcca taccaccaaa aagataagcg gatagggcaa gactaacgaa
     3121 tagtaagtac ccagtttcgc gtctggtttg tagcgttgca ggaatccagg aaacagtgga
     3181 acaaaaggag ataccggcgc taaaggcaat acggatgagt cggcaatacg aaagaggatt
     3241 tgcgcaaatg ccgggtgaaa gccaagtagc ataaacattg gtacgaaaat gggggccaga
     3301 atcgaccaga ttgcggaacc actggcaata aacatgcata agaaagagga aagcaacgcc
     3361 agaccgacaa acgccgggat gccgctaagc cctgaacttt ccagtatatc ggtcagcccc
     3421 acggcgatga atttccccat gttgctccag ttaaacatgg cgacaaactg ggcgagggga
     3481 aaaaccatca cgataaatcc cgccatctct ttcatcggtt caatcattaa atgcggtaaa
     3541 tccgcctgat gtcgaattgt gcgggtagcg atgccataag ccagcgaaac cacaaagaaa
     3601 aaaagaatga ttagtggca
//
LOCUS       DAJVUN010000266         3610 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.269, whole genome shotgun sequence.
ACCESSION   DAJVUN010000266 DAJVUN010000000
VERSION     DAJVUN010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.269"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..217
                     /locus_tag="OQQ76_003914"
     CDS             <1..217
                     /locus_tag="OQQ76_003914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416627.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1307 domain-containing protein"
                     /protein_id="HCS1970219.1"
                     /translation="AKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINV
                     SAEDAKKGITMAQMELVMKAAGFKEVK"
     gene            complement(258..728)
                     /locus_tag="OQQ76_003915"
     CDS             complement(258..728)
                     /locus_tag="OQQ76_003915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1456 family protein"
                     /protein_id="HCS1970220.1"
                     /translation="MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKE
                     DEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTD
                     DILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS"
     gene            complement(775..1494)
                     /gene="yehT"
                     /locus_tag="OQQ76_003916"
     CDS             complement(775..1494)
                     /gene="yehT"
                     /locus_tag="OQQ76_003916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310963.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BtsR"
                     /protein_id="HCS1970221.1"
                     /translation="MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVH
                     KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP
                     IDEERLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM
                     SGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR
                     NGLTVPVSRRYLKTLKEAIGL"
     gene            complement(1491..3176)
                     /gene="btsS"
                     /locus_tag="OQQ76_003917"
     CDS             complement(1491..3176)
                     /gene="btsS"
                     /locus_tag="OQQ76_003917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulatory system sensor histidine
                     kinase BtsS"
                     /protein_id="HCS1970222.1"
                     /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF
                     LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM
                     GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA
                     IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS
                     TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHIPGKPISST
                     YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR
                     LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK
                     AVSRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV
                     NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA
                     GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA"
     gene            3398..3463
                     /locus_tag="OQQ76_003918"
                     /pseudo
     CDS             3398..3463
                     /locus_tag="OQQ76_003918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
BASE COUNT          950 a          941 c          836 g          883 t
ORIGIN      
        1 cgccaaatac aaaaacatcg cgggtgttga agaaaaatta acctataccg atacctacgc
       61 gcaggaaaac gtgactatcg atatggaaaa agtggatttt aaagccctgc agggtatttc
      121 aggaatcaac gtttctgctg aagatgccaa aaaaggtatc actatggcgc aaatggaact
      181 ggtgatgaaa gccgctggtt ttaaagaagt gaaataatct gtcggcggcc atgtttcgca
      241 tggccgccat acccgtctta gcttttcttc acatgctggc gcgctgccag tccacgcaga
      301 aaataacgta aaaattgatc gccgcattcg cggaagtttt tatgatccgg tgcacgcatc
      361 atcgccgtaa tttccggcat cgaaacgcgg aactgctgtt cggtgaggat cgccagaatg
      421 tcatcggttt tcagcgaaaa cgcgatgcgt aattttttta gcacgatgtt gttattaatg
      481 cgacgttccg gctccagtgc cggagcagac tcatccttgc cgcgtttttc ataaatcagg
      541 ccattgagga atgacgacaa aacaatgtcc ggacaacgct gaaaaccctc ttcgtcttct
      601 ttacgtagcc agacggcgat ctgttccgcg gtggcttcga cattacccag cgccagaata
      661 cgcaccaggt cattattatt ggctttcaaa atgtagcgca cgctgcgcag aatatcgtta
      721 cttagcatga ggccttcagg tgttgatgag gcaaaaagcc attttagcag tcttttacag
      781 gccaatcgcc tcttttaagg ttttcagata acggcggctg accggcacgg ttaagccatt
      841 acgcaaaatc aactcggcct ggccgttatc ttccagacga atctcctgta aatgcgcgag
      901 gttaaccaga tactgacgat ggcagcgcag tagtggtgta cgactttcca gggtacgtaa
      961 tgtcaattcg gtaaagccct ctttcccttc gtggctggta acgtagacac cgctcatccg
     1021 actgctgaca aatgccacat ctttcatttg cagcaaataa atccgactat gcccagtaca
     1081 agggataaat ttcagcgcct gttgattttc tggtaacagc gaaacatcct gcttgctgcg
     1141 ttcctgccgc aaacgcgcca gcgttttctc cagtctctct tcatcaattg gcttcagcag
     1201 ataatcaaag gcgtgttctt caaaggcttt aatggcgtat tcgtcaaacg cggtgagaaa
     1261 aacaatatac ggacgatgtt ccgggtcgag catccccacc atttccagac cactgatgcg
     1321 cggcatctgg atatcgagaa acagcacatc cgggcgcagt ttatgcaccg cgccgatccc
     1381 ttccacggcg tttgaacact caccaacgat ttcaatatcg ctctgctcct gcaaaaatac
     1441 gcgcaggttc tcccgtgcta acggttcatc atcgacaatt aagactttaa tcatgcctcg
     1501 tccctccatg gtagtcgtaa cgttattcgg gtgtaactat caggctcaca ggcgacgctt
     1561 atcccatagt catcgccaaa ccgttcacgt aaacgcttat ccaccagatt catccccagc
     1621 ccactggcat tggttaccgg ttgatacaaa ccggcattgt cttcgatctc cagcatcaaa
     1681 tgttgcccct cacgtcgggc gctgattgcc actcgccctg tatccagcag ttgtgatgtc
     1741 ccatgtttaa tggcgttttc cactatcggt tgcagggtaa acgcgggcaa ttgctgctgg
     1801 gataattctt gcggaatagc aatgttgacc tgcaaccgcg actggaagcg cgccttttca
     1861 atttgcagat aagcgttcac atgttcaatt tcgtcggcga gagtaacaaa ctccgaaggc
     1921 cgctttaagt ttttgcggaa aaaagtggaa agatactgca ccagctggct ggcctgttcg
     1981 ctgtcgcgac ggctcaccgc tttaatggtg ttaagcgcat taaacaaaaa atgggggttc
     2041 acctgggcgt gaagcagttt gatctctgac tgggtgagca tcgctttttg ccgctcatat
     2101 tgcccggcga ggatctgcgc cgaaagcagt tgcgcaatcc cctcgcccag cgtgcggttg
     2161 attgaactaa ataaacggtt tttggcttca tacaatttga tggtgcccat cacccgctga
     2221 ttttcaccac gcaacggaat taccagcgtc gaccccagtt tgcattgcgg atgcaaagag
     2281 caacgataag gtacttcgtt gccatcagcg tagaccactt caccggtttc aatcgctttt
     2341 aaggtgtaag tcgaagatat cggtttgccg ggtatatggt ggtcgtcacc aattccggta
     2401 aaggccagca atttctctcg atcggtaatc gcgactgcac caatatccag ctcctgatac
     2461 agcacctgtg ccactttcat gctgttcact tcgttaaacc cctggcgcaa aatgccttcc
     2521 gtcgaggcag ccactttcag cgcagtggca gaaaaagccg aagtgtattt ttcaaacatc
     2581 gcgcgtttat ctagcaatat acgcataaac agcgccgcgc cgacggtatt ggtgaccatc
     2641 attggcgcag caatattact caccagacgc accgcatctt cataaggtcg ggcgatcgcc
     2701 aggatgatca acatttgcac catttcagcg acgaacgtga cggcaccggc ggtaatgggg
     2761 ttaaagactt tatcagtgcg cccgcgacgg atcaggatgc tgtgtaccag gccgccgagc
     2821 aatccttcaa cgatggtcga gatcatgcaa cttagcgcgg tcatgccccc catcgaatat
     2881 cgatgtaacc cgccggtcag gccaaccagc ccaccgacga ccggaccgcc gagtaagccg
     2941 cccatgaccg cgcctatcgc acgggtattg gcaatagaat cgtcaatgtg caacccaaac
     3001 caggtgccca tgatgcagaa gatggaaaag acgatgtagc agagaaattt atgcggcaga
     3061 cgaaccgtga cctgcattaa cggtatgaat aatggcgttt tactcattaa ccatgcaatg
     3121 actaaaaaaa cgcacatctg ctgaagcagc agcaacacca gattaaaatc gtacataccc
     3181 gcaaaccaca cttcccttta aaacgcgtaa catatattgc ctgcgtttaa ctttctttga
     3241 actcttgcag aaaaatgaga attcgtgagt acaatcactc aaaatcgcct ggcaaaaata
     3301 aaatcaccct ataaatgcac aaaaaacggg caaaactacc tggttcgcaa aactgcgtct
     3361 aaagttaaac cgggacctcg cgagcaaggg tgagacgatg gcgctttaca caattggtga
     3421 agtggcgttg ctttgtgata ttaaccctgt cacgttacgc gcgtgacgca acatttttaa
     3481 aaatcgacga agatcgtcca ggagcgccgt ttttcaaggg ttggatagat gattcgttta
     3541 ccatgtcgac gaacttcgac gaatttcgcc gataaaaagt gtcccataca tgccccattg
     3601 atgccccata
//
LOCUS       DAJVUN010000267         3592 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.272, whole genome shotgun sequence.
ACCESSION   DAJVUN010000267 DAJVUN010000000
VERSION     DAJVUN010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.272"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..202)
                     /locus_tag="OQQ76_003919"
     CDS             complement(<1..202)
                     /locus_tag="OQQ76_003919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970223.1"
                     /translation="MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTAT
                     FGNYAYLRAEKLGQLDNFFTHIC"
     gene            complement(367..558)
                     /locus_tag="OQQ76_003920"
     CDS             complement(367..558)
                     /locus_tag="OQQ76_003920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970224.1"
                     /translation="MGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY
                     QPRRETFRRLYQQLLPLMA"
     gene            complement(491..1819)
                     /gene="xylB"
                     /locus_tag="OQQ76_003921"
     CDS             complement(491..1819)
                     /gene="xylB"
                     /locus_tag="OQQ76_003921"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005077809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HCS1970225.1"
                     /translation="MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQD
                     PEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCA
                     QECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
                     TGEFASDMSDAAGTMWLDVAKRDRSDVMLQACDLSRDQMPALYEGSEITGALLPEVAK
                     AWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHS
                     FCHALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADESAEPVWFLPYLS
                     GERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKSQSVTL
                     IGGGARSEYWRQMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH"
     gene            complement(1891..3213)
                     /gene="xylA"
                     /locus_tag="OQQ76_003922"
     CDS             complement(1891..3213)
                     /gene="xylA"
                     /locus_tag="OQQ76_003922"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HCS1970226.1"
                     /translation="MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRF
                     AACYWHTFCWNGADMFGVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVPFYCFHD
                     VDVSPEGASLKEYINNFAQMVDVLAAKQEESGVKLLWGTANCFTNPRYGAGAATNPDP
                     EVFSWAATQVVTAMEATHKLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVE
                     HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAG
                     HSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTG
                     GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNS
                     ELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLENLVNHYLFDK"
BASE COUNT          942 a          976 c          797 g          877 t
ORIGIN      
        1 ggcagatatg ggtaaaaaaa ttatccagtt gcccgagttt ttctgcgcga agatatgcat
       61 agttaccaaa agttgctgtc attaacacgc caagaaaata gccttttcca cttagcaatg
      121 ggcatgagat ccatagccca accagataaa ccagcgcccc gacaacaaat aatagttttg
      181 ccacagtttt tgaggttttc ataacgatct ccatatctac cagcgataca ttacgagtaa
      241 ccaacgaaag acaaaactga aaaatgccat taacaaatga ttttcagaat aaattcatac
      301 taaatattaa ttagtgagat atatagatgt gaattatccc ccacccggtc aggcagggga
      361 taacgtttac gccattaatg gcagaagttg ctgatagagg cgacggaacg tttcacgtcg
      421 tggctgataa gcggcataac gctgcgcatc tggtagatgc gactgttcta acggtagctg
      481 cggcaacaac tcaatgagcg atttctctgg attcgccgca atctgcgcca gccttgctgc
      541 gcccagtgct ggccccacat ccccccgtac ggtaatcgag ctgctgaccg ctgatatccg
      601 ccagcatctg acgccagtac tcactacgcg ccccgccacc aatcaacgta acactttgcg
      661 atttaatgcc gcaggcatgc acgacatcca tgccatctgc cagcgcataa cccacgcctt
      721 ccagcactgc tcgcgccagt tcattggggc catgttgatg agtcaaacca aagaaaaccc
      781 ccttcgcctg gggattattg tgtggtgtac gctcgccgga aagataaggc agaaaccaaa
      841 ctggctcggc actttcatca gcctgttgag ctgcagcgat taaagctggg acattgcaca
      901 ggccggttaa tttcgcgacc caatccagac acgatgctgc actcagcatt acagacatta
      961 aatgccaacg ctgcggtagc gcatggcaaa agctgtgtac agcgctttct ggcttgctta
     1021 agaacccttc gctgacagca aaatagaccc ccgacgtccc cagcgataac attgcctgat
     1081 tagcatcaac cattcccaca ccaactgcac cagctgcatt gtcgccaccg cctgcgacaa
     1141 ctggcaccgt cgccataccc cacgctttcg caacttcagg taacaaagca ccagtaattt
     1201 cgctgccttc gtataatgcg ggcatctggt cacgagataa gtcgcaagcc tgcagcatga
     1261 cgtcactccg gtcacgcttt gcgacatcca gccacatggt gccagctgcg tcagacatat
     1321 cgctggcaaa ctcccccgtc atacgcagac gcaagtaatc tttcggtaat aatactttgt
     1381 cgatttgacg gaatatctcc ggctcatgcc gctgaaccca tagcaattta ggcgcagtaa
     1441 atccgggcat catcaggttg ccggtaatca ctcgtgattg cggaactctc gcttccagca
     1501 aagtgcactc ttgcgcacag cgcccgtcgt tccacaaaat ggcagggcgc aatacccgtt
     1561 gttgagcatc cagtaaggtt gctccatgca tctggccggc aatacccaat gctttaacgt
     1621 cctgcagaga atgctgatcg cccagagctt tcattgcgcg atcagttgcc tgccaccact
     1681 gttccgggtc ttgttccgac cagagtggat gcgggcgcga aacggtcagc ttttccgttt
     1741 gcgaagcaac cacctcaccc tgctcgttga gcaaaataac ttttacgccc gaggtgccaa
     1801 gatctatccc gatatacata tcgatcgttc cttaaaaaaa tgcccggtat cgctaccgat
     1861 aaccgggcca acggactgca cagttagccg ttatttgtcg aacagataat gatttaccag
     1921 attttccagt tgctcctggc gaccactctg atgcaccgga gacaaattat gttcctgagc
     1981 atatttggct aaatctgcca gtgacatttg gcctttcagg atttgctggc ccaattcgct
     2041 attccagccg gaataacgct gcgcgatgcg tttatccagc tcgccatctt caatcatgcg
     2101 cgctgcaatt ttcagcgcca gtgccatcgt atccatcgcg ccgatatgac cgtaaaacag
     2161 atcatattta tcagtacttt gacgacgtac tttggcatcg aagttcagac caccggtggt
     2221 gaaaccgcct gctttgagaa tttcatacat caccagcgca ttctcttcca cactgttcgg
     2281 gaactggtcg gtgtcccagc ccagttgcgc atcgccacgg ttggcgtcga cagaaccgaa
     2341 caggccaagc gcaatggcgg tggctatttc atgatggaaa gagtgacctg ccagcgtcgc
     2401 gtggttagct tcaatgttca gtttaatctc tttttccaga ccaaactgtt tcaggaagcc
     2461 atagaccgtc gcggcatcgt aatcatattg atgtttagtc ggttcttgcg gtttcggttc
     2521 gataagcaac gtgccctgga agccgatttt atgtttatgc tcaaccacca tctgcataaa
     2581 gcggcccagt tgttcacgct cctgacgcaa gtcggtattt aacagcgttt cgtaaccttc
     2641 acgaccaccc cacaggacat agttttcacc gcccaattta tgggttgctt ccatcgctgt
     2701 aacaacttgc gttgccgccc agctgaagac ttcaggatct gggttcgtcg ccgcacccgc
     2761 gccatagcga gggtttgtaa agcagttagc ggttccccac agcagcttca cgccgctctc
     2821 ttcttgcttg gctgccagga catcaaccat ttgcgcaaaa ttattgatgt actcttttaa
     2881 cgacgcgccc tcaggggaaa catccacatc gtggaagcaa taaaatggca catgtaactt
     2941 gtggaaaaac tcaaatgcga catctgcttt acgcttcgcc aacgccagtg cctcaccagg
     3001 ctgctgccac ggacgattaa acgcccccac accaaacatg tccgccccgt tccagcagaa
     3061 ggtgtgccag tagcaggcgg caaaacgcaa gtgctcttcc atacgcttac ccaacaccag
     3121 ttcgtcggga ttgtagtgac ggaatgctaa cgggtttgag gattttgagc cttcataacg
     3181 aacgcgatcg agctggtcaa aataggcttg catattgaac tccataatca ggtaatgccg
     3241 cgggtgatgg atgatgtcgt aatattgggc actccctttc agttgctcaa ttatgttatt
     3301 tcacactgct attgagataa ttcacaagtg tgcgctcgct cgcaaaataa aatgggatga
     3361 tgaaactggg taattcctcg aagataaaaa tgcaataagt acaattgcgc aacaaaagta
     3421 agatctcggt cataaatcaa gaaataaacc aaaaatcgta atcgaaagat aaaaatctgt
     3481 aattgttttc ccctgtttag ttgctaaaaa ttggttacgt ttatcgcggt gattgttact
     3541 tattaaagct gtcctctaac tacagaaggc cctacaccat gaaaataaag aa
//
LOCUS       DAJVUN010000268         3575 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.273, whole genome shotgun sequence.
ACCESSION   DAJVUN010000268 DAJVUN010000000
VERSION     DAJVUN010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.273"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(84..776)
                     /gene="ospZ"
                     /locus_tag="OQQ76_003923"
     CDS             complement(84..776)
                     /gene="ospZ"
                     /locus_tag="OQQ76_003923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     methyltransferase OspZ"
                     /protein_id="HCS1970227.1"
                     /translation="MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDK
                     KYISGITRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASIPEGSWLTV
                     ISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVFRNDSPQGELR
                     ANRFIELYDIKREIMQVLRDESPELKPIKSEIIIAREMGELFSYASEEIDSYIKQMND
                     RLSQIKARMSVT"
     gene            832..984
                     /locus_tag="OQQ76_003924"
                     /pseudo
     CDS             832..984
                     /locus_tag="OQQ76_003924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            2364..3311
                     /gene="icsP"
                     /locus_tag="OQQ76_003925"
     CDS             2364..3311
                     /gene="icsP"
                     /locus_tag="OQQ76_003925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease IcsP"
                     /protein_id="HCS1970228.1"
                     /translation="MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
                     TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
                     DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
                     FNAMGGSYIYSENGGDRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
                     KYSGWVRSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
                     KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
BASE COUNT         1134 a          649 c          674 g         1118 t
ORIGIN      
        1 ccaaacgaat cggaaaatcg atactggaaa aactctaact cggtggccag tttttgttga
       61 ccacttcata caattaatat acattaagta acagacattc gagccttgat ttgagaaagc
      121 ctgtcattca tttgttttat gtagctatct atttcctctg atgcataact aaaaagttct
      181 cccatttcac gagcaataat aatctcagat ttaataggct ttaactctgg cgactcatct
      241 cttaacactt gcataatctc tctttttata tcatatagtt ctataaaccg atttgcccgt
      301 agttctcctt ggggagaatc atttctgaat acaacaatta tatacaaaaa atcactattt
      361 tctttaggga agatcttaca actaatctct gggagctcac ataatgcatg taagtcagga
      421 tggtacaaac tatccacaga aaattgcccc ataggacgtt ttccagatat aactgtcaac
      481 cagcttcctt ccggtatact ggcttcgtct ctggaaatag gctgaaaatc ttccggacat
      541 ggagaataca ttgtcttcat ataattaagt cgtctggatt tctcattaat aaactcctct
      601 atttttaatt gtgccatact tctggttata ccagagatat acttcttgtc atatatgttt
      661 ggtgattcat taaagtaacc atgttcaact ctaggataaa tatttctcac tatatattca
      721 gtatttgcag tatttattgg aaatacgttc ttaatattct tgatgggact aatcatttta
      781 atctctatac tcaaatataa acattaccat gaacaatata attgttccta agtggaatgt
      841 ctccacggag aacactttat ctatcgggaa atagtgcggg caacagtgtt taattatatc
      901 gagtgcgatt acaatcgctg gcgacggcac cgttggtgtg gcggcctcag tccggaacaa
      961 tttgaaaacc agaacctcgc ttaggcctgt gtccatatta cgtgggtagg ctcacagagc
     1021 ctcacttacg actgcgtcca tattatgtgg gtaggatcaa taaagacgtt ttatatgtgt
     1081 ctgcttgcag ccagaaaatt tataccctgc aggtatcata gacatgcttg ataacttaat
     1141 tggggctccc tcttcctttt atggtgtaat tgtttgattg aatacttccg gggatttcag
     1201 tatgaaatga agtatattta atatacttta caaaaagttt gtattagtgg aataaggaca
     1261 atagcttatc caaactgcca agcctcttta ttataagtaa gatctggcac tggaatattc
     1321 tcaaaaggac taacatcatc accacgacct tcaaccaacc attttattgc atttaaatcc
     1381 ctgaatagtt cagtagtggt cgatttggga aacgcacaat attgtacggt tacgttatcg
     1441 caatagagtg aactcccgcc ctatacggcg ttttcaagga ttagtcctta atcggacaac
     1501 cacattaaag cataataaat aattaagctt taataatata ctatagatac agttctatta
     1561 taaaaaatac tattttaggt gatgcattaa attagtagaa tatttattct tttataaaag
     1621 caccaatgaa ttgtccaagt aaacatgagg taaaatgtgt agaggataac tgagtttggt
     1681 cactttaact gtattagtcg cagtctgact ctcgacttta aaaggatggg aattacctgt
     1741 actgatagtg agaaagcttt ccattgaaat aagtcaaata aaagttgatg gcttcagtgc
     1801 taaagtgagg tgcccgctag ccgtattcac tcgaatcgga attcaatgta ttgcttctgc
     1861 catttccata atatttcacg ggaaaaacaa aatctgaaaa actatactta agtgttgtat
     1921 tgagtcagtt gagatacaaa tacatattta tcagcacacg ttacgtcaaa tacaggaggt
     1981 tgtcatgttg gtactgaaag gcacgttggc tattgcagcc gtgatgacaa tttattgtct
     2041 tatcgttgtt cttatggaac gcttttctga ttgatttcat attggcgaga gaacaagaag
     2101 gtgagtagaa ttgtcgcgga atcctgaaac tatcagcctc aggtatgaac accaaaaggt
     2161 aggtagagaa atctatggcc cccgttactt tattcgcaca atgaggtatt ttttattttt
     2221 acaaaagttc aataaatatt ataataaaag atatgttctt ggtaacataa acaaatattt
     2281 aattaaaata atgcttggca ttgacgttta tcttataaag taagaagatc atggacattt
     2341 caaccaaaaa agtagagttc tcgatgaaat taaaattcct tgtacttgca ctttgtgtac
     2401 ctgcgatctt tactacacat gctaccacta actatccact tttcataccg gataacatca
     2461 gtacggatat tagtctagga tctctgagtg gcaaaacaaa agaacgcgtt tatcatccca
     2521 aggaaggggg gagaaaaatt agtcaactgg actggaaata cagtaatgcg actattgtta
     2581 gaggtggcat cgattggaag ctaattccaa aagtgtcttt cggagtttcc ggttggacta
     2641 ctttaggtaa ccagaaagca agcatggttg ataaagactg gaacaattcc aatacccctc
     2701 aggtatggac cgaccagagc tggcatccca atacgcatct ccgtgatgct aacgaattcg
     2761 agctgaatct taaaggttgg ttattaaata atttggatta tcgacttgga ctaatagcag
     2821 gttaccaaga gagtcgttac agttttaatg caatgggagg gagttatatt tatagtgaaa
     2881 acggggggga caggaataaa aaaggggcac atcctagtgg tgaaagaaca ataggttaca
     2941 aacagctctt caaaatacct tatattggat taactgctaa ttaccgccat gagaattttg
     3001 agtttggagc agaactgaaa tatagtggtt gggttcgttc atctgataca gataaacact
     3061 atcagactga gacaattttt aaagatgaaa taaaaaacca aaattactgc tctgttgctg
     3121 cgaatattgg atactatgtc acccccagtg caaaatttta tatagaaggc tccagaaatt
     3181 acatttctaa taaaaaaggt gatacatctc tttatgagca aagtaccaat atatctggca
     3241 ccattaaaaa tagtgcaagt attgaatata ttggttttct cacttccgca ggtataaagt
     3301 atattttttg aattggttca ccgagttgat tacgttttca tggctaaaaa ttgccgccca
     3361 ttgtgagtca tattcgccct gactttccag aaccatacga actgcccgtt gacggacttc
     3421 gggggaaaaa cgtgtatttt tagtcattct gtttacctct ttctcagggc gtttagtctc
     3481 caggatttcc ggggcggttc aaaaaactct tcgttgatta ctgtggactt actgttggca
     3541 ttaccgaccc tgagaccgga gaaataagaa ccgct
//
LOCUS       DAJVUN010000269         3568 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.274, whole genome shotgun sequence.
ACCESSION   DAJVUN010000269 DAJVUN010000000
VERSION     DAJVUN010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3568
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.274"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            233..544
                     /locus_tag="OQQ76_003926"
     CDS             233..544
                     /locus_tag="OQQ76_003926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HCS1970229.1"
                     /translation="MFNVITHPAALDELLELPDNLRGRMTRLIERLEQEGNKMKMPHS
                     RVIGGGLFELRVGDKNIARTLYAYATGNEIYLLHAFVKKTQKTPTKAIEIARMRLKEM
                     N"
     gene            544..831
                     /locus_tag="OQQ76_003927"
     CDS             544..831
                     /locus_tag="OQQ76_003927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HCS1970230.1"
                     /translation="MKVKGVPFSQVKQKLLSTPEAVKGYEDADKELEMVEMLYEMREK
                     AGLTKSALAERMGLRPSAISRLESNPLGASMKTLTKYAHACGATIDIHAVY"
     gene            complement(1369..2556)
                     /locus_tag="OQQ76_003928"
     CDS             complement(1369..2556)
                     /locus_tag="OQQ76_003928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HCS1970231.1"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT
                     LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPDCPWQHIVF
                     TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPRIFTVIHTWGRDQQWHPHI
                     HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKR
                     EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPVSRLEHYAGQDEIGLR
                     YNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITE
                     TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR
                     WCG"
     gene            complement(2556..2921)
                     /locus_tag="OQQ76_003929"
     CDS             complement(2556..2921)
                     /locus_tag="OQQ76_003929"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970232.1"
                     /translation="MARSAKPRKRKPAFQRSKLPRYVVKLHEDDFFDEEDAEVLRFDS
                     FDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIARCTEREFATILSGISAGG
                     MYCPECGTVHWPDGVAPPF"
     gene            3006..3335
                     /locus_tag="OQQ76_003930"
                     /pseudo
     CDS             3006..3335
                     /locus_tag="OQQ76_003930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146522.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3 family transposase"
     gene            3365..3448
                     /locus_tag="OQQ76_003931"
                     /pseudo
     CDS             3365..3448
                     /locus_tag="OQQ76_003931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
     gene            3448..3543
                     /locus_tag="OQQ76_003932"
                     /pseudo
     CDS             3448..3543
                     /locus_tag="OQQ76_003932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858351.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT          936 a          924 c          844 g          864 t
ORIGIN      
        1 taaggtgaaa tctgtcaatc agtaccggct tacgccgggc ttcggcggtt ttactcctgt
       61 gccatatgca acaacggagt gccgccttcc atgccgctaa cgtggcatca aaaaatccct
      121 cttctccagt tgcccccctc cgaactcaga gtgtattttc atttattgat gaaatttact
      181 gtttgcgcaa ttttcctgtt ttagtgtatt ttgtcattct ggaggctata atatgtttaa
      241 tgtgattact cacccggccg cactggatga acttctagaa ttaccagaca atctgcgtgg
      301 tcgtatgacc agactgattg aacggctgga acaggaaggt aacaaaatga aaatgcctca
      361 cagccgtgta attggcggag ggctttttga actgagagtc ggggataaaa atatcgcaag
      421 gacactgtac gcttatgcaa cgggtaacga aatctatctg ctgcatgcat ttgtgaaaaa
      481 aacgcaaaag acaccaacga aagctattga aattgccagg atgcgtctga aggagatgaa
      541 ctgatgaaag taaaaggtgt tccattcagc caggtaaagc aaaaactact cagtactcca
      601 gaagctgtca aagggtatga ggatgctgac aaagaactgg agatggtgga aatgttatac
      661 gaaatgagag aaaaagcggg attaacaaag tcagcactgg ccgaacgaat ggggttacgc
      721 ccgtcagcca tcagtcgcct ggaaagtaac cctttagggg ccagcatgaa aactttgaca
      781 aaatatgctc atgcctgtgg cgcaaccatc gatattcacg ctgtctattg agggggccgc
      841 ttggaattcg gaaaataaac cacgttaaga ctatttttta gataaatgac tttcaggaat
      901 cgccaagatg gcgggataac agcggttttg gtgtcctaaa tcgtacaatt ctgtacatcc
      961 acgcaaggga atgtacggaa gtaagccaga cggttatcgg acggtcagaa catttcgtac
     1021 agcctttacg ttcagtgagt tagctggcct ggacgtaacc actcgttagc tcaattctct
     1081 tagcgtggga aaatttccga attccaagcg gaccccttta tccttgcccc gctgaatgag
     1141 gaaacgctgt tccgggggat tatgctgaac gtcttccgtt catcgatagg aattaaaacc
     1201 ccaaaaaggt taaaaaaaca ccacaaaacg gatgtttctt caacaccact tttgctcata
     1261 tgaacggaac cgacgattaa actggatggc tctgattgat tcagggtatg aatggcggtt
     1321 ttttgctccg tttccctcaa aatggacgct acttaccctc tgcggctctc agccgcacca
     1381 ccgcatccgg gccagcggct catgcatcag gacctgctct gccagacggt agccccgctt
     1441 cagccccgta aaacgcatct gactcccgca cagcacgcac ttcagcgggt caaccttcag
     1501 taacctctga tacatccctc tccaggtgat ttgcatcgcc gtttttctca ctgtctccgt
     1561 tatgatgtac accacttctt ccagtaaccg ccgtttcgcc ggactcagaa aaccgtagta
     1621 cctcaccata cggaacccct tatccgccac atgccaggag aacctttcca tgaactcatc
     1681 tccactcatc aacaggtatt cttcccgttt tgttcggtga ctgttgtaac gcagtccgat
     1741 ttcatcctga ccggcataat gctccagacg actcaccggc accggtggct ttttcaggta
     1801 agagccaaag tacaccgcca catgggtggc attatccatc acccgggata cgttgacatt
     1861 ccagccacgg cggtaatgcg tgtccaggaa gcgattccat tcccgtttac tgcttccttc
     1921 tgctgccagc gcatccggca tcaccaggtc agggtatttc cgtgacagta accgtgttat
     1981 ccggtagcgc cacatgctca tcaccttacg ggcgtaaaaa tgaagatttt tccaggtgtg
     2041 gcccgacgtc acaccaccgg cagttgtcga taaatggata tgcggatgcc actgctggtc
     2101 acgcccccat gtgtggatca ccgtgaatat cctcggctcc acatctgcct gatggcagat
     2161 ttccagtatc acatccgctg caatgcggct catctctgcc agcaaccacc ggttgtggaa
     2221 caccagggac cagtactggc agggtaacgt gaacacaata tgctgccatg ggcagtcggg
     2281 gaccaggctc agcagatact gtatccactg tgcgccagcc ttcaccccgc agtgcgggca
     2341 ggagcggctt ttacaccgga agcagacctt ttttgtatgg caacagtccg gtgatgaaca
     2401 gcaccactgt gtatacccca tcagtgtggt cccgcacgcc atgattttgg tcaccgactc
     2461 aatcaccacc ggacgtactg ccccttccgg ctgcttctcc agccagttaa gccagcggtt
     2521 tccctgctga aagatatcgg caaaacgggg aagcatcaga agggcggggc gactccgtcc
     2581 ggccagtgaa ccgtgccaca ctccgggcag tacataccgc cggcgctgat accggaaaga
     2641 atggtcgcaa attcccgctc cgtgcagcgg gcgatttccg gatacccttc gtcatcaaca
     2701 cgtacaaacc agaagaccag ctttttgttt cccgcatcca caaagaacgg aatattcagg
     2761 tctgcgcagc attcaacggc atcgtcaaaa ctatcaaagc gcagaacttc tgcgtcttct
     2821 tcgtcaaaaa aatcatcttc gtgaagcttc acgacatagc ggggaagttt gcttctttga
     2881 aaggcgggtt tacgtttacg gggtttagct gaacgggcca tataaccacc tgaaagacaa
     2941 tgacattgcc tgtttttata acggtaattg cagaccatga caagccgcag ccgtcaggct
     3001 gcctactcga gcttcagctc aataaaggcg agtatcgaca taaattaccc cgatggatct
     3061 tttttgcaaa tcagggtgaa ttcacgaccg gtgattacga agaaatcatg aataaggcca
     3121 gcgccctgag tctggtatcg aatgcaatcc tgtactggaa cacatcaaga ataagcaata
     3181 ttgttgaagg gttacgtgaa aatggtgagg ttattgatga tgacgtatta gcccatatat
     3241 cattactgcc ctataaacac gtattaccta atggtactta ttttgttgat ggagaacctt
     3301 acggtactga gcctaccgaa agagcaaaac cgtaagtttc tgttcaaatg ctcccgctgg
     3361 tccatccgga cagattatcg accatcaggc tgtacaggcc tgggcggaca gcctcagtac
     3421 tgacaatccg ttaccggtgc cacgctgatg gaacagaagt ggaccagtaa ggcgctttct
     3481 gatttggcgc ggttatatga ttttctggtg ctggccagta aacctgctgc cgccagaatg
     3541 gtacacgtat aggaaattga aaaaccag
//
LOCUS       DAJVUN010000270         3560 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.275, whole genome shotgun sequence.
ACCESSION   DAJVUN010000270 DAJVUN010000000
VERSION     DAJVUN010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.275"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..230)
                     /locus_tag="OQQ76_003933"
     CDS             complement(<1..230)
                     /locus_tag="OQQ76_003933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970233.1"
                     /translation="MTKNTRFSPEVRQRAIRMVLESQGEYDSQWAAICSIAPKIGCTP
                     ETLRVWVRQHERDTGGGDGGLTTAERQRLKEL"
     gene            285..1001
                     /locus_tag="OQQ76_003934"
                     /pseudo
     CDS             285..1001
                     /locus_tag="OQQ76_003934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707408.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
     gene            complement(1005..1196)
                     /gene="hemP"
                     /locus_tag="OQQ76_003935"
     CDS             complement(1005..1196)
                     /gene="hemP"
                     /locus_tag="OQQ76_003935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HCS1970234.1"
                     /translation="MRYADSRKLTPETDANHKTASPQPIRRITSQTLLGPDGKLIIDH
                     DGQEYLLRKTQAGKLLLTK"
     gene            complement(1328..2374)
                     /gene="aroH"
                     /locus_tag="OQQ76_003936"
     CDS             complement(1328..2374)
                     /gene="aroH"
                     /locus_tag="OQQ76_003936"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroH"
                     /protein_id="HCS1970235.1"
                     /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK
                     ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG
                     WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA
                     IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT
                     IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR
                     QLEVCEDICQQIRNGSTAIAGIMAESFLREGAQKIVGGQPLTYGQSITDPCLGWEDTE
                     RLVEKLASAVDTRF"
     gene            complement(2531..3364)
                     /gene="ppsR"
                     /locus_tag="OQQ76_003937"
     CDS             complement(2531..3364)
                     /gene="ppsR"
                     /locus_tag="OQQ76_003937"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="posphoenolpyruvate synthetase regulatory
                     kinase/phosphorylase PpsR"
                     /protein_id="HCS1970236.1"
                     /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE
                     NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ
                     EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR
                     CGKTPTSLYLAMQFGIRTANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR
                     EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM
                     Y"
BASE COUNT          874 a          851 c          934 g          901 t
ORIGIN      
        1 tccagctctt tcagacgctg acgttcagcg gtggtgagcc cgccatcacc gcctccggta
       61 tcccgctcat gctggcgtac ccagacacgc agagtctccg gtgtacagcc aatctttggg
      121 gcaatggaac aaattgccgc ccactgtgag tcatattcgc cctgactttc cagaaccata
      181 cgaatcgccc tctgacggac ttcgggggaa aaacgagtat ttttagtcat cctgtttacc
      241 tctttctcag ggagtttagt ctccaggatt cccggggcgg ttcaggggtg atgaataccg
      301 acaacatgtc gctgctggga ctgacgcttg attacgggcc gtttggtttt cttgatgatt
      361 acgaacccgg ttttatttgt aatcactcgg atcatcaagg gcgttatagc tttgataatc
      421 aacctgctgt cgcgttgtgg aatttacagc gtctggcgca gacattgtca ccatttgttg
      481 ccgtagatgc cctgaatgag gccctggaca gctatcagca ggttttgttg acgcattatg
      541 gacaacggat gcggcagaaa ctgggcttca tgacggagca aaaagaggat aacgcgctac
      601 tgaatgaatt attcagtctg atggcgcgag agcgcagcga ttatacccgc acattccgca
      661 tgctgagtct gaccgagcag cacagcgcgg cgtcaccgct acgtgatgag tttattgatc
      721 gtgcggcatt tgatgactgg tttgcccgtt atcgggggcg tttgcaacaa gacgaggtta
      781 gcgatagtga gcgtcagcaa ctgatgcaaa gcgttaaccc agctctggta ttgcgcaact
      841 ggttggcgca acgggcgatt gaagcggtag aaaagggtga tatgatggaa ttgcaccgcc
      901 tgcatgaggc gttgcgaaat cctttcagcg acagagatga tgactatgtc agtcgtccac
      961 ctgactgggg taaacggctg gaagtcagct gctcgagtta aaggctactt agttaacagc
     1021 agcttgccag cctgagtttt acggagcaga tattcttgcc cgtcatgatc gataatcagt
     1081 ttgccatccg gacctaacag tgtctggctg gtaattcgcc ggatgggctg cggggaagcg
     1141 gtcttgtgat tggcatccgt ttcaggcgtg agttttctgc tatccgcata acgcataaaa
     1201 attaataata attgatataa caatgattct tattatcaat attatggcag gccagagcaa
     1261 gcagtaatgt gttgagaaga caacaagttg cgcagaaatg cccatcccat caggaatggg
     1321 cacgcattca gaagcgggta tctaccgcag aggcgagttt ttcgaccagg cgttcggtat
     1381 cttcccagcc cagacacggg tcggtaatgg attgaccgta agtgagcggc tgaccgccga
     1441 cgattttttg cgctccttcg cgcaggaaac tttccgccat aattccagca atcgccgtag
     1501 agccattgcg gatttgctga caaatatcct cacaaacttc taactggcga cggtgctgct
     1561 tctggcagtt accgtggctg aaatccacca ccagatgttc aggtaaatca aactcgtgca
     1621 gcgtatcgca ggctgcggcg atatcatcgg catgataatt cggttttttg ccgccacgca
     1681 taataatgtg gccatacggg ttgccgctgg tctgatagat ggtcatctga ccatttttgt
     1741 ctggcgagag gaacatatgg ctagcgcggg ctgcgcggat agcatccacg gcaatccgcg
     1801 tgttgccatc ggtaccattt ttaaaaccta ccggacagga gagtgctgaa gccatttcgc
     1861 ggtggatctg actttcggta gtacgagcgc caatcgcgcc ccaactgatt aaatcagcaa
     1921 taaactgacc ggtcaccata tcgagaaact cagtcgcggt agggacaccc agctcattta
     1981 cctgtaaaag taatttgcgc gccagctcca gaccgtgatt tacccgatag ctgccgttta
     2041 aatccggatc ggagattagc cctttccagc cgacaacagt tcgtggtttt tcaaaatagg
     2101 tgcgcattac gatttccagc cgtgactggt actggttgcg cagcgactgc agacgggtgg
     2161 cgtactccat tgcagcggtg agatcgtgga tcgagcaggg gccaataatg accaacagtc
     2221 gcttatcttc accattcagt attttttcaa ttctgcggcg ggagtcggtg acatgggtgg
     2281 cgacgccagg cgttacggga taccgtagcg cgagttcggc gggcgttacc aggctctcaa
     2341 tacgcgcagt acggagttcg tcagttctgt tcattacaag tctcagaaat ttgttgcttc
     2401 tacggcagga ctaccgggaa gtgatgcgca tcacgataaa ccaatcgcag ctgatttcaa
     2461 gtgcgaggtg tgtcacacct agccgggtgg ttagcatgat aacaaaaaaa caaatcaacg
     2521 cactagttct ctagtacatt cggcgactaa ggcccatgat atcgaggatc ttggtggcaa
     2581 tctcttctac cgaataattg gtactgttaa tccacgggat ctgattttta cggtacaagg
     2641 cttccacttc cgcgacttcc attctgcact gacgaagcga ggcatagcga ctgttctccc
     2701 gacgttcctc gcgaatcgcc gccagacgtt ccgggtcgat agtcaggccg aacaatttat
     2761 gctgaagcgg tttgagcgac gcgggtagca ccagattatc catatcgtcg gcaataaagg
     2821 ggtagtttgc cgtgcggata ccaaattgca ttgccagata cagactggtg ggggttttac
     2881 cacagcgaga aacaccgagc aggatcacct gagcctgatc cagattgcgc aacgaaatgc
     2941 cgtcatcgtg ggcaagggtg taatcaatcg ccgcaatgcg cgcatcatat ttattgagat
     3001 tattagggtt aaggccatgg gtacgatgag caatcggcgt tggatccagt ttcatctctt
     3061 gttgtagcgg ggcaaccagc gcctgaacga tatcctggca aaagccttca ctttgcaaga
     3121 tgatggcgcg aatctccggc aacacgatgg agtagaagac cagcgggcgc acacctgtct
     3181 ggtgataaat tgcgtcaatc tgatccttca ctgcccgtgc acggctctca ttttcgacaa
     3241 acggcagcgt aatgctgctg atagtgacgg gaaattgtga cattactgcg tgtcctaata
     3301 cctccgcagt tattgccgta ccatcagaaa tataaaaaac gtggcgatca acagcattat
     3361 ccattttgtt cttcccgtga tgcagacata attctatgaa agcataaatt aaaaacgcac
     3421 agaagcgtag gaggtaatgt ctggtttata aaatgaacct tcaattttat tttttatgaa
     3481 aacagtattt catttttatg gtttcgttta taccgatggt ttatgtggaa attgtcgaat
     3541 agagcaggtt tgcgcaacgc
//
LOCUS       DAJVUN010000271         3456 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.276, whole genome shotgun sequence.
ACCESSION   DAJVUN010000271 DAJVUN010000000
VERSION     DAJVUN010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3456
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.276"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..931
                     /locus_tag="OQQ76_003938"
     CDS             <1..931
                     /locus_tag="OQQ76_003938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HCS1970237.1"
                     /translation="TYMIIPEIAINLGCVLPYHGSYFAAASLVEPMCCIIGAYHANYH
                     TTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQV
                     QKLLPVDLAASKGIELVYVNTKGMSDPVQTLRALTGDVGFDDIFVYAAVPAVVEMADE
                     LLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQL
                     QPSFMVTHIGGLDAVPDTVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKE
                     LARLVEETHGIWNEQAEKYLLAQFGIDIGEAAQ"
     gene            928..1893
                     /gene="yggF"
                     /locus_tag="OQQ76_003939"
     CDS             928..1893
                     /gene="yggF"
                     /locus_tag="OQQ76_003939"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HCS1970238.1"
                     /translation="MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALN
                     DVAFRGRVVIGEGEIDHAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAV
                     MAFAPRDSLLHAPDMYMKKLVVNRLAAGVIDLSLPLADNLRNVARALGKPLDKLRMVT
                     LDKPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISAC
                     AVKALGGDMQAELIDFCQAKGDYTENRQIAEQESKRCKAMGVDVNRVYSLDELVRGND
                     ILFSATGVTGGELVNGIQQTANGVRTQTLLIGGADQTCNIIDSLH"
     gene            1915..2424
                     /gene="fumE"
                     /locus_tag="OQQ76_003940"
     CDS             1915..2424
                     /gene="fumE"
                     /locus_tag="OQQ76_003940"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarase E"
                     /protein_id="HCS1970239.1"
                     /translation="MAKLTEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVD
                     NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQD
                     ETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
                     TTILKELTP"
     gene            2421..3134
                     /locus_tag="OQQ76_003941"
     CDS             2421..3134
                     /locus_tag="OQQ76_003941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside/nucleotide kinase family protein"
                     /protein_id="HCS1970240.1"
                     /translation="MKIELTVNGLKIQAQYQNEEIENVHKPLLRMLAALQTVNPQRRT
                     VVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGA
                     PETFDVAKLAENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK
                     WCQLAQFCDFSIFINAPATALRERLVGRKLAGGVSLADAEAFYDRTDGPNVRRVLEES
                     LPANLTLMMTATGEYRLVD"
     gene            complement(3106..>3456)
                     /locus_tag="OQQ76_003942"
     CDS             complement(3106..>3456)
                     /locus_tag="OQQ76_003942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708691.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCS1970241.1"
                     /translation="ADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAVACLEAL
                     SPPLLLLDEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLED
                     GVIRNVNPPDDIHP"
BASE COUNT          803 a          818 c         1036 g          799 t
ORIGIN      
        1 cacctatatg attattcccg aaatcgccat taatttgggc tgcgtattac cgtatcacgg
       61 ctcttatttt gctgcggcgt cgctggtaga gcctatgtgc tgcattattg gtgcttatca
      121 tgccaattat cacaccacgc aatatgttta tgagcatcgc atgggcgtca aacctggcgg
      181 caatattgca ctgctggcgt gtgcgggtcc gatgggcatt ggcgctatcg attacgccat
      241 taacggtggc atacaaccgt cacgggtggt ggtggtcgat atcgacgaca aacgcctggc
      301 gcaggtgcag aagctgctgc cggtggatct ggcggccagt aaaggcattg agctggtgta
      361 tgtgaatacc aaagggatga gcgatccggt ccagacgctg cgggcgctga caggagatgt
      421 cgggttcgat gacatttttg tttatgcggc ggtgccagct gtcgttgaga tggctgacga
      481 attactggcg gaagatggct gtctgaactt ctttgccggg ccgacggata aaaacttcaa
      541 agtgccgttt aatttctaca acgtccatta caacagcacg cacgtagtcg gtacatccgg
      601 cggttcaacg gacgacatga aagaggcgat tgcgttaagc gccacggggc agttgcagcc
      661 gtcctttatg gtcacgcata tcggtgggct ggatgcggtg ccagataccg tgctcaatct
      721 gccggatatc cctggcggta aaaaactcat ttataacggc gtgaccatgc cgctcactgc
      781 cattgccgat tttgccgaaa aaggcaaaac cgatccgcta tttaaagagt tggcgcggct
      841 ggttgaggaa acgcacggca tctggaatga acaggccgag aaatatctgc tggcacaatt
      901 tggcattgat atcggggagg ccgcgcaatg atgtccctgg cgtggccatt atttcgcgtt
      961 acggaacagg cagcgttggc tgcctggccg caaaccggat gtggcgacaa aaataaaatt
     1021 gatggcctgg cggtcaccgc gatgcgccag gcattaaacg acgtcgcttt tcgtggacga
     1081 gtggttatcg gcgaaggaga aattgaccat gcgccgatgc tgtggattgg cgaagaggtg
     1141 ggcaaaggcg atgggccaga agtcgatatc gcggttgatc ctattgaagg cacgcggatg
     1201 gtggcgatgg ggcagagcaa tgcgctggcg gtcatggctt tcgcccctcg ggatagcctg
     1261 ttacatgcgc ccgatatgta tatgaaaaag ctggttgtta atcgactggc tgccggggtg
     1321 attgatctgt ctttgcctct ggcggacaac ttgcgtaacg tggcgcgggc gttaggtaaa
     1381 ccgctggaca agctgcgcat ggttacgctg gataaaccgc gcctgagtgc cgcgattgag
     1441 gaagcaacac agctgggcgt gaaggttttt gccctgccgg atggcgatgt cgccgccagc
     1501 gtgctgacct gctggcagga taatccttac gatgtgatgt acaccatcgg cggtgcgcca
     1561 gaaggcgtga tttctgcctg tgccgttaaa gcattaggcg gggatatgca ggccgagctg
     1621 attgactttt gtcaggctaa aggggattac acggaaaatc ggcagattgc agagcaggag
     1681 agcaagcgtt gcaaggcaat gggcgttgac gttaaccgtg tgtactcgct cgatgaactg
     1741 gtgaggggga acgatatcct ctttagcgct acgggcgtga cgggcggcga gttggtgaac
     1801 ggtatccaac agacggcgaa tggggtgcgg acgcagacat tactgatcgg cggcgcggac
     1861 caaacgtgta atataataga ctccctgcat tgatggtgat ctatcggaag accaatagcg
     1921 aagctgacag aagatgatgt gcttgagcaa ctggatgcac aggacaattt attttcattt
     1981 atgaaaactg cgcattctat tttgctccag gggatacgcc agtttctgcc gtcgctgttt
     2041 gtcgataacg atgaagagat cgtggaatat gcagtgaagc cgttactcgc ccaaagcggc
     2101 ccgcttgacg atattgatgt tgcgctgcgt ttgatttatg cgctggggaa aatggataaa
     2161 tggctgtacg ccgatatcac gcatttttcc cagttctggc attacctgaa cgaacaggat
     2221 gaaacgcccg gatttgccga tgacatgacc tgggatttta tcagcaacgt caatagcata
     2281 acccgcaatg cgatgctcta tgacgcgttg aaagcgatga agttcgccga tttcgccgtc
     2341 tggtcagagg cgcgttttag cgggatggtc aaaacggcgc tgacgctggc agtaacgaca
     2401 atcttaaagg aattaacgcc gtgaaaattg aattaacggt gaatgggctg aagatacagg
     2461 cacagtacca gaacgaagag attgaaaatg tacataaacc gttgctgcgt atgctggcgg
     2521 ccttacagac ggtaaatccg cagcggcgta cggtggtttt tctttgcgct ccgccgggga
     2581 cgggtaaatc taccctaacc accttctggg aatatctcgc gcaacaagac ccggagctgc
     2641 ccgctattca gacgctcccg atggatggtt ttcaccatta caatagctgg ctggacgcgc
     2701 atcaattgcg ccccttcaaa ggcgcaccag agacatttga cgttgcgaaa ctggcggaaa
     2761 atctgcgcca ggtggtggaa ggggattgta cgtggccgca gtacgatcga caaaagcatg
     2821 atcctgttga agatgcgttg cacgttaccg caccactcgt catcgtcgaa ggaaactggt
     2881 tgttgctgga cgacgagaag tggtgccagc ttgcgcaatt ttgtgatttc tcgatcttta
     2941 tcaacgcgcc agctactgcg ttgcgggagc gtctggtggg gcgcaagctg gcgggagggg
     3001 tatcgctggc agatgcagaa gccttttatg accgtaccga cgggccgaat gttcgccggg
     3061 tgctggaaga gagtctgcct gcaaatttga ccttaatgat gaccgctacg ggtgaatatc
     3121 gtctggtgga ttaacgttcc tgattacacc atcttccagt cgcaccacac gagagaaatg
     3181 acgccgggta aatgcggcgt catgactgat tgctaccacg ctcgtgcctc gctggcggca
     3241 cttctccagc cagctttcaa acacgctcaa ccaattttcg tcaaaatccc gactcggctc
     3301 gtccagcagt aatagtggcg gagagagtgc ttccaggcag gcgacggcga ccatccgtcg
     3361 ctgcgcacta tgcagatcca acgggtgcga gttggcagtg tctgctaact gacaacattg
     3421 cagggcagca tgggtacgtt gagtgatttc atccgc
//
LOCUS       DAJVUN010000272         3428 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.277, whole genome shotgun sequence.
ACCESSION   DAJVUN010000272 DAJVUN010000000
VERSION     DAJVUN010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.277"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            56..667
                     /locus_tag="OQQ76_003943"
                     /pseudo
     CDS             56..667
                     /locus_tag="OQQ76_003943"
                     /inference="COORDINATES: protein motif:HMM:TIGR02675.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
     gene            1199..3018
                     /locus_tag="OQQ76_003944"
                     /pseudo
     CDS             1199..3018
                     /locus_tag="OQQ76_003944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001415540.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
     gene            3011..3352
                     /locus_tag="OQQ76_003945"
     CDS             3011..3352
                     /locus_tag="OQQ76_003945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970242.1"
                     /translation="MAEIKTLHLVPREGMQVSEKPSVARVRFGDGYEQRRPTGLNARL
                     KTFQAVFRVTDEATRRWLEEFLSWHGGYRAFLWRPPKHNRTVRVVCREWSVTDNARYS
                     DFSCTIEQVVN"
BASE COUNT          815 a          785 c         1154 g          674 t
ORIGIN      
        1 caaaatttcg gcaaattcac agtcattcca gtcggagatc cagcgggcgt cccgtatggg
       61 cagtgaatat taccggaccc tacagaatgg cggacgtcat gccgctgctg ccgcacggga
      121 acagcgccgc gcccttgcag aactgaacag tcagttgacg gaaattcgcg gttctgctgt
      181 cggaatggct ggcgcatttg ccggtgcctt tgccaccgga cacctgattt cgctggccga
      241 tgagtggggt tccgtgaatg cccgtctgaa acaggcatct cagtcatcgg atgaattctc
      301 gtcatcacag aaagtgctga tggatatcag tcagcgaaca ggtaccgcgt tttcggataa
      361 tgcggccctg tttgcccgtt cggctgcctc gatgcgtgaa tatggttaca gtgctgatga
      421 tgtgctgaag gtgacggagg ccatttcgac aggactgaaa ctgtcagggg ctggagttgc
      481 ggaatccggt tcggtgatca cccagttcag ccaggcactg gcacagggtg tactgcgtgg
      541 cgaagaattt aatgctgtta acgaaaatgg cgaccgggtg atccgcgcgc ttgctgcggg
      601 gatgggtgtg gcccgtaaag atctgaaggc aatggcggat gacggaaaac tgacagcgga
      661 taaagtggtc cctgcgttaa tcagccagct ggggatatta cgtgatgaat atgcggccat
      721 gccggaaacg gtttccggta gtatcacgaa ggtggaaaac gcctttatgg cctgggtggg
      781 cgaagtgaat gaggcctgcg gggtgacaaa aacgctctcc ggcgtgctga acggtgttgc
      841 cggacagatt gataatgtgg caacagctgt gggggcgctg gttgccgtcg gggttgcccg
      901 gtactttggc aatatggcct ccggagcgat gtctgccaca gcaggacttg tgacggctgc
      961 acgtaatgaa gttgcactgg cggaagcaca gttcagggga acgcagattg ccacggcgcg
     1021 ggcaagggca gccgtgtacc gtgctcagca ggccgtggcg gcagcccgcg ggacggagat
     1081 gcagattgct gcagaggccc gtctggcggc cacacaggaa cgcctgaaca gaaatattgc
     1141 tgccagaagc gccgcccaga atgcgctgaa cagtacaacg gcggtgggct cacgtctgat
     1201 gagcggtgcg ctggggctgg ttggtggcgt acccggactg gtgatgctgg gggctgcagc
     1261 atggtacacg ctgtaccaga atcaggagca ggcctgggag tctgcgcgcc agtatgcact
     1321 gacgatagat gaaatcgcgc ataaaacgcc gtcaatgtct ttgcctgaag cctcagataa
     1381 tgaaggacga acacgggcgg cgctgacaga gcagaaccgg ctgattgatg aacaggctag
     1441 tcgggtgaaa tccctgcagg aaaaaatcgc agaatatcag tatgttctgg cgaacccggg
     1501 ctggacgacc gtcgtgtggc gttaattcgt cagcaggcgg cagagcagaa taaggtgtac
     1561 cagtccatgc tggttatgaa cggtcagcat acggaattca accgtctgct ggggctgggt
     1621 aatgaactgc ttcagcagcg gcagggactg gtgaatgtgc cgttacggct gccacaggcc
     1681 actctggatg ataaacagca gagtgccctg acaaaaacag agcgtatccg actggggtat
     1741 gcggcggatg acctcggttt tgtgggtgat ccgtatcagg aggcgagaca acgttatatc
     1801 agtaatgccc tggaagcctg gcgcaataac gaggcgaata aacccaaatc ccggggtgga
     1861 aaatcagaga cggaaaaagc ggaagacagt ttttcccggc tgctgaagca gcagaaagag
     1921 caactggcac tggcggggca gaatacagag ctggcgaagc tgaaatacca gactgcgcag
     1981 ggcgaactga aaaccctgac ggagatgcag aagcaggaac tgctgcgcaa tgcggccctg
     2041 attgaccagc aaaaaatccg ggagcagttg cggtcccggg aagagaccct gaagaatgat
     2101 aatgtggctg cgcgtgcatc aaatgaagcg gaactgctgg ggtacgggca gggagagcgg
     2161 ctccgtgaac gcatgcggga gttgcagcag atccgcgaca gtttccgcca gaaggatgcg
     2221 gaccttcagt ctcagtatca gaccggggat atcagtgagg atttttacag acaggctctg
     2281 gcacagaacg cgcagtatct gagtgaacgt ctgaaagagc aggaagcctt ttatgccgaa
     2341 tcggatgtgc agcgtgcgga ctggcagaaa gggctgcagg agggattcag taactgggtg
     2401 gataatgcgt ccgattacgc ctcacaggca gtacagcttg cgacggaggg tatctcaggg
     2461 atggtgaata acatcacgga gatgctgaac ggaaataaag tggaatggcg cagctgggcc
     2521 tcatcagtgc tgcaggaaat atcaaaagtt cttatgaatg ccgcgattgt caacgggatc
     2581 aagacggcgg caaacagtat gtccggagcg ggaggattta tcggcagtat tggtagctgg
     2641 ctgggcggtg cggtggccaa tgcaaaaggc ggtgtgtata cctcggcaaa cctgagtgcg
     2701 tacagcaaca gtattgtgga tacgcccacg tactttgcct ttgcaaaagg ggcgggactg
     2761 atgggggagg ccggtcctga agccattatg cccctgaccc gggcggcgga tggctcgctg
     2821 ggtgtgcgag cggtgggcag tatgaacggc agtgcaggtc tggtgtattc cccggtctac
     2881 catatcgcca ttcagaatga cgggactaat ggccagatag ggccggaagc tgcgggcagc
     2941 cttgtgcaac tgattgacca gcgggtgcag gcggtgatgc tgtccatgcg acgtgacgga
     3001 ggaatgctga gtggctgaga taaaaacgct gcatctggtc ccgcgtgaag ggatgcaggt
     3061 gagtgagaaa ccgtcggtgg cgagggtacg gtttggtgac ggttatgaac agcgccgccc
     3121 gacgggactt aatgcccgac tgaagacgtt tcaggcggtg ttccgggtga cggatgaggc
     3181 gacccggcga tggctggaag agtttttatc gtggcatggt ggttaccgtg cctttttgtg
     3241 gcgaccgccg aaacataacc ggacggtgag ggtggtatgc cgggagtgga gcgtcacaga
     3301 taacgccagg tacagtgatt tcagttgtac gattgagcag gtggtgaact gatgcaggat
     3361 attcacgaag aaagtctgag ctagtcggtt aaatcagagc agtcaccgcg ggtggtactc
     3421 tgggaaat
//
LOCUS       DAJVUN010000273         3385 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.278, whole genome shotgun sequence.
ACCESSION   DAJVUN010000273 DAJVUN010000000
VERSION     DAJVUN010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3385
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.278"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(18..176)
                     /locus_tag="OQQ76_003946"
     CDS             complement(18..176)
                     /locus_tag="OQQ76_003946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970243.1"
                     /translation="MTGTLLGLELRKRKTPQEKIAIIQQTMEPSMTVSHVARLHGIQP
                     SLLLKWKK"
     gene            complement(291..929)
                     /gene="ospI"
                     /locus_tag="OQQ76_003947"
     CDS             complement(291..929)
                     /gene="ospI"
                     /locus_tag="OQQ76_003947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspI"
                     /protein_id="HCS1970244.1"
                     /translation="MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSE
                     LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
                     DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
                     VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
     gene            complement(1088..1585)
                     /locus_tag="OQQ76_003948"
                     /pseudo
     CDS             complement(1088..1585)
                     /locus_tag="OQQ76_003948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558264.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(1585..3186)
                     /locus_tag="OQQ76_003949"
     CDS             complement(1585..3186)
                     /locus_tag="OQQ76_003949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISSfl3 family transposase"
                     /protein_id="HCS1970245.1"
                     /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
                     DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
                     PSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
                     DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
                     LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
                     APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA
                     YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
                     PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
                     WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE
                     VIEKLNDWPSNQVHELLPWNFSSVK"
     gene            complement(3206..>3385)
                     /gene="tnpB"
                     /locus_tag="OQQ76_003950"
     CDS             complement(3206..>3385)
                     /gene="tnpB"
                     /locus_tag="OQQ76_003950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1970246.1"
                     /translation="LWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGI
                     AWQHPKRTERPGIRI"
BASE COUNT          802 a          906 c          732 g          945 t
ORIGIN      
        1 agacttcctt ccagatatta ttttttccac ttaagcaaca ggctgggctg aataccatgc
       61 aaacgcgcca catgggacac cgtcatgcta ggctccattg tctgctgaat aatggcaatt
      121 ttttcctgag gagttttacg tttacgaagc tccagcccca gcaaagttcc agtcatctca
      181 aaattagaac tagtgttaga catatatcca agcctatctc ttattttaag atacatccac
      241 tgtctggcgt ttcaaggggc cggctcaaat ctatgtacag gctctcagca tcagcaaagc
      301 ctcttactct tccaactact actgttagca tagtgatcaa attcctgatc agatacatga
      361 attacctgaa ccgaactatt ttcatctaca aatgcatctg gcgatttttc tacaggatca
      421 taaagattaa atccctttcc tgtttgaaca tccaaaaaca taattttttc accatcgtta
      481 aatccagcta tccaatgagt ggcctgttca atagaaatca ttactacact tccttttgaa
      541 gtgttttgta aaatattttc tgcaatacgc tcacgaaatt tactataagt ttcattagga
      601 tgtgacacta tgccttcact atcaatttgc tctaaatgcc tatgaaaaaa tccggtcata
      661 tactctgata tttcattagg tacgggagcc tctcttactc cataccctaa catagccata
      721 caagcatgaa gcgcacaccc tgaacagtta ccatccccac cagacggatt tatcattttc
      781 tgtaaagtcg ctgccaattc agaatcttta tccatatcac caagactttt agagtttaaa
      841 gattccagca attttttaac atttacattt ccctcctctg tatgtgcctc atatccagca
      901 gttccctgta acgacacccc attaatcata ttgtatcctg acagtatata tactcactat
      961 attttcttca taacaaatat ccctctgata tgacaacaaa aaacggagcc ggattcctgt
     1021 ttttgtgaac tgcagctatt cgagtctaaa aagtgatcca cttaccacca acggcctaat
     1081 atatacagaa cggagtaaac agggctaaca gttcccgata ggtctcatca ttccgtggcc
     1141 cgaaagtgta agccaacaca ccgccagttt tagtgttgta cgcataccag agccagtgtt
     1201 gttgcagcct tgctgccgac gaagcgccac tgctcatcaa gttcacagat aagggcaaca
     1261 tcagcgtgag cgactggcgc agatgttatc cgccggggcg ggagcttttt aatgtccgta
     1321 tgacggtatt gatgccgatt ttcagtgtcc tggcagtatc acggccccct gcgccgttat
     1381 gtgccatttc aacgatctgc tccttaacgc cgggttttct ggcttcataa gagtaagtga
     1441 gctggaaaac acgtttacat gagcgacaac ggaaacgctc atgccgggaa caactacggc
     1501 catgtcgata aacttcatcg gaattacagc gcggacaatg aacagtaacg gtgtaagcgc
     1561 cccgagaagt acgtagcgta aggattattt tacagacgag aagttccagg gcagcagttc
     1621 atgcacttgg ttcgacggcc agtcattgag cttctcgatc acttcgcgca accagtcctc
     1681 cggctccact tcgttctgtt tgcaggtgac cagcagactg tagatgatcg ccgcactttc
     1741 tcctcccttg tctgagccga aaaagagata attttttctt ccaaccgcca ccgatcgtaa
     1801 cgcgttttca ccgatgttgt tgtctatttc cacccagccg tcacgacaga actcgttcag
     1861 cgcattccag tgattcagga tatagtcgaa cgccttcgcc atctccgcat gtttcgacag
     1921 cgttttcctc tgcaactgta tccagtcgta caatgactgc atcaactgga cgcttctggc
     1981 ttttctgact gcaagccgtt cctctgccgg actgccacgt atctccgctt ctatgtcgta
     2041 taactctgct atccgtctga gcgcttcctg agtcatttct gtcggacggc gcacatcctc
     2101 gtcatggatt tttcggcggg cgtgggcaag gcacccggct tccttcaccc ggcccgtttc
     2161 gtacagtacg ttataacctg cataggcatc agcctgcagt acgccctgat actttgccag
     2221 gtggagctgc ggatgttctc ctttgcgatc tgccgaatac gcgaaccaga cggctgccgg
     2281 cagggatgaa cccgcattac gatcatccct gacgtatacc cacagacgac ccgttttcgt
     2341 ctttccgttc cccggggcca gtactttcac cggagtgtca tctgcgtgca cctttcctgc
     2401 ctccagaaca tagtcattca gcgctatata cagaggacgg agtttgtctg ccatttctga
     2461 tacccagcgc accatggtat tacggctcag ctccacgccc tgtcgcgcgt atatttctga
     2521 ctggcgatat aaagggatat gttccatata tttgctgacc aggatccgtg caagtaaccc
     2581 tgcactggca taaccgcgtt cgatcggttt agggggaagt ggtgcctgaa cgatgacatc
     2641 acaccggcta caggccagtt tgggacgtat ggtttcgata actttaaagg cggtattaat
     2701 gatatccagt tgctctgaga ttgtttcccc catttctttc agaacacctc cacaggccgg
     2761 gcaactggtt tcagcaggca gaaggcgatg tgtctcccgg ggaagttctg ccggcagcgg
     2821 ttttcgtgaa gattttcgtc ccggggattc aggcttactg gcgatcgggt tttctgacgg
     2881 gggactggtg tcaggtgaat ctgtgactga cgatgcatct tccagaagat ttctggctgt
     2941 gttcagtcgg ttttccagtt ccgacagtcg tttttctgcc tgtcggatct gattttcaag
     3001 cttatgacgc tttttctctg aactctggcc gaacagcata cgacgcaacc tgtcgagttg
     3061 cgctttcagc cgttcaattt cctgctcata gcccgcgacc tgacaggcat actgtcgaag
     3121 ccgactctgt tgcttacgca acatggcttt aagcagctca atatcatcgg ggagttcatt
     3181 gttcattccc ttgttttatc acgggttata tccggatgcc aggccgttct gtccgtttgg
     3241 gatgttgcca cgcgatcccc tccagtagca tggataactg agctggcgtc aggtgcactt
     3301 tcccttcccg ggtcaccggc cagacgaagc ggccccgttc caggcgtttg gcgaacaggc
     3361 ataacccgtc acgatcggcc cacag
//
LOCUS       DAJVUN010000274         3370 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.279, whole genome shotgun sequence.
ACCESSION   DAJVUN010000274 DAJVUN010000000
VERSION     DAJVUN010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.279"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            2..77
                     /locus_tag="OQQ76_003951"
     tRNA            2..77
                     /locus_tag="OQQ76_003951"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:35..37,aa:Thr,seq:ggt)
     gene            117..232
                     /gene="rrf"
                     /locus_tag="OQQ76_003952"
     rRNA            117..232
                     /gene="rrf"
                     /locus_tag="OQQ76_003952"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(464..1222)
                     /locus_tag="OQQ76_003953"
     CDS             complement(464..1222)
                     /locus_tag="OQQ76_003953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HCS1970247.1"
                     /translation="MSQILLQPANAMITLENVHKWYGQFHVLKNINLTVQPGERIVLC
                     GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERIRQEVGMVFQHFNLFPH
                     LTVLQNCTLAPIWVRKMPKKEAEALAMHYLERVRIAEHAHKFPGQISGGQQQRVAIAR
                     SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI
                     FMDRGEIVEQAAPDEFFTHPKSERTRAFLSQVIH"
     gene            complement(1230..2333)
                     /locus_tag="OQQ76_003954"
     CDS             complement(1230..2333)
                     /locus_tag="OQQ76_003954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709065.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HCS1970248.1"
                     /translation="MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL
                     MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL
                     ALLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
                     LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML
                     PLFMAEGTSIDKLIRVLVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKNQ
                     GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG
                     YVFAALIYWIFCFSMSRYSQHLEKRFNAGRTPH"
     gene            complement(2343..3370)
                     /locus_tag="OQQ76_003955"
                     /pseudo
     CDS             complement(2343..3370)
                     /locus_tag="OQQ76_003955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026209.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
BASE COUNT          941 a          880 c          819 g          730 t
ORIGIN      
        1 tgctgatatg gctcagttgg tagagcgcac ccttggtaag ggtgaggtcc ccagttcgac
       61 tctgggtatc agcaccactt tttaggttaa agttcggcaa attagaaaag aatttgtctg
      121 gcggcagtag cgcggtggtc ccacctgacc ccatgccgaa ctcagaagtg aaacgccgta
      181 gcgccgatgg tagtgtgggg tctccccatg cgagagtagg gaactgccag acatcaaata
      241 aaacaaaagg ctcagtcgga agactgggcc ttttgtttta tctgttgttt gtcggtgaac
      301 actctctcga gtaggacaaa tccgccggga gcggatttga acgttgcgaa gcaacggccc
      361 ggagggtggc gggcaggacg cccgccataa actgccagac atcaaatcaa gcaaaaaggc
      421 catccgaaag gatggccttt ttgcttttcg aactaacatt caattaatgg attacctgcg
      481 ataaaaatgc cctcgtacgc tctgatttag gatgcgtaaa aaattcatca ggtgcagctt
      541 gttccactat ctccccacga tccataaaaa ttacccggtc agcgacggta cgtgcaaacc
      601 ccatctcatg tgttacacac aacattgtca tacccgactg cgccagccca atcatcgtat
      661 ccagcacctc tttcaccatc tccggatcga gcgccgacgt tggttcatca aacaacataa
      721 ttttcggctt catacacagc gaacgcgcaa tggcaacgcg ttgctgctga ccacctgaaa
      781 tctgtccggg aaacttatgc gcatgttcgg caattctcac ccgctcaagg taatgcatcg
      841 ccagagcttc agcctctttc ttaggcatct tgcgtaccca aatcggtgcc agggtacagt
      901 tctgtaaaac ggtcagatga gggaagagat tgaaatgctg aaataccatt cccacttcct
      961 gcctgatgcg ctcaatattg cggatatctt cattaagttc gatgccatct acgacaatcc
     1021 gtccctgttg atgttcttcc agatgattaa tacaacgaat ggttgtcgat ttaccggaac
     1081 cagaagggcc acacagaacg atccgttctc ccggttgcac ggttaaattt atatttttca
     1141 aaacatggaa ttgtccatac catttatgga cgttttccag cgtaatcatc gcgttagcag
     1201 gttgcagtaa aatttggctc atagtgtcct caatgcggtg tacgcccggc gttaaaacgt
     1261 ttttccagat gttggctata acgtgacatg ctgaaacaaa agatccagta gatcagcgcg
     1321 gcgaaaacat acccttccgt cgacataccc aaccaggcgg gatcaacggt tgcctgctga
     1381 acgctactga aaagatcgaa caagccgatg atgatcacca ggctggtatc tttgaagagt
     1441 gcgatgatgg tatttaccag cccaggaatt accagcttca acgcctgtgg cagaataacc
     1501 agcccctgat ttttccagta ccccaacgcc agcgactctg ccgcttcata ttgcccttta
     1561 ggtagggcct gtaatccgcc tcgcacgact tccgcaacat atgctgactg aaacaggatc
     1621 acgccaacca gcacgcggat cagtttgtcg atactggtgc cttctgccat aaacaacggc
     1681 agcatgaccg aagacataaa caatacggta atcagcggta cgccgcgcca gaactcgata
     1741 aaaatgaccg ataagatacg cacaatcggc atatgggagc ggcgacctaa cgccagtaag
     1801 atcccccacg gtagcgcccc cgcaatccca acggatgcaa taattaaagt tagcgtcagc
     1861 ccgccccatt gccgggtttc aacccgctca agaccaaaaa aaccgccata catcagccac
     1921 cagacaatca gtgggtaaat caccgcccag accgcaatat agcgaccgcg atgcgggagt
     1981 attttccaga acattggtgc gattgacaca aggccaatca gtaatgccag gttaattcgc
     2041 cagcgttggt cgtgtgggta aagtccatac ataaactgac caaatcgttc gtggatgaag
     2101 acccaacagg caccggcttt tgtgcagtcg gcacgcgttg agccaaccca gttagcctgc
     2161 aaaaatgccc agttcagcaa cggtgggatc agttcccaca tcaaccatat gcagccaata
     2221 gtcagcaggc tattgctcca gctggagaac agattttttc gcacccacac catcgcgcgg
     2281 cttgagttat ggctcgctgg gcgcgagggc tgagacagca atacttttgt catcatgact
     2341 ccttagcgtt caacgatcgc gatgcggcgg ttatagatat tcatcagcag cgagatagtc
     2401 aggctgataa tcagatagac cgacatggtc atggctatcg tctcgatggc ttgccccgtc
     2461 tggttcagca cggtgccagc aaacagcgaa accatatcgg gatagccaat agcggcggca
     2521 agagaggagt ttttgacgat gttgagatac tggctggtta acggcggaat aatcactcgc
     2581 agtgcctggg gaataatgac ctggcgtagc gtaaccccag tgaccgagcc gcttcatgtt
     2641 gaccataagg cactgcctgg atcccagcgc ggataatctc ggcgataaat gcagaggtat
     2701 aaaccgaaag tgccagcgtt aaggctgcca gttcaggaat taaaaccatt ccgccgcgga
     2761 agttaaagcc tcgtagggct gggacatccc agtgtagtgc tgcgccaaaa agccattgcg
     2821 ccagtaaagg caaaccgatg atcaacactg cggcgaacgg ccaggtgcgg cgcagttgtc
     2881 cggtctttat ctggtatgtt ttattaaagc ggaatagccc aacagaaagg actatagcca
     2941 taacaacagc caggataaac gcaataaatc cgtctcccag ctgcggtgac ggaatataaa
     3001 gcccacgatt gctcaaaaag gccagatcaa acgcgctcac agcctggcgc gtggtccggg
     3061 caaattgcgc aacacggcaa agtaccagaa gaagatttgc agcagcgggg gaatattacg
     3121 gaagatctca atataaattg tggatagctt tcgtagcagc cagttatccg aaagtctcgc
     3181 cagaccgata aagaagccta aaacagaagc gaacacaata cacaatgcag aaaccagtag
     3241 cgtattgagt aagccgacaa taaaaacgcg tccgtaggtg tcgccctgct ggtaatcgat
     3301 caaatgctgg acaataccga agccagcgcc gcgatccaga aaggcaaaac ctgaagtaat
     3361 gccacgatta
//
LOCUS       DAJVUN010000275         3332 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.280, whole genome shotgun sequence.
ACCESSION   DAJVUN010000275 DAJVUN010000000
VERSION     DAJVUN010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.280"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..216)
                     /locus_tag="OQQ76_003956"
     CDS             complement(<1..216)
                     /locus_tag="OQQ76_003956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970249.1"
                     /translation="MKPTTLLFIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKI
                     CTPQASLSDEAWEKLMLSDENNKQHIRE"
     gene            438..1256
                     /gene="nlpA"
                     /locus_tag="OQQ76_003957"
     CDS             438..1256
                     /gene="nlpA"
                     /locus_tag="OQQ76_003957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpA"
                     /protein_id="HCS1970250.1"
                     /translation="MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQ
                     DVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGY
                     KLVAVGNTFVFPMAGYSKKITTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKE
                     GKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDS
                     VFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW"
     gene            complement(1283..2182)
                     /locus_tag="OQQ76_003958"
     CDS             complement(1283..2182)
                     /locus_tag="OQQ76_003958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HCS1970251.1"
                     /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRL
                     IFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATA
                     TVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSLSPAALF
                     WGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLI
                     LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDW
                     LGTLLILSSVILISMDSRRRPEK"
     gene            complement(2293..>3332)
                     /locus_tag="OQQ76_003959"
     CDS             complement(2293..>3332)
                     /locus_tag="OQQ76_003959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1970252.1"
                     /translation="IMVGFFFTGSAIMGILVSQFLARHSDKQGDRKLLILLCCLFGVL
                     ACTLFAWNRNYFILLSTGVLLSSFASTANPQMFALAREHADRTGRETVMFSTFLRAQI
                     SLAWVIGPPLAYELTMRFSFKVMYLTAAIAFVVCGLIVWLFLPSIQRNIPVVTQPVEI
                     LPSTHRKRDTRLLFVVCSMMWAANNLYMINMPLFIIDELHLTDKLAGEMIGIAAGLEI
                     PMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASVLMATTPAVELELQILNAIFLGILCG
                     IGMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSYHALFWLAIGMLGI
                     AMICLLFIKDI"
BASE COUNT          996 a          764 c          772 g          800 t
ORIGIN      
        1 ctcgcgtata tgttgtttat tgttttcatc tgacaacatt aacttttccc acgcttcatc
       61 tgataatgac gcctgtggcg tgcaaatttt acgtaaatct tgtaataccg tggttttctc
      121 ttttgcggac tgcagtgagc taaaaggcga ctcggcgtat acgatgcctg gcatagcgaa
      181 aaaagtgaaa ataaacagta gtgtcgttgg tttcatggat tcaacctttt acaaatgtgt
      241 atcgaatgaa gcataagtgt agtttgcttt catcgctctc atcatgctgt acgaaacgcg
      301 cttgcgtggt cagtaagaag tgccagactt tatattccac ttttattcct ttttattctt
      361 atcgatagcg tttcgttttt taaaccgcag cgaccttacc gctatagtca ggtaatcatt
      421 aataaaagga taaaaaaatg aaactgacaa cacatcatct acggacaggg gccgcattat
      481 tgctggccgg aattctgctg gcaggttgcg accagagtag cagcgatgca aaacacatta
      541 aagttggcgt tataaatggc gcagaacaag atgtcgcgga agtcgctaaa aaggtggcaa
      601 aagagaaata tggcctcgat gttgaactgg taggatttag cggttcgttg ctaccgaacg
      661 atgcgacaaa tcatggcgaa cttgatgcga atgtcttcca gcatcgaccc tttcttgaac
      721 aagataatca ggcgcatggt tataaactgg tagcggtggg aaatacgttt gtcttcccta
      781 tggcgggtta ttccaaaaaa atcacaaccg tggcgcaaat aaaagaaggc gcgacagtgg
      841 cgatccccaa cgacccgacc aaccttggtc gcgcactttt actgttgcaa aaagagaagc
      901 taattactct gaaagaggga aaagggttat tacataccgc gctggatata accgataatc
      961 ctcgtcattt gcagattatg gaactcgagg gggcgcagct tccgcgcgta ctggatgatc
     1021 ccaaagttga tgtagcgatt atcagcacca cttacattca gcagacaggg ctttctccgg
     1081 tgcacgacag cgtatttatt gaagataaga attcgccgta tgtgaatatt ttggtggcac
     1141 gggaagataa taagaatgca gaaaacgtga aggaatttct gcaatcttat caatcacccg
     1201 aagtcgctaa agcggcagaa accattttta acggtggcgc ggtgcctggc tggtaattct
     1261 cactcatgcc gcgccggacg atttattttt ctggccggcg acgggaatcc attgaaatca
     1321 aaatcaccga tgacagaatc agcagcgttc ccagccagtc cggtaatgtg aacgtgatcc
     1381 ccagcaacag caaagagagt agcgcgctac ttaatggttc tgcacagctc aaaatgctgg
     1441 cttttggacc gccaattaat tgtgctcctt tcaggtacag actaaatgtc agggacgtac
     1501 caatgaccac caaataaaaa aacgccagaa tcaaactgcc gttaacgaca aagtttgttc
     1561 cttgtctggc ataaaaaggc aacagaatca gaccgccaat cagcatactc cagccgacga
     1621 ctggtaacgt gccatagcgg gcaattagcg ttgagggata ggtggtatag aatgcagcag
     1681 caaatgccga ggcaatgccc cagaacaacg cggcaggaga gagcgataat gacgtcggat
     1741 taccgtgtgt caccaataaa aaagtcccga ccagcgatgt caaaatagcg cagaaaacca
     1801 gaatgcccgg gcgcgattta cgcaccagtg agaaccaggc gacgataatc gtcggtgaga
     1861 ggaattgcag caccgttgcc gtggctgcgt tcgatttttc gatggttagc aaaaaagtga
     1921 gctgtacagt tagcgcgcca accacggaaa aaatcagcag gctaatggca tctttatgat
     1981 tgttaataat agaaaagatt ttatcgccat gaacaaatga cagcgtcagt agaatcaaac
     2041 cggcgaatat caaacgcgtc atagtcaaaa actgcgacga catctggctt tgctccatga
     2101 tgtattgcgc gcagacccct gaacttcccc acaacacggc ggcaatcaga acgttcagca
     2161 tcccctttct ggtggaaccc atttttccct ctgcatactg ttttgtcgtt tatgtatgca
     2221 ggcatgatag caaaaatggc gaggatggct ctgtttgcgc cacgccgatt tttcttagcc
     2281 cagactggtg agctaaatat ctttaataaa cagcaggcaa atcatcgcaa tacccaacat
     2341 ccctatcgcc agccagaaca acgcatggta gctccagatt tcaaccataa ttccgtcaac
     2401 agagccggcg ataatccagc cgacgcgtga agtatttgca tataacgttg tcgcagagcc
     2461 tattttttca ggcatcaagt cctgaaaata aagcatgccg ataccacaga gaataccaag
     2521 gaagatggca tttagaattt gcaattccag ctcaaccgcc ggagtcgtcg ccatgagtac
     2581 gctggcgtaa aaacacatac cactcacgat agcaatgagc attaatagtc gcttgccaat
     2641 acgtttcatg taatagcctg cgattaacat catcggaatt tccagaccgg cagcgatacc
     2701 aatcatttct ccagccagtt tatcggttag atgcagttca tcaataataa atagcggcat
     2761 atttatcatg tagagattat tcgccgccca catcattgaa cagaccacaa aaagtagccg
     2821 cgtatcccgc ttcctatggg tggagggtaa aatttctacg ggttgggtaa cgacaggaat
     2881 atttctttgt attgatggca aaaacaacca gactatcagc ccgcaaacaa caaatgcgat
     2941 ggcagcggtg agatacatca ctttaaaact aaacctcatt gtcagttcat aagcgagcgg
     3001 tggcccgata acccaggcaa gcgagatctg agcacgtaaa aatgtactga acatgaccgt
     3061 ctcacggcct gttctgtcgg cgtgttcacg ggcgagggcg aacatttgcg ggtttgcggt
     3121 agaagcaaaa ctactcagaa gtacgcccgt agagaggaga atgaagtagt tgcgattcca
     3181 cgcaaaaagc gtgcaggcca gcactccaaa taagcaacat agcagaatca gtaatttacg
     3241 gtcgccttgt ttatcggagt gccttgccag aaattgactg accagaattc ccataatagc
     3301 gctaccggtg aagaaaaaac ctaccattat ag
//
LOCUS       DAJVUN010000276         3325 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.281, whole genome shotgun sequence.
ACCESSION   DAJVUN010000276 DAJVUN010000000
VERSION     DAJVUN010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3325
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.281"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..295
                     /locus_tag="OQQ76_003960"
     CDS             <1..295
                     /locus_tag="OQQ76_003960"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310880.1"
                     /note="capsular polysaccharide biosynthesis protein;
                     catalyzes the formation of D-mannose 6-phosphate from
                     alpha-D-mannose 1-phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphomannomutase CpsG"
                     /protein_id="HCS1970253.1"
                     /translation="KTLGKLVRDRMAAFPASGEINSKLAQPVEAINRVEQHFSREALA
                     VDRTDGISMTFADWRFNLRSSNTEPVVRLNVESRGDVPLMEARTRTLLALLNE"
     gene            350..1744
                     /gene="wcaJ"
                     /locus_tag="OQQ76_003961"
     CDS             350..1744
                     /gene="wcaJ"
                     /locus_tag="OQQ76_003961"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HCS1970254.1"
                     /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF
                     LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFN
                     NDFDTQLKIWLAWYGLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLM
                     ESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGA
                     RVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRA
                     EDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVME
                     NDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR
                     QLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIV
                     FLTVFKGFVNKAAY"
     gene            1746..3224
                     /gene="wzxC"
                     /locus_tag="OQQ76_003962"
     CDS             1746..3224
                     /gene="wzxC"
                     /locus_tag="OQQ76_003962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid undecaprenyl disphosphate flippase
                     WzxC"
                     /protein_id="HCS1970255.1"
                     /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL
                     TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGLVVCVAVFLLSDAI
                     GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV
                     VSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTA
                     DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPIKLNPIITRVLFPAFAKIQ
                     DDTEKLRINFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVG
                     LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI
                     INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYALGIVLKGQLALGMLLA
                     VQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG"
BASE COUNT          697 a          814 c          997 g          817 t
ORIGIN      
        1 gaaaacgctg ggcaaactgg tacgcgaccg gatggcggca ttcccggcaa gcggtgagat
       61 caacagcaaa ctggcgcaac ccgttgaggc gattaaccgc gtcgaacagc attttagccg
      121 tgaggcgctg gcggtggatc gcactgatgg catcagcatg acctttgccg actggcgctt
      181 taacctgcgc tcctccaaca ccgaaccggt ggtgcggttg aatgtggaat cacgcggtga
      241 tgtgccgctg atggaagcga gaacgcgaac tctgctggcg ttgctgaacg agtaatgtcg
      301 gatcttccct taccccattg cgggtaaggg gctaataaca ggaacaacga tgacaaatct
      361 aaaaaagcgc gagcgagcga aaaccaatgc atcgttaatc tctatggtgc aacgcttttc
      421 agatatcacc atcatgtttg ccggactatg gctggtttgc gaagtgagcg gcctgtcatt
      481 cctctacatg cacctgttgg tggcactgat tacgctggtg gtgttccaga tgttgggcgg
      541 catcaccgat ttttatcgct catggcgcgg tgttcgggca gcgacagaat ttgccctgtt
      601 gctacaaaac tggaccttaa gcgtgatttt cagcgccgga ctggtggcgt tcaacaatga
      661 tttcgacacg caactgaaaa tctggctggc gtggtatggg ctgaccagca tcggactggt
      721 ggtttgccgt tcatgtattc gtattggtgc gggctggctg cgtaatcatg gctataacaa
      781 gcgcatggtc gccgtagcgg gggatttagc cgccggacaa atgctgatgg agagcttccg
      841 taatcagccg tggttagggt ttgaagtggt gggggtttac cacgacccga aaccgggcgg
      901 cgtttctaac gactgggcgg gtaacttgca acagctggtc gaggatgcaa aagcgggaaa
      961 gattcataac gtctatatcg cgatgcaaat gtgcgacggc gcgcgagtga aaaaactggt
     1021 ccatcaactg gcggacacca cctgttcggt gctgctgatc cccgatgtct ttaccttcaa
     1081 cattctccat tcacgtctcg aagagatgaa cggcgttccg gtggtgccgc tgtatgacac
     1141 gccgctttcc ggggttaacc gcctgctcaa acgtgcggaa gacattgtgc tggcgacgct
     1201 tatcctgctg ctgatctccc cggtgctgtg ctgcattgcg ctggcggtga aactcagttc
     1261 acctgggccg gttattttcc gccagactcg ctacggcatg gatggcaaac cgatcaaagt
     1321 gtggaagttc cgttccatga aagtgatgga gaacgacaaa gtggtgactc aggcgacgca
     1381 gaacgatccg cgcgtcacta aagtggggaa ctttcttcgc cgcacctcgc tggacgaact
     1441 gccgcagttt atcaatgtgc tgaccggggg gatgtcgatt gtgggtccac gtccgcacgc
     1501 ggtggcgcat aacgaacagt atcgacagct cattgaaggc tacatgctgc gccataaagt
     1561 gaaaccgggc attaccggct gggcgcagat taatggctgg cgcggcgaaa ccgacacgct
     1621 ggagaaaatg gaaaaacgcg tcgagttcga ccttgagtac atccgcgaat ggagcgtctg
     1681 gttcgatatc aaaatcgttt tcctgacggt attcaagggc ttcgttaaca aagcggcata
     1741 ttgatatgag cttacgtgaa aaaaccatca gcggcgcgaa gtggtcggcg attgccacgg
     1801 tgatcatcat cggcctcggg ctggtgcaga tgaccgtgct ggcgcggatt atcgacaacc
     1861 accagttcgg tttgcttacc gtgtcgctgg tgatcatcgc gctggcagat acgctttctg
     1921 acttcggtat cgctaactcg attattcagc gaaaagaaat cagccacctt gaactcacca
     1981 cgctgtactg gctgaacgtc gggctggggc ttgtggtgtg cgtggcggtg tttttgttga
     2041 gtgatgccat tggcgacgtg ctgaataacc cggacctggc accgttgatt aaaacattgt
     2101 cgctggcgtt tgtggtgatc ccccacgggc aacagttccg cgcgttgatg cagaaggagc
     2161 tggagttcaa caaaatcggc atgatcgaaa ccagcgcggt actggcgggc ttcactttta
     2221 cggtggttag cgcccatttc tggccgctgg cgatgaccgc gatcctcggt tatctggtca
     2281 atagtgcggt gagaacgctg ctgtttggct actttggccg caaaatttat cgccccggtc
     2341 tgcatttctc gctggcgtcg gtggcaccga acttacgctt tggtgcctgg ctgacggcgg
     2401 acagcatcat caactatctc aacaccaacc tttcaacgct ggtgctggcg cgtattcttg
     2461 gcgcgggcgt ggcaggggga tacaacctgg cgtacaacgt ggccgttgtg ccgccgataa
     2521 agctgaaccc aatcatcacc cgtgtgttgt ttccggcgtt tgccaaaatt caggacgaca
     2581 ccgaaaagct gcgtattaac ttctacaaac tgctgtcggt ggtggggatt atcaactttc
     2641 cggcgctgct ggggctgatg gtggtgtcga ataactttgt accactggta ttcggcgaaa
     2701 agtggaacag cattattccg gtgctgcaat tgctgtgtgt ggtggggcta ctgcgctccg
     2761 tgggtaaccc gattggttcg ctgctgatgg cgaaagcgcg ggtcgatatc agttttaaat
     2821 tcaacgtatt caaaaccttt ctgtttattc cggcgattgt tattggtggg cagatggcgg
     2881 gcgcaatcgg cgtcacgctt ggcttcctgc tggtgcagat tatcaacacc attctgagtt
     2941 acttcgtgat gattaaaccg gttcttggtt ccagttatcg ccagtacatc ctgagtttat
     3001 ggctgccgtt ttatctctcg ctgccgacgc tggtggtcag ttatgcgttg ggcattgtgc
     3061 tgaaagggca actggcgctg gggatgctgc tggcggtgca aatagccgcg ggcgtgctgg
     3121 cgtttgtggt gatgattgtg ctgtcgcgcc atccgctggt ggtggaagtg aagcgtcagt
     3181 tttgtcgcag cgaaaaaatg aaaatgcttt tacgggcggg gtgagttgtt gttttcggtt
     3241 ccgacaacgg ttgccgggtg cagcgtaaaa cgccttatcc atcctacggt tctgtgctcg
     3301 ggacctgtag gcctgataag acgcg
//
LOCUS       DAJVUN010000277         3109 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.282, whole genome shotgun sequence.
ACCESSION   DAJVUN010000277 DAJVUN010000000
VERSION     DAJVUN010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.282"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..196)
                     /locus_tag="OQQ76_003963"
     CDS             complement(<1..196)
                     /locus_tag="OQQ76_003963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HCS1970256.1"
                     /translation="MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLP
                     WALMKCKRYLYANMEVNGQRF"
     gene            389..891
                     /locus_tag="OQQ76_003964"
                     /pseudo
     CDS             389..891
                     /locus_tag="OQQ76_003964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026287.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(937..1353)
                     /gene="rraB"
                     /locus_tag="OQQ76_003965"
     CDS             complement(937..1353)
                     /gene="rraB"
                     /locus_tag="OQQ76_003965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HCS1970257.1"
                     /translation="MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLE
                     TLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAE
                     KFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH"
     gene            1515..2519
                     /gene="argF"
                     /locus_tag="OQQ76_003966"
     CDS             1515..2519
                     /gene="argF"
                     /locus_tag="OQQ76_003966"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HCS1970258.1"
                     /translation="MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLT
                     GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD
                     GIQYRGYGQEIAETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLV
                     YAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED
                     VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKYLHCLP
                     AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
                     "
     gene            complement(2591..>3109)
                     /locus_tag="OQQ76_003967"
     CDS             complement(2591..>3109)
                     /locus_tag="OQQ76_003967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1970259.1"
                     /translation="WQHYQNSRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVK
                     LLFNEVPVSILVNDIFLKDFFMKQPDFAKWYFYQLLKKYEGEQLYLNELGYVYGNEEK
                     TNEIVNNNPGYVVEIFEEKMGNELKIRTRMMEILRDGKINIYEYINKEQLEKLNPPED
                     LRIAIKKLGWNN"
BASE COUNT          871 a          704 c          662 g          872 t
ORIGIN      
        1 aaaatcgttg tccgttaact tccatattag catagagata acgcttacat ttcattaatg
       61 cccatggtaa atagatacct agcgttataa tcgttaacaa cacattcacc acacaaataa
      121 gaaaatatct ctcacctgta ccatgaaaaa caaacgaatg ggacggaaca tccatttcat
      181 taataacttg agccataaaa attccctgaa ttaaaaaatc cattgatata atttatatat
      241 acagacagta aaatgttctg ccacgttaca atactcttat cagtaatagg ctggcaaaaa
      301 ctttattgct ttataagatg cttgcgcacg taagaagaga gtggtattaa acaaatgtat
      361 aattacttta tttttattgg gttaaactat gaataacatt gcgccgcaat cacctgtaat
      421 gcgtcgcctg acgctacagg ataatcctgc tattgcccgc gtcattcgtc aggtatccgc
      481 cgaatacggt cttaccgctg ataaaggcta caccgtcgcc gatccgaatc ttgacgaact
      541 gtatcaagtg tatagtcagc cgggtcatgc atattgggtg gttgagtacg agggtgaagt
      601 ggtcggcggc ggtgggattg cgccattagc aggtagtgaa tcggacattt gcgaactgca
      661 aaagatgtat tttcttccgg ctattcgcgg taaagggctg gcgaaaaaac tggccttaat
      721 ggcgatggag caggcacgag agatgggctt caaacgctgc tatctggaaa cgaccgcttt
      781 ttaaaggaag ccattgcgct ttatgagcat ttgggctttg agcatatcga ctatgcactt
      841 ggctgcacgg gccatgttga ttgtgaagtg cggatgttgc gcgaactcta aaaaaatgcc
      901 cgctagtgtg tgctatcggg cattttaatc aattaattag tggcgaaccc cgtcatcgtc
      961 ttcatcgaca aaatcttcat cgtcgccgtc ttcgccatta ggatcttcaa aataagtgcc
     1021 ccaaccgtcg tactcaacgt caaatttctc cgccaatgtc atcagttgtt caacctgggc
     1081 atcgatcaga tcggcattca acgcgcactc gctgaggatg tcgcagcaaa tcacgatatc
     1141 accatcttca acttccagct cttctggatc ggtcacttcg taaccgagtt taaacgcttc
     1201 aactgctgct ttttccaggg tttccagatc gtctgcggaa agatggtgtt cgatggtgta
     1261 cagcgcgtcc ggatcgctgc catcttccag taattcttca ataatcaaac gagtttcttc
     1321 acgctgttct tccagttgtt ccgggtttgc catggctcat tcctcttaat gtcctgccga
     1381 tactcttatt gtcacatacc actgacattg cctccacctt tgtgacaaag atttatgctt
     1441 tagacttgca aatgaataat catccatata aattgaattt taattcattg agacgttagc
     1501 cacaggaggg atctatgtcc gggttttatc ataagcattt cctgaaatta ctcgatttca
     1561 cgccagctga actcaacagc ctgctgcagt tagccgcgaa gctgaaagcc gataagaaaa
     1621 gcggcaaaga agaagccaaa ctcactggta aaaacatcgc gctcatcttc gaaaaagact
     1681 cgacccgtac ccgatgctct ttcgaagttg ccgcatatga ccagggtgct cgcgttactt
     1741 atctcggccc aagcggcagt cagattggtc ataaagagtc gattaaagac actgcccgcg
     1801 tgctgggtcg catgtatgac ggtattcagt atcgcggcta tggtcaggag attgccgaaa
     1861 cactggcgga atacgctggc gtgccggtat ggaacggcct gaccaatgag tttcacccca
     1921 cgcagttgct ggcggatctc ctcaccatgc aggagcattt acccggtaaa gcattcaacg
     1981 aaatgacgct ggtctatgca ggtgacgcac gtaacaacat gggcaattcg atgctcgaag
     2041 ctgcggcgct taccggtctg gatttgcgtc tggtcgcgcc acaggcatgc tggccggaag
     2101 ctgcgctggt tacggaatgc cgcgccctgg cacagcaaaa tggcgggaat attacgctga
     2161 cggaagatgt agccaaaggt gttgaaggtg ctgactttat ctataccgat gtatgggtgt
     2221 cgatggggga agcaaaagag aaatgggcag aacggattgc attactgcgt gattatcagg
     2281 tgaacagcaa gatgatgcag ttgaccggta acccggaggt caaatacctc cactgcctgc
     2341 ccgcgtttca tgacgaccag acgacgcttg gtaagaaaat ggcggaagag tttggcctac
     2401 atggcggaat ggaagtgact gatgaggtct tcgaatctgc cgccagcatt gtttttgatc
     2461 aggcggaaaa ccgcatgcat accatcaaag cggtgatggt cgcgacgctc agtaaataat
     2521 tgatatcgct ataaagatgc cgggaaatac aaaaacatcc cggcatcaca ttattttatg
     2581 cagtaatagt tcaattattc caccccaatt tttttattgc tatacgtaaa tcttccggag
     2641 gatttaattt ttctaactgt tctttattaa tatattcata tatatttatt ttcccatccc
     2701 ggaggatttc catcattctt gttctaattt ttaattcatt acccatcttt tcttcaaaaa
     2761 tctcaacgac ataacccgga ttgttattta caatttcatt tgttttttct tcattaccat
     2821 aaacatatcc taactcatta agatacagct gttcgccctc atacttctta agtaattgat
     2881 agaagtacca cttcgcaaaa tcaggttgct tcatgaaaaa atccttcaaa aaaatatcat
     2941 ttactaaaat gctgacaggc acttcattaa atagcaactt aacatcatca aataacctta
     3001 gtattaagcg tgatttttct tgattgctta agttaaaatc attgacatat gcaaccaact
     3061 tatcccaaat caattcctgt aatttacggc tattttggta atgctgcca
//
LOCUS       DAJVUN010000278         3098 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.283, whole genome shotgun sequence.
ACCESSION   DAJVUN010000278 DAJVUN010000000
VERSION     DAJVUN010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3098
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.283"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            103..2031
                     /locus_tag="OQQ76_003968"
     CDS             103..2031
                     /locus_tag="OQQ76_003968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HCS1970260.1"
                     /translation="MNISEQQLNNMMSAVTTALQPLIRALPVTPVEWADQNYYLPKES
                     SYGEGEWKTLPFQVAIMNCMGNDQVRTVNLIKSARVGYTKMLLGVVGYFIEHKSRNSL
                     LFQPTDSAAEDFMKSHVEATIRDVPCLKDLSPWLGRKHRDNTLTLKRFSSGVGFWCLG
                     GAAAKNYREKSVDEVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKIK
                     GTCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDESTPFGLKWEKDSPESVFYLCEH
                     HGCVIHQSELDQSNGRWICENTGMWTRDGLTFFSAAGNEIPPPRSITFHIWTAYSPFT
                     TWVQIVYDWLDALKDPNGLKTFVNTTLGETWEEAVGEKLDHQVLMDKVVHYTAAVPAR
                     VVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDEEETLLRVDAAINKKYC
                     HADGTEMTISRVCWDTGGIDGEIVYQRSKKHGVFRVLPVKGASVYGKPVITMPKTRNQ
                     RGVYLCEVGTDTAKEILYARMKADPTPADEATSYAIRFPDDPEIFSQTEAQQLVAEEL
                     VEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQLDLAVLAKSREEETTRP
                     TLKELAAKLSGGVNGYSR"
     gene            2015..2221
                     /locus_tag="OQQ76_003969"
     CDS             2015..2221
                     /locus_tag="OQQ76_003969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970261.1"
                     /translation="MVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLDELN
                     RAINDAESVLGTTRRRRRPLGVRL"
     gene            2218..>3098
                     /locus_tag="OQQ76_003970"
     CDS             2218..>3098
                     /locus_tag="OQQ76_003970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1970262.1"
                     /translation="MKRTPVLIDVNGVPLRESLSYNGGGAGFGGQMAEWLPPAQSADA
                     ALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRPNWRWLGMRETAAK
                     SFVDEVEAAWSEYAEGMFGEIDVEEKRTFTEFIREGVGVHAFNGEIFVQPVWDTESTQ
                     LFRTRFKAVSPKRVDTPGHGMGNRFLRAGVEVDRYGRAVAYHICEDDFPFSGSGRWER
                     IPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDSLQATQLQSAIVKAMYA
                     ATIESDLDTEKAFEYIAG"
BASE COUNT          735 a          716 c          949 g          698 t
ORIGIN      
        1 ttcctgattt aacaccacgc catcttgacc atctgaaaac ccttattgcg aagggggcaa
       61 atcagtgtgc gcgggcaggg gataaattac cggatttact cgatgaatat atcagagcaa
      121 caactgaata atatgatgag tgctgtcaca acagcattac agcccctgat aagggcattg
      181 ccggtgacgc cagttgaatg ggctgatcaa aattattatc tgcctaaaga atcttcatat
      241 ggtgagggag aatggaaaac gctgccgttc caggtcgcca ttatgaactg tatgggtaac
      301 gaccaggttc gcacggttaa cctgattaaa tctgcccgtg ttggctatac aaagatgttg
      361 ctgggggtgg tcgggtattt tattgagcat aaatcacgaa acagtctgct ttttcagccc
      421 acggattctg ccgctgaaga ttttatgaag tctcacgtgg aggcgacgat tcgggatgtg
      481 ccatgcctga aagacctttc cccatggctg ggtcgtaaac atcgtgataa taccctcacg
      541 ctgaaacgtt tttcatcggg cgtgggcttc tggtgcctgg gcggggctgc cgctaaaaac
      601 taccgtgaaa aatccgtgga cgaggtctgc tatgacgaac tttcctcgtt cgaaccggat
      661 gtcgaaaaag agggttcgcc aaccctgctg ggggataaac gtattgaggg ctctgtatgg
      721 cccaaatcca ttcgcggctc gacgcctaaa atcaaaggca cctgccagat cgaaaaagcg
      781 gccaacgagt cggcgcattt tatgcgtttt tatgtgccct gcccacactg tggggaggag
      841 cagtatctga aatttggcga tgagtccacg ccttttgggc ttaaatggga gaaggacagt
      901 cccgaaagtg ttttctacct ctgtgaacat catggctgcg tgatccatca gtctgaactg
      961 gaccagagca acgggcggtg gatctgtgaa aacacgggca tgtggacccg tgacggtctg
     1021 acgtttttca gcgctgcggg taatgaaatt ccgccgccgc gctccatcac gttccatatc
     1081 tggacggcgt acagtccgtt taccacctgg gtacagatag tctatgactg gctggatgca
     1141 ctgaaagatc ccaacggcct gaaaaccttt gtgaacacca cgctgggcga gacctgggaa
     1201 gaagccgtgg gcgaaaaact cgatcaccag gtactgatgg ataaggtcgt gcattacacg
     1261 gcggcggtac ctgcccgggt ggtttatctg acggcgggca ttgactcgca gcgaaaccgt
     1321 tttgagatgt atgtctgggg atgggcaccg ggagaggaag cttttctggt ggataaaatc
     1381 atcattatgg gccgtcccga tgaggaagag acgctgttac gtgtggatgc ggcgatcaac
     1441 aaaaaatact gccatgcaga cggaaccgaa atgaccattt cccgtgtctg ctgggacacc
     1501 ggggggatcg atggtgaaat tgtctatcag aggtcaaaaa aacacggtgt tttccgggtg
     1561 ctgccggtaa aaggcgcatc tgtctatggc aagccggtga tcaccatgcc gaaaacccgc
     1621 aatcagcggg gcgtgtatct gtgtgaagtg gggacggaca ccgcaaaaga aattctctat
     1681 gcccgtatga aagccgatcc cacgcctgcg gatgaagcca cgtcgtatgc catccgtttt
     1741 cctgatgatc cggagatttt ttcgcagaca gaggcgcagc aactggtcgc ggaagagctt
     1801 gtggagaagt gggaaaaagg aaagatgcgt ctgctgtggg ataacaaaaa gcggcgtaac
     1861 gaagcgctgg actgcctggt gtatgcctac gcggcattac gtgtgtccgt gcaacgctgg
     1921 cagcttgatc tggctgtact ggcaaaatcc cgggaagaag agacgacccg gccaaccctt
     1981 aaagaactgg cagcgaagct gtccggagga gtgaatggtt acagtcgctg aactacaggc
     2041 gctgcgtcag gcacgccttg atttattaac cggtaaacgg gtggtgtctg tccagaaaga
     2101 tggtcgcaga attgaatata cggcggcttc tctggatgag cttaaccggg cgatcaatga
     2161 tgcggagtcg gtactgggga caacccgacg tcgccgtcgt ccgctgggag tgaggttatg
     2221 aaacgaacgc ctgtcctgat tgatgtgaac ggcgttccgc ttcgtgagag tctcagctac
     2281 aacgggggcg gcgcaggatt tggtgggcaa atggcggagt ggttgccacc ggcgcagagt
     2341 gccgatgcag ccctgctgcc tgcgttgcgt ctggggaatg cccgggcaga tgatctggtg
     2401 cgcaataacg ggatagcggc caatgcggtg gccctgcata aggatcatat tgtcgggcat
     2461 atgtttctga tcagctaccg tccgaactgg cgctggctgg ggatgcggga gactgcggca
     2521 aaaagttttg tcgatgaggt ggaggcggcc tggtcggaat acgccgaagg gatgtttggc
     2581 gagatcgacg tggaagagaa acgcacgttt acggaattta ttcgtgaagg tgtgggcgtt
     2641 catgcgttta acggcgaaat ctttgtgcag ccggtctggg atacggagag cacgcaactg
     2701 tttcgtacgc gttttaaagc cgtgagtccg aaacgggtgg acacgccagg acacggtatg
     2761 gggaaccgtt ttctgcgggc cggtgtggag gtcgatcgat atggtcgtgc cgttgcgtac
     2821 catatctgtg aggatgattt tccgttctct gggagtggac gatgggaacg gatcccgcgt
     2881 gaacttccca ccgggcgtcc ggccatgctg catattttcg agccggtgga ggacgggcag
     2941 acccgtgggg ccaatcagtt ttacagcgta atggaacggc tgaagatgct cgattccctg
     3001 caggcaacac agcttcagtc ggccatagtg aaggcgatgt atgcagcgac gattgaaagt
     3061 gaccttgata ccgaaaaggc ctttgaatat atcgccgg
//
LOCUS       DAJVUN010000279         3026 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.284, whole genome shotgun sequence.
ACCESSION   DAJVUN010000279 DAJVUN010000000
VERSION     DAJVUN010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.284"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            73..717
                     /locus_tag="OQQ76_003971"
                     /pseudo
     CDS             73..717
                     /locus_tag="OQQ76_003971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416671.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
     gene            705..1643
                     /gene="psuG"
                     /locus_tag="OQQ76_003972"
     CDS             705..1643
                     /gene="psuG"
                     /locus_tag="OQQ76_003972"
                     /EC_number="4.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HCS1970263.1"
                     /translation="MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQN
                     AQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFV
                     VAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTV
                     VCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSSFDVSIRLDSASEIARA
                     MAVKWQSGLNGGLVVANPIPEQFAMPEESINAAIDQAVAEAEEQGVIGKESTLFLLAR
                     VAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG"
     gene            1737..2987
                     /locus_tag="OQQ76_003973"
     CDS             1737..2987
                     /locus_tag="OQQ76_003973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HCS1970264.1"
                     /translation="MDIMRSVVGMVVLLAIAFLLSVNKKSISLRTVGAALLLQIAIGG
                     IMLYFPPGKWAVEQAALGVHKVMSYSDAGSAFIFGSLVGPKMDVLFDGAGFIFAFRVL
                     PAIIFVTALISLLYYIGVMGLLIRILGSIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDRMNRNELFTAICSGMASIAGSMMIGYAGMGVPIDYLLAASLMAIPGGILFAR
                     ILSPATEPSQVTFENLSFSETPPKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALI
                     NGIIGGIGGWFGFANASLESIFGYVLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVA
                     YLSFSPYLQTGGTLEVKTIAIISFALCGFANFGSIGVVVGAFSAISPKRAPEIAQLGL
                     RALAAATLSNLMSATIAGFFIGLA"
BASE COUNT          716 a          682 c          823 g          805 t
ORIGIN      
        1 ggagctgcat gacaaagtca tcgggcatta tctgaacata aaacactgtc aataagttgg
       61 agtcattacc cattactcga taataccggt gaaatgctgg ttgctataaa tgacatgaat
      121 attagcaacg ctattacagc tgaatatctc gcacagcacc gtgaatttat tcagagggca
      181 aaggtcattg tcgcggactg taatatcagt gaagaggcac tggcatggat tctggataat
      241 gccgccaacg tacccgtatt tgtcgatccg gtttccgcat ggaaatgtgt caaagtgcgc
      301 gaccgtctaa atcagatcca cactctgaag ccaaaccgcc ttgaagcgga aaccctgagt
      361 gggattgcgc tgtcagggcg tgaagatgtg gcaaaagttg ctgcctggtt ccatcaacat
      421 ggcctgaacc gactggtatt gagcatgggc ggcgacggcg tttattacag cgatatcagc
      481 ggtgaaaatg gctggtctgc gccgatcaaa accaatgtta ttaatgttac cggagcgggt
      541 gatgccatga tggcgggact tgcttcgtgt tgggtagacg gaatgccgtt tgccgaatct
      601 gttcgtttcg cacagggatg ttcgtcaatg gcgctctcct gtgaatacac caataacccc
      661 gatttatcga ttgccaacgt tatatcgtta gtggagaacg cagaatgtct gaattaaaaa
      721 tttcccctga attattacaa atttccccgg aagtgcagga cgctttaaaa aacaaaaaac
      781 cggttgtggc gctggaatcg accattattt ctcacgggat gccgttccca caaaatgccc
      841 agaccgcaat tgaagtagaa gaaactattc gtaaacaggg cgctgtacct gccactatcg
      901 ccattattgg cggcgtgatg aaagtgggtt taagcaaaga agaaattgaa ttactgggtc
      961 gtgaagggca taacgtgacc aaagttagtc gtcgcgattt accttttgtt gttgccgccg
     1021 gaaaaaatgg cgcaaccact gtggcttcaa cgatgattat tgcggcgctt gccggaatta
     1081 aagtatttgc caccggggga attggtggtg tgcatcgcgg ggcggaacat accttcgata
     1141 tttctgccga tttgcaagaa ctggcaaata ctaatgtcac cgttgtttgt gccggggcga
     1201 aatctattct cgatttagga ttaaccactg agtatttaga aaccttcggt gtgccgttaa
     1261 ttggctatca gactaaagcg ctacctgcgt ttttctgccg taccagctcg tttgacgtca
     1321 gtattcgtct cgacagcgcc agtgaaattg cccgtgcaat ggcggtgaaa tggcaaagcg
     1381 ggctgaacgg tggcctcgtg gtagcgaacc cgatcccgga acagtttgcg atgccggagg
     1441 aatctatcaa tgcagccata gatcaagccg tcgccgaagc cgaagagcag ggcgttattg
     1501 gtaaagaaag tacactgttc ctgctggcgc gcgttgctga gctgaccggc ggtgacagcc
     1561 tgaaatccaa tatccagctg gtgttcaaca acgccattct ggcgagtgaa attgccaaag
     1621 aataccagcg tctcgcgggt taatttctga cgggcagaaa gccgtcgccc gtactcatca
     1681 agcataccaa aacctggcgc tgacgccggg tttactggca tgaagggaaa atcattatgg
     1741 atataatgag aagtgttgtg gggatggtgg tgttactggc aatagcattt ctgttgtcag
     1801 tgaataaaaa gagcatcagt ttgcgcacgg ttggagccgc actgctgctg caaatcgcta
     1861 ttggtggcat catgctctac ttcccaccgg gaaagtgggc agtagaacag gcggcattag
     1921 gcgttcataa agtgatgtct tacagtgatg ccggtagcgc cttcattttt ggttcgctgg
     1981 ttgggccgaa aatggatgtc ctgtttgacg gtgcgggttt tatcttcgcc tttcgcgtac
     2041 ttccggcgat tattttcgtt actgcgctca tcagtctgct gtactacatt ggcgtgatgg
     2101 ggctgctgat tcgcatcctt ggcagcattt tccagaaagc tcttaacatc agcaaaatcg
     2161 aatcttttgt cgcagtcaca actattttcc tcgggcaaaa tgagatcccg gcgatcgtta
     2221 aaccgtttat cgatcgcatg aatcgcaacg agttgtttac cgcaatttgt agcgggatgg
     2281 cgtccattgc tggttcgatg atgattggtt atgccggaat gggcgtacca attgactacc
     2341 tgttagcggc atcgctgatg gcgatcccag gtggtatttt gtttgcacgt attcttagcc
     2401 cggccaccga gccttcgcag gtcacatttg aaaatctgtc gttcagcgaa acgccgccaa
     2461 aaagctttat cgaagcggcg gcgagcggtg cgatgaccgg gctgaaaatc gccgctggtg
     2521 tagcgacggt ggtaatggcg tttgtcgcaa ttattgcgct gatcaacggc attatcggcg
     2581 gaattggtgg ctggtttggt ttcgccaatg cctctctgga aagtattttt ggctatgtgc
     2641 tggcaccgct ggcgtggatc atgggtgtgg actggagtga tgccaatctt gcgggtagcc
     2701 tgattgggca gaaactggcg attaacgaat tcgtcgctta cctgagtttc tccccatacc
     2761 tgcaaacggg cggcacgctg gaagtgaaaa ccattgcgat tatctccttt gcgctttgtg
     2821 gttttgctaa ctttggttct atcggtgttg tcgttggcgc attttcggct atttcgccaa
     2881 aacgcgcgcc ggaaatcgcc cagcttggtt tacgggcgct ggcagcagca acgctttcca
     2941 acctgatgag tgcgactatt gccgggttct ttattggttt agcttgagtt tcattgccgg
     3001 atgtacgcgc ttattaagcg ttgcat
//
LOCUS       DAJVUN010000280         2966 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.285, whole genome shotgun sequence.
ACCESSION   DAJVUN010000280 DAJVUN010000000
VERSION     DAJVUN010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.285"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            88..2604
                     /locus_tag="OQQ76_003974"
                     /pseudo
     CDS             88..2604
                     /locus_tag="OQQ76_003974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
     gene            2615..>2966
                     /locus_tag="OQQ76_003975"
     CDS             2615..>2966
                     /locus_tag="OQQ76_003975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1970265.1"
                     /translation="MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVT
                     VNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKLND
                     SLDIKTTLQANDIPG"
BASE COUNT          848 a          721 c          683 g          714 t
ORIGIN      
        1 ggctgcaatc aatgattatg gcggcagttc cgggacagaa actcgtccac tgcaataaca
       61 aatataaaaa acacaggtca tcagggaatg ccacaacgac accaccaggg acataaacgc
      121 acaccgaaac agttggcgct catcatcaaa cgctgtttgc cgatggtgct cactggcagc
      181 ggcatgcttt gcactaccgc taacgccgaa gagtattatt tcgaccccat tatgctggaa
      241 actacaaaaa gtggtatgca aacaactgat ctgtcacgtt tttcaaaaaa atacgcacaa
      301 ctaccaggaa cttatcaggt tgatatctgg ctgaataaaa agaaggtttc acagaaaaaa
      361 attacattta ccgccaatgc agagcaactt ctgcagccac agtttacggt agaacaacta
      421 cgtgagctgg gtattaaggt ggatgaaatc ccggcgctgg ctgaaaaaga tgacgatagc
      481 gtgatcaact cgcttgaaca aatcattccc ggtacagctg ctgaatttga tttcaatcat
      541 cagcgactta atttgagcat tccccaaatt gcactgtacc gtgatgcaag aggttacgtc
      601 tccccttctc gttgggacga tggtatacca acgctgttta ccaactactc gtttacaggt
      661 tctgataacc gttaccgcca gggcaatcgt agccaacgac agtacctgaa tatgcaaaat
      721 ggtgctaatt ttggccccta gcgattacgt aactattcta cgtggacacg caacgatcag
      781 gcgtcaagct ggaacactat cagtagttat ttataacgtg atatcaaggc gttgaagtct
      841 cagttgcttc tgggagaaag cgccaccagc ggcagtattt tttccagcta cacctttact
      901 ggcgtgcaac tcgcttccga cgataatatg ttgccaaaca gccagcgcgg atttgcccca
      961 acggtacgcg gtatcgcaaa cagtagtgca atcgtgacta tcaggcaaaa tggttatgtg
     1021 atctatcaaa gcaacgtgcc agcgggtgcc tttgaaatta acgatctcta cccctcttcc
     1081 aacagcggcg atttagaagt cacgattgaa gaaagtgacg gtacacaacg tcgctttatc
     1141 cagccttatt cttcattacc catgatgcag cgacctgggc atctaaaata tagcgcgacc
     1201 gctggacgct atcgcgctga tgcaaacagt gatagcaagg aacccgaatt tgctgaagcc
     1261 acggcaatat atggtttgaa taatactttt acgctgtatg gcggcctgct cggttctgaa
     1321 gattattatg cgctggggat cggtatcggc ggcacacttg gcgcactggg cgcgttgtcg
     1381 atggatatca acagagctga cacccaattc gataaccagc actcttttca tggctatcaa
     1441 tggcgtacgc agtacatcaa agatatcccg gaaaccaaca ccaatatcgc tgttagctac
     1501 tatcgctata ccaacgatgg ctattttagt tttgatgaag ccaatacccg caattgggac
     1561 tataacagtc gccaaaaaag tgaaattcaa ttcaacatca gccagacaat atttgatggg
     1621 gtaagtctgt atgcctccgg ttcgcagcaa gactattggg gcaataacga gaaaaacagg
     1681 aatatctctg ttggggtttc cggccagcaa tggggaattg gttacagcct gaattatcaa
     1741 tacagccgct acactgatga aaataatgac cgtgcactct ctttgaatct cagtattccg
     1801 ttagaacgct ggttaccgcg tagccgggtt tcctatcaga tgaccagcca gaaagatcgc
     1861 ccaacccaac atgaaatgcg tcttgatggc tcactgctgg atgatggtcg cctgagctat
     1921 agcctggaac aaagtctgga tgacgataac aaccataaca gtagcctgaa cgccagttac
     1981 cgttcacctt atggaacctt cagtgccgga tacagttacg gtaatgacag cagccaatac
     2041 aattacggcg ttaccggcgg cgtggttatc catcctcatg gcgtgacgct ctcgcaatat
     2101 ctgggcaacg cttttgcgct tatcgatgct aacggggctt ctggcgtgag gatacaaaac
     2161 tatccgggga ttgctactga tccctttggc tatgcagtga ttccttatct cacgacttat
     2221 caggaaaacc gtctctcggt agatactacg cagctgcccg ataacgtcga tcttgaacaa
     2281 acaacacagt ttgtggtgcc caacagaggt gcaatggtag cggcgcgttt caacgccaat
     2341 atcggttatc gcgtacttgt tacagtcagc gatcgcaacg gtaaaccgtt gccctttggc
     2401 gctcttgcca gcaacgatga tacggggcaa caaagtatcg tcgatgaggg cggcatacta
     2461 tatctctctg ggatatcgag taaatcacaa agctggactg tacgctgggg aaatcaggca
     2521 gatcaacaat gtcagtttgc ttttagtaca ccggattcag aaccaacaac ctctgtatta
     2581 caaggcacag cgcagtgcca ttaaggataa aaaaatgaaa agagcgcctc ttataacagg
     2641 acttttgttg atatccacat cctgcgctta tgcctcctca ggagggtgtg gagccgacag
     2701 cactagcggt gcgacaaatt acagcagtgt ggttgatgat gttacggtga accagacaga
     2761 taacgtgaca ggacgggagt ttacctctgc aacgctaagt agcactaact ggcaatacgc
     2821 ctgttcctgc tctgcgggta aggcagttaa acttgtctat atggtcagcc ccgtacttac
     2881 caccactgga catcagacag gatattacaa actcaatgac agcctggata ttaaaaccac
     2941 attacaggca aacgacattc caggac
//
LOCUS       DAJVUN010000281         2947 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.286, whole genome shotgun sequence.
ACCESSION   DAJVUN010000281 DAJVUN010000000
VERSION     DAJVUN010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.286"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..274)
                     /locus_tag="OQQ76_003976"
     CDS             complement(<1..274)
                     /locus_tag="OQQ76_003976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HCS1970266.1"
                     /translation="MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYIN
                     HNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR"
     gene            601..996
                     /gene="rpsF"
                     /locus_tag="OQQ76_003977"
     CDS             601..996
                     /gene="rpsF"
                     /locus_tag="OQQ76_003977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HCS1970267.1"
                     /translation="MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM
                     VKAKDERRERRDDFANETADDAEAGDSEE"
     gene            1003..1317
                     /gene="priB"
                     /locus_tag="OQQ76_003978"
     CDS             1003..1317
                     /gene="priB"
                     /locus_tag="OQQ76_003978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HCS1970268.1"
                     /translation="MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHRSVQEEAGFHR
                     QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS
                     GD"
     gene            1322..1549
                     /gene="rpsR"
                     /locus_tag="OQQ76_003979"
     CDS             1322..1549
                     /gene="rpsR"
                     /locus_tag="OQQ76_003979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HCS1970269.1"
                     /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ"
     gene            1591..2040
                     /gene="rplI"
                     /locus_tag="OQQ76_003980"
     CDS             1591..2040
                     /gene="rplI"
                     /locus_tag="OQQ76_003980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HCS1970270.1"
                     /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNI
                     EFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA
                     VTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE"
     gene            complement(2111..2905)
                     /locus_tag="OQQ76_003981"
     CDS             complement(2111..2905)
                     /locus_tag="OQQ76_003981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS1970271.1"
                     /translation="MTLPTTIYSFPAYLPRFSSTDKPAKLKFHQYARATLLSNRGRDH
                     NCDGRRTVEIHKLDLSDWQAFNKLATKCNAYDGVTMNGDNSFGWNHEATLDNIHAQKY
                     NKAYAGARLTAELKYLLQDVESFEPNSKYTIHKVVLGPGYGTPDYTGQTIGYVVTLPA
                     QMPNCWSSELPTIDLYIDQLRTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSNS
                     AAIYSGLGFERVPQDRDIRSDRMHLTPANHPDLWTQENGEWIYLRN"
BASE COUNT          761 a          670 c          716 g          800 t
ORIGIN      
        1 agcgataaat atccgcgctg gcgtgcatat tgccgttact ccccggttcc cgcatcagaa
       61 ttacgtggta gtacgttgcg ccctgcgcat ctgtctcttc atttaatgcc tgacgtgctt
      121 cgctttcagt ggcgaaatta tgattgatat aaatcacgcc taagctctgt acgtcgtcca
      181 tatttctggc ctggtggtta ttaatttcaa tggctgccca tgtatttgca cttagcaaaa
      241 gcacagccag aagggctaaa acacgactga acatagatac ctcctcgacg gctgactttg
      301 tgtgctctcc tctgtgatga tcttctgatt taattttaat caatgataaa gaagttgatg
      361 gtgaccattt ctgatgcagt tgttcgaaaa aacactgtga cggaatgtga tgaacttcaa
      421 atcagcgagt tagttctttt gagcgaaaga tgagatttat ttgtcggctg gccttgagtt
      481 tagtggggca tacaagtact ataacgcgtc atttttcagc cgacctttaa cacgttcctt
      541 gcctccccgg gattcggctg acccagacag gaggctgaat aatccgtaag gagcaattcg
      601 atgcgtcatt acgaaatcgt ttttatggtc catcctgacc agagcgaaca ggttccgggc
      661 atgatcgagc gctacactgc tgccatcact ggtgcagaag gcaagatcca ccgtctggaa
      721 gactggggcc gccgtcagct ggcttacccg atcaacaaac tgcacaaagc acactacgtt
      781 ctgatgaacg ttgaagctcc gcaggaagtg atcgatgagc tggaaactac cttccgcttc
      841 aacgatgccg ttatccgcag catggttatg cgtaccaagc acgctgttac cgaagcatct
      901 ccgatggtta aagcgaaaga cgagcgccgt gagcgtcgcg atgatttcgc aaacgaaacc
      961 gctgatgatg ctgaagctgg ggattctgaa gagtaatttc tgatgaccaa ccgtctggtg
     1021 ttgtccggca ccgtgtgcag gactcccctt cgaaaggtca gtccatcagg aattcctcac
     1081 tgccagttcg tgcttgagca tcgttctgtg caggaggaag ccggttttca ccggcaggcg
     1141 tggtgccaaa tgcccgttat tgttagcgga cacgaaaacc aggccattac tcacagtata
     1201 acggtcggca gtcgcataac cgttcagggg ttcatttcat gccacaaggc aaagaacgga
     1261 ctgagcaaaa tggttttgca tgccgagcag attgaattga tagattctgg agactagcca
     1321 tatggcacgt tatttccgtc gtcgcaagtt ctgccgtttc accgcggaag gcgttcaaga
     1381 gatcgactat aaagatatcg ctacgctgaa aaactacatc accgaaagcg gtaagattgt
     1441 cccaagccgt atcaccggta cccgtgcaaa ataccagcgt cagctggctc gcgctatcaa
     1501 acgcgctcgc tacctgtccc tgctgccgta cactgatcgc catcagtaat cggtcacggt
     1561 ccattaatac gactttgaga ggataaggta atgcaagtta ttctgcttga taaagtagca
     1621 aacctgggta gcctaggtga tcaggtaaac gttaaagcgg gctatgctcg taacttcctg
     1681 gtaccgcagg gtaaagctgt tccagctacc aagaaaaaca ttgaattctt cgaagcacgt
     1741 cgcgctgaac tggaagctaa actggctgaa gttctggcag ctgctaatgc tcgcgctgag
     1801 aaaatcaatg cactggaaac tgttaccatc gcgtctaaag ctggcgacga aggtaaactg
     1861 ttcggttcca tcggtactcg cgacatcgct gacgctgtaa ctgcagctgg cgttgaagtg
     1921 gctaagagcg aagttcgtct gccgaacggc gttctgcgta ccactggcga acacgaagtg
     1981 agcttccagg ttcacagcga agtattcgcg aaagtgatcg taaacgtagt agctgaataa
     2041 ttcgttattc aacgagacgt aaaaacgccg accattggtc ggcgttttgc tttctatttt
     2101 tcgtcaggta ttagtttcgc aagtagatcc attcaccatt ctcttgtgtc cataagtcag
     2161 gatggtttgc tggcgttaga tgcatacgat cactccttat gtctcggtcc tgcggcactc
     2221 gctcgaaacc taaacccgag tagattgctg ctgaatttga taaggaacgc agaccaattt
     2281 tcaaatcatg gggtaaatca gaatacgcgt ttagcaatgc agcaatgatg aatccgaggg
     2341 cattagaaac gcctgtaaca gtgcgaagtt ggtcgatata aagatcgatt gttggtagtt
     2401 cagatgacca gcaattaggc atttgggcag gaagggttac aacgtatcct atcgtttggc
     2461 cggtatagtc tggagtacca taaccaggtc ccaaaaccac tttgtgtatt gtgtatttac
     2521 tgttgggttc gaaggattcg acatcttgca ataaatattt cagttctgcg gttaacctcg
     2581 cacccgcgta agctttattg tatttctggg cgtgaatatt atctaatgta gcttcatggt
     2641 tccatccaaa agaattatca ccattcattg ttactccatc gtaagcatta cacttcgttg
     2701 ctaacttatt gaatgcttgc cagtcagaga gatctagttt gtggatctca acagtacgtc
     2761 tgccatcgca attatgatct cttccacgat ttgacagtaa tgtagcgcgt gcgtattgat
     2821 gaaattttaa ttttgctggt ttgtcggtgg acgaaaaacg aggtaaatat gcggggaatg
     2881 aataaatagt tgttggtaat gtcattttat tgttgcctgt ttaatgtttt tacaaatatc
     2941 gcagttg
//
LOCUS       DAJVUN010000282         2947 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.287, whole genome shotgun sequence.
ACCESSION   DAJVUN010000282 DAJVUN010000000
VERSION     DAJVUN010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.287"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            577..1293
                     /locus_tag="OQQ76_003982"
     CDS             577..1293
                     /locus_tag="OQQ76_003982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970272.1"
                     /translation="MNDNSLLKNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
                     AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
                     VIFELLILKQHFILPLSLSCIISSLVISIIIRIYGRIFSVSCFSDIPFVREHSIKLIM
                     AGFLVYFWLFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
                     LIFNTEQSGFYEINDVYVRK"
     gene            1845..2249
                     /locus_tag="OQQ76_003983"
     CDS             1845..2249
                     /locus_tag="OQQ76_003983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970273.1"
                     /translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
                     YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPRVQILGTRAGCRVYGICGTTSTLHVAG
                     RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
     gene            2312..2947
                     /locus_tag="OQQ76_003984"
                     /pseudo
     CDS             2312..2947
                     /locus_tag="OQQ76_003984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          828 a          606 c          667 g          846 t
ORIGIN      
        1 ttgtgggcca taaatattcc aaaaaaatag cccgctccgt ttattaccgg aacgggcgag
       61 agcatgacat tgtctgtaat tataatgaga ctgctgattc tacttatttt taatttcaag
      121 aaaagcgttt tctacaaaga attatgagat ttaatgtttt gtttagacaa tattatcatt
      181 ctgttcaata atgaaagtct tcatcaacaa caagtaaaaa caacgtccct ctcatcgaac
      241 cggacttgca gatttcccgc atccggctct cttgcaacac atcagacctt cacgttcggg
      301 cggttatggg gaaggtccag caagctgtat gagccctaac tgtttgaata ccagtagatt
      361 accagaaact tctatcgatt gaagacatta ccaactagcg ttactaaatg ttggccgagt
      421 tttgttcact tgtctggttt tgatagtagc attctgcaga gtattttgat atgataaata
      481 tgcattaaca atgatattat tgttaatttc ccagcatgaa aattaaaaga tcaacttttt
      541 atctcgaata ttttttacat tatcagttgg tttcttatga atgacaattc attgcttaaa
      601 aattcttcat tattcatcgc ctatatggga tgtgtagggt gggtcagtgc ttattcttat
      661 ggctggggaa cctcttttta ctatggattt ccatggtggg ttgttggtgc aggtttggat
      721 gatgttgcca gaagtttact ctatgctatc atagtaatgg gtatactttt taccggttgg
      781 gggattggta ttttattttt tcttcttata aagaaaagaa gtaaaataca agacttgagt
      841 ttttttagac tattttttgc tattacccta ctgtttttcc ctgtaatatt cgaactttta
      901 attctcaaac aacatttcat acttccatta tcactttcat gcattattag ttcattggtt
      961 atttcaataa taattcgcat atatggacgg atcttttctg tatcatgttt ttcagatatc
     1021 ccttttgtta gagaacacag cattaagtta attatggctg gttttttggt ttatttttgg
     1081 cttttttcct ttcttgttgg ctggtataaa cctcaattaa aaaaagaata tcagatgctt
     1141 tgttataata atagttggta ttatgttctt gctcgttatg attcacggct cgttttgtct
     1201 agttcattta aagatgacag taacagattc ttaatattta atacagaaca gtcgggattt
     1261 tatgaaatca atgatgttta tgtcagaaag taataatcct cttccacaaa gtgaattaaa
     1321 cgaatatata atgcgttcga agtatatgta ttgagctgtc atactgagaa acaaacctta
     1381 gggcagcaca attaaagcca gaaacaacta tgcaagaaag ttactaaata agtgctcgga
     1441 acagtaaaac actcaggggg gactcagtcc agattatgta atcagataaa ttgccaaaca
     1501 tcacaaatca ccagcaggac tgagtgatgc cgagcattgc accaataccc cgtgatgaac
     1561 gatgcctgat gcagaaagct ccctataaaa caaagaacaa aaactacgac cggcgattca
     1621 ccgtcatact gatgctgcat cgtggtgaca ctgtctgtca ctttcatgtt gactgaacaa
     1681 ctctgctgcg aagaaggtgt accgccggcg ggatttgatt gtccggcgtc tagcttccac
     1741 ttccctgatg gaactgaaag ttgttatggc cggtcagctt gccctgtccg caggacatga
     1801 ggtgctgtga cggacagcac cagtaacgga aagtgacaat aaaaatgaat actgcgctga
     1861 tagttgcact aatgtgtatg tggtatgcgg tacccgctgc tgcaaaagag actttactgg
     1921 ctatgccacg taattcaaca gaacattgct atgcggagat taatgtgcac ggaccatatg
     1981 gggtgtattt ccgagtggtc ccgcatcccc ccgggggaaa gagctgggtc gaatgtaaca
     2041 gtgactacta ttactctgat aaaccaccga gagtacagat actcggaacc cgtgcagggt
     2101 gtcgggtata cggaatctgc gggaccacct cgacactgca tgtggctgga agaggggttg
     2161 tgtgtattaa aaatatatgc agtccacgtg ggatgataat tcacaggata cggaaacgtc
     2221 ctgtagtggc tgtaagcgat gagatgtgat cttacccagc aatagtggac acgcggctaa
     2281 gtgagtaaac tctcagtcag aggtgactca catgacaaaa acagtatcaa ccagcaaaaa
     2341 aacacgtaaa cagcattcgc ctgaattttg cagtgaagcc ctgaagcttg ctgaacgcat
     2401 cggtgttgct gccgcagccc gtgaactcag cctgtatgaa tctcagctct atgcgtggcg
     2461 cagcaaactg cagcaacaga tgacctcgtc tgagcgtgaa agtgaactgg ccgctgaaaa
     2521 tgcccgcctg aagcggcaac tggcggtgca ggcagaggaa ctggctatcc tccaaaaggc
     2581 cgcgacatac tttgcgaagc gcctgaaatg aagtatgtct ttattgaaaa acatcaggct
     2641 gagttcagca tcaaggcaat gtgccgcgtg ctccgggtgg cccgcagcgg ctggtatacg
     2701 tggtgtcagc ggcggacagg gataagccct cgtcagcagt tccgtcagca ctgcgacagc
     2761 gttgtcctcg cggcggcctt tacccggtca aaacagagtt acggtgcacc acgcctgacg
     2821 gatgaactgc gtgctcaggg ttaccacttt aacgtaaaaa ccgtggcggc aagcctgcgc
     2881 cgtcaggggc tgagggcaaa ggcctcccgg aagttcagcc cggtcagtta ccgcgcacat
     2941 ggcctga
//
LOCUS       DAJVUN010000283         2945 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.288, whole genome shotgun sequence.
ACCESSION   DAJVUN010000283 DAJVUN010000000
VERSION     DAJVUN010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.288"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(51..235)
                     /locus_tag="OQQ76_003985"
                     /pseudo
     CDS             complement(51..235)
                     /locus_tag="OQQ76_003985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311258.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
     gene            complement(397..471)
                     /locus_tag="OQQ76_003986"
     tRNA            complement(397..471)
                     /locus_tag="OQQ76_003986"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(436..438),aa:Arg,seq:cct)
     gene            complement(547..1479)
                     /locus_tag="OQQ76_003987"
     CDS             complement(547..1479)
                     /locus_tag="OQQ76_003987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HCS1970274.1"
                     /translation="MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHI
                     RQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGF
                     IIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLMRLWGVVLLGNILGTGITAWAFEY
                     MPIFNEETHDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIIL
                     MTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS
                     HAQIRNDMSNKRKAEARQKAERAENIKKNDKNPA"
     gene            1773..2528
                     /gene="mlaA"
                     /locus_tag="OQQ76_003988"
     CDS             1773..2528
                     /gene="mlaA"
                     /locus_tag="OQQ76_003988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding lipoprotein MlaA"
                     /protein_id="HCS1970275.1"
                     /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF
                     NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR
                     FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD
                     DGGDMADGLYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF
                     QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE"
     gene            complement(2710..2922)
                     /locus_tag="OQQ76_003989"
     CDS             complement(2710..2922)
                     /locus_tag="OQQ76_003989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005092548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970276.1"
                     /translation="MDDAKFRRDNVKEIISTLFANKVDVDHPENKYKDFKDLEDKVEK
                     RLQNRQTEYQNEINQLSAPDVNFDYI"
BASE COUNT          738 a          673 c          690 g          844 t
ORIGIN      
        1 cccatctttt atggggtgaa ggtaggtttc gtatgaaggg tatctgttgt ctcctgcaaa
       61 gtcataagcg gatattttcc tacggtcagt attttttcct taccgtcaat cttgtagcga
      121 agttgccata ccttttcccg gatacaggaa cataaaggta caggccatta ccatcgagaa
      181 ggcggtatgg tttttctttc ggctttgctg cttcaatctg cttaacggtg agcatgggta
      241 aaaatccggt gggtaaaatt attttatcca ctttttaccc gtcatggagt gcggctgtca
      301 acgatctgac gcgaaccatg acgaaccgtg aatatacgga aggcttgata ttcaggggat
      361 tttgcggact ggtacggatg ggagcgaact gataaatggt gtcccctgca ggaatcgaac
      421 ctgcaattag cccttaggag gggctcgtta tatccattta actaagagga caatgcggca
      481 tgagtatacc cgctaatgga ctgcggagta agtacactgc cgctcgattg cttaaaccct
      541 cgccatttat gctgggtttt tatcattttt cttaatgttt tccgcacgtt ctgctttttg
      601 gcgtgcttct gctttgcgct tgttgctcat gtcgttacgg atctgtgcat gactcattaa
      661 cgcgaagata aaggtgccgc cgcagatatt ccccgctaaa gtaggtagtg cgaagggcca
      721 aatgaaatcg ctccagtgca gcgtgccgtt aaacaccaga tagaggattt ctacagaacc
      781 gacaacgatg tgggtggtgt cacccagtgc aataagccag gtcatcaata taatcaccac
      841 aatctttgcc gcacccgctg caggaaacat ccaaaccata gtggcgatca gccagccgga
      901 aatgatcgcg ttggcaaaca tctcgctggg ggtattcttc atcacatcca tgccgatttt
      961 gacaaatgca tcgtgagttt cttcattgaa gataggcata tattcaaatg cccatgcagt
     1021 aatacctgtc ccgagaatat tacccagcag cacgacgccc cataatcgca taagtaagcc
     1081 gacgttgctc attgtcggtt tttgcatgac gggtagtacc gcagtcacgg tgttttcggt
     1141 aaataattgc tggcgggcca taatgacgat aataaaacca aaggtataac cgagattctc
     1201 caacaagaag ctgcctggca cgccttccag ttcgacatga aatatccctt ttgccagtaa
     1261 cgaagcgccc atcgacagac ccgccgcaat ggctgaccac agtagtgcca ttgcgtcgcg
     1321 ttccagctct ttttcaccat cctggcggat atgttcatga attgccatcg cccgggaggg
     1381 gagtcgatct tcatctattt ctattttttt gccgcgctct ttttcttcgc tctcaacttc
     1441 aatttcgtcg ctgtgttgat caattttgtc gttgtccatg gtctcttctc ttgaattagc
     1501 acgtatagct aaagcgtagc ggcttttttg ctcgcaactg gcgggagtta ctctgaaaat
     1561 gtagaaaagg ccgcgtttgc ctttttctgt ttctatagaa tcaagtagcc tacagggcgg
     1621 cgattaccaa gctatgatca aatcagcaaa tcagggcgtc tggacatcag ttgacgtgct
     1681 gttacaatcg cccacaccta aacaggcgga tacggtatcg ttccgtcatg gatggcaaac
     1741 tgcataagcc ataaaaaaac agggagacat ttatgaagct tcgcctgtcg gcgcttgctc
     1801 tgggaactac gcttctggtg gggtgtgcga gttccggtac agatcagcaa gggcgttctg
     1861 acccgttaga agggttcaac cgcaccatgt acaacttcaa cttcaatgta ttagacccgt
     1921 atattgttcg accggtcgct gtcgcctggc gtgattatgt tccgcaaccg gcgcgtaacg
     1981 gtttgagcaa ctttaccggc aaccttgaag aacctgcggt gatggttaac tacttcttgc
     2041 agggcgaccc ttatcagggg atggtccact ttacccgctt tttcctgaac accattttgg
     2101 ggatgggcgg ctttattgat gttgcaggga tggcgaaccc gaaactgcaa cggactgaac
     2161 ctcaccgctt cggtagtacg cttggtcatt atggcgtggg ttatgggcct tacgttcagt
     2221 taccgttcta cggtagcttc acgctgcgtg atgacggtgg tgatatggcg gatggtcttt
     2281 acccggttct ttcctggctg acctggccga tgtctgtggg taaatggacg cttgaaggga
     2341 tcgaaacccg cgctcagctg ctggattccg atggtctgct gcgtcagtcg tccgatcctt
     2401 atattatggt gcgcgaagcg tacttccagc gtcatgattt catcgctaat ggcggcgaac
     2461 tcaaaccgca ggaaaatccg aacgcacaag cgattcagga tgatttaaaa gatattgatt
     2521 ctgaataaga aacaaataaa aaaggtgagt tgcaaaactc accttttttg ttgttatccc
     2581 tcaattacca caagtaaaag gagataaacc gacaatgacc cggacgtaat gatgtaaaaa
     2641 tactgatgtt cgtcactgac tatttccgat attcaggcgt tgaaaaatca aaaaactgga
     2701 aaaataattt taaatataat caaaattaac atctggcgca gatagttgat taatttcatt
     2761 ttgatattcc gtctggcgat tttgaagcct tttttcaact ttatcttcga gatccttaaa
     2821 gtctttgtat ttattttcag gatggtcaac gtcaactttg ttagcgaata aagtagaaat
     2881 tatttctttt acattatcgc gtctaaattt tgcatcgtcc acttgaaaat tatatcttat
     2941 tgctc
//
LOCUS       DAJVUN010000284         2941 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.289, whole genome shotgun sequence.
ACCESSION   DAJVUN010000284 DAJVUN010000000
VERSION     DAJVUN010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.289"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..2739
                     /locus_tag="OQQ76_003990"
     rRNA            <1..2739
                     /locus_tag="OQQ76_003990"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            2835..>2941
                     /gene="rrf"
                     /locus_tag="OQQ76_003991"
     rRNA            2835..>2941
                     /gene="rrf"
                     /locus_tag="OQQ76_003991"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          776 a          647 c          923 g          595 t
ORIGIN      
        1 ataggttaat gaggcgaacc gggggaactg aaacatctaa gtaccccgag gaaaagaaat
       61 caaccgagat tcccccagta gcggcgagcg aacggggagc agcccagagc ctgaatcagt
      121 gtgtgtgtta gtggaagcgt ctggaaaggc gtgcgataca gggtgacagc cccgtacaca
      181 aaaatgcaca tattgtgagc tcgatgagta gggcgggaca cgtggtatcc tgtctgaata
      241 tggggggacc atcctccaag gctaaatact cctgactgac cgatagtgaa ccagtaccgt
      301 gagggaaagg cgaaaagaac cccggcgagg ggagtgaaaa agaacctgaa accgtgtacg
      361 tacaagcagt gggagcacgc ttaggcgtgt gactgcgtac cttttgtata atgggtcagc
      421 gacttatatt ctgtagcaag gttaaccgaa taggggagcc gaagggaaac cgagtcttaa
      481 ctgggcgtta agttgcaggg tatagacccg aaacccggtg atctagccat gggcaggttg
      541 aaggttgggt aacactaact ggaggaccga accgactaat gttgaaaaat tagcggatga
      601 cttgtggctg ggggtgaaag gccaatcaaa ccgggagata gctggttctc cccgaaagct
      661 atttaggtag cgcctcgtga attcatctcc gggggtagag cactgtttcg gcaagggggt
      721 catcccgact taccaacccg atgcaaactg cgaataccgg agaatgttat cacgggagac
      781 acacggcggg tgctaacgtc cgtcgtgaag agggaaacaa cccagaccgc cagctaaggt
      841 cccaaagtca tggttaagtg ggaaacgatg tgggaaggcc cagacagcca ggatgttggc
      901 ttagaagcag ccatcattta aagaaagcgt aatagctcac tggtcgagtc ggcctgcgcg
      961 gaagatgtaa cggggctaaa ccatgcaccg aagctgcggc agcgacacta tgtgttgttg
     1021 ggtaggggag cgttctgtaa acctgtgaag gtgtactgtg aggtatgctg gaggtatcag
     1081 aagtgcgaat gctgacataa gtaacgataa agcgggtgaa aagcccgctc gccggaagac
     1141 caagggttcc tgtccaacgt taatcggggc agggtgagtc gacccctaag gcgaggccga
     1201 aaggcgtagt cgatgggaaa caggttaata ttcctgtact tggtgttact gcgaaggggg
     1261 gacggagaag gctatgttgg ccgggcgacg gttgtcccgg tttaagcgtg taggctggtt
     1321 ttccaggcaa atccggaaaa ctaaggctga ggcgtgatga cgaggcacta cggtgctgaa
     1381 gcaacaaatg ccctgcttcc aggaaaagcc tctaagcatc aggtaacatc aaatcgtacc
     1441 ccaaaccgac acaggtggtc aggtagagaa taccaaggcg cttgagagaa ctcgggtgaa
     1501 ggaactaggc aaaatggtgc cgtaacttcg ggagaaggca cgctgatatg taggtgaagt
     1561 ccctcgcgga tggagctgaa atcagtcgaa gataccagct ggctgcaact gtttattaaa
     1621 aacacagcac tgtgcaaaca cgaaagtgga cgtatacggt gtgacgcctg cccggtgccg
     1681 gaaggttaat tgatggggtc agcgcaagcg aagctcttga tcgaagcccc ggtaaacggc
     1741 ggccgtaact ataacggtcc taaggtagcg aaattccttg tcgggtaagt tccgacctgc
     1801 acgaatggcg taatgatggc caggctgtct ccacccgaga ctcagtgaaa ttgaactcgc
     1861 tgtgaagatg cagtgtaccc gcggcaagac ggaaagaccc cgtgaacctt tactatagct
     1921 tgacactgaa cattgagcct tgatgtgtag gataggtggg aggctttgaa gtgtggacgc
     1981 cagtctgcat ggagccgacc ttgaaatacc accctttaat gtttgatgtt ctaacgttga
     2041 cccgtaatcc gggttgcgga cagtgtctgg tgggtagttt gactggggcg gtctcctcct
     2101 aaagagtaac ggaggagcac gaaggttggc taatcctggt cggacatcag gaggttagtg
     2161 caatggcata agccagcttg actgcgagcg tgacggcgcg agcaggtgcg aaagcaggtc
     2221 atagtgatcc ggtggttctg aatggaaggg ccatcgctca acggataaaa ggtactccgg
     2281 ggataacagg ctgataccgc ccaagagttc atatcgacgg cggtgtttgg cacctcgatg
     2341 tcggctcatc acatcctggg gctgaagtag gtcccaaggg tatggctgtt cgccatttaa
     2401 agtggtacgc gagctgggtt tagaacgtcg tgagacagtt cggtccctat ctgccgtggg
     2461 cgctggagaa ctgagggggg ctgctcctag tacgagagga ccggagtgga cgcatcactg
     2521 gtgttcgggt tgtcatgcca atggcactgc ccggtagcta aatgcggaag agataagtgc
     2581 tgaaagcatc taagcacgaa acttgccccg agatgagttc tccctgactc cttgagagtc
     2641 ctgaaggaac gttgaagacg acgacgttga taggccgggt gtgtaagcgc agcgatgcgt
     2701 tgagctaacc ggtactaatg aaccgtgagg cttaacctta caacgccgaa ggtgttttgg
     2761 cggatgagag aaagattttc agcctgatac agattaaatc agaacgcaga agcggtctga
     2821 tgaaacagaa tttgcctggc ggccgtagcg cggtggtccc acctgacccc atgccgaact
     2881 cagaagtgaa acgccgtagc gccgatggta gtgtggggtc tccccatgcg agagtaggga
     2941 a
//
LOCUS       DAJVUN010000285         2828 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.290, whole genome shotgun sequence.
ACCESSION   DAJVUN010000285 DAJVUN010000000
VERSION     DAJVUN010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.290"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..962
                     /gene="uxaB"
                     /locus_tag="OQQ76_003992"
     CDS             <1..962
                     /gene="uxaB"
                     /locus_tag="OQQ76_003992"
                     /EC_number="1.1.1.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tagaturonate reductase"
                     /protein_id="HCS1970277.1"
                     /translation="WIIIPCELIDYNGDALRELVLRYAQEWALPEAFIQWLDQANSFC
                     STLVDRIVTGYPRDEVAKLEEELGYHDGFLDTAEHFYLFVIQGPKSLATELRLDKYPL
                     NVLIVDDIKPYKERKAAILNGAHTALVPVAFQAGLDTVGEAMNDAEICAFVEKAIYEE
                     IIQVLDLPRDELESFASAVTGRFRNPYIKHQLLSIALNGMTKFRTRILPQLLAGQKAN
                     GTLPARLTFALAALIAFYRGERNGETYPVQDDAHWLERYQQLWSQHRDRVIGTPELVA
                     IVLAEKDHWEQDLTQVPGLVEQVANDLDAILEKGMREAVRPLC"
     gene            1159..2073
                     /locus_tag="OQQ76_003993"
     CDS             1159..2073
                     /locus_tag="OQQ76_003993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416037.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bestrophin family protein"
                     /protein_id="HCS1970278.1"
                     /translation="MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPW
                     YTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKT
                     TLPDSASVREFARLQIAFAHCLRMTLRKQPQAEVLAHYLKTEDLQPVLASNSPANRIL
                     LIMGEWLAVQRRNGQLSDILFISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTV
                     YLFCIMLPFALVVDLHYMTPFISVLISYTFISLDCLAEELEEPFGTENNDLPLDAICN
                     AIEIDLLQMNDEAEIPAKILPDRHYQLT"
     gene            complement(2077..>2828)
                     /gene="tam"
                     /locus_tag="OQQ76_003994"
     CDS             complement(2077..>2828)
                     /gene="tam"
                     /locus_tag="OQQ76_003994"
                     /EC_number="2.1.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trans-aconitate 2-methyltransferase"
                     /protein_id="HCS1970279.1"
                     /translation="WNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTA
                     LLQQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQW
                     LPDHYELFPHLVSLLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVH
                     AYYDILSEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRY
                     HQMLEEQYPLQENGQILLAFPRLFIVARRME"
BASE COUNT          662 a          714 c          719 g          733 t
ORIGIN      
        1 gttggatcat cattccgtgt gagttgattg actacaatgg cgacgcgttg cgtgaactgg
       61 tgctgcgcta tgcgcaagag tgggcactgc cagaagcatt tattcaatgg ctggatcagg
      121 ctaacagctt ctgttctacg ctggtggacc gtatcgttac cggttatccg cgcgatgaag
      181 tggctaaact ggaagaagaa ctgggttatc acgatggttt tctcgacacc gctgaacact
      241 tttacctgtt tgtgattcag gggccgaaat ccttagcgac tgagctgcgc ctggacaaat
      301 atccgctcaa tgtgctgatt gttgacgata ttaaaccgta taaagaacgc aaagcggcaa
      361 tcctcaacgg tgcgcacacc gcgctggtgc cggtggcgtt ccaggcaggg ctggataccg
      421 taggtgaagc gatgaacgat gctgaaattt gcgcattcgt tgaaaaagcc atctacgaag
      481 aaattattca ggtactggat ttgcctcgtg atgaactgga atctttcgcc agtgcagtca
      541 ccgggcgttt ccgtaacccg tacattaagc atcagctgct gtctatcgcg ctcaacggta
      601 tgaccaagtt ccgcacccgc atcctgccgc agctgctggc agggcagaag gcaaacggca
      661 cacttccggc gcgccttact ttcgcattag cggcattgat tgccttctat cgcggtgagc
      721 gtaacggaga aacatatccg gtacaggacg atgcacactg gctggaacgt tatcagcaac
      781 tctggagcca gcatcgtgac cgtgttatcg gcaccccgga actggtagcg attgttttgg
      841 cagaaaaaga ccactgggag caggacctga cgcaagtgcc tggtctggtc gagcaggttg
      901 ctaatgacct ggatgcgatt cttgaaaaag ggatgcgcga agctgtacgc ccgttgtgct
      961 aatactctga acccggtttc gaccgggttt cttattccac tatattagtt acaacattct
     1021 atatgccttt atcattaaca ggtgccacat gcagcgcctg ttaatgttgt aagcttgtag
     1081 gtaatttgta agtagcgtct tgagaatgtg atcgtaatca cgtttaatag ggcgactttt
     1141 ccacgcctga agataaccat gattgttcgt ccacaacaac actggctgcg ccgtattttt
     1201 gtctggcacg gctcagtatt atccaagata tcctcgcgct tactactcaa ttttctcttt
     1261 tctatcgctg ttattttcat gctgccctgg tacacgcatc tgggcatcaa attcaccctc
     1321 gcaccgttca gcattctcgg tgtcgccatc gccatttttc ttggttttcg taataatgcc
     1381 gggtacgccc gttacgttga agcgcgaaaa ctttggggac agttgatgat tgcctcacgg
     1441 tcgttactac gtgaggtaaa aacgacattg ccggattcgg caagtgtaag ggagtttgcc
     1501 aggctgcaaa tcgccttcgc ccactgttta cgcatgacat tacgcaaaca gccacaggcg
     1561 gaagtgctgg ctcattatct caagactgaa gatcttcagc ctgtactggc ttcgaactct
     1621 ccagctaacc gtatcttgtt aataatgggg gagtggttgg cggttcagcg ccgcaatggg
     1681 cagctttcag atatcctgtt tattagcctc aacgatcggc ttaatgatat ttcagcggtc
     1741 ctggcaggat gcgagcgcat tgcctatacg ccaattccct ttgcctacac cctgattttg
     1801 catcgtactg tttatctgtt ttgtatcatg ctgccgttcg cgctggtcgt ggacctgcat
     1861 tacatgacgc cttttatctc tgtgctgatt tcctacactt ttatttcgct ggattgtctg
     1921 gcggaagaac tggaagaacc gttcggtact gaaaacaatg atttaccgct ggatgccatc
     1981 tgcaacgcta ttgaaattga cctcttacag atgaacgatg aagccgaaat tccagcaaaa
     2041 attcttcccg atcgtcatta ccagctgacg tgatatttac tccatacgcc gggcaacaat
     2101 aaaaagacgc ggaaatgcca gcagtatctg tccgttctct tgcagtggat actgctcttc
     2161 cagcatctga tggtagcgct taagaaaaag ctgctgttcg ctctcggtca gatcctgtaa
     2221 ccacggacgt aatccagtgg cggtcaccca atcgataatc gcctggtgcg acggcatctg
     2281 gtgatagtag gtggttcgcc agatatcgac ctcacatccg gcttcgctca aaatatcgta
     2341 gtaagcatga acgccagcca acggctcacg cccgcgatcc gggtagtttt gttcccaggc
     2401 aacttcgcgc atgagcacat gggtcggctc cagccagtta tctggcatct gtactgccag
     2461 cacgccctgc ggattaagta aagaaaccaa gtgaggaaac aattcgtagt ggtcaggcag
     2521 ccattgcagt gaggcattag caaaaatcag atcgagtgcc tgtaccggtt gccagttgcg
     2581 gatgtctgct tccacgaact ggcagtctgg caaagcactg cgcgcttcag caatcatcgc
     2641 cggagacgag tcgatgcctg ttatcctggc cgcaggccaa cgttgttgta gaagggcggt
     2701 gctgttacct gggccacagc caagatcggc gacatattcg acattttcca gcggcactct
     2761 ggcaagcagc tccaccgccg gacgcgatcg ttcagcggaa aagtgcaaat ataaagaggg
     2821 gttccagt
//
LOCUS       DAJVUN010000286         2820 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.291, whole genome shotgun sequence.
ACCESSION   DAJVUN010000286 DAJVUN010000000
VERSION     DAJVUN010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.291"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..100)
                     /locus_tag="OQQ76_003995"
     CDS             complement(<1..100)
                     /locus_tag="OQQ76_003995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
                     /protein_id="HCS1970280.1"
                     /translation="MRTTSFAKVAALCGLLALSGCASKITQPDKYSG"
     gene            complement(403..996)
                     /gene="tehB"
                     /locus_tag="OQQ76_003996"
     CDS             complement(403..996)
                     /gene="tehB"
                     /locus_tag="OQQ76_003996"
                     /EC_number="2.1.1.265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
                     /protein_id="HCS1970281.1"
                     /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN
                     SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST
                     VVLMFLEAKTIPGLIANMQRCTKLGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY
                     EGWERVKYNEDVGELHRTDANGNRIRLRFATMLARKK"
     gene            complement(993..1985)
                     /gene="tehA"
                     /locus_tag="OQQ76_003997"
     CDS             complement(993..1985)
                     /gene="tehA"
                     /locus_tag="OQQ76_003997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HCS1970282.1"
                     /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL
                     VILAMIIWGLLTSAFITRLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR
                     PLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATMPGLYLPTVANNFISAMACGALG
                     YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV
                     NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS
                     GSENGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE"
     gene            2109..2820
                     /locus_tag="OQQ76_003998"
                     /pseudo
     CDS             2109..2820
                     /locus_tag="OQQ76_003998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707644.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          805 a          680 c          644 g          691 t
ORIGIN      
        1 aaccagaata tttatctggc tgggtgattt tagaggcaca accagacaga gccaacaagc
       61 cgcataaagc tgcaactttc gcaaatgatg tggtacgcat gaatagtttc ctgagatgat
      121 tatattactt tttaagttat agcaaaaagc gccgcttcgt gttgtggcaa aaaaagtgtt
      181 ggtgaaaata aatttttcag ccccttttca gacgacatag tcaatgccga aaaaggggct
      241 aagtcaatca tcagtagtta aatttcagta agttaagctg ctaaaaaact tcgactactg
      301 tgattaattt cacatccctt cgataaaaaa tatgcttacc gaaaagaaga acagtaaatc
      361 atctcagcgt ggggaatttt cacgcgcctt attcttagcg ggtcattttt tacgtgccag
      421 catcgtggcg aaacgcagtc taatacgatt accgttggcg tcggtgcggt gcagctcgcc
      481 gacgtcttca ttgtatttca ccctctccca gccttcgtaa tatcgacgta attctccctc
      541 tttgaaggca aacgggaagc cgacggtaca tggataatca gcggtatcca tcgccgccac
      601 aatcaggttg taaccaccaa gtttagtgca acgttgcata ttggcaatca gccctgggat
      661 ggttttagcc tcaaggaaca tcagtaccac agtcgaaaga ataaaatcgt actgtctatc
      721 aaatgtgagg ttattcagat caacgactcg ggtgtgtaaa ttatccagat tttcaatgga
      781 tttaatgcgc tctacattgg cgatactcat ggcattttta tcccatgcgt caacatcata
      841 accattggct gccaggtaaa gactgttacg accattgcca cagcccagat ccagcgtttt
      901 acccggttta accactttca ccgcttccag tacttcagag tgtgtgcggg ttaattcata
      961 tttatcagta aaatagtttt cgtcacgaat gatcattctt tgtcctctgc tttcattaaa
     1021 acagcgcgct cggttctgac taacaatttc ccctgcatca gaagcgcaaa agtacggatg
     1081 agcagtattg caataataaa attggtaaag ataaacagcg gtaccgccag cgtatggaaa
     1141 aatccatttt cgctgccact ccccagatgc aaaccggtgg ttgccagtgc agatacgccg
     1201 aacgagaaac tccagaatga agcattaaat ggctgggaga gataccatgg catcagacgt
     1261 agcataaaca gcagttgcag cagtccataa ccaaaaagca ttttcgccag cgtatcaccc
     1321 tcgccgccgt tgacgctcaa ccaggcacta caggccacca gcgcaggagc gagctgaatg
     1381 ccgagtgatg tccgcagtgc cgtgggtaat tctcccgaac tgcgcagacg ctgcaagatc
     1441 accggttcaa ggcttagcca tgagaaaacg cctgcgccta aaaacaccag accggcgtcg
     1501 gtgtagccca acgcaccaca ggccattgcg ctgataaagt tgttggcaac tgtcggcaga
     1561 tacagtccag gcatggtagc ttcttcaggg tgagatccgc gccataatcc cgcagtttgc
     1621 caggcggcat aagccaactg aaccacgaca ccaaaactga acaggcacac cgccagtggg
     1681 cgaaaccacg gaacaaaacc aatcgccacc agcatcgtcg ttgccggaaa caaactcaca
     1741 aaactgctca gcactggatg gcgaacttcc gccagcacgc tatgcggaaa gcgtatgagt
     1801 cgggtaataa atgcgctagt taataatccc cagatgatca tcgccagaat caccagccca
     1861 tcccctaacc agtggctgac ctgccaaacc tggctggcat agcgccaggc aaatcccatc
     1921 cctatcgtcc ccaacacaat accaaagtag cctgccggca aattgagcac tttatcgctc
     1981 tgcatcttct tactcatttt gtttaattta taaagtatat ttgaaatgca ttttatggaa
     2041 ttttctcgag catagccaga gccgcagaat ttgctacggt tatagtaagt cacctgtgag
     2101 aaaacgctat gcgcaaatat cgtctaagtg aagaacagcg agcctttagt tatcaggaag
     2161 atggcactaa aaaaagtgtg ttattacggc agattatcgc cattagcgat tttaacgatg
     2221 tgatagcagg aaccgctggc ggctggatcg atcgcgaaac ggtgttagca taggaaggaa
     2281 attgctggat ttacgaccag aatgctattg cgttcggcgg aacggtgatt tctggtaata
     2341 cgcgtatcac cggcaccagc gtgctgtgag gagaggttta cgcaacggat aacgtctgga
     2401 tcgataatag tgaaatcagt cagggtgcat atataagtga cagcgtcacc attcatgact
     2461 cattagttta cgggcaatgt agaatatttg gtcacgcctt aattgatcaa cattctatga
     2521 tcgtcgccgc acaaggctta acgcccgacc atcaactcct gctccaaatt tatgatcgcg
     2581 caagggttag cgcctcgcgt attgtccacc aggcacaaat ttatggcgat gccgtcgtcc
     2641 ggtatgcttt tattgaacat cgcgccgaag tttttgattt tgccagtgtt gaaggtaatg
     2701 aagagaacaa cgtctggcta tgcgattgcg ctaaagtcta cggtcacgcg caggtgaaag
     2761 ctggcataga agaagatgcc attccgacga ttcattacag ttcgcaggtg gcggaatatg
//
LOCUS       DAJVUN010000287         2784 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.292, whole genome shotgun sequence.
ACCESSION   DAJVUN010000287 DAJVUN010000000
VERSION     DAJVUN010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.292"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..253)
                     /locus_tag="OQQ76_003999"
     CDS             complement(<1..253)
                     /locus_tag="OQQ76_003999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HCS1970283.1"
                     /translation="MMSNVKKKDVPLISISLVAILFIAAALSLFPQQSADAANAIYTF
                     VTRTLGSAVQVLVLLAMGLVIYLATSKYGNIRLGEGKPEY"
     gene            complement(503..1588)
                     /gene="dmlA"
                     /locus_tag="OQQ76_004000"
     CDS             complement(503..1588)
                     /gene="dmlA"
                     /locus_tag="OQQ76_004000"
                     /EC_number="1.1.1.83"
                     /EC_number="1.1.1.85"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional
                     D-malate/3-isopropylmalate/tartarate dehydrogenase"
                     /protein_id="HCS1970284.1"
                     /translation="MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFDLSFEQMG
                     WASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQ
                     YVNLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQES
                     VFTRRGVDRILRYAFELAQSRPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRW
                     DKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFP
                     SLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIA
                     HGPKTPDMKGNATTPQVADAICKIILR"
     gene            1691..2614
                     /gene="dmlR"
                     /locus_tag="OQQ76_004001"
     CDS             1691..2614
                     /gene="dmlR"
                     /locus_tag="OQQ76_004001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310535.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator DmlR"
                     /protein_id="HCS1970285.1"
                     /translation="MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLE
                     QTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISS
                     FGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARK
                     LATNYRILCASPEFIAQHGAPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGHHAIKV
                     TGPLSSNHGEIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVS
                     RLATSAKVRITVEFLRQYFAEHYPNFSLEHA"
BASE COUNT          709 a          676 c          701 g          698 t
ORIGIN      
        1 tgtattccgg ttttccttcg ccaagacgaa tattgccgta tttactggtg gctaaataaa
       61 tcaccagtcc cattgccagc aaaaccaata cctgtacggc ggaacctaac gtacgcgtaa
      121 caaaagtgta tattgcgttg gccgcgtcgg ccgattgttg tgggaaaagg cttaatgcag
      181 ctgcgatgaa aagaatggcc accaggctga tgcttatcag cggcacatct tttttcttaa
      241 cattgctcat catgagtcat ctcctgggca taaaagcccg tctctggctt ttgccagttg
      301 taattatttg cagggtaatg agttgtatgt tgtgtttaac aaattgatta tttgaatatt
      361 acataaatta aacaattaag aatacggaaa gccataaaac acgaaacgga aacaataaaa
      421 ggtgaaatga cgcaggttat ttactgcaaa gaacgaataa aaaaacgcgt cagtgacgcg
      481 gttcaaataa actggtttga ccttaacgca aaataatttt gcaaatcgcg tcggcaacct
      541 gtggcgtggt ggcattgcct ttcatatcag gtgttttcgg cccgtgagca atcacttctt
      601 caattgctgc cagaataccg ttatgcgctt gctggaaacg ctcatcgcca ttgccgagaa
      661 aatcgagcat cattgccccg gcccaaatcg tggcgatagg gttagcaata tttttcccgt
      721 agatatccgg cgcggaaccg tggacaggct cgaagagcga cgggaaagtg cgttccggat
      781 tcaggttggc ggatggggca atgccaatgg tgccggtgca ggccgggcca agatcggaaa
      841 ggatatcgcc aaacaaattg gacgccacca ccacatcgaa gcgttccggc tgcatcacaa
      901 aacgcgcgca gagaatatca atatgctgct tgtcccagcg gatctccggg taattctcgg
      961 ccattgcttc cactcgctca tcccagtacg gcatgctgat ggctaaaccg ttcgatttag
     1021 tggcagaagt tagcgtctta cgtgggcggc tttgcgcaag ttcgaaggca taacgcaaaa
     1081 tgcgatcgac accacgacgt gtaaataccg attcctgaat gacgacttca tgctctgtac
     1141 cttcattcac tctaccgccg agcgaggaat attcgccttc ggtgttttcc ctgaccacgt
     1201 aaaaatcgat gtcgccaggc tgttttcccg ccagcgggca gggaacgcca ggaaagagac
     1261 gaaccgggcg caggttgacg tactggtcga attcacgacg aaatttcagc agcgaacccc
     1321 acaacgaaat atggtccgga acggtatccg gccagccgac ggcaccaaaa tagatggcgt
     1381 cgaaacggct aagttgctca tgccagtcgt ccggcatcat tttaccgtga tggctgtaat
     1441 actcgcagct cgcccacccc atttgctcaa aactcaagtc gaagccccag cgctcagcgg
     1501 cagcctgtaa cacgcgaatc ccttcaggaa ggacttcttt accaatcccg tctcccggga
     1561 tcgcagcaat acgcatcgtt ttcatcattg ggttctcact tcctgaccat caaaattgac
     1621 aacatcacca tcctataatt gacggaaaag gaattaatcc ccgtaactgg tgaaacataa
     1681 aacacgaatc atgaataatt taccgctgct gaatgatttg cgcgtcttta tgctggtggc
     1741 tcgtcgggct ggttttgccg ccgtggcgga agaactgggc gtttcaccgg cgttcgtcag
     1801 caagcgcatc gccttgctgg agcaaacgct aaacgtggtg ttgttacacc gcaccacccg
     1861 ccgcgtcacc attaccgaag aaggagagcg gatttatgaa tgggcgcagc ggattttgca
     1921 ggatgtcggt cagatgatgg acgaactttc tgacgtgcgt caggtgccac aggggatgct
     1981 gcgtattatc agcagctttg gttttggacg acaggtggtg gctccggcgt tatcagcgct
     2041 ggcgaaggcg tatccgcaac tggaattacg ttttgatgtg gaagaccggc tggtcgattt
     2101 ggtcaatgaa ggtgtcgatc tcgatattcg cattggcgat gacatcgccc ctaatttaat
     2161 cgcccgcaaa ctggcgacca attaccgcat tctctgcgcg tcgccggaat ttattgcgca
     2221 acatggcgcg ccgaaacatt taaccgatct ttctgcattg ccgtgcttgg tcattaaaga
     2281 gcgcgatcat ccttttggtg tctggcaatt acgcaataaa gaaggccacc atgcgattaa
     2341 agtcaccggc ccactgtcgt ctaatcatgg agaaattgtc catcagtggt gtctcgatgg
     2401 gcaggggatt gctctgcgtt cctggtggga tgttagcgaa aacattgcca gtggtcattt
     2461 agtgcaagtg ctaccggaat attaccagcc agcgaacgtc tgggccgttt atgtttcaag
     2521 gctggcgacg tcagcgaaag tgcggataac ggtagaattt ttacgccagt attttgccga
     2581 gcactacccg aatttttcac tggagcatgc ctgattaatg attcaattat cgggttgata
     2641 tcgggttaaa acctgatttt ctcctttcta agccgctaca gattggttag catattcacc
     2701 tttaatcgcg catgatcgaa agataattaa agaggttaat gtgttcgctg aatacggggt
     2761 tctgaattac tggacctatc tggt
//
LOCUS       DAJVUN010000288         2762 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.293, whole genome shotgun sequence.
ACCESSION   DAJVUN010000288 DAJVUN010000000
VERSION     DAJVUN010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.293"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..780)
                     /locus_tag="OQQ76_004002"
                     /pseudo
     CDS             complement(1..780)
                     /locus_tag="OQQ76_004002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935589.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
     gene            complement(1202..1354)
                     /locus_tag="OQQ76_004003"
     CDS             complement(1202..1354)
                     /locus_tag="OQQ76_004003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000379550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 family protein"
                     /protein_id="HCS1970286.1"
                     /translation="MDTIDLGNNESLVCGVFPNQDGTFTAMTYTKSKTFKTEAGARRW
                     LAKNTS"
     gene            complement(1557..1964)
                     /locus_tag="OQQ76_004004"
     CDS             complement(1557..1964)
                     /locus_tag="OQQ76_004004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1970287.1"
                     /translation="MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQ
                     PAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPES
                     EQKALLSEMRARVENFNKLFEELLKARKRSANK"
     gene            2041..2268
                     /locus_tag="OQQ76_004005"
                     /pseudo
     CDS             2041..2268
                     /locus_tag="OQQ76_004005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706800.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            2252..2674
                     /locus_tag="OQQ76_004006"
     CDS             2252..2674
                     /locus_tag="OQQ76_004006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970288.1"
                     /translation="MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELPLVP
                     GKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLA
                     AQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVVVH"
BASE COUNT          703 a          620 c          687 g          752 t
ORIGIN      
        1 agtccagccc tgtttttcca gataaaaccg gaaactctcc agggtacaga ccagtgcgcc
       61 atcaggaacg gtttcggtga attcgacatt gccgaatttg tcgaagtgaa caaccagagt
      121 gcgaccatca cccggaatca tcttgtcagc aggtggggtg ttattctggc gcagttcggc
      181 ctccatgcgg tcgaactcag caatgtaggc ttccttgaat gtagcggctt ttttgcccgt
      241 gaagcccatc accaggaaaa cgaagccgtt tttggtgatt tggtaggcgt tataagaatt
      301 gccgcggtgt tcgaatttaa cccgcgaaaa gttgctggtt aaaaatagtt cagaacattc
      361 gagggattct attttttgaa caacatggtg atgctacttg ccaaaaaact cagcaatcga
      421 aatagaagta gtgacggcgc gaccattttc gatggttacg tcagggtgag aaagggtagt
      481 agccataatg acatcctcaa gtgataagtt aattaactca ccagcagagg tgctaatctc
      541 atgggtggtg agacgcacag ggttagcact accggtcact cgagaacccg gccagccttg
      601 cggctgcccc gcacgcctca ccataatttg aatgtggctg tgcattacgc ataaaaaaac
      661 cgcttcagcg cggttatgcg ctcgagtaac tttcggggtg ctaatcccgg cacccgtttt
      721 atgaggtgca ggtacactat aattccaccc gttctggttt tcaatagcta cattcaacat
      781 tttctctttc ctttcatcac cgaagtgaat tttgtgatgc ggtgcctagt gcctccaggt
      841 gacgttaacc agttaacaat tacagtcggc tttcccaccc aaaccaataa ggactaacat
      901 gacttttaac tgtgccgcgt gcgcttagcc gcattcaccg catcacaaaa ttcactttaa
      961 aaagggcgga catcagccag caattaaacc gatgccgcca actggtactt cacacagcaa
     1021 tgtcgttatt tacaaccgga agcgcactcc caccatttaa atttcacaga caagaccgac
     1081 tctttatgaa taccggaaat gcgccttcgt gttgtgcccg gttttatttc accacctccg
     1141 ggctttggtg gcctcggcta tacctctaca gcgagaatat tgaattaatc caataaatgg
     1201 attagctggt atttttggca agccagcgac gtgcgccagc ttcggtttta aacgttttgc
     1261 ttttggtata cgtcatggcg gtgaatgtgc cgtcctgatt gggaaacacg ccacacacta
     1321 gggattcgtt gttgccaaga tcgatagtat ccatgctgac ctcatttccc cttaacgccg
     1381 gggtagcgga actgtttgct gagaacaccg tgcggtgtct tgatgaatga aaattagaat
     1441 aacctaaggt gtggagtcaa gattttatgt agaaaaacct aagttttttt gatgtaaaaa
     1501 acacaagtgt ttgaaagttt gtgcttttta ttacagggtg tggagaaaaa aggggattat
     1561 ttgtttgcgc ttcttttgcg agctttgagt agttcttcaa aaagtttgtt gaaattttca
     1621 actcgagcac gcatctctga caacagggcc ttttgctctg actcaggcag tgcgtcgaac
     1681 agttgaagta actctttttg atcttctgtc agaatggctg gctgattatc cgggatcggt
     1741 tcgcctggtt gtttatcttc atccccaaaa agaagccaag tcggtgagca ctgaagcgct
     1801 tggctcagtg cgaataatct tttccccgcc ggctgtgttt catctctttc ccattgagaa
     1861 attgttacgt gagccacttt gaccagctta cctaatgcgg cctgagacag ttttaatttt
     1921 ttacgcctat gtaagaggcg agcaccgaag gtttcgtttt tcatattagg gaattctaat
     1981 ttttcttgac ttaggtttct ctacgatcta gttttcttag gaaaatctaa ggagctcgat
     2041 atgttgaaaa ttgatgctat agcgtttttt ggcagcaaaa caaagcttgc caatgccgca
     2101 ggagttaggc tggcaagcat tgctgcatgg ggggaactgg ttcctgaagg tcgcgcgatg
     2161 cgcctgcaag aggcatctgg cggggaactt tagtacgacc ccaaagttta tgacgaatat
     2221 cgtaaggcaa aacgacctgg gaaggtgatt catgaaaatc aggcatgagc acatcgaatc
     2281 agtgctgtta gccctggcag ccgaaaaagg gcaggcgtgg gtcgctaacg caattactga
     2341 agaatatctg cggcaggggg gcggcgaatt gcctctggta ccaggcaagg actggaacaa
     2401 tcagcagaat atctatcacc gttggttgaa aggtgaaacg aaagcgcaaa gggaaaaaat
     2461 tcagaaactg atccctgcgg ttctggcaat tcttccgcgt gagctgcgtc accgactctg
     2521 tatcttcgat accctggaac gccgtgcatt actggcggcg caggaagcgt tgagtacggc
     2581 aattgatgcg catgatgacg cagttcaggc cgtttaccgg aaagcacatt tcagcggtgg
     2641 tgggtcgtcc gacgattctg tcgttgtgca ttgatgttta tgccgaacct cctctggttc
     2701 tgttgattgg ggaatcacag attatatccg gaggaaggtt cggcaccaga cgaggtttct
     2761 at
//
LOCUS       DAJVUN010000289         2698 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.294, whole genome shotgun sequence.
ACCESSION   DAJVUN010000289 DAJVUN010000000
VERSION     DAJVUN010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.294"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..490
                     /locus_tag="OQQ76_004007"
     CDS             <1..490
                     /locus_tag="OQQ76_004007"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418493.1"
                     /note="Acs; catalyzes the conversion of acetate and CoA to
                     acetyl-CoA; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase"
                     /protein_id="HCS1970289.1"
                     /translation="TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIES
                     ALVAHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLAT
                     PDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAM
                     PS"
     gene            690..1004
                     /locus_tag="OQQ76_004008"
     CDS             690..1004
                     /locus_tag="OQQ76_004008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HCS1970290.1"
                     /translation="MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLI
                     AFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ
                     AS"
     gene            1001..2650
                     /gene="actP"
                     /locus_tag="OQQ76_004009"
     CDS             1001..2650
                     /gene="actP"
                     /locus_tag="OQQ76_004009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation/acetate symporter ActP"
                     /protein_id="HCS1970291.1"
                     /translation="MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVV
                     FTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYD
                     GLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVAL
                     YLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFG
                     ASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTA
                     GLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAG
                     HLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLFANVF
                     KKGATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLS
                     MYWSKLTTRGTMLGGWLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISVAF
                     LGIWFFSATDNSAEGARERELFRAQFIRSQTGFGVEQGRAH"
BASE COUNT          539 a          721 c          762 g          676 t
ORIGIN      
        1 caccttcaaa aatatgtatt tcagcggcga cggcgcgcgt cgcgatgaag atggctatta
       61 ctggatcacc gggcgtgtgg acgacgtgct gaacgtctcc ggtcaccgtc tggggacggc
      121 agagattgag tcggcgctgg tggcgcatcc gaagattgcc gaagccgccg tagtaggtat
      181 tccgcacaat attaaaggtc aggcgatcta cgcctacgtc acgcttaatc acggggagga
      241 accgtcacca gaactgtacg cagaagtccg caactgggtg cgtaaagaga ttggcccgct
      301 ggcgacgcca gacgtgctgc actggaccga ctccctgcct aaaacccgct ccggcaaaat
      361 tatgcgccgt attctgcgca aaattgcggc gggcgatacc agcaacctgg gcgatacctc
      421 gacgcttgcc gatcctggcg tagtcgagaa gctgcttgaa gagaagcagg ctatcgcgat
      481 gccatcgtaa cccacaattg ccggatgcga gtcggtaacg gtttgtaggc ctgataagac
      541 gcgacagcgt cgcatcaggc attgattgcc ggatgcggcg taaacgcctt atccggccta
      601 cattcggcaa gggttacccg agcgttaacc ttctcccata agggagcggg aattaaaaca
      661 atccctacat tacctctgga gaatctgtga tgaatggcac tatttatcag cggatagaag
      721 acaatgcgca tttcagggag ttagtcgaaa aacggcaacg gtttgccacc atcctgtcga
      781 ttattatgct ggcagtttat atcggcttta ttttactgat cgccttcgcg cccggctggc
      841 tgggcacgcc gctgaatccg aacaccagcg tcacacgcgg tattccaatt ggtgttggag
      901 tgattgtgat ctcctttgtt ctcaccggta tctacatctg gcgggcgaac ggcgaattcg
      961 accgtcttaa taatgaagtc ctgcatgagg tacaagcatc atgaaaagag ttctgacggc
     1021 gcttgccgcc acactccctt tcgcagctaa cgccgcggat gctattagcg gggccgtaga
     1081 gcgccagcca acgaactggc aggcgattat tatgttcctg attttcgtcg tgtttacgct
     1141 cggcattacc tactgggcat caaaacgcgt acgttctcgt agcgactact acacggcagg
     1201 cggcaatatc acaggcttcc agaacgggct ggcgattgcc ggtgactata tgtccgccgc
     1261 ctcatttttg gggatctccg cgctggtgtt tacctccggc tatgacggct taatttactc
     1321 gctgggcttc ctggtgggct ggccgatcat tttgttcctg attgccgaac gtctgcgtaa
     1381 cctgggacgc tacacctttg ccgatgtagc ctcttaccgc ctgaaacaag ggccgattcg
     1441 tattctttcg gcctgtggtt ctctggtggt ggtggcgctt taccttatcg cccagatggt
     1501 aggcgcaggt aaactgatcg agctgctgtt tggccttaac tatcacattg cggtggtgct
     1561 ggtcggcgtg ctgatgatga tgtacgtcct gttcggcggc atgctggcga ccacctgggt
     1621 gcaaattatt aaagccgtgc tgttgctgtt cggtgccagc tttatggcct ttatggtgat
     1681 gaaacacgtc ggctttagct tcaataatct gttcagcgaa gcgatggcgg tacacccgaa
     1741 aggtgtcgac atcatgaagc cgggcgggct ggtgaaagat ccgatctccg cgctctctct
     1801 gggtctggga ctgatgtttg gtacggcggg cttgccgcac attctgatgc gcttctttac
     1861 agtcagcgat gcccgcgaag cacgtaagag cgtgttctac gccaccgggt ttatgggcta
     1921 cttctatatt ctgaccttta ttatcggctt cggcgcgatc atgctggttg gtgcgaatcc
     1981 ggaatataaa gacgcggcgg gccatctgat tggtggtaac aacatggcgg ccgttcacct
     2041 ggcgaatgca gtgggcggca acctgttcct cggttttatt tcagcggttg ctttcgccac
     2101 tatcctcgcg gtggttgcgg gtctgacgct ggcgggcgca tccgcggttt cgcatgactt
     2161 gttcgctaac gtcttcaaaa aaggtgcgac cgaacgtgaa gaactgcggg tatcgaaaat
     2221 caccgtcctg attttgggtg tgattgcgat tatcctcggc gtgctgtttg agaatcagaa
     2281 catcgccttt atggtaggcc ttgcgtttgc catcgcggcg agctgtaact tcccgatcat
     2341 tctgctttcc atgtactggt cgaaactgac tacccgtggc acgatgctgg gcggctggct
     2401 ggggctgatt accgcagtgg tgctgatgat cctcggccca actatttggg tacagatcct
     2461 cggtcacgaa aaagccatct tcccgtatga atacccggcg ctgttctcta tcagcgtggc
     2521 attcctcggc atctggttct tctcggcaac cgataactca gcggaaggtg cgcgcgagcg
     2581 tgaactgttc cgtgcgcagt ttatccgctc ccagaccggc tttggcgttg agcaaggccg
     2641 cgcacattaa tctctcccct tccccggtcg cctgaccggg gaatactctt cctctcca
//
LOCUS       DAJVUN010000290         2679 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.295, whole genome shotgun sequence.
ACCESSION   DAJVUN010000290 DAJVUN010000000
VERSION     DAJVUN010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.295"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            45..770
                     /locus_tag="OQQ76_004010"
     CDS             45..770
                     /locus_tag="OQQ76_004010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005112197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HCS1970292.1"
                     /translation="MKILNSNLITNISSTIRNHLLTSSKNIKTHPSPNMDVTSHRRLF
                     LKDGIGLSQTGKATQLVIMSHGGWKEISHPQTLFTRQKGDGWTVVPKNLRIDFYTKDN
                     DFTKGLSVLSEVNKRHTEAQKGLTPSLNISKDDLKVLANARNIPQSKLEEEMMSQSIY
                     RKEYATSNEKIKNYALYYHEQAQNIIQRHQDGLGNKNIDIAFITDKNHKKHLSDIFKV
                     INESGVKYDVIHFGACRVNREEK"
     gene            complement(996..1319)
                     /locus_tag="OQQ76_004011"
     CDS             complement(996..1319)
                     /locus_tag="OQQ76_004011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nikA protein"
                     /protein_id="HCS1970293.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR
                     AAALGKNVNSLTDDRVLKEVMRLGVLQKKLFIDGKRIGDREYAEVLIAITEYHRALLS
                     RLMAD"
     gene            1603..1797
                     /locus_tag="OQQ76_004012"
     CDS             1603..1797
                     /locus_tag="OQQ76_004012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HCS1970294.1"
                     /translation="MNKQQQTVLNMAGFIKGQSLTLLEKLDALDADEQATMCEKLHEL
                     AEELQNSIQTRFEVENSTER"
BASE COUNT          863 a          658 c          571 g          587 t
ORIGIN      
        1 aaaaaaaaac aataaaaaac accgcaaaaa tggattgtta acaaatgaaa atactcaatt
       61 cgaatctcat aacaaacata tcatcaacaa taagaaatca ccttctaaca tcatccaaaa
      121 atataaaaac acacccatca ccaaacatgg acgtaacaag tcatcgtcgt ttattcctga
      181 aagacggaat aggattgagc caaacaggaa aagcaacaca acttgtcatt atgtcgcatg
      241 gtggatggaa agagatctcc catccacaaa cactattcac gcgtcaaaaa ggcgatggat
      301 ggactgtagt ccccaaaaac ctaagaattg atttttatac aaaagacaac gacttcacaa
      361 agggactaag cgttctttca gaggtaaaca aacgccatac tgaagctcaa aaagggttaa
      421 caccatcact aaacataagc aaagatgacc taaaagttct agcgaacgcg cgcaatatac
      481 ctcaatcaaa attagaagaa gaaatgatgt cacaatccat atatagaaaa gaatacgcaa
      541 caagtaatga gaagataaaa aactatgctc tatattacca tgaacaagcc caaaatatta
      601 tacaaagaca tcaagatggc ttaggaaaca aaaatattga tatagcattt ataactgata
      661 aaaatcataa gaagcacctt tctgacatat ttaaagtaat aaatgaatca ggagtaaaat
      721 atgatgtaat tcactttggc gcttgccgag taaatagaga ggagaaataa tcatcattta
      781 ccataatccc ttaattgtac gcaccactga aacgcgctga acgcgattct gacgcagaca
      841 ccacaaaaat agatgtttta ccccggaaaa acaggaagga tgcgtcagga tcgttttcag
      901 ctcgctgcat agctatgcat gaaagcgaat ggagatcact ttgggagctt accgtgttca
      961 taccgtctgt tttcaacagt tttctccccg ggaagctaat ctgccataag cctggataac
     1021 agggcacggt gatactccgt aatagcgatc agcacctccg catactccct gtccccgata
     1081 cgcttgccgt cgataaagag ttttttctgt aacaccccca gtctcataac ttctttcagt
     1141 acccgatcat cagtcagtga gttaacgttc ttaccgagag ctgccgcccg taaaaaaccg
     1201 gaaacggtct tgccgcattc agcagccctt tttctgattt cctggtcttc ttctgccgtc
     1261 agacgaacag ggcgactgat agcccgcctg cgcgtattac ttccacttcg ttttgtcata
     1321 aaacatggct ccgtatctga catgggtgtc ggggcaaagc cctgaccagg gcaattgtaa
     1381 tagcgtgcat gtatgcgcgg tataacaatt gcacatcctg tcctgtcagc aagctcgaat
     1441 taccgacaaa ggcacggcag ttttttggca gttacagtgt tgtctgacag aaatgcccgt
     1501 caaaaagcca ggcggcagaa tagcggcagc aaaacagtcg aaaagtggta cgcgatataa
     1561 tcacataacg cagatgacag acagaacgga gaaaacgaaa agatgaacaa gcagcagcaa
     1621 accgtactca acatggcggg attcataaaa ggccagagcc tgacgctgct cgaaaaactg
     1681 gacgcactcg atgctgacga gcaggccacc atgtgtgaga agctgcacga actcgcagaa
     1741 gaactccaga acagcataca gacacgcttt gaagtagaaa atagcacaga gagataacgc
     1801 tcaggacagg atgccgaacg gcacaacaga gcgtaaggag aaaatgtcac ataaggcgct
     1861 cttccgcttc ctcgctcact gactcgctac gctcggtcgt tcgactgcgg cgagcggtgt
     1921 tagctcactc aaaggcggta atgcggttat ccacagaatc aggggataac gccggaaaga
     1981 gcatgtgagc aaaaagccga aggcagggac aaaggccgcg caggtggcgt ttttccatag
     2041 gctccgcccc cctgacgagc atcacaaaaa tcgacgctca agtcagaggt ggcgaaaccc
     2101 gacaggacta taaagatacc aggcgtttcc ccctggaagc tccctcgtgc gctctcctgt
     2161 tccgaccctg ccgcttaccg gatacctgtc cgcctttctc ccttcgggaa gcgtggcgct
     2221 ttctcatagc tcacgctgtt ggtatctcag ttcggtgtag gtcgttcgct ccaagctggg
     2281 ctgtgtgcac gaaccccccg ttcagcccga ccgctgcgcc ttatccggta actatcgtct
     2341 tgagtccaac ccggtaagac acgaattatc gccactggca gcagccactg ataaccgaat
     2401 tagaggagta agacttgaag tcatgcgcct gttaaggcta aactgaaaga acaagttttg
     2461 gtgactgcgc tcctccaagc cagttacctc ggctcaaaga gttggtagct ctgagaacct
     2521 tcgaaaaacc gccttgcagg gcggtttttt cgtttacagg cagtagatta cgcgcagaaa
     2581 aaaaggatct caagaagaac ctttaatttt ttttcacact tggtatccta ctttaaccca
     2641 taaaataaac acttacaccg acacgccctt aaacaaaag
//
LOCUS       DAJVUN010000291         2599 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.296, whole genome shotgun sequence.
ACCESSION   DAJVUN010000291 DAJVUN010000000
VERSION     DAJVUN010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.296"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..513)
                     /locus_tag="OQQ76_004013"
     CDS             complement(<1..513)
                     /locus_tag="OQQ76_004013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HCS1970295.1"
                     /translation="MGNYIRPLSDAVFTIASDDQWIESLAIQQLHTTANLPNMQRVVG
                     MPDLHPGRGYPIGAAFFSVGHFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSD
                     LDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDA
                     QHLQLLVHSGS"
     gene            complement(759..1211)
                     /locus_tag="OQQ76_004014"
     CDS             complement(759..1211)
                     /locus_tag="OQQ76_004014"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1970296.1"
                     /translation="MNNIQIRDYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQI
                     DESRWKEKLAKSQVRVAVINAKLVGFITCVEHYIDMLFVDPEYTRRGVASALLKPLIK
                     SESELTVDASITAKPFFERYGFQTVKQQRVECRGEWFINFYMRYKQQH"
     gene            complement(1208..2260)
                     /gene="dinB"
                     /locus_tag="OQQ76_004015"
     CDS             complement(1208..2260)
                     /gene="dinB"
                     /locus_tag="OQQ76_004015"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HCS1970297.1"
                     /translation="MKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTAN
                     YPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLD
                     EAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQ
                     FVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFG
                     HILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKV
                     KPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLH
                     VTLLDPQMERQLVLGL"
     gene            complement(2319..>2599)
                     /locus_tag="OQQ76_004016"
     CDS             complement(2319..>2599)
                     /locus_tag="OQQ76_004016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000460600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970298.1"
                     /translation="TNDGGATSKKNTGNTTTSLGNGMLMCQELYNRSTSELTNEQLQA
                     RINCGKNVRVENGKSTFSDAANEQASKVLKSGNALRKYSVNPNKKGTY"
BASE COUNT          673 a          645 c          601 g          680 t
ORIGIN      
        1 cgagccgcta tgaaccaaca gttgcagatg ttgtgcatcc agacctgcta gtgcaaacag
       61 ttcagcgttg atgatttgat caacttgttg cagttcagcg aaatgattgc cgccaccgat
      121 agagccaagc gagctgcacc aaggatgctg tgcaaatgct gacggcaggt tttcctccag
      181 ccagctttct tcagcaacgt catccagatc tgataatcgc ttttcaaact tatcggcgtt
      241 gtatttgcga gcgagaatat ctgtttgcca tagcgccata ccgcagccga tatcattgcc
      301 gaccagtgcc ggataaaaat gaccaacaga gaagaacgct gcgccaatcg gatagccgcg
      361 tccgggatgt aaatctggca tccccactac gcgctgcatg ttgggtaaat ttgccgtggt
      421 gtgtaattgt tggatcgcta aactctcgat ccactggtca tcagatgcga tggtaaatac
      481 cgcatcggat aagggacgaa tataattgcc catataccat tccgtaaata gactcgtcat
      541 acttcaagtt gcatgtgttg cgacttgaat tattgagagt aacaattaaa aaatcaggaa
      601 atagcagacg aatccagggc aagaaaaaaa gaattaatcc tggaaaggtc tgcaaagagt
      661 cattgataaa ggatttgtca tgatttacct ccttgcagtt tgtggaataa gaaaacgcgc
      721 acatactagg cttgcgttat tttcattgca agctggattt aatgttgctg tttataacgc
      781 atataaaaat taataaacca ctctccccga cattcaacgc gttgctgctt aactgtctga
      841 aaaccataac gttcaaaaaa gggttttgcg gttatgcttg cgtccaccgt aagttcggat
      901 tcagacttaa tcaaaggttt taacaaagcg ctggcaaccc cacggcgggt gtattcaggg
      961 tcaacaaata acatatcgat atagtgttca acgcaggtaa taaagccgac cagttttgca
     1021 ttaatgactg caacccgcac ttgtgatttc gcgagtttct ccttccagcg agattcgtca
     1081 atctgcgccc aggcggcaat ttgttgtggt gaataatgct gactggcagt catcgtaacc
     1141 gctctaatga aaatagcgca tagttgctga aaatcgccag gctgatagtc tcttatttgt
     1201 atgttattca taatcccagc accagttgtc tttccatttg cgggtcaagc aacgtcacat
     1261 gcagccccac cagtcgcaca ccgcgcccgc cgcggcgttc atcccaggtt ttacgcgcgg
     1321 tggcgattaa gtcagcttta ttcagccgcg gccagacgtg ctcctgagtg gtttgctgaa
     1381 aatcatcaaa ctttaatttc accccctggc gagcaatcag taaatcaggt ttcacctttg
     1441 ccagacggcg ttcaagttcc ggatacagcc gctcgataat cgcttcacat tcagaccagt
     1501 ggtggatatc ttccgccatc gtgcgttcca cgccgacgga ttttcgcaac cgttcgctgt
     1561 taacgtcgcg ctcgtcaatc ccctgactac gctcccacaa aatgtggcca aatttgccaa
     1621 agcgtttaag cagcatcacc agatcacact tttgtacatc accgcaggtt cgtagcccca
     1681 tcgcttccag ttttgccgcc gagactttgc cgacgccggg gatttttgcc agtggtaagg
     1741 tttgtaaaaa tgccggaact tctgccggcg taatcacaaa ctggccgttg ggtttattca
     1801 tgtcggaggc gattttggcg agaaacttta cgggtgccac gcccgcagac gccgtcagtt
     1861 gcagctcgtt gaaaatcgtc tggcggattt cctgggcgat gagggtcgca gaaccgtggc
     1921 aatggacgct atcggtgacg tcgagataag cctcatccag tgacaacggt tcaatacgcg
     1981 aggtgtagcg cgagaagatt tcgcggatat gatttgaggc ttctttgtag gcgtcaaagc
     2041 gccccggaag caaggtgaga tgcgggcata atttgagcgc catccctgtc ggcatagcgc
     2101 tacgtacgcc aaatttacgc gcgggataat tggcggtact gatcaccccc cgacgttcgc
     2161 ggctgccgcc aatagcaata gggatatcgc gcagggcggg attgtcgcgc atctccaccg
     2221 ccgcgaaaaa gcagtccata tccacatgaa taatcttcac tttcttatac accctgtgta
     2281 tttatacatg caaagagatt atacacacaa aagcaaaatc agtaagtgcc cttcttattc
     2341 ggattcacag agtacttccg taaagcatta cccgacttaa gcacctttga agcttgctca
     2401 ttagcggcat ctgagaaggt gctttttcca ttctcaactc tgacattttt accacaattg
     2461 atacgggctt gaagttgctc attagtgagt tcactcgtag agcgattata tagctcctga
     2521 cacatcaaca taccgttacc taagcttgtc gtagtgttac cagtattctt tttactggta
     2581 gcaccaccat catttgtag
//
LOCUS       DAJVUN010000292         2588 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.297, whole genome shotgun sequence.
ACCESSION   DAJVUN010000292 DAJVUN010000000
VERSION     DAJVUN010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.297"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            362..2323
                     /locus_tag="OQQ76_004017"
                     /pseudo
     CDS             362..2323
                     /locus_tag="OQQ76_004017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234659.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
     gene            2459..>2588
                     /locus_tag="OQQ76_004018"
     CDS             2459..>2588
                     /locus_tag="OQQ76_004018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HCS1970299.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWRRQIDKRAAEK"
BASE COUNT          625 a          619 c          767 g          577 t
ORIGIN      
        1 actggtgttt tgtcccgacc cttatccttt ctgtgcgggt tcaggtgctg atactgaact
       61 caccgggagg cacccggcac catgcaatgg cacatagcgc cactctccag cccctctccg
      121 gaggggcttt cttatggaca aaaaaatcct gcgctgggag acgcgggcgg caaggaataa
      181 acaacaaaac gtgaagtaat atttcagctg gcgaataata tccgacagta atcactctgc
      241 gcaatagcgc ggcctttttc atattgcggg ctgttgtcta tcttctgcca ttgtcctgta
      301 acttccggac ttcagcccgc tcctcatttt actcacaata ttatccaggc cgggaggatt
      361 catggcattt aaacactatg acgtggtcag ggcggcgtcg ccgtcagacc ttgcggagcg
      421 actgacacaa aaactgaagg aggggtggca gccatttggc agtccggtgg ccatcacgcc
      481 ttataccctg atgcaggcca ttgcggcgga aggtgatgtc accacacctg tggtggtgaa
      541 gccgtcggat ggagaaggcg cagttatcag caccaccagc aacccggagt attaatttgt
      601 tgttgccctg gccgggcagt caaacggtat ggcgtatggt gaagggcttc cgctgccgga
      661 gacatatgac cgtccggacc cgcgtattaa acagctggcg cgtcgcagca ctgtcacgcc
      721 gggtggtgcg tcctgtaact acaatgacat tattcctgcg gaccactgcc tgcatgatgt
      781 tcaggatttg agtaagtttt cacacccgaa agccagcgca gctcagtatg gatgcgtggg
      841 gcagggatta catatcgcga agaaattgtt gccgtttatt ccggcgaatg ccggtattct
      901 tctggttccg tgctgccgtg gtggttctgc atttttggcg ggcgatgaag gtaccttcag
      961 cgaatccacc ggcgcaagcg agacctcggc acgctggggt gtagataagc cactgtacaa
     1021 ggacctgctt acccgtactc aggccgcact gaaggctaac cctaaaaata ttctgcttgc
     1081 agtggtctgg atgcagggcg agtttgattt gaaacagggt gcatacgcca ctcagccggg
     1141 gctgtttgat tccatggtgg aaaaatatcg ttctgacctg tcggaattcg gaggtcagtg
     1201 tctcgggggc tctccgtcat cggttccctg gatttgtggc gacacgacct actactggaa
     1261 gcagacttat tcttcgcaat acgatgcggt gtatggtgca tacaagacga aatccgcaaa
     1321 aaaaatcttc tttgtgccgt ttatgacgga tgaaaacggg cgaaatgtgg gtaccaacga
     1381 gccgtcagaa gatccggatg ttgcggatat tgggtattac ggagccggtg gtcgaacgga
     1441 cgccaaaacc tggacgacgg ccgaccgtaa aacgcatttt ggatcatggg cacgtcgtgg
     1501 gattatttcc gaccgtctgg caacggcgat tcttgtgcat gccgggagaa ccgctgaatt
     1561 cattaccgga aaacagcctg atacggtgaa gcccaccgga ccttccggtg aaggtacgga
     1621 gagagagccg gaagccccgg tcagtaaccg aaccctgatg agtctgctgg cgtccggcga
     1681 agacctggca tcacagggct ggcgctatta tcacaaaccg gcgagtggag acaatgttaa
     1741 caaaaacatt gctgaagcgg tggtcagtga tgcgggggct acgggaggta aggccctgca
     1801 actgaataaa ccggaaaacc acatctggtt tctggagcat gatgcagccg gacagggagt
     1861 ggagttactg aagaaggggg gacgtgtgag cgtacagttt aagttgccgg gttcactggt
     1921 gccgaatcgg tttgccccgg gcatttactg gcagttgtcg tccctgccgg agggagtgac
     1981 gctggcagag gaaggcaacg acatgctgat gtccttcttc ctgcagacgg atgcgacgaa
     2041 cctgaacgcg atgtaccaca agaagccgaa tgcgaagctg gatacgttcg gggtctttga
     2101 taacggatgg cacacactgg attttgagtt tgccggaaac aacagcattc aggtgacgcc
     2161 ggtactggat gagaaacggg ggacgccgtt cacactggtg aaatctccgg catcaggggc
     2221 ggcggacaaa ctgcaactga caggcatatc aaaggtggcg acatatacgc tgctgattgc
     2281 cagtgtgaag gtggaagtga acaacgcgga tgccgcggca tgataaaaaa agccgccagc
     2341 ggcaggaacg gaagctggcg gaggtaatcc caatggagaa tgtaaagaaa agatgctttc
     2401 gtataccggt tttttaaatg aaaacagttc tcattgtcaa ccataacggt aagaaactat
     2461 gacatttatt catcaggtga tgctgtactt ctgtacggcg gtctgtgtgc tgtatcttct
     2521 ttcgggtggg tacagggcag tgcgcgattt ctggcgcagg cagattgata aaagggccgc
     2581 agagaaaa
//
LOCUS       DAJVUN010000293         2584 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.298, whole genome shotgun sequence.
ACCESSION   DAJVUN010000293 DAJVUN010000000
VERSION     DAJVUN010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.298"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(7..318)
                     /locus_tag="OQQ76_004019"
     CDS             complement(7..318)
                     /locus_tag="OQQ76_004019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HCS1970300.1"
                     /translation="MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGG
                     VLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWN
                     Y"
     gene            481..577
                     /gene="ffs"
                     /locus_tag="OQQ76_004020"
     ncRNA           481..577
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="OQQ76_004020"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            697..1050
                     /locus_tag="OQQ76_004021"
     CDS             697..1050
                     /locus_tag="OQQ76_004021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HCS1970301.1"
                     /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS
                     DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD
                     GKRMIYGGFESIIDE"
     gene            complement(1092..>2584)
                     /gene="pdeB"
                     /locus_tag="OQQ76_004022"
     CDS             complement(1092..>2584)
                     /gene="pdeB"
                     /locus_tag="OQQ76_004022"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeB"
                     /protein_id="HCS1970302.1"
                     /translation="PVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDALQ
                     ELERWQGAACSEAHLMEMRRVSYSYRYIQEVVYIDNNIPQCSSLEHESPPDTFPEPGK
                     ISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGNA
                     HNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPFPEMNISIITWASTKMLQKG
                     WHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLAN
                     GKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHP
                     QQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALELTEREFADPKTSAPIISRY
                     REAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKL
                     KMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL"
BASE COUNT          631 a          639 c          663 g          651 t
ORIGIN      
        1 agagggttag tagttccagc gataacgctg caagtcgatt tgcccgcttc ccgataccat
       61 cacaccttct gccagtaatg cctgtcgctg acgctgtaaa tccggtccgg ttagcgaaat
      121 tgtgccgtgg cgattaacca cccggtgcca gggtaaggtg ctgccttcag ggagacgctt
      181 taacacaccg cccacctggc gcgcggcgcg gggcgatccc gccagtttcg ccacatcacc
      241 gtaagtggtg acatagcctt cgggaatagc ggcgacgatt tgccagacgc gttggggaaa
      301 tgaatcttct ttttccatct tttcttcctg aggtaatttt tcagcataat ctggaaaaac
      361 gcccgagtga agtcgcattg cgcaagaaac cagcatctgg cacgcgatgg gttgcaatta
      421 gccggggcag cagtgataat gcgcctgcgc gttggttctc aacgctctca atgggggctc
      481 tgttggttct cccgcaacgc tactctgttt accaggtcag gtccggaagg aagcagccaa
      541 ggcagatgac gcgtgtgccg ggatgtagct ggcagggccc ccacccattt ctgcctccca
      601 ccgtttcgtc aaaaaaaccc aacatggcta aactttaacc acaactgacg tcgcaagaat
      661 tgtctggctg cgcagtacgc ttcggaggta tgtctgatga agtatgttga tggttttgtg
      721 gttgccgttc ctgccgataa aaaggatgcc tatcgggaaa tggccgctaa ggctgcgcca
      781 ttgtttaaag agtttggcgc gcttcgtatt gtcgaatgct gggccagcga tgtaccggat
      841 ggcaaagtga ccgattttcg tatggcggtg aaagcggaag agaatgaaga ggttgtcttt
      901 agctggattg aatacccttc aaaagaggtc cgcgacgctg ctaatcaaaa gatgatgtcg
      961 gacccacgga tgaaagagtt cggcgagtcc atgccgtttg acggcaagcg aatgatctat
     1021 ggcggattcg agtcaatcat cgacgaatag gtagcgtgac gggctgtgcg gcgtgccgtc
     1081 agcccaaaaa ttcacaaatg ttgctcggcc cagcgtaaga aatcttcttt cggtaatgcc
     1141 ttgctgtaga gccagccctg accgtagtgc acgccatgct ggcgtagcca ctcttcttgt
     1201 ttactggttt cgattccctc cgctaccatt ttcagtttca gtgtttttgc catttcgatg
     1261 atatgcggcg tgacattttt atattccagc gcatcaacga aagatttatc gatcttcaga
     1321 atgtcgacat ccagatcctg taaataactt aaacttgaat atcccgtacc aaaatcatca
     1381 agataaattt catggcccgc ctcccggtag cgagaaatta tcggggcgct ggttttcgga
     1441 tcggcaaact cgcgttcagt gagttcaagc gcgatctgtc tgggattaac ctgatagtga
     1501 ttgatcattt cacgcagcaa ttgcgggatt ttttccgagg tgagcacggt ggattcaaga
     1561 ttgatcgaaa tatgctgctg tggatgctga cgcagccagt cgcccatatc ttcaaagacg
     1621 cttcttataa tcagtagcgt caatggctca gaaaggcctg tttgctgtgc cagcggaata
     1681 aaactatctg gtgacaacca actaccgtct gtctgcggcc agcgcgccag tgcctcagca
     1741 ccgacaattt tgccattggc taaggagaca atcggctgat agtgcacgca aatatcacga
     1801 ttttcgatag catcctgcag ccgatgatgc ggtgactgga tacggcgcaa aatacgcagc
     1861 acaaacatcg ctgccagcag gccaatcacc aacccgagcg gtaaccaaat aaagacttgc
     1921 cgatgccagc ctttctgcaa cattttcgtt gaagcccagg tgatgatcga aatattcatc
     1981 tccgggaagg gcaggatatc gtaaatgatt ccattatttt cgatatgctc accgggtgtt
     2041 ttttgtagcc tggtaataat tccctgagca atttcatcgc tgctggttat gacaacgtta
     2101 tgggcattgc caataatggc ggcatcaatt tgccatgagc tatagggaat gacatcaata
     2161 aaggaagcgg ggtcgatcat gacgacataa tgtgccgttc ccatggcgac catgtaacgg
     2221 ataatgccta aatcgttatg cgatgttaac cagacacgat aaccatcttt cgaaatttta
     2281 cctggctcgg ggaaggtatc gggcggactt tcatgctcca gagacgaaca ctggggaatg
     2341 ttgttatcga tataaaccac ttcctgaata tagcgataac tgtaagatac ccgacgcatt
     2401 tccatgagat gggcttcgct acaggcagcg ccttgccatc tttccagctc ttgcagcgca
     2461 tctttccctt gtgtcgccac cttattggcc cgaatagcga cgcgggagga ataggtatcc
     2521 agctcttcaa taaacgatgt ttctacctgc tgatgggcca gccagatgct taagccgaca
     2581 ggca
//
LOCUS       DAJVUN010000294         2517 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.299, whole genome shotgun sequence.
ACCESSION   DAJVUN010000294 DAJVUN010000000
VERSION     DAJVUN010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.299"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1009..1968
                     /locus_tag="OQQ76_004023"
     CDS             1009..1968
                     /locus_tag="OQQ76_004023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid segregation protein ParM"
                     /protein_id="HCS1970303.1"
                     /translation="MLKVSCDDGSTNVKLAWLEDGEVRTSLSGNSFKEGWNPGLFNAG
                     KVYNYVVDEKKYTYDLGSTAVIGTTHVSYQYSTTNLLAIHHALLTSGLQPQDVELTVT
                     LPVTEFFDNDNQPNEERIERKKANVLREISLNKGETFKIKKVNVMPESLPAAFESLKK
                     DKVNKLERSLIIDLGGTTLDCGLILGAFEGISEIRGYSEIGTSRITHTVMNALTKAST
                     PCNYFIADELIKNRHDNEYLQTLINDVAEIKNISHIIDREVKSLAESIRQEISTFSGM
                     NRIYLTGGGAELIYPHIKQYFPNLKVNKVDEPQFALVKAMVHA"
     gene            1968..2363
                     /locus_tag="OQQ76_004024"
     CDS             1968..2363
                     /locus_tag="OQQ76_004024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid partitioning/stability family protein"
                     /protein_id="HCS1970304.1"
                     /translation="MESSDPKKRKKVVAYLHPALYPQDNLTQQTIDSLPVQMRGDFYR
                     QSLICGAALYSVDPRLLTLISGFFSEKITAENLVKLIEQTTGYTSTSIDISVLKNIIE
                     ASSENKSESITSKDDFEEQTRRNLSMLKK"
BASE COUNT          832 a          572 c          516 g          597 t
ORIGIN      
        1 cgtaatgaaa gacccagtgg aagtctgccc gctttcgcgt agggtaatgt tgccgggctc
       61 aacccttatc cggtccatta cagactggca ttcgcttttt ccaccttctt ttacccgcac
      121 cgccaacagt atcccttgcg gttaacctgc ctcacgaggc agcgatacgg gcttaccatg
      181 ttccacctga ataacaacag taggttagac tctgctcaca acaccggtgg tttattgtcc
      241 gtgtacccct agcaaacaga ggagtaacca accacatacc ttttggttca agcctgtcag
      301 catctttggc ttgttctggt taacgacgct tcagcagttc acatatgtta gtcatgctac
      361 cgagcctaga cctcctccgc ctgatgctgg cagattacat gtaacctcac ggtttcatgc
      421 gatccgaaga tccggtttca ttgtcctgac agcttcacac cccaccgtta ccagtgacgc
      481 atgtgtcagt aggctactga tgacggaaca tcaggttccc tgacggaatc gaactccgct
      541 ggaacaatta ttcaggcgac ttcatgtcgc acattcgagc accagtttgg catgggaatt
      601 ctcctctcac atgcggcctc catcaggccg tgccgcacct gtaaccgggc gaccgcatac
      661 gaatgcaggt gcggccccga agccgcagcg cgtggaggag gaacgacgaa acgtgaccgg
      721 gtgaggaggc cggcgacagc gacacacttg catcggatgc agcccggtta acgtgccggc
      781 acggcctagt taagtagtat ccgtctcagt tcgtggcgca aaatgagaaa ccaataagaa
      841 ctcaaaatga accacaacaa gaacataaag agactctaaa agaacaacac cgcttgacat
      901 agactcaaaa tgagtcacaa taagaaacaa taaaaaactc aaaaagatac accgacataa
      961 aggatgctca atttgagata aacacaaact caaaacgagg caaaaagaat gctaaaagta
     1021 tcatgcgatg atggttcaac taacgtaaaa ctggcctggc ttgaagatgg cgaggtaaga
     1081 accagtctgt caggaaacag ctttaaagaa ggctggaacc cgggactgtt taatgccggc
     1141 aaagtgtaca attacgtcgt ggatgaaaaa aaatacacct atgatttggg aagcactgct
     1201 gtcataggta caacacatgt cagttatcaa tacagcacca ccaatctgct tgccatacat
     1261 catgcactgc tgacatccgg ccttcagcca caggatgtag aactgacagt aacattacct
     1321 gtgaccgaat tctttgataa tgacaatcaa ccaaatgaag aaagaataga aagaaaaaag
     1381 gcaaatgttc tccgtgagat atctctgaat aaaggggaaa catttaaaat taaaaaagtt
     1441 aatgtaatgc ctgaatcttt gccagctgca tttgaatcac taaaaaaaga taaagtaaac
     1501 aaacttgaac gcagcctgat tatcgatctt ggaggaacca ctctggattg tggtttaatt
     1561 ctcggtgcat ttgaaggcat ttctgaaatc cgtggctatt cagaaatcgg gacatcccgc
     1621 atcactcata ccgtcatgaa tgcgctgacg aaagcctcca caccatgtaa ttattttatt
     1681 gctgatgagt taataaaaaa cagacacgat aatgaatatc tccagacatt aataaatgat
     1741 gtagctgaaa taaaaaacat ttctcatata atagacagag aagtgaaatc tctggcagaa
     1801 agcatcaggc aggaaatttc aacattctca ggaatgaacc gaatctatct cactggcgga
     1861 ggagccgagc ttatttaccc tcacataaag caatatttcc cgaatctgaa agtgaacaag
     1921 gtggatgaac ctcagtttgc attggtgaaa gcaatggtgc atgcgtaatg gaaagcagtg
     1981 atccaaaaaa aagaaagaaa gttgtggcat acctgcaccc ggcactttat ccgcaggaca
     2041 acctgacaca acaaacaata gactctctcc cagtacaaat gcggggagat ttctacagac
     2101 aatcccttat ttgcggagca gctctttatt ctgttgaccc ccgactgtta acgctaatca
     2161 gcggtttttt cagtgagaaa atcactgcag aaaatctggt gaaacttata gaacaaacaa
     2221 caggatacac atccacatca attgatataa gtgtgttaaa aaacatcata gaggcatctt
     2281 cagaaaacaa atcagagagc atcacttcaa aagatgattt cgaagaacaa accagacgca
     2341 atctttctat gttaaaaaaa taataaaaga agagcaggtt cagttaatta cctgctcttc
     2401 ttttatatat actaaaaaat cagattttta cgaatattca gattatcata aaaaatgcaa
     2461 cagacaggaa tgcaataatt ttgcattatc tcgttgcttg taatgcaaat atgcatt
//
LOCUS       DAJVUN010000295         2472 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.300, whole genome shotgun sequence.
ACCESSION   DAJVUN010000295 DAJVUN010000000
VERSION     DAJVUN010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.300"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..135
                     /locus_tag="OQQ76_004025"
                     /pseudo
     CDS             1..135
                     /locus_tag="OQQ76_004025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309413.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
     gene            385..1251
                     /gene="ospB"
                     /locus_tag="OQQ76_004026"
     CDS             385..1251
                     /gene="ospB"
                     /locus_tag="OQQ76_004026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspB"
                     /protein_id="HCS1970305.1"
                     /translation="MNLDGVRPYCRIVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
                     VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
                     IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
                     VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
                     LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
                     QKKTFIINKELD"
     gene            1580..2320
                     /gene="phoN2"
                     /locus_tag="OQQ76_004027"
     CDS             1580..2320
                     /gene="phoN2"
                     /locus_tag="OQQ76_004027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAP2 family phosphatase PhoN2"
                     /protein_id="HCS1970306.1"
                     /translation="MKTKNFLLFCIATNMILIPSANALKAEGFLTQQTSPDSLSILPP
                     PPAEDSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
                     ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDEKMAITGSYPSGHA
                     SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
                     NTPEFTKSLSEAKKEFEELNTPTNELTP"
BASE COUNT          823 a          435 c          468 g          746 t
ORIGIN      
        1 gcggtaagag aagttcatca tacttggcgc agttacgcga tgtttctgct agaggtgatg
       61 ccgtaaagaa cggcagaaca ttaccggaac aagatagcgg tctacctgca ctggtatcag
      121 acccggggct tccccggatg atctccacgg tactttaggt actgtgtcta tattatgtag
      181 gtaggatcaa ttaactttgt agttgaaatt ctttcattga aataatgaat aaaaaagaca
      241 aaccgcatta aacaatgcca gaatataatt gcatttttgt tccgtttttt taaatcatag
      301 tatacaaaga agcttgcata ctatatgaaa atataacacc ctttactatg atgtttataa
      361 aacaatatat ggagtcatgt aggtatgaat ttagatggtg ttagaccata ctgtagaata
      421 gtcaataaaa agaatgaaag catatcagat attgcatttg cacatataat aaaaagggta
      481 aaaaattcat catgtactca cccaaaagca gcattggttt ttttaggaga gaaaggtttt
      541 tgtgatagca atgatgttct atctattatg ggacaacaaa taccaagagt atttaagaac
      601 aagatgttat atgattatgt ttttaaaaat gaaaaaagta aaaatgattt tctaaaaatg
      661 gctgaatcat ggctaccaca gagtgaacca atagtaataa ataatgatga tgacgcattg
      721 aatgctgctg cttatttttc tgtaaaaaaa gcgaaaataa aaacagtaaa cgatactgat
      781 tttaaagagt ataataaggt ttatattctt gggcacggta gtcctggttc tcatcaatta
      841 ggccttggtt cggaacttat tgatgtacaa acaatcattt caagaatgaa agactgtggt
      901 attctaaatg tgaaagatat ccgttttact tcatgcggct ccgctgataa agtggctcct
      961 aaaaatttta acaatgcccc tgctgaaagt ctttcttgta tccttaactc tctgcctttt
     1021 tttaaggaaa aagaatcttt gctagagcag ataaaaaaac accttgaaaa cgatgagtca
     1081 ttgagtgatg gtctaaaaat atccggctat catggatatg gagttcacta tggtcaagag
     1141 ctttttccct actcacatta tcgttcaact tcaattcctg ctgatccgga gcatacagta
     1201 aaaagaagct ctcagaaaaa gacttttatt attaataaag aactggatta gtataaaatt
     1261 tttaacctat agttaattgt ttgcatttaa gatgaagtta ttttttcttt agtagaaaag
     1321 tgcttcccta tgagggaaaa tcacaaatca tcataataca gagacaaaac gatacgaaca
     1381 aatagataaa aaacatcatt cttttaccac attatttttc gtgaatatga aaaataatgt
     1441 tattacttta atataagact attttttgtt tttccatcac tctgttcaaa tttttccgca
     1501 tgacttgtgt tttttgtaac acagctcgtt ttttacagct gaccaaaatc atcaattaat
     1561 tatgctaagg aaataaatta tgaaaaccaa aaactttctt cttttttgta ttgctacaaa
     1621 tatgattttg atcccctcag caaatgctct gaaggcagaa ggttttctca ctcaacaaac
     1681 ttcaccagac agtttgtcaa tacttccgcc gcctccggca gaggattcag tagtatttca
     1741 ggctgacaaa gctcattatg aattcggccg ctcgctccgg gatgctaatc gtgtacgtct
     1801 cgctagcgaa gatgcatact acgagaattt tggtcttgca ttttcagatg cttatggcat
     1861 ggatatttca agggaaaata ccccaatctt atatcagttg ttaacacaag tactacagga
     1921 tagccatgat tacgccgtgc gtaacgccaa agaatattat aaaagagttc gtccattcgt
     1981 tatttataaa gacgcaacct gtacacctga taaagatgag aaaatggcta tcactggctc
     2041 ttatccctct ggtcatgcat cctttggttg ggcagtagca ctgatacttg cggagattaa
     2101 tcctcaacgt aaagcggaaa tacttcgacg tggatatgag tttggagaaa gtcgggtcat
     2161 ctgcggtgcg cattggcaaa gcgatgtaga ggctgggcgt ttaatgggag catcggttgt
     2221 tgcagtactt cataatacac ctgaatttac caaaagcctt agcgaagcca aaaaagagtt
     2281 tgaagaatta aatactccta ccaatgaact gaccccataa agctggacag cctgtatcag
     2341 gctatggagg gcccatagac aaatctaccc tatatgagca taggaggagt ctatgggcac
     2401 accacgtttt acccctgaat ttaagggatt actggaaagg ctgggacata tccctccggc
     2461 agaagcagaa aa
//
LOCUS       DAJVUN010000296         2450 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.301, whole genome shotgun sequence.
ACCESSION   DAJVUN010000296 DAJVUN010000000
VERSION     DAJVUN010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.301"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            67..396
                     /locus_tag="OQQ76_004028"
     CDS             67..396
                     /locus_tag="OQQ76_004028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001325657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HCS1970307.1"
                     /translation="MSKPRWTIEQKRQHVAAWRASGLTRQQYCELNDIPFTSLREWPQ
                     DVAKAERRANEPTVLPVHIAPPLHADVPQPVTNEPVTLFLPGGVRMCCQPSQLTDVFR
                     ALKYAQS"
     gene            383..775
                     /gene="tnpB"
                     /locus_tag="OQQ76_004029"
     CDS             383..775
                     /gene="tnpB"
                     /locus_tag="OQQ76_004029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000950651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1970308.1"
                     /translation="MLSPDNVFIAIKPVDMRRGIDSLTQYIQDELRSTWHEGAAFVFV
                     NKARSRIKVLRWDKHGVWLCTRRLHKGSFRWPRANDAAWHLTPDEFNWLIAGVDWQQV
                     KGHDLTKWVWQNEPELRPENTQNTLLTQ"
     gene            782..2383
                     /locus_tag="OQQ76_004030"
     CDS             782..2383
                     /locus_tag="OQQ76_004030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc49 family transposase"
                     /protein_id="HCS1970309.1"
                     /translation="MNIRIWSGILPCMDISALNTTNDIEKLRAMALAMVQEVMSENAE
                     KERELLEKSRRIQLLEEMLKLVRQQRFGKKCETLAGMQRSLFEEDVDADIAALTAHLD
                     KLLPQSPEEDEKASRSRPIRKPLPVHLPRVEKIIQPDTDHCPECDEPLHYIRDAVSEK
                     LEYIPAHFVVNRYVRPQYSCPCCQKVFSGEMPAHILPKSAVEPSVIAQVIINKYGDHL
                     PLYRQQQVFARSDVGLPVSSMADMVGAAGAALSPLAALLHRELINRPVVHADETTLKI
                     LNTKKGGKSCSGYLWAYVSGERTGPSVVCFDCRTGRSHEYPENWLQGWGGTLVVDGHK
                     AYRTLANKVPEITLAGCWAHARRGFADLYKISKDPRAAIAVKKIAGLYRLEKKISSRP
                     VEKIRQWRQRYARPILEELWSWLEEQEPQCSPGKALHKAIAYALSHRVELSRFLEDGA
                     VPLDNNVCERAIKNVVLGRKSWLFAGSQMAGERAAQIMSLLETAKRNGLEPHAWLTDV
                     LMRLPEWPEERLAELLPLEGFTFSG"
BASE COUNT          596 a          650 c          673 g          531 t
ORIGIN      
        1 cttcataggg atcttcggtc agttagtatt accgacatcc attcaccaac ttaccggaga
       61 taatcgatgt caaaaccccg atggaccatt gaacagaaaa ggcagcacgt tgctgcctgg
      121 cgcgccagtg gtcttacacg tcagcaatac tgtgaactca acgatattcc cttcacatca
      181 cttcgcgaat ggccgcagga tgtcgcaaaa gctgaacgcc gggcaaatga accgaccgtt
      241 cttcccgttc atattgcgcc accactgcat gctgatgtac cacagcccgt cacgaatgag
      301 ccagtcacgc tcttccttcc cggtggagta cggatgtgct gtcagccgtc acaacttacc
      361 gatgtcttca gggcactcaa atatgctcag tcctgataat gtcttcatcg caattaaacc
      421 tgttgacatg cgccggggca tcgactcact gacgcagtat atacaggatg aactccggtc
      481 gacatggcat gagggagccg ccttcgtctt tgttaacaaa gcccgttcgc gtatcaaagt
      541 tctccggtgg gataaacacg gggtgtggtt gtgtacccgc cgtctgcaca aaggcagctt
      601 ccgctggcca cgtgcaaatg acgctgcctg gcacctcact cccgacgagt ttaactggct
      661 gattgccggt gttgactggc agcaggttaa gggacatgac ctgacgaaat gggtctggca
      721 gaatgaacct gaactgcgcc ctgaaaacac gcaaaataca ctgctaactc agtgaaaaat
      781 aatgaatatc cgtatctgga gtggtatact cccctgtatg gatatctccg ctctcaacac
      841 cacgaatgac atcgaaaaac tgcgtgctat ggcacttgcc atggtacaag aagtcatgtc
      901 ggagaatgcc gaaaaagagc gggaattact ggagaaaagc cggcgcatcc agcttctgga
      961 agaaatgctg aaactggttc gtcaacagcg cttcggaaaa aaatgtgaaa cgctggctgg
     1021 tatgcaacgc tccctattcg aagaggatgt tgatgccgat atcgccgcgc ttaccgcaca
     1081 tctggataaa ctgctcccgc aatcccctga agaagatgaa aaagcgtccc gttcacgccc
     1141 gatacgcaaa cccttaccgg ttcatcttcc acgggtggaa aaaattatcc agccggacac
     1201 tgaccattgc cctgaatgtg acgagccgct gcactatatc cgcgatgcgg tgagtgaaaa
     1261 gctggagtat attcccgctc actttgtggt gaaccgttat gtccgtccgc aatacagttg
     1321 tccctgttgc cagaaggtgt tcagcggtga aatgccggca catatcctcc cgaaaagtgc
     1381 cgttgagcca tcagtcatcg cacaggtgat catcaataaa tacggtgacc acctgcctct
     1441 gtatcgccag caacaggtct ttgcccgttc agatgtcggg ctgcccgtca gttcgatggc
     1501 tgacatggtt ggcgcggcgg gtgccgcatt atctcccctg gcggcgttac tccatcgcga
     1561 gttgataaac cgtccggtgg tgcatgcaga tgagactacc ctgaagatcc tgaacacgaa
     1621 gaaaggcggt aaatcctgct ccggttatct gtgggcatac gtcagtggag aaaggacggg
     1681 accgtcagtt gtgtgcttcg actgccggac cggacgtagc catgagtatc ctgaaaactg
     1741 gcttcagggc tggggcggga cgctggttgt cgacggacat aaagcttacc ggactctggc
     1801 aaacaaagtg ccggagatca cgctggccgg atgctgggcc catgcccgca ggggcttcgc
     1861 cgacctgtat aaaatcagta aagatccacg ggctgccata gccgtgaaga aaatcgcggg
     1921 gttgtaccgt cttgagaaga agatcagtag ccgccccgtg gaaaaaatcc gccagtggcg
     1981 acagcgttat gcccgtccga tactggaaga actgtggtca tggcttgaag agcaggaacc
     2041 gcaatgttct ccgggaaagg cattacacaa agccattgcc tatgcgctgt ctcatcgcgt
     2101 ggaactgagc cgcttcctgg aagatggtgc ggtgccgctg gataataatg tgtgtgaacg
     2161 ggccatcaaa aacgtggttc tgggcagaaa atcgtggctg ttcgccggtt cgcagatggc
     2221 gggagaacgc gccgcgcaaa taatgagctt gctggaaacc gcgaaacgca acggtctgga
     2281 gccgcatgcc tggttgacag acgtcctgat gcgtctgccg gagtggccgg aggagcgact
     2341 ggcagagttg ctgcctcttg agggatttac cttctccggg tgagtgatac ctgccgtcag
     2401 gtgttcgtgc accgggccat aacctgcagt cgggagttga actcctgacg
//
LOCUS       DAJVUN010000297         2448 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.302, whole genome shotgun sequence.
ACCESSION   DAJVUN010000297 DAJVUN010000000
VERSION     DAJVUN010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.302"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..938)
                     /locus_tag="OQQ76_004031"
     CDS             complement(<1..938)
                     /locus_tag="OQQ76_004031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858398.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1970310.1"
                     /translation="MIKSTNIQAIGSGIMHQINNIYSLTPFPLPMELTPSCNEFYLKA
                     WSEWERNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLALANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPRIFFSMGSSA
                     TISAPEHSLADAVTAWFPENKQSDVSQIWHAFEHEE"
     gene            complement(1328..1596)
                     /locus_tag="OQQ76_004032"
                     /pseudo
     CDS             complement(1328..1596)
                     /locus_tag="OQQ76_004032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001449236.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1705..1835)
                     /locus_tag="OQQ76_004033"
                     /pseudo
     CDS             complement(1705..1835)
                     /locus_tag="OQQ76_004033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612303.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(1833..1928)
                     /locus_tag="OQQ76_004034"
                     /pseudo
     CDS             complement(1833..1928)
                     /locus_tag="OQQ76_004034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001365624.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2306..>2448)
                     /locus_tag="OQQ76_004035"
     CDS             complement(2306..>2448)
                     /locus_tag="OQQ76_004035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS1970311.1"
                     /translation="RFKSRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFRIKYYQM
                     TA"
BASE COUNT          690 a          429 c          526 g          803 t
ORIGIN      
        1 tgctcttcat gttcaaaagc atgccatatc tgtgatacat cagattgttt gttttccggg
       61 aaccatgctg tcacggcatc agccagggag tgttctggag cggaaattgt ggcagaactt
      121 cccatagaga aaaatattcg aggaccagaa taatctggtc cggtggttat ttgttgtagt
      181 gtacgcatgg tatggccaga cagtggatta cctgcaacat ttacgaaggc attctgagct
      241 aatctcagga cactttccgg aagtgttgtc agattattat tcattagcac agccctgttc
      301 atactaaaag gtaattccgg tagttgttct ataaaattat tagccagagc cagcccttca
      361 agcttatctg gaaagggggg aatgctgtct aatctgtttc cagaaactac cagtaatttt
      421 agttccggtg gcaatagtgg cagaatatgc aatcggttat tatgaacccg taaatgagtt
      481 agattttcag gaagaaatgg taattctttt atcttgttat cacccgcatt aagctcttct
      541 aacgtctcgg gtaaggcagg taagctttcc agttgattaa attgagcatg tattacctta
      601 agcattggtg gtaaatcagg gagatgtgtt aataggtttt ttcttatttc cagtgttgtt
      661 atctgaggcg gtaaatctgg taatgttttt aaatctaact cagataaatt taattctgcc
      721 tcttgatttt gtaaacatat tttcagccta ttgaaggcga tattgcgttg ctcgcctggg
      781 gtaccgttcc tttcccattc actccaggct tttaaataaa attcattaca agatggagtc
      841 agttccatag gtaaaggaaa tggagttaac gagtatatat tgtttatttg atgcataata
      901 ccagaaccga ttgcctgtat attggttgat ttaatcatta taactaaaat ttcttatcaa
      961 cgataagaat tctagtgaaa tagaatatag cttattaatt ttaaaacagt ttgctttgta
     1021 ccctttctcc gggtattgct ttccccctaa gccgtctatg ggaaggagtc tgctgttatt
     1081 cctgagaatg gtaattcagc cataaaaagg tatttaaggt cattgcgtct ctccctgtac
     1141 tcgaataatg gtgaagaaag catgatgaat atatcacgat aacgttcagt acgtatcgag
     1201 gatagatgga gttactcctc tctgaaatag aattactgct ctattttttt ctgttttcag
     1261 aagttattag taacaaaccc tgatatattt ttttgaaaat ggagcttaaa cgagtctgaa
     1321 attaacttca gaaatcagaa taccgttggc tttgtttttc atcaattccg gcttcattta
     1381 tctttgtcaa ccattgtatt tctgtagctg tgaatttcaa ctttttcgtt cggttggtag
     1441 caggtatttg caattcgtat atggctgttt ttgtttatta aaaacagtac atccatctgt
     1501 agtaacagta gaagatacta atatagtatt tgatacttca gggatgatat tttcttgttt
     1561 tttgggaaga caagggaata tagtttgtgt aagcatatta cttccttatg ttatattttg
     1621 gtaaaaaatt tattttttta cattatagtc ggctaaatga agtttactgt aaaaaaacga
     1681 tactttttcg ggtggcgctt ccaatcagta gaatatgtgt ttttcaatga aggagccgat
     1741 gacttttcgt ggatttccac ggaacgcgag aagcagattg ttttacgtgc cagccgcttg
     1801 atgcgggtgc ggagggtcag gttgttacgt tcaagatata gcatgtgctg gatgaagatc
     1861 ccttttctgg tcacctgttt atctttcgtg gccgacgggg tgacactgtt aaaatgtaat
     1921 gaacgcatcc cacacaatta aacacggagt agtatgatgg ttaaaagggt gaaactggca
     1981 ggtgtggagc ctcgcagctt tccggcatca tactgcccaa tacgggatgc ataaagcgtc
     2041 ctcagactgg agactccaca aatgaaatat acaccggttg gcgttgatat ggcaaaacat
     2101 gtcattcaga ttcacttcat caatgagcac atgtcagcgc cagtgatata agacggtaat
     2161 ggggatgcgg acgatttcct ggactctcag aagatgaaac atgtttactg aagaacaaaa
     2221 aatttgcgct attgagcttt atttcaaata tggtaagaag cttgaggtgt actggcaata
     2281 gcggacacca ccatttgttc tttttctaag cagtcatctg ataatatttt atcctgaagg
     2341 ctgccgggga gatattcccc agacgagagt gacgacgctg acgattgtag aaaatctcaa
     2401 tgtattcccg tattactgag atggcctcat cccggctctt aaaacgat
//
LOCUS       DAJVUN010000298         2425 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.303, whole genome shotgun sequence.
ACCESSION   DAJVUN010000298 DAJVUN010000000
VERSION     DAJVUN010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.303"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(149..1492)
                     /gene="gdhA"
                     /locus_tag="OQQ76_004036"
     CDS             complement(149..1492)
                     /gene="gdhA"
                     /locus_tag="OQQ76_004036"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HCS1970312.1"
                     /translation="MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPK
                     YRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVN
                     LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
                     DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF
                     TEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTK
                     EKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQ
                     LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG
                     WKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI"
     gene            1728..2000
                     /locus_tag="OQQ76_004037"
     CDS             1728..2000
                     /locus_tag="OQQ76_004037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnjH family protein"
                     /protein_id="HCS1970313.1"
                     /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP
                     CTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLLWRRVKP"
     gene            complement(1966..2373)
                     /gene="nudG"
                     /locus_tag="OQQ76_004038"
                     /pseudo
     CDS             complement(1966..2373)
                     /gene="nudG"
                     /locus_tag="OQQ76_004038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707356.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CTP pyrophosphohydrolase"
BASE COUNT          598 a          650 c          592 g          585 t
ORIGIN      
        1 cctggggagc atcatccgtt aaatactcat aaacgcctga aattttgccg ggggcgctgc
       61 gcttgcccgg cctacattag agcgtaactg caatgaattg tgcccatttg taggcctgat
      121 aagcgtagcg ccatcaggca tttacaactt aaatcacacc ctgcgccagc atcgcatcgg
      181 caaccttcac aaaaccggca atgttcgcgc cctgcacgta gttggtttgc tcaccttcac
      241 caccatgctc aacacaggca tggtggatat ccagcatgat gtgatgcaaa cgtgcgtcaa
      301 ctttctcggc tttccagccc aggcgcgcag cgttttgcgc catttcaagg cctgacgttg
      361 ctacaccgcc agcattagcc gctttacccg gtgcaaacag tacgcctgcc tgctggaaca
      421 gttcagtcgc ttcgatggtg gtcggcatat ttgccccttc ggcgacggct ttaacgccat
      481 tggcgataag ctgatgcgcg gcgtcaacat ccagttcgtt ctgggtggcg caaggcaggg
      541 cgatatcaac cggtacagac cacggctgtt ggccttcgag atagaccaga ccaaattctt
      601 tggcgtaatc tgccactcga ccatcgcggc tggctttgat ttcgataaga cgtgccagtt
      661 tctctttcgt gaatccgctt tcatcaacta cagtgccgct ggagtctgac gcagtgatca
      721 cacgagcacc aaattccatc gctttttcga tagcgtactg ggcgacgttg ccggagccag
      781 aaacggaaac gcgcatccct tcaaaaccca taccgtggcg ttttaacatt gcttctgtga
      841 aataaaccag accgtagccg gtagcttccg ggcgaataag actaccgcca aatgaaaggc
      901 ccttaccggt gaagacgcag gcggtattgt tggagagctt tttcatcatc cccgccataa
      961 agccgacttc acgaccacca acgccgatat cacctgccgg aacgtcggta tccgcgccca
     1021 gatgacgata aagctcggtc atcagcgcct ggcagaaacg catcacttcg ctttcgcttt
     1081 tacctttcgg gtcaaaatcg ctaccgcctt taccaccgcc catcggcagg gtagtcaggg
     1141 catttttgaa ggtttgttcg aagccgagga atttgagaat ggagaggtta actgacggat
     1201 ggaagcgcat accgcctttg tacgggccga tggctgagct gaactgcaca cgccatgcac
     1261 ggttgacctg tacctggttg cgatcatcaa cccataccac gcgaaactgg atcacgcgct
     1321 ccggttcaac cagacgctcc agtaatgaca tctggcgata ttttggattt tgttcaagaa
     1381 aaggccagag tgtggtcatt acttcacgaa cggcttgcgc gaactcggtt tgattcgggt
     1441 cgcgcttttg gacatggttg aggaatgact ccagagaata tgtctgatcc atagatataa
     1501 aacccttata tattaatacg attgtgctta tgttgtttat gtcatgtgct tttgcagttt
     1561 tcgactatac catcaagaat gtgacggtaa gcaagaaaaa aatgacccag gaaagcaaat
     1621 taataacgag agtaatctca taaccaaatg cgataactca gacgctaaag ttttgccacc
     1681 cggctaccgt tatcagttgc agagacaata acgttaagga gttccctgtg agtcgagcat
     1741 tgttcgccgt agtattagca tttccattaa ttgcactggc taacccgcat tatcgtccgg
     1801 acgtggaggt aaacgtaccg ccagaagtgt tcagttcagg cgggcagtca gcgcagccct
     1861 gtactcagtg ctgcgtttat caggatcaaa attattctga aggggcggta attaaagccg
     1921 aaggaatact gctgcaatgc cagcgggatg acaaaaccct tagcactaat ccgctgctct
     1981 ggcggcgcgt aaagccataa acgcctctaa tagtggaatg tcagtagggg ccagcggata
     2041 ttgcagcgcc tcttcaggtt agcaccagac cagcgcctga tgttcatgtg cctgtaacgt
     2101 cccgtggaag tcgggtacgt gccaggcatg aagatggata atccggcccg aaacttctcg
     2161 ctgatggctg gcaacatact cacccacagt tgcttcgatg cccaattctt cgtttaactc
     2221 acgcaccagt gcctgctgct ggctttcatc cagctcgact ttaccaccgg caaactccca
     2281 taatcccgcc tgatcgctct gggcggggcg ttgcgcgagt aaaattttgc catcacgttc
     2341 aatgatggcg gcaacaactt caatcatttt cataaattac acacgggcag ataagcgaaa
     2401 aatgccataa tatccgcact gttgc
//
LOCUS       DAJVUN010000299         2402 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.304, whole genome shotgun sequence.
ACCESSION   DAJVUN010000299 DAJVUN010000000
VERSION     DAJVUN010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.304"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..196)
                     /locus_tag="OQQ76_004039"
                     /pseudo
     CDS             complement(1..196)
                     /locus_tag="OQQ76_004039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706790.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1364 family protein"
     gene            complement(196..813)
                     /locus_tag="OQQ76_004040"
     CDS             complement(196..813)
                     /locus_tag="OQQ76_004040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HCS1970314.1"
                     /translation="MPPEKADGHIQLIKQTSSGLLLPATPESCDFLHQIKTGEWIHAD
                     FKRVRNYAFHKRFFKLLQLGFDYWTPIGGAITPRERELVSGFVEYLCESVGREHTPAL
                     SEAAEQYLNTVATRRTRDTALLKSFEAFREWVTIQAGFYTEHIYPDGSRGRRAKSISF
                     ANMDETEFQQVYKSVLNVLLNWILFRKFSSPEQVENVAAQLLEFA"
     gene            complement(833..1120)
                     /locus_tag="OQQ76_004041"
     CDS             complement(833..1120)
                     /locus_tag="OQQ76_004041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970315.1"
                     /translation="MKIEELREIFSENGLYAVRVENGAIVSHCRIRCLQSQQRKSGAV
                     LFYFCNGLLTDGFILREDEFVTSLRVLKEIGFKAGFLLLLKNKLIYNLEQD"
     gene            complement(1370..1525)
                     /gene="hokD"
                     /locus_tag="OQQ76_004042"
     CDS             complement(1370..1525)
                     /gene="hokD"
                     /locus_tag="OQQ76_004042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS1970316.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     VDYESRK"
     gene            complement(1753..>2402)
                     /locus_tag="OQQ76_004043"
     CDS             complement(1753..>2402)
                     /locus_tag="OQQ76_004043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HCS1970317.1"
                     /translation="KRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDYTIFFYN
                     PNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCF
                     DMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWDYNWRKQ
                     GGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE"
BASE COUNT          595 a          636 c          540 g          631 t
ORIGIN      
        1 atcctttctc cagatttctt gcgtgcgaaa aacaccttct gcatgcatca ggcgtaattc
       61 ttctttggtg taatcgcttg tttttacccg ccagtcggta atgcgccagc acagacgttt
      121 ccggatcgtg attgcagtag ccaggaattc tgacggtgca catctgcccc cgcgccgctt
      181 tacgtaaatc caccattacg caaactccag tagctgcgcg gccacatttt cgacttgttc
      241 cggagaggaa aatttacgga acaggatcca gttcaacagt acattcagca cagatttata
      301 aacctgctga aactcggttt cgtccatatt cgcaaacgag atggatttcg ccctgcgccc
      361 acggctaccg tccggataaa tatgctcggt gtaaaatccg gcctgaatgg ttacccactc
      421 gcggaaagcc tcaaacgact ttagcaatgc tgtatctcgg gttctgcgtg tcgcaactgt
      481 attcagatat tgctctgcgg cttcgctcag agctggcgta tgttcccggc ctactgattc
      541 gcacaggtac tcaacgaagc ctgataccag ttctcgttcg cgaggcgtaa tcgccccacc
      601 gatcggagtc cagtaatcga atcccagttg caggagtttg aaaaaacgct tgtggaatgc
      661 gtagttacgc acacgcttaa agtctgcgtg tatccactca cctgttttga tttgatgcag
      721 aaaatcgcaa ctctccggcg tcgccgggag aagtaatccg gaagaggttt gtttgatcag
      781 ttgtatatgg ccatcggctt tctccggtgg cacggtgtta cacagcagga gttcaatcct
      841 gctcaagatt gtagatgagt ttattcttca gcaaaagcag aaaaccagcc ttaaaaccaa
      901 tctctttcaa aacccgtaat gatgtgacaa attcgtcctc acgcaaaata aaaccgtccg
      961 tcagaagtcc attacaaaaa taaaataaca cagcaccgct cttcctttgt tgagattgca
     1021 aacatctaat gcggcaatgg ctgacaatcg ctccattctc aacgcgcaca gcatagaggc
     1081 cattttcact aaaaatttca cgcaattctt cgattttcat cttcagaatc cttccagata
     1141 aatagctctc ccctgttcgg ggtccatccc tcttctccct gcgcgctact taagtgagtc
     1201 gattctatct gcgaaggtgc gcgaatcaaa ttcaccggaa ataaacaaca aaaaacccgc
     1261 cgaaacgctg agagatcaca gcgatgggcg ggttaagtgc gggtgcgttg aggatgcctg
     1321 acacatcaga ggtgggcggg gatgggatca gctccccgcc cggtcactct tacttcctgg
     1381 attcgtagtc tacgaagaca gcgacctccg tctggccggt tcggattcgt acctcacaga
     1441 ggtctttcct cgttaccagt gccgtcacta tgacggttaa acagatgacg atcagggcga
     1501 ttaacatcgc cttttgctgc ttcatagcct gcttctcctt gcctttcggc atgtaagagg
     1561 ctaacctaca tgtgcaaagc atgaaattgg cctcagatta atgttaagcg tcttgccgga
     1621 cgcgtaatgt taactggggc ttttctctat ctgcctttta gtgttcatgc ctgaagcaga
     1681 tagcctcaag cacccgcagt cattctactt acctcgccaa tatgaaatca atcagaaagg
     1741 tgccccataa aatcactcct tctcttcttt accgtagtgg agttgaccaa ttttgataag
     1801 agggcgtccc tgagatttgc ggtgtagatt ggtatcgcgc agagaataca cacagccaca
     1861 atattcctgc tgatagaatt tttcgcgctt gctgatttca atcatacggg acgagcctcc
     1921 ctgcttgcgc cagttataat cccagtacac catgcccgga taatgcgcga cggctcgccg
     1981 cccacagtcg ttaacctgct gcatattttt ccagcgtgaa atgcccagtg aactgctgat
     2041 cacactgaaa ccattttcag cggcgtacag cgctgtccgc tcaaaacgca tgtcaaaaca
     2101 catggtgcaa cggatccctc gttcgggctc ccattccatt cctttggctc gttcaaacca
     2161 gttgtctgtg tcgtaatcag catcaataaa cggcacgccg tgttgttcag caaagcgaat
     2221 attctcatcc ttacgaatta aatactcttt ctgaggatga atgttcgggt tgtagaaaaa
     2281 gatggtgtag tcgattcccg aggcctgaag cgcctccatc acctcaccgg aacatggagc
     2341 acagcaagag tgcagtagta gtttgtttgc cccgtttggg agctccaatt tgggccgttt
     2401 ga
//
LOCUS       DAJVUN010000300         2398 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.305, whole genome shotgun sequence.
ACCESSION   DAJVUN010000300 DAJVUN010000000
VERSION     DAJVUN010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.305"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..753)
                     /locus_tag="OQQ76_004044"
     CDS             complement(<1..753)
                     /locus_tag="OQQ76_004044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS1970318.1"
                     /translation="MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRN
                     LPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERE
                     LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR
                     TKNLALLPHAHQQQNPPQEETVVSIAVDPESPA"
     gene            complement(755..1033)
                     /locus_tag="OQQ76_004045"
     CDS             complement(755..1033)
                     /locus_tag="OQQ76_004045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970319.1"
                     /translation="MAHDTKFYNSDNSAAPASRHGRRSHAFKSDWYQHDPCTEEQAEW
                     LIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR"
     gene            974..1159
                     /locus_tag="OQQ76_004046"
     CDS             974..1159
                     /locus_tag="OQQ76_004046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970320.1"
                     /translation="MPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQ
                     KKQNPPKRVKCGCVEDA"
     gene            complement(1201..1356)
                     /gene="hokD"
                     /locus_tag="OQQ76_004047"
     CDS             complement(1201..1356)
                     /gene="hokD"
                     /locus_tag="OQQ76_004047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokD"
                     /protein_id="HCS1970321.1"
                     /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF
                     TAYKPEE"
     gene            complement(2008..2342)
                     /locus_tag="OQQ76_004048"
                     /pseudo
     CDS             complement(2008..2342)
                     /locus_tag="OQQ76_004048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001509831.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          572 a          626 c          567 g          633 t
ORIGIN      
        1 agccggagat tccggatcaa cggcaatgct gaccaccgtc tcttcctgtg gtggattctg
       61 ttgctggtgg gcgtgaggca gcagcgcaag attttttgtg cgctgcttca gtatgctggt
      121 ggcggtctgc tctcccggca cgatgtcgct ttcacggtac attgagcgga ttttttccgc
      181 acgcaacccc agcgaacgac gtaataccgc ttccggtagc gcgtccgcca cctgattgcg
      241 gaccgcccac caggataatt cagccagaga taattcacgc tcctgcgtac cgcttattgc
      301 gtgaccgatg acgtcaatca tccatgctga caggttttga tgagcaagtt gctcgagtga
      361 ttcggatgtc tggtcacgca actggttgtc gcagtgccag cacaacacca ttgcgccggt
      421 accataacgg tgaatgacgg tttcgctgtg atgataatcg ccgtgtggcc actggcagga
      481 tttaatatgg cgcaacagcc agtcagacaa tgcaccagca ccaccagcag cacgaatcac
      541 ccgtgcgtta ctgaaaaacg gcagcaatgt tttgtcttcc actagcggct ggcgaacggc
      601 aggaacgacc ccggacggca gattacgcat gcttttcggt tccggctcca ccagtacccg
      661 ggtattgtgg aataccggca tggattcacg gcctggctta aggaccacca gcccgagttc
      721 cggaaccaga acaggtcgaa gtaatacccg cacattacct ccagatccgt tgctggaatg
      781 tgcaggacgg acgcggtggc cgttcggaat aagggagcct gacgaagatt atccagtgac
      841 gataatcgag actgagggct ttcttaatct cgtatccgtg tctgcggtag cgctgaatca
      901 gccattcagc ctgttcttcg gtgcaggggt cgtgctgata ccagtcagat ttgaatgcat
      961 gagaacgccg cccgtgcctg ctggcagggg cggcagagtt atccgaattg taaaatttgg
     1021 tatcgtgcgc catctgtttt ctctgctggc gcagcaggtg ccagttgttc aggctgacgg
     1081 atggattgta aaccagaacg accagaaaaa acaaaacccg ccgaagcggg ttaagtgcgg
     1141 gtgcgttgag gatgcctgac acatcagcgg tggcgaggga tttctccccc gccgggtctc
     1201 ttactcctca ggtttgtaag ctgtgaagac agcgacctcc gtctggccgg ttcggattcg
     1261 tacctcgcag aggtctttcc tcgttaccag tgccgtcact atgacggtta aacagatgac
     1321 gataagggcg attaacatcg ccttttgctg cttcatagcc tgcttctcct tgcctttcgg
     1381 cacgtaagag gctaacctac atgtgttcag catggattga gcctcagatt aatgttaagc
     1441 gtcttgcagg acgcgtaatg ttaactgggg cttttctcta tctgcctttt ggtgttcatg
     1501 cctgagacag atagcctcaa gcacccgcag tcattctact taactaagat ttccctgcaa
     1561 accgtttttg tccggcacag taaatatcca actaaaccaa tagcgttcgc tgtatttacc
     1621 gccagtattc aatgcacatg accgccatga acacccctaa aaaaagggca tttatatgtc
     1681 caaacattaa tatcaaaaca tcaatttttt ccatatacct tgctgtgaag atgatgggca
     1741 tacatgatgc gaacaaccag aacgcaacaa acaaaaactg caatgcgttt ttcattattc
     1801 cccctacaat caatgtgcaa taacatttaa acacacctca atttggccgg acatataaat
     1861 atctaaacca gaaaaaatca cttacatagc gttacaaact ctttagtcta aatactcatc
     1921 gtaaaacatt ccccatactt atcagtccgt tccgcgccag gtagcttatt gccttatctg
     1981 gcaacctata atcaggtttc cgctttttca gttggctggt cgtttaaccg acatagttaa
     2041 cccattaatc tggttgccgg atgctggtgg attttcgcgt tttagttgtt cataaaagtg
     2101 cacagcttta accagttctt ttgatgtaac cgggactggt ggggcagtga ataaggcctg
     2161 aatttcatag ttcggcctgt cgttacaatc ctcttttttc ggtacatatt tccagtcacc
     2221 aacccacaac tccccctgag agtccataac accttttttc acgtagcgat atcgccacgc
     2281 tatcggctct gcttccagcg atgccgtgca attttgaata actcgccctc tactcgcgcc
     2341 atccctgaat tggggtggca tttcgtaatc gctattttta atttggcttc ttcgatta
//
LOCUS       DAJVUN010000301         2391 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.306, whole genome shotgun sequence.
ACCESSION   DAJVUN010000301 DAJVUN010000000
VERSION     DAJVUN010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.306"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(118..2337)
                     /locus_tag="OQQ76_004049"
     CDS             complement(118..2337)
                     /locus_tag="OQQ76_004049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HCS1970322.1"
                     /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDS
                     CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG
                     VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG
                     GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR
                     DVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA
                     VTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY
                     VWINPPAIPLSTEEMDSVFALPYKRVPHPAYGNARIPAYEMIRFSVNIMRGCFGGCSF
                     CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE
                     QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI
                     KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY
                     FISAHPGTRDEYMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLAKIGYK
                     SEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIE
                     EMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR"
BASE COUNT          561 a          646 c          631 g          553 t
ORIGIN      
        1 atacactaaa tcagtaagtt ggcagcatta cccatttcgg catataaata aatgcctaat
       61 gagatagatt ctgatgtaat atccccggta gcaattctgc taccgggaac agcgaattta
      121 acgtccaacc gccgctttag gccgtttctt cgcaccagca ttcaccggac gagattgcgt
      181 agacgacgct ttttttgccg tagcaggcgt ctgacgctgg gtcgccatcg gcgtatgttt
      241 cgtcaacgcc ggacgggtat tgcggttctg gcgacgagct tcacgcatct cttcaatggt
      301 tggcgcaggc actaagcaat cgcgacggct accaatcaga tgctttttac ccatcgcttc
      361 cagcgcctgg cggattaacg gccagtttgc cggatcgtgg taacgcaaca acgctttatg
      421 caaacgacgc tgcttgtcgc ccttcggtac gaagacgtct tcactcttat aaccaatctt
      481 cgccagcggg tttttcccgg tgtaatacat ggtggttgag ttcgccagcg gcgatgggta
      541 gaagttctgt acctggtcga gacggaaacg atgctttttc agccacagcg ccagattcac
      601 catatattca tcacgcgtac cggggtgcgc ggagatgaaa taggggatca gatactgctc
      661 tttacctgcc tgttttgagt aagtatcgaa cagctcttta aagcggtcat agctgcccat
      721 gcccggcttc atcatcttcg ataacggccc ttcttcggta tgttccgggg caatcttcag
      781 ataaccgccg acgtgatggg tcgccagttc tttgatatag cgcggatctt ccacggcgat
      841 gtcataacgc acaccagagg caatcaggat ctttttaatg cctttcagat cacgcgcacg
      901 gcgatagagg ttgatcgttg gttcgtggtt cgtgtccatg tgcggacaaa tatccggata
      961 aacgcacgac aaacggcggc aggtttgctc agcgcgtggc gatttgcagc gcaacatata
     1021 catgttggca gttggcccac cgagatcgga aattacgccc gtaaaacctg gaacggtgtc
     1081 gcggatcgct tcgatctcat taatgatcga atcttcggaa cggctctgaa taatgcgccc
     1141 ttcgtgctcg gtgatagaac agaaagagca gccgccaaag cagccacgca taatgttgac
     1201 cgaaaaacgg atcatttcgt aagccggaat acgggcattg ccataggccg gatgtggcac
     1261 gcgcttgtat ggcagcgcaa aaacgctgtc catctcttcg gtagaaagcg gaatagcagg
     1321 cgggttgatc cacacatagc ggtcgccgtg tttttgcatc aatgcgcggg cacagcctgg
     1381 gttggtttcg tggtgcagaa tacgcgaagc atgggcgtac agcactttat cgcccttcac
     1441 tttctcgaaa gaaggcagca acacgtaggt tttttcccac ggtttcgggc gcggtggctg
     1501 cacggttacg gctttggctt cctgcttttt cggtgccacc ggtttgttat ccgcgcacgg
     1561 caaatcttca ccatacggat gcgggattgg gtcgattttt ccaggggtat caagacgggt
     1621 ggaatccacg ccgctccagc caggcagggc ctctttcacg ataatcgcgg tattacgcac
     1681 atcgcggatt tcactaatcg gctcgcccat cgccagacgg tgcgccacct ccaccagcgg
     1741 acgctcaccg ttaccaaaca tcagcatgtc ggctttcgaa tccaccagca cggaacggcg
     1801 cacggtatcg gaccagtaat cataatgtgc ggtacgacgc agactagcct caataccgcc
     1861 gaggatcacc ggtacatctt tccacgcctc tttacaacgc tgggtataaa ccagtgtggc
     1921 gcgatccggg cgcttacccg cgacgttatc cggcgtgtag gcatcgtcat gacgtaaacg
     1981 gcgatcggcg gtataacggt tgatcatcga atccatgttg ccagcagtaa caccgaaaaa
     2041 cagattcggt ttacccagac gcataaagtc gtctttgctg ctccagtccg gctgggcgat
     2101 gatcccgacg cgaaagccct gcgcttccag catacgaccg caaatcgcca tcccgaagct
     2161 tgggtgatcg acatacgcgt cgccagtaac caaaatgatg tcgcagctat cccagccaag
     2221 ttgatccatc tcttcacgag acatcggcaa aaacggtgcc ggtccaaaac aggcggccca
     2281 gtactgcggc caggagaaca ggtcgcgatc cggttggatc agggagatag agctcatttt
     2341 gcttccagaa atgataaaaa aataatcaaa ggccggggat tataagccgg a
//
LOCUS       DAJVUN010000302         2372 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.307, whole genome shotgun sequence.
ACCESSION   DAJVUN010000302 DAJVUN010000000
VERSION     DAJVUN010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.307"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            131..406
                     /gene="frmR"
                     /locus_tag="OQQ76_004050"
     CDS             131..406
                     /gene="frmR"
                     /locus_tag="OQQ76_004050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formaldehyde-responsive transcriptional
                     repressor FrmR"
                     /protein_id="HCS1970323.1"
                     /translation="MPSTPEEKKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAA
                     VRGAANGLMAEVLESHIRETFDRNDCYSREVSQSVDDTIELVRAYLK"
     gene            441..1550
                     /gene="frmA"
                     /locus_tag="OQQ76_004051"
     CDS             441..1550
                     /gene="frmA"
                     /locus_tag="OQQ76_004051"
                     /EC_number="1.1.1.284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase"
                     /protein_id="HCS1970324.1"
                     /translation="MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDA
                     FTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGK
                     TNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEAN
                     HEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID
                     TNPKKFDLARRFGATDCINPNDYGKPIKDVLLDINKWGIDHTFECIGNVNVMRAALES
                     AHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGD
                     IDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIRY"
     gene            1643..>2372
                     /gene="fghA"
                     /locus_tag="OQQ76_004052"
     CDS             1643..>2372
                     /gene="fghA"
                     /locus_tag="OQQ76_004052"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HCS1970325.1"
                     /translation="MELIEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAASEKLP
                     VLYWLSGLTCNEQNFITKSGMQRYAAEHNIIIVAPDTSPRGSHVADADRYDLGQGAGF
                     YLNATQAPWNEHYKMYDYIRNELPDLVMHHFPATAKKSISGHSMGGLGALVLALRNPD
                     EYVSVSAFSPIVSPSQVPWGQQAFAAYLGENKDAWLDYDPVSLISQGQRVAEIMVDQG
                     LSDDFYAEQLRTPNLEKICQEMNIK"
BASE COUNT          570 a          571 c          654 g          577 t
ORIGIN      
        1 ttcctctttg ttttccgacc acattcaccg gataaatttt attctccagt gttatatact
       61 ataggggggt atgcattgac atatagcata cccccctata gtatattgcg tgcagataat
      121 gaggtgcgaa atgcccagta ctccggaaga gaagaaaaag gtccttactc gagttcgtcg
      181 tattcgaggg cagattgatg ctctggaacg gtcgctggag ggtgatgccg aatgccgtgc
      241 catactccaa cagatcgctg ccgttcgggg cgcggctaat gggctgatgg cagaagtgct
      301 tgaaagccat atcagggaaa cgtttgaccg aaatgactgc tacagccgcg aagtcagcca
      361 atccgttgac gacactattg aactggttcg agcctatctt aaatagctga atctattacc
      421 atattgagga agagcgagag atgaaatcac gtgctgccgt tgcatttgct cccggtaaac
      481 cgctggaaat cgttgaaatt gacgttgcac caccgaaaaa aggtgaagtg ctgattaaag
      541 tcacccatac cggcgtttgc cataccgacg catttaccct ctccggggat gacccggaag
      601 gtgtattccc ggtggttctc ggtcacgaag gggccggcgt tgtggttgaa gtcggtgaag
      661 gcgtaaccag cgtcaaacct ggcgaccatg tgatcccgct ttacaccgcg gagtgcggcg
      721 agtgtgagtt ctgtcgttct ggcaaaacta acctctgtgt tgcggttcgc gaaacccagg
      781 gtaaaggctt gatgccagac ggcaccaccc gtttttctta caacgggcag ccgctttatc
      841 actacatggg gtgctctaca ttcagtgaat acaccgtggt cgcggaagtg tctctggcca
      901 aaattaatcc agaagcaaac catgaacacg tctgcctgct gggctgtggc gtgaccaccg
      961 gtattggcgc ggtgcacaac acagctaaag tccagccagg tgattctgtt gccgtgtttg
     1021 gtcttggcgc gattggtctg gcagtggttc agggcgcgcg tcaggcgaaa gcgggacgga
     1081 ttatcgctat tgatacgaac ccgaagaaat tcgatctggc gcgtcgcttc ggtgctaccg
     1141 actgcattaa cccgaatgac tacggcaaac cgattaaaga tgtcctgctg gatatcaaca
     1201 aatggggtat cgaccatacc tttgaatgca tcggtaacgt caacgtgatg cgtgcggcgc
     1261 tggaaagtgc gcaccgcggc tggggtcagt cggtgatcat cggggtcgcg ggttctggtc
     1321 aggaaatctc cacccgtcca ttccagttgg tcactggtcg cgtatggaaa ggttccgcgt
     1381 ttggcggcgt gaaaggtcgt tcccagttac cgggcatggt tgaagatgcg atgaaaggtg
     1441 atatcgatct ggaaccgttt gtcacgcata ccatgagcct tgatgaaatt aatgacgcct
     1501 tcgacctgat gcatgaaggc aaatccattc gaaccgtaat tcgttactga tttcccgcag
     1561 gtataccccg tccacttcag acggggttct taatactctc cccgggcagc cgtccggggg
     1621 attaaccgtg agataatgac tgatggaact cattgaaaaa catgccagct ttggcggctg
     1681 gcaaaatgtg tatcggcatt attcccaatc attgaaatgt gaaatgaatg tcggcgtcta
     1741 tctcccgcca aaagccgcaa gtgaaaaatt accggtgctg tactggcttt cgggcctgac
     1801 ctgcaatgag cagaatttca ttactaaatc ggggatgcag cgttacgcgg ctgagcacaa
     1861 cattattatt gttgcgccgg acaccagtcc gcgaggcagt catgtcgcag atgccgaccg
     1921 ttacgatctc gggcaaggtg ccgggtttta cctgaacgcg acgcaagcgc cgtggaatga
     1981 acattacaaa atgtatgact atatccgcaa cgagctgccg gatttagtga tgcatcattt
     2041 tccggcaacg gccaaaaagt ctatctctgg tcattctatg ggcgggctgg gcgcgctggt
     2101 gctggcgtta cgtaacccag atgaatatgt cagcgtctcg gcgttttcgc ccattgtctc
     2161 cccatcgcaa gtaccgtggg gacagcaagc ctttgccgca tatcttggtg aaaataaaga
     2221 tgcctggttg gattacgatc cggtgagtct tatttcacaa ggtcaacgcg ttgcggaaat
     2281 catggttgat caggggttga gtgatgattt ttacgcggaa cagctgcgga ctccaaatct
     2341 tgaaaagatc tgccaggaga tgaatatcaa ga
//
LOCUS       DAJVUN010000303         2337 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.308, whole genome shotgun sequence.
ACCESSION   DAJVUN010000303 DAJVUN010000000
VERSION     DAJVUN010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.308"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..1560)
                     /locus_tag="OQQ76_004053"
                     /pseudo
     CDS             complement(1..1560)
                     /locus_tag="OQQ76_004053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309141.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
     gene            complement(1541..1954)
                     /locus_tag="OQQ76_004054"
     CDS             complement(1541..1954)
                     /locus_tag="OQQ76_004054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
                     /protein_id="HCS1970326.1"
                     /translation="MGRLDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTY
                     AVLSLFFCDPDMHPSDFSLLVPRHEEEQVERPDEDKMLMQKAAGLAGGVRFGGDGGRD
                     ILSSADVADVMVDDAALMMASAGIPGGVRYVPAGW"
     gene            complement(1981..>2337)
                     /locus_tag="OQQ76_004055"
     CDS             complement(1981..>2337)
                     /locus_tag="OQQ76_004055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
                     /protein_id="HCS1970327.1"
                     /translation="IEHLALLKRRAEQAESCGNLQVSVEDLVRTGAFLVAMSLWHNHP
                     QKTQSPSMNEAVMKIEQEVLTTWPADAIARAEDVVLCLSGMIEAVRPDTDITEVAKNN
                     TLTDDDFSAGKSSTAS"
BASE COUNT          472 a          761 c          572 g          532 t
ORIGIN      
        1 ggcggcctct ttcaggacca catactgatt ttccgcttcc cataaatccc ggcgctgctg
       61 gctgattttc tcattcacac cgctgtgttt ttccagcgtc ctgagctcgg tttcaagcgc
      121 cagcatggct gcatgcgccc ggtcttcctg gcgctcaccg gcagacacct tcacaccgga
      181 cggctttttc agcgtctatt cataatcctt ttttgccgac gccatcagcg tgttgcaatc
      241 cgcctgcagg atttttccgt ctttcagggc cttattcagc tctttctgac gggcggtata
      301 tttatccagc ggcgtctgca ggcgctcata cgccttctgc gcctctccgg tatacttcag
      361 ctgtgacgcc tcacgctcag cccggtccct tgccgccagt tcaccggctt tttccatatc
      421 cgactgcagc gtggccgctg ccagacccag acgggcattt tcccggtcat cccatgcccc
      481 ctgaaggttc gcacgaaaag aggagatctt tccccggcgc tggctccggc tctggtacca
      541 ctgccatttt ttatccgcct catcaaatgc cttctgcgca ctggcgagca tatccgctga
      601 ggattcagga cgaccgatat ccagaatggc atcccacatc gatttgaatg ccttccctgt
      661 tttatccgcc caggtctcca gtgttcccat gttttctttc aggcgacggg tctgctcatc
      721 aaagcctttc gtggcgatat cgttcgccgc ctgcaatgcc ccggcctcgt ctccggaacg
      781 ctgcagctgt gcaacatacg caatctgctc tgccgtcacg ttacggaact ggcgcgccat
      841 cgccatcagt cccgacgtcg ggtcagtggt cagcttcccg aaggcttcag cgactttatc
      901 cacctccaca ccggatgcag acgcaaaacg cgcgacactc tggttgatgg catcaaactg
      961 ttcaccacca cgcacaccgg cattcaccag ggctgccagt gactctttcg cctggttaaa
     1021 cgtcagccct gctgcctgcc cggctcttga gagagtcagc atacgatcgg cagtcagtcc
     1081 ggactgatta ccggaaagaa ccagggtttt attaaacgct gaaagcgtgg aatctccctg
     1141 gtaccaggcg tacaccagcg cacctgtcgc caccgccagc gaggtgaccc cgaccatcgg
     1201 cagggtgatc gcaccggcaa gccccctgaa catggggatc atcccgccga aggagtcctt
     1261 cacctgaccg ccctgttgca gcaggatcag ccagggattc tgaccacctg caagctgcgt
     1321 ggcgatatcc gtaaactgtg cgggcagggt tcgcatggcc gctttatact gcccgacgga
     1381 aatcccggct ttttgtgcag ccagcgcctg gcggctcagg ccctgttcaa cagcactggc
     1441 ggtttttctg gcgtcggtat ccagacctga aaaatgacgc cttacccggc tcatctgctc
     1501 atcgaaacgg acagcatcca gactcaggtc aataacaaga tcaccaaccg gctgggacat
     1561 atctcacacc tcccggaatc cccgctgaag ccatcattaa tgcggcatca tccaccatga
     1621 catccgccac atccgcagac gataaaatat cgcgccctcc gtccccaccg aaccggacgc
     1681 ctccggcaag tcctgccgct ttctgcatca gcattttgtc ctcatccggc ctctccacct
     1741 gctcttcctc atgccggggg acaagcagac tgaaatcaga gggatgcata tccggatcgc
     1801 aaaaaaacag gctgagtaca gcgtacgtca gcccggaaaa atgcatatcc agctgggtat
     1861 cctgaaaata atgcgtgcgg taaaaacggt gccagtcggc atattcggtg gatgtcatcc
     1921 cggcaagcat ggcgcgccag tcgagtctcc ccatctcacg cgccagtctg agggcaaagt
     1981 tcagctcgcc gtcgaagact ttcccgcaga aaaatcatca tcagtcagcg tgttattttt
     2041 cgccacttca gtaatatcag tatccggacg aacagcttcg atcatcccgg acaggcacaa
     2101 caccacgtct tccgcccggg caatggcatc ggcaggccag gtggtgagca cttcctgctc
     2161 tatcttcatc acggcctcat tcattgacgg tgactgcgtt ttctgtggat ggttatgcca
     2221 cagggacatc gccaccagaa acgcgccggt tctgacgaga tcttccacgc ttacctgcag
     2281 gttgccgcag gattctgcct gttctgcacg ccgtttcagg agggcaagat gctcgat
//
LOCUS       DAJVUN010000304         2319 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.309, whole genome shotgun sequence.
ACCESSION   DAJVUN010000304 DAJVUN010000000
VERSION     DAJVUN010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.309"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..98)
                     /locus_tag="OQQ76_004056"
     CDS             complement(<1..98)
                     /locus_tag="OQQ76_004056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS1970328.1"
                     /translation="MVTKTITEQRAEVRIFAGNDPAHTATGSSGISS"
     gene            complement(135..1640)
                     /locus_tag="OQQ76_004057"
     CDS             complement(135..1640)
                     /locus_tag="OQQ76_004057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HCS1970329.1"
                     /translation="MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQ
                     QQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTG
                     YDGIVTCLQQAMADSQVRGILLDIDSPGGQAAGVFDCADMIYRLRQQKPVWALCNDTA
                     CSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGN
                     QFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVDAVTGTEAAVFEGQSGIEAGLA
                     DELINASDAISVMATALNSNVRGGTMPQLTATEAAVQENQRVMGILTCQEAKGREQLA
                     TMLAGQQGMSVEQARAILAAAAPQQPVASAQSEADRIMACEEANGREQLAATLAAMPE
                     MTVEKARPILTAAPLADAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLA
                     AGSGKAEPVSASTTALFEHFMANHSPAAVRGGVSQTSADGDADVKMLMAMP"
     gene            complement(1630..>2319)
                     /locus_tag="OQQ76_004058"
     CDS             complement(1630..>2319)
                     /locus_tag="OQQ76_004058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000831749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HCS1970330.1"
                     /translation="NPLINILDKFSTWYDTNSVMLGGVKIPHLFPGDDLKLQTAQDSD
                     NGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRYFMGRRKFIASR
                     LATQMFSCWLEEALLRGIIRPPRARFDFYQARSAWSRAEWIGAGRMAIDGLKEVQESV
                     MRIEAGLSTYEKELALMGEDYQDIFCQQVRESAEREKAGLSRPVWIAQAYQQQIAESR
                     RPEEETTPRET"
BASE COUNT          473 a          761 c          587 g          498 t
ORIGIN      
        1 gaggaaatcc cgctgctgcc tgtggcggtg tgagccggat cattaccggc aaaaatacgt
       61 acttccgcac gctgttcagt gatggttttc gtcaccattt tgttaaaacc tcatattgat
      121 ggtcagcact gacttcatgg catggccatg agcattttca cgtccgcatc accgtctgct
      181 gacgtctgtg acacgccacc ccgcaccgct gccggtgaat gattcgccat gaaatgttca
      241 aacagggcgg ttgtggatgc agagaccggt tcggccttac ctgatcccgc agccagcacc
      301 gcccgggcgt tctccacggt cattcccggg caggccgcca gtttttcagc ctgcgcttct
      361 gccccttttg cctcatccag ggccatgatc tgatcacgaa gtgagggccc ggcatccgcc
      421 agtggtgcag ccgtcaggat cgggcgggct ttttccaccg tcatctccgg catcgccgcc
      481 agcgttgccg ccagttgttc acgaccgttc gcttcttcac acgccataat gcgatcggct
      541 tcactctgcg cggatgccac cggctgctgc ggtgccgccg cggccagaat cgcccgggcc
      601 tgttcaacgc tcatgccctg ttgccctgcc agcatcgtgg caagctgttc acgtcctttc
      661 gcttcctggc atgtcaggat ccccatcact cgctggttct cctgcacggc ggcttccgtt
      721 gcagttaatt gcggcatagt gcctcctctg acattactgt tcagcgccgt ggccatcaca
      781 ctgatggcat ccgacgcatt gattaattca tccgccagcc cggcctcaat gccggactga
      841 ccttcaaaaa cagcggcctc tgttcccgtg actgcatcaa cagacagacc ggtaaacatc
      901 gccacttttt cggcaaacat ccggcgcgcc gcatcaatcc gctgctgcat gtcctggcga
      961 acctctgccg gcaacgcttc aaactgattg ccatccacct tgtgcgcccc tgagtaaatc
     1021 agcgtgatat ccacaccggc ctgcgccaga tgaccggcat agctgacatg gctcatcatc
     1081 acgccaatgg aaccgatacg ggatgtctgg gtaaccagcc gtcgggagca ggccgacgcc
     1141 agcagcatgg ccgcagaaca ggccgtgtca ttacacagtg cccagaccgg cttctgctgc
     1201 cggaggcggt aaatcatgtc agcgcagtca aacacgccgg cggcctgccc gcccggactg
     1261 tcaatgtcca gcagtatgcc ccgcacctgg ctatctgcca ttgcctgctg aagacaggtg
     1321 acaatgccgt catagccagt cattccggaa aatggccgca tcccccccag ccggtgcacc
     1381 agcgtgccgg tcaccggcag taccgcaata ccgttcacca cccggtaaac acgggccggt
     1441 cgtttacctc cggccatgta ctcgtccgtt tcagccagca tcccgggagc atcaagctgt
     1501 acctgctgtt gcggtaccga aagacttgct gcccccatct cgcgccccag cgcgcaaaag
     1561 aaaacccgcg cataggcggg ctccagaagc agcggttcat tgaatgctgc tgcaataatg
     1621 tgtgaaagat tacgtctcac gtggtgttgt ctcctcttcc ggcctgcgac tctccgctat
     1681 ctgctgctga tacgcctgcg ctatccacac cggacgtgag agtccggctt tttcccgctc
     1741 tgcagattcc ctgacctgct ggcagaaaat gtcctgataa tcctcgccca tcagcgccag
     1801 ctctttctca tacgtgctca gtccggcctc aatgcgcatc actgattcct gaacctcctt
     1861 gagcccgtca atggccattc ttccggctcc aatccactca gcccgtgacc aggctgatcg
     1921 cgcctgataa aaatcaaacc gtgcccgtgg cggacgaata atcccccgaa gaagtgcctc
     1981 ttccagccag caggaaaaca tctgcgtggc cagccgggac gcaataaatt ttcgccgccc
     2041 cataaaatag cgccacgact cattggcgga tgcgcgggca cttgagtaac tgaccttcga
     2101 gtaatcacgg gacaactgtt cgtaggaaac gccaagaccg gcggcgatat accgcagcag
     2161 cgcctgttca agcgccgaaa atccattgtc tgaatcctgc gcggtctgaa gtttcagatc
     2221 atcaccgggg aaaaggtgcg gaattttgac accgcccagc atcacgctat tcgtgtcata
     2281 ccaggtggag aacttatcca gaatattaat aagcggatt
//
LOCUS       DAJVUN010000305         2278 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.310, whole genome shotgun sequence.
ACCESSION   DAJVUN010000305 DAJVUN010000000
VERSION     DAJVUN010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2278
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.310"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..349)
                     /locus_tag="OQQ76_004059"
     CDS             complement(<1..349)
                     /locus_tag="OQQ76_004059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing protein"
                     /protein_id="HCS1970331.1"
                     /translation="MKIKSISKAVLLFALLTSTSFAAGKNVNVEFRKGHSSAQYSGEI
                     KGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDRHGQYSLP
                     ASGKYELRVLQTRN"
     gene            591..884
                     /locus_tag="OQQ76_004060"
     CDS             591..884
                     /locus_tag="OQQ76_004060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HCS1970332.1"
                     /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMIL
                     PLDGRKKLVNADIEKVKLALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK"
     gene            956..1615
                     /locus_tag="OQQ76_004061"
     CDS             956..1615
                     /locus_tag="OQQ76_004061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HCS1970333.1"
                     /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF
                     IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL
                     TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLGLSVNGEQRQQG
                     TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV
                     L"
     gene            1707..2153
                     /locus_tag="OQQ76_004062"
     CDS             1707..2153
                     /locus_tag="OQQ76_004062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309703.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HCS1970334.1"
                     /translation="MNDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDEDTDEIY
                     FTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLAEGKDL
                     PVWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ"
BASE COUNT          593 a          489 c          589 g          607 t
ORIGIN      
        1 cgtttcgggt ttgcagcact cgcagctcat atttgccaga agcagggagt gagtattgtc
       61 cgtgacgatc gagttctggg gaatatctgg ataaatcaac agaatcatcg attcctggcc
      121 cgaagaggta agtatcagcg ccttcattag agatactcac atgtactttc tgaccttttt
      181 tggcatagaa ggtatatgta tcgtaatcgt atccctttat ttcgccggag tactgagcgc
      241 tgctatggcc ttttctgaac tcaacattga cattcttacc cgcagcaaag ctcgtggagg
      301 ttagcagtgc aaacagtaat acagccttac tgatgctctt gattttcatt ggtagtctcc
      361 tgttcagaat gagtacgatg aactgttata atataacaat ccctaacggg agaattccag
      421 tggcttttct gcgttcggta aaatcccggc gcggcatttt ttgccggggg gattacttat
      481 aaaggggcat ggactcaaca aaccgcagaa atctacagct ggctggcttg tggcgcgggt
      541 ttcattgatg ttagcttatg ccaaaacctg gcatcttaaa gagtaaaagt atgttttgtg
      601 tgatttatcg aagcagcaag cgtgaccaga cctatttata tgtcgaaaaa aaagacgatt
      661 tttcgcgtgt tcctgaggaa ctgatgaaag gttttggtca gcctcagtta gcgatgattc
      721 tgccgttgga tgggcggaag aaactggtca atgctgatat tgaaaaggtt aaactggcat
      781 taaccgagca aggttactat ttgcagttac cgccaccacc cgaagatttg ctgaagcaac
      841 atctttccgt catggggcag aaaacagacg acacgaacaa ataaccgata tccggcggtg
      901 gcattatctt tgtcggcgcg ggttttcata tccacgataa ggtgagggga acgttatgta
      961 tcaacatcac aactggcaag gtgcgctgct ggattatccg gtgagtaaag tagtctgtgt
     1021 tggcagtaac tatgccaaac atattaaaga gatgggcagc gcagtgcccg aagagccagt
     1081 gctgtttatt aaaccagaaa cggcactgtg cgatctgcgg cagccattgg cgatcccatc
     1141 cgatttcggt tcagttcatc atgaagtcga actggcggtg ttgattggtg cgacgctgcg
     1201 tcaggcaacg gaagagcatg tccgcaaagc cattgccggt tacggcgtgg cgcttgatct
     1261 gacattgcgt gatgttcagg gaaaaatgaa gaaagccggg cagccgtggg aaaaggctaa
     1321 agcgtttgat aactcttgtc cgctttccgg gtttatcccc gcggcggaat ttaccggcga
     1381 tccacaaaat acaacgctgg gcctgagcgt aaatggcgaa caacgccagc aaggtacgac
     1441 tgcggacatg atccataaaa tcgttccgtt gatcgcttat atgagcaagt tttttaccct
     1501 caaggccggt gacgttgtgt tgacaggcac gcctgatggc gtcggcccgt tgcaaagcgg
     1561 tgatgagctg acagtcactt tcgatgggca ttctttgaca actcgcgttt tgtaatactt
     1621 tttgccgcct gaaagcggcg gcaaaacttg catcgctgtg ccagactggt tataaggtgc
     1681 gttttaacgt aatggcggaa cacctgatga acgatgtacc tttctggcaa agtaaaaccc
     1741 tggacgaaat gagcgatgcg gaatgggagt cgttgtgtga tggttgcggt cagtgttgcc
     1801 tgcataaact gatggatgaa gacaccgacg aaatctactt cactaacgtc gcctgtcgcc
     1861 agctcaatat taaaacctgt caatgtcgga actacgaacg tcgtttcgag tttgaacccg
     1921 actgcattaa attaacccgt gaaaatctgc caacattcga atggctgcca atgacctgcg
     1981 cttatcgttt gctggcggaa ggtaaagatt tacctgtgtg gcatccgcta cttactggtt
     2041 cgaaagcggc aatgcatggt gaacgtatct ctgtgcgtca tatcgcagtg aaagaatcag
     2101 aagtgattga ctggcaggat catatcttaa ataaacctga ctgggcgcag tgataaattt
     2161 aatagatgtt gatgggggct ttcttaatat acgtctggat gctcgccatt tcgtagccct
     2221 gtttttgaaa gcgctctgtc ataatgagag ttacccgata ccttattatc aacaggta
//
LOCUS       DAJVUN010000306         2271 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.311, whole genome shotgun sequence.
ACCESSION   DAJVUN010000306 DAJVUN010000000
VERSION     DAJVUN010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.311"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            324..1976
                     /locus_tag="OQQ76_004063"
     CDS             324..1976
                     /locus_tag="OQQ76_004063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858318.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HCS1970335.1"
                     /translation="MIPLKKNITLIMFTLSLLTGNPAIAYETDKVYKITVLHTNDHHG
                     HFWRNNHGEYGLSSQKTLVDNIRQKVINNGGSVLLLSGGDINTGVPESDLQKAEPDIR
                     GMNLIGYDAMAVGNHEFDNPLNILRQQEKWATFPFLSANIYQKSTGRRLFSPWKIFIR
                     QNLKIAVIGLTTDDTAKTGNSEYFTDIEFRQPAAEARSVIDELNQQEKPDIIIAATHM
                     GHYDNGESGSNAPGDVEMARSLPTGSLAMIVGGHSQAPVCMASDNKKQWNYIPGTTCV
                     PDKQNGIWIVQAHEWGKYVGQADFEFCNGTMKLVNYQLHPVNLKMRITREDGKTEFSF
                     YTPEITEDPQMLSLLTPFQNKGKAQLDVKVGVVNGRLEGDRSKVRFVQTSMGHLILSA
                     LTERIDADFAVVSGGEIRDSIESGNITYKDILKVQPFGNTVVSIDLTGKEVADYLATV
                     AQMKPDSGAYPQFLNTSFVVKKGKIEMLKIKGKSVDLNKKYRMTTFSFNATGGDGYPR
                     IDNRPGYINTGFIDAEVLIEYIREHSPLDAASYEPKGEVSWQ"
     gene            complement(1987..2157)
                     /locus_tag="OQQ76_004064"
                     /pseudo
     CDS             complement(1987..2157)
                     /locus_tag="OQQ76_004064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          704 a          422 c          528 g          617 t
ORIGIN      
        1 tctccaggaa acttggggcg gttcacgtca gtatcagacc atattaattg ctgaaactga
       61 taaacatcaa accttataga agggtgaatg ctgaaagggg gctatggtga tcgacgtgat
      121 gacaacgaca ggtaagaccg tgacctgata aacctgaatt gtgtcctaga cataaagtcc
      181 gtgaagggaa taaggctcag gtcagtgaat cttatagtgg cccgcagctc tgactgcaat
      241 aaggccggat acagagcagc aactactcgt cgatgtcaga acaacggaag ccttgcaaac
      301 ggggatgcgt tcatacaggt acaatgatac cgttaaaaaa aaacattacg ctaataatgt
      361 tcaccctgtc attactgaca ggaaatcctg ctatagcgta tgaaacagat aaagtatata
      421 aaataaccgt tctgcataca aatgaccacc atggacactt ttggcgtaac aatcatggtg
      481 agtacgggtt atcctcccaa aaaactctgg tggacaatat ccggcagaaa gtaataaata
      541 atggcggaag tgttctatta ttatctggtg gtgatattaa caccggtgta cctgaatcag
      601 accttcagaa ggctgaaccc gatattcgtg gaatgaatct aattggttat gatgcaatgg
      661 ccgtcggtaa tcatgaattt gataatcctc taaatatatt acgtcagcag gaaaaatggg
      721 ccacatttcc tttcctttct gctaacatat atcaaaaaag tacagggagg cgtttattca
      781 gtccatggaa aattttcatc cgtcagaatt tgaaaattgc agtcattggc ttgacgacag
      841 atgatactgc gaaaacagga aattctgaat attttactga tattgagttc cgtcaacctg
      901 ctgctgaggc gaggagtgtc attgatgaac ttaatcagca ggaaaagcca gatattatta
      961 ttgcggcaac acatatgggt cactatgaca atggcgagtc aggttcgaat gctcctggtg
     1021 atgttgaaat ggctcgcagt ttgccgactg gctcattagc aatgattgtg ggaggacatt
     1081 cacaagctcc tgtctgcatg gccagcgata ataaaaaaca gtggaattat attccgggga
     1141 caacctgtgt accagataaa caaaatggca tctggattgt acaagcgcat gagtggggaa
     1201 aatatgtcgg tcaggctgat tttgaattct gtaacggtac aatgaaactg gttaattatc
     1261 agttacaccc agttaatctc aaaatgagaa ttaccagaga agatggaaaa acggaatttt
     1321 ctttttacac ccccgaaatt actgaagatc cacagatgtt atccttactg acaccattcc
     1381 agaataaagg caaagcacaa ctggatgtga aggttggggt tgtgaacgga cgtctggaag
     1441 gggacagaag taaagttcgt tttgttcaga ccagtatggg ccatctgatt ctgagcgctc
     1501 tgacagaacg tattgacgca gattttgctg ttgtcagtgg tggggaaatt cgagattcca
     1561 tagagagtgg taacatcaca tacaaagata tactgaaagt tcagccattt ggtaatacgg
     1621 tagtaagtat tgatttgacg gggaaagaag tagctgacta cctagctaca gtggcacaga
     1681 tgaaaccgga ttccggagcc tacccacaat ttttgaatac cagctttgta gtcaaaaaag
     1741 gaaaaatcga aatgctaaaa ataaaaggta aatcggttga ccttaacaaa aaatatcgta
     1801 tgacaacatt tagctttaat gctactggtg gggatggcta tccacgtatt gataatagac
     1861 ccggatacat aaataccgga tttattgatg ctgaagtact tatcgaatat atccgggaac
     1921 attcaccgct ggatgctgct tcatatgaac caaaaggtga agtcagttgg cagtgataac
     1981 gtaattgacg atcatcacgt gttttttgct gacagtcgct gtgactttgt gaaagtagtc
     2041 tctgcggatg tttgcgatat gggaatgcag ttgctgtatt ttgtgtttct gcttctgcca
     2101 gttgttgctg aatttaacct tgcggcttaa ctgatgttgg agcgctgcca gcttcttcgt
     2161 caatttcgct gattaaagtt tattcattat ggcatgatct gcgtaagcgg ctcgtcagaa
     2221 ccgtattgat atttactaag agctcagatc aactttccag ggcaacagat c
//
LOCUS       DAJVUN010000307         2238 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.312, whole genome shotgun sequence.
ACCESSION   DAJVUN010000307 DAJVUN010000000
VERSION     DAJVUN010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.312"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..783)
                     /locus_tag="OQQ76_004065"
     CDS             complement(<1..783)
                     /locus_tag="OQQ76_004065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1970336.1"
                     /translation="MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGA
                     ATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPP
                     SLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPD
                     LPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRL
                     PELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTR"
     gene            875..961
                     /locus_tag="OQQ76_004066"
                     /pseudo
     CDS             875..961
                     /locus_tag="OQQ76_004066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015869530.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1262..1351
                     /locus_tag="OQQ76_004067"
                     /pseudo
     CDS             1262..1351
                     /locus_tag="OQQ76_004067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311139.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
     gene            1375..>2238
                     /locus_tag="OQQ76_004068"
     CDS             1375..>2238
                     /locus_tag="OQQ76_004068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001566618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
                     /protein_id="HCS1970337.1"
                     /translation="MGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLE
                     APGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWL
                     WDNWYGKSRRVMQRTFSSQSRQNVTQALPELHLGNAIIKPSRYVQNNQFSPLKKYPLV
                     EQFCYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYR
                     ATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGT
                     LQLQHISPERSY"
BASE COUNT          579 a          460 c          590 g          609 t
ORIGIN      
        1 gcgagtcgac aatggattgt tataaatatt aacatctgca taaatgtgca gattcatgat
       61 actgtctggc aatgtgttca gctgattgtt agggatatat agtgattgca gacgttgtgg
      121 aagttcgggc agtctgtgta gttggttttc cccaacgttt aaaagcctca gattttgagg
      181 aaggggcggt agctcttgta atctgttatc aaaagcactt agttcctgta gttcacatgg
      241 taattctggt aaggcagtaa gctggttgtt gccaacagaa agtttttgta gagccggggg
      301 aagatcaggt agcgtctcca ggctattgag aagggctgag agtgactgca aggaagatgg
      361 aagagaaggt aaacatgtta aaactctgtt aagtgaaaca tcaagagcga ccaggtgagg
      421 cggaagagcc gggagcctgc tcagtctgtt atcgctggct ttaagtacag ttaaggacgg
      481 agggagttct ggcagagagc gtagctcatt gctagagatg ttaagttctt gtatgtgcgg
      541 gggcaggtat gggagagagc gtaatctgag taaacttaaa ttgagggctg gctcttgaaa
      601 agccagacat attttcagta atcgaactgc ctgtgttcgg tcttctgttg cagcaccttc
      661 cttggcccag ttatcccaga tgcggtgata atccgtgata ttttgctctt ctacggataa
      721 acgggatata catcctaaac cacaaaagga gcggaaaaaa gaaggattgt gggcaggttt
      781 catttattat tgatcctcat tgtttatata ttaatatgtt cgtgcaaatg gagtgaggat
      841 tctttaaaaa aacgctcctg taaatagtta agaacaggaa gaactgttgg ggatgtggct
      901 ggccgaaaat gaaggggtga agttctggct caatgtgctg actgaactga aaaaacgcgg
      961 ttggtcgccc taccttttca tcaagccagt agtctgccca ccactgcatc atttctctgc
     1021 gcttatcgag atactgagca tggttgtaaa ttcaactaac ccagtgcgtt gacaaaaaat
     1081 tagcgcaaga agacaaaaaa tcaccttgcg ctaatgctct gtatcaggtc actaatacca
     1141 gctaagtagt tgattcatag tgactacata tgttgtgctt tgtcgcattt tgtagtctat
     1201 tatttaatct gtaacaacga taatacaatg aattttaatt ggtttttgtg attttgtcct
     1261 tcttctgaca tggaaggaca cccgatggat acccaacgat tccaatccca atttcattgg
     1321 catttatcgt ttaaattttc tggcgcgata gcagcgtgct tgtctctgtc tcttgtggga
     1381 acagggcttg ctaatgctga tgattcgctt ccttccagta actatgcgcc gcccgccggg
     1441 ggaacattct ttttgcttgc tgacagcagt tttagcagca gtgaagaggc gaaagtgcga
     1501 ctggaagcgc cggggcgtga ttatcggcgc tatcagatgg aagagtacgg cggcgtggac
     1561 gttcgcctgt atcgtattcc tgacccgatg gcatttttgc gccagcagaa aaacctgcat
     1621 cgcattgtgg tgcaaccgca atatctgggc gacgggctga acaatacgct gacctggctg
     1681 tgggataact ggtacggcaa atctcgccgc gtaatgcagc gtactttctc ttctcagtca
     1741 cggcagaatg tgactcaggc attacccgaa ttacatctcg gcaatgccat tattaaacct
     1801 tcccgttatg tacagaacaa ccagttttcc ccgctgaaaa aatatccctt ggtggaacag
     1861 ttctgttatc cactatggca ggctaaaccg gtcgagccgc agcaaggggt aaaactggaa
     1921 ggcgcatcca gcaatttcat ctcgccgcag ccgggtaaca tttatattcc tctcggccaa
     1981 caagagccgg gactgtacct cgtcgaggcg atggttggtg ggtatcgggc gacgacggtg
     2041 gtgtttgttt ccgataccgt ggctcttagc aaagtgtcag gcaacgagct tctggtgtgg
     2101 accgcgggta aaaaacaggg tgaagcgaag cccggctcag agatcttgtg gactgacggt
     2161 cttggcgtga tgacccgcgg tgtgaccgat gacagcggta ccttgcagtt acaacatata
     2221 tcgccagaac gttcatac
//
LOCUS       DAJVUN010000308         2227 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.313, whole genome shotgun sequence.
ACCESSION   DAJVUN010000308 DAJVUN010000000
VERSION     DAJVUN010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.313"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            315..1103
                     /gene="virF"
                     /locus_tag="OQQ76_004069"
     CDS             315..1103
                     /gene="virF"
                     /locus_tag="OQQ76_004069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858179.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family invasion system transcriptional
                     regulator VirF"
                     /protein_id="HCS1970338.1"
                     /translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
                     IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
                     KKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
                     DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
                     LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
     gene            complement(1096..1467)
                     /locus_tag="OQQ76_004070"
                     /pseudo
     CDS             complement(1096..1467)
                     /locus_tag="OQQ76_004070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            1466..1884
                     /locus_tag="OQQ76_004071"
                     /pseudo
     CDS             1466..1884
                     /locus_tag="OQQ76_004071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611947.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1958..>2227
                     /locus_tag="OQQ76_004072"
     CDS             1958..>2227
                     /locus_tag="OQQ76_004072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970339.1"
                     /translation="MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVK
                     QLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEILKKATAL"
BASE COUNT          721 a          412 c          451 g          643 t
ORIGIN      
        1 gttccgtata ggatattatg atgctggagt tttgcgaagc tccactcctt tccgaacatt
       61 tacacagata ttgcctaaga aaagtgaaac cataatatgg ttatagtccc tttcagtgca
      121 aatacttagc ttgttgcaca gagaaataga agctgcataa gctctttctt caaaaaatgt
      181 aaataaagtt aaatatagga aaaattactt aatctatctt aataacggaa agattttgta
      241 tacaatcact gttacagaaa tttcttagtt actctgtaaa cactaaatat agtttggtat
      301 attctgttga atttatgatg gatatgggac ataaaaacaa aatagatata aaggttcgct
      361 tgcataacta tattatttta tatgcaaaaa ggtgttcaat gacggttagc tcaggcaatg
      421 aaactttgac tatcgatgaa gggcaaattg cttttataga gcgaaatata caaataaacg
      481 tctccataaa aaaatctgat agcattaatc catttgagat tataagcctt gacagaaatt
      541 tattattaag cattattaga ataatggaac caatttattc atttcaacac tcctattctg
      601 aggagaaaag ggggttaaac aaaaaaatat tcctcctctc tgaggaggag gtttctatcg
      661 atttgttcaa atctataaaa gagatgcctt tcggcaaaag aaagatctat agtttagctt
      721 gccttttatc agctgtttct gatgaggaag ctttatatac ttcgatatcg atagcttctt
      781 ctcttagttt ttctgatcag ataaggaaga ttgttgaaaa aaacatcgag aagagatggc
      841 gtctttctga tatttcaaat aacttgaatt tatcagaaat agctgttaga aaacgactgg
      901 agagtgaaaa attaacattt caacaaatcc ttcttgatat tcgcatgcat catgcagcaa
      961 agcttttatt gaatagtcaa agctatatta atgatgtatc aagacttatc ggaatatcaa
     1021 gcccatctta ttttataagg aaatttaatg aatattatgg tataactcca aagaaatttt
     1081 acttatatca taaaaaattt taaatgcttc atagcccatc gctattgcca gatgggtttt
     1141 ccccacacct gatggcccta gtaatacgat attttcatta cgttctatga agctgagtga
     1201 gcgtaacgac tggagttgct tctgcggtgc tctggtggcg aatgtgaagt catactcttc
     1261 gaacgttttc accgccggga aggctaccat tcgggtatac atcgcctgtt tacgttgatg
     1321 acgtgccagt ttttcttcat gaagcagatg ctccaggaag tccatataac tccattcctg
     1381 gtctactgcc tgttgtgaca gcgcaggcgc tgcgcttatg tactgcaccc attttgttgg
     1441 acgatgaaat ggaatagccc ctaatatgtc aaagccaaaa tacccttttg aaaagcgcct
     1501 tgaagtcgtg aatcactact tcactactga tgatggttac aggatcatct cggcacgttt
     1561 tggtgtcccc gaacccaggt caggacatgg gttgccctct atgaaaaaca tggagaaaaa
     1621 ggcttaattc ccaaacctaa aggtgttagt gctgatccag tgttgcgtat taaggtcgtg
     1681 aaagctgtga ttgagcagca catgtccctt aatcaggctg ctgctcactt tatgcttgct
     1741 ggtagtggtt ctgtagccag gtggctgaag gtttatgaag agcgcggaga agctggttta
     1801 cgcgcgctca agattggcac caaaagaaac attgcaatat cagttgatcc agaaaaagcg
     1861 gcatcagcat tggagctgtc aaaagtgaag tggcacactg aatttggcca cctgaacaga
     1921 ggtgatatgc tcacctcaga acaacacagg tgctccaatg aaaaaaagaa attttagcgc
     1981 agagtttaaa cgcgaatccg ctcaactggt tgttgaccag aaatacacgg tggcagatgc
     2041 cgccaaagct atggatgttg gcctttccac aatgacaaga tgggtcaaac aactgcgtga
     2101 tgagcgtcag ggcaaaacac caaaagcctc tccgataaca ccagaacaaa tcgaaatacg
     2161 taagctgagg aaaaagctac aacgcattga aatggagaat gaaatattaa aaaaggctac
     2221 cgcgctc
//
LOCUS       DAJVUN010000309         2209 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.315, whole genome shotgun sequence.
ACCESSION   DAJVUN010000309 DAJVUN010000000
VERSION     DAJVUN010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.315"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..924
                     /gene="gap"
                     /locus_tag="OQQ76_004073"
                     /pseudo
     CDS             1..924
                     /gene="gap"
                     /locus_tag="OQQ76_004073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
     gene            complement(966..>2209)
                     /gene="aldA"
                     /locus_tag="OQQ76_004074"
     CDS             complement(966..>2209)
                     /gene="aldA"
                     /locus_tag="OQQ76_004074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HCS1970340.1"
                     /translation="ERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTAD
                     YIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALL
                     TGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVS
                     MTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQV
                     CNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVA
                     RAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEEA
                     ISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIG
                     GADGKHGLHEYLQTQVVYLQS"
BASE COUNT          562 a          599 c          505 g          543 t
ORIGIN      
        1 atagacgttg tcgctattaa tgatctcact tccccaaaaa ttctcgccta cctgctgaaa
       61 catgattcaa actacggacc attcccctag agcgttgatt ttacggaaga ttcacttatc
      121 gttgatggga aaagtatcgc ggtttacgcc gaaaaagagg ctaaaaatat tccgtggaaa
      181 gcgaaaggtg cagaaatcat tgtcgaatgt actggctttt atacctccgc cgagaaatcg
      241 caggcgcatc ttgatgctgg tgcgaagaag gtgttgattt ccgcccctgc cggtgaaatg
      301 aaaactatcg tttataacgt caatgacgac actctggatg gcaacgacac cattgtttcc
      361 gtggcgtcat gcaccactaa ctgccttgcg ccgatggcca aagccttgca tgacagtttc
      421 gggatagaag tcggcacgat gacgaccatt catgcctata ctggcaccca gtcactggtg
      481 gatggcccac gtggtaaaga tttacgtgct tcacgcgcag cggcagaaaa tatcattccc
      541 cacactacgg gggcggcaaa agccattggt ctggagatcc cggaactgag cggcaaactg
      601 aaaggtcatg cgcaacgcgt gccggtgaaa acaggttcgg tcactgaact ggtatcgatt
      661 ctcggaaaaa aagtgactgc cgaagaggtg aataacgcac ttaaacaagc aaccaccaat
      721 aacgagtcat ttggttatac cgatgaagaa atagtctctt ccgatatcat tggcagccat
      781 ttcggttcgg tgtttgatgc tacgcaaacg gaaattaccg ccgtgggcga tttacaactg
      841 gtgaaaacgg tcgcctggta cgataacgaa tatggcttcg tcacgcagct tattcgcacc
      901 ctcgaaaaat tcgctaaact ctgacgcgca caggcggagg aaaaaacctc cgcctctttt
      961 actcattacg actgtaaata aaccacctgg gtctgcagat attcatgcag gccatgttta
     1021 ccatctgcgc cgccaatacc ggatttacgc catccggcgt ggaagccttg catagcttcg
     1081 aagttttcac ggttgatgta agtttcacca aacttcagcc ctttaatggc tttcatcgcg
     1141 acgttcagat tttgggtata gattgatgag gtcaggccgt aatcactgtc attagccatt
     1201 gagatagcct cttccagcgt gtcaaatgcg accaccggca gaaccgggcc aaaggtttcc
     1261 tcatgcataa tcgacatttc ctggcgaaca tccagcagca atgtcggcgg ataataatat
     1321 cctttcccct ctaccgcttt gccacccaac gccactctcg ccccttcttc tactgcgcgc
     1381 gccacttttt gctcaaccct ttccaacgcc gcggcgttaa tcaacggccc catcgcaatg
     1441 tcgttgcgtt cagcggggtt accaaattga accgcctgca tcgcttcacc cagccgattg
     1501 acgaactgat cataaatgcc tttctgtaca taaacacgtt ctgcacagtt acacacttgc
     1561 ccactattaa tgacgcgtga atcaacgatg gctttgactg ccagttcaag atcggcatcg
     1621 tccattacga tagctggtgc tttacccccc aattccagac acactttggt gatgtttttc
     1681 gccgcagtcg ccatgatctt ctcacctgca gagacgctgc ctgtcatact gaccattgcg
     1741 acctttgggt tacccgccag ttcttgccca acggtttcac cacgccccag tacaaggtta
     1801 aacacgccgc gcggaaggcc tatttcatcg acgattttgg cgaatgcaat cgcattgttt
     1861 ggcgtaaatt cactaggttt aatgacgatg gtattaccgg tcaaaagagc gggagccatt
     1921 ttgcgggcaa tgaggaagaa cgggaagttc cacggcagaa tgccggtagt cacaccaagc
     1981 gcacgtttaa acaaaagaat attttctcct ggacgatcgc tttgaataat ctcgccctcg
     2041 taacgccgtg cccactccgc catgtaatcg atatagtcgg cagtaaaagc cacttcgact
     2101 tcagccagct gctggatctt gcccccttct tcaacaatca gcgcactgat ttcactggcg
     2161 cgttcgcgga tcccggcgga gattttgcgc aaccaactgg cgcgttcaa
//
LOCUS       DAJVUN010000310         2171 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.316, whole genome shotgun sequence.
ACCESSION   DAJVUN010000310 DAJVUN010000000
VERSION     DAJVUN010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.316"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(186..1136)
                     /gene="corA"
                     /locus_tag="OQQ76_004075"
     CDS             complement(186..1136)
                     /gene="corA"
                     /locus_tag="OQQ76_004075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HCS1970341.1"
                     /translation="MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQS
                     ELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF
                     TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSR
                     VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE
                     ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY
                     GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL"
     gene            1506..>2171
                     /locus_tag="OQQ76_004076"
     CDS             1506..>2171
                     /locus_tag="OQQ76_004076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HCS1970342.1"
                     /translation="MAHRLLIGKGMITLNLKRIFLTLTLLPLFSVAADDCALSDPTLT
                     VQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLG
                     LYIENGQQKVALNLASGEGNFFIRPGGVFYVAGDKVGIIRLDAFKTSKEIQFAVQSGP
                     MLLENGVINPRIHPNVASRKIRNGVGINKQRNAVFLLSQQATNFYDFACYAKAKLNVE
                     QLLY"
BASE COUNT          590 a          522 c          524 g          535 t
ORIGIN      
        1 aacactatca ataagttgga gtcattaccc ccttatcgta acactcatat tggtattaac
       61 gattttactg agtatcaatt aacacaagaa aataaaatag agcgagtttt caatccgcat
      121 gactttaaaa aagacaattt ttagaaataa gccggataaa aaaatagctt tatccggcac
      181 tcatattaca accagttctt ccgcttaaag tacagatacg gtgccaggcc cgcgaggatc
      241 ataaagataa tcgcgccagg gtagccgaag ctccacttca gttctggcat aaactcaaag
      301 ttcatgccat agctggaagc aacgagcgtc ggcggcagga ataccacgga taccaccgag
      361 aagattttga tgatgcggtt ctgctcgatg ttgataaaac ccatcgccgc ctgcatcagg
      421 aagttcacct tctggaacag agattcgtta tgcggcagca gggattcgat atctcgcagg
      481 atttcacgcg cctgctccag ttgtccaccc ggtaagcgtg ctttacgtac caggaagttg
      541 agcgcgcgct gggtatccat cagacacagg cgtactttcc agccgatatc ttccagttcc
      601 gccagcgtgg agagcgcctc atcgtactca tcgccctgat gcccttccat aatcacccgg
      661 ctcaactgct ccaggtcgct atagatattt tcaatttcat ctgccaactg ttcgattttg
      721 gtttcgaaca gatccagcag cagctcgtag gcgttaccgt ctaccatcga ctggctacgg
      781 gcacgcatac gatacagacg aaaagcgggc agttcacgct cacgcagagt aaacagacga
      841 ccatcacgga tggtaaatgc cacagtggag ttaccggcgt gatcttccgc atcttcaaag
      901 aagaagaagg agtgaatatg caggccgtcg tcgtcttcaa agaaacgtgc cgatgcttcg
      961 atgtcttcca gttccgggcg ggttgccagg ctctggccaa gttcagattg tacacgcagt
     1021 cgctcgtcgt cgtccggttc gacaagatca atccatactg catttacaag gggttgtgac
     1081 tcttcaactt ccagccgggt cagtcggtta ttttccagtt gaaatgcgct cagcatgacc
     1141 gggactccca atgcttaaaa tatcggacag ttcggtgggc acacagaaac aaattgggtt
     1201 tcagaccatt aaacagcctg actcagcgcg acgggaaaaa ttgaggtcgc tgacaaccgc
     1261 taaggctatc agcaaaaagg gatagcctta ggagttgatc ctggatgaca ggatagtgag
     1321 ccagtatcta ctgggtgtgt ccaaggcgaa tgtcctctta gaatgatcgt gcgcgcatgt
     1381 tacgccagca aaattttgcc gtcaacacgc aacagaacac cacagaacaa tagttgaact
     1441 tcgcgctttt tggtactcgt caaggtcgct aacaggataa aaaaatccca catccaggac
     1501 ctataatggc gcatcggcta ctcattggta aaggaatgat caccttgaat ctcaaacgga
     1561 tttttctcac cctcacctta cttcccttgt tttctgttgc cgctgatgat tgcgcactct
     1621 cagatccgac gctgaccgta caggcgtata ccgttaatcc tcaaacagag cgggtgaaaa
     1681 tgtactggca aaaagccaat ggcgaagcgt ggggaacgtt acatgctctg ctggcggata
     1741 ttaatagtca gggtcaggtg cagatggcga tgaacggcgg catctatgat gaaagctatg
     1801 cgccgctcgg tttgtacatc gaaaacggtc agcagaaggt ggcgttaaat ctcgcttcag
     1861 gtgaagggaa tttctttatc cgtcctggcg gcgtgtttta tgtcgcggga gataaagtcg
     1921 gcatcattcg tctggatgcc tttaaaacca gtaaagagat tcagtttgcg gtgcagtcag
     1981 ggccaatgtt attagaaaac ggcgtaatta atccacgcat tcacccgaat gttgcctcgc
     2041 gtaaaattcg taacggtgta gggattaata aacaaaggaa cgccgtgttt ttgttgagcc
     2101 agcaggcgac aaatttttat gattttgcct gttatgccaa agcgaaactg aacgttgagc
     2161 agttgcttta t
//
LOCUS       DAJVUN010000311         2168 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.317, whole genome shotgun sequence.
ACCESSION   DAJVUN010000311 DAJVUN010000000
VERSION     DAJVUN010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.317"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            81..281
                     /locus_tag="OQQ76_004077"
     CDS             81..281
                     /locus_tag="OQQ76_004077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970343.1"
                     /translation="MHQKTAEHEQTRILLTIKNGKVIFIRHVHDDELVGTLSTFLFIA
                     EKAGYDVIAPADEDEDEDEDEE"
     gene            287..883
                     /locus_tag="OQQ76_004078"
     CDS             287..883
                     /locus_tag="OQQ76_004078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970344.1"
                     /translation="MQYDEFQAEATANGIRTGSMTIDYHDAIRRLDAGEFDTPNVRGL
                     RILQCLAQADEAGLLGKLPVEMKVAQWRWLYVTTFINEEEDKNGTIDILNEHGTTEHG
                     TTEHAVVYNGMYGFMTIYPGPIRFALQQYIEWNLIQKYGEAEGMGRALFLYQKMLTTS
                     PDKGFILSDMGREGLEILLDEIINEMNTHGMQSETDIK"
     gene            1132..1449
                     /locus_tag="OQQ76_004079"
     CDS             1132..1449
                     /locus_tag="OQQ76_004079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000179800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4752 family protein"
                     /protein_id="HCS1970345.1"
                     /translation="MATDSQLTIETALNVGLALLGYFYIVFCSGRWLSLLFLKKWNKR
                     RKQDERQKAMNAFSEAFGIDGMEPGDPARAISRGGVVILVYRSEEKNDDHKTTSRKNH
                     ISP"
     gene            1403..1717
                     /locus_tag="OQQ76_004080"
     CDS             1403..1717
                     /locus_tag="OQQ76_004080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970346.1"
                     /translation="MTITKQRVEKIIYRHEMGLNSDVTAEEVYDLAVLALNLSNIANL
                     KRYELDMDGCDSCGQDCGADMTEDPDGDYVLFDDVVKLFEFDTTTQKLEIPAKEAASE
                     QD"
     gene            1704..>2168
                     /locus_tag="OQQ76_004081"
     CDS             1704..>2168
                     /locus_tag="OQQ76_004081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HCS1970347.1"
                     /translation="MSKIDYQALREAAEQATQDEWVAYILPGHNGIYPARTSEGRHCG
                     YFIDWPGVCQGRESISIRTYAVNCNDAWLNTEGDDISGSYVKYKDHQEVVAALEAKCA
                     ALAAENAGIKSAIPESRDIEDDNDNMDDVSLAEDFGFNHAIERMRRQIPETPT"
BASE COUNT          680 a          427 c          546 g          515 t
ORIGIN      
        1 gcctgcctta ttgcacaata cggtgaaaat tacatgcata ttgcctgctt atttctgcgt
       61 aaagcatacg ggagataata atgcatcaga aaacagcaga acacgaacaa accagaatat
      121 tgctgaccat caaaaacggg aaagtaatat tcattcgcca tgttcatgac gatgaacttg
      181 taggaactct ttcaacattc ctgtttattg cagaaaaggc aggatatgac gttattgcac
      241 cagcagatga agatgaagat gaagatgaag atgaggaata aatatcatgc aatacgatga
      301 attccaggct gaagcaacag ccaatggtat acgaactggc agtatgacga ttgattatca
      361 cgacgccata cgtcgtctgg atgccggaga attcgatact cctaatgtgc gaggtttacg
      421 tatccttcag tgtctggcgc aagccgacga agcaggatta ctgggtaaac ttccggttga
      481 gatgaaggtt gctcagtggc gatggttgta tgtgacgaca ttcatcaacg aagaagaaga
      541 caagaacggc acaattgata tcctgaatga acacggaaca actgaacacg gaacaactga
      601 acacgccgtg gtatataacg ggatgtatgg gtttatgacg atatatcccg gccccattcg
      661 atttgcctta caacagtata ttgaatggaa tttaattcaa aaatacggcg aagctgaagg
      721 aatgggaaga gcgctgtttc tttatcagaa aatgctcact acttcccctg ataaaggttt
      781 cattctttca gatatgggtc gagaagggct tgaaatcctt ctggatgaaa ttattaacga
      841 aatgaatact catggcatgc aatccgaaac agatattaag taaaagggac cacatgaccg
      901 ttatcgagta tatccaggaa aatccagatt gcagtagaga agatatatcc ctcgcacttg
      961 gaagaagcgc aacttctatc agtaataaat tatcacggtt attgtggaat gggttaatag
     1021 tacgaactgg agaaaaaaac aaaatgattc tgtactgcgt aaacaatctg ccgtttggat
     1081 acagcaatcc cctaagtgtt atgttcaacc agttacttaa acaggtaaga aatggcaact
     1141 gactcacaac taaccataga aacggccctg aatgtcggcc tggcgctcct tggttatttt
     1201 tacatcgtgt tctgcagcgg acggtggctg tcgctgttgt tcctgaaaaa atggaataaa
     1261 cgccgtaagc aggatgaacg ccagaaggca atgaatgcgt tttccgaagc cttcggaatt
     1321 gacggcatgg aaccagggga tccagctcgc gcaatcagca gagggggtgt agtaatcctt
     1381 gtatatcgga gtgaagagaa aaatgacgat cacaaaacaa cgagtagaaa aaatcatata
     1441 tcgccatgaa atgggactga acagcgatgt cactgccgaa gaggtttatg acctggctgt
     1501 actggcgctg aatttatcaa atatcgcaaa cctgaagcga tacgagcttg atatggatgg
     1561 ttgcgactcg tgcggtcagg attgtggcgc agatatgact gaagatcctg atggtgatta
     1621 tgtcctgttt gatgacgtgg ttaagttgtt tgaatttgat acaaccactc aaaagttaga
     1681 aatcccggca aaggaggctg ccagtgagca agattgacta tcaggcactg cgcgaggcgg
     1741 cggaacaggc aacgcaagat gaatgggtag catatatttt gccgggtcat aacggcattt
     1801 atcctgcgcg cacgtctgag ggtaggcatt gcggatactt tattgactgg cctggcgtct
     1861 gtcaggggcg ggagagcatc agcatcagaa cctacgcagt gaattgcaat gacgcatggc
     1921 taaacaccga aggtgatgac atctccggct catacgttaa gtacaaagac catcaggaag
     1981 tggttgccgc tcttgaagcc aagtgcgcgg cgctggcagc ggagaatgcg ggaataaagt
     2041 ctgcaattcc agaatcacgg gatattgagg atgacaatga caatatggat gacgtatctc
     2101 tcgcggaaga cttcgggttc aatcatgcaa tagaacggat gaggagacag atacctgaaa
     2161 cgccaacc
//
LOCUS       DAJVUN010000312         2153 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.318, whole genome shotgun sequence.
ACCESSION   DAJVUN010000312 DAJVUN010000000
VERSION     DAJVUN010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.318"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            153..474
                     /locus_tag="OQQ76_004082"
                     /pseudo
     CDS             153..474
                     /locus_tag="OQQ76_004082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232281.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(508..714)
                     /locus_tag="OQQ76_004083"
     CDS             complement(508..714)
                     /locus_tag="OQQ76_004083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970348.1"
                     /translation="MTVSYKITYEHRDGDQIRMEEVLFHSEHEPTKDEIHDAVRKDTV
                     RFNSPSNGVTAVSGFKVISVVPVP"
     gene            complement(1212..1285)
                     /locus_tag="OQQ76_004084"
     tRNA            complement(1212..1285)
                     /locus_tag="OQQ76_004084"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1251..1253),aa:Gly,seq:ccc)
     gene            complement(1364..2119)
                     /locus_tag="OQQ76_004085"
     CDS             complement(1364..2119)
                     /locus_tag="OQQ76_004085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311765.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HCS1970349.1"
                     /translation="MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTV
                     KRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTT
                     KTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
                     AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGST
                     DAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC"
BASE COUNT          578 a          510 c          464 g          601 t
ORIGIN      
        1 aaccgtaata caataaacat ccgaaataat ttcgaaagca actcattttt actctgcaaa
       61 caatcagaaa agacttaatt ttgctaagtt aatgcattaa tctaaaaacg ctttaaatca
      121 atacataacc attatctctt gggattattt acatgcgcaa aagtttaatg ctgttacttg
      181 cttcaacatt gattatttct ggatgtgcaa caaaaaaaca actcgttcca actggtggaa
      241 gcaaatcaga cggcacagtt aggatgagtt attcttacgg tatgtttgaa agtcctgttg
      301 tagatccaca acaaggcagg aatgcagcca aagcgcgttg tgccgcttag gggatattca
      361 ggagccgagc cttttggtgg attcacttct caatgttcac aaccttcttc atctggttgt
      421 atgcaaacac ttgtgactat cgaatatcaa tgcactggcg atattaagaa gtaataatta
      481 ggggcttcca gccccttcta taaccattca tggaacaggg acaaccgaaa tcactttaaa
      541 ccctgaaaca gccgttactc cattagatgg agaattaaat ctcacagtat cttttcttac
      601 tgcatcatga atttcatctt ttgttggttc atgctctgaa tggaataaaa cctcttccat
      661 tctaatttga tcaccgtctc tatgctcata agtaatcttg tagctaacag tcatatcaac
      721 ctcatgcagg ggaattgtga gattattata gacaatagaa accataaagc cccgttggtg
      781 atacagcaac aagcgggagc gtagcgactt catcagattg tcagaaagat cacaccttat
      841 caggataacc gtgtacccgt tgagagcgtg gctgaaacgc tgatagagct tgcatatggt
      901 ttgcaaggac caatatcacc ataaacctgt ttacgcagcc acaaggccgc acatcgggct
      961 taaatgcgtg tgttcagtct gtcgatgaca ttacaatgcc tggatgggct ttatcttcac
     1021 gttgtgctat cgcggtgtga gaggtgcaac tgccgccaac gttaggttat actgtcatct
     1081 caccgtgtaa cttaacgtga cagttactaa gggcggttca caatggtaga actcctaagc
     1141 aaattaaata ggtaactgtt taagttgctg acagagaaga cttttttagt cttctccacc
     1201 tggggagatt ctggagcggg cgaagggaat cgaaccctcg tatagagctt gggaagctct
     1261 cgttctacca ttgaactacg cccgcttcga gatgcgtaag gcattataaa ccttacgctc
     1321 tccttagcaa gtgccgcgct gctgactgct gattaattcg ccatcagcat tttggcttgc
     1381 tgccctgcgg cggcaagtaa cgtagcggat caattgccgt tgctcggtaa cgaatctgga
     1441 aatgcaggcg aacagatgcc gcatccgtgc tccccatagt ggcgattttt tgcccagcct
     1501 tcacgctttg cccattattt accagcatcg tgtcattatg ggcgtaagcc gtaatgtaat
     1561 cttcactgtg tttaatcatg atgagattac cgtagccacg cagctggttg cccacataca
     1621 ccacctttcc tgcacccgcg gcgtaaatag gtgtaccccg tggagctgag atatcaatcc
     1681 ctttattgcc gccatctgct gtcgaatacg gcatgataac tttccctgtc gttggccata
     1741 accaacaacg ttgccctact ggcggccagg aagatttcgg taccgctgat gacggtgtaa
     1801 ccgatgcggt tttggtcgtt gatttggcgg ttgatttacg tgtactactg ctacttttcg
     1861 ccccacccag ttttagtttc tgaccaactt caatggtgta agggggggaa atgccgttca
     1921 gtcgcgccag ttcttttacg ctggttcccg tggtgcgcga aatacgatat agcgtatccc
     1981 cccgtttcac ggtgtaaacg gagccggaat acgttcctgt atcggatgat ttgctacccg
     2041 aacagcccgc caaaagcagt ccaaccgata acaacatcac gatacccaga gattttttat
     2101 tcaggcgtcc cgcactcaaa atctttcctc gcttaaaaaa caagacgcct tat
//
LOCUS       DAJVUN010000313         2152 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.319, whole genome shotgun sequence.
ACCESSION   DAJVUN010000313 DAJVUN010000000
VERSION     DAJVUN010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.319"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(148..417)
                     /locus_tag="OQQ76_004086"
     CDS             complement(148..417)
                     /locus_tag="OQQ76_004086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1970350.1"
                     /translation="MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEHIAPLQD
                     AVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM"
     gene            474..1142
                     /locus_tag="OQQ76_004087"
     CDS             474..1142
                     /locus_tag="OQQ76_004087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HCS1970351.1"
                     /translation="MVKLMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEH
                     LLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASKRAGESKIKHK
                     ISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATI
                     LGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSA
                     SGKK"
     gene            1458..>2152
                     /locus_tag="OQQ76_004088"
     CDS             1458..>2152
                     /locus_tag="OQQ76_004088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1970352.1"
                     /translation="MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGE
                     NRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALK
                     ELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMS
                     LELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQL
                     SPRIMQTLLQQTA"
BASE COUNT          649 a          470 c          399 g          634 t
ORIGIN      
        1 ccgttttgcc tgtgtgttga ataattccac tgcagttata taaaatcggt aacggctgga
       61 aatcattcaa tactcgcact atcgaaagtt caccagccaa ccgcagcacg tcctgcatac
      121 gtcgtgtctg cggtttttct ttttcgctta cattgtgtct ggttcttccg gccactcaat
      181 atcaggtgca gttgatgtat caacacggtt cagcaacacc cgatacttct tccaggcttc
      241 cagcaacgag ttttcttcct ccgttgcgat ctccagatct acagcatcct gaagtggcgc
      301 aatatgctca ctgaattcct ggatgtagaa ctgtgtggtg acggtcttcc agccattcgg
      361 ctcctgctgt atcgaagcat accaggctat ttcaatatcg ctatgctgcg gcagcattta
      421 accccttgta attcatcgcc ataattgatt taattcacaa ataaaactat aatatggtga
      481 aattaatgaa aaaaaacaca gatgatgggg ctaaaattta cacaccactt accctaaagc
      541 tttatgactg gtgggttttg ggagtatcaa atcggcttgc atggggatgt cctacaaagg
      601 aacaccttct tccacacttt ctggaacatt taggtaacaa ccatctggat attggtgttg
      661 gaactgggtt ttaccttact catgtacctg agagtagtct gatatcttta atggatttga
      721 acgaagctag cctgaacgcg gcatctaaaa gggctgggga atcaaaaatt aaacataaaa
      781 ttagccatga tgtttttgaa ccttatcccg cggcgttaca tggtcaattt gattccattt
      841 ccatgtttta ccttcttcac tgcctgcctg gaaatatatc tacaaaaagc tgtgtaatac
      901 gcaatgcggc gcaggcctta actgacgatg gaactctata cggagccaca attcttggcg
      961 atggagttgt gcacaatagc ttcggtcaaa aactgatgcg catttacaat cagaaaggca
     1021 tcttttcaaa cacaaaagat tccgaagaag gcttaacaca tatactctca gagcatttcg
     1081 agaatgttaa aaccaaggtt caaggtactg tagtaatgtt ttccgcttca gggaaaaaat
     1141 agcatccaac cgcagcacgt tcttgcttaa gacgtgctac ggtttccttt acgatttggg
     1201 gttgcgactt tacctctatt gataatgcat tccggcagaa cgttcaaata tgaacgtacg
     1261 atatttaact aaccgaaaaa caaaatatag cacaggcgag acatttacca tctaagaaaa
     1321 tagtatcgtt tttttacagt taaatcaaca tcacttcctt aaaatgaaaa caataaattt
     1381 caatcctgaa atattttatt ttagcttatt atttcccagt atcacatttt atcaggatat
     1441 ccttctgcga ggttattatg cttcctgtaa ataatccccc cctatccact ggaaacgtct
     1501 ctttttacag aactacatca atcgacaatg ttcacaataa ttatctctcc gaatgggttg
     1561 aatggactaa aaacagcatt tccggagaaa acagggaaac tgcttttacc cggctccaat
     1621 tatgtctgga gaacagtgaa acatcgttgg acttatcttg tttaggtctc agatctctac
     1681 cacgattgcc tgacaatctt gatgaaatta atgtaagcaa taaccaacta tcaatgctcc
     1741 ccgagctacc aagggcattg aaagagctga atgcaagcag taatcaatta tctgcacttc
     1801 ctgaattacc agtgtcgctg gaatatataa atgtgagtga taaccatttg ttcgcacttc
     1861 ctgaattacc tgcgtcacta gaatatatta atgtaagtga caatcacctg tctgtacttc
     1921 cgaggttacc aatgtcattg gaattacttg atgcagccag aaatgctttg gaagtaatac
     1981 cagattttcc agaaagagat gatcatatta taagaatatt ctggcttaat cagaaccgga
     2041 tcacggcaat tccggaaagc atacttggcc tcagttctga tagcgttgtc aatcttagag
     2101 aaaatcaact atctcccaga ataatgcaaa ctttgttaca acaaaccgcc ca
//
LOCUS       DAJVUN010000314         2132 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.320, whole genome shotgun sequence.
ACCESSION   DAJVUN010000314 DAJVUN010000000
VERSION     DAJVUN010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.320"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            173..763
                     /locus_tag="OQQ76_004089"
     CDS             173..763
                     /locus_tag="OQQ76_004089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HCS1970353.1"
                     /translation="MDSLQDDYTKLLYGLMPPGPAWSDTDGVLDGLAPSLVRVHQRAD
                     ELVIEIDPGQSTELIERYEELYGLPDSCSPVGTQTLRQRQQRLEAKANVAGGINEQFF
                     LDQLEALGYTGVTIEQFQHLDASPDPEWGDRWRYFWRVTLPVDAGAQWQTCTDACNTP
                     IRTWGDTVAECVINKLCPSHTVVLFSYPDEDEDAQD"
     gene            750..1418
                     /locus_tag="OQQ76_004090"
     CDS             750..1418
                     /locus_tag="OQQ76_004090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004981765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970354.1"
                     /translation="MHRIDTLTAVKDKFGPGKNGFTDGNLRTGRLATWLNSAMWNAIQ
                     EEICGVIEKAGIELNKEEHDQLYKAILLLVGGAINEEALLIKNNLSDVEDRDEAVENL
                     GLKPTVDKAKNAVQRDGDTMTGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEG
                     QGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGGIQLLSGI
                     TIQV"
     gene            1439..1960
                     /locus_tag="OQQ76_004091"
     CDS             1439..1960
                     /locus_tag="OQQ76_004091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970355.1"
                     /translation="MDVYANGQHVFSFQNGVAIALKNIQAGNAKKFTLSSANNSTKNA
                     AFYLWGNPSRPVVAELGDDSGWHFYSQRNTDGSITFAVNGQVIPLNYGNFDARYKHRT
                     EGVQDVRYGYEMYYNPGSNTVSWTFRSPSGHGLSGIAISDTGRNSADNVNGVYYRPLQ
                     KLINGTWYNVASI"
     gene            1963..>2132
                     /locus_tag="OQQ76_004092"
     CDS             1963..>2132
                     /locus_tag="OQQ76_004092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1970356.1"
                     /translation="MLHLKNITVGNPKTAEQYQLTKQYDVTWLFSEDGKNWYEEQKNF
                     ASDTIKMVYTGDG"
BASE COUNT          567 a          453 c          596 g          516 t
ORIGIN      
        1 tgccagaggg gcgtatgtat ctgtccagaa tcagtgaggc catcagtttg tctgctggtg
       61 aagtggccca ccggttaatc gtcccttcat cggatattga cctgggggag accgagcttc
      121 cggtgctcgg cgagatcacc tagcaggctt atgacccggc aaggagtaaa taatggattc
      181 gttacaggat gattatacaa agctgctgta cggactgatg ccgccggggc ctgcatggtc
      241 agataccgac ggtgtacttg acggtctggc accatcgctt gtgcgtgttc accagcgggc
      301 tgatgaactg gtgattgaaa tcgatcccgg tcagtccaca gagctgattg aacgttatga
      361 agaattgtat ggtttacctg attcctgttc ccctgtcgga acccagacat tacgccagcg
      421 tcagcaacgt cttgaagcaa aagccaatgt ggctggtggc ataaatgagc agttcttcct
      481 ggatcagctt gaggcgctgg gatataccgg cgtaacgatc gaacagttcc agcacctgga
      541 tgcaagcccc gatccggaat ggggagatcg ctggcgttat ttctggcgtg tgacgttgcc
      601 ggtggatgcc ggtgctcagt ggcagacatg cacggacgcc tgcaacacac cgatccggac
      661 gtggggggat acggttgcgg agtgcgtgat taataaatta tgtccgtcac acaccgtcgt
      721 tttattttcc tatccagatg aggatgaaga tgcacaggat tgatacgctg actgcggtaa
      781 aagataagtt tggtccgggt aagaacggat ttactgacgg aaatcttcgc acaggacgtc
      841 ttgctacctg gctgaacagt gccatgtgga atgccattca ggaggaaatc tgtggtgtca
      901 ttgagaaggc cgggatagaa ctgaataaag aagaacacga ccagctatat aaggctatat
      961 tattgctggt gggcggtgca attaacgaag aggcattgct gataaaaaat aacctttcgg
     1021 atgtggaaga cagggatgag gctgttgaaa acctcggatt aaaacccacg gtggataagg
     1081 caaaaaatgc cgttcagcgt gatggcgaca ccatgaccgg agagctgaaa atccgtggtg
     1141 ttaatgcgct gaggattttc aacgaagctt ttggcctgat ttttcgtcgt tcggaagagt
     1201 gcctgcacct tattcccacc agtgaaggtc agggggaaaa tggcgatatt ggtccccttc
     1261 gcccgttcac cattaatctg cggacgggtg aaatatccat gtcgcataaa gtgtctgttg
     1321 gcggtggttc gcaggtcaat ggtgcgctgg gtatcggcgt tcagaacgcc ctgggggggg
     1381 gaattcaatt gctttcgggg ataacgatac aggtataaaa caaaacggcg acggcattct
     1441 ggatgtttat gcgaatggac agcatgtatt tagtttccag aatggtgtgg cgatagcgtt
     1501 aaaaaatatt caggccggaa atgctaaaaa attcacgtta tccagcgcca acaactccac
     1561 gaaaaatgca gcgttttatt tgtggggtaa tccatccagg cctgttgttg cagagcttgg
     1621 tgatgattcc ggctggcatt tctacagcca gagaaatacc gatggtagta tcacattcgc
     1681 tgtaaacgga caggtaattc cgttaaatta cggaaacttc gatgcccgct ataaacatcg
     1741 aactgagggg gtacaggatg tgcggtatgg ttatgaaatg tattacaacc ctggcagcaa
     1801 caccgtttca tggacgtttc gctcaccttc gggacacggg ttgtcaggga tagcgatatc
     1861 ggataccggc cgtaactcag cggataacgt caacggtgtg tattaccgac cgctgcaaaa
     1921 actgattaat ggcacctggt ataacgtagc gagtatttaa caatgttgca tttaaaaaat
     1981 attacggtag gtaatccgaa aaccgcggaa caatatcagc tgacaaaaca gtatgatgtc
     2041 acctggcttt tttcggaaga cggcaaaaac tggtatgaag aacagaagaa ctttgccagt
     2101 gacaccataa aaatggttta caccggagac gg
//
LOCUS       DAJVUN010000315         2118 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.321, whole genome shotgun sequence.
ACCESSION   DAJVUN010000315 DAJVUN010000000
VERSION     DAJVUN010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.321"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..689)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ76_004093"
     CDS             complement(<1..689)
                     /gene="ipaH9.8"
                     /locus_tag="OQQ76_004093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH9.8"
                     /protein_id="HCS1970357.1"
                     /translation="MLPINNNFSLPQNSFYNTISGTYADYFSVWDKWEKQALPGEERD
                     EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
                     YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
                     NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
                     HALQALQRLTSS"
     gene            complement(951..1046)
                     /locus_tag="OQQ76_004094"
                     /pseudo
     CDS             complement(951..1046)
                     /locus_tag="OQQ76_004094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1082..1387)
                     /gene="ccdB"
                     /locus_tag="OQQ76_004095"
     CDS             complement(1082..1387)
                     /gene="ccdB"
                     /locus_tag="OQQ76_004095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858358.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin CcdB"
                     /protein_id="HCS1970358.1"
                     /translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
                     KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
     gene            complement(1389..1607)
                     /gene="ccdA"
                     /locus_tag="OQQ76_004096"
     CDS             complement(1389..1607)
                     /gene="ccdA"
                     /locus_tag="OQQ76_004096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin CcdA"
                     /protein_id="HCS1970359.1"
                     /translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
                     QAENQQGMAEIARFIEMNGSFADENRDW"
BASE COUNT          567 a          441 c          487 g          623 t
ORIGIN      
        1 gaagaggtta atctttgcag ggcttgcaga gcatgggatg ataatgggtt atcactaata
       61 tgtattgaac attcattcct cagattaaga atgctttccg ggatatgact tatctgattt
      121 ctatcaaaaa aatactctct gacaacggga ttatttccct cagaaaatgc tggtagctca
      181 gtgaggaaat tacgggtcgc tctgagattt ttaagagcct gtgggagcga tggtaaggag
      241 actatttcgt tatagctgat attcatagtc aataacgaat cgggtaaagc tggcaggttt
      301 tccagctcat tgtgttgtac ctgaagtgac tccagcgcag gaggtagcac gggcaattct
      361 gataatttat tgctggcgga atataatttt tttagcgtaa caggcagttc aggtaggtta
      421 gttaattgat tatatgatac attgagcagc gttatctgag ctggtaagtt gtcaggtagc
      481 gaggacagat ttaaacggtc cagtcgaagt tcatcggaat tattgataag acattcttta
      541 agtcgggaga cagcctcatc acgctcttca ccggggagcg cttgtttttc ccatttatcc
      601 catactgaaa agtaatcagc atatgtaccg gaaatagtgt tataaaaaga attttggggc
      661 aatgaaaagt tattatttat cggtaacatg atgggcatcc agttaaagcc ggtggacaaa
      721 tggctttgtt aaaagaaata agtaggagtt tttatgaagt tcattccatg aaatgaactt
      781 cagcactttt ttattataat aaggataaac aaaattggct gtaaaaaaac gatactgttt
      841 cagttaaccg tgaatggcct gtttgcaccg tattgttctt gtttttcggt tagttaaaca
      901 tcgtacttca tatttgaacg gtaagcggct cgtcagaacc gtattgatat ttactgagag
      961 gtcagatcaa ctttccaggg caacagatcg cgtacccggt ttgccggcca gtcttggata
     1021 tgctcaatga cgtaacgcag ccattttgtc aacgccacga tttttgaccc tagcctgaca
     1081 tttatattcc ccagaacatc aggttaatgg cgtttttgat gtcattttcg cggtggctga
     1141 gatcagccac ttcttccccg ataacgaaga tcggcacact ggccatatca gtggtcatca
     1201 tgcgccagct ttcatccccg acatgcacca ccgggtaaag ctcacgggag actttatctg
     1261 acagcaggcg ggcactggcc agggggatca ccatccgtcg tccgggcgtg tcaataatgt
     1321 cactctgtac atccacaaac aaacgataac gactctctct tttataggcg taaaccttaa
     1381 actgcatttc accagtccct gttctcatcg gcaaaagagc cgttcatttc aataaaacgg
     1441 gcgatctcag ccatcccctg ctgattttca gcctgccagc gttccgcacg cagacggcgg
     1501 gcctcttttt gcatggccgt atttaccagg cctgagatat tcacgtttgc ggatttaagt
     1561 aactgatagc tgtcactgtc tatagtgaca gtaatacgct gcttcatgat aagccctcaa
     1621 aaacatactt atgatatgta tatgagtata tattaatggt acaaaccatc aatatccata
     1681 aaaagtacac cattaattca ctataagttt ttaatacaat tttttctgct gcgatttttt
     1741 tatacgataa ttagcatact tataacaccg taagtaaatt acatgaaagc aggcacagcg
     1801 tgatccgatt tttctgcgta taacgatttt ccggaagtgt aatacggttg cgccccgggc
     1861 cgggcaccct tttctgttgt tgtgtacggg cccacagaga atggtaccgg aggcgggctc
     1921 agaagtactg agtcgggtga tcgcgtcagg ccgcgaagta ctgacacggg tattggtgac
     1981 tggtgatgaa gtactgcccc gggtatgatt tcaggctgat tcaggttctg attctctgtc
     2041 agtccgcgtg gttgctggcc tggctgattt cctgttgtca ggcgttcaac aaccgactgc
     2101 aggttatagc ccggttca
//
LOCUS       DAJVUN010000316         2095 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.322, whole genome shotgun sequence.
ACCESSION   DAJVUN010000316 DAJVUN010000000
VERSION     DAJVUN010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.322"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..800
                     /locus_tag="OQQ76_004097"
                     /pseudo
     CDS             1..800
                     /locus_tag="OQQ76_004097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001608690.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            915..1256
                     /locus_tag="OQQ76_004098"
                     /pseudo
     CDS             915..1256
                     /locus_tag="OQQ76_004098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000952428.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
     gene            1239..2076
                     /locus_tag="OQQ76_004099"
                     /pseudo
     CDS             1239..2076
                     /locus_tag="OQQ76_004099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000244358.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
BASE COUNT          517 a          506 c          634 g          438 t
ORIGIN      
        1 ttctgggcct tgcccgtagc agttattttt atcaccgggc tgcactgaaa gccggtgata
       61 aatacgccac gatacgtaag atgctgacag atatctttaa cagtaattac cagtgttatg
      121 gctatcgtcg cctgcatgcg atgctcaggc atgagggggg gcggctatca gaaaaggttg
      181 tacgcagact tatggtggag gaacagcttg tcgtcagtcg taaccgtcgt cgttgctaca
      241 gctcatattg cggagaaatc ggaccggctc cggataacct tatcgccaga gattttaagg
      301 cggagcaacc taatcagaaa tagctgacag atatcacgga gttccagctc cctgcaggta
      361 aagtctggct gtcaccagtg gtggactgct tcgatggaaa agttgtgagc tggtctctca
      421 gtacacgccc tgatgctgaa ctggtcaaca ctatgctgga tagcgctgtc gaaacgttaa
      481 atgctggcga acgaccggtg atacacagtg acagaggtgg gcattatcgc tggccaggct
      541 ggctggaaag agtgaatgca gcaggtctta ttcgctcaat gtcccgtaaa ggatgttcac
      601 ctgataatgc tgcatgcgaa ggctttttcg gcagactgaa aacggaaatg tattatgggc
      661 gtaaatggtc gggcatcacg ccagaaaagt tcatgcagca agtggatgct tacatcagat
      721 ggtataacga gcggcgtata aaattatcgc tgggtgccgt cagccccaaa atgtaccgcc
      781 aacaatgcgg gctggaatga taaagcagtc caggaaatcg tccgcatccc cccttcacca
      841 tttggattgt ccgctccacc caacatgttg tttccttaag gttcctacac cacaaaggaa
      901 actctcatgc tgcgcagtgg atggctgacg ttgccgacag gcgggaactt cgccagttca
      961 ggcagacacc ggaacagcgc ttcacgcagg aacaggagca tctgcagccg ctgctgggta
     1021 cggacttcga tatccgtcat gtctcctggg atggctatat cgaggttggc gggaaccgtt
     1081 acagtgtgcc ggaaagcctg tgtggtcagc tggtatcaat acggatctcg ctggatgatg
     1141 aactgcggat ctacagtaat gagcaacagg tagcatcgca ccgtctctgt tcggctgcat
     1201 acggctggca gaccgtgccg gagcgtcacg ctccactctg gcagcaggct tcggagcgca
     1261 tggccgaacg gctgggggag atacagaaac gggtaatcac tgtctgtgac cgggaagcgg
     1321 atatctggca ttacctgtat tataaagtca gccacggaca gcgtggtgcg tgctgcacag
     1381 aatcgccggc tggaagaggc acccggcaag ctcttcgaac tgccggaagt cctggcaacc
     1441 gcaggaagcc acacgctgaa tgtgatgcaa aaaggcgggc gggcagcccg tcaggcccgg
     1501 atgttcatca gttacagcga agtcagcata aaaaatcccg acaacagcgg ccaggcgctc
     1561 ccgctcacgt atgtctgttg ccgggagcag gcagaggacg gtgcctgctg gcatctgctg
     1621 acgtcaggaa aagcggcgag tgccgccgat gcacgacgta ttgtcagcca ttacgagcga
     1681 cgctggctga cagaggaata ccacaaggcg tggaaaagtg gtggtacatg gaatcgctgc
     1741 gaatgcagac ccgggataac cttgagcgca tggtggttat ccaggcgttt atagcggtac
     1801 gggtgctggg cctgcggcag ggaggtgtca gtgaagaaac acaaaatgac agctgtgaga
     1861 aaatactgac gccgacagag tggaaactac agtgggttaa gctggaagga aagccgcttc
     1921 cggtgcaggc accgaccctg aaatgggcct ggggcgatgg catgacagca aacgcacagg
     1981 tcgtcccggt tggggcgtca tgtgggatgg ctggtcagac ttcaggatat ggttgagggt
     2041 tacctggtga tgaagtctct tgatcaggag ctctgatcaa gagacagcag ctttg
//
LOCUS       DAJVUN010000317         2089 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.323, whole genome shotgun sequence.
ACCESSION   DAJVUN010000317 DAJVUN010000000
VERSION     DAJVUN010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.323"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..125
                     /locus_tag="OQQ76_004100"
     CDS             <1..125
                     /locus_tag="OQQ76_004100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970360.1"
                     /translation="CFGRLKEYRRIATRYDKTARNYLAMVKLGCIRLFYQRLRN"
     gene            complement(274..1728)
                     /gene="ospC2"
                     /locus_tag="OQQ76_004101"
     CDS             complement(274..1728)
                     /gene="ospC2"
                     /locus_tag="OQQ76_004101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC2"
                     /protein_id="HCS1970361.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
                     FNFTKQDVAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFINNGLVDVNKRFQKAN
                     SGDTMLDNAMKSKDSKTIDFLLKNGAVSGKRFGR"
BASE COUNT          657 a          369 c          346 g          717 t
ORIGIN      
        1 ggtgctttgg gcggctgaaa gaatatcgcc gcatcgccac gcgttacgac aaaacggcga
       61 gaaattacct ggcgatggtg aaactgggct gcatccgact cttttatcaa cgcttacgta
      121 attaagggac acagcctagt ctccaggatt cccggggcgt tcaccacatg caatgtgttg
      181 ttgcaggaga acggtctgca ccatccccta tatcgatcaa tataacaaaa atgacaacgt
      241 cagattcagg gcacaaccta aatatatttt aggtcacctc ccaaatcgtt tgcctgatac
      301 cgctccattt tttaataaaa aatcaattgt ttttgaatct ttgcttttca ttgcattgtc
      361 aagcatagtg tccccactat ttgctttttg aaatcttttg tttacatcaa ccaatccatt
      421 attaataaaa tattctagca ctttatagtt ggcactatct tcactaagta aatactcaac
      481 atcatacagc tcacaataca tattgttgtt cattttctcc atctctgcga catcttgttt
      541 tgtaaaatta aatttagata gtaaataaag tgccatatca gattttgcat tgcctagaga
      601 ataagcaaga gcttgatgag ccattttttt atcagtcacc ttattgttaa tttcttcata
      661 attggatgct ttaatggcat cctccaaaga tatatctctg agttttatct ttttgaagtt
      721 atctgtgctt agcattcttg gtatatgata ctcaagctga aacacaaagt ttataattct
      781 atccagacta acaggatcaa tgtttttatt ataacaaaac tctcggaatc tttgatcttt
      841 actctttctt ataaaatcaa taagatgcaa cccaattcca agcctcatat ctttagtatt
      901 aaatattggc acatcagttt ttccctgatt accatgcaca tacctgctaa cttcatccac
      961 aacctcttta aagttatcta agaaaaatga ttggtgctca tggtaaaaaa caggtggaat
     1021 agcattatca aagtggtcgg ttaatgtcat atatccatat ggagagtcat gatcaatgat
     1081 atacgcatta gcaccaaaat ccacagtatg atgtgtttta tttagtggga gtgtttcttg
     1141 atgattggaa atttcaaccc caaaaaaaac aaaatcgtgg ttagctattt cttcaatatc
     1201 ctcagagaat gtgtttttat atgtttgtat attctcagac ttaattttat caaaggactt
     1261 aatattaaga gtattatttg acaggttagc gttactttga tgtctgaagt taaaatcaga
     1321 attaataata atagagagca agtgacgttc atccgaagaa agaggatgag ttttttgtat
     1381 tatttcagaa agatagtgtc tggacacctt atcgaggtgc tcaagtgacc gaaatgatga
     1441 ccgtgctcca gatggcgctt caatagaaag atttaatgat ttgaaactgg tcccttgaga
     1501 gaacatttta ctataacttt gcgctgctat agacttcctt aaaaagcttt tcacagtatc
     1561 agcacagtga tctaaatgtt tttcacttat gccagaagag gatgagtttg ttacgcatga
     1621 tatgtttttt tgtaatgctt ttgtatcttt gttcggattt atttttccat caacaagatc
     1681 aatattgttc tgaacattaa tatgatttac tgcttcaggt attttcataa aacatccccc
     1741 attatgtgcg tttttatctg cagttattta gaataatatt atctaactta atattttctt
     1801 gtatgtatta taacgaacat attttaatat gttgtacgat tttcactctg aaatcccctg
     1861 agtttaatca cacttccttt actgaaagga attattgcaa cagtattatt tgtttttgga
     1921 tatatatctt gcgccttgtt atgtagttaa tgctcagaat atgatagata aaatagagac
     1981 gcagaacagg gcatgctcat aacatgatga taacataaaa aattagtaac aataaatgaa
     2041 agaatcatgg gcgctcaaca aaaagagagc taaatagctg cgcggaata
//
LOCUS       DAJVUN010000318         2088 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.324, whole genome shotgun sequence.
ACCESSION   DAJVUN010000318 DAJVUN010000000
VERSION     DAJVUN010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.324"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(60..1025)
                     /locus_tag="OQQ76_004102"
     CDS             complement(60..1025)
                     /locus_tag="OQQ76_004102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="HCS1970362.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRM
                     ASCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIV
                     VDYPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRG
                     KDGSAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGE
                     VVANVAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQL
                     DRETNEDLAIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
     gene            complement(1878..>2088)
                     /locus_tag="OQQ76_004103"
     CDS             complement(1878..>2088)
                     /locus_tag="OQQ76_004103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970363.1"
                     /translation="RSEAVIPDRFKNLILLIDGLSFGTFGFHPHEGFEDELILYIQKT
                     NERVKTLFVKIDLNGIKFGFLRTHS"
BASE COUNT          575 a          549 c          438 g          526 t
ORIGIN      
        1 aaaaaaaata aaccaatagt cttatttcca ttcaggtatt caatattaat attcatacgt
       61 taatccgatt tatccttctc aggggcgcgt ttgtaacgcc gtttacctga atcccagaca
      121 aacgccgtcc gcttcccgtc atcagtgcca tcccctacat cgtcggcaat ggcaagatcc
      181 tcattggttt ctcgatccaa ctggaggacg ttttttagcg ctccaccggt cgagataaaa
      241 cggcgcttgt gaagctgccg cgtcagctca agaaaccact caggatcgtt tgccatatct
      301 tccggtttaa cggagtattt cagcgtttca gcaaccgcgc tttgcagttg ctcggcaacg
      361 ttggccacaa cctcacctgt cttagttttt actgcccgaa tatcgatatt cggctcatag
      421 ttcacccgca agcaatcgcg ccagagttct acccaacgtt cgtgcttaac gtagttcttc
      481 cctttaaacc aagaaggttg caccatcagc agacagtgaa aatgcggatg tgcgctgcca
      541 tccttacctc gcgtcacctc cgtagccctg atccacccct gaacaggtga tagctccttt
      601 cgcttttcca ttcgcttaaa cgccgcattc attgctgtaa ggactgttcc aagttcacct
      661 atctcgcagt tcctgacagt taacgtcaga aacaaccatc gggaagacgg gtaatccaca
      721 acgattttcg gtagagcctg ataaaaacgg gcttgccaca tgagggttct tctccactgg
      781 cagacagggc aatgacggac acggcaaaat tgcgcactac gaagccgtag gcgcgtttct
      841 ccggtttcca tgatggtaga ccaaccaaaa cgtaacaaac cgctacagga ggccatacgg
      901 agtgcatagc gctcgaattc agcagcagtc tggtagatac ccccgacaga atcggtaagc
      961 gtgcgctggg tatcccaaac tgcatcacgg gggctgtagt ccgaaaggaa tttatcttct
     1021 gacattaagc ctgctccgat ctgggcaggc tgtgatttga tgtggtatat tcatcacgta
     1081 cctgtgcatt gcgagccagt acatgtcacc agagtttgcc gctgaggtga cacattcgaa
     1141 atgttgggga gtgttgacgc actccccaac gccgattaaa aacgcctcaa ttctgctcca
     1201 ttttctttga cctgtcaaaa cccactcaaa gcctcgtcat tactgggcta aaccactatt
     1261 tcatacccgc catttatccc ttaagtataa atacaaggat cacgcgcgag aattgcgcaa
     1321 aaaataacca caattttaac cccccaaaac aagcaccccg aacggcttac cccaaccttt
     1381 tccacacacc cgatcaccaa aacaggggat aaaaacaaaa ccctgtctta caggtggatg
     1441 gcctcacttc gtgaaaccat ccaccccgca taagtttttt aatcggtggt gtcgtcaatc
     1501 actaaatcgg aaccccaaag gggaccccca cgatttagca tttgacgaga ttaactctcg
     1561 gagatggcat catgctttta acggacttta aaaaacggtg aacggatgcg gattttaatc
     1621 cgtgtctgtg aggcgttgag caacgagcaa agcgaggcgg tagaaagaga gccagcggca
     1681 ggctcaggac gataatccgg ggaaaatgta ccactcgcag agtgttaaca tttgacatcg
     1741 gattgtctat cctgcattgg tgtcgagttg gcaaggctga ggataatgct gaggataatg
     1801 caggatagac agagcactag agattgcatg caatctcgta cctatcacct cagcctgccg
     1861 ctggctcttt tccagaacta agaatgcgtt cttaaaaatc caaacttgat accgtttaaa
     1921 tctattttca caaaaagagt ttttaccctc tcgtttgttt tctgaatata taaaattaat
     1981 tcatcctcaa aaccttcgtg cggatgaaaa ccaaatgtgc caaaacttaa tccatcaata
     2041 agcaaaataa ggtttttaaa cctgtcagga atcaccgctt cacttctt
//
LOCUS       DAJVUN010000319         2045 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.325, whole genome shotgun sequence.
ACCESSION   DAJVUN010000319 DAJVUN010000000
VERSION     DAJVUN010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.325"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(52..525)
                     /locus_tag="OQQ76_004104"
                     /pseudo
     CDS             complement(52..525)
                     /locus_tag="OQQ76_004104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308364.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            774..1643
                     /locus_tag="OQQ76_004105"
     CDS             774..1643
                     /locus_tag="OQQ76_004105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308365.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HCS1970364.1"
                     /translation="MEFSVLSNNLKMPMMGFGVFQVTDKNVCKQSVLNAIRTGYRLID
                     TAAVYGNEDAVGEAVREAISEGLCTRDELFITSKLWVQDMLNQDTAAAGIEASLKKSG
                     LEYFDLYLLHQAMRDYFSAWRALEDAYEEGKLKAIGVSNFYPHVLANFCETVRVKPMV
                     NQVELHPYFAQPEALATMKYYNVQPEAWAPLGGGRHKPFENNLLQSIADAHQKSISQV
                     ILRWNIQRGVVVIPKSTHQQRIEENFAIWDFSLTEKEMAQISSLDLGYVGESVKHFNP
                     EFVRGCLAVKIHD"
     gene            complement(1803..>2045)
                     /gene="rclC"
                     /locus_tag="OQQ76_004106"
     CDS             complement(1803..>2045)
                     /gene="rclC"
                     /locus_tag="OQQ76_004106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reactive chlorine species resistance protein
                     RclC"
                     /protein_id="HCS1970365.1"
                     /translation="SLMAFTTPLVTLSFLITTPEAWVPALGDAHYGFPYLSGAGRLVL
                     KDTLMLAGAVMIMADSAREILKQRSNESSSTLKTEY"
BASE COUNT          594 a          407 c          472 g          572 t
ORIGIN      
        1 gcaagcacct taaaatcacc atcatacact aaatcagtaa gttggcagca ttacctcttc
       61 atccggtgat ttattcgaca cttcaatgtc atatttaaat gagttgccaa aaataggtgt
      121 ctcaggaaaa ttgactaatc tacactccgt cttttgctgt tgacgtatta aaaaagaagg
      181 gaagatattt gcgagatccc aataatcacg gtggcggtat tcacggggag agcagccgaa
      241 taacttttta aattcgcggc tgaatgactg ctgtgaatca aaatgcaaag agagtgcaat
      301 atcaagcata gatttcgcgg tgagccggac aagaatggcg gcacggcaaa gccttcgttt
      361 gcgaatgtat tctcccaaag gcacatgcat gaaatttcgg aacagaagct ggatgttgcg
      421 tctgctgtag ccagatttct gtgcgatatc ttcgattgaa atagggtgct caagattgca
      481 ctcaatccac tccaggagct gctgtagaat cttctgcctg atcatcacat tctccgttaa
      541 ttctttgtca tatcgcacat tttcgttatg ccctgggccc taagtgtatc aaaaacagca
      601 agggcgaagg caaaagcact ggtagcgcct gcttcgttgt ccccgaaaat agagaggttt
      661 cagtcctgca ttattaatga attttttgca taagtgatat caaaatccac gtactaattt
      721 gaggttacgt tttaacgtag actcattgtt catgcctaat ggagggactg acagtggaat
      781 tttccgtatt aagtaacaat ctgaaaatgc cgatgatggg atttggtgtt tttcaggtta
      841 ccgataaaaa cgtgtgcaaa cagtcagtgt tgaacgctat ccgcacaggt tatcgactca
      901 tcgacactgc agcggtatac ggtaatgaag atgccgtcgg tgaagccgtt cgtgaagcta
      961 tatctgaagg tttatgtacc cgagatgagt tatttataac gtctaaattg tgggtgcagg
     1021 atatgttgaa tcaggatacg gcagcagcag gtattgaagc atcattaaaa aaatcgggac
     1081 tagagtactt cgacctctat ttattgcacc aggctatgcg cgattatttc agtgcgtggc
     1141 gtgcactcga agatgcctat gaagagggca aattaaaagc aattggggtt tccaatttct
     1201 atcctcatgt tctggcgaac ttttgtgaaa cggtaagagt taaaccgatg gtcaaccagg
     1261 tcgagttgca tccctatttt gcccaaccag aggcgctggc aaccatgaag tattataacg
     1321 tgcagcctga agcatgggct ccgttaggtg gtggacgaca taaacccttt gaaaataatc
     1381 tgcttcagag tattgcagat gcccatcaaa aatcgatttc tcaagtcatt ctgcgttgga
     1441 atattcaacg gggagtggtc gttattccga aatcgacaca tcaacagcgt atcgaagaaa
     1501 attttgctat ctgggatttc tcactgacag agaaagaaat ggcacaaatt agttcgcttg
     1561 atttgggtta tgttggggag tcggtaaaac attttaatcc tgaatttgtt cgtggttgtc
     1621 ttgctgtaaa aatacatgat tgatattaat catatatttt acctgagacg acaagaatct
     1681 tttaacaggg gagtgatatt gatcttcact ctgtcatatc tccggtaata tggcgtcagg
     1741 cttcatcatc agaaaggggg cctgacgcct gaaaaagtga acaacagaca gtgttcggat
     1801 tatcaatatt cagtttttaa cgttgaactg gattcattac tgcgttgttt aagaatttcc
     1861 cgcgccgaat ctgccattat catgacagca ccagccagca tcagagtatc tttcaatacc
     1921 aagcgaccag caccggataa ataagggaaa ccataatgag cgtcacccaa tgcgggtacc
     1981 catgcctccg gggtggtgat taaaaatgag agtgttacca gcggcgtggt aaatgccatc
     2041 agtga
//
LOCUS       DAJVUN010000320         2044 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.326, whole genome shotgun sequence.
ACCESSION   DAJVUN010000320 DAJVUN010000000
VERSION     DAJVUN010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.326"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..420
                     /locus_tag="OQQ76_004107"
                     /pseudo
     CDS             1..420
                     /locus_tag="OQQ76_004107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310296.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
     gene            433..807
                     /locus_tag="OQQ76_004108"
     CDS             433..807
                     /locus_tag="OQQ76_004108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HCS1970366.1"
                     /translation="MLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQ
                     RLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQ
                     PVSGGRMGVKIYPIMHEEQVKK"
     gene            804..1624
                     /locus_tag="OQQ76_004109"
                     /pseudo
     CDS             804..1624
                     /locus_tag="OQQ76_004109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309551.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
     gene            1764..>2044
                     /locus_tag="OQQ76_004110"
     CDS             1764..>2044
                     /locus_tag="OQQ76_004110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970367.1"
                     /translation="MAVNTCLSACWLFRQELLVCHVNRKREKDMLKQQDMTETARVVF
                     NELSVTEPATVGEIAQNTYLSRERCQLILTQLVMAGLADYQFGCYRRLP"
BASE COUNT          516 a          437 c          595 g          496 t
ORIGIN      
        1 aagcctgttg tgccgtctgt cacccgggaa agtgaccttg tgccttcggt tcctgccacc
       61 agcatcatcc aggataaggc gaaaaaggtg ctggcgctga aagtggatcc ggagtcgccg
      121 gagtctttta tgttacgccc aaaacgtcgc cgctgggtta acgagaaata cacacgctgg
      181 gtgaagacac agccgtgtgc gtgttgtggt aagccagccg acgatcccca tcacctgatt
      241 ggtcatggtc agggctgaat ggggacaaaa tctcacgata ttttcacgct accgctgtgt
      301 cgggagcatc acaacgagct tcatgcggat cctctggcgt tcgaagaaaa gcatggttct
      361 caggttgatt taatttttcg ttttcttgat cacgcctttg caactggcgt gcttgggtaa
      421 aagaggtgac tgatgctcat agatttggtt ttaccttacc cgccgacggt gaacacttac
      481 tggcgacgcc gtggcagcac atattttatc tcggaggagg gaaagcgtta tcgccgggct
      541 gtggcgctta ttgttcgcca gcagcggctg aaattaagcc tgtccggaag gctggcgata
      601 aaggtgattg cagagccacc ggataagcgt cgtcgcgacc tggacaatat cctgaaagca
      661 ccgctggatg cgctgacgca tgcgggagtg ttaatggacg atgagcagtt tgatgaaatc
      721 aatatcgttc gtggtcagcc agtatctggt ggacgtatgg gggtgaagat ttaccccata
      781 atgcatgaag agcaggtcaa aaaatgaaac tggaagattt accgaaatac tactccccaa
      841 aatcccctag cctgaccgat gcatcggcct caacgtcaaa agatgcgctg agtatcactg
      901 atgtgatggc cgcgcagggc atgacacaga atcgggctga gatggggttt tctgcgttcc
      961 tggggaaaat gggcatcagt atgaatgaca gggcgcgggc aacagaatta ctggcagatt
     1021 atgcactcag tcggtgcgat cgtgtggcgg cgttgagaaa acttccggca gaaataaaac
     1081 cggtagtgat gcgcattatg gcttcgtatg cgtttgaaga ttatgcccgt agcgcggcga
     1141 gcaaaaaaca gtgcccctgc tgtcacggaa aaaatttatt gaaagcgagg tttttacaaa
     1201 caagatccag tatccggatg gtaagccacc agtgtgggca aagtgcacaa aaggcgtgta
     1261 tccgtcttac tgggaagaat ggaaaaaagt cagggaggtg gtaaaagttg cctgtccgga
     1321 gtgtggcgga aagggtgagg tttccaccgc ctgtaaggat tgccgtgggc gtggtgtcgc
     1381 cattcatcgt gaagagtcgg taaaacgtgg tatgcctgtt atcagagact gccagcgttg
     1441 tggtggtcgt ggctgtgaaa gactaccatc aacggaggca tttaatgcca tatgcaaagt
     1501 gacgagtgct atcacgcttg atacgtggaa aaaatcagtg aaacgctttt acgatacgtt
     1561 ggtggttcgg tttgacattg aagaggcatg ggcggagcgg cagttaaaga gggtaacgcg
     1621 atagtgttgt tgatttttcc cgaatctgtg gtaaatttgc tctaatgatg ggcgttttat
     1681 gcctgacgtt agaagatttt ttacaccccg ccgcctggcg ggttttttat gactgaaatc
     1741 gcgtcagtac agtaaacgcg ctggtggcgg tgaatacctg tctttcagct tgctggcttt
     1801 ttcgacaaga gttattggtg tgtcacgtta accggaaaag ggaaaaagac atgctaaaac
     1861 agcaggatat gacagaaacc gccagagtgg tgtttaatga attaagcgtt accgaaccgg
     1921 cgacagtcgg ggagatagcg cagaatactt acctttcacg cgaacgctgc cagttaatac
     1981 tgacccagct ggttatggcg ggtctggcag actatcagtt cggttgttac agacgccttc
     2041 cgca
//
LOCUS       DAJVUN010000321         1968 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.327, whole genome shotgun sequence.
ACCESSION   DAJVUN010000321 DAJVUN010000000
VERSION     DAJVUN010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.327"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..592
                     /locus_tag="OQQ76_004111"
     CDS             <1..592
                     /locus_tag="OQQ76_004111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HCS1970368.1"
                     /translation="FFCNELNEKGEPVTWQGRKYEAYPIDGSGFEMNGRGSSARPSLT
                     VSNLFGLVTGMAEDLQSLVGATVVRRRVYARFLDAVNFVAGNPEADPEQELSDRWVVE
                     QMSQLTAMTASFVLATPTETDGALFPGRIMLANTCMWTYRSDECGYTGGAVADEFDKP
                     TTDIRKDRCSKCMRGCELRRNVGNFGGFLSINKLSQ"
     gene            603..1208
                     /locus_tag="OQQ76_004112"
                     /pseudo
     CDS             603..1208
                     /locus_tag="OQQ76_004112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310973.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
     gene            1162..1833
                     /locus_tag="OQQ76_004113"
     CDS             1162..1833
                     /locus_tag="OQQ76_004113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001188718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HCS1970369.1"
                     /translation="MPPFTAATVSCFTICLHGDLQRFGRRLSLYVNTAAEAIRALSMQ
                     MPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHEQLGEGTVIHIVPRLAGAGKGGLQIV
                     LGAAAIVGSFFTAGASMALWGSALAAGGFSATTMLFSLGASMILGGVAQMLAPKAKTP
                     DYRATDNGRQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGKVVV
                     IGRQG"
BASE COUNT          400 a          496 c          650 g          422 t
ORIGIN      
        1 ttttttctgt aatgagctga atgaaaaagg ggagccggtc acctggcagg ggcgtaagta
       61 tgaggcatac ccgattgacg gcagcggctt tgagatgaac ggccggggca gcagtgccag
      121 accgtcgctg acggtgtcca atctgttcgg tctggtcacc gggatggcgg aagacctgca
      181 gagtctggtg ggggccacgg tggtccgccg ccgggtgtat gcccgttttc tggatgcggt
      241 gaatttcgtt gcgggcaatc cggaggcgga cccggagcag gagctgagtg accgctgggt
      301 ggtggagcag atgtcgcagc tgacagccat gacggcctcg tttgtgctgg ctacaccgac
      361 cgagacggac ggggcgctgt ttcccggtcg tatcatgctg gcgaacacct gtatgtggac
      421 ctaccgctct gatgagtgtg gttacacggg cggggctgtg gcggatgagt tcgataaacc
      481 caccacggat atccgtaagg acagatgcag caagtgcatg cgcgggtgtg aactgcgcag
      541 gaatgtcggc aattttggcg gtttcctttc cattaataaa ctttcgcagt aaatcccggt
      601 ttatgacaca gactgaatca gcgattctgg cgcatgcccg gcggtgtgcg cctgcggagt
      661 cgtgcggctt cgtgataagc acgccggagg gggagcggta tatcccttgt gtgaatattt
      721 ctgcagagcc ggaggcgtat tttcgtatcg caccggaaga ctggctgcgg gcagagatgc
      781 agggggagat tgtggcactg gtccacagtc atcccggtga gctgccctgg ctgagcgagg
      841 ctgaccggcg gctgcagata aaaagcgcac tgccctggtg gctggtctgc cggggggaaa
      901 ttcataaatt ccgctgtgtg ccacatctga caggacggcg ctttgagcac ggggtgacgg
      961 actgttacac gctgttccgg gatgcatacc atctggcggg aattgatatg ccggattttc
     1021 atcgcgagga tgactggtgg cgcaacggcc agaacctgta cctggacaat atggcggtca
     1081 ccggctttta ccgggtgccc ctgtcctctg cacagccggg cgatattctg ctgtgctgct
     1141 ttggtgcttc ggtaccgaac catgccacca tttactgcgg caacggtgag ctgcttcacc
     1201 atctgccttc acggggattt gcaacgattt ggccgccgcc tcagcctgta tgtgaacacg
     1261 gcagcggaag ccattcgcgc cctgtcgatg cagatgccgg gctttcgccg tcagatgaac
     1321 gaaggctggt accagatacg tattgccggt gatgacacgg caccggaggc ggtgtatgcc
     1381 cgtcttcacg aacagctggg tgagggaacg gtcatccaca ttgtgccgcg actggccggg
     1441 gccggaaagg gtggactgca gattgtgttg ggggcggcag ccatcgtggg ctctttcttc
     1501 actgccgggg catcaatggc gttatggggt tcagccctgg cagccggtgg tttttctgcc
     1561 accacgatgc tgttttcact tggagccagc atgattctgg gcggtgtggc ccagatgctg
     1621 gccccgaagg caaaaacacc ggattaccgc gcaacggata acggcagaca gaacacgtac
     1681 ttttcctcgc tggataacat gattgcccag gggaacccga tgccggtgcc ttacggggaa
     1741 atgctggttg gctcccgccg tatatcccag gacatcagca cccgtgatga aggcgggggc
     1801 ggaaaggtcg tggttatcgg gcgacaggga taaaacataa aaaaatcccg cagtgatcgc
     1861 ggagctgcgg ggacagacaa atgaagatca atgtgaagga gttgtttttg ttactcgggc
     1921 aaaaaaacac taacgcagcg aaattataag cgccacagtc agtgtgtg
//
LOCUS       DAJVUN010000322         1947 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.328, whole genome shotgun sequence.
ACCESSION   DAJVUN010000322 DAJVUN010000000
VERSION     DAJVUN010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1947
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.328"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            80..976
                     /locus_tag="OQQ76_004114"
     CDS             80..976
                     /locus_tag="OQQ76_004114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HCS1970370.1"
                     /translation="MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEE
                     QIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNT
                     YPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
                     LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGIN
                     PTIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSI
                     RNHRYTATMLQHIAEDRDGTNH"
     gene            complement(973..>1947)
                     /gene="scpC"
                     /locus_tag="OQQ76_004115"
     CDS             complement(973..>1947)
                     /gene="scpC"
                     /locus_tag="OQQ76_004115"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA:succinate CoA transferase"
                     /protein_id="HCS1970371.1"
                     /translation="VAELADIVIPGAPPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVV
                     ETNLPDAGNMLDKQNPMCQQIADNVVTFLLQEMAHGRIPPEFLPLQSGVGNINNAVMA
                     RLGENPEIPPFMMYSEVLQESVVHLLETDKISGASASSLTISADSLRKIYDNMDYFAS
                     RIVLRPQEISNNPEIIRRLGVIALNVGLEFDIYGHANSTHVAGVDLMNGIGGSGDFER
                     NAYLSIFMAPSIAKEGKISTVVPMCSHVDHSEHSVKVIITEQGIADLRGLSPLQRART
                     IIDNCAHPMYRDYLHRYLENAPGGHIHHDLSHVFDLHRNLIATGSMLG"
BASE COUNT          506 a          472 c          480 g          489 t
ORIGIN      
        1 ggacgactgg gggcagtaat catgccgggt ctggctggct aacaccccat tataaggggt
       61 acgaataaag taacggggga tggacatttt tatttcgaaa aagatgcgca atttcatttt
      121 attagcgcaa accaataata ttgcccgggc ggcagaaaaa atccatatga cggcttcgcc
      181 atttggtaaa agcattgccg cgctggaaga acaaattggc tatacgctat ttacccgcaa
      241 agataataat atcagcctca ataaagccgg tcaggaactg tatcaaaaac tgttcccggt
      301 ttatcaacga ctttctgcga ttgataatga aatccataac tcagggcgtc gttcacgaga
      361 aattgtgatt ggcatagata atacttatcc gacaattatt ttcgatcagt tgattagtct
      421 cggagataag tatgaaggcg tgaccgccca gccagttgag ttcagcgaaa acggcgttat
      481 cgataatctt tttgaccgtc agttagattt tattatctcc ccacagcatg tatctgcacg
      541 agttcaggaa ctggaaaacc tgactatcag tgaattacca ccgctgcgat tgggctttct
      601 cgtttctcgc cgttatgaag agcgtcaaga gcaagagctg cttcaggagc tgccctggct
      661 acaaatgcgc tttcaaaacc gggctaactt cgaagcaatg attgatgcga atatgcgacc
      721 ttgtgggatc aatcccacca ttatttatcg tccctacagt tttatggcca aaatcagcgc
      781 cgtggagcgc ggacattttc tgacggtgat cccgcatttt gcctggcgac tggtgaatcc
      841 ggcaacgctg aaatattttg atgcgccgca caggccgatg tatatgcagg aatatcttta
      901 ttcaatcaga aatcatcgtt ataccgccac gatgcttcag catattgctg aagatcgtga
      961 cgggacaaac cattaaccca gcatcgagcc ggttgcaatt aaattacggt gtaagtcgaa
     1021 gacgtggcta agatcgtggt gaatatgtcc gccgggcgca ttttccagat agcgatgcag
     1081 ataatcccga tacataggat gtgcacaatt atcaatgata gtgcgggcgc gttgaagcgg
     1141 ggaaagaccg cgcagatcgg cgatcccttg ttcggtgatg atcactttga cgctgtgttc
     1201 gctgtgatca acatggctgc acattggcac gacggttgag atcttgcctt ctttagcaat
     1261 cgacggagcc ataaagatcg acagatacgc gttgcgttca aaatcaccgc tgccgccgat
     1321 gccgttcatc agatcgaccc cggctacgtg cgttgaattt gcatgcccgt aaatatcaaa
     1381 ctctaggccg acgttcagag cgatgacgcc cagacgacgg atgatttccg ggttattgga
     1441 aatctcctgc ggacgcaaca caatgcggct ggcaaagtaa tccatattgt cgtaaatctt
     1501 gcgcagggaa tcggccgaga ttgtcaggct ggaggcgctg gccccgctga ttttgtcggt
     1561 ttccagtaaa tgcaccaccg attcctgtag cacttccgaa tacatcatga acggaggaat
     1621 ttccgggttt tcccccagac gcgccattac cgcattattg atattgccca cgccactttg
     1681 cagcggcaga aattccggcg gaatacgccc atgcgccatt tcctgcaata agaacgtgac
     1741 cacgttatcg gcaatctgct ggcacatggg attttgctta tccagcatat taccggcgtc
     1801 gggcaagttg gtttccacga cggcgacaat ctttttcgga tcgatttgca catagcgggt
     1861 accgacgcga tccattgcat ggaagatcga cacgctattg cgccgcggtg gcgcgccagg
     1921 aatcacaata tctgccagtt ctgcaac
//
LOCUS       DAJVUN010000323         1873 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.329, whole genome shotgun sequence.
ACCESSION   DAJVUN010000323 DAJVUN010000000
VERSION     DAJVUN010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.329"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(26..628)
                     /locus_tag="OQQ76_004116"
     CDS             complement(26..628)
                     /locus_tag="OQQ76_004116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010340155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HCS1970372.1"
                     /translation="MNTSSWNKGRIVGQKRPLQISHIWGIRIRLELEGKTRDLALFNM
                     ALDSKLRGCDLVKLKVSDVAYGSSVSSRATVLQQKTGSPVQFEITKGTREAVTALIKL
                     GNLHSNDFLFRSRVGTNQHISTRQYNRIFHGWIAKLGLDDSLYSTHSMRRTKPYLIYK
                     KTKNLRVIQLLLGHRKLESTVRYLGIEVDDALEISESIEI"
     gene            complement(769..1131)
                     /locus_tag="OQQ76_004117"
                     /pseudo
     CDS             complement(769..1131)
                     /locus_tag="OQQ76_004117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004714530.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1200..>1873
                     /locus_tag="OQQ76_004118"
     CDS             1200..>1873
                     /locus_tag="OQQ76_004118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="HCS1970373.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDH
                     STIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTV
                     DFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDV
                     EHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYY
                     GDPLGE"
BASE COUNT          475 a          442 c          433 g          523 t
ORIGIN      
        1 ggctgctatt gcagccctga caaccttaga tttcaatcga ttcagagatc tctaacgcat
       61 catcgacttc aatgcccaga taacggactg tgctttccag tttcctatgg cctaacagaa
      121 gttggatcac cctgagattc ttagttttct tgtagataag gtaaggtttt gttcttctca
      181 tggaatgtgt gctgtaaagc gaatcgtcga gaccaagctt tgctatccac ccatgaaaaa
      241 tccggttgta ttgccgggtt gatatgtgct ggttagtacc gacccgggat cgaaacaaga
      301 agtcattact atgtaaatta ccaagtttta tcaatgcagt aacagcttct cttgtccctt
      361 tggttatctc aaattggaca gggctaccgg ttttctgctg caacaccgtt gccctgcttg
      421 aaacagagct accatatgca acatcagata ctttaagttt taccagatcg cagcctcgta
      481 gcttactgtc cagggccata ttgaacagag ccaaatcgcg cgtcttacct tccagttcaa
      541 gcctgattcg gatcccccag atatgagata tctgaagtgg tcttttttgg cctacgatac
      601 ggcctttgtt ccacgatgaa gtgttcatac tcaaatctcc tgcaatgtgg gagatttgag
      661 tatggttgtc ccttatgagc gaattgcaga cattaacgtt tggttaaggg acgggctgta
      721 gcccgtccca gtgagcgaag cttaatttag tccgtgtgca gcgctttgtt agccaaaact
      781 gatgtgattt ttagttagat ctctatatct cttatcgttg tgtactttat ggaggatcgt
      841 ttggttggcg atcaaaaaat ctataatttc ttgaattctt tcgctacgag cattggctct
      901 taacaaagtc aaaacgctta ccatatgttg ctggcagtat ttgttgtcta aattcactcg
      961 cacttcatta gagtgcattg ctataactgt attgataatg ttttgatcgc caagcatgcc
     1021 aaaaaactga tcatacaaag gtcgtcccgc cggagaaaca ccagtattat atggtattcc
     1081 tttaccaaca cgacaaatca aaactgtttt tataagctta tgaaccctct ctaaagggca
     1141 ctgttgcaaa tagtcggtgg tgataaactt atcatcccct tttgctgatg gagctgcaca
     1201 tgaacccatt caaaggccgg cattttcagc gtgacatcat tctgtgggcc gtacgctggt
     1261 actgcaaata cggcatcagt taccgtgagc tgcaggagat gctggctgaa cgcggagtga
     1321 atgtcgatca ctccacgatt taccgctggg ttcagcgtta tgcgcctgaa atggaaaaac
     1381 ggctgcgctg gtactggcgt aacccttccg atctttgccc gtggcacatg gatgaaacct
     1441 acgtgaaggt caatggccgc tgggcgtatc tgtaccgggc cgtcgacagc cggggccgca
     1501 ctgtcgattt ttatctctcc tcccgtcgta acagcaaagc tgcataccgg tttctgggta
     1561 aaatcctcaa caacgtgaag aagtggcaga tcccgcgatt catcaacacg gataaagcgc
     1621 ccgcctatgg tcgcgcgctt gctctgctca aacgcgaagg ccggtgcccg tctgacgttg
     1681 aacaccgaca gattaagtac cggaacaacg tgattgaatg cgatcatggc aaactgaaac
     1741 ggataatcgg cgccacgctg ggatttaaat ccatgaagac ggcttacgcc accatcaaag
     1801 gtattgaggt gatgcgtgca ctacgcaaag gccaggcctc agcattttat tatggtgatc
     1861 ccctgggcga aat
//
LOCUS       DAJVUN010000324         1838 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.330, whole genome shotgun sequence.
ACCESSION   DAJVUN010000324 DAJVUN010000000
VERSION     DAJVUN010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.330"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..188
                     /locus_tag="OQQ76_004119"
     CDS             <1..188
                     /locus_tag="OQQ76_004119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1327 domain-containing protein"
                     /protein_id="HCS1970374.1"
                     /translation="EAAARRSIRQVFLDVAAGLCEGDEQSPEKRPVILEAQDVLITYR
                     GKLPGIITGSLKSPPKW"
     gene            complement(154..426)
                     /locus_tag="OQQ76_004120"
     CDS             complement(154..426)
                     /locus_tag="OQQ76_004120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000369850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970375.1"
                     /translation="MDNNTISLQELLDSISRLREDVNTLTVAFSYLAFSIPREQMQST
                     LASIQFESCNPKWSQEQQDSFRRLAVLLDEKYAGKITISADSSENP"
     gene            532..1065
                     /locus_tag="OQQ76_004121"
     CDS             532..1065
                     /locus_tag="OQQ76_004121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HCS1970376.1"
                     /translation="MNAKIRYGLSAAVLALIAAGAPAPDILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDGKPVVPGMKLSKEKCDQVNAIERDKALAWVEKNIKVPLTEPQK
                     SGIASFCPYNIGPGKCFSSTFYRKLNAGDRKGACAEIRRWIYDGGRDCRNRSNNCYGQ
                     VSRRDQESALACWGIDR"
     gene            1286..1399
                     /locus_tag="OQQ76_004122"
     CDS             1286..1399
                     /locus_tag="OQQ76_004122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970377.1"
                     /translation="MKGIEVETPASLDLTRAAAFAIRIVAIAVLVWAIRWW"
     gene            1401..>1838
                     /locus_tag="OQQ76_004123"
     CDS             1401..>1838
                     /locus_tag="OQQ76_004123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HCS1970378.1"
                     /translation="MNRVLCVVIIALLVACGALSLGLNHYRVHAIIYKEQRDKKASEL
                     ELANATITDMQIRQRDVAALDARYSRELADARAENETLRADVAAGRKRLRINATCSGT
                     VREATGTSGVDNATGPRLADTAERDYFILRERLMTMQKQLEGAQ"
BASE COUNT          468 a          411 c          533 g          426 t
ORIGIN      
        1 atgaggcagc agccagaagg agcatcagac aggtcttcct ggatgttgct gccgggttat
       61 gtgaagggga tgagcagtcg ccggaaaagc gccccgtaat tttagaggcg caggatgtgt
      121 tgataaccta cagaggaaaa ctaccgggaa taattacggg ttctctgaag agtccgccga
      181 aatggtaatt ttaccagcat atttttcatc cagtaataca gcaagccgcc tgaaagagtc
      241 ttgttgttcc tgagaccatt tgggattgca tgattcaaac tggattgatg ccagcgttga
      301 ttgcatctgt tcccttggaa ttgagaatgc cagatatgag aaggcgacgg taagggtatt
      361 cacgtcttcc cgaagcctgg aaatgctgtc gagcaactcc tgtagagaaa tggtgttatt
      421 gtccataaat aatcctcatg attgtattga cctgttagca gcctgaggca acaggctgga
      481 actgataaac atatccaggg ctcagaaacc gataaatcct gataaatatc catgaacgca
      541 aaaatcagat acggcctgtc ggctgccgtt ctggcgctga ttgccgctgg tgcgcctgcg
      601 cctgacattc tcgaccagtt tctggatgaa aaggaaggta accacaccac ggcataccgt
      661 gatggcgcgg gtatctggac catctgccgc ggtgccattc tggtggatgg taaacctgtc
      721 gtcccgggca tgaagttgtc gaaggagaaa tgcgaccagg ttaacgccat tgaacgtgat
      781 aaggcgctgg catgggtgga gaaaaacatc aaagtgccgc tgaccgaacc ccagaaatcg
      841 gggatcgcgt cattctgtcc gtacaacatt ggccccggta agtgtttcag ctcaacgttt
      901 taccggaaac tgaacgccgg agaccggaaa ggtgcatgtg ctgaaattcg tcgctggata
      961 tatgacggcg gcagggactg tcggaaccgc tcaaataact gttacgggca ggtatcgcgg
     1021 cgtgaccagg agagcgcgct ggcgtgctgg ggtatcgaca ggtagcagaa tattttgctg
     1081 aaaaatgacg cttgctcacg cgggcggata acacgaagtc ctgtgaactg gcaaaaccta
     1141 agtgaataaa agtaaaaacc ccgtttgttg gcagcaagcg gggttttgtg ttttctgacc
     1201 ttgagtaagg caagggagaa attatggtga gggaggtgct ttccctgtga ggaagtataa
     1261 aagattcttt ctgaggttgt ccattatgaa aggcattgaa gtggagacgc cagccagtct
     1321 ggatttaaca agagcggcag cttttgccat tcgtattgtg gcaattgctg ttctggtctg
     1381 ggcaatccgt tggtggtgat atgaaccgtg ttttgtgcgt ggtcatcatt gccctgctgg
     1441 tggcctgtgg tgcgcttagt ctggggctga atcattaccg tgttcacgcc atcatctaca
     1501 aagagcagcg cgataaaaaa gccagtgagc tggagctggc gaacgcgaca attactgata
     1561 tgcagatacg ccagcgtgat gtcgctgcac ttgatgccag atactcgagg gaattagccg
     1621 atgcgagagc tgaaaatgaa actctgcgtg ctgatgttgc cgctggtcgt aagcgcctgc
     1681 ggatcaacgc cacctgctcc ggtaccgtgc gtgaagccac cggcacctcc ggcgtggata
     1741 atgcaaccgg cccccgactg gcagacaccg ctgaacggga ttatttcatc ctcagagaac
     1801 ggttgatgac aatgcagaag cagctggaag gggcacag
//
LOCUS       DAJVUN010000325         1765 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.331, whole genome shotgun sequence.
ACCESSION   DAJVUN010000325 DAJVUN010000000
VERSION     DAJVUN010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.331"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            114..1765
                     /locus_tag="OQQ76_004124"
                     /pseudo
     CDS             114..1765
                     /locus_tag="OQQ76_004124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015200.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT          425 a          492 c          531 g          317 t
ORIGIN      
        1 agtcaaaaaa ataatacaaa aagagagtat ttcgtttcat acagtaacgt tatttatcat
       61 tttgtccggt gccgccagca tcaggccaga tgaaccataa aaggatatca gcgatgagcg
      121 gaaaaccagc ggcacgtcag ggcgatgcca caatgaaagg tggcccgata gtccaggggt
      181 cggcaggcgt gagaattggt gcgccaaccg gcgtggcctg ctcagtgtgc cccggcggat
      241 tcacttccgg caacccggtg aatccgctgc tcggtgcaaa agtacagccc ggcgaaaccg
      301 atttcgcgct gcccggcccg ttaccgttcg tgctctcccg cacctacagc agctaccgga
      361 cgaaaacccc tgcgcccgtc ggtatcttcg gtcctggctg gaaagcaccc tttgatatcc
      421 gcttacagat acgcgataac gaactgatac tcaatgataa cggtggcaga agcattcatt
      481 ttgagcacct gtttcccggt gaggatggtt tcagccgcag cgaattattc tggctggtac
      541 gcggcggcgt ggcgaaactg aatgaaagtc accgtcttgc cccactctgg caggctctgc
      601 cggaagaact ccgcctgagt ccgcatattt atctggcgac gaacagtccg caggggccgt
      661 ggtgggtact cggctggagt gagcgggtgc cggggggggg atgaggtgct gcctgcccca
      721 ttgccgccgt accgggtgct gaccggcctg gtggaccgct tcgggcgcac gcaaaccttc
      781 caccgtgagg ccgcaggcga atttaccgga gaaatcaccg gcgtgaccga tggggcaggc
      841 cgtcagttct gcctggtgct gaccacgcag gcgcaacggg cagaaaacgc ccggcagcag
      901 gccatcgccg caggaacgaa aggatcggat atcccggatt cactgccgga ctatacggag
      961 tatggccggg ataacggtat ccgcctgtca ggggtgtggc tgacgcacga cccggaatac
     1021 ccggagaatc tgcccgccgc ccccctggta cgctacgact ggacggcacg cggtgagctg
     1081 gcggcggtgt atgaccgcag cggtactcag atgcgccact ttacttacga tgataaatac
     1141 cggggccgga tggtggcgca ccgttacgca ggcaggccgg agatgcgtta ccgctacgac
     1201 gacataggtc gcgtgacgga gcagtttaat ccggcaggct taagctacgc ctatcagtat
     1261 gagaaaaacc gtatcaccat caccgacagc ctgaaccggc gggaggtgct gcacacggaa
     1321 ggtgaagccg ggctgaaacg tgtggtgaaa aaggaattcg cggatggcag catcacccga
     1381 agtaaatttg actatatggg gcgactccag tcacagacgg atgcagcagg ccggacaaca
     1441 gaatacagtc cgaatgtggt gacgggactc gtcacgtgca tcaccacgcc ggacggcagg
     1501 aaatcggaat tttactataa caatcaaaac cagttaacct cagccaccgg gcctgacgga
     1561 ctggaaatac gccggaaata tgatgagtac gggcgtctga cgcaggaaac agcacgcaac
     1621 ggcgatgtca cccgctacag ttatgataat ccacacagtg aattaccctc tgtaacagaa
     1681 gatgcgacgg gtagccgcaa gcagatgacg tggagccgct acgggcagtt acagaccttc
     1741 accgactgct caggctatga aaccc
//
LOCUS       DAJVUN010000326         1765 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.332, whole genome shotgun sequence.
ACCESSION   DAJVUN010000326 DAJVUN010000000
VERSION     DAJVUN010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.332"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..1629)
                     /locus_tag="OQQ76_004125"
                     /pseudo
     CDS             complement(1..1629)
                     /locus_tag="OQQ76_004125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
BASE COUNT          464 a          433 c          376 g          492 t
ORIGIN      
        1 cccacaaaaa ggcaaacaga tccgaagcgg gataatcttt ttggggagaa ttgttccagt
       61 tagcaatata tcccgacagg gggttataca ccttagggtt catttcaaaa ggcaatagcc
      121 ctttccagtc ccattttccc gtaccaggaa cgggtaatcg cggatcatgg cctgattgac
      181 gatctggata agcaccagta tgaacataac caatattgcc gtttacatca gcatagtacc
      241 agttgatggt cagttcttgt ttcgctactc ctgccaattt ttggccttca tctgatgagt
      301 ccaggccagc aaagacgcca cctctttacc atcccatgcg cgggatttag cgtaagccgt
      361 ttgtgtcgtc tggtcagttt ggagaatgtt gccatgcacc gtacgccaga cagtaaaggt
      421 ctctgcctga ccatttttca ccgtaatggt ttcctcacgg cttaacattt tcacccactt
      481 acaattatgt aagtagtagc ctggtttctc tgccgacagc cgttcagcaa aaatatcgac
      541 atcatcgccg aaacctgccg ttgatcccca ggaaatcaca ccattatgac caaaaaccag
      601 cccaggatag gcaaatggtg tattgccagt gacatcataa ccagcaccgt gcagaccaat
      661 accataagta tacgcaggcg cataccagcc aaactgcgga ccatttacca tgattgcttt
      721 cgcatcctgg gctttgcttt tgccgatcac ccacatattg gtggtcgttg gataccccgc
      781 cagaccattg gcaccaccct gtgcaaattg tgcagcaata gtttcccggt tcttccctgc
      841 tgttaacgcc agcagtgcgc catccgcccc ttttgctggt cggtcaagca ttggtgcagg
      901 taaatcgtag cgtggcaaca gagctgctgt ttgcgagttt tgctgattaa atttaagtgg
      961 gtagctactc tcttgtacgg caatagtggt tggcgctgat gggtttacca gccatttcaa
     1021 ctgattaaat accgccatgc cttgtgatac accatattta tcttttaaag ccgttagcag
     1081 tgccagatta tcaatttcgc tagtgctatc agagaagcgg tttgccatgg tgcccacaaa
     1141 tatcatcgcg acatcaaacg gttcccagcg cttaggagta aagccaaatg tattaaactg
     1201 ttttggtaag agcgtctctg gattggtatt taccttatca atccaggcat tcattccatc
     1261 agcgtagcct tgcagaatgg acatatcctc tggggaaagg gcatcaattt gcgcccggat
     1321 agcatccggc cagtagttac gacggatatc tttatcaaat ttcacaaaat ctttgccaag
     1381 cacttccgcg acagtccctt gagtactgcg acgtgccatt tccatctgaa aaaggcgatc
     1441 ttgtgctact acatagccat agccataaaa taggtgccat gtatcattgg cataaatatg
     1501 cggcatgccg tattcatcgc gaacaatctt tatctcactt gacgactgct cagccagtgc
     1561 aggtaagctc caataataca tcagggaagc agtaacacag ttcacgatca tacgatttct
     1621 atttttcatt gtatcctctg gcaggtgtat aattagcgaa ttgatactag caacgaagct
     1681 tcggttatct atttgcagag aattgtttca ttatgaactg tgagcgcgat aactaatttt
     1741 tgatacaaaa atttcattaa tgtga
//
LOCUS       DAJVUN010000327         1759 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.333, whole genome shotgun sequence.
ACCESSION   DAJVUN010000327 DAJVUN010000000
VERSION     DAJVUN010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.333"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..545
                     /locus_tag="OQQ76_004126"
                     /pseudo
     CDS             1..545
                     /locus_tag="OQQ76_004126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(562..741)
                     /locus_tag="OQQ76_004127"
                     /pseudo
     CDS             complement(562..741)
                     /locus_tag="OQQ76_004127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1071..>1759
                     /gene="ipaH7.8"
                     /locus_tag="OQQ76_004128"
     CDS             1071..>1759
                     /gene="ipaH7.8"
                     /locus_tag="OQQ76_004128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH7.8"
                     /protein_id="HCS1970379.1"
                     /translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
                     GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPNHISALIVENNKLTSLPKLPAFLKEL
                     NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
                     FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
                     SFSQLDSSYRI"
BASE COUNT          542 a          386 c          318 g          513 t
ORIGIN      
        1 cggtgttaag gagcagatcg ttgaaatggc acataacggc gcagggggct gttataccgc
       61 cagaacactg aaaatcggca ttaataccgt catacggaca ttaaaaagct ctcgccccgg
      121 cggataacat ctgcgccagt cgctcacgct gatgttgccc ttatctgtga acttgatgag
      181 cagtggcgct tcgttggcag caaggcgcaa caacactggc cttggtatgc gtacaacact
      241 aaaactggcg gtgtgttggc ttacacttgc gggccacgga atgatgagac ctgtcgggaa
      301 ctgttagccc tgttgactcc gttctgtatc ggcatggtga ccagcgatga ctggggcagc
      361 tacgccagag aagtgccgga ggagaaacac ctgaccggca aaatcttcac gcaacgtatg
      421 aacgtaacaa cctgaccctc cgcccccgca tcaagcggct ggcacgtaaa acaatctgct
      481 tctcgcgttc cgtggaaatc cacgaaaaag tcatcggttc cttcattgaa aagcacatat
      541 tctaatgatt ggaagtacta cccggcaaaa ctcattcagt acattccagt gattcaggat
      601 atagttgaac gcctttacca tttcagcatg gtttgacaaa gttttcctct ggagctttat
      661 ccagtcatac aaggacttca ttcgcggcac acatttcgcc tgccttaccg caagccgttt
      721 ttctgccggc ctccctcgta ttaaatgtgt atcgtttttt tacagtaatt ttaatttatc
      781 attctataat aggaataaat gagcttggct aaaatatgat gtaaaacaaa tatacttact
      841 cggattacat ttccttgctc actggaatgt tgaattcagt gttattattg actgcagtca
      901 caataaaaaa aagaattcca tagaaaacct caataaataa attacaacta acttctgtta
      961 tgtgtaaaat ggaaactatt aaaacttaat atcggaaatg gtaagtgaaa tttgtataaa
     1021 tatacaattt taaatattta ttctcacaaa tataaggttg ccctagcatt atgttctctg
     1081 taaataatac acactcatca gtttcttgct ccccctctat taactcaaac tcaaccagta
     1141 atgaacatta tctgagaatc ctgactgaat gggaaaagaa ctcttctccc ggggaagagc
     1201 gaggcattgc ttttaacaga ctctcccagt gctttcagaa tcaagaagca gtattaaatt
     1261 tatcagacct aaatttgacg tctcttcccg aattaccaaa ccatatttct gctttgattg
     1321 tagaaaataa taaattaaca tcattgccaa agctgcctgc atttctcaaa gaacttaatg
     1381 ctgataataa caggctttct gtgataccag aacttcctga gtcattaaca actttaagtg
     1441 ttcgttctaa tcaactggaa aaccttcctg ttttgccaaa ccatttaaca tcattatttg
     1501 ttgaaaataa caggctatat aacttaccgg ctcttcccga aaaattgaaa tttttacatg
     1561 tttattataa caggctgaca acattacccg acttaccgga taaactggaa attctctgtg
     1621 ctcagcgcaa taatctggtt acttttcctc aattttctga tagaaacaat atcagacaaa
     1681 aggaatatta ttttcatttt aatcagataa ccactcttcc ggagagtttt tcacaattag
     1741 attcaagtta caggattaa
//
LOCUS       DAJVUN010000328         1742 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.334, whole genome shotgun sequence.
ACCESSION   DAJVUN010000328 DAJVUN010000000
VERSION     DAJVUN010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.334"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..1579)
                     /locus_tag="OQQ76_004129"
     CDS             complement(<1..1579)
                     /locus_tag="OQQ76_004129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase"
                     /protein_id="HCS1970380.1"
                     /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI
                     EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD
                     FDLRKFVENYFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ
                     SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY
                     LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP
                     DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD
                     TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVNRY
                     LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL
                     ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKLI
                     EKYHIADGVPREGGGGEY"
BASE COUNT          406 a          465 c          451 g          420 t
ORIGIN      
        1 gatactcgcc accgccgcct tcgcgtggaa caccatcggc aatatggtat ttttcgatca
       61 gtttgtgctg ttccagatag aactgattca ccgtcttcag ccagcttcgc gcgatttcat
      121 cacccagaag gtcatcgccg tacattttaa atccctgaat cgccatccat tgtaacggtg
      181 cccagccgtt gggtttatcc cactgttcac cggtttcgta ctcgcttgcc agaatcccgc
      241 caggtgtcag taaccgactg cgcacggcat ttgccagacg atcggcctgt tcatggttcg
      301 ccataccgac atagagtggc acaatggcgg cagcggaaaa cagcgccagt tgttcgcgtc
      361 gccagtcgta atcgcggtag atgccgtttt catcatccca gaggtaacgg tttaccgcat
      421 cgcgacgggc actggccttc tggcggaaca gtgcttctgt ctctttctcg cctttcagcg
      481 ccgagatgtt ggcgatggcg ctctccagtt taaacaggaa ggcattcaga tcgatgggga
      541 tgaactgggt ggtacgaata ctcgccagac gaccagtatc acgcagccaa cgggaagagt
      601 aatcccaacc ggaggccgcc cccgctcgta aatcgcggta cacctcgttg ggcgggcgac
      661 cagaatgttt cgcggtttca acgtcctcaa gccaggattc gtcacgcggc gtgtcgcgat
      721 cgtcccagta acggttgagc agcgatccgt ccggcatccg cacaacatgg cgataggcct
      781 gattagggat caacgattct gcaccgtcca tccagaaggc atattccatt ttcaggtggt
      841 cgagatagcg gcgcgcaccg cgtacaccat cttcttcaaa caactccacc atcagcgcaa
      901 aaaccggtgg ttgcgagcgg ctcaaataat aggtgcggtt gccgttgggg atgtgaccgt
      961 agttttcgat catccaggcg aagttatcgg ccatgcattt cagcaaatct tcccgaccac
     1021 tttccgccag ccccagcatg gtgaaatagg aatcccaata gtaggtttcg ctaaaacggc
     1081 cgcccgggac aatatatgac tgcggtagcg ccagcagaga agaccacgga atgtgatcct
     1141 gtggttcgcg ggttagcacc ggccacagct ggtcgatatg ctctttcagg gaattttgcg
     1201 ggtccgatac atactcgctg gagtagacct ccggcagcca gaagtaattt tcaacaaact
     1261 tgcgcaagtc aaaatcacga tgacggcgca ctttacggta gcggattaaa atatccagcg
     1321 ggtccatttt gggtgcgcag tcgggaaagg ttttactgtc ggggaaaatt ttcgccgact
     1381 gaacatgctc gaacagttcg agatagcgat cggcaggcgt cagcgcatca gaggcgggca
     1441 gcccttcaat catctcgggt tccggttctg cctcgatcat ctcatccagt tttaattcat
     1501 acgggtccag ttcatagcag agatcgactt cgatcatcag ttcgtctgga ttagggtttt
     1561 gaattttctg attgagcata aggatccaac ctccgaaatt cgtcgctaat tatcggcttt
     1621 tctttaaggg tagtcattcg ctccgcctgg tgggctacaa agcgtgcggt ggatcacgtt
     1681 tattaacttg tcaaaaaata taacgcacta atatcaatgg aatttataaa aatacggggt
     1741 aa
//
LOCUS       DAJVUN010000329         1711 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.335, whole genome shotgun sequence.
ACCESSION   DAJVUN010000329 DAJVUN010000000
VERSION     DAJVUN010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.335"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>1711
                     /gene="rhsB"
                     /locus_tag="OQQ76_004130"
     CDS             <1..>1711
                     /gene="rhsB"
                     /locus_tag="OQQ76_004130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhs element protein RhsB"
                     /protein_id="HCS1970381.1"
                     /translation="EHADGSVTQSQFDAVGRLRTQTDAAGRTTEYSPDVVTGLITRIT
                     TPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDIIRYRYDNPHS
                     DLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYR
                     AYDSRGQLIAVKDTQGHETRYEYNAAGDLTAVIAPDGSRNGTQYDAWGKAIRTTQGEL
                     TRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLTGKLIRSE
                     DEGLVTHWHYDEADRLTHRTVNGETAEQWQYDKRGWLTDISHLSEGHRVTVHYRYDEK
                     GRLTGERQTVHHPQPEALLWQHETRHAYNAQGLANRCIPDSLPAVEWLAYGSGYLAGM
                     KLGDTPLVDFTRDRLHRETLRRFGRYELSTAYTPAGQLQSQHLNSLQYDRDYTWNDNG
                     ELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYATDPAGNRLPDPELHPDSTL
                     SMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYT
                     RTQY"
BASE COUNT          412 a          544 c          499 g          256 t
ORIGIN      
        1 gaacacgcgg acggcagcgt cacgcagagt cagtttgacg ccgtgggcag gctcaggaca
       61 cagacggatg ccgcaggccg gacaacagaa tacagcccgg atgtggtgac gggcctcatc
      121 acgcgcatca ccacgccgga tggcagggca tcggcgtttt actataacca ccacagccag
      181 ttaacgtcag ccaccgggcc tgacgggctg gaaatacgcc gggaatatga tgaatggggc
      241 cgtctgattc aggaaactgc ccctgacggc gatatcatcc gctaccgtta tgataatcca
      301 cacagtgact taccctgcgc aacggaagat gccaccggta gccggaaaac catgacgtgg
      361 agccgttacg gtcagttgct gagcttcacc gactgttccg gttatgtaac ccgttatgac
      421 catgaccgct tcgggcagat gacggcggtg caccgcgagg aagggctgag tcagtaccgc
      481 gcatacgaca gccgtggaca gttaattgcc gtgaaagaca cgcagggcca tgaaacgcgg
      541 tatgaataca acgccgccgg tgacctgacc gccgtcattg ccccggacgg cagcagaaac
      601 gggacacagt acgatgcgtg gggaaaggcc atccgtacca cgcagggcga gctgacgcgc
      661 agtatggaat acgatgctgc aggacgggtc atccgcctga ccagtgaaaa cggcagccac
      721 accaccttcc gttacgatgt actcgaccgg ctgatacagg aaaccggctt tgacggccgc
      781 acacagcgtt atcaccacga cctgaccggc aaacttatcc gcagcgagga tgaggggctg
      841 gtcacccact ggcactatga cgaagcagac cgcctcacgc accgcaccgt gaatggcgaa
      901 accgcagagc agtggcagta tgacaaacgt ggctggctga cagacatcag ccatctcagc
      961 gaagggcacc gggtgacggt gcattacagg tatgatgaga aaggccggct gaccggtgag
     1021 cgccagacgg tgcatcaccc gcagccggaa gcactgctct ggcagcatga gaccagacac
     1081 gcttacaacg cgcagggact ggcgaaccgc tgtataccgg acagcctgcc cgccgtggaa
     1141 tggctggcct acggcagcgg ttacctggca ggcatgaagc tcggcgacac accgctggtg
     1201 gatttcaccc gcgaccgcct gcaccgggaa acgctgcgcc gcttcggccg ctatgaactc
     1261 tccaccgctt acacccctgc cgggcagtta cagagccagc acctgaacag cctgcagtat
     1321 gaccgcgatt acacctggaa cgacaacggc gaactcatcc gcatcagcag cccgcgccag
     1381 acccggagtt acagctacag caccaccggc aggctgaccg gcgttcacac caccgcagcg
     1441 aaccttgata tccgcatccc gtatgccaca gacccggcag gtaaccgcct gcccgacccg
     1501 gagctgcacc cggacagcac cctcagcatg tggccggata accgtatcgc ccgtgacgcg
     1561 cactatcttt accggtatga ccgtcacggc aggctgacag agaaaaccga cctcatcccg
     1621 gaagggggta tccgcacgga tgatgagcgc acccaccggt accattacga cagtcagcac
     1681 cggctggtgc actacacgcg gacacaatat g
//
LOCUS       DAJVUN010000330         1650 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.336, whole genome shotgun sequence.
ACCESSION   DAJVUN010000330 DAJVUN010000000
VERSION     DAJVUN010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.336"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            33..452
                     /gene="leuE"
                     /locus_tag="OQQ76_004131"
     CDS             33..452
                     /gene="leuE"
                     /locus_tag="OQQ76_004131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016236702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine efflux protein LeuE"
                     /protein_id="HCS1970382.1"
                     /translation="MLFNIVRYLGAFYLLYLESKILYATLKGKNNEAKSDEPQYGAIF
                     KRALILSLTNPKAILFYVSFFVQFIDVNAPHTGISFFILATTLELVSFCYLSFLIISG
                     AFVTQYIRTKKKLAKVGNSLIGLMFVGFAARLATLQS"
     gene            625..985
                     /gene="yeaR"
                     /locus_tag="OQQ76_004132"
                     /pseudo
     CDS             625..985
                     /gene="yeaR"
                     /locus_tag="OQQ76_004132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310533.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            989..1171
                     /locus_tag="OQQ76_004133"
     CDS             989..1171
                     /locus_tag="OQQ76_004133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1869 domain-containing protein"
                     /protein_id="HCS1970383.1"
                     /translation="MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVN
                     TVRSYDTENEHDVCGW"
     gene            1319..1567
                     /locus_tag="OQQ76_004134"
     CDS             1319..1567
                     /locus_tag="OQQ76_004134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HCS1970384.1"
                     /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGG
                     WISTLFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIKS"
BASE COUNT          426 a          360 c          398 g          466 t
ORIGIN      
        1 ctggagtggc gacattaatt aagaccaccc cgatattatt caacattgta cgttatcttg
       61 gtgcgtttta tttgctatat ctggagagta aaattctcta cgcgaccctg aagggtaaaa
      121 ataacgaggc caaatccgat gagccccaat acggggccat ttttaaacgc gcgttaattt
      181 tgagcctgac taatccgaaa gccattttgt tctatgtgtc gtttttcgta cagtttatcg
      241 atgttaatgc cccacatacg ggaatttcat tctttattct ggcgacgacg ctggaactgg
      301 tgagtttctg ctatttgagc ttcctgatta tttctggtgc ttttgtcacg cagtacatac
      361 gtaccaaaaa gaaactggct aaagttggca actcactgat tggtttgatg ttcgtgggtt
      421 tcgccgcccg actggcgacg ctgcaatcct gatacattca gcccgcgttg tcgcgggctt
      481 cccacttgta atcctccctg atttttctct gatatggtgc taaaaagtaa ccaataaatg
      541 gtatttaaaa tgcaaattat caggcgtacc ctgaaacggc tggaataaac cgttttcagc
      601 gcattcaccg aaggagggaa aaggatgctg caaatcccac agaattatat tcatacgcgc
      661 tcaacgcctt tctggaataa acaaactgcg cctgccggaa taattcgaac gtcatcttga
      721 taaaggaacg cgccaggggg gttacccacg cctttccgtt atgcatgggg cggtcaaata
      781 tctcggctac gctgatgaac acagtgcaga gcctgatcag gtgatcctta tcgaagcggg
      841 gcagtttgcg gtgttccctc cagaaaagtg gcacaacatt gaagccatga ctgacgatac
      901 ttatttcaac attgacttct tcgtggctcc tgaagtcctg atggaaggtg cgcaacaacg
      961 gaaagtcatt cataacggga aatgaatcat gggcaaagca acgtataccg tgaccgtcac
     1021 caataacagt aatggcgttt ctgtcgatta tgaaacagag acgccgatga ctttgctggt
     1081 gccagaagtg gcggctgaag tgataaaaga tctggtgaat accgtgcgtt cttatgacac
     1141 ggaaaacgaa catgatgttt gtggttggta attatcactg atcgttgatg gcgcaatttc
     1201 tgcgccatcg caaaaaaatc ctccgtgatg ctcgtcacaa atcttgccct cccgatgttg
     1261 tgctatgctt tttatcagcg actaacccgc taatgcaaaa cagataagtg aggaaacaat
     1321 gggcattctg tcatggatta tttttgggct tattgccggt attctggcga agtggatcat
     1381 gccaggtaaa gatggtggtg gattctttat gactatcctg ctggggatag tcggtgccgt
     1441 agtcggcgga tggatcagca cgctgtttgg ctttggtaaa gtcgatggct tcaattttgg
     1501 cagcttcgtg gttgccgtta ttggtgcgat tgtcgtgcta tttatctaca ggaagattaa
     1561 aagttaacgc ttaaattgca caaaggctgc acacaggcag cctttactat tttttagagg
     1621 tgacgttacc accatcccag ctcagtgccg
//
LOCUS       DAJVUN010000331         1641 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.337, whole genome shotgun sequence.
ACCESSION   DAJVUN010000331 DAJVUN010000000
VERSION     DAJVUN010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.337"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1101
                     /gene="bcsE"
                     /locus_tag="OQQ76_004135"
     CDS             <1..1101
                     /gene="bcsE"
                     /locus_tag="OQQ76_004135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsE"
                     /protein_id="HCS1970385.1"
                     /translation="FSLLLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLS
                     VQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEAR
                     TAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACG
                     ANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNA
                     VNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSF
                     CRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQS
                     SKPVINAEHDGRHWRRIPEPMRLLDNAVERSS"
     gene            1098..1289
                     /gene="bcsF"
                     /locus_tag="OQQ76_004136"
     CDS             1098..1289
                     /gene="bcsF"
                     /locus_tag="OQQ76_004136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsF"
                     /protein_id="HCS1970386.1"
                     /translation="MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR
                     YVKPAGTLRRTEKARATKK"
     gene            1286..>1641
                     /gene="bcsG"
                     /locus_tag="OQQ76_004137"
     CDS             1286..>1641
                     /gene="bcsG"
                     /locus_tag="OQQ76_004137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HCS1970387.1"
                     /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP
                     LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFS
                     TDYLIDLVTRFINWQM"
BASE COUNT          362 a          433 c          413 g          433 t
ORIGIN      
        1 ttttcattgt tgcttgagga ataccgttca ctttttggtc ttgccagttt gcgttttcag
       61 ggtgaccaac atttgctgga tattgccttc tggtgcaacg aaaaaggggt cagcgcccgt
      121 cagcagctta gcgttcagca acaaaatggt atctggacat tagttcaaag cgaagaggcg
      181 gagatccaac cacgcagcga cgaaaaacgc attctgagta atgttgctgt actggaaggt
      241 gcgccgccgc tatcggaaca ctggcaactg ttcaacaata acgaagtcct gttcaatgaa
      301 gcccgtaccg ctcaggcggc gacggtggtc ttttctttac agcaaaatgc gcaaatcgag
      361 ccactggccc gcagcattca taccctgcgt cgccagcgcg gtagtgcgat gaaaatcctc
      421 gtgcgggaaa ataccgctag cctgcgcgcc accgatgaac gtttgttatt ggcctgcggt
      481 gcaaatatgg ttattccgtg gaatgcgcca ctctcccgtt gtctgacgat gatcgaaagc
      541 gtgcaagggc agaagtttag tcgctatgtg ccggaagata tcactacctt gctgtcaatg
      601 acccagccgc tcaaactgcg tggtttccag aagtgggatg tgttctgtaa tgccgtcaac
      661 aacatgatga ataaccctct attacctgcc cacggtaaag gcgttctggt tgccctacgt
      721 ccggtaccgg gtatccgcgt tgaacaagcc ctgacgctgt gtcgccctaa ccgtaccggc
      781 gatatcatga ccattggcgg taatcggctg gtgctgtttc tctcattctg tcggattaac
      841 gatctggata ccgcgttgaa tcatattttc ccattgccta ctggcgacat tttctcaaac
      901 cgtatggtct ggtttgaaga tgatcaaatc agtgccgagc tggtgcagat gcgcctgctt
      961 gccccagaac aatggggcat gccgctgcct ttaacgcaaa gttctaaacc ggtcatcaat
     1021 gccgagcacg atggtcgcca ctggcgacga ataccagaac ccatgcgact gttagataat
     1081 gctgtggagc gctcatcatg atgaccatca gcgatatcat tgaaattatt gtcgtttgcg
     1141 cactgatatt tttcccgctg ggctatctgg cgcggcactc tttgcgacgc attcgcgaca
     1201 ccttacgttt gttctttgct aaacctcgtt atgttaaacc ggccgggaca ttacgccgca
     1261 cggaaaaagc cagggcaacc aaaaaatgac tcaatttacg caaaataccg ccatgccttc
     1321 ttccctctgg caatactggc gcggcctttc cggctggaac ttctattttc tggttaagtt
     1381 cggcctgttg tgggcgggat atcttaactt ccatccgctc ctcaatttgg tgtttgccgc
     1441 gtttctgctg atgcccattc cgcgctacag cctgcatcgc ttgcgccact ggattgccct
     1501 gccgatcggc tttgctttgt tctggcatga cacctggttg cctggcccgg aaagcataat
     1561 gagccagggt tcgcaggtgg cggggttcag taccgattat ttaatcgacc ttgtcacacg
     1621 ctttattaac tggcagatga t
//
LOCUS       DAJVUN010000332         1627 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.338, whole genome shotgun sequence.
ACCESSION   DAJVUN010000332 DAJVUN010000000
VERSION     DAJVUN010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.338"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(252..>1627)
                     /locus_tag="OQQ76_004138"
     CDS             complement(252..>1627)
                     /locus_tag="OQQ76_004138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HCS1970388.1"
                     /translation="RIEQGLYRHGDKLPSVRSLSQEHGVSISTVQQAYQTLETMKLIT
                     PQPRSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLEAHSDNSIVPLSKSTPD
                     VETPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARQMLDSGSVVTADDIII
                     TSGCHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEA
                     LELALEQWPIKGIILVPNCNNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATE
                     YPRPRTIHSWDIDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPS
                     TQMAAATFVLEGHYHRHIRRMRQTYQRNLALYTCWIREYFPYEICITRPKGGFLLWIE
                     LPEQVDMVCVARQLYRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGD
                     VVHRAME"
BASE COUNT          387 a          452 c          413 g          375 t
ORIGIN      
        1 gagtactaat cagaggctga tgacaaacgc aaagcagcct gatgcgctac gcttatcagg
       61 tctacataat ccattaaata tattgaactt ttaatatttt gtagacctgg taaggcgttc
      121 acatggcatc tggcatgaac gaagcacact ttgcctaagc catgccggaa cgtggcgatg
      181 tcgctataaa gataaaacga gtcacaggtt attcgtgaga gtaaatcagg ggcctcggca
      241 ctaattcgaa tttattccat tgcccgatgc acgacatcgc caatttgctt tagtgcttcg
      301 cgataggttt cgctgagcgg caaagcgcag ttgatgcgca gacaattacg gtatttgccg
      361 gaagccgaga aaatcgagcc tgccgccacc tggattttca tgcggtacag ctgccgcgcg
      421 acgcagacca tatcgacctg ttcaggcaat tcgatccaca gtaaaaatcc gcctttcggg
      481 cgcgtaatac agatttcgta gggaaaatat tcccgtatcc agcaggtata aagcgccaga
      541 ttgcgctgat aagtctgccg catccgccgg atatggcgat gatagtggcc ttccaacaca
      601 aacgttgccg ccgccatttg cgtggacggc acattaaagc tgctgatggc gtatttcata
      661 tgcatcagtt tatcgtgata acgccccggt gcgacccaac ccacgcgcag gcctggagca
      721 atacttttac tgaacgagct gcacaacagc actcgcccgt cgatatccca tgaatggatg
      781 gtccgcgggc gcggatactc cgttgccagt tcgccgtaga catcatcttc aaaaatcaca
      841 atatcatgac gctgagcgag agagagaacg gcccgtttgc gtgcgtccgg cataataaat
      901 cccagcggat tattacagtt tggcaccaga atgatgcctt taatcggcca ctgttccagc
      961 gccagttcca gtgcttcaac gctgatgcca gtttctggat cggttgggat ttcaatcact
     1021 ttcacgccca tgcctcgcag catctgcatc gaaccgtaat aacagggaga ttcgaccgcg
     1081 acaatatcgc ccggtttaca caccgccatt aacgccagcg acatcgagtt atggcagccg
     1141 ctggtgatga tgatgtcatc ggcggtgacc accgagccgc tgtcgagcat ctggcgggca
     1201 atctgctccc gcaacactcg ctgaccggct aacaagtcat aaccgagcac ggtttgtaga
     1261 ttatgctgca ccacccggct tagctcacgc cagagtggtt tcaggctggg cgtttcgaca
     1321 tccggcgtgc ttttgcttaa cggaacaatg gaattgtcgc tatgcgcctc cagcatatcc
     1381 agcacctgat cccactgggt aatttccacc gggcgctgca ccggacgcgt catcggcggt
     1441 acaggcggct gggctttacg ttgtgcgaca aaataacccg aacgcggctg cggagtgatg
     1501 agcttcatcg tctccagcgt ctggtacgcc tgctgcacgg tgctgatgct gacgccgtgc
     1561 tcctgactta agctgcgcac cgacggcaat ttatccccgt gacgatacag cccttgctca
     1621 atccgct
//
LOCUS       DAJVUN010000333         1561 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.339, whole genome shotgun sequence.
ACCESSION   DAJVUN010000333 DAJVUN010000000
VERSION     DAJVUN010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.339"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..432
                     /locus_tag="OQQ76_004139"
     CDS             <1..432
                     /locus_tag="OQQ76_004139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1970389.1"
                     /translation="PDIPAGFVAVFNSDEASWHLVEDHRGKTVYDVASGDALFISELG
                     SLPGNVTWLSPEGEFQKWNGTAWVKDTEAEKLFRIREAEEKKTRLIQEATDNITILQD
                     AVNFEMATDEEVSMLSSWKKYRVLVSRIDINTAPDIVWPEL"
     gene            complement(443..988)
                     /locus_tag="OQQ76_004140"
     CDS             complement(443..988)
                     /locus_tag="OQQ76_004140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001533330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine acetyltransferase"
                     /protein_id="HCS1970390.1"
                     /translation="MNISELKKCIHYEVIGCKRPFSWRKAIVRAIKHRRSRYLFWWRI
                     AKYLFDKGGYRRKIAGKIERFILDKYNVTVPLTVNIGKGFDISYLNGVVIGHKVTIGE
                     NCSIKPGVTIGLRGEFNDMDIVIGNNVTIGCNATILGGKVHIGNNVKIGAHALVLHDI
                     PDDSTFITKFHSEIIYNSSHT"
     gene            1070..1198
                     /locus_tag="OQQ76_004141"
                     /pseudo
     CDS             1070..1198
                     /locus_tag="OQQ76_004141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308311.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(1302..1550)
                     /locus_tag="OQQ76_004142"
     CDS             complement(1302..1550)
                     /locus_tag="OQQ76_004142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HCS1970391.1"
                     /translation="MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWKSADEWFFH"
BASE COUNT          437 a          309 c          340 g          475 t
ORIGIN      
        1 ccagatattc ctgctggctt tgtggctgtt ttcaacagtg atgaggcatc gtggcatctc
       61 gttgaagatc atcggggtaa aacggtttat gacgtggctt ccggcgacgc gttatttatt
      121 tctgaactcg gctcattacc gggaaatgtc acttggttat ccccggaagg ggagtttcag
      181 aagtggaacg gcacagcctg ggtgaaggat acggaagcag aaaaactctt ccggatccgg
      241 gaggcggaag agaaaaagac aagattaatc caggaagcga ctgataacat aacaattctg
      301 caggatgctg ttaattttga aatggcaact gatgaggagg tttcgatgct atcttcctgg
      361 aaaaaatacc gggtattagt gagtcggatt gatataaata cagccccgga tatcgtatgg
      421 cctgagctgt gattaaacgg aattatgtgt gagatgaatt ataaataatt tcagagtgaa
      481 atttggtaat gaatgtggag tcatcaggaa tgtcatgcag taccaatgca tgagctccta
      541 tttttacatt attccctata tgcactttgc caccaaggat ggtggcgtta cagccaatgg
      601 ttacattatt tcctatgaca atatccatat cattaaattc accgcgaagt ccaatagtta
      661 ccccaggctt aattgaacaa ttttcaccta ttgtaacttt gtgaccgata acaacgccat
      721 tgagataaga tatgtcgaac cctttaccaa tatttacagt taagggaacg gttacattgt
      781 atttatcaag aatgaagcgt tctatttttc ctgcaatctt tcgccggtat ccgcctttat
      841 caaaaagata ttttgctatg cgccaccaaa ataaataacg tgatcttctg tgttttattg
      901 cgcgaacaat tgcttttcgc caggagaaag ggcgtttaca acctattact tcatagtgta
      961 tgcacttttt aagttcacta atattcatat atctattatt cagtaaagat aattctgtaa
     1021 cttattatat taggtttaat gggctttttc tacagtttac tgtattactc tcacgccgga
     1081 gcaataggca caggccggac gacaaattgc atcaggagtt tctcgccaga aggtggtgat
     1141 catctatgat gttggcgtat cgactttgta taagaagttt ccggtcggag atgaatgaaa
     1201 ccgtagcacg tcgtatgcaa gaacgtgcca cggctggctg gcgaactttc gatagtgcga
     1261 gtattgaatg atttccagct gttaccgatt ttacgtgtta attagtgaaa aaaccactcg
     1321 tcagcagact tccaggtatc tttcagagtc tcctgaacaa aagttttagc tgaatcttta
     1381 tcggcggtgc gcgtaacaga aagaccatcg ttgctggtgg cttttacgat cacctctaca
     1441 tcgtcataac gtttactgat gcgtcgggtt aattcttcct ttaacgcatc cacagcaccg
     1501 tttggcattt tagtgatttt ttctttagcg atacagatct caacacgcat aacaccctcc
     1561 t
//
LOCUS       DAJVUN010000334         1530 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.340, whole genome shotgun sequence.
ACCESSION   DAJVUN010000334 DAJVUN010000000
VERSION     DAJVUN010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.340"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(45..818)
                     /locus_tag="OQQ76_004143"
     CDS             complement(45..818)
                     /locus_tag="OQQ76_004143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiO family outer membrane beta-barrel protein"
                     /protein_id="HCS1970392.1"
                     /translation="MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAY
                     AELVAKVENATLLFNLSQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTP
                     VFARQDFRQDINLALLPKTLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTH
                     YDSSDAGGSYSNMISVRLNDPRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQR
                     IQPLTEQLNLGLTAGKVWYDTPTDDYNGLQLAAHLTWKF"
     gene            complement(820..1512)
                     /locus_tag="OQQ76_004144"
     CDS             complement(820..1512)
                     /locus_tag="OQQ76_004144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000365045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HCS1970393.1"
                     /translation="MDLLPFLLDANLSATNPPAIPHWWKRQPLIPNLLSQELKNYLKL
                     NVKEKNIQIADQVIIDETAGEVVIGANTRICHGAVIQGPVVIGANCLIGNYAFIRPGT
                     IISNGVKIGFATEIKNAVIEAEATIGPQCFIADSVVANQAYLGAQVRTSNHRLDEQPV
                     SVRTPEGIIATGCDKLGCYIGQRSRLGVQVIILPGRIISPNTQLGPRVIVERNLPTGT
                     YSLRQELIRTGD"
BASE COUNT          404 a          367 c          370 g          389 t
ORIGIN      
        1 aatcggcagg gaaggccgcc caggatagcg ggcggcagaa ggaatcagaa tttccaggtc
       61 agatgggctg caagttgcag accgttataa tcatcggttg gggtgtcgta ccacacttta
      121 cctgccgtca gcccgagatt aagttgctca gtcagcggtt gaatacgttg cagactgacg
      181 ctcttcatgc tgccgtagcg tgtttctggc gtccagtcat aggtgtaagc gcctgttccg
      241 cggcttagcc atagttgcgt ataaccagtg ccgcgcgggt cattcagacg cacggaaatc
      301 atattgctat aactaccacc tgcatcgctg gagtcataat gggtatagcg gtagctggtg
      361 atcaccgggc cagtatagag tgatacgccg ccttgccagg catcgacttc gacatcatcg
      421 taatatttag tgtagcgata accggtcgtg aaaagcgttt ttggcaacag ggccaggtta
      481 atatcctgac gaaaatcctg gcgggcaaag accggcgtat tatccgcaaa ggcaataccc
      541 gttcgggttg tcagccagtt attccattta taccagaccg caccctgacc gcgagtggca
      601 ttgaaatgtt cagtttcata atcacgacgc ccctgggaaa gattaaaaag cagcgttgcg
      661 ttttcaactt tcgccaccag ttcagcatac gctaaattac ggttgccatg atcgccagaa
      721 taatcggtaa aatcgtagcc cgcggtaatg gacgttaacc cggcataagc gggcaatgcg
      781 ctaaaaatgg ccgccgctaa taacgtccgt tttatcattt taatctcctg tacggataag
      841 ttcttgtcgg agtgaataag ttccggtagg taaattacgt tctacaatca cgcgcgggcc
      901 aagttgcgtg ttcggggaaa taattcgccc aggcaaaata ataacttgta cgccaaggcg
      961 tgaacgctgc ccgatataac aacctaattt atcgcatccg gtagcgataa ttccctctgg
     1021 agttcgaaca gacacaggct gttcatccag acgatgatta ctggtacgta cttgtgcgcc
     1081 caaatatgcc tggtttgcaa ctaccgagtc ggcaataaaa cattgcggac caatcgttgc
     1141 ttccgcttca ataaccgcat ttttaatttc ggtggcaaaa ccaattttta caccattgct
     1201 gattattgtg ccaggacgaa taaacgcata attacctatc aggcagtttg cgccaatcac
     1261 taccggaccc tgaataacgg caccatgaca aatacgggta ttcgcgccga taacaacttc
     1321 acctgcagtt tcatcaataa ttacctggtc tgcaatctga atatttttct ctttaacatt
     1381 aagcttcaga tagtttttca gttcctgtga cagaaggttg ggaataagtg gttgacgctt
     1441 ccaccagtgc ggaatagcgg gtgggtttgt cgcgctgagg ttcgcgtcca gtaaaaaagg
     1501 caataagtcc ataaataatc cagatggcat
//
LOCUS       DAJVUN010000335         1519 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.341, whole genome shotgun sequence.
ACCESSION   DAJVUN010000335 DAJVUN010000000
VERSION     DAJVUN010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.341"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            232..1452
                     /locus_tag="OQQ76_004145"
     CDS             232..1452
                     /locus_tag="OQQ76_004145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HCS1970394.1"
                     /translation="MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLML
                     YLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNS
                     LSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPA
                     AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTW
                     YANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVS
                     GVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHW
                     YQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKAKNYQRYNERI
                     KGKRQEWGILCNND"
BASE COUNT          427 a          358 c          326 g          408 t
ORIGIN      
        1 aaagctttac atttcctata ataaatcttc tttaaataat ttggtgttct cccgatttat
       61 tgaccgtcta aatgagagtt tttgatatat aactacagac agctactata actttcatct
      121 atttattcac agcgcgaatg aaaaataaaa cactctgctt tacagtgttt actttataat
      181 taacagtctt atctcactgt tcaccctgta acgttcagag agcgtcttca gatgtctatt
      241 tataaaattc ctcttccgct caatattctg gaagctgcac gagagcgtat tacctggaca
      301 ctcaacaccc taccccgcgt ttgtgtctca ttttctggcg gcaaagactc tggtttaatg
      361 ctgtatctga cagccgaact tgcccgacaa atgggcaaaa aaatctgcgt tttgtttatc
      421 gactgggagg cgcaattctc ttgcactatt aactatgttc agtccctgcg cgagttgtac
      481 accgatgtca tcgaagagtt ttactgggtt gcgctcccgc ttacgacgca aaattccctt
      541 tcacaatacc aacccgaatg gcagtgctgg gaacctgatg tcgaatgggt gcgtcagccc
      601 ccgcaagatg cgataaccga tcctgacttt ttctgctttt accagccagg catgaccttc
      661 gaacaatttg tacgtgagtt tgccgaatgg ttttcacaaa aacgtccggc ggcgatgatg
      721 atcggcatcc gtgcggatga gtcctacaac cgttttgtcg ccatcgccag tttaaataaa
      781 caacgttttg ccgacgataa accatggact acggccgcac caggcggtca tagctggtac
      841 atttacccca tttacgactg gaaagtggct gatatctgga cctggtatgc aaatcatcaa
      901 agtctctgca acccactgta taacctaatg tatcaggcag gcgttcctct gcgtcatatg
      961 cgaatttgcg aaccttttgg cccggagcaa cgacaaggat tatggctcta tcacgttatc
     1021 gaaccggatc gctgggctgc tatgtgcgca cgagtcagcg gggtaaaaag tggcggcatt
     1081 tacgccggac atgacaatca tttctatggg catcggaaaa tcctcaagcc agaacattta
     1141 gactggcaag aatatgcatt attgctgctc aatagcatgc cggaaaaaac agctgagcat
     1201 taccgcaata aaatcgccat ttatttgcac tggtatcaga aaaaaggcat cgaggttcca
     1261 caaacccagc aaggggacat tggcgcgaaa gatatcccct cctggcggcg gatatgcaaa
     1321 gttttactca ataacgatta ctggtgtcgg gcattatcat ttagtcctac gaaagcgaag
     1381 aactatcagc gttataacga acggataaaa ggaaaacgtc aggaatgggg gatactatgc
     1441 aacaacgatt aacgcaggat ttaacgcaat ttctcgccag cttgccggaa gatgatcgca
     1501 tcaaagcgat taatgaaat
//
LOCUS       DAJVUN010000336         1507 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.342, whole genome shotgun sequence.
ACCESSION   DAJVUN010000336 DAJVUN010000000
VERSION     DAJVUN010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.342"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..192)
                     /locus_tag="OQQ76_004146"
     CDS             complement(<1..192)
                     /locus_tag="OQQ76_004146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4754 family protein"
                     /protein_id="HCS1970395.1"
                     /translation="MGKEYKTLINKALERFYFRLSASGAHAERAARDSLTRAIRSLYD
                     VAFYADDLDALNELSELICA"
     gene            complement(204..491)
                     /locus_tag="OQQ76_004147"
     CDS             complement(204..491)
                     /locus_tag="OQQ76_004147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970396.1"
                     /translation="MTKDHAQGVFIRFIDFRGELLLRASAIDGVTPAGKNGADEATYV
                     YLNGTRLLVELPYQTVREIISEAEKARQVNGDEPYIEIICMDSEAEIQKAD"
     gene            complement(502..840)
                     /locus_tag="OQQ76_004148"
     CDS             complement(502..840)
                     /locus_tag="OQQ76_004148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001698482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4761 family protein"
                     /protein_id="HCS1970397.1"
                     /translation="MLKQRRNFRTGTERHANRFTTSASRSNIRYSLSDTHATQDGYPV
                     KQIGEHTWLIEKAGIVIHKCPRNPFTGNRIFALSCGDNQFGQDFTLYEALRTIDRLLR
                     GQSFIKQTDL"
     gene            complement(855..1133)
                     /locus_tag="OQQ76_004149"
     CDS             complement(855..1133)
                     /locus_tag="OQQ76_004149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCS1970398.1"
                     /translation="MAKVLNTHEQADFERLAAFYPYRDEHGLPVLEESLKDYAKRTNQ
                     AVNTVKRQADRGSIPINQDEKNSRRTVNLFALFLKTIRSAEKYVQMTK"
     gene            1230..>1507
                     /locus_tag="OQQ76_004150"
     CDS             1230..>1507
                     /locus_tag="OQQ76_004150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000904671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1970399.1"
                     /translation="MLIGEKIRVIRESEDLTREEFCGLIDVPIGTLRRYETGRIENIG
                     GEVLIKIVNHPRFFKYMNWLMTGKTNEAAGQISPSLSPDGPENTSSSQ"
BASE COUNT          364 a          332 c          360 g          451 t
ORIGIN      
        1 ggcacagatc agctcggaaa gttcgttaag tgcatccaga tcatcagcgt aaaaagccac
       61 gtcatacaga cttcggattg ctctggtcaa tgagtcacgg gccgcacgtt cagcatgagc
      121 gcctgatgca cttaagcgaa aataaaaacg ctcaagtgct ttgttaatga gagttttata
      181 ttctttgccc atcacaacgc cctttaatct gctttctgta tttcagcttc tgaatccata
      241 caaataattt cgatataggg ttcatcgcca ttaacctggc gtgccttttc agcttcgcta
      301 atgatttctc gtacggtctg gtacggaagt tccacaagca gtcgcgtgcc gttcagataa
      361 acgtaagtgg cttcgtcggc tccgttttta cccgccggag tcactccgtc aatagcggat
      421 gcacgtaata acagttcacc gcgaaaatca ataaaacgga taaatacacc ttgtgcatgg
      481 tctttggtca taaagcacct gttataaatc agtctgttta ataaaacttt gcccgcgaag
      541 cagacgatca atcgtgcgaa gtgcttcgta taatgtgaaa tcctgcccga actgattgtc
      601 gccacagctc aatgcaaaaa tgcggtttcc ggtaaacgga ttgcgtgggc atttgtggat
      661 cacgattcca gctttctcaa tcagccaggt gtgctcgccg atttgtttta ctgggtagcc
      721 atcctgcgtt gcgtgtgtat cactcaggct gtagcggatg ttgctgcgtg atgcactggt
      781 agtgaaacgg ttagcgtggc gttctgttcc ggtacgaaaa ttacggcgtt gcttcagcat
      841 aaaatgacac ctcgttattt tgtcatctgc acgtattttt ctgcgctcct gattgttttc
      901 aggaaaagag cgaagagatt tactgtgcgt cttgagttct tttcatcttg gttgatggga
      961 attgaacctc tgtcagcctg tcttttcact gtgttaacag cttggttggt acgctttgcg
     1021 taatctttca ggctttcttc aagtactggt aacccatgct catcgcggta gggatagaac
     1081 gctgctaaac gctcaaagtc tgcctgttcg tgtgtgttca ggacttttgc catgtgtgat
     1141 aacctgcgct atctgtggtt gtttgtgact tggtgtgctt ataagtacac cttgtgcgca
     1201 agcttagtgt acttataggg acactgtcaa tgcttatcgg tgaaaaaatt agagtgattc
     1261 gtgaatcaga ggatttaacg cgcgaagaat tttgcggcct gattgatgtg cctatcggca
     1321 ctttgcgtcg ttatgaaacg gggcggattg aaaacatagg gggcgaagtg cttatcaaga
     1381 ttgttaatca ccctcgcttt tttaagtaca tgaattggct tatgacggga aaaacaaatg
     1441 aggctgctgg gcagatcagt ccctctctct cccctgatgg gccagaaaac acatcgtctt
     1501 ctcaaaa
//
LOCUS       DAJVUN010000337         1483 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.343, whole genome shotgun sequence.
ACCESSION   DAJVUN010000337 DAJVUN010000000
VERSION     DAJVUN010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.343"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..77)
                     /locus_tag="OQQ76_004151"
     CDS             complement(<1..77)
                     /locus_tag="OQQ76_004151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HCS1970400.1"
                     /translation="MSKVGINGFGRIGRLVLRRLLEVKS"
     gene            266..796
                     /gene="cybB"
                     /locus_tag="OQQ76_004152"
     CDS             266..796
                     /gene="cybB"
                     /locus_tag="OQQ76_004152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415935.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b561"
                     /protein_id="HCS1970401.1"
                     /translation="MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMI
                     HVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGL
                     VMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHY
                     FWKDNTLLRMMPRKRS"
     gene            1041..1214
                     /locus_tag="OQQ76_004153"
     CDS             1041..1214
                     /locus_tag="OQQ76_004153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970402.1"
                     /translation="MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCN
                     DGSISASKKTCTN"
     gene            complement(1286..1435)
                     /gene="hokB"
                     /locus_tag="OQQ76_004154"
     CDS             complement(1286..1435)
                     /gene="hokB"
                     /locus_tag="OQQ76_004154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokB"
                     /protein_id="HCS1970403.1"
                     /translation="MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALM
                     ACTSR"
BASE COUNT          398 a          326 c          351 g          408 t
ORIGIN      
        1 ttgcttttga cttcaagtaa tcgacgcaac accagtcgac cgatacgacc aaaaccgtta
       61 ataccaacct tactcatggt tttctcctgt caggaacgtt cggatgaaaa ttgatccttt
      121 ccaggcttag cccaggattg tgggatgggc aatctccatt cttacagtga aacgtaacgt
      181 actgaaaacg ggtgaacaat atttaatgaa attttgagaa aagcccgtta tgttaacgga
      241 aaattatgtt aaagcaggaa atgttatgga aaataaatac tcaaggttac aaatcagcat
      301 tcactggctg gtctttttgc tggttatcgc agcgtattgc gcaatggagt ttcggggttt
      361 cttcccacgt agcgatcggc cactcatcaa catgattcat gtttcctgcg gcatctcaat
      421 tctcgtgctg atggtcgttc gtcttttgtt aaggctgaaa tacccaaccc cgccgattat
      481 acctaagcca aaaccgatga tgacgggact ggcgcatttg ggacatttgg tgatttatct
      541 cctgtttatt gcgctgccag tgattggttt ggtgatgatg tataaccggg gcaacccgtg
      601 gtttgcgttt ggtttgacga tgccttacgc ttcagaggcc aatttcgaac gggttgatag
      661 cttaaagtcg tggcatgaaa cgctggcgaa tctgggatat tttgtcatcg ggttgcacgc
      721 tgcggctgca ctggcacacc actatttctg gaaggacaac acacttctac gcatgatgcc
      781 gcgtaaacgt tcctgaagga tatttaaaga aaacgcctgt actaaaaccg acccgtggta
      841 caggcgaaga atacgggtct acatcggaag cgcctattat atttatttgt atgacaaata
      901 aaaccataat ccttgcccat acgtccatct ggcttatttt taatcaattc acccgatctt
      961 tgatctcatc aacggtatca aaataaacca gcgtataacg ttcaaatcga acataagatt
     1021 cgataaacca tggaggttat atgaaaaaac tggcacttat tttgtttatg ggaacgcttg
     1081 tttcctttta tgccgatgcc gggcgcaaac cctgttctgg ttcgaaaggg gggatctcac
     1141 actgtacggc aggcggcaaa tttgtctgta atgatggttc tattagtgcc tcgaaaaaaa
     1201 catgcactaa ctgaagtgta aaaggggtgc catgagaaaa tgaatctgct agtcagatgc
     1261 gcggggaaaa tccccgcgct tgcccttacc tggacgtgca ggccatgagc gcagcaacct
     1321 ccttatcacc gtcccggaac cgcagttcgt agagcgtttg tcgggtcagg agtgtgaatg
     1381 tcagaatcgt aatgcagata atgagcagac acaccaccag agggttgtgc ttcatagcct
     1441 ttctccttgc cggatggcgg gtaagaggct aagatctgaa ttg
//
LOCUS       DAJVUN010000338         1452 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.344, whole genome shotgun sequence.
ACCESSION   DAJVUN010000338 DAJVUN010000000
VERSION     DAJVUN010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.344"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            489..>1452
                     /locus_tag="OQQ76_004155"
     CDS             489..>1452
                     /locus_tag="OQQ76_004155"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HCS1970404.1"
                     /translation="MPLPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSILIDAVKNK
                     ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAAADHHLEICGGGTHPF
                     QKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPH
                     FIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID
                     SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD
                     YLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPS"
BASE COUNT          370 a          382 c          330 g          370 t
ORIGIN      
        1 actatgactg ccgcaagggc atatttcgtc agcatgttta tattgcctcc atgcgaagaa
       61 gggactacca tccaaattgt tcaggtttgg gtaggtagcc ccagggttga tagaaatatc
      121 gtcctggggc ttcatctttc cagacctcag agtaaacctg aaaccggaaa gcttcaggca
      181 cccgcagtta tcttaccctt gcttagcaaa atagctgttt atttatacag taagtcctgt
      241 ttcggacttc tcactcccca tttgatcaac tgaagctgaa cccgtttttt tctgcatgcc
      301 tcaatcgtca aaattcttcg ccaccagtca gcactgccat aacttgtcac attgcaaaag
      361 tagccaaatt gcttctgtca taatcagttc accatcacca aaaaaaagaa acattccaga
      421 acttccgcat ctcgcccagc cgctcccact tctatactga atagaaaacg ccaacataag
      481 agaaacctat gccattaccc gattttcatg tttctgaacc ttttacactc ggtattgaac
      541 tggaaatgca ggtggttaat ccgccgggct atgacttaag ccaggactct tcaatactga
      601 ttgacgcggt taaaaataag atcacggccg gagaggtaaa gcacgatatc accgaaagta
      661 tgctggagct ggcgacggat gtttgccgtg atatcaacca ggctgccggg caattttcag
      721 cgatgcagaa agtcgtattg caggcagccg cagaccatca tctggaaatt tgcggcggtg
      781 gcacacaccc gtttcagaaa tggcagcgac aggaggtatg cgataacgag cgctatcaac
      841 gaacgctgga aaactttggt tatctcattc aacaggcgac cgtttttggt cagcatgttc
      901 atgttggctg cgccagtggc gatgacgcca tttatttgct gcacggcctg tcacggtttg
      961 tgccgcactt catcgccctt tccgccgcgt cgccatatat gcaaggaacg gatacgcgtt
     1021 ttgcctcctc acgaccgaat attttttccg cctttcctga taatggcccg atgccgtggg
     1081 tcagtaactg gcaacaattt gaagccctgt ttcgctgtct gagttacacc acgatgatcg
     1141 acagcattaa agatctgcac tgggatattc gccccagtcc tcattttggc acggtggagg
     1201 ttcgggtgat ggataccccg ttaaccctta gccacgcggt aaatatggcg ggattaattc
     1261 aggctaccgc ccactggtta ctgacagaac gcccgttcaa acatcaggag aaagattacc
     1321 tgctgtataa attcaaccgt ttccaggcct gtcgctatgg gctggaaggc gtcattaccg
     1381 atccgcacac tggcgatcgt cgaccgctaa cggaagacac cttgcgattg ctggaaaaaa
     1441 tcgccccttc cg
//
LOCUS       DAJVUN010000339         1433 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.345, whole genome shotgun sequence.
ACCESSION   DAJVUN010000339 DAJVUN010000000
VERSION     DAJVUN010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.345"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..1433
                     /gene="fdrA"
                     /locus_tag="OQQ76_004156"
                     /pseudo
     CDS             1..1433
                     /gene="fdrA"
                     /locus_tag="OQQ76_004156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415051.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
BASE COUNT          320 a          371 c          429 g          313 t
ORIGIN      
        1 ccacgccttt attaaaaaag ggtgttttca ggattcggtc agtttaatga ttatttcacg
       61 aaaactcagc gaatcagaaa atgttgatga tgtttccgta atgatgggta cgcccgccaa
      121 taaagcgtta ttagatacca caggtttctg gcatgacgat tttaataacg ccacgccgaa
      181 cgatatttgc gtggcaattc gtagcgaagc ggcggatgcg gggatcgcgc aggcgattat
      241 gcagcagctt gaagaggcgc taaaacaact ggcgcagggg gcaggcagca gccagtcctt
      301 gacgcaggtg cgtcgctggg acagtgcctg tcagaaatta tccgatgcca atctggcgct
      361 gatttcagtg gctggcgagt atgcggcgga gctggcgaat caggcgctgg atcgcaacct
      421 caacgtgatg atgttctccg ataacgtcac gctggaagat gaaatccaac ttaaaacccg
      481 cgcgcgagaa aaaggcttgc tggtgatggg gccggactgc ggtacgtcga tgattgccgg
      541 cacgccgctg gcttttgcta acgtgatgcc ggaaggcaac attggcgtca ttggcgcttc
      601 cggtaccggg attcaggaac tgtgttcgca gattgcgcag gcaggggagg gaattactca
      661 cgcgattggt cttggcgagc gcgacctcag ccgtgaagta ggcggcatca gtgcgctgac
      721 ggcgctggaa atgctcagtg cagacgagaa aagcgaagtg ctggcatttg tttcaaagcc
      781 acctgccgaa gctgtgcgtc tgaaaattgt taatgccatg aaagcaaccg gcaaaccgac
      841 ggtggcgctg tttttaggtt ataccccggc ggtggcccgc gacgagaatg tctggtttgc
      901 ctcctcgctg gatgaggccg cacgcctggc ttgcctgctt tcacgcgtca cggcgcgacg
      961 taacgcaata gcgcctgtca gcagcggatt tatttgcggt ttgtataccg gcggtacgct
     1021 ggctgccgaa gcggcgggat tacttgctgg acaccttggc gtggaagccg acgataccca
     1081 tcatcacggc atgatgctcg acgccgatgg tcaccagatt attgacctcg gcgatgattt
     1141 ctacaccgtc gggcgtcccc atccgatgat cgacccagcc ttacgcaacc agttaattgc
     1201 cgatctcggc gctaaaccac aagtgcgcgt attgctactt gatgtcgtga ttggcttcgg
     1261 tgcgactgcc gatcctgccg cctcgctggt aagcgcctag caaaaagcct gtgccgcgcg
     1321 ttcagataat caaccactgt atgccattgc cacggtgaca ggcactgaac gtgacccgca
     1381 atgccgctcg cagcaaatcg ccacgctgga agatgcgggg atcgcggtag tga
//
LOCUS       DAJVUN010000340         1410 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.346, whole genome shotgun sequence.
ACCESSION   DAJVUN010000340 DAJVUN010000000
VERSION     DAJVUN010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.346"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..206
                     /locus_tag="OQQ76_004157"
     CDS             <1..206
                     /locus_tag="OQQ76_004157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001696189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970405.1"
                     /translation="VNGRVRKVHGWPRGNCCWGNPDDKPFTGNKQVECDYMLSALRRM
                     ELRGHLNEIYDGVIVNKKEGNAA"
     gene            203..1147
                     /locus_tag="OQQ76_004158"
     CDS             203..1147
                     /locus_tag="OQQ76_004158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000628767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HCS1970406.1"
                     /translation="MITITKGRLLTIKQWRETYGPGSNVVLPAEEAEELARIALASLE
                     ADPVKRVNSDQMHRVCLEANRYLDKYDAMAKEVNKLLGRIAPPAPVFNGEYGDAYQGA
                     REDLSIWKRRALEADEHVRRLEQINDHMVKEAQGESRMGEPVIREPAPVVPEEATPEN
                     VEMLSGYVSTYKLTDSERDIAAEIWNACRAAMLQSGNFRENKNSSTNNFREIAETSTN
                     YPAIPSEVLSAILKVARIRADFDDFDGDRRGIGDCLDEAEQELIVTINKYASQLAAEP
                     IAPNDVREQTAIPQVPVTPDGWISCSERMPDDRQEVNQ"
     gene            1232..>1410
                     /locus_tag="OQQ76_004159"
     CDS             1232..>1410
                     /locus_tag="OQQ76_004159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HCS1970407.1"
                     /translation="MFALIQRGQIYTDRAGYPVVITRITEHSVFFRRMDGRSGRVRIG
                     ELNCLFEHIDHQEYR"
BASE COUNT          393 a          304 c          400 g          313 t
ORIGIN      
        1 ttgttaacgg aagagtacgg aaagtacatg gatggcccag gggtaattgc tgttggggta
       61 atcctgacga taagccattt accgggaata agcaggttga atgcgattac atgttatctg
      121 cattaaggcg catggagttg agagggcacc ttaatgaaat atatgacggt gtgattgtta
      181 ataagaaaga aggaaacgcg gcatgatcac tattaccaaa gggcgactgc tgacaatcaa
      241 gcagtggcgc gaaacatacg gaccgggtag caacgttgta ctgccagcag aagaagcgga
      301 agaactggca cggattgcac tggcatcatt ggaagcagat ccagttaaac gagttaactc
      361 agatcagatg caccgagtct gcttagaagc taatcgctat ttagataaat atgacgcgat
      421 ggcgaaagag gtaaataagt tgcttggacg catcgccccg ccagcgccag tatttaacgg
      481 cgaatacggt gacgcatatc agggcgctcg tgaagacctg tccatctgga aacggcgagc
      541 gcttgaagct gatgagcacg ttcggcgact ggagcaaatc aatgaccaca tggtgaaaga
      601 ggcgcaggga gaatcacgca tgggcgagcc tgtaatacgt gagccagcac cggtagtgcc
      661 tgaagaagca actccggaaa acgtagaaat gctctctggc tatgtttcaa cgtacaaatt
      721 aaccgatagc gagcgcgata ttgctgccga aatatggaac gcctgccgcg ccgccatgct
      781 tcagtccgga aactttcggg aaaacaagaa ttcgtcaacc aataattttc gggaaatcgc
      841 ggaaacgtca accaactatc cggcaattcc tagtgaggtg ttgtccgcaa tcctgaaggt
      901 tgccaggatt cgtgccgatt tcgatgattt tgacggtgac aggcgaggta tcggtgattg
      961 tctggatgag gctgagcaag agcttatcgt taccattaac aaatatgcca gtcagttggc
     1021 agcagaacct atagcgccta atgacgttcg agagcagaca gccattccac aagttccggt
     1081 aactccggat ggttggataa gctgtagtga gcgaatgccg gacgacaggc aggaggtgaa
     1141 tcaatgagct ggcctgatgc aatcgtaact ctgggggtgg tattcgcagc agcgtttgtt
     1201 gtgttctcga tttgtcgatg gggataacca catgttcgct ttgattcaac gcggtcagat
     1261 atacacggac agagctggat accccgtggt gattactcgc atcactgagc actcagtgtt
     1321 ctttcgacgg atggacggac gatccgggcg ggtacgcatt ggtgagttaa actgcctgtt
     1381 cgaacatatt gaccaccagg agtaccgcaa
//
LOCUS       DAJVUN010000341         1401 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.347, whole genome shotgun sequence.
ACCESSION   DAJVUN010000341 DAJVUN010000000
VERSION     DAJVUN010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.347"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            636..920
                     /locus_tag="OQQ76_004160"
     CDS             636..920
                     /locus_tag="OQQ76_004160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858243.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1970408.1"
                     /translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
                     CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
     gene            908..1393
                     /locus_tag="OQQ76_004161"
     CDS             908..1393
                     /locus_tag="OQQ76_004161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1970409.1"
                     /translation="MGCVTAPEPLSSFHQVAEFVSGEAVLDDWLKQKGLKNQAIGATR
                     TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
                     LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
                     Q"
BASE COUNT          359 a          301 c          380 g          361 t
ORIGIN      
        1 tctgttcagg tggccaaatt cagtgtgcca cttcagggcg gcatccggca tataggcagc
       61 atgaacgcaa cacaggctct cgtacggaac gtgggaacct gtcgtctcga tgctaaggga
      121 gcggcgcgga gcagaggcac tgcaagcgcc tgagtaccga tgcgagacac aggggcagat
      181 ggcttcgtag tagtgaggaa gtgcctgtaa tgggcatgga gcgaaggggg tcagtcgagg
      241 cgtttgaggt taccaatcga agctataccc ggtaatggcg taggttgacc tgcacttggc
      301 caagtggatt gcccgcaaac acaagcgagc gcgaggtagt ctggtgcgtg cattcgagtg
      361 gttactgcga attcgtcacg actgcccgac gctgtttgca cactggtgct tagcttacga
      421 tacttgaatg gttcaacgac aagagccgta tgacgcgaga gtgtcacgta cggttccgtg
      481 ggagcgtagg ggggcggtgc ccctgcgcca cccgatatcc cctttgagtg cggttacgtc
      541 cacagaggta aatgccgctg acgcggcatc tgtaatctgt tactttgtgt atatcatttg
      601 ctatatattg tcaatatgct attgttgtaa agcaaatgat atacggaggc tttatgaaat
      661 caggtgttca gctcaatctc agagcaagag aatcacagcg gatactcatt gatgctgctg
      721 cagaaattct tcataagtcg cgtacagatt tcattctgga aatggcctgt aaagctgctg
      781 aagatgttat tctcgaccgg cgggtgttta attttaatga caggcaatat gaagagttca
      841 ttgaaatgct tgatgctccg gttgcagatg atcctgccat cgaaaaattg ctggcaagga
      901 aacctcaatg ggatgtgtaa ctgcaccaga acctttatcc tcatttcatc aggtcgctga
      961 atttgtcagc ggtgaagctg tacttgatga ctggttaaag cagaaggggc taaaaaatca
     1021 ggcaatcgga gccacccgga cttttgttgt atgcagaaaa ggtacgcaac aaatagtcgg
     1081 tttttactca ctggccactg gtagtgtcaa tcatacagaa gctacaggta accttcggcg
     1141 caatatgcca gaccccattc ctgtaattat acttgcacgc ctggctgtag atgtgtcatt
     1201 tcgaggaaaa gggcttggcg cggatttact tcatgatgca gttcgtcgtt gttacagggt
     1261 tgccgaaaat atcggtgtgc gtgcaattat ggttcatgcg cttacggaaa acgcaaaaca
     1321 gttttatatt catcatggtt ttaagccatc aaaaactcag gtgcaaacat tgtttcttaa
     1381 actccctcaa tagggagtaa t
//
LOCUS       DAJVUN010000342         1369 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.348, whole genome shotgun sequence.
ACCESSION   DAJVUN010000342 DAJVUN010000000
VERSION     DAJVUN010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1369
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.348"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            443..1192
                     /locus_tag="OQQ76_004162"
     CDS             443..1192
                     /locus_tag="OQQ76_004162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HCS1970410.1"
                     /translation="MKRQLFTLSIVGVFSLNTFASFPPGNDVTTKPDLYYLTNDNAID
                     SLALLPPPPQIGSIAFLNDQAMYEKGRLLRNTERGKLAAEDANLSSGGVANVFSAAFG
                     SPITAKDSPELHKLLTNMIEDAGDLATRSAKEYYMRIRPFAFYGVSTCNTKEQDTLSR
                     NGSYPSGHTSIGWATALVLSEINPARQDTILKRGYELGDSRVICGYHWQSDVDAARIV
                     GSAIVATLHSNPVFQAQLQKAKDEFANNQKK"
BASE COUNT          377 a          280 c          286 g          426 t
ORIGIN      
        1 gagtggtgga ttagcccggc aggtgggcgc tggctcctga gcaccataaa cagggcttta
       61 cccgtcaata ttggctcctt ctgatgccat tctatttcag gaaggagtgt ccgttaaact
      121 caggctacct caaaaagtta tcggtgcgtt tatcgaaaaa catatgttct actaattgga
      181 gtcattgtct gtaaaagcaa ctcaaaaata caagttgctt attccccttg ttggtaagaa
      241 cttaattcta actgtttgtt ctgggtgttt taaacgtcct cctttttatg cttgttcata
      301 acggatgttt aataggtaac ctttgtttta gcatcttctg atttatttaa attatgtgat
      361 agtgcacaca attttattat ccagtacttt atactcttaa taaaataatt ataaatattt
      421 atcctctata aggagatgtt atatgaaaag acagcttttt actcttagta ttgtcggggt
      481 attttcttta aatacctttg catcattccc tccgggaaat gatgtgacaa caaaacctga
      541 cctttactac ctgacaaacg ataatgctat tgacagtctg gcattattac cgcctccacc
      601 acaaatcgga agtattgcct tcctgaatga ccaggccatg tatgaaaagg ggcgtttatt
      661 gcgaaatact gaaagaggga agctggcagc tgaggatgcc aatctcagta gtggtggcgt
      721 ggcaaatgta ttttctgctg cttttggttc tccgataacg gctaaagatt caccagaatt
      781 gcataaatta ctgacaaata tgattgagga tgccggagac ttggcaacgc gttcagcaaa
      841 agaatattat atgcgtattc gaccttttgc tttttatggt gtttctacgt gtaatacaaa
      901 agaacaggat acattatcca gaaatggctc ttatccatca ggtcatacat cgattggttg
      961 ggcaacagca cttgtattgt ccgaaataaa tccggcacgc caggatacca ttctgaaacg
     1021 gggttatgaa ctgggggaca gcagggttat ttgcggttat cactggcaaa gtgatgttga
     1081 cgcagcacgt attgttggct ctgctattgt agcaacactg cactcaaatc ctgtgttcca
     1141 ggcacaatta caaaaagcga aagatgaatt cgctaacaat cagaaaaaat aatgctttta
     1201 gccagtacgc cttataaccc cgaccttcag ggctaatgcc agtcagttaa gcaactgact
     1261 ggctcttttt cagggctgtg gggtatttcc agggcctctc ctttaccact ctcgggaagg
     1321 ccctttccct tcttgtcggt aatttcacta ggctgtgtcc ctcttaatg
//
LOCUS       DAJVUN010000343         1367 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.349, whole genome shotgun sequence.
ACCESSION   DAJVUN010000343 DAJVUN010000000
VERSION     DAJVUN010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.349"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..717
                     /locus_tag="OQQ76_004163"
     CDS             <1..717
                     /locus_tag="OQQ76_004163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000040175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HCS1970411.1"
                     /translation="FFDEVTLAYRGLTDEQKKVVDALGSGLINSLKVLAGVIAVKKVV
                     GVTRSIYGLMTAITRLGQVADTTADNVNRKNGKPSRLNPMNMLLAGSAIYAGYERLAS
                     TPERMEAQAKLPELAKESGLKPVFTMDDVKGWFSSAANKIANFQEPMNNFVNNTQSTP
                     PAITGDIVNSNAKLAMTISELSRKVDALTVEAKKPLSVNITGEATVRPDEPAFFTFNQ
                     SANDQFTQDMLLSSSYLEEE"
     gene            881..>1367
                     /locus_tag="OQQ76_004164"
     CDS             881..>1367
                     /locus_tag="OQQ76_004164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000640586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970412.1"
                     /translation="MICTNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVT
                     TQNMQSGQTVTDNVQRAPRTITISGVVVVGESGSILISRDNKLVENFIDTLESWRDQK
                     QIISVICKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDISAATG
                     KT"
BASE COUNT          461 a          242 c          278 g          386 t
ORIGIN      
        1 ttctttgatg aggtgacatt ggcttatcgt ggtttaaccg atgaacaaaa gaaagtagtt
       61 gatgctttag gttctggctt gattaatagc ttaaaagtct tggctggtgt tattgctgta
      121 aagaaagttg ttggtgtaac cagaagtatt tacgggctta tgacagctat cacaagatta
      181 ggtcaggtcg ctgatactac agcggataac gtgaatagaa agaatgggaa accatcaaga
      241 ctaaacccta tgaatatgct attagctggt agtgctatct atgcaggtta tgaaagatta
      301 gcttctacac ctgaacgaat ggaagcacaa gctaaattac cagagctagc taaagagtct
      361 ggacttaaac cagtgttcac tatggacgat gtgaaaggtt ggtttagtag tgcagctaat
      421 aaaattgcta acttccaaga accgatgaat aacttcgtaa ataacacaca atcaactcca
      481 ccagctatca caggtgacat agttaatagt aatgctaaac ttgcaatgac tattagtgag
      541 ctatcacgca aggttgatgc tttaacagta gaagccaaga agcccttgtc agttaatatc
      601 actggtgaag caactgttag accggatgaa ccagctttct ttactttcaa tcaatcagct
      661 aatgaccagt tcacgcagga tatgctctta agttcaagct atctagagga agaatgattt
      721 cttatatatc cgtgtgctac gtgaaatctt ctgaacagat atacccacgg aaaaatagaa
      781 tttacgtagc tcacgcttaa cagagaaaat acttatatat caaaggcttg gttaaaaatg
      841 attaaaatac actaagtctt tgaaatcaaa ggagaattta atgatttgca ctaatcagct
      901 tcgttacact ggcaaagatg gcgtttactt tcatctacaa ggccaaccag ataatttctt
      961 gtcactatca gcaactgaaa acatggaatt tgacagccct atgatggtta ccactcaaaa
     1021 tatgcaatca gggcagactg taacagataa tgttcaaaga gcacccagaa caatcactat
     1081 tagtggtgtg gttgtggttg gtgaatccgg tagtatcctt atctcaagag ataataagct
     1141 ggtggagaac ttcatcgaca ctcttgaaag ctggcgtgac cagaagcaga ttatttcagt
     1201 catctgtaaa gatggaatta aaattgatga ctccattatt acaagcttta aagcctctaa
     1261 agatgttgga atttctaatg gcctaagaat ccagctaact tttcaggaaa ttaacttcaa
     1321 agctattgtt ggtcaaacag atatttcagc agcaactgga aagacag
//
LOCUS       DAJVUN010000344         1355 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.350, whole genome shotgun sequence.
ACCESSION   DAJVUN010000344 DAJVUN010000000
VERSION     DAJVUN010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.350"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..1128
                     /locus_tag="OQQ76_004165"
     CDS             <1..1128
                     /locus_tag="OQQ76_004165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCS1970413.1"
                     /translation="VSAFQLAYTLGQPVMGFFIDTVGLKLSFAICAAIWGLATMGHAL
                     TGTWSGLAFMRALMGFSEASAIPAGVKTASTWFPAKERGVATGVFNMGTSLGAMLAPP
                     LIAWCIMFHSWQFAFIVSGSLALLAALFWFFCYKDPKDAKRLSDEERHYIESGQEQHL
                     KTDKKEKTSIKHILSQRNFWGIGIARFLADPAWGTINFWVPIFFVETLHFSLKEIAMF
                     VWLPFLLGDLGCLASGFVAKFFHDRGVSLINSRRITFTIAAVIMMTIGLVSIVENPYI
                     AVLLISIGAFSHQCLSTVAATLGGDLFKKDEVATAVGMAGACAWSGQLIFNLFIGAFV
                     HIIGFAPFFIALAFFDIIGAIALWTLIKVKDEEPQVQLATH"
BASE COUNT          315 a          301 c          319 g          420 t
ORIGIN      
        1 gtcagtgcat tccagttggc ctatacatta gggcaaccgg taatgggctt ctttattgat
       61 accgtgggtc tgaagttaag ttttgcgata tgtgccgcaa tttggggcct ggcgacaatg
      121 ggccatgcac taaccggaac gtggtctggt ctggcattta tgcgcgccct gatgggtttc
      181 agcgaagcgt cggcaattcc ggcgggtgta aaaaccgcat caacatggtt cccggcaaaa
      241 gagcgtggcg tggcgacagg tgttttcaat atgggcacct cactcggcgc gatgcttgct
      301 ccaccgttga ttgcctggtg cattatgttt catagctggc aatttgcgtt tattgtttca
      361 ggtagtcttg ctttgctcgc ggctttattt tggttctttt gttataaaga tccgaaagat
      421 gccaaacgcc tttctgatga agagcgccac tatattgaat cagggcaaga acagcatctt
      481 aaaacagata agaaagaaaa aacgtcaatc aagcatatcc tcagccaacg taatttctgg
      541 gggattggca tcgcgcgttt tctcgcagac ccggcatggg gaaccattaa cttctgggtg
      601 ccgattttct tcgtcgaaac gctgcatttt agcctgaaag aaattgccat gttcgtctgg
      661 ctgcctttcc tgctgggcga tctcggctgt ttagccagtg gttttgtcgc gaagttcttc
      721 cacgatcgcg gcgtgagttt aattaactca cgaagaatta ccttcactat tgcagccgtc
      781 attatgatga cgattggcct ggtgagtatt gtcgaaaatc cctacattgc cgtattactg
      841 attagtattg gcgcgttctc gcatcaatgt ctttctactg tagcagcaac tctgggtggc
      901 gatctgttca aaaaagacga agtagctacc gcagtgggta tggcaggagc ctgtgcgtgg
      961 agcggtcagt tgattttcaa cctgttcatc ggggcattcg ttcacattat cggcttcgcg
     1021 ccgttcttta ttgccctggc tttctttgac attattggtg ctattgcgtt gtggacgctt
     1081 atcaaagtta aagatgaaga accacaagta cagttagcta cccactaatt attttaaata
     1141 aaaacgctat aattgaggtt atggcgtttt taaagaagct tgagttatcg aacctcgctt
     1201 accaacgcgt tgtcagtcat ctcccccctc cctggtgcat cgttatatcc gtgatgagcg
     1261 atttttgata ttaatatctt tcaccatccg ctattttcac cacttcagaa aacaaactta
     1321 tttttattaa tatcaattct ttttctttga acatt
//
LOCUS       DAJVUN010000345         1348 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.351, whole genome shotgun sequence.
ACCESSION   DAJVUN010000345 DAJVUN010000000
VERSION     DAJVUN010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1348
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.351"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            221..1168
                     /locus_tag="OQQ76_004166"
     CDS             221..1168
                     /locus_tag="OQQ76_004166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001361319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HCS1970414.1"
                     /translation="MKNVLVTVPSFSARCVSASKLLRENNFNLIIKNNVEHLLKSEST
                     ALRESICAVIAGKDCYQADTLSLLPGVKIISRFRTGIDNIDLRAAQQSGIVVNNAVGI
                     NSNAVAEFIIGLIFASMRNIPGSYHAMQNGYWGESHGYELQGKRIGMVGYGNIGKTLA
                     KRLSGFDVELLAYDKQPDYQVADKVGVQFVSIEDIFMQSHVIIVLLPFSPELENFISH
                     KYLSMMRNGALIINAARGKLLDEGALLQVIEERNVFAALDVFSSEPLAQFSPLLHAKN
                     IITTPHIAAATVESYQQTGTHVAQSIIDYFAGREIKNVL"
     gene            complement(1247..1323)
                     /locus_tag="OQQ76_004167"
     tRNA            complement(1247..1323)
                     /locus_tag="OQQ76_004167"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1287..1289),aa:Met,seq:cat)
BASE COUNT          361 a          273 c          323 g          391 t
ORIGIN      
        1 taggtttagc accgtcatgc tcgtctactg ttgttctggt tgttggtgat gcggtggcgc
       61 ttgcactctc tgaattgaaa aaatttactc gtgctgattt cggcttatat catccaggag
      121 gtgcactcgg cattaaagca aattcataat ttcaaagtat aaatacagta accggtcacg
      181 ccatcttttg gggtggcgtt cattgaagtg agtgtcagct atgaaaaatg ttctggtcac
      241 cgtccccagc ttttcagcac gctgtgtttc cgccagcaag ttgctaagag agaataattt
      301 taatcttatt attaagaata atgtggagca tctgcttaaa tcagaatcca ctgcattacg
      361 agaatctatt tgcgcggtca tcgccggaaa agattgttat caggcggaca cgctatcatt
      421 gctgcctggt gtgaaaataa tatcgagatt caggacgggg atagataata ttgatcttcg
      481 tgcagcacaa caatccggta ttgtagtcaa taatgcggtt gggattaatt caaatgctgt
      541 cgcggaattt atcattggac ttatcttcgc gagcatgaga aatattcccg gcagctatca
      601 tgcgatgcaa aatggctact ggggtgagtc gcatggctat gaattacaag gcaaacggat
      661 tggcatggtt ggctacggca atataggtaa aaccctggca aaaaggttat ccggttttga
      721 tgttgagctt ttagcttatg acaaacaacc cgattatcag gttgctgaca aagttggagt
      781 tcagtttgta tcaattgaag atatctttat gcagtcgcat gtcatcattg ttcttttgcc
      841 tttttctcct gagctggaga acttcattag tcataaatat ttgtcgatga tgcgcaatgg
      901 tgctctaatc atcaatgccg caaggggaaa gttgctggat gagggcgctt tactacaggt
      961 gattgaagaa cgaaatgtgt ttgcggcgct ggatgtgttt agctctgaac cgttggcgca
     1021 atttagccca ctgctacatg ccaaaaatat cattacaacg ccgcatattg cggccgccac
     1081 cgttgagtca taccagcaaa ccggtacaca cgttgcccag tcgataattg attacttcgc
     1141 aggaagggag ataaaaaacg tgttgtgagt tcagcgaacg aagtttttaa atacaaaaaa
     1201 accgcaattt gtggaacaca ttgcggttta tcagcattct aagtattggt tgcgggggcc
     1261 ggatttgaac cgacgacctt cgggttatga gcccgacgag ctaccaggct gctccacccc
     1321 gcgtcaccgt actgctttat ttcatcaa
//
LOCUS       DAJVUN010000346         1347 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.352, whole genome shotgun sequence.
ACCESSION   DAJVUN010000346 DAJVUN010000000
VERSION     DAJVUN010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.352"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..1144
                     /locus_tag="OQQ76_004168"
                     /pseudo
     CDS             1..1144
                     /locus_tag="OQQ76_004168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415291.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="anion permease"
BASE COUNT          298 a          315 c          341 g          393 t
ORIGIN      
        1 cgtttacctt aagcgccgca tttgtgacca ccggtttagg taaacgtatt gcctatctgc
       61 tgattggtaa aatcggtaac accacgctgg gtctgggtta cgttacggta ttcctcgatc
      121 tggtactggc tccggcaaca ccgtctaaca ccgcgcgtgc gggcggcatt gtgttaccga
      181 tcatcaacag cgtggcggtg gctttggggt ccgaaccgga aaaaagtccg cgtcgtgtcg
      241 gacattacct gatgatgtcc atttacatgg tcaccaaaac caccagctat atgttcttta
      301 ccgcaatggc ggggaacatt ctggcgctga aaatgatcaa cgatattctg cacctgcaaa
      361 ttagctgggg tggatgggcg ctggccgccg gattgccggg catcattatg ctgcccggca
      421 atccgctggt aatttacacc atgtatccac cagaaattaa aaaggtggat aacaaaacca
      481 tcgctaaagc gggccttgcc gaactgggac cgatgaaaat ccgcgaaaaa atgctgctcg
      541 gtgtctttgt gctggcgcta ctgggctgga ttttcagtaa gtctctgggg gttgatgaat
      601 ccactgtggc aatcgttgtt atggcgacca tgctgctgct gggtatcgtt acctgggaag
      661 acgtggttaa aaataaaggc ggctggaata ccttaatctg gtacggcggt attatcggat
      721 taagctcctt attatcgaaa gttaaattct tcgaatggtt agctgaagtc tttaaaaata
      781 acctggcatt tgatggtcac ggtaacgttg ctttcttcgt tattattttc ctcagcatta
      841 tcgtgcgtta tttcttcgct tccggtagtg cctatatcgt tgctatgtta ccggtatttg
      901 ccatgctggc gaacgtctcc ggcgcaccgt taatgttaac cgcgctggca ctgttgttct
      961 ccaactccta tggcggcatg gttactcact atggcggcgc ggcaggtccg gtcatctttg
     1021 gcgtgggtta taacgatatt aaatcctggt ggtcggtgcg gtactgacga tattaacctt
     1081 cctagtgcat atcaccctcg gcgtgtggtg gtggaatatg ctgatcggct ggaacatgct
     1141 gtaaatattc tcgtcatact tcaagttgca tgtgctgcgt ctgcgttcgc tcaccccagt
     1201 cacttactta tgtaagctcc tggggattca ctcgcttgtc gccttcctgc aactcaaatt
     1261 atttagagta tatccattta ttatctttct gcgcacttca cggtgcgcag atatctggag
     1321 catttgatga tcaagttatc tgaaaaa
//
LOCUS       DAJVUN010000347         1335 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.353, whole genome shotgun sequence.
ACCESSION   DAJVUN010000347 DAJVUN010000000
VERSION     DAJVUN010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.353"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..568
                     /gene="envY"
                     /locus_tag="OQQ76_004169"
                     /pseudo
     CDS             1..568
                     /gene="envY"
                     /locus_tag="OQQ76_004169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308625.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator EnvY"
     gene            complement(614..690)
                     /locus_tag="OQQ76_004170"
     tRNA            complement(614..690)
                     /locus_tag="OQQ76_004170"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(654..656),aa:Arg,seq:tct)
     gene            933..>1335
                     /gene="fimZ"
                     /locus_tag="OQQ76_004171"
     CDS             933..>1335
                     /gene="fimZ"
                     /locus_tag="OQQ76_004171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria biosynthesis transcriptional regulator
                     FimZ"
                     /protein_id="HCS1970415.1"
                     /translation="MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDY
                     LRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANG
                     FVSKCNDQNDIFHAVQMILSGYTFFPSETLNY"
BASE COUNT          379 a          306 c          291 g          359 t
ORIGIN      
        1 attatctgtt gtttttaaat aagaacttaa cctgtgtaaa gccctggtcg cggctggcaa
       61 ccccggttat cacttgtcat agccgtacac cggaagtgtt ccggctagcc gccaaccaca
      121 gcaagcagca acccagcaaa ccctgcgaag cggagttgac gcgcgcatta ctttttaccg
      181 tattgtctaa ctttcttgag caatcgcggt ttattgccct actgatgtat atcttacgca
      241 gcagcgtccg cgacagcgtc tgccgcatta ttcaaagcga tattcagcat tactggaatc
      301 tgcgaattgt cgccagttcg ctatgtttaa gccccgcctg ctcaaaaaga aattaaaaaa
      361 cgaaaatacc agctatagcc agattgtcac agagtgtcgt atgcgttacg ccgtacagat
      421 gttattgatg gataacaaaa atatcactca ggtggcgcaa ttatgtggct atagcagcac
      481 gtcgtacttt atctctgttt ttaaggcgtt ttacggcctg acaccgttga attatctcgc
      541 caaacagcga caaaaagtga tgtggtgaag ggcaaagcgg aaacggataa gacgggcata
      601 aatgaagaag aaatggcgcg ccctgcagga ttcgaacctg cggcccacga cttagaaggt
      661 cgttgctcta tccaactgag ctaagggcgc gttgataccg caatgcggtg taatcgcgtg
      721 aattatacgg tcaacccttg ctgagtcaat ggcttttgat ctggttgctg aacaagtgaa
      781 cgaccgcgtc tgattttctg atttatttcg ctatagcggc aaacaaacgc acaccgctgc
      841 gcgtctgaat caagaaaacc cgtattttca tgtatcaaag tacaatttac cgccctaacg
      901 gaaaattgtc cgctcctatg agactggtaa ctatgaaacc aacgtcggtg atcattatgg
      961 atactcatcc tatcatcaga atgtctattg aagttctgtt gcaaaaaaac agtgaattgc
     1021 agattgtcct gaaaacggat gattaccgca taaccatcga ttatctccga acccgtcctg
     1081 ttgatttaat cattatggat atagacttgc ccggaacaga cggttttacc ttcctgaaaa
     1141 ggatcaaaca aatccagagc acagtgaaag tgttattttt atcatcgaaa tcagaatgct
     1201 tttatgctgg cagagcgata caagctggtg ctaacggttt tgtcagtaaa tgcaatgatc
     1261 agaatgatat ttttcatgcc gttcagatga tcctctccgg atacacgttt tttcccagcg
     1321 aaacgcttaa ctata
//
LOCUS       DAJVUN010000348         1292 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.354, whole genome shotgun sequence.
ACCESSION   DAJVUN010000348 DAJVUN010000000
VERSION     DAJVUN010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.354"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..376
                     /locus_tag="OQQ76_004172"
     CDS             <1..376
                     /locus_tag="OQQ76_004172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HCS1970416.1"
                     /translation="YPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTR
                     RSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALA
                     RRRCDVLFAMMRDGTFYTPQGS"
     gene            complement(747..1013)
                     /locus_tag="OQQ76_004173"
     CDS             complement(747..1013)
                     /locus_tag="OQQ76_004173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970417.1"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPATNRTKTLKFTATEMQWLTKINEVGIVEKQSQRHSNI"
     gene            complement(1195..>1292)
                     /locus_tag="OQQ76_004174"
     CDS             complement(1195..>1292)
                     /locus_tag="OQQ76_004174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970418.1"
                     /translation="VAIEHYNENHPHSALGYLSPREYRRQRVMST"
BASE COUNT          331 a          287 c          281 g          393 t
ORIGIN      
        1 ttacccggtc ctgaccagta tgcccggagt cggtgtcagg accgcagcca gactcctcac
       61 cgaggtcgcc tgccgcgcct tcgcctctgc cgcacatctc gctgcttatg ctggccttgc
      121 gccggtaact cggcgatccg gctcgtcaat acgcggtgag catccctcgc gacggggtaa
      181 taaagctctc aaacgggcgt tgttcctgtc ggccttcgcc gcgctcaggg atccgctctc
      241 cagggcttac tacacccgca aaatgagtca gggaaaacga cacaatcagg cgcttatcgc
      301 cctggcgaga cgacgctgcg acgttctgtt cgccatgatg cgcgacggga ctttttatac
      361 cccgcagggg tcataacatg cttgacaact taatagggcc cccccccaaa gccgtctatg
      421 ggaaggagtc tgctgttatt ccagagaatg gtaattcagt catatatttc tccatctatg
      481 acttgtcaat accatcctga tatttgtggg tcagcaatat attctactaa aaggtattta
      541 aggtcattgc gtccctgcac tcgaataatg gtgaagaaag catgatgaat atatcacgat
      601 aacgttcagt atgtatcgag gatagatgga gttactcctc tctgaaatag aattactgct
      661 ctactttttc tgtttccaga aattattagt aacaaaccct gatatattct tttgaaaatg
      721 gagcttaaac gagcctgaaa ttaacttcag atattagaat gccgttggct ttgtttttca
      781 acaattccta cttcatttat ctttgtcaac cattgcattt ctgtagcagt gaatttcaac
      841 gttttcgtcc ggttggtagc aggtatttgt aattcgtata tagctgcttt tttattgaaa
      901 acagtatatc catctgtagt aacagtagaa gataataata caggatttga cacttcaagg
      961 atgatatttt cttgtttttg tggaaggcaa gggaatatag tttgtgtaag catattgctt
     1021 ccttatgtta tattttagta aagaatttat tttttacatt atagtcggct aaatgaagtt
     1081 tactgtaaaa aaacgatact tttttcgtaa gcgatgagat gtggagccag aaaaatggct
     1141 gcgttatgtc attgaactgt ccttgaccca cgatattcag acagtcgttg tatcttaagt
     1201 tgacattacc cgctgacgtc gatattccct tggtgagaga taacccaacg cactatgcgg
     1261 atggttttca ttgtaatgct cgatcgccac tg
//
LOCUS       DAJVUN010000349         1287 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.355, whole genome shotgun sequence.
ACCESSION   DAJVUN010000349 DAJVUN010000000
VERSION     DAJVUN010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.355"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            86..412
                     /locus_tag="OQQ76_004175"
     CDS             86..412
                     /locus_tag="OQQ76_004175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003878599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HCS1970419.1"
                     /translation="MTTLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAV
                     EHLRALEKKGVITIKRGVARGITLHTAVKDDDSEAVGIIRSLLAGEENARLRATHWLH
                     ERGLKV"
     gene            409..798
                     /locus_tag="OQQ76_004176"
     CDS             409..798
                     /locus_tag="OQQ76_004176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000767134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HCS1970420.1"
                     /translation="MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAI
                     VEQLRRLPKPTSAPASVEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDRQVKRML
                     VEWGPVIPKGKVEITISKYEKPAGAAA"
     gene            818..>1287
                     /locus_tag="OQQ76_004177"
     CDS             818..>1287
                     /locus_tag="OQQ76_004177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001061418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HCS1970421.1"
                     /translation="MNNLMVIDGIEVRRDAYGRYSLNDLHRAAGGEQKNRPKYWLSNK
                     QTCELIEQLFTEGGIPPLEQNQPVSVINGGNNQGTYVCKELVYAYAMWISPSFHLKVI
                     RTFDMVTSAPEKLSGQAADKMQAGVILLDFMRRELNLSNSSVLGACQKLQEAVG"
BASE COUNT          328 a          296 c          392 g          271 t
ORIGIN      
        1 ggcgcgatga acttgaggca tgtggtgagg cgtttctggc gcaggttcgc ctgcaggcgg
       61 aaaagctggt cagggagatg gcggcatgac gacgttaact caatgccagc agcaggtgct
      121 ggatatgctg atttcttatc agaaagagcg tggcttcccg ccaaccaatc aggaggtggc
      181 aaccatgctg ggataccgtt cggtgaatgc agcggtggag catcttcgcg cactggagaa
      241 aaaaggcgtc atcacgataa agcgtggtgt ggcccggggg atcacgcttc ataccgcggt
      301 gaaggacgac gacagcgagg cggtcgggat tatccgctca ctgcttgccg gtgaggaaaa
      361 cgcaaggctg cgtgcaactc actggttaca tgagagaggc ctgaaagtat gaagctgatc
      421 ctgcctttcc cgcccagcgt gaacacctac tggcgacacc ccaacaaagg ggcatttgct
      481 ggtaagagcc tgataagcgc ggcggggcga aaatttcaga gcgcggcgtg cgcagcaata
      541 gttgagcagt tacgtcgtct gccaaaacca acgtcggcac ctgcttcagt ggagatcgtg
      601 ttgtttcctc cggataaccg gatccgcgat ctggacaact ataacaaggc gctgtttgac
      661 gccctgaccc acgcgggtgt gtgggaagac gacagacagg tgaaaagaat gctggtggag
      721 tggggaccgg ttatcccgaa agggaaggtc gagatcacta tcagtaagta tgagaaaccg
      781 gcgggtgcag ccgcctgatt aagaggagaa acgaagtatg aataatctga tggttattga
      841 tggtattgaa gttcgtcgtg atgcttatgg gcgttacagc ctgaacgatc tgcacagggc
      901 agccggggga gaacaaaaaa accgcccgaa atactggctc tccaataagc aaacctgtga
      961 attgattgaa caacttttca ccgagggtgg aattccgcct ctggaacaaa atcaaccagt
     1021 tagcgtcatt aatggcggaa ataaccaggg gacgtatgtc tgcaaagaac tggtgtatgc
     1081 ctatgcaatg tggatcagcc cgtcattcca tctgaaggtg atccgtactt tcgatatggt
     1141 aaccagcgca ccggaaaaat tatccgggca ggctgctgac aagatgcagg ctggcgtgat
     1201 cctgctggac tttatgcgcc gggagttaaa tctgtctaac tcatcagtgc ttggtgcctg
     1261 tcagaaactt caggaggctg ttggctt
//
LOCUS       DAJVUN010000350         1282 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.356, whole genome shotgun sequence.
ACCESSION   DAJVUN010000350 DAJVUN010000000
VERSION     DAJVUN010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.356"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..665)
                     /locus_tag="OQQ76_004178"
     CDS             complement(<1..665)
                     /locus_tag="OQQ76_004178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc22 family transposase"
                     /protein_id="HCS1970422.1"
                     /translation="MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQL
                     DKLRRMNFGSRSEKVSRRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPF
                     PESLPRDEKRLLPAASCCPECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQC
                     DAIVQAPAPSRPIERGIAGPGLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSG
                     WVDA"
     gene            complement(714..1061)
                     /gene="tnpB"
                     /locus_tag="OQQ76_004179"
     CDS             complement(714..1061)
                     /gene="tnpB"
                     /locus_tag="OQQ76_004179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004966400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1970423.1"
                     /translation="MIPLPSGTKIWLVAGITDMRNGFNGLAAKVQTTLKDDPMSGHVF
                     IFRGRNGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTPAQLAMLLEGIDW
                     RQPKRLLTSLTML"
BASE COUNT          254 a          372 c          375 g          281 t
ORIGIN      
        1 gcatccaccc agcccgacag cagtgaacga ctcagctcca cgccctggcg gccgtacatt
       61 tcagactggc ggtacagcgg ggtgtgctct gcatactttg agatcagcac gcgggccagc
      121 agccccggtc ctgcgatacc ccgctcgatg ggccgtgaag gcgcgggggc ctgcacgatg
      181 gcatcgcact gagtacaggc atgcttttca cgtacagtcc ggataacccg gaagacgctg
      241 cgcatcaact ccagctgttc ggcggcatcc tcacccagat agctcagtga gcctccacat
      301 tccgggcagc atgacgctgc cggcagcagc cgtttttcat cgcgggggag tgattcgggg
      361 aacggtttgc gggtgcgggt ttgacgcagc gggcgctgca cggccgggtc gtcaacccga
      421 ccggtaaggg tatcactttc tttctgaagt gccttcaggt cagcttccat ctgtgcgata
      481 cgacgggaga ctttttcgga gcggctgccg aagttcatcc ggcgcagctt atccagctgt
      541 gcctgcagat ggtctatttc gcgttcacgc tcgttcagct tttccagcag ggcacggttc
      601 agcgcctcct gttcggcaag gagacgtttc agtgcattga tatcgtcagg aagtgagctg
      661 ctcataccgg gtatattacc aggctcattc agcgtcgacc aggataaaga ggcttacaac
      721 atagtcaggg acgtaagcag tcttttaggc tgccgccagt cgataccttc aaggagcatc
      781 gccagctgtg ccggtgtgag gaacactttg ccatcccggg ctgacggcca ggcgaagcgg
      841 ccgcgctcca gccgtttggt cagcagacac agtccatcgc cggtagacca gaggagcttt
      901 acctgactgc cattacgccc acggaagata aaaacgtgac ctgacatcgg atcgtctttc
      961 agcgtcgtct gcacctttgc cgccaggccg ttgaagccat ttctcatatc ggtgataccg
     1021 gcaaccagcc aaattttggt cccggaaggt aacgggatca tcgcttcagt tcctgtatca
     1081 gcagagtcag gagcttttcg ctgacattgc cattgaagcg gagcgtcccg tgccggaacg
     1141 ttacctcaca gctgatactg agggtttccg gatcctctgc gagcgattct ggctgttcgg
     1201 cagctgcatc gagagtcaca ggaagtagct gggggctctc tgaagaaggt aatagcagct
     1261 ttccctcgcg ccattgttgt cg
//
LOCUS       DAJVUN010000351         1280 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.357, whole genome shotgun sequence.
ACCESSION   DAJVUN010000351 DAJVUN010000000
VERSION     DAJVUN010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.357"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..249)
                     /locus_tag="OQQ76_004180"
     CDS             complement(<1..249)
                     /locus_tag="OQQ76_004180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000741720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HCS1970424.1"
                     /translation="MAAVILRKVEKIYDNGFKPVHGIDLDINDGEFMVFVGPSGCAKS
                     TTLRMIAGLEDVSGGEIYISDRLVNTLPPKDRSIAMVFQ"
     gene            complement(332..757)
                     /locus_tag="OQQ76_004181"
     CDS             complement(332..757)
                     /locus_tag="OQQ76_004181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosidase"
                     /protein_id="HCS1970425.1"
                     /translation="MANYREIIFLSKAYTRYSECNLPDVNERGPIAAGLYISGTLPEG
                     YWLMKPERKMHYKGDGIYQLIYSEKAGAVTMQFATMNWNPQFTVTGLELPLNQAKTLK
                     KGGMDKNTKVVIPADGKYVWTIQIGPDKKAIAAMVAPCK"
     gene            716..1132
                     /locus_tag="OQQ76_004182"
                     /pseudo
     CDS             716..1132
                     /locus_tag="OQQ76_004182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000582547.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
BASE COUNT          382 a          238 c          249 g          411 t
ORIGIN      
        1 ctggaacacc attgcaatgc tgcgatcttt aggcggaagg gtattaacaa ggcggtcgct
       61 aatgtaaatt tcaccacctg atacgtcttc aagacctgca atcatgcgta atgtagttga
      121 tttggcacac ccagatggtc caacaaaaac catgaattca ccatcgttta tatcgagatc
      181 aatgccgtga acaggtttga atccattgtc ataaattttt tcaactttgc gtagaattac
      241 cgcggccata atctgctctc attaacaaga attttggaat actgatactc cactattcaa
      301 cgaatgttga atagtggagt gctaaaaata actatttaca tggtgctacc atggcggcta
      361 ttgccttttt atcaggacca atttgaatcg tccaaacata ctttccatcg gcaggaatga
      421 cgacttttgt atttttatcc atgcctcctt tcttgagtgt tttagcctga tttaatggca
      481 attcaagacc tgttacagtg aactgcggat tccagttcat agtcgcaaat tgcattgtta
      541 ccgcacctgc tttttcagaa taaataagct gataaatacc atctccctta taatgcattt
      601 tacgctctgg cttcattaac caatagcctt ccgggagggt tccggaaatg taaagacccg
      661 cagcaattgg ccctctttca tttacatcag ggaggttaca ttctgaatag cgagtatacg
      721 ccttgctcaa aaatatgatc tcccggtagt tagccatact tctaatgatt atgaatccag
      781 cccacagtta ttttatgaga tggcacttaa gtatccagac gtgaattttg ttatgtgtca
      841 tatggggctc gcgacagata atcaggaagc aatcgaattg attgcaaaac ttcctaatct
      901 ctatggcgat actgtgtggg ttagggcgga tatggtttac caggcgataa aaatctgtgg
      961 tagtgataag attttattcg gtaccgataa tcctattaat gggctggata cgtacaatga
     1021 tgatgatttt tataataagt attttactga attaaaaagt aaattaacgc aaagtgagtt
     1081 tgaacaactt atgtttacca atgcgaaaaa aaattttaag ataaaaatat agttattagt
     1141 catttctaag tgctccccat atagaatgtg gtaggggagt gcttagatgt tatatttcat
     1201 tttgcattga ggttaattta aatcatgaac gatattgaga actatgggaa tcgctatcat
     1261 gtgttgcaat cttttcctat
//
LOCUS       DAJVUN010000352         1261 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.358, whole genome shotgun sequence.
ACCESSION   DAJVUN010000352 DAJVUN010000000
VERSION     DAJVUN010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.358"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..1261
                     /locus_tag="OQQ76_004183"
                     /pseudo
     CDS             1..1261
                     /locus_tag="OQQ76_004183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT          253 a          391 c          416 g          201 t
ORIGIN      
        1 aaccgacatc gccctgcccg gcccgctgcc gttcatcctc tcccgcacct acagcagtta
       61 ccggacaaaa acgcccgcgc cggtggggag cctcggcccc ggctggaaaa tgcctgcgga
      121 tatccgctta cagctgcgcg ataacacact gatactcagt gataacggcg gcagaagcct
      181 gtattttgag cacctgtttc ccggtgagga cggttacagc cgcagcgagt cactgggctg
      241 gtgcgcggcg gcgtggcgaa actggatgaa ggtcaccggc tggccgcact ctggcaggcg
      301 ctgccggaag aactccgctt aagtccgcat cgttatctgg cgacaaacag tccgcagggg
      361 ccgtggtggc tgctcggctg gtgtgagcgg gtgccggaag cggatgaggt gctgcctgcg
      421 ccgctgccgc cgtaccgggt actgaccggg ctggtggacc gcttcgggcg cacacagacg
      481 ttccaccgcg aagccgccgg tgaattcagc ggcgaaatca ccggcgtgac ggatggtgcc
      541 gggcgtcact tccaactggt actgaccacg caggcgcagc gggcagaaga agcccggcag
      601 caggccattt ccggcgggac ggaaccgtcc gcttttcctg ataccctgcc gggttacacc
      661 gaatatggcc gggacaacgg catccgtctg tctgccgtgt ggctgacgca cgacccggaa
      721 tacccggaga atttacctgc cgcgccgctg gtgcgctatg gctggacgcc gcgcggcgaa
      781 ctggcggcgg tgtatgaccg tagtggcaaa caggtgcgca gctttactta cgatgataaa
      841 taccggggcc ggatggtggc gcaccgtcac acgggccggc cggaaatccg ttaccgttac
      901 gacagcgacg ggcgggtgac agaacagctt aacccggcag gcttaagcta cacgtatcag
      961 tatgagaagg accgcatcac catcaccgac agcctgaacc gccgtgaagt gctgcacacg
     1021 cagggtgaag ccgggctgaa gcgggtggtg aaaaatcacc cggagacgga agcactgctc
     1081 tggcagcatg agaccagaca tgcgtacaac gcgcagggac tggcgaaccg ctgtataccg
     1141 gacagcctgc ccgccgtgga atggctgacc tacggcagcg gctggctggc aggtatgaag
     1201 ctcggcgaca caccgctggt ggatttcacc cgcgaccgcc tgcaccggga aacgctgcgc
     1261 c
//
LOCUS       DAJVUN010000353         1251 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.359, whole genome shotgun sequence.
ACCESSION   DAJVUN010000353 DAJVUN010000000
VERSION     DAJVUN010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.359"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..1251)
                     /locus_tag="OQQ76_004184"
                     /pseudo
     CDS             complement(1..1251)
                     /locus_tag="OQQ76_004184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246439.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT          371 a          353 c          279 g          248 t
ORIGIN      
        1 ccaaccagta aaacgcttca gttttcaacg caccccacag catcggccag aaaatgagtc
       61 ctgcaattgc ccctgtgcgc ataatagcgc gggcaaatcc gaccccagta gggcgaatag
      121 cgggaagata agagagtgtg gcaatggtca tgcccagccc accaggaccc gctgaatgga
      181 agaaaataat tgatcccaat aaccctaaag acagccaggg attagtcgtt gccagtgcgc
      241 cgaacgacag caatgctaag gtcacaacag caaatccata catcgactgt cggcgagtac
      301 ccagtcgttg gagaataaac gagccgatca tcccgcctgt caccccacaa agggcattca
      361 cgacggcaga accggtcaac gcgccagtaa gcccgccact tattattccc gccaacgtaa
      421 gaggaagata aacacctacg gcgttatatt gccacgcctg catggttgcc acgacacagc
      481 caagaatggt gcgtttgcgg taacgatcat taaataagat gccatatcca ccactgtatt
      541 tattctctgc tttttccgag aatttcgctt ctgttgtacc cgatgccgca acgcgagcct
      601 gaacaccata acgttttccc agaatgtcgc acgcttcctg gtaacgcccg acgcgtgcgg
      661 cccacattgc ggattcacca ataaagaagt aacgcaaaat catgaagatg actgcaaaaa
      721 tagctccgat gaatattccg taacgccaca attgttcttc agcgataccc gacagaagca
      781 gcggcaaaag taccaaataa acaacggttg tcgaaacata ccaggccatt tgccagaggt
      841 tgaccgacgt tccggttttc ttcgacgttg aaccacgaag ctctgccacg gcattggttg
      901 ccaaagggaa gtcgatgcct aaaccaaagc ccatgatgac gcggcacacc agcacccacc
      961 agatactggg agcaatagct accgctgcaa caccgatggt gcacagcccc atgccaataa
     1021 taaatgcccg cttttgccca aagcggttta ttactcggtt cgctaataaa ccgccaatta
     1081 acgcagcgat taatactgat gcattgacgg ttgcagcaag acccggcgaa atgccgaatt
     1141 gagcggcaat gtatttatta ccaaacccca ccatcgccgc ctagtaggca tcaatcaata
     1201 tgccgcccaa agcaataaaa ataacgccga tactggtgtt gattgcagag t
//
LOCUS       DAJVUN010000354         1248 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.360, whole genome shotgun sequence.
ACCESSION   DAJVUN010000354 DAJVUN010000000
VERSION     DAJVUN010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1248)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1248)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.360"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..204
                     /locus_tag="OQQ76_004185"
     CDS             <1..204
                     /locus_tag="OQQ76_004185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HCS1970426.1"
                     /translation="ESEALLGFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQHYANAD
                     YLPQRRIMHRVTILGDKPFYRAG"
     gene            complement(310..>1248)
                     /gene="hemB"
                     /locus_tag="OQQ76_004186"
     CDS             complement(310..>1248)
                     /gene="hemB"
                     /locus_tag="OQQ76_004186"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HCS1970427.1"
                     /translation="KSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRI
                     PEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMI
                     VMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQV
                     QAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKSYQMNPMNRREAI
                     RESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAI
                     DEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR"
BASE COUNT          283 a          346 c          326 g          293 t
ORIGIN      
        1 gagagcgaag ccttgttagg ctttttattc gcccatatca ctaaaccgga gtttcaggtg
       61 cgttggcgct ggcaaccgaa tgatattgcg atttgggata accgcgtgac tcagcactat
      121 gccaatgccg attacctgcc acagcggcgg attatgcatc gggtgacgat tcttggggat
      181 aaaccgtttt atcgggcggg gtgatacgag tgcggacggt tccctcgccc ccttggggag
      241 agggttaggg tgagggggcg ttcaccgtac tttcaacagg ttaactcccc ctttctgaga
      301 ggaaaaaaat taacgcagaa tcttcttctc agccaaatcc agcgcaaagt agctgaaaat
      361 cagatccgca cccgcacgct taattgaacc taagctttcg agcacgactt tctcttcatc
      421 tatagcaccc gccagcgcgg cgaacttaat catcgcgtac tcaccgctca cctgatacgc
      481 gccaatcggc aattcagtac gttcacgcag ctcacgcacg atgtcgaggt acgctccagc
      541 aggtttaacc atcaggcagt ctgcgccctg ggcttcatcc agcagtgact cacgaatcgc
      601 ctcgcgacgg ttcattgggt tcatctgata gcttttgcgg tcgcctttta atgcgcttcc
      661 ggcagcttca cggaacgggc cataaaagga agaggcgaac ttggtcgaat acgacataat
      721 cgccgtatct ttaaagcctg cagcgtccag cgcctgacga atcgcctgta cctggccgtc
      781 catcgcggcg gaaggggcga tgaagtctgc gcctgcagca gctgcaacca cggcttgctt
      841 gcctaaattt tccagagtcg cgtcgttgtc gacgccatgc tcgcacagca caccgcagtg
      901 accgtgagaa gtgtattcac agaaacaagt gtctgacatg acgatcattt ctggcacagt
      961 ctgcttgcag atgcgcgaca tacgcgccac cagtccatct tcccgccagg cgtcgctgcc
     1021 ggtttcatcg gtatggtgag agatgccgaa agtcatcacg gaacgaatac cggcgttggc
     1081 gatgcgttca atttcgcgtg ccagatgttt ctctggaatg cgcatcacgc ctggcatggc
     1141 ttcaacggct ttgtagtcgt caatttcttc ttcaacaaag atcggcaaca ccaggtcgtt
     1201 aaggctaagt gttgtctctt caaacatagc gcgcagcgca ggagattt
//
LOCUS       DAJVUN010000355         1241 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.361, whole genome shotgun sequence.
ACCESSION   DAJVUN010000355 DAJVUN010000000
VERSION     DAJVUN010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1241
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.361"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..481)
                     /gene="ospG"
                     /locus_tag="OQQ76_004187"
     CDS             complement(<1..481)
                     /gene="ospG"
                     /locus_tag="OQQ76_004187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector protein
                     kinase OspG"
                     /protein_id="HCS1970428.1"
                     /translation="MKITSTIIQTPFPFENNNSHAGIVTEPILGKLIGQGSTAEIFED
                     VNDSSALYKKYDLIGNQYNEILETAWQESELFNAFYGDEASVVIQYGGDVYLRMLRVP
                     GTPLSDIDTADIPDNIESLYLQLICKLNELSIIHYDLNTGNMLYDKESESLFPIDFRN
                     "
     gene            complement(510..736)
                     /locus_tag="OQQ76_004188"
                     /pseudo
     CDS             complement(510..736)
                     /locus_tag="OQQ76_004188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001585073.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(733..1002)
                     /locus_tag="OQQ76_004189"
     CDS             complement(733..1002)
                     /locus_tag="OQQ76_004189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970429.1"
                     /translation="MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
                     HNSWFRDQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIADK"
BASE COUNT          329 a          306 c          254 g          352 t
ORIGIN      
        1 tattgcgaaa atctattggg aataaacttt cactttcttt atcatatagc atattacctg
       61 tattaagatc gtaatggatt atactcaact cattcaattt acatatcaac tgtagataaa
      121 ggctctctat attatcaggg atatcagctg tatcaatgtc actaagggga gtcccaggca
      181 cgcgcagcat tcggaggtac acatctccgc catactgtat aacaacggat gcttcatcgc
      241 cataaaaagc attaaaaagc tcagattctt gccaagccgt ttccagaatc tcattgtact
      301 ggttgccaat aagatcatac tttttataca aagcagatga atcattcaca tcttcaaaga
      361 tttctgctgt cgacccctga cctattaact taccgagaat gggctccgtt actatgccag
      421 catgagaatt attattctca aatggaaaag gtgtttgaat aatggtagat gttattttca
      481 tgtcatacct ttgttacgat atttaaaaat cacaagagat tttcacacaa aataacgtta
      541 cacgctacct tgtgtggtcc agatgttcct tccacacgac cgttgcggcc tttatacggc
      601 tgccctgcca ggctgctggc tgaataacca atccgttcgt ccggttcaat ggcggccatc
      661 aggttctgct ccgcaatgta ctacgaatgc gcttcctgtc ctggatggcc agcatggtcc
      721 agaacatctc catcatttat cagcaatctt cctgctcatt tcatcccgcc atgcagcagc
      781 agaggattcg accatgtcat ggggaagcac atcaccgcat tcgagttgct gacggcctgc
      841 cgcaacctgg tcacggaacc aagaattgtg ctgccgttca acggtctggc gcataaaatc
      901 ccggattaac tgagagccat tacggtccat gctttttgca gcggccataa aagcatcctt
      961 cagttctgcg tcgattctta cactcatatt aacctgtgcc atttgccacc tcgtcattac
     1021 cacgtatata cacagtatat aactgttcag atatcgtcac caggatatgc cgcgccagcg
     1081 gcatgtaagg cggcactccg ttgttgcata tggcagagga gtaaaaccgc cgaagcccgg
     1141 cgtaagccgg tacgtattga caggtttcac ctgtcctatc actggcgctg acagttttat
     1201 gcgatgtgat tatgaatggt gcagttgtga gccgttttca g
//
LOCUS       DAJVUN010000356         1226 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.362, whole genome shotgun sequence.
ACCESSION   DAJVUN010000356 DAJVUN010000000
VERSION     DAJVUN010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.362"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(865..1146)
                     /locus_tag="OQQ76_004190"
     CDS             complement(865..1146)
                     /locus_tag="OQQ76_004190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970430.1"
                     /translation="MTESEILRLIRRACGISKQHDEQATQPDSVTADNYVRVVAEVMR
                     RDGIELNGVDMRNIRTRVLELLAYRRRSQQRRESAKNTYQWKKPERLRR"
BASE COUNT          291 a          300 c          276 g          359 t
ORIGIN      
        1 ccggcgatat attcaaaggc cttttcggta tcaaggtcac tttcaatcgt cgctgcatac
       61 atcgccttta tgaaaagaca ggaaaaaata aaatttaaaa acagtacatt acgaatgctc
      121 agacctatcg tttaaaggag tcgcaataca cactgcaata cacgattatt tataagatga
      181 gcggcatccg tcataaagct ggtggatgct ttttctatgc atatatgcac agttttagtg
      241 ggcgttaatg tcgatatagg gatccccata tcgagattgg ataccaggct tttttaatca
      301 ggctggtggg ctttacctgt tttgtatgag tggtcatcat gaccatgtca taacaaaaac
      361 cccatattcg tggtttttct gtgtcgggct attctgtcgt tgctgtgctg atttggctgg
      421 tgggctgaat catcattacg gcgatgcagc tatgtagacg ttccggcctc ctcaaattga
      481 ggattgtgga agaatcaatg ggttagtctt actttcccga catcccccaa tggggggttt
      541 cgaaacaatc aatagcttag gcttacttcc ccgatttcct gcattgcagg ttttcgaaat
      601 aatcaatggg ttaggccatc gtgcaatttt gcactttgcc agccagcgca atgtcgcgtt
      661 atcagtcctc agatgtgagg gatgtagcca gcttttcccc cagtggggga tatccagcac
      721 cgacggctta actgtgcgtg ccagcacaag gtagccttga actacttact gcatcccatc
      781 ttacaggccg tgccttcctg cttaactttt tgcaatgcaa caagtcagcc agcgcaattt
      841 tgcgttatcg ggaatatcag caagttaccg ccgcaatcgt tccggcttct tccactggta
      901 agtatttttc gcgctctccc tccgttgttg agaacggcga cgatatgcca gcaactcaag
      961 gactcttgtt cgtatgttgc gcatatccac gccgttaagc tcaataccgt cacggcgcat
     1021 cacctcagcc actacacgca cataattatc tgcggtcacg ctgtccggct gcgtggcctg
     1081 ttcgtcatgc tgcttgctga ttccacaagc acggcggatt aatcgcagta tttcggattc
     1141 agtcatagcg tactacgtta cttatcttta ttcggctgca acttatccgg tacgtttccg
     1201 gcagtttcca tcagataatc ggacag
//
LOCUS       DAJVUN010000357         1209 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.363, whole genome shotgun sequence.
ACCESSION   DAJVUN010000357 DAJVUN010000000
VERSION     DAJVUN010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.363"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..937
                     /locus_tag="OQQ76_004191"
     CDS             <1..937
                     /locus_tag="OQQ76_004191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS1970431.1"
                     /translation="RQGVELSRALLSNWVDACCQLMTPLNDALYRYVMNSRKVHTDDT
                     PVKVLAPGRKKAKTGYIWTYVRDDRNAGSPEPPAVWFAYSPDHQGKHPEQHLSPFRGI
                     LQADAFNGYDRLFSAEREGGALTEAGCWAHARRKVHDVYISTKSATAEEALKLIGELY
                     AIEHEIRGLPVSERLAVRQMQSKPLLTSLYKLMQEKEHTLSKKCRLRDAFRYIRKHWV
                     ALCNFSDDGLAEADNNAAERALRAVCLGKKNFMFFGSDHGGERGALLYGLIGTCRLNG
                     IDPEAYLRYILSVLPEWPSNRVDELLPWNVALTNK"
BASE COUNT          288 a          302 c          344 g          275 t
ORIGIN      
        1 ccgtcagggt gtcgaactga gccgtgcatt actctccaac tgggttgacg cgtgctgcca
       61 gttaatgacg ccgctgaatg atgctctgta ccgttatgtg atgaacagcc gcaaagttca
      121 cactgatgac acaccagtaa aagtgctggc accgggcagg aagaaggcga aaacaggata
      181 tatctggacg tatgtccggg atgacaggaa tgccggttcg ccagagcctc cggcggtctg
      241 gttcgcctac tcaccggacc atcagggtaa acatccggag cagcacctta gtcccttccg
      301 gggtatcctg caggcagatg cgtttaatgg ttacgatcgg ctgttcagtg ccgaacgaga
      361 aggcggcgcg ttgacggaag caggatgctg ggctcatgcg cggcgcaaag tccacgatgt
      421 atatatcagt accaaaagcg cgacagcgga agaagccctg aaactaatcg gtgagctgta
      481 cgccatcgag cacgaaatac gcgggttgcc ggtgtctgaa cgcctggcgg tcaggcaaat
      541 gcagagtaaa ccgctactga cttccctgta taagctgatg caggagaaag aacacacgtt
      601 atcgaaaaaa tgccgtctga gagatgcgtt ccggtatatc aggaagcact gggttgcgtt
      661 gtgcaacttc agtgatgatg gtctggctga ggcggataat aatgccgcgg aaagagcgct
      721 tcgtgcagtc tgtctcggaa agaaaaactt tatgttcttc ggcagcgatc acggtggaga
      781 gcgtggtgcg ctactgtacg ggctgatcgg cacctgccga ctgaacggta tcgatccgga
      841 agcgtatctg cgctatatcc tgagcgtact gccggaatgg ccttccaacc gtgttgacga
      901 actcctgcca tggaacgtag cactcaccaa taaataagcg tcaatacggt gctccgttga
      961 cgctgatatg actttccgtg tcaaaccgga atctctaatt ttgacgattt tctttttagg
     1021 tttaattccc tgagggcgac gtagcagtaa atccgacggt gaatcacgct gatattcgcg
     1081 ggttggatac cgcattacag aggtccgtca tatgagcctg ccactttctt acgtcgcgaa
     1141 tcagctttgt tccgccgtcg ccaagcgcta acgtgggtta ctcttgtacc gggctacgtc
     1201 gccttcagg
//
LOCUS       DAJVUN010000358         1199 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.364, whole genome shotgun sequence.
ACCESSION   DAJVUN010000358 DAJVUN010000000
VERSION     DAJVUN010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.364"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ76_004192"
     CDS             complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="OQQ76_004192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH4.5"
                     /protein_id="HCS1970432.1"
                     /translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
                     TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
                     LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
                     LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQRLKYLKVGENQLRRL
                     SRLPQELLTLDVSNNLLTSLPENIITLPICTNV"
BASE COUNT          341 a          215 c          260 g          383 t
ORIGIN      
        1 ttaacattcg tacaaatggg caatgtgatt atattttcgg gtaatgaagt tagtaggtta
       61 ttggaaacat ccagtgtcaa tagttcttgc ggtaatctgg ataatctgcg tagttgattt
      121 tcacctacct tcaaatattt taagcgctga ggaaattctg gtagttcctg tagtctgttg
      181 ccggaaacaa agagttcttg tagtctatga ggcaattcag gcaagacagt aaggcgatta
      241 ccttcaatac gtaatattgt tagcgttgat ggaagctctg gtaacgtctc cagactatta
      301 aaacgtgccg agagtgattg taaatatggt ggtaatgatg gcagacatga caaatttcga
      361 ttgaatgaaa tattaagctt aatcagttga gatggaagtg tcgggagtat attcaagttg
      421 ttaccattta catgaagttc tgtcaaaagc ggagaatttt caggtaggga gattaactca
      481 ttgttggaaa tattaagttc acgtatatgc aaagggagtg gtggtaaaga acgtagtttc
      541 agtaagctta aattgagaac aggctcccgg gtatccagac atattttcaa taatcgaacc
      601 gcctggatgc gattttctgt tgttgttcct tccctagccc agtcatccca gatgcggtgg
      661 taatctctgg tacactgttc ttctaccgat aaacgagata tacatgataa gccacaaagg
      721 gaacgaaaaa aagaatgatt gttgatcggt ttcatttatt aacccctcac tattcatatc
      781 ttggtctatt aatgcaaata aaacgagaaa gtctttaaaa agacaatcct agagctctat
      841 cggcgttttc attccagctg gaggaatatg ttcctgtctt tccagtaacc gtcgattgtt
      901 atatcagtct acccatgtta atgggaccag ttctactttc atccagtttg gattgatctt
      961 tatcccctat attttcaaac aatttttatc atttaactca ttactgtctc gatattccca
     1021 tagcaaacga tctggttggt tagcccctca aaaaagtcag ttgcacgccg taaatccctg
     1081 ccggtattga gcgaggattt acgggttgtt gttaagatcc gtaatcgggt cacagttttt
     1141 ccggagtcaa tccggtctgc ggtttatgct tatgcgacgt gattatgaat ggtgcagtc
//
LOCUS       DAJVUN010000359         1193 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.365, whole genome shotgun sequence.
ACCESSION   DAJVUN010000359 DAJVUN010000000
VERSION     DAJVUN010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.365"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(36..1178)
                     /locus_tag="OQQ76_004193"
     CDS             complement(36..1178)
                     /locus_tag="OQQ76_004193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HCS1970433.1"
                     /translation="MSGWFDLTLNQRVYNQDGKTANAVVTYDGNVGEQYNDAWFGDSA
                     NENIMQFSDIYLTTRGFLPFAPEADFWVGKHKLPQYEIQMLDWKTLTTDVAAGVGIEN
                     WALGVGLFDMSLSRDDVDVYSRDFSRTSQMNTNSVDVRYRNIPLWDDATLSLMAKYSA
                     PNKTDQQQDNENDNSYFEMKDSWMLTSVLRQNLQRDTFNEFTLQVDNNSYASSFASFS
                     DASNTMAHGRYYYGDHTNGIAGRLISQGEMYLTDNIIMANALVYSHGEDVYSYESGAH
                     SDFDSIRTVIRPAWIWNTWNQTGLELGWFKQQNKTQQGVTLNESAYKTTLWHALKVGE
                     SILGSRPEIRFYGTYINILDNELSNFKFNENSKDEFMAGIQAEVWW"
BASE COUNT          340 a          292 c          220 g          341 t
ORIGIN      
        1 aatcctgaca tacacaactc cttaactaaa atagattacc accagacttc cgcctggatg
       61 ccggccataa actcgtcttt gctgttctca ttaaacttaa aattcgataa ttcgttatcc
      121 agaatattga tatacgttcc atagaagcga atttctggtc gtgaacctaa aatgctttca
      181 cccactttca atgcatgcca gagtgtcgtt ttataagccg attcatttag tgttacaccc
      241 tgctgagttt tgttctgttg cttaaaccag cctaattcaa gccccgtctg attccatgta
      301 ttccagatcc aggccggtct tattacagtg cgaatactgt caaaatcact atgagcacca
      361 ctttcataac tataaacatc ttcgccgtga gaatagacaa gcgcgttagc cataataata
      421 ttgtcagtaa gatacatctc gccctgagag attaaacgcc cggcgatccc attggtatga
      481 tcaccatagt aatagcgacc atgcgccatc gtattactgg catctgagaa actggcaaaa
      541 ctgctggcat aggaattatt gtcaacctgt aacgtaaatt cattaaacgt atcgcgttgc
      601 aggttttgcc gtaaaacaga agtcagcatc cagctatctt tcatttcaaa ataactgttg
      661 tcattttcgt tatcttgttg ttgatccgtt ttattaggtg cggaatattt agccattaat
      721 gataatgtcg catcatccca taacgggata ttgcgataac gaacatccac agaattggta
      781 ttcatctggc tggtacgcga aaaatcacga gagtaaacat cgacatcatc acggcttaag
      841 gacatatcaa acagccctac accaagtgcc cagttttcaa tccccacacc cgcggcgaca
      901 tccgtggtta aggttttcca gtccagcatc tggatctcat attgcgggag tttatgtttg
      961 ccgacccaga agtctgcctc tggtgcgaag ggtaaaaaac ctcgcgttgt caggtaaata
     1021 tcgctgaact gcatgatatt ttcattggca ctgtcaccaa accaggcatc gttatactgc
     1081 tcacccacgt tgccatcata ggtaacgacc gcatttgccg ttttaccgtc ctgattataa
     1141 acacgctgat ttaaggtcag gtcaaaccaa ccgctcatct cattaccaaa acg
//
LOCUS       DAJVUN010000360         1186 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.366, whole genome shotgun sequence.
ACCESSION   DAJVUN010000360 DAJVUN010000000
VERSION     DAJVUN010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.366"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..1145)
                     /locus_tag="OQQ76_004194"
                     /pseudo
     CDS             complement(1..1145)
                     /locus_tag="OQQ76_004194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234052.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
BASE COUNT          370 a          214 c          180 g          422 t
ORIGIN      
        1 ttttataggg ttctttatcg agattgaaaa ataaggtctc agctatttta attttagatt
       61 gatcgcagct aaaatcttta gattgatcgc ggctaaaatc aatatgattt atcacggagc
      121 atgcatactt tatcttttca gaatcaccaa aatattgcat tcttttatta aaacaccaat
      181 ccagtattct tacatcatta atatatggga attttaaaaa agtctccaga atcgatgacc
      241 ggtgtaaggt taacttttgc atcatctaag gaatcaataa gaatatgaga caggttaact
      301 ttgatgtcat taatttcatt gtcagtagct ttcttattat taagaagata attatttact
      361 gcgttaaggt catctatttc tttcagtatc cctttttcac caagcaagta tgaaatcgat
      421 tcattacata cataaggcat taatagcaga tgttctttcc ttattgctaa taatgcatta
      481 ttcaatggtt tttctaataa atccgtaatc gtagaatcaa ctgaatcttt acaactcacc
      541 tgcgagttat tcaagtcctg agaattatta aactcctgcg aaatatttaa tagacgagct
      601 atttccttgt tagcttcgcg ttggtaacat gccagaatct tgttagtaat caggtgtaat
      661 gaactctcat cttttctttc aaaggacttt ccttcataac gattagtcga accatcaggt
      721 tgttgaaata taatagccgt atgtccttga cgagtcccca tagtagtgaa agtggaaagt
      781 gtgatttcta tttccacctt agataaatcc gctcgttccc cttcaggatt attcataaca
      841 aactttatta tctcactgcc atcattattt ttgatataag atgaggactc aatatgagcc
      901 atcatatttc ttcccgcttc gttggagcgt ttgctaaaat ccacataacc tagagtaaat
      961 atttttacca aaaattccaa aaatgtctta ggatcaagga tatttcttgt gttatcctgc
     1021 ccctcggcat tacgggcaaa attattcatt ccaacacgcc aggtatttaa aacttcactt
     1081 ttttgtttaa aattgtcggc taatgtaatg tgttgagaat aattcaaatc tgatattttg
     1141 ctcatgacga actccttgag ttaataagaa cgtctaagca ttacaa
//
LOCUS       DAJVUN010000361         1179 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.367, whole genome shotgun sequence.
ACCESSION   DAJVUN010000361 DAJVUN010000000
VERSION     DAJVUN010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.367"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            141..941
                     /locus_tag="OQQ76_004195"
     CDS             141..941
                     /locus_tag="OQQ76_004195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HCS1970434.1"
                     /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAG
                     NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATIL
                     ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALFNQAVERVHTAIVVQDPTMQRRTM
                     ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR
                     LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLR"
BASE COUNT          294 a          293 c          271 g          321 t
ORIGIN      
        1 gtttatctac agcatttcct taaaagatat gtcaggcttg cggagtggcg gttaaggaca
       61 tacgacttcc tcctttcaga gtgctcagct tctcactatt atctcacgca gtattcttaa
      121 gggaacgata aggaggaacc atgaacatta ccccgtttcc gacgctttcg ccggcaacta
      181 tagatgccat aaatgttatc ggacagtggc tggcgcagga tgatttctcc ggtgaggtgc
      241 cgtatcaggc cgattgcgtg atccttgcag gcaatgcggt tatgccgact atcgacgcgg
      301 catgtaagat tgctcgcgat cagcaaattc ctttactgat tagtggtggt atcggtcact
      361 cgacaacttt tttgtatagc gccatcgcac agcatccgca ctacaacact atccgcacca
      421 ctggcagagc agaagcgacc atcctggcgg atatcgctca tcagttctgg cacattccgc
      481 atgaaaaaat ctggattgaa gaccagtcaa caaactgcgg tgaaaacgca cgctttagca
      541 tcgcgctatt taatcaggcc gtagaacgag ttcatacggc tatcgttgtt caggacccca
      601 ccatgcagcg gcgcacgatg gcgacgttcc gccgtatgac tggggacaat cccgatgcac
      661 cacgctggtt aagttatccc ggattcgttc ctcagttagg aaataacgca gacagtgtaa
      721 tctttattaa tcagttacaa ggattatggc cggttgagcg ttatctctca ctactcactg
      781 gcgagctgcc gcgtttacgc gatgatagcg atggctacgg tccccgcggg cgagatttta
      841 tcgttcacgt tgattttccg gcagaagtca tccatgcatg gcaaacgctt aaacacgatg
      901 cggtgctcat cgaggcgatg gaaagtcgct cgttacgtta aaaattgccc gtttgtgaac
      961 cacttgtttg caaacgggca tgactcctga cttttatttc tgccttttat tccttttaca
     1021 cttgttttta tgaagccctt cacagaattg tcctttcacg atgccgtctc tatgatgatt
     1081 gatgttaatt aacaatgtat ttaccaagaa caaacatata aatcacagga gtcgcccatg
     1141 tcagtacccg ttcaacatcc tatgtatatc gatggacag
//
LOCUS       DAJVUN010000362         1164 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.368, whole genome shotgun sequence.
ACCESSION   DAJVUN010000362 DAJVUN010000000
VERSION     DAJVUN010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.368"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(80..289)
                     /locus_tag="OQQ76_004196"
     CDS             complement(80..289)
                     /locus_tag="OQQ76_004196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HCS1970435.1"
                     /translation="MWMEFDRISPLGDERGDIRNAQIVKAVFGAQGMNVALKDVMLCW
                     GEDEDKPEVDPFAALEDALSFAAQS"
     gene            complement(385..765)
                     /locus_tag="OQQ76_004197"
     CDS             complement(385..765)
                     /locus_tag="OQQ76_004197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly chaperone"
                     /protein_id="HCS1970436.1"
                     /translation="MKKDLKTLALALARLSGFRHKTVKVPEWGNVSVVLREPSAEAWY
                     LWQEVLNGDGEDDDTLSVVAKTRRNLEADVTLFCDVLCDTDLQRVFTPDDREQVLAVY
                     GPVHARLLRQALELIADAESARKK"
     gene            complement(780..>1164)
                     /locus_tag="OQQ76_004198"
     CDS             complement(780..>1164)
                     /locus_tag="OQQ76_004198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="immunoglobulin domain-containing protein"
                     /protein_id="HCS1970437.1"
                     /translation="LAEVRQHTWSSGTNGVVAATFSLRLKGKPVSFVVPLAFVKNLDK
                     TLTVNTGALLTMSVSANGGMPPYKYAWKKDGQPVDGQTTDTSSKPGAQSADAGKYTCV
                     VTDSAEKAQSVTSVECTVTVSAAAG"
BASE COUNT          241 a          396 c          268 g          259 t
ORIGIN      
        1 attttgataa tcagttcacg taacgtcgcc attcaccttt ctccgggcgt aaaaaaaccg
       61 cctcagcggt tctcatcatt catgactgtg ctgcaaagct cagcgcgtct tccagcgccg
      121 caaacggatc cacctccggc ttatcctcat cctcgcccca gcagagcatg acgtccttca
      181 gtgcaacatt catcccctgt gccccgaaaa ccgctttcac gatctgtgca ttacggatat
      241 ccccgcgctc atcacccagc ggggatatcc tgtcgaactc catccacatc atcgcctcgc
      301 tcgcactcag gctgtggcgc agttcggata aggtgcgccc cagacggagc gcaagtcgca
      361 tcagaaagcg aatttccggg cgggctactt ttttctggcc gactctgcat cagcgatcag
      421 ttccagtgcc tgacgcagca accgggcatg taccggacca tagacggcca gcacctgctc
      481 acggtcgtcc ggagtgaaca cccgctgcag gtccgtatca cacaggacat cgcagaacag
      541 cgtcacatcc gcttccaggt tacggcgggt tttcgccacc accgacaggg tatcgtcatc
      601 ctctccatca ccattgagca cttcctgcca cagataccag gcctctgccg aaggctcccg
      661 cagcaccacg ctgacattcc cccattccgg caccttcacc gttttatgac gaaaccctga
      721 cagtctggcc agcgccagcg ccagcgtttt cagatccttt ttcatgatga cccatcccct
      781 tatccggcag ctgcgctcac tgtaacggtg cattcaacag acgtcacact ctgtgctttc
      841 tctgccgaat cggtcaccac gcaggtatat ttccccgcat cagcggactg cgcacctggc
      901 ttactggagg tgtctgtcgt ctgcccgtca accggctgac catccttctt ccaggcgtat
      961 ttatacggcg gcattccccc gttggcactg actgacattg tcagcagcgc accggtattc
     1021 acggtaagtg tcttatccag atttttcaca aacgccagcg gtaccacaaa ggacaccggt
     1081 ttgcctttca gacgcagtga gaacgttgca gccaccacac cgttggtacc ggatgaccag
     1141 gtgtgctgac gcacttccgc cagg
//
LOCUS       DAJVUN010000363         1135 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.369, whole genome shotgun sequence.
ACCESSION   DAJVUN010000363 DAJVUN010000000
VERSION     DAJVUN010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.369"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(35..610)
                     /locus_tag="OQQ76_004199"
     CDS             complement(35..610)
                     /locus_tag="OQQ76_004199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970438.1"
                     /translation="MAIKGLDQAIDNLSRVRKNAIPAASAMTINRVATTAINQSSSQV
                     ARETRVRRKLVKERSRLKRATVRNPNARIIVNRGDLPVIKLGIRMLGRRPNSILKAGQ
                     HRYQRAFIQRLNNGRWHVMQRLPQARYEEGNDDKGRKKRNRLPIQVVKIPMAAPLKQA
                     FDENVDRIRRERLPKELAYALKQQLRIAIKR"
     gene            complement(626..979)
                     /locus_tag="OQQ76_004200"
     CDS             complement(626..979)
                     /locus_tag="OQQ76_004200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970439.1"
                     /translation="MRDFQNAFDAALAGVDSTIVEVMGLCAQFTSGAQRGSEVQGVFD
                     DPESLGFAGGGVRIEGSSPSLFVRTDTVRAVRRGDTLTINGEMFWVDRISPDDGGSCY
                     LWLNRGQPPAVNRRR"
     gene            complement(972..>1135)
                     /locus_tag="OQQ76_004201"
     CDS             complement(972..>1135)
                     /locus_tag="OQQ76_004201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-packaging protein FI"
                     /protein_id="HCS1970440.1"
                     /translation="DDVKAVRVRKCLHVMGYCPETGRPVELTYRGMRVMVPSPLATAM
                     IQHGTAEHA"
BASE COUNT          242 a          354 c          264 g          275 t
ORIGIN      
        1 gcatccagca ctgcggcacg aatgtcagtg tgtttcatcg ttttatcgca atcctcagtt
       61 gttgtttcag cgcgtatgcc agttctttag gcaggcgttc acgccggata cggtcaacat
      121 tctcatcaaa tgcctgtttc agtggggccg ccatcgggat tttcaccacc tgaatgggaa
      181 ggcgattacg ctttttcctt cccttgtcgt cattgccctc ctcatatctg gcctggggaa
      241 gacgttgcat aacatgccag cgcccattat ttaatcgctg gataaatgcc cgctgataac
      301 gatgctgacc ggctttgagt atgctgttcg gacgacgtcc cagcattctg atccccaact
      361 taatcacagg gagatcaccg cggttaacga taattctggc attcggattt ctgaccgtcg
      421 cccgtttcag tctggaccgt tcctttacca gtttccgtct caccctggtt tcccgggcaa
      481 cctgtgacga agactgatta atcgccgttg tggccacgcg gttaatcgtc attgctgaag
      541 ccgccggaat ggcgttttta cgaacccggc tcagattatc aatcgcctga tcaagccctt
      601 ttatcgccat aatttcaccc tgcgtttatc gtcgccggtt aacagcgggt ggttgcccac
      661 ggttgagcca gagataacag cttcccccgt catccggaga aatacgatcc acccagaaca
      721 tctcgccgtt aatggtcagc gtgtcaccac gccgcacggc acgcaccgta tccgtccgca
      781 caaataatga cgggctgctt ccttcaatac ggaccccgcc accggcaaaa cccagcgact
      841 ccggatcgtc aaaaaccccc tgaacttcgc ttccacgctg tgctcccgag gtgaactgcg
      901 cacagagccc catcacttca acaatcgtgc tgtccacccc ggcaagggca gcatcaaagg
      961 cattctgaaa atcacgcatg ctcagccgtt ccgtgctgta tcatggctgt cgccagtggt
     1021 gatggcacca taacacgcat gccccggtac gtcagttcaa cgggacggcc tgtctccggg
     1081 caatacccca tcacatgcag gcatttccgc acacggaccg ctttaacatc atccg
//
LOCUS       DAJVUN010000364         1132 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.370, whole genome shotgun sequence.
ACCESSION   DAJVUN010000364 DAJVUN010000000
VERSION     DAJVUN010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.370"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..850
                     /locus_tag="OQQ76_004202"
                     /pseudo
     CDS             1..850
                     /locus_tag="OQQ76_004202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416251.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            901..>1132
                     /gene="chbA"
                     /locus_tag="OQQ76_004203"
     CDS             901..>1132
                     /gene="chbA"
                     /locus_tag="OQQ76_004203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIA"
                     /protein_id="HCS1970441.1"
                     /translation="MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQ
                     GDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAG"
BASE COUNT          257 a          284 c          302 g          289 t
ORIGIN      
        1 ttgggtcatt aaactgcccg acagcgtacc tgcttcagta tcgcgttcct tctcggcatt
       61 aattcccggc tttattattc tttccgttat ggggattatt gcctgggcgt tgaataccta
      121 gggcaccaac ttccatcaga tcattatgga taccatctca accccactgg catcgttggg
      181 tagcgtggtg ggctgggcct atgtgatctt tgttccactg ctctggttct tcggtattca
      241 tggcgcgctg gcgctgaccg cactggacaa cggcattatg acgccgtggg cgctggaaaa
      301 tatcgcgacc tatcagcaat atggttccgt cgaagcggcg ctggcagccg gtaagacctt
      361 ccatatctgg gccaagccga tgctggactc ctttattttc cttgggggca gtggtgcgac
      421 tttaggcctg atcctggcta tctttatcgc ctctcgccgt gctgattatc gtcaggtggc
      481 aaaactggcg ctgccgtccg gcatcttcca gattaacgaa ccgattctgt ttggtctgcc
      541 aattatcatg aacccggtga tgtttatccc gtttgtactg gtacaaccga ttctggcggc
      601 aatcaccctc gcagcgtact acatgggcat tattcctccg gtgaccaata ttgcaccgtg
      661 gaccatgcca accggtctgg gagccttctt taacaccaac ggtagcgtcg ctgcattgct
      721 ggtcgcactc ttcaaccttg atatcgcaac gttaatttat ctgccctttg ttgtggtggc
      781 taacaaagcg caaaacgcga ttgataaaga agagagcgaa gaagatatcg ctaacgccct
      841 gaaattttaa tcgatgccgg tacggttaat cgtgccggta agaagagaga ggaacgatgt
      901 atgatggatc tcgataacat tcccgatacg caaacagaag ctgaagagct ggaagaagtg
      961 gtgatggggc ttatcatcaa ctccggacaa gcgcgcagcc tggcgtatgc ggcactgaaa
     1021 caggcgaagc agggcgattt tgccgcagca aaagccatga tggatcagtc acggatggca
     1081 ttgaatgaag cgcatctggt acagacgaaa ctgattgaag gcgatgcggg cg
//
LOCUS       DAJVUN010000365         1127 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.371, whole genome shotgun sequence.
ACCESSION   DAJVUN010000365 DAJVUN010000000
VERSION     DAJVUN010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.371"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            316..>1127
                     /gene="kgtP"
                     /locus_tag="OQQ76_004204"
     CDS             316..>1127
                     /gene="kgtP"
                     /locus_tag="OQQ76_004204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HCS1970442.1"
                     /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC
                     SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM
                     MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF
                     YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL
                     DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLV"
BASE COUNT          274 a          264 c          270 g          319 t
ORIGIN      
        1 agcgaaaggc catccgtcag gatggccttt ttgcattggc gcagaaaaaa tgcctgatgc
       61 gacgctgcgc gtcttatact cccacatatg ccagattcag caacggatgc ggtttcccca
      121 acttgcctac ttccatacgt gtcctcctta ccagaaattt atccttaagc tcctcaataa
      181 ccattttcct gctaactaaa ttcatggtta atgttgcata ataatacgca acaaatgtat
      241 agcattttct ttaccaaaag aaataaacaa aagcgaccaa caaaagcatc ggattacggc
      301 aggagacata atggcatggc tgaaagtact gtaacggcag acagcaaact gacaagtagt
      361 gatactcgtc gccgcatttg ggcgattgtg ggggcctctt caggtaatct ggtcgagtgg
      421 ttcgatttct atgtctactc gttctgttca ctctacttcg cccacatttt cttcccttcc
      481 gggaacacga cgactcaact actacaaaca gcaggtgttt ttgctgcggg attcctgatg
      541 cgcccaatag gcggttggct atttggccgc atagccgata aacatggtcg caaaaaatcg
      601 atgctgttat cggtgtgtat gatgtgtttc ggatcgctgg ttatcgcctg cctcccaggt
      661 tatgaaacta taggtacgtg ggctccggca ttattgcttc tcgcgcgttt atttcaggga
      721 ttatccgttg gcggagaata tggcaccagc gccacctata tgagtgaagt tgccgttgaa
      781 gggcgcaaag gtttttacgc atcatttcag tatgtgacgt tgatcggcgg acaactgcta
      841 gccctactgg ttgtcgtggt tttacaacac accatggaag acgctgcact cagagagtgg
      901 ggatggcgta ttcctttcgc gttaggagct gtgttagctg ttgtggcgtt gtggttacgt
      961 cgtcaattag atgaaacttc gcaacaagaa acgcgcgctt taaaagaagc tggatctctg
     1021 aaaggattat ggcgcaatcg ccgtgcattc atcatggttc tcggttttac cgctgcgggc
     1081 tccctttgtt tctatacctt caccacttat atgcagaagt atctggt
//
LOCUS       DAJVUN010000366         1103 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.373, whole genome shotgun sequence.
ACCESSION   DAJVUN010000366 DAJVUN010000000
VERSION     DAJVUN010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.373"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..1077)
                     /gene="garP"
                     /locus_tag="OQQ76_004205"
     CDS             complement(<1..1077)
                     /gene="garP"
                     /locus_tag="OQQ76_004205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001347768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactarate/glucarate/glycerate transporter
                     GarP"
                     /protein_id="HCS1970443.1"
                     /translation="MHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMG
                     YIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGIS
                     MFFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAW
                     GWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSA
                     AASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLV
                     ASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTL
                     VVMLMALAFFGKGFGALGWPVISDT"
BASE COUNT          320 a          288 c          280 g          215 t
ORIGIN      
        1 ggtgtcagaa atcaccggcc agcccagagc accaaatcct ttgccaaaaa aagccagcgc
       61 catcagcatg accaccagcg tggtgttgtt ggtgtagtta cataagatga tggtggaagc
      121 cagcaacatt cccagcacaa tcggtagctt acgtgccagg gtcagggata aaccgcgttt
      181 gatcagataa tccgagaaga cacctcccag cacgccgccc gcaaaaccac acagtgccgg
      241 aatcgaggcg accagaccca ctttcagaat cgacatgcct ttttcctgca ccagataaat
      301 cgggaaccag gtgaggaaga accaggtgat ggtgttgata aaatattgtc cgaaaaatac
      361 gcccaacatc atgcggttag agagcaattg cttgatgtaa tgcagtttgg gaccgcttgc
      421 tgccgcgctg cccggctttt tgtggtccat atcgaccacc gcgccatttt cagagataaa
      481 cttcagctct tccgcagaca tacgtgggtg atctgtcggg ttatgaatca acttgatcca
      541 cagcgccgtc agcacaaaac caatcacccc cataacggtg aagacgtgct cccagcccca
      601 ggcgaaagtc agccagccaa gcagaggcga aaagagcgcc agcgagaaat attgcgccga
      661 gttaaagatg gcggaggcag taccacgttc tttcgtcggg aaccaggcgg cgacaatacg
      721 ggcgttcgcc gggaatgatg gcgcttccga gaagccgagc ataaagaaca tagagatccc
      781 tgcccaggcc agcgggaaca tatcaacaaa gccttgcagg aaggtgaata gcgaccagaa
      841 aaagaggctg taggtgtaaa cttttttcga gccaaactta tcaagcagcc agccgccggg
      901 aatttgcatc agcaggtagg cccagccaaa agcggagaag atgtaaccca tcgaaaccgc
      961 acttaactgc aactcttttg ccacttcggt accagcaata gacagcgttg cacgatcggc
     1021 gtagttaacg gcggtaacaa taaaaataat cagtaatatt aaatagcggg tatgcacgcc
     1081 tttctttttt acgtcaacgg tgt
//
LOCUS       DAJVUN010000367         1097 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.374, whole genome shotgun sequence.
ACCESSION   DAJVUN010000367 DAJVUN010000000
VERSION     DAJVUN010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.374"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            57..1070
                     /locus_tag="OQQ76_004206"
                     /pseudo
     CDS             57..1070
                     /locus_tag="OQQ76_004206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005108248.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
BASE COUNT          276 a          244 c          305 g          272 t
ORIGIN      
        1 actgtatccg ctcaatttgc cgtacgctgc tgccgttgat gcaggaaaac gaaaagttgt
       61 atcaattgcc gggtagtgaa ctgctgttag tgctgagcgg gccggaaacg gaagggcgac
      121 tccagcatat ggttaacatc ctgaatagtc ggcaaattca ctggaacaat accgggctgg
      181 atatgggcta tggtgctgcc taggggcgtt ttgatggaaa tcaggaaacc ctgcaaccct
      241 tgttggggca gttaagctgg ctggcggagc aatcctgcgc acatcatcat gtgctggcgc
      301 tggatagcag agaggagatg gtttccgggc agaccactaa acaggtgcta ttgctgaata
      361 ccattcgcac ggcgttagat cagggtgatt tgctgctcta cgcccagcca attcgcaaca
      421 aagagggtga aggttatgat gagatcctcg cgcgactgaa atatgacggc ggcattatga
      481 ccccggataa gtttctgccc cttattgctc agtttaacct tagcgcgcgt tttgatttgc
      541 aagtgctgga atccttgttg aagtggctgg caacacaccc ttgcgacaaa aaaggaccgc
      601 gcttttcagt caatttaatg ccgctcacgc tgctgcaaaa gaatattgcc gggcggatta
      661 ttcgtctgtt taagcgttat cacatctccc cgcaggcggt cattcttgag atcaccgagg
      721 agcaggcgtt ttctaacgca gaaagcagca tgtacaacat cgagcagctg cataagtttg
      781 gtttccggat tgcgattgat gactttggca ccggctatgc caactacgaa cggttaaagc
      841 gtttgcaggc tgatatcatc aaaattgatg gcgtctttgt gaaagatatt gtcacgaaca
      901 cgctggatgc gatgattgtg agatcaatta ccgatctggc gaaagcgaag tcattgagtg
      961 tggtcgcgga gtttgtcgag acgcaacagc agcaggcgct attgcataag ctcggggtgc
     1021 aatatctgca agggtatttg attggtcgcc cgcagccatt agctgattaa caggcgtaaa
     1081 aaaaccgggg aattatc
//
LOCUS       DAJVUN010000368         1086 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.375, whole genome shotgun sequence.
ACCESSION   DAJVUN010000368 DAJVUN010000000
VERSION     DAJVUN010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.375"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            53..802
                     /locus_tag="OQQ76_004207"
     CDS             53..802
                     /locus_tag="OQQ76_004207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000093946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HCS1970444.1"
                     /translation="MSSFLLGRFLHPGVFSLCVLLPLLASATTSHISFSYAARQRMQN
                     RARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQA
                     LVENNHFLSSNHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILE
                     AKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRM
                     GETIRVSRLAEPFWQDHFLGARWILTEETIL"
     gene            978..>1086
                     /locus_tag="OQQ76_004208"
     CDS             978..>1086
                     /locus_tag="OQQ76_004208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970445.1"
                     /translation="MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLR"
BASE COUNT          248 a          290 c          271 g          277 t
ORIGIN      
        1 ctcctccggt cttttaaaat tctcaccttc attcagccgg tttatgtcct tcatgtcttc
       61 gttcttgctc ggcagatttc tgcatccagg cgtgttttcg ttatgcgttt tgctcccttt
      121 actcgccagc gccaccacat cacatatctc tttcagctac gccgcccgcc agcggatgca
      181 aaaccgtgcg cgtttattaa aacagtacca aacccatctg aaaaaacagg ccagctacat
      241 tgtggaaggc aatgccgaaa gcagaagggc gctacgccag cacaaccggg agcagataaa
      301 acagcatcca gaatggtttc ctgcgccgct caaggcaagt gacagacgct ggcaggcgtt
      361 ggtagaaaac aatcatttcc tcagcagcaa ccacctgcat aatatcaccg aagtggcgat
      421 tcaccgtctg gagcaacagc ttggcaagcc ttacgtctgg ggcggcacgc ggcccgatca
      481 aggcttcgac tgtagcgggt tggtttttta tgcctacaac aagatccttg aggctaagct
      541 cccgcgcacg gctaatgaga tgtatcacta ccatcgggca accattgtgg caaataacga
      601 cctgcgccgg ggagatttgc tgtttttcca tatccacagc cgtgaaattg ccgaccatat
      661 gggcgtgtat ctgggagacg gtcagtttat tgagtcgccg cgcatggggg aaaccattcg
      721 ggtaagtcgg ttagctgaac ctttctggca ggatcatttt ttgggcgcgc ggtggatatt
      781 gacggaagag acgattttgt aggacggata aggcgtttac gccgcatccg gcggtggtgc
      841 gcagatgcct gatgcgacgc tgacgcgtct tatcatgcct acaaatctgt gcgtttttgc
      901 gagccgcttt cctgttattc catcacctca ttgccgacct ttccttttct tcttaccgtt
      961 gagaaaaagg agtcgccatg tctgaatatc gtcgttatta catcaagggg ggaacctggt
     1021 ttttcacggt gaatttacgc aatcgtcgaa gccaactctt gaccacccag taccagatgc
     1081 tccgta
//
LOCUS       DAJVUN010000369         1078 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.376, whole genome shotgun sequence.
ACCESSION   DAJVUN010000369 DAJVUN010000000
VERSION     DAJVUN010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.376"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..967)
                     /gene="ccp"
                     /locus_tag="OQQ76_004209"
     CDS             complement(<1..967)
                     /gene="ccp"
                     /locus_tag="OQQ76_004209"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HCS1970446.1"
                     /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV
                     SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL
                     LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA
                     SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGV
                     DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW
                     DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDS"
BASE COUNT          272 a          286 c          239 g          281 t
ORIGIN      
        1 gggaatccgg cgtaattaat gttttctcaa attcagcaat ggcatcagta atattttcgc
       61 cactgaaacc ttgcggataa acttcgagga actgcgcttt aagctgcgga tctttttcca
      121 gcttagcaat aatttcgtcc caggatttcg acgccatttc aatcgggttc aacggcggtc
      181 cacctgcctg atcctgcaat gttgccgcac gaccatccca gaactgctca acgttaaata
      241 ctgagttaaa taccgtcggc gcgttaatcg gcccaactgc gccaccaaca ccaatcgatg
      301 tttttctgcc atcgacgccc cccgcattca acgcatggca atgagcgcat gaaatggtgc
      361 tatcagccga taaacgggga tcgtgataca gcgcaaagcc caacgccact ttttgcgcat
      421 cggtaggcag tttttgcggg atgggctgca ccggttcatt gcgatgctcc ggagcagtat
      481 cattgctggc gtaatattcc gcgcgctgtt ttgcaatcca ggccagtatt tccgcccgct
      541 cttcatcact caccttaccc gcccagtgta gcgcggtata acgcgttggt ggcatagttt
      601 catactgcat cacccattca atcttattca gatcgctttg cgaaacgggt ttatcagcca
      661 gcagtgccgc acgcacggcc tcgaggttaa aagatttata tccaagctta atgtcgtaat
      721 ccatcaactg tttcgcgcca ggaatataat aataggcggg taattctgcc gaaggcgtgt
      781 ggcaatagtc gcatcctttt tcgcggagaa agcctaaaac cttattattt tcactgacag
      841 cagatgcctg aacatcggcc tgtttactgc gtttattatc gtggtaccac acataaccag
      901 ataaccctaa atagcaaatc gcgacgccag ccaggccgat cgcggtaata cgtgagacca
      961 ttttcattat tcttccctca cggtggtgag ttattgtgac ccagaaaatt ttccagaatg
     1021 ctgcaaacgt ctctgcgaga caaagccatc ataaaaaaca gggagatacg ctttttga
//
LOCUS       DAJVUN010000370         1043 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.377, whole genome shotgun sequence.
ACCESSION   DAJVUN010000370 DAJVUN010000000
VERSION     DAJVUN010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.377"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(182..655)
                     /locus_tag="OQQ76_004210"
     CDS             complement(182..655)
                     /locus_tag="OQQ76_004210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA14"
                     /protein_id="HCS1970447.1"
                     /translation="MKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEI
                     YRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG"
     gene            811..>1043
                     /locus_tag="OQQ76_004211"
     CDS             811..>1043
                     /locus_tag="OQQ76_004211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase N-terminal SAM-like
                     domain-containing protein"
                     /protein_id="HCS1970448.1"
                     /translation="MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAF
                     IRFHGVRHPATLGSSEVEAFLSWLANERKVSVST"
BASE COUNT          255 a          271 c          236 g          281 t
ORIGIN      
        1 cctgcgaata tgtgagtttt gacctaatga gccacaaaaa ctcattttcg cccacgataa
       61 tttttctact tcctttcttt ggaatgctca tttcaatatt cacataacgt cgctatcaat
      121 cgcggaaaag gcgtagtgcg cgaagcgaac gaagcttttt gccgtcgatt gcatagcttt
      181 gttaaccctt tttccaaatt tgatagcaat agttaatgtt tgaagtaaag tgttgctcaa
      241 aaacaacttc gaaggtattt ggaatactcg ggaagaaaac atccccctct ggctcgatgt
      301 cgatcgtcga taagtggagc gtagaggcca tgggtaatgt ttctcggtaa atttctccgc
      361 caccagacac tataacgtga ccggtgaatt cagctagcct gtccatggcc tcttcgattg
      421 actgaaatac aactacattg tcatcatttg atgtccaacc tgagcgggta acgaccgcgt
      481 atttcctatt ggggagtgcg cccatagatt caaacgtctt gcgacccacc agaagccact
      541 gattgtaggt caatgcttta aaaagtagct gctccccttt cgcggaccag ggtatgtctg
      601 gaccgcaacc aatcacgccg tttttcgctt tcgcagccat caatgatact ttcaaggttc
      661 tcatcctggg ttaactttgt tttagggcga ctgccctgct gcgtaacatc gttgctgctc
      721 cataacatca aacatcgacc cacggcgtaa cgcgcttgct gcttggatgc ccgaggcata
      781 gactgtacaa aaaaacagtc ataacaagcc atgaaaaccg ccactgcgcc gttaccaccg
      841 ctgcgttcgg tcaaggttct ggaccagttg cgtgagcgca tacgctactt gcattacagt
      901 ttacgaaccg aacaggctta tgtccactgg gttcgtgcct tcatccgttt ccacggtgtg
      961 cgtcacccgg caaccttggg cagcagcgaa gtcgaggcat ttctgtcctg gctggcgaac
     1021 gagcgcaagg tttcggtctc cac
//
LOCUS       DAJVUN010000371         1014 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.378, whole genome shotgun sequence.
ACCESSION   DAJVUN010000371 DAJVUN010000000
VERSION     DAJVUN010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.378"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..648
                     /gene="ospC4"
                     /locus_tag="OQQ76_004212"
     CDS             <1..648
                     /gene="ospC4"
                     /locus_tag="OQQ76_004212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC4"
                     /protein_id="HCS1970449.1"
                     /translation="KTDVPIFNTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPV
                     SLDRIINFVFQLEYHIPRMLSTDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAH
                     QALAYSLGNKKADIALYLLSKFNFTKQDVAEMEKMNNNRYCNLYDVEYLLSKDGANYK
                     VLEYFINNGLVDVNKKFQKANSGDTMLDNAMKSKNPKMIDFLLKNGAILGKRFEI"
BASE COUNT          359 a          163 c          200 g          292 t
ORIGIN      
        1 aaaactgatg ttccaatatt taacactaaa gatatgaggc ttggaattgg gttgcatctt
       61 attgatttta taagaaagag taaagatcaa ggattcagag agttttgtta taacaaaaat
      121 attgatcctg ttagtctgga tagaattata aactttgtgt ttcagcttga gtatcatata
      181 ccaagaatgc taagtacaga taacttcaaa aaaataaaac tcagagacat atctttggag
      241 gatgcgatta aagcatctaa ttatgaagag attaacaata aagtgactga taaaaaaatg
      301 gctcatcagg cccttgctta ttctttaggc aataaaaaag ctgatatagc actttattta
      361 ctatctaaat ttaattttac aaaacaagat gtcgcagaga tggagaaaat gaacaacaat
      421 agatattgta atctgtatga tgttgaatac ttacttagta aagatggtgc caactataaa
      481 gtgctagaat attttatcaa taatggattg gttgatgtaa acaaaaaatt tcaaaaagca
      541 aatagtgggg acactatgct tgacaatgca atgaaaagca aaaatccaaa aatgattgat
      601 tttttattaa aaaatggagc aatattaggc aaacgatttg agatatgacc taaaagctcg
      661 gccaaataat aatgtcgtcg attatcgaag tcatcatgag tgattctgtc cccacagtgc
      721 agcatcagca tgacagtgaa ttgtctggcg tggtccattt aatgagatgg agatggtccc
      781 tctttcctaa atagctgtgc ctaataccgc tacacttttg ccagcccatg tttgcctccg
      841 gggaatgggc tgacggttcc ttcaaaatcc attgcacgca gttatgtcgg agcgggaact
      901 tgactcctgt ctttacggga gtgaggtagc ctgagtttaa cggacactcc ttcctgaaat
      961 agaatggcat cagaaggagc caataatgag cagaaaaacc caacgttact ctac
//
LOCUS       DAJVUN010000372         1009 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.379, whole genome shotgun sequence.
ACCESSION   DAJVUN010000372 DAJVUN010000000
VERSION     DAJVUN010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.379"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            201..395
                     /gene="bfd"
                     /locus_tag="OQQ76_004213"
     CDS             201..395
                     /gene="bfd"
                     /locus_tag="OQQ76_004213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HCS1970450.1"
                     /translation="MYVCLCNGVSDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR
                     AAREVMQDELMQMPEFKEIA"
     gene            468..944
                     /gene="bfr"
                     /locus_tag="OQQ76_004214"
     CDS             468..944
                     /gene="bfr"
                     /locus_tag="OQQ76_004214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HCS1970451.1"
                     /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVE
                     YHESIDEMKHADKYIERILFLEGIPNLQDLGKLGIGEDVEEMLQSDLRLELEGAKDLR
                     EAIAYADSVHDYVSRDMMIELLADEEGHIDWLETELDLIGKIGLQNYLQSQIKVKD"
     gene            complement(941..>1009)
                     /locus_tag="OQQ76_004215"
     CDS             complement(941..>1009)
                     /locus_tag="OQQ76_004215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HCS1970452.1"
                     /translation="PFRPFLAAAGFVIGWDSLLIGR"
BASE COUNT          300 a          206 c          231 g          272 t
ORIGIN      
        1 gctaaagttc tgggctaatt acacgttaat tagttttgaa ttgaaaaggg cgcttcggcg
       61 ccctttttgc tgcccgtaat ttgagctcga aatatttagt cgtaattttg ctcgctgaac
      121 tatggcgcaa ataaaactgt gctattgtaa tcataaccat tctcatttac actttgcgca
      181 gaatttgaac gggagcaatc atgtacgttt gtttgtgtaa tggtgtaagt gacaaaaaaa
      241 ttcgccaggc agtccgtcag tttcatccgc aatctttcca acaattgcgt aagtttattc
      301 ctgtgggaaa tcaatgcggt aagtgcattc gcgccgcgcg cgaagtgatg caggacgagt
      361 tgatgcagat gccagaattt aaagagattg cctgaagacc acgcttattt tttgacatcc
      421 cgctagcccc atctacgctc taatagtgga agcggaggga ctataaaatg aaaggtgatg
      481 ttaaaatcat aaattatctc aataaactat tgggaaatga gcttgtcgca atcaatcagt
      541 attttctcca tgcccggatg tttaaaaact ggggcctgat gcgtctcaat gacgtcgaat
      601 accatgaatc catcgatgag atgaaacacg ctgataaata tatcgagcgt attttgtttt
      661 tagaaggaat ccccaactta caggatttag gcaaactggg gattggtgaa gatgtcgagg
      721 agatgctgca atccgacctg cgattagaac tggaaggcgc gaaggatctg cgtgaggcta
      781 tcgcatatgc cgacagcgtt catgactatg ttagccgcga tatgatgatc gagctccttg
      841 ctgatgaaga aggtcatatc gactggctcg aaactgaact ggatctcatc ggtaaaattg
      901 gcctacaaaa ttacctgcaa tcacaaatta aagttaaaga ttaacggcct atcagcaaac
      961 tatcccagcc tataacgaaa cccgcagccg ccagaaatgg cctaaaagg
//
LOCUS       DAJVUN010000373         1006 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.380, whole genome shotgun sequence.
ACCESSION   DAJVUN010000373 DAJVUN010000000
VERSION     DAJVUN010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.380"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            191..1006
                     /locus_tag="OQQ76_004216"
                     /pseudo
     CDS             191..1006
                     /locus_tag="OQQ76_004216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416847.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          370 a          184 c          182 g          270 t
ORIGIN      
        1 gcgcgacggg actttttata ccccgcaggg gtcataacat gcttgacaac ttaatagggg
       61 cacccccctg gctattgtgc gctcatacac tcaaattaaa gataggttct aaataaatga
      121 gcgttttttg atagtctatt tcattaggta atatatattt gtaacaaatc aatcaaaatg
      181 gaataaaatc atgctaccat ctatttcaat caacaatacc agcgcaactt acccagaatc
      241 cattaatgaa aataacaatg atgaagttaa tggattagta caagagctca aaaacctttt
      301 taatggtaag gaaggaataa gcacctgtat taaacatcta cttgagctta taaaaaacgc
      361 catatgagta aacgacgatc cttatagatt taatattaat aattcctcag ttacttatat
      421 tgatattggc tccaatgata cagaccatat tactattggt atcgacaacc aagaaccaat
      481 agaattacct gcgaactata aagacaaaga actcgtccgt actatcatta atgacaacat
      541 agttgagaag actcatgata tcaataacaa ggaaatgatc ttcagcgcat taaaagaaat
      601 atatgatgga gatcctagtt ttatcttcga taagatatca cacaaactca gacatacggt
      661 aacggaattt gatgagagcg ggaaaagcga accaacggac ttatttacct ggtacggtaa
      721 agataaaaaa ggcgactctc tcgctattgt aattaaaaat aaaaacggaa atgattactt
      781 atctctcggt tactacgatc aggacgacta ccacattcaa agaggaattc gtattaatgg
      841 tgatagtctc acccaatatt gtagtgaaaa cgccaggagt gcttcagcgt ggtttgaaag
      901 cagtaaagct atcatggcag aatcatttgc aacaggttcc gatcatcagg ttgtaaacga
      961 gctcaacggg gaaagactga gagaacctaa cgaagttttt aaacgt
//
LOCUS       DAJVUN010000374          996 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.381, whole genome shotgun sequence.
ACCESSION   DAJVUN010000374 DAJVUN010000000
VERSION     DAJVUN010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.381"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..>996)
                     /locus_tag="OQQ76_004217"
     CDS             complement(<1..>996)
                     /locus_tag="OQQ76_004217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HCS1970453.1"
                     /translation="LLSIANTVPYFQLSVRDTGIDTYVLIVGESVRVDNMSLYGYTRS
                     TTPQVEAQRKQIKLFNQAISGAPYTALSVPLSLTADSVLSHDIHNYPDNIINMANQAG
                     FQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQQNTQQKKLIV
                     LHLNGSHEPACSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDRRASVMY
                     FADHGLERDPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYN
                     NYLINAWMGVTKPEQPQTLEEVIAHYKGDSRVVDANHDVFDYVMFRKEFTEDKQG"
BASE COUNT          269 a          232 c          215 g          280 t
ORIGIN      
        1 taccttgctt atcctctgta aactcctttc tgaacatcac ataatcgaaa acatcatggt
       61 ttgcatccac aacccgtgag tctcctttat agtgtgcaat cacttcctca agcgtttgcg
      121 gctgttccgg ctttgttacc cccatccacg cattaataag gtaattattg taagctgtcg
      181 aaaagatgtt gttttccgtt gtgcgatcca cgccatcccc aagaacgggg ctataccaga
      241 taaacatcgg gacatgatat gcctgctggc tagcctccct gcctccatga aaatagacgt
      301 tcttcttcgt agggtcacgt tccaggccgt ggtcggcaaa atacatgacc gaggcgcggc
      361 gatcttttaa taattcaaaa acctgaccta gcaaactatc tgtgtaatga atggagttgt
      421 catagcaggc atcctgatcg tcctgcggtt gaaacacggc gctggattgc ggataggcgc
      481 tacaagccgg ttcatggctt ccatttaaat gaagaacaat cagtttcttt tgctgcgtat
      541 tttgctgtaa tgcttgcgat aaatgcggca acaacaattc atcaaatcct ctgacataaa
      601 ctgtttccat ggcgcgcatg gcgatactgg taactgctgt accattctgc cgaaaagcgg
      661 attgcgagct tagccagaaa gtctgaaatc ctgcttgatt agccatatta ataatgttgt
      721 cggggtaatt atgaatgtca tgactcaaaa cagaatcagc agttaaagaa aggggaaccg
      781 acagcgcagt gtaaggtgcg ccgcttattg cttgattaaa cagtttgatc tgttttcttt
      841 gtgcttcaac ttgcggtgtc gtagagcgtg tatatccata caaagacata ttgtcgacac
      901 gtacagactc ccccacaatc aacacgtagg tatcaatacc tgtatccctg actgataatt
      961 gaaaatacgg caccgtgttt gcaattgaga gtaatc
//
LOCUS       DAJVUN010000375          994 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.382, whole genome shotgun sequence.
ACCESSION   DAJVUN010000375 DAJVUN010000000
VERSION     DAJVUN010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.382"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..257
                     /locus_tag="OQQ76_004218"
     CDS             <1..257
                     /locus_tag="OQQ76_004218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970454.1"
                     /translation="PGGNCSPQNLSDLQNEKNRLCNQSRACAPQMLRKEILRRYEINL
                     ACASVRKQINNQCFGGGDKAHMEEENKAYKTAADCSGLIK"
     gene            254..757
                     /locus_tag="OQQ76_004219"
     CDS             254..757
                     /locus_tag="OQQ76_004219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000720080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970455.1"
                     /translation="MKKIIFSNESAVYDELMIHFPCQPLPHISNDIIGLEELDIVYNF
                     FQKKQWNEIANNLKIKDNSYALELGITFLPEKVFCYYIPLYIYVSLFNKNDFWVFESD
                     FIQQYLCPEYRDYDDFLNFVFNFSDIQLSIIAQFMSYESDAGFFYASKACMDFWEDYS
                     PLLHKKI"
     gene            822..>994
                     /locus_tag="OQQ76_004220"
     CDS             822..>994
                     /locus_tag="OQQ76_004220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000171008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS domain-containing protein"
                     /protein_id="HCS1970456.1"
                     /translation="MTLAYRSLRIIHLYHCDYRGLPLTLISPDGATEWCAEYDEWGNL
                     LNEENPQHLQQLIR"
BASE COUNT          327 a          164 c          199 g          304 t
ORIGIN      
        1 atcctggagg taactgtagt ccccagaacc tgagtgactt acaaaatgaa aaaaacagat
       61 tatgtaacca gtctagagct tgcgctcctc agatgctgag aaaagaaata ttgagacggt
      121 acgagataaa tttggcgtgc gcttcggtca gaaagcagat taataatcag tgctttggtg
      181 gtggagataa ggcccatatg gaagaagaga ataaagcata taaaacagca gctgattgca
      241 gtggcttaat aaaatgaaaa aaataatttt ctctaacgag agtgcagtct atgatgaact
      301 tatgattcat ttcccatgcc agccattacc tcatatttca aatgatatta taggactgga
      361 ggaactggat attgtatata attttttcca aaagaaacaa tggaatgaaa tagccaataa
      421 tttaaaaata aaggataact cttatgcttt agagttagga attacattcc tccctgagaa
      481 agtattctgc tattacatcc ctctgtatat ttatgtctcg ttgtttaata agaatgattt
      541 ttgggttttt gaatccgatt ttattcaaca atatttatgt cctgagtatc gggattacga
      601 tgattttttg aattttgttt ttaatttttc agatatacaa ctatctatta ttgcacagtt
      661 tatgtcttat gaatcagacg ctggattctt ttatgcaagt aaagcttgta tggatttttg
      721 ggaagattat tcacctctat tacataagaa aatttaatcg taaaaggtat aaatggttta
      781 ataaaaaact tgtctactcg ttggagtaga tgaaaaataa gatgacgttg gcatatagat
      841 cactgcgaat aatccacctc taccactgcg actatcgcgg cctgccgctg acgcttatca
      901 gccctgacgg ggcaacagaa tggtgcgcag aatatgatga atggggcaac ctgctgaatg
      961 aagagaaccc gcagcacctg cagcagctta tccg
//
LOCUS       DAJVUN010000376          994 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.383, whole genome shotgun sequence.
ACCESSION   DAJVUN010000376 DAJVUN010000000
VERSION     DAJVUN010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.383"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..669)
                     /gene="ospC4"
                     /locus_tag="OQQ76_004221"
     CDS             complement(<1..669)
                     /gene="ospC4"
                     /locus_tag="OQQ76_004221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC4"
                     /protein_id="HCS1970457.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKTNPNKATKALQKNILRVTNSSS
                     SGISEKHLDHCANTVKNFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNNILNIKSFD
                     KIQSENIQTHKNTYSEDIKKISNHDFVFFGVEISNHQEKLPLNKTHHTVDFGANAYII
                     DHDSP"
BASE COUNT          294 a          155 c          181 g          364 t
ORIGIN      
        1 tggagagtca tgatcaatga tatacgcatt ggcgccaaaa tctacagtat gatgtgtttt
       61 atttagtggg agtttttctt gatgattgga aatttcaacc ccaaaaaaaa caaaatcgtg
      121 gttagagatt tttttaatat cctcagagta tgtattctta tgtgtttgta tattttcaga
      181 ctgaatttta tcaaaggatt taatattaag aatattattt gacagattag agttactttg
      241 atgtctgaag ttaaaattag aattaataat aatagaaagt aagtgacgtt cgtctgaaga
      301 aagaggatga actttttgta ttatctcaga gatatagtgc ctggacacct tatcgagatg
      361 ctcaagtgac cgaaatgatg accgtgctcc agatggcgct tcaatagaaa gatttagtga
      421 tttgaaactg gtcccttgag aaaacatttt gctataactt tgcgctgcta tagacttcct
      481 taaaaagttt ttcacagtat tagcacagtg atctaaatgt ttttcactta tgccagaaga
      541 agatgagttt gttacgcgta atatattttt ttgtaatgct tttgttgctt tattcggatt
      601 cgtttttcca tcaacaagat caatattatt ctgaacatta atatgattta ctgcttcagg
      661 tattttcatc ccccccccaa ttatgtgcgt ttttatctgt ggttatttag ataacattat
      721 ctaactggac actttcttgt atgtattata gctaaatgaa cagattttaa tatgttgtat
      781 ggttttcact ctgaaatccc ctgaatttaa tcacgtttcc tttacggaag gcaattttaa
      841 ccgtagtatc aattattaac ccttgggctt gatatccctc tcctcttctg ggcacggggg
      901 atgtcagatt acttattaca gaaaccaaaa gaattgtaag cgtcatctca gtgtcgtcta
      961 tttcaatgtc tgatgattgg cgatgataga gtcc
//
LOCUS       DAJVUN010000377          985 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.384, whole genome shotgun sequence.
ACCESSION   DAJVUN010000377 DAJVUN010000000
VERSION     DAJVUN010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.384"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(62..871)
                     /locus_tag="OQQ76_004222"
     CDS             complement(62..871)
                     /locus_tag="OQQ76_004222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000161640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin"
                     /protein_id="HCS1970458.1"
                     /translation="MTKISERWKHNGITEGYCNICGKYGLLTKDHVPPKCAITLGPVL
                     QKTVSEFFGIQEPVKPLNAKNGSYFRTICSHCNNKVLGGLDVAIENVTKSFKEQLSRY
                     MNGMNVYPFIRIPFDSISFTKAMIGHVLSATSVEDCKKEPVDSPFYTPLKDYVLGKNS
                     SFEETHDIYYWFYPHRMHISAQSVAFMNEGHVAFICALHFFPIGFIITMKNEGTYPAH
                     STKLELEDKFLTFNMTSINYEYTTFPFVNLKGNQMYAISNGHTCVSYPIIK"
BASE COUNT          314 a          173 c          167 g          331 t
ORIGIN      
        1 agcggacatt atagatggta tatgtagaaa gtgaacatgc gtagattgta tgatttagcc
       61 gtcacttaat tattggataa ctcacacaag tatgaccgtt gcttatcgca tacatttggt
      121 ttcccttaag atttacaaat ggaaatgtcg tatactcata atttatagag gtcatattaa
      181 atgtaaggaa tttatcttca agttctaatt ttgtagagtg ggcagggtat gttccttcat
      241 ttttcattgt gataataaaa ccgataggaa aaaaatgtaa agcacaaata aatgccacat
      301 gtccttcgtt cataaatgct acactttgag cggatatgtg cattctgtgt gggtaaaacc
      361 agtagtaaat atcatgagtt tcctcaaaac ttgaattttt acccaaaaca taatccttta
      421 aaggtgtata gaaggggcta tctacgggtt cttttttaca atcttcaact gaagttgctg
      481 atagcacgtg cccaatcata gccttagtga aagatatgct atcaaaaggt attctaatga
      541 atggatatac attcatacca ttcatatatc gacttaactg ttctttaaag gactttgtta
      601 cattttcaat tgcaacatcg agcccaccta ataccttatt gttacagtgg ctgcaaatgg
      661 ttctgaaata agagccattt ttagcattta atggtttaac tggttcctga ataccaaaaa
      721 attcgctaac tgttttctgc aaaacagggc ctaaggttat ggcgcacttt ggaggaacat
      781 gatcttttgt gagcaagcca tatttcccac aaatattgca ataaccttca gtaatgccat
      841 tgtgcttcca tcgttcacta attttcgtca tttttattcc ctcagtagca taagctatct
      901 atacgttttt taatcctatc aaagatacaa cttaacgtca ggaaaatgat agtgtttatc
      961 taagtaatac aattaacttc aacgc
//
LOCUS       DAJVUN010000378          968 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.385, whole genome shotgun sequence.
ACCESSION   DAJVUN010000378 DAJVUN010000000
VERSION     DAJVUN010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.385"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(3..485)
                     /locus_tag="OQQ76_004223"
     CDS             complement(3..485)
                     /locus_tag="OQQ76_004223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCS1970459.1"
                     /translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
                     RTFVICLEDTLRVVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCTQGH
                     GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
                     "
     gene            complement(476..778)
                     /locus_tag="OQQ76_004224"
     CDS             complement(476..778)
                     /locus_tag="OQQ76_004224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HCS1970460.1"
                     /translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
                     DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
BASE COUNT          295 a          238 c          194 g          241 t
ORIGIN      
        1 actcagactt tataaaacaa ggtattaggt gccacaactg actgaacaaa accaaaacgc
       61 tcataaaatg ctctggcgtc atcatcaatt gcatgtacca taacagcctt aatgccaacc
      121 tgatcagcca gattgacaac ccggtgaatg gcatcactta gtagccattt accgaaacca
      181 tgcccctggg tacaaacatc aacagccaga cgccctaaca gaacaacagg gacaggattg
      241 ggcatgttat gccgcaaact gcgaccaagc tcggcatgag tgacggaacc agtagctaat
      301 gagtagtatc ccacaacacg taaagtatcc tccaagcaaa taacgaacgt gcgagaagca
      361 ttgagcatct ggtttttcat agcccgacca cgtaaccagt tacttagcac ctcatttcca
      421 cagtcaaatg gctgaagtat atgctcatcc gtcaacaatg ctggcgcggt gacatttatt
      481 tccattcagg ctttaccgcc atcagacgtt cacgcccttc tgcattctgc acaggagctt
      541 ccagttgcgt aataaacgaa tcataacgtt cgttatccag cacaaataaa cgttgatcca
      601 agataatgtt tttagcttcc tggtacgcca gttccatgat gaaatcggta cggttcttat
      661 tgaccaagct cgcagcataa tcaataacgg ctcgttcctc atcagttgcc cggatgttaa
      721 tctgatgttc tcgcggtgtt ttacggacgc ttgcagctgt agacataaaa acctccattg
      781 gtaacaattt gctatgcaat taatgttatc gcaaatggta acagaacgct atacagaatc
      841 acttacggga aaagcgatcc cctgataaaa acaatggcag agacctgaac attgtgacga
      901 tgatctgtgt cggcgcacaa atcatgtctg attacggccg tttaatgtga ttttgataat
      961 gaaatgcc
//
LOCUS       DAJVUN010000379          967 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.386, whole genome shotgun sequence.
ACCESSION   DAJVUN010000379 DAJVUN010000000
VERSION     DAJVUN010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.386"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..484
                     /locus_tag="OQQ76_004225"
                     /pseudo
     CDS             1..484
                     /locus_tag="OQQ76_004225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225871.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
     gene            514..>967
                     /locus_tag="OQQ76_004226"
     CDS             514..>967
                     /locus_tag="OQQ76_004226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000755097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HCS1970461.1"
                     /translation="MKKVFAKSLLVAAMFSVAGSALAVQKDITVTANVDAALDMTQTD
                     NTALPKAVEMQYLPGQGLQSYQLMTKIWSNDVTKDVKMQLVSPAQLVQSLDASKIVPL
                     TVTWGGEEIKADAATTFTATKIFASDALTNGSLAKNLMFAQTTKGVLET"
BASE COUNT          314 a          190 c          210 g          253 t
ORIGIN      
        1 cggtgatgca aatcatctgg ttgttatgcc acctaaattc gctttaccag ccggtagtag
       61 caaaactgtg cgctttgttg caatggaacc agagcaaaaa gaaaaaaatt aacgcgttaa
      121 atttgaagcg gttcccagta ttgatgacgt tgccacagat aaaaaagatt tctctatgca
      181 gttaacagtt agcttaattt gggggattgt tgttagtgtt ccacctcagc aacctattgc
      241 taagttagaa gtaaatgctg cccaaaaatt agttaatgca gggaatcaac gcttaaagat
      301 tttaacgatc gcttattgta aaaataatag caaagaaaat tgtaagatac agaccgtaaa
      361 taaaaacatc ttccctggtc aggaaagaaa tcttgaaagc atatctggct acgacaaaat
      421 cgttgtcaaa tataataact ggatcaccaa agataatggc gagtttgaac tggcggtcca
      481 ttaattatca ttgtaataaa cgaaggaata gtaatgaaaa aggtatttgc aaaatctctt
      541 ctggtcgcag cgatgttttc tgttgcaggc tccgcattgg cagtacaaaa ggatattact
      601 gtaacggcca acgttgatgc cgctctggat atgacacaga ccgataacac cgcgttgccg
      661 aaagcagtag aaatgcaata tctgccgggg cagggtctgc aatcttacca gttgatgacc
      721 aaaatctggt ctaacgacgt taccaaagat gtaaaaatgc agttagtttc cccggcgcaa
      781 ctggttcaaa gcctggatgc tagcaagatt gttccgctga cagtaacctg gggcggtgaa
      841 gaaattaaag ctgatgcggc aaccactttt accgcaacca aaatctttgc ttccgatgcg
      901 ttaactaacg gttctctggc taaaaacctg atgtttgctc aaaccaccaa aggtgttctg
      961 gagacag
//
LOCUS       DAJVUN010000380          965 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.387, whole genome shotgun sequence.
ACCESSION   DAJVUN010000380 DAJVUN010000000
VERSION     DAJVUN010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.387"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..228
                     /locus_tag="OQQ76_004227"
     CDS             <1..228
                     /locus_tag="OQQ76_004227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS1970462.1"
                     /translation="LMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETVLTYYKSGTF
                     ATEAIRWPDSVDEHKKANAFAGTALSHAALP"
     gene            286..>965
                     /locus_tag="OQQ76_004228"
     CDS             286..>965
                     /locus_tag="OQQ76_004228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HCS1970463.1"
                     /translation="MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKI
                     TGKTPVAAYVSPIVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLN
                     DPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGDQFDTVEVDFGRSEGN
                     NIEQADGKKWSEQDRDTFDPTHDIDLYCDQASGLVNIAIMDGTVWRLLNGFKLFREKL
                     DTRRGSNS"
BASE COUNT          238 a          233 c          280 g          214 t
ORIGIN      
        1 ctgatgctgg atgaagccac cgggaaactg gtggtctggg atggacagaa agccggtagt
       61 gcggttggca tactggtact gccgcttgaa ggcacagaga cggtgctgac ctattacaag
      121 tcggggacct ttgcgacgga ggcaatccgc tggcctgaca gtgtggatga acacaaaaag
      181 gcaaatgcct ttgccggcac agccctgagt cacgcggcgc tgccgtaaca cgttatcagg
      241 ccaccatggt ggcctgactg atttctgaat gaaaggaact gatttatggg attgtttacg
      301 acccgccagt tactcggtta taccgaacaa aaagtgaaat tccgtgcgct gtttctggag
      361 ctgtttttcc gccgtacggt gaatttccac accgaagagg tgatgctgga caaaattacc
      421 ggaaaaacgc cggtggcggc ctatgtctcc ccgatcgttg aaggaaaagt gcttcgccat
      481 cgcggtggtg aaacccgcgt gttacgtccg ggctacgtca agccgaaaca cgaatttaat
      541 taccagcagg cggttgagcg ccttcctggt gaagatccgg ctcagctgaa cgacccggcc
      601 taccgtcgtc tgcgtatcat taccgataac ctcaaacagg aagagcacgc cattgtccag
      661 gtggaagaaa tgcaggcggt gaatgccgtg ctgtatggca aatacaccat ggaaggggat
      721 cagtttgata ctgtcgaggt ggatttcggg cgctctgaag gaaataacat tgagcaggct
      781 gacggtaaaa aatggtctga gcaggaccgt gatacgtttg atccgacgca tgatattgac
      841 ctctactgcg atcaggccag cggccttgtg aatatcgcca ttatggacgg tacggtctgg
      901 cgtctgctga atggctttaa gctgttccgc gaaaaactgg atacccgtcg cggctcaaat
      961 tcaca
//
LOCUS       DAJVUN010000381          963 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.388, whole genome shotgun sequence.
ACCESSION   DAJVUN010000381 DAJVUN010000000
VERSION     DAJVUN010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.388"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            152..963
                     /locus_tag="OQQ76_004229"
                     /pseudo
     CDS             152..963
                     /locus_tag="OQQ76_004229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313048.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SopA family protein"
BASE COUNT          312 a          139 c          171 g          341 t
ORIGIN      
        1 cattaccatt ttttatagta cttcacttct tcttcactaa gaatgtccat tatctcaatg
       61 ccttatcaga gattcttttc ctttcgccgg tagtgtctgg acgctcaggc tacttttcca
      121 ggttatttta tttctgtatt acagaggttt tatgataggt catatcacaa attctggtgg
      181 caataactct ttgatgaaac atgatgtggt tcaaggaaat aatatagtag atcttgattt
      241 actacgtaat ttcaatgggg tgacaggttt aaacagagat aactttattt atatcagtga
      301 tatattttta aatataaaac aacggaacga aaaaatcatg caataaatat gttacgtgaa
      361 gtctcaatta gtaatgatac tataagtgta aaattctaca gaaatgaaaa aatagaatgc
      421 gcttgtaatc ttctgatgga taaagatgcg caggggtata tcgacctgtc tgattttgat
      481 gtaacaaatt gtcattttaa aggtgacgtt atttctaagg tgtctttttt atcatcaaat
      541 ctacaacatg taactttcga atgtaaagaa attgagaatt gcaattttac taaggcaaca
      601 gttgataatg ttatatttaa atgtcgacgt ttacacaatg tgatttttct caaaacgagt
      661 ggcgaatgtg ttgattttag ccaaaatatt cttgatacag ttgacttctc gcagagtcaa
      721 cttggtcata gtaattttcg cgaatgtcag attagaaatt caaacttcga taattgttat
      781 ctttacgctt cgcacttcac cagagcagag tttctgtctg ccaaagaaat atcatttatt
      841 aaatcgaatt tgacagctgt tatgtttgat catgtgcgaa tgtcgacagg gaatgttaaa
      901 gattgcatta cagaacaatt ggaattaact attgattatt cagatatatt tgggaatgaa
      961 gat
//
LOCUS       DAJVUN010000382          959 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.389, whole genome shotgun sequence.
ACCESSION   DAJVUN010000382 DAJVUN010000000
VERSION     DAJVUN010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.389"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..959
                     /locus_tag="OQQ76_004230"
                     /pseudo
     CDS             1..959
                     /locus_tag="OQQ76_004230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-mannosidase"
BASE COUNT          249 a          223 c          253 g          234 t
ORIGIN      
        1 agccggcaag ttgattatcg gcccctggta tacccagacc gataccacga ttgtttctgc
       61 ggaatccatc gtccgtaatc tgatgtacgg aatgcgtgac tgcctcgcgt ttggcgagcc
      121 gatgaaaata ggttatttac cagattcctt tggcatgtcc gggcaactgc cgcatatcta
      181 caatggattt ggcattaccc gcaccatgtt ctggcgcgga tgttcggagc gccacggtac
      241 tgataaaacc gagtttttgt ggcaaagcag tgacggtagc gaagtgacgg cgcaggtgct
      301 gccgctgggc tacgccatcg gtaagtactt acctgccgac gaaaacggat tacgtaaacg
      361 cctcgacagt tattttgacg tgctggaaaa agcgtctgta accaaagaga ttttgctgcc
      421 gaatggtcat gaccagatgc cattgcagca aaatatcttc gaagtgatgg ataagctacg
      481 tgagatctac cctcaacgta agtttgtgat gagccgcttt gaagaggtat ttgagaagat
      541 cgaagcgtag cgtgaaagtc tggccaccct gaaaggtgaa tttatcgatg gcaaatatat
      601 gcgcgtacat cgcaccatcg gttccacgcg catggatatc aaaattgccc acgcacgtat
      661 tgaaaataag attgttaatc tgctggaacc gctggcaacg ctggcctgga cgttgggttt
      721 tgaataccac cacggcttgc tggagaaaat gtggaaagag atcttaaaaa atcatgccca
      781 cgacagtatc ggttgttgtt gcagtgacaa agttcatcgc gaaattgtcg cccgcttcga
      841 actggctgaa gacatggcgg ataatctgct gcgtttctac atgcgcaaaa ttgccgataa
      901 catgccacag agtgatgccg acaaactcgt gctgtttaac ctgatgccct ggccgcggg
//
LOCUS       DAJVUN010000383          945 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.390, whole genome shotgun sequence.
ACCESSION   DAJVUN010000383 DAJVUN010000000
VERSION     DAJVUN010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.390"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..305)
                     /locus_tag="OQQ76_004231"
     CDS             complement(<1..305)
                     /locus_tag="OQQ76_004231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial-like protein"
                     /protein_id="HCS1970464.1"
                     /translation="MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIK
                     PGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANT"
     gene            complement(589..879)
                     /gene="ubiK"
                     /locus_tag="OQQ76_004232"
     CDS             complement(589..879)
                     /gene="ubiK"
                     /locus_tag="OQQ76_004232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis accessory factor UbiK"
                     /protein_id="HCS1970465.1"
                     /translation="MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRL
                     DLVSREEFDVQTQVLLRTREKLALLEQRMSELENRSTEIKKQPDPETLPPTL"
BASE COUNT          273 a          170 c          188 g          314 t
ORIGIN      
        1 atagtattcg ctgtggtgaa agtaaccttc gcttttgaat aagtggttcc accctggctc
       61 aacatgcagt cttgcaggtg aatagtgaaa ggctcagcca aagatttctg gtcgcttttc
      121 agaacggtat ctgctacttc acccagattt acagttaagt cttcgtcacc tggtttaatt
      181 gaacatggag cagagataac ttcaccttta aatttaacaa tgccgtgacc ttcgtcagca
      241 aatacgttat tggaaagaat cattgctacg ccagcaacaa gaagtgactt tttaaaagca
      301 gacataatat tcctttatat aaatataagt agaaaatgaa tgattagtaa ctgttattta
      361 aggattgcta atcattcaaa tattatattt tacttttcgg gttttatgaa attagtttat
      421 ctaaatatgg attaagtaaa acttaaaaaa atacataaca attatatttt caattgcact
      481 cattcatttt tgtgatgata ttctgaatgg aattaagcga taaggtaata gaaagcactg
      541 taaattagaa gattaattca taatttacag tgcattaaag acaaatgttt acagcgttgg
      601 ggggagagtc tctggatctg gctgcttttt aatctcagta ctgcgatttt ccagttcgct
      661 cattctttgt tcaagcagcg ccagtttctc acgagtccgt aacaggactt gcgtttggac
      721 gtcgaactct tcacggctta caaggtcgag gcgcgtcagc tgagcttgta gggtttggcg
      781 gatttttttc tccacatctt ccccgaactc cctgattcct ttaggcattg attcgtgaac
      841 ctggcgagcg atttgctcaa tttttttcgg gtcaatcatt gtagtttccc tgtactgata
      901 ggtgttgagt accattgtag tgcgataagg gtaagtcata aacca
//
LOCUS       DAJVUN010000384          928 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.391, whole genome shotgun sequence.
ACCESSION   DAJVUN010000384 DAJVUN010000000
VERSION     DAJVUN010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.391"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..579
                     /gene="rcnA"
                     /locus_tag="OQQ76_004233"
     CDS             <1..579
                     /gene="rcnA"
                     /locus_tag="OQQ76_004233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt efflux protein RcnA"
                     /protein_id="HCS1970466.1"
                     /translation="AQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYE
                     HHHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGL
                     IPCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGF
                     NTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR"
     gene            798..>928
                     /gene="rcnB"
                     /locus_tag="OQQ76_004234"
     CDS             798..>928
                     /gene="rcnB"
                     /locus_tag="OQQ76_004234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310940.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II) efflux transporter accessory
                     subunit RcnB"
                     /protein_id="HCS1970467.1"
                     /translation="MTIKNKMLLGALLLVTSAAWAAPATAGSTNTSGISKYELSSFIA
                     "
BASE COUNT          225 a          230 c          223 g          250 t
ORIGIN      
        1 gctcaatcag cagaaccgtg gctccagctg atttccgcag tgatcattat tagcaccgcg
       61 ttctggatgt tctggcgtac ctggcgcggc gaacgcaact ggctggagaa tatgcacggg
      121 catgattatg agcatcatca tcacgatcac gaacatcacc acgaccatgg acatcatcac
      181 catcacgaac atggcgagta tcaggatgcc catgcacgag cccatgccaa tgacattaaa
      241 cgacgctttg atggtagaga ggtcaccaac tggcaaattt tgttatttgg cttaaccggt
      301 ggccttatcc cctgcccggc agcaattacc gtgctgttga tatgcattca gttgaaagcc
      361 ctgacactgg gcgcaacact ggtcgtcagt ttcagcattg gcctggcgtt aacgcttgtc
      421 accgtaggcg ttggcgcagc aatcagcgtt cagcaggtcg caaaacgctg gagcggattt
      481 aacactctcg ctaaacgcgc cccctatttt tccagtctgt tgattggctt agtcggtgtg
      541 tatatgggcg tacatggctt catgggcata atgcgataac tcaatccttt aggcttgcat
      601 gttatcttca gcccaggatg attcttaaat cagctatttc cgctgactct ctgctcgcta
      661 aggatgcttt tagggcatcc tttcatttac actttttacg aaatcatggg atcactaaca
      721 aaatatcgct tgtcagttat attgtatggc aggaaagata tgcgactgat attacagatc
      781 cccaaagtgg agagtttatg accattaaaa ataagatgtt gctgggtgcg cttttgctgg
      841 ttaccagtgc cgcctgggcc gcaccagcca ccgcgggttc gaccaatacc tcgggaattt
      901 ctaagtatga gttaagcagt ttcattgc
//
LOCUS       DAJVUN010000385          923 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.392, whole genome shotgun sequence.
ACCESSION   DAJVUN010000385 DAJVUN010000000
VERSION     DAJVUN010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 923)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.392"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..164
                     /locus_tag="OQQ76_004235"
     CDS             <1..164
                     /locus_tag="OQQ76_004235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA packaging protein"
                     /protein_id="HCS1970468.1"
                     /translation="DDVKAVRVRKCLQVMGYCPETGRPVELALRGMCVLVPSSLATAM
                     IQHGTAEYA"
     gene            157..510
                     /locus_tag="OQQ76_004236"
     CDS             157..510
                     /locus_tag="OQQ76_004236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970469.1"
                     /translation="MRDFQNAFDAALAGVDSTIVEVMGLCAQFTSGAQCGSEVQGVFD
                     DPESLGFTGGGVRIEGSSPSLFVRTDTVRAVRRGDTLTINGEIFWVDRVSPDDGGSCY
                     LWLNRGQPPAVNRRR"
     gene            526..>923
                     /locus_tag="OQQ76_004237"
     CDS             526..>923
                     /locus_tag="OQQ76_004237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970470.1"
                     /translation="MAIKGLDQAIDNLSRVRKNAIPAASAMAINRVATTAINQSSSQV
                     ARETKVRRKLVKERSRLKRATVRNPNARIIVNRGDLPVIKLGIRMLGRRPNSILKAGQ
                     HRYQRAFIQRLKNGRWHVMQRVAGKNRYPI"
BASE COUNT          206 a          212 c          295 g          210 t
ORIGIN      
        1 cggatgatgt taaagccgtc cgggtacgga agtgcctgca agtaatgggg tattgcccgg
       61 agacaggtcg tcccgttgag ctggcgttac ggggtatgtg tgttctggtg ccatcatcac
      121 tggcaacggc catgatacag cacggaacgg ctgaatatgc gtgattttca gaatgccttt
      181 gatgctgccc tcgccggggt agacagtacg atcgttgaag tgatggggct ctgtgcgcag
      241 ttcacctcgg gggcacagtg tggcagcgaa gttcaggggg tttttgatga tccggagtcg
      301 ctggggttta ccggtggcgg ggtccgtatt gaaggaagca gcccgtcatt atttgtgcgg
      361 acggatacgg ttcgtgccgt gcggcgtggt gacacgctga ccattaatgg tgagatattc
      421 tgggtggatc gtgtttctcc ggatgacggg ggcagctgtt atctctggct caaccgtggt
      481 caaccacccg cagttaaccg gcgacgataa acgcagggtg aaattatggc gataaaaggg
      541 cttgatcagg cgattgacaa tctgagccgg gttcgtaaaa acgccattcc ggcggcttca
      601 gcaatggcca ttaaccgcgt ggccacaacg gcgattaatc agtcttcatc acaggttgcc
      661 cgggagacaa aggttcgccg gaaactggtt aaggaacggt ccagactgaa acgggcgacg
      721 gtcagaaatc cgaatgccag aattatcgtt aaccgcggtg atctccctgt gattaagctg
      781 gggatcagga tgctggggcg tcgcccgaac agcatactta aagccggtca gcatcggtat
      841 cagcgggcat ttattcagcg attaaaaaat ggtcgctggc atgtcatgca gcgtgtggcc
      901 gggaaaaacc gttaccccat tga
//
LOCUS       DAJVUN010000386          921 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.393, whole genome shotgun sequence.
ACCESSION   DAJVUN010000386 DAJVUN010000000
VERSION     DAJVUN010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.393"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(1..194)
                     /locus_tag="OQQ76_004238"
                     /pseudo
     CDS             complement(1..194)
                     /locus_tag="OQQ76_004238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309113.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(410..790)
                     /locus_tag="OQQ76_004239"
     CDS             complement(410..790)
                     /locus_tag="OQQ76_004239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein Q"
                     /protein_id="HCS1970471.1"
                     /translation="MRDIQMVLERWGAWAASGNTGVDYSPIAAGFKGLLPSATKPRPA
                     CCDDDGLIIENCLARLKQKKPEEYSLLIAHYLLRISKRQIARTRKKSEKAIRIEMQIA
                     EGFIDGCLSVLGVRLEMDDWLLKK"
     gene            complement(808..>921)
                     /locus_tag="OQQ76_004240"
     CDS             complement(808..>921)
                     /locus_tag="OQQ76_004240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001764249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HCS1970472.1"
                     /translation="HHDELHADTVAFEEKYGSQLELIFRFIDRALAIGVLS"
BASE COUNT          236 a          253 c          185 g          247 t
ORIGIN      
        1 gactgaaggc gtctgtaaca accgaactga tagtctgcca gacccgccat aacaagttgg
       61 gtcagtatta actgacagcg ttcgcgtgaa aggtaagtat tctgcgcaat ctccccgact
      121 gtcgccggtt cggtgacgct taattcatta aacaccactc tggcggtttc tgtcatatcc
      181 tgctgtttca gcatgtcttt ttcccttttc cggttaacgt gacacaccaa taactcttgt
      241 cgaaaaagcc agcaagctga aagacaggta ttcaccgcca ccagcacgtt tactgtactg
      301 gaccgatttc agccataaaa aaacccgctc gcggcgggtt taagctgtgt ggcgaagtaa
      361 ccactcttaa catactgaca tactttttgc ggaccgcact aatcattttt tactttttta
      421 gcagccagtc gtccatctcc agtcttaccc ccagcacaga caaacatccg tcaataaacc
      481 cttcggctat ctgcatctca attcgtattg ctttttcgct tttctttctc gtcctggcta
      541 tctgtctttt tgatattcgc aacaaataat gagcaatgag aagcgaatac tcctcaggtt
      601 ttttctgctt cagacgagca agacagtttt caatgataag tccgtcatca tcgcagcagg
      661 ccggacgtgg tttagtggca gatggtaaaa gtcctttgaa tccggcagcg atcggagaat
      721 agtccacccc ggtgttacca cttgcagccc atgcccccca gcgttcaaga accatctgaa
      781 tatcacgcat caactttctc cacaaaatca ggacagcaca ccaatcgcca gcgcgcgatc
      841 gataaaacga aatatcagct ccagttggga gccatacttc tcttcaaatg ccacggtatc
      901 cgcatgcagt tcgtcatggt g
//
LOCUS       DAJVUN010000387          918 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.394, whole genome shotgun sequence.
ACCESSION   DAJVUN010000387 DAJVUN010000000
VERSION     DAJVUN010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.394"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>918
                     /locus_tag="OQQ76_004241"
     CDS             <1..>918
                     /locus_tag="OQQ76_004241"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000398460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HCS1970473.1"
                     /translation="FDECLKQGMEPVVTLSHFEMPYHLVTKYGGWRNRKLIDFFIRFA
                     STVFTRYKEKVKYWMTFNEINNQVNFSESLCPFTNSGILYSPEEDINEREQIMYQAVH
                     YELVASALAVQTGKSINPEFNIGCMIAMYPIYPLTCVPNDMMMATKAMHRRYWFTDVH
                     ARGYYPQHMLNYFARKGFNLDITPEDNAILASGCVDFIGFSYYMSFTTQFSPDNPQLD
                     YVEPRDLVSNPYIDTSEWGWQIDPAGLRYSLNWFWDHFQLPLFIVENGFGAVDQRQAD
                     GTVNDHYRIDYFASHIREMKKAVVEDGVD"
BASE COUNT          251 a          195 c          210 g          262 t
ORIGIN      
        1 tgttcgatga atgccttaag cagggaatgg aacctgtggt gacgctttca cattttgaga
       61 tgccttatca tctggtgaca aaatatggtg gctggcgaaa ccgtaaactg atcgactttt
      121 ttatccgctt cgcatcaacg gtcttcacgc gctataaaga aaaagtaaag tactggatga
      181 cgtttaacga aatcaataat caggtgaatt tcagcgaaag cctgtgtcca tttactaatt
      241 ccggtatctt gtattcgcca gaggaagata tcaatgagcg cgaacaaata atgtaccagg
      301 cggtacatta cgagttagtt gccagtgccc tggcggtaca gactggaaaa tcgatcaatc
      361 ctgaatttaa cattggctgt atgatcgcca tgtatcccat ctatcctctg acgtgtgtac
      421 ccaacgatat gatgatggcc acgaaagcaa tgcatcgtcg ttactggttt actgatgttc
      481 atgctcgtgg atattatccg caacatatgc tgaattactt tgccaggaaa ggattcaacc
      541 tcgatatcac accagaagat aacgcgattc ttgccagtgg ttgtgtcgac tttatcggct
      601 ttagctacta catgtctttt acgacacaat tttcgcccga taacccgcaa ctggattatg
      661 ttgaaccacg agatttggtc agcaaccctt atatcgatac atccgaatgg ggatggcaaa
      721 ttgatccggc agggctacgt tattcactca actggttctg ggatcatttc cagttgccgc
      781 tgtttattgt cgaaaatgga tttggtgcgg ttgaccagag acaagctgac ggcacggtga
      841 acgatcacta tcgcattgat tactttgctt cccatattcg ggaaatgaaa aaagccgtag
      901 ttgaagatgg tgttgact
//
LOCUS       DAJVUN010000388          847 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.396, whole genome shotgun sequence.
ACCESSION   DAJVUN010000388 DAJVUN010000000
VERSION     DAJVUN010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.396"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            73..759
                     /locus_tag="OQQ76_004242"
     CDS             73..759
                     /locus_tag="OQQ76_004242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016232851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HCS1970474.1"
                     /translation="MSFMAFVTCLTIAFIAGFAVARKLTLRKVASSVIIAKSQPVPSS
                     ATSPAAKASTRSYIPQKTYRDSRWQERDELFQGMVAEGILLERKEWLITRCEKMYFDN
                     LEKWFGHYCHIHCQASLGRLINFPEQPEFSEEERKRFFAIYNGMAMDYVLVSKKNNKK
                     VCVIELDDPSHERADRIIRDRWLDTIMTLARVPFVRASVTKLEEIPPVWETRDKIRPL
                     VAATKSEPVH"
BASE COUNT          238 a          170 c          199 g          240 t
ORIGIN      
        1 tggcatgtaa cacgctgcag cgagtaacat tggtaatgaa atataatcaa catggatagg
       61 tgaaaattaa ttatgagctt tatggctttt gtaacttgtt tgacaattgc atttatcgcc
      121 ggttttgctg ttgccagaaa attgacactc cgaaaagttg cctcatcggt aatcatcgct
      181 aaatcgcaac ccgtcccttc atctgcaact tcccctgccg ctaaggcgtc gacaaggagc
      241 tatataccgc agaaaaccta tcgtgactct cgttggcaag agcgagatga gttatttcag
      301 ggaatggttg ccgaaggtat tttattggaa agaaaagagt ggttaatcac tcgttgtgaa
      361 aaaatgtatt tcgataatct ggaaaaatgg tttggacatt attgtcatat ccattgccag
      421 gcctctctgg ggcgcttgat caactttcca gaacaacctg agtttagcga agaagaaaga
      481 aagcgtttct ttgcaattta taatggcatg gcaatggatt atgttctggt ttcaaagaag
      541 aacaataaaa aagtctgtgt tattgagctg gatgacccga gtcatgaaag ggcggatcgc
      601 attattcgtg accgttggtt ggatacaatt atgactcttg cacgggtgcc ttttgtacga
      661 gcttctgtca ctaaattgga ggaaattcct ccggtctggg agactcgtga caagattcgc
      721 ccattagtcg cggcgacaaa gagtgaaccg gtgcattaac taagtatccc ggtcggggct
      781 tctcatcccc ccggtgtgtg caatatacga aaaaaagccc gtaccttcgt acgagctctt
      841 ctttaaa
//
LOCUS       DAJVUN010000389          844 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.397, whole genome shotgun sequence.
ACCESSION   DAJVUN010000389 DAJVUN010000000
VERSION     DAJVUN010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.397"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..346
                     /locus_tag="OQQ76_004243"
     CDS             <1..346
                     /locus_tag="OQQ76_004243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000902876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HCS1970475.1"
                     /translation="GIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAED
                     ERDALLAQVSARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFSAITDKSSYN
                     AIEWPVSPEGSS"
     gene            370..>844
                     /locus_tag="OQQ76_004244"
     CDS             370..>844
                     /locus_tag="OQQ76_004244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1970476.1"
                     /translation="MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTG
                     NNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDDSKPGTLKTANHLSEIAAAGEKA
                     QQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDF"
BASE COUNT          220 a          200 c          231 g          193 t
ORIGIN      
        1 aggcattgaa ccccgtaacg ccagtgttat tgaagttcct gatattaccg ccaaccgccg
       61 cattaccgcg ccgggttact ggttttaccg caatgatgaa tttgtctttg actacagact
      121 caaagcggaa gatgagcgtg atgcccttct ggctcaggtc agtgcccgga caggggaatg
      181 ggaagaagac ctgctgctgg ggctaatcag cgacgaagac cgggaaaaac tgaaagcgta
      241 ccgtatttac gcgaaatcgc tgcaggcgat ggatttcagc gccatcactg ataaatcctc
      301 atacaacgcc attgaatggc ccgtctctcc ggaaggttct tcctgattta atttatcgcg
      361 agaaaaacta tgtctgtagt gatatcaggt gcgctgactg atggcgcagg catccccatg
      421 tccggatgcc agattattct gaaatcccgt gtaaacacct cagaagtggt gatgcgtacc
      481 agggctgatg tagtgaccgg aaataacggt gaatattcgt ttgaggcaca ggtcggaaaa
      541 tattgcgtgt atctgaaacg ggactggcgc gacgagtact gtgttggcga cattgctgta
      601 tacgacgact caaagcccgg cactctgaaa acggctaacc atctgtctga aatcgcagca
      661 gcaggcgaaa aggcacaaca gaagtcccgg gataatctgg ggctgaaaag tgcggccacg
      721 atggaagcac agagcgacat ttacgaccgg acaaaaggcc gtctggcgat acccggcgca
      781 ttcggctttg ggtgtgcttt tctgcctgaa gatgttatcc gttttgacac taagagtgat
      841 ttcc
//
LOCUS       DAJVUN010000390          838 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.398, whole genome shotgun sequence.
ACCESSION   DAJVUN010000390 DAJVUN010000000
VERSION     DAJVUN010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.398"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..570)
                     /locus_tag="OQQ76_004245"
     CDS             complement(<1..570)
                     /locus_tag="OQQ76_004245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HCS1970477.1"
                     /translation="MSMPLSNALQSQIITDNHFLHHPKVDNKLTREYEYARMDTENIY
                     LLPLTRGNNHNYDGKSVVEIRKLNIGKQSWPFNYATDTCREFNGITTTGRMLYRNLKI
                     TSALDEIYGGICKKAHAATELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYA
                     GTTIGYISTLPASQAKRWTKEQPRIDIYID"
BASE COUNT          259 a          138 c          152 g          289 t
ORIGIN      
        1 atcaatatag atatcaattc ttggctgctc cttggtccat ctttttgcct gagaagctgg
       61 aagggttgaa atatatccta tcgtggttcc ggcataacca ggaacattgc aaccagggcc
      121 taatgttatt tcatgaactg tatagtcctc aacaggatcg aaagggctct tcataaataa
      181 atttagccgt aaaccttctg ctaactctgt agcagcatgc gcctttttac atataccacc
      241 atatatttcg tctaaagctg aggtgatttt caagtttcga tagagcatac gtcctgttgt
      301 tgtaatacca ttgaattctc tgcatgtatc tgtcgcataa ttaaatggcc aggactgttt
      361 gccaatatta agttttctaa tttcgacaac gctttttcca tcgtaattat ggttatttcc
      421 acgagtaaga ggcagaagat agatattttc cgtatccatg cgtgcatatt catattcacg
      481 tgttaactta ttgtcgactt ttggatgatg aaggaagtga ttatctgtaa taatttgact
      541 ctgaagggca ttgcttaatg gcatagacat aatagttacc ttttatgagt atttcaccga
      601 tgtttagaaa aatagataaa tttttctgta gtaaaaaaga agtaaaaaaa tgacatgcat
      661 gtttctgttg tagtgatatc aactctacac ggtgatatta aagggtagga aacactctaa
      721 agtatcaaaa aacgctcatt tgaaattatt ttcatgcaat taaaaagcat atcttattac
      781 taattggaat ttgatgttgc tatattgatg tctatattaa taatgcctat gaatggta
//
LOCUS       DAJVUN010000391          831 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.399, whole genome shotgun sequence.
ACCESSION   DAJVUN010000391 DAJVUN010000000
VERSION     DAJVUN010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.399"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(48..384)
                     /locus_tag="OQQ76_004246"
                     /pseudo
     CDS             complement(48..384)
                     /locus_tag="OQQ76_004246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502602.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          263 a          151 c          150 g          267 t
ORIGIN      
        1 ataaatatga aaagatggtt taaatacccc gttacttttg acttacacta tacggtatcg
       61 catcgtttaa tattcgcacc ggccagattt ttatttctat tagttgtcac aatactgaat
      121 gcgtacgacc acagtattct ggctcctgtg tggtcatgct ttaattctgc gttccggaca
      181 gataagcagt tgcttgcagg aatccttctt gtgttaatgt cagttcccct ttttaccagt
      241 gctgatttcc acattccgtc caacagagct tatagccttt ccctggatta tagcattgtc
      301 cggctgaagt tctttttgaa taataataga agcactgctg gcagatccag tccgtttttc
      361 ataacccact gtactgataa ccataatcta atcagtagaa attgagtcga aaataagcac
      421 tactccatac aggataatta gaggtcagtt tgattattca caattcatca tcagcatttt
      481 ctgtttctga cgaaatcaac atgaaaagaa ccatatatga taattattat aataacggct
      541 ttaattggaa tacatatatt acaacgtatt atatataatt ggtattctgg gaactatatt
      601 ctcaaaatac agtagaaacg aggtatgttt ctggtggaaa ggacagtggg attaaaaagt
      661 aagaattgat aaaaaaacgc cagcaacaca tagtgccggc ggagggaata ccccatggag
      721 aaaatgtgat gcctagagca ccatgaatat ataattaaaa atagttagcg ttgtcaatac
      781 tttcacaaaa ataattttcg tagtttcgta gtttcgtagt ttcgtagttt c
//
LOCUS       DAJVUN010000392          824 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.400, whole genome shotgun sequence.
ACCESSION   DAJVUN010000392 DAJVUN010000000
VERSION     DAJVUN010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.400"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            139..>824
                     /locus_tag="OQQ76_004247"
     CDS             139..>824
                     /locus_tag="OQQ76_004247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1970478.1"
                     /translation="MGKGGGKAHTPREAKDNLKSTQMMSVIDAIGEGPIEGPVKGLQS
                     ILVNKTPLTDTDGNPVIHGVTAVWRAGEQEQTPPEGFESSGAETGLGVEVTKAKPVTR
                     TITSANIDRLRVTFGVQSLVQTTSKGDRNPSSVRILIQLQRNGRWVTEKDVTINGKTT
                     SQFLASVILDNLPPRPFNIRMVRETADSTTDQLQNKTLWSSYTEIIDVKQCYPNTAIV
                     GLQVDAEQFGG"
BASE COUNT          202 a          200 c          257 g          165 t
ORIGIN      
        1 ttttatgcca ttaccggttt taaccaacag gattatcggt gggcatgaaa gaaatgtgtt
       61 tcatgctttt caggcgaagg atatccgact tctgtacgga atggcaagtg gcggttaatt
      121 tattcagggg aaggctgtat gggaaaaggt ggcggtaagg cacacacgcc tcgtgaggcg
      181 aaggataatc tcaaatccac gcagatgatg agtgtgattg atgcgattgg tgagggaccg
      241 atagaaggtc cggtgaaggg actgcagagt attctggtga acaaaacccc actgacggac
      301 acggacggca atcccgtgat acacggtgtg acggcggtct ggcgcgccgg ggagcaggag
      361 cagacaccac cggaaggctt tgagtcctcc ggagctgaaa ccggactggg cgtggaagtg
      421 acgaaggcaa aaccggtgac gcgcaccatt acgtccgcga acattgaccg cctgcgggtt
      481 accttcgggg tgcagtcact ggtgcagacc acgtcaaagg gcgaccgtaa tccttcctct
      541 gtccggattc tgattcagtt acagcgtaat ggccgctggg tgacggaaaa ggacgtcacc
      601 attaacggca agaccacctc acagttcctg gcctcggtga ttctggataa tctgcctccc
      661 cggcccttta acatccggat ggtcagggag acggcggaca gcaccacgga ccagctgcag
      721 aataagacgc tgtggtcgtc atacaccgaa atcatcgatg tgaaacagtg ctacccgaac
      781 acggccattg tggggctgca ggtggatgcg gagcagttcg gcgg
//
LOCUS       DAJVUN010000393          777 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.401, whole genome shotgun sequence.
ACCESSION   DAJVUN010000393 DAJVUN010000000
VERSION     DAJVUN010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.401"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>777
                     /locus_tag="OQQ76_004248"
     CDS             <1..>777
                     /locus_tag="OQQ76_004248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HCS1970479.1"
                     /translation="LPTNNNHRLISNSFSTYSIDTSRAYESYLTHWTEWKNNRIQEEQ
                     RDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQ
                     LNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELL
                     ETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPE
                     NLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQ"
BASE COUNT          256 a          187 c          113 g          221 t
ORIGIN      
        1 ctcccgacaa ataacaatca cagattaatt tcaaattcgt tctccactta ttcaatcgac
       61 actagccgcg catatgaaag ttatctaacc cattggactg aatggaaaaa taaccgcata
      121 caagaagaac aacgagacat cgcttttcag cgactagtat catgtctaca aaaccaagag
      181 acgaacctag acttgtctga attaggcctg acaacattac ctgaaatccc cccgggaatt
      241 aaatcaatta atataagtaa aaataattta agcttaatct ccccattgcc tgcgtccctt
      301 acacagctta atgtcagcta taacagactt attgaactgc ctgctttgcc tcaaggactt
      361 aaattattga atgcgtccca caatcaacta atcacactac ccacactccc catatctttg
      421 aaggagcttc atgtctcaaa taatcaatta tgttctcttc ctgttttacc agaactactg
      481 gaaacattag atgtatcatg taatgggctg gcagttttac cacctttacc attttcttta
      541 caagagatta gcgcaatagg gaatcttctt agtgaactcc cccctctacc tcacaacatt
      601 cactccatat gggcaatcga caatatgtta accgatattc catacctgcc ggaaaattta
      661 aggaacggtt attttgacat aaatcagata agtcatatcc cggaaagcat tcttaatctg
      721 aggaatgaat gttcaataga tattagtgat aacccattgt catcccatgc tctgcaa
//
LOCUS       DAJVUN010000394          777 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.402, whole genome shotgun sequence.
ACCESSION   DAJVUN010000394 DAJVUN010000000
VERSION     DAJVUN010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.402"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..190
                     /locus_tag="OQQ76_004249"
     CDS             <1..190
                     /locus_tag="OQQ76_004249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HCS1970480.1"
                     /translation="ACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIEL
                     LNKRLSESVPCMPHKKVG"
     gene            226..>777
                     /locus_tag="OQQ76_004250"
     CDS             226..>777
                     /locus_tag="OQQ76_004250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HCS1970481.1"
                     /translation="MPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDN
                     GVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLT
                     THLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIHDT
                     TRLWLEGWIASQQGWRIDVLAHSL"
BASE COUNT          212 a          198 c          197 g          170 t
ORIGIN      
        1 tgcatgctgg tcacttgccg ctggagctaa tcctagtttt atcgcaagcc agatgggcca
       61 cacaaacgca caaatggtat tcaatgttta cggagcatgg atgaaagaca acaatcacga
      121 acagatagaa ctccttaaca aaagactatc tgaaagtgtc ccatgtatgc cccataagaa
      181 agtggggtaa aataaaaact tgtaaaatca gttagtttac ccttaatccc tgtcacgtta
      241 cgcgcgtggc agaggcgtta cggattgctg aaaccgcaac ggacagacgg cggtcatcgg
      301 ctgttcaacg atgccgatat tgaccggatc cgcgagatca aacgctggat cgacaacggc
      361 gtgcaggtca gcaaagttaa aatgctgctc agtaatgaaa atgttgatgt gcagaacggc
      421 tggcgcgatc agcaagaaac attactgact tacttgcaaa gcggcaatct gcatagcctg
      481 cgaacgtgga tcaaagagcg cggtcaggat taccccgccc agacgctcac cacgcatttg
      541 tttattcctc tgcgtcgacg gcttcagtgc caacaaccga ctctccaggc gctgctggcg
      601 atcctcgacg gcgtactgat caactacatc gccatctgtc tggcttcggc acgtaaaaaa
      661 cagggtaaag atgcgctggt ggttggctgg aatattcacg ataccacccg tctgtggctg
      721 gagggctgga ttgccagtca acaaggatgg cgcattgatg tcctcgccca ctcgctc
//
LOCUS       DAJVUN010000395          769 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.403, whole genome shotgun sequence.
ACCESSION   DAJVUN010000395 DAJVUN010000000
VERSION     DAJVUN010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.403"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..686)
                     /locus_tag="OQQ76_004251"
     CDS             complement(<1..686)
                     /locus_tag="OQQ76_004251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HCS1970482.1"
                     /translation="MGKGGGRAHTPREAKDNLKSTQMMSVIDAIGEGPIEGPVKGLQS
                     ILVNKTPLTDTDGNPVIHGVTAVWRAGEQEQTPPEGFESSGSETVLGVEVTRAKPVTR
                     TITSANIDRLRVTFGVQSLVETTSKGDRNPSSVRLLIQLQRNGNWVTEKDVTINGKTT
                     SQFLASVILDNLPPRPFNIRMVRETADSTTDQLQNRTLWSSYTEIIDVKQCYPNTAIV
                     GMQVDAEQFGG"
BASE COUNT          152 a          238 c          192 g          187 t
ORIGIN      
        1 ccaccaaact gctccgcatc cacctgcatc cccacaatgg ccgtgttcgg gtagcactgt
       61 ttcacatcga tgatttcggt gtatgacgac cacagcgttc tgttctgcag ctggtccgtg
      121 gtgctgtccg ccgtctccct gaccatccgg atgttaaagg ggcggggagg cagattatcc
      181 agaatcaccg acgcaaggaa ctgtgaggtg gtcttgccgt taatggtgac atccttttct
      241 gtcacccagt taccgttacg ctgtaactga atcagcagac ggacagagga cggattacgg
      301 tcaccctttg acgtggtctc caccagtgac tgcaccccga aggtcacccg caggcggtca
      361 atgttcgctg acgtaatggt gcgtgttacc ggttttgccc tggtcacttc gacacccagt
      421 acagtttcag agccggagga ctcaaagcct tccggtggtg tctgctcctg ctccccggca
      481 cgccagaccg cggtcacacc gtgtatcacg ggattaccgt ccgtgtccgt cagcggggtt
      541 ttgttcacca gaatactctg caggcctttc accgggcctt ctatcggtcc ctcaccaatc
      601 gcatcaatca cgctcatcat ctgcgtggat ttgagattgt ctttcgcctc acgcggtgtg
      661 tgcgccctgc cgccaccttt gcccattaca tcacctctta ccgtgataat tgttcactca
      721 caaaaacaac aggcacctca ccgggtgcct gcgtcatgac ggaataaaa
//
LOCUS       DAJVUN010000396          727 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.405, whole genome shotgun sequence.
ACCESSION   DAJVUN010000396 DAJVUN010000000
VERSION     DAJVUN010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.405"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>727
                     /gene="ipaH3"
                     /locus_tag="OQQ76_004252"
     CDS             <1..>727
                     /gene="ipaH3"
                     /locus_tag="OQQ76_004252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase IpaH3"
                     /protein_id="HCS1970483.1"
                     /translation="NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLL
                     KECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNH
                     LSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRN
                     NQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL
                     SLDPTCTIILEDNPLSSRIRESLS"
BASE COUNT          216 a          189 c          122 g          200 t
ORIGIN      
        1 ataacttttc attgtcccaa aattcttttt ataacactat ttccggtaca tatgctgatt
       61 acttttcagc atgggataaa tgggaaaaac aagcgctccc cggtgaaaat cggaatgaag
      121 cggtctccct acttaaagaa tgtctcatca atcagttcag tgagcttcaa ctgaatcgtt
      181 taaatctgtc ctcgctacct gacaacttac cacctcaaat cactgttctg gaaattactc
      241 agaatgccct aatatcatta ccagaattgc cagcatcgct ggaatacctt gacgcctgtg
      301 acaatcacct gtcaacactt cctgaattac ccgcatctct gaaacatctt gatgtagata
      361 acaaccaact aaccatgctt cctgaattgc ctgcattgct ggaatatatt aatgcagata
      421 acaatcagct aaccatgctt cctgaattac ctacatcgct ggaagtgctc tcagtaagaa
      481 ataaccagct gacatttctt cctgagttac ctgaatcact ggaagcgctc gatgtaagta
      541 ctaatcttct ggaaagccta ccagccgtac ctgtaagaaa tcatcactca gaggaaaccg
      601 agatattttt ccggtgccgc gagaatcgca tcacacacat tccggaaaat atacttagcc
      661 ttgatccgac ctgcactatc atcctcgaag acaatcctct gtcctcacgg atcagggagt
      721 ctctgtc
//
LOCUS       DAJVUN010000397          725 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.406, whole genome shotgun sequence.
ACCESSION   DAJVUN010000397 DAJVUN010000000
VERSION     DAJVUN010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.406"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            68..>725
                     /locus_tag="OQQ76_004253"
     CDS             68..>725
                     /locus_tag="OQQ76_004253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HCS1970484.1"
                     /translation="MATPNPLEPVKGAGTTLWVYNGKGDAYANPLSDDDWQRLAKVKD
                     LTPGEMTAESYDDNYLDDEDADWNATGQGQKSAGDTSFTLAWKPGEEGQKGLIGWFES
                     GDVRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGKPSVAEERSKITP
                     VSAIKVTPTSGTVAKGKTTTLTVSFEPESATDKTFRAVSADPSKATISVKDMTITVNG
                     V"
BASE COUNT          196 a          160 c          224 g          145 t
ORIGIN      
        1 gacgatatgg cgttatggag ttctgcagat ctgacttatt ccattacata cgagatgtga
       61 ggacgatatg gcaacaccaa atccccttga gccggtaaaa ggtgccggta ccactctgtg
      121 ggtttacaac ggcaagggtg atgcttatgc aaacccgttg tcagacgatg actggcagcg
      181 actggctaag gtgaaggatc tgacgccggg cgagatgacg gcagaatcct acgatgataa
      241 ctacctggat gatgaagacg cggactggaa cgcgaccggg caggggcaga aatctgcagg
      301 tgataccagt tttacgctgg cctggaaacc gggagaggaa ggccagaaag ggcttatagg
      361 ctggtttgaa agcggcgatg tccgggccta taaaatccgt tttccgaatg gcacggtgga
      421 tgtgtttcgt ggctgggtca gcagtatcgg taaggccgtg acggcgaaag aagtgatcac
      481 ccgcacggtg aaagtcacta acgtgggtaa accttctgta gcggaagaac gcagcaaaat
      541 tacgccggtc agtgcgatta aggtgacgcc gacatccggt acggtggcaa aagggaaaac
      601 aaccaccctg acggtttctt ttgagccgga aagtgcaacc gacaagacgt tcagagcggt
      661 ttccgccgat ccgtcgaaag ccaccattag tgtgaaagat atgacaatta cggtaaacgg
      721 cgtgg
//
LOCUS       DAJVUN010000398          723 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.407, whole genome shotgun sequence.
ACCESSION   DAJVUN010000398 DAJVUN010000000
VERSION     DAJVUN010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.407"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>723
                     /locus_tag="OQQ76_004254"
     CDS             <1..>723
                     /locus_tag="OQQ76_004254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISSso6 family transposase"
                     /protein_id="HCS1970485.1"
                     /translation="DLARAWASARDDLRHARQRLKSFLLVHGVHYVGRADWGPAHRRW
                     LSKYSFESPWRQLAFDEHRRTIEDRQAQCERLESALKEAVTEWRLYPVVEALQAMRGI
                     QFITAVGLISELGDLTRFEHPRQLMSWFGITPSEYSSGGSRHQGSITKAGNSYARKLL
                     VEAAWSYRHPARISPAIQKRQENLPRPVIDRAWDAQLRLCKRYRKLQAKGKNVNITIV
                     AVARELAGFIWDMGRIAMSVAQQ"
BASE COUNT          190 a          168 c          200 g          165 t
ORIGIN      
        1 gatttggccc gggcatgggc atctgcccgc gatgatttac ggcatgcaag gcaacgtctg
       61 aaatcgtttc ttctggttca tggggtccat tatgtcgggc gagcagattg gggccctgca
      121 caccgacgct ggctcagcaa atactcattc gaaagtccct ggcgacaatt agcttttgac
      181 gaacaccgtc gtacaataga agaccggcag gcacaatgtg aacggctgga atccgccctg
      241 aaggaggccg ttaccgaatg gaggctgtat ccggtagtag aggcgctgca agccatgcga
      301 gggattcagt ttattactgc ggttggatta atttctgaac tgggtgatct gacccgtttt
      361 gaacatccac gacaactgat gtcatggttt ggtatcacgc catcagaata ttcatcgggt
      421 ggaagcagac atcagggcag cattaccaaa gccggaaaca gctatgccag aaagctattg
      481 gtcgaggcag cgtggagtta ccgtcatccg gcacgcatca gtccggcaat acaaaaaagg
      541 caggaaaatt taccccgccc cgtcattgac agagcatggg atgctcaact caggctttgt
      601 aagaggtatc gaaaacttca ggccaaagga aagaatgtca atattacaat tgttgctgtt
      661 gcacgtgagc tggcgggttt tatctgggat atgggccgaa tagcaatgtc tgtcgcacaa
      721 caa
//
LOCUS       DAJVUN010000399          722 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.408, whole genome shotgun sequence.
ACCESSION   DAJVUN010000399 DAJVUN010000000
VERSION     DAJVUN010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.408"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            89..>722
                     /locus_tag="OQQ76_004255"
     CDS             89..>722
                     /locus_tag="OQQ76_004255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970486.1"
                     /translation="MNQKYLIRIAELECQLRQKDQQLSLVEETEAFLRSALARAEEKI
                     EEDEREIEHLRAQIEKLRRMLFGTRSEKLRREVEQAEALLKQREQDSDRYSGREDDPQ
                     VPRQLRQSRHRRPLPEHLPREINRLEPEESCCPECGGELDYLGEVSAEQLELVSSALK
                     VIRTERVKKACTKCDCIVEAPAPSRPIERGIAGPGLLARVLTGKYCEHLPL"
BASE COUNT          200 a          184 c          205 g          133 t
ORIGIN      
        1 taagctggac tggcgtcagc caaaaacatc ccgccttaac gcactgacaa tgttgtaaaa
       61 atgtcatggc cggattataa aaacggccat gaatcaaaaa tacctcattc gcattgcaga
      121 actggaatgc cagctccgtc agaaagacca gcaactgagt ctggttgaag agacggaggc
      181 cttcctgcgc tctgcactgg cccgcgccga agaaaagatc gaagaagatg aacgggaaat
      241 agaacatctg cgggctcaga tagaaaaact gcgccggatg ctgttcggta cccgttctga
      301 aaaactgcgt cgtgaagttg aacaggctga ggccctgctg aaacaacgcg aacaggacag
      361 tgatcgttac agtgggcggg aagacgatcc gcaggttccc cgccagttgc gacagtctcg
      421 tcatcgtcgc ccgttaccgg agcatctgcc ccgcgaaata aatcgcctgg agccagaaga
      481 aagctgttgc ccggagtgtg gcggtgagct ggattatctg ggggaagtca gcgcagaaca
      541 actggaactg gtgagcagcg ctctgaaagt gatccgcaca gaacgggtaa aaaaagcctg
      601 tacaaaatgt gactgcatcg ttgaagcacc ggcaccatcc cgtccgatag agcgtggtat
      661 cgcgggcccg gggttacttg cccgcgtgtt aacgggaaaa tactgcgaac acctgccact
      721 gt
//
LOCUS       DAJVUN010000400          720 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.409, whole genome shotgun sequence.
ACCESSION   DAJVUN010000400 DAJVUN010000000
VERSION     DAJVUN010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.409"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            29..>720
                     /locus_tag="OQQ76_004256"
     CDS             29..>720
                     /locus_tag="OQQ76_004256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005137363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HCS1970487.1"
                     /translation="MKDRNGSGAKGLPHCADGAAATTGDNADGRTAVKSAKPFPVSKR
                     QVWEAYKRVKANRGAAGIDGQTLAGFDENVTDNLYKLWNRMASGSYMPQAVRRVDIPK
                     ADGGVRPLGIPAVSDRIAQMVVKQILEPVLEPLFHADSYGYRPGKSAHQAIAQARKRC
                     WKFDWVVEVDIKGFFDDIDHDLLLKTVQHHTQARWVVMYIERRLKAPVQMPDGAMLAR
                     GRGTPQGGVISPL"
BASE COUNT          176 a          169 c          233 g          142 t
ORIGIN      
        1 tacagggacg gagtaaaccg tagtagcggt gaaggaccgt aatgggtccg gagcaaaggg
       61 cttgccccat tgtgctgatg gtgcggcggc aaccacgggc gacaatgccg atgggaggac
      121 tgctgtaaaa tcggcaaagc catttcctgt aagtaaacga caggtatggg aagcttataa
      181 acgagtaaaa gccaaccgtg gggcggcagg cattgacggg cagacactgg ccgggtttga
      241 cgagaatgtt acagacaatc tctacaaact gtggaacaga atggcttccg gcagttatat
      301 gccgcaggcg gtaaggcgtg tggacattcc caaagctgac ggtggtgtac gtccgctcgg
      361 tattccggcc gtgtcggacc ggatcgccca gatggtcgtt aagcagatac tcgagccggt
      421 actggaaccc ctgttccatg cagactcgta tggttatcga ccgggtaaat ccgcacacca
      481 ggcgattgcg caggcgagga aacgctgctg gaagtttgac tgggtggtgg aagtcgatat
      541 taaaggcttc tttgatgata tcgatcatga cctgctactg aagacagtgc agcatcatac
      601 tcaggcacgc tgggtggtga tgtacattga gcgcaggctg aaggcaccgg tgcaaatgcc
      661 ggatggagca atgctggcac ggggtcgagg aacgccgcag ggcggcgtaa tctcccccct
//
LOCUS       DAJVUN010000401          720 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.410, whole genome shotgun sequence.
ACCESSION   DAJVUN010000401 DAJVUN010000000
VERSION     DAJVUN010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.410"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            142..217
                     /locus_tag="OQQ76_004257"
     tRNA            142..217
                     /locus_tag="OQQ76_004257"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:175..177,aa:Ile,seq:cat)
BASE COUNT          206 a          143 c          167 g          204 t
ORIGIN      
        1 tgcgaatgga ggcaatgtcg ggttttatgt cgcatgtatt gacgacccag gatggatgag
       61 aacgcataaa aatctgctat ttacatcata agatcatcat gtttattgcg tggtttataa
      121 gtattgttat tgcatactta aggcccttta gctcagtggt tacagcaggc gactcataat
      181 cgcttggtcg ctggttcaag tccagcaggg gccaccaaat catcattcat gtatcaggaa
      241 gagttaaggg tcaaggggta ctcgatggcg gtctatattt catgactaac gccatttaaa
      301 ggaagaagtg cggtgggtgg tttcgaatga gggctggtgt tttggtacgt ggcacgccac
      361 tgcaatgtat ttatccatca gtactcattc aaaagtacct ggaaaaaatg cccgctatgc
      421 caagcgggca aattgcttac atgtggaatt aagtaattaa cgataaagcc agagtattat
      481 catttattat acccattcat ttaatcaggt taattactca aatcactgaa ctattctctg
      541 ttcgctcact gatgatgagt gagtaccaca accaatgtat gtagaacaat gccgtagagt
      601 aaggatgaaa tgtctctgcc acgccttaaa catctactac tgaccagaac acccgccgca
      661 ggcagatgag ttttgtgagc gttacaggag cgtggctatg ctcattaacc aacgctattg
//
LOCUS       DAJVUN010000402          711 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.411, whole genome shotgun sequence.
ACCESSION   DAJVUN010000402 DAJVUN010000000
VERSION     DAJVUN010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.411"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..422
                     /locus_tag="OQQ76_004258"
     CDS             <1..422
                     /locus_tag="OQQ76_004258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000065511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HCS1970488.1"
                     /translation="DYGVDIDALNAFKFLTGPETVLALLDERERNQQYIKRRDQENED
                     IALTVGKLRVELEAAKSKLNEQREYYEGVISDGCKRIAELEAREVQLPTRYDLRYGHP
                     INAYERQVMIPKENGSWLYLIDLEHALRVADIRIKGE"
     gene            424..>711
                     /locus_tag="OQQ76_004259"
     CDS             424..>711
                     /locus_tag="OQQ76_004259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001696189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970489.1"
                     /translation="MALTHHELCQIAYKFLKRNGFKVCFHDRFVAVTSTGEQPDAMGF
                     RNSASCLIEAKCSRADLLADRKKRFRKNPSLGMGDWRFFISEPEIISVEDLP"
BASE COUNT          204 a          154 c          183 g          170 t
ORIGIN      
        1 aagattacgg tgtggatatt gatgcgctca atgccttcaa atttctgacc ggaccagaaa
       61 ccgtgctggc actactggat gaacgggaaa gaaaccagca atacatcaaa cgccgcgacc
      121 aggagaacga ggatattgcg cttacggttg ggaagctgcg cgttgagctt gaagcagcaa
      181 aatcaaaact caacgagcag cgcgagtatt acgagggagt tatctctgat gggtgcaagc
      241 gtattgctga actggaagcg cgggaagttc aattaccgac tcgctacgac cttcgatatg
      301 gacacccgat aaatgcatat gagcgacaag tcatgatacc taaagaaaat ggcagttggc
      361 tttacctgat tgacctagaa cacgcattac gcgtcgctga cattcgcatc aaaggagagt
      421 gatatggcgt taacacacca cgaactctgt cagattgcgt acaagttcct taagcgcaac
      481 gggttcaagg tttgctttca tgaccgcttt gttgctgtaa ccagtaccgg agaacagcca
      541 gatgctatgg gattcagaaa ttcagcatca tgcctgatag aggcgaagtg ttctcgtgct
      601 gacttgttgg cagatagaaa aaagcgtttc cgtaaaaatc cctcacttgg catgggcgac
      661 tggcgattct ttattagtga gccggaaatt atttcagttg aggatttacc t
//
LOCUS       DAJVUN010000403          711 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.412, whole genome shotgun sequence.
ACCESSION   DAJVUN010000403 DAJVUN010000000
VERSION     DAJVUN010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.412"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..711
                     /locus_tag="OQQ76_004260"
                     /pseudo
     CDS             1..711
                     /locus_tag="OQQ76_004260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
BASE COUNT          182 a          182 c          190 g          157 t
ORIGIN      
        1 gctcgctacg accttcccga tgaggcatgg accatcatca agcctctgtt acctcctgaa
       61 cccgccacac cacgggccgg acgcccatgg gctgagcacc gtaaaatcat caatggcatg
      121 ttctgggtgt tatgttccgg tgcaccatgg cgcgatttac ccgaacgata tggggcatgg
      181 aaaactgttt ataaccgctt taaccgatga tcaaagtcag gcgtgattaa tattattttc
      241 aacaggttgc tttcgctact tgatgcaaat ggctttattg actggtctgc caccgcgctg
      301 gatggcagta atatccgggc gctgaaatgt gccgccggtg ctcaaaaaaa catcccgata
      361 tcgacggaga taatggcccg ggtcgctctc gcggcggttt tggcaccaaa atccatctgg
      421 caacagacgg aagtggcctc ccgttaaata tcgtgctaag ccccggacaa gctcatgaaa
      481 gccagttcgc gcaacgactt ctggacggga ttggcgttca gcgtcagaac ggcagcatga
      541 aacgccgtgg acatgcggta ctggctgata aagcgtattc agggcgcgca ttgcgcaacg
      601 agctgaaaaa taacggtata aaggcagtaa tcccccgaaa gtcaaatgag aaaatggcat
      661 cggatggacg tgcacagctt gatcgtgatg cgtactgcaa tcgtaatgtc g
//
LOCUS       DAJVUN010000404          695 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.413, whole genome shotgun sequence.
ACCESSION   DAJVUN010000404 DAJVUN010000000
VERSION     DAJVUN010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.413"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..672
                     /locus_tag="OQQ76_004261"
     rRNA            <1..672
                     /locus_tag="OQQ76_004261"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          176 a          165 c          206 g          148 t
ORIGIN      
        1 taagtcgacc gcctggggag tacggccgca aggttaaaac tcaaatgaat tgacgggggc
       61 ccgcacaagc ggtggagcat gtggtttaat tcgatgcaac gcgaagaacc ttacctggtc
      121 ttgacatcca cggaagtttt cagagatgag aatgtgcctt cgggaaccgt gagacaggtg
      181 ctgcatggct gtcgtcagct cgtgttgtga aatgttgggt taagtcccgc aacgagcgca
      241 acccttatcc tttgttgcca gcggtccggc cgggaactca aaggagactg ccagtgataa
      301 actggaggaa ggtggggatg acgtcaagtc atcatggccc ttacgaccag ggctacacac
      361 gtgctacaat ggcgcataca aagagaagcg acctcgcgag agcaagcgga cctcataaag
      421 tgcgtcgtag tccggattgg agtctgcaac tcgactccat gaagtcggaa tcgctagtaa
      481 tcgtggatca gaatgccacg gtgaatacgt tcccgggcct tgtacacacc gcccgtcaca
      541 ccatgggagt gggttgcaaa agaagtaggt agcttaacct tcgggagggc gcttaccact
      601 ttgtgattca tgactggggt gaagtcgtaa caaggtaacc gtaggggaac ctgcggttgg
      661 atcacctcct taccttaaag aagcgtactt tgcag
//
LOCUS       DAJVUN010000405          683 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.414, whole genome shotgun sequence.
ACCESSION   DAJVUN010000405 DAJVUN010000000
VERSION     DAJVUN010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.414"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(106..432)
                     /locus_tag="OQQ76_004262"
                     /pseudo
     CDS             complement(106..432)
                     /locus_tag="OQQ76_004262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518821.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          208 a          125 c          103 g          247 t
ORIGIN      
        1 atcgatgcat tttatagaat catcaatggc cataatagta ctattaactc tcaattttat
       61 atttttatca tcactacaaa tattaactga atttatatca atgatttttt tattcttatc
      121 ttttatttta tttactgttt caatgcaatc agcggcaagt tggagtggat ttagattttt
      181 cagatatggt cttatgatct ttcccttact taataaatag catgtatagg attcggaaag
      241 tccagcatct attttgtacc tcattatatt agataaggat gtgagaaatt ccttgttatc
      301 attcgcagcc atatatgcca gtccgagttc agcctctgcg gccttacagg caaaatagct
      361 tagtgaacac gcttttcgtc cctctttagt actggctgat attagtgccc ataatattgc
      421 tttgtctgcc aaatctaact ctctctgaaa ttttcttgca gtaactgcac tcgcagaaat
      481 agagaaaaaa atacaattgt taataacctt gccatatttt tttagtccgt aactgttaat
      541 gtgctatctg gctctgaaaa tattaactca tttaattttt gcatgtcatt agataaacca
      601 gttatacaac cctcggaaca gaatcgaggt cctaaagacg gaccaaaagt gtttaaacaa
      661 ctatgtattg aaaatccatt gcg
//
LOCUS       DAJVUN010000406          644 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.416, whole genome shotgun sequence.
ACCESSION   DAJVUN010000406 DAJVUN010000000
VERSION     DAJVUN010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.416"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            151..>644
                     /locus_tag="OQQ76_004263"
     CDS             151..>644
                     /locus_tag="OQQ76_004263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001382066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1970490.1"
                     /translation="MEDASLTTKGVVKLSSAVDSTSESLAATPKAVKAANDNANSRVP
                     SNRKVNGKALTADITLTPKDIGTLNSVTMSFSGGAGWFKLATVTMPQASSIVYIALIG
                     GAGYNVGSPHQAGISELVLRAGNGNPKGITGALWKRTAVGLTNFAWINTSGDTYDIYV
                     EIGN"
BASE COUNT          181 a          150 c          177 g          136 t
ORIGIN      
        1 gcagcgaaga gcagcgccac gacggcatcc acgaaggcaa cagaggcggc aggcagtgcg
       61 acggcagcat ctcagagcaa aactgaatcc gctgcgaccc gtgcggaagc tgctgctgat
      121 cgtgctgaag agattgccgg tgcagttgcg atggaagacg caagccttac aactaaaggt
      181 gttgtgaaac ttagcagtgc tgttgatagc accagtgaat cgctggccgc aacgccaaaa
      241 gcagttaaag cagccaatga caatgcgaat agcagggtgc catctaaccg aaaagttaac
      301 ggaaaagcat tgactgcgga tataacatta acgccgaaag atattggtac tttaaattca
      361 gtaacgatgt ctttctctgg cggggctggg tggttcaaac tggctacggt taccatgcca
      421 caagcgagtt ccatcgttta catcgcattg attggtggcg ctggttacaa cgtcggttcc
      481 ccacatcagg caggcatttc agaactggtt ctacgagcag gcaatggaaa ccccaaagga
      541 attaccgggg ctttgtggaa gcgtacagcc gtcggattaa cgaatttcgc ctggatcaac
      601 acatccggcg atacatatga tatttacgtt gagattggca atta
//
LOCUS       DAJVUN010000407          640 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.417, whole genome shotgun sequence.
ACCESSION   DAJVUN010000407 DAJVUN010000000
VERSION     DAJVUN010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.417"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            25..>640
                     /locus_tag="OQQ76_004264"
     CDS             25..>640
                     /locus_tag="OQQ76_004264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91-like element ISSbo1 family transposase"
                     /protein_id="HCS1970491.1"
                     /translation="MTRSGGDFQPRPLKRLFTANQCWTSFLDAGGLRDIGVEAVTKML
                     ACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDW
                     VHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLN
                     WHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQLLLKA"
BASE COUNT          140 a          171 c          198 g          131 t
ORIGIN      
        1 aaacagaagc ggagatgaag gcggatgacc cgaagtggtg gtgattttca gccccgcccg
       61 ctgaaacgcc tgttcacagc caaccagtgc tggacgtcct tcctggatgc gggcggtctg
      121 cgcgatatcg gggttgaggc tgtcacaaaa atgctggcct gcggcacgcg gatactggga
      181 gtgaaggaat acatctgcga taaacctgag tgcccccacg tcagatacgt cactaactca
      241 tgcggcagcc gtgcctgccc gtcctgcgga aaaaaggcca cagacctgtg gatagcgaca
      301 cagctgaatc gtcttcctga ctgcgactgg gtacacctgg tcttcaccct gccggacacg
      361 ctgtggccgg tgttcgaaag caaccggtgg ctgctgaatg acgtgtgccg tctggcggtg
      421 gagaatctgc tgtatgccgc ccggaaacgg gggcaggaac ccggtatctt ctgcgccatc
      481 cacacgtatg gccgtcgtct caactggcat ccgcatgtac atgtgtctgt aacctgtgga
      541 ggtctgaata agcatggtca gtggaaaaag ctgagcttcc tgaaagacgc gatgcgttca
      601 cggtggatgt ggaatatgcg gcagctgctt ctgaaagcgt
//
LOCUS       DAJVUN010000408          598 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.419, whole genome shotgun sequence.
ACCESSION   DAJVUN010000408 DAJVUN010000000
VERSION     DAJVUN010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.419"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(33..212)
                     /locus_tag="OQQ76_004265"
     CDS             complement(33..212)
                     /locus_tag="OQQ76_004265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001039895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970492.1"
                     /translation="MNKPQLAESQKTALLTEAESVIRPRGRAVRLNRETDESGEARGR
                     ASVFPESVRSVVYAM"
     gene            complement(212..>598)
                     /locus_tag="OQQ76_004266"
     CDS             complement(212..>598)
                     /locus_tag="OQQ76_004266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HCS1970493.1"
                     /translation="PFTVTPEMLEAAREARRQEIEAWRAEQEAKPFTFEWNGRIWNAG
                     PDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEI
                     YRRQREMKEELSGLDDLASIRAFDVE"
BASE COUNT          124 a          198 c          135 g          141 t
ORIGIN      
        1 ctgaaaacgg ctcacaactg caccattcat aatcacatcg cataaaccac agaccggact
       61 gactccggaa aaacagaggc ccgcccccgg gcctccccgg attcatccgt ttccctgttc
      121 agcctgacag cacgcccccg cggccggatg acagactccg cttcggtaag caaagcggtc
      181 ttctgtgatt ccgccagttg cggcttattc attactcaac gtcaaacgcc cgaattgaag
      241 ccaaatcatc cagaccgctc agctcctctt tcatttcacg ctgacggcga taaatctcat
      301 cgttgcgatc gacctgcgcc tgcaccattg ctgccgccag ttcttccagt tccggcatcg
      361 acagtttcac ctgctgatta tcggcatcgc tccacgccat atgtgtttgt gctgtgacag
      421 attttgccag catgactacc ggggacaggc ggcccagtga gtcgggacca gcattccaga
      481 tacgaccgtt ccattcaaac gtgaacggct tcgcctcctg ttctgcgcgc catgcttcaa
      541 tttcctgacg tctggcctct ctggccgctt ccagcatttc tggtgtcaca gtgaatgg
//
LOCUS       DAJVUN010000409          573 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.420, whole genome shotgun sequence.
ACCESSION   DAJVUN010000409 DAJVUN010000000
VERSION     DAJVUN010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.420"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            122..>573
                     /locus_tag="OQQ76_004267"
     CDS             122..>573
                     /locus_tag="OQQ76_004267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001061373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HCS1970494.1"
                     /translation="MNNLMVIDGIEVRRDVYGRYSLNDLHRAAVASGANARTKEPGKF
                     ISSQQTVELVHELTNTQNLGVDPVSMIHGGNERGTYVCKELVYAYAMWISPSFHLKVI
                     RTFDMVTSAPEKLSGQAADKMQAGVILLDFMRRELNLSNSSVLGACQKL"
BASE COUNT          155 a          115 c          166 g          137 t
ORIGIN      
        1 caggtgaaaa gaatgctggt ggagtgggga ccggttatcc cgaaagggaa ggtcgagatc
       61 actatcagta agtacgagaa aacggcgggt gcagccgcct gatcaagagg agaaacgaag
      121 tatgaataat ctgatggtca ttgatggtat tgaagttcgt cgtgatgttt atgggcgtta
      181 cagcctgaac gatctgcatc gcgcagcagt agcatctggt gcaaatgcca gaaccaagga
      241 gccgggaaag tttatttcca gccaacaaac tgttgagctt gttcatgaat tgaccaacac
      301 ccagaatttg ggtgttgacc cggtgagtat gattcatggg ggaaatgaac ggggaacgta
      361 tgtctgcaag gaactggtgt atgcctatgc aatgtggatc agcccgtcat tccatctgaa
      421 ggtgatccgt actttcgaca tggtaaccag cgcaccggaa aaattatccg gacaggctgc
      481 tgacaagatg caggctggtg tgattctgct ggactttatg cgccgggaat taaacctgtc
      541 taactcttca gtgcttggtg cctgtcagaa act
//
LOCUS       DAJVUN010000410          557 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.421, whole genome shotgun sequence.
ACCESSION   DAJVUN010000410 DAJVUN010000000
VERSION     DAJVUN010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.421"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>557
                     /locus_tag="OQQ76_004268"
     CDS             <1..>557
                     /locus_tag="OQQ76_004268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HCS1970495.1"
                     /translation="ATSVNIHWDCTANASVSVYTSPTYSASKPSSVTYGVVYTMYSSH
                     QKPTPSDIGALPTTGGTISGPLFVTDGITGALKGNADTATKLAAAPKINGVKFDGSAD
                     INLTPENIGAFARRSTGAYADSDGAVPWNAESGAYNVTRSGDSYILVNFYTGVGSCRT
                     LQMKAHYRNGGLFYRSSRDGYGFEE"
BASE COUNT          134 a          127 c          150 g          146 t
ORIGIN      
        1 tgcgacgagt gtaaatatcc attgggattg tactgcaaat gcgtcagttt ctgtttatac
       61 ctcgccaaca tattcagcga gtaagccttc cagcgttacc tatggtgttg tttatacgat
      121 gtatagctca catcagaaac ctacaccatc agatattgga gcgctgccaa cgactggagg
      181 gactatttca ggtccgttgt ttgttactga tgggatcacc ggggcactga aggggaacgc
      241 cgataccgcg acgaaacttg cggcagcccc aaaaattaac ggtgttaagt ttgatggctc
      301 ggcggatatt aacctcacgc cggaaaatat tggtgcattt gcccgacgtt cgacgggggc
      361 ttatgcggat tcggatggag ccgttccctg gaatgccgaa tcaggcgctt acaatgtcac
      421 ccgctctggc gacagctata ttctggttaa cttctatacc ggagtcggaa gttgccggac
      481 cctgcagatg aaggcgcatt acagaaatgg tggtctgttc taccgttctt caagagacgg
      541 ttatggtttt gaggaag
//
LOCUS       DAJVUN010000411          554 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.422, whole genome shotgun sequence.
ACCESSION   DAJVUN010000411 DAJVUN010000000
VERSION     DAJVUN010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.422"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>554
                     /locus_tag="OQQ76_004269"
     CDS             <1..>554
                     /locus_tag="OQQ76_004269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001435743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970496.1"
                     /translation="YPKLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIKSHTH
                     SASASSTDLGTKTTSSFDYGTKSTNKTGAHTHSLSGSTGSAGVHTHGNGIRWPGGGGS
                     ALAFYDGGGFTYVQNSQYQVSPGTSSRRSYYQRIQTQSAGAHTHSLSGTAASSGAHAH
                     TVGIGAHTHSVAIGSHGHTITVNAA"
BASE COUNT          128 a          146 c          147 g          133 t
ORIGIN      
        1 tacccgaaac ttgcagccgc ttatccgtca ggcgtgatcc ctgatatgcg tggctggacg
       61 attaagggca aacctgccag tggtcgggcc gtattgtctc aggaacagga cggcattaaa
      121 tcgcacaccc acagcgccag cgcatccagt acggatttgg ggacgaaaac cacatcgtcg
      181 tttgattacg gcactaaatc cacgaataaa accggggcgc atacgcacag tctgagtggc
      241 tctacggggt ctgccggtgt tcatactcat ggtaatggta ttcgttggcc aggaggcggc
      301 ggttctgcgt tagcatttta tgatggcggt gggttcactt atgtccagaa ttcacagtat
      361 caagtaagcc cggggacttc ttcccgtaga tcgtattatc aacgtattca gacacagtca
      421 gcaggtgctc atacccactc gctgtctggt actgcagcaa gttctggcgc acatgcacat
      481 actgtaggta ttggtgcgca tacgcactcc gttgcgattg gttcacatgg acacaccatc
      541 accgttaacg ctgc
//
LOCUS       DAJVUN010000412          551 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.423, whole genome shotgun sequence.
ACCESSION   DAJVUN010000412 DAJVUN010000000
VERSION     DAJVUN010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.423"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>551
                     /locus_tag="OQQ76_004270"
     CDS             <1..>551
                     /locus_tag="OQQ76_004270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HCS1970497.1"
                     /translation="VARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAART
                     LPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRL
                     EHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPG
                     TNAAAVVLPRLALQLITLRKQRD"
BASE COUNT          118 a          187 c          142 g          104 t
ORIGIN      
        1 cgttgcccgc tcagaaggag tccttgtcgg atacctccct ggactggcca tgcgccgcat
       61 agccgactta cacgccggtg aagctaaaac tgatgctcgt gacgctgcca tcattgccga
      121 agctgcccgt accctgcctc acgcgctacg cacgctgaaa ctggctgacg agcaaatcgc
      181 cgaactctcc atgctctgcg gcttcgatga tgatcttgcc gcacagacaa cgcaggccag
      241 caaccgtatc cgcggccttc tgacccagat acatccggca ctggagcgcg ttctcggtcc
      301 gagacttgag cacccggcgg tactcgatct tctccagcga tatccctcac cagaaaaact
      361 cgcttcgctg ggtgagaaga agctggcagc ccagctctgc aaacttgcgc ctcgtctggg
      421 taaacgcctt gcagcagaca tagctcaggc actggccgaa caaaccgtcg tcgttcccgg
      481 cacgaatgcc gctgccgtag tactgccacg tctggcactc cagctcatca cgctgcgtaa
      541 gcaaagagac g
//
LOCUS       DAJVUN010000413          544 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.424, whole genome shotgun sequence.
ACCESSION   DAJVUN010000413 DAJVUN010000000
VERSION     DAJVUN010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.424"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..299)
                     /locus_tag="OQQ76_004271"
     CDS             complement(<1..299)
                     /locus_tag="OQQ76_004271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970498.1"
                     /translation="MSLLNEVQKFIEAHPGCTSGDIADAFAGYSRQCVLQSASKLRQS
                     GRVAHRCEGDTRRHFPRLTERAQEAEPQPVRETRPVRNFYVGTNDPREILCLTRQA"
     gene            complement(296..>544)
                     /locus_tag="OQQ76_004272"
     CDS             complement(296..>544)
                     /locus_tag="OQQ76_004272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1970499.1"
                     /translation="EGVNPETMLEGVKRYAGWVSAMGNSGTQFVKQAVTFFGPDRHFE
                     ESWEVPAVSAARREDPYFKASYDNVDYSQIPAGFRGGL"
BASE COUNT          117 a          163 c          134 g          130 t
ORIGIN      
        1 gcctggcggg tcaggcacaa aatctcccgc gggtcgttag tgccgacata gaaattgcgc
       61 acaggtctgg tttcacgaac tggttgcggt tccgcctcct gcgctctctc agtcaggcgc
      121 gggaaatgtc tgcgtgtatc cccttcacaa cggtgagcca cacgaccact ctgacgtaat
      181 ttgcttgctg actgcagaac gcactgccgt gagtaacctg caaaagcatc cgcaatgtct
      241 ccggaagtac accccggatg ggcttcaatg aatttctgaa cttcattcaa aagactcata
      301 atccccccct gaatcctgcc gggatctggc tgtagtccac gttgtcgtaa ctggctttga
      361 agtacgggtc ctcgcgtctg gctgcagata ccgcaggaac ttcccaggat tcttcgaaat
      421 gacgatctgg accaaagaac gtgacagcct gtttcacaaa ttgtgtgccg ctattgccca
      481 tcgcagatac ccagcccgcg tagcgtttca caccttccag catggtttcg gggtttaccc
      541 cctc
//
LOCUS       DAJVUN010000414          544 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.425, whole genome shotgun sequence.
ACCESSION   DAJVUN010000414 DAJVUN010000000
VERSION     DAJVUN010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.425"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..299)
                     /locus_tag="OQQ76_004273"
     CDS             complement(<1..299)
                     /locus_tag="OQQ76_004273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970500.1"
                     /translation="MSLLNEVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLRQS
                     GRVAHRCEGDTRRHFPRQTKISPEAERQPVRETRPVRNFYVGTNDPREILCLTRQA"
     gene            complement(302..>544)
                     /locus_tag="OQQ76_004274"
     CDS             complement(302..>544)
                     /locus_tag="OQQ76_004274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970501.1"
                     /translation="EGVNPETMLEGVKRYAGWVSAMGNSGTQFVKQAVTFFGPDRHFE
                     ESWEVPAVSAARREDPYFKASYDNVDYSQIPAGFRG"
BASE COUNT          117 a          162 c          134 g          131 t
ORIGIN      
        1 gcctggcggg tcaggcataa aatctcccgc gggtcgttag tgccgacata gaaattgcgc
       61 acaggtctgg tttcacgaac tggttgccgt tccgcctccg gcgatatctt tgtctggcgc
      121 gggaaatgtc tgcgtgtatc cccttcacaa cggtgagcca cacgcccact ctgacgtaac
      181 ttgcttgctg actgcagaac gcgctgccgt gagtaacctg caaaagcatc cgcaatgtct
      241 ccggaagtac accccggatg ggcttcaatg aatttctgaa cttcattcaa aagactcatg
      301 atcaccccct gaatcctgcc gggatctggc tgtagtccac gttgtcgtaa ctggctttga
      361 agtacgggtc ctcacgtctg gctgcagata ccgcaggaac ttcccaggat tcttcgaaat
      421 gacgatccgg accaaagaac gtgacagcct gtttcacaaa ttgtgtgccg ctgttaccca
      481 tcgcagatac ccagcccgca tagcgtttca caccttccag catggtttcg gggtttaccc
      541 cctc
//
LOCUS       DAJVUN010000415          536 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.426, whole genome shotgun sequence.
ACCESSION   DAJVUN010000415 DAJVUN010000000
VERSION     DAJVUN010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.426"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..486
                     /locus_tag="OQQ76_004275"
     CDS             <1..486
                     /locus_tag="OQQ76_004275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HCS1970502.1"
                     /translation="YNIEGFGFVGAYSKSDRTNEQVGDGYGDNAEVWSLAAKYDANNI
                     YAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLYARDG
                     HKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVGIVYQ
                     F"
BASE COUNT          161 a          108 c          119 g          148 t
ORIGIN      
        1 tacaacatcg aaggttttgg ttttgtaggt gcatatagca aatctgatcg tactaatgaa
       61 caagttggtg acggctacgg tgataacgct gaagtgtggt cattagcagc caagtatgat
      121 gcaaataata tctatgcagc aatgatgtac ggtgaaaccc gcaacatgac cgttttggct
      181 aatgatcatt ttgcaaataa aacccaaaac tttgaagctg ttgtacagta tcagttcgac
      241 ttcggtttac gtccgtcttt aggctacgta tattccaaag gcaaagatct ttatgctcgt
      301 gatggacata aaggtgttga tgctgaccgc gtaaattata tcgaagttgg tacctggtac
      361 tacttcaata agaacatgaa cgtctacaca gcatacaaat ttaacctgct ggataaagac
      421 gatgcagcga ttaccgatgc cgcaactgat gaccagtttg cagttggtat cgtctaccag
      481 ttctaatcag ccaacgcgcc gcggcgtgtt actgtaaaac ataacactag cctgag
//
LOCUS       DAJVUN010000416          514 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.427, whole genome shotgun sequence.
ACCESSION   DAJVUN010000416 DAJVUN010000000
VERSION     DAJVUN010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.427"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..279
                     /locus_tag="OQQ76_004276"
     CDS             <1..279
                     /locus_tag="OQQ76_004276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
                     /protein_id="HCS1970503.1"
                     /translation="SLNVYCRNGQVEIDNNIGENALRSVAVGRKNYLFFGSDNGGESA
                     AIIYSLLVTCKLNGVEPEDWLREVIVKLNDWPSNRVHELLPWNFSAVK"
BASE COUNT          125 a          115 c          139 g          135 t
ORIGIN      
        1 agcctgaacg tgtactgtcg taatggccag gtggaaatcg acaacaacat cggtgaaaac
       61 gcgctgcgat cggtggcggt tggaagaaaa aattatctct tcttcggttc tgacaacggt
      121 ggagaaagcg cggcgattat ctacagtctg ctggtcacct gcaaactgaa cggagtggag
      181 ccggaggact ggttgcgcga agtgatcgtg aagctcaatg actggccgtc gaaccgagtg
      241 catgaactgc tgccctggaa cttctcagct gtaaaataat ccttccgcta cgtacttctc
      301 tgggcgctta ccactcaacg gcatcgtcaa aattatcaaa gcgcagaaca tagatttatc
      361 atgtgtttta tggatggctt tctccatcag gcatcgttcg tcacgggaaa ttggtgctat
      421 gatcggcatt gatcagtccg gttggtgatt tgttttgatt tggcgattga tcagatcgca
      481 caatccgggc tgagttccct ctaagtgatc tagg
//
LOCUS       DAJVUN010000417          508 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.428, whole genome shotgun sequence.
ACCESSION   DAJVUN010000417 DAJVUN010000000
VERSION     DAJVUN010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.428"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            51..>508
                     /locus_tag="OQQ76_004277"
     CDS             51..>508
                     /locus_tag="OQQ76_004277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISEc11 family transposase"
                     /protein_id="HCS1970504.1"
                     /translation="MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNR
                     EPCLIGMEACGGSQHWARELTKLGHKVRLLQARFVKAFVMGNKNDVMDARAIWMAVQQ
                     PGKEIAVKTEEQQSVLVLHRTRMQLVKFRTAQINALHGTLLEFGETIHKGR"
BASE COUNT          138 a          117 c          139 g          114 t
ORIGIN      
        1 agtgcccaat acgggatgca taaagctccc tcagactgga gactccacaa atgaaatata
       61 caccggttgg cgttgatatc gcaaaacatg tcattcagat tcacttcatc aatgagcaca
      121 caggtgaagt ggttgataaa cagttgcgta gacaggattt tctgacgttc ttcggcaacc
      181 gtgagccatg cctgattggt atggaggcct gtggaggttc tcagcactgg gcacgggaac
      241 tgacaaaact tggtcataaa gtccggttgt tgcaggcccg cttcgttaag gcattcgtca
      301 tgggcaataa gaatgatgtg atggatgccc gggctatctg gatggcggtt cagcagccgg
      361 gtaaagaaat cgccgtaaaa acagaagaac agcagtcggt actggttctg caccgtaccc
      421 gcatgcaact ggtgaagttc cggaccgcac aaattaatgc cctgcacggg acgttactgg
      481 agtttggtga aaccatccac aaaggccg
//
LOCUS       DAJVUN010000418          490 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.429, whole genome shotgun sequence.
ACCESSION   DAJVUN010000418 DAJVUN010000000
VERSION     DAJVUN010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 490)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.429"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>490
                     /locus_tag="OQQ76_004278"
     CDS             <1..>490
                     /locus_tag="OQQ76_004278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HCS1970505.1"
                     /translation="RAHYPVVTLCQVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLEL
                     HGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAI
                     PNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLT
                     MKA"
BASE COUNT          114 a          129 c          148 g           99 t
ORIGIN      
        1 cagagcgcat tatcctgtgg tcacactctg ccaagtgttc ggggttcatc gcagcagcta
       61 cagatactgg aaaaaccgtc ctgaaaaacc agacggcaga cgggctgtat tacgcagtca
      121 ggtacttgag ctacatggca tcagccatgg ttcggccgga gcaagaagca tcgccacaat
      181 ggcaacccgg agaggctacc agatgggacg ctggcttgct ggcaggctca tgaaagagct
      241 ggggctggtc agctgtcagc agccgactca ccggtataaa cgtggtggtc atgaacatgt
      301 tgctatccct aactaccttg aaaggcagtt cgccgtgacc gagccaaatc aggtgtggtg
      361 cggtgatgtg acctgtatct ggacgggtaa gcgctgggcg tacctcgccg ttgttctcga
      421 cctgttcgca agaaaaccag tgggctgggc catgtcgttc tcgccggaca gcaggctcac
      481 catgaaagcg
//
LOCUS       DAJVUN010000419          488 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.430, whole genome shotgun sequence.
ACCESSION   DAJVUN010000419 DAJVUN010000000
VERSION     DAJVUN010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.430"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..98)
                     /locus_tag="OQQ76_004279"
     CDS             complement(<1..98)
                     /locus_tag="OQQ76_004279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HCS1970506.1"
                     /translation="MVTKTITEQRAEVRIFAGNDPAHTATGSSGISS"
     gene            complement(135..>488)
                     /locus_tag="OQQ76_004280"
     CDS             complement(135..>488)
                     /locus_tag="OQQ76_004280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HCS1970507.1"
                     /translation="ATLAAMPEMTVEKARPILAASPQANAGPSLRDQIMALDEAKGAE
                     AQAEQLAACPGMTVESARAVLAAGSGKAEPVSASTTALFEHFMANHSPAAVQGGVSQA
                     SEDGDADVKMLMAMP"
BASE COUNT           92 a          153 c          128 g          115 t
ORIGIN      
        1 gaagaaatcc cgctgctgcc tgtggcggta tgagccggat cattaccagc aaaaatacgt
       61 acttccgcac gctgttcagt gatggttttc gtcaccatat tgttaaaacc tcgtattgat
      121 gttcagcact gacttcatgg catggccatg agcattttca cgtccgcatc accgtcttct
      181 gatgcctgtg acacgccccc ctggaccgca gccggtgaat ggttcgccat gaaatgttca
      241 aacagggcgg ttgtggatgc agagaccggt tctgccttac ctgatcccgc agccagcaca
      301 gcccgggcgc tctccacagt cattcccggg caggcagcca gctgttcagc ctgcgcctca
      361 gccccttttg cctcatccag tgccatgatc tgatcacgga gtgatggtcc ggcattcgcc
      421 tgcggtgaag cagccaggat cgggcgggct ttttccaccg tcatctccgg catcgccgcc
      481 agcgttgc
//
LOCUS       DAJVUN010000420          456 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.431, whole genome shotgun sequence.
ACCESSION   DAJVUN010000420 DAJVUN010000000
VERSION     DAJVUN010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.431"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>456
                     /locus_tag="OQQ76_004281"
     CDS             <1..>456
                     /locus_tag="OQQ76_004281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HCS1970508.1"
                     /translation="NFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFT
                     IGGHGTPTSIESATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTSKGQNSFASQLA
                     KELHTNVIGPDTLWTWWGRGTNGKLKMDTVLTAPTNLNSNKDLMAITTK"
BASE COUNT          156 a           78 c           95 g          127 t
ORIGIN      
        1 gaatttttat cagtatccgt tgaatccggt cataaatgta gatccgcaag gtttggttga
       61 tataaattta taccccgaaa gtgatcttat ccattctgta gctgatgaga ttaatatccc
      121 aggcgttttc acaatcgggg ggcatggtac ccccacatct attgaatccg caacgcgcag
      181 tatcatgaca gctaaagatc tagcatatct aattaaattt gatgggaatt ataaagatgg
      241 gatgacagtt tggttatttt cttgtaatac aagtaaagga caaaattcat ttgctagcca
      301 attagctaaa gagttacata caaatgtaat aggacctgac acgctatgga cgtggtgggg
      361 gcgaggaact aatggtaagt taaaaatgga tacagtgcta acagcaccaa cgaaccttaa
      421 ttcaaataag gatctaatgg ctataacaac aaaaga
//
LOCUS       DAJVUN010000421          454 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.432, whole genome shotgun sequence.
ACCESSION   DAJVUN010000421 DAJVUN010000000
VERSION     DAJVUN010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.432"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>454
                     /locus_tag="OQQ76_004282"
     CDS             <1..>454
                     /locus_tag="OQQ76_004282"
                     /inference="COORDINATES: protein motif:HMM:NF019996.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prophage tail fiber N-terminal domain-containing
                     protein"
                     /protein_id="HCS1970509.1"
                     /translation="RLTQSTRRLSEIGVIRVYEDSTDGSLNDFLGATNIDLRPESLKK
                     FEELAQQAQQSAGSAAGNARQTAQDVTAAATARDDAQRFAEKARQDATVTAENRKATA
                     EDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLS"
BASE COUNT          126 a          123 c          135 g           70 t
ORIGIN      
        1 ttcgcctgac acaaagcaca cggcgccttt cagaaatcgg tgtcatccgc gtttatgaag
       61 attcaacgga cggttcgctg aatgattttc tgggcgcaac taatattgac ctgcgtccgg
      121 aatccctgaa gaaattcgaa gagctggcgc aacaggcgca gcagagtgcc gggagcgcag
      181 ccggaaacgc acggcagacg gcgcaggatg tgacggcagc cgcaacggcc cgtgatgatg
      241 cacaacgttt tgcggagaaa gcccgacagg atgcaaccgt cacagctgag aacagaaagg
      301 ccactgcgga agatgtgaca agcacaggag caaatgcagc cgcagccgga cagagcgcac
      361 aggatgccgc aggttatgcc cgcgcagcag aacaggccaa aaatgacatt gatgctgcgc
      421 tgaccggcac tctgaaaatg gctaaccatc tgtc
//
LOCUS       DAJVUN010000422          452 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.433, whole genome shotgun sequence.
ACCESSION   DAJVUN010000422 DAJVUN010000000
VERSION     DAJVUN010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.433"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            109..>452
                     /locus_tag="OQQ76_004283"
     CDS             109..>452
                     /locus_tag="OQQ76_004283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970510.1"
                     /translation="MNNNNTLYVGLDVHKESITVAYAINSEPVELMGKIGTSPTDIQN
                     LCKRLRSKSSQVSIVYEAGPCGYGLYRRLVKSGFDCMVCAPSLIPKKPGERVKTDRRD
                     AIRLVRSLRAGDL"
BASE COUNT          113 a          105 c          117 g          117 t
ORIGIN      
        1 gagacagatg ctggccaacg tgggatattt aacgcgggtt aacatcgttg tcagagccgc
       61 atgggtgagc tgttgctaca ccccggtatt tccaccacgg aggccagcat gaacaacaat
      121 aacacattgt acgtcgggtt agatgttcac aaagaatcga ttactgtcgc ttatgctatc
      181 aattcagaac ctgttgaact gatgggtaaa attggcacat cacctactga tattcagaat
      241 ctttgtaaac gtctcaggtc aaagtcatcg caggtcagta tcgtttatga agcggggccc
      301 tgtggttatg gactttatcg tcggctggtg aaatccggtt ttgactgcat ggtctgcgcc
      361 ccctcactta tcccgaaaaa accgggggag cgggttaaaa ccgatcgccg tgatgccatc
      421 agacttgtgc gttcactgcg tgcaggagat ct
//
LOCUS       DAJVUN010000423          446 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.434, whole genome shotgun sequence.
ACCESSION   DAJVUN010000423 DAJVUN010000000
VERSION     DAJVUN010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.434"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>446
                     /locus_tag="OQQ76_004284"
     CDS             <1..>446
                     /locus_tag="OQQ76_004284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HCS1970511.1"
                     /translation="DERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLR
                     KELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLY
                     LAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHS"
BASE COUNT          117 a          120 c          126 g           83 t
ORIGIN      
        1 gatgagcggc taaaactgga gattaaggtg gcacatatcc gcactcgcga aacatatgga
       61 acccggcggc tccagacgga gctggcagag aatggcatca tcgttggtcg tgaccgactg
      121 gcacgtcttc gtaaggagct aaggctacgc tgtaagcaga aacgcaagtt cagagcgact
      181 acgaacccga accacaatct gccagttgcg ccaaatctgc tgaaccagac gttcgctcct
      241 acagcaccaa atcaggtctg ggtggcggac ctgacgtatg ttgccacaca ggagggatgg
      301 ttgtacctcg ctggcatcaa agatgtttat acgtgcgaaa ttgtcggcta cgccatggga
      361 gagcgcatga caaaagagct gacaggtaaa gccctgttta tggcgctcag gagccagcgc
      421 ccacctgccg ggctaatcca ccactc
//
LOCUS       DAJVUN010000424          444 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.435, whole genome shotgun sequence.
ACCESSION   DAJVUN010000424 DAJVUN010000000
VERSION     DAJVUN010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.435"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(43..>444)
                     /locus_tag="OQQ76_004285"
     CDS             complement(43..>444)
                     /locus_tag="OQQ76_004285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001575625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1970512.1"
                     /translation="VAEEKHQRRELEKSHYQLVSTYSELSRQYMELLSEYKNLRRYFG
                     VTVQVPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIINASSRPGDQVADFFMGSGSTVK
                     AALALGRRAIGVELETGRFEQTVREVQDLIV"
BASE COUNT           99 a          132 c           86 g          127 t
ORIGIN      
        1 gaataataat ggtgcgtaat taattctgca atctcatccg tttcaaacga ttaaatcctg
       61 aacttccctg actgtctgct caaaacgtcc ggtctccagt tcaacgccaa tcgcacgacg
      121 cccgagcgcc agtgccgctt ttaccgttga acctgagccc ataaaaaaat ctgcaacctg
      181 gtctcccgga cgactgctcg cgttgattat ctgctgcaac atttctgccg gtttttcgca
      241 cggatgtttc cctggatagt actgcaccgg tttatacgtc cacacatcgg tgtacggcac
      301 ctgcaccgtc acaccgaaat acctccgcaa atttttatat tcactcagca gttccatata
      361 ctgccggctc agctcactgt atgtgctgac cagttggtaa tgggactttt ccagttctct
      421 ccgctgatgt ttctcttctg ccac
//
LOCUS       DAJVUN010000425          429 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.437, whole genome shotgun sequence.
ACCESSION   DAJVUN010000425 DAJVUN010000000
VERSION     DAJVUN010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.437"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(34..>429)
                     /locus_tag="OQQ76_004286"
     CDS             complement(34..>429)
                     /locus_tag="OQQ76_004286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HCS1970513.1"
                     /translation="HRRGELEKLHHQLVDTYTSLNRQYAELLSEYKHLRRYFGVTVQV
                     PYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLIADFFMGSGSTVKAALAL
                     GRRAIGVELETERFEQTVREVQDLVSQNG"
BASE COUNT           99 a          133 c           91 g          106 t
ORIGIN      
        1 gcataataac gactcgtaat taattcttca atatcatccg ttctggctga ctaaatcctg
       61 tacttcccga accgtctgct caaaacgttc agtctccagc tcaacgccaa ttgcacgacg
      121 cccgagcgcc agtgccgctt tcactgtcga acccgacccc atgaaaaaat ctgcaatcag
      181 gtcacccgga cgactgctag cgctgattat ctgctgcagc atttctgccg gtttttcgca
      241 cggatgtttc ccgggataga actgcaccgg tttatgcgtc cacacatcgg tatacggcac
      301 ctgcaccgtc acgccaaaat accgccgcag atgtttatat tcactcagca gctccgcata
      361 ctgccggttc agtgaggtat acgtatccac cagctggtgg tggagctttt ccagttcacc
      421 acgccgatg
//
LOCUS       DAJVUN010000426          418 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.438, whole genome shotgun sequence.
ACCESSION   DAJVUN010000426 DAJVUN010000000
VERSION     DAJVUN010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.438"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(71..130)
                     /gene="ypfM"
                     /locus_tag="OQQ76_004287"
     CDS             complement(71..130)
                     /gene="ypfM"
                     /locus_tag="OQQ76_004287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YpfM"
                     /protein_id="HCS1970514.1"
                     /translation="MIERELGNWKDFIEVMLRK"
BASE COUNT          125 a           78 c           69 g          146 t
ORIGIN      
        1 tcgccttttt caactttccg attaagaacc tgctcagcgg gttcttgctg tttgtacttt
       61 gtctcaggaa ttacttacga agcataactt cgataaagtc tttccagttc cccagttcac
      121 gttcaatcat aacaacctct cttataatta tgggtattct acggaaacaa tataccgtgg
      181 tgaagctaat ttactcgatt gctgcgatga ctacctccgg gggacaaacc ttatgtaaat
      241 actatggtcc tgcggtgata atttgtatgt gatacacagc aacatttcga gatattcata
      301 cggcatctaa tactgattta attctggtta aaatacagac agataacaag atgaatattc
      361 ttaatgttta cgttaaaaat gtttaatatt atttaatagt tgttaatttg aatacttc
//
LOCUS       DAJVUN010000427          412 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.439, whole genome shotgun sequence.
ACCESSION   DAJVUN010000427 DAJVUN010000000
VERSION     DAJVUN010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.439"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..309
                     /locus_tag="OQQ76_004288"
     CDS             <1..309
                     /locus_tag="OQQ76_004288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970515.1"
                     /translation="MLMAEEDDKVCELIFKQQDNLILKINDRFPRIIIKKYRTLQGKV
                     VWLWILPFVIEWLILCALGVNGWRGKSKYPDYYLLRDEMPVRLVSIIFPTLLALFLLA
                     "
BASE COUNT          130 a           58 c           83 g          141 t
ORIGIN      
        1 atgttgatgg cggaagaaga tgataaagta tgtgaactta tttttaaaca acaagataat
       61 ttgattttaa aaataaatga tagatttccc agaataatta taaagaaata ccgaacatta
      121 caaggtaaag tcgtatggct atggatattg ccatttgtta ttgaatggtt aatcttgtgt
      181 gctttaggcg taaacggctg gcgaggcaaa agtaaatacc ctgattatta tttgttaaga
      241 gatgagatgc ctgtgcgtct ggtgtctatt atattcccaa cattattggc gctattcttg
      301 ctggcgtagg catcgccata ctatgaatat tgtgtttgtc gtgattcaat ttttatttat
      361 aacctctacc cggagcaaat tcaggtaggt catgcataaa aatatctttc ta
//
LOCUS       DAJVUN010000428          409 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.440, whole genome shotgun sequence.
ACCESSION   DAJVUN010000428 DAJVUN010000000
VERSION     DAJVUN010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.440"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>409
                     /locus_tag="OQQ76_004289"
     CDS             <1..>409
                     /locus_tag="OQQ76_004289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HCS1970516.1"
                     /translation="VSLSIDILYFITSSWKSVLFWILTALILLNMVRMHFRLYQNVSR
                     ENISDAMTGLYNHKILTPELEQRLQKLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDL
                     AITLLAQAIKQSIRKSDYAIRLGGDEFCIILVDS"
BASE COUNT          108 a           77 c           94 g          130 t
ORIGIN      
        1 gtgtctcgtt atccattgat attctttact ttatcacgtc ttcgtggaaa agcgttctgt
       61 tctggatttt gacggcgtta attttgctga atatggtccg gatgcacttc cgtttatacc
      121 aaaatgtgtc gcgagaaaat attagtgatg cgatgactgg actgtataat cacaaaattt
      181 taacccctga actggagcag cggttgcaga aactggtgca atccggttct tcggtgatgt
      241 ttattgcaat tgacatggac aagttaaagc aaataaatga caccctcggt catcaggagg
      301 gggatttagc gattacgtta ttagctcagg cgattaaaca atcgattcgt aaaagtgatt
      361 atgccatccg actcggtggc gatgaattct gcatcattct tgtcgattc
//
LOCUS       DAJVUN010000429          407 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.441, whole genome shotgun sequence.
ACCESSION   DAJVUN010000429 DAJVUN010000000
VERSION     DAJVUN010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.441"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..119
                     /locus_tag="OQQ76_004290"
     CDS             <1..119
                     /locus_tag="OQQ76_004290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001087306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCS1970517.1"
                     /translation="AKAESPLAVSLYDYINDASALACLINLSLNPSEVRGRK"
     gene            116..340
                     /locus_tag="OQQ76_004291"
     CDS             116..340
                     /locus_tag="OQQ76_004291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001401086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970518.1"
                     /translation="MIRNIFKRFTNQTFRCPRPGQWYTTPAGHVLRVSLVDRECQKVI
                     CEPLGRNYRISMPLIAFRSGKNMKHLGGAA"
     gene            337..>407
                     /locus_tag="OQQ76_004292"
     CDS             337..>407
                     /locus_tag="OQQ76_004292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HCS1970519.1"
                     /translation="MSMELMVKAMKIRVGNPLRKLVL"
BASE COUNT           99 a           90 c          108 g          110 t
ORIGIN      
        1 tggcaaaagc cgaatctccg ctggctgtta gcttgtatga ctatattaat gatgcttcgg
       61 cactggcctg cctcataaat ttgtcgctga acccttcaga ggtaaggggg cgcaaatgat
      121 ccggaatatt ttcaaacggt ttaccaatca gactttccgt tgtcctcgtc cgggtcagtg
      181 gtacaccacg cctgcagggc atgttctacg tgttagcctg gttgaccgtg aatgtcagaa
      241 ggtgatttgt gaaccgctgg gccgtaatta ccgcatcagt atgccgctta tagcctttcg
      301 ctccggaaaa aacatgaagc atctcggagg tgctgcatga gtatggagct gatggttaaa
      361 gcgatgaaaa ttcgagtggg aaatccattg cgaaaactgg ttctgat
//
LOCUS       DAJVUN010000430          403 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.442, whole genome shotgun sequence.
ACCESSION   DAJVUN010000430 DAJVUN010000000
VERSION     DAJVUN010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.442"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..347)
                     /locus_tag="OQQ76_004293"
     CDS             complement(<1..347)
                     /locus_tag="OQQ76_004293"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001378271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage N-6-adenine-methyltransferase"
                     /protein_id="HCS1970520.1"
                     /translation="MSNKYCQELVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPF
                     VLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGADFGNPPYSRASQHEGQYITG
                     MRYIMKHASAMRD"
BASE COUNT           89 a          120 c           92 g          102 t
ORIGIN      
        1 ttatcacgca tggcactggc atgcttcatg atgtaacgca tgccggtgat gtattgcccc
       61 tcatgctgac tggcgcggct gtatggggga tttccaaagt cagcaccttt aagctccgca
      121 aggcgttctg accagtcatg cgccagcgcg ttgtcttccg ccgtgtaata cgcagcacat
      181 ttggcgttat caccgtcagt gaacagatcc agaacaaacg gaccaaacag ggtgttaatt
      241 ccccagaaaa tgttgtccgg cgtgcgccac tgatcgccca cttccttcag ttcatgggct
      301 ggtttgttcc gcagttccac cagctcctgg caatatttat tactcattaa gcccccacgt
      361 aattccctga cagataccac tcatcacccg atacagcgcg ctt
//
LOCUS       DAJVUN010000431          387 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.443, whole genome shotgun sequence.
ACCESSION   DAJVUN010000431 DAJVUN010000000
VERSION     DAJVUN010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.443"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>387
                     /locus_tag="OQQ76_004294"
     CDS             <1..>387
                     /locus_tag="OQQ76_004294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HCS1970521.1"
                     /translation="YVLTDGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTL
                     APAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKI
                     HDVHVRTPSALTEEALKRIGELYAIEA"
BASE COUNT           83 a          112 c          123 g           69 t
ORIGIN      
        1 tatgtgctga ctgacggtaa gctccatgct gatgacacgc ctgtcccggt gctgttgcca
       61 ggcaataaga aaacgaagac cgggcggtta tggacctacg ttcgtgacga ccgtaacgcc
      121 gggtcaacgc tggcgccggc ggtgtggttc gcttacagcc cggacagaaa aggcatccat
      181 ccgcagaccc atcttgcggg gttcagtggt gtactgcagg cggatgcata cgccgggttc
      241 aacgagctgt accgggatgg ccggataacg gaagccgcct gttgggctca cgcccgccgt
      301 aaaatccacg atgtgcacgt tcgcaccccg tcagccctga cggaggaagc gctgaaacgg
      361 atcggcgaac tgtacgccat cgaggca
//
LOCUS       DAJVUN010000432          382 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.444, whole genome shotgun sequence.
ACCESSION   DAJVUN010000432 DAJVUN010000000
VERSION     DAJVUN010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.444"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            184..339
                     /locus_tag="OQQ76_004295"
                     /pseudo
     CDS             184..339
                     /locus_tag="OQQ76_004295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343613.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
BASE COUNT          119 a           83 c           98 g           82 t
ORIGIN      
        1 gagagcagaa cgggatctat acttttgcgg gtcaacataa gaggatgagt ccttaataaa
       61 acaggtcctc agagaataca tattctgcgg agcgtgcggc aacaacagga cgaacagggg
      121 cggttttcaa tttgcagccg tcaggctgcc gtggttcact ccaacaacgg agacaggtaa
      181 attatggacg aaaagaagct taaagccctt gcggctgaac tggctaaagg cctcaaaacc
      241 gaggccgacc tcaatcagtt ttcccgtatg cagacgaaat taactgtcga aacggtgctt
      301 aatgcggaac taactgacca tctcgggcat gaaaaaagct acatccggta gtaaacatta
      361 tcagtgggtt atgcgatatg at
//
LOCUS       DAJVUN010000433          381 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.445, whole genome shotgun sequence.
ACCESSION   DAJVUN010000433 DAJVUN010000000
VERSION     DAJVUN010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.445"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            83..352
                     /locus_tag="OQQ76_004296"
     CDS             83..352
                     /locus_tag="OQQ76_004296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HCS1970522.1"
                     /translation="MSEIKSLVTAEAVKEVLRSEEVRSALKQQLRQNLEARLDAEVDS
                     ILDELLGAPTVPEPEGIADDSAVSDGVGSQPDGSEGPQPDGEMMM"
BASE COUNT          100 a           91 c          113 g           77 t
ORIGIN      
        1 agtcagtcag ccggagcaaa aacagaagcc ccactcattc cggaacaacc ttcttaataa
       61 cccatttcaa cgagaaaatc ctatgtcaga aataaaatcg ctggtcactg ctgaggcagt
      121 gaaggaagtc ctgcgctctg aagaagtccg gagcgcactg aaacagcaac ttcggcagaa
      181 ccttgaggcg cgtcttgatg cagaagtgga ttcaattctg gatgaactgc tgggcgcacc
      241 gactgttccg gagccggaag gcattgcgga tgacagtgct gtttcagatg gcgtcgggtc
      301 tcagcctgac ggtagtgaag ggcctcagcc tgacggcgaa atgatgatgt aaccatgcgc
      361 agggggtgtc ggtgtgagct g
//
LOCUS       DAJVUN010000434          380 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.446, whole genome shotgun sequence.
ACCESSION   DAJVUN010000434 DAJVUN010000000
VERSION     DAJVUN010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.446"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>380
                     /locus_tag="OQQ76_004297"
     CDS             <1..>380
                     /locus_tag="OQQ76_004297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970523.1"
                     /translation="PRRSFSNEFKLQMVKLASQPGASVARIAREHDINDNLLFKWLRL
                     WQNEGRISRRLPVTTSSDTGVELLPVEITPDEPKEPVAALTPSLSTQTTVSASSCKVE
                     FRHGNMTLENPSPELLTVLIRELT"
BASE COUNT           96 a          101 c           89 g           94 t
ORIGIN      
        1 aaccccgcag atcattttca aatgagttta aacttcaaat ggttaaactg gcttcacaac
       61 caggagcctc tgttgcccgt attgcccggg aacacgatat caatgataac ctgctgttca
      121 aatggctcag gctctggcag aacgaagggc gcatatcgcg gcgtcttccg gtaacaacct
      181 cttctgacac tggcgttgaa ttattacctg tggagataac gccggatgag ccgaaagaac
      241 cggtggctgc tcttactccg tctttatcta ctcagactac agttagtgcc agctcctgca
      301 aggtggagtt ccgtcacggt aacatgacgc tggaaaatcc ttcaccagag ctgctcacag
      361 tgttgatccg tgaactgacc
//
LOCUS       DAJVUN010000435          374 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.447, whole genome shotgun sequence.
ACCESSION   DAJVUN010000435 DAJVUN010000000
VERSION     DAJVUN010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.447"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..374
                     /locus_tag="OQQ76_004298"
                     /pseudo
     CDS             1..374
                     /locus_tag="OQQ76_004298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT           86 a          104 c           98 g           86 t
ORIGIN      
        1 ggcttctgtt tctatcagct gtccctcctg ttcagctact gacggggtgg tgcgtaacgg
       61 caaaagcact gccggacatc agcgctatct ctgctctcac tgccgtaaaa catggcaact
      121 gcagttcact tacaccgctt ctcaacccgg tacgcaccag aaaattattg atatggccat
      181 gaatggcgtt ggatgccggg caactgcacg cattatgggc gttagcctca acacgatttt
      241 acgtcactta aaaaactcag gccgcagtcg gtaacctcgc gcatacagcc gggcagtgac
      301 gtcatcgtct gcgcggaaat ggacgaacag tggggatacg tcggggctaa atcgcgccag
      361 cgctggctgt ttta
//
LOCUS       DAJVUN010000436          364 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.448, whole genome shotgun sequence.
ACCESSION   DAJVUN010000436 DAJVUN010000000
VERSION     DAJVUN010000436.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.448"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            84..>364
                     /locus_tag="OQQ76_004299"
     CDS             84..>364
                     /locus_tag="OQQ76_004299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HCS1970524.1"
                     /translation="MEYRTWITEALRLHFEEHLPRVVAGRRLGVPKSTVCGMFVRFRN
                     AGLSWPLPAGMSEQELDALLYGSASTVPVVLTESTVMPKLPVVKKRPRRP"
BASE COUNT           81 a          104 c           85 g           94 t
ORIGIN      
        1 taaccggctc atttaaaccg tctggtctgt ttcctccggc tccacaaaaa taatgtccat
       61 cattttgaag tggacactat cgtatggaat accggacctg gatcactgaa gctttacgcc
      121 ttcatttcga agaacattta ccacgggttg tggccggacg tcgcctgggc gtaccaaaat
      181 caactgtctg tggtatgttc gtgcgcttcc gcaacgctgg cctttcatgg cctctgcccg
      241 caggtatgtc ggagcaggaa cttgatgccc ttctttacgg aagtgcctcc acagtacctg
      301 tcgtacttac tgaaagcacc gttatgccca aactcccggt ggtaaaaaaa cgtccccggc
      361 ggcc
//
LOCUS       DAJVUN010000437          362 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.449, whole genome shotgun sequence.
ACCESSION   DAJVUN010000437 DAJVUN010000000
VERSION     DAJVUN010000437.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.449"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            237..341
                     /locus_tag="OQQ76_004300"
                     /pseudo
     CDS             237..341
                     /locus_tag="OQQ76_004300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013315785.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
BASE COUNT           98 a          104 c           90 g           70 t
ORIGIN      
        1 catccccgcc agcccggcta agatggaggc acggcacagc ccgcacacga cgctgaggct
       61 acagagctga aaacccacaa ggccatgccc cgcatggccg ggtaaagcgg agccggcggc
      121 gacttccttt gtgctctgtc cgggaccggc aggaaaaagg cggggataat gagatggtca
      181 cccccaccct aacagcagta cgctgttaag gtgaatccct taacggagag accatcatac
      241 agaacatcac acttattggt atcgatctcg gaaagcattc cttccacatt cattgtcaag
      301 acaagtctgg taaggctctt ctgcgtaaaa aatttaccca gtactaaact gatgcagttt
      361 ct
//
LOCUS       DAJVUN010000438          355 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.450, whole genome shotgun sequence.
ACCESSION   DAJVUN010000438 DAJVUN010000000
VERSION     DAJVUN010000438.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.450"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            96..>355
                     /locus_tag="OQQ76_004301"
     CDS             96..>355
                     /locus_tag="OQQ76_004301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970525.1"
                     /translation="MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNI
                     INSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKISLSPDTT"
BASE COUNT          134 a           63 c           40 g          118 t
ORIGIN      
        1 aagtaggaca tctgtttgca attactttca caacaattaa acatttttat gttttcgtat
       61 acatcatatt actctaccat tagagaaact ttattatgtt ttctataaaa ccaggaccca
      121 gaaatttacc tatcgacaac cccacattgt tatcatggaa cattactgac ggggatctaa
      181 attccaaatt aaatacatta gaatatctaa actgtataac aaatattatt aattcttgtg
      241 gagtttaccc tcaaggatta aaagacagag aaattatatc aacttttcac gcagaaaaag
      301 ttattaatga tctgttaaaa aacgattata aaatttccct ttctccagat acaac
//
LOCUS       DAJVUN010000439          352 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.451, whole genome shotgun sequence.
ACCESSION   DAJVUN010000439 DAJVUN010000000
VERSION     DAJVUN010000439.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.451"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
BASE COUNT           82 a           97 c           90 g           83 t
ORIGIN      
        1 agtaggtata tgggataatc gcggattcag gtgctggtac tgaattcacc gggaggcacc
       61 cggcaccatg caatggcaca tagcgccact ctccagcccc tctccggagg ggctttcttg
      121 tgggcaaaaa aagcccgcgc tgggagacgc gggcggcaag gaataaacaa caaaacgtga
      181 agtaatattt cagctggcga ataatacccc atagtaatca ctctgcgcaa ctgcgcggtc
      241 tttttcgaat tgcgggctgt cgtctctctt ctgccattgt cctgtaactt ccggacttca
      301 gcccgctcct cattttactc acaatattat cccggccggg aggattcatg gc
//
LOCUS       DAJVUN010000440          347 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.453, whole genome shotgun sequence.
ACCESSION   DAJVUN010000440 DAJVUN010000000
VERSION     DAJVUN010000440.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.453"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..215)
                     /locus_tag="OQQ76_004302"
     CDS             complement(<1..215)
                     /locus_tag="OQQ76_004302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970526.1"
                     /translation="MLMSLAQCLGFLFAHREECTVEIKKTINPRYTESGAVDCDVFFD
                     DRDQAVPYTATADDVAPTGQQIWQELQ"
     gene            complement(166..>347)
                     /locus_tag="OQQ76_004303"
     CDS             complement(166..>347)
                     /locus_tag="OQQ76_004303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HCS1970527.1"
                     /translation="LGPVGISVPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPD
                     AHVSGAMPGLFIRTS"
BASE COUNT           83 a           91 c           90 g           83 t
ORIGIN      
        1 ctttgcagtt cctgccagat ttgctgaccc gtcggtgcga catcatcagc ggtggctgtg
       61 tagggaactg cctggtccct gtcgtcaaaa aaaacgtcac agtctactgc gccactttcg
      121 gtataacggg gattaatggt ttttttaatt tccacggtgc attcctcacg atgtgcgaat
      181 aaaaagccca ggcattgcgc cagagacatg agcatccggc accccggaca gggcgcaata
      241 tgaccccggt aatgaatgct ctgaacatcc cgtaatgaaa aattgtgggg atgctatata
      301 cgttccggtg ggagtactgg gcactgaaat ccccaccggt cccagtc
//
LOCUS       DAJVUN010000441          346 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.454, whole genome shotgun sequence.
ACCESSION   DAJVUN010000441 DAJVUN010000000
VERSION     DAJVUN010000441.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.454"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..301
                     /locus_tag="OQQ76_004304"
                     /pseudo
     CDS             1..301
                     /locus_tag="OQQ76_004304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309807.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
BASE COUNT           85 a           78 c           99 g           84 t
ORIGIN      
        1 tgtaaaaata tccagttgtg agttaatcaa cgccgactgc ctggaattta tccggtcgtt
       61 acccgaaaat tctgttgacc tgatagtcac ggacccgccg tactttaaag tgaagcctga
      121 gggctgggat aaccagtgga agggcgacga tgattacctg aagtggctgg agcagtgtct
      181 ggcgcagttc tggcgggtgc tgaaacctgc cggaagtctt tacctgttct gtggtcatcg
      241 cctggcatct gatatcgaaa tcatgatgcg tgaacgcttc agtgtgctga accatattat
      301 ctgagcgaag ccgtccggac gctggaacgg atgcaacaag gaaagc
//
LOCUS       DAJVUN010000442          345 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.455, whole genome shotgun sequence.
ACCESSION   DAJVUN010000442 DAJVUN010000000
VERSION     DAJVUN010000442.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.455"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>345
                     /locus_tag="OQQ76_004305"
     CDS             <1..>345
                     /locus_tag="OQQ76_004305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HCS1970528.1"
                     /translation="NARIDDDIKNQADEVLKLMNISQTQAIAAFYQYITEQKKLPFVI
                     TSIVKTPHDLLRESTDMLAEALAVISNLQVWTEQQDGIGKAKLMEYYRRLDALYCCAK
                     EKIGLLSDNRDAE"
BASE COUNT          115 a           63 c           78 g           89 t
ORIGIN      
        1 aacgcacgta ttgatgatga tataaagaac caagcagatg aagtgctgaa gctgatgaat
       61 atcagtcaaa ctcaggctat tgcagctttt tatcagtata ttactgaaca aaagaaactg
      121 ccatttgtga tcacctcaat tgtaaaaacg ccgcatgatt tattacgtga aagtacagac
      181 atgttagctg aagctcttgc agtgatttcc aatctacagg tgtggactga acagcaggat
      241 gggattggaa aagcaaagct aatggagtat taccgccgcc tcgacgcact gtactgttgt
      301 gcaaaagaga aaataggtct tctttcagat aaccgggatg ctgaa
//
LOCUS       DAJVUN010000443          341 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.456, whole genome shotgun sequence.
ACCESSION   DAJVUN010000443 DAJVUN010000000
VERSION     DAJVUN010000443.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.456"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>341
                     /locus_tag="OQQ76_004306"
     CDS             <1..>341
                     /locus_tag="OQQ76_004306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HCS1970529.1"
                     /translation="NDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPES
                     NGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQ
                     RACNGLSDNRCL"
BASE COUNT           92 a           77 c          102 g           70 t
ORIGIN      
        1 aacgatcttc cgtcgtctcc agtggagtgg ctgacggata atggttcatg ctaccgggct
       61 aatgaaacac gccagttcgc ccggatgttg ggacttgaac cgaagaacac ggcggtgcgg
      121 agtccggaga gtaacggaat agcagagagc ttcgtgaaaa cgataaagcg tgactacatc
      181 agtatcatgc ccaaaccaga cgggttaacg gcagcaaaga accttgcaga ggcgttcgag
      241 cattataacg aatggcatcc gcatagtgcg ctgggttatc gctcgccacg ggaatatctg
      301 cggcagcggg cttgtaatgg gttaagtgat aacagatgtc t
//
LOCUS       DAJVUN010000444          331 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.457, whole genome shotgun sequence.
ACCESSION   DAJVUN010000444 DAJVUN010000000
VERSION     DAJVUN010000444.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.457"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            13..180
                     /locus_tag="OQQ76_004307"
     CDS             13..180
                     /locus_tag="OQQ76_004307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001379658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HCS1970530.1"
                     /translation="MPTGAFFAGAIAVFDKTWKGPAISYIGRDELEACGEAFLAQVRQ
                     QAEKLVREMVA"
     gene            177..>331
                     /locus_tag="OQQ76_004308"
     CDS             177..>331
                     /locus_tag="OQQ76_004308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000767134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease"
                     /protein_id="HCS1970531.1"
                     /translation="MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAI
                     VEQLRRLP"
BASE COUNT           77 a           80 c          108 g           66 t
ORIGIN      
        1 gacgaaaagc aggtgccaac aggtgctttc ttcgctggtg ctattgctgt tttcgacaag
       61 acctggaagg gaccggcaat cagctacatc gggcgcgatg aacttgaggc atgtggtgag
      121 gcatttctgg cgcaggttcg ccagcaggcg gaaaaactgg tcagggagat ggtggcatga
      181 agctaatact gccttttccg cccagcgtga acacgtactg gcgacacccc aacaaagggg
      241 cgtttgctgg taagagcctg ataagcgcgg cggggcgaaa attccagagc gcggcgtgcg
      301 cagcaatagt tgagcagtta cgtcgtctgc c
//
LOCUS       DAJVUN010000445          325 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.458, whole genome shotgun sequence.
ACCESSION   DAJVUN010000445 DAJVUN010000000
VERSION     DAJVUN010000445.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.458"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>325
                     /locus_tag="OQQ76_004309"
     CDS             <1..>325
                     /locus_tag="OQQ76_004309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HCS1970532.1"
                     /translation="KQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHL
                     KGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPR
                     VVKERP"
BASE COUNT           94 a           59 c          103 g           69 t
ORIGIN      
        1 aaacagacga tgcaactgag caggctgacg ctgagaagta aaaagccgga gcttgtggag
       61 caagagctgt ggggtgtctt actggcttat aatctggtga gatatcagat gattaaaatg
      121 gcggaacatc tgaaaggtta ctggccgaat caactgagtt tctcagaatc atgcggaatg
      181 gtgatgagaa tgctgatgac attgcagggc gcttcaccgg gacgtatacc ggagctgatg
      241 cgcgatcttg caagtatggg acaacttgtg aaattaccga cgagaagggg aagggccttc
      301 ccgagagtgg taaaggagag gccct
//
LOCUS       DAJVUN010000446          325 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.459, whole genome shotgun sequence.
ACCESSION   DAJVUN010000446 DAJVUN010000000
VERSION     DAJVUN010000446.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.459"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
BASE COUNT          101 a           74 c           76 g           74 t
ORIGIN      
        1 gtcatggaaa acctcaaata ccagtagatt accagaaact tctatcgatt gaagacatta
       61 ccttttgccg caataggtgg ggtaacattg gtgaaaacgc attacgccgg gtggcagttg
      121 gtaagcgtac agcctgaacc gtctggtcag aatctgacga attagacaaa gtggtgtcca
      181 ccaaataagt agtgggaacc aaagtgtcag atatgcagaa aaatgtgaat cccggcaggc
      241 gaaaaggctg ccctaattat cctcccgaat ttaaacagca gctcgttgct gcctcctgtg
      301 aacccgggat atccatctca aaact
//
LOCUS       DAJVUN010000447          318 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.460, whole genome shotgun sequence.
ACCESSION   DAJVUN010000447 DAJVUN010000000
VERSION     DAJVUN010000447.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.460"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>318
                     /locus_tag="OQQ76_004310"
     rRNA            <1..>318
                     /locus_tag="OQQ76_004310"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT           80 a           71 c          107 g           60 t
ORIGIN      
        1 actccgtgcc agcagccgcg gtaatacgga gggtgcaagc gttaatcgga attactgggc
       61 gtaaagcgca cgcaggcggt ttgttaagtc agatgtgaaa tccccgggct caacctggga
      121 actgcatctg atactggcaa gcttgagtct cgtagagggg ggtagaattc caggtgtagc
      181 ggtgaaatgc gtagagatct ggaggaatac cggtggcgaa ggcggccccc tggacgaaga
      241 ctgacgctca ggtgcgaaag cgtggggagc aaacaggatt agataccctg gtagtccacg
      301 ccgtaaacga tgtcgact
//
LOCUS       DAJVUN010000448          310 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.461, whole genome shotgun sequence.
ACCESSION   DAJVUN010000448 DAJVUN010000000
VERSION     DAJVUN010000448.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.461"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>310
                     /locus_tag="OQQ76_004311"
     CDS             <1..>310
                     /locus_tag="OQQ76_004311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HCS1970533.1"
                     /translation="FHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFR
                     SLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSV
                     A"
BASE COUNT           89 a           72 c           87 g           62 t
ORIGIN      
        1 tgttccacag cgatcagggc agtcattata cgagcaggca gttccggcag ttattgtggc
       61 gataccagat cagacagagt atgagccggc gcggaaactg ctgggataac agcccaatgg
      121 aacgcttctt caggagtctg aagaacgaat ggatgccggt ggtgggttac gtaagcttca
      181 gcgaggcagc tcacgccata acggactata tcgttggata ttacagcgca ctaagaccgc
      241 acgaatataa cggtgggtta cccccaaacg aatcggaaaa tcgatactgg aaaaactcta
      301 actcggtggc
//
LOCUS       DAJVUN010000449          305 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.462, whole genome shotgun sequence.
ACCESSION   DAJVUN010000449 DAJVUN010000000
VERSION     DAJVUN010000449.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.462"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>305
                     /locus_tag="OQQ76_004312"
     CDS             <1..>305
                     /locus_tag="OQQ76_004312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HCS1970534.1"
                     /translation="VVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG
                     FLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL
                     "
BASE COUNT           56 a           90 c           89 g           70 t
ORIGIN      
        1 gtggtgccga ctttcggcgt gacctacact ggtaactatg agttcccaca accgctgcac
       61 gatgcgctgg ataaattcca ggccgatacc ggtatcgaca tcgacatgca catcgacgct
      121 gccagcggtg gcttcctggc accgttcgtc gccccggata tcgtctggga cttccgcctg
      181 ccgcgtgtga aatcgatcag tgcttcaggc cataaattcg gtctggctcc gctgggctgc
      241 ggctgggtta tctggcgtga cgaagaagcg ctgccgcagg aactggtgtt caacgttgac
      301 tacct
//
LOCUS       DAJVUN010000450          302 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.463, whole genome shotgun sequence.
ACCESSION   DAJVUN010000450 DAJVUN010000000
VERSION     DAJVUN010000450.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.463"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..>302
                     /locus_tag="OQQ76_004313"
     CDS             <1..>302
                     /locus_tag="OQQ76_004313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCS1970535.1"
                     /translation="LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADA
                     TESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKV"
BASE COUNT           63 a           89 c           79 g           71 t
ORIGIN      
        1 cttgaccgcc tttccgatac cgtctctgca cgcaatacct ccggattccg tgaacaggtc
       61 gctgcatggc tggaaaaact cagtgcctct gcggagcttc gacagcagtc tttcgctgtt
      121 gctgctgatg ccactgagag ctgtgaggac cgtgtcgcgc tcacatggaa caatctccgg
      181 aaaaccctcc tggtccatca ggcatcagaa ggccttttcg ataatgatac cggcgctctg
      241 ctctccctgg gcagggaaat gttccgcctc gaaattctgg aggacattgc ccgggataaa
      301 gt
//
LOCUS       DAJVUN010000451          298 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.denovo.464, whole genome shotgun sequence.
ACCESSION   DAJVUN010000451 DAJVUN010000000
VERSION     DAJVUN010000451.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.denovo.464"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..>298)
                     /locus_tag="OQQ76_004314"
     CDS             complement(<1..>298)
                     /locus_tag="OQQ76_004314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HCS1970536.1"
                     /translation="PDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIELVAEGVE
                     TQEQAKYLRRHGVHILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPIMPLR"
BASE COUNT           68 a           84 c           75 g           71 t
ORIGIN      
        1 aacgtaacgg cataatgggc gtgatatgtc cattatgccg ggcgggcggc ggttggctgc
       61 ccgccagcca tttgggaaaa tcacgtagcg gcatcggctg tgcgtacaaa tacccttgca
      121 aaatatgcac gccatgacgg cgcaaatact tcgcctgttc ttgcgtttcc acgccctccg
      181 ccaccagttc aatattcagt ctttgcccca gcgcgatgat gatatcggtc accgtcgagt
      241 taaccgcgtc agaacctata gctgcggtaa atgacttatc aattttcagc acgtcagg
//
LOCUS       DAJVUN010000452         6295 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.guided.204, whole genome shotgun sequence.
ACCESSION   DAJVUN010000452 DAJVUN010000000
VERSION     DAJVUN010000452.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6295
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.guided.204"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            1..630
                     /locus_tag="OQQ76_004315"
                     /pseudo
     CDS             1..630
                     /locus_tag="OQQ76_004315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
     gene            627..1241
                     /locus_tag="OQQ76_004316"
     CDS             627..1241
                     /locus_tag="OQQ76_004316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HCS1970537.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1298..2755)
                     /gene="pepD"
                     /locus_tag="OQQ76_004317"
     CDS             complement(1298..2755)
                     /gene="pepD"
                     /locus_tag="OQQ76_004317"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCS1970538.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            3016..3474
                     /gene="gpt"
                     /locus_tag="OQQ76_004318"
     CDS             3016..3474
                     /gene="gpt"
                     /locus_tag="OQQ76_004318"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HCS1970539.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKCAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3566..4810
                     /gene="frsA"
                     /locus_tag="OQQ76_004319"
     CDS             3566..4810
                     /gene="frsA"
                     /locus_tag="OQQ76_004319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HCS1970540.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKCLC"
     gene            4868..5269
                     /gene="crl"
                     /locus_tag="OQQ76_004320"
     CDS             4868..5269
                     /gene="crl"
                     /locus_tag="OQQ76_004320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HCS1970541.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5308..>6295)
                     /gene="phoE"
                     /locus_tag="OQQ76_004321"
     CDS             complement(5308..>6295)
                     /gene="phoE"
                     /locus_tag="OQQ76_004321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoporin PhoE"
                     /protein_id="HCS1970542.1"
                     /translation="IYNKDGNKLDVYGKVKAMHYMSDNDSKDGDQSYIRFGFKGETQI
                     NGQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRKLGALYDVEAR
                     TDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKK
                     QNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANN
                     IYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGG
                     EDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAIGMTYQF"
BASE COUNT         1534 a         1540 c         1629 g         1592 t
ORIGIN      
        1 acaccccatt ataaggggta cgaataaagt aacggggcag tctattttac agcggcatat
       61 tgcctcgttc tcgcatcatg gtttgcctca aggcagtgac gacgcgctac ggtatattgc
      121 ggaacatgac gatgcgctgg cgtttgcgtg tattaatcgc cagatgatcg ctttgcgcat
      181 aatgcaacaa gttaaggcca cgggaagtcc ggttctggat gtggcgcata actttgttag
      241 cgcgtgtcaa atcggcgatc aacagggctg gttgcatcgt aaaggtgcca cgccggatga
      301 caacggtctg gtgattactc ctggattgta cagcctgttg cgaacgaaaa aacgctccac
      361 tcgctggcgc atggggcagg gcgtaaatgg gggcgcaccg agtgtaaatg gcgtctggca
      421 gcgaaataca cggtgacgca actctcgcgg actgaacttg gcagtcggat aatttgtcgc
      481 gataaacaac tcatctttga agaagcgcca caagcctata aatcggctga aagcgtggtg
      541 caatgtctgg tgcaggccgg tttaattatt cctgtcgcgc ggctgcgtcc ggtgctaacg
      601 ctcaaaaaca gtggagggaa aaaaggatga tcttgctaca actctcctca gcgcaggggc
      661 cggaagaatg ttgtctcgca gtgaaaaagg cgctggacag gctaattaaa gaagctgccc
      721 gacaagacgt cgcggtaacg gtgttggaaa cagaaacggg ccgctactct gacacgctgc
      781 gttcagctct ggtttctctg gatggcgata acgcatgggc attaagcgaa agctggtgtg
      841 gcactattca gtggatttgt ccgagtccgt atcggcctca tcatgggcgc aaaaactggt
      901 ttctgggcat tgggcgtttt accgctgatg agcaggagca atccgatgcg atccggtatg
      961 agacgctgcg ttcgtcgggg ccgggcggtc aacatgtcaa taaaaccgac tcggcggtac
     1021 gcgccacgca tttggcatcc ggtattagcg tgaaggttca gtcagagcgt agtcagcatg
     1081 ctaacaagcg gctggcacga ttgctgattg cctggaagct ggagcagcag caacaggaaa
     1141 atagcgcggt gctgaaatcg cagcggcgaa tgttccatca ccagattgaa cgtggcaacc
     1201 cgagacggac atttacaggg atggctttta tcgaaggata atgaaggatg aaactgccgg
     1261 aaggcgatta aacgccatcc ggcagcaaat caaataatta cttcgccgga atttctttca
     1321 gcagttcagt cagcagtgtc cagtaatgac ctacgctttc gatgtgaact tgctcatccg
     1381 gagagtgtgg accggtgata gttggcccga tagaaaccat gtccatttcc ggatacggtt
     1441 ttttgaacag accacattcc aggcccgcgt ggataatctg gatgttcggc gtcttgttga
     1501 acaggcgctg ataggtttca cgtaccagat gcatcaccgg agaattagcg tccggctgcc
     1561 agccaggata tgcgcctttc gcttcggttt tcgcgccagc cagtttaccc agcgaatcca
     1621 gcatgctcac cacgtagtct ttaccgctgt cgatcagtga acggatcagg cagtgaattt
     1681 ctacgttatt gtcagtcatg gtcaccacac cgacgttcag ggaggtttca accacacctt
     1741 tggctacatc ggagttgcgg atcacaccgt tcggggtggc gttcagcaga cgaataaagg
     1801 tatcgcgaga tttcgcaatc agggcagctt tatcgttcgc tacagagtcc agcaacaagg
     1861 ccagattttt ctctttctct gccagctcgt ttttcaggat ctcctgatag gtattcacca
     1921 gagatttcag tgcgtcgact ttatcagctg cgacagcaat ggtcgcaaag gcttcacgcg
     1981 ggatggcgtt acgcagtgtg ccgccgttga aatcgataag gcgcaggtcc agttcttctg
     2041 catgacccgc caggaagcgc accagcagtt tgttggcatt acccaggcca acgtggattt
     2101 caccgccgga gtgaccgcct ttcagacctt ttaaggttaa cttgaaggtt tcaaaaccag
     2161 ctggaaccgc ttcacgatct aaatgcaggt tggaggtgaa gtcgataccc cccgcacaac
     2221 ccatgtagat ttcaccttct tcttcggagt cggtgttaat cagaatatca gcctgcaacc
     2281 agttgctctg taagccaaaa gcaccgtcca taccggcttc ttcggtcatg gtcagcagca
     2341 cttccagcgg accgtgaacc acgttttcgt cagccagaac cgccagtgca gaggccatac
     2401 caatgccgtt atccgcaccc agcgtggtgc cgcgcgcttt aacccattcg ccatcaatat
     2461 aaggctggat aggatctttc gtgaagtcat gcacggtgtc gttatttttc tgcggcacca
     2521 tatcgaggtg ggcctgtaag acgaccggtt tacgattttc catacctgcg gtagcaggtt
     2581 tacgaatcag gatattacct acctgatcgc gttcgacatg gaaacctttc tcttttgccc
     2641 aaccaacaat gtattcagcg agttgctctt catgatagga cgggtgagga atagaacaga
     2701 ttttggcaaa aatatcccac agcggctgtg gagataattg agacagttca gacacgttaa
     2761 gtctccttgt cgatcacccg caaaacagta ttgcaggtca cagggttagc agaaaatgtt
     2821 gtcaacacaa gacaggcttg cgagatatgt ttgagaatac cactttatcc cgcgtcaggg
     2881 agaggcagtg cgtaaaaaga cgcggactca tgtgaaatac tggtttttag tgcgccagat
     2941 ctctataatc tcgcgcaacc tattttcccc tcgaacactt tttaagccgt agataaacag
     3001 gctgggacac ttcacatgag cgaaaaatac atcgtcacct gggacatgtt gcagatccat
     3061 gcacgtaaac tcgcaagccg actgatgcct tctgaacaat ggaaaggcat tattgccgta
     3121 agccgtggcg gtctggtacc gggtgcgtta ctggcgcgtg aactgggtat tcgtcatgtc
     3181 gataccgttt gtatttccag ctacgatcac gacaaccagc gagagcttaa agtgctgaaa
     3241 tgcgcagaag gcgatggcga aggcttcata gttattgatg acctggtgga taccggtggt
     3301 actgctgttg cgattcgtga aatgtatcca aaagcgcact ttgtcaccat cttcgcaaaa
     3361 ccggctggtc gtccgctggt tgatgactat gttgttgata ttccgcaaga tacctggatc
     3421 gaacagccgt gggatatggg cgtcgtattc gtcccgccaa tctccggtcg ctaatctttt
     3481 caacgcctgg cactgccggg cgttgttctt tttaacttca ggcaggttac aatagtttcc
     3541 agtaagtatt ctggaggctg catccatgac acaggcaaac ctgagcgaaa ccctgttcaa
     3601 accccgcttt aaacatcctg aaacctcgac gctagtccgc cgctttaatc acggcgcaca
     3661 accgcctgtg cagtcggctc ttgatggtaa aaccatccct cactggtatc gcatgattaa
     3721 ccgtctgatg tggatctggc gcggtattga cccacgtgaa atcctcgacg tccaggcacg
     3781 tattgtgatg agcgatgctg aacgtaccga cgatgattta tacgatactg tgattggcta
     3841 ccgtggtggc aactggattt atgagtgggc cacccaggcg atggtgtggc aacaaaaagc
     3901 ctgtgcggaa gaagatccgc aactcagtgg tcgacactgg ctgcatgcgg ctacgttgta
     3961 caacattgcc gcctatcctc atctgaaagg agatgacctg gccgagcaag cgcaggcttt
     4021 atcaaaccgc gcctatgaag aggccgccca gcgtctgccg ggcacgatgc ggcagatgga
     4081 gtttaccgta cccggcggtg cgcccatcac cggctttttg catatgccga aaggcgatgg
     4141 cccgttcccg acagtattaa tgtgtggtgg tctggatgcg atgcagacgg actattacag
     4201 cctgtatgaa cgttattttg cgccgcgcgg cattgtgatg ctgactattg atatgccgtc
     4261 ggtgggcttt tcttcaaaat ggaagctcac ccaggactcc agcctgttgc atcagcacgt
     4321 cttaaaggcg ctgcctaacg taccgtgggt ggatcacact cgcgtcgcgg cctttggttt
     4381 ccgtttcggc gctaacgttg ccgtgcgtct ggcatatctt gaatcgccgc gtctgaaagc
     4441 ggttgcctgt cttggtccgg tagttcatac cctgttgagt gattttaagt gccagcaaca
     4501 ggtgccggaa atgtatcttg acgttctggc gagtcgtttg gggatgcatg atgcttccga
     4561 cgaagcgtta cgcgtggagc tgaatcgcta ttcattaaaa gtgcaaggat tgctgggacg
     4621 tcgctgccca acgccaatgt tatcaggcta ctggaagaac gatccgttca gcccggaaga
     4681 ggactcacgc ttaatcacct catcatctgc tgacggtaaa ttattagaga tcccatttaa
     4741 cccggtgtat cggaattttg acaaaggtct tcaggaaatc accggctgga tcgaaaaatg
     4801 cttgtgttaa aaatttgcta aattttgcca atttggtaaa acagttgcat cacaacagga
     4861 gatagcaatg acgttaccga gtggacaccc gaagagcaga ttgatcaaaa aatttaccgc
     4921 actaggcccg tatattcgtg aaggtaagtg cgaagataat cgattctttt tcgattgtct
     4981 ggctgtatgc gtcaacgtga aaccggcacc ggaagtgcgt gaattctggg gctggtggat
     5041 ggagctggaa gcgcaggaat cccgttttac ctacagctac cagtttggtc tgttcgataa
     5101 agcaggcgac tggaagagtg ttcctgtaaa agatactgaa gtggttgaac gactggagca
     5161 caccctgcgt gagtttcacg agaagctgcg tgaactgctg acgacgctga atctgaagct
     5221 ggaaccggcg gatgattttc gtgacgagcc ggtgaagtta acggcgtgag tgaaatgtgc
     5281 cggatgcatc acatccggca atatctatta aaactgatac gtcatcccaa tcgcgacaat
     5341 atcatcatta ttaatattca atttgttatc gctatccagt tggttgattt tataatcaac
     5401 aaatgctgac atatttttgt tgaaataata cgtagcaccg acgtcgatat aattaaccag
     5461 atcttcacca ccgatgccct caatatcttt ccctttcgat aagacataac ccagcgatgg
     5521 acgcagacca aagtcaaact ggtattgagc gaccgcttca aagttctgtg tcttattggc
     5581 aaagccgcca gttattggcg tcattttgcg agtttcagaa tagaaagttg ccagataaat
     5641 attattggca tcgtatttca gacctgttgc ccatgcttct gcacgcttgc ctgtgccacg
     5701 gctttgcagg ttctgctcgt tggtgcgatc tgagttggta taggccccac taatggcgaa
     5761 atcgctgccg ccaaagtcat atgtcaatga cgtgccgaag ccatcgccgt tttgcttttt
     5821 aacgtcgcgg ttttcgtttt tcccttgata ttgcagggtt aagttcaggc catcgataac
     5881 gccgaagaag tcggtgttcc gatacgtcgc cagaccgctg gcgcgtttgg tcataaagtt
     5941 gtcggtctgc gccgaggagt cgccaccaaa ttccgggaac atatcggtcc tggcttccac
     6001 gtcatacaac gcgcccagct tacgaccata atcgaaagaa cccaaatctt tatatttcaa
     6061 cccggcaaaa gcgagacgcg ttttttgctg tgcagtatca ctctctgctt tattaccggc
     6121 aaactctgct tcccaacgac cataaccagt cagttgaccg ttaatttgtg tttcgccttt
     6181 aaaaccaaaa cggatataac tctggtcgcc atctttactg tcgttatcac tcatataatg
     6241 catggcttta actttgccat agacatccag tttattaccg tctttgttat atatt
//
LOCUS       DAJVUN010000453         4954 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.guided.234, whole genome shotgun sequence.
ACCESSION   DAJVUN010000453 DAJVUN010000000
VERSION     DAJVUN010000453.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4954
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.guided.234"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(36..3041)
                     /locus_tag="OQQ76_004322"
     CDS             complement(36..3041)
                     /locus_tag="OQQ76_004322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
                     /protein_id="HCS1970543.1"
                     /translation="MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSR
                     GDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTR
                     REHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILP
                     GATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGP
                     VTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQK
                     RMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALA
                     SACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRV
                     RRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVIN
                     KEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRS
                     LGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPD
                     SLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMA
                     EACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGG
                     GEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDS
                     IFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDH
                     DADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLT
                     QAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYT
                     DGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINML
                     GHYSFTLAELVTKGHLRPLKEASEAENVA"
     gene            3205..3762
                     /locus_tag="OQQ76_004323"
     CDS             3205..3762
                     /locus_tag="OQQ76_004323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HCS1970544.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGD
                     MGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTG
                     ATEIAHQLSIARSTVYKILEDERAS"
     gene            3945..4805
                     /locus_tag="OQQ76_004324"
     CDS             3945..4805
                     /locus_tag="OQQ76_004324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HCS1970545.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
BASE COUNT         1244 a         1222 c         1233 g         1255 t
ORIGIN      
        1 taggggtctg acgctcagtg gaacgaaaac tcacgttaag caacgttttc tgcctctgac
       61 gcctctttta atggtctcag atgtcctttg gtcaccagtt ctgccagcgt gaaggaataa
      121 tggccgagca tattgatatg tccgtggcaa agcggggaga ggcgtgcgat atcttcatca
      181 ttcagtgttt caccctgcgc ccggagatga tccagggctg cctgcatata aatagtgttc
      241 cataacacga cggcgttagt gaccagcccc agtgtgccca gttgatcttc ctgaccgtcg
      301 gtatatcgtt ttcttatctc acctttttga ccgtgacaga tggctctggc aacggcatgg
      361 cgactttctc cccgattaag ctgggtcaga atgcgccggc ggtaatcttc atcatcaata
      421 taattaagca gatacagcgt tttgttgatg cgccccactt caatgattgc ctgagtcagt
      481 ccggaaggac gttcactttt cagcaatgaa cggaccagca ctgaaacctg tactttgccc
      541 agcttcaggg agccagcggt ccggatcatt tcgtcccact gaaggactat ttttcgggga
      601 tctgattgcc ctctggcaat atcattcagc acgccatagt cggcatcatg gtccattcgc
      661 cagaaaaccg aagcaccggc atcagccagg cgtggagaaa actggtatcc cagcagccag
      721 aaaaggccaa agacaagttc gctggcacct gctgtatcgg tcataatttc ggttggattc
      781 agcccggtct cctgttccag aagaccttcc agcacaaaga tagagtccct cagcgtcccc
      841 ggtataacga tgccatgaaa gccggaatac tgatcggaca caaagttgta ccaggtgatc
      901 cctctgttat taccaaagta tttgcggttc ggtccggcat tgattgttct gactggcgta
      961 acaaagcgca ttccatctgc agatgccact tctcctccac cccatatctg tgccagtggc
     1021 agcgttgcct gaaaatcaac cagtctggca ttagcgctgg tgatagtttc agcccgcaga
     1081 tagttcgctt ttgtccagtt cagccggtgt cgggtcagtg caggaacatt tgatctgatc
     1141 agtggttcca gaccgatatt gcaggcttca gccatcagca cggcgctgat gctgacgggc
     1201 agatcatcaa ctctggcact ggcttcacta gcatggaaaa actcatcagc aaatccggta
     1261 tgggcgttaa tttcgagcag caactccgtt aaatccaccg gagggagtag atcactgatc
     1321 attttgctca gtcgtttcag actgtccggc tcatcaagac tggcgagggg agaaattgtc
     1381 aaccggggct tcgggccaga aacatcgagt tcgacagcct cattttcgca aagacgtgca
     1441 gcaacctgtc tgtaacgact atcaagctga tgacccagag attttattgc ttcctgcggg
     1501 tctgtcgggt gccccaaaga acgataaacc ttaatccggt ttgcctgcca gtcagcaccc
     1561 tgtagtaatc ttgcacgagg atctccccac cggttactgc cggtaacgta gacatccctc
     1621 cgcctcagac tatcctgcag tttactgaga aagcagagcg tgtatcccct gcgggtgata
     1681 tgtttttcct tgttaatcac cagccgtttc catgaccgac tgataatttc cgttggtgcg
     1741 tcgtcaaaaa actgccgccg tgagctgaac tcccggctga ggtagtcaca ggcattcaga
     1801 gtggtaaccc cggcaggtgc ggatgaaaat ttaacggtat tcagcagatg gggcaggaaa
     1861 cgacgaacgc gcccgtactg ctccaccatt tcttcatgaa aattatcgtc tgagggccgg
     1921 gcaatttcac ggacaagcgt gatgatttca gccagctttt gccttgggat gtagctgaac
     1981 acctcagcac gaatcgattc gtccggtgtt tcttctttca gcaggtacga acatgcgctg
     2041 gcgagcgcca atgcagattt atccagatcc ttcagcgagc ggagccgttt tttctgccca
     2101 atctttctgg cgtcacggat gataacggcc agcatggcgt ccagaacgtc caatgcatca
     2161 tccagcgcca gcgtttccca tgcaaggaca aaggcaacca gaaccgccat ccttttctgc
     2221 ggtgacatcc tggcaatatt gaacaccgaa gtcataccag cataacgtgc gagatttttc
     2281 aggcgcacag ccgggagtgt actcaggttt tcagcatgca ggccaaaatc gttcagagtt
     2341 ttccagcgtt caattgcttc attaaacgcc ggaccactga tggtcacagg gccctttttc
     2401 agtgattcca gtaaagacag gcggctgcaa tcagttggcc ccagcagcat ctccagctgt
     2461 gaacgctgtt cggctgacgg tatcagtgcc agtttgttcc acaggcgcaa cgtcgccttt
     2521 tcccttacct ctgaaatcaa ccgggtcagc gtagtggctc cggggagaat aatacgatgt
     2581 tgcataagcc accctgtcgc cagatcgaaa agcaggccag gacgttcgtt gcttatccag
     2641 ctccgggtat ataaaagacg ggtaaggcga aatgtccagg gccaggcaaa ttcacgatac
     2701 tgatagtgct gacgtatcag cgctgcatgc tcacggcggg tattttccct ctgaccgtat
     2761 tctgcaagaa cggtgatatc acgaatcccg agctgtctgg cggtaaaatg ccggacgccg
     2821 gaaggaatat gattcatatc ggtgaggaag gtgcccagaa aacggacaca tccaatttgc
     2881 agggcaatgc ccagacggtt gtgatcacct ctgctttttc cgataaattc cttgtctgct
     2941 tcatcaaggt gaaaatatcg tgccagctga agctcatccg gttcaccggt gaatctgcca
     3001 tagctttcag tctgctcagt ggtcagaaag tcaacgggca tatcggcctc cctgcctgac
     3061 gggcatttag taacattttt ccaaccgtac gaaatgttat aaattatcgg acatcgtaaa
     3121 actgttacat taatatgtct attaaatcgt aaatttgtaa taatagacat gagttgtccg
     3181 atattcgatt taaggtacat ttttatgcga ctttttggtt acgctcgggt ctcaaccagt
     3241 cagcagtctc ttgatcttca ggtcagagca ctcaaagacg caggtgtgaa agcaaaccgt
     3301 atatttaccg ataaggcatc cggcagttca acagaccggg aagggctgga tttgctgagg
     3361 atgaaggtgg aggaaggtga tgtcattctg gttaagaagc tcgaccgtct tggccgcgac
     3421 actgccgata tgatccaact gataaaggaa tttgacgctc agggcgtggc agtccggttc
     3481 attgatgacg ggatcagtac cgacggtgat atggggcaaa tggtggtcac catcctgtcg
     3541 gctgtggcac aggctgaacg ccggaggatc ctagaacgca cgaatgaggg ccgacaggaa
     3601 gcaaagctga aaggaatcaa atttggccgc aggcgtaccg tggacaggaa cgtcgtgctg
     3661 acgcttcatc agaagggcac tggtgcaacg gaaattgctc atcagctcag tattgcccgc
     3721 tccacggttt ataaaattct tgaagacgaa agggcctcgt gatacgccta tttttatagg
     3781 ttaatgtcat gataataatg gtttcttaga cgtcaggtgg cacttttcgg ggaaatgtgc
     3841 gcggaacccc tatttgttta tttttctaaa tacattcaaa tatgtatccg ctcatgagac
     3901 aataaccctg gtaaatgctt caataatatt gaaaaaggaa gagtatgagt attcaacatt
     3961 ttcgtgtcgc ccttattccc ttttttgcgg cattttgcct tcctgttttt gctcacccag
     4021 aaacgctggt gaaagtaaaa gatgctgaag atcagttggg tgcacgagtg ggttacatcg
     4081 aactggatct caacagcggt aagatccttg agagttttcg ccccgaagaa cgttttccaa
     4141 tgatgagcac ttttaaagtt ctgctatgtg gtgcggtatt atcccgtgtt gacgccgggc
     4201 aagagcaact cggtcgccgc atacactatt ctcagaatga cttggttgag tactcaccag
     4261 tcacagaaaa gcatcttacg gatggcatga cagtaagaga attatgcagt gctgccataa
     4321 ccatgagtga taacactgct gccaacttac ttctgacaac gatcggagga ccgaaggagc
     4381 taaccgcttt tttgcacaac atgggggatc atgtaactcg ccttgatcgt tgggaaccgg
     4441 agctgaatga agccatacca aacgacgagc gtgacaccac gatgcctgca gcaatggcaa
     4501 caacgttgcg caaactatta actggcgaac tacttactct agcttcccgg caacaattaa
     4561 tagactggat ggaggcggat aaagttgcag gaccacttct gcgctcggcc cttccggctg
     4621 gctggtttat tgctgataaa tctggagccg gtgagcgtgg gtctcgcggt atcattgcag
     4681 cactggggcc agatggtaag ccctcccgta tcgtagttat ctacacgacg gggagtcagg
     4741 caactatgga tgaacgaaat agacagatcg ctgagatagg tgcctcactg attaagcatt
     4801 ggtaactgtc agaccaagtt tactcatata tactttagat tgatttaaaa cttcattttt
     4861 aatttaaaag gatctaggtg aagatccttt ttgataatct catgaccaaa atcccttaac
     4921 gtgagttttc gttccactga gcgtcagacc ccta
//
LOCUS       DAJVUN010000454         4800 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.guided.238, whole genome shotgun sequence.
ACCESSION   DAJVUN010000454 DAJVUN010000000
VERSION     DAJVUN010000454.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4800
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.guided.238"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            <1..280
                     /locus_tag="OQQ76_004325"
     CDS             <1..280
                     /locus_tag="OQQ76_004325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fumarate reductase subunit D"
                     /protein_id="HCS1970546.1"
                     /translation="IAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLM
                     IVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGIVTI"
     gene            343..1476
                     /locus_tag="OQQ76_004326"
     CDS             343..1476
                     /locus_tag="OQQ76_004326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HCS1970547.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QIGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            1565..2098
                     /gene="blc"
                     /locus_tag="OQQ76_004327"
     CDS             1565..2098
                     /gene="blc"
                     /locus_tag="OQQ76_004327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin Blc"
                     /protein_id="HCS1970548.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(2095..2412)
                     /gene="sugE"
                     /locus_tag="OQQ76_004328"
     CDS             complement(2095..2412)
                     /gene="sugE"
                     /locus_tag="OQQ76_004328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter SugE"
                     /protein_id="HCS1970549.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(2594..2740)
                     /gene="ecnB"
                     /locus_tag="OQQ76_004329"
     CDS             complement(2594..2740)
                     /gene="ecnB"
                     /locus_tag="OQQ76_004329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HCS1970550.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(2851..2976)
                     /gene="ecnA"
                     /locus_tag="OQQ76_004330"
     CDS             complement(2851..2976)
                     /gene="ecnA"
                     /locus_tag="OQQ76_004330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HCS1970551.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(3028..3594)
                     /gene="efp"
                     /locus_tag="OQQ76_004331"
     CDS             complement(3028..3594)
                     /gene="efp"
                     /locus_tag="OQQ76_004331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HCS1970552.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            3636..4685
                     /gene="epmB"
                     /locus_tag="OQQ76_004332"
     CDS             3636..4685
                     /gene="epmB"
                     /locus_tag="OQQ76_004332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HCS1970553.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
BASE COUNT         1205 a         1226 c         1217 g         1152 t
ORIGIN      
        1 tattgcgccg gtgatgatcc tgctggtggg tattctgctg ccactggggc tgtttccggg
       61 tgatgcgctg agctacgagc gcgttctggc gttcgcgcag agcttcattg gtcgcgtatt
      121 cctgttcctg atgatcgttc tgccgctgtg gtgtggttta caccgtatgc accacgcgat
      181 gcacgatctg aaaattcacg tgcctgcggg caaatgggtt ttctacggtc tggctgctat
      241 cctgacagtt gtcacgctga ttggtatcgt tacaatctaa cgtatcgcca atgtaaatcc
      301 ggcccgccta tggcgggccg ttttgtatgg aaaccagacc ttatgttcaa aacgacgctc
      361 tgcgccttat taattaccgc ctcttgctcc acatttgctg cccctcaaca aatcaacgat
      421 attgtgcatc gcacaattac cccgcttata gagcaacaaa agatccccgg tatggcggtg
      481 gcggtaattt atcagggtaa accttattac tttacctggg gctatgcgga catcgccaaa
      541 aagcagcccg tcacacagca aacgttgttt gagttaggtt cggtcagcaa aacatttacg
      601 ggcgtgcttg gtggcgacgc tattgctcga ggggaaatca agttaagcga tcccgcaaca
      661 aaatactggc ctgaacttac cgctaaacag tggaatggga tcacactatt acatcttgcg
      721 acctacaccg ctggcggcct gccattgcag atgccggatg aagtgaaatc ctcaagcgac
      781 ttgctgcgct tctatcaaaa ctggcagcct gcatgggctc caggaacaca acgtctgtat
      841 gccaactcca gtatcggttt gttcggcgca ctggctgtga agccgtctgg tttgagtttt
      901 gagcaggcga tgcaaactcg tgtcttccag ccactcaaac tcaaccatac gtggattaat
      961 gtaccgcccg cagaagaaaa gaattacgcc tggggatatc gcgaaggcaa ggcagttcat
     1021 gtttcgccag gggcgttaga tgctgaagct tatggtgtga agtcgaccat tgaagatatg
     1081 gcccgctggg tgcaaagcaa tttaaccccc cttgatatca atgagaaaac gcttcaacaa
     1141 gggatacaac tggcacaatc tcgctactgg caaatcggcg atatgtatca gggcctgggc
     1201 tgggaaatgc tggactggcc ggtcaatcct gacagcatca ttaacggcag tgacaataaa
     1261 attgcactgg cagcacgccc ggtaaaagcg attaagcccc caactcctgc agtacgcgca
     1321 tcatgggtac ataaaacggg ggcgaccggc ggatttggta gctatgtcgc gtttattcca
     1381 gaaaaagagc tgggtatcgt gatgctggct aacaaaaact atcccaatcc agcgagagtc
     1441 gccgccgcct gtcagattct caacgctcta cagtaaaatt tcatcgggtc cgaattttcg
     1501 gaccttttct gcgcttttcc ttgctgtcat ctacacttag aaaaaaacca gtaaggaaac
     1561 atttatgcgc ctgctccctc tcgttgccgc agcgacagct gcatttctgg tcgttgcctg
     1621 cagttctcct acgccgccgc gtggcgtgac agtagtgaat aatttcgacg ctaaacgcta
     1681 tctcggtacc tggtatgaga ttgcccgttt tgatcaccgt tttgaacgtg gactggaaaa
     1741 agtcaccgca acatacagtc tgcgtgatgg cggcggcctg aatgtcatca ataaaggcta
     1801 taaccctgac agagaaatgt ggcagcagag tgaagggaaa gcgtacttta ccggcgcacc
     1861 aacacgcgct gcgctgaaag tgtcattctt tggtcctttc tatggcggtt ataacgtcat
     1921 tgcacttgat cgggaatacc gccatgcgct ggtttgcggc ccggaccgcg actacctgtg
     1981 gatactctcc cgcacgccaa ccatttctga cgaagtgaaa caggagatgc tggcagtcgc
     2041 gacccgggaa gggtttgatg tcagtaagtt tatttgggta cagcagcccg gtagttagtg
     2101 agtgctgagt ttcagaccaa taatccccaa tacgattaac gccagactcg ccaggcgcat
     2161 cgggttagcg gactcaccga gcagcacaat gccggtgata gccgcgccga ctgcgccaat
     2221 acccgtccac acggcataag ccgtccctac tggtaacgat ttcatcgccc aggcaagtag
     2281 cgccatactg acaatcatcg ccgtcacggt aataacactc ggcgtcaaac gactaaagcc
     2341 gtgggtatat ttcaggccaa cggcccatac cacttccagc agaccagcaa taactaagat
     2401 aatccaggac atatcaggct ccggagaatt ggggccgtcc ccggtgaaaa gacgcgtttg
     2461 caggtcgtcc tgcaaagctg atggttgaac ggatattttg ccaggtggca ggggaatttc
     2521 aactattacc ttagtgacta tcgcagaaaa aacaaacggc acgacacagc tgtcgtaccg
     2581 ttattgctta ttgctattgc tgcgctttcg ttgctgcgcc agaaatcgcg ttaccgccat
     2641 cagaaatgtc ttcaccaacg ccacgcgtgg tgttgcaggc agttaatact gttgaaagca
     2701 ccagaacaga aaagatcgct gcaattgtct tcttcaccat aacgtcttcc ttttaggtaa
     2761 tgttatttat gtttgcctat agcaaattaa taatagacaa catcgccaaa aatgacggaa
     2821 atctgatgat ttttcggaag agaagaaaaa ttagctggca gcgcgagaga tggagttgcc
     2881 gagatgtttg atgtcttcgc cgaaaccgcg agcggtgtta cagcccgtga gcagcgtact
     2941 agcaagcaaa acaagaacga taaggcgttt catcatctct gacctgaata agtgatggtg
     3001 cagcctgcag gccgcaccac aaccgcatta cttcacgcga gagacgtatt caccagagcg
     3061 ggtatccact ttgatgactt cgccgatttg tacgaacagc ggaaccttaa ccacagcgcc
     3121 agtagacagg gtagccggtt tgccgccagt acctgcggta tcacctttca ggcccggatc
     3181 ggtatcaacg atttccagtt caacgaagtt cggcggagta acggagatcg gctgaccatt
     3241 ccacagagtt acgatacact ctgcctgatc cagcagccat ttagcgttat cgccaattgc
     3301 ttttgcatca gcagacagct gctcgaaagt ttcgttgttc atgaagtgcc agaactcacc
     3361 gtcgttgtac aggtaagtca ggttcatatc gacaacatca gcgccttcag cggaatcagt
     3421 agatttgaag gttttttcta cgcgagtacc ggtcagcaga cgacgcagtt taacgcgagc
     3481 aaatgcctgg cctttacccg gttttacgaa ttcactcgct tcaaccgcgt aaggttcgcc
     3541 gtctaacatg attttaagac cagcacgaaa atcgttgcta tagtacgttg ccataaggcc
     3601 ctctgaaatt tgttaattgg tagctaagcc acaaaatggc acatattgta accctaaata
     3661 ccccatccag agaagattgg ttaacgcaac ttgccgatgt tgtgaccgat cctgatgaac
     3721 ttctgcgtct tttgaatata gacgcggacg aaaaactgtt ggccggacgc agcgccaaaa
     3781 agctgtttgc cctgcgtgtg ccccgctcat ttatcgatcg catggagaaa ggcaatccgg
     3841 acgatcctct tttgcgtcag gtacttacct cgcaagatga gtttgtcgtc gcgtccggat
     3901 tctccaccga cccactggaa gaacagcaca gcgtagtgcc tggtttgttg cataaatacc
     3961 acaaccgggc gcttttgctg gtcaaaggcg gctgcgcggt aaattgccgc tattgcttcc
     4021 gtcgccactt cccctatgcc gaaaatcagg gcaacaagcg taactggcag actgcacttg
     4081 agtatgttgc tgcgcatccg gaactggacg agatgatttt ctccggcggc gatccgctga
     4141 tggcgaaaga tcacgagctg gactggttgc tcacacaact ggaagccatc ccgcatatca
     4201 aacgtctgcg gattcacagc cgtctgccga ttgtgatccc ggcacgcatc acagatgcgc
     4261 tggttgaacg cttttcacat tctacgctgc aaatcctgct ggtgaatcac atcaaccatg
     4321 ccaatgagat agatgaaaca ttccgtcagg cgatggctaa gttgcgccgg gtaggcgtta
     4381 ctttgctgaa ccagagcgtt ctgttacgtg atgtgaacga taacgcacaa acgctggcaa
     4441 acctgagtaa tgcgttgttc gatgccggcg tgatgccgta ttacctgcat gtgctcgata
     4501 aagtacaggg cgcggcgcat tttatggtga gtgatgacga agcacggcag attatgcgtg
     4561 agttgctgac attggtgtcg ggatatctgg tgccgaaact ggcgcgagaa attggcggcg
     4621 aacccagcaa aacgccgctg gatctccagc tacgccagca gttactgatt aaacagggaa
     4681 gttaaacatt aaaattgcct gatgcgctac gcttatcagg cctacatcgt gcattgaaat
     4741 tgaatggatt tgcaatgaac tgtaggccgg ataaggcgtt tacgccgcat ccggcaagag
//
LOCUS       DAJVUN010000455         3595 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.guided.270, whole genome shotgun sequence.
ACCESSION   DAJVUN010000455 DAJVUN010000000
VERSION     DAJVUN010000455.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3595
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.guided.270"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..142)
                     /locus_tag="OQQ76_004333"
     CDS             complement(<1..142)
                     /locus_tag="OQQ76_004333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HCS1970554.1"
                     /translation="MLTDTKLRNLKPRDKLYKVNDREGLYVGVASENGIYGHSRFCNT
                     DFD"
     gene            472..1287
                     /gene="sul2"
                     /locus_tag="OQQ76_004334"
     CDS             472..1287
                     /gene="sul2"
                     /locus_tag="OQQ76_004334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HCS1970555.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            1348..2151
                     /locus_tag="OQQ76_004335"
                     /note="aph(3'')-Ib"
     CDS             1348..2151
                     /locus_tag="OQQ76_004335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HCS1970556.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            2151..2987
                     /locus_tag="OQQ76_004336"
     CDS             2151..2987
                     /locus_tag="OQQ76_004336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HCS1970557.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(3094..3498)
                     /locus_tag="OQQ76_004337"
                     /pseudo
     CDS             complement(3094..3498)
                     /locus_tag="OQQ76_004337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
BASE COUNT          746 a         1009 c          988 g          852 t
ORIGIN      
        1 cgtcaaaatc ggtgttgcaa aaacgggagt gaccatagat tccgttttct gaggcgaccc
       61 ccacatagag accttcccgg tcattcactt tgtagagttt gtccctgggc ttgagattgc
      121 gcagcttggt atcggtcagc atgtaccttg tccttcttcg tctccgatac ccactctatt
      181 gtaaacaaga catttttatc ttttatattc aatggcttat tttcctgcta attggtaata
      241 ccatgaaaaa taccatgctc agaaaaggct taacaatatt ttgaaaaatt gcctactgag
      301 cgctgccgca cagctccata ggccgctttc ctggctttgc ttccagatgt atgctattct
      361 gctcctgcag ctaatggagc accgcaaaca ggttactcgc ctggggattc cctttcgacc
      421 cgagcatccg tatgagactc atgctcgatt attattatta tagaagcccc catgaataaa
      481 tcgctcatca ttttcggcat cgtcaacata acctcggaca gtttctccga tggaggccgg
      541 tatctggcgc cagacgcagc cattgcgcag gcgcgtaagc tgatggccga gggggcagat
      601 gtgatcgacc tcggtccggc atccagcaat cccgacgccg cgcctgtttc gtccgacaca
      661 gaaatcgcgc gtatcgcgcc ggtgctggac gcgctcaagg cagatggcat tcccgtctcg
      721 ctcgacagtt atcaacccgc gacgcaagcc tatgccttgt cgcgtggtgt ggcctatctc
      781 aatgatattc gcggttttcc agacgctgcg ttctatccgc aattggcgaa atcatctgcc
      841 aaactcgtcg ttatgcattc ggtgcaagac gggcaggcag atcggcgcga ggcacccgct
      901 ggcgacatca tggatcacat tgcggcgttc tttgacgcgc gcatcgcggc gctgacgggt
      961 gccggtatca aacgcaaccg ccttgtcctt gatcccggca tggggttttt tctgggggct
     1021 gctcccgaaa cctcgctctc ggtgctggcg cggttcgatg aattgcggct gcgcttcgat
     1081 ttgccggtgc ttctgtctgt ttcgcgcaaa tcctttctgc gcgcgctcac aggccgtggt
     1141 ccgggggatg tcggggccgc gacactcgct gcagagcttg ccgccgccgc aggtggagct
     1201 gacttcatcc gcacacacga gccgcgcccc ttgcgcgacg ggctggcggt attggcggcg
     1261 ctgaaagaaa ccgcaagaat tcgttaactg cacattcggg atatttctct atattcgcgc
     1321 ttcatcagaa aactgaagga acctccattg aatcgaacta atattttttt tggtgaatcg
     1381 cattctgact ggttgcctgt cagaggcgga gaatctggtg attttgtttt tcgacgtggt
     1441 gacgggcatg ccttcgcgaa aatcgcacct gcttcccgcc gcggtgagct cgctggagag
     1501 cgtgaccgcc tcatttggct caaaggtcga ggtgtggctt gccccgaggt catcaactgg
     1561 caggaggaac aggagggtgc atgcttggtg ataacggcaa ttccgggagt accggcggct
     1621 gatctgtctg gagcggattt gctcaaagcg tggccgtcaa tggggcagca acttggcgct
     1681 gttcacagcc tatcggttga tcaatgtccg tttgagcgca ggctgtcgcg aatgttcgga
     1741 cgcgccgttg atgtggtgtc ccgcaatgcc gtcaatcccg acttcttacc ggacgaggac
     1801 aagagtacgc cgcagctcga tcttttggct cgtgtcgaac gagagctacc ggtgcggctc
     1861 gaccaagagc gcaccgatat ggttgtttgc catggtgatc cctgcatgcc gaacttcatg
     1921 gtggacccta aaactcttca atgcacgggt ctgatcgacc ttgggcggct cggaacagca
     1981 gatcgctatg ccgatttggc actcatgatt gctaacgccg aagagaactg ggcagcgcca
     2041 gatgaagcag agcgcgcctt cgctgtccta ttcaatgtat tggggatcga agcccccgac
     2101 cgcgaacgcc ttgccttcta tctgcgattg gaccctctga cttggggttg atgttcatgc
     2161 cgcctgtttt tcctgctcat tggcacgttt cgcaacctgt tctcattgcg gacacctttt
     2221 ccagcctcgt ttggaaagtt tcattgccag acgggactcc tgcaatcgtc aagggattga
     2281 aacctataga agacattgct gatgaactgc gcggggccga ctatctggta tggcgcaatg
     2341 ggaggggagc agtccggttg ctcggtcgtg agaacaatct gatgttgctc gaatatgccg
     2401 gggagcgaat gctctctcac atcgttgccg agcacggcga ctaccaggcg accgaaattg
     2461 cagcggaact aatggcgaag ctgtatgccg catctgagga acccctgcct tctgcccttc
     2521 tcccgatccg ggatcgcttt gcagctttgt ttcagcgggc gcgcgatgat caaaacgcag
     2581 gttgtcaaac tgactacgtc cacgcggcga ttatagccga tcaaatgatg agcaatgcct
     2641 cggaactgcg tgggctacat ggcgatctgc atcatgaaaa catcatgttc tccagtcgcg
     2701 gctggctggt gatagatccc gtcggtctgg tcggtgaagt gggctttggc gccgccaata
     2761 tgttctacga tccggctgac agagacgacc tttgtctcga tcctagacgc attgcacaga
     2821 tggcggacgc attctctcgt gcgctggacg tcgatccgcg tcgcctgctc gaccaggcgt
     2881 acgcttatgg gtgcctttcc gcagcttgga acgcggatgg agaagaggag caacgcgatc
     2941 tagctatcgc ggccgcgatc aagcaggtgc gacagacgtc atactagata tcaagcgact
     3001 tctcctatcc cctgggaaca catcaatctc accggagaat atcgctggcc aaagccttag
     3061 cgtaggattc cgccccttcc cgcaaacgac cccaaacagg aaacgcagct gaaacgggaa
     3121 gctcaacacc cactgacgca tgggttgttc aggcagtact tcatcaacca gcaaggcggc
     3181 actttcggcc atccgccgcg ccccacagct cgggcagaaa ccgcgacgct tacagctgaa
     3241 agcgaccagg tgctcggcgt ggcaagactc gcagcgaacc cgtagaaagc catgctccag
     3301 ccgcccgcat tggagaaatt cttcaaattc ccgttgcaca tagcccggca attcctttcc
     3361 ctgctctgcc ataagcgcag cgaatgccgg gtaatactcg tcaacgatct gatagagaag
     3421 ggtttgctcg ggtcggtggc tctggtaacg accagtatcc cgatcccggc tggccgtcct
     3481 ggccgccaca tgaggcatgt tccgcgtcct tgcaatactg tgtttacata cagtctatcg
     3541 cttagcggaa agttctttta ggggtctgac gctcagtgga acgaaaactc acgtt
//
LOCUS       DAJVUN010000456         3594 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.guided.271, whole genome shotgun sequence.
ACCESSION   DAJVUN010000456 DAJVUN010000000
VERSION     DAJVUN010000456.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.guided.271"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(<1..142)
                     /locus_tag="OQQ76_004338"
     CDS             complement(<1..142)
                     /locus_tag="OQQ76_004338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000954590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HCS1970558.1"
                     /translation="MLTDTKLRNLKPRDKLYKVNDREGLYVGVASENGIYGHSRFCNT
                     DFD"
     gene            472..1287
                     /gene="sul2"
                     /locus_tag="OQQ76_004339"
     CDS             472..1287
                     /gene="sul2"
                     /locus_tag="OQQ76_004339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HCS1970559.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            1392..2150
                     /locus_tag="OQQ76_004340"
     CDS             1392..2150
                     /locus_tag="OQQ76_004340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APH(3'') family aminoglycoside
                     O-phosphotransferase"
                     /protein_id="HCS1970560.1"
                     /translation="MPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLK
                     GRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSV
                     DQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQER
                     TDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDE
                     AERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            2150..2986
                     /locus_tag="OQQ76_004341"
     CDS             2150..2986
                     /locus_tag="OQQ76_004341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HCS1970561.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(3093..3497)
                     /locus_tag="OQQ76_004342"
                     /pseudo
     CDS             complement(3093..3497)
                     /locus_tag="OQQ76_004342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
BASE COUNT          746 a         1009 c          988 g          851 t
ORIGIN      
        1 cgtcaaaatc ggtgttgcaa aaacgggagt gaccatagat tccgttttct gaggcgaccc
       61 ccacatagag accttcccgg tcattcactt tgtagagttt gtccctgggc ttgagattgc
      121 gcagcttggt atcggtcagc atgtaccttg tccttcttcg tctccgatac ccactctatt
      181 gtaaacaaga catttttatc ttttatattc aatggcttat tttcctgcta attggtaata
      241 ccatgaaaaa taccatgctc agaaaaggct taacaatatt ttgaaaaatt gcctactgag
      301 cgctgccgca cagctccata ggccgctttc ctggctttgc ttccagatgt atgctattct
      361 gctcctgcag ctaatggagc accgcaaaca ggttactcgc ctggggattc cctttcgacc
      421 cgagcatccg tatgagactc atgctcgatt attattatta tagaagcccc catgaataaa
      481 tcgctcatca ttttcggcat cgtcaacata acctcggaca gtttctccga tggaggccgg
      541 tatctggcgc cagacgcagc cattgcgcag gcgcgtaagc tgatggccga gggggcagat
      601 gtgatcgacc tcggtccggc atccagcaat cccgacgccg cgcctgtttc gtccgacaca
      661 gaaatcgcgc gtatcgcgcc ggtgctggac gcgctcaagg cagatggcat tcccgtctcg
      721 ctcgacagtt atcaacccgc gacgcaagcc tatgccttgt cgcgtggtgt ggcctatctc
      781 aatgatattc gcggttttcc agacgctgcg ttctatccgc aattggcgaa atcatctgcc
      841 aaactcgtcg ttatgcattc ggtgcaagac gggcaggcag atcggcgcga ggcacccgct
      901 ggcgacatca tggatcacat tgcggcgttc tttgacgcgc gcatcgcggc gctgacgggt
      961 gccggtatca aacgcaaccg ccttgtcctt gatcccggca tggggttttt tctgggggct
     1021 gctcccgaaa cctcgctctc ggtgctggcg cggttcgatg aattgcggct gcgcttcgat
     1081 ttgccggtgc ttctgtctgt ttcgcgcaaa tcctttctgc gcgcgctcac aggccgtggt
     1141 ccgggggatg tcggggccgc gacactcgct gcagagcttg ccgccgccgc aggtggagct
     1201 gacttcatcc gcacacacga gccgcgcccc ttgcgcgacg ggctggcggt attggcggcg
     1261 ctgaaagaaa ccgcaagaat tcgttaactg cacattcggg atatttctct atattcgcgc
     1321 ttcatcagaa aactgaagga acctccattg aatcgaacta atattttttt ggtgaatcgc
     1381 attctgactg gttgcctgtc agaggcggag aatctggtga ttttgttttt cgacgtggtg
     1441 acgggcatgc cttcgcgaaa atcgcacctg cttcccgccg cggtgagctc gctggagagc
     1501 gtgaccgcct catttggctc aaaggtcgag gtgtggcttg ccccgaggtc atcaactggc
     1561 aggaggaaca ggagggtgca tgcttggtga taacggcaat tccgggagta ccggcggctg
     1621 atctgtctgg agcggatttg ctcaaagcgt ggccgtcaat ggggcagcaa cttggcgctg
     1681 ttcacagcct atcggttgat caatgtccgt ttgagcgcag gctgtcgcga atgttcggac
     1741 gcgccgttga tgtggtgtcc cgcaatgccg tcaatcccga cttcttaccg gacgaggaca
     1801 agagtacgcc gcagctcgat cttttggctc gtgtcgaacg agagctaccg gtgcggctcg
     1861 accaagagcg caccgatatg gttgtttgcc atggtgatcc ctgcatgccg aacttcatgg
     1921 tggaccctaa aactcttcaa tgcacgggtc tgatcgacct tgggcggctc ggaacagcag
     1981 atcgctatgc cgatttggca ctcatgattg ctaacgccga agagaactgg gcagcgccag
     2041 atgaagcaga gcgcgccttc gctgtcctat tcaatgtatt ggggatcgaa gcccccgacc
     2101 gcgaacgcct tgccttctat ctgcgattgg accctctgac ttggggttga tgttcatgcc
     2161 gcctgttttt cctgctcatt ggcacgtttc gcaacctgtt ctcattgcgg acaccttttc
     2221 cagcctcgtt tggaaagttt cattgccaga cgggactcct gcaatcgtca agggattgaa
     2281 acctatagaa gacattgctg atgaactgcg cggggccgac tatctggtat ggcgcaatgg
     2341 gaggggagca gtccggttgc tcggtcgtga gaacaatctg atgttgctcg aatatgccgg
     2401 ggagcgaatg ctctctcaca tcgttgccga gcacggcgac taccaggcga ccgaaattgc
     2461 agcggaacta atggcgaagc tgtatgccgc atctgaggaa cccctgcctt ctgcccttct
     2521 cccgatccgg gatcgctttg cagctttgtt tcagcgggcg cgcgatgatc aaaacgcagg
     2581 ttgtcaaact gactacgtcc acgcggcgat tatagccgat caaatgatga gcaatgcctc
     2641 ggaactgcgt gggctacatg gcgatctgca tcatgaaaac atcatgttct ccagtcgcgg
     2701 ctggctggtg atagatcccg tcggtctggt cggtgaagtg ggctttggcg ccgccaatat
     2761 gttctacgat ccggctgaca gagacgacct ttgtctcgat cctagacgca ttgcacagat
     2821 ggcggacgca ttctctcgtg cgctggacgt cgatccgcgt cgcctgctcg accaggcgta
     2881 cgcttatggg tgcctttccg cagcttggaa cgcggatgga gaagaggagc aacgcgatct
     2941 agctatcgcg gccgcgatca agcaggtgcg acagacgtca tactagatat caagcgactt
     3001 ctcctatccc ctgggaacac atcaatctca ccggagaata tcgctggcca aagccttagc
     3061 gtaggattcc gccccttccc gcaaacgacc ccaaacagga aacgcagctg aaacgggaag
     3121 ctcaacaccc actgacgcat gggttgttca ggcagtactt catcaaccag caaggcggca
     3181 ctttcggcca tccgccgcgc cccacagctc gggcagaaac cgcgacgctt acagctgaaa
     3241 gcgaccaggt gctcggcgtg gcaagactcg cagcgaaccc gtagaaagcc atgctccagc
     3301 cgcccgcatt ggagaaattc ttcaaattcc cgttgcacat agcccggcaa ttcctttccc
     3361 tgctctgcca taagcgcagc gaatgccggg taatactcgt caacgatctg atagagaagg
     3421 gtttgctcgg gtcggtggct ctggtaacga ccagtatccc gatcccggct ggccgtcctg
     3481 gccgccacat gaggcatgtt ccgcgtcctt gcaatactgt gtttacatac agtctatcgc
     3541 ttagcggaaa gttcttttag gggtctgacg ctcagtggaa cgaaaactca cgtt
//
LOCUS       DAJVUN010000457         2219 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.guided.314, whole genome shotgun sequence.
ACCESSION   DAJVUN010000457 DAJVUN010000000
VERSION     DAJVUN010000457.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.guided.314"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(45..1060)
                     /locus_tag="OQQ76_004343"
                     /pseudo
     CDS             complement(45..1060)
                     /locus_tag="OQQ76_004343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            1455..2111
                     /locus_tag="OQQ76_004344"
     CDS             1455..2111
                     /locus_tag="OQQ76_004344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HCS1970562.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
BASE COUNT          528 a          586 c          510 g          595 t
ORIGIN      
        1 aacgtgagtt ttcgttccac tgagcgtcag acccctaaaa tcctgatgct gatgtagtcc
       61 cgttttatcg tcatcacgaa gctttctgct atgccattgc tttccgggct tcgcactgct
      121 gtcgtacaag gctccagtcc cagcaaccgg gcgaacgccg gcactgttgg caactgcctt
      181 ccgaagcgtt tttccaccgc acccagcatg acatcctgca ccgtttcttt gtcatagcct
      241 ccggtgctcg ctgcccagtc aatgatctcc ctgtcgcagc agtcctgcgc gaaggtcacc
      301 cgcagctttt cgccattatc acagcggaac tcaaagccat ctgagcacca gcgccggtta
      361 ctttccgcta ctgctacgcg ccccttatgg gcccgcttac ggcaaggatc agcgggttta
      421 cgttcaagaa gcagattatg cgttctcata atgcgataca cccgctttgc attaaccaca
      481 ggcaggccgt cccgctccga ctcccgtcgc agcagcgccc acacacggcg ataaccatac
      541 gtcggcaggt cagccaccgc catgtttatc cgggacaata cggtggtatc gtcagaacgg
      601 ggctgccgtc tgcgatcctg tcagtcagat ggccggtgaa cccgaatgct caactgcgca
      661 cgcgacacgc caagacttct gcaaacgtcg cttattcgtc gttcccaggc aacgagggcg
      721 catgcgcaat ccattttttt gcccggccga actccacggc ctctttgagt atctcggctt
      781 ccatcgtctt tttgcccaga aggcgctgga gttcgcgaat ttgcttattg gcggcagcga
      841 gttcggaggc cggcaccact tcctcgcccg atgcaacagc cgtcagtgaa ccgtcttaat
      901 attgcttgcg ccatttgaat atctggtttg cattgatgcc atgcaggcgc gcgacatgag
      961 acacggtcat accgggctcc atagtctgct gaataatggc aattttttcc tgcggtgtac
     1021 gacgccgacg ccgctcaggt cctgataaca cttcaaccat cttatcgttc tgactggtat
     1081 taaacatagt tccaagacta cctcttattt taagagagtc gaagtgtctg gtgatctatg
     1141 gggccagtct agccctcttc caagtgtagg gagatatagt caaagtttgc ttctccgccg
     1201 atgagtccgc cctgcgtcgg atagtccgat tttttaccgg cgaagcacgg ctctcctaac
     1261 cctatctaaa gcgaataact tttttcaaca gggccgcgtg ccaatgcaag agcgataggc
     1321 gctctacgcg ccaatttgac cacttaaaac aggtaaattg aggggttgta atgtgttgat
     1381 gtaacaggct tttattttaa tgtcttggca tatgtataat ggtagtctag ccctcctttc
     1441 aacaaggagt actcatggaa acctacaatc atacatatcg gcaccacaac ttttcacata
     1501 aagacttaag tgatctcacc ttcaccgctt gcacattcat tcgcagcgac tttcgacgtg
     1561 ctaacttgcg tgatacgaca ttcgtcaact gcaagttcat tgaacagggt gatatcgaag
     1621 gctgccactt tgatgtcgca gatcttcgtg atgcaagttt ccaacaatgc caacttgcga
     1681 tggcaaactt cagtaatgcc aattgctacg gtatagagtt ccgtgcgtgt gatttaaaag
     1741 gtgccaactt ttcccgaaca aactttgccc atcaagtgag taatcgtatg tacttttgct
     1801 cagcatttat ttctggatgt aatctttcct atgccaatat ggagagggtt tgtttagaaa
     1861 aatgtgagtt gtttgaaaat cgctggatag gaacgaacct agcgggtgca tcactgaaag
     1921 agtcagactt aagtcgaggt gttttttccg aagatgtctg ggggcaattt agcctacagg
     1981 gtgccaattt atgccacgcc gaactcgacg gtttagatcc ccgcaaagtc gatacatcag
     2041 gtatcaaaat tgcagcctgg cagcaagaac tgattctcga agcactgggt attgttgttt
     2101 atcctgacta attgctttga tgtgtgattt taaacgctca aatttataaa acgaataata
     2161 ttgtcaacct tgcaataata gacataggga caaccatgta taaattttta ccctcaggc
//
LOCUS       DAJVUN010000458         1125 bp    DNA     linear   BCT 11-NOV-2022
DEFINITION  TPA_asm: Shigella boydii isolate 503127
            SAMEA8900177-rid15854793.guided.372, whole genome shotgun sequence.
ACCESSION   DAJVUN010000458 DAJVUN010000000
VERSION     DAJVUN010000458.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA8900177
            Sequence Read Archive: ERR6005771
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2022) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 10-NOV-2022
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001478685.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001478685.1
            Genome Coverage       :: 66x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 11/11/2022 01:58:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,268
            Genes (coding)                    :: 3,929
            CDSs (with protein)               :: 3,929
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 173 of 339
            Pseudo Genes (incomplete)         :: 98 of 339
            Pseudo Genes (internal stop)      :: 111 of 339
            Pseudo Genes (multiple problems)  :: 41 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA8900177-rid15854793.guided.372"
                     /serovar="S. boydii 10"
                     /isolate="503127"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /country="India"
                     /collection_date="2009-01-20"
     gene            complement(41..274)
                     /locus_tag="OQQ76_004345"
                     /pseudo
     CDS             complement(41..274)
                     /locus_tag="OQQ76_004345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221021.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase N-terminal SAM-like
                     domain-containing protein"
     gene            430..903
                     /locus_tag="OQQ76_004346"
     CDS             430..903
                     /locus_tag="OQQ76_004346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA14"
                     /protein_id="HCS1970563.1"
                     /translation="MKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEI
                     YRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG"
BASE COUNT          305 a          254 c          288 g          278 t
ORIGIN      
        1 atgataagtt tatcaccacc gactatttgc aacagtgccg cgtggagacc gaaaccttgc
       61 gctcgttcgc cagccaggac agaaatgcct cgacttcgct gctgcccaag gttgccgggt
      121 gacgcacacc gtggaaacgg atgaaggcac gaacccagtg gacataagcc tgttcggttc
      181 gtaaactgta atgcaagtag cgtatgcgct cacgcaactg gtccagaacc ttgaccgaac
      241 gcagcggtgg taacggcgca gtggcggttt tcatggcttg ttatgactgt ttttttgtac
      301 agtctatgcc tcgggcatcc aagcagcaag cgcgttacgc cgtgggtcga tgtttgatgt
      361 tatggagcag caacgatgtt acgcagcagg gcagtcgccc taaaacaaag ttaacccagg
      421 atgagaacct tgaaagtatc attgatggct gcgaaagcga aaaacggcgt gattggttgc
      481 ggtccagaca taccctggtc cgcgaaaggg gagcagctac tttttaaagc attgacctac
      541 aatcagtggc ttctggtggg tcgcaagacg tttgaatcta tgggcgcact ccccaatagg
      601 aaatacgcgg tcgttacccg ctcaggttgg acatcaaatg atgacaatgt agttgtattt
      661 cagtcaatcg aagaggccat ggacaggcta gctgaattca ccggtcacgt tatagtgtct
      721 ggtggcggag aaatttaccg agaaacatta cccatggcct ctacgctcca cttatcgacg
      781 atcgacatcg agccagaggg ggatgttttc ttcccgagta ttccaaatac cttcgaagtt
      841 gtttttgagc aacactttac ttcaaacatt aactattgct atcaaatttg gaaaaagggt
      901 taacaaagct atgcaatcga cggcaaaaag cttcgttcgc ttcgcgcact acgccttttc
      961 cgcgattgat agcgacgtta tgtgaatatt gaaatgagca ttccaaagaa aggaagtaga
     1021 aaaattatcg tgggcgaaaa tgagtttttg tggctcatta ggtcaaaact cacatattcg
     1081 caggacggca ctgttgcaaa tagtcggtgg tgataaactt atcat
//
